Citrus Sinensis ID: 044977

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------48
Protein Sequence
MQVPKKKIGSNEESKKKERHIVTWTQQEDDILREQISIHGTENWSIIASKFKDKTTRQCRRRWYTYLNSDFKKGGWSPEEDMLLCEAQKIFGNRWTEIAKVVSGRTDNAVKNRFSTLCKKRAKYEALAKENNNAYINPNNKRILFQNGFGTDGTPENAAPVKKVRRAHIPDLTENCNFENRSHRQSGTAANQHLRSPFTVLPQNFPSITHLPAKYHDAKEVSNDGEPLLQGFWNSQNNKTQGTFLKKDDPKITALIQQAELLSSLAQKVNTESTEQSLENAWKVLQDFLNRSKENDILRCKISDIDLQLEDFKDLIEDLRSSNDESRSSWRHPDLFEDSPASSEYSTGSTLIPRPAGDTTDQIDAELSALHQAIGTELQSIDIAKQHCLVEQDKGSADSKQGLFTSGGEDTNNDGAASTSSSTEFSSPLHVTPLFRSLAAGIPSPKFSESRVVVVKAVTTVVVTVTTLSLLFINRFIGL
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccHHHHHHHHHHHHHHccccHHHHHHHccccccHHHHHHHHcccccccccccccHHHHHHHHHHHHHHccHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccccHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccHHHHHHcccccccccHHHHHHHHHHHHEEEEEcccHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccccHcccccccccHHcccccccccHHHHHHHHHHHHHcccccHHHHHHHcccccHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHcccHHHHHHHcccccHHHHHHHHHcccccHHHHcccccccccccccccccccccccccccccccccccHHHHcccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHccHHccccccccccccHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHccccccccccccccccHcccccccccccccccccccccccccccccHHHHHcccccccEEEEccccHcccccccccccccccccccccccccccccccEEccccccccccccccHHHHHHHcccccccccHHHHHHHHHcccccccHcHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
mqvpkkkigsneeskkKERHIVTWTQQEDDILREQISIHGTENWSIIASKfkdkttrqCRRRWYTYLNsdfkkggwspeeDMLLCEAQKIFGNRWTEIAKVVSGRTDNAVKNRFSTLCKKRAKYEALAKENnnayinpnnkrilfqngfgtdgtpenaapvkkvrrahipdltencnfenrshrqsgtaanqhlrspftvlpqnfpsithlpakyhdakevsndgepllqgfwnsqnnktqgtflkkddpKITALIQQAELLSSLAQKVNTESTEQSLENAWKVLQDFLNrskendilrckisdidlQLEDFKDLIEDLRssndesrsswrhpdlfedspasseystgstliprpagdttDQIDAELSALHQAIGTELQSIDIAKQHClveqdkgsadskqglftsggedtnndgaastssstefssplhvtplfrslaagipspkfsesRVVVVKAVTTVVVTVTTLSLLFINRFIGL
Flexible Loop (DISEMBL)
mqvpkkkigsneeskkkerhivtwtqqeddILREQISihgtenwsiiaskfkdkttrqcRRRWYTYlnsdfkkggwspeEDMLLCEAQKIFGNRWTEIAKvvsgrtdnavknRFSTLCKKRAKYEALAKennnayinpnnKRILFQNGFGTDGTPENAAPVKKVRRAHIPDLTENCNFENRSHRQSGTAANQHLRSPFTVLPQNFPSITHLPAKYHDAKEVSNDGEPLLQGFWNSQNNKTQGTFLKKDDPKITALIQQAELLSSLAQKVNTESTEQSLENAWKVLQDFLNrskendilrckisdidlqlEDFKDLIEDLRssndesrsswrhpdlfedspasseystgstLIPRPAGDTTDQIDAELSALHQAIGTELQSIDIAKQHCLVEQDKGSADSKQGLFTSGGEDTNNDGAASTSSSTEFSSPLHVTPLFRSLAAGIPSPKFSESRVVVVKAVTTVVVTVttlsllfinrfigl
Low Complexity Region (SEG)
MQVPKKKIGSNEESKKKERHIVTWTQQEDDILREQISIHGTENWSIIASKFKDKTTRQCRRRWYTYLNSDFKKGGWSPEEDMLLCEAQKIFGNRWTEIAKVVSGRTDNAVKNRFSTLCKKRAKYEALAKENNNAYINPNNKRILFQNGFGTDGTPENAAPVKKVRRAHIPDLTENCNFENRSHRQSGTAANQHLRSPFTVLPQNFPSITHLPAKYHDAKEVSNDGEPLLQGFWNSQNNKTQGTFLKKDDPKITALIQQAELLSSLAQKVNTESTEQSLENAWKVLQDFLNRSKENDILRCKISDIDLQLEDFKDLIEDLRSSNDESRSSWRHPDLFEDSPASSEYSTGSTLIPRPAGDTTDQIDAELSALHQAIGTELQSIDIAKQHCLVEQDKGSADSKQGLFTSGGEDTNNDGAAstssstefssPLHVTPLFRSLAAGIPSPKFSESRvvvvkavttvvvtvttLSLLFINRFIGL
Disordered region (IsUnstruct)
********************IVTWTQQEDDILREQISIHGTENWSIIASKFKDKTTRQCRRRWYTYLNSDFKKGGWSPEEDMLLCEAQKIFGNRWTEIAKVVSGRTDNAVKNRFSTLCKKRAKYEALAKENNNAYINPNNKRILFQNGFG************************************************TVLPQNFPSITHLP****************LQGFW******************ITALIQQAEL*****************ENAWKVLQDFLNRSKENDILRCKISDIDLQLEDFKDLI****************************************************ALHQAIGTELQSIDIAKQHCLV****************************************VTPLFRSLAAGIPSPKFSESRVVVVKAVTTVVVTVTTLSLLFINRFI**
Disordered Region (DISOPRED)
***********************WTQQEDDILREQISIHGTENWSIIASKFKDKTTRQCRRRWYTYLNSDFKKGGWSPEEDMLLCEAQKIFGNRWTEIAKVVSGRTDNAVKNRFSTL********************************************************************************************************************************KKDDPKITALIQQA*********************AWKVLQDF**************SDIDLQLEDFKDLI*************************************************************************************************************SSPLHVTPLFRSLAAGIPSPKFSESRVVVVKAVTTVVVTVTTLSLLFINRFIGL
Disordered Region (DISEMBL)
*******************HIVTWTQQEDDILREQISIHGTENWSIIASKFKDKTTRQCRRRWYTYLNSDFKKGGWSPEEDMLLCEAQKIFGNRWTEIAKVVSGRTDNAVKNRFSTLCKKRAKYEALAKENNNAYINPNNKRILFQNGFGTDGTPENAAPVKKVRRAHIPDLTENCNFEN**********NQHLRSPFTVLPQNFPSITHLPAKYHDAKEVSNDGEPLLQGFWNSQNNKTQGTFLKKDDPKITALIQQAELLSSLAQ**********LENAWKVLQDFLNRSKENDILRCKISDIDLQLEDFKDLIEDL************HPDLFE************TLIPRPAGDTTDQIDAELSALHQAIGTELQSIDIAKQHCLVE********KQGLFTSGGEDT*****************LHVTPLFRSLAAGIPSPKFSESRVVVVKAVTTVVVTVTTLSLLFINRFIGL
Disordered Region (DISPRO)
**********NEESKK*ERHIVTWTQQEDDILREQISIHGTENWSIIASKFKDKTTRQCRRRWYTYLNSDFKKGGWSPEEDMLLCEAQKIFGNRWTEIAKVVSGRTDNAVKNRFSTLCKKRAKYEALAKENNNA***************************************************************F*********I*HLPAKYHDA********PLLQGFWNSQNNKTQGTFLKKDDPKITALIQQAELLSSLAQKVNTESTEQSLENAWKVLQDFLNRSKENDILRCKISDIDLQLEDFKDLIEDLRS***************************************DQIDAELSALHQAIGTELQSIDIAKQHCL**********KQGLFTSGGEDTNNDGAASTSSSTEFSSPLHVTPLFRSLAAGIPSPKFSESRVVVVKAVTTVVVTVTTLSLLFINRFIGL
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MQVPKKKIGSNEESKKKERHIVTWTQQEDDILREQISIHGTENWSIIASKFKDKTTRQCRRRWYTYLNSDFKKGGWSPEEDMLLCEAQKIFGNRWTEIAKVVSGRTDNAVKNRFSTLCKKRAKYEALAKENNNAYINPNNKRILFQNGFGTDGTPENAAPVKKVRRAHIPDLTENCNFENRSHRQSGTAANQHLRSPFTVLPQNFPSITHLPAKYHDAKEVSNDGEPLLQGFWNSQNNKTQGTFLKKDDPKITALIQQAELLSSLAQKVNTESTEQSLENAWKVLQDFLNRSKENDILRCKISDIDLQLEDFKDLIEDLRSSNDESRSSWRHPDLFEDSPASSEYSTGSTLIPRPAGDTTDQIDAELSALHQAIGTELQSIDIAKQHCLVEQDKGSADSKQGLFTSGGEDTNNDGAASTSSSTEFSSPLHVTPLFRSLAAGIPSPKFSESRVVVVKAVTTVVVTVTTLSLLFINRFIGL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	479	2.2.26 [Sep-21-2011]
P52551	743	Myb-related protein B OS=	N/A	no	0.208	0.134	0.44	3e-25
P48972	704	Myb-related protein B OS=	yes	no	0.231	0.157	0.423	5e-25
P10244	700	Myb-related protein B OS=	yes	no	0.231	0.158	0.423	6e-25
P06876	636	Transcriptional activator	no	no	0.286	0.215	0.371	4e-24
Q03237	686	Myb-related protein B OS=	yes	no	0.206	0.144	0.454	2e-23
P10242	640	Transcriptional activator	no	no	0.231	0.173	0.405	3e-23
P01103	641	Transcriptional activator	no	no	0.231	0.173	0.405	3e-23
P46200	640	Transcriptional activator	no	no	0.231	0.173	0.405	3e-23
P01104	382	Transforming protein Myb	N/A	no	0.231	0.290	0.414	5e-23
Q05935	728	Myb-related protein A OS=	N/A	no	0.231	0.152	0.414	2e-22

>sp|P52551|MYBB_XENLA Myb-related protein B OS=Xenopus laevis GN=mybl2 PE=2 SV=2

 Score =  116 bits (291), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 44/100 (44%), Positives = 74/100 (74%)

Query: 24  WTQQEDDILREQISIHGTENWSIIASKFKDKTTRQCRRRWYTYLNSDFKKGGWSPEEDML 83
           WT++ED+ + E +  +GT++W++IA + + +  +QCR RW+ +LN + KK  W+ EED +
Sbjct: 86  WTKEEDEKVIELVKKYGTKHWTLIAKQLRGRMGKQCRERWHNHLNPEVKKSSWTEEEDRI 145

Query: 84  LCEAQKIFGNRWTEIAKVVSGRTDNAVKNRFSTLCKKRAK 123
           +C+A K+ GNRW EIAK++ GRTDNAVKN +++  K++ +
Sbjct: 146 ICQAHKVLGNRWAEIAKLLPGRTDNAVKNHWNSTIKRKVE 185

Xenopus laevis (taxid: 8355)

>sp|P48972|MYBB_MOUSE Myb-related protein B OS=Mus musculus GN=Mybl2 PE=1 SV=1

 Score =  115 bits (289), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 47/111 (42%), Positives = 73/111 (65%)

Query: 24  WTQQEDDILREQISIHGTENWSIIASKFKDKTTRQCRRRWYTYLNSDFKKGGWSPEEDML 83
           WT++ED  + E +  +GT+ W++IA   K +  +QCR RW+ +LN + KK  W+ EED +
Sbjct: 86  WTKEEDQKVIELVKKYGTKQWTLIAKHLKGRLGKQCRERWHNHLNPEVKKSCWTEEEDRI 145

Query: 84  LCEAQKIFGNRWTEIAKVVSGRTDNAVKNRFSTLCKKRAKYEALAKENNNA 134
           +CEA K+ GNRW EIAK++ GRTDNAVKN +++  K++        E+ + 
Sbjct: 146 ICEAHKVLGNRWAEIAKMLPGRTDNAVKNHWNSTIKRKVDTGGFPAESRDC 196

Transcription factor involved in the regulation of cell survival, proliferation, and differentiation. Transactivates the expression of the CLU gene.

Mus musculus (taxid: 10090)

>sp|P10244|MYBB_HUMAN Myb-related protein B OS=Homo sapiens GN=MYBL2 PE=1 SV=1

 Score =  115 bits (289), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 47/111 (42%), Positives = 73/111 (65%)

Query: 24  WTQQEDDILREQISIHGTENWSIIASKFKDKTTRQCRRRWYTYLNSDFKKGGWSPEEDML 83
           WT++ED  + E +  +GT+ W++IA   K +  +QCR RW+ +LN + KK  W+ EED +
Sbjct: 86  WTKEEDQKVIELVKKYGTKQWTLIAKHLKGRLGKQCRERWHNHLNPEVKKSCWTEEEDRI 145

Query: 84  LCEAQKIFGNRWTEIAKVVSGRTDNAVKNRFSTLCKKRAKYEALAKENNNA 134
           +CEA K+ GNRW EIAK++ GRTDNAVKN +++  K++        E+ + 
Sbjct: 146 ICEAHKVLGNRWAEIAKMLPGRTDNAVKNHWNSTIKRKVDTGGFLSESKDC 196

Transcription factor involved in the regulation of cell survival, proliferation, and differentiation. Transactivates the expression of the CLU gene.

Homo sapiens (taxid: 9606)

>sp|P06876|MYB_MOUSE Transcriptional activator Myb OS=Mus musculus GN=Myb PE=1 SV=2

 Score =  113 bits (282), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 52/140 (37%), Positives = 81/140 (57%), Gaps = 3/140 (2%)

Query: 24  WTQQEDDILREQISIHGTENWSIIASKFKDKTTRQCRRRWYTYLNSDFKKGGWSPEEDML 83
           WT++ED  + E +  +G + WS+IA   K +  +QCR RW+ +LN + KK  W+ EED +
Sbjct: 95  WTKEEDQRVIELVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRI 154

Query: 84  LCEAQKIFGNRWTEIAKVVSGRTDNAVKNRFSTLCKKRAKYEALAKENNNAYINPNNKRI 143
           + +A K  GNRW EIAK++ GRTDNA+KN +++  +++ + E   +E + A   P     
Sbjct: 155 IYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKVEQEGYLQEPSKASQTPVATSF 214

Query: 144 LFQN---GFGTDGTPENAAP 160
              N   GFG    P   +P
Sbjct: 215 QKNNHLMGFGHASPPSQLSP 234

Transcriptional activator; DNA-binding protein that specifically recognize the sequence 5'-YAAC[GT]G-3'. Plays an important role in the control of proliferation and differentiation of hematopoietic progenitor cells.

Mus musculus (taxid: 10090)

>sp|Q03237|MYBB_CHICK Myb-related protein B OS=Gallus gallus GN=MYBL2 PE=1 SV=1

 Score =  110 bits (276), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 45/99 (45%), Positives = 69/99 (69%)

Query: 24  WTQQEDDILREQISIHGTENWSIIASKFKDKTTRQCRRRWYTYLNSDFKKGGWSPEEDML 83
           WT++ED  + E +  +GT+ W++IA   K +  +QCR RW+ +LN + KK  W+ EED +
Sbjct: 86  WTKEEDQKVIELVKKYGTKQWTLIAKHLKGRLGKQCRERWHNHLNPEVKKSSWTEEEDRI 145

Query: 84  LCEAQKIFGNRWTEIAKVVSGRTDNAVKNRFSTLCKKRA 122
           + EA K+ GNRW EIAK++ GRTDNAVKN +++  K++ 
Sbjct: 146 IFEAHKVLGNRWAEIAKLLPGRTDNAVKNHWNSTIKRKV 184

Represses v-myb- and c-myb-mediated activation of the mim-1 gene, probably by competing with other myb proteins for binding sites. It is an inhibitory member of the myb family.

Gallus gallus (taxid: 9031)

>sp|P10242|MYB_HUMAN Transcriptional activator Myb OS=Homo sapiens GN=MYB PE=1 SV=2

 Score =  110 bits (275), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 45/111 (40%), Positives = 74/111 (66%)

Query: 24  WTQQEDDILREQISIHGTENWSIIASKFKDKTTRQCRRRWYTYLNSDFKKGGWSPEEDML 83
           WT++ED  + E +  +G + WS+IA   K +  +QCR RW+ +LN + KK  W+ EED +
Sbjct: 95  WTKEEDQRVIELVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRI 154

Query: 84  LCEAQKIFGNRWTEIAKVVSGRTDNAVKNRFSTLCKKRAKYEALAKENNNA 134
           + +A K  GNRW EIAK++ GRTDNA+KN +++  +++ + E   +E++ A
Sbjct: 155 IYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKVEQEGYLQESSKA 205

Transcriptional activator; DNA-binding protein that specifically recognize the sequence 5'-YAAC[GT]G-3'. Plays an important role in the control of proliferation and differentiation of hematopoietic progenitor cells.

Homo sapiens (taxid: 9606)

>sp|P01103|MYB_CHICK Transcriptional activator Myb OS=Gallus gallus GN=MYB PE=2 SV=1

 Score =  110 bits (275), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 45/111 (40%), Positives = 74/111 (66%)

Query: 24  WTQQEDDILREQISIHGTENWSIIASKFKDKTTRQCRRRWYTYLNSDFKKGGWSPEEDML 83
           WT++ED  + E +  +G + WS+IA   K +  +QCR RW+ +LN + KK  W+ EED +
Sbjct: 95  WTKEEDQRVIELVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRI 154

Query: 84  LCEAQKIFGNRWTEIAKVVSGRTDNAVKNRFSTLCKKRAKYEALAKENNNA 134
           + +A K  GNRW EIAK++ GRTDNA+KN +++  +++ + E   +E++ A
Sbjct: 155 IYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKVEQEGYLQESSKA 205

Transcriptional activator; DNA-binding protein that specifically recognize the sequence 5'-YAAC[GT]G-3'. Plays an important role in the control of proliferation and differentiation of hematopoietic progenitor cells.

Gallus gallus (taxid: 9031)

>sp|P46200|MYB_BOVIN Transcriptional activator Myb OS=Bos taurus GN=MYB PE=2 SV=1

 Score =  110 bits (275), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 45/111 (40%), Positives = 74/111 (66%)

Query: 24  WTQQEDDILREQISIHGTENWSIIASKFKDKTTRQCRRRWYTYLNSDFKKGGWSPEEDML 83
           WT++ED  + E +  +G + WS+IA   K +  +QCR RW+ +LN + KK  W+ EED +
Sbjct: 95  WTKEEDQRVIELVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRI 154

Query: 84  LCEAQKIFGNRWTEIAKVVSGRTDNAVKNRFSTLCKKRAKYEALAKENNNA 134
           + +A K  GNRW EIAK++ GRTDNA+KN +++  +++ + E   +E++ A
Sbjct: 155 IYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKVEQEGYLQESSKA 205

Transcriptional activator; DNA-binding protein that specifically recognize the sequence 5'-YAAC[GT]G-3'. Plays an important role in the control of proliferation and differentiation of hematopoietic progenitor cells.

Bos taurus (taxid: 9913)

>sp|P01104|MYB_AVIMB Transforming protein Myb OS=Avian myeloblastosis virus GN=V-MYB PE=1 SV=2

 Score =  109 bits (272), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 46/111 (41%), Positives = 73/111 (65%)

Query: 24  WTQQEDDILREQISIHGTENWSIIASKFKDKTTRQCRRRWYTYLNSDFKKGGWSPEEDML 83
           WT++ED  + E +  +G + WS IA   K +  +QCR RW+ +LN + KK  W+ EED +
Sbjct: 24  WTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRI 83

Query: 84  LCEAQKIFGNRWTEIAKVVSGRTDNAVKNRFSTLCKKRAKYEALAKENNNA 134
           + +A K  GNRW EIAK++ GRTDNAVKN +++  +++ + E   +E++ A
Sbjct: 84  IYQAHKRLGNRWAEIAKLLPGRTDNAVKNHWNSTMRRKVEQEGYPQESSKA 134

DNA-binding protein that specifically recognizes the sequence 5'-YAAC[GT]G-3'. The v-Myb oncogene transforms immature myelomonocytic avian cells in culture and induces myeloblastosis (myeloid leukemia) in chickens.

Galliformes (taxid: 8976)

>sp|Q05935|MYBA_XENLA Myb-related protein A OS=Xenopus laevis GN=mybl1 PE=2 SV=1

 Score =  107 bits (268), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 46/111 (41%), Positives = 71/111 (63%)

Query: 24  WTQQEDDILREQISIHGTENWSIIASKFKDKTTRQCRRRWYTYLNSDFKKGGWSPEEDML 83
           WT++ED  + E +  +G + WSIIA   K +  +QCR RW+ +LN D KK  W+ EED +
Sbjct: 89  WTKEEDQRVIELVHKYGPKKWSIIAKHLKGRIGKQCRERWHNHLNPDVKKSSWTEEEDRI 148

Query: 84  LCEAQKIFGNRWTEIAKVVSGRTDNAVKNRFSTLCKKRAKYEALAKENNNA 134
           +  A K  GNRW EIAK++ GRTDN++KN +++  K++ + E   ++  N 
Sbjct: 149 IYSAHKRMGNRWAEIAKLLPGRTDNSIKNHWNSTMKRKVEQEGYLQDLMNC 199

Strong transcriptional activator; DNA-binding protein that specifically recognize the sequence 5'-YAAC[GT]G-3'. Could have a role in the proliferation and/or differentiation of neurogenic, spermatogenic and B-lymphoid cells.

Xenopus laevis (taxid: 8355)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	479
296086403	481	unnamed protein product [Vitis vinifera]	0.935	0.931	0.674	1e-174
359473371	481	PREDICTED: uncharacterized protein LOC10	0.926	0.923	0.680	1e-173
255558174	505	myb124, putative [Ricinus communis] gi|2	0.943	0.895	0.683	1e-171
224108103	448	predicted protein [Populus trichocarpa]	0.822	0.879	0.664	1e-156
356501908	472	PREDICTED: uncharacterized protein LOC10	0.891	0.904	0.655	1e-156
356497872	472	PREDICTED: uncharacterized protein LOC10	0.891	0.904	0.654	1e-155
302398953	469	MYB domain class transcription factor [M	0.891	0.910	0.640	1e-151
356524142	470	PREDICTED: uncharacterized protein LOC10	0.872	0.889	0.630	1e-150
357486695	466	Myb-related protein B [Medicago truncatu	0.883	0.907	0.618	1e-147
356570035	473	PREDICTED: uncharacterized protein LOC10	0.885	0.896	0.616	1e-143

>gi|296086403|emb|CBI31992.3| unnamed protein product [Vitis vinifera]

 Score =  618 bits (1594), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 313/464 (67%), Positives = 362/464 (78%), Gaps = 16/464 (3%)

Query: 1   MQVPKKKIGSNEESKKKERHIVTWTQQEDDILREQISIHGTENWSIIASKFKDKTTRQCR 60
           MQ+ KKK  ++   K+KERHIVTW+QQEDDILREQIS+HGTENW+IIASKFKDKTTRQCR
Sbjct: 1   MQM-KKKGNTDAPPKQKERHIVTWSQQEDDILREQISLHGTENWAIIASKFKDKTTRQCR 59

Query: 61  RRWYTYLNSDFKKGGWSPEEDMLLCEAQKIFGNRWTEIAKVVSGRTDNAVKNRFSTLCKK 120
           RRWYTYLNSDFKKGGWSPEED++LCEAQKIFGNRWTEIAKVVSGRTDNAVKNRFSTLCKK
Sbjct: 60  RRWYTYLNSDFKKGGWSPEEDLILCEAQKIFGNRWTEIAKVVSGRTDNAVKNRFSTLCKK 119

Query: 121 RAKYEALAKENNNAYINPNNKRILFQNGFGTDGTPENAAPVKKVRRAHIPDLTENCNFEN 180
           RAK+EALAKEN+ +YIN NNKR LF NGF TDGT E A  +KK+RR H+PDLTENCN   
Sbjct: 120 RAKHEALAKENSTSYINSNNKRALFNNGFNTDGTTEAAVSLKKMRRTHLPDLTENCNGGE 179

Query: 181 RSHRQSGTAANQHLRSPFTVLPQNFPSITHLPAKYH--DAKEVSNDGEPLLQGFWNSQNN 238
               + GT  NQ  R PF VL QNF S+  LP ++H    KEVSND          SQNN
Sbjct: 180 TLLSECGTTTNQQPRPPFAVLVQNFRSVNSLPVQHHVGSTKEVSNDA---------SQNN 230

Query: 239 KTQGTFLKKDDPKITALIQQAELLSSLAQKVNTESTEQSLENAWKVLQDFLNRSKENDIL 298
           K QGTFLKKDDPKITAL+QQAELLSSLA KVN E+T+QSLENAWKV QDFLN++KE+D+L
Sbjct: 231 KIQGTFLKKDDPKITALMQQAELLSSLALKVNAENTDQSLENAWKVFQDFLNQTKESDML 290

Query: 299 RCKISDIDLQLEDFKDLIEDLRSSNDESRSSWRHPDLFEDSPASSEYSTGSTLIPRPAGD 358
           R  IS++D QLEDFKD +EDLRSS + SR SWR PDL+E+SP SSEYSTGSTL+ + AGD
Sbjct: 291 RFNISEMDFQLEDFKDWVEDLRSSTEGSRPSWRQPDLYEESPGSSEYSTGSTLVSQTAGD 350

Query: 359 TTDQIDAELSALHQAIGTELQSIDIAK---QHCLVEQDKGSADSKQGLFTSGGEDTNNDG 415
             +Q   E+ ALHQ IG  LQ+I + +   + C+     G+  ++  +F S  E   ND 
Sbjct: 351 KIEQTQPEICALHQEIGVRLQTIPMDQNGFEECVKGVLSGTTTNQAEIFPSCDEPKTNDV 410

Query: 416 AASTSSSTEFSSPLHVTPLFRSLAAGIPSPKFSES-RVVVVKAV 458
            AS  SSTEFSSPL VTPLFRSLAAGIPSPKFSES R  +++A+
Sbjct: 411 VASNLSSTEFSSPLQVTPLFRSLAAGIPSPKFSESERNFLLRAL 454

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359473371|ref|XP_002271547.2| PREDICTED: uncharacterized protein LOC100246639 [Vitis vinifera]

 Score =  613 bits (1580), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 315/463 (68%), Positives = 359/463 (77%), Gaps = 19/463 (4%)

Query: 5   KKKIGSNEESKKKERHIVTWTQQEDDILREQISIHGTENWSIIASKFKDKTTRQCRRRWY 64
           KKK  ++   K+KERHIVTW+QQEDDILREQIS+HGTENW+IIASKFKDKTTRQCRRRWY
Sbjct: 2   KKKGNTDAPPKQKERHIVTWSQQEDDILREQISLHGTENWAIIASKFKDKTTRQCRRRWY 61

Query: 65  TYLNSDFKKGGWSPEEDMLLCEAQKIFGNRWTEIAKVVSGRTDNAVKNRFSTLCKKRAKY 124
           TYLNSDFKKGGWSPEED++LCEAQKIFGNRWTEIAKVVSGRTDNAVKNRFSTLCKKRAK+
Sbjct: 62  TYLNSDFKKGGWSPEEDLILCEAQKIFGNRWTEIAKVVSGRTDNAVKNRFSTLCKKRAKH 121

Query: 125 EALAKENNNAYINPNNKRILFQNGFGTDGTPENAAPVKKVRRAHIPDLTENCNFENRSHR 184
           EALAKEN+ +YIN NNKR LF NGF TDGT E A  +KK+RR H+PDLTENCN       
Sbjct: 122 EALAKENSTSYINSNNKRALFNNGFNTDGTTEAAVSLKKMRRTHLPDLTENCNGGETLLS 181

Query: 185 QSGTAANQHLRSPFTVLPQNFPSITHLPAKYH--DAKEVSNDGEPLLQGFWNSQNNKTQG 242
           + GT  NQ  R PF VL QNF S+  LP ++H    KEVSND          SQNNK QG
Sbjct: 182 ECGTTTNQQPRPPFAVLVQNFRSVNSLPVQHHVGSTKEVSNDA---------SQNNKIQG 232

Query: 243 TFLKKDDPKITALIQQAELLSSLAQKVNTESTEQSLENAWKVLQDFLNRSKENDILRCKI 302
           TFLKKDDPKITAL+QQAELLSSLA KVN E+T+QSLENAWKV QDFLN++KE+D+LR  I
Sbjct: 233 TFLKKDDPKITALMQQAELLSSLALKVNAENTDQSLENAWKVFQDFLNQTKESDMLRFNI 292

Query: 303 SDIDLQLEDFKDLIEDLRSSNDESRSSWRH---PDLFEDSPASSEYSTGSTLIPRPAGDT 359
           S++D QLEDFKD +EDLRSS + SR SWRH   PDL+E+SP SSEYSTGSTL+ + AGD 
Sbjct: 293 SEMDFQLEDFKDWVEDLRSSTEGSRPSWRHHRQPDLYEESPGSSEYSTGSTLVSQTAGDK 352

Query: 360 TDQIDAELSALHQAIGTELQSIDIAKQHCLVEQDKG---SADSKQGLFTSGGEDTNNDGA 416
            +Q   E+ ALHQ IG  LQ+I +  Q+   E  KG      + Q +F S  E   ND  
Sbjct: 353 IEQTQPEICALHQEIGVRLQTIPM-DQNGFEECVKGVLSGTTTNQEIFPSCDEPKTNDVV 411

Query: 417 ASTSSSTEFSSPLHVTPLFRSLAAGIPSPKFSES-RVVVVKAV 458
           AS  SSTEFSSPL VTPLFRSLAAGIPSPKFSES R  +++A+
Sbjct: 412 ASNLSSTEFSSPLQVTPLFRSLAAGIPSPKFSESERNFLLRAL 454

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255558174|ref|XP_002520114.1| myb124, putative [Ricinus communis] gi|223540606|gb|EEF42169.1| myb124, putative [Ricinus communis]

 Score =  608 bits (1569), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 326/477 (68%), Positives = 372/477 (77%), Gaps = 25/477 (5%)

Query: 1   MQVPKKK-IGSNEESKKKERHIVTWTQQEDDILREQISIHGTENWSIIASKFKDKTTRQC 59
           MQ  KKK  G NE+SKKKERHIVTWTQQEDDILR+QIS+HGTENW+IIASKFKDKTTRQC
Sbjct: 1   MQETKKKNSGCNEDSKKKERHIVTWTQQEDDILRQQISLHGTENWAIIASKFKDKTTRQC 60

Query: 60  RRRWYTYLNSDFKKGGWSPEEDMLLCEAQKIFGNRWTEIAKVVSGRTDNAVKNRFSTLCK 119
           RRRWYTYLNSDFKKGGWSPEED+LLCEAQKIFGNRWTEIAKVVSGRTDNAVKNRF+TLCK
Sbjct: 61  RRRWYTYLNSDFKKGGWSPEEDLLLCEAQKIFGNRWTEIAKVVSGRTDNAVKNRFTTLCK 120

Query: 120 KRAKYEALAKENNNAYINPNNKRILFQNGFGTDGTPENAAPVKKVRRAHIPDLTENCNFE 179
           KRAKYEALAKEN + Y+N NNKRILFQNG+  DG+PE A P KK RR+HI D TE+    
Sbjct: 121 KRAKYEALAKENKSTYVNSNNKRILFQNGYSADGSPEKAPPAKKTRRSHIIDRTEHYKLA 180

Query: 180 NRSHRQSGTAANQHLRSPFTVLPQNFPSITHLPAKYH--DAKEVSNDGEPLLQGFWNSQN 237
           NRSH Q G   NQ  R PF VL QNF ++ ++ A++   +AKEV  D E          N
Sbjct: 181 NRSHLQGG---NQQSRPPFAVLAQNFHNV-NVAAQHTAVNAKEVLIDAE----------N 226

Query: 238 NKTQGTFLKKDDPKITALIQQAELLSSLAQKVNTESTEQSLENAWKVLQDFLNRSKENDI 297
           +K + TFL+KDDPKITAL+QQAELLSSLA KVNTE+T+QSLENAWKVLQDFLNRSKENDI
Sbjct: 227 SKIEATFLRKDDPKITALMQQAELLSSLALKVNTENTDQSLENAWKVLQDFLNRSKENDI 286

Query: 298 LRCKISDIDLQLEDFKDLIEDLRSSNDESRSSWRHPDLFEDSPASSEYSTGSTLIPRPAG 357
           L  +ISDID QLEDFKDLIEDLRSS D SR SWR PDL+EDSPASS+YSTGSTL+P  A 
Sbjct: 287 LGYRISDIDFQLEDFKDLIEDLRSSYDGSRPSWRQPDLYEDSPASSDYSTGSTLMPYTAP 346

Query: 358 DTTDQIDAELSALHQAIGTELQSIDIAKQHCLVEQDK---GSADSKQG-LFTSGGEDTNN 413
           D T+Q  AE+  +H+ IG ELQS++  +Q+ + E +K     A   QG +F S  E TNN
Sbjct: 347 DKTEQAQAEIGEVHKDIGNELQSVNAEEQNDVDECEKEIIPCASISQGEIFPSFDEQTNN 406

Query: 414 DGAASTSSSTEFSSPLHVTPLFRSLAAGIPSPKFSES----RVVVVKAVTTVVVTVT 466
           D   S SSS+EFSSPL VTP+FRSLAAGIPSPKFSES     ++ +   T+ V   T
Sbjct: 407 DVVVSASSSSEFSSPLQVTPIFRSLAAGIPSPKFSESAYELHLITISGSTSQVHNCT 463

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224108103|ref|XP_002314722.1| predicted protein [Populus trichocarpa] gi|222863762|gb|EEF00893.1| predicted protein [Populus trichocarpa]

 Score =  558 bits (1439), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 293/441 (66%), Positives = 333/441 (75%), Gaps = 47/441 (10%)

Query: 12  EESKKKERHIVTWTQQEDDILREQISIHGTENWSIIASKFKDKTTRQCRRRWYTYLNSDF 71
           EESKKKERHIVTWTQ EDDILR+QIS++GTENW+IIASKFKDKTTRQCRRRWYTYLNSDF
Sbjct: 17  EESKKKERHIVTWTQLEDDILRQQISLNGTENWAIIASKFKDKTTRQCRRRWYTYLNSDF 76

Query: 72  KKGGWSPEEDMLLCEAQKIFGNRWTEIAKVVSGRTDNAVKNRFSTLCKKRAKYEALAKEN 131
           KKGGWSPEEDMLLCEAQKIFGNRWTEIAKVVSGRTDNAVKNRFSTLCKKRAKYEALAKEN
Sbjct: 77  KKGGWSPEEDMLLCEAQKIFGNRWTEIAKVVSGRTDNAVKNRFSTLCKKRAKYEALAKEN 136

Query: 132 NNAYINPNNKRILFQNGFGTDGTPENAAPVKKVRRAHIPDLTENCNFENRSHRQSGTAAN 191
            + +IN NNKRI+  +G   DG PE+  P+KK+R++HIP L  NCNF +RSH Q G   N
Sbjct: 137 RSTHINLNNKRIMLHHGLNGDGAPESDPPIKKIRKSHIPGLAGNCNFGDRSHPQCG---N 193

Query: 192 QHLRSPFTVLPQNFPSITHLPAKYH--DAKEVSNDGEPLLQGFWNSQNNKTQGTFLKKDD 249
           Q  R PF VL QN  ++ ++ +++H    KEVS D           QN+  Q TFLKKDD
Sbjct: 194 QQPRPPFAVLAQNLHNV-NVASQHHVSGVKEVSIDA---------VQNSMIQRTFLKKDD 243

Query: 250 PKITALIQQAELLSSLAQKVNTESTEQSLENAWKVLQDFLNRSKENDILRCKISDIDLQL 309
           PKITAL+QQAELLSSLA KV+ E+T+QSLEN+WKVLQDFLNRSKEN +   KI DID +L
Sbjct: 244 PKITALMQQAELLSSLALKVSEENTDQSLENSWKVLQDFLNRSKEN-VHGQKICDIDFKL 302

Query: 310 EDFKDLIEDLRSSNDESRSSWRHPDLFEDSPASSEYSTGSTLIPRPAGDTTDQIDAELSA 369
           +DFKDLIEDLRSSND SR SWR P L+E+SPASSEYSTGSTL+P PA D T+Q  AE+ A
Sbjct: 303 DDFKDLIEDLRSSNDGSRPSWRQPGLYEESPASSEYSTGSTLLPYPAPDKTEQTQAEIGA 362

Query: 370 LHQAIGTELQSIDIAKQHCLVEQDKGSADSKQGLFTSGGEDTNNDGAASTSSSTEFSSPL 429
           LH+ I  E+Q + I                         ++ N  GA       EFSSPL
Sbjct: 363 LHKDIEIEMQMVRI-------------------------DEENFVGAC------EFSSPL 391

Query: 430 HVTPLFRSLAAGIPSPKFSES 450
            VTPLFRSLAAGIPSPKFSES
Sbjct: 392 QVTPLFRSLAAGIPSPKFSES 412

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356501908|ref|XP_003519765.1| PREDICTED: uncharacterized protein LOC100807667 [Glycine max]

 Score =  556 bits (1433), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 297/453 (65%), Positives = 345/453 (76%), Gaps = 26/453 (5%)

Query: 11  NEESKKKERHIVTWTQQEDDILREQISIHGTENWSIIASKFKDKTTRQCRRRWYTYLNSD 70
           NEESKKKERHIVTWTQ+EDDILREQI +HGTENW+IIASKFKDKTTRQCRRRWYTYLNSD
Sbjct: 16  NEESKKKERHIVTWTQEEDDILREQIGVHGTENWAIIASKFKDKTTRQCRRRWYTYLNSD 75

Query: 71  FKKGGWSPEEDMLLCEAQKIFGNRWTEIAKVVSGRTDNAVKNRFSTLCKKRAKYEALAKE 130
           FKKGGWSPEEDMLLCEAQKIFGNRWTEIAKVVSGRTDNAVKNRFSTLCKKRAKYEAL KE
Sbjct: 76  FKKGGWSPEEDMLLCEAQKIFGNRWTEIAKVVSGRTDNAVKNRFSTLCKKRAKYEALVKE 135

Query: 131 NNNAYINPNNKRILFQNGFGTDGTPENAAPVKKVRRAHIPDLTENCNFENRSHRQSGTAA 190
           N+ +YIN NNKRI  Q+G  TD   E A  +KK+RR+HIPD  E  NF +RSH+Q+G   
Sbjct: 136 NSTSYINSNNKRIFLQHGCDTDVASETA--IKKMRRSHIPDAAEKINFGDRSHKQNGIPL 193

Query: 191 NQHLRSPFTVLPQNFPSITHLPAKYHDAKEVSNDGEPLLQGFWNSQNNKTQGTFLKKDDP 250
           N+  R+PF VL QN  ++ +LP ++H    V N     L+    ++NNK QGTFLKKDDP
Sbjct: 194 NEQSRAPFAVLAQNTHNV-NLPDQHH----VCN-----LKFSDYAENNKIQGTFLKKDDP 243

Query: 251 KITALIQQAELLSSLAQKVNTESTEQSLENAWKVLQDFLNRSKENDILRCKISDIDLQLE 310
           KI AL+QQAELLSSLA KV+ E+ +QSLENAWKVLQ+FLNR+KE+DI R KI   DLQL 
Sbjct: 244 KINALMQQAELLSSLALKVDAENMDQSLENAWKVLQEFLNRTKESDIPRYKIP--DLQLV 301

Query: 311 DFKDLIEDLRSSNDESRSSWRHPDLFEDSPASSEYSTGSTLIPRPAGDTTDQIDAELSAL 370
           D K+L+ DL+SS++E +  WR  +L+EDSP SSEYSTGSTL+P  AG+  +       +L
Sbjct: 302 DLKELLADLKSSSEEIQPCWRQMELYEDSPGSSEYSTGSTLLPHSAGEDLEH------SL 355

Query: 371 HQAIGTELQSIDIAKQHCLVEQDKG---SADSKQGLFTSGGEDTNNDGAAST-SSSTEFS 426
           HQ IGTEL +I I     +   D+G   SA   Q LF S  E  NND   S  SSS EFS
Sbjct: 356 HQDIGTEL-NIQIEDSEGVRGCDQGVLSSATLDQDLFPSCEEQINNDAIVSALSSSAEFS 414

Query: 427 SPLHVTPLFRSLAAGIPSPKFSES-RVVVVKAV 458
           SPL VTPLFRSLAAGIPSP+FSES R  ++K +
Sbjct: 415 SPLQVTPLFRSLAAGIPSPQFSESERSFLMKTL 447

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356497872|ref|XP_003517780.1| PREDICTED: uncharacterized protein LOC100803030 [Glycine max]

 Score =  553 bits (1424), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 296/452 (65%), Positives = 342/452 (75%), Gaps = 25/452 (5%)

Query: 11  NEESKKKERHIVTWTQQEDDILREQISIHGTENWSIIASKFKDKTTRQCRRRWYTYLNSD 70
           NEESKKKERHIVTW+Q+EDDILREQI +HGTENW+IIASKFKDKTTRQCRRRWYTYLNSD
Sbjct: 17  NEESKKKERHIVTWSQEEDDILREQIGVHGTENWAIIASKFKDKTTRQCRRRWYTYLNSD 76

Query: 71  FKKGGWSPEEDMLLCEAQKIFGNRWTEIAKVVSGRTDNAVKNRFSTLCKKRAKYEALAKE 130
           FKKGGWSPEED LLCEAQKIFGNRWTEIAKVVSGRTDNAVKNRFSTLCKKRAKYEALA E
Sbjct: 77  FKKGGWSPEEDKLLCEAQKIFGNRWTEIAKVVSGRTDNAVKNRFSTLCKKRAKYEALANE 136

Query: 131 NNNAYINPNNKRILFQNGFGTDGTPENAAPVKKVRRAHIPDLTENCNFENRSHRQSGTAA 190
           NN +YIN NNKRI  Q+G  TD   E+A  +KK+RR+HI D TE  NF +RSH+Q+G   
Sbjct: 137 NNTSYINSNNKRIFLQHGCDTDVASESA--IKKMRRSHISDATEKINFGDRSHKQNGILL 194

Query: 191 NQHLRSPFTVLPQNFPSITHLPAKYHDAKEVSNDGEPLLQGFWNSQNNKTQGTFLKKDDP 250
           NQ  R+PF VL QN  ++ +LP    D   V N     L+    +QNNK QGTFLKKDDP
Sbjct: 195 NQQSRAPFAVLAQNSHNV-NLP----DQHRVCN-----LKFSDYAQNNKIQGTFLKKDDP 244

Query: 251 KITALIQQAELLSSLAQKVNTESTEQSLENAWKVLQDFLNRSKENDILRCKISDIDLQLE 310
           +I  L+QQAELLSSLA KV+ E+ +QSLENAWKVLQ+FLNR+KE DI R KI   DLQL 
Sbjct: 245 RINTLMQQAELLSSLALKVDAENMDQSLENAWKVLQEFLNRTKELDIPRYKIP--DLQLV 302

Query: 311 DFKDLIEDLRSSNDESRSSWRHPDLFEDSPASSEYSTGSTLIPRPAGDTTDQIDAELSAL 370
           D KDL+ DL+SS++E +  WR  +L+EDSP SSEYSTGSTL+P  AG+  +       +L
Sbjct: 303 DLKDLLADLKSSSEEIQPCWRPVELYEDSPGSSEYSTGSTLMPHSAGEDLEH------SL 356

Query: 371 HQAIGTELQSIDIAKQHCLVEQDKG---SADSKQGLFTSGGEDTNNDGAASTSSSTEFSS 427
           HQ IGTEL +I I     +   D+G   SA   Q LF+S  E  NNDG  S  S +EFSS
Sbjct: 357 HQDIGTEL-NIQIGDPEGVRGCDQGILSSATLNQDLFSSSEEQINNDGIVSALSRSEFSS 415

Query: 428 PLHVTPLFRSLAAGIPSPKFSES-RVVVVKAV 458
           PL VTPLFRSLAAGIPSP+FSES R  ++K +
Sbjct: 416 PLQVTPLFRSLAAGIPSPQFSESERSFLMKTL 447

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302398953|gb|ADL36771.1| MYB domain class transcription factor [Malus x domestica]

 Score =  542 bits (1396), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 283/442 (64%), Positives = 335/442 (75%), Gaps = 15/442 (3%)

Query: 12  EESKKKERHIVTWTQQEDDILREQISIHGTENWSIIASKFKDKTTRQCRRRWYTYLNSDF 71
           EESKKKERHIVTW+Q+EDDILR QIS HGTENW+IIASKFKDKTTRQCRRRWYTYLNSDF
Sbjct: 4   EESKKKERHIVTWSQEEDDILRNQISTHGTENWAIIASKFKDKTTRQCRRRWYTYLNSDF 63

Query: 72  KKGGWSPEEDMLLCEAQKIFGNRWTEIAKVVSGRTDNAVKNRFSTLCKKRAKYEALAKEN 131
           KKGGWSPEEDMLLCEAQKIFGNRWTEIAKVVSGRTDNAVKNRFSTLCKKRAKYEALAKEN
Sbjct: 64  KKGGWSPEEDMLLCEAQKIFGNRWTEIAKVVSGRTDNAVKNRFSTLCKKRAKYEALAKEN 123

Query: 132 NNAYINPNNKRILFQNGFGTDGTPENAAPVKKVRRAHIPDLTENCNFENRSHRQSGTAAN 191
             ++IN N+KR++ +NGF TDGT E  AP KK+RR+HIP L+E     +R   Q G  + 
Sbjct: 124 AASHINQNDKRVIIRNGFNTDGTAETTAPSKKMRRSHIPSLSEG----DRLLEQCGKMS- 178

Query: 192 QHLRSPFTVLPQNFPSITHLPAKYHDAKEVSNDGEPLLQGFWNSQNNKTQGTFLKKDDPK 251
           Q LR+PF VL QN  ++ +LP    D   V+   E  +      Q +K  G+FLKKDDPK
Sbjct: 179 QQLRAPFAVLIQNVHNVENLP----DQNNVNGTKEVPVNAV---QKSKFHGSFLKKDDPK 231

Query: 252 ITALIQQAELLSSLAQKVNTESTEQSLENAWKVLQDFLNRSKENDILRCKISDIDLQLED 311
           I AL+QQAELLSSLA KVN E+T+QSLENAWKVLQDFLN+SK++DIL   I+D D QLED
Sbjct: 232 IIALMQQAELLSSLALKVNAENTDQSLENAWKVLQDFLNQSKDSDILSYGINDFDFQLED 291

Query: 312 FKDLIEDLRSSNDESRSSWRH---PDLFEDSPASSEYSTGSTLIPRPAGDTTDQIDAELS 368
            K L+EDLRS+ + SR SW+H   PDL+E+SP SSEYSTGSTL+ +      ++ + E+ 
Sbjct: 292 LKYLLEDLRSTTEGSRPSWQHCRQPDLYEESPGSSEYSTGSTLLSQTEYYQVEKNEVEIG 351

Query: 369 ALHQAIGTELQSIDIAKQHCLVEQDKGSADSKQGLFTSGGEDTNNDGAASTSSSTEFSSP 428
           +L+Q I    QSI I  ++ + + +KG    KQ +F S  E T +    S  SS EF+SP
Sbjct: 352 SLNQEIRPGSQSIPIEGKNGVGDCEKGIFSEKQEIFPSCDEATKDYAVVSALSSIEFNSP 411

Query: 429 LHVTPLFRSLAAGIPSPKFSES 450
           + VTPLFRSLAAGIPSPKFSES
Sbjct: 412 IKVTPLFRSLAAGIPSPKFSES 433

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356524142|ref|XP_003530691.1| PREDICTED: uncharacterized protein LOC100803361 [Glycine max]

 Score =  537 bits (1384), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 282/447 (63%), Positives = 332/447 (74%), Gaps = 29/447 (6%)

Query: 11  NEESKKKERHIVTWTQQEDDILREQISIHGTENWSIIASKFKDKTTRQCRRRWYTYLNSD 70
           N ESKKKERHIVTWTQ+EDDILREQI IHGTENW+IIASKFKDKTTRQCRRRWYTYLNSD
Sbjct: 10  NGESKKKERHIVTWTQEEDDILREQIGIHGTENWAIIASKFKDKTTRQCRRRWYTYLNSD 69

Query: 71  FKKGGWSPEEDMLLCEAQKIFGNRWTEIAKVVSGRTDNAVKNRFSTLCKKRAKYEALAKE 130
           FKKGGWS EEDMLLCEAQK+FGNRWTEIAKVVSGRTDNAVKNRFSTLC+K+ KY ALAKE
Sbjct: 70  FKKGGWSAEEDMLLCEAQKVFGNRWTEIAKVVSGRTDNAVKNRFSTLCRKKQKYAALAKE 129

Query: 131 NNNAYINPNNKRILFQNGFGTDGTPENAAPVKKVRRAHIPDLTENCNFENRSHRQSGTAA 190
           N+ +YIN NNKR++ Q+    D T E+  P+K +RRA I D  E   FE+RSH ++GT  
Sbjct: 130 NSTSYINSNNKRMMLQHCNNMDTTSESGVPIKNLRRADIADDAEKIKFEDRSHLRNGTPI 189

Query: 191 NQHLRSPFTVLPQNFPSITHLPAKYHDAKEVSNDGEPLLQGFWNSQNNKTQGTFLKKDDP 250
           NQ  R+P  VL QN  +  +L  ++H          P      ++QNNK QGTFLKKDDP
Sbjct: 190 NQQPRAPLAVLAQNCHNSNNLTDQHHLCN-------PKFSS--SAQNNKIQGTFLKKDDP 240

Query: 251 KITALIQQAELLSSLAQKVNTESTEQSLENAWKVLQDFLNRSKENDILRCKISDI-DLQL 309
           KI+AL+QQAELLSSLA KV+TE+ +QSLENAWKVLQ+FLNRSKE+DI   K+ DI +LQL
Sbjct: 241 KISALMQQAELLSSLALKVDTENMDQSLENAWKVLQEFLNRSKESDIPGQKVPDIPNLQL 300

Query: 310 EDFKDLIEDLRSSNDESRSSWRHPDLFEDSPASSEYSTGSTLIPRPAGDTTDQIDAELSA 369
            D KD+IEDL+S N+E ++ WR  D +E+SP SS YSTGS LI + A D  +       +
Sbjct: 301 VDLKDMIEDLKSGNEEGQACWRKMDCYENSPGSSGYSTGSILICQSASDNLEH------S 354

Query: 370 LHQAIGTELQSIDIAKQHCLVEQDKG------SADSKQGLFTSGGEDTNNDGAASTSSST 423
           LHQ IGTE++S    KQ   +E +KG      +A+  Q +     E  NNDG  STSS  
Sbjct: 355 LHQDIGTEMKS----KQ---LEDEKGVKVVMPTANVDQDMVPCCMEQINNDGIVSTSSRL 407

Query: 424 EFSSPLHVTPLFRSLAAGIPSPKFSES 450
           EFSSPL VTPLFRSLAAGIPSP+FSES
Sbjct: 408 EFSSPLQVTPLFRSLAAGIPSPQFSES 434

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357486695|ref|XP_003613635.1| Myb-related protein B [Medicago truncatula] gi|87241137|gb|ABD32995.1| Homeodomain-related [Medicago truncatula] gi|355514970|gb|AES96593.1| Myb-related protein B [Medicago truncatula]

 Score =  529 bits (1362), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 280/453 (61%), Positives = 335/453 (73%), Gaps = 30/453 (6%)

Query: 1   MQVPKKKIGSNEESKKKERHIVTWTQQEDDILREQISIHGTENWSIIASKFKDKTTRQCR 60
           M+  K+K   NEESKKKERHIVTWTQ+EDDILR+QI IHGTENW+IIASKFKDKTTRQCR
Sbjct: 6   MKKQKQKQLLNEESKKKERHIVTWTQEEDDILRDQIGIHGTENWAIIASKFKDKTTRQCR 65

Query: 61  RRWYTYLNSDFKKGGWSPEEDMLLCEAQKIFGNRWTEIAKVVSGRTDNAVKNRFSTLCKK 120
           RRWYTYLNSDFKKGGWSPEEDMLLCEAQKIFGNRWTEIAKVVSGRTDNAVKNRFSTLCKK
Sbjct: 66  RRWYTYLNSDFKKGGWSPEEDMLLCEAQKIFGNRWTEIAKVVSGRTDNAVKNRFSTLCKK 125

Query: 121 RAKYEALAKENNNAYINPNNKRILFQNGFGTDGTPENAAPVKKVRRAHIPDLTENCNFEN 180
           RAKYEALAKENN +Y N NNKRI+F+     D   ++A   KK+RR+HIPD  E   F +
Sbjct: 126 RAKYEALAKENNISYTNSNNKRIIFR-----DEASDSAVDYKKMRRSHIPDGAEKVGFAD 180

Query: 181 RSHRQSGTAANQHLRSPFTVLPQNFPSITHLPAKYHDAKEVSNDGEPLLQGFWNSQNNKT 240
           +SH+Q+ T+     R+P  VL QN  +  +LP    D   V N       G+  +QNNK 
Sbjct: 181 KSHKQNETS-----RAPLAVLAQNTHNANNLP----DHNHVCNVK---FSGY--AQNNKI 226

Query: 241 QGTFLKKDDPKITALIQQAELLSSLAQKVNTESTEQSLENAWKVLQDFLNRSKENDILRC 300
           QGTFLKKDDPKI AL+QQAELL+SLA KV+ E+ +QSLENAWK+LQ+F+NR+KE+D+   
Sbjct: 227 QGTFLKKDDPKINALMQQAELLTSLALKVDAENMDQSLENAWKILQEFMNRNKESDVSGY 286

Query: 301 KISDIDLQLEDFKDLIEDLRSSNDESRSSWRHPDLFEDSPASSEYSTGSTLIPRPAGDTT 360
           KI   DLQL D KDL++DL+++++E    WR+ + +EDSP SSE+STGST +P   G+  
Sbjct: 287 KIP--DLQLVDLKDLLQDLKNNSEEIEPCWRYMEFYEDSPESSEHSTGSTTLPHCTGENL 344

Query: 361 DQIDAELSALHQAIGTELQSIDIAKQHCLVEQDK---GSADSKQGLFTSGGEDTNNDGAA 417
           +       +LHQ  GTEL+SI I  Q  +   D     SA   Q +F+S  E  NNDG  
Sbjct: 345 EH------SLHQDSGTELKSIQIEHQKEIGGCDHVILSSATLDQDIFSSCEEQINNDGIV 398

Query: 418 STSSSTEFSSPLHVTPLFRSLAAGIPSPKFSES 450
            + SS EFSSPL VTP+FRSLAAGIPSP+FSES
Sbjct: 399 CSLSSAEFSSPLQVTPMFRSLAAGIPSPQFSES 431

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356570035|ref|XP_003553198.1| PREDICTED: uncharacterized protein LOC100793723 [Glycine max]

 Score =  514 bits (1325), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 276/448 (61%), Positives = 323/448 (72%), Gaps = 24/448 (5%)

Query: 11  NEESKKKERHIVTWTQQEDDILREQISIHGTENWSIIASKFKDKTTRQCRRRWYTYLNSD 70
           N ESKKKERHIVTWTQQEDDILRE+I IHGTENW+IIASKFKDKTTRQCRRRWYTYLNSD
Sbjct: 6   NGESKKKERHIVTWTQQEDDILREEIGIHGTENWAIIASKFKDKTTRQCRRRWYTYLNSD 65

Query: 71  FKKGGWSPEEDMLLCEAQKIFGNRWTEIAKVVSGRTDNAVKNRFSTLCKKRAKYEALAKE 130
           FKKGGWS EED+LLCEAQKIFGNRWTEIAKVVSGRTDNAVKNRFSTLC+K+ KYEALAKE
Sbjct: 66  FKKGGWSAEEDILLCEAQKIFGNRWTEIAKVVSGRTDNAVKNRFSTLCRKKQKYEALAKE 125

Query: 131 NNNAYINPNNKRILFQNGFGTDGTPENAAPVKKVRRAHIPDLTENCNFENRSHRQSGTAA 190
           N+ +YIN NNKR++FQ+    D T E+  P+K +RR HI    E   FE+R H ++ T  
Sbjct: 126 NSTSYINSNNKRVMFQHCNNMDTTSESGVPIKNLRRTHIHYNAEKIKFEDRLHLRNETPI 185

Query: 191 NQHLRSPFTVLPQNFPSITHLPAKYHDAKEVSNDGEPLLQGFWNSQNNKTQGTFLKKDDP 250
           NQ  R+P  VL QN  +  +LP ++H    V N   P      +SQN K QGTFLKKD P
Sbjct: 186 NQQPRAPLAVLAQNSHNSNNLPDQHH----VCN---PKFSSLGSSQNYKIQGTFLKKDYP 238

Query: 251 KITALIQQAELLSSLAQKVNTESTEQSLENAWKVLQDFLNRSKENDILRCKISDIDLQLE 310
           KI+AL+QQAELLSSLA KV+  + +QS ENAWKVLQ+FLNR+KE+DI   KI   DLQL 
Sbjct: 239 KISALMQQAELLSSLALKVDAGNMDQSFENAWKVLQEFLNRTKESDIPGHKIP--DLQLV 296

Query: 311 DFKDLIEDLRSSNDESRSSWRH---PDLFEDSPASSEYSTGSTLIPRPAGDTTDQIDAEL 367
           D KD+IEDL+S N+E ++ WR+    D +EDSP SS YSTGS L+   AGD  +      
Sbjct: 297 DLKDVIEDLKSGNEEGQACWRYFKQVDRYEDSPGSSGYSTGSILLCESAGDNLE------ 350

Query: 368 SALHQAIGTELQSIDIAKQHCLVEQDKG-----SADSKQGLFTSGGEDTNNDGAASTSSS 422
            + HQ IGTEL+S  +  +   V +D G     + +  Q       E  NNDG  S SS 
Sbjct: 351 PSFHQDIGTELKSEQLEDEKG-VGRDDGKVVLSTLNVDQDTLPCFEEQINNDGIVSASSR 409

Query: 423 TEFSSPLHVTPLFRSLAAGIPSPKFSES 450
            EFSSPL VTPLFRSLAAGIPSP+FSES
Sbjct: 410 LEFSSPLQVTPLFRSLAAGIPSPQFSES 437

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	479
TAIR|locus:2058827	484	MYB88 "myb domain protein 88"	0.899	0.890	0.567	4.8e-126
TAIR|locus:2012587	436	FLP "AT1G14350" [Arabidopsis t	0.617	0.678	0.514	1.2e-81
UNIPROTKB|E9PJ96	364	MYB "Transcriptional activator	0.231	0.304	0.405	1.7e-23
UNIPROTKB|Q708E6	347	MYB "Transcriptional activator	0.231	0.319	0.405	1.7e-23
UNIPROTKB|E9PJT2	326	MYB "Transcriptional activator	0.231	0.340	0.405	1.7e-23
UNIPROTKB|E9PMQ0	299	MYB "Transcriptional activator	0.231	0.371	0.405	1.7e-23
UNIPROTKB|E9PMZ0	374	MYB "Transcriptional activator	0.231	0.296	0.405	3.3e-23
UNIPROTKB|F1NMP9	379	MYB "Transcriptional activator	0.231	0.292	0.405	1.2e-22
UNIPROTKB|F1PQ73	693	MYBL2 "Uncharacterized protein	0.229	0.158	0.427	1.3e-22
TAIR|locus:2170583	359	MYB115 "myb domain protein 115	0.279	0.373	0.380	1.3e-22

TAIR|locus:2058827 MYB88 "myb domain protein 88" [Arabidopsis thaliana (taxid:3702)]

 Score = 1238 (440.9 bits), Expect = 4.8e-126, P = 4.8e-126
 Identities = 260/458 (56%), Positives = 327/458 (71%)

Query:     1 MQVPKKKIGSNEESKKKERHIVTWTQQEDDILREQISIHGTENWSIIASKFKDKTTRQCR 60
             M+  KK +  +++SKKKERHIVTW+ +EDDILR+QIS+ GTENW+IIASKF DK+TRQCR
Sbjct:    10 MKKKKKILLHSDDSKKKERHIVTWSPEEDDILRKQISLQGTENWAIIASKFNDKSTRQCR 69

Query:    61 RRWYTYLNSDFKKGGWSPEEDMLLCEAQKIFGNRWTEIAKVVSGRTDNAVKNRFSTLCKK 120
             RRWYTYLNSDFK+GGWSPEED LLCEAQ++FGNRWTEIAKVVSGRTDNAVKNRF+TLCKK
Sbjct:    70 RRWYTYLNSDFKRGGWSPEEDTLLCEAQRLFGNRWTEIAKVVSGRTDNAVKNRFTTLCKK 129

Query:   121 RAKYEALAKENNNAY-INPNNKRILFQNGFGTDGTPENAAPV-KKVRRAHIPDLTENCNF 178
             RAK+EA+AKEN  A  +N +NKR+LF +G  T    E+ +P+ KK+RR+HIP+LTE  ++
Sbjct:   130 RAKHEAMAKENRIACCVNSDNKRLLFPDGISTPLKAESESPLTKKMRRSHIPNLTEIKSY 189

Query:   179 ENRSHRQSGTAANQHLRSPFTVLPQNFPSITHLPAKYHDAKEVSNDGEPLLQGFWNSQNN 238
              +RSH +  +  NQ  R PF+V+  N  S         + K++ N  E       + ++ 
Sbjct:   190 GDRSHIKVESTMNQQRRHPFSVVAHNATSSDGT----EEQKQIGNVKES------DGEDK 239

Query:   239 KTQGTFLKKDDPKITALIQQAELLSSLAQKVNTESTEQSLENAWKVLQDFLNRSKENDIL 298
               Q  FLKKDD K+TAL+QQAELLSSLAQKVN ++T+QS+ENAWKVLQDFLN+SKEND+ 
Sbjct:   240 SNQEVFLKKDDSKVTALMQQAELLSSLAQKVNADNTDQSMENAWKVLQDFLNKSKENDLF 299

Query:   299 RCKISDIDLQLEDFKDLIEDLRSSNDESRSSWRHPDLFEDSPASSEYSTGS----TLIPR 354
             R  I DID QL++FKDL+EDLRSSN++S+SSWR PDL  DSPASSEYS+GS    T++  
Sbjct:   300 RYGIPDIDFQLDEFKDLVEDLRSSNEDSQSSWRQPDL-HDSPASSEYSSGSGSGSTIMTH 358

Query:   355 PAGDTTDQIDAELSAL-HQAIGTELQSIDIAKQHCLVEQDKGSADSKQGLFTSGGEDTNN 413
             P+GD T Q+ ++     HQ  G EL   +       VEQ         GL ++G +   N
Sbjct:   359 PSGDKTQQLMSDTQTTSHQQNGGELLQDNGIVSDATVEQ--------VGLLSTGHDVLKN 410

Query:   414 DGAAXXX-XXXXXXXPLHVTPLFRSLAAGIPSPKFSES 450
                            P+ VTPLFRSLAAGIPSP+FSES
Sbjct:   411 SNETVPIPGEEEFNSPVQVTPLFRSLAAGIPSPQFSES 448

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0010052 "guard cell differentiation" evidence=IGI

TAIR|locus:2012587 FLP "AT1G14350" [Arabidopsis thaliana (taxid:3702)]

 Score = 740 (265.6 bits), Expect = 1.2e-81, Sum P(2) = 1.2e-81
 Identities = 162/315 (51%), Positives = 208/315 (66%)

Query:     5 KKKIGSNEESKKKERHIVTWTQQEDDILREQISIHGTENWSIIASKFKDKTTRQCRRRWY 64
             KK I +N++SKKKERHIVTW+Q+ED ILREQI++HGTENW+IIASKFKDK+TRQCRRRWY
Sbjct:     9 KKNINNNQDSKKKERHIVTWSQEEDVILREQITLHGTENWAIIASKFKDKSTRQCRRRWY 68

Query:    65 TYLNSDFKKGGWSPEEDMLLCEAQKIFGNRWTEIAKVVSGRTDNAVKNRFSTLCKKRAKY 124
             TYLNSDFK+GGWSPEEDMLLCEAQ++FGNRWTEIAKVVSGRTDNAVKNRF+TLCKKRAK+
Sbjct:    69 TYLNSDFKRGGWSPEEDMLLCEAQRVFGNRWTEIAKVVSGRTDNAVKNRFTTLCKKRAKH 128

Query:   125 EALAKENNNAYINPNNKRILFQNGFGTDGTPENAAPV-KKVRRAHIPDLTENCNFENRSH 183
             EA+ K++N+     N KR+LF +G  T    EN  P+ KK++R+HI DLTE  N+  R+ 
Sbjct:   129 EAMTKDSNS-----NTKRMLFLDGISTPRKSENETPIAKKLKRSHILDLTEISNY-GRAE 182

Query:   184 RQSGTAANQHLRSPFTVLPQNFPSITHLPAKYHDAKEVSNDGEPLLQGFWNSQNNKTQGT 243
                    NQ +RSPF+VL +N   I  L  +   +    +DGE +   F    + K   T
Sbjct:   183 ----ACVNQQIRSPFSVLARNATGIDSLEEQNQTSNVNESDGEGM---FLKKDDPKV--T 233

Query:   244 FLKKDDPKITALIQQAELLSSLAQKVNTESTEQSLENAWKVLQDFLNRSKENDILRCKIS 303
              L +    +++L Q+    ++     N     Q   N  K  ++ L R    DI   KI 
Sbjct:   234 ALMQQAELLSSLAQKVNADNTEQSMENAWKVLQDFLNKGK--ENDLFRYGIPDI-DFKIE 290

Query:   304 DIDLQLEDFKDLIED 318
             +    +ED +   ED
Sbjct:   291 EFKDLIEDLRSGYED 305

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0010052 "guard cell differentiation" evidence=IGI;NAS

GO:0043565 "sequence-specific DNA binding" evidence=IDA

GO:0003677 "DNA binding" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

UNIPROTKB|E9PJ96 MYB "Transcriptional activator Myb" [Homo sapiens (taxid:9606)]

 Score = 274 (101.5 bits), Expect = 1.7e-23, P = 1.7e-23
 Identities = 45/111 (40%), Positives = 74/111 (66%)

Query:    24 WTQQEDDILREQISIHGTENWSIIASKFKDKTTRQCRRRWYTYLNSDFKKGGWSPEEDML 83
             WT++ED  + E +  +G + WS+IA   K +  +QCR RW+ +LN + KK  W+ EED +
Sbjct:    95 WTKEEDQRVIELVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRI 154

Query:    84 LCEAQKIFGNRWTEIAKVVSGRTDNAVKNRFSTLCKKRAKYEALAKENNNA 134
             + +A K  GNRW EIAK++ GRTDNA+KN +++  +++ + E   +E++ A
Sbjct:   155 IYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKVEQEGYLQESSKA 205

GO:0003677 "DNA binding" evidence=IEA

GO:0003682 "chromatin binding" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

UNIPROTKB|Q708E6 MYB "Transcriptional activator Myb" [Homo sapiens (taxid:9606)]

 Score = 274 (101.5 bits), Expect = 1.7e-23, P = 1.7e-23
 Identities = 45/111 (40%), Positives = 74/111 (66%)

Query:    24 WTQQEDDILREQISIHGTENWSIIASKFKDKTTRQCRRRWYTYLNSDFKKGGWSPEEDML 83
             WT++ED  + E +  +G + WS+IA   K +  +QCR RW+ +LN + KK  W+ EED +
Sbjct:    95 WTKEEDQRVIELVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRI 154

Query:    84 LCEAQKIFGNRWTEIAKVVSGRTDNAVKNRFSTLCKKRAKYEALAKENNNA 134
             + +A K  GNRW EIAK++ GRTDNA+KN +++  +++ + E   +E++ A
Sbjct:   155 IYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKVEQEGYLQESSKA 205

GO:0003677 "DNA binding" evidence=IEA

GO:0003682 "chromatin binding" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

UNIPROTKB|E9PJT2 MYB "Transcriptional activator Myb" [Homo sapiens (taxid:9606)]

 Score = 274 (101.5 bits), Expect = 1.7e-23, P = 1.7e-23
 Identities = 45/111 (40%), Positives = 74/111 (66%)

Query:    24 WTQQEDDILREQISIHGTENWSIIASKFKDKTTRQCRRRWYTYLNSDFKKGGWSPEEDML 83
             WT++ED  + E +  +G + WS+IA   K +  +QCR RW+ +LN + KK  W+ EED +
Sbjct:    71 WTKEEDQRVIELVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRI 130

Query:    84 LCEAQKIFGNRWTEIAKVVSGRTDNAVKNRFSTLCKKRAKYEALAKENNNA 134
             + +A K  GNRW EIAK++ GRTDNA+KN +++  +++ + E   +E++ A
Sbjct:   131 IYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKVEQEGYLQESSKA 181

GO:0003677 "DNA binding" evidence=IEA

GO:0003682 "chromatin binding" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

UNIPROTKB|E9PMQ0 MYB "Transcriptional activator Myb" [Homo sapiens (taxid:9606)]

 Score = 274 (101.5 bits), Expect = 1.7e-23, P = 1.7e-23
 Identities = 45/111 (40%), Positives = 74/111 (66%)

Query:    24 WTQQEDDILREQISIHGTENWSIIASKFKDKTTRQCRRRWYTYLNSDFKKGGWSPEEDML 83
             WT++ED  + E +  +G + WS+IA   K +  +QCR RW+ +LN + KK  W+ EED +
Sbjct:    71 WTKEEDQRVIELVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRI 130

Query:    84 LCEAQKIFGNRWTEIAKVVSGRTDNAVKNRFSTLCKKRAKYEALAKENNNA 134
             + +A K  GNRW EIAK++ GRTDNA+KN +++  +++ + E   +E++ A
Sbjct:   131 IYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKVEQEGYLQESSKA 181

GO:0003677 "DNA binding" evidence=IEA

GO:0003682 "chromatin binding" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

UNIPROTKB|E9PMZ0 MYB "Transcriptional activator Myb" [Homo sapiens (taxid:9606)]

 Score = 274 (101.5 bits), Expect = 3.3e-23, P = 3.3e-23
 Identities = 45/111 (40%), Positives = 74/111 (66%)

Query:    24 WTQQEDDILREQISIHGTENWSIIASKFKDKTTRQCRRRWYTYLNSDFKKGGWSPEEDML 83
             WT++ED  + E +  +G + WS+IA   K +  +QCR RW+ +LN + KK  W+ EED +
Sbjct:    95 WTKEEDQRVIELVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRI 154

Query:    84 LCEAQKIFGNRWTEIAKVVSGRTDNAVKNRFSTLCKKRAKYEALAKENNNA 134
             + +A K  GNRW EIAK++ GRTDNA+KN +++  +++ + E   +E++ A
Sbjct:   155 IYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKVEQEGYLQESSKA 205

GO:0003677 "DNA binding" evidence=IEA

GO:0003682 "chromatin binding" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

UNIPROTKB|F1NMP9 MYB "Transcriptional activator Myb" [Gallus gallus (taxid:9031)]

 Score = 274 (101.5 bits), Expect = 1.2e-22, P = 1.2e-22
 Identities = 45/111 (40%), Positives = 74/111 (66%)

Query:    24 WTQQEDDILREQISIHGTENWSIIASKFKDKTTRQCRRRWYTYLNSDFKKGGWSPEEDML 83
             WT++ED  + E +  +G + WS+IA   K +  +QCR RW+ +LN + KK  W+ EED +
Sbjct:    24 WTKEEDQRVIELVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRI 83

Query:    84 LCEAQKIFGNRWTEIAKVVSGRTDNAVKNRFSTLCKKRAKYEALAKENNNA 134
             + +A K  GNRW EIAK++ GRTDNA+KN +++  +++ + E   +E++ A
Sbjct:    84 IYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKVEQEGYLQESSKA 134

GO:0003682 "chromatin binding" evidence=IEA

GO:0000082 "G1/S transition of mitotic cell cycle" evidence=IEA

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0001701 "in utero embryonic development" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006338 "chromatin remodeling" evidence=IEA

GO:0006816 "calcium ion transport" evidence=IEA

GO:0030183 "B cell differentiation" evidence=IEA

GO:0045624 "positive regulation of T-helper cell differentiation" evidence=IEA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0048538 "thymus development" evidence=IEA

GO:0048566 "embryonic digestive tract development" evidence=IEA

GO:0048872 "homeostasis of number of cells" evidence=IEA

GO:0051571 "positive regulation of histone H3-K4 methylation" evidence=IEA

GO:0051574 "positive regulation of histone H3-K9 methylation" evidence=IEA

UNIPROTKB|F1PQ73 MYBL2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 285 (105.4 bits), Expect = 1.3e-22, Sum P(2) = 1.3e-22
 Identities = 47/110 (42%), Positives = 73/110 (66%)

Query:    24 WTQQEDDILREQISIHGTENWSIIASKFKDKTTRQCRRRWYTYLNSDFKKGGWSPEEDML 83
             WT++ED  + E +  +GT+ W++IA   K +  +QCR RW+ +LN + KK  W+ EED +
Sbjct:    79 WTKEEDQKVIELVKKYGTKQWTLIAKHLKGRLGKQCRERWHNHLNPEVKKSCWTEEEDRI 138

Query:    84 LCEAQKIFGNRWTEIAKVVSGRTDNAVKNRFSTLCKKRAKYEALAKENNN 133
             +CEA K+ GNRW EIAK++ GRTDNAVKN +++  K++        E+ +
Sbjct:   139 ICEAHKVLGNRWAEIAKMLPGRTDNAVKNHWNSTIKRKVDTGGFLSESKD 188

GO:0090307 "spindle assembly involved in mitosis" evidence=IEA

GO:0031523 "Myb complex" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0003682 "chromatin binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

TAIR|locus:2170583 MYB115 "myb domain protein 115" [Arabidopsis thaliana (taxid:3702)]

 Score = 266 (98.7 bits), Expect = 1.3e-22, P = 1.3e-22
 Identities = 54/142 (38%), Positives = 85/142 (59%)

Query:     2 QVPKKKIGSNEESKKKERHIV---TWTQQEDDILREQISIHGTENWSIIASKFKDKTTRQ 58
             +V + K+    + KKK+  I+    WT  ED++L   +   GT+NW+ IA  F+ +  +Q
Sbjct:   138 RVTEDKVMFKTDHKKKD--IIGKGQWTPTEDELLVRMVKSKGTKNWTSIAKMFQGRVGKQ 195

Query:    59 CRRRWYTYLNSDFKKGGWSPEEDMLLCEAQKIFGNRWTEIAKVVSGRTDNAVKNRFSTLC 118
             CR RW+ +L  + KK  WS EED +L E  KI GN+WTEIAK + GR++N VKN ++   
Sbjct:   196 CRERWHNHLRPNIKKNDWSEEEDQILIEVHKIVGNKWTEIAKRLPGRSENIVKNHWNAT- 254

Query:   119 KKRAKYEALAKENNNAYINPNN 140
             K+R    ++  + ++A+   NN
Sbjct:   255 KRRL--HSVRTKRSDAFSPRNN 274

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00037016001 SubName- Full=Chromosome chr1 scaffold_84, whole genome shotgun sequence; (480 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	479
COG5147	512	COG5147, REB1, Myb superfamily proteins, including	6e-17
PLN03091	459	PLN03091, PLN03091, hypothetical protein; Provisio	2e-14
PLN03212	249	PLN03212, PLN03212, Transcription repressor MYB5;	5e-14
pfam00249	47	pfam00249, Myb_DNA-binding, Myb-like DNA-binding d	1e-13
pfam13921	59	pfam13921, Myb_DNA-bind_6, Myb-like DNA-binding do	2e-12
smart00717	49	smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIII	6e-12
cd00167	45	cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-	1e-11
pfam00249	47	pfam00249, Myb_DNA-binding, Myb-like DNA-binding d	1e-10
smart00717	49	smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIII	4e-10
cd00167	45	cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-	9e-10
cd11660	50	cd11660, SANT_TRF, Telomere repeat binding factor-	5e-06
pfam13921	59	pfam13921, Myb_DNA-bind_6, Myb-like DNA-binding do	6e-05
cd11659	53	cd11659, SANT_CDC5_II, SANT/myb-like DNA-binding d	3e-04
cd11660	50	cd11660, SANT_TRF, Telomere repeat binding factor-	8e-04

>gnl|CDD|227476 COG5147, REB1, Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]

 Score = 82.9 bits (205), Expect = 6e-17
 Identities = 37/133 (27%), Positives = 58/133 (43%), Gaps = 2/133 (1%)

Query: 11  NEESKKKERHIVTWTQQEDDILREQISIHGTENWSIIASKFKDKTTRQCRRRWYTYLNSD 70
             +  + +R   +W + ED+ L+  +   G  NWS +AS     T +Q   RW  +LN  
Sbjct: 10  QIKLMQTKRKGGSWKRTEDEDLKALVKKLGPNNWSKVASLLISSTGKQSSNRWNNHLNPQ 69

Query: 71  FKKGGWSPEEDMLLCEAQKIFGNRWTEIAKVVSGRTDNAVKNRFSTLCKKRAKYEALAKE 130
            KK  WS EED  L +  K  G +W+ IA     RT      R+    +  +       +
Sbjct: 70  LKKKNWSEEEDEQLIDLDKELGTQWSTIADYKDRRTAQQCVERYVNTLEDLSSTHDSKLQ 129

Query: 131 NNNAY--INPNNK 141
             N +  I+P N+
Sbjct: 130 RRNEFDKIDPFNE 142

Length = 512

>gnl|CDD|215570 PLN03091, PLN03091, hypothetical protein; Provisional

 Score = 74.6 bits (183), Expect = 2e-14
 Identities = 43/133 (32%), Positives = 70/133 (52%), Gaps = 10/133 (7%)

Query: 24  WTQQEDDILREQISIHGTENWSIIASKFK-DKTTRQCRRRWYTYLNSDFKKGGWSPEEDM 82
           W+ +ED+ L   I+ +G   WS +  +    +  + CR RW  YL  D K+G +S +E+ 
Sbjct: 17  WSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQQEEN 76

Query: 83  LLCEAQKIFGNRWTEIAKVVSGRTDNAVKNRFSTLCKKRAKYEALAKENNNAYINPNNKR 142
           L+ E   + GNRW++IA  + GRTDN +KN +++  KK+ +            I+PN  +
Sbjct: 77  LIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQRG---------IDPNTHK 127

Query: 143 ILFQNGFGTDGTP 155
            L +   G D  P
Sbjct: 128 PLSEVENGEDKNP 140

Length = 459

>gnl|CDD|178751 PLN03212, PLN03212, Transcription repressor MYB5; Provisional

 Score = 71.3 bits (174), Expect = 5e-14
 Identities = 35/99 (35%), Positives = 55/99 (55%), Gaps = 1/99 (1%)

Query: 24  WTQQEDDILREQISIHGTENWSIIASKFKD-KTTRQCRRRWYTYLNSDFKKGGWSPEEDM 82
           WT +ED+IL   I   G   W  +  +    +  + CR RW  YL    K+GG + +E+ 
Sbjct: 28  WTVEEDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRWMNYLRPSVKRGGITSDEED 87

Query: 83  LLCEAQKIFGNRWTEIAKVVSGRTDNAVKNRFSTLCKKR 121
           L+    ++ GNRW+ IA  + GRTDN +KN ++T  +K+
Sbjct: 88  LILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLRKK 126

Length = 249

>gnl|CDD|215818 pfam00249, Myb_DNA-binding, Myb-like DNA-binding domain

 Score = 64.5 bits (158), Expect = 1e-13
 Identities = 20/44 (45%), Positives = 26/44 (59%)

Query: 24 WTQQEDDILREQISIHGTENWSIIASKFKDKTTRQCRRRWYTYL 67
          WT +ED++L E +  HG  NWS IA     +T  QC+ RW  YL
Sbjct: 4  WTPEEDELLIEAVKKHGNGNWSKIAKHLPGRTDNQCKNRWNNYL 47

This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Length = 47

>gnl|CDD|206092 pfam13921, Myb_DNA-bind_6, Myb-like DNA-binding domain

 Score = 61.6 bits (150), Expect = 2e-12
 Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 2/61 (3%)

Query: 24 WTQQEDDILREQISIHGTENWSIIASKFKDKTTRQCRRRWYTYLNSDFKKGGWSPEEDML 83
          WT++ED+ L + +  +G  +W  IA +   +T   CR RW   L     +G W+ EED  
Sbjct: 1  WTEEEDEKLLKLVEKYGN-DWKQIAEELG-RTPSACRDRWRRKLRPKRSRGPWTKEEDQR 58

Query: 84 L 84
          L
Sbjct: 59 L 59

This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Length = 59

>gnl|CDD|197842 smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

 Score = 59.9 bits (146), Expect = 6e-12
 Identities = 18/47 (38%), Positives = 26/47 (55%)

Query: 23 TWTQQEDDILREQISIHGTENWSIIASKFKDKTTRQCRRRWYTYLNS 69
           WT++ED++L E +  +G  NW  IA +   +T  QCR RW   L  
Sbjct: 3  EWTEEEDELLIELVKKYGKNNWEKIAKELPGRTAEQCRERWRNLLKP 49

Length = 49

>gnl|CDD|238096 cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains

 Score = 59.1 bits (144), Expect = 1e-11
 Identities = 18/45 (40%), Positives = 27/45 (60%)

Query: 23 TWTQQEDDILREQISIHGTENWSIIASKFKDKTTRQCRRRWYTYL 67
           WT++ED++L E +  +G  NW  IA +   +T +QCR RW   L
Sbjct: 1  PWTEEEDELLLEAVKKYGKNNWEKIAKELPGRTPKQCRERWRNLL 45

Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA. Length = 45

>gnl|CDD|215818 pfam00249, Myb_DNA-binding, Myb-like DNA-binding domain

 Score = 56.4 bits (137), Expect = 1e-10
 Identities = 25/46 (54%), Positives = 32/46 (69%), Gaps = 1/46 (2%)

Query: 73  KGGWSPEEDMLLCEAQKIFGNR-WTEIAKVVSGRTDNAVKNRFSTL 117
           +G W+PEED LL EA K  GN  W++IAK + GRTDN  KNR++  
Sbjct: 1   RGPWTPEEDELLIEAVKKHGNGNWSKIAKHLPGRTDNQCKNRWNNY 46

This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Length = 47

>gnl|CDD|197842 smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

 Score = 54.5 bits (132), Expect = 4e-10
 Identities = 22/49 (44%), Positives = 28/49 (57%), Gaps = 1/49 (2%)

Query: 73  KGGWSPEEDMLLCEAQKIFG-NRWTEIAKVVSGRTDNAVKNRFSTLCKK 120
           KG W+ EED LL E  K +G N W +IAK + GRT    + R+  L K 
Sbjct: 1   KGEWTEEEDELLIELVKKYGKNNWEKIAKELPGRTAEQCRERWRNLLKP 49

Length = 49

>gnl|CDD|238096 cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains

 Score = 53.7 bits (130), Expect = 9e-10
 Identities = 20/43 (46%), Positives = 26/43 (60%), Gaps = 1/43 (2%)

Query: 76  WSPEEDMLLCEAQKIFG-NRWTEIAKVVSGRTDNAVKNRFSTL 117
           W+ EED LL EA K +G N W +IAK + GRT    + R+  L
Sbjct: 2   WTEEEDELLLEAVKKYGKNNWEKIAKELPGRTPKQCRERWRNL 44

Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA. Length = 45

>gnl|CDD|212558 cd11660, SANT_TRF, Telomere repeat binding factor-like DNA-binding domains of the SANT/myb-like family

 Score = 43.3 bits (103), Expect = 5e-06
 Identities = 12/45 (26%), Positives = 20/45 (44%), Gaps = 3/45 (6%)

Query: 24 WTQQEDDILREQISIHGTENWSIIASKFKDKTTR---QCRRRWYT 65
          WT +ED+ L E +  +G  NW+ I   +     R     + +W  
Sbjct: 3  WTDEEDEALVEGVEKYGVGNWAKILKDYFFVNNRTSVDLKDKWRN 47

Human telomere repeat binding factors, TRF1 and TRF2, function as part of the 6 component shelterin complex. TRF2 binds DNA and recruits RAP1 (via binding to the RAP1 protein c-terminal (RCT)) and TIN2 in the protection of telomeres from DNA repair machinery. Metazoan shelterin consists of 3 DNA binding proteins (TRF2, TRF1, and POT1) and 3 recruited proteins that bind to one or more of these DNA-binding proteins (RAP1, TIN2, TPP1). Schizosaccharomyces pombe TAZ1 is an orthlog and binds RAP1. Human TRF1 and TRF2 bind double-stranded DNA. hTRF2 consists of a basic N-terminus, a TRF homology domain, the RAP1 binding motif (RBM), the TIN2 binding motif (TBM) and a myb-like DNA binding domain, SANT, named after 'SWI3, ADA2, N-CoR and TFIIIB', several factors that share this domain. Tandem copies of the domain bind telomeric DNA tandem repeats as part of the capping complex. The single myb-like domain of TRF-type proteins is similar to the tandem myb_like domains found in yeast RAP1. Length = 50

>gnl|CDD|206092 pfam13921, Myb_DNA-bind_6, Myb-like DNA-binding domain

 Score = 40.4 bits (95), Expect = 6e-05
 Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 1/55 (1%)

Query: 76  WSPEEDMLLCEAQKIFGNRWTEIAKVVSGRTDNAVKNRFSTLCKKRAKYEALAKE 130
           W+ EED  L +  + +GN W +IA+ + GRT +A ++R+    + +       KE
Sbjct: 1   WTEEEDEKLLKLVEKYGNDWKQIAEEL-GRTPSACRDRWRRKLRPKRSRGPWTKE 54

This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Length = 59

>gnl|CDD|212557 cd11659, SANT_CDC5_II, SANT/myb-like DNA-binding domain of Cell Division Cycle 5-Like Protein repeat II

 Score = 38.4 bits (90), Expect = 3e-04
 Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 1/46 (2%)

Query: 72  KKGGWSPEEDMLLCEAQKIFGNRWTEIAKVVSGRTDNAVKNRFSTL 117
           KK  W+ EED  L    K+   +W  IA +V GRT      R++ L
Sbjct: 4   KKTEWTREEDEKLLHLAKLLPTQWRTIAPIV-GRTAQQCLERYNKL 48

In humans, cell division cycle 5-like protein (CDC5) functions in pre-mRNA splicing in cell cycle control. The DNA-binding, myb-like domain of CDC5 is a member of the SANT/myb group. SANT is named after 'SWI3, ADA2, N-CoR and TFIIIB', several factors that share this domain. The SANT domain resembles the 3 alpha-helix bundle of DNA-binding Myb domains and is found in a diverse set of proteins. Length = 53

>gnl|CDD|212558 cd11660, SANT_TRF, Telomere repeat binding factor-like DNA-binding domains of the SANT/myb-like family

 Score = 37.2 bits (87), Expect = 8e-04
 Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 4/48 (8%)

Query: 76  WSPEEDMLLCEAQKIFGN-RWTEIAK---VVSGRTDNAVKNRFSTLCK 119
           W+ EED  L E  + +G   W +I K    V+ RT   +K+++  L K
Sbjct: 3   WTDEEDEALVEGVEKYGVGNWAKILKDYFFVNNRTSVDLKDKWRNLKK 50

Human telomere repeat binding factors, TRF1 and TRF2, function as part of the 6 component shelterin complex. TRF2 binds DNA and recruits RAP1 (via binding to the RAP1 protein c-terminal (RCT)) and TIN2 in the protection of telomeres from DNA repair machinery. Metazoan shelterin consists of 3 DNA binding proteins (TRF2, TRF1, and POT1) and 3 recruited proteins that bind to one or more of these DNA-binding proteins (RAP1, TIN2, TPP1). Schizosaccharomyces pombe TAZ1 is an orthlog and binds RAP1. Human TRF1 and TRF2 bind double-stranded DNA. hTRF2 consists of a basic N-terminus, a TRF homology domain, the RAP1 binding motif (RBM), the TIN2 binding motif (TBM) and a myb-like DNA binding domain, SANT, named after 'SWI3, ADA2, N-CoR and TFIIIB', several factors that share this domain. Tandem copies of the domain bind telomeric DNA tandem repeats as part of the capping complex. The single myb-like domain of TRF-type proteins is similar to the tandem myb_like domains found in yeast RAP1. Length = 50

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	479
KOG0048	238	consensus Transcription factor, Myb superfamily [T	100.0
PLN03212	249	Transcription repressor MYB5; Provisional	99.97
PLN03091	459	hypothetical protein; Provisional	99.96
KOG0049	939	consensus Transcription factor, Myb superfamily [T	99.72
PF13921	60	Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB:	99.6
KOG0049	939	consensus Transcription factor, Myb superfamily [T	99.57
COG5147	512	REB1 Myb superfamily proteins, including transcrip	99.55
KOG0050	617	consensus mRNA splicing protein CDC5 (Myb superfam	99.5
PF13921	60	Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB:	99.38
PF00249	48	Myb_DNA-binding: Myb-like DNA-binding domain; Inte	99.35
PLN03212	249	Transcription repressor MYB5; Provisional	99.33
PF00249	48	Myb_DNA-binding: Myb-like DNA-binding domain; Inte	99.29
KOG0051	607	consensus RNA polymerase I termination factor, Myb	99.26
KOG0048	238	consensus Transcription factor, Myb superfamily [T	99.25
PLN03091	459	hypothetical protein; Provisional	99.17
smart00717	49	SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-bindi	99.14
smart00717	49	SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-bindi	99.05
KOG0051	607	consensus RNA polymerase I termination factor, Myb	99.05
cd00167	45	SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding do	98.99
cd00167	45	SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding do	98.92
COG5147	512	REB1 Myb superfamily proteins, including transcrip	98.17
TIGR01557	57	myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF c	97.63
KOG0050	617	consensus mRNA splicing protein CDC5 (Myb superfam	97.61
KOG0457	438	consensus Histone acetyltransferase complex SAGA/A	97.49
TIGR01557	57	myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF c	97.28
PF13325	199	MCRS_N: N-terminal region of micro-spherule protei	97.17
KOG0457	438	consensus Histone acetyltransferase complex SAGA/A	97.17
TIGR02894	161	DNA_bind_RsfA transcription factor, RsfA family. I	96.8
PF13837	90	Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain;	96.55
KOG1279	506	consensus Chromatin remodeling factor subunit and	96.53
COG5259	531	RSC8 RSC chromatin remodeling complex subunit RSC8	96.39
PF08914	65	Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR0150	96.24
COG5259	531	RSC8 RSC chromatin remodeling complex subunit RSC8	96.15
PF13837	90	Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain;	96.13
KOG1279	506	consensus Chromatin remodeling factor subunit and	95.93
PRK13923	170	putative spore coat protein regulator protein YlbO	95.52
PF08914	65	Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR0150	95.42
PLN03142	1033	Probable chromatin-remodeling complex ATPase chain	95.19
PF13873	78	Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain	94.96
COG5114	432	Histone acetyltransferase complex SAGA/ADA, subuni	94.79
TIGR02894	161	DNA_bind_RsfA transcription factor, RsfA family. I	94.65
COG5114	432	Histone acetyltransferase complex SAGA/ADA, subuni	94.27
PF13873	78	Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain	94.1
PRK13923	170	putative spore coat protein regulator protein YlbO	91.95
KOG2656	445	consensus DNA methyltransferase 1-associated prote	91.14
PF09111	118	SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain	90.14
PF12776	96	Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain;	87.67
KOG4282	345	consensus Transcription factor GT-2 and related pr	86.94
KOG1194	534	consensus Predicted DNA-binding protein, contains	86.84
COG5118	507	BDP1 Transcription initiation factor TFIIIB, Bdp1	81.58
PF08281	54	Sigma70_r4_2: Sigma-70, region 4; InterPro: IPR013	80.55
KOG4282	345	consensus Transcription factor GT-2 and related pr	80.28

>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]

Probab=100.00  E-value=3.6e-34  Score=276.24  Aligned_cols=111  Identities=35%  Similarity=0.560  Sum_probs=104.9

Q ss_pred             ccCCCCCCCCHHHHHHHHHHHHHhCCCChhhHhhhcC-CCChhhhhhhhhhccCCCCCCCCCCHHHHHHHHHHHHHhCCc
Q 044977           16 KKERHIVTWTQQEDDILREQISIHGTENWSIIASKFK-DKTTRQCRRRWYTYLNSDFKKGGWSPEEDMLLCEAQKIFGNR   94 (479)
Q Consensus        16 Kkkrkrg~WT~EEDekL~elV~k~G~~nWs~IAk~lp-gRT~kQCReRW~n~L~P~IkKg~WT~EEDelLLelvkk~Gnr   94 (479)
                      |+...+|+||+|||++|+++|+.||.++|..||+.++ +|++|+||+||.|||+|++++|.||+|||.+|+++|..+||+
T Consensus         4 k~~~~kGpWt~EED~~L~~~V~~~G~~~W~~i~k~~gl~R~GKSCRlRW~NyLrP~ikrg~fT~eEe~~Ii~lH~~~GNr   83 (238)
T KOG0048|consen    4 NPELVKGPWTQEEDLTQIRSIKSFGKHNGTALPKLAGLRRCGKSCRLRWTNYLRPDLKRGNFSDEEEDLIIKLHALLGNR   83 (238)
T ss_pred             CccccCCCCChHHHHHHHHHHHHhCCCCcchhhhhcCCCccchHHHHHhhcccCCCccCCCCCHHHHHHHHHHHHHHCcH
Confidence            3334579999999999999999999999999999999 999999999999999999999999999999999999999999


Q ss_pred             hhhhchhcCCCChhHHHHHHHHHhhhhhhhhh
Q 044977           95 WTEIAKVVSGRTDNAVKNRFSTLCKKRAKYEA  126 (479)
Q Consensus        95 WskIAk~LPGRTdnqcKNRW~slLkKr~K~~~  126 (479)
                      |+.||++|||||+|+|||+|++.++|+.....
T Consensus        84 Ws~IA~~LPGRTDNeIKN~Wnt~lkkkl~~~~  115 (238)
T KOG0048|consen   84 WSLIAGRLPGRTDNEVKNHWNTHLKKKLLKMG  115 (238)
T ss_pred             HHHHHhhCCCcCHHHHHHHHHHHHHHHHHHcC
Confidence            99999999999999999999999988876544

>PLN03212 Transcription repressor MYB5; Provisional

Probab=99.97  E-value=2.4e-31  Score=259.15  Aligned_cols=111  Identities=32%  Similarity=0.626  Sum_probs=104.7

Q ss_pred             ccCCCCCCCCHHHHHHHHHHHHHhCCCChhhHhhhcC-CCChhhhhhhhhhccCCCCCCCCCCHHHHHHHHHHHHHhCCc
Q 044977           16 KKERHIVTWTQQEDDILREQISIHGTENWSIIASKFK-DKTTRQCRRRWYTYLNSDFKKGGWSPEEDMLLCEAQKIFGNR   94 (479)
Q Consensus        16 Kkkrkrg~WT~EEDekL~elV~k~G~~nWs~IAk~lp-gRT~kQCReRW~n~L~P~IkKg~WT~EEDelLLelvkk~Gnr   94 (479)
                      |...++++||+|||++|+++|++||..+|..||+.++ +|+++|||+||.+||+|.+++++||+|||++|+++|..||++
T Consensus        20 K~glKRg~WT~EEDe~L~~lV~kyG~~nW~~IAk~~g~gRT~KQCReRW~N~L~P~I~kgpWT~EED~lLlel~~~~GnK   99 (249)
T PLN03212         20 KMGMKRGPWTVEEDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRWMNYLRPSVKRGGITSDEEDLILRLHRLLGNR   99 (249)
T ss_pred             cCCCcCCCCCHHHHHHHHHHHHHhCcccHHHHHHhhhcCCCcchHHHHHHHhhchhcccCCCChHHHHHHHHHHHhcccc
Confidence            4557899999999999999999999999999999985 999999999999999999999999999999999999999999


Q ss_pred             hhhhchhcCCCChhHHHHHHHHHhhhhhhhhh
Q 044977           95 WTEIAKVVSGRTDNAVKNRFSTLCKKRAKYEA  126 (479)
Q Consensus        95 WskIAk~LPGRTdnqcKNRW~slLkKr~K~~~  126 (479)
                      |+.||++|||||+++|||||+.+++++.+...
T Consensus       100 Ws~IAk~LpGRTDnqIKNRWns~LrK~l~r~~  131 (249)
T PLN03212        100 WSLIAGRIPGRTDNEIKNYWNTHLRKKLLRQG  131 (249)
T ss_pred             HHHHHhhcCCCCHHHHHHHHHHHHhHHHHhcC
Confidence            99999999999999999999999998765543

>PLN03091 hypothetical protein; Provisional

Probab=99.96  E-value=7.9e-30  Score=264.02  Aligned_cols=112  Identities=33%  Similarity=0.661  Sum_probs=106.0

Q ss_pred             cccCCCCCCCCHHHHHHHHHHHHHhCCCChhhHhhhcC-CCChhhhhhhhhhccCCCCCCCCCCHHHHHHHHHHHHHhCC
Q 044977           15 KKKERHIVTWTQQEDDILREQISIHGTENWSIIASKFK-DKTTRQCRRRWYTYLNSDFKKGGWSPEEDMLLCEAQKIFGN   93 (479)
Q Consensus        15 kKkkrkrg~WT~EEDekL~elV~k~G~~nWs~IAk~lp-gRT~kQCReRW~n~L~P~IkKg~WT~EEDelLLelvkk~Gn   93 (479)
                      -|.+.++++||+|||++|+++|.+||..+|..||+.++ +|+++|||+||.+||+|.+++++||+|||.+|+++|++||+
T Consensus         8 ~KqklrKg~WTpEEDe~L~~~V~kyG~~nWs~IAk~~g~gRT~KQCRERW~NyLdP~IkKgpWT~EED~lLLeL~k~~Gn   87 (459)
T PLN03091          8 YKQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQQEENLIIELHAVLGN   87 (459)
T ss_pred             cCCCCcCCCCCHHHHHHHHHHHHHhCcCCHHHHhhhhccCcCcchHhHHHHhccCCcccCCCCCHHHHHHHHHHHHHhCc
Confidence            45678889999999999999999999999999999986 89999999999999999999999999999999999999999


Q ss_pred             chhhhchhcCCCChhHHHHHHHHHhhhhhhhhh
Q 044977           94 RWTEIAKVVSGRTDNAVKNRFSTLCKKRAKYEA  126 (479)
Q Consensus        94 rWskIAk~LPGRTdnqcKNRW~slLkKr~K~~~  126 (479)
                      +|++||++|||||+++|||||+.+++|+.+...
T Consensus        88 KWskIAk~LPGRTDnqIKNRWnslLKKklr~~~  120 (459)
T PLN03091         88 RWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQRG  120 (459)
T ss_pred             chHHHHHhcCCCCHHHHHHHHHHHHHHHHHHcC
Confidence            999999999999999999999999998776543

>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]

Probab=99.72  E-value=6.3e-18  Score=181.40  Aligned_cols=119  Identities=23%  Similarity=0.485  Sum_probs=110.3

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCC---ChhhHhhhcCCCChhhhhhhhhhccCCCCCCCCCCHHHHHHHHHHHHHhCC-chh
Q 044977           21 IVTWTQQEDDILREQISIHGTE---NWSIIASKFKDKTTRQCRRRWYTYLNSDFKKGGWSPEEDMLLCEAQKIFGN-RWT   96 (479)
Q Consensus        21 rg~WT~EEDekL~elV~k~G~~---nWs~IAk~lpgRT~kQCReRW~n~L~P~IkKg~WT~EEDelLLelvkk~Gn-rWs   96 (479)
                      ...||+|||.+|+.+|.+...+   +|.+|-.+|+||+..|...||...|+|.+++|+||++||.+|+.+|.+||. .|.
T Consensus       305 ekeWsEEed~kL~alV~~~~~nShI~w~kVV~Ympgr~~~qLI~R~~~~LdPsikhg~wt~~ED~~L~~AV~~Yg~kdw~  384 (939)
T KOG0049|consen  305 EKEWSEEEDTKLIALVKITSINSHIQWDKVVQYMPGRTRQQLITRFSHTLDPSVKHGRWTDQEDVLLVCAVSRYGAKDWA  384 (939)
T ss_pred             hhhcchhhhHHHHHHHHHhhccCccchHHHHHhcCCcchhhhhhhheeccCccccCCCCCCHHHHHHHHHHHHhCccchh
Confidence            3679999999999999988654   799999999999999999999999999999999999999999999999996 599


Q ss_pred             hhchhcCCCChhHHHHHHHHHhhhhhhhhhhhhhhcccccCCC
Q 044977           97 EIAKVVSGRTDNAVKNRFSTLCKKRAKYEALAKENNNAYINPN  139 (479)
Q Consensus        97 kIAk~LPGRTdnqcKNRW~slLkKr~K~~~wtkEEd~~lins~  139 (479)
                      +|-..||||++.|||.||.+.|..++|.+.|+..++..++..+
T Consensus       385 k~R~~vPnRSdsQcR~RY~nvL~~s~K~~rW~l~edeqL~~~V  427 (939)
T KOG0049|consen  385 KVRQAVPNRSDSQCRERYTNVLNRSAKVERWTLVEDEQLLYAV  427 (939)
T ss_pred             hHHHhcCCccHHHHHHHHHHHHHHhhccCceeecchHHHHHHH
Confidence            9999999999999999999999999999999988776665443

>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A

Probab=99.60  E-value=2e-15  Score=116.46  Aligned_cols=60  Identities=38%  Similarity=0.847  Sum_probs=55.0

Q ss_pred             CCHHHHHHHHHHHHHhCCCChhhHhhhcCCCChhhhhhhhhhccCCCCCCCCCCHHHHHHH
Q 044977           24 WTQQEDDILREQISIHGTENWSIIASKFKDKTTRQCRRRWYTYLNSDFKKGGWSPEEDMLL   84 (479)
Q Consensus        24 WT~EEDekL~elV~k~G~~nWs~IAk~lpgRT~kQCReRW~n~L~P~IkKg~WT~EEDelL   84 (479)
                      ||+|||++|+++|..||. +|..||+.|+.|++.+|+.||.++|+|.+++++||++||.+|
T Consensus         1 WT~eEd~~L~~~~~~~g~-~W~~Ia~~l~~Rt~~~~~~r~~~~l~~~~~~~~wt~eEd~~L   60 (60)
T PF13921_consen    1 WTKEEDELLLELVKKYGN-DWKKIAEHLGNRTPKQCRNRWRNHLRPKISRGPWTKEEDQRL   60 (60)
T ss_dssp             S-HHHHHHHHHHHHHHTS--HHHHHHHSTTS-HHHHHHHHHHTTSTTSTSSSSSHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHCc-CHHHHHHHHCcCCHHHHHHHHHHHCcccccCCCcCHHHHhcC
Confidence            999999999999999994 899999999889999999999999999999999999999986

...

>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]

Probab=99.57  E-value=3.5e-15  Score=160.59  Aligned_cols=96  Identities=27%  Similarity=0.516  Sum_probs=90.2

Q ss_pred             cCCCCCCCCHHHHHHHHHHHHHhCCCChhhHhhhcCCCChhhhhhhhhhccCCCCCCCCCCHHHHHHHHHHHHHhC-Cch
Q 044977           17 KERHIVTWTQQEDDILREQISIHGTENWSIIASKFKDKTTRQCRRRWYTYLNSDFKKGGWSPEEDMLLCEAQKIFG-NRW   95 (479)
Q Consensus        17 kkrkrg~WT~EEDekL~elV~k~G~~nWs~IAk~lpgRT~kQCReRW~n~L~P~IkKg~WT~EEDelLLelvkk~G-nrW   95 (479)
                      +..+.|+||.+||.+|..+|.+||...|.+|-..+|+|+..|||+||+|.|+...+++.||-.||+.|+.++.+|| ++|
T Consensus       356 Psikhg~wt~~ED~~L~~AV~~Yg~kdw~k~R~~vPnRSdsQcR~RY~nvL~~s~K~~rW~l~edeqL~~~V~~YG~g~W  435 (939)
T KOG0049|consen  356 PSVKHGRWTDQEDVLLVCAVSRYGAKDWAKVRQAVPNRSDSQCRERYTNVLNRSAKVERWTLVEDEQLLYAVKVYGKGNW  435 (939)
T ss_pred             ccccCCCCCCHHHHHHHHHHHHhCccchhhHHHhcCCccHHHHHHHHHHHHHHhhccCceeecchHHHHHHHHHHccchH
Confidence            3467899999999999999999999999999999999999999999999999999999999999999999999999 789


Q ss_pred             hhhchhcCCCChhHHHH
Q 044977           96 TEIAKVVSGRTDNAVKN  112 (479)
Q Consensus        96 skIAk~LPGRTdnqcKN  112 (479)
                      .+||..||.||..|...
T Consensus       436 akcA~~Lp~~t~~q~~r  452 (939)
T KOG0049|consen  436 AKCAMLLPKKTSRQLRR  452 (939)
T ss_pred             HHHHHHccccchhHHHH
Confidence            99999999999955433

>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]

Probab=99.55  E-value=4.1e-15  Score=158.32  Aligned_cols=110  Identities=30%  Similarity=0.518  Sum_probs=104.6

Q ss_pred             ccccCCCCCCCCHHHHHHHHHHHHHhCCCChhhHhhhcCCCChhhhhhhhhhccCCCCCCCCCCHHHHHHHHHHHHHhCC
Q 044977           14 SKKKERHIVTWTQQEDDILREQISIHGTENWSIIASKFKDKTTRQCRRRWYTYLNSDFKKGGWSPEEDMLLCEAQKIFGN   93 (479)
Q Consensus        14 skKkkrkrg~WT~EEDekL~elV~k~G~~nWs~IAk~lpgRT~kQCReRW~n~L~P~IkKg~WT~EEDelLLelvkk~Gn   93 (479)
                      ....+++.|.|+..||+.|..+|+.+|..+|+.||..+..|+++||+.||+++++|.+++..|+.+||..|+.+...+|.
T Consensus        13 ~~~~~~k~gsw~~~EDe~l~~~vk~l~~nnws~vas~~~~~~~kq~~~rw~~~lnp~lk~~~~~~eed~~li~l~~~~~~   92 (512)
T COG5147          13 LMQTKRKGGSWKRTEDEDLKALVKKLGPNNWSKVASLLISSTGKQSSNRWNNHLNPQLKKKNWSEEEDEQLIDLDKELGT   92 (512)
T ss_pred             cccceecCCCCCCcchhHHHHHHhhcccccHHHHHHHhcccccccccchhhhhhchhcccccccHHHHHHHHHHHHhcCc
Confidence            36677888899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chhhhchhcCCCChhHHHHHHHHHhhhhhh
Q 044977           94 RWTEIAKVVSGRTDNAVKNRFSTLCKKRAK  123 (479)
Q Consensus        94 rWskIAk~LPGRTdnqcKNRW~slLkKr~K  123 (479)
                      +|+.||..++|||..+|.+||...+....+
T Consensus        93 ~wstia~~~d~rt~~~~~ery~~~~~~~~s  122 (512)
T COG5147          93 QWSTIADYKDRRTAQQCVERYVNTLEDLSS  122 (512)
T ss_pred             hhhhhccccCccchHHHHHHHHHHhhhhhc
Confidence            999999999999999999999998876554

>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]

Probab=99.50  E-value=1.6e-14  Score=152.69  Aligned_cols=105  Identities=34%  Similarity=0.631  Sum_probs=99.5

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCChhhHhhhcCCCChhhhhhhhhhccCCCCCCCCCCHHHHHHHHHHHHHhCCchhhh
Q 044977           19 RHIVTWTQQEDDILREQISIHGTENWSIIASKFKDKTTRQCRRRWYTYLNSDFKKGGWSPEEDMLLCEAQKIFGNRWTEI   98 (479)
Q Consensus        19 rkrg~WT~EEDekL~elV~k~G~~nWs~IAk~lpgRT~kQCReRW~n~L~P~IkKg~WT~EEDelLLelvkk~GnrWskI   98 (479)
                      .+.|.|+.-||+.|..+|.+||...|+.|++.++.++++||+.||..+++|.+++..|+.+||+.|+.+.+.+...|..|
T Consensus         5 ~kggvwrntEdeilkaav~kyg~nqws~i~sll~~kt~rqC~~rw~e~ldp~i~~tews~eederlLhlakl~p~qwrtI   84 (617)
T KOG0050|consen    5 IKGGVWRNTEDEVLKAAVMKYGKNQWSRIASLLNRKTARQCKARWEEWLDPAIKKTEWSREEDERLLHLAKLEPTQWRTI   84 (617)
T ss_pred             EecceecccHHHHHHHHHHHcchHHHHHHHHHHhhcchhHHHHHHHHHhCHHHhhhhhhhhHHHHHHHHHHhcCCccchH
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chhcCCCChhHHHHHHHHHhhhhhhh
Q 044977           99 AKVVSGRTDNAVKNRFSTLCKKRAKY  124 (479)
Q Consensus        99 Ak~LPGRTdnqcKNRW~slLkKr~K~  124 (479)
                      |..| |||.++|-.||++++.....+
T Consensus        85 a~i~-gr~~~qc~eRy~~ll~~~~s~  109 (617)
T KOG0050|consen   85 ADIM-GRTSQQCLERYNNLLDVYVSY  109 (617)
T ss_pred             HHHh-hhhHHHHHHHHHHHHHHHHhh
Confidence            9999 999999999999988764433

>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A

Probab=99.38  E-value=1.9e-13  Score=105.37  Aligned_cols=59  Identities=32%  Similarity=0.582  Sum_probs=52.0

Q ss_pred             CCHHHHHHHHHHHHHhCCchhhhchhcCCCChhHHHHHHHHHhhhhhhhhhhhhhhccc
Q 044977           76 WSPEEDMLLCEAQKIFGNRWTEIAKVVSGRTDNAVKNRFSTLCKKRAKYEALAKENNNA  134 (479)
Q Consensus        76 WT~EEDelLLelvkk~GnrWskIAk~LPGRTdnqcKNRW~slLkKr~K~~~wtkEEd~~  134 (479)
                      ||++||.+|+++|..||++|..||.+|+.||+.+|++||+..+++..+..+|+.+++..
T Consensus         1 WT~eEd~~L~~~~~~~g~~W~~Ia~~l~~Rt~~~~~~r~~~~l~~~~~~~~wt~eEd~~   59 (60)
T PF13921_consen    1 WTKEEDELLLELVKKYGNDWKKIAEHLGNRTPKQCRNRWRNHLRPKISRGPWTKEEDQR   59 (60)
T ss_dssp             S-HHHHHHHHHHHHHHTS-HHHHHHHSTTS-HHHHHHHHHHTTSTTSTSSSSSHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHCcCHHHHHHHHCcCCHHHHHHHHHHHCcccccCCCcCHHHHhc
Confidence            99999999999999999999999999966999999999999888888899999888754

...

>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins

Probab=99.35  E-value=7.5e-13  Score=98.86  Aligned_cols=47  Identities=36%  Similarity=0.724  Sum_probs=43.0

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCChhhHhhhcC-CCChhhhhhhhhhcc
Q 044977           21 IVTWTQQEDDILREQISIHGTENWSIIASKFK-DKTTRQCRRRWYTYL   67 (479)
Q Consensus        21 rg~WT~EEDekL~elV~k~G~~nWs~IAk~lp-gRT~kQCReRW~n~L   67 (479)
                      |++||+|||++|+++|..||.++|..||..|+ +||+.||+.||.+++
T Consensus         1 r~~Wt~eE~~~l~~~v~~~g~~~W~~Ia~~~~~~Rt~~qc~~~~~~~~   48 (48)
T PF00249_consen    1 RGPWTEEEDEKLLEAVKKYGKDNWKKIAKRMPGGRTAKQCRSRYQNLL   48 (48)
T ss_dssp             S-SS-HHHHHHHHHHHHHSTTTHHHHHHHHHSSSSTHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHhCCcHHHHHHHHcCCCCCHHHHHHHHHhhC
Confidence            57999999999999999999888999999999 999999999999875

These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....

>PLN03212 Transcription repressor MYB5; Provisional

Probab=99.33  E-value=7.5e-13  Score=130.18  Aligned_cols=81  Identities=23%  Similarity=0.415  Sum_probs=70.5

Q ss_pred             cCCCChhhhhhhhhhccCCCCCCCCCCHHHHHHHHHHHHHhC-Cchhhhchhc-CCCChhHHHHHHHHHhhhhhhhhhhh
Q 044977           51 FKDKTTRQCRRRWYTYLNSDFKKGGWSPEEDMLLCEAQKIFG-NRWTEIAKVV-SGRTDNAVKNRFSTLCKKRAKYEALA  128 (479)
Q Consensus        51 lpgRT~kQCReRW~n~L~P~IkKg~WT~EEDelLLelvkk~G-nrWskIAk~L-PGRTdnqcKNRW~slLkKr~K~~~wt  128 (479)
                      ++.|+..-|.       ++.+++++||+|||++|+++|++|| ++|..||+.+ +|||+.|||.||.++|++.+++++|+
T Consensus        10 ~~~~~~pcc~-------K~glKRg~WT~EEDe~L~~lV~kyG~~nW~~IAk~~g~gRT~KQCReRW~N~L~P~I~kgpWT   82 (249)
T PLN03212         10 VSKKTTPCCT-------KMGMKRGPWTVEEDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRWMNYLRPSVKRGGIT   82 (249)
T ss_pred             CCCCCCCCcc-------cCCCcCCCCCHHHHHHHHHHHHHhCcccHHHHHHhhhcCCCcchHHHHHHHhhchhcccCCCC
Confidence            4455554442       4578899999999999999999999 5899999998 69999999999999999999999999


Q ss_pred             hhhcccccCC
Q 044977          129 KENNNAYINP  138 (479)
Q Consensus       129 kEEd~~lins  138 (479)
                      .+|+..++..
T Consensus        83 ~EED~lLlel   92 (249)
T PLN03212         83 SDEEDLILRL   92 (249)
T ss_pred             hHHHHHHHHH
Confidence            9999877654

>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins

Probab=99.29  E-value=3.3e-12  Score=95.41  Aligned_cols=46  Identities=41%  Similarity=0.774  Sum_probs=41.8

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCc-hhhhchhcC-CCChhHHHHHHHHHh
Q 044977           73 KGGWSPEEDMLLCEAQKIFGNR-WTEIAKVVS-GRTDNAVKNRFSTLC  118 (479)
Q Consensus        73 Kg~WT~EEDelLLelvkk~Gnr-WskIAk~LP-GRTdnqcKNRW~slL  118 (479)
                      |++||++||++|++++.+||.+ |..||..|| |||..||++||++++
T Consensus         1 r~~Wt~eE~~~l~~~v~~~g~~~W~~Ia~~~~~~Rt~~qc~~~~~~~~   48 (48)
T PF00249_consen    1 RGPWTEEEDEKLLEAVKKYGKDNWKKIAKRMPGGRTAKQCRSRYQNLL   48 (48)
T ss_dssp             S-SS-HHHHHHHHHHHHHSTTTHHHHHHHHHSSSSTHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHhCCcHHHHHHHHcCCCCCHHHHHHHHHhhC
Confidence            5799999999999999999988 999999999 999999999998764

These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....

>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]

Probab=99.26  E-value=1e-11  Score=134.27  Aligned_cols=102  Identities=23%  Similarity=0.513  Sum_probs=91.4

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCChhhHhhhcCCCChhhhhhhhhhccCCCC--CCCCCCHHHHHHHHHHHH-------H
Q 044977           20 HIVTWTQQEDDILREQISIHGTENWSIIASKFKDKTTRQCRRRWYTYLNSDF--KKGGWSPEEDMLLCEAQK-------I   90 (479)
Q Consensus        20 krg~WT~EEDekL~elV~k~G~~nWs~IAk~lpgRT~kQCReRW~n~L~P~I--kKg~WT~EEDelLLelvk-------k   90 (479)
                      .+|.||+||++.|..++..|| +.|..|++.|+ |.+..||+||.+|..+.-  +++.||-||.+.|+.+|.       .
T Consensus       383 ~rg~wt~ee~eeL~~l~~~~g-~~W~~Ig~~lg-r~P~~crd~wr~~~~~g~~~~r~~Ws~eEe~~Llk~V~~~~~~~~q  460 (607)
T KOG0051|consen  383 KRGKWTPEEEEELKKLVVEHG-NDWKEIGKALG-RMPMDCRDRWRQYVKCGSKRNRGAWSIEEEEKLLKTVNEMIREALQ  460 (607)
T ss_pred             ccCCCCcchHHHHHHHHHHhc-ccHHHHHHHHc-cCcHHHHHHHHHhhccccccccCcchHHHHHHHHHHHHHHHHHhhc
Confidence            689999999999999999999 48999999887 999999999999999884  899999999999999995       2


Q ss_pred             h-------------------CCchhhhchhcCCCChhHHHHHHHHHhhhhhh
Q 044977           91 F-------------------GNRWTEIAKVVSGRTDNAVKNRFSTLCKKRAK  123 (479)
Q Consensus        91 ~-------------------GnrWskIAk~LPGRTdnqcKNRW~slLkKr~K  123 (479)
                      +                   +-+|+.|++.+..|+.-+||.+|..++.....
T Consensus       461 ~q~~n~~~~~q~sp~s~~~d~I~Wt~vse~~~TR~~~qCr~Kw~kl~~~~s~  512 (607)
T KOG0051|consen  461 PQASNTDTGLQESPESTLKDDINWTLVSEMLGTRSRIQCRYKWYKLTTSPSF  512 (607)
T ss_pred             ccccccchhhhcCccccccCCcchhhhhHhhcCCCcchHHHHHHHHHhhHHh
Confidence            2                   12599999999999999999999998876543

>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]

Probab=99.25  E-value=2.8e-12  Score=124.54  Aligned_cols=70  Identities=23%  Similarity=0.415  Sum_probs=63.8

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCC-chhhhchhcC-CCChhHHHHHHHHHhhhhhhhhhhhhhhcccccCC
Q 044977           69 SDFKKGGWSPEEDMLLCEAQKIFGN-RWTEIAKVVS-GRTDNAVKNRFSTLCKKRAKYEALAKENNNAYINP  138 (479)
Q Consensus        69 P~IkKg~WT~EEDelLLelvkk~Gn-rWskIAk~LP-GRTdnqcKNRW~slLkKr~K~~~wtkEEd~~lins  138 (479)
                      |.+.+|+||+|||.+|+++|.+||. +|..||+.++ ||++.+||-||.++|++.+|++.|+.+|+..++..
T Consensus         5 ~~~~kGpWt~EED~~L~~~V~~~G~~~W~~i~k~~gl~R~GKSCRlRW~NyLrP~ikrg~fT~eEe~~Ii~l   76 (238)
T KOG0048|consen    5 PELVKGPWTQEEDLTQIRSIKSFGKHNGTALPKLAGLRRCGKSCRLRWTNYLRPDLKRGNFSDEEEDLIIKL   76 (238)
T ss_pred             ccccCCCCChHHHHHHHHHHHHhCCCCcchhhhhcCCCccchHHHHHhhcccCCCccCCCCCHHHHHHHHHH
Confidence            4455799999999999999999995 6999999998 99999999999999999999999999998766643

>PLN03091 hypothetical protein; Provisional

Probab=99.17  E-value=1.2e-11  Score=129.74  Aligned_cols=72  Identities=24%  Similarity=0.448  Sum_probs=65.9

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhC-Cchhhhchhc-CCCChhHHHHHHHHHhhhhhhhhhhhhhhcccccCCC
Q 044977           68 NSDFKKGGWSPEEDMLLCEAQKIFG-NRWTEIAKVV-SGRTDNAVKNRFSTLCKKRAKYEALAKENNNAYINPN  139 (479)
Q Consensus        68 ~P~IkKg~WT~EEDelLLelvkk~G-nrWskIAk~L-PGRTdnqcKNRW~slLkKr~K~~~wtkEEd~~lins~  139 (479)
                      +..++++.||+|||++|+++|.+|| ++|..||+.+ +|||+.|||.||.++|++.+++++|+++|+..++...
T Consensus         9 KqklrKg~WTpEEDe~L~~~V~kyG~~nWs~IAk~~g~gRT~KQCRERW~NyLdP~IkKgpWT~EED~lLLeL~   82 (459)
T PLN03091          9 KQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQQEENLIIELH   82 (459)
T ss_pred             CCCCcCCCCCHHHHHHHHHHHHHhCcCCHHHHhhhhccCcCcchHhHHHHhccCCcccCCCCCHHHHHHHHHHH
Confidence            3578899999999999999999999 4799999988 5999999999999999999999999999998877544

>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Probab=99.14  E-value=6.5e-11  Score=84.63  Aligned_cols=47  Identities=47%  Similarity=0.831  Sum_probs=44.3

Q ss_pred             CCCCCHHHHHHHHHHHHHhC-CchhhhchhcCCCChhHHHHHHHHHhh
Q 044977           73 KGGWSPEEDMLLCEAQKIFG-NRWTEIAKVVSGRTDNAVKNRFSTLCK  119 (479)
Q Consensus        73 Kg~WT~EEDelLLelvkk~G-nrWskIAk~LPGRTdnqcKNRW~slLk  119 (479)
                      +++||++||.+|+.++..|| ++|..||..|++||+.+|++||+.+++
T Consensus         1 ~~~Wt~~E~~~l~~~~~~~g~~~w~~Ia~~~~~rt~~~~~~~~~~~~~   48 (49)
T smart00717        1 KGEWTEEEDELLIELVKKYGKNNWEKIAKELPGRTAEQCRERWNNLLK   48 (49)
T ss_pred             CCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCHHHHHHHHHHHcC
Confidence            46899999999999999999 999999999999999999999998764

>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Probab=99.05  E-value=3.3e-10  Score=80.96  Aligned_cols=48  Identities=38%  Similarity=0.778  Sum_probs=44.8

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCChhhHhhhcCCCChhhhhhhhhhccC
Q 044977           21 IVTWTQQEDDILREQISIHGTENWSIIASKFKDKTTRQCRRRWYTYLN   68 (479)
Q Consensus        21 rg~WT~EEDekL~elV~k~G~~nWs~IAk~lpgRT~kQCReRW~n~L~   68 (479)
                      +++||++||.+|..++..||..+|..||..|++|++.+|+.||.+++.
T Consensus         1 ~~~Wt~~E~~~l~~~~~~~g~~~w~~Ia~~~~~rt~~~~~~~~~~~~~   48 (49)
T smart00717        1 KGEWTEEEDELLIELVKKYGKNNWEKIAKELPGRTAEQCRERWNNLLK   48 (49)
T ss_pred             CCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCHHHHHHHHHHHcC
Confidence            468999999999999999997799999999999999999999998765

>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]

Probab=99.05  E-value=8.4e-11  Score=127.31  Aligned_cols=123  Identities=23%  Similarity=0.370  Sum_probs=104.2

Q ss_pred             CCCCCCCHHHHHHHHHHHHHh----CC-------------------CChhhHhhhcCCCChhhhhh---hhhhccCCCCC
Q 044977           19 RHIVTWTQQEDDILREQISIH----GT-------------------ENWSIIASKFKDKTTRQCRR---RWYTYLNSDFK   72 (479)
Q Consensus        19 rkrg~WT~EEDekL~elV~k~----G~-------------------~nWs~IAk~lpgRT~kQCRe---RW~n~L~P~Ik   72 (479)
                      ...+.|+.+||..|...|..|    |-                   +-|+.|.+.||.|+.+..+.   |-++.+.+  .
T Consensus       306 ~~~~~F~~eed~ale~~V~~y~~~eg~s~~q~~~~i~s~~~~~~~~~l~n~~~~~Lp~R~~~siy~~~rR~y~~FE~--~  383 (607)
T KOG0051|consen  306 INLKKFSKEEDAALENFVNEYLANEGWSSEQFCQRIWSKDWKTIIRNLYNNLYKLLPYRDRKSIYHHLRRAYTPFEN--K  383 (607)
T ss_pred             hhhhhccHHHHHHHHHHHHHHHHhhCcchhhhhhheeccCcchHHHHHHHhhhhhcCcccchhHHHHHHhcCCcccc--c
Confidence            445789999999999999877    11                   12788999999999888777   44445554  8


Q ss_pred             CCCCCHHHHHHHHHHHHHhCCchhhhchhcCCCChhHHHHHHHHHhhhh--hhhhhhhhhhcccccCCCCcccc
Q 044977           73 KGGWSPEEDMLLCEAQKIFGNRWTEIAKVVSGRTDNAVKNRFSTLCKKR--AKYEALAKENNNAYINPNNKRIL  144 (479)
Q Consensus        73 Kg~WT~EEDelLLelvkk~GnrWskIAk~LPGRTdnqcKNRW~slLkKr--~K~~~wtkEEd~~lins~~Kril  144 (479)
                      +|.||++|++.|..+|.++|+.|..|++.| ||.+.+|+.||+.+.+..  .+.++|+.+|...++..++..+.
T Consensus       384 rg~wt~ee~eeL~~l~~~~g~~W~~Ig~~l-gr~P~~crd~wr~~~~~g~~~~r~~Ws~eEe~~Llk~V~~~~~  456 (607)
T KOG0051|consen  384 RGKWTPEEEEELKKLVVEHGNDWKEIGKAL-GRMPMDCRDRWRQYVKCGSKRNRGAWSIEEEEKLLKTVNEMIR  456 (607)
T ss_pred             cCCCCcchHHHHHHHHHHhcccHHHHHHHH-ccCcHHHHHHHHHhhccccccccCcchHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999 999999999999999876  48899999999888887765544

>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains

Probab=98.99  E-value=6.3e-10  Score=78.57  Aligned_cols=43  Identities=47%  Similarity=0.825  Sum_probs=41.4

Q ss_pred             CCCHHHHHHHHHHHHHhC-CchhhhchhcCCCChhHHHHHHHHH
Q 044977           75 GWSPEEDMLLCEAQKIFG-NRWTEIAKVVSGRTDNAVKNRFSTL  117 (479)
Q Consensus        75 ~WT~EEDelLLelvkk~G-nrWskIAk~LPGRTdnqcKNRW~sl  117 (479)
                      +||++||.+|+.++..|| ++|..||..+++||..+|++||.++
T Consensus         1 ~Wt~eE~~~l~~~~~~~g~~~w~~Ia~~~~~rs~~~~~~~~~~~   44 (45)
T cd00167           1 PWTEEEDELLLEAVKKYGKNNWEKIAKELPGRTPKQCRERWRNL   44 (45)
T ss_pred             CCCHHHHHHHHHHHHHHCcCCHHHHHhHcCCCCHHHHHHHHHHh
Confidence            599999999999999999 9999999999999999999999875

Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.

>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains

Probab=98.92  E-value=1.7e-09  Score=76.36  Aligned_cols=45  Identities=40%  Similarity=0.888  Sum_probs=42.4

Q ss_pred             CCCHHHHHHHHHHHHHhCCCChhhHhhhcCCCChhhhhhhhhhcc
Q 044977           23 TWTQQEDDILREQISIHGTENWSIIASKFKDKTTRQCRRRWYTYL   67 (479)
Q Consensus        23 ~WT~EEDekL~elV~k~G~~nWs~IAk~lpgRT~kQCReRW~n~L   67 (479)
                      +||+|||..|..++..||..+|..||..+++|++.+|+.||.+++
T Consensus         1 ~Wt~eE~~~l~~~~~~~g~~~w~~Ia~~~~~rs~~~~~~~~~~~~   45 (45)
T cd00167           1 PWTEEEDELLLEAVKKYGKNNWEKIAKELPGRTPKQCRERWRNLL   45 (45)
T ss_pred             CCCHHHHHHHHHHHHHHCcCCHHHHHhHcCCCCHHHHHHHHHHhC
Confidence            599999999999999999779999999999999999999998753

Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.

>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]

Probab=98.17  E-value=3.5e-07  Score=98.47  Aligned_cols=98  Identities=26%  Similarity=0.564  Sum_probs=86.1

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCChhhHhhhcCCCChhhhhhhhhhccCC--CCCCCCCCHHHHHHHHHHHHHhC-----
Q 044977           20 HIVTWTQQEDDILREQISIHGTENWSIIASKFKDKTTRQCRRRWYTYLNS--DFKKGGWSPEEDMLLCEAQKIFG-----   92 (479)
Q Consensus        20 krg~WT~EEDekL~elV~k~G~~nWs~IAk~lpgRT~kQCReRW~n~L~P--~IkKg~WT~EEDelLLelvkk~G-----   92 (479)
                      .++.||+||+..|...+..+| +.|..|.+.+. |-+..||+||.+|..+  .+++++|+.||+.+|...+...-     
T Consensus       290 ~~~~wt~e~~~eL~~~~~~~~-~~w~~ig~~~~-rmp~~crd~wr~~~~~g~t~~~~~ws~eee~~l~~vv~e~~~~~~~  367 (512)
T COG5147         290 QRGKWTKEEEQELAKLVVEHG-GSWTEIGKLLG-RMPNDCRDRWRDYVKCGDTLKRNRWSIEEEELLDKVVNEMRLEAQQ  367 (512)
T ss_pred             hhccCcccccccccccccccc-chhhHhhhhhc-cCcHHHHHHHhhhccccCccCCCCCchhhhhhHHHHHHHHHHHHhh
Confidence            578999999999999999999 58999998665 8899999999999998  57788999999999998876432     


Q ss_pred             ---CchhhhchhcCCCChhHHHHHHHHHhh
Q 044977           93 ---NRWTEIAKVVSGRTDNAVKNRFSTLCK  119 (479)
Q Consensus        93 ---nrWskIAk~LPGRTdnqcKNRW~slLk  119 (479)
                         -.|..|++.++.|....|+.++..+..
T Consensus       368 ~~~~~~~li~~~~~~~~~~~~~~~~~~~~~  397 (512)
T COG5147         368 SSRILWLLIAQNIRNRLQHHCRDKYGVLIS  397 (512)
T ss_pred             hhhhhHHHHHHhhhccccCCCCCccccccc
Confidence               259999999999999999998876654

>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class

Probab=97.63  E-value=0.00011  Score=58.29  Aligned_cols=49  Identities=22%  Similarity=0.367  Sum_probs=43.7

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCCh---hhHhhhcC-CC-Chhhhhhhhhhcc
Q 044977           19 RHIVTWTQQEDDILREQISIHGTENW---SIIASKFK-DK-TTRQCRRRWYTYL   67 (479)
Q Consensus        19 rkrg~WT~EEDekL~elV~k~G~~nW---s~IAk~lp-gR-T~kQCReRW~n~L   67 (479)
                      +++..||+||..+++++|+.+|.++|   ..|++.|. .| |..||+.+...|.
T Consensus         1 k~r~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~~~~lT~~qV~SH~QKy~   54 (57)
T TIGR01557         1 KPRVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYR   54 (57)
T ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCcccchHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence            35678999999999999999998899   99999987 46 9999999988764

This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.

>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]

Probab=97.61  E-value=3.3e-05  Score=83.25  Aligned_cols=66  Identities=26%  Similarity=0.484  Sum_probs=60.7

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhC-CchhhhchhcCCCChhHHHHHHHHHhhhhhhhhhhhhhhccccc
Q 044977           71 FKKGGWSPEEDMLLCEAQKIFG-NRWTEIAKVVSGRTDNAVKNRFSTLCKKRAKYEALAKENNNAYI  136 (479)
Q Consensus        71 IkKg~WT~EEDelLLelvkk~G-nrWskIAk~LPGRTdnqcKNRW~slLkKr~K~~~wtkEEd~~li  136 (479)
                      ++-|-|+.-||++|-.++.+|| +.|++|+..++-.|..||++||...+.+.++...|+.+++..++
T Consensus         5 ~kggvwrntEdeilkaav~kyg~nqws~i~sll~~kt~rqC~~rw~e~ldp~i~~tews~eederlL   71 (617)
T KOG0050|consen    5 IKGGVWRNTEDEVLKAAVMKYGKNQWSRIASLLNRKTARQCKARWEEWLDPAIKKTEWSREEDERLL   71 (617)
T ss_pred             EecceecccHHHHHHHHHHHcchHHHHHHHHHHhhcchhHHHHHHHHHhCHHHhhhhhhhhHHHHHH
Confidence            4567899999999999999999 67999999999999999999999999999999999998876554

>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]

Probab=97.49  E-value=9e-05  Score=78.49  Aligned_cols=48  Identities=27%  Similarity=0.492  Sum_probs=44.9

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCChhhHhhhcCCCChhhhhhhhhhccC
Q 044977           21 IVTWTQQEDDILREQISIHGTENWSIIASKFKDKTTRQCRRRWYTYLN   68 (479)
Q Consensus        21 rg~WT~EEDekL~elV~k~G~~nWs~IAk~lpgRT~kQCReRW~n~L~   68 (479)
                      ...||.+|+-+|++++..||.|||..||.+++.|++.+|+++|.+++-
T Consensus        72 ~~~WtadEEilLLea~~t~G~GNW~dIA~hIGtKtkeeck~hy~k~fv  119 (438)
T KOG0457|consen   72 DPSWTADEEILLLEAAETYGFGNWQDIADHIGTKTKEECKEHYLKHFV  119 (438)
T ss_pred             CCCCChHHHHHHHHHHHHhCCCcHHHHHHHHcccchHHHHHHHHHHHh
Confidence            457999999999999999999999999999999999999999998653

>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class

Probab=97.28  E-value=0.00054  Score=54.30  Aligned_cols=47  Identities=15%  Similarity=0.317  Sum_probs=41.0

Q ss_pred             CCCCCHHHHHHHHHHHHHhCC-ch---hhhchhcC-CC-ChhHHHHHHHHHhh
Q 044977           73 KGGWSPEEDMLLCEAQKIFGN-RW---TEIAKVVS-GR-TDNAVKNRFSTLCK  119 (479)
Q Consensus        73 Kg~WT~EEDelLLelvkk~Gn-rW---skIAk~LP-GR-TdnqcKNRW~slLk  119 (479)
                      +-.||+||...+++++..+|. +|   ..|+..|. .| |..+|+.|++.+.-
T Consensus         3 r~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~~~~lT~~qV~SH~QKy~~   55 (57)
T TIGR01557         3 RVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYRL   55 (57)
T ss_pred             CCCCCHHHHHHHHHHHHHhCCCcccchHHHHHHcCCCCCCHHHHHHHHHHHHc
Confidence            557999999999999999996 99   99999883 45 99999999987653

This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.

>PF13325 MCRS_N: N-terminal region of micro-spherule protein

Probab=97.17  E-value=0.0019  Score=62.88  Aligned_cols=97  Identities=20%  Similarity=0.378  Sum_probs=73.2

Q ss_pred             CCCHHHHHHHHHHHHHhCCCChhhHhhhcC---CCChhhhhhhhhhcc----------------CCCC-----CCCCCCH
Q 044977           23 TWTQQEDDILREQISIHGTENWSIIASKFK---DKTTRQCRRRWYTYL----------------NSDF-----KKGGWSP   78 (479)
Q Consensus        23 ~WT~EEDekL~elV~k~G~~nWs~IAk~lp---gRT~kQCReRW~n~L----------------~P~I-----kKg~WT~   78 (479)
                      +|++++|-+|+.+|..-.  +-..|+..++   .-|-..+.+||+..|                +|..     .+..||.
T Consensus         1 rW~~~DDl~Li~av~~~~--~L~~v~~gvkFS~~fT~~Ei~~RW~~llyd~~is~~a~~~m~~l~p~~~~~iq~kalfS~   78 (199)
T PF13325_consen    1 RWKPEDDLLLINAVEQTN--DLESVHLGVKFSCKFTLQEIEERWYALLYDPVISRIAVAAMRNLHPELIAAIQSKALFSK   78 (199)
T ss_pred             CCCchhhHHHHHHHHHhc--CHHHHHccCCcCCcCcHHHHHHHHHHHHcChhhHHHHHHHHHhCCcchhhcccccCCCCH
Confidence            599999999999998776  5777777665   237889999998553                3332     3568999


Q ss_pred             HHHHHHHHHHHHhCC---chhhhc----hhc-CCCChhHHHHHHHHHhhhh
Q 044977           79 EEDMLLCEAQKIFGN---RWTEIA----KVV-SGRTDNAVKNRFSTLCKKR  121 (479)
Q Consensus        79 EEDelLLelvkk~Gn---rWskIA----k~L-PGRTdnqcKNRW~slLkKr  121 (479)
                      +|+++|........+   .+.+|=    ..| ++||+.++.+||+.+.+..
T Consensus        79 ~EE~lL~~v~s~~~p~le~Fq~LL~~n~~vFh~sRTak~L~~HW~lmkqy~  129 (199)
T PF13325_consen   79 EEEQLLGTVASSSQPSLETFQELLDKNRSVFHPSRTAKSLQDHWRLMKQYH  129 (199)
T ss_pred             HHHHHHHhhhhccCCcHHHHHHHHHhChhhhccccCHHHHHHHHHHHHHhc
Confidence            999999997766543   466552    234 8999999999999765543

>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]

Probab=97.17  E-value=0.00046  Score=73.29  Aligned_cols=48  Identities=25%  Similarity=0.604  Sum_probs=43.7

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhC-CchhhhchhcCCCChhHHHHHHHHHh
Q 044977           71 FKKGGWSPEEDMLLCEAQKIFG-NRWTEIAKVVSGRTDNAVKNRFSTLC  118 (479)
Q Consensus        71 IkKg~WT~EEDelLLelvkk~G-nrWskIAk~LPGRTdnqcKNRW~slL  118 (479)
                      +-...||.+|+.+|++++..|| ++|..||.++..||..+||.||.+++
T Consensus        70 i~~~~WtadEEilLLea~~t~G~GNW~dIA~hIGtKtkeeck~hy~k~f  118 (438)
T KOG0457|consen   70 ILDPSWTADEEILLLEAAETYGFGNWQDIADHIGTKTKEECKEHYLKHF  118 (438)
T ss_pred             CCCCCCChHHHHHHHHHHHHhCCCcHHHHHHHHcccchHHHHHHHHHHH
Confidence            3456799999999999999999 99999999999999999999997654

>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family

Probab=96.80  E-value=0.0014  Score=61.82  Aligned_cols=53  Identities=26%  Similarity=0.514  Sum_probs=46.0

Q ss_pred             CCCCCCHHHHHHHHHHHHHh---CC----chhhhchhcCCCChhHHHHHHHHHhhhhhhhh
Q 044977           72 KKGGWSPEEDMLLCEAQKIF---GN----RWTEIAKVVSGRTDNAVKNRFSTLCKKRAKYE  125 (479)
Q Consensus        72 kKg~WT~EEDelLLelvkk~---Gn----rWskIAk~LPGRTdnqcKNRW~slLkKr~K~~  125 (479)
                      +...||.|||.+|-+.|-+|   |+    -...++..+ +||..+|.=|||+++|+++...
T Consensus         3 RQDAWT~eeDlLLAEtVLrhIReG~TQL~AFeEvg~~L-~RTsAACGFRWNs~VRkqY~~~   62 (161)
T TIGR02894         3 RQDAWTHEEDLLLAETVLRHIREGSTQLSAFEEVGRAL-NRTAAACGFRWNAYVRKQYEEA   62 (161)
T ss_pred             cccccccHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH-cccHHHhcchHHHHHHHHHHHH
Confidence            45789999999999999887   42    388999999 9999999999999999987544

In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.

>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A

Probab=96.55  E-value=0.0023  Score=52.37  Aligned_cols=48  Identities=38%  Similarity=0.609  Sum_probs=34.6

Q ss_pred             CCCCCHHHHHHHHHHHHH------hC--C------chhhhchhc----CCCChhHHHHHHHHHhhh
Q 044977           73 KGGWSPEEDMLLCEAQKI------FG--N------RWTEIAKVV----SGRTDNAVKNRFSTLCKK  120 (479)
Q Consensus        73 Kg~WT~EEDelLLelvkk------~G--n------rWskIAk~L----PGRTdnqcKNRW~slLkK  120 (479)
                      |..||.+|...|++++..      ++  +      -|..||..|    ..||+.||+++|.++.+.
T Consensus         1 R~~Wt~~et~~Li~~~~~~~~~~~~~~~~~~~~~~~w~~Ia~~l~~~G~~rt~~qc~~Kw~~L~~~   66 (90)
T PF13837_consen    1 RRNWTDEETKLLIELWKENLMELRFDNGGKKRNKKVWKEIAEELAEHGYNRTPEQCRNKWKNLKKK   66 (90)
T ss_dssp             --SS-HHHHHHHHHHHHH--HHHHHHH--SS--HHHHHHHHHHHHHHC----HHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence            357999999999999877      32  1      399999987    359999999999998764

>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics]

Probab=96.53  E-value=0.0025  Score=69.37  Aligned_cols=45  Identities=27%  Similarity=0.648  Sum_probs=42.5

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCchhhhchhcCCCChhHHHHHHHHH
Q 044977           73 KGGWSPEEDMLLCEAQKIFGNRWTEIAKVVSGRTDNAVKNRFSTL  117 (479)
Q Consensus        73 Kg~WT~EEDelLLelvkk~GnrWskIAk~LPGRTdnqcKNRW~sl  117 (479)
                      ++.||.+|..+|++++..||-.|.+||.++.+||..+|-.||..+
T Consensus       253 ~~~WT~qE~lLLLE~ie~y~ddW~kVa~hVg~ks~eqCI~kFL~L  297 (506)
T KOG1279|consen  253 RPNWTEQETLLLLEAIEMYGDDWNKVADHVGTKSQEQCILKFLRL  297 (506)
T ss_pred             CCCccHHHHHHHHHHHHHhcccHHHHHhccCCCCHHHHHHHHHhc
Confidence            568999999999999999999999999999999999999999654

>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]

Probab=96.39  E-value=0.0027  Score=68.29  Aligned_cols=45  Identities=29%  Similarity=0.597  Sum_probs=42.2

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCchhhhchhcCCCChhHHHHHHHHH
Q 044977           73 KGGWSPEEDMLLCEAQKIFGNRWTEIAKVVSGRTDNAVKNRFSTL  117 (479)
Q Consensus        73 Kg~WT~EEDelLLelvkk~GnrWskIAk~LPGRTdnqcKNRW~sl  117 (479)
                      ..+||.+|..+|++.+..||..|.+||.++..||..||.-||.++
T Consensus       279 dk~WS~qE~~LLLEGIe~ygDdW~kVA~HVgtKt~EqCIl~FL~L  323 (531)
T COG5259         279 DKNWSRQELLLLLEGIEMYGDDWDKVARHVGTKTKEQCILHFLQL  323 (531)
T ss_pred             cccccHHHHHHHHHHHHHhhhhHHHHHHHhCCCCHHHHHHHHHcC
Confidence            348999999999999999999999999999999999999999654

>PF08914 Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR015010 Rap1 Myb adopts a canonical three-helix bundle tertiary structure, with the second and third helices forming a helix-turn-helix variant motif

Probab=96.24  E-value=0.0053  Score=49.91  Aligned_cols=50  Identities=22%  Similarity=0.412  Sum_probs=33.5

Q ss_pred             CCCCCHHHHHHHHHHHHHh---C---CCC--hhhHhhhcC-CCChhhhhhhhhhccCCC
Q 044977           21 IVTWTQQEDDILREQISIH---G---TEN--WSIIASKFK-DKTTRQCRRRWYTYLNSD   70 (479)
Q Consensus        21 rg~WT~EEDekL~elV~k~---G---~~n--Ws~IAk~lp-gRT~kQCReRW~n~L~P~   70 (479)
                      |.++|.|||..|..+|..+   |   .||  |..++..-+ .++..+-|+||..+|.+.
T Consensus         2 R~~fT~edD~~l~~~v~~~~~~~~~~~Gn~iwk~le~~~~t~HtwQSwR~Ry~K~L~~~   60 (65)
T PF08914_consen    2 RTPFTEEDDAALLDYVKENERQGGSVSGNKIWKELEEKHPTRHTWQSWRDRYLKHLRGR   60 (65)
T ss_dssp             -----HHHHHHHHHHHHHT--STTTTTSSHHHHHHHHS-SSS--SHHHHHHHHHHT---
T ss_pred             CCCCCHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcc
Confidence            6789999999999999665   2   223  999999988 778889999999999764

The function is unclear but it may either interact with DNA via an adaptor protein or it may be only involved in protein-protein interactions []. ; PDB: 1FEX_A.

>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]

Probab=96.15  E-value=0.0048  Score=66.44  Aligned_cols=44  Identities=30%  Similarity=0.520  Sum_probs=41.1

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCChhhHhhhcCCCChhhhhhhhhh
Q 044977           21 IVTWTQQEDDILREQISIHGTENWSIIASKFKDKTTRQCRRRWYT   65 (479)
Q Consensus        21 rg~WT~EEDekL~elV~k~G~~nWs~IAk~lpgRT~kQCReRW~n   65 (479)
                      ...||.+|..+|.+.|+.||. .|.+||.++++|+..||..|+.+
T Consensus       279 dk~WS~qE~~LLLEGIe~ygD-dW~kVA~HVgtKt~EqCIl~FL~  322 (531)
T COG5259         279 DKNWSRQELLLLLEGIEMYGD-DWDKVARHVGTKTKEQCILHFLQ  322 (531)
T ss_pred             cccccHHHHHHHHHHHHHhhh-hHHHHHHHhCCCCHHHHHHHHHc
Confidence            348999999999999999995 89999999999999999999876

>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A

Probab=96.13  E-value=0.0045  Score=50.59  Aligned_cols=45  Identities=29%  Similarity=0.605  Sum_probs=32.3

Q ss_pred             CCCCCHHHHHHHHHHHHH--h----C--CC-----ChhhHhhhcC----CCChhhhhhhhhh
Q 044977           21 IVTWTQQEDDILREQISI--H----G--TE-----NWSIIASKFK----DKTTRQCRRRWYT   65 (479)
Q Consensus        21 rg~WT~EEDekL~elV~k--~----G--~~-----nWs~IAk~lp----gRT~kQCReRW~n   65 (479)
                      |..||.+|...|+.++..  +    +  ..     -|..||..|.    .|++.||+.+|.+
T Consensus         1 R~~Wt~~et~~Li~~~~~~~~~~~~~~~~~~~~~~~w~~Ia~~l~~~G~~rt~~qc~~Kw~~   62 (90)
T PF13837_consen    1 RRNWTDEETKLLIELWKENLMELRFDNGGKKRNKKVWKEIAEELAEHGYNRTPEQCRNKWKN   62 (90)
T ss_dssp             --SS-HHHHHHHHHHHHH--HHHHHHH--SS--HHHHHHHHHHHHHHC----HHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence            357999999999998877  2    1  11     3999999985    6999999999986

>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics]

Probab=95.93  E-value=0.0083  Score=65.39  Aligned_cols=48  Identities=29%  Similarity=0.551  Sum_probs=43.5

Q ss_pred             cCCCCCCCCHHHHHHHHHHHHHhCCCChhhHhhhcCCCChhhhhhhhhh
Q 044977           17 KERHIVTWTQQEDDILREQISIHGTENWSIIASKFKDKTTRQCRRRWYT   65 (479)
Q Consensus        17 kkrkrg~WT~EEDekL~elV~k~G~~nWs~IAk~lpgRT~kQCReRW~n   65 (479)
                      ...-+..||.+|+.+|.++|+.||. .|.+||.+++.|+..||..++.+
T Consensus       249 ~~~~~~~WT~qE~lLLLE~ie~y~d-dW~kVa~hVg~ks~eqCI~kFL~  296 (506)
T KOG1279|consen  249 GESARPNWTEQETLLLLEAIEMYGD-DWNKVADHVGTKSQEQCILKFLR  296 (506)
T ss_pred             cccCCCCccHHHHHHHHHHHHHhcc-cHHHHHhccCCCCHHHHHHHHHh
Confidence            3445678999999999999999995 89999999999999999999865

>PRK13923 putative spore coat protein regulator protein YlbO; Provisional

Probab=95.52  E-value=0.014  Score=55.70  Aligned_cols=53  Identities=23%  Similarity=0.372  Sum_probs=44.2

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCCc-------hhhhchhcCCCChhHHHHHHHHHhhhhhhh
Q 044977           71 FKKGGWSPEEDMLLCEAQKIFGNR-------WTEIAKVVSGRTDNAVKNRFSTLCKKRAKY  124 (479)
Q Consensus        71 IkKg~WT~EEDelLLelvkk~Gnr-------WskIAk~LPGRTdnqcKNRW~slLkKr~K~  124 (479)
                      .+...||.|+|.+|-+.+-.|+..       ...++..| +||..+|.-||+.++++++..
T Consensus         3 ~rqdawt~e~d~llae~vl~~i~eg~tql~afe~~g~~L-~rt~aac~fRwNs~vrk~Yee   62 (170)
T PRK13923          3 TRQDAWTQERDGLLAEVVLRHIREGGTQLKAFEEVGDAL-KRTAAACGFRWNSVVRKQYQE   62 (170)
T ss_pred             chhhhhhhHHHHHHHHHHHHHHhccchHHHHHHHHHHHH-hhhHHHHHhHHHHHHHHHHHH
Confidence            356789999999999999888742       66677778 899999999999999987643

>PF08914 Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR015010 Rap1 Myb adopts a canonical three-helix bundle tertiary structure, with the second and third helices forming a helix-turn-helix variant motif

Probab=95.42  E-value=0.02  Score=46.60  Aligned_cols=49  Identities=20%  Similarity=0.332  Sum_probs=32.4

Q ss_pred             CCCCCHHHHHHHHHHHHHhC--------Cc-hhhhchhcC-CCChhHHHHHHHHHhhhh
Q 044977           73 KGGWSPEEDMLLCEAQKIFG--------NR-WTEIAKVVS-GRTDNAVKNRFSTLCKKR  121 (479)
Q Consensus        73 Kg~WT~EEDelLLelvkk~G--------nr-WskIAk~LP-GRTdnqcKNRW~slLkKr  121 (479)
                      |.+||.+||..|+..+..+.        |+ |.+++..-+ .+|-.+.|+||...++.+
T Consensus         2 R~~fT~edD~~l~~~v~~~~~~~~~~~Gn~iwk~le~~~~t~HtwQSwR~Ry~K~L~~~   60 (65)
T PF08914_consen    2 RTPFTEEDDAALLDYVKENERQGGSVSGNKIWKELEEKHPTRHTWQSWRDRYLKHLRGR   60 (65)
T ss_dssp             -----HHHHHHHHHHHHHT--STTTTTSSHHHHHHHHS-SSS--SHHHHHHHHHHT---
T ss_pred             CCCCCHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcc
Confidence            45799999999999997652        22 999999887 999999999998777653

The function is unclear but it may either interact with DNA via an adaptor protein or it may be only involved in protein-protein interactions []. ; PDB: 1FEX_A.

>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional

Probab=95.19  E-value=0.086  Score=62.04  Aligned_cols=100  Identities=23%  Similarity=0.377  Sum_probs=78.3

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCChhhHhhhcCCCChhhhhh----hhhhc-------------------------------
Q 044977           22 VTWTQQEDDILREQISIHGTENWSIIASKFKDKTTRQCRR----RWYTY-------------------------------   66 (479)
Q Consensus        22 g~WT~EEDekL~elV~k~G~~nWs~IAk~lpgRT~kQCRe----RW~n~-------------------------------   66 (479)
                      ..||.-+=..++.+..+||..+...||..|.+++...++.    -|.+|                               
T Consensus       825 ~~w~~~~f~~f~~~~~~~gr~~~~~i~~~~~~k~~~ev~~y~~~f~~~~~~~~~~~~~~~~ie~~e~~~~~~~~~~~~~~  904 (1033)
T PLN03142        825 STWSRRDFNAFIRACEKYGRNDIKSIASEMEGKTEEEVERYAKVFWERYKELNDYDRIIKNIERGEARISRKDEIMKAIG  904 (1033)
T ss_pred             CcccHHHHHHHHHHHHHhCHhHHHHHHHHhcCCCHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3588888889999999999999999999999888766542    22211                               


Q ss_pred             --------------c-CCCCCCCCCCHHHHHHHHHHHHHhC-Cchhhhchh------------cCCCChhHHHHHHHHHh
Q 044977           67 --------------L-NSDFKKGGWSPEEDMLLCEAQKIFG-NRWTEIAKV------------VSGRTDNAVKNRFSTLC  118 (479)
Q Consensus        67 --------------L-~P~IkKg~WT~EEDelLLelvkk~G-nrWskIAk~------------LPGRTdnqcKNRW~slL  118 (479)
                                    + .+..++..||.+||..|+-++.+|| ++|.+|-..            +..||+..|..|..+++
T Consensus       905 ~k~~~~~~p~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~g~~~~~~~~~~i~~~~~f~fd~~~~srt~~~~~~r~~~l~  984 (1033)
T PLN03142        905 KKLDRYKNPWLELKIQYGQNKGKLYNEECDRFMLCMVHKLGYGNWDELKAAFRTSPLFRFDWFVKSRTPQELARRCDTLI  984 (1033)
T ss_pred             HHHHHccCcHHHceeecCCCCCCcCCHHHHHHHHHHHHHhccchHHHHHHHHHhCCceeeehhhccCCHHHHHHHHHHHH
Confidence                          1 1233455699999999999999999 789998442            35799999999999998


Q ss_pred             hhh
Q 044977          119 KKR  121 (479)
Q Consensus       119 kKr  121 (479)
                      +-.
T Consensus       985 ~~~  987 (1033)
T PLN03142        985 RLI  987 (1033)
T ss_pred             HHH
Confidence            753

>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain

Probab=94.96  E-value=0.067  Score=43.27  Aligned_cols=48  Identities=31%  Similarity=0.453  Sum_probs=40.2

Q ss_pred             CCCCCHHHHHHHHHHHHHhC----C-------------chhhhchhc-----CCCChhHHHHHHHHHhhh
Q 044977           73 KGGWSPEEDMLLCEAQKIFG----N-------------RWTEIAKVV-----SGRTDNAVKNRFSTLCKK  120 (479)
Q Consensus        73 Kg~WT~EEDelLLelvkk~G----n-------------rWskIAk~L-----PGRTdnqcKNRW~slLkK  120 (479)
                      +..||++|..+|++++.+|.    +             -|..|+..|     +.||..+||.+|.++...
T Consensus         2 ~~~fs~~E~~~Lv~~v~~~~~il~~k~~~~~~~~~k~~~W~~I~~~lN~~~~~~Rs~~~lkkkW~nlk~~   71 (78)
T PF13873_consen    2 KPNFSEEEKEILVELVEKHKDILENKFSDSVSNKEKRKAWEEIAEELNALGPGKRSWKQLKKKWKNLKSK   71 (78)
T ss_pred             CCCCCHHHHHHHHHHHHHhHHHHhcccccHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHH
Confidence            46799999999999998873    1             299999976     359999999999988764

>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]

Probab=94.79  E-value=0.022  Score=59.33  Aligned_cols=46  Identities=20%  Similarity=0.430  Sum_probs=43.7

Q ss_pred             CCCHHHHHHHHHHHHHhCCCChhhHhhhcCCCChhhhhhhhhhccC
Q 044977           23 TWTQQEDDILREQISIHGTENWSIIASKFKDKTTRQCRRRWYTYLN   68 (479)
Q Consensus        23 ~WT~EEDekL~elV~k~G~~nWs~IAk~lpgRT~kQCReRW~n~L~   68 (479)
                      .|+..|+.+|++...-.|.|||..||.+++.|+...|+.+|..++.
T Consensus        65 ~WgadEEllli~~~~TlGlGNW~dIadyiGsr~kee~k~HylK~y~  110 (432)
T COG5114          65 GWGADEELLLIECLDTLGLGNWEDIADYIGSRAKEEIKSHYLKMYD  110 (432)
T ss_pred             CcCchHHHHHHHHHHhcCCCcHHHHHHHHhhhhhHHHHHHHHHHHh
Confidence            6999999999999999999999999999999999999999987654

>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family

Probab=94.65  E-value=0.022  Score=53.99  Aligned_cols=48  Identities=27%  Similarity=0.623  Sum_probs=39.8

Q ss_pred             CCCCCCHHHHHHHHHHHHHh---CCC---ChhhHhhhcCCCChhhhhhhhhhccC
Q 044977           20 HIVTWTQQEDDILREQISIH---GTE---NWSIIASKFKDKTTRQCRRRWYTYLN   68 (479)
Q Consensus        20 krg~WT~EEDekL~elV~k~---G~~---nWs~IAk~lpgRT~kQCReRW~n~L~   68 (479)
                      +...||.|||.+|.+.|-+|   |..   ....|+..+. ||+..|.=||..+++
T Consensus         3 RQDAWT~eeDlLLAEtVLrhIReG~TQL~AFeEvg~~L~-RTsAACGFRWNs~VR   56 (161)
T TIGR02894         3 RQDAWTHEEDLLLAETVLRHIREGSTQLSAFEEVGRALN-RTAAACGFRWNAYVR   56 (161)
T ss_pred             cccccccHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHc-ccHHHhcchHHHHHH
Confidence            34579999999999999999   221   3777887776 999999999998886

In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.

>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]

Probab=94.27  E-value=0.042  Score=57.28  Aligned_cols=47  Identities=26%  Similarity=0.704  Sum_probs=42.5

Q ss_pred             CCCCCHHHHHHHHHHHHHhC-CchhhhchhcCCCChhHHHHHHHHHhh
Q 044977           73 KGGWSPEEDMLLCEAQKIFG-NRWTEIAKVVSGRTDNAVKNRFSTLCK  119 (479)
Q Consensus        73 Kg~WT~EEDelLLelvkk~G-nrWskIAk~LPGRTdnqcKNRW~slLk  119 (479)
                      -..|+..|+.+|++...-.| ++|..||.+++.|+..+||.||..+..
T Consensus        63 ~e~WgadEEllli~~~~TlGlGNW~dIadyiGsr~kee~k~HylK~y~  110 (432)
T COG5114          63 EEGWGADEELLLIECLDTLGLGNWEDIADYIGSRAKEEIKSHYLKMYD  110 (432)
T ss_pred             CCCcCchHHHHHHHHHHhcCCCcHHHHHHHHhhhhhHHHHHHHHHHHh
Confidence            34799999999999999999 899999999999999999999976543

>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain

Probab=94.10  E-value=0.041  Score=44.48  Aligned_cols=47  Identities=21%  Similarity=0.518  Sum_probs=38.7

Q ss_pred             CCCCCHHHHHHHHHHHHHhCC----------------CChhhHhhhcC-----CCChhhhhhhhhhcc
Q 044977           21 IVTWTQQEDDILREQISIHGT----------------ENWSIIASKFK-----DKTTRQCRRRWYTYL   67 (479)
Q Consensus        21 rg~WT~EEDekL~elV~k~G~----------------~nWs~IAk~lp-----gRT~kQCReRW~n~L   67 (479)
                      ...||.+|...|+++|..|..                .-|..|+..|.     .|+..+|+.+|.+..
T Consensus         2 ~~~fs~~E~~~Lv~~v~~~~~il~~k~~~~~~~~~k~~~W~~I~~~lN~~~~~~Rs~~~lkkkW~nlk   69 (78)
T PF13873_consen    2 KPNFSEEEKEILVELVEKHKDILENKFSDSVSNKEKRKAWEEIAEELNALGPGKRSWKQLKKKWKNLK   69 (78)
T ss_pred             CCCCCHHHHHHHHHHHHHhHHHHhcccccHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Confidence            457999999999999998821                13999999873     589999999998854

>PRK13923 putative spore coat protein regulator protein YlbO; Provisional

Probab=91.95  E-value=0.096  Score=50.13  Aligned_cols=48  Identities=27%  Similarity=0.537  Sum_probs=37.1

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCC------hhhHhhhcCCCChhhhhhhhhhccC
Q 044977           20 HIVTWTQQEDDILREQISIHGTEN------WSIIASKFKDKTTRQCRRRWYTYLN   68 (479)
Q Consensus        20 krg~WT~EEDekL~elV~k~G~~n------Ws~IAk~lpgRT~kQCReRW~n~L~   68 (479)
                      +...||.|||.+|.+.|-+|+..-      ...++..+. |+..+|..||..+++
T Consensus         4 rqdawt~e~d~llae~vl~~i~eg~tql~afe~~g~~L~-rt~aac~fRwNs~vr   57 (170)
T PRK13923          4 RQDAWTQERDGLLAEVVLRHIREGGTQLKAFEEVGDALK-RTAAACGFRWNSVVR   57 (170)
T ss_pred             hhhhhhhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHh-hhHHHHHhHHHHHHH
Confidence            345799999999999999986432      445555554 999999999977665

>KOG2656 consensus DNA methyltransferase 1-associated protein-1 [Chromatin structure and dynamics; Transcription]

Probab=91.14  E-value=0.29  Score=52.30  Aligned_cols=50  Identities=34%  Similarity=0.496  Sum_probs=45.0

Q ss_pred             CCCCHHHHHHHHHHHHHhCCchhhhchh-----cCC-CChhHHHHHHHHHhhhhhh
Q 044977           74 GGWSPEEDMLLCEAQKIFGNRWTEIAKV-----VSG-RTDNAVKNRFSTLCKKRAK  123 (479)
Q Consensus        74 g~WT~EEDelLLelvkk~GnrWskIAk~-----LPG-RTdnqcKNRW~slLkKr~K  123 (479)
                      ..||.+|-.-|.++++.|--||-.||..     ++. ||-.++|.||+.++++-.+
T Consensus       131 n~WskeETD~LF~lck~fDLRf~VIaDRyd~qq~~~sRTvEdLKeRyY~v~r~l~k  186 (445)
T KOG2656|consen  131 NSWSKEETDYLFDLCKRFDLRFFVIADRYDNQQYKKSRTVEDLKERYYSVCRKLLK  186 (445)
T ss_pred             ccccHHHHHHHHHHHHhcCeeEEEEeeccchhhccccccHHHHHHHHHHHHHHHHH
Confidence            4699999999999999999999999987     655 9999999999999887544

>PF09111 SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain adopts a secondary structure comprising a main core of three alpha-helices

Probab=90.14  E-value=0.49  Score=42.71  Aligned_cols=51  Identities=31%  Similarity=0.419  Sum_probs=40.7

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhCC----chhhhchh------------cCCCChhHHHHHHHHHhhh
Q 044977           70 DFKKGGWSPEEDMLLCEAQKIFGN----RWTEIAKV------------VSGRTDNAVKNRFSTLCKK  120 (479)
Q Consensus        70 ~IkKg~WT~EEDelLLelvkk~Gn----rWskIAk~------------LPGRTdnqcKNRW~slLkK  120 (479)
                      ..++..||++||.-|+-++.+||-    .|..|-..            +..||+.+|..|..++++-
T Consensus        46 ~~~~k~yseeEDRfLl~~~~~~G~~~~~~~e~Ik~~Ir~~p~FrFDwf~kSRt~~el~rR~~tLi~~  112 (118)
T PF09111_consen   46 NNKKKVYSEEEDRFLLCMLYKYGYDAEGNWEKIKQEIRESPLFRFDWFFKSRTPQELQRRCNTLIKL  112 (118)
T ss_dssp             TSS-SSS-HHHHHHHHHHHHHHTTTSTTHHHHHHHHHHH-CGGCT-HHHHTS-HHHHHHHHHHHHHH
T ss_pred             CCCCCCcCcHHHHHHHHHHHHhCCCCCchHHHHHHHHHhCCCcccchhcccCCHHHHHHHHHHHHHH
Confidence            556778999999999999999995    79888654            3569999999999999864

It has a role in DNA binding, contacting DNA target sites similar to c-Myb (IPR014778 from INTERPRO) repeats or homeodomains []. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006338 chromatin remodeling, 0005634 nucleus; PDB: 2NOG_A 2Y9Y_A 2Y9Z_A 1OFC_X.

>PF12776 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; InterPro: IPR024752 This domain, found in a range of uncharacterised proteins, may be related to Myb/SANT-like DNA binding domains

Probab=87.67  E-value=1.2  Score=36.77  Aligned_cols=46  Identities=35%  Similarity=0.609  Sum_probs=35.3

Q ss_pred             CCCHHHHHHHHHHHHHh---CC----------chhhhchhc---CC--CChhHHHHHHHHHhhh
Q 044977           75 GWSPEEDMLLCEAQKIF---GN----------RWTEIAKVV---SG--RTDNAVKNRFSTLCKK  120 (479)
Q Consensus        75 ~WT~EEDelLLelvkk~---Gn----------rWskIAk~L---PG--RTdnqcKNRW~slLkK  120 (479)
                      .||++++..|++++...   |+          .|..|+..|   +|  .|..+|++||..+.+.
T Consensus         1 ~Wt~~~~~~ll~~~~e~~~~g~~~~~~~fk~~~w~~i~~~~~~~~~~~~t~~qlknk~~~lk~~   64 (96)
T PF12776_consen    1 SWTPEMTRFLLDLLIEQINKGNRPTNGGFKKEGWNNIAEEFNEKTGLNYTKKQLKNKWKTLKKD   64 (96)
T ss_pred             CCChHHHHHHHHHHHHHHHhCCCCCCCCcCHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHH
Confidence            49999999999998653   32          299999877   23  4788999999876553

>KOG4282 consensus Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain [Transcription]

Probab=86.94  E-value=0.91  Score=46.55  Aligned_cols=47  Identities=30%  Similarity=0.478  Sum_probs=38.8

Q ss_pred             CCCCHHHHHHHHHHHHHhC----------Cchhhhchhc----CCCChhHHHHHHHHHhhh
Q 044977           74 GGWSPEEDMLLCEAQKIFG----------NRWTEIAKVV----SGRTDNAVKNRFSTLCKK  120 (479)
Q Consensus        74 g~WT~EEDelLLelvkk~G----------nrWskIAk~L----PGRTdnqcKNRW~slLkK  120 (479)
                      ..|+.+|-..||++..+.-          .-|..||..+    .-||+.+||++|.++.++
T Consensus        55 ~~Ws~~et~~Li~~~~~~~~~~~~~~~k~~~We~va~k~~~~g~~rs~~qck~K~~nl~k~  115 (345)
T KOG4282|consen   55 PRWSEEETLTLIEIRGEMDVALRRGKLKGPLWEEVARKMAELGYPRSPKQCKAKIENLKKK  115 (345)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHH
Confidence            6799999999999987542          3499999965    239999999999998764

>KOG1194 consensus Predicted DNA-binding protein, contains Myb-like, SANT and ELM2 domains [Transcription]

Probab=86.84  E-value=2  Score=47.00  Aligned_cols=49  Identities=20%  Similarity=0.419  Sum_probs=43.8

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCchhhhchhcCCCChhHHHHHHHHHhhhh
Q 044977           73 KGGWSPEEDMLLCEAQKIFGNRWTEIAKVVSGRTDNAVKNRFSTLCKKR  121 (479)
Q Consensus        73 Kg~WT~EEDelLLelvkk~GnrWskIAk~LPGRTdnqcKNRW~slLkKr  121 (479)
                      ...||.||-.++-.++..||.++.+|-+.||.|+-..+..+|....+.+
T Consensus       187 ~d~WT~Ed~vlFe~aF~~~GK~F~kIrq~LP~rsLaSlvqyYy~~KK~~  235 (534)
T KOG1194|consen  187 PDEWTAEDIVLFEQAFQFFGKDFHKIRQALPHRSLASLVQYYYSWKKTR  235 (534)
T ss_pred             cccchHHHHHHHHHHHHHhcccHHHHHHHccCccHHHHHHHHHHHHHHh
Confidence            4579999999999999999999999999999999999999887765543

>COG5118 BDP1 Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]

Probab=81.58  E-value=1.8  Score=46.39  Aligned_cols=46  Identities=24%  Similarity=0.377  Sum_probs=42.3

Q ss_pred             CCCCHHHHHHHHHHHHHhCCchhhhchhcCCCChhHHHHHHHHHhh
Q 044977           74 GGWSPEEDMLLCEAQKIFGNRWTEIAKVVSGRTDNAVKNRFSTLCK  119 (479)
Q Consensus        74 g~WT~EEDelLLelvkk~GnrWskIAk~LPGRTdnqcKNRW~slLk  119 (479)
                      .+||.+|-+++..+...+|..++.|+..||.|...|||..|.+--+
T Consensus       366 ~~Ws~~e~ekFYKALs~wGtdF~LIs~lfP~R~RkqIKaKfi~Eek  411 (507)
T COG5118         366 LRWSKKEIEKFYKALSIWGTDFSLISSLFPNRERKQIKAKFIKEEK  411 (507)
T ss_pred             CcccHHHHHHHHHHHHHhcchHHHHHHhcCchhHHHHHHHHHHHhh
Confidence            3699999999999999999999999999999999999999976443

>PF08281 Sigma70_r4_2: Sigma-70, region 4; InterPro: IPR013249 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription

Probab=80.55  E-value=2.7  Score=31.48  Aligned_cols=41  Identities=27%  Similarity=0.421  Sum_probs=31.1

Q ss_pred             HHHHHHHHHHHHHhCCchhhhchhcCCCChhHHHHHHHHHhh
Q 044977           78 PEEDMLLCEAQKIFGNRWTEIAKVVSGRTDNAVKNRFSTLCK  119 (479)
Q Consensus        78 ~EEDelLLelvkk~GnrWskIAk~LPGRTdnqcKNRW~slLk  119 (479)
                      ++++..++.++...|-.|.+||..+ |.|...|+.+....++
T Consensus        12 ~~~~r~i~~l~~~~g~s~~eIa~~l-~~s~~~v~~~l~ra~~   52 (54)
T PF08281_consen   12 PERQREIFLLRYFQGMSYAEIAEIL-GISESTVKRRLRRARK   52 (54)
T ss_dssp             -HHHHHHHHHHHTS---HHHHHHHC-TS-HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCcCHHHHHHHH-CcCHHHHHHHHHHHHh
Confidence            5677788888888999999999999 9999999998876554

Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 4 of sigma-70 like sigma-factors are involved in binding to the -35 promoter element via a helix-turn-helix motif [].; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 2LFW_A 1OR7_B 2H27_D 2O8X_B.

>KOG4282 consensus Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain [Transcription]

Probab=80.28  E-value=2  Score=44.15  Aligned_cols=46  Identities=20%  Similarity=0.352  Sum_probs=36.7

Q ss_pred             CCCCCHHHHHHHHHHHHHh----CCC-----ChhhHhhhcC----CCChhhhhhhhhhc
Q 044977           21 IVTWTQQEDDILREQISIH----GTE-----NWSIIASKFK----DKTTRQCRRRWYTY   66 (479)
Q Consensus        21 rg~WT~EEDekL~elV~k~----G~~-----nWs~IAk~lp----gRT~kQCReRW~n~   66 (479)
                      ...|+.+|-..|+++....    ..+     -|..||..+.    -|++.||+.+|.|.
T Consensus        54 ~~~Ws~~et~~Li~~~~~~~~~~~~~~~k~~~We~va~k~~~~g~~rs~~qck~K~~nl  112 (345)
T KOG4282|consen   54 EPRWSEEETLTLIEIRGEMDVALRRGKLKGPLWEEVARKMAELGYPRSPKQCKAKIENL  112 (345)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence            4789999999999987543    222     3999999654    48999999999873

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	479
1a5j_A	110	Chicken B-Myb Dna Binding Domain, Repeat 2 And Repe		2e-23
1h8a_C	128	Crystal Structure Of Ternary Protein-Dna Complex3 L		3e-21
1gv2_A	105	Crystal Structure Of C-Myb R2r3 Length = 105		6e-21
1h88_C	159	Crystal Structure Of Ternary Protein-Dna Complex1 L		7e-21
1mse_C	105	Solution Structure Of A Specific Dna Complex Of The		2e-20
3zqc_A	131	Structure Of The Trichomonas Vaginalis Myb3 Dna-Bin		1e-18
2k9n_A	107	Solution Nmr Structure Of The R2r3 Dna Binding Doma		2e-16
3osf_A	126	The Structure Of Protozoan Parasite Trichomonas Vag		5e-16
1idy_A	54	Structure Of Myb Transforming Protein, Nmr, Minimiz		2e-09
1mbj_A	53	Mouse C-Myb Dna-Binding Domain Repeat 3 Length = 53		5e-09
2dim_A	70	Solution Structure Of The Myb_dna-Binding Domain Of		3e-06
1mbg_A	53	Mouse C-Myb Dna-Binding Domain Repeat 2 Length = 53		1e-05
1gvd_A	52	Crystal Structure Of C-Myb R2 V103l Mutant Length =		2e-05
1gv5_A	52	Crystal Structure Of C-Myb R2 Length = 52		4e-05
2d9a_A	60	Solution Structure Of Rsgi Ruh-050, A Myb Dna-Bindi		1e-04
1mbe_A	53	Mouse C-Myb Dna-Binding Domain Repeat 1 Length = 53		3e-04
1guu_A	52	Crystal Structure Of C-Myb R1 Length = 52		3e-04

>pdb|1A5J|A Chain A, Chicken B-Myb Dna Binding Domain, Repeat 2 And Repeat3, Nmr, 32 Structures Length = 110

Iteration: 1
 Score =  107 bits (267), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 45/99 (45%), Positives = 69/99 (69%)
Query: 24  WTQQEDDILREQISIHGTENWSIIASKFKDKTTRQCRRRWYTYLNSDFKKGGWSPEEDML 83
           WT++ED  + E +  +GT+ W++IA   K +  +QCR RW+ +LN + KK  W+ EED +
Sbjct: 10  WTKEEDQKVIELVKKYGTKQWTLIAKHLKGRLGKQCRERWHNHLNPEVKKSSWTEEEDRI 69
Query: 84  LCEAQKIFGNRWTEIAKVVSGRTDNAVKNRFSTLCKKRA 122
           + EA K+ GNRW EIAK++ GRTDNAVKN +++  K++ 
Sbjct: 70  IFEAHKVLGNRWAEIAKLLPGRTDNAVKNHWNSTIKRKV 108

>pdb|1H8A|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex3 Length = 128

Iteration: 1
 Score = 99.4 bits (246), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 43/99 (43%), Positives = 66/99 (66%)
Query: 24  WTQQEDDILREQISIHGTENWSIIASKFKDKTTRQCRRRWYTYLNSDFKKGGWSPEEDML 83
           WT++ED  + E +  +G + WS IA   K +  +QCR RW+ +LN + KK  W+ EED +
Sbjct: 30  WTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRI 89
Query: 84  LCEAQKIFGNRWTEIAKVVSGRTDNAVKNRFSTLCKKRA 122
           + +A K  GNRW EIAK++ GRTDNAVKN +++  +++ 
Sbjct: 90  IYQAHKRLGNRWAEIAKLLPGRTDNAVKNHWNSTMRRKV 128

>pdb|1GV2|A Chain A, Crystal Structure Of C-Myb R2r3 Length = 105

Iteration: 1
 Score = 98.6 bits (244), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 41/99 (41%), Positives = 67/99 (67%)
Query: 24  WTQQEDDILREQISIHGTENWSIIASKFKDKTTRQCRRRWYTYLNSDFKKGGWSPEEDML 83
           WT++ED  + + +  +G + WS+IA   K +  +QCR RW+ +LN + KK  W+ EED +
Sbjct: 7   WTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRI 66
Query: 84  LCEAQKIFGNRWTEIAKVVSGRTDNAVKNRFSTLCKKRA 122
           + +A K  GNRW EIAK++ GRTDNA+KN +++  +++ 
Sbjct: 67  IYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 105

>pdb|1H88|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex1 Length = 159

Iteration: 1
 Score = 98.6 bits (244), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 41/99 (41%), Positives = 67/99 (67%)
Query: 24  WTQQEDDILREQISIHGTENWSIIASKFKDKTTRQCRRRWYTYLNSDFKKGGWSPEEDML 83
           WT++ED  + + +  +G + WS+IA   K +  +QCR RW+ +LN + KK  W+ EED +
Sbjct: 61  WTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRI 120
Query: 84  LCEAQKIFGNRWTEIAKVVSGRTDNAVKNRFSTLCKKRA 122
           + +A K  GNRW EIAK++ GRTDNA+KN +++  +++ 
Sbjct: 121 IYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 159

>pdb|1MSE|C Chain C, Solution Structure Of A Specific Dna Complex Of The Myb Dna- Binding Domain With Cooperative Recognition Helices Length = 105

Iteration: 1
 Score = 97.4 bits (241), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 41/98 (41%), Positives = 67/98 (68%)
Query: 24  WTQQEDDILREQISIHGTENWSIIASKFKDKTTRQCRRRWYTYLNSDFKKGGWSPEEDML 83
           WT++ED  + + +  +G + WS+IA   K +  +QCR RW+ +LN + KK  W+ EED +
Sbjct: 7   WTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRI 66
Query: 84  LCEAQKIFGNRWTEIAKVVSGRTDNAVKNRFSTLCKKR 121
           + +A K  GNRW EIAK++ GRTDNA+KN +++  +++
Sbjct: 67  IYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRK 104

>pdb|3ZQC|A Chain A, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding Domain Bound To A Promoter Sequence Reveals A Unique C- Terminal Beta-Hairpin Conformation Length = 131

Iteration: 1
 Score = 91.3 bits (225), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 41/106 (38%), Positives = 66/106 (62%)
Query: 25  TQQEDDILREQISIHGTENWSIIASKFKDKTTRQCRRRWYTYLNSDFKKGGWSPEEDMLL 84
           T+ EDD++RE +  +G +NW  I S   +++ +QCR RW+ +L+    K  W+PEED  +
Sbjct: 6   TEAEDDLIREYVKENGPQNWPRITSFLPNRSPKQCRERWFNHLDPAVVKHAWTPEEDETI 65
Query: 85  CEAQKIFGNRWTEIAKVVSGRTDNAVKNRFSTLCKKRAKYEALAKE 130
                  G++W+ IAK++ GRTDNA+KNR+++   KR    +  KE
Sbjct: 66  FRNYLKLGSKWSVIAKLIPGRTDNAIKNRWNSSISKRISTNSNHKE 111

>pdb|2K9N|A Chain A, Solution Nmr Structure Of The R2r3 Dna Binding Domain Of Myb1 Protein From Protozoan Parasite Trichomonas Vaginalis Length = 107

Iteration: 1
 Score = 83.6 bits (205), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 37/104 (35%), Positives = 64/104 (61%)
Query: 22  VTWTQQEDDILREQISIHGTENWSIIASKFKDKTTRQCRRRWYTYLNSDFKKGGWSPEED 81
           V +T++ED  L++ +  +G ++W  I+     +  RQCR RW  Y+N   +   WSPEED
Sbjct: 2   VKFTEEEDLKLQQLVMRYGAKDWIRISQLMITRNPRQCRERWNNYINPALRTDPWSPEED 61
Query: 82  MLLCEAQKIFGNRWTEIAKVVSGRTDNAVKNRFSTLCKKRAKYE 125
           MLL +    +G +W +I+K +  R+DN ++NR+  + + RAK++
Sbjct: 62  MLLDQKYAEYGPKWNKISKFLKNRSDNNIRNRWMMIARHRAKHQ 105

>pdb|3OSF|A Chain A, The Structure Of Protozoan Parasite Trichomonas Vaginalis Myb2 In Complex With Mre-2f-13 Dna Length = 126

Iteration: 1
 Score = 82.4 bits (202), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 41/113 (36%), Positives = 66/113 (58%), Gaps = 5/113 (4%)
Query: 8   IGSNEESKKKERHIVTWTQQEDDILREQISIHGTENWSIIASKFKDKTTRQCRRRWYTYL 67
           +  N ++ KK++     T +ED++L+  ++ HG++ W +IA+ F ++  RQCR RW  YL
Sbjct: 2   VQVNLKAAKKQKF----TPEEDEMLKRAVAQHGSD-WKMIAATFPNRNARQCRDRWKNYL 56
Query: 68  NSDFKKGGWSPEEDMLLCEAQKIFGNRWTEIAKVVSGRTDNAVKNRFSTLCKK 120
                   W+ EED LL +  + +G +W  IAK   GRTD  +KNR+ T+  K
Sbjct: 57  APSISHTPWTAEEDALLVQKIQEYGRQWAIIAKFFPGRTDIHIKNRWVTISNK 109

>pdb|1IDY|A Chain A, Structure Of Myb Transforming Protein, Nmr, Minimized Average Structure Length = 54

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 25/53 (47%), Positives = 38/53 (71%)
Query: 70  DFKKGGWSPEEDMLLCEAQKIFGNRWTEIAKVVSGRTDNAVKNRFSTLCKKRA 122
           + KK  W+ EED +L +A K  GNRW EIAK++ GRTDNA+KN +++  +++ 
Sbjct: 2   EVKKTSWTEEEDRILYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 54

>pdb|1MBJ|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 3 Length = 53

Iteration: 1
 Score = 58.9 bits (141), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 24/52 (46%), Positives = 37/52 (71%)
Query: 71  FKKGGWSPEEDMLLCEAQKIFGNRWTEIAKVVSGRTDNAVKNRFSTLCKKRA 122
            KK  W+ EED ++ +A K  GNRW EIAK++ GRTDNA+KN +++  +++ 
Sbjct: 1   VKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 52

>pdb|2DIM|A Chain A, Solution Structure Of The Myb_dna-Binding Domain Of Human Cell Division Cycle 5-Like Protein Length = 70

Iteration: 1
 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 31/55 (56%)
Query: 23 TWTQQEDDILREQISIHGTENWSIIASKFKDKTTRQCRRRWYTYLNSDFKKGGWS 77
           W   ED+IL+  +  +G   WS IAS    K+ +QC+ RWY +L+   KK  WS
Sbjct: 11 VWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKKTEWS 65

>pdb|1MBG|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 2 Length = 53

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/47 (38%), Positives = 30/47 (63%)
Query: 24 WTQQEDDILREQISIHGTENWSIIASKFKDKTTRQCRRRWYTYLNSD 70
          WT++ED  + E +  +G + WS+IA   K +  +QCR RW+ +LN +
Sbjct: 6  WTKEEDQRVIELVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPE 52

>pdb|1GVD|A Chain A, Crystal Structure Of C-Myb R2 V103l Mutant Length = 52

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 18/47 (38%), Positives = 30/47 (63%)
Query: 24 WTQQEDDILREQISIHGTENWSIIASKFKDKTTRQCRRRWYTYLNSD 70
          WT++ED  L + +  +G + WS+IA   K +  +QCR RW+ +LN +
Sbjct: 6  WTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPE 52

>pdb|1GV5|A Chain A, Crystal Structure Of C-Myb R2 Length = 52

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 30/47 (63%)
Query: 24 WTQQEDDILREQISIHGTENWSIIASKFKDKTTRQCRRRWYTYLNSD 70
          WT++ED  + + +  +G + WS+IA   K +  +QCR RW+ +LN +
Sbjct: 6  WTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPE 52

>pdb|2D9A|A Chain A, Solution Structure Of Rsgi Ruh-050, A Myb Dna-Binding Domain In Mouse Cdna Length = 60

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 18/47 (38%), Positives = 29/47 (61%)
Query: 22 VTWTQQEDDILREQISIHGTENWSIIASKFKDKTTRQCRRRWYTYLN 68
          V WT +ED+ LR  +   G ++W  +AS F ++T +QC+ RW   L+
Sbjct: 9  VKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRVLS 55

>pdb|1MBE|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 1 Length = 53

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 17/47 (36%), Positives = 32/47 (68%)
Query: 24 WTQQEDDILREQISIHGTENWSIIASKFKDKTTRQCRRRWYTYLNSD 70
          WT++ED+ L++ +  +GT++W +IA+   ++T  QC+ RW   LN +
Sbjct: 6  WTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNPE 52

>pdb|1GUU|A Chain A, Crystal Structure Of C-Myb R1 Length = 52

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 17/47 (36%), Positives = 32/47 (68%)
Query: 24 WTQQEDDILREQISIHGTENWSIIASKFKDKTTRQCRRRWYTYLNSD 70
          WT++ED+ L++ +  +GT++W +IA+   ++T  QC+ RW   LN +
Sbjct: 6  WTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNPE 52

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	479
2k9n_A	107	MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind	6e-47
3osg_A	126	MYB21; transcription-DNA complex, MYB2, R2R3 domai	3e-44
1h8a_C	128	AMV V-MYB, MYB transforming protein; transcription	6e-40
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	1e-39
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	4e-28
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	2e-06
3zqc_A	131	MYB3; transcription-DNA complex, DNA-binding prote	3e-38
3zqc_A	131	MYB3; transcription-DNA complex, DNA-binding prote	4e-04
1gv2_A	105	C-MYB, MYB proto-oncogene protein; transcription,	4e-38
1gv2_A	105	C-MYB, MYB proto-oncogene protein; transcription,	5e-05
2dim_A	70	Cell division cycle 5-like protein; MYB_DNA-bindin	2e-22
2dim_A	70	Cell division cycle 5-like protein; MYB_DNA-bindin	2e-08
2d9a_A	60	B-MYB, MYB-related protein B; DNA binding, structu	2e-17
2d9a_A	60	B-MYB, MYB-related protein B; DNA binding, structu	1e-07
1guu_A	52	C-MYB, MYB proto-oncogene protein; transcription,	9e-17
1guu_A	52	C-MYB, MYB proto-oncogene protein; transcription,	9e-08
1gvd_A	52	MYB proto-oncogene protein; transcription, transcr	5e-13
1gvd_A	52	MYB proto-oncogene protein; transcription, transcr	2e-06
1x41_A	60	Transcriptional adaptor 2-like, isoform B; transcr	3e-10
1x41_A	60	Transcriptional adaptor 2-like, isoform B; transcr	7e-07
2aje_A	105	Telomere repeat-binding protein; DNA-binding, Trp,	1e-08
1vf9_A	64	Telomeric repeat binding factor 2; MYB, helix-turn	1e-08
1vf9_A	64	Telomeric repeat binding factor 2; MYB, helix-turn	4e-05
1ity_A	69	TRF1; helix-turn-helix, telomeres, DNA binding, MY	2e-08
1ity_A	69	TRF1; helix-turn-helix, telomeres, DNA binding, MY	6e-06
2din_A	66	Cell division cycle 5-like protein; MYB_DNA-bindin	4e-08
2din_A	66	Cell division cycle 5-like protein; MYB_DNA-bindin	5e-08
2llk_A	73	Cyclin-D-binding MYB-like transcription factor 1;	5e-08
2yus_A	79	SWI/SNF-related matrix-associated actin- dependent	7e-08
2yus_A	79	SWI/SNF-related matrix-associated actin- dependent	2e-06
2elk_A	58	SPCC24B10.08C protein; hypothetical protein, struc	1e-07
2elk_A	58	SPCC24B10.08C protein; hypothetical protein, struc	4e-04
2roh_A	122	RTBP1, telomere binding protein-1; plant, nucleus,	1e-07
1w0t_A	53	Telomeric repeat binding factor 1; telomere, DNA-b	1e-07
1w0t_A	53	Telomeric repeat binding factor 1; telomere, DNA-b	3e-07
2ltp_A	89	Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s	1e-07
2ltp_A	89	Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s	3e-07
2juh_A	121	Telomere binding protein TBP1; helix, nucleus, nuc	3e-07
1w0u_A	55	Telomeric repeat binding factor 2; telomere, DNA-b	3e-07
1w0u_A	55	Telomeric repeat binding factor 2; telomere, DNA-b	1e-05
2cqr_A	73	RSGI RUH-043, DNAJ homolog subfamily C member 1; m	5e-07
2cqr_A	73	RSGI RUH-043, DNAJ homolog subfamily C member 1; m	1e-06
1ign_A	246	Protein (RAP1); RAP1,yeast,telomeres,homoeodomain,	6e-07
2cu7_A	72	KIAA1915 protein; nuclear protein, SANT domain, DN	2e-06
2cu7_A	72	KIAA1915 protein; nuclear protein, SANT domain, DN	3e-06
2eqr_A	61	N-COR1, N-COR, nuclear receptor corepressor 1; SAN	9e-06
2cjj_A	93	Radialis; plant development, DNA-binding protein,	1e-05
4a69_C	94	Nuclear receptor corepressor 2; transcription, hyd	2e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-05
2ckx_A	83	NGTRF1, telomere binding protein TBP1; nuclear pro	5e-05
4eef_G	74	F-HB80.4, designed hemagglutinin binding protein;	4e-04
2iw5_B	235	Protein corest, REST corepressor 1; oxidoreductase	9e-04

>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A Length = 107

 Score =  156 bits (398), Expect = 6e-47
 Identities = 36/102 (35%), Positives = 63/102 (61%)

Query: 24  WTQQEDDILREQISIHGTENWSIIASKFKDKTTRQCRRRWYTYLNSDFKKGGWSPEEDML 83
           +T++ED  L++ +  +G ++W  I+     +  RQCR RW  Y+N   +   WSPEEDML
Sbjct: 4   FTEEEDLKLQQLVMRYGAKDWIRISQLMITRNPRQCRERWNNYINPALRTDPWSPEEDML 63

Query: 84  LCEAQKIFGNRWTEIAKVVSGRTDNAVKNRFSTLCKKRAKYE 125
           L +    +G +W +I+K +  R+DN ++NR+  + + RAK++
Sbjct: 64  LDQKYAEYGPKWNKISKFLKNRSDNNIRNRWMMIARHRAKHQ 105

>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A Length = 126

 Score =  150 bits (381), Expect = 3e-44
 Identities = 41/115 (35%), Positives = 67/115 (58%), Gaps = 5/115 (4%)

Query: 11  NEESKKKERHIVTWTQQEDDILREQISIHGTENWSIIASKFKDKTTRQCRRRWYTYLNSD 70
           N ++ KK++    +T +ED++L+  ++ HG+ +W +IA+ F ++  RQCR RW  YL   
Sbjct: 5   NLKAAKKQK----FTPEEDEMLKRAVAQHGS-DWKMIAATFPNRNARQCRDRWKNYLAPS 59

Query: 71  FKKGGWSPEEDMLLCEAQKIFGNRWTEIAKVVSGRTDNAVKNRFSTLCKKRAKYE 125
                W+ EED LL +  + +G +W  IAK   GRTD  +KNR+ T+  K    +
Sbjct: 60  ISHTPWTAEEDALLVQKIQEYGRQWAIIAKFFPGRTDIHIKNRWVTISNKLGIPQ 114

>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3 Length = 128

 Score =  139 bits (352), Expect = 6e-40
 Identities = 43/98 (43%), Positives = 66/98 (67%)

Query: 24  WTQQEDDILREQISIHGTENWSIIASKFKDKTTRQCRRRWYTYLNSDFKKGGWSPEEDML 83
           WT++ED  + E +  +G + WS IA   K +  +QCR RW+ +LN + KK  W+ EED +
Sbjct: 30  WTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRI 89

Query: 84  LCEAQKIFGNRWTEIAKVVSGRTDNAVKNRFSTLCKKR 121
           + +A K  GNRW EIAK++ GRTDNAVKN +++  +++
Sbjct: 90  IYQAHKRLGNRWAEIAKLLPGRTDNAVKNHWNSTMRRK 127

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C Length = 159

 Score =  139 bits (352), Expect = 1e-39
 Identities = 41/98 (41%), Positives = 67/98 (68%)

Query: 24  WTQQEDDILREQISIHGTENWSIIASKFKDKTTRQCRRRWYTYLNSDFKKGGWSPEEDML 83
           WT++ED  + + +  +G + WS+IA   K +  +QCR RW+ +LN + KK  W+ EED +
Sbjct: 61  WTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRI 120

Query: 84  LCEAQKIFGNRWTEIAKVVSGRTDNAVKNRFSTLCKKR 121
           + +A K  GNRW EIAK++ GRTDNA+KN +++  +++
Sbjct: 121 IYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRK 158

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C Length = 159

 Score =  108 bits (272), Expect = 4e-28
 Identities = 32/92 (34%), Positives = 56/92 (60%), Gaps = 1/92 (1%)

Query: 24  WTQQEDDILREQISIHGTENWSIIASKFKDKTTRQCRRRWYTYLNSDFKKGGWSPEEDML 83
           WT++ED+ L++ +  +GT++W +IA+   ++T  QC+ RW   LN +  KG W+ EED  
Sbjct: 9   WTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNPELIKGPWTKEEDQR 68

Query: 84  LCEAQKIFG-NRWTEIAKVVSGRTDNAVKNRF 114
           + +  + +G  RW+ IAK + GR     + R+
Sbjct: 69  VIKLVQKYGPKRWSVIAKHLKGRIGKQCRERW 100

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C Length = 159

 Score = 46.5 bits (111), Expect = 2e-06
 Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 1/43 (2%)

Query: 72  KKGGWSPEEDMLLCEAQKIFGNR-WTEIAKVVSGRTDNAVKNR 113
            K  W+ EED  L +  +  G   W  IA  +  RTD   ++R
Sbjct: 5   GKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHR 47

>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis} Length = 131

 Score =  135 bits (341), Expect = 3e-38
 Identities = 42/118 (35%), Positives = 69/118 (58%)

Query: 24  WTQQEDDILREQISIHGTENWSIIASKFKDKTTRQCRRRWYTYLNSDFKKGGWSPEEDML 83
           +T+ EDD++RE +  +G +NW  I S   +++ +QCR RW+ +L+    K  W+PEED  
Sbjct: 5   FTEAEDDLIREYVKENGPQNWPRITSFLPNRSPKQCRERWFNHLDPAVVKHAWTPEEDET 64

Query: 84  LCEAQKIFGNRWTEIAKVVSGRTDNAVKNRFSTLCKKRAKYEALAKENNNAYINPNNK 141
           +       G++W+ IAK++ GRTDNA+KNR+++   KR    +  KE      +   K
Sbjct: 65  IFRNYLKLGSKWSVIAKLIPGRTDNAIKNRWNSSISKRISTNSNHKEILLPDRSKKRK 122

>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis} Length = 131

 Score = 39.6 bits (93), Expect = 4e-04
 Identities = 14/78 (17%), Positives = 29/78 (37%), Gaps = 7/78 (8%)

Query: 24  WTQQEDDILREQISIHGTEN-WSIIASKFKDKTTRQCRRRWYTYLNSDFKKGGWSPEEDM 82
           WT +ED+ +       G  + WS+IA     +T    + RW + ++          E   
Sbjct: 57  WTPEEDETIFRNYLKLG--SKWSVIAKLIPGRTDNAIKNRWNSSISKRISTNSNHKE--- 111

Query: 83  LLCEAQKIFGNRWTEIAK 100
            +    +    +  ++ K
Sbjct: 112 -ILLPDRSKKRKAADVPK 128

>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A Length = 105

 Score =  133 bits (337), Expect = 4e-38
 Identities = 41/98 (41%), Positives = 67/98 (68%)

Query: 24  WTQQEDDILREQISIHGTENWSIIASKFKDKTTRQCRRRWYTYLNSDFKKGGWSPEEDML 83
           WT++ED  + + +  +G + WS+IA   K +  +QCR RW+ +LN + KK  W+ EED +
Sbjct: 7   WTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRI 66

Query: 84  LCEAQKIFGNRWTEIAKVVSGRTDNAVKNRFSTLCKKR 121
           + +A K  GNRW EIAK++ GRTDNA+KN +++  +++
Sbjct: 67  IYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRK 104

>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A Length = 105

 Score = 41.4 bits (98), Expect = 5e-05
 Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 1/37 (2%)

Query: 70  DFKKGGWSPEEDMLLCEAQKIFGNR-WTEIAKVVSGR 105
           +  KG W+ EED  + +  + +G + W+ IAK + GR
Sbjct: 1   ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGR 37

>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 70

 Score = 89.6 bits (223), Expect = 2e-22
 Identities = 26/72 (36%), Positives = 36/72 (50%), Gaps = 4/72 (5%)

Query: 9  GSNEESKKKERHIVTWTQQEDDILREQISIHGTENWSIIASKFKDKTTRQCRRRWYTYLN 68
          GS+  S K       W   ED+IL+  +  +G   WS IAS    K+ +QC+ RWY +L+
Sbjct: 1  GSSGSSGKGGV----WRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLD 56

Query: 69 SDFKKGGWSPEE 80
             KK  WS   
Sbjct: 57 PSIKKTEWSGPS 68

>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 70

 Score = 50.4 bits (121), Expect = 2e-08
 Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 1/41 (2%)

Query: 68  NSDFKKGGWSPEEDMLLCEAQKIFG-NRWTEIAKVVSGRTD 107
            S  K G W   ED +L  A   +G N+W+ IA ++  ++ 
Sbjct: 4   GSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSA 44

>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus} Length = 60

 Score = 75.0 bits (185), Expect = 2e-17
 Identities = 21/60 (35%), Positives = 34/60 (56%), Gaps = 5/60 (8%)

Query: 9  GSNEESKKKERHIVTWTQQEDDILREQISIHGTENWSIIASKFKDKTTRQCRRRWYTYLN 68
          GS+  S K +     WT +ED+ LR  +   G ++W  +AS F ++T +QC+ RW   L+
Sbjct: 1  GSSGSSGKVK-----WTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRVLS 55

>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus} Length = 60

 Score = 47.6 bits (114), Expect = 1e-07
 Identities = 13/41 (31%), Positives = 18/41 (43%), Gaps = 1/41 (2%)

Query: 68  NSDFKKGGWSPEEDMLLCEAQKIFGNR-WTEIAKVVSGRTD 107
           +    K  W+ EED  L    + FG + W  +A     RTD
Sbjct: 3   SGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTD 43

>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A Length = 52

 Score = 73.0 bits (180), Expect = 9e-17
 Identities = 17/47 (36%), Positives = 32/47 (68%)

Query: 24 WTQQEDDILREQISIHGTENWSIIASKFKDKTTRQCRRRWYTYLNSD 70
          WT++ED+ L++ +  +GT++W +IA+   ++T  QC+ RW   LN +
Sbjct: 6  WTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNPE 52

>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A Length = 52

 Score = 47.6 bits (114), Expect = 9e-08
 Identities = 13/37 (35%), Positives = 18/37 (48%), Gaps = 1/37 (2%)

Query: 72  KKGGWSPEEDMLLCEAQKIFG-NRWTEIAKVVSGRTD 107
            K  W+ EED  L +  +  G + W  IA  +  RTD
Sbjct: 2   GKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTD 38

>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A Length = 52

 Score = 62.5 bits (153), Expect = 5e-13
 Identities = 18/47 (38%), Positives = 30/47 (63%)

Query: 24 WTQQEDDILREQISIHGTENWSIIASKFKDKTTRQCRRRWYTYLNSD 70
          WT++ED  L + +  +G + WS+IA   K +  +QCR RW+ +LN +
Sbjct: 6  WTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPE 52

>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A Length = 52

 Score = 43.7 bits (104), Expect = 2e-06
 Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 1/36 (2%)

Query: 72  KKGGWSPEEDMLLCEAQKIFG-NRWTEIAKVVSGRT 106
            KG W+ EED  L +  + +G  RW+ IAK + GR 
Sbjct: 2   IKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRI 37

>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Length = 60

 Score = 55.1 bits (133), Expect = 3e-10
 Identities = 14/47 (29%), Positives = 24/47 (51%)

Query: 23 TWTQQEDDILREQISIHGTENWSIIASKFKDKTTRQCRRRWYTYLNS 69
          +WT QE+  L E +   G  NW  +A++   KT  +C + +  Y + 
Sbjct: 10 SWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKYFSG 56

>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Length = 60

 Score = 45.4 bits (108), Expect = 7e-07
 Identities = 10/44 (22%), Positives = 19/44 (43%), Gaps = 1/44 (2%)

Query: 72  KKGGWSPEEDMLLCEAQKIFG-NRWTEIAKVVSGRTDNAVKNRF 114
               W+ +E+M L EA    G   W ++A  +  +T    +  +
Sbjct: 7   GDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHY 50

>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3 Length = 105

 Score = 52.0 bits (124), Expect = 1e-08
 Identities = 15/98 (15%), Positives = 35/98 (35%), Gaps = 10/98 (10%)

Query: 9  GSNEESKKKERHIVTWTQQEDDILREQISIHGTENWSII----ASKFKDKTTRQCRRRWY 64
          GS+     + R    ++  E + L + +   GT  W  +          +T    + +W 
Sbjct: 1  GSHMLEDPQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWK 60

Query: 65 TYL-----NSDFKKGGWSPEEDML-LCEAQKIFGNRWT 96
          T +     +   ++G   P+E +  +  A   +  +  
Sbjct: 61 TLVHTAKISPQQRRGEPVPQELLNRVLNAHGYWTQQQM 98

>1vf9_A Telomeric repeat binding factor 2; MYB, helix-turn-helix, telomere, DNA binding protein; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1xg1_A 1vfc_A Length = 64

 Score = 50.1 bits (120), Expect = 1e-08
 Identities = 13/54 (24%), Positives = 25/54 (46%), Gaps = 2/54 (3%)

Query: 12 EESKKKERHIVTWTQQEDDILREQISIHGTENWSIIAS--KFKDKTTRQCRRRW 63
          E+S         WT +E + ++  +  +G  NW+ I+    F ++T    + RW
Sbjct: 2  EDSTTNITKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRW 55

>1vf9_A Telomeric repeat binding factor 2; MYB, helix-turn-helix, telomere, DNA binding protein; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1xg1_A 1vfc_A Length = 64

 Score = 40.4 bits (95), Expect = 4e-05
 Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 3/51 (5%)

Query: 72  KKGGWSPEEDMLLCEAQKIFGN-RWTEIAKVV--SGRTDNAVKNRFSTLCK 119
           KK  W+ EE   +    + +G   W  I+K      RT   +K+R+ T+ +
Sbjct: 10  KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKR 60

>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A Length = 69

 Score = 49.8 bits (119), Expect = 2e-08
 Identities = 19/69 (27%), Positives = 28/69 (40%), Gaps = 4/69 (5%)

Query: 14 SKKKERHIVTWTQQEDDILREQISIHGTENWSIIAS--KFKDKTTRQCRRRWYTYLNSDF 71
           K + R    W  +ED  LR  +  +G  NWS I    KF ++T+   + RW T      
Sbjct: 3  EKHRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKL 62

Query: 72 KKGGWSPEE 80
                 E+
Sbjct: 63 IS--SDSED 69

>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A Length = 69

 Score = 42.9 bits (101), Expect = 6e-06
 Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 3/53 (5%)

Query: 72  KKGGWSPEEDMLLCEAQKIFGN-RWTEIAK--VVSGRTDNAVKNRFSTLCKKR 121
           K+  W  EED  L    + +G   W++I      + RT   +K+R+ T+ K +
Sbjct: 9   KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLK 61

>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 66

 Score = 49.0 bits (117), Expect = 4e-08
 Identities = 16/65 (24%), Positives = 28/65 (43%), Gaps = 6/65 (9%)

Query: 9  GSNEESKKKERHIVTWTQQEDDILREQISIHGTENWSIIASKFKDKTTRQCRRRWYTYLN 68
          GS+  S KK      W+++E++ L     +  T  W  IA     +T  QC   +   L+
Sbjct: 1  GSSGSSGKKTE----WSREEEEKLLHLAKLMPT-QWRTIAP-IIGRTAAQCLEHYEFLLD 54

Query: 69 SDFKK 73
             ++
Sbjct: 55 KAAQR 59

>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 66

 Score = 49.0 bits (117), Expect = 5e-08
 Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 1/55 (1%)

Query: 72  KKGGWSPEEDMLLCEAQKIFGNRWTEIAKVVSGRTDNAVKNRFSTLCKKRAKYEA 126
           KK  WS EE+  L    K+   +W  IA ++ GRT       +  L  K A+ ++
Sbjct: 8   KKTEWSREEEEKLLHLAKLMPTQWRTIAPII-GRTAAQCLEHYEFLLDKAAQRDS 61

>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens} Length = 73

 Score = 48.8 bits (116), Expect = 5e-08
 Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 1/57 (1%)

Query: 61  RRWYTYLNSDFKKGGWSPEEDMLLCEAQKIFGNRWTEIAKVVSGRTDNAVKNRFSTL 117
           R    +       G ++PEE   L E +   GN W  I   + GR+ ++VK+R   +
Sbjct: 11  RENLYFQGDRNHVGKYTPEEIEKLKELRIKHGNDWATIGAAL-GRSASSVKDRCRLM 66

>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens} Length = 79

 Score = 48.7 bits (116), Expect = 7e-08
 Identities = 12/46 (26%), Positives = 24/46 (52%)

Query: 72  KKGGWSPEEDMLLCEAQKIFGNRWTEIAKVVSGRTDNAVKNRFSTL 117
               W+ +E +LL EA +++ + W ++++ V  RT +     F  L
Sbjct: 17  AGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRL 62

>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens} Length = 79

 Score = 44.5 bits (105), Expect = 2e-06
 Identities = 13/69 (18%), Positives = 29/69 (42%), Gaps = 7/69 (10%)

Query: 9  GSNEESK-----KKERHIVTWTQQEDDILREQISIHGTENWSIIASKFKDKTTRQCRRRW 63
          GS+  S      K       WT+QE  +L E + ++  ++W+ ++     +T  +C   +
Sbjct: 1  GSSGSSGTLAKSKGASAGREWTEQETLLLLEALEMYK-DDWNKVSEHVGSRTQDECILHF 59

Query: 64 YT-YLNSDF 71
              +   +
Sbjct: 60 LRLPIEDPY 68

>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe} Length = 58

 Score = 47.8 bits (114), Expect = 1e-07
 Identities = 15/59 (25%), Positives = 23/59 (38%), Gaps = 5/59 (8%)

Query: 9  GSNEESKKKERHIVTWTQQEDDILREQISIHGTENWSIIASKF-KDKTTRQCRRRWYTY 66
          GS+  S   E     W   E+ +L +     G  NW+ IA      +T  +CR  +   
Sbjct: 1  GSSGSSGFDE----NWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKT 55

>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe} Length = 58

 Score = 37.4 bits (87), Expect = 4e-04
 Identities = 12/42 (28%), Positives = 22/42 (52%), Gaps = 2/42 (4%)

Query: 75  GWSPEEDMLLCEAQKIFG-NRWTEIAK-VVSGRTDNAVKNRF 114
            W  +E++LL +A +  G   W +IA  V + RT    ++ +
Sbjct: 11  NWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHY 52

>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa} Length = 122

 Score = 49.7 bits (118), Expect = 1e-07
 Identities = 18/104 (17%), Positives = 39/104 (37%), Gaps = 12/104 (11%)

Query: 3   VPKKKIGSNEESKKKERHIVTWTQQEDDILREQISIHGTENWSIIA----SKFKDKTTRQ 58
           VP  +    +  +++ R    +T  E ++L E +   GT  W  +          +T   
Sbjct: 15  VPLSRSKRPDFGQRRIRR--PFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVD 72

Query: 59  CRRRWYTYL-----NSDFKKGGWSPEEDML-LCEAQKIFGNRWT 96
            + +W T +         ++G   P+E +  +  AQ  +    +
Sbjct: 73  LKDKWKTLVHTASIAPQQRRGAPVPQELLDRVLAAQAYWSVDSS 116

>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A Length = 53

 Score = 47.3 bits (113), Expect = 1e-07
 Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 2/42 (4%)

Query: 24 WTQQEDDILREQISIHGTENWSIIAS--KFKDKTTRQCRRRW 63
          W  +ED  LR  +  +G  NWS I    KF ++T+   + RW
Sbjct: 5  WLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRW 46

>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A Length = 53

 Score = 46.5 bits (111), Expect = 3e-07
 Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 3/53 (5%)

Query: 72  KKGGWSPEEDMLLCEAQKIFGN-RWTEIAK--VVSGRTDNAVKNRFSTLCKKR 121
           K+  W  EED  L    + +G   W++I      + RT   +K+R+ T+ K +
Sbjct: 1   KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLK 53

>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens} Length = 89

 Score = 48.4 bits (115), Expect = 1e-07
 Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 1/57 (1%)

Query: 10 SNEESKKKERHIVTWTQQEDDILREQISIHGTENWSIIASKFKDKTTRQCRRRWYTY 66
           +  S ++  +   WT++E    ++ +  HG  NWS IA     KT  QC+  ++ Y
Sbjct: 5  HHHSSGRENLYFQGWTEEEMGTAKKGLLEHGR-NWSAIARMVGSKTVSQCKNFYFNY 60

>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens} Length = 89

 Score = 47.6 bits (113), Expect = 3e-07
 Identities = 15/69 (21%), Positives = 30/69 (43%), Gaps = 1/69 (1%)

Query: 62  RWYTYLNSDFKKGGWSPEEDMLLCEAQKIFGNRWTEIAKVVSGRTDNAVKNRFSTLCKKR 121
             ++    +    GW+ EE     +     G  W+ IA++V  +T +  KN +    KKR
Sbjct: 5   HHHSSGRENLYFQGWTEEEMGTAKKGLLEHGRNWSAIARMVGSKTVSQCKNFYFNY-KKR 63

Query: 122 AKYEALAKE 130
              + + ++
Sbjct: 64  QNLDEILQQ 72

>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa} Length = 121

 Score = 48.3 bits (114), Expect = 3e-07
 Identities = 16/102 (15%), Positives = 38/102 (37%), Gaps = 12/102 (11%)

Query: 5   KKKIGSNEESKKKERHIVTWTQQEDDILREQISIHGTENWSIIA----SKFKDKTTRQCR 60
            +K   +E S+++ R    ++  E + L E +   GT  W  +          +T    +
Sbjct: 3   NQKSKRSELSQRRIRR--PFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLK 60

Query: 61  RRWYTYL-----NSDFKKGGWSPEEDML-LCEAQKIFGNRWT 96
            +W T +         ++G   P++ +  +  A   +  +  
Sbjct: 61  DKWKTLVHTASIAPQQRRGEPVPQDLLDRVLAAHAYWSQQQG 102

>1w0u_A Telomeric repeat binding factor 2; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle, nuclear protein; 1.8A {Homo sapiens} SCOP: a.4.1.4 Length = 55

 Score = 46.2 bits (110), Expect = 3e-07
 Identities = 11/42 (26%), Positives = 22/42 (52%), Gaps = 2/42 (4%)

Query: 24 WTQQEDDILREQISIHGTENWSIIAS--KFKDKTTRQCRRRW 63
          WT +E + ++  +  +G  NW+ I+    F ++T    + RW
Sbjct: 5  WTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRW 46

>1w0u_A Telomeric repeat binding factor 2; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle, nuclear protein; 1.8A {Homo sapiens} SCOP: a.4.1.4 Length = 55

 Score = 41.9 bits (99), Expect = 1e-05
 Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 3/51 (5%)

Query: 72  KKGGWSPEEDMLLCEAQKIFGN-RWTEIAK--VVSGRTDNAVKNRFSTLCK 119
           KK  W+ EE   +    + +G   W  I+K      RT   +K+R+ T+ +
Sbjct: 1   KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKR 51

>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Length = 73

 Score = 46.0 bits (109), Expect = 5e-07
 Identities = 14/68 (20%), Positives = 24/68 (35%), Gaps = 4/68 (5%)

Query: 10 SNEESKKKERHIVTWTQQEDDILREQISIH---GTENWSIIASKFKDKTTRQCRRRWYTY 66
           +   ++       WTQ +  +L   +  +    ++ W  IA     K+   C  R Y  
Sbjct: 7  GSLRKERARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIAR-YKL 65

Query: 67 LNSDFKKG 74
          L S    G
Sbjct: 66 LVSGPSSG 73

>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Length = 73

 Score = 45.2 bits (107), Expect = 1e-06
 Identities = 10/52 (19%), Positives = 21/52 (40%), Gaps = 4/52 (7%)

Query: 72  KKGGWSPEEDMLLCEAQKIF----GNRWTEIAKVVSGRTDNAVKNRFSTLCK 119
            +  W+  +  LL  A + +     + W +IA+ V  ++      R+  L  
Sbjct: 17  AEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLLVS 68

>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A Length = 246

 Score = 49.6 bits (117), Expect = 6e-07
 Identities = 28/214 (13%), Positives = 59/214 (27%), Gaps = 21/214 (9%)

Query: 17  KERHIVTWTQQEDDILREQISIHGTE-----NWSIIASKFKDKTTRQCRRRWYTYLNSDF 71
              +  ++T +ED+ + + +  + T       +  I+    + T    R R+  YL+   
Sbjct: 4   PSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRL 63

Query: 72  KKGGWSPEEDMLLCEAQKIFGNRWTEIAKVVSGRTDNAVKNRFSTLCKKRAKYEALAKEN 131
           +      +   L+ +     GN         +     ++K +FS        Y       
Sbjct: 64  EYVYEVDKFGKLVRDDD---GNLIK------TKVLPPSIKRKFSA----DEDYTLAIAVK 110

Query: 132 NNAYINPNNKRILFQNGFGTDGTPENAAPVKKVRRAHIPDLTENCNFENRSHRQSGTAAN 191
              Y +             TD     A   + +            NF       + +   
Sbjct: 111 KQFYRDLFQIDPDTGRSLITDEDTPTAIARRNMTMDPNHVPGSEPNFAAYR---TQSRRG 167

Query: 192 QHLRSPFTVLPQNFPSITHLPAKYHDAKEVSNDG 225
              R  F    +   + T    +    K +   G
Sbjct: 168 PIAREFFKHFAEEHAAHTENAWRDRFRKFLLAYG 201

>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Length = 72

 Score = 44.8 bits (106), Expect = 2e-06
 Identities = 17/52 (32%), Positives = 25/52 (48%)

Query: 72  KKGGWSPEEDMLLCEAQKIFGNRWTEIAKVVSGRTDNAVKNRFSTLCKKRAK 123
               W+ EE  L  +    FG RWT+I+K++  RT   VK+      K + K
Sbjct: 8   YSVKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVK 59

>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Length = 72

 Score = 43.6 bits (103), Expect = 3e-06
 Identities = 14/66 (21%), Positives = 27/66 (40%), Gaps = 5/66 (7%)

Query: 9  GSNEESKKKERHIVTWTQQEDDILREQISIHGTENWSIIASKFKDKTTRQCRRRWYTYLN 68
          GS+  S    +    WT +E ++  + ++  G   W+ I+     +T  Q +     Y  
Sbjct: 1  GSSGSSGYSVK----WTIEEKELFEQGLAKFGR-RWTKISKLIGSRTVLQVKSYARQYFK 55

Query: 69 SDFKKG 74
          +  K G
Sbjct: 56 NKVKCG 61

>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 61

 Score = 42.4 bits (100), Expect = 9e-06
 Identities = 13/56 (23%), Positives = 25/56 (44%), Gaps = 1/56 (1%)

Query: 11 NEESKKKERHIVTWTQQEDDILREQISIHGTENWSIIASKFKDKTTRQCRRRWYTY 66
          +  S    + +  WT  E +I +++   H   N+ +IAS  + K+   C   +Y  
Sbjct: 2  SSGSSGDRQFMNVWTDHEKEIFKDKFIQHPK-NFGLIASYLERKSVPDCVLYYYLT 56

>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3 Length = 93

 Score = 42.9 bits (101), Expect = 1e-05
 Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 4/48 (8%)

Query: 76  WSPEEDMLLCEAQKIFG----NRWTEIAKVVSGRTDNAVKNRFSTLCK 119
           WS +E+     A  ++     +RW  +A+ V GRT   VK  +  L +
Sbjct: 11  WSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVE 58

>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A Length = 94

 Score = 42.2 bits (99), Expect = 2e-05
 Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 1/51 (1%)

Query: 16 KKERHIVTWTQQEDDILREQISIHGTENWSIIASKFKDKTTRQCRRRWYTY 66
          K  + +  W++QE +  RE+   H  +N+ +IAS  + KT  +C   +Y  
Sbjct: 38 KDRQVMNMWSEQEKETFREKFMQHP-KNFGLIASFLERKTVAECVLYYYLT 87

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.0 bits (108), Expect = 2e-05
 Identities = 47/320 (14%), Positives = 101/320 (31%), Gaps = 93/320 (29%)

Query: 24  WTQQEDDILREQISIHGTENWSIIASKFKDKTTRQCRRRWYTYLNSDFKKGGWSPEEDML 83
           +       L  ++        SIIA   +D         W  + + +  K          
Sbjct: 310 YLDCRPQDLPREVLTTNPRRLSIIAESIRDGLA-----TWDNWKHVNCDK---------- 354

Query: 84  LCEAQKIFGNRWTEIAKVVSGRTDNAVKNRFSTLCKKRAKYEALAKENNNAYINPNNKRI 143
           L    +                    +        +K   ++ L+    +A+I      +
Sbjct: 355 LTTIIESS------------------LNVLEPAEYRKM--FDRLSVFPPSAHIPTILLSL 394

Query: 144 LFQNGFGTDGTPE-------NAAPVKK---VRRAHIPDLTENCNFENRSHRQSGTAANQH 193
           ++ +   +D             + V+K        IP +      E +   ++  A ++ 
Sbjct: 395 IWFDVIKSD--VMVVVNKLHKYSLVEKQPKESTISIPSIY----LELKVKLENEYALHRS 448

Query: 194 LRSPFTVLPQNFPSITHLPAK----------YHDAKEVSNDGEPLL--QGFWNSQNNKTQ 241
           +   +  +P+ F S   +P            +H  K + +     L    F + +     
Sbjct: 449 IVDHYN-IPKTFDSDDLIPPYLDQYFYSHIGHH-LKNIEHPERMTLFRMVFLDFR----- 501

Query: 242 GTFLKKDDPKI----TALIQQAELLSSLAQ--------KVNTESTEQSLENAWKVLQDFL 289
             FL++   KI    TA      +L++L Q          N    E+ +      + DFL
Sbjct: 502 --FLEQ---KIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNA----ILDFL 552

Query: 290 NRSKENDILRCKISDIDLQL 309
            + +EN ++  K +D+ L++
Sbjct: 553 PKIEEN-LICSKYTDL-LRI 570

>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A Length = 83

 Score = 40.7 bits (95), Expect = 5e-05
 Identities = 12/81 (14%), Positives = 29/81 (35%), Gaps = 10/81 (12%)

Query: 24 WTQQEDDILREQISIHGTENWSIIA----SKFKDKTTRQCRRRWYTY-----LNSDFKKG 74
          ++  E + L E +   GT  W  +          +T    + +W T      +    ++G
Sbjct: 3  FSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRG 62

Query: 75 GWSPEEDML-LCEAQKIFGNR 94
             P++ +  +  A   +  +
Sbjct: 63 EPVPQDLLDRVLAAHAYWSQQ 83

>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene} Length = 74

 Score = 38.3 bits (89), Expect = 4e-04
 Identities = 12/46 (26%), Positives = 19/46 (41%), Gaps = 4/46 (8%)

Query: 76  WSPEEDMLLCEAQKIFG----NRWTEIAKVVSGRTDNAVKNRFSTL 117
           W   E++    A         +RW ++A+ V GRT   VK  +   
Sbjct: 23  WKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHYELE 68

>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B* Length = 235

 Score = 40.1 bits (92), Expect = 9e-04
 Identities = 14/55 (25%), Positives = 29/55 (52%), Gaps = 1/55 (1%)

Query: 76  WSPEEDMLLCEAQKIFGNRWTEIAKVVSGRTDNAVKNRFSTLCKKRAKYEALAKE 130
           W+ EE +L  +A + +G  +  I+ V+  ++   VKN F    ++R   + + +E
Sbjct: 136 WTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNY-RRRFNIDEVLQE 189

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	479
2k9n_A	107	MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind	100.0
1gv2_A	105	C-MYB, MYB proto-oncogene protein; transcription,	99.98
3zqc_A	131	MYB3; transcription-DNA complex, DNA-binding prote	99.98
3osg_A	126	MYB21; transcription-DNA complex, MYB2, R2R3 domai	99.97
1h8a_C	128	AMV V-MYB, MYB transforming protein; transcription	99.97
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	99.96
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	99.96
1h8a_C	128	AMV V-MYB, MYB transforming protein; transcription	99.87
2dim_A	70	Cell division cycle 5-like protein; MYB_DNA-bindin	99.81
2juh_A	121	Telomere binding protein TBP1; helix, nucleus, nuc	99.73
1ign_A	246	Protein (RAP1); RAP1,yeast,telomeres,homoeodomain,	99.72
2roh_A	122	RTBP1, telomere binding protein-1; plant, nucleus,	99.69
2llk_A	73	Cyclin-D-binding MYB-like transcription factor 1;	99.68
2dim_A	70	Cell division cycle 5-like protein; MYB_DNA-bindin	99.66
1ity_A	69	TRF1; helix-turn-helix, telomeres, DNA binding, MY	99.65
2din_A	66	Cell division cycle 5-like protein; MYB_DNA-bindin	99.64
2d9a_A	60	B-MYB, MYB-related protein B; DNA binding, structu	99.63
1gvd_A	52	MYB proto-oncogene protein; transcription, transcr	99.63
2cu7_A	72	KIAA1915 protein; nuclear protein, SANT domain, DN	99.61
1guu_A	52	C-MYB, MYB proto-oncogene protein; transcription,	99.61
2d9a_A	60	B-MYB, MYB-related protein B; DNA binding, structu	99.58
3sjm_A	64	Telomeric repeat-binding factor 2; human telomeric	99.56
1guu_A	52	C-MYB, MYB proto-oncogene protein; transcription,	99.56
1gvd_A	52	MYB proto-oncogene protein; transcription, transcr	99.53
1w0t_A	53	Telomeric repeat binding factor 1; telomere, DNA-b	99.52
1x41_A	60	Transcriptional adaptor 2-like, isoform B; transcr	99.51
1w0t_A	53	Telomeric repeat binding factor 1; telomere, DNA-b	99.51
1ity_A	69	TRF1; helix-turn-helix, telomeres, DNA binding, MY	99.5
1x41_A	60	Transcriptional adaptor 2-like, isoform B; transcr	99.5
3osg_A	126	MYB21; transcription-DNA complex, MYB2, R2R3 domai	99.49
1gv2_A	105	C-MYB, MYB proto-oncogene protein; transcription,	99.49
2yum_A	75	ZZZ3 protein, zinc finger ZZ-type-containing prote	99.47
2aje_A	105	Telomere repeat-binding protein; DNA-binding, Trp,	99.47
2elk_A	58	SPCC24B10.08C protein; hypothetical protein, struc	99.46
2yum_A	75	ZZZ3 protein, zinc finger ZZ-type-containing prote	99.45
2k9n_A	107	MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind	99.43
2din_A	66	Cell division cycle 5-like protein; MYB_DNA-bindin	99.43
2elk_A	58	SPCC24B10.08C protein; hypothetical protein, struc	99.42
2ltp_A	89	Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s	99.14
3sjm_A	64	Telomeric repeat-binding factor 2; human telomeric	99.42
3zqc_A	131	MYB3; transcription-DNA complex, DNA-binding prote	99.42
2ckx_A	83	NGTRF1, telomere binding protein TBP1; nuclear pro	99.39
2cu7_A	72	KIAA1915 protein; nuclear protein, SANT domain, DN	99.38
2cqr_A	73	RSGI RUH-043, DNAJ homolog subfamily C member 1; m	99.33
2yus_A	79	SWI/SNF-related matrix-associated actin- dependent	99.29
1ign_A	246	Protein (RAP1); RAP1,yeast,telomeres,homoeodomain,	99.27
2yus_A	79	SWI/SNF-related matrix-associated actin- dependent	99.25
2llk_A	73	Cyclin-D-binding MYB-like transcription factor 1;	99.22
2cqr_A	73	RSGI RUH-043, DNAJ homolog subfamily C member 1; m	99.19
2juh_A	121	Telomere binding protein TBP1; helix, nucleus, nuc	99.19
2ckx_A	83	NGTRF1, telomere binding protein TBP1; nuclear pro	99.16
2cjj_A	93	Radialis; plant development, DNA-binding protein,	99.12
2aje_A	105	Telomere repeat-binding protein; DNA-binding, Trp,	99.1
2roh_A	122	RTBP1, telomere binding protein-1; plant, nucleus,	99.1
1x58_A	62	Hypothetical protein 4930532D21RIK; MUS musculus a	99.09
2ltp_A	89	Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s	98.67
2cjj_A	93	Radialis; plant development, DNA-binding protein,	98.89
2eqr_A	61	N-COR1, N-COR, nuclear receptor corepressor 1; SAN	98.84
3hm5_A	93	DNA methyltransferase 1-associated protein 1; DNA	98.8
2eqr_A	61	N-COR1, N-COR, nuclear receptor corepressor 1; SAN	98.75
2cqq_A	72	RSGI RUH-037, DNAJ homolog subfamily C member 1; m	98.72
2iw5_B	235	Protein corest, REST corepressor 1; oxidoreductase	98.65
1x58_A	62	Hypothetical protein 4930532D21RIK; MUS musculus a	98.59
1wgx_A	73	KIAA1903 protein; MYB DNA-binding domain, human cD	98.37
2cqq_A	72	RSGI RUH-037, DNAJ homolog subfamily C member 1; m	98.36
2xag_B	482	REST corepressor 1; amine oxidase, chromatin regul	98.36
1fex_A	59	TRF2-interacting telomeric RAP1 protein; helix tur	98.34
2iw5_B	235	Protein corest, REST corepressor 1; oxidoreductase	98.22
1wgx_A	73	KIAA1903 protein; MYB DNA-binding domain, human cD	98.2
1fex_A	59	TRF2-interacting telomeric RAP1 protein; helix tur	98.08
1ofc_X	304	ISWI protein; nuclear protein, chromatin remodelin	98.07
4eef_G	74	F-HB80.4, designed hemagglutinin binding protein;	97.87
2yqk_A	63	Arginine-glutamic acid dipeptide repeats protein;	97.81
1ug2_A	95	2610100B20RIK gene product; hypothetical protein,	97.79
2lr8_A	70	CAsp8-associated protein 2; structural genomics, n	96.82
4eef_G	74	F-HB80.4, designed hemagglutinin binding protein;	97.62
4iej_A	93	DNA methyltransferase 1-associated protein 1; DNA	97.48
2yqk_A	63	Arginine-glutamic acid dipeptide repeats protein;	97.37
2crg_A	70	Metastasis associated protein MTA3; transcription	97.34
4a69_C	94	Nuclear receptor corepressor 2; transcription, hyd	97.27
2xag_B	482	REST corepressor 1; amine oxidase, chromatin regul	97.22
4b4c_A	211	Chromodomain-helicase-DNA-binding protein 1; chrom	97.22
2ebi_A	86	DNA binding protein GT-1; DNA-binding domain, phos	96.96
2y9y_A	374	Imitation switch protein 1 (DEL_ATPase); transcrip	96.93
4a69_C	94	Nuclear receptor corepressor 2; transcription, hyd	96.88
3hm5_A	93	DNA methyltransferase 1-associated protein 1; DNA	96.87
2crg_A	70	Metastasis associated protein MTA3; transcription	96.8
2ebi_A	86	DNA binding protein GT-1; DNA-binding domain, phos	96.77
1ug2_A	95	2610100B20RIK gene product; hypothetical protein,	96.13
2lr8_A	70	CAsp8-associated protein 2; structural genomics, n	93.79
4iej_A	93	DNA methyltransferase 1-associated protein 1; DNA	92.9
1irz_A	64	ARR10-B; helix-turn-helix, DNA binding protein; NM	92.66
1irz_A	64	ARR10-B; helix-turn-helix, DNA binding protein; NM	92.02
1ofc_X	304	ISWI protein; nuclear protein, chromatin remodelin	91.48
4b4c_A	211	Chromodomain-helicase-DNA-binding protein 1; chrom	88.88
2xb0_X	270	Chromo domain-containing protein 1; hydrolase, DNA	88.59

>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A

Probab=100.00  E-value=5e-33  Score=236.94  Aligned_cols=105  Identities=35%  Similarity=0.732  Sum_probs=100.9

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCChhhHhhhcCCCChhhhhhhhhhccCCCCCCCCCCHHHHHHHHHHHHHhCCchhhhch
Q 044977           21 IVTWTQQEDDILREQISIHGTENWSIIASKFKDKTTRQCRRRWYTYLNSDFKKGGWSPEEDMLLCEAQKIFGNRWTEIAK  100 (479)
Q Consensus        21 rg~WT~EEDekL~elV~k~G~~nWs~IAk~lpgRT~kQCReRW~n~L~P~IkKg~WT~EEDelLLelvkk~GnrWskIAk  100 (479)
                      +++||+|||++|+++|..||.++|..||..|++|+++|||+||.++|+|.+++++||+|||.+|+++|.+||++|+.||+
T Consensus         1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~p~i~~~~WT~eEd~~L~~~~~~~G~~W~~Ia~   80 (107)
T 2k9n_A            1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMITRNPRQCRERWNNYINPALRTDPWSPEEDMLLDQKYAEYGPKWNKISK   80 (107)
T ss_dssp             CCSSCHHHHHHHHHHHHHHCSSCHHHHHHHTTTSCHHHHHHHHHHHSSSCCTTCCCCHHHHHHHHHHHHHTCSCHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCCHHHHhhhcCCCCHHHHHHHHHHHHcccccccccCHHHHHHHHHHHHHhCcCHHHHHH
Confidence            57899999999999999999889999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCCCChhHHHHHHHHHhhhhhhhh
Q 044977          101 VVSGRTDNAVKNRFSTLCKKRAKYE  125 (479)
Q Consensus       101 ~LPGRTdnqcKNRW~slLkKr~K~~  125 (479)
                      +|||||+++||+||+.++++..++.
T Consensus        81 ~l~gRt~~~~k~rw~~l~r~~~~~~  105 (107)
T 2k9n_A           81 FLKNRSDNNIRNRWMMIARHRAKHQ  105 (107)
T ss_dssp             HHSSSCHHHHHHHHHHHHHHHHSST
T ss_pred             HCCCCCHHHHHHHHHHHHhhHHHhh
Confidence            9999999999999999998866543

>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A

Probab=99.98  E-value=1.2e-32  Score=232.62  Aligned_cols=103  Identities=40%  Similarity=0.786  Sum_probs=98.8

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCChhhHhhhcCCCChhhhhhhhhhccCCCCCCCCCCHHHHHHHHHHHHHhCCchhhh
Q 044977           19 RHIVTWTQQEDDILREQISIHGTENWSIIASKFKDKTTRQCRRRWYTYLNSDFKKGGWSPEEDMLLCEAQKIFGNRWTEI   98 (479)
Q Consensus        19 rkrg~WT~EEDekL~elV~k~G~~nWs~IAk~lpgRT~kQCReRW~n~L~P~IkKg~WT~EEDelLLelvkk~GnrWskI   98 (479)
                      .++++||+|||++|+++|..||.++|..||..|++|+++||++||.++|+|.+++++||+|||.+|++++.+||++|+.|
T Consensus         2 l~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~~I   81 (105)
T 1gv2_A            2 LIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAEI   81 (105)
T ss_dssp             CCCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTCCCCCCCCCCHHHHHHHHHHHHHHSSCHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhcCCCHHHHHHHHHhccCCcccccCCCHHHHHHHHHHHHHhCCCHHHH
Confidence            46889999999999999999998899999999999999999999999999999999999999999999999999999999


Q ss_pred             chhcCCCChhHHHHHHHHHhhhh
Q 044977           99 AKVVSGRTDNAVKNRFSTLCKKR  121 (479)
Q Consensus        99 Ak~LPGRTdnqcKNRW~slLkKr  121 (479)
                      |++|||||+++|++||+.+++++
T Consensus        82 a~~l~gRt~~~~k~rw~~~~~~~  104 (105)
T 1gv2_A           82 AKLLPGRTDNAIKNHWNSTMRRK  104 (105)
T ss_dssp             HTTCTTCCHHHHHHHHHHHTC--
T ss_pred             HHHcCCCCHHHHHHHHHHHHhcc
Confidence            99999999999999999998864

>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}

Probab=99.98  E-value=7.2e-33  Score=243.54  Aligned_cols=109  Identities=37%  Similarity=0.717  Sum_probs=104.2

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCChhhHhhhcCCCChhhhhhhhhhccCCCCCCCCCCHHHHHHHHHHHHHhCCchhhhch
Q 044977           21 IVTWTQQEDDILREQISIHGTENWSIIASKFKDKTTRQCRRRWYTYLNSDFKKGGWSPEEDMLLCEAQKIFGNRWTEIAK  100 (479)
Q Consensus        21 rg~WT~EEDekL~elV~k~G~~nWs~IAk~lpgRT~kQCReRW~n~L~P~IkKg~WT~EEDelLLelvkk~GnrWskIAk  100 (479)
                      +|+||+|||++|+++|..||.++|..||..|++|+++|||+||.++|+|.+++++||+|||.+|+++|.+||++|+.||+
T Consensus         2 Kg~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~~Ia~   81 (131)
T 3zqc_A            2 KGPFTEAEDDLIREYVKENGPQNWPRITSFLPNRSPKQCRERWFNHLDPAVVKHAWTPEEDETIFRNYLKLGSKWSVIAK   81 (131)
T ss_dssp             CSSCCHHHHHHHHHHHHHHCSCCGGGGTTSCTTSCHHHHHHHHHHHTSTTCCCSCCCHHHHHHHHHHHHHSCSCHHHHTT
T ss_pred             CCCCCHHHHHHHHHHHHHhCcCCHHHHHHHHCCCCHHHHHHHHhhccCccccCCCCCHHHHHHHHHHHHHHCcCHHHHHH
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCCCChhHHHHHHHHHhhhhhhhhhhhh
Q 044977          101 VVSGRTDNAVKNRFSTLCKKRAKYEALAK  129 (479)
Q Consensus       101 ~LPGRTdnqcKNRW~slLkKr~K~~~wtk  129 (479)
                      +|||||+++||+||+++++++....++.+
T Consensus        82 ~l~gRt~~~~k~rw~~~l~~~~~~~~~~~  110 (131)
T 3zqc_A           82 LIPGRTDNAIKNRWNSSISKRISTNSNHK  110 (131)
T ss_dssp             TSTTCCHHHHHHHHHHTTGGGCCCCTTSC
T ss_pred             HcCCCCHHHHHHHHHHHHHHHhhcCCCcc
Confidence            99999999999999999999877666543

>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A

Probab=99.97  E-value=6.8e-32  Score=236.23  Aligned_cols=105  Identities=37%  Similarity=0.767  Sum_probs=100.6

Q ss_pred             ccCCCCCCCCHHHHHHHHHHHHHhCCCChhhHhhhcCCCChhhhhhhhhhccCCCCCCCCCCHHHHHHHHHHHHHhCCch
Q 044977           16 KKERHIVTWTQQEDDILREQISIHGTENWSIIASKFKDKTTRQCRRRWYTYLNSDFKKGGWSPEEDMLLCEAQKIFGNRW   95 (479)
Q Consensus        16 Kkkrkrg~WT~EEDekL~elV~k~G~~nWs~IAk~lpgRT~kQCReRW~n~L~P~IkKg~WT~EEDelLLelvkk~GnrW   95 (479)
                      ++..++++||+|||++|+++|..||. +|..||..|++|+++|||+||.++|+|.+++++||+|||.+|+++|.+||++|
T Consensus         6 ~~~~kk~~WT~eED~~L~~~v~~~G~-~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~v~~~G~~W   84 (126)
T 3osg_A            6 LKAAKKQKFTPEEDEMLKRAVAQHGS-DWKMIAATFPNRNARQCRDRWKNYLAPSISHTPWTAEEDALLVQKIQEYGRQW   84 (126)
T ss_dssp             -CBCSSCCCCHHHHHHHHHHHHHHTT-CHHHHHHTCTTCCHHHHHHHHHHHTSTTSCCSCCCHHHHHHHHHHHHHHCSCH
T ss_pred             cCCCCCCCCCHHHHHHHHHHHHHhCC-CHHHHHHHcCCCCHHHHHHHHhhhcccccccccCCHHHHHHHHHHHHHHCcCH
Confidence            56678899999999999999999997 99999999999999999999999999999999999999999999999999999


Q ss_pred             hhhchhcCCCChhHHHHHHHHHhhhh
Q 044977           96 TEIAKVVSGRTDNAVKNRFSTLCKKR  121 (479)
Q Consensus        96 skIAk~LPGRTdnqcKNRW~slLkKr  121 (479)
                      +.||++|||||+++||+||+.++++.
T Consensus        85 ~~Ia~~l~gRt~~~~k~rw~~l~~k~  110 (126)
T 3osg_A           85 AIIAKFFPGRTDIHIKNRWVTISNKL  110 (126)
T ss_dssp             HHHHTTSTTCCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHcCCCCHHHHHHHHHHHHHhc
Confidence            99999999999999999999998763

>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3

Probab=99.97  E-value=2.1e-31  Score=232.83  Aligned_cols=105  Identities=42%  Similarity=0.787  Sum_probs=100.5

Q ss_pred             cCCCCCCCCHHHHHHHHHHHHHhCCCChhhHhhhcCCCChhhhhhhhhhccCCCCCCCCCCHHHHHHHHHHHHHhCCchh
Q 044977           17 KERHIVTWTQQEDDILREQISIHGTENWSIIASKFKDKTTRQCRRRWYTYLNSDFKKGGWSPEEDMLLCEAQKIFGNRWT   96 (479)
Q Consensus        17 kkrkrg~WT~EEDekL~elV~k~G~~nWs~IAk~lpgRT~kQCReRW~n~L~P~IkKg~WT~EEDelLLelvkk~GnrWs   96 (479)
                      +..++++||+|||++|+++|..||.++|..||..|++|+++||++||.++|+|.+++++||+|||.+|++++.+||++|+
T Consensus        23 p~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~~~~G~~W~  102 (128)
T 1h8a_C           23 PELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWA  102 (128)
T ss_dssp             TTCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSSSCCHHHHHHHHHHTTCSSSCCSCCCHHHHHHHHHHHHHHCSCHH
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhcCCcHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHCcCHH
Confidence            45678999999999999999999988999999999999999999999999999999999999999999999999999999


Q ss_pred             hhchhcCCCChhHHHHHHHHHhhhh
Q 044977           97 EIAKVVSGRTDNAVKNRFSTLCKKR  121 (479)
Q Consensus        97 kIAk~LPGRTdnqcKNRW~slLkKr  121 (479)
                      .||++|||||+++||+||+.+++++
T Consensus       103 ~Ia~~l~gRt~~~~k~r~~~~~~~~  127 (128)
T 1h8a_C          103 EIAKLLPGRTDNAVKNHWNSTMRRK  127 (128)
T ss_dssp             HHGGGSTTCCHHHHHHHHHTTTTC-
T ss_pred             HHHHHCCCCCHHHHHHHHHHHHhcc
Confidence            9999999999999999999998764

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C

Probab=99.96  E-value=2.9e-31  Score=239.25  Aligned_cols=121  Identities=28%  Similarity=0.604  Sum_probs=78.0

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCChhhHhhhcCCCChhhhhhhhhhccCCCCCCCCCCHHHHHHHHHHHHHhCC-chhh
Q 044977           19 RHIVTWTQQEDDILREQISIHGTENWSIIASKFKDKTTRQCRRRWYTYLNSDFKKGGWSPEEDMLLCEAQKIFGN-RWTE   97 (479)
Q Consensus        19 rkrg~WT~EEDekL~elV~k~G~~nWs~IAk~lpgRT~kQCReRW~n~L~P~IkKg~WT~EEDelLLelvkk~Gn-rWsk   97 (479)
                      .++++||+|||++|+++|..||.++|..||..|++|+++||++||.++|+|.+++++||+|||.+|+++|.+||. +|..
T Consensus         4 ~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~v~~~g~~~W~~   83 (159)
T 1h89_C            4 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNPELIKGPWTKEEDQRVIKLVQKYGPKRWSV   83 (159)
T ss_dssp             ---------------------------------------CHHHHHHTTTCTTCCCSCCCHHHHHHHHHHHHHHCSCCHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHHccCCCcCCCCCChHHHHHHHHHHHHhCcccHHH
Confidence            567899999999999999999998999999999999999999999999999999999999999999999999996 7999


Q ss_pred             hchhcCCCChhHHHHHHHHHhhhhhhhhhhhhhhcccccCCC
Q 044977           98 IAKVVSGRTDNAVKNRFSTLCKKRAKYEALAKENNNAYINPN  139 (479)
Q Consensus        98 IAk~LPGRTdnqcKNRW~slLkKr~K~~~wtkEEd~~lins~  139 (479)
                      ||.+|||||+++|++||++++++.++..+|+.+|+..++...
T Consensus        84 Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~  125 (159)
T 1h89_C           84 IAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAH  125 (159)
T ss_dssp             HHHTSTTCCHHHHHHHHHHTTCTTSCCSCCCHHHHHHHHHHH
T ss_pred             HHHHcCCCCHHHHHHHHHHHhCccccccCCChHHHHHHHHHH
Confidence            999999999999999999999999999999999998776544

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C

Probab=99.96  E-value=2.1e-29  Score=227.14  Aligned_cols=104  Identities=40%  Similarity=0.790  Sum_probs=99.8

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhCCCChhhHhhhcCCCChhhhhhhhhhccCCCCCCCCCCHHHHHHHHHHHHHhCCchhh
Q 044977           18 ERHIVTWTQQEDDILREQISIHGTENWSIIASKFKDKTTRQCRRRWYTYLNSDFKKGGWSPEEDMLLCEAQKIFGNRWTE   97 (479)
Q Consensus        18 krkrg~WT~EEDekL~elV~k~G~~nWs~IAk~lpgRT~kQCReRW~n~L~P~IkKg~WT~EEDelLLelvkk~GnrWsk   97 (479)
                      ..++++||+|||++|+++|..||..+|..||..|++|++.||+.||.++|+|.+++++||++||.+|++++.+||++|+.
T Consensus        55 ~~~~~~Wt~eEd~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~~~~g~~W~~  134 (159)
T 1h89_C           55 ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAE  134 (159)
T ss_dssp             TCCCSCCCHHHHHHHHHHHHHHCSCCHHHHHHTSTTCCHHHHHHHHHHTTCTTSCCSCCCHHHHHHHHHHHHHHCSCHHH
T ss_pred             CcCCCCCChHHHHHHHHHHHHhCcccHHHHHHHcCCCCHHHHHHHHHHHhCccccccCCChHHHHHHHHHHHHHCCCHHH
Confidence            45678999999999999999999889999999999999999999999999999999999999999999999999999999


Q ss_pred             hchhcCCCChhHHHHHHHHHhhhh
Q 044977           98 IAKVVSGRTDNAVKNRFSTLCKKR  121 (479)
Q Consensus        98 IAk~LPGRTdnqcKNRW~slLkKr  121 (479)
                      ||++|||||+++||+||+.+++++
T Consensus       135 Ia~~l~gRt~~~~knr~~~~~r~~  158 (159)
T 1h89_C          135 IAKLLPGRTDNAIKNHWNSTMRRK  158 (159)
T ss_dssp             HHTTSTTCCHHHHHHHHHTTTCC-
T ss_pred             HHHHCCCCCHHHHHHHHHHHHhcc
Confidence            999999999999999999998764

>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3

Probab=99.87  E-value=2.7e-23  Score=181.47  Aligned_cols=93  Identities=28%  Similarity=0.594  Sum_probs=68.1

Q ss_pred             HhhhcCCCChhhhhhhhhhccCCCCCCCCCCHHHHHHHHHHHHHhCC-chhhhchhcCCCChhHHHHHHHHHhhhhhhhh
Q 044977           47 IASKFKDKTTRQCRRRWYTYLNSDFKKGGWSPEEDMLLCEAQKIFGN-RWTEIAKVVSGRTDNAVKNRFSTLCKKRAKYE  125 (479)
Q Consensus        47 IAk~lpgRT~kQCReRW~n~L~P~IkKg~WT~EEDelLLelvkk~Gn-rWskIAk~LPGRTdnqcKNRW~slLkKr~K~~  125 (479)
                      ||+.|++|+++||+.||.++|+|.+++++||+|||++|+++|.+||. +|..||.+|||||+.||++||.+++++..+.+
T Consensus         1 Ia~~~~~Rt~~qC~~Rw~~~l~p~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~   80 (128)
T 1h8a_C            1 MEAVIKNRTDVQCQHRWQKVLNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHNHLNPEVKKT   80 (128)
T ss_dssp             ---------------------CTTCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSSSCCHHHHHHHHHHTTCSSSCCS
T ss_pred             CccccCCCCHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhcCCcHHHHHHHHHHhcccccccc
Confidence            78999999999999999999999999999999999999999999996 69999999999999999999999999999999


Q ss_pred             hhhhhhcccccCCC
Q 044977          126 ALAKENNNAYINPN  139 (479)
Q Consensus       126 ~wtkEEd~~lins~  139 (479)
                      +|+.+|+..++...
T Consensus        81 ~WT~eEd~~L~~~~   94 (128)
T 1h8a_C           81 SWTEEEDRIIYQAH   94 (128)
T ss_dssp             CCCHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHH
Confidence            99999998776544

>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.81  E-value=1.6e-20  Score=149.26  Aligned_cols=66  Identities=33%  Similarity=0.699  Sum_probs=63.0

Q ss_pred             ccCCCCCCCCHHHHHHHHHHHHHhCCCChhhHhhhcCCCChhhhhhhhhhccCCCCCCCCCCHHHH
Q 044977           16 KKERHIVTWTQQEDDILREQISIHGTENWSIIASKFKDKTTRQCRRRWYTYLNSDFKKGGWSPEED   81 (479)
Q Consensus        16 Kkkrkrg~WT~EEDekL~elV~k~G~~nWs~IAk~lpgRT~kQCReRW~n~L~P~IkKg~WT~EED   81 (479)
                      ....++++||+|||++|+++|..||.++|..||..|++|+++|||+||.++|+|.+++++||+|||
T Consensus         4 ~~~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~~Rt~~qcr~Rw~~~L~p~i~~~~wt~eEd   69 (70)
T 2dim_A            4 GSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKKTEWSGPSS   69 (70)
T ss_dssp             CSCSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHSTTCCHHHHHHHHHHTSCSSSCCCCSCCSCC
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhcCCCHHHHHHHHHHHcCCcccCCCCChHhc
Confidence            355678899999999999999999988999999999999999999999999999999999999998

>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}

Probab=99.73  E-value=3.2e-18  Score=151.25  Aligned_cols=89  Identities=15%  Similarity=0.227  Sum_probs=81.6

Q ss_pred             CCcccccccCCCCCCCCHHHHHHHHHHHHHhCCCChhhHhhhc----CCCChhhhhhhhhhccC-----CCCCCC-CCCH
Q 044977            9 GSNEESKKKERHIVTWTQQEDDILREQISIHGTENWSIIASKF----KDKTTRQCRRRWYTYLN-----SDFKKG-GWSP   78 (479)
Q Consensus         9 ~~~~~skKkkrkrg~WT~EEDekL~elV~k~G~~nWs~IAk~l----pgRT~kQCReRW~n~L~-----P~IkKg-~WT~   78 (479)
                      .+.....+.++++++||+|||+.|+++|.+||.++|+.|++.+    ++||+.+|++||.++++     |.++++ +|++
T Consensus         5 k~~~~~~~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~~~~~p~~krg~~~p~   84 (121)
T 2juh_A            5 KSKRSELSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQ   84 (121)
T ss_dssp             CCCCCCCCCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHHHHTCSTTCCCSCCCH
T ss_pred             cCCCccccCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhhhccCCcccCCCCCCH
Confidence            3444556678889999999999999999999999999999984    89999999999999998     999999 9999


Q ss_pred             HHHHHHHHHHHHhCCchhh
Q 044977           79 EEDMLLCEAQKIFGNRWTE   97 (479)
Q Consensus        79 EEDelLLelvkk~GnrWsk   97 (479)
                      +|+.+|++++..|||+|++
T Consensus        85 e~~~rv~~~h~~~gn~~~~  103 (121)
T 2juh_A           85 DLLDRVLAAHAYWSQQQGK  103 (121)
T ss_dssp             HHHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHHccchhc
Confidence            9999999999999999987

>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A

Probab=99.72  E-value=7e-18  Score=163.63  Aligned_cols=105  Identities=23%  Similarity=0.364  Sum_probs=91.9

Q ss_pred             cCCCCCCCCHHHHHHHHHHHHHhCCCC-----hhhHhhhcCCCChhhhhhhhhhccCCCCC-------------------
Q 044977           17 KERHIVTWTQQEDDILREQISIHGTEN-----WSIIASKFKDKTTRQCRRRWYTYLNSDFK-------------------   72 (479)
Q Consensus        17 kkrkrg~WT~EEDekL~elV~k~G~~n-----Ws~IAk~lpgRT~kQCReRW~n~L~P~Ik-------------------   72 (479)
                      +...+++||+|||++|+++|.++|..+     |..||+.|+|||+.|||.||.++|++.+.                   
T Consensus         4 ~~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpGRT~nsIRnRw~~~L~~~ln~vy~~ded~~Li~d~~Gn~   83 (246)
T 1ign_A            4 PSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLEYVYEVDKFGKLVRDDDGNL   83 (246)
T ss_dssp             ----CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGGGCCCEECBCTTSCBCBCTTSCB
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCCCCHHHHHHHHHHHHhhhcccccccCcchhhhhccCCCc
Confidence            445677999999999999999998643     99999999999999999999999999986                   


Q ss_pred             ----------CCCCCHHHHHHHHHHHHH-h--------------------------------CC----------------
Q 044977           73 ----------KGGWSPEEDMLLCEAQKI-F--------------------------------GN----------------   93 (479)
Q Consensus        73 ----------Kg~WT~EEDelLLelvkk-~--------------------------------Gn----------------   93 (479)
                                +..||.+||-.|+..+.+ |                                |.                
T Consensus        84 ikis~lp~siK~rftaeeDy~L~~~i~~~f~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~  163 (246)
T 1ign_A           84 IKTKVLPPSIKRKFSADEDYTLAIAVKKQFYRDLFQIDPDTGRSLITDEDTPTAIARRNMTMDPNHVPGSEPNFAAYRTQ  163 (246)
T ss_dssp             CEESSCCCCSCCCCCHHHHHHHHHHHHHHHHHHHHCBCSSSCCBCC-------------------------------CCC
T ss_pred             eeeeccCccccCccchhccHHHHHHHHHHHhhhhhhcCccccccccccccchhhhhhhhcccCccccccCCcchhhhccc
Confidence                      789999999999999877 2                                11                


Q ss_pred             ---------chhhhchhcCCCChhHHHHHHHHHhhhh
Q 044977           94 ---------RWTEIAKVVSGRTDNAVKNRFSTLCKKR  121 (479)
Q Consensus        94 ---------rWskIAk~LPGRTdnqcKNRW~slLkKr  121 (479)
                               .|..||+.+|+||.+++|+||+.+++..
T Consensus       164 ~~~gp~~~~~fk~ia~~~P~HT~~SWRdRyrKfl~~~  200 (246)
T 1ign_A          164 SRRGPIAREFFKHFAEEHAAHTENAWRDRFRKFLLAY  200 (246)
T ss_dssp             CCCCCCCTTHHHHHHHHTTTSCHHHHHHHHHHTHHHH
T ss_pred             cccCcchHHHHHHHHHHCCCCChhhHHHHHHHHHhhc
Confidence                     6999999999999999999999988764

>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}

Probab=99.69  E-value=3.5e-17  Score=144.81  Aligned_cols=81  Identities=20%  Similarity=0.266  Sum_probs=75.1

Q ss_pred             cccCCCCCCCCHHHHHHHHHHHHHhCCCChhhHhhhc----CCCChhhhhhhhhhcc-----CCCCCCCCCCHHH-HHHH
Q 044977           15 KKKERHIVTWTQQEDDILREQISIHGTENWSIIASKF----KDKTTRQCRRRWYTYL-----NSDFKKGGWSPEE-DMLL   84 (479)
Q Consensus        15 kKkkrkrg~WT~EEDekL~elV~k~G~~nWs~IAk~l----pgRT~kQCReRW~n~L-----~P~IkKg~WT~EE-DelL   84 (479)
                      .+.++++++||+|||+.|+++|++||.++|..|++.+    ++||+.+|++||.|++     +|.++++.|+++| +.+|
T Consensus        25 ~~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~~~~p~~kr~~~~p~e~~~~v  104 (122)
T 2roh_A           25 FGQRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTASIAPQQRRGAPVPQELLDRV  104 (122)
T ss_dssp             CCCCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHHHSCTTTCCCSSCCHHHHHHH
T ss_pred             cCCCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCCccccCCCCCCHHHHHHH
Confidence            4566788899999999999999999999999999974    7999999999999999     8999999999999 8999


Q ss_pred             HHHHHHhCCch
Q 044977           85 CEAQKIFGNRW   95 (479)
Q Consensus        85 Lelvkk~GnrW   95 (479)
                      +++|..|||+=
T Consensus       105 ~~~h~~~g~~~  115 (122)
T 2roh_A          105 LAAQAYWSVDS  115 (122)
T ss_dssp             HHHHHHHHSSC
T ss_pred             HHHHHHHhhHH
Confidence            99999999863

>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}

Probab=99.68  E-value=1.5e-17  Score=135.22  Aligned_cols=60  Identities=27%  Similarity=0.415  Sum_probs=47.9

Q ss_pred             hhhhhhhccCCCCCCCCCCHHHHHHHHHHHHHhCCchhhhchhcCCCChhHHHHHHHHHhh
Q 044977           59 CRRRWYTYLNSDFKKGGWSPEEDMLLCEAQKIFGNRWTEIAKVVSGRTDNAVKNRFSTLCK  119 (479)
Q Consensus        59 CReRW~n~L~P~IkKg~WT~EEDelLLelvkk~GnrWskIAk~LPGRTdnqcKNRW~slLk  119 (479)
                      ..-||.++|+|++++++||+|||++|++++.+||++|++||+.| |||+++||+||+.+.+
T Consensus         9 ~~~~~~~~ldP~i~k~~wT~EED~~L~~l~~~~G~kW~~IA~~l-gRt~~q~knRw~~L~~   68 (73)
T 2llk_A            9 SGRENLYFQGDRNHVGKYTPEEIEKLKELRIKHGNDWATIGAAL-GRSASSVKDRCRLMKD   68 (73)
T ss_dssp             ----------CCCCCCSSCHHHHHHHHHHHHHHSSCHHHHHHHH-TSCHHHHHHHHHHCSC
T ss_pred             cCcceeeecCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHh-CCCHHHHHHHHHHHHH
Confidence            45689999999999999999999999999999999999999999 9999999999986543

>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.66  E-value=3.7e-17  Score=129.87  Aligned_cols=65  Identities=25%  Similarity=0.401  Sum_probs=62.2

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhC-CchhhhchhcCCCChhHHHHHHHHHhhhhhhhhhhhhhhc
Q 044977           68 NSDFKKGGWSPEEDMLLCEAQKIFG-NRWTEIAKVVSGRTDNAVKNRFSTLCKKRAKYEALAKENN  132 (479)
Q Consensus        68 ~P~IkKg~WT~EEDelLLelvkk~G-nrWskIAk~LPGRTdnqcKNRW~slLkKr~K~~~wtkEEd  132 (479)
                      .|.+++++||+|||.+|+++|.+|| ++|..||.+|+|||+.|||+||+++|++.+++++|+.+|+
T Consensus         4 ~~~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~~Rt~~qcr~Rw~~~L~p~i~~~~wt~eEd   69 (70)
T 2dim_A            4 GSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKKTEWSGPSS   69 (70)
T ss_dssp             CSCSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHSTTCCHHHHHHHHHHTSCSSSCCCCSCCSCC
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhcCCCHHHHHHHHHHHcCCcccCCCCChHhc
Confidence            5788999999999999999999999 8999999999999999999999999999999999998876

>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A

Probab=99.65  E-value=1.1e-16  Score=126.96  Aligned_cols=64  Identities=27%  Similarity=0.455  Sum_probs=59.0

Q ss_pred             ccccCCCCCCCCHHHHHHHHHHHHHhCCCChhhHhhhcC--CCChhhhhhhhhhccCCCCCCCCCC
Q 044977           14 SKKKERHIVTWTQQEDDILREQISIHGTENWSIIASKFK--DKTTRQCRRRWYTYLNSDFKKGGWS   77 (479)
Q Consensus        14 skKkkrkrg~WT~EEDekL~elV~k~G~~nWs~IAk~lp--gRT~kQCReRW~n~L~P~IkKg~WT   77 (479)
                      .+++++++++||+|||++|+++|..||.++|..||..|+  +|++.||++||.++|+|.+.++..+
T Consensus         3 ~~~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p~i~k~~~~   68 (69)
T 1ity_A            3 EKHRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLISSDSE   68 (69)
T ss_dssp             CTTCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHHTSCCCCCCC
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcCCCCCCCCCC
Confidence            345667889999999999999999999889999999999  9999999999999999999988764

>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.64  E-value=1.3e-16  Score=125.36  Aligned_cols=60  Identities=30%  Similarity=0.418  Sum_probs=56.4

Q ss_pred             hccCCCCCCCCCCHHHHHHHHHHHHHhCCchhhhchhcCCCChhHHHHHHHHHhhhhhhhh
Q 044977           65 TYLNSDFKKGGWSPEEDMLLCEAQKIFGNRWTEIAKVVSGRTDNAVKNRFSTLCKKRAKYE  125 (479)
Q Consensus        65 n~L~P~IkKg~WT~EEDelLLelvkk~GnrWskIAk~LPGRTdnqcKNRW~slLkKr~K~~  125 (479)
                      .||+|.+++++||+|||.+|++++..||++|.+||. ++|||++|||+||++++++.++.+
T Consensus         1 g~L~P~~~k~~WT~eED~~L~~~~~~~g~~W~~Ia~-~~gRt~~qcr~Rw~~~l~~~~~~~   60 (66)
T 2din_A            1 GSSGSSGKKTEWSREEEEKLLHLAKLMPTQWRTIAP-IIGRTAAQCLEHYEFLLDKAAQRD   60 (66)
T ss_dssp             CCCSSSSSCCCCCHHHHHHHHHHHHHCTTCHHHHHH-HHSSCHHHHHHHHHHHHHHHHHSS
T ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHHHcCCCHHHHhc-ccCcCHHHHHHHHHHHhChHhcCC
Confidence            379999999999999999999999999999999999 889999999999999999877654

>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}

Probab=99.63  E-value=3.6e-16  Score=120.61  Aligned_cols=56  Identities=32%  Similarity=0.703  Sum_probs=52.7

Q ss_pred             cCCCCCCCCHHHHHHHHHHHHHhCCCChhhHhhhcCCCChhhhhhhhhhccCCCCC
Q 044977           17 KERHIVTWTQQEDDILREQISIHGTENWSIIASKFKDKTTRQCRRRWYTYLNSDFK   72 (479)
Q Consensus        17 kkrkrg~WT~EEDekL~elV~k~G~~nWs~IAk~lpgRT~kQCReRW~n~L~P~Ik   72 (479)
                      +..++++||+|||++|+++|..||..+|..||..|++|++.||++||.++|+|.++
T Consensus         4 p~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~i~   59 (60)
T 2d9a_A            4 GSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRVLSGPSS   59 (60)
T ss_dssp             CCCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCSSSCHHHHHHHHHHTSCSSSC
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHccCCCHHHHHHHHHHHcCCccC
Confidence            45678899999999999999999988999999999999999999999999999875

>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A

Probab=99.63  E-value=3.2e-16  Score=117.71  Aligned_cols=51  Identities=35%  Similarity=0.709  Sum_probs=49.0

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCChhhHhhhcCCCChhhhhhhhhhccCCC
Q 044977           20 HIVTWTQQEDDILREQISIHGTENWSIIASKFKDKTTRQCRRRWYTYLNSD   70 (479)
Q Consensus        20 krg~WT~EEDekL~elV~k~G~~nWs~IAk~lpgRT~kQCReRW~n~L~P~   70 (479)
                      ++++||+|||++|+++|..||.++|..||..|++|+++|||+||.++|+|+
T Consensus         2 ~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P~   52 (52)
T 1gvd_A            2 IKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPE   52 (52)
T ss_dssp             CCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTSCC
T ss_pred             CCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcCCCCHHHHHHHHHHHcCcC
Confidence            578999999999999999999889999999999999999999999999985

>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=99.61  E-value=4.8e-16  Score=124.39  Aligned_cols=58  Identities=31%  Similarity=0.420  Sum_probs=55.0

Q ss_pred             cCCCCCCCCCCHHHHHHHHHHHHHhCCchhhhchhcCCCChhHHHHHHHHHhhhhhhh
Q 044977           67 LNSDFKKGGWSPEEDMLLCEAQKIFGNRWTEIAKVVSGRTDNAVKNRFSTLCKKRAKY  124 (479)
Q Consensus        67 L~P~IkKg~WT~EEDelLLelvkk~GnrWskIAk~LPGRTdnqcKNRW~slLkKr~K~  124 (479)
                      .+|.+++++||+|||++|+++|.+||++|..||.+|||||++|||+||+.++++..+.
T Consensus         3 ~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~Ia~~~~~Rt~~q~k~r~~~~l~~~~~~   60 (72)
T 2cu7_A            3 SGSSGYSVKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVKC   60 (72)
T ss_dssp             CCCSSCCCCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHHHHHHSCS
T ss_pred             CCCCcCCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHHHHhc
Confidence            5789999999999999999999999999999999999999999999999999987654

>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A

Probab=99.61  E-value=4.5e-16  Score=116.71  Aligned_cols=51  Identities=33%  Similarity=0.789  Sum_probs=48.4

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCChhhHhhhcCCCChhhhhhhhhhccCCC
Q 044977           20 HIVTWTQQEDDILREQISIHGTENWSIIASKFKDKTTRQCRRRWYTYLNSD   70 (479)
Q Consensus        20 krg~WT~EEDekL~elV~k~G~~nWs~IAk~lpgRT~kQCReRW~n~L~P~   70 (479)
                      ++++||+|||++|+++|..||.++|..||+.|++|++.||+.||.++|+|+
T Consensus         2 ~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P~   52 (52)
T 1guu_A            2 GKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNPE   52 (52)
T ss_dssp             -CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHHSCC
T ss_pred             CCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHHHcCcC
Confidence            578999999999999999999889999999999999999999999999985

>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}

Probab=99.58  E-value=8.6e-16  Score=118.48  Aligned_cols=55  Identities=25%  Similarity=0.402  Sum_probs=51.8

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhC-CchhhhchhcCCCChhHHHHHHHHHhhhhh
Q 044977           68 NSDFKKGGWSPEEDMLLCEAQKIFG-NRWTEIAKVVSGRTDNAVKNRFSTLCKKRA  122 (479)
Q Consensus        68 ~P~IkKg~WT~EEDelLLelvkk~G-nrWskIAk~LPGRTdnqcKNRW~slLkKr~  122 (479)
                      +|.+++++||+|||++|+++|.+|| ++|..||.+|+|||+.|||+||++++++.+
T Consensus         3 ~p~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~i   58 (60)
T 2d9a_A            3 SGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRVLSGPS   58 (60)
T ss_dssp             SCCCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCSSSCHHHHHHHHHHTSCSSS
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHccCCCHHHHHHHHHHHcCCcc
Confidence            5789999999999999999999999 699999999999999999999999998754

>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A

Probab=99.56  E-value=2.1e-15  Score=119.23  Aligned_cols=54  Identities=20%  Similarity=0.495  Sum_probs=49.3

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCChhhHhhhcC--CCChhhhhhhhhhccCCCCC
Q 044977           19 RHIVTWTQQEDDILREQISIHGTENWSIIASKFK--DKTTRQCRRRWYTYLNSDFK   72 (479)
Q Consensus        19 rkrg~WT~EEDekL~elV~k~G~~nWs~IAk~lp--gRT~kQCReRW~n~L~P~Ik   72 (479)
                      .++++||+|||++|+++|.+||.++|..||+.++  +|++.|||+||.|+++|.++
T Consensus         9 ~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~glN   64 (64)
T 3sjm_A            9 TKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGMN   64 (64)
T ss_dssp             -CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTTCC
T ss_pred             CCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhccCCC
Confidence            4567899999999999999999999999999976  99999999999999998764

>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A

Probab=99.56  E-value=3.1e-15  Score=112.18  Aligned_cols=50  Identities=28%  Similarity=0.466  Sum_probs=46.4

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCC-chhhhchhcCCCChhHHHHHHHHHhhh
Q 044977           71 FKKGGWSPEEDMLLCEAQKIFGN-RWTEIAKVVSGRTDNAVKNRFSTLCKK  120 (479)
Q Consensus        71 IkKg~WT~EEDelLLelvkk~Gn-rWskIAk~LPGRTdnqcKNRW~slLkK  120 (479)
                      +++++||+|||.+|+++|.+||+ +|..||.+|||||+.||++||++++++
T Consensus         1 i~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P   51 (52)
T 1guu_A            1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNP   51 (52)
T ss_dssp             --CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHHSC
T ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHHHcCc
Confidence            46899999999999999999998 999999999999999999999999875

>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A

Probab=99.53  E-value=5.8e-15  Score=110.83  Aligned_cols=50  Identities=32%  Similarity=0.613  Sum_probs=47.1

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCC-chhhhchhcCCCChhHHHHHHHHHhhh
Q 044977           71 FKKGGWSPEEDMLLCEAQKIFGN-RWTEIAKVVSGRTDNAVKNRFSTLCKK  120 (479)
Q Consensus        71 IkKg~WT~EEDelLLelvkk~Gn-rWskIAk~LPGRTdnqcKNRW~slLkK  120 (479)
                      +++++||+|||.+|+++|.+||. +|..||.+|+|||+.|||+||.++|++
T Consensus         1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P   51 (52)
T 1gvd_A            1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNP   51 (52)
T ss_dssp             CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTSC
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcCCCCHHHHHHHHHHHcCc
Confidence            47899999999999999999997 699999999999999999999998865

>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A

Probab=99.52  E-value=9.1e-15  Score=110.49  Aligned_cols=49  Identities=31%  Similarity=0.545  Sum_probs=46.7

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCChhhHhhhcC--CCChhhhhhhhhhccC
Q 044977           20 HIVTWTQQEDDILREQISIHGTENWSIIASKFK--DKTTRQCRRRWYTYLN   68 (479)
Q Consensus        20 krg~WT~EEDekL~elV~k~G~~nWs~IAk~lp--gRT~kQCReRW~n~L~   68 (479)
                      ++++||+|||++|+++|..||.++|..||..|+  +|++.||++||.++++
T Consensus         1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k   51 (53)
T 1w0t_A            1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK   51 (53)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHT
T ss_pred             CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHHc
Confidence            468999999999999999999889999999999  9999999999999875

>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1

Probab=99.51  E-value=1.4e-14  Score=112.29  Aligned_cols=53  Identities=26%  Similarity=0.505  Sum_probs=49.9

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhCCCChhhHhhhcCCCChhhhhhhhhhccCCC
Q 044977           18 ERHIVTWTQQEDDILREQISIHGTENWSIIASKFKDKTTRQCRRRWYTYLNSD   70 (479)
Q Consensus        18 krkrg~WT~EEDekL~elV~k~G~~nWs~IAk~lpgRT~kQCReRW~n~L~P~   70 (479)
                      ...+++||+|||++|+++|..||.++|..||++|++|+++|||+||.++|.+.
T Consensus         5 ~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~r~~~~l~~~   57 (60)
T 1x41_A            5 SSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKYFSGP   57 (60)
T ss_dssp             CCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHHTTCS
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhCCCCHHHHHHHHHHHccCC
Confidence            46778999999999999999999889999999999999999999999999875

>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A

Probab=99.51  E-value=1.5e-14  Score=109.28  Aligned_cols=49  Identities=31%  Similarity=0.495  Sum_probs=46.5

Q ss_pred             CCCCCCHHHHHHHHHHHHHhC-CchhhhchhcC--CCChhHHHHHHHHHhhh
Q 044977           72 KKGGWSPEEDMLLCEAQKIFG-NRWTEIAKVVS--GRTDNAVKNRFSTLCKK  120 (479)
Q Consensus        72 kKg~WT~EEDelLLelvkk~G-nrWskIAk~LP--GRTdnqcKNRW~slLkK  120 (479)
                      ++++||+|||++|+++|.+|| ++|+.||..|+  |||+.||++||+++++.
T Consensus         1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k~   52 (53)
T 1w0t_A            1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKL   52 (53)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHTC
T ss_pred             CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHHcc
Confidence            478999999999999999999 79999999999  99999999999999874

>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A

Probab=99.50  E-value=1.5e-14  Score=114.62  Aligned_cols=58  Identities=26%  Similarity=0.374  Sum_probs=53.3

Q ss_pred             ccCCCCCCCCCCHHHHHHHHHHHHHhC-CchhhhchhcC--CCChhHHHHHHHHHhhhhhh
Q 044977           66 YLNSDFKKGGWSPEEDMLLCEAQKIFG-NRWTEIAKVVS--GRTDNAVKNRFSTLCKKRAK  123 (479)
Q Consensus        66 ~L~P~IkKg~WT~EEDelLLelvkk~G-nrWskIAk~LP--GRTdnqcKNRW~slLkKr~K  123 (479)
                      ...|..++++||+|||.+|+++|.+|| ++|+.||.+|+  |||+.|||+||++++++.+.
T Consensus         3 ~~~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p~i~   63 (69)
T 1ity_A            3 EKHRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLI   63 (69)
T ss_dssp             CTTCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHHTSCC
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcCCCCC
Confidence            456778899999999999999999999 79999999999  99999999999999998654

>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1

Probab=99.50  E-value=1.8e-14  Score=111.69  Aligned_cols=53  Identities=19%  Similarity=0.417  Sum_probs=49.5

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhC-CchhhhchhcCCCChhHHHHHHHHHhhh
Q 044977           68 NSDFKKGGWSPEEDMLLCEAQKIFG-NRWTEIAKVVSGRTDNAVKNRFSTLCKK  120 (479)
Q Consensus        68 ~P~IkKg~WT~EEDelLLelvkk~G-nrWskIAk~LPGRTdnqcKNRW~slLkK  120 (479)
                      .+.+.+++||+|||.+|+++|.+|| ++|.+||++|||||+.|||+||.+++..
T Consensus         3 s~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~r~~~~l~~   56 (60)
T 1x41_A            3 SGSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKYFSG   56 (60)
T ss_dssp             CCCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHHTTC
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhCCCCHHHHHHHHHHHccC
Confidence            4678899999999999999999999 8999999999999999999999988754

>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A

Probab=99.49  E-value=9.8e-15  Score=127.57  Aligned_cols=72  Identities=21%  Similarity=0.322  Sum_probs=67.0

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCchhhhchhcCCCChhHHHHHHHHHhhhhhhhhhhhhhhcccccCCC
Q 044977           68 NSDFKKGGWSPEEDMLLCEAQKIFGNRWTEIAKVVSGRTDNAVKNRFSTLCKKRAKYEALAKENNNAYINPN  139 (479)
Q Consensus        68 ~P~IkKg~WT~EEDelLLelvkk~GnrWskIAk~LPGRTdnqcKNRW~slLkKr~K~~~wtkEEd~~lins~  139 (479)
                      .+..++++||+|||++|+++|.+||.+|..||..|||||+.||+.||++++.+..++++|+.+|+..++...
T Consensus         6 ~~~~kk~~WT~eED~~L~~~v~~~G~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~v   77 (126)
T 3osg_A            6 LKAAKKQKFTPEEDEMLKRAVAQHGSDWKMIAATFPNRNARQCRDRWKNYLAPSISHTPWTAEEDALLVQKI   77 (126)
T ss_dssp             -CBCSSCCCCHHHHHHHHHHHHHHTTCHHHHHHTCTTCCHHHHHHHHHHHTSTTSCCSCCCHHHHHHHHHHH
T ss_pred             cCCCCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHhhhcccccccccCCHHHHHHHHHHH
Confidence            456789999999999999999999999999999999999999999999999999999999999998877654

>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A

Probab=99.49  E-value=7.3e-15  Score=123.79  Aligned_cols=70  Identities=24%  Similarity=0.492  Sum_probs=65.0

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhCC-chhhhchhcCCCChhHHHHHHHHHhhhhhhhhhhhhhhcccccCCC
Q 044977           70 DFKKGGWSPEEDMLLCEAQKIFGN-RWTEIAKVVSGRTDNAVKNRFSTLCKKRAKYEALAKENNNAYINPN  139 (479)
Q Consensus        70 ~IkKg~WT~EEDelLLelvkk~Gn-rWskIAk~LPGRTdnqcKNRW~slLkKr~K~~~wtkEEd~~lins~  139 (479)
                      ++++++||+|||.+|+++|.+||. +|..||.+|||||+.||+.||.+++.+..+.++|+.+|+..++...
T Consensus         1 ~l~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~   71 (105)
T 1gv2_A            1 ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAH   71 (105)
T ss_dssp             CCCCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTCCCCCCCCCCHHHHHHHHHHH
T ss_pred             CCCCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhcCCCHHHHHHHHHhccCCcccccCCCHHHHHHHHHHH
Confidence            468999999999999999999996 7999999999999999999999999999999999999998777544

>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.47  E-value=2.5e-14  Score=114.76  Aligned_cols=56  Identities=23%  Similarity=0.324  Sum_probs=51.9

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhC------CchhhhchhcCCCChhHHHHHHHHHhhhhhh
Q 044977           68 NSDFKKGGWSPEEDMLLCEAQKIFG------NRWTEIAKVVSGRTDNAVKNRFSTLCKKRAK  123 (479)
Q Consensus        68 ~P~IkKg~WT~EEDelLLelvkk~G------nrWskIAk~LPGRTdnqcKNRW~slLkKr~K  123 (479)
                      +|.+.+++||+|||++|++++.+||      ++|.+||.+|+|||+.||++||++++.+..+
T Consensus         3 ~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~Rt~~qcr~r~~~~l~~~~k   64 (75)
T 2yum_A            3 SGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQKYFIKLTK   64 (75)
T ss_dssp             CCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSSSCHHHHHHHHHHHHGGGST
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCCCCHHHHHHHHHHHHHHHHh
Confidence            5788999999999999999999999      7999999999999999999999988877543

>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3

Probab=99.47  E-value=5.7e-14  Score=121.41  Aligned_cols=83  Identities=16%  Similarity=0.254  Sum_probs=71.6

Q ss_pred             ccccccCCCCCCCCHHHHHHHHHHHHHhCCCChhhHhhhc----CCCChhhhhhhhhhcc-----CCCCCCCCCCHHHHH
Q 044977           12 EESKKKERHIVTWTQQEDDILREQISIHGTENWSIIASKF----KDKTTRQCRRRWYTYL-----NSDFKKGGWSPEEDM   82 (479)
Q Consensus        12 ~~skKkkrkrg~WT~EEDekL~elV~k~G~~nWs~IAk~l----pgRT~kQCReRW~n~L-----~P~IkKg~WT~EEDe   82 (479)
                      ....++++++++||+|||+.|+++|.+||.++|..|++.+    ++||..+|++||.+++     +|.+++|.-+|+|-.
T Consensus         4 ~~~~~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~~~~p~~~rg~~~P~~~l   83 (105)
T 2aje_A            4 MLEDPQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTAKISPQQRRGEPVPQELL   83 (105)
T ss_dssp             -----CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTTTCCTTTTTCCSCCCHHH
T ss_pred             CccccCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCCcccccCCCCCHHHH
Confidence            4456677889999999999999999999999999999976    7999999999999998     699999999999887


Q ss_pred             H-HHHHHHHhCCc
Q 044977           83 L-LCEAQKIFGNR   94 (479)
Q Consensus        83 l-LLelvkk~Gnr   94 (479)
                      . +++++..+|+.
T Consensus        84 ~rv~~~~~~~~~~   96 (105)
T 2aje_A           84 NRVLNAHGYWTQQ   96 (105)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            6 89999887753

>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}

Probab=99.46  E-value=4.5e-14  Score=109.00  Aligned_cols=49  Identities=22%  Similarity=0.428  Sum_probs=45.8

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCChhhHhhhcC-CCChhhhhhhhhhcc
Q 044977           19 RHIVTWTQQEDDILREQISIHGTENWSIIASKFK-DKTTRQCRRRWYTYL   67 (479)
Q Consensus        19 rkrg~WT~EEDekL~elV~k~G~~nWs~IAk~lp-gRT~kQCReRW~n~L   67 (479)
                      ..+++||+|||++|+++|.+||.++|..||++|+ +|+++|||+||.+++
T Consensus         7 ~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~   56 (58)
T 2elk_A            7 GFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTY   56 (58)
T ss_dssp             SCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence            3467899999999999999999889999999999 999999999999875

>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.45  E-value=3.4e-14  Score=113.96  Aligned_cols=61  Identities=20%  Similarity=0.243  Sum_probs=55.1

Q ss_pred             ccCCCCCCCCHHHHHHHHHHHHHhCC-----CChhhHhhhcCCCChhhhhhhhhhccCCCCCCCCC
Q 044977           16 KKERHIVTWTQQEDDILREQISIHGT-----ENWSIIASKFKDKTTRQCRRRWYTYLNSDFKKGGW   76 (479)
Q Consensus        16 Kkkrkrg~WT~EEDekL~elV~k~G~-----~nWs~IAk~lpgRT~kQCReRW~n~L~P~IkKg~W   76 (479)
                      +....+++||+|||++|+++|..||.     .+|..||.+|++||..|||.||.+||.+.++.|-.
T Consensus         3 ~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~Rt~~qcr~r~~~~l~~~~k~g~~   68 (75)
T 2yum_A            3 SGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQKYFIKLTKAGIP   68 (75)
T ss_dssp             CCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSSSCHHHHHHHHHHHHGGGSTTCSC
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCC
Confidence            45677889999999999999999996     68999999999999999999999999988777643

>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A

Probab=99.43  E-value=3.8e-14  Score=120.47  Aligned_cols=67  Identities=16%  Similarity=0.310  Sum_probs=62.5

Q ss_pred             CCCCCHHHHHHHHHHHHHhCC-chhhhchhcCCCChhHHHHHHHHHhhhhhhhhhhhhhhcccccCCC
Q 044977           73 KGGWSPEEDMLLCEAQKIFGN-RWTEIAKVVSGRTDNAVKNRFSTLCKKRAKYEALAKENNNAYINPN  139 (479)
Q Consensus        73 Kg~WT~EEDelLLelvkk~Gn-rWskIAk~LPGRTdnqcKNRW~slLkKr~K~~~wtkEEd~~lins~  139 (479)
                      ++.||+|||.+|+++|..||. +|..||..|||||+.||+.||.+++.+.++.++|+.+|+..++...
T Consensus         1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~p~i~~~~WT~eEd~~L~~~~   68 (107)
T 2k9n_A            1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMITRNPRQCRERWNNYINPALRTDPWSPEEDMLLDQKY   68 (107)
T ss_dssp             CCSSCHHHHHHHHHHHHHHCSSCHHHHHHHTTTSCHHHHHHHHHHHSSSCCTTCCCCHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCCHHHHhhhcCCCCHHHHHHHHHHHHcccccccccCHHHHHHHHHHH
Confidence            588999999999999999995 8999999999999999999999999999999999999998776544

>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.43  E-value=3.1e-14  Score=111.83  Aligned_cols=56  Identities=20%  Similarity=0.424  Sum_probs=51.2

Q ss_pred             cCCCCCCCCHHHHHHHHHHHHHhCCCChhhHhhhcCCCChhhhhhhhhhccCCCCCCC
Q 044977           17 KERHIVTWTQQEDDILREQISIHGTENWSIIASKFKDKTTRQCRRRWYTYLNSDFKKG   74 (479)
Q Consensus        17 kkrkrg~WT~EEDekL~elV~k~G~~nWs~IAk~lpgRT~kQCReRW~n~L~P~IkKg   74 (479)
                      +..++++||+|||++|+++|..||. +|..||+ +++|+++|||.||.++|+|.++++
T Consensus         5 P~~~k~~WT~eED~~L~~~~~~~g~-~W~~Ia~-~~gRt~~qcr~Rw~~~l~~~~~~~   60 (66)
T 2din_A            5 SSGKKTEWSREEEEKLLHLAKLMPT-QWRTIAP-IIGRTAAQCLEHYEFLLDKAAQRD   60 (66)
T ss_dssp             SSSSCCCCCHHHHHHHHHHHHHCTT-CHHHHHH-HHSSCHHHHHHHHHHHHHHHHHSS
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHcCC-CHHHHhc-ccCcCHHHHHHHHHHHhChHhcCC
Confidence            4567889999999999999999997 9999999 889999999999999999877664

>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}

Probab=99.42  E-value=1.5e-13  Score=106.12  Aligned_cols=50  Identities=26%  Similarity=0.557  Sum_probs=46.2

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHhC-CchhhhchhcC-CCChhHHHHHHHHHh
Q 044977           69 SDFKKGGWSPEEDMLLCEAQKIFG-NRWTEIAKVVS-GRTDNAVKNRFSTLC  118 (479)
Q Consensus        69 P~IkKg~WT~EEDelLLelvkk~G-nrWskIAk~LP-GRTdnqcKNRW~slL  118 (479)
                      ..+.+++||++||.+|+++|.+|| ++|.+||++|+ |||+.|||+||.+++
T Consensus         5 ~p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~   56 (58)
T 2elk_A            5 SSGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTY   56 (58)
T ss_dssp             CCSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence            456788999999999999999999 89999999999 999999999998764

>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}

Probab=99.14  E-value=1.2e-14  Score=121.12  Aligned_cols=56  Identities=23%  Similarity=0.337  Sum_probs=53.0

Q ss_pred             ccCCCCCCCCCCHHHHHHHHHHHHHhCCchhhhchhcCCCChhHHHHHHHHHhhhh
Q 044977           66 YLNSDFKKGGWSPEEDMLLCEAQKIFGNRWTEIAKVVSGRTDNAVKNRFSTLCKKR  121 (479)
Q Consensus        66 ~L~P~IkKg~WT~EEDelLLelvkk~GnrWskIAk~LPGRTdnqcKNRW~slLkKr  121 (479)
                      .+.|.+++++||+|||.+|+++|..||++|..||.+|||||++|||+||++++++.
T Consensus         9 ~~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~IA~~l~gRt~~q~k~r~~~~lrk~   64 (89)
T 2ltp_A            9 SGRENLYFQGWTEEEMGTAKKGLLEHGRNWSAIARMVGSKTVSQCKNFYFNYKKRQ   64 (89)
Confidence            56788999999999999999999999999999999999999999999999998764

>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A

Probab=99.42  E-value=1.3e-13  Score=108.96  Aligned_cols=51  Identities=27%  Similarity=0.485  Sum_probs=46.5

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhC-CchhhhchhcC--CCChhHHHHHHHHHhhhh
Q 044977           71 FKKGGWSPEEDMLLCEAQKIFG-NRWTEIAKVVS--GRTDNAVKNRFSTLCKKR  121 (479)
Q Consensus        71 IkKg~WT~EEDelLLelvkk~G-nrWskIAk~LP--GRTdnqcKNRW~slLkKr  121 (479)
                      .++++||+|||++|+++|.+|| ++|+.||+.++  |||+.|||+||++++++.
T Consensus         9 ~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~g   62 (64)
T 3sjm_A            9 TKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLG   62 (64)
T ss_dssp             -CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTT
T ss_pred             CCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhccC
Confidence            4689999999999999999999 58999999865  999999999999998764

>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}

Probab=99.42  E-value=6.4e-14  Score=122.97  Aligned_cols=67  Identities=21%  Similarity=0.331  Sum_probs=62.9

Q ss_pred             CCCCCHHHHHHHHHHHHHhC-CchhhhchhcCCCChhHHHHHHHHHhhhhhhhhhhhhhhcccccCCC
Q 044977           73 KGGWSPEEDMLLCEAQKIFG-NRWTEIAKVVSGRTDNAVKNRFSTLCKKRAKYEALAKENNNAYINPN  139 (479)
Q Consensus        73 Kg~WT~EEDelLLelvkk~G-nrWskIAk~LPGRTdnqcKNRW~slLkKr~K~~~wtkEEd~~lins~  139 (479)
                      +|+||+|||++|+++|..|| ++|..||..|||||+.||+.||.+++.+..++++|+.+|+..++..+
T Consensus         2 Kg~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~   69 (131)
T 3zqc_A            2 KGPFTEAEDDLIREYVKENGPQNWPRITSFLPNRSPKQCRERWFNHLDPAVVKHAWTPEEDETIFRNY   69 (131)
T ss_dssp             CSSCCHHHHHHHHHHHHHHCSCCGGGGTTSCTTSCHHHHHHHHHHHTSTTCCCSCCCHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHhCcCCHHHHHHHHCCCCHHHHHHHHhhccCccccCCCCCHHHHHHHHHHH
Confidence            68999999999999999999 68999999999999999999999999999999999999998776543

>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A

Probab=99.39  E-value=5.9e-13  Score=110.53  Aligned_cols=69  Identities=16%  Similarity=0.254  Sum_probs=61.2

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCChhhHhhh----cCCCChhhhhhhhhhcc-----CCCCCCC-CCCHHHHHHHHHHHHH
Q 044977           22 VTWTQQEDDILREQISIHGTENWSIIASK----FKDKTTRQCRRRWYTYL-----NSDFKKG-GWSPEEDMLLCEAQKI   90 (479)
Q Consensus        22 g~WT~EEDekL~elV~k~G~~nWs~IAk~----lpgRT~kQCReRW~n~L-----~P~IkKg-~WT~EEDelLLelvkk   90 (479)
                      ++||+|||+.|+++|++||.++|..|++.    |++||+.+|++||.|++     +|.++++ +..++....++.++..
T Consensus         1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~~~~~p~~~~~~~~p~~~~~rv~~~~a~   79 (83)
T 2ckx_A            1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDRVLAAHAY   79 (83)
T ss_dssp             CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHHSCGGGCCSSCCCHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHHHHhccCCcccccCCCCCHHHHHHHHHHHHH
Confidence            47999999999999999999999999996    89999999999999987     6777765 5677777889998875

>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=99.38  E-value=1.6e-13  Score=109.65  Aligned_cols=62  Identities=21%  Similarity=0.406  Sum_probs=54.5

Q ss_pred             ccCCCCCCCCHHHHHHHHHHHHHhCCCChhhHhhhcCCCChhhhhhhhhhccCCCCCCCCCCHH
Q 044977           16 KKERHIVTWTQQEDDILREQISIHGTENWSIIASKFKDKTTRQCRRRWYTYLNSDFKKGGWSPE   79 (479)
Q Consensus        16 Kkkrkrg~WT~EEDekL~elV~k~G~~nWs~IAk~lpgRT~kQCReRW~n~L~P~IkKg~WT~E   79 (479)
                      .+..++++||+|||++|+++|..||. +|..||.+|++|+..||+.||.++|++.++. .+.++
T Consensus         4 ~p~~~~~~WT~eEd~~l~~~~~~~G~-~W~~Ia~~~~~Rt~~q~k~r~~~~l~~~~~~-g~~~~   65 (72)
T 2cu7_A            4 GSSGYSVKWTIEEKELFEQGLAKFGR-RWTKISKLIGSRTVLQVKSYARQYFKNKVKC-GLDKE   65 (72)
T ss_dssp             CCSSCCCCCCHHHHHHHHHHHHHTCS-CHHHHHHHHSSSCHHHHHHHHHHHHHHHSCS-CTTCC
T ss_pred             CCCcCCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHcCCCCHHHHHHHHHHHHHHHHhc-CCCCC
Confidence            34667899999999999999999997 9999999999999999999999999887665 44443

>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=99.33  E-value=1e-12  Score=106.77  Aligned_cols=51  Identities=20%  Similarity=0.422  Sum_probs=47.6

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHhC----CchhhhchhcCCCChhHHHHHHHHHhh
Q 044977           69 SDFKKGGWSPEEDMLLCEAQKIFG----NRWTEIAKVVSGRTDNAVKNRFSTLCK  119 (479)
Q Consensus        69 P~IkKg~WT~EEDelLLelvkk~G----nrWskIAk~LPGRTdnqcKNRW~slLk  119 (479)
                      +.+.+++||++||.+|++++..||    ++|.+||.+|||||+++|++||+.+++
T Consensus        14 ~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr~Ry~~L~~   68 (73)
T 2cqr_A           14 ARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLLVS   68 (73)
T ss_dssp             TTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHHHS
T ss_pred             cccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence            456789999999999999999999    789999999999999999999998875

>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}

Probab=99.29  E-value=2.9e-12  Score=105.22  Aligned_cols=52  Identities=19%  Similarity=0.421  Sum_probs=48.0

Q ss_pred             ccccCCCCCCCCHHHHHHHHHHHHHhCCCChhhHhhhcCCCChhhhhhhhhhc
Q 044977           14 SKKKERHIVTWTQQEDDILREQISIHGTENWSIIASKFKDKTTRQCRRRWYTY   66 (479)
Q Consensus        14 skKkkrkrg~WT~EEDekL~elV~k~G~~nWs~IAk~lpgRT~kQCReRW~n~   66 (479)
                      +++....+++||+|||++|+++|..|| ++|..||++|++||..||+.||.++
T Consensus        11 ~~~~~~~~~~WT~eEd~~Ll~~v~~~G-~~W~~IA~~v~~RT~~qcr~r~~~~   62 (79)
T 2yus_A           11 KSKGASAGREWTEQETLLLLEALEMYK-DDWNKVSEHVGSRTQDECILHFLRL   62 (79)
T ss_dssp             CCCSSCCSCCCCHHHHHHHHHHHHHSS-SCHHHHHHHHSSCCHHHHHHHHTTS
T ss_pred             CccccccCCCcCHHHHHHHHHHHHHhC-CCHHHHHHHcCCCCHHHHHHHHHHh
Confidence            455556788999999999999999999 7999999999999999999999998

>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A

Probab=99.27  E-value=1.6e-12  Score=126.35  Aligned_cols=71  Identities=21%  Similarity=0.410  Sum_probs=59.3

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCCc------hhhhchhcCCCChhHHHHHHHHHhhhhhhhhhhhhhhcccccCCCC
Q 044977           69 SDFKKGGWSPEEDMLLCEAQKIFGNR------WTEIAKVVSGRTDNAVKNRFSTLCKKRAKYEALAKENNNAYINPNN  140 (479)
Q Consensus        69 P~IkKg~WT~EEDelLLelvkk~Gnr------WskIAk~LPGRTdnqcKNRW~slLkKr~K~~~wtkEEd~~lins~~  140 (479)
                      +.+++++||+|||++|+++|.++|++      |..||++|||||+++||+||+++|++++.+. |..+++..++....
T Consensus         4 ~~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpGRT~nsIRnRw~~~L~~~ln~v-y~~ded~~Li~d~~   80 (246)
T 1ign_A            4 PSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLEYV-YEVDKFGKLVRDDD   80 (246)
T ss_dssp             ----CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGGGCCCE-ECBCTTSCBCBCTT
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCCCCHHHHHHHHHHHHhhhcccc-cccCcchhhhhccC
Confidence            45788999999999999999999986      9999999999999999999999999987755 77777766655443

>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}

Probab=99.25  E-value=3.3e-12  Score=104.90  Aligned_cols=48  Identities=25%  Similarity=0.524  Sum_probs=44.7

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhCCchhhhchhcCCCChhHHHHHHHHH
Q 044977           70 DFKKGGWSPEEDMLLCEAQKIFGNRWTEIAKVVSGRTDNAVKNRFSTL  117 (479)
Q Consensus        70 ~IkKg~WT~EEDelLLelvkk~GnrWskIAk~LPGRTdnqcKNRW~sl  117 (479)
                      ...+++||+|||.+|++++.+||++|.+||++|++||+.||++||..+
T Consensus        15 ~~~~~~WT~eEd~~Ll~~v~~~G~~W~~IA~~v~~RT~~qcr~r~~~~   62 (79)
T 2yus_A           15 ASAGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRL   62 (79)
T ss_dssp             SCCSCCCCHHHHHHHHHHHHHSSSCHHHHHHHHSSCCHHHHHHHHTTS
T ss_pred             cccCCCcCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHh
Confidence            456789999999999999999999999999999999999999999754

>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}

Probab=99.22  E-value=1.2e-11  Score=100.48  Aligned_cols=55  Identities=20%  Similarity=0.449  Sum_probs=47.5

Q ss_pred             cCCCCCCCCHHHHHHHHHHHHHhCCCChhhHhhhcCCCChhhhhhhhhhccCCCCCCC
Q 044977           17 KERHIVTWTQQEDDILREQISIHGTENWSIIASKFKDKTTRQCRRRWYTYLNSDFKKG   74 (479)
Q Consensus        17 kkrkrg~WT~EEDekL~elV~k~G~~nWs~IAk~lpgRT~kQCReRW~n~L~P~IkKg   74 (479)
                      +..++++||+|||++|+++|..||. +|..||+.| +|++.||+.||.. |....+.|
T Consensus        19 P~i~k~~wT~EED~~L~~l~~~~G~-kW~~IA~~l-gRt~~q~knRw~~-L~~~~~~G   73 (73)
T 2llk_A           19 DRNHVGKYTPEEIEKLKELRIKHGN-DWATIGAAL-GRSASSVKDRCRL-MKDTCNTG   73 (73)
T ss_dssp             CCCCCCSSCHHHHHHHHHHHHHHSS-CHHHHHHHH-TSCHHHHHHHHHH-CSCCCSCC
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHCC-CHHHHHHHh-CCCHHHHHHHHHH-HHHHccCC
Confidence            4567889999999999999999996 599999999 9999999999974 65555443

>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=99.19  E-value=9.6e-12  Score=101.04  Aligned_cols=54  Identities=19%  Similarity=0.387  Sum_probs=47.7

Q ss_pred             cccCCCCCCCCHHHHHHHHHHHHHhCC---CChhhHhhhcCCCChhhhhhhhhhccC
Q 044977           15 KKKERHIVTWTQQEDDILREQISIHGT---ENWSIIASKFKDKTTRQCRRRWYTYLN   68 (479)
Q Consensus        15 kKkkrkrg~WT~EEDekL~elV~k~G~---~nWs~IAk~lpgRT~kQCReRW~n~L~   68 (479)
                      .+.+..+++||+|||.+|.++|..||.   .+|..||++|||||.+||+.||.+++.
T Consensus        12 ~~~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr~Ry~~L~~   68 (73)
T 2cqr_A           12 ERARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLLVS   68 (73)
T ss_dssp             CTTTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHHHS
T ss_pred             cccccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence            344557789999999999999999993   479999999999999999999998764

>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}

Probab=99.19  E-value=8.2e-12  Score=110.42  Aligned_cols=54  Identities=26%  Similarity=0.374  Sum_probs=49.6

Q ss_pred             cCCCCCCCCCCHHHHHHHHHHHHHhCC-chhhhchhc----CCCChhHHHHHHHHHhhh
Q 044977           67 LNSDFKKGGWSPEEDMLLCEAQKIFGN-RWTEIAKVV----SGRTDNAVKNRFSTLCKK  120 (479)
Q Consensus        67 L~P~IkKg~WT~EEDelLLelvkk~Gn-rWskIAk~L----PGRTdnqcKNRW~slLkK  120 (479)
                      +.+..++++||+|||+.|+++|.+||+ +|+.|+..+    +|||+.+||+||+++++.
T Consensus        11 ~~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~   69 (121)
T 2juh_A           11 LSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHT   69 (121)
T ss_dssp             CCCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHH
T ss_pred             ccCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhh
Confidence            456678999999999999999999997 999999984    999999999999999984

>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A

Probab=99.16  E-value=3e-11  Score=100.33  Aligned_cols=48  Identities=27%  Similarity=0.401  Sum_probs=44.6

Q ss_pred             CCCCHHHHHHHHHHHHHhCC-chhhhchh----cCCCChhHHHHHHHHHhhhh
Q 044977           74 GGWSPEEDMLLCEAQKIFGN-RWTEIAKV----VSGRTDNAVKNRFSTLCKKR  121 (479)
Q Consensus        74 g~WT~EEDelLLelvkk~Gn-rWskIAk~----LPGRTdnqcKNRW~slLkKr  121 (479)
                      .+||+|||+.|+++|.+||+ +|+.|++.    |+|||+++||+||+++++..
T Consensus         1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~~   53 (83)
T 2ckx_A            1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTA   53 (83)
T ss_dssp             CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHHHHhc
Confidence            47999999999999999997 99999996    89999999999999998753

>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3

Probab=99.12  E-value=5.9e-11  Score=100.49  Aligned_cols=50  Identities=28%  Similarity=0.601  Sum_probs=45.7

Q ss_pred             CCCCCCHHHHHHHHHHHHHhC----CchhhhchhcCCCChhHHHHHHHHHhhhh
Q 044977           72 KKGGWSPEEDMLLCEAQKIFG----NRWTEIAKVVSGRTDNAVKNRFSTLCKKR  121 (479)
Q Consensus        72 kKg~WT~EEDelLLelvkk~G----nrWskIAk~LPGRTdnqcKNRW~slLkKr  121 (479)
                      .+++||+|||++|++++..||    ++|.+||.+|||||+++|++||+.++...
T Consensus         7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpGRT~~q~k~ry~~l~~dv   60 (93)
T 2cjj_A            7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDI   60 (93)
T ss_dssp             -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence            467899999999999999996    78999999999999999999999988654

>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3

Probab=99.10  E-value=7.7e-11  Score=101.87  Aligned_cols=52  Identities=23%  Similarity=0.353  Sum_probs=47.9

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCC-chhhhchhc----CCCChhHHHHHHHHHhhh
Q 044977           69 SDFKKGGWSPEEDMLLCEAQKIFGN-RWTEIAKVV----SGRTDNAVKNRFSTLCKK  120 (479)
Q Consensus        69 P~IkKg~WT~EEDelLLelvkk~Gn-rWskIAk~L----PGRTdnqcKNRW~slLkK  120 (479)
                      +..++++||+|||+.|+++|.+||. +|+.|+..+    +|||+.+||+||+++++.
T Consensus         9 ~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~   65 (105)
T 2aje_A            9 QRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHT   65 (105)
T ss_dssp             CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHT
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhh
Confidence            4567899999999999999999997 999999965    899999999999999975

>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}

Probab=99.10  E-value=5.9e-11  Score=105.10  Aligned_cols=51  Identities=25%  Similarity=0.375  Sum_probs=46.7

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhCC-chhhhchhc----CCCChhHHHHHHHHHhhh
Q 044977           70 DFKKGGWSPEEDMLLCEAQKIFGN-RWTEIAKVV----SGRTDNAVKNRFSTLCKK  120 (479)
Q Consensus        70 ~IkKg~WT~EEDelLLelvkk~Gn-rWskIAk~L----PGRTdnqcKNRW~slLkK  120 (479)
                      ..++++||+|||+.|+++|.+||. +|+.|+..+    +|||+.+||+||+++++.
T Consensus        28 rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~   83 (122)
T 2roh_A           28 RRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHT   83 (122)
T ss_dssp             CCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhh
Confidence            446889999999999999999996 999999974    899999999999999964

>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1

Probab=99.09  E-value=8.4e-11  Score=93.31  Aligned_cols=49  Identities=22%  Similarity=0.416  Sum_probs=45.9

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCchhhhc---hhcCCCChhHHHHHHHHHhhh
Q 044977           72 KKGGWSPEEDMLLCEAQKIFGNRWTEIA---KVVSGRTDNAVKNRFSTLCKK  120 (479)
Q Consensus        72 kKg~WT~EEDelLLelvkk~GnrWskIA---k~LPGRTdnqcKNRW~slLkK  120 (479)
                      ++.+||+|||+.|++.|++||.+|+.|+   .+++|||+-++|+||+++.++
T Consensus         7 ~r~~WT~EE~~~L~~gV~k~G~~W~~I~~~y~f~~~RT~VdLKdk~r~L~k~   58 (62)
T 1x58_A            7 GRKDFTKEEVNYLFHGVKTMGNHWNSILWSFPFQKGRRAVDLAHKYHRLISG   58 (62)
T ss_dssp             CSSSCCHHHHHHHHHHHHHHCSCHHHHHHHSCCCTTCCHHHHHHHHHHHHTC
T ss_pred             CCCCCCHHHHHHHHHHHHHHhHhHHHHHHhCCCccCcccchHHHHHHHHHhc
Confidence            5789999999999999999999999999   577999999999999999875

>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}

Probab=98.67  E-value=1.1e-11  Score=103.42  Aligned_cols=53  Identities=28%  Similarity=0.569  Sum_probs=48.5

Q ss_pred             ccCCCCCCCCHHHHHHHHHHHHHhCCCChhhHhhhcCCCChhhhhhhhhhccCC
Q 044977           16 KKERHIVTWTQQEDDILREQISIHGTENWSIIASKFKDKTTRQCRRRWYTYLNS   69 (479)
Q Consensus        16 Kkkrkrg~WT~EEDekL~elV~k~G~~nWs~IAk~lpgRT~kQCReRW~n~L~P   69 (479)
                      -....+++||+|||++|+++|..||. +|..||..|++||..||+.||.++|+.
T Consensus        11 ~p~~~~~~WT~eEd~~l~~~~~~~G~-~W~~IA~~l~gRt~~q~k~r~~~~lrk   63 (89)
T 2ltp_A           11 RENLYFQGWTEEEMGTAKKGLLEHGR-NWSAIARMVGSKTVSQCKNFYFNYKKR   63 (89)
Confidence            34567889999999999999999997 899999999999999999999999863

>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3

Probab=98.89  E-value=9.2e-10  Score=93.19  Aligned_cols=48  Identities=10%  Similarity=0.427  Sum_probs=43.2

Q ss_pred             CCCCCCHHHHHHHHHHHHHhC---CCChhhHhhhcCCCChhhhhhhhhhcc
Q 044977           20 HIVTWTQQEDDILREQISIHG---TENWSIIASKFKDKTTRQCRRRWYTYL   67 (479)
Q Consensus        20 krg~WT~EEDekL~elV~k~G---~~nWs~IAk~lpgRT~kQCReRW~n~L   67 (479)
                      .+++||+|||.+|.+++..||   ..+|..||..|||||..||+.||.+++
T Consensus         7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpGRT~~q~k~ry~~l~   57 (93)
T 2cjj_A            7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILV   57 (93)
T ss_dssp             -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHH
Confidence            356899999999999999998   457999999999999999999998864

>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.84  E-value=3e-09  Score=82.85  Aligned_cols=47  Identities=9%  Similarity=0.034  Sum_probs=43.4

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCchhhhchhcCCCChhHHHHHHHHHh
Q 044977           72 KKGGWSPEEDMLLCEAQKIFGNRWTEIAKVVSGRTDNAVKNRFSTLC  118 (479)
Q Consensus        72 kKg~WT~EEDelLLelvkk~GnrWskIAk~LPGRTdnqcKNRW~slL  118 (479)
                      ..++||++|+.++++++..||++|..||.+|||||..+|+.+|....
T Consensus        11 ~~~~WT~eE~~~F~~~~~~~gk~w~~Ia~~l~~rt~~~~v~~Yy~~K   57 (61)
T 2eqr_A           11 FMNVWTDHEKEIFKDKFIQHPKNFGLIASYLERKSVPDCVLYYYLTK   57 (61)
T ss_dssp             CCCSCCHHHHHHHHHHHHHSTTCHHHHHHHCTTSCHHHHHHHHHHHT
T ss_pred             cCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHhc
Confidence            35789999999999999999999999999999999999999997554

>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}

Probab=98.80  E-value=5.2e-09  Score=88.89  Aligned_cols=65  Identities=22%  Similarity=0.400  Sum_probs=58.6

Q ss_pred             hhhhhhhhhccCCCCCCCCCCHHHHHHHHHHHHHhCCchhhhchhc-----CCCChhHHHHHHHHHhhhhhhhh
Q 044977           57 RQCRRRWYTYLNSDFKKGGWSPEEDMLLCEAQKIFGNRWTEIAKVV-----SGRTDNAVKNRFSTLCKKRAKYE  125 (479)
Q Consensus        57 kQCReRW~n~L~P~IkKg~WT~EEDelLLelvkk~GnrWskIAk~L-----PGRTdnqcKNRW~slLkKr~K~~  125 (479)
                      .=+.++|.++|.+    ++||.||+..|++|+++||.+|..|+..+     ++||..++|+||..+.++-.+..
T Consensus        18 ~yt~eeY~~~L~~----~~WTkEETd~Lf~L~~~fdlRW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~~l~~~r   87 (93)
T 3hm5_A           18 VYSEQEYQLYLHD----DAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVR   87 (93)
T ss_dssp             CCCHHHHHHHTCB----TTBCHHHHHHHHHHHHHTTTCHHHHHHHSCTTTSCCCCHHHHHHHHHHHHHHHHHHT
T ss_pred             ccCHHHHHHHcCC----CCCCHHHHHHHHHHHHHhCCCeeeehhhhccCCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence            4578999999986    79999999999999999999999999999     58999999999999998765443

>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.75  E-value=1.3e-08  Score=79.29  Aligned_cols=54  Identities=24%  Similarity=0.512  Sum_probs=47.4

Q ss_pred             ccccCCCCCCCCHHHHHHHHHHHHHhCCCChhhHhhhcCCCChhhhhhhhhhccC
Q 044977           14 SKKKERHIVTWTQQEDDILREQISIHGTENWSIIASKFKDKTTRQCRRRWYTYLN   68 (479)
Q Consensus        14 skKkkrkrg~WT~EEDekL~elV~k~G~~nWs~IAk~lpgRT~kQCReRW~n~L~   68 (479)
                      +.+.+....+||+||++++.+++..|| .+|..||..|++|+..||+.+|+...+
T Consensus         5 ~~~~r~~~~~WT~eE~~~F~~~~~~~g-k~w~~Ia~~l~~rt~~~~v~~Yy~~Kk   58 (61)
T 2eqr_A            5 SSGDRQFMNVWTDHEKEIFKDKFIQHP-KNFGLIASYLERKSVPDCVLYYYLTKK   58 (61)
T ss_dssp             CCCCCSCCCSCCHHHHHHHHHHHHHST-TCHHHHHHHCTTSCHHHHHHHHHHHTC
T ss_pred             cccccccCCCCCHHHHHHHHHHHHHhC-CCHHHHHHHcCCCCHHHHHHHHHHhcC
Confidence            445556778999999999999999999 589999999999999999999976543

>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=98.72  E-value=1.3e-08  Score=82.45  Aligned_cols=49  Identities=24%  Similarity=0.392  Sum_probs=44.4

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhC----CchhhhchhcCCCChhHHHHHHHHHhh
Q 044977           70 DFKKGGWSPEEDMLLCEAQKIFG----NRWTEIAKVVSGRTDNAVKNRFSTLCK  119 (479)
Q Consensus        70 ~IkKg~WT~EEDelLLelvkk~G----nrWskIAk~LPGRTdnqcKNRW~slLk  119 (479)
                      ..+.+.||.|||++|.+++.+|+    ++|.+||.++ |||..+|++||+.+.+
T Consensus         5 ~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l-gRt~~eV~~~y~~L~~   57 (72)
T 2cqq_A            5 SSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLKD   57 (72)
T ss_dssp             CCCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHHHH
T ss_pred             CCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh-CCCHHHHHHHHHHHHH
Confidence            45678999999999999999997    6899999998 9999999999988754

>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*

Probab=98.65  E-value=2.1e-08  Score=96.98  Aligned_cols=48  Identities=25%  Similarity=0.533  Sum_probs=45.2

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCchhhhchhcCCCChhHHHHHHHHHhhh
Q 044977           73 KGGWSPEEDMLLCEAQKIFGNRWTEIAKVVSGRTDNAVKNRFSTLCKK  120 (479)
Q Consensus        73 Kg~WT~EEDelLLelvkk~GnrWskIAk~LPGRTdnqcKNRW~slLkK  120 (479)
                      .++||+||+.++++++.+||++|..||+.|++||.+|||++|++..++
T Consensus       133 s~~WTeEE~~lFleAl~kYGKDW~~IAk~VgTKT~~QcKnfY~~~kKR  180 (235)
T 2iw5_B          133 NARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRR  180 (235)
T ss_dssp             CSSCCHHHHHHHHHHHHHHSSCHHHHHHHHSSCCHHHHHHHHHHTTTT
T ss_pred             CCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence            568999999999999999999999999999999999999999977655

>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1

Probab=98.59  E-value=4.1e-08  Score=77.96  Aligned_cols=49  Identities=14%  Similarity=0.236  Sum_probs=44.2

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCChhhHhh---hcCCCChhhhhhhhhhccC
Q 044977           19 RHIVTWTQQEDDILREQISIHGTENWSIIAS---KFKDKTTRQCRRRWYTYLN   68 (479)
Q Consensus        19 rkrg~WT~EEDekL~elV~k~G~~nWs~IAk---~lpgRT~kQCReRW~n~L~   68 (479)
                      +.+.+||+|||+.|++.|++||. +|..|+.   .+++|+...+..||++..+
T Consensus         6 ~~r~~WT~EE~~~L~~gV~k~G~-~W~~I~~~y~f~~~RT~VdLKdk~r~L~k   57 (62)
T 1x58_A            6 SGRKDFTKEEVNYLFHGVKTMGN-HWNSILWSFPFQKGRRAVDLAHKYHRLIS   57 (62)
T ss_dssp             CCSSSCCHHHHHHHHHHHHHHCS-CHHHHHHHSCCCTTCCHHHHHHHHHHHHT
T ss_pred             CCCCCCCHHHHHHHHHHHHHHhH-hHHHHHHhCCCccCcccchHHHHHHHHHh
Confidence            46779999999999999999997 9999994   6679999999999998654

>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=98.37  E-value=3.4e-07  Score=74.70  Aligned_cols=49  Identities=18%  Similarity=0.297  Sum_probs=44.0

Q ss_pred             CCCCCCHHHHHHHHHHHHHhC----CchhhhchhcCCCChhHHHHHHHHHhhh
Q 044977           72 KKGGWSPEEDMLLCEAQKIFG----NRWTEIAKVVSGRTDNAVKNRFSTLCKK  120 (479)
Q Consensus        72 kKg~WT~EEDelLLelvkk~G----nrWskIAk~LPGRTdnqcKNRW~slLkK  120 (479)
                      ....||.+|+++|.+++..|+    ++|.+||.+|||||..+|+.||..+++.
T Consensus         7 ~~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~gKT~eE~~~hY~~l~~~   59 (73)
T 1wgx_A            7 GDKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENPRG   59 (73)
T ss_dssp             SSSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHSSSS
T ss_pred             CCCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCCCCHHHHHHHHHHHHhc
Confidence            346899999999999999998    4799999999999999999999887553

>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=98.36  E-value=3e-07  Score=74.37  Aligned_cols=47  Identities=13%  Similarity=0.250  Sum_probs=41.9

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCC---CChhhHhhhcCCCChhhhhhhhhhcc
Q 044977           20 HIVTWTQQEDDILREQISIHGT---ENWSIIASKFKDKTTRQCRRRWYTYL   67 (479)
Q Consensus        20 krg~WT~EEDekL~elV~k~G~---~nWs~IAk~lpgRT~kQCReRW~n~L   67 (479)
                      ..+.||.|||.+|.+++..|+.   .+|..||..+ +|+..+|+.||....
T Consensus         7 ~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l-gRt~~eV~~~y~~L~   56 (72)
T 2cqq_A            7 GAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLK   56 (72)
T ss_dssp             CCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh-CCCHHHHHHHHHHHH
Confidence            4568999999999999999984   4699999998 799999999998654

>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*

Probab=98.36  E-value=2.3e-07  Score=97.85  Aligned_cols=46  Identities=26%  Similarity=0.530  Sum_probs=42.7

Q ss_pred             CCCCHHHHHHHHHHHHHhCCchhhhchhcCCCChhHHHHHHHHHhh
Q 044977           74 GGWSPEEDMLLCEAQKIFGNRWTEIAKVVSGRTDNAVKNRFSTLCK  119 (479)
Q Consensus        74 g~WT~EEDelLLelvkk~GnrWskIAk~LPGRTdnqcKNRW~slLk  119 (479)
                      ..||++|-.++++++.+||.+|..||.+++.||..|||++|....+
T Consensus       381 ~~WT~eE~~~f~~al~~yGkdw~~IA~~VgTKT~~Qvk~fy~~~kk  426 (482)
T 2xag_B          381 ARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRR  426 (482)
T ss_dssp             SCCCHHHHHHHHHHHHHHTTCHHHHHHHHSSCCHHHHHHHHHHTTT
T ss_pred             CCCCHHHHHHHHHHHHHHCcCHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            4799999999999999999999999999999999999999976544

>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3

Probab=98.34  E-value=3.2e-07  Score=71.59  Aligned_cols=48  Identities=13%  Similarity=0.333  Sum_probs=43.4

Q ss_pred             CCCCCHHHHHHHHHHHHHh--------CCCChhhHhh-hcCCCChhhhhhhhhhccC
Q 044977           21 IVTWTQQEDDILREQISIH--------GTENWSIIAS-KFKDKTTRQCRRRWYTYLN   68 (479)
Q Consensus        21 rg~WT~EEDekL~elV~k~--------G~~nWs~IAk-~lpgRT~kQCReRW~n~L~   68 (479)
                      |.+||+|||..|.++|..|        |..-|..+++ .++.+|..+||+||.++|.
T Consensus         2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy~k~l~   58 (59)
T 1fex_A            2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHLR   58 (59)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHHHHHcc
Confidence            6799999999999999999        4335999999 8999999999999999885

>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*

Probab=98.22  E-value=1.2e-06  Score=84.96  Aligned_cols=53  Identities=17%  Similarity=0.312  Sum_probs=47.7

Q ss_pred             cccCCCCCCCCHHHHHHHHHHHHHhCCCChhhHhhhcCCCChhhhhhhhhhccC
Q 044977           15 KKKERHIVTWTQQEDDILREQISIHGTENWSIIASKFKDKTTRQCRRRWYTYLN   68 (479)
Q Consensus        15 kKkkrkrg~WT~EEDekL~elV~k~G~~nWs~IAk~lpgRT~kQCReRW~n~L~   68 (479)
                      ....+...+||+||+.++++++..|| .+|..||+.+++||..||+.+|+++.+
T Consensus       127 e~~~k~s~~WTeEE~~lFleAl~kYG-KDW~~IAk~VgTKT~~QcKnfY~~~kK  179 (235)
T 2iw5_B          127 EVIQKCNARWTTEEQLLAVQAIRKYG-RDFQAISDVIGNKSVVQVKNFFVNYRR  179 (235)
T ss_dssp             CCCCCCCSSCCHHHHHHHHHHHHHHS-SCHHHHHHHHSSCCHHHHHHHHHHTTT
T ss_pred             CCCCccCCCCCHHHHHHHHHHHHHHC-cCHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence            34446678999999999999999999 589999999999999999999998875

>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=98.20  E-value=1.3e-06  Score=71.17  Aligned_cols=47  Identities=17%  Similarity=0.395  Sum_probs=42.8

Q ss_pred             CCCCHHHHHHHHHHHHHhCC---CChhhHhhhcCCCChhhhhhhhhhccC
Q 044977           22 VTWTQQEDDILREQISIHGT---ENWSIIASKFKDKTTRQCRRRWYTYLN   68 (479)
Q Consensus        22 g~WT~EEDekL~elV~k~G~---~nWs~IAk~lpgRT~kQCReRW~n~L~   68 (479)
                      ..||.+|+.+|.+++..|+.   ++|..||..+|+|+..+|+.||...+.
T Consensus         9 ~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~gKT~eE~~~hY~~l~~   58 (73)
T 1wgx_A            9 KEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENPR   58 (73)
T ss_dssp             SCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHSSS
T ss_pred             CCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCCCCHHHHHHHHHHHHh
Confidence            57999999999999999975   479999999999999999999987654

>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3

Probab=98.08  E-value=3e-06  Score=66.05  Aligned_cols=47  Identities=17%  Similarity=0.355  Sum_probs=42.0

Q ss_pred             CCCCCHHHHHHHHHHHHHh--------CCc-hhhhch-hcCCCChhHHHHHHHHHhh
Q 044977           73 KGGWSPEEDMLLCEAQKIF--------GNR-WTEIAK-VVSGRTDNAVKNRFSTLCK  119 (479)
Q Consensus        73 Kg~WT~EEDelLLelvkk~--------Gnr-WskIAk-~LPGRTdnqcKNRW~slLk  119 (479)
                      |.+||+|||..|++.|..+        ||. |..+++ .+|++|-.++|+||...|+
T Consensus         2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy~k~l~   58 (59)
T 1fex_A            2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHLR   58 (59)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHHHHHcc
Confidence            5689999999999999999        543 999999 8999999999999987653

>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A

Probab=98.07  E-value=1.4e-05  Score=80.17  Aligned_cols=101  Identities=20%  Similarity=0.292  Sum_probs=80.6

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCChhhHhhhcCCCChhhhhhh----hhhc-----------------------------
Q 044977           20 HIVTWTQQEDDILREQISIHGTENWSIIASKFKDKTTRQCRRR----WYTY-----------------------------   66 (479)
Q Consensus        20 krg~WT~EEDekL~elV~k~G~~nWs~IAk~lpgRT~kQCReR----W~n~-----------------------------   66 (479)
                      .=+.||..+...++.++.+||..+|..||..|++++...++.-    |.+|                             
T Consensus       109 GF~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~~Kt~eEV~~Y~~vFw~ry~ei~d~ek~~~~IE~gE~ki~r~~~~~~~  188 (304)
T 1ofc_X          109 GFTAWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIEYNAVFWERCTELQDIERIMGQIERGEGKIQRRLSIKKA  188 (304)
T ss_dssp             SCTTCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHHHHHHHHHHGGGCTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhcccCHHHHHHHHHHHHHhCHHHHHHHHHHhcCCCHHHHHHHHHHHHHhHHHhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3346999999999999999999999999999999997665321    1111                             


Q ss_pred             -----------------cCCCCCCCCCCHHHHHHHHHHHHHhC----Cchhhhch------------hcCCCChhHHHHH
Q 044977           67 -----------------LNSDFKKGGWSPEEDMLLCEAQKIFG----NRWTEIAK------------VVSGRTDNAVKNR  113 (479)
Q Consensus        67 -----------------L~P~IkKg~WT~EEDelLLelvkk~G----nrWskIAk------------~LPGRTdnqcKNR  113 (479)
                                       ..+..+...||++||..|+-++.+||    +.|..|..            ++..||+.+|..|
T Consensus       189 l~~Ki~~~~~P~~~L~i~y~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwf~kSRTp~el~rR  268 (304)
T 1ofc_X          189 LDQKMSRYRAPFHQLRLQYGNNKGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRR  268 (304)
T ss_dssp             HHHHHHTCSSHHHHCCCCCTTCCCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHH
T ss_pred             HHHHHHHhcCcHHHhccccCCCCCCccCHHHHHHHHHHHHHhcCCCcchHHHHHHHHHhCcchhhhHHHhcCCHHHHHHH
Confidence                             01223456899999999999999999    47999962            4577999999999


Q ss_pred             HHHHhhh
Q 044977          114 FSTLCKK  120 (479)
Q Consensus       114 W~slLkK  120 (479)
                      .+++++-
T Consensus       269 c~tLi~~  275 (304)
T 1ofc_X          269 CNTLITL  275 (304)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9999874

>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}

Probab=97.87  E-value=3.2e-06  Score=69.23  Aligned_cols=43  Identities=28%  Similarity=0.529  Sum_probs=38.7

Q ss_pred             CCCCCHHHHHHHHHHHHHhCC----chhhhchhcCCCChhHHHHHHH
Q 044977           73 KGGWSPEEDMLLCEAQKIFGN----RWTEIAKVVSGRTDNAVKNRFS  115 (479)
Q Consensus        73 Kg~WT~EEDelLLelvkk~Gn----rWskIAk~LPGRTdnqcKNRW~  115 (479)
                      ...||.+|+++|..+...|+.    ||.+||..|||||..+|+.+|.
T Consensus        20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpGKT~eEVk~hY~   66 (74)
T 4eef_G           20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHYE   66 (74)
T ss_dssp             --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCSSCHHHHHGGGC
T ss_pred             CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCCCCHHHHHHHHH
Confidence            457999999999999999984    8999999999999999999984

>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.81  E-value=3.2e-05  Score=60.67  Aligned_cols=49  Identities=12%  Similarity=0.265  Sum_probs=44.7

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCchhhhch-hcCCCChhHHHHHHHH
Q 044977           68 NSDFKKGGWSPEEDMLLCEAQKIFGNRWTEIAK-VVSGRTDNAVKNRFST  116 (479)
Q Consensus        68 ~P~IkKg~WT~EEDelLLelvkk~GnrWskIAk-~LPGRTdnqcKNRW~s  116 (479)
                      .|.+....||+||-.+..+++.+||.+|..|++ .|++||..+|...|..
T Consensus         4 ~p~~~~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY~   53 (63)
T 2yqk_A            4 GSSGIEKCWTEDEVKRFVKGLRQYGKNFFRIRKELLPNKETGELITFYYY   53 (63)
T ss_dssp             CCCCCCCSCCHHHHHHHHHHHHHTCSCHHHHHHHSCTTSCHHHHHHHHHH
T ss_pred             CCCcCCCCcCHHHHHHHHHHHHHhCccHHHHHHHHcCCCcHHHHHHHHhc
Confidence            467778899999999999999999999999999 5899999999988863

>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3

Probab=97.79  E-value=2.1e-05  Score=66.82  Aligned_cols=45  Identities=22%  Similarity=0.395  Sum_probs=42.5

Q ss_pred             CCCHHHHHHHHHHHHHhCC---chhhhchhcCCCChhHHHHHHHHHhh
Q 044977           75 GWSPEEDMLLCEAQKIFGN---RWTEIAKVVSGRTDNAVKNRFSTLCK  119 (479)
Q Consensus        75 ~WT~EEDelLLelvkk~Gn---rWskIAk~LPGRTdnqcKNRW~slLk  119 (479)
                      -||.+||..||...++-|.   .|+.||+.|.+|+++||++||+.+++
T Consensus        35 lWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~Nks~nqV~~RFq~Lm~   82 (95)
T 1ug2_A           35 LWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELMQ   82 (95)
T ss_dssp             SSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHHH
T ss_pred             EeccccCHHHHHHHHhcCCChhHHHHHHHHHccCCHHHHHHHHHHHHH
Confidence            4999999999999999986   89999999999999999999999876

>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}

Probab=96.82  E-value=6.7e-06  Score=66.51  Aligned_cols=44  Identities=23%  Similarity=0.394  Sum_probs=41.3

Q ss_pred             CCCHHHHHHHHHHHHHhCC---chhhhchhcCCCChhHHHHHHHHHhh
Q 044977           75 GWSPEEDMLLCEAQKIFGN---RWTEIAKVVSGRTDNAVKNRFSTLCK  119 (479)
Q Consensus        75 ~WT~EEDelLLelvkk~Gn---rWskIAk~LPGRTdnqcKNRW~slLk  119 (479)
                      -||.|||..||..+++-|.   .|..||..| +||++||++||+.+++
T Consensus        16 lWTReeDR~IL~~cq~~G~s~~tfa~iA~~L-nks~~QV~~RF~~Lm~   62 (70)
T 2lr8_A           16 LWTRNDDRVILLECQKRGPSSKTFAYLAAKL-DKNPNQVSERFQQLMK   62 (70)
Confidence            4999999999999999997   799999999 9999999999998765

>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}

Probab=97.62  E-value=1.9e-05  Score=64.72  Aligned_cols=44  Identities=16%  Similarity=0.376  Sum_probs=39.2

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCC---ChhhHhhhcCCCChhhhhhhhh
Q 044977           21 IVTWTQQEDDILREQISIHGTE---NWSIIASKFKDKTTRQCRRRWY   64 (479)
Q Consensus        21 rg~WT~EEDekL~elV~k~G~~---nWs~IAk~lpgRT~kQCReRW~   64 (479)
                      ...||.||+.+|..++..|+.+   +|.+||..+|||+..+|+.+|.
T Consensus        20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpGKT~eEVk~hY~   66 (74)
T 4eef_G           20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHYE   66 (74)
T ss_dssp             --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCSSCHHHHHGGGC
T ss_pred             CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCCCCHHHHHHHHH
Confidence            4589999999999999999754   7999999999999999999974

>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*

Probab=97.48  E-value=0.00016  Score=61.55  Aligned_cols=60  Identities=23%  Similarity=0.445  Sum_probs=50.4

Q ss_pred             hhhhccCCCCCCCCCCHHHHHHHHHHHHHhCCchhhhchhcC-----CCChhHHHHHHHHHhhhhhhhh
Q 044977           62 RWYTYLNSDFKKGGWSPEEDMLLCEAQKIFGNRWTEIAKVVS-----GRTDNAVKNRFSTLCKKRAKYE  125 (479)
Q Consensus        62 RW~n~L~P~IkKg~WT~EEDelLLelvkk~GnrWskIAk~LP-----GRTdnqcKNRW~slLkKr~K~~  125 (479)
                      .|..+|.    ...||.||...|++++++|+-+|..|+..+.     +||-.++|.||..+.++-.+..
T Consensus        23 EY~~~L~----~~~WT~eETd~LfdLc~~fdlRw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~~l~~~r   87 (93)
T 4iej_A           23 EYQLYLH----DDAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVR   87 (93)
T ss_dssp             HHHHHTC----BTTBCHHHHHHHHHHHHHTTTCHHHHHHHCCTTTSCCCCHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHhC----CCCCCHHHHHHHHHHHHHcCCCeEEEeeccccCCCCCCCHHHHHHHHHHHHHHHHHhh
Confidence            3444554    2589999999999999999999999999873     7999999999999998865543

>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.37  E-value=0.00028  Score=55.25  Aligned_cols=51  Identities=18%  Similarity=0.231  Sum_probs=44.1

Q ss_pred             cccCCCCCCCCHHHHHHHHHHHHHhCCCChhhHhh-hcCCCChhhhhhhhhhc
Q 044977           15 KKKERHIVTWTQQEDDILREQISIHGTENWSIIAS-KFKDKTTRQCRRRWYTY   66 (479)
Q Consensus        15 kKkkrkrg~WT~EEDekL~elV~k~G~~nWs~IAk-~lpgRT~kQCReRW~n~   66 (479)
                      ..+......||+||-.+..+++..||. +|..|++ .+++|+..+|.+-|+..
T Consensus         3 ~~p~~~~~~WT~eE~~~Fe~~l~~yGK-df~~I~~~~v~~Kt~~~~v~fYY~w   54 (63)
T 2yqk_A            3 SGSSGIEKCWTEDEVKRFVKGLRQYGK-NFFRIRKELLPNKETGELITFYYYW   54 (63)
T ss_dssp             CCCCCCCCSCCHHHHHHHHHHHHHTCS-CHHHHHHHSCTTSCHHHHHHHHHHH
T ss_pred             CCCCcCCCCcCHHHHHHHHHHHHHhCc-cHHHHHHHHcCCCcHHHHHHHHhcc
Confidence            345666789999999999999999996 8999999 58999999998887643

>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3

Probab=97.34  E-value=0.00016  Score=57.82  Aligned_cols=43  Identities=19%  Similarity=0.390  Sum_probs=40.3

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCchhhhch-hcCCCChhHHHHHHH
Q 044977           73 KGGWSPEEDMLLCEAQKIFGNRWTEIAK-VVSGRTDNAVKNRFS  115 (479)
Q Consensus        73 Kg~WT~EEDelLLelvkk~GnrWskIAk-~LPGRTdnqcKNRW~  115 (479)
                      ...||++|-.+..+++.+||.+|..|++ .||+||..+|...|.
T Consensus         8 ~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY   51 (70)
T 2crg_A            8 MEEWSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYYY   51 (70)
T ss_dssp             SCCCCHHHHHHHHHHHHHTCSCHHHHHHTTCSSSCHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHhCccHHHHHHHHcCCCCHHHHHHHHH
Confidence            4579999999999999999999999999 599999999999886

>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A

Probab=97.27  E-value=0.00028  Score=59.50  Aligned_cols=45  Identities=16%  Similarity=0.104  Sum_probs=41.5

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCchhhhchhcCCCChhHHHHHHHHH
Q 044977           73 KGGWSPEEDMLLCEAQKIFGNRWTEIAKVVSGRTDNAVKNRFSTL  117 (479)
Q Consensus        73 Kg~WT~EEDelLLelvkk~GnrWskIAk~LPGRTdnqcKNRW~sl  117 (479)
                      ...||++|..+..+++..||.+|..||..||+||..+|-.+|...
T Consensus        43 ~~~WT~eE~~~F~~~~~~~gK~F~~Ia~~l~~Kt~~~cV~~YY~~   87 (94)
T 4a69_C           43 MNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYYLT   87 (94)
T ss_dssp             TCCCCHHHHHHHHHHHHHSTTCHHHHHHTCTTCCHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHHHHHhcc
Confidence            457999999999999999999999999999999999999988643

>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*

Probab=97.22  E-value=0.00028  Score=74.62  Aligned_cols=50  Identities=18%  Similarity=0.344  Sum_probs=44.9

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhCCCChhhHhhhcCCCChhhhhhhhhhccC
Q 044977           18 ERHIVTWTQQEDDILREQISIHGTENWSIIASKFKDKTTRQCRRRWYTYLN   68 (479)
Q Consensus        18 krkrg~WT~EEDekL~elV~k~G~~nWs~IAk~lpgRT~kQCReRW~n~L~   68 (479)
                      .+...+||.||-.++++++.+||. +|..||..+++|+..||+..|.++-+
T Consensus       377 ~~~~~~WT~eE~~~f~~al~~yGk-dw~~IA~~VgTKT~~Qvk~fy~~~kk  426 (482)
T 2xag_B          377 QKCNARWTTEEQLLAVQAIRKYGR-DFQAISDVIGNKSVVQVKNFFVNYRR  426 (482)
T ss_dssp             CCCCSCCCHHHHHHHHHHHHHHTT-CHHHHHHHHSSCCHHHHHHHHHHTTT
T ss_pred             cccCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            356779999999999999999995 99999999999999999999876543

>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}

Probab=97.22  E-value=0.0014  Score=60.69  Aligned_cols=103  Identities=20%  Similarity=0.256  Sum_probs=70.0

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhC--CCChhhHhhh--cCCCChhhhhh----hhh---h---------------------
Q 044977           18 ERHIVTWTQQEDDILREQISIHG--TENWSIIASK--FKDKTTRQCRR----RWY---T---------------------   65 (479)
Q Consensus        18 krkrg~WT~EEDekL~elV~k~G--~~nWs~IAk~--lpgRT~kQCRe----RW~---n---------------------   65 (479)
                      +.....||..|-..|+.++.+||  .++|..|+..  +.+|+...++.    -|.   .                     
T Consensus         4 ~~~~~~~t~~E~r~fira~~kfG~~~~r~~~I~~da~L~~Ks~~~v~~y~~~f~~~c~~~~~~~~~~~~~~~~~~~~~~~   83 (211)
T 4b4c_A            4 RENIKGFSDAEIRRFIKSYKKFGGPLERLDAIARDAELVDKSETDLRRLGELVHNGCIKALKDSSSGTERTGGRLGKVKG   83 (211)
T ss_dssp             ----CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHHTTCTTSCHHHHHHHHHHHHHHHHHHHC-----------------C
T ss_pred             cccCCCCCHHHHHHHHHHHHHHCCchhHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccc
Confidence            34556899999999999999999  5689999975  55776543221    000   0                     


Q ss_pred             -----------------------cc----------------C----CCCCCCCCCHHHHHHHHHHHHHhC-Cchhhhchh
Q 044977           66 -----------------------YL----------------N----SDFKKGGWSPEEDMLLCEAQKIFG-NRWTEIAKV  101 (479)
Q Consensus        66 -----------------------~L----------------~----P~IkKg~WT~EEDelLLelvkk~G-nrWskIAk~  101 (479)
                                             .|                .    +......||.+||..||..+.+|| ++|..|-.-
T Consensus        84 ~~~~~~~v~~nA~~il~R~~~l~~L~~~v~~~~~~~~~~~i~~~~~~~~~~~~W~~~~D~~LL~Gi~k~G~g~w~~Ir~D  163 (211)
T 4b4c_A           84 PTFRISGVQVNAKLVISHEEELIPLHKSIPSDPEERKQYTIPCHTKAAHFDIDWGKEDDSNLLIGIYEYGYGSWEMIKMD  163 (211)
T ss_dssp             CEEEETTEEEEHHHHHHHHHHHHHHHHHSCSSHHHHHTCCCCSCCCCCCSSSCCCHHHHHHHHHHHHHHCTTCHHHHHHC
T ss_pred             hhhhhcccchhHHHHHHhHHHHHHHHHHHHhchhhHHHcCcCCCCCCCCCCCCccHHHHHHHHHHHHHHCcCcHHHHHhC
Confidence                                   00                0    111123599999999999999999 999998552


Q ss_pred             --c----------CCCC--hhHHHHHHHHHhhh
Q 044977          102 --V----------SGRT--DNAVKNRFSTLCKK  120 (479)
Q Consensus       102 --L----------PGRT--dnqcKNRW~slLkK  120 (479)
                        +          ..|+  ...+..|..++++-
T Consensus       164 ~~l~~~~k~~~~~~~k~p~a~~L~rR~~~Ll~~  196 (211)
T 4b4c_A          164 PDLSLTHKILPDDPDKKPQAKQLQTRADYLIKL  196 (211)
T ss_dssp             SSSSCTTTSSCSSTTSSCCHHHHHHHHHHHHHH
T ss_pred             hhcCccccccccccccCCChHHHHHHHHHHHHH
Confidence              1          1344  45789999888764

>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*

Probab=96.96  E-value=0.00031  Score=57.26  Aligned_cols=49  Identities=27%  Similarity=0.496  Sum_probs=39.5

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCC------C---ChhhHhhhcC----CCChhhhhhhhhhcc
Q 044977           19 RHIVTWTQQEDDILREQISIHGT------E---NWSIIASKFK----DKTTRQCRRRWYTYL   67 (479)
Q Consensus        19 rkrg~WT~EEDekL~elV~k~G~------~---nWs~IAk~lp----gRT~kQCReRW~n~L   67 (479)
                      ++...||.+|...|+++...+..      .   -|..||..|.    .|++.||+.+|.|..
T Consensus         2 kR~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~   63 (86)
T 2ebi_A            2 KRAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLL   63 (86)
T ss_dssp             CCSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence            34568999999999999866421      1   4999999986    699999999998743

>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A

Probab=96.93  E-value=0.0041  Score=64.05  Aligned_cols=100  Identities=21%  Similarity=0.254  Sum_probs=78.0

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCChhhHhhhcC-CCChhhhhh----hhhhc-----------------------------
Q 044977           21 IVTWTQQEDDILREQISIHGTENWSIIASKFK-DKTTRQCRR----RWYTY-----------------------------   66 (479)
Q Consensus        21 rg~WT~EEDekL~elV~k~G~~nWs~IAk~lp-gRT~kQCRe----RW~n~-----------------------------   66 (479)
                      =+.||.-+=..++.++.+||..+-..||..|. +++...++.    -|.+|                             
T Consensus       123 F~~WnrrDF~~FI~a~~kyGR~d~~~IA~ev~~~Kt~eEV~~Y~~vFw~Ry~Ei~d~erii~~IEkgE~ki~r~~~~~~~  202 (374)
T 2y9y_A          123 FTNWNKLEFRKFITVSGKYGRNSIQAIARELAPGKTLEEVRAYAKAFWSNIERIEDYEKYLKIIENEEEKIKRVKMQQEA  202 (374)
T ss_dssp             CCCSCHHHHHHHHHHHHHHCTTCHHHHHSSCCCSSSHHHHHHHHHHHHHTCSSCSCCTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             hcccCHHHHHHHHHHHHHhCHhHHHHHHHHHccCCCHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34699999999999999999999999999998 888766541    12111                             


Q ss_pred             --------------c----CCC-CCCCCCCHHHHHHHHHHHHHhC----Cchhhhchh------------cCCCChhHHH
Q 044977           67 --------------L----NSD-FKKGGWSPEEDMLLCEAQKIFG----NRWTEIAKV------------VSGRTDNAVK  111 (479)
Q Consensus        67 --------------L----~P~-IkKg~WT~EEDelLLelvkk~G----nrWskIAk~------------LPGRTdnqcK  111 (479)
                                    |    .+. .+...||++||..||-++.+||    +.|.+|-..            +..||+.+|.
T Consensus       203 L~~Ki~~y~~P~~~L~i~y~~~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwF~kSRT~~EL~  282 (374)
T 2y9y_A          203 LRRKLSEYKNPFFDLKLKHPPSSNNKRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEIRDCPLFELDFYFRSRTPVELA  282 (374)
T ss_dssp             HHHHHTTCSSHHHHCCCSSCCCCSSCCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHCSGGGSCHHHHTCCHHHHH
T ss_pred             HHHHHHHccCCHHHceeccCCCCCCCCccCHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCcchhhhHHHhcCCHHHHH
Confidence                          1    111 1345799999999999999998    579999432            4679999999


Q ss_pred             HHHHHHhhh
Q 044977          112 NRFSTLCKK  120 (479)
Q Consensus       112 NRW~slLkK  120 (479)
                      .|..++++-
T Consensus       283 rRc~tLi~~  291 (374)
T 2y9y_A          283 RRGNTLLQC  291 (374)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999999874

>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A

Probab=96.88  E-value=0.0012  Score=55.69  Aligned_cols=46  Identities=30%  Similarity=0.589  Sum_probs=41.2

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCChhhHhhhcCCCChhhhhhhhhh
Q 044977           19 RHIVTWTQQEDDILREQISIHGTENWSIIASKFKDKTTRQCRRRWYT   65 (479)
Q Consensus        19 rkrg~WT~EEDekL~elV~k~G~~nWs~IAk~lpgRT~kQCReRW~n   65 (479)
                      .....||+||.+++.+.+..||. +|..||..+++|+..+|.+.|+.
T Consensus        41 ~~~~~WT~eE~~~F~~~~~~~gK-~F~~Ia~~l~~Kt~~~cV~~YY~   86 (94)
T 4a69_C           41 QVMNMWSEQEKETFREKFMQHPK-NFGLIASFLERKTVAECVLYYYL   86 (94)
T ss_dssp             HHTCCCCHHHHHHHHHHHHHSTT-CHHHHHHTCTTCCHHHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHHcCC-CHHHHHHHcCCCCHHHHHHHHhc
Confidence            34678999999999999999994 89999999999999999887653

>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}

Probab=96.87  E-value=0.001  Score=56.47  Aligned_cols=47  Identities=21%  Similarity=0.445  Sum_probs=42.3

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCChhhHhhhc-----CCCChhhhhhhhhhcc
Q 044977           20 HIVTWTQQEDDILREQISIHGTENWSIIASKF-----KDKTTRQCRRRWYTYL   67 (479)
Q Consensus        20 krg~WT~EEDekL~elV~k~G~~nWs~IAk~l-----pgRT~kQCReRW~n~L   67 (479)
                      ...+||.||+..|.+++++|+. +|..|+..+     ++|+..+++.||..+.
T Consensus        29 ~~~~WTkEETd~Lf~L~~~fdl-RW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~   80 (93)
T 3hm5_A           29 HDDAWTKAETDHLFDLSRRFDL-RFVVIHDRYDHQQFKKRSVEDLKERYYHIC   80 (93)
T ss_dssp             CBTTBCHHHHHHHHHHHHHTTT-CHHHHHHHSCTTTSCCCCHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHhCC-CeeeehhhhccCCCCCCCHHHHHHHHHHHH
Confidence            3479999999999999999995 899999999     4799999999998754

>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3

Probab=96.80  E-value=0.002  Score=51.50  Aligned_cols=46  Identities=15%  Similarity=0.276  Sum_probs=41.2

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCChhhHhh-hcCCCChhhhhhhhhh
Q 044977           19 RHIVTWTQQEDDILREQISIHGTENWSIIAS-KFKDKTTRQCRRRWYT   65 (479)
Q Consensus        19 rkrg~WT~EEDekL~elV~k~G~~nWs~IAk-~lpgRT~kQCReRW~n   65 (479)
                      .....||+||-.+..+++..||. +|..|++ .+++|+..+|..-|+.
T Consensus         6 ~~~~~WT~eE~~~Fe~~l~~yGK-df~~I~~~~v~~Kt~~~~v~fYY~   52 (70)
T 2crg_A            6 SGMEEWSASEACLFEEALEKYGK-DFNDIRQDFLPWKSLTSIIEYYYM   52 (70)
T ss_dssp             CSSCCCCHHHHHHHHHHHHHTCS-CHHHHHHTTCSSSCHHHHHHHHHH
T ss_pred             cCCCCCCHHHHHHHHHHHHHhCc-cHHHHHHHHcCCCCHHHHHHHHHh
Confidence            45668999999999999999996 8999999 5999999999888764

>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*

Probab=96.77  E-value=0.001  Score=54.20  Aligned_cols=49  Identities=16%  Similarity=0.394  Sum_probs=41.0

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCC----------chhhhchhcC----CCChhHHHHHHHHHhhh
Q 044977           72 KKGGWSPEEDMLLCEAQKIFGN----------RWTEIAKVVS----GRTDNAVKNRFSTLCKK  120 (479)
Q Consensus        72 kKg~WT~EEDelLLelvkk~Gn----------rWskIAk~LP----GRTdnqcKNRW~slLkK  120 (479)
                      +...||.+|-.+||+++..+..          .|..||..|.    .||+.||+++|.++.+.
T Consensus         3 R~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~k~   65 (86)
T 2ebi_A            3 RAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLLKE   65 (86)
T ss_dssp             CSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence            3568999999999999976431          4999999873    69999999999998764

>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3

Probab=96.13  E-value=0.0079  Score=51.22  Aligned_cols=51  Identities=20%  Similarity=0.455  Sum_probs=44.4

Q ss_pred             cccCCCCCCCCHHHHHHHHHHHHHhCC--CChhhHhhhcCCCChhhhhhhhhh
Q 044977           15 KKKERHIVTWTQQEDDILREQISIHGT--ENWSIIASKFKDKTTRQCRRRWYT   65 (479)
Q Consensus        15 kKkkrkrg~WT~EEDekL~elV~k~G~--~nWs~IAk~lpgRT~kQCReRW~n   65 (479)
                      .++-.+-.-||.|||..++...++.|.  ..|..||+.+++|+..|+++|++.
T Consensus        27 ~s~Ge~VvlWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~Nks~nqV~~RFq~   79 (95)
T 1ug2_A           27 SSTGEKVVLWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRE   79 (95)
T ss_dssp             CCCCCCCSSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHH
T ss_pred             cCCCCEEEEeccccCHHHHHHHHhcCCChhHHHHHHHHHccCCHHHHHHHHHH
Confidence            344456678999999999999999975  369999999999999999999876

>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}

Probab=93.79  E-value=0.0051  Score=49.85  Aligned_cols=50  Identities=24%  Similarity=0.518  Sum_probs=42.6

Q ss_pred             cCCCCCCCCHHHHHHHHHHHHHhCC--CChhhHhhhcCCCChhhhhhhhhhcc
Q 044977           17 KERHIVTWTQQEDDILREQISIHGT--ENWSIIASKFKDKTTRQCRRRWYTYL   67 (479)
Q Consensus        17 kkrkrg~WT~EEDekL~elV~k~G~--~nWs~IAk~lpgRT~kQCReRW~n~L   67 (479)
                      +.-.-..||.|||..|+..+++.|.  ..|..||..+ +|++.|+..|+...+
T Consensus        10 ~ge~vvlWTReeDR~IL~~cq~~G~s~~tfa~iA~~L-nks~~QV~~RF~~Lm   61 (70)
T 2lr8_A           10 KGEIIILWTRNDDRVILLECQKRGPSSKTFAYLAAKL-DKNPNQVSERFQQLM   61 (70)
Confidence            3345568999999999999999886  3699999999 899999999987654

>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*

Probab=92.90  E-value=0.12  Score=43.99  Aligned_cols=46  Identities=17%  Similarity=0.392  Sum_probs=40.7

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCChhhHhhhcC-----CCChhhhhhhhhhcc
Q 044977           21 IVTWTQQEDDILREQISIHGTENWSIIASKFK-----DKTTRQCRRRWYTYL   67 (479)
Q Consensus        21 rg~WT~EEDekL~elV~k~G~~nWs~IAk~lp-----gRT~kQCReRW~n~L   67 (479)
                      -..||.||...|.++++++.- +|--|+....     .|+..+.++||+.+.
T Consensus        30 ~~~WT~eETd~LfdLc~~fdl-Rw~vI~DRy~~~~~~~RtvEdLK~RYY~V~   80 (93)
T 4iej_A           30 DDAWTKAETDHLFDLSRRFDL-RFVVIHDRYDHQQFKKRSVEDLKERYYHIC   80 (93)
T ss_dssp             BTTBCHHHHHHHHHHHHHTTT-CHHHHHHHCCTTTSCCCCHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHcCC-CeEEEeeccccCCCCCCCHHHHHHHHHHHH
Confidence            357999999999999999995 8999999874     689999999998754

>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11

Probab=92.66  E-value=0.28  Score=39.02  Aligned_cols=49  Identities=14%  Similarity=0.118  Sum_probs=41.5

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCCc---hhhhchhc--CCCChhHHHHHHHHHhh
Q 044977           71 FKKGGWSPEEDMLLCEAQKIFGNR---WTEIAKVV--SGRTDNAVKNRFSTLCK  119 (479)
Q Consensus        71 IkKg~WT~EEDelLLelvkk~Gnr---WskIAk~L--PGRTdnqcKNRW~slLk  119 (479)
                      ..+-.||+|.....++++..+|..   +..|-+.|  +|.|..+|+.|.+.+.-
T Consensus         5 k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKYR~   58 (64)
T 1irz_A            5 KPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFRV   58 (64)
T ss_dssp             CSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHHHH
T ss_pred             CCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHHHH
Confidence            346679999999999999999965   67898876  78999999999876543

>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11

Probab=92.02  E-value=0.26  Score=39.21  Aligned_cols=49  Identities=14%  Similarity=0.209  Sum_probs=41.0

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhCCCC--hhhHhhhcC--CCChhhhhhhhhhc
Q 044977           18 ERHIVTWTQQEDDILREQISIHGTEN--WSIIASKFK--DKTTRQCRRRWYTY   66 (479)
Q Consensus        18 krkrg~WT~EEDekL~elV~k~G~~n--Ws~IAk~lp--gRT~kQCReRW~n~   66 (479)
                      ++.+..||+|.-+.++++|...|...  |..|.+.|+  +.|..++..+.+.|
T Consensus         4 ~k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKY   56 (64)
T 1irz_A            4 KKPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKF   56 (64)
T ss_dssp             CCSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHH
T ss_pred             CCCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHH
Confidence            56778999999999999999999542  889999887  67888888877665

>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A

Probab=91.48  E-value=0.23  Score=49.87  Aligned_cols=48  Identities=21%  Similarity=0.326  Sum_probs=42.7

Q ss_pred             CCCCCHHHHHHHHHHHHHhCC-chhhhchhcCCCChhHHHHHHHHHhhh
Q 044977           73 KGGWSPEEDMLLCEAQKIFGN-RWTEIAKVVSGRTDNAVKNRFSTLCKK  120 (479)
Q Consensus        73 Kg~WT~EEDelLLelvkk~Gn-rWskIAk~LPGRTdnqcKNRW~slLkK  120 (479)
                      -+.||..+...++.+..+||. .|..||..|+|+|..+|+.++.....+
T Consensus       110 F~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~~Kt~eEV~~Y~~vFw~r  158 (304)
T 1ofc_X          110 FTAWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIEYNAVFWER  158 (304)
T ss_dssp             CTTCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHHHHHHHHHH
T ss_pred             hcccCHHHHHHHHHHHHHhCHHHHHHHHHHhcCCCHHHHHHHHHHHHHh
Confidence            457999999999999999995 799999999999999998877766653

>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}

Probab=88.88  E-value=0.36  Score=44.48  Aligned_cols=49  Identities=18%  Similarity=0.253  Sum_probs=41.5

Q ss_pred             CCCCCCHHHHHHHHHHHHHhC---Cchhhhchh--cCCCChhHHHHHHHHHhhh
Q 044977           72 KKGGWSPEEDMLLCEAQKIFG---NRWTEIAKV--VSGRTDNAVKNRFSTLCKK  120 (479)
Q Consensus        72 kKg~WT~EEDelLLelvkk~G---nrWskIAk~--LPGRTdnqcKNRW~slLkK  120 (479)
                      ....||..|-..|+.++.+||   .+|..|+..  |.+||..+|+.++..++..
T Consensus         6 ~~~~~t~~E~r~fira~~kfG~~~~r~~~I~~da~L~~Ks~~~v~~y~~~f~~~   59 (211)
T 4b4c_A            6 NIKGFSDAEIRRFIKSYKKFGGPLERLDAIARDAELVDKSETDLRRLGELVHNG   59 (211)
T ss_dssp             --CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHHTTCTTSCHHHHHHHHHHHHHH
T ss_pred             cCCCCCHHHHHHHHHHHHHHCCchhHHHHHHHHhccCCCCHHHHHHHHHHHHHH
Confidence            456899999999999999999   589999875  7899999999988776654

>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A

Probab=88.59  E-value=0.28  Score=48.42  Aligned_cols=28  Identities=29%  Similarity=0.535  Sum_probs=26.4

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCChhhHhh
Q 044977           22 VTWTQQEDDILREQISIHGTENWSIIAS   49 (479)
Q Consensus        22 g~WT~EEDekL~elV~k~G~~nWs~IAk   49 (479)
                      ..|+.+||..|+..|.+||.|+|..|-.
T Consensus       169 c~W~~~dD~~LLvGIykyGyG~We~Ir~  196 (270)
T 2xb0_X          169 SNWTKEEDEKLLIGVFKYGYGSWTQIRD  196 (270)
T ss_dssp             SCCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             CCcChHHHHHHHHHHHHHcCCcHHHHhc
Confidence            4699999999999999999999999985

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	479
d1igna1	86	a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Ba	4e-15
d1igna1	86	a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Ba	2e-09
d1guua_	50	a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus	7e-14
d1guua_	50	a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus	1e-08
d1gvda_	52	a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus	2e-13
d1gvda_	52	a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus	1e-09
d2ckxa1	83	a.4.1.3 (A:578-660) Telomere binding protein TBP1	3e-12
d2cu7a1	65	a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sap	6e-12
d2cu7a1	65	a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sap	4e-09
d1gv2a2	47	a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mou	7e-12
d1gv2a2	47	a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mou	2e-08
d1xc5a1	68	a.4.1.3 (A:413-480) Nuclear receptor corepressor 2	3e-11
d1xc5a1	68	a.4.1.3 (A:413-480) Nuclear receptor corepressor 2	9e-11
d2iw5b1	65	a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Hu	4e-11
d2iw5b1	65	a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Hu	2e-09
d1x41a1	47	a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, T	1e-09
d1x41a1	47	a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, T	2e-05
d1ug2a_	95	a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mu	3e-09
d1ug2a_	95	a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mu	2e-07
d2cjja1	63	a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Anti	3e-09
d2cjja1	63	a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Anti	2e-08
d1w0ta_	52	a.4.1.4 (A:) DNA-binding domain of human telomeric	5e-09
d1w0ta_	52	a.4.1.4 (A:) DNA-binding domain of human telomeric	5e-08
d2cqra1	60	a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1	3e-08
d2cqra1	60	a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1	3e-08
d1w0ua_	55	a.4.1.4 (A:) Telomeric repeat binding factor 2, TR	1e-07
d1w0ua_	55	a.4.1.4 (A:) Telomeric repeat binding factor 2, TR	8e-07
d2crga1	57	a.4.1.3 (A:8-64) Metastasis associated protein MTA	4e-04
d2cqqa1	59	a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1	0.004

>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 86

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of rap1
domain: DNA-binding domain of rap1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 68.4 bits (167), Expect = 4e-15
 Identities = 11/72 (15%), Positives = 28/72 (38%), Gaps = 5/72 (6%)

Query: 23 TWTQQEDDILREQISIHGT-----ENWSIIASKFKDKTTRQCRRRWYTYLNSDFKKGGWS 77
          ++T +ED+ + + +  + T       +  I+    + T    R R+  YL+   +     
Sbjct: 3  SFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLEYVYEV 62

Query: 78 PEEDMLLCEAQK 89
           +   L+ +   
Sbjct: 63 DKFGKLVRDDDG 74

>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 86

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of rap1
domain: DNA-binding domain of rap1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 51.9 bits (124), Expect = 2e-09
 Identities = 16/77 (20%), Positives = 31/77 (40%), Gaps = 6/77 (7%)

Query: 73  KGGWSPEEDMLLCEAQKIFGNR------WTEIAKVVSGRTDNAVKNRFSTLCKKRAKYEA 126
           K  ++ EED  + +  +    R      + EI+  V   T N++++RF     KR +Y  
Sbjct: 1   KASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLEYVY 60

Query: 127 LAKENNNAYINPNNKRI 143
              +      + +   I
Sbjct: 61  EVDKFGKLVRDDDGNLI 77

>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 50

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 63.6 bits (155), Expect = 7e-14
 Identities = 17/47 (36%), Positives = 32/47 (68%)

Query: 24 WTQQEDDILREQISIHGTENWSIIASKFKDKTTRQCRRRWYTYLNSD 70
          WT++ED+ L++ +  +GT++W +IA+   ++T  QC+ RW   LN +
Sbjct: 4  WTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNPE 50

>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 50

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 49.0 bits (117), Expect = 1e-08
 Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 1/43 (2%)

Query: 73  KGGWSPEEDMLLCEAQKIFG-NRWTEIAKVVSGRTDNAVKNRF 114
           K  W+ EED  L +  +  G + W  IA  +  RTD   ++R+
Sbjct: 1   KTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRW 43

>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 52

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 62.8 bits (153), Expect = 2e-13
 Identities = 18/47 (38%), Positives = 30/47 (63%)

Query: 24 WTQQEDDILREQISIHGTENWSIIASKFKDKTTRQCRRRWYTYLNSD 70
          WT++ED  L + +  +G + WS+IA   K +  +QCR RW+ +LN +
Sbjct: 6  WTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPE 52

>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 52

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 51.6 bits (124), Expect = 1e-09
 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 1/44 (2%)

Query: 72  KKGGWSPEEDMLLCEAQKIFG-NRWTEIAKVVSGRTDNAVKNRF 114
            KG W+ EED  L +  + +G  RW+ IAK + GR     + R+
Sbjct: 2   IKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERW 45

>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 83

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Telomere binding protein TBP1
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

 Score = 60.1 bits (145), Expect = 3e-12
 Identities = 12/81 (14%), Positives = 30/81 (37%), Gaps = 10/81 (12%)

Query: 24 WTQQEDDILREQISIHGTENWSIIA----SKFKDKTTRQCRRRWYTYLNSDFK-----KG 74
          ++  E + L E +   GT  W  +          +T    + +W T +++        +G
Sbjct: 3  FSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRG 62

Query: 75 GWSPEEDML-LCEAQKIFGNR 94
             P++ +  +  A   +  +
Sbjct: 63 EPVPQDLLDRVLAAHAYWSQQ 83

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.8 bits (142), Expect = 6e-12
 Identities = 11/63 (17%), Positives = 24/63 (38%), Gaps = 1/63 (1%)

Query: 20 HIVTWTQQEDDILREQISIHGTENWSIIASKFKDKTTRQCRRRWYTYLNSDFKKGGWSPE 79
          + V WT +E ++  + ++      W+ I+     +T  Q +     Y  +  K G     
Sbjct: 1  YSVKWTIEEKELFEQGLAKF-GRRWTKISKLIGSRTVLQVKSYARQYFKNKVKCGLDKET 59

Query: 80 EDM 82
           + 
Sbjct: 60 PNQ 62

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.7 bits (121), Expect = 4e-09
 Identities = 17/48 (35%), Positives = 25/48 (52%)

Query: 76  WSPEEDMLLCEAQKIFGNRWTEIAKVVSGRTDNAVKNRFSTLCKKRAK 123
           W+ EE  L  +    FG RWT+I+K++  RT   VK+      K + K
Sbjct: 5   WTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVK 52

>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 47

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 57.9 bits (140), Expect = 7e-12
 Identities = 23/47 (48%), Positives = 34/47 (72%)

Query: 73  KGGWSPEEDMLLCEAQKIFGNRWTEIAKVVSGRTDNAVKNRFSTLCK 119
           K  W+ EED ++ +A K  GNRW EIAK++ GRTDNA+KN +++  +
Sbjct: 1   KTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMR 47

>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 47

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 48.3 bits (115), Expect = 2e-08
 Identities = 11/45 (24%), Positives = 21/45 (46%), Gaps = 1/45 (2%)

Query: 23 TWTQQEDDILREQISIHGTENWSIIASKFKDKTTRQCRRRWYTYL 67
          +WT++ED I+ +     G   W+ IA     +T    +  W + +
Sbjct: 3  SWTEEEDRIIYQAHKRLGN-RWAEIAKLLPGRTDNAIKNHWNSTM 46

>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 68

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Nuclear receptor corepressor 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.8 bits (137), Expect = 3e-11
 Identities = 10/54 (18%), Positives = 16/54 (29%), Gaps = 1/54 (1%)

Query: 72  KKGGWSPEEDMLLCEAQKIFGNRWTEIAKVVSGRTDNAVKNRFSTLCKKRAKYE 125
               WS +E     E        +  IA  +  +T       +    KK   Y+
Sbjct: 16  VMNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYYLT-KKNENYK 68

>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 68

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Nuclear receptor corepressor 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.3 bits (133), Expect = 9e-11
 Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 1/58 (1%)

Query: 16 KKERHIVTWTQQEDDILREQISIHGTENWSIIASKFKDKTTRQCRRRWYTYLNSDFKK 73
          K  + +  W++QE +  RE+   H   N+ +IAS  + KT  +C   +Y    ++  K
Sbjct: 12 KDRQVMNMWSEQEKETFREKFMQHPK-NFGLIASFLERKTVAECVLYYYLTKKNENYK 68

>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: REST corepressor 1, CoREST
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.4 bits (136), Expect = 4e-11
 Identities = 14/59 (23%), Positives = 29/59 (49%), Gaps = 1/59 (1%)

Query: 72  KKGGWSPEEDMLLCEAQKIFGNRWTEIAKVVSGRTDNAVKNRFSTLCKKRAKYEALAKE 130
               W+ EE +L  +A + +G  +  I+ V+  ++   VKN F    ++R   + + +E
Sbjct: 4   CNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNY-RRRFNIDEVLQE 61

>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: REST corepressor 1, CoREST
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.4 bits (123), Expect = 2e-09
 Identities = 13/59 (22%), Positives = 24/59 (40%), Gaps = 4/59 (6%)

Query: 24 WTQQEDDILREQISIHGTENWSIIASKFKDKTTRQCRRRWYTY---LNSDFKKGGWSPE 79
          WT +E  +  + I  +G  ++  I+    +K+  Q +  +  Y    N D     W  E
Sbjct: 8  WTTEEQLLAVQAIRKYGR-DFQAISDVIGNKSVVQVKNFFVNYRRRFNIDEVLQEWEAE 65

>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]} Length = 47

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Transcriptional adaptor 2-like, TADA2L, isoform b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.5 bits (123), Expect = 1e-09
 Identities = 14/43 (32%), Positives = 22/43 (51%)

Query: 24 WTQQEDDILREQISIHGTENWSIIASKFKDKTTRQCRRRWYTY 66
          WT QE+  L E +   G  NW  +A++   KT  +C + +  Y
Sbjct: 4  WTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKY 46

>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]} Length = 47

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Transcriptional adaptor 2-like, TADA2L, isoform b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.5 bits (92), Expect = 2e-05
 Identities = 10/41 (24%), Positives = 19/41 (46%), Gaps = 1/41 (2%)

Query: 75  GWSPEEDMLLCEAQKIFG-NRWTEIAKVVSGRTDNAVKNRF 114
            W+ +E+M L EA    G   W ++A  +  +T    +  +
Sbjct: 3   SWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHY 43

>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]} Length = 95

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: 2610100b20rik gene product
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 51.8 bits (124), Expect = 3e-09
 Identities = 12/75 (16%), Positives = 28/75 (37%), Gaps = 3/75 (4%)

Query: 48  ASKFKDKTTRQCRRRWYTYLNSDFKKGGWSPEEDMLLCEAQKIFGNR---WTEIAKVVSG 104
           A      +            ++  K   W+ E D ++    +  G +   ++ I++ +  
Sbjct: 8   AGALPKASEATVCANNSKVSSTGEKVVLWTREADRVILTMCQEQGAQPHTFSVISQQLGN 67

Query: 105 RTDNAVKNRFSTLCK 119
           +T   V +RF  L +
Sbjct: 68  KTPVEVSHRFRELMQ 82

>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]} Length = 95

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: 2610100b20rik gene product
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 46.4 bits (110), Expect = 2e-07
 Identities = 11/57 (19%), Positives = 25/57 (43%), Gaps = 2/57 (3%)

Query: 9  GSNEESKKKERHIVTWTQQEDDILREQISIHGT--ENWSIIASKFKDKTTRQCRRRW 63
           +N +       +V WT++ D ++       G     +S+I+ +  +KT  +   R+
Sbjct: 21 ANNSKVSSTGEKVVLWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRF 77

>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]} Length = 63

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Radialis
species: Garden snapdragon (Antirrhinum majus) [TaxId: 4151]

 Score = 50.7 bits (121), Expect = 3e-09
 Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 4/55 (7%)

Query: 76  WSPEEDMLLCEAQKIFG----NRWTEIAKVVSGRTDNAVKNRFSTLCKKRAKYEA 126
           WS +E+     A  ++     +RW  +A+ V GRT   VK  +  L +     E+
Sbjct: 4   WSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDIKYIES 58

>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]} Length = 63

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Radialis
species: Garden snapdragon (Antirrhinum majus) [TaxId: 4151]

 Score = 48.8 bits (116), Expect = 2e-08
 Identities = 8/53 (15%), Positives = 24/53 (45%), Gaps = 4/53 (7%)

Query: 24 WTQQEDDILREQISIHGTEN---WSIIASKFKDKTTRQCRRRWYTYLNSDFKK 73
          W+ +E+      ++++  +    W+ +A   + +T  + ++ +   L  D K 
Sbjct: 4  WSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYE-ILVEDIKY 55

>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]} Length = 52

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: DNA-binding domain of human telomeric protein, hTRF1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.9 bits (119), Expect = 5e-09
 Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 2/47 (4%)

Query: 23 TWTQQEDDILREQISIHGTENWSIIASK--FKDKTTRQCRRRWYTYL 67
           W  +ED  LR  +  +G  NWS I     F ++T+   + RW T  
Sbjct: 4  AWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMK 50

>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]} Length = 52

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: DNA-binding domain of human telomeric protein, hTRF1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.2 bits (112), Expect = 5e-08
 Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 3/51 (5%)

Query: 72  KKGGWSPEEDMLLCEAQKIFGN-RWTEIAK--VVSGRTDNAVKNRFSTLCK 119
           K+  W  EED  L    + +G   W++I      + RT   +K+R+ T+ K
Sbjct: 1   KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK 51

>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 60

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.1 bits (114), Expect = 3e-08
 Identities = 12/58 (20%), Positives = 22/58 (37%), Gaps = 4/58 (6%)

Query: 9  GSNEESKKKERHIVTWTQQEDDILREQISIHGT---ENWSIIASKFKDKTTRQCRRRW 63
          GS  + + +      WTQ +  +L   +  +     + W  IA     K+   C  R+
Sbjct: 1  GSLRKERARSAE-EPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARY 57

>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 60

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.7 bits (113), Expect = 3e-08
 Identities = 10/54 (18%), Positives = 22/54 (40%), Gaps = 4/54 (7%)

Query: 68  NSDFKKGGWSPEEDMLLCEAQKIFG----NRWTEIAKVVSGRTDNAVKNRFSTL 117
            +   +  W+  +  LL  A + +     + W +IA+ V  ++      R+  L
Sbjct: 7   RARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLL 60

>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]} Length = 55

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: Telomeric repeat binding factor 2, TRF2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.7 bits (108), Expect = 1e-07
 Identities = 12/47 (25%), Positives = 23/47 (48%), Gaps = 2/47 (4%)

Query: 23 TWTQQEDDILREQISIHGTENWSIIASK--FKDKTTRQCRRRWYTYL 67
           WT +E + ++  +  +G  NW+ I+    F ++T    + RW T  
Sbjct: 4  KWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMK 50

>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]} Length = 55

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: Telomeric repeat binding factor 2, TRF2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.8 bits (103), Expect = 8e-07
 Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 3/53 (5%)

Query: 72  KKGGWSPEEDMLLCEAQKIFG-NRWTEIAKVV--SGRTDNAVKNRFSTLCKKR 121
           KK  W+ EE   +    + +G   W  I+K      RT   +K+R+ T+ +  
Sbjct: 1   KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLG 53

>d2crga1 a.4.1.3 (A:8-64) Metastasis associated protein MTA3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 57

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Metastasis associated protein MTA3
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 36.3 bits (84), Expect = 4e-04
 Identities = 9/49 (18%), Positives = 21/49 (42%), Gaps = 2/49 (4%)

Query: 23 TWTQQEDDILREQISIHGTENWSIIASKF-KDKTTRQCRRRWYTYLNSD 70
           W+  E  +  E +  +G ++++ I   F   K+       +Y +  +D
Sbjct: 3  EWSASEACLFEEALEKYG-KDFNDIRQDFLPWKSLTSIIEYYYMWKTTD 50

>d2cqqa1 a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 59

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.6 bits (77), Expect = 0.004
 Identities = 12/46 (26%), Positives = 19/46 (41%), Gaps = 5/46 (10%)

Query: 76  WSPEEDMLLCEAQKIFG----NRWTEIAKVVSGRTDNAVKNRFSTL 117
           W+ E+   L  +   F      RW +IA  + GR+   V  +   L
Sbjct: 4   WTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQL 48

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	479
d1igna1	86	DNA-binding domain of rap1 {Baker's yeast (Sacchar	99.71
d1gvda_	52	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.67
d1guua_	50	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.64
d1gv2a2	47	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.61
d1igna1	86	DNA-binding domain of rap1 {Baker's yeast (Sacchar	99.58
d2ckxa1	83	Telomere binding protein TBP1 {Tobacco (Nicotiana	99.57
d1gvda_	52	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.57
d1w0ua_	55	Telomeric repeat binding factor 2, TRF2 {Human (Ho	99.49
d1guua_	50	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.48
d1w0ta_	52	DNA-binding domain of human telomeric protein, hTR	99.43
d1x41a1	47	Transcriptional adaptor 2-like, TADA2L, isoform b	99.42
d1gv2a2	47	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.4
d1w0ta_	52	DNA-binding domain of human telomeric protein, hTR	99.37
d1w0ua_	55	Telomeric repeat binding factor 2, TRF2 {Human (Ho	99.36
d2cu7a1	65	MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 960	99.36
d2cu7a1	65	MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 960	99.29
d1x41a1	47	Transcriptional adaptor 2-like, TADA2L, isoform b	99.28
d2cqra1	60	DnaJ homolog subfamily C member 1 {Human (Homo sap	99.27
d2cqra1	60	DnaJ homolog subfamily C member 1 {Human (Homo sap	99.26
d2cjja1	63	Radialis {Garden snapdragon (Antirrhinum majus) [T	99.16
d1ug2a_	95	2610100b20rik gene product {Mouse (Mus musculus) [	99.15
d2cjja1	63	Radialis {Garden snapdragon (Antirrhinum majus) [T	99.14
d2ckxa1	83	Telomere binding protein TBP1 {Tobacco (Nicotiana	99.11
d2iw5b1	65	REST corepressor 1, CoREST {Human (Homo sapiens) [	99.06
d1xc5a1	68	Nuclear receptor corepressor 2 {Human (Homo sapien	99.02
d2iw5b1	65	REST corepressor 1, CoREST {Human (Homo sapiens) [	98.9
d1xc5a1	68	Nuclear receptor corepressor 2 {Human (Homo sapien	98.87
d1ug2a_	95	2610100b20rik gene product {Mouse (Mus musculus) [	98.56
d2cqqa1	59	DnaJ homolog subfamily C member 1 {Human (Homo sap	98.04
d2crga1	57	Metastasis associated protein MTA3 {Mouse (Mus mus	97.86
d2cqqa1	59	DnaJ homolog subfamily C member 1 {Human (Homo sap	97.7
d2crga1	57	Metastasis associated protein MTA3 {Mouse (Mus mus	97.47
d1irza_	64	Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId	96.51
d1fexa_	59	Rap1 {Human (Homo sapiens) [TaxId: 9606]}	96.5
d1irza_	64	Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId	96.36
d1fexa_	59	Rap1 {Human (Homo sapiens) [TaxId: 9606]}	96.27
d1x58a1	49	Hypothetical protein 4930532d21rik {Mouse (Mus mus	96.0
d1wgxa_	73	Hypothetical protein C14orf106 (KIAA1903) {Human (	94.69
d1x58a1	49	Hypothetical protein 4930532d21rik {Mouse (Mus mus	90.67
d1wgxa_	73	Hypothetical protein C14orf106 (KIAA1903) {Human (	89.71
d1ofcx2	128	SLIDE domain of the nucleosome remodeling ATPase I	87.82
d1ofcx1	52	SANT domain of the nucleosome remodeling ATPase IS	86.8
d3bvua1	111	Golgi alpha-mannosidase II {Fruit fly (Drosophila	80.72

>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of rap1
domain: DNA-binding domain of rap1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.71  E-value=2.8e-19  Score=147.31  Aligned_cols=70  Identities=16%  Similarity=0.198  Sum_probs=65.0

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCC-----ChhhHhhhcCCCChhhhhhhhhhccCCCCCCCCCCHHHHHHHHHHHHH
Q 044977           21 IVTWTQQEDDILREQISIHGTE-----NWSIIASKFKDKTTRQCRRRWYTYLNSDFKKGGWSPEEDMLLCEAQKI   90 (479)
Q Consensus        21 rg~WT~EEDekL~elV~k~G~~-----nWs~IAk~lpgRT~kQCReRW~n~L~P~IkKg~WT~EEDelLLelvkk   90 (479)
                      |++||+|||++|+++|..||..     +|..||..|||||++|||+||.+||+|.+++++||++||.+|+..+..
T Consensus         1 k~~WT~eED~~L~~~v~~~g~~~~~~~~W~~IA~~lpgRt~~qcr~Rw~~~L~p~l~~~~~t~~ed~ll~d~~~~   75 (86)
T d1igna1           1 KASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLEYVYEVDKFGKLVRDDDGN   75 (86)
T ss_dssp             CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGGGCCCEECBCTTSCBCBCTTSC
T ss_pred             CCCCCHHHHHHHHHHHHHhCcCcCCccCHHHHHHHcCCCCHHHHHHHHHHHcCccccCCCCCCchhHHHHHHhhc
Confidence            5789999999999999999864     399999999999999999999999999999999999999998876643

>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.67  E-value=2.4e-17  Score=123.80  Aligned_cols=51  Identities=35%  Similarity=0.709  Sum_probs=49.3

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCChhhHhhhcCCCChhhhhhhhhhccCCC
Q 044977           20 HIVTWTQQEDDILREQISIHGTENWSIIASKFKDKTTRQCRRRWYTYLNSD   70 (479)
Q Consensus        20 krg~WT~EEDekL~elV~k~G~~nWs~IAk~lpgRT~kQCReRW~n~L~P~   70 (479)
                      .+|+||+|||++|+++|..||.++|..||+.|++||+.||+.||.+||+|+
T Consensus         2 ~rg~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qc~~Rw~~~L~P~   52 (52)
T d1gvda_           2 IKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPE   52 (52)
T ss_dssp             CCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTSCC
T ss_pred             CCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHhhCCCC
Confidence            589999999999999999999999999999999999999999999999995

>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.64  E-value=5.8e-17  Score=120.42  Aligned_cols=50  Identities=34%  Similarity=0.815  Sum_probs=48.1

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCChhhHhhhcCCCChhhhhhhhhhccCCC
Q 044977           21 IVTWTQQEDDILREQISIHGTENWSIIASKFKDKTTRQCRRRWYTYLNSD   70 (479)
Q Consensus        21 rg~WT~EEDekL~elV~k~G~~nWs~IAk~lpgRT~kQCReRW~n~L~P~   70 (479)
                      |++||+|||++|+++|.+||.++|..||..|++|++.||++||.+||+|+
T Consensus         1 k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P~   50 (50)
T d1guua_           1 KTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNPE   50 (50)
T ss_dssp             CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHHSCC
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHhhCCCC
Confidence            57899999999999999999999999999999999999999999999985

>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.61  E-value=2.1e-16  Score=116.58  Aligned_cols=47  Identities=49%  Similarity=0.922  Sum_probs=45.0

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCchhhhchhcCCCChhHHHHHHHHHhh
Q 044977           73 KGGWSPEEDMLLCEAQKIFGNRWTEIAKVVSGRTDNAVKNRFSTLCK  119 (479)
Q Consensus        73 Kg~WT~EEDelLLelvkk~GnrWskIAk~LPGRTdnqcKNRW~slLk  119 (479)
                      |++||+|||.+|+++|.+||++|+.||.+|||||+++||+||++++|
T Consensus         1 K~~WT~eED~~L~~~v~~~G~~W~~Ia~~~~gRt~~~~knr~~~~lr   47 (47)
T d1gv2a2           1 KTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMR   47 (47)
T ss_dssp             CCCCCHHHHHHHHHHHHHHSSCHHHHHTTCTTCCHHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHHhhHHHHHHhHcCCCCHHHHHHHHHHHcC
Confidence            57999999999999999999999999999999999999999998874

>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of rap1
domain: DNA-binding domain of rap1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.58  E-value=4e-16  Score=128.29  Aligned_cols=70  Identities=21%  Similarity=0.347  Sum_probs=64.9

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCc------hhhhchhcCCCChhHHHHHHHHHhhhhhhhhhhhhhhcccccCCCCcc
Q 044977           73 KGGWSPEEDMLLCEAQKIFGNR------WTEIAKVVSGRTDNAVKNRFSTLCKKRAKYEALAKENNNAYINPNNKR  142 (479)
Q Consensus        73 Kg~WT~EEDelLLelvkk~Gnr------WskIAk~LPGRTdnqcKNRW~slLkKr~K~~~wtkEEd~~lins~~Kr  142 (479)
                      |+.||+|||++|+++|.+||.+      |..||++|||||++|||+||+++|.+..++..|+.+++..+++...+.
T Consensus         1 k~~WT~eED~~L~~~v~~~g~~~~~~~~W~~IA~~lpgRt~~qcr~Rw~~~L~p~l~~~~~t~~ed~ll~d~~~~l   76 (86)
T d1igna1           1 KASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLEYVYEVDKFGKLVRDDDGNL   76 (86)
T ss_dssp             CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGGGCCCEECBCTTSCBCBCTTSCB
T ss_pred             CCCCCHHHHHHHHHHHHHhCcCcCCccCHHHHHHHcCCCCHHHHHHHHHHHcCccccCCCCCCchhHHHHHHhhcc
Confidence            5799999999999999999975      999999999999999999999999999999999999998888766543

>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Telomere binding protein TBP1
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=99.57  E-value=7.4e-16  Score=125.20  Aligned_cols=73  Identities=18%  Similarity=0.365  Sum_probs=61.1

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCChhhHhhh----cCCCChhhhhhhhhhcc-----CCCCCCCCCCHHHHHHHHHHHHHhC
Q 044977           22 VTWTQQEDDILREQISIHGTENWSIIASK----FKDKTTRQCRRRWYTYL-----NSDFKKGGWSPEEDMLLCEAQKIFG   92 (479)
Q Consensus        22 g~WT~EEDekL~elV~k~G~~nWs~IAk~----lpgRT~kQCReRW~n~L-----~P~IkKg~WT~EEDelLLelvkk~G   92 (479)
                      .+||+|||++|+++|.+||.++|..|++.    +++|++.||++||.|+|     +|..+++.|+++|   |+..+..++
T Consensus         1 r~WT~eEd~~L~~~V~~~G~~~W~~I~~~~~~~~~~Rt~~qck~RWrn~l~~~~~~~~~~~~~~~p~e---ll~~v~~~~   77 (83)
T d2ckxa1           1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQD---LLDRVLAAH   77 (83)
T ss_dssp             CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHHSCGGGCCSSCCCHH---HHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHCcccHHHHHHHHHhhccCCCHHHHHHHHHHHhhhhccCcccccCCCCCHH---HHHHHHHHH
Confidence            38999999999999999999999999986    57899999999999988     4677889999877   444444455


Q ss_pred             Cchhh
Q 044977           93 NRWTE   97 (479)
Q Consensus        93 nrWsk   97 (479)
                      .+|++
T Consensus        78 ~~wsq   82 (83)
T d2ckxa1          78 AYWSQ   82 (83)
T ss_dssp             HHHHH
T ss_pred             HHHhc
Confidence            56653

>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.57  E-value=8.2e-16  Score=115.32  Aligned_cols=50  Identities=32%  Similarity=0.624  Sum_probs=47.2

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhC-CchhhhchhcCCCChhHHHHHHHHHhhh
Q 044977           71 FKKGGWSPEEDMLLCEAQKIFG-NRWTEIAKVVSGRTDNAVKNRFSTLCKK  120 (479)
Q Consensus        71 IkKg~WT~EEDelLLelvkk~G-nrWskIAk~LPGRTdnqcKNRW~slLkK  120 (479)
                      +.||+||+|||++|+++|.+|| ++|..||+.|+|||+.||++||+++|++
T Consensus         1 l~rg~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qc~~Rw~~~L~P   51 (52)
T d1gvda_           1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNP   51 (52)
T ss_dssp             CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTSC
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHhhCCC
Confidence            4689999999999999999999 6899999999999999999999998875

>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: Telomeric repeat binding factor 2, TRF2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=9e-15  Score=110.51  Aligned_cols=53  Identities=23%  Similarity=0.511  Sum_probs=48.6

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCChhhHhhh--cCCCChhhhhhhhhhccCCCCC
Q 044977           20 HIVTWTQQEDDILREQISIHGTENWSIIASK--FKDKTTRQCRRRWYTYLNSDFK   72 (479)
Q Consensus        20 krg~WT~EEDekL~elV~k~G~~nWs~IAk~--lpgRT~kQCReRW~n~L~P~Ik   72 (479)
                      ++++||+|||++|+++|.+||.++|..||+.  |++|++.||++||.++++|.++
T Consensus         1 Kr~~WT~eEd~~L~~~V~~~G~~~W~~I~~~~~~~~Rt~~q~k~Rwrn~~k~~~N   55 (55)
T d1w0ua_           1 KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGMN   55 (55)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTTCC
T ss_pred             CCCCCCHHHHHHHHHHHHHhCCChHHHHHhhcCCCCcCHHHHHHHHHHHhcCCCC
Confidence            4679999999999999999999999999998  5599999999999999998764

>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.48  E-value=1.5e-14  Score=107.32  Aligned_cols=48  Identities=29%  Similarity=0.491  Sum_probs=45.4

Q ss_pred             CCCCCHHHHHHHHHHHHHhC-CchhhhchhcCCCChhHHHHHHHHHhhh
Q 044977           73 KGGWSPEEDMLLCEAQKIFG-NRWTEIAKVVSGRTDNAVKNRFSTLCKK  120 (479)
Q Consensus        73 Kg~WT~EEDelLLelvkk~G-nrWskIAk~LPGRTdnqcKNRW~slLkK  120 (479)
                      |+.||++||++|+++|.+|| ++|..||..|||||+.||++||+++|.+
T Consensus         1 k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P   49 (50)
T d1guua_           1 KTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNP   49 (50)
T ss_dssp             CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHHSC
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHhhCCC
Confidence            57899999999999999999 5899999999999999999999999875

>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: DNA-binding domain of human telomeric protein, hTRF1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=5.5e-14  Score=105.14  Aligned_cols=49  Identities=31%  Similarity=0.545  Sum_probs=44.8

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCChhhHhhhcC--CCChhhhhhhhhhccC
Q 044977           20 HIVTWTQQEDDILREQISIHGTENWSIIASKFK--DKTTRQCRRRWYTYLN   68 (479)
Q Consensus        20 krg~WT~EEDekL~elV~k~G~~nWs~IAk~lp--gRT~kQCReRW~n~L~   68 (479)
                      ++++||+|||+.|+++|.+||.++|..||+.++  +|++.||++||.++.+
T Consensus         1 kr~~WT~eED~~L~~~v~~~G~~~W~~I~~~~~~~~Rt~~q~r~Rw~nl~K   51 (52)
T d1w0ta_           1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK   51 (52)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHT
T ss_pred             CCCCCCHHHHHHHHHHHHHHCCCCHHHHHhhcCCCCCCHHHHHHHHHHHHC
Confidence            467999999999999999999999999999855  8999999999998753

>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Transcriptional adaptor 2-like, TADA2L, isoform b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=5e-14  Score=103.49  Aligned_cols=45  Identities=31%  Similarity=0.642  Sum_probs=43.1

Q ss_pred             CCCHHHHHHHHHHHHHhCCCChhhHhhhcCCCChhhhhhhhhhcc
Q 044977           23 TWTQQEDDILREQISIHGTENWSIIASKFKDKTTRQCRRRWYTYL   67 (479)
Q Consensus        23 ~WT~EEDekL~elV~k~G~~nWs~IAk~lpgRT~kQCReRW~n~L   67 (479)
                      .||+|||++|+++|+.||.++|..||++|++||+.|||.||.+|.
T Consensus         3 ~Wt~eEd~~L~~~v~~~G~~nW~~Ia~~~~~Rt~~Qcr~r~~~~f   47 (47)
T d1x41a1           3 SWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKYF   47 (47)
T ss_dssp             SSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHHHHHCCccHHHHHHHcCCCCHHHHHHHHHHhC
Confidence            599999999999999999999999999999999999999999873

>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.40  E-value=1.1e-13  Score=101.70  Aligned_cols=47  Identities=23%  Similarity=0.545  Sum_probs=44.4

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCChhhHhhhcCCCChhhhhhhhhhccC
Q 044977           21 IVTWTQQEDDILREQISIHGTENWSIIASKFKDKTTRQCRRRWYTYLN   68 (479)
Q Consensus        21 rg~WT~EEDekL~elV~k~G~~nWs~IAk~lpgRT~kQCReRW~n~L~   68 (479)
                      +.+||+|||++|+++|..||. +|+.||.+||+||+.||+.||.++|+
T Consensus         1 K~~WT~eED~~L~~~v~~~G~-~W~~Ia~~~~gRt~~~~knr~~~~lr   47 (47)
T d1gv2a2           1 KTSWTEEEDRIIYQAHKRLGN-RWAEIAKLLPGRTDNAIKNHWNSTMR   47 (47)
T ss_dssp             CCCCCHHHHHHHHHHHHHHSS-CHHHHHTTCTTCCHHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHHhh-HHHHHHhHcCCCCHHHHHHHHHHHcC
Confidence            468999999999999999996 89999999999999999999999874

>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: DNA-binding domain of human telomeric protein, hTRF1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=2.3e-13  Score=101.69  Aligned_cols=48  Identities=31%  Similarity=0.529  Sum_probs=43.8

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCC-chhhhchhc--CCCChhHHHHHHHHHhh
Q 044977           72 KKGGWSPEEDMLLCEAQKIFGN-RWTEIAKVV--SGRTDNAVKNRFSTLCK  119 (479)
Q Consensus        72 kKg~WT~EEDelLLelvkk~Gn-rWskIAk~L--PGRTdnqcKNRW~slLk  119 (479)
                      ++++||+|||+.|+++|.+||. +|+.||..+  .|||+.||++||+++.+
T Consensus         1 kr~~WT~eED~~L~~~v~~~G~~~W~~I~~~~~~~~Rt~~q~r~Rw~nl~K   51 (52)
T d1w0ta_           1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK   51 (52)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHT
T ss_pred             CCCCCCHHHHHHHHHHHHHHCCCCHHHHHhhcCCCCCCHHHHHHHHHHHHC
Confidence            4789999999999999999995 999999985  59999999999998764

>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: Telomeric repeat binding factor 2, TRF2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=2.9e-13  Score=102.15  Aligned_cols=50  Identities=28%  Similarity=0.508  Sum_probs=45.7

Q ss_pred             CCCCCCHHHHHHHHHHHHHhC-Cchhhhchh--cCCCChhHHHHHHHHHhhhh
Q 044977           72 KKGGWSPEEDMLLCEAQKIFG-NRWTEIAKV--VSGRTDNAVKNRFSTLCKKR  121 (479)
Q Consensus        72 kKg~WT~EEDelLLelvkk~G-nrWskIAk~--LPGRTdnqcKNRW~slLkKr  121 (479)
                      ++.+||+|||++|+++|.+|| ++|+.||+.  |++||+.||++||++++++.
T Consensus         1 Kr~~WT~eEd~~L~~~V~~~G~~~W~~I~~~~~~~~Rt~~q~k~Rwrn~~k~~   53 (55)
T d1w0ua_           1 KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLG   53 (55)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTT
T ss_pred             CCCCCCHHHHHHHHHHHHHhCCChHHHHHhhcCCCCcCHHHHHHHHHHHhcCC
Confidence            478999999999999999999 589999997  56999999999999998764

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=2.3e-13  Score=104.70  Aligned_cols=53  Identities=32%  Similarity=0.493  Sum_probs=48.3

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCchhhhchhcCCCChhHHHHHHHHHhhhhhhhh
Q 044977           73 KGGWSPEEDMLLCEAQKIFGNRWTEIAKVVSGRTDNAVKNRFSTLCKKRAKYE  125 (479)
Q Consensus        73 Kg~WT~EEDelLLelvkk~GnrWskIAk~LPGRTdnqcKNRW~slLkKr~K~~  125 (479)
                      ...||+|||.+|++++..||++|..||.+|||||+.+|++||+.++++..+..
T Consensus         2 ~~~WT~eEd~~l~~~~~~~G~~W~~Ia~~~~~Rt~~q~k~ry~~~~~~~~k~~   54 (65)
T d2cu7a1           2 SVKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVKCG   54 (65)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHHHHHHSCSC
T ss_pred             CCCCCHHHHHHHHHHHHHhcchHHHHHHHcCCCCHHHHHHHHHHHHHHHHhcC
Confidence            35799999999999999999999999999999999999999999988765443

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=3.8e-13  Score=103.45  Aligned_cols=59  Identities=20%  Similarity=0.377  Sum_probs=52.9

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCChhhHhhhcCCCChhhhhhhhhhccCCCCCCCCCCHHH
Q 044977           21 IVTWTQQEDDILREQISIHGTENWSIIASKFKDKTTRQCRRRWYTYLNSDFKKGGWSPEE   80 (479)
Q Consensus        21 rg~WT~EEDekL~elV~k~G~~nWs~IAk~lpgRT~kQCReRW~n~L~P~IkKg~WT~EE   80 (479)
                      .++||+|||++|+++|..|| .+|..||.+|++||..||+.||.+++++..+.+.+...+
T Consensus         2 ~~~WT~eEd~~l~~~~~~~G-~~W~~Ia~~~~~Rt~~q~k~ry~~~~~~~~k~~~~~~~~   60 (65)
T d2cu7a1           2 SVKWTIEEKELFEQGLAKFG-RRWTKISKLIGSRTVLQVKSYARQYFKNKVKCGLDKETP   60 (65)
T ss_dssp             CCCCCHHHHHHHHHHHHHTC-SCHHHHHHHHSSSCHHHHHHHHHHHHHHHSCSCTTCCCS
T ss_pred             CCCCCHHHHHHHHHHHHHhc-chHHHHHHHcCCCCHHHHHHHHHHHHHHHHhcCCCCCCc
Confidence            46899999999999999999 599999999999999999999999998877777665543

>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Transcriptional adaptor 2-like, TADA2L, isoform b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=1.4e-12  Score=95.56  Aligned_cols=43  Identities=23%  Similarity=0.552  Sum_probs=40.9

Q ss_pred             CCCHHHHHHHHHHHHHhC-CchhhhchhcCCCChhHHHHHHHHH
Q 044977           75 GWSPEEDMLLCEAQKIFG-NRWTEIAKVVSGRTDNAVKNRFSTL  117 (479)
Q Consensus        75 ~WT~EEDelLLelvkk~G-nrWskIAk~LPGRTdnqcKNRW~sl  117 (479)
                      .||++||.+|++++.+|| ++|..||.+|+|||+.||++||.++
T Consensus         3 ~Wt~eEd~~L~~~v~~~G~~nW~~Ia~~~~~Rt~~Qcr~r~~~~   46 (47)
T d1x41a1           3 SWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKY   46 (47)
T ss_dssp             SSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHCCccHHHHHHHcCCCCHHHHHHHHHHh
Confidence            599999999999999999 5799999999999999999999875

>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.27  E-value=2.3e-12  Score=98.26  Aligned_cols=50  Identities=20%  Similarity=0.419  Sum_probs=45.5

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCC----chhhhchhcCCCChhHHHHHHHHH
Q 044977           68 NSDFKKGGWSPEEDMLLCEAQKIFGN----RWTEIAKVVSGRTDNAVKNRFSTL  117 (479)
Q Consensus        68 ~P~IkKg~WT~EEDelLLelvkk~Gn----rWskIAk~LPGRTdnqcKNRW~sl  117 (479)
                      .+...+++||++||.+|++++..||.    +|.+||.+|||||+.||++||+.+
T Consensus         7 ~~~~~~~~WT~eEd~~L~~~v~~~~~~~~~~W~~IA~~l~~Rt~~qc~~R~~~L   60 (60)
T d2cqra1           7 RARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLL   60 (60)
T ss_dssp             TTTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHH
T ss_pred             cCCcCCCCcCHHHHHHHHHHHHHcCCccchHHHHHHHHcCCCCHHHHHHHHHHC
Confidence            45667889999999999999999995    699999999999999999999864

>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=2.9e-12  Score=97.68  Aligned_cols=52  Identities=19%  Similarity=0.363  Sum_probs=46.1

Q ss_pred             ccccCCCCCCCCHHHHHHHHHHHHHhCCC---ChhhHhhhcCCCChhhhhhhhhh
Q 044977           14 SKKKERHIVTWTQQEDDILREQISIHGTE---NWSIIASKFKDKTTRQCRRRWYT   65 (479)
Q Consensus        14 skKkkrkrg~WT~EEDekL~elV~k~G~~---nWs~IAk~lpgRT~kQCReRW~n   65 (479)
                      ..+.+..+++||+|||++|+++|..||.+   +|..||+.||+|++.||+.||..
T Consensus         5 ~~~~~~~~~~WT~eEd~~L~~~v~~~~~~~~~~W~~IA~~l~~Rt~~qc~~R~~~   59 (60)
T d2cqra1           5 KERARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKL   59 (60)
T ss_dssp             CCTTTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHH
T ss_pred             cccCCcCCCCcCHHHHHHHHHHHHHcCCccchHHHHHHHHcCCCCHHHHHHHHHH
Confidence            34555677899999999999999999976   59999999999999999999964

>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Radialis
species: Garden snapdragon (Antirrhinum majus) [TaxId: 4151]

Probab=99.16  E-value=1.7e-11  Score=94.25  Aligned_cols=47  Identities=30%  Similarity=0.654  Sum_probs=42.7

Q ss_pred             CCCCHHHHHHHHHHHHHhCC----chhhhchhcCCCChhHHHHHHHHHhhh
Q 044977           74 GGWSPEEDMLLCEAQKIFGN----RWTEIAKVVSGRTDNAVKNRFSTLCKK  120 (479)
Q Consensus        74 g~WT~EEDelLLelvkk~Gn----rWskIAk~LPGRTdnqcKNRW~slLkK  120 (479)
                      .+||+|||.+|++++..||.    +|.+||.+|||||++||++||+.+++.
T Consensus         2 ~~WT~eEd~~L~~~v~~~~~~~~~~W~~Ia~~l~gRt~~qc~~r~~~L~~d   52 (63)
T d2cjja1           2 RPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVED   52 (63)
T ss_dssp             CSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHCCCCchHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence            37999999999999999995    599999999999999999999776653

>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: 2610100b20rik gene product
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.15  E-value=1.1e-11  Score=103.64  Aligned_cols=71  Identities=15%  Similarity=0.191  Sum_probs=62.9

Q ss_pred             hcCCCChhhhhhhhhhccCCCCCCCCCCHHHHHHHHHHHHHhCCc---hhhhchhcCCCChhHHHHHHHHHhhh
Q 044977           50 KFKDKTTRQCRRRWYTYLNSDFKKGGWSPEEDMLLCEAQKIFGNR---WTEIAKVVSGRTDNAVKNRFSTLCKK  120 (479)
Q Consensus        50 ~lpgRT~kQCReRW~n~L~P~IkKg~WT~EEDelLLelvkk~Gnr---WskIAk~LPGRTdnqcKNRW~slLkK  120 (479)
                      .+|..+..++..++.+...+......||.|||.+||+.++++|.+   |..||+.|+|||+++||+||+.+++-
T Consensus        10 ~~p~~t~~~v~A~n~~~~s~G~~~~~WTrEEDriIL~~~q~~G~~~~tw~~Ia~~L~~Rs~~qvr~Rf~~Lm~l   83 (95)
T d1ug2a_          10 ALPKASEATVCANNSKVSSTGEKVVLWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELMQL   83 (95)
T ss_dssp             CCCCCCCCCCCCCCCCCCCCCCCCSSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHHHH
T ss_pred             cCCCCCccccccccCccCCCCCccCCcCHHHHHHHHHHHHHcCCcHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence            456666677778888878887788889999999999999999988   99999999999999999999998864

>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Radialis
species: Garden snapdragon (Antirrhinum majus) [TaxId: 4151]

Probab=99.14  E-value=1.4e-11  Score=94.69  Aligned_cols=44  Identities=11%  Similarity=0.489  Sum_probs=40.9

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCC---hhhHhhhcCCCChhhhhhhhhh
Q 044977           22 VTWTQQEDDILREQISIHGTEN---WSIIASKFKDKTTRQCRRRWYT   65 (479)
Q Consensus        22 g~WT~EEDekL~elV~k~G~~n---Ws~IAk~lpgRT~kQCReRW~n   65 (479)
                      .+||+|||.+|.++|..||.++   |..||.+|++||+.||+.||..
T Consensus         2 ~~WT~eEd~~L~~~v~~~~~~~~~~W~~Ia~~l~gRt~~qc~~r~~~   48 (63)
T d2cjja1           2 RPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEI   48 (63)
T ss_dssp             CSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHCCCCchHHHHHHHHcCCCCHHHHHHHHHH
Confidence            4799999999999999999764   9999999999999999999943

>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Telomere binding protein TBP1
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=99.11  E-value=3.2e-11  Score=97.47  Aligned_cols=52  Identities=25%  Similarity=0.351  Sum_probs=45.8

Q ss_pred             CCCHHHHHHHHHHHHHhC-Cchhhhchh----cCCCChhHHHHHHHHHhhhhhhhhh
Q 044977           75 GWSPEEDMLLCEAQKIFG-NRWTEIAKV----VSGRTDNAVKNRFSTLCKKRAKYEA  126 (479)
Q Consensus        75 ~WT~EEDelLLelvkk~G-nrWskIAk~----LPGRTdnqcKNRW~slLkKr~K~~~  126 (479)
                      +||+|||..|+++|.+|| ++|+.|++.    ++|||+.|||+||+++++.......
T Consensus         2 ~WT~eEd~~L~~~V~~~G~~~W~~I~~~~~~~~~~Rt~~qck~RWrn~l~~~~~~~~   58 (83)
T d2ckxa1           2 PFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQ   58 (83)
T ss_dssp             CCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHHSCGG
T ss_pred             CCCHHHHHHHHHHHHHHCcccHHHHHHHHHhhccCCCHHHHHHHHHHHhhhhccCcc
Confidence            799999999999999999 589999985    6899999999999999986544433

>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: REST corepressor 1, CoREST
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.06  E-value=5.5e-11  Score=91.50  Aligned_cols=48  Identities=25%  Similarity=0.533  Sum_probs=44.6

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCchhhhchhcCCCChhHHHHHHHHHhhh
Q 044977           73 KGGWSPEEDMLLCEAQKIFGNRWTEIAKVVSGRTDNAVKNRFSTLCKK  120 (479)
Q Consensus        73 Kg~WT~EEDelLLelvkk~GnrWskIAk~LPGRTdnqcKNRW~slLkK  120 (479)
                      ...||++||.+|++++..||.+|..||.+|||||..+|++||....++
T Consensus         5 ~~~WT~eE~~~f~~~~~~~G~~w~~Ia~~~~~kt~~q~~~~y~~~~k~   52 (65)
T d2iw5b1           5 NARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRR   52 (65)
T ss_dssp             CSSCCHHHHHHHHHHHHHHSSCHHHHHHHHSSCCHHHHHHHHHHTTTT
T ss_pred             CCCCCHHHHHHHHHHHHHhCchHHHHHHHcCCCCHHHHHHHHHHHHhh
Confidence            457999999999999999999999999999999999999999887653

>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Nuclear receptor corepressor 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.02  E-value=1e-10  Score=90.88  Aligned_cols=47  Identities=15%  Similarity=0.068  Sum_probs=43.2

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCchhhhchhcCCCChhHHHHHHHHHh
Q 044977           72 KKGGWSPEEDMLLCEAQKIFGNRWTEIAKVVSGRTDNAVKNRFSTLC  118 (479)
Q Consensus        72 kKg~WT~EEDelLLelvkk~GnrWskIAk~LPGRTdnqcKNRW~slL  118 (479)
                      ...+||+||+.+|++++..||.+|..||.+|||||..||++||....
T Consensus        16 ~~~~WT~eE~~~f~~~~~~~G~~w~~Ia~~~~~rt~~q~~~~yy~~k   62 (68)
T d1xc5a1          16 VMNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYYLTK   62 (68)
T ss_dssp             TTTCCCTTTHHHHHHHHHHTTSCSSSHHHHTTTSCHHHHHHHHHHHT
T ss_pred             CCCCCCHHHHHHHHHHHHHHCCcHHHHHHHcCCCCHHHHHHHHHHHH
Confidence            34679999999999999999999999999999999999999997543

>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: REST corepressor 1, CoREST
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.90  E-value=7.4e-10  Score=85.08  Aligned_cols=49  Identities=18%  Similarity=0.339  Sum_probs=44.8

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCChhhHhhhcCCCChhhhhhhhhhccC
Q 044977           19 RHIVTWTQQEDDILREQISIHGTENWSIIASKFKDKTTRQCRRRWYTYLN   68 (479)
Q Consensus        19 rkrg~WT~EEDekL~elV~k~G~~nWs~IAk~lpgRT~kQCReRW~n~L~   68 (479)
                      +...+||+|||++|.+++..||. +|..||.+|++|+..||+.+|.++.+
T Consensus         3 k~~~~WT~eE~~~f~~~~~~~G~-~w~~Ia~~~~~kt~~q~~~~y~~~~k   51 (65)
T d2iw5b1           3 KCNARWTTEEQLLAVQAIRKYGR-DFQAISDVIGNKSVVQVKNFFVNYRR   51 (65)
T ss_dssp             CCCSSCCHHHHHHHHHHHHHHSS-CHHHHHHHHSSCCHHHHHHHHHHTTT
T ss_pred             CCCCCCCHHHHHHHHHHHHHhCc-hHHHHHHHcCCCCHHHHHHHHHHHHh
Confidence            45568999999999999999994 89999999999999999999998764

>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Nuclear receptor corepressor 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.87  E-value=5.5e-10  Score=86.64  Aligned_cols=52  Identities=29%  Similarity=0.527  Sum_probs=45.8

Q ss_pred             ccCCCCCCCCHHHHHHHHHHHHHhCCCChhhHhhhcCCCChhhhhhhhhhccC
Q 044977           16 KKERHIVTWTQQEDDILREQISIHGTENWSIIASKFKDKTTRQCRRRWYTYLN   68 (479)
Q Consensus        16 Kkkrkrg~WT~EEDekL~elV~k~G~~nWs~IAk~lpgRT~kQCReRW~n~L~   68 (479)
                      +.++...+||+|||++|.++|..||. +|..||..|++|+..||+.+|+....
T Consensus        12 ~~~~~~~~WT~eE~~~f~~~~~~~G~-~w~~Ia~~~~~rt~~q~~~~yy~~kk   63 (68)
T d1xc5a1          12 KDRQVMNMWSEQEKETFREKFMQHPK-NFGLIASFLERKTVAECVLYYYLTKK   63 (68)
T ss_dssp             TSTTTTTCCCTTTHHHHHHHHHHTTS-CSSSHHHHTTTSCHHHHHHHHHHHTT
T ss_pred             ccccCCCCCCHHHHHHHHHHHHHHCC-cHHHHHHHcCCCCHHHHHHHHHHHHC
Confidence            34456678999999999999999995 89999999999999999999986543

>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: 2610100b20rik gene product
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.56  E-value=2.3e-08  Score=83.22  Aligned_cols=52  Identities=19%  Similarity=0.445  Sum_probs=45.2

Q ss_pred             cccCCCCCCCCHHHHHHHHHHHHHhCCCC--hhhHhhhcCCCChhhhhhhhhhc
Q 044977           15 KKKERHIVTWTQQEDDILREQISIHGTEN--WSIIASKFKDKTTRQCRRRWYTY   66 (479)
Q Consensus        15 kKkkrkrg~WT~EEDekL~elV~k~G~~n--Ws~IAk~lpgRT~kQCReRW~n~   66 (479)
                      .++-.+...||.|||.+|++.++++|...  |..||..|++|++.|||.||...
T Consensus        27 ~s~G~~~~~WTrEEDriIL~~~q~~G~~~~tw~~Ia~~L~~Rs~~qvr~Rf~~L   80 (95)
T d1ug2a_          27 SSTGEKVVLWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFREL   80 (95)
T ss_dssp             CCCCCCCSSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHH
T ss_pred             CCCCCccCCcCHHHHHHHHHHHHHcCCcHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence            34445677999999999999999999643  99999999999999999999763

>d2cqqa1 a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.04  E-value=1.9e-06  Score=65.87  Aligned_cols=44  Identities=27%  Similarity=0.462  Sum_probs=40.5

Q ss_pred             CCCCHHHHHHHHHHHHHhC----CchhhhchhcCCCChhHHHHHHHHHh
Q 044977           74 GGWSPEEDMLLCEAQKIFG----NRWTEIAKVVSGRTDNAVKNRFSTLC  118 (479)
Q Consensus        74 g~WT~EEDelLLelvkk~G----nrWskIAk~LPGRTdnqcKNRW~slL  118 (479)
                      +.||.+|+.+|.+++.+|+    +||.+||.++ |||..+|..||+.+.
T Consensus         2 ~eWT~ee~~~le~Al~~~P~gt~~RW~~IA~~v-gkt~~ev~~~~k~l~   49 (59)
T d2cqqa1           2 PEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLK   49 (59)
T ss_dssp             CCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHH-CCCHHHHHHHHHHHH
Confidence            4799999999999999997    5899999999 999999999997664

>d2crga1 a.4.1.3 (A:8-64) Metastasis associated protein MTA3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Metastasis associated protein MTA3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.86  E-value=9.5e-06  Score=60.85  Aligned_cols=43  Identities=19%  Similarity=0.373  Sum_probs=39.8

Q ss_pred             CCCCHHHHHHHHHHHHHhCCchhhhchh-cCCCChhHHHHHHHH
Q 044977           74 GGWSPEEDMLLCEAQKIFGNRWTEIAKV-VSGRTDNAVKNRFST  116 (479)
Q Consensus        74 g~WT~EEDelLLelvkk~GnrWskIAk~-LPGRTdnqcKNRW~s  116 (479)
                      ..||+||-.++.+++..||.+|..|++. +|+||..+|.++|..
T Consensus         2 d~WT~eE~~~F~~~~~~yGKdf~~I~~~~v~~Ks~~~~v~fYY~   45 (57)
T d2crga1           2 EEWSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYYYM   45 (57)
T ss_dssp             CCCCHHHHHHHHHHHHHTCSCHHHHHHTTCSSSCHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHcccHHHHHHHHcCCCCHHHHHHHHHH
Confidence            3699999999999999999999999985 699999999999964

>d2cqqa1 a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.70  E-value=1.4e-05  Score=60.83  Aligned_cols=44  Identities=14%  Similarity=0.299  Sum_probs=39.5

Q ss_pred             CCCCHHHHHHHHHHHHHhCCC---ChhhHhhhcCCCChhhhhhhhhhc
Q 044977           22 VTWTQQEDDILREQISIHGTE---NWSIIASKFKDKTTRQCRRRWYTY   66 (479)
Q Consensus        22 g~WT~EEDekL~elV~k~G~~---nWs~IAk~lpgRT~kQCReRW~n~   66 (479)
                      ..||+||+.+|.+++..|+.+   +|..||..+ ||+..+|..|+...
T Consensus         2 ~eWT~ee~~~le~Al~~~P~gt~~RW~~IA~~v-gkt~~ev~~~~k~l   48 (59)
T d2cqqa1           2 PEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQL   48 (59)
T ss_dssp             CCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHH-CCCHHHHHHHHHHH
Confidence            479999999999999999755   699999999 79999999998653

>d2crga1 a.4.1.3 (A:8-64) Metastasis associated protein MTA3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Metastasis associated protein MTA3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.47  E-value=6.5e-05  Score=56.16  Aligned_cols=43  Identities=16%  Similarity=0.364  Sum_probs=39.2

Q ss_pred             CCCHHHHHHHHHHHHHhCCCChhhHhhh-cCCCChhhhhhhhhhc
Q 044977           23 TWTQQEDDILREQISIHGTENWSIIASK-FKDKTTRQCRRRWYTY   66 (479)
Q Consensus        23 ~WT~EEDekL~elV~k~G~~nWs~IAk~-lpgRT~kQCReRW~n~   66 (479)
                      .||+||-.++.+++..||. +|..|++. +|+|+..||...|...
T Consensus         3 ~WT~eE~~~F~~~~~~yGK-df~~I~~~~v~~Ks~~~~v~fYY~~   46 (57)
T d2crga1           3 EWSASEACLFEEALEKYGK-DFNDIRQDFLPWKSLTSIIEYYYMW   46 (57)
T ss_dssp             CCCHHHHHHHHHHHHHTCS-CHHHHHHTTCSSSCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHcc-cHHHHHHHHcCCCCHHHHHHHHHHH
Confidence            6999999999999999995 99999985 6999999999988754

>d1irza_ a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: GARP response regulators
domain: Arr10-B
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.51  E-value=0.0017  Score=49.75  Aligned_cols=49  Identities=14%  Similarity=0.216  Sum_probs=40.0

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhCCCCh--hhHhhhc--CCCChhhhhhhhhhc
Q 044977           18 ERHIVTWTQQEDDILREQISIHGTENW--SIIASKF--KDKTTRQCRRRWYTY   66 (479)
Q Consensus        18 krkrg~WT~EEDekL~elV~k~G~~nW--s~IAk~l--pgRT~kQCReRW~n~   66 (479)
                      ++.+..||+||-++++++|..+|.+.|  ..|...|  +++|..||+.+...|
T Consensus         4 kk~R~~WT~elH~~Fv~Av~~lG~~~atpk~I~~~m~v~~lT~~qV~SHlQKY   56 (64)
T d1irza_           4 KKPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKF   56 (64)
T ss_dssp             CCSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHH
T ss_pred             CCCCCCCCHHHHHHHHHHHHHhCccccchHHHHHHcCCCCCCHHHHHHHHHHH
Confidence            445678999999999999999997655  5777775  478999999887765

>d1fexa_ a.4.1.3 (A:) Rap1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Rap1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.50  E-value=0.0017  Score=49.11  Aligned_cols=48  Identities=13%  Similarity=0.335  Sum_probs=41.2

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCC------C--hhhHhh-hcCCCChhhhhhhhhhccC
Q 044977           21 IVTWTQQEDDILREQISIHGTE------N--WSIIAS-KFKDKTTRQCRRRWYTYLN   68 (479)
Q Consensus        21 rg~WT~EEDekL~elV~k~G~~------n--Ws~IAk-~lpgRT~kQCReRW~n~L~   68 (479)
                      |.++|.|||+.|.++|..+...      |  |..+++ ..+.++..+-|+||.++|+
T Consensus         2 R~~fT~eeD~~l~~yv~~~~~~~~~~~Gn~iwk~l~~~~~~~HtwQSwrdRY~K~L~   58 (59)
T d1fexa_           2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHLR   58 (59)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHhccCcCCccHHHHHHHHHHhcCCCCCHHHHHHHHHHHhc
Confidence            6789999999999999998422      2  999995 5788999999999999885

>d1irza_ a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: GARP response regulators
domain: Arr10-B
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.36  E-value=0.0036  Score=47.92  Aligned_cols=47  Identities=17%  Similarity=0.191  Sum_probs=39.9

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCchh---hhchh--cCCCChhHHHHHHHHHhh
Q 044977           73 KGGWSPEEDMLLCEAQKIFGNRWT---EIAKV--VSGRTDNAVKNRFSTLCK  119 (479)
Q Consensus        73 Kg~WT~EEDelLLelvkk~GnrWs---kIAk~--LPGRTdnqcKNRW~slLk  119 (479)
                      +-.||+|+...+++++..+|..|.   .|...  ++|+|..+|+.|.+.+.-
T Consensus         7 R~~WT~elH~~Fv~Av~~lG~~~atpk~I~~~m~v~~lT~~qV~SHlQKYrl   58 (64)
T d1irza_           7 RVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFRV   58 (64)
T ss_dssp             SCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHhCccccchHHHHHHcCCCCCCHHHHHHHHHHHHH
Confidence            557999999999999999998874   66666  499999999999876643

>d1fexa_ a.4.1.3 (A:) Rap1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Rap1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.27  E-value=0.0024  Score=48.24  Aligned_cols=47  Identities=15%  Similarity=0.312  Sum_probs=40.1

Q ss_pred             CCCCCHHHHHHHHHHHHHhC--------Cc-hhhhch-hcCCCChhHHHHHHHHHhh
Q 044977           73 KGGWSPEEDMLLCEAQKIFG--------NR-WTEIAK-VVSGRTDNAVKNRFSTLCK  119 (479)
Q Consensus        73 Kg~WT~EEDelLLelvkk~G--------nr-WskIAk-~LPGRTdnqcKNRW~slLk  119 (479)
                      |.+||.+||..|+..+..+.        |. |..+++ .+|.+|-.+.|+||...|+
T Consensus         2 R~~fT~eeD~~l~~yv~~~~~~~~~~~Gn~iwk~l~~~~~~~HtwQSwrdRY~K~L~   58 (59)
T d1fexa_           2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHLR   58 (59)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHhccCcCCccHHHHHHHHHHhcCCCCCHHHHHHHHHHHhc
Confidence            56899999999999999874        22 999995 6799999999999987664

>d1x58a1 a.4.1.1 (A:8-56) Hypothetical protein 4930532d21rik {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Hypothetical protein 4930532d21rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.00  E-value=0.0063  Score=43.99  Aligned_cols=45  Identities=24%  Similarity=0.459  Sum_probs=39.3

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCchhhhchhc---CCCChhHHHHHHHHH
Q 044977           73 KGGWSPEEDMLLCEAQKIFGNRWTEIAKVV---SGRTDNAVKNRFSTL  117 (479)
Q Consensus        73 Kg~WT~EEDelLLelvkk~GnrWskIAk~L---PGRTdnqcKNRW~sl  117 (479)
                      |..||.||-.-|...+++||+.|..|-=.+   |||+.-++...|..+
T Consensus         1 Rknft~eEv~YL~~GVK~~G~~WNsILWs~PF~~GR~~vdLA~Ky~~l   48 (49)
T d1x58a1           1 RKDFTKEEVNYLFHGVKTMGNHWNSILWSFPFQKGRRAVDLAHKYHRL   48 (49)
T ss_dssp             SSSCCHHHHHHHHHHHHHHCSCHHHHHHHSCCCTTCCHHHHHHHHHHH
T ss_pred             CCcccHHHHHHHHHHHHHhcchhhhhhhccCCCCCchhhHHHHHHHhh
Confidence            457999999999999999999999996543   899999998888764

>d1wgxa_ a.4.1.3 (A:) Hypothetical protein C14orf106 (KIAA1903) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Hypothetical protein C14orf106 (KIAA1903)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.69  E-value=0.039  Score=42.96  Aligned_cols=51  Identities=16%  Similarity=0.336  Sum_probs=43.6

Q ss_pred             CCCCCCHHHHHHHHHHHHHhC---CCChhhHhhhcCCCChhhhhhhhhhccCCC
Q 044977           20 HIVTWTQQEDDILREQISIHG---TENWSIIASKFKDKTTRQCRRRWYTYLNSD   70 (479)
Q Consensus        20 krg~WT~EEDekL~elV~k~G---~~nWs~IAk~lpgRT~kQCReRW~n~L~P~   70 (479)
                      .-+.|+++|-++|-.++....   .+.|..||..++.|++..|...|...+.-.
T Consensus         7 ~d~~W~e~ELqkLh~A~~SlPkh~~gfW~~VA~~VGtRSaeECQ~ky~~~~~~~   60 (73)
T d1wgxa_           7 GDKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENPRGK   60 (73)
T ss_dssp             SSSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHSSSSS
T ss_pred             cccccCHHHHHHHHHHHHhcCCCCCccHHHHHHHHccCCHHHHHHHHHhCcccc
Confidence            446899999999999988764   456999999999999999999999876543

>d1x58a1 a.4.1.1 (A:8-56) Hypothetical protein 4930532d21rik {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Hypothetical protein 4930532d21rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.67  E-value=0.24  Score=35.55  Aligned_cols=44  Identities=16%  Similarity=0.316  Sum_probs=37.3

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCChhhHhhhcC---CCChhhhhhhhhh
Q 044977           21 IVTWTQQEDDILREQISIHGTENWSIIASKFK---DKTTRQCRRRWYT   65 (479)
Q Consensus        21 rg~WT~EEDekL~elV~k~G~~nWs~IAk~lp---gRT~kQCReRW~n   65 (479)
                      |..||.||-.-|...|+++|. .|+.|-=.+|   ||+......+|+.
T Consensus         1 Rknft~eEv~YL~~GVK~~G~-~WNsILWs~PF~~GR~~vdLA~Ky~~   47 (49)
T d1x58a1           1 RKDFTKEEVNYLFHGVKTMGN-HWNSILWSFPFQKGRRAVDLAHKYHR   47 (49)
T ss_dssp             SSSCCHHHHHHHHHHHHHHCS-CHHHHHHHSCCCTTCCHHHHHHHHHH
T ss_pred             CCcccHHHHHHHHHHHHHhcc-hhhhhhhccCCCCCchhhHHHHHHHh
Confidence            357999999999999999995 8999998876   8888877776654

>d1wgxa_ a.4.1.3 (A:) Hypothetical protein C14orf106 (KIAA1903) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Hypothetical protein C14orf106 (KIAA1903)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.71  E-value=0.32  Score=37.68  Aligned_cols=47  Identities=19%  Similarity=0.301  Sum_probs=40.3

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCC----chhhhchhcCCCChhHHHHHHHHHh
Q 044977           72 KKGGWSPEEDMLLCEAQKIFGN----RWTEIAKVVSGRTDNAVKNRFSTLC  118 (479)
Q Consensus        72 kKg~WT~EEDelLLelvkk~Gn----rWskIAk~LPGRTdnqcKNRW~slL  118 (479)
                      .-+.|+++|=.+|-.++..+..    -|..+|..+..||..+|...|..-.
T Consensus         7 ~d~~W~e~ELqkLh~A~~SlPkh~~gfW~~VA~~VGtRSaeECQ~ky~~~~   57 (73)
T d1wgxa_           7 GDKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENP   57 (73)
T ss_dssp             SSSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHSS
T ss_pred             cccccCHHHHHHHHHHHHhcCCCCCccHHHHHHHHccCCHHHHHHHHHhCc
Confidence            3468999999999999988874    3999999999999999999886543

>d1ofcx2 a.4.1.13 (X:851-978) SLIDE domain of the nucleosome remodeling ATPase ISWI {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: SLIDE domain
domain: SLIDE domain of the nucleosome remodeling ATPase ISWI
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=87.82  E-value=0.42  Score=40.56  Aligned_cols=64  Identities=19%  Similarity=0.270  Sum_probs=47.3

Q ss_pred             hhhhhhhhc--cCCCCCCCCCCHHHHHHHHHHHHHhC-Cc---hhhhchh------------cCCCChhHHHHHHHHHhh
Q 044977           58 QCRRRWYTY--LNSDFKKGGWSPEEDMLLCEAQKIFG-NR---WTEIAKV------------VSGRTDNAVKNRFSTLCK  119 (479)
Q Consensus        58 QCReRW~n~--L~P~IkKg~WT~EEDelLLelvkk~G-nr---WskIAk~------------LPGRTdnqcKNRW~slLk  119 (479)
                      +|+.-|..-  -.+..++..+|.|||.-|+-++.+|| ++   |..|-..            +..||+..|..|..++++
T Consensus        32 ~y~~P~~eL~i~y~~nk~k~yteeEDRfLl~~~~~~G~~~~~~~e~ir~~Ir~~p~FrFDwf~kSRt~~el~rR~~tLi~  111 (128)
T d1ofcx2          32 RYRAPFHQLRLQYGNNKGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRCNTLIT  111 (128)
T ss_dssp             TCSSHHHHCCCCCTTCCCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHHHHHHH
T ss_pred             HhcChHHHhhhhccccCCCccCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHhCcchhhhhHhccCCHHHHHHHHHHHHH
Confidence            455555532  11344555799999999999999999 44   8887432            467999999999999987


Q ss_pred             hh
Q 044977          120 KR  121 (479)
Q Consensus       120 Kr  121 (479)
                      --
T Consensus       112 ~i  113 (128)
T d1ofcx2         112 LI  113 (128)
T ss_dssp             HH
T ss_pred             HH
Confidence            53

>d1ofcx1 a.4.1.3 (X:799-850) SANT domain of the nucleosome remodeling ATPase ISWI {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: SANT domain of the nucleosome remodeling ATPase ISWI
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=86.80  E-value=0.61  Score=33.97  Aligned_cols=44  Identities=23%  Similarity=0.373  Sum_probs=38.8

Q ss_pred             CCCHHHHHHHHHHHHHhC-CchhhhchhcCCCChhHHHHHHHHHh
Q 044977           75 GWSPEEDMLLCEAQKIFG-NRWTEIAKVVSGRTDNAVKNRFSTLC  118 (479)
Q Consensus        75 ~WT~EEDelLLelvkk~G-nrWskIAk~LPGRTdnqcKNRW~slL  118 (479)
                      .|+.-|=..++.+..+|| .+-..||..|.|+|..+|+.+....-
T Consensus         1 ~WnrrdF~~Fi~a~ekyGR~d~~~Ia~e~~~Kt~eEV~~Y~~vFw   45 (52)
T d1ofcx1           1 AWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIEYNAVFW   45 (52)
T ss_dssp             TCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHhhHHHHHHHhcCCCHHHHHHHHHHHH
Confidence            399999999999999999 58999999999999999988765443

>d3bvua1 a.8.3.1 (A:412-522) Golgi alpha-mannosidase II {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: immunoglobulin/albumin-binding domain-like
superfamily: Families 57/38 glycoside transferase middle domain
family: alpha-mannosidase, domain 2
domain: Golgi alpha-mannosidase II
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=80.72  E-value=0.31  Score=39.55  Aligned_cols=60  Identities=22%  Similarity=0.281  Sum_probs=45.6

Q ss_pred             ccccCCChhHHHHHHHHHHHHHHhhhhCCCchhHHHHHHHHHHHHHhcccCcCcccccCcCcc
Q 044977          243 TFLKKDDPKITALIQQAELLSSLAQKVNTESTEQSLENAWKVLQDFLNRSKENDILRCKISDI  305 (479)
Q Consensus       243 ~~l~~~~pk~~~~~qq~~ll~sla~k~~~~~~~qs~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (479)
                      .+||+-.-++..+++++|.|+++|...+..-..+.|+++||.|-  +++--|. |.++.+...
T Consensus        12 ~~lK~~~R~~e~~L~~~E~l~~~~~~~~~~~~~~~l~~~wk~l~--~~Q~HD~-I~GTs~~~V   71 (111)
T d3bvua1          12 PYHKRMDRVLMHYVRAAEMLSAWHSWDGMARIEERLEQARRELS--LFQHHDG-ITGTAKTHV   71 (111)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTSCCCGGGCHHHHHHHHHHHHH--HHTBTTT-TTSCSCHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHH--hcccccc-ccccCcHHH
Confidence            47888888899999999999999987666666788999999763  3444343 677776543