Citrus Sinensis ID: 044992

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------
MDALSSSFMSTLPPQIQRLHYSPTKTKAPLLLPSSSSSSRTNNVIVSTTSPPKKPETTEENNKQQTKTTQKPSSSVSTTTNVSAVILNTLNKLIKPKLQAQPLSLDPSRAFSNNLAPVDELHPTQCQVTQGSLPSCLEGAYIRNGPNPQYPPRSEPYSPFDGDGMLHCIKISQGQATFCSRYVKTYKYTIENTVGSPIVPSPFSSFSGPLAFLTRAGVLAARVLTGQLSINSGFGLANTSLAFLGNRLLALYEGDLPYAVRLTSNGDIETLGRCDLDGKLVMNMTAHPKKDPETGEMFAFRYSPMPPFVTYFWFDANGEKQPDVHIKMPGQWLRHPPLMHDFAITKRYAIFVDTQVQAYGMEMILRREPLLHSDPTKVSRIGVMPRYAKNSSQMRWFDAPGLNNIHAVNAWDEEDGNVIVMVAPNILSVEQVFERMELIHCLMEKVRIDLRTGVVSRHPISARNLDMAVINPGYVAKKNRYVYAAVGDPMPKMTGLVKLDLTKGERQECTVATRIYGPDCYGGEPFFAARDAADKEADEDDGYILSYVHDEKAGESKFLVMDAKSPHLDIVAEVKLPQRVPAGFHGLFVREIDFCKL
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccEEEEcccccccEEEEEEcccccccccccccccccccccEEEEEEEccEEEEEEEEEccHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHcccccccccccccEEEEEEEccEEEEEEEcccccEEEEccccccccccccccccccccccccccccccccccEEEEEEcccccEEEEEEEcccccEEcEEEEEccccccccccccccccccccEEEEEEccccccHHHHHHcccccEEEccccccEEEEEEccccccccEEEEEccccEEEEcccEEEccccEEEEEEEccccccHHHHHHHcccccEEEEEEEEcccccEEEEEcccccccccccccccccccccEEEEEEccccccccEEEEEEcccccEEEEEEEEEEccccccccccEEEEccccccccccccEEEEEEEEEcccccEEEEEEEccccccccEEEEEcccccccccccccccccccccc
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHcccccccccccccccEEEcccccccccccccccccEEEEcccHcccEEEEcccccccccccccccccccccEEEEEEEcccEEEEEEEEEEcHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHccccccccccccEEEEEEEEcccEEEEEcccccEEEEEcccccEEEccEEcccccEcccEccccccccccccEEEEcccccccEEEEEEEcccccccccEEEEEcccccccccEEEcEEEcccEEEEccccEEEcHHHHHcccccEEEEccccccEEEEEEccccccccEEEEEccccEEEEEEEcccccccEEEEEEEcccccHHHHHHcHHHccccEEEEEEEcccccEEEEEccccccccccEcccHcccccEEEEEEEEcccccccEEEEEEEccccEcEEEEEEEEccccccccccEEEccccccccccccccEEEEEEEEcccccEEEEEEEccccccccEEEEEccccccccccEEEccHHHHHcc
mdalsssfmstlppqiqrlhysptktkaplllpssssssrtnnvivsttsppkkpetteennkqqtkttqkpsssvsttTNVSAVILNTLNKLikpklqaqplsldpsrafsnnlapvdelhptqcqvtqgslpsclegayirngpnpqypprsepyspfdgdgmlHCIKISQGQATFCSRYVKTYKYTientvgspivpspfssfsgplaFLTRAGVLAARVLTGQlsinsgfglantSLAFLGNRLLALYegdlpyavrltsngdietlgrcdldgklvmnmtahpkkdpetgemfafryspmppfvtyfwfdangekqpdvhikmpgqwlrhpplmhdfaITKRYAIFVDTQVQAYGMEMilrrepllhsdptkvsrigvmpryaknssqmrwfdapglnnihavnawdeedgnVIVMVAPNILSVEQVFERMELIHCLMEKVRIDLrtgvvsrhpisarnldmavinpgyvakknryvyaavgdpmpkmtglvkldltkgerqeCTVAtriygpdcyggepffaardaadkeadeddgyiLSYVHdekageskflvmdaksphldivaevklpqrvpagfhglFVREIDFCKL
MDALSSSFMSTLPPQIQRLHYSPTKTKAPlllpssssssrtnnvivsttsppkkpetteennkqqtkttqkpsssvstttNVSAVILNTLNKLIKPKLQAQPLSLDPSRAFSNNLAPVDELHPTQCQVTQGSLPSCLEGAYIRNGPNPQYPPRSEPYSPFDGDGMLHCIKISQGQATFCSRYVKTYKYTIENTVGSPIVPSPFSSFSGPLAFLTRAGVLAARVLTGQLSINSGFGLANTSLAFLGNRLLALYEGDLPYAVRLTSNGDIETLGRCDLDGKLVMNMTAHPKKDPETGEMFAFRYSPMPPFVTYFWFDANGEKQPDVHIKMPGQWLRHPPLMHDFAITKRYAIFVDTQVQAYGMEMILrrepllhsdptkvsriGVMPRYAKNSSQMRWFDAPGLNNIHAVNAWDEEDGNVIVMVAPNILSVEQVFERMELIHCLMEKVRIDLRTGVVSrhpisarnldmavinpgyvaKKNRYVYAAVGDPMPKMTGLVKldltkgerqeCTVATriygpdcyGGEPFFAARDAADKEADEDDGYILSYVHDEKAGESKFLVMDAKSPHLDIVAEVKLPQRVPAGFHGLFVREIDFCKL
MDALSSSFMSTLPPQIQRLHYSPTKTKAplllpssssssRTNNVIVsttsppkkpetteennkQQTKTTQKPsssvstttnvsavILNTLNKLIKPKLQAQPLSLDPSRAFSNNLAPVDELHPTQCQVTQGSLPSCLEGAYIRNGPNPQYPPRSEPYSPFDGDGMLHCIKISQGQATFCSRYVKTYKYTIENTvgspivpspfssfsgpLAFLTRAGVLAARVLTGQLSINSGFGLANTSLAFLGNRLLALYEGDLPYAVRLTSNGDIETLGRCDLDGKLVMNMTAHPKKDPETGEMFAFRYSPMPPFVTYFWFDANGEKQPDVHIKMPGQWLRHPPLMHDFAITKRYAIFVDTQVQAYGMEMILRREPLLHSDPTKVSRIGVMPRYAKNSSQMRWFDAPGLNNIHAVNAWDEEDGNVIVMVAPNILSVEQVFERMELIHCLMEKVRIDLRTGVVSRHPISARNLDMAVINPGYVAKKNRYVYAAVGDPMPKMTGLVKLDLTKGERQECTVATRIYGPDCYGGEPFFaardaadkeadeddGYILSYVHDEKAGESKFLVMDAKSPHLDIVAEVKLPQRVPAGFHGLFVREIDFCKL
*********************************************************************************VSAVILNTLNKLIK******************************CQVT***LPSCLEGAYI*******************GDGMLHCIKISQGQATFCSRYVKTYKYTIENTVGSPIVPSPFSSFSGPLAFLTRAGVLAARVLTGQLSINSGFGLANTSLAFLGNRLLALYEGDLPYAVRLTSNGDIETLGRCDLDGKLVMNMT**********EMFAFRYSPMPPFVTYFWFDANGEKQPDVHIKMPGQWLRHPPLMHDFAITKRYAIFVDTQVQAYGMEMILRREPLLHSDPTKVSRIGVMPRYAKNSSQMRWFDAPGLNNIHAVNAWDEEDGNVIVMVAPNILSVEQVFERMELIHCLMEKVRIDLRTGVVSRHPISARNLDMAVINPGYVAKKNRYVYAAVGDPMPKMTGLVKLDLTKGERQECTVATRIYGPDCYGGEPFFAARDAA******DDGYILSYVHDEKAGESKFLVMDAKSPHLDIVAEVKLPQRVPAGFHGLFVREIDFC**
************************************************************************************VILNTLNKLIKPKLQAQPLSLDPSRAFSNNLAPVDELHPTQCQVTQGSLPSCLEGAYIRNGPNPQYPPRSEPYSPFDGDGMLHCIKISQGQATFCSRYVKTYKYTIENTVGSPIVPSPFSSFSGPLAFLTRAGVLAARVLTGQLSINSGFGLANTSLAFLGNRLLALYEGDLPYAVRLTSNGDIETLGRCDLDGKLVMNMTAHPKKDPETGEMFAFRYSPMPPFVTYFWFDANGEKQPDVHIKMPGQWLRHPPLMHDFAITKRYAIFVDTQVQAYGMEMILRREPLLHSDPTKVSRIGVMPRYAKNSSQMRWFDAPGLNNIHAVNAWDEEDGNVIVMVAPNILSVEQVFERMELIHCLMEKVRIDLRTGVVSRHPISARNLDMAVINPGYVAKKNRYVYAAVGDPMPKMTGLVKLDLTKGERQECTVATRIYGPDCYGGEPFFAARDAADKEADEDDGYILSYVHDEKAGESKFLVMDAKSPHLDIVAEVKLPQRVPAGFHGLFVREIDFCKL
*********STLPPQIQRLHYSPTKTKAPLL************************************************TNVSAVILNTLNKLIKPKLQAQPLSLDPSRAFSNNLAPVDELHPTQCQVTQGSLPSCLEGAYIRNGPNPQYPPRSEPYSPFDGDGMLHCIKISQGQATFCSRYVKTYKYTIENTVGSPIVPSPFSSFSGPLAFLTRAGVLAARVLTGQLSINSGFGLANTSLAFLGNRLLALYEGDLPYAVRLTSNGDIETLGRCDLDGKLVMNMTAHPKKDPETGEMFAFRYSPMPPFVTYFWFDANGEKQPDVHIKMPGQWLRHPPLMHDFAITKRYAIFVDTQVQAYGMEMILRREPLLHSDPTKVSRIGVMPRYAKNSSQMRWFDAPGLNNIHAVNAWDEEDGNVIVMVAPNILSVEQVFERMELIHCLMEKVRIDLRTGVVSRHPISARNLDMAVINPGYVAKKNRYVYAAVGDPMPKMTGLVKLDLTKGERQECTVATRIYGPDCYGGEPFFAARDAADKEADEDDGYILSYVHDEKAGESKFLVMDAKSPHLDIVAEVKLPQRVPAGFHGLFVREIDFCKL
*************************************************************************SSVSTTTNVSAVILNTLNKLIKPKLQAQPLSLDPSRAFSNNLAPVDELHPTQCQVTQGSLPSCLEGAYIRNGPNPQYPPRSEPYSPFDGDGMLHCIKISQGQATFCSRYVKTYKYTIENTVGSPIVPSPFSSFSGPLAFLTRAGVLAARVLTGQLSINSGFGLANTSLAFLGNRLLALYEGDLPYAVRLTSNGDIETLGRCDLDGKLVMNMTAHPKKDPETGEMFAFRYSPMPPFVTYFWFDANGEKQPDVHIKMPGQWLRHPPLMHDFAITKRYAIFVDTQVQAYGMEMILRREPLLHSDPTKVSRIGVMPRYAKNSSQMRWFDAPGLNNIHAVNAWDEEDGNVIVMVAPNILSVEQVFERMELIHCLMEKVRIDLRTGVVSRHPISARNLDMAVINPGYVAKKNRYVYAAVGDPMPKMTGLVKLDLTKGERQECTVATRIYGPDCYGGEPFFAARDAADKEADEDDGYILSYVHDEKAGESKFLVMDAKSPHLDIVAEVKLPQRVPAGFHGLFVREID****
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MDALSSSFMSTLPPQIQRLHYSPTKTKAPLLLPSSSSSSRTNNVIVSTTSPPKKPETTEENNKQQTKTTQKPSSSVSTTTNVSAVILNTLNKLIKPKLQAQPLSLDPSRAFSNNLAPVDELHPTQCQVTQGSLPSCLEGAYIRNGPNPQYPPRSEPYSPFDGDGMLHCIKISQGQATFCSRYVKTYKYTIENTVGSPIVPSPFSSFSGPLAFLTRAGVLAARVLTGQLSINSGFGLANTSLAFLGNRLLALYEGDLPYAVRLTSNGDIETLGRCDLDGKLVMNMTAHPKKDPETGEMFAFRYSPMPPFVTYFWFDANGEKQPDVHIKMPGQWLRHPPLMHDFAITKRYAIFVDTQVQAYGMEMILRREPLLHSDPTKVSRIGVMPRYAKNSSQMRWFDAPGLNNIHAVNAWDEEDGNVIVMVAPNILSVEQVFERMELIHCLMEKVRIDLRTGVVSRHPISARNLDMAVINPGYVAKKNRYVYAAVGDPMPKMTGLVKLDLTKGERQECTVATRIYGPDCYGGEPFFAARDAADKEADEDDGYILSYVHDEKAGESKFLVMDAKSPHLDIVAEVKLPQRVPAGFHGLFVREIDFCKL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query597 2.2.26 [Sep-21-2011]
O49675595 Probable carotenoid cleav yes no 0.929 0.932 0.547 0.0
Q84K96369 Zeaxanthin 7,8(7',8')-cle N/A no 0.606 0.981 0.508 1e-103
Q9C6Z1589 Probable 9-cis-epoxycarot no no 0.793 0.804 0.400 1e-100
Q9M6E8615 9-cis-epoxycarotenoid dio N/A no 0.795 0.772 0.375 4e-95
Q9LRR7599 9-cis-epoxycarotenoid dio no no 0.805 0.803 0.372 3e-94
O49505583 9-cis-epoxycarotenoid dio no no 0.792 0.811 0.371 4e-94
O24592604 9-cis-epoxycarotenoid dio N/A no 0.807 0.798 0.372 2e-90
Q8LP17541 Carotenoid 9,10(9',10')-c N/A no 0.795 0.878 0.388 2e-90
Q9M9F5657 9-cis-epoxycarotenoid dio no no 0.943 0.856 0.335 3e-90
O65572538 Carotenoid 9,10(9',10')-c no no 0.830 0.921 0.376 8e-90
>sp|O49675|CCD4_ARATH Probable carotenoid cleavage dioxygenase 4, chloroplastic OS=Arabidopsis thaliana GN=CCD4 PE=1 SV=1 Back     alignment and function desciption
 Score =  657 bits (1695), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 327/597 (54%), Positives = 424/597 (71%), Gaps = 42/597 (7%)

Query: 14  PQIQRLHYSPTKTKAPLLLPSSSSS---------SRTNNVIVSTTSPPK-KPETTEENNK 63
           P + R++ +  + ++P+  PS ++          +RTN+ +VS  SPPK +PE T     
Sbjct: 28  PTLLRINSAVVEERSPITNPSDNNDRRNKPKTLHNRTNHTLVS--SPPKLRPEMT----- 80

Query: 64  QQTKTTQKPSSSVSTTTNVSAVILNTLNKLIKPKLQAQPLSLDPSRAFSNNLAPV-DELH 122
                           T +   + + +N  I P   ++P S+DP    S+N APV DEL 
Sbjct: 81  --------------LATALFTTVEDVINTFIDPP--SRP-SVDPKHVLSDNFAPVLDELP 123

Query: 123 PTQCQVTQGSLPSCLEGAYIRNGPNPQYPPRSEPYSPFDGDGMLHCIKISQGQATFCSRY 182
           PT C++  G+LP  L GAYIRNGPNPQ+ PR  PY  FDGDGMLH IKI  G+AT CSRY
Sbjct: 124 PTDCEIIHGTLPLSLNGAYIRNGPNPQFLPRG-PYHLFDGDGMLHAIKIHNGKATLCSRY 182

Query: 183 VKTYKYTIENTVGSPIVPSPFSSFSGPLAFLTRAGVLAARVLTGQLSINSGFGLANTSLA 242
           VKTYKY +E   G+P++P+ FS F+G  A + R  + AARVLTGQ +  +G GLANTSLA
Sbjct: 183 VKTYKYNVEKQTGAPVMPNVFSGFNGVTASVARGALTAARVLTGQYNPVNGIGLANTSLA 242

Query: 243 FLGNRLLALYEGDLPYAVRLTSNGDIETLGRCDLDGKLVMNMTAHPKKDPETGEMFAFRY 302
           F  NRL AL E DLPYAVRLT +GDIET+GR D DGKL M+MTAHPK DP TGE FAFRY
Sbjct: 243 FFSNRLFALGESDLPYAVRLTESGDIETIGRYDFDGKLAMSMTAHPKTDPITGETFAFRY 302

Query: 303 SPMPPFVTYFWFDANGEKQPDVHIKMPGQWLRHPPLMHDFAITKRYAIFVDTQV--QAYG 360
            P+PPF+TYF FD+ G+KQ DV    P   +  P  +HDFAITKR+AIF + Q+  +   
Sbjct: 303 GPVPPFLTYFRFDSAGKKQRDV----PIFSMTSPSFLHDFAITKRHAIFAEIQLGMRMNM 358

Query: 361 MEMILRREPLLHSDPTKVSRIGVMPRYAKNSSQMRWFDAPGLNNIHAVNAWDEEDGNVIV 420
           ++++L     + +D  K  R+GV+P+YA + S+M+WF+ PG N IHA+NAWDE+DGN +V
Sbjct: 359 LDLVLEGGSPVGTDNGKTPRLGVIPKYAGDESEMKWFEVPGFNIIHAINAWDEDDGNSVV 418

Query: 421 MVAPNILSVEQVFERMELIHCLMEKVRIDLRTGVVSRHPISARNLDMAVINPGYVAKKNR 480
           ++APNI+S+E   ERM+L+H L+EKV+IDL TG+V RHPISARNLD AVINP ++ + +R
Sbjct: 419 LIAPNIMSIEHTLERMDLVHALVEKVKIDLVTGIVRRHPISARNLDFAVINPAFLGRCSR 478

Query: 481 YVYAAVGDPMPKMTGLVKLDLTKGERQECTVATRIYGPDCYGGEPFFAARDAADKEADED 540
           YVYAA+GDPMPK++G+VKLD++KG+R +CTVA R+YG  CYGGEPFF ARD  + EA+ED
Sbjct: 479 YVYAAIGDPMPKISGVVKLDVSKGDRDDCTVARRMYGSGCYGGEPFFVARDPGNPEAEED 538

Query: 541 DGYILSYVHDEKAGESKFLVMDAKSPHLDIVAEVKLPQRVPAGFHGLFVREIDFCKL 597
           DGY+++YVHDE  GESKFLVMDAKSP L+IVA V+LP+RVP GFHGLFV+E D  KL
Sbjct: 539 DGYVVTYVHDEVTGESKFLVMDAKSPELEIVAAVRLPRRVPYGFHGLFVKESDLNKL 595
May be involved in carotenoid cleavage.
Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 1EC: 4EC: .EC: 9EC: 9EC: .EC: -
>sp|Q84K96|ZCD_CROSA Zeaxanthin 7,8(7',8')-cleavage dioxygenase, chromoplast OS=Crocus sativus GN=ZCD PE=1 SV=1 Back     alignment and function description
>sp|Q9C6Z1|NCED5_ARATH Probable 9-cis-epoxycarotenoid dioxygenase NCED5, chloroplastic OS=Arabidopsis thaliana GN=NCED5 PE=1 SV=1 Back     alignment and function description
>sp|Q9M6E8|NCED1_PHAVU 9-cis-epoxycarotenoid dioxygenase NCED1, chloroplastic OS=Phaseolus vulgaris GN=NCED1 PE=2 SV=1 Back     alignment and function description
>sp|Q9LRR7|NCED3_ARATH 9-cis-epoxycarotenoid dioxygenase NCED3, chloroplastic OS=Arabidopsis thaliana GN=NCED3 PE=2 SV=1 Back     alignment and function description
>sp|O49505|NCED2_ARATH 9-cis-epoxycarotenoid dioxygenase NCED2, chloroplastic OS=Arabidopsis thaliana GN=NCED2 PE=2 SV=1 Back     alignment and function description
>sp|O24592|NCED1_MAIZE 9-cis-epoxycarotenoid dioxygenase 1, chloroplastic OS=Zea mays GN=VP14 PE=1 SV=2 Back     alignment and function description
>sp|Q8LP17|CCD1_PEA Carotenoid 9,10(9',10')-cleavage dioxygenase 1 OS=Pisum sativum GN=CCD1 PE=2 SV=1 Back     alignment and function description
>sp|Q9M9F5|NCED9_ARATH 9-cis-epoxycarotenoid dioxygenase NCED9, chloroplastic OS=Arabidopsis thaliana GN=NCED9 PE=2 SV=1 Back     alignment and function description
>sp|O65572|CCD1_ARATH Carotenoid 9,10(9',10')-cleavage dioxygenase 1 OS=Arabidopsis thaliana GN=CCD1 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query597
83628262603 carotenoid cleavage dioxygenase 4a [Citr 0.876 0.867 0.641 0.0
255557829618 9-cis-epoxycarotenoid dioxygenase, putat 0.969 0.936 0.576 0.0
224083508507 predicted protein [Populus trichocarpa] 0.842 0.992 0.653 0.0
224146522589 predicted protein [Populus trichocarpa] 0.842 0.853 0.651 0.0
118488939507 unknown [Populus trichocarpa x Populus d 0.842 0.992 0.647 0.0
225427589599 PREDICTED: probable carotenoid cleavage 0.944 0.941 0.568 0.0
163881526563 carotenoid cleavage dioxygenase 4 [Malus 0.862 0.914 0.616 0.0
387763754599 carotenoid cleavage dioxygenase 4a, part 0.944 0.941 0.566 0.0
312282509602 unnamed protein product [Thellungiella h 0.953 0.945 0.553 0.0
337255727601 carotenoid cleavage dioxygenase 4 [Nicot 0.979 0.973 0.558 0.0
>gi|83628262|gb|ABC26011.1| carotenoid cleavage dioxygenase 4a [Citrus clementina] Back     alignment and taxonomy information
 Score =  709 bits (1831), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 345/538 (64%), Positives = 413/538 (76%), Gaps = 15/538 (2%)

Query: 65  QTKTTQKPSSSVSTTTNVSAVILNT----LNKLIKPKLQAQPLSLDPSRAFSNNLAPVDE 120
           +T+++  P      T  +  +ILN     +N  I P L+    S+DP    S+N APVDE
Sbjct: 75  RTQSSYLPKKRAEPT--IPTIILNACDDIINNFIDPPLK---YSVDPRHVLSDNFAPVDE 129

Query: 121 LHPTQCQVTQGSLPSCLEGAYIRNGPNPQYPPRSEPYSPFDGDGMLHCIKISQGQATFCS 180
           L PT+C+V QGSLPSCL+GAYIRNGPNPQY PR  PY  FDGDGMLH IKIS+G+AT CS
Sbjct: 130 LPPTECEVVQGSLPSCLDGAYIRNGPNPQYLPRG-PYHLFDGDGMLHSIKISRGRATLCS 188

Query: 181 RYVKTYKYTIENTVGSPIVPSPFSSFSGPLAFLTRAGVLAARVLTGQLSINSGFGLANTS 240
           RYV+TYKYTIEN  GSPI+P+ FS F+G  A   R  + AAR+L GQ +  +G GLANT+
Sbjct: 189 RYVRTYKYTIENEAGSPILPNVFSGFNGLTASAARGALSAARLLAGQFNPVNGIGLANTN 248

Query: 241 LAFLGNRLLALYEGDLPYAVRLTSNGDIETLGRCDLDGKLVMNMTAHPKKDPETGEMFAF 300
           LAF GNRL AL E DLPYA+RLT NGDIET+GR D DGKL M+MTAHPK D +TGE FAF
Sbjct: 249 LAFFGNRLYALGESDLPYAIRLTPNGDIETIGRHDFDGKLAMSMTAHPKLDSDTGEAFAF 308

Query: 301 RYSPMPPFVTYFWFDANGEKQPDVHIKMPGQWLRHPPLMHDFAITKRYAIFVDTQVQAYG 360
           RY P+PPF+TYF FDANG+KQP+V    P   +  P  +HDFAITK+YA+FVD Q+    
Sbjct: 309 RYGPVPPFLTYFRFDANGKKQPNV----PIFSMTRPSFLHDFAITKKYAVFVDIQIGMNP 364

Query: 361 MEMILRREPLLHSDPTKVSRIGVMPRYAKNSSQMRWFDAPGLNNIHAVNAWDEEDGNVIV 420
           MEMI      + +DP KV RIG++PRYA + SQMRWF+ PG N IHA+NAWDEEDGN +V
Sbjct: 365 MEMIFGGGSPVGADPAKVCRIGIIPRYATDESQMRWFEVPGFNIIHAINAWDEEDGNAVV 424

Query: 421 MVAPNILSVEQVFERMELIHCLMEKVRIDLRTGVVSRHPISARNLDMAVINPGYVAKKNR 480
           MVAPNILSVE   +R +L+H L+EKVRIDLRTG+V+R P+SARNLD  VINP Y+AKK+R
Sbjct: 425 MVAPNILSVEHTLDRTDLVHALVEKVRIDLRTGIVTRRPMSARNLDFGVINPAYMAKKSR 484

Query: 481 YVYAAVGDPMPKMTGLVKLDLTKG-ERQECTVATRIYGPDCYGGEPFFAARDAADKEADE 539
           YVYAAVGDPMPK++G+VKLD++KG ER++C VATRIYGP CYGGEPFF ARD  + E +E
Sbjct: 485 YVYAAVGDPMPKISGVVKLDVSKGDERRDCIVATRIYGPGCYGGEPFFVARDPENPETEE 544

Query: 540 DDGYILSYVHDEKAGESKFLVMDAKSPHLDIVAEVKLPQRVPAGFHGLFVREIDFCKL 597
           DDGY++SYVHDE  GESKFLVMDAKSP LDIVA VKLP+RVP GFHGLFVR+ +  KL
Sbjct: 545 DDGYVVSYVHDENTGESKFLVMDAKSPRLDIVAAVKLPRRVPYGFHGLFVRQAELDKL 602

Source: Citrus clementina

Species: Citrus clementina

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255557829|ref|XP_002519944.1| 9-cis-epoxycarotenoid dioxygenase, putative [Ricinus communis] gi|223540990|gb|EEF42548.1| 9-cis-epoxycarotenoid dioxygenase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224083508|ref|XP_002307055.1| predicted protein [Populus trichocarpa] gi|222856504|gb|EEE94051.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224146522|ref|XP_002326037.1| predicted protein [Populus trichocarpa] gi|222862912|gb|EEF00419.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|118488939|gb|ABK96278.1| unknown [Populus trichocarpa x Populus deltoides] Back     alignment and taxonomy information
>gi|225427589|ref|XP_002268404.1| PREDICTED: probable carotenoid cleavage dioxygenase 4, chloroplastic-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|163881526|gb|ABY47995.1| carotenoid cleavage dioxygenase 4 [Malus x domestica] Back     alignment and taxonomy information
>gi|387763754|gb|AFJ94675.1| carotenoid cleavage dioxygenase 4a, partial [Vitis vinifera] Back     alignment and taxonomy information
>gi|312282509|dbj|BAJ34120.1| unnamed protein product [Thellungiella halophila] Back     alignment and taxonomy information
>gi|337255727|gb|AEI61930.1| carotenoid cleavage dioxygenase 4 [Nicotiana tabacum] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query597
TAIR|locus:2134796595 NCED4 "nine-cis-epoxycarotenoi 0.840 0.843 0.573 2.4e-156
TAIR|locus:2202492589 NCED5 "nine-cis-epoxycarotenoi 0.795 0.806 0.379 1.6e-86
TAIR|locus:2091652599 NCED3 "nine-cis-epoxycarotenoi 0.804 0.801 0.368 4.9e-85
TAIR|locus:2124489583 NCED2 "nine-cis-epoxycarotenoi 0.792 0.811 0.356 2.9e-80
TAIR|locus:2087418538 CCD1 "carotenoid cleavage diox 0.822 0.912 0.375 4.2e-79
TAIR|locus:2032085657 NCED9 "nine-cis-epoxycarotenoi 0.797 0.724 0.346 3e-78
TAIR|locus:2093751577 NCED6 "nine-cis-epoxycarotenoi 0.805 0.833 0.350 2.7e-75
UNIPROTKB|Q53353485 Q53353 "Lignostilbene-alpha,be 0.313 0.385 0.288 3e-22
ASPGD|ASPL0000067272555 AN7062 [Emericella nidulans (t 0.288 0.309 0.296 2.8e-21
UNIPROTKB|O06785501 MT0683 "Carotenoid cleavage ox 0.487 0.580 0.254 3.8e-19
TAIR|locus:2134796 NCED4 "nine-cis-epoxycarotenoid dioxygenase 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1524 (541.5 bits), Expect = 2.4e-156, P = 2.4e-156
 Identities = 294/513 (57%), Positives = 368/513 (71%)

Query:    88 NTLNKLIKPKLQAQPLSLDPSRAFSNNLAPV-DELHPTQCQVTQGSLPSCLEGAYIRNGP 146
             + +N  I P   ++P S+DP    S+N APV DEL PT C++  G+LP  L GAYIRNGP
Sbjct:    91 DVINTFIDPP--SRP-SVDPKHVLSDNFAPVLDELPPTDCEIIHGTLPLSLNGAYIRNGP 147

Query:   147 NPQYPPRSEPYSPFDGDGMLHCIKISQGQATFCSRYVKTYKYTIENTXXXXXXXXXXXXX 206
             NPQ+ PR  PY  FDGDGMLH IKI  G+AT CSRYVKTYKY +E               
Sbjct:   148 NPQFLPRG-PYHLFDGDGMLHAIKIHNGKATLCSRYVKTYKYNVEKQTGAPVMPNVFSGF 206

Query:   207 XXXLAFLTRAGVLAARVLTGQLSINSGFGLANTSLAFLGNRLLALYEGDLPYAVRLTSNG 266
                 A + R  + AARVLTGQ +  +G GLANTSLAF  NRL AL E DLPYAVRLT +G
Sbjct:   207 NGVTASVARGALTAARVLTGQYNPVNGIGLANTSLAFFSNRLFALGESDLPYAVRLTESG 266

Query:   267 DIETLGRCDLDGKLVMNMTAHPKKDPETGEMFAFRYSPMPPFVTYFWFDANGEKQPDVHI 326
             DIET+GR D DGKL M+MTAHPK DP TGE FAFRY P+PPF+TYF FD+ G+KQ DV I
Sbjct:   267 DIETIGRYDFDGKLAMSMTAHPKTDPITGETFAFRYGPVPPFLTYFRFDSAGKKQRDVPI 326

Query:   327 KMPGQWLRHPPLMHDFAITKRYAIFVDTQV--QAYGMEMILRREPLLHSDPTKVSRIGVM 384
                   +  P  +HDFAITKR+AIF + Q+  +   ++++L     + +D  K  R+GV+
Sbjct:   327 FS----MTSPSFLHDFAITKRHAIFAEIQLGMRMNMLDLVLEGGSPVGTDNGKTPRLGVI 382

Query:   385 PRYAKNSSQMRWFDAPGLNNIHAVNAWDEEDGNVIVMVAPNILSVEQVFERMELIHCLME 444
             P+YA + S+M+WF+ PG N IHA+NAWDE+DGN +V++APNI+S+E   ERM+L+H L+E
Sbjct:   383 PKYAGDESEMKWFEVPGFNIIHAINAWDEDDGNSVVLIAPNIMSIEHTLERMDLVHALVE 442

Query:   445 KVRIDLRTGVVSRHPISARNLDMAVINPGYVAKKNRYVYAAVGDPMPKMTGLVKLDLTKG 504
             KV+IDL TG+V RHPISARNLD AVINP ++ + +RYVYAA+GDPMPK++G+VKLD++KG
Sbjct:   443 KVKIDLVTGIVRRHPISARNLDFAVINPAFLGRCSRYVYAAIGDPMPKISGVVKLDVSKG 502

Query:   505 ERQECTVATRIYGPDCYGGEPFFXXXXXXXXXXXXXXGYILSYVHDEKAGESKFLVMDAK 564
             +R +CTVA R+YG  CYGGEPFF              GY+++YVHDE  GESKFLVMDAK
Sbjct:   503 DRDDCTVARRMYGSGCYGGEPFFVARDPGNPEAEEDDGYVVTYVHDEVTGESKFLVMDAK 562

Query:   565 SPHLDIVAEVKLPQRVPAGFHGLFVREIDFCKL 597
             SP L+IVA V+LP+RVP GFHGLFV+E D  KL
Sbjct:   563 SPELEIVAAVRLPRRVPYGFHGLFVKESDLNKL 595
GO:0009507 "chloroplast" evidence=ISM;IDA
GO:0005515 "protein binding" evidence=IPI
GO:0010287 "plastoglobule" evidence=IDA
GO:0009718 "anthocyanin-containing compound biosynthetic process" evidence=RCA
TAIR|locus:2202492 NCED5 "nine-cis-epoxycarotenoid dioxygenase 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2091652 NCED3 "nine-cis-epoxycarotenoid dioxygenase 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2124489 NCED2 "nine-cis-epoxycarotenoid dioxygenase 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2087418 CCD1 "carotenoid cleavage dioxygenase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2032085 NCED9 "nine-cis-epoxycarotenoid dioxygenase 9" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2093751 NCED6 "nine-cis-epoxycarotenoid dioxygenase 6" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q53353 Q53353 "Lignostilbene-alpha,beta-dioxygenase isozyme I" [Sphingomonas paucimobilis (taxid:13689)] Back     alignment and assigned GO terms
ASPGD|ASPL0000067272 AN7062 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
UNIPROTKB|O06785 MT0683 "Carotenoid cleavage oxygenase" [Mycobacterium tuberculosis (taxid:1773)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
O49675CCD4_ARATH1, ., 1, 4, ., 9, 9, ., -0.54770.92960.9327yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer1.14.990.766

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
fgenesh4_pm.C_LG_V000037
hypothetical protein (507 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query597
pfam03055469 pfam03055, RPE65, Retinal pigment epithelial membr 1e-159
PLN02258590 PLN02258, PLN02258, 9-cis-epoxycarotenoid dioxygen 1e-152
PLN02491545 PLN02491, PLN02491, carotenoid 9,10(9',10')-cleava 1e-109
COG3670490 COG3670, COG3670, Lignostilbene-alpha,beta-dioxyge 3e-96
PLN02969610 PLN02969, PLN02969, 9-cis-epoxycarotenoid dioxygen 3e-19
>gnl|CDD|217340 pfam03055, RPE65, Retinal pigment epithelial membrane protein Back     alignment and domain information 
 Score =  464 bits (1197), Expect = e-159
 Identities = 185/499 (37%), Positives = 246/499 (49%), Gaps = 53/499 (10%)

Query: 114 NLAPV-DELHPTQCQVTQGSLPSCLEGAYIRNGPNPQYPPRSEPYSPFDGDGMLHCIKIS 172
           N APV +EL   +    +G +P+ L G   RNGP P        +  FDGDGMLH  +  
Sbjct: 1   NFAPVREELPDAEDLEVEGEIPADLNGTLYRNGPGPLERGGFRYHHWFDGDGMLHAFRFE 60

Query: 173 QGQATFCSRYVKTYKYTIENTVGSPIVPSPFSSFSGPLAFLTRAGVLAARVLTGQLSINS 232
            G+ T+ +R+V+T  Y  E   G  + P  F +                           
Sbjct: 61  DGRVTYRNRFVRTEGYKAERAAGRRLYPGEFGTLKP-----------DPCKNIFPRVPGK 109

Query: 233 GFGLANTSLAFLGNRLLALYEGDLPYAVRLTSNGDIETLGRCDLDGKLVMN--MTAHPKK 290
              +ANT++ + G RLLAL+E  LPY +       +ETLGR D  GKL      TAHPK 
Sbjct: 110 LKNVANTNVVYHGGRLLALWEAGLPYRLDP---ETLETLGRYDFGGKLKPGPPFTAHPKV 166

Query: 291 DPETGEMFAFRYS--PMPPFVTYFWFDANGEKQPDVHIKMPGQWLRHPPLMHDFAITKRY 348
           DP TGE+  F  S  P PP++TY+  DA+G+   +V I      L  P ++HDFAIT+ Y
Sbjct: 167 DPVTGELVNFGLSLGPKPPYLTYYEVDADGKLVREVPI----FSLPGPSMIHDFAITENY 222

Query: 349 AIFVDTQVQAYGMEMILR--REPLLHSDPTKVSRIGVMPRYAKNSSQMRWFDAPGLNNIH 406
            IF D  +  +    +L   R   L  DP K +R GV+PR     S +RWF+AP     H
Sbjct: 223 VIFPDLPL-VFDPLRLLLGGRADPLRWDPEKPTRFGVIPRRGG-KSDVRWFEAPPCFVFH 280

Query: 407 AVNAWDEEDGNVIVMVAPNILSVEQVFERM-----------ELIHCLMEKVRIDLRTGV- 454
             NAW  E+G  IV+ A      + +               +     + + R+DL+TG  
Sbjct: 281 TANAW--EEGGEIVLDACRYDDPDFLDPFYLDNLRPDAFADKKPRSRLTRWRLDLKTGGD 338

Query: 455 VSRHPISARNLDMAVINPGYVAKKNRYVYAAVGDPMPK----MTGLVKLDLTKGERQECT 510
           V+   +  R  +   INP YV +K RYVY A  DP P       GLVK+DL  GE Q   
Sbjct: 339 VTEEVLLDRPCEFPRINPRYVGRKYRYVYMAAADPRPPGSGPFDGLVKVDLETGEVQ--- 395

Query: 511 VATRIYGPDCYGGEPFFAARDAADKEADEDDGYILSYVHDEKAGESKFLVMDAKSPHLDI 570
                +GP CY GEP F  R  A   ADEDDG++LS V+DE  G S+ L++DAK      
Sbjct: 396 --VWSFGPGCYPGEPIFVPRPGA---ADEDDGWLLSVVYDEDTGRSELLILDAKDLTEGP 450

Query: 571 VAEVKLPQRVPAGFHGLFV 589
           VA V+LP RVP GFHG +V
Sbjct: 451 VARVELPHRVPYGFHGTWV 469

This family represents a retinal pigment epithelial membrane receptor which is abundantly expressed in retinal pigment epithelium, and binds plasma retinal binding protein. The family also includes the sequence related neoxanthin cleavage enzyme in plants and lignostilbene-alpha,beta-dioxygenase in bacteria. Length = 469
>gnl|CDD|215145 PLN02258, PLN02258, 9-cis-epoxycarotenoid dioxygenase NCED Back     alignment and domain information
>gnl|CDD|215271 PLN02491, PLN02491, carotenoid 9,10(9',10')-cleavage dioxygenase Back     alignment and domain information
>gnl|CDD|226196 COG3670, COG3670, Lignostilbene-alpha,beta-dioxygenase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information
>gnl|CDD|215523 PLN02969, PLN02969, 9-cis-epoxycarotenoid dioxygenase Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 597
PLN02258590 9-cis-epoxycarotenoid dioxygenase NCED 100.0
PLN02491545 carotenoid 9,10(9',10')-cleavage dioxygenase 100.0
COG3670490 Lignostilbene-alpha,beta-dioxygenase and related e 100.0
PF03055486 RPE65: Retinal pigment epithelial membrane protein 100.0
PLN02969610 9-cis-epoxycarotenoid dioxygenase 100.0
KOG1285582 consensus Beta, beta-carotene 15,15'-dioxygenase a 100.0
KOG1285582 consensus Beta, beta-carotene 15,15'-dioxygenase a 100.0
PF06433342 Me-amine-dh_H: Methylamine dehydrogenase heavy cha 91.58
>PLN02258 9-cis-epoxycarotenoid dioxygenase NCED Back     alignment and domain information 
Probab=100.00  E-value=7.8e-138  Score=1152.90  Aligned_cols=542  Identities=37%  Similarity=0.706  Sum_probs=479.3

Q ss_pred             CCCCCcceeeeeeccCCCCCCC--Cccccccccccc--CCCCCCCcccccchHHHHHhHHHHhh------ccccccCCCC
Q 044992           35 SSSSSRTNNVIVSTTSPPKKPE--TTEENNKQQTKT--TQKPSSSVSTTTNVSAVILNTLNKLI------KPKLQAQPLS  104 (597)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~  104 (597)
                      ....+++.++++.+++|+.-+-  .........+++  .+.....|++.|++|+++||++|+.+      .+||   +++
T Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~  108 (590)
T PLN02258         32 PRPRRRKPSASSLLHTPSILPLPKLSSPSPPSVTLPPAATTQTPQLNPLQRAAAAALDAVESALVSHLERQHPL---PKT  108 (590)
T ss_pred             cccCCCCcccccccCCCCCCCCCccCCCCCccccccccccCCccccCcchhhHHHHHHHHHHHHhhhccccCCC---CCC
Confidence            3344555677777777762111  111111111111  11122357899999999999999942      3678   999


Q ss_pred             CCccccccCCCcCccccCCCccceeeccCCCCCcceEEeecCCCCCCCCCCCCCCCCCCCcEEEEEEeCCeEEEEEEeec
Q 044992          105 LDPSRAFSNNLAPVDELHPTQCQVTQGSLPSCLEGAYIRNGPNPQYPPRSEPYSPFDGDGMLHCIKISQGQATFCSRYVK  184 (597)
Q Consensus       105 ~~p~~~l~gnfaPv~E~~~~~~~~V~G~IP~~L~Gt~~RNGPnp~~~p~~~~~H~FDGdGMlha~~f~~G~a~y~~RfV~  184 (597)
                      .||+++|+|||+||.|+++..++.|+|+||+||+|+||||||||+|.+.+ ++||||||||||+|+|++|+|+|+|||||
T Consensus       109 ~~~~~~l~g~faPv~ee~~~~~l~V~G~IP~~L~Gty~RNGPnp~f~p~~-~~H~FDGDGMvhav~f~dG~a~y~~RfVr  187 (590)
T PLN02258        109 ADPAVQIAGNFAPVPEQPVRHNLPVTGRIPDCIDGVYVRNGANPLFEPVA-GHHLFDGDGMVHAVRIGNGSASYACRFTE  187 (590)
T ss_pred             CCcceeccCCCcCccccCCcccceEEeeCCCCCCeEEEEeCCCCCCCCCC-CCccccCCceEEEEEECCCeEEEEeeeec
Confidence            99999999999999888777788999999999999999999999998766 89999999999999999999999999999


Q ss_pred             cchhhhhhccCCCCCCCCCCCCCCCccchhhhhhhHHhHhhccccCCCCCCcceeEEEEeCCEEEEEEeCCccEEEecCC
Q 044992          185 TYKYTIENTVGSPIVPSPFSSFSGPLAFLTRAGVLAARVLTGQLSINSGFGLANTSLAFLGNRLLALYEGDLPYAVRLTS  264 (597)
Q Consensus       185 T~~~~~E~~~gr~~~~~~~~~~~g~~~~~~~~~~~~~r~~~g~~~~~~~~~~ANT~v~~~~grLlAl~E~g~Py~ld~~~  264 (597)
                      |++|++|+++||++|++.++++++. .++.|..+++.|.+.+.++..+++|+|||||++|+||||||||+|+||+|++++
T Consensus       188 T~~~~~E~~agr~l~~~~~g~~~~~-~g~~r~~~~~~r~~~~~~d~~~~~~~ANT~vv~~~grLlAL~E~g~Py~l~~d~  266 (590)
T PLN02258        188 TNRLVQERALGRPVFPKAIGELHGH-SGIARLMLFYARGLFGLVDASRGTGVANAGLVYFNGRLLAMSEDDLPYQVRITG  266 (590)
T ss_pred             chhHHHHHhcCCccccccccccccc-ccccccchhhccccccccccccccCCCceeEEEECCEEEEEEcCCCceEecCCC
Confidence            9999999999999999888888766 777888888888877888777788999999999999999999999999999988


Q ss_pred             CCCccceeeccCCCccccCccCCCcccCCCCcEEEEEeccC-CCeEEEEEEcCCCCccceEEEeeCCccCCCCCcceeee
Q 044992          265 NGDIETLGRCDLDGKLVMNMTAHPKKDPETGEMFAFRYSPM-PPFVTYFWFDANGEKQPDVHIKMPGQWLRHPPLMHDFA  343 (597)
Q Consensus       265 ~~tLeTlG~~d~~g~l~~~ftAHPk~DP~tGel~~f~~~~~-~p~~~~~~~d~~G~~~~~~~i~l~~~~~~~p~~iHDfa  343 (597)
                      ++||||+|++||+|+|..+||||||+||.|||||+|+|+.. +|+++||++|++|++.+.++|++     +.|+||||||
T Consensus       267 ~~TLeT~G~~df~g~l~~~ftAHPKvDP~TGel~~f~y~~~~~p~l~~~~~d~~G~~~~~~~i~l-----p~p~~~HDFa  341 (590)
T PLN02258        267 DGDLETVGRYDFDGQLDSSMIAHPKVDPVTGELFALSYDVVKKPYLKYFRFSPDGEKSPDVEIPL-----DQPTMMHDFA  341 (590)
T ss_pred             CCCcccCcccccCCccCcccccCceEcCCCCeEEEEEEeccCCCcEEEEEECCCCCEEeeEEeeC-----CCCcccccee
Confidence            88999999999999998899999999999999999999974 59999999999999999999998     7899999999


Q ss_pred             cCCcEEEEEecceeccHHHHHhcCCCceeeCCCCCcEEEEeeCCCCCCCceEEEecCCcceeeecceeecCCCcEEEEEe
Q 044992          344 ITKRYAIFVDTQVQAYGMEMILRREPLLHSDPTKVSRIGVMPRYAKNSSQMRWFDAPGLNNIHAVNAWDEEDGNVIVMVA  423 (597)
Q Consensus       344 iTenyvVf~d~p~~~~~~~m~~~g~~~~~~dp~~~tr~~VipR~~~~~~~v~w~e~p~~f~fH~~NA~Ee~dg~~Ivl~~  423 (597)
                      |||||+||+++|+++++.+|+ .|++++.||+++++|||||||++++.++++||++|+||+||++|||||+++++||+++
T Consensus       342 iTenY~Vf~d~Pl~~~~~~~~-~g~~~~~~d~~~~srfgVipR~~~~~~~irwfe~p~~f~fH~~NA~Ee~~~~~VVvd~  420 (590)
T PLN02258        342 ITENFVVIPDQQVVFKLSEMI-RGGSPVVYDKNKTSRFGVLPKNATDASEIQWVEVPDCFCFHLWNAWEEPETDEVVVIG  420 (590)
T ss_pred             ccCceEEEEccCceEcHHHHh-hCCCceEECCCCCcEEEEEECCCCCCCceEEEecCCcEEEecccccccCCCCeEEEEE
Confidence            999999999999999999998 7789999999999999999999877778999999999999999999987666899999


Q ss_pred             ecCCChHHHHHHh-hhccceEEEEEEeCCCCcEEEEEccC---CCCccceeCCCCCCCCCceEEEecCCCCCCCCceEEE
Q 044992          424 PNILSVEQVFERM-ELIHCLMEKVRIDLRTGVVSRHPISA---RNLDMAVINPGYVAKKNRYVYAAVGDPMPKMTGLVKL  499 (597)
Q Consensus       424 ~~~~~~~~~~~~~-~~~~~~l~r~ridl~tG~v~~~~L~~---~~~EfP~In~~~~Gr~~RY~Y~~~~~~~~~~~glvK~  499 (597)
                      |++.+.+.+++.. +.++++|+||||||+||+++++.|.+   .++|||+||++|.||+|||+|+++.++++++++|+|+
T Consensus       421 ~~~~~~~~~~~~~~~~~~~~L~r~ridl~tg~~~~~~l~~~~~~~~EFP~In~~~~Grk~Ry~Y~~~~~~~~~~~givK~  500 (590)
T PLN02258        421 SCMTPPDSIFNESDESLRSVLSEIRLNLRTGESTRRPIISGEQVNLEAGMVNRNLLGRKTRYAYLAIAEPWPKVSGFAKV  500 (590)
T ss_pred             ecccChhhhcccccccccceEEEEEEECCCCceeeeEeecCCCcccccceECHHHCCCccceEEEeccCCCCCCCeEEEE
Confidence            9988776665543 45678999999999999999888865   7999999999999999999999988888899999999


Q ss_pred             ecCCCcccceeEEEEEcCCCCCCCCcEEEeeCCCCCCCCCCCcEEEEEEEeCCCCceeEEEEeCCCCCCCeEEEEEcCCc
Q 044992          500 DLTKGERQECTVATRIYGPDCYGGEPFFAARDAADKEADEDDGYILSYVHDEKAGESKFLVMDAKSPHLDIVAEVKLPQR  579 (597)
Q Consensus       500 Dl~tg~~~~~~~~~~~~g~g~~~gEPvFVPr~~~~~~~~EDDGylls~V~d~~~~~Sel~VlDA~~~~~~pVA~v~LP~r  579 (597)
                      |+++|+     +..|++|++||+|||+||||++++  .+|||||||++|||+++++|+|+||||++  +++||+|+||+|
T Consensus       501 Dl~tg~-----~~~~~~g~g~~~gEPvFVPr~~~~--~~EDDGylls~V~d~~~~~SeL~IlDA~~--l~~VArv~LP~r  571 (590)
T PLN02258        501 DLSTGE-----VKKYIYGEGRYGGEPFFVPRGSGS--EAEDDGYILAFVHDEEKGKSELQVVNAVN--LELEATVKLPSR  571 (590)
T ss_pred             ECCCCc-----EEEEECCCCccccCCEeccCCCCC--cccCCcEEEEEEEECCCCceEEEEEeCCC--CcccEEEECCCC
Confidence            999998     688999999999999999999742  35999999999999999999999999999  557999999999


Q ss_pred             CCCCcccccccCccccc
Q 044992          580 VPAGFHGLFVREIDFCK  596 (597)
Q Consensus       580 VP~GFHG~fv~~~~l~~  596 (597)
                      |||||||+|++.+||++
T Consensus       572 VP~GFHG~wv~~~~l~~  588 (590)
T PLN02258        572 VPYGFHGTFISAEDLLK  588 (590)
T ss_pred             CCCcccccccCHHHHhh
Confidence            99999999999999964

>PLN02491 carotenoid 9,10(9',10')-cleavage dioxygenase Back     alignment and domain information
>COG3670 Lignostilbene-alpha,beta-dioxygenase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information
>PF03055 RPE65: Retinal pigment epithelial membrane protein; InterPro: IPR004294 Carotenoids such as beta-carotene, lycopene, lutein and beta-cryptoxanthine are produced in plants and certain bacteria, algae and fungi, where they function as accessory photosynthetic pigments and as scavengers of oxygen radicals for photoprotection Back     alignment and domain information
>PLN02969 9-cis-epoxycarotenoid dioxygenase Back     alignment and domain information
>KOG1285 consensus Beta, beta-carotene 15,15'-dioxygenase and related enzymes [Secondary metabolites biosynthesis, transport and catabolism] Back     alignment and domain information
>KOG1285 consensus Beta, beta-carotene 15,15'-dioxygenase and related enzymes [Secondary metabolites biosynthesis, transport and catabolism] Back     alignment and domain information
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query597
3npe_A529 Structure Of Vp14 In Complex With Oxygen Length = 5 2e-82
2biw_A490 Crystal Structure Of Apocarotenoid Cleavage Oxygena 2e-24
3fsn_A533 Crystal Structure Of Rpe65 At 2.14 Angstrom Resolut 1e-05
>pdb|3NPE|A Chain A, Structure Of Vp14 In Complex With Oxygen Length = 529 Back     alignment and structure 
Iteration: 1

 Score =  303 bits (775), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 179/507 (35%), Positives = 269/507 (53%), Gaps = 25/507 (4%)
Query: 91  NKLIKPKLQAQPLSLDPSRAFSNNLAPVDELHPTQCQVTQGSLPSCLEGAYIRNGPNPQY 150
           N L +P     P + DP+   + N APV E  P       G +P  ++G Y RNG NP +
Sbjct: 30  NVLERP--HGLPSTADPAVQIAGNFAPVGERPPVHELPVSGRIPPFIDGVYARNGANPCF 87
Query: 151 PPRSEPYSPFDGDGMLHCIKISQGQA-TFCSRYVKTYKYTIENTXXXXXXXXXXXXXXXX 209
            P +  +  FDGDGM+H ++I  G A ++  R+ +T +   E                  
Sbjct: 88  DPVAG-HHLFDGDGMVHALRIRNGAAESYACRFTETARLRQERAIGRPVFPKAIGELHGH 146
Query: 210 LAFLTRAGVLAARVLTGQLSINSGFGLANTSLAFLGNRLLALYEGDLPYAVRLTSNGDIE 269
            + + R  +  AR   G +  ++G G+AN  L +   RLLA+ E DLPY VR+  +GD+E
Sbjct: 147 -SGIARLALFYARAACGLVDPSAGTGVANAGLVYFNGRLLAMSEDDLPYHVRVADDGDLE 205
Query: 270 TLGRCDLDGKLVMNMTAHPKKDPETGEMFAFRYSPMP-PFVTYFWFDANGEKQPDVHIKM 328
           T+GR D DG+L   M AHPK DP TGE+ A  Y  +  P++ YF+F  +G K  DV I  
Sbjct: 206 TVGRYDFDGQLGCAMIAHPKLDPATGELHALSYDVIKRPYLKYFYFRPDGTKSDDVEIP- 264
Query: 329 PGQWLRHPPLMHDFAITKRYAIFVDTQVQAYGMEMILRREPLLHSDPTKVSRIGVMPRYA 388
               L  P ++HDFAIT+   +  D QV     EM+    P++  D  K SR GV+P++A
Sbjct: 265 ----LEQPTMIHDFAITENLVVVPDHQVVFKLQEMLRGGSPVV-LDAAKTSRFGVLPKHA 319
Query: 389 KNSSQMRWFDAPGLNNIHAVNAWDEEDGNVIVMVAPNILSVEQVF-ERMELIHCLMEKVR 447
            ++S+M W D P     H  NAW++E    +V++   +   + +F E  E +  ++ ++R
Sbjct: 320 ADASEMAWVDVPDCFCFHLWNAWEDEATGEVVVIGSCMTPADSIFNESDERLESVLTEIR 379
Query: 448 IDLRTGVVSRH----PISARNLDMAVINPGYVAKKNRYVYAAVGDPMPKMTGLVKLDLTK 503
           +D RTG  +R     P    NL++ ++N   + ++ RY Y AV +P PK++G  K+DL+ 
Sbjct: 380 LDARTGRSTRRAVLPPSQQVNLEVGMVNRNLLGRETRYAYLAVAEPWPKVSGFAKVDLST 439
Query: 504 GERQECTVATRIYGPDCYGGEP-FFXXXXXXXXXXXXXXGYILSYVHDEKAGESKFLVMD 562
           GE  +       YG   +GGEP F               GY+L++VHDE+AG S+ LV++
Sbjct: 440 GELTKFE-----YGEGRFGGEPCFVPMDPAAAHPRGEDDGYVLTFVHDERAGTSELLVVN 494
Query: 563 AKSPHLDIVAEVKLPQRVPAGFHGLFV 589
           A    L+  A V+LP RVP GFHG F+
Sbjct: 495 AADMRLE--ATVQLPSRVPFGFHGTFI 519
>pdb|2BIW|A Chain A, Crystal Structure Of Apocarotenoid Cleavage Oxygenase From Synechocystis, Native Enzyme Length = 490 Back     alignment and structure
>pdb|3FSN|A Chain A, Crystal Structure Of Rpe65 At 2.14 Angstrom Resolution Length = 533 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query597
3npe_A529 9-CIS-epoxycarotenoid dioxygenase 1, chloroplasti; 1e-149
2biw_A490 Apocarotenoid-cleaving oxygenase; non-heme iron, c 1e-143
3kvc_A533 Retinoid isomerohydrolase; 7-bladed beta-propeller 1e-113
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-06
>3npe_A 9-CIS-epoxycarotenoid dioxygenase 1, chloroplasti; seven blade beta propeller, abscisic acid, non iron, oxidoreductase; 3.20A {Zea mays} Length = 529 Back     alignment and structure
 Score =  440 bits (1132), Expect = e-149
 Identities = 186/542 (34%), Positives = 292/542 (53%), Gaps = 29/542 (5%)

Query: 60  ENNKQQTKTTQKPSSSVSTTTNVSAVILNTLNKLIKPKLQAQPLSLDPSRAFSNNLAPVD 119
           E  K+Q    Q+ +++      + A     +  +++      P + DP+   + N APV 
Sbjct: 3   EGGKKQLNLFQRAAAAA-----LDAFEEGFVANVLERP-HGLPSTADPAVQIAGNFAPVG 56

Query: 120 ELHPTQCQVTQGSLPSCLEGAYIRNGPNPQYPPRSEPYSPFDGDGMLHCIKISQGQA-TF 178
           E  P       G +P  ++G Y RNG NP + P +  +  FDGDGM+H ++I  G A ++
Sbjct: 57  ERPPVHELPVSGRIPPFIDGVYARNGANPCFDPVA-GHHLFDGDGMVHALRIRNGAAESY 115

Query: 179 CSRYVKTYKYTIENTVGSPIVPSPFSSFSGPLAFLTRAGVLAARVLTGQLSINSGFGLAN 238
             R+ +T +   E  +G P+ P          + + R  +  AR   G +  ++G G+AN
Sbjct: 116 ACRFTETARLRQERAIGRPVFPKAIGELH-GHSGIARLALFYARAACGLVDPSAGTGVAN 174

Query: 239 TSLAFLGNRLLALYEGDLPYAVRLTSNGDIETLGRCDLDGKLVMNMTAHPKKDPETGEMF 298
             L +   RLLA+ E DLPY VR+  +GD+ET+GR D DG+L   M AHPK DP TGE+ 
Sbjct: 175 AGLVYFNGRLLAMSEDDLPYHVRVADDGDLETVGRYDFDGQLGCAMIAHPKLDPATGELH 234

Query: 299 AFRYSPMP-PFVTYFWFDANGEKQPDVHIKMPGQWLRHPPLMHDFAITKRYAIFVDTQVQ 357
           A  Y  +  P++ YF+F  +G K  DV I +       P ++HDFAIT+   +  D QV 
Sbjct: 235 ALSYDVIKRPYLKYFYFRPDGTKSDDVEIPLE-----QPTMIHDFAITENLVVVPDHQVV 289

Query: 358 AYGMEMILRREPLLHSDPTKVSRIGVMPRYAKNSSQMRWFDAPGLNNIHAVNAWDEEDGN 417
            + ++ +LR    +  D  K SR GV+P++A ++S+M W D P     H  NAW++E   
Sbjct: 290 -FKLQEMLRGGSPVVLDAAKTSRFGVLPKHAADASEMAWVDVPDCFCFHLWNAWEDEATG 348

Query: 418 VIVMVAPNILSVEQVF-ERMELIHCLMEKVRIDLRTGVVSRHPI----SARNLDMAVINP 472
            +V++   +   + +F E  E +  ++ ++R+D RTG  +R  +       NL++ ++N 
Sbjct: 349 EVVVIGSCMTPADSIFNESDERLESVLTEIRLDARTGRSTRRAVLPPSQQVNLEVGMVNR 408

Query: 473 GYVAKKNRYVYAAVGDPMPKMTGLVKLDLTKGERQECTVATRIYGPDCYGGEPFFAARD- 531
             + ++ RY Y AV +P PK++G  K+DL+ GE          YG   +GGEP F   D 
Sbjct: 409 NLLGRETRYAYLAVAEPWPKVSGFAKVDLSTGELT-----KFEYGEGRFGGEPCFVPMDP 463

Query: 532 AADKEADEDDGYILSYVHDEKAGESKFLVMDAKSPHLDIVAEVKLPQRVPAGFHGLFVRE 591
           AA     EDDGY+L++VHDE+AG S+ LV++A    + + A V+LP RVP GFHG F+  
Sbjct: 464 AAAHPRGEDDGYVLTFVHDERAGTSELLVVNAA--DMRLEATVQLPSRVPFGFHGTFITG 521

Query: 592 ID 593
            +
Sbjct: 522 QE 523
>2biw_A Apocarotenoid-cleaving oxygenase; non-heme iron, carotenoid cleavage, retinal forma oxidoreductase, dioxygenase; HET: 3ON; 2.39A {Synechocystis SP} PDB: 2bix_A* Length = 490 Back     alignment and structure
>3kvc_A Retinoid isomerohydrolase; 7-bladed beta-propeller, monotopic membrane protein, sensory transduction, vision, isomerase, non-heme iron protein; 1.90A {Bos taurus} PDB: 3fsn_A Length = 533 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query597
3npe_A529 9-CIS-epoxycarotenoid dioxygenase 1, chloroplasti; 100.0
2biw_A490 Apocarotenoid-cleaving oxygenase; non-heme iron, c 100.0
3kvc_A533 Retinoid isomerohydrolase; 7-bladed beta-propeller 100.0
>3npe_A 9-CIS-epoxycarotenoid dioxygenase 1, chloroplasti; seven blade beta propeller, abscisic acid, non iron, oxidoreductase; 3.20A {Zea mays} Back     alignment and structure
Probab=100.00  E-value=5.8e-133  Score=1109.58  Aligned_cols=502  Identities=37%  Similarity=0.705  Sum_probs=459.4

Q ss_pred             CcccccchHHHHHhHHHHh----h---ccccccCCCCCCccccccCCCcCccccCCCccceeeccCCCCCcceEEeecCC
Q 044992           75 SVSTTTNVSAVILNTLNKL----I---KPKLQAQPLSLDPSRAFSNNLAPVDELHPTQCQVTQGSLPSCLEGAYIRNGPN  147 (597)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~----~---~~~~~~~~~~~~p~~~l~gnfaPv~E~~~~~~~~V~G~IP~~L~Gt~~RNGPn  147 (597)
                      .|+++|++|+++||++|++    +   ++||   ++++||+++|+|||+||.|++....+.|+|+||+||+|+|||||||
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~g~fapv~ee~~~~~l~V~G~IP~~L~Gt~~RNGpn   84 (529)
T 3npe_A            8 QLNLFQRAAAAALDAFEEGFVANVLERPHGL---PSTADPAVQIAGNFAPVGERPPVHELPVSGRIPPFIDGVYARNGAN   84 (529)
T ss_dssp             CCCSHHHHHHHHHHHHHHHTCCCCCCTTSCC---CTTTCHHHHTSGGGSCCCCEEEEESCCEEECCCTTCEEEEEECCBC
T ss_pred             CCChhHHHHHHHHHHHHHHHHhhhccccCCC---CCCCCccchhccCcccccccCCcccceEeecCCccCCceEEEecCC
Confidence            4788999999999999992    2   4678   9999999999999999977776666779999999999999999999


Q ss_pred             CCCCCCCCCCCCCCCCCcEEEEEEeCCeE-EEEEEeeccchhhhhhccCCCCCCCCCCCCCCCccchhhhhhhHHhHhhc
Q 044992          148 PQYPPRSEPYSPFDGDGMLHCIKISQGQA-TFCSRYVKTYKYTIENTVGSPIVPSPFSSFSGPLAFLTRAGVLAARVLTG  226 (597)
Q Consensus       148 p~~~p~~~~~H~FDGdGMlha~~f~~G~a-~y~~RfV~T~~~~~E~~~gr~~~~~~~~~~~g~~~~~~~~~~~~~r~~~g  226 (597)
                      |+|.+.. ++||||||||||+|+|++|+| +|+||||||++|++|+++|+++|++.++.+.+. +++.|....+.|...+
T Consensus        85 P~f~~~~-~~HwFDGdGmlh~~~f~~G~a~~y~nRfVrT~~~~~e~~agr~~~~~~~~~~~~~-~~~~r~~~~~~~~~~~  162 (529)
T 3npe_A           85 PCFDPVA-GHHLFDGDGMVHALRIRNGAAESYACRFTETARLRQERAIGRPVFPKAIGELHGH-SGIARLALFYARAACG  162 (529)
T ss_dssp             CSSCCSS-CCCGGGSCBEEEEEEEETTEEEEEEEEECCCHHHHHHHHHTSCCSCCTTTTTTSS-THHHHHHHHHHHHHTT
T ss_pred             cCcCCcC-CCccCCCCceEEEEEECCCccceEEEeEecCHHHHHHHHcCCccccccccccccc-chhhhhhhhhhhcccc
Confidence            9887755 799999999999999999999 999999999999999999999999988888776 7788877777888778


Q ss_pred             cccCCCCCCcceeEEEEeCCEEEEEEeCCccEEEecCCCCCccceeeccCCCccccCccCCCcccCCCCcEEEEEeccC-
Q 044992          227 QLSINSGFGLANTSLAFLGNRLLALYEGDLPYAVRLTSNGDIETLGRCDLDGKLVMNMTAHPKKDPETGEMFAFRYSPM-  305 (597)
Q Consensus       227 ~~~~~~~~~~ANT~v~~~~grLlAl~E~g~Py~ld~~~~~tLeTlG~~d~~g~l~~~ftAHPk~DP~tGel~~f~~~~~-  305 (597)
                      +++..+++++|||||++|+||||||||+|+||++++||++||||+|++||+|+|..+||||||+||+||||++|+|+.. 
T Consensus       163 ~~~~~~~~~~ANtnvv~~~g~llAl~E~g~Py~~~idp~~tLeT~G~~d~~g~l~~~~tAHPk~Dp~TGel~~f~y~~~~  242 (529)
T 3npe_A          163 LVDPSAGTGVANAGLVYFNGRLLAMSEDDLPYHVRVADDGDLETVGRYDFDGQLGCAMIAHPKLDPATGELHALSYDVIK  242 (529)
T ss_dssp             SCCGGGCCCCCCSCEEEETTEEEECCTTSCCEEEEECTTSCEEEEEECCGGGCCCSCCCSCCEECTTTCCEEEEECCSSS
T ss_pred             cccccccCCCCeEEEEEECCEEEEEEcCCCceEEecCCCCCcceeeeeccCCccCCcccccCcCCCCCCcEEEEEeecCC
Confidence            7776667799999999999999999999999999988767999999999999999999999999999999999999985 


Q ss_pred             CCeEEEEEEcCCCCccceEEEeeCCccCCCCCcceeeecCCcEEEEEecceeccHHHHHhcCCCceeeCCCCCcEEEEee
Q 044992          306 PPFVTYFWFDANGEKQPDVHIKMPGQWLRHPPLMHDFAITKRYAIFVDTQVQAYGMEMILRREPLLHSDPTKVSRIGVMP  385 (597)
Q Consensus       306 ~p~~~~~~~d~~G~~~~~~~i~l~~~~~~~p~~iHDfaiTenyvVf~d~p~~~~~~~m~~~g~~~~~~dp~~~tr~~Vip  385 (597)
                      +|+++||++|++|++.+.+.|++     +.|+|||||||||||+||+++|+++|+.+|+ .|++++.|+|++++||||||
T Consensus       243 ~p~~~~~~~~~~G~~~~~~~i~~-----~~p~~~HDFaiTenyvVf~~~Pl~~~~~~~~-~g~~~~~~~p~~~tr~~Vip  316 (529)
T 3npe_A          243 RPYLKYFYFRPDGTKSDDVEIPL-----EQPTMIHDFAITENLVVVPDHQVVFKLQEML-RGGSPVVLDAAKTSRFGVLP  316 (529)
T ss_dssp             SCCCEEEEECTTCCBCCCEECCC-----SSCBCCCCCEECSSEEEEEECSEEECGGGGT-TTCCSEEECTTSCCEEEEEE
T ss_pred             CCcEEEEEECCCCCEEEEEEEeC-----CCCceEeeEEecCCeEEEEeCCeEEcHHHHh-CCCCceEECCCCCcEEEEEE
Confidence            59999999999999988888887     7899999999999999999999999999998 78899999999999999999


Q ss_pred             CCCCCCCceEEEecCCcceeeecceeecCCCcEEEEEeecCCChHHHHHH-hhhccceEEEEEEeCCCCcEEEEEcc---
Q 044992          386 RYAKNSSQMRWFDAPGLNNIHAVNAWDEEDGNVIVMVAPNILSVEQVFER-MELIHCLMEKVRIDLRTGVVSRHPIS---  461 (597)
Q Consensus       386 R~~~~~~~v~w~e~p~~f~fH~~NA~Ee~dg~~Ivl~~~~~~~~~~~~~~-~~~~~~~l~r~ridl~tG~v~~~~L~---  461 (597)
                      |++++.+.++||++|+||+||++|||||+++++||++.||+.+.+.+++. .+.+.++|+|||||+++|+++++.|.   
T Consensus       317 R~~~~~~~vrw~e~~~~f~fH~~NA~Ee~~~~~ivv~~~~~~~~~~~~~~~~~~~~~~l~r~rl~l~~g~~~~~~l~~~~  396 (529)
T 3npe_A          317 KHAADASEMAWVDVPDCFCFHLWNAWEDEATGEVVVIGSCMTPADSIFNESDERLESVLTEIRLDARTGRSTRRAVLPPS  396 (529)
T ss_dssp             TTCSSGGGCEEEECTTCEEEEEEEEEEETTTTEEEEEEEEECCCCCSCCSSSSCCCCEEEEEEECTTTCCEEEEESSCSS
T ss_pred             CCCCCCCceEEEEcCCEEEEEecccEecCCCCeEEEEEecccCchhhhhccchhhccceEEEEEcCCCCCEEeEEecccc
Confidence            99877678999999999999999999997656888888887665555433 24567899999999999999999887   


Q ss_pred             -CCCCccceeCCCCCCCCCceEEEecCCCCCCCCceEEEecCCCcccceeEEEEEcCCCCCCCCcEEEeeCCC---CCCC
Q 044992          462 -ARNLDMAVINPGYVAKKNRYVYAAVGDPMPKMTGLVKLDLTKGERQECTVATRIYGPDCYGGEPFFAARDAA---DKEA  537 (597)
Q Consensus       462 -~~~~EfP~In~~~~Gr~~RY~Y~~~~~~~~~~~glvK~Dl~tg~~~~~~~~~~~~g~g~~~gEPvFVPr~~~---~~~~  537 (597)
                       +.++|||+||++|+||+|||+|+++.++++++++|+|+|++||+     ...||+|++||+|||+||||+++   +  +
T Consensus       397 ~~~~~EfP~In~~~~Gr~~Ry~Y~~~~~~~~~~~~l~K~D~~tg~-----~~~~~~g~~~~~~EPvFVPrp~~~~~~--~  469 (529)
T 3npe_A          397 QQVNLEVGMVNRNLLGRETRYAYLAVAEPWPKVSGFAKVDLSTGE-----LTKFEYGEGRFGGEPCFVPMDPAAAHP--R  469 (529)
T ss_dssp             SCCCEEEEEECGGGTTSCCSEEEEEECCSTTSCCEEEEEETTTCC-----EEEEECCTTBCCCCCEEEECCSCSSSS--C
T ss_pred             cCccccCceEChhHcCCccceEEEeccCCCCCcceEEEEecCCCc-----eEEEEcCCCccccCCEeeeCCCCCCCC--C
Confidence             48999999999999999999999988877889999999999999     67899999999999999999861   2  6


Q ss_pred             CCCCcEEEEEEEeCCCCceeEEEEeCCCCCCCeEEEEEcCCcCCCCcccccccCccccc
Q 044992          538 DEDDGYILSYVHDEKAGESKFLVMDAKSPHLDIVAEVKLPQRVPAGFHGLFVREIDFCK  596 (597)
Q Consensus       538 ~EDDGylls~V~d~~~~~Sel~VlDA~~~~~~pVA~v~LP~rVP~GFHG~fv~~~~l~~  596 (597)
                      +|||||||++|||+.+++|+|+||||++  +++|||++||+||||||||+|++++||++
T Consensus       470 ~EDDG~lLs~V~d~~~~~S~LlILDA~~--l~~vArv~LP~rvP~GfHG~wv~~~~l~~  526 (529)
T 3npe_A          470 GEDDGYVLTFVHDERAGTSELLVVNAAD--MRLEATVQLPSRVPFGFHGTFITGQELEA  526 (529)
T ss_dssp             CTTCEEEEEEEEBSSCCCEEEEEEETTT--TEEEEEEEESSCCCCCSCEEEEEHHHHTT
T ss_pred             CCCCcEEEEEEEECCCCcEEEEEEeCCC--CccceEEECCCCCCCCccccccCHHHhhh
Confidence            8999999999999999999999999999  56899999999999999999999999864
>2biw_A Apocarotenoid-cleaving oxygenase; non-heme iron, carotenoid cleavage, retinal forma oxidoreductase, dioxygenase; HET: 3ON; 2.39A {Synechocystis SP} PDB: 2bix_A* Back     alignment and structure
>3kvc_A Retinoid isomerohydrolase; 7-bladed beta-propeller, monotopic membrane protein, sensory transduction, vision, isomerase, non-heme iron protein; 1.90A {Bos taurus} PDB: 3fsn_A 4f2z_A 4f30_A 4f3a_A 4f3d_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00