Citrus Sinensis ID: 044999

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-
Protein Sequence
MGNPDTNWEEAFNRFEQAVVSGSEALQVKALTKLARVSKFAPQDILAATIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQADGALATEIGQSGVINSVLRLFPQSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLNSCNDGTRRYLLEILSALALLREVRRVLICLGGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRARRLLVELGVIPGLVELFHIGDWTTKLVAGNTLGVVAAHVEYITPVAEAGAIPLYAELLQGPDSTGKEISEDVFCILAVSEANANAIAEHLVRILREGDNEANAAAADVLWDLAGYKHSVPVIRNSGAIPILVNLLRGENDEVREKVSGAIAQLSYNEADRVALADAGAVPIMIELLHDESEELRDNAAESLINFSEDPLQHERISEAIGIPSFQSMQSRLTRIRASDDLMARSMRRMSIEQLTWDPDL
Secondary Structure (PSIPRED)
cccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHccccHHHHHHcccHHHHHHHHccccccccccHHHHHHHHHHHHHHHcccccHHHHHHHHcccHHHHHHHcccccHHHHHHHHHHHHHHHcccHHHHHHHHHcccHHHHHHHHccccHHHHHHHHHHHHHHHccHHHHHHHHHcccHHHHHHHHccccHHHHHHHHHHHHHHHccccHHHHHHHcccHHHHHHHcccccHHHHHHHHHHHHHHHcccccHHHHHHcccHHHHHHHHccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccccHHHHHHcccHHHHHHHcccccHHHHHHHHHHHHHHcccHHHHHHHHHcccHHHHHHHcccccHHHHHHHHHHHHHHcccHHHHHHHHHcccHHHHHHHHcccHHcHHHHHHHHHHHHHHHHHHHcccccc
Secondary Structure Prediction (SSPRO)
cccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHcccccHHHHHHHcccHHHHHHHHHcccHHHHHHHHHHHHHHHHccHHHHHHHHHcccHHHHHHHHccccHHHHHHHHHHHHHHHccHHHHHHHHHcccHHHHHHHHHcccHHHHHHHHHHHHHHHccHHHHHHHHHccccHHHHHHHHcccHHHHHHHHHHHHHHHccHHHHHHHHHcccHHHHHHHHccccHHHHHHHHHHHHHHHcccHcHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHccHHHHHHHHHccccHHHHHHHHcccHHHHHHHHHHHHHHHccHHHHHHHHHccccHHHHHHHHcccHHHHHHHHHHHHHHHccHHHHHHHHHccccHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHcccccc
Coil and Loop (DISEMBL)
MGNPDTNWEEAFNRFEQAVVSGSEALQVKALTKLArvskfapqdiLAATIPILARLLgennfsgnLTRSIQQAAAYCLKQIASQADGAlateigqsgvinsvlrlfpqsddsFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLNSCNDGTRRYLLEILSALALLREVRRVLICLGGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRARRLLVELGVIPGLVELFHIGDWTTKLVAGNTLGVVAAHVEYITPVAEAGAIPLYaellqgpdstgkeiSEDVFCILAVSEANANAIAEHLVRILREGDNEANAAAADVLWDLagykhsvpvirnsgaipILVNLLRGENDEVREKVSGAIAQLSYNEADRVALADAGAVPIMIELLHDESEELRDNAAESLInfsedplqheriseaigipsfqsMQSRLTRIRASDDLMARSMRRMSIeqltwdpdl
Flexible Loop (DISEMBL)
mgnpdtnwEEAFNRFEQAVVSGSEALQVKALTKLarvskfapqDILAATIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQADGALATEIGQSGVINSVLRLFPQSDDSFRTVLVKCLRVFvtfgnenrvivarnggleIVIDLLNSCNDGTRRYLLEILSALALLREVRRVLICLGGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRARRLLVELGVIPGLVELFHIGDWTTKLVAGNTLGVVAAHVEYITPVAEAGAIPLYAELLQGPDSTGKEISEDVFCILAVSEANANAIAEHLVRILREGDNEANAAAADVLWDLAGYKHSVPVIRNSGAIPILVNLLRGENDEVREKVSGAIAQLSYNEADRVALADAGAVPIMIELLHDESEELRDNAAESLINFSEDPLQHERISEAigipsfqsmqsRLTRIRASDDLMARSMRrmsieqltwdpdl
Low Complexity Region (SEG)
MGNPDTNWEEAFNRFEQAVVSGSEALQVKALTKLARVSKFAPQDILAATIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQADGALATEIGQSGVINSVLRLFPQSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLNSCNDGTRRYlleilsalallrevrrvlICLGGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRARRLLVELGVIPGLVELFHIGDWTTKLVAGNTLGVVAAHVEYITPVAEAGAIPLYAELLQGPDSTGKEISEDVFCILAVSEANANAIAEHLVRILRegdneanaaaadvlwdlagYKHSVPVIRNSGAIPILVNLLRGENDEVREKVSGAIAQLSYNEADRVALADAGAVPIMIELLHDESEELRDNAAESLINFSEDPLQHERISEAIGIPSFQSMQSRLTRIRASDDLMARSMRRMSIEQLTWDPDL
Disordered region (IsUnstruct)
***********FNRFEQAVVSGSEALQVKALTKLARVSKFAPQDILAATIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQADGALATEIGQSGVINSVLRLFPQSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLNSCNDGTRRYLLEILSALALLREVRRVLICLGGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRARRLLVELGVIPGLVELFHIGDWTTKLVAGNTLGVVAAHVEYITPVAEAGAIPLYAELLQGPDSTGKEISEDVFCILAVSEANANAIAEHLVRILREGDNEANAAAADVLWDLAGYKHSVPVIRNSGAIPILVNLLRGENDEVREKVSGAIAQLSYNEADRVALADAGAVPIMIELLH***********************************************************************
Disordered Region (DISOPRED)
****DTNWEEAFNRFE******SEALQVKALTKLARVSKFAPQDILAATIPILARLLGENNF****TRSIQQAAAYCLKQIASQADGALATEIGQSGVINSVLRLFPQSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLNSCNDGTRRYLLEILSALALLREVRRVLICLGGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRARRLLVELGVIPGLVELFHIGDWTTKLVAGNTLGVVAAHVEYITPVAEAGAIPLYAELLQGPDSTGKEISEDVFCILAVSEANANAIAEHLVRILREGDNEANAAAADVLWDLAGYKHSVPVIRNSGAIPILVNLLRGENDEVREKVSGAIAQLSYNEADRVALADAGAVPIMIELLHDESEELRDNAAESLINFSEDPLQHERISEAIGIPSFQSM*************MARSMRRMSIEQL*WD***
Disordered Region (DISEMBL)
MGNPDTNWEEAFNRFEQAVVSGSEALQVKALTKLARVSKFAPQDILAATIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQADGALATEIGQSGVINSVLRLFPQSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLNSCNDGTRRYLLEILSALALLREVRRVLICLGGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRARRLLVELGVIPGLVELFHIGDWTTKLVAGNTLGVVAAHVEYITPVAEAGAIPLYAELLQGPDSTGKEISEDVFCILAVSEANANAIAEHLVRILREGDNEANAAAADVLWDLAGYKHSVPVIRNSGAIPILVNLLRGENDEVREKVSGAIAQLSYNEADRVALADAGAVPIMIELLHDESEELRDNAAESLINFSEDPLQHERISEAIGIPSFQSMQSRLTRIRASDDLMARSMRRMSIEQLTWDPDL
Disordered Region (DISPRO)
****DTNWEEAFNRFEQAVVSGSEALQVKALTKLARVSKFAPQDILAATIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQADGALATEIGQSGVINSVLRLFPQSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLNSCNDGTRRYLLEILSALALLREVRRVLICLGGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRARRLLVELGVIPGLVELFHIGDWTTKLVAGNTLGVVAAHVEYITPVAEAGAIPLYAELLQGPDSTGKEISEDVFCILAVSEANANAIAEHLVRILREGDNEANAAAADVLWDLAGYKHSVPVIRNSGAIPILVNLLRGENDEVREKVSGAIAQLSYNEADRVALADAGAVPIMIELLHDESEELRDNAAESLINFSEDPLQHERISEAIGIPSFQSMQSRLTRIRASDDLMARSMRRMSIEQLTW****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGNPDTNWEEAFNRFEQAVVSGSEALQVKALTKLARVSKFAPQDILAATIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQADGALATEIGQSGVINSVLRLFPQSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLNSCNDGTRRYLLEILSALALLREVRRVLICLGGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRARRLLVELGVIPGLVELFHIGDWTTKLVAGNTLGVVAAHVEYITPVAEAGAIPLYAELLQGPDSTGKEISEDVFCILAVSEANANAIAEHLVRILREGDNEANAAAADVLWDLAGYKHSVPVIRNSGAIPILVNLLRGENDEVREKVSGAIAQLSYNEADRVALADAGAVPIMIELLHDESEELRDNAAESLINFSEDPLQHERISEAIGIPSFQSMQSRLTRIRASDDLMARSMRRMSIEQLTWDPDL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	461	2.2.26 [Sep-21-2011]
Q9ZV31	654	U-box domain-containing p	no	no	0.585	0.412	0.225	1e-08
O22193	826	U-box domain-containing p	no	no	0.490	0.273	0.270	2e-08
Q9M224	928	Protein ARABIDILLO 2 OS=A	no	no	0.689	0.342	0.239	3e-08
Q5T2S8	1044	Armadillo repeat-containi	yes	no	0.613	0.271	0.253	6e-08
O22161	930	Protein ARABIDILLO 1 OS=A	no	no	0.728	0.361	0.231	1e-07
Q8VZ40	632	U-box domain-containing p	no	no	0.312	0.227	0.268	2e-07
Q5VRH9	611	U-box domain-containing p	yes	no	0.229	0.173	0.345	5e-07
Q9SNC6	660	U-box domain-containing p	no	no	0.422	0.295	0.259	1e-06
Q681N2	660	U-box domain-containing p	no	no	0.271	0.189	0.323	1e-06
Q8GUG9	612	U-box domain-containing p	no	no	0.295	0.222	0.297	2e-06

>sp|Q9ZV31|PUB12_ARATH U-box domain-containing protein 12 OS=Arabidopsis thaliana GN=PUB12 PE=2 SV=1

 Score = 62.0 bits (149), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 70/310 (22%), Positives = 135/310 (43%), Gaps = 40/310 (12%)

Query: 102 VLRLFPQSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLNSCNDG-TRRYLL 160
           +L+L  Q  +  R+   + +R+     N NRV +A +G + ++++LL   ND  T+ + +
Sbjct: 361 LLKLTSQQPEDRRSAAGE-IRLLAKQNNHNRVAIAASGAIPLLVNLLTISNDSRTQEHAV 419

Query: 161 EILSALALLREVR-RVLICLGGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRARRLLVE 219
             +  L++ +E + +++   G +  +V  +  GSM +RE A   +  L+V    +  +  
Sbjct: 420 TSILNLSICQENKGKIVYSSGAVPGIVHVLQKGSMEARENAAATLFSLSVIDENKVTIGA 479

Query: 220 LGVIPGLVELFHIGDWTTKLVAGNTLGVVAAHVEYITPVAEAGAIPLYAELLQGPDSTGK 279
            G IP LV L   G    K  A   L  +            AG +P+   LL  P+S   
Sbjct: 480 AGAIPPLVTLLSEGSQRGKKDAATALFNLCIFQGNKGKAVRAGLVPVLMRLLTEPESG-- 537

Query: 280 EISEDVFCILAVSEANANAIAEHLVRILREGDNEANAAAADVLWDLAGYKHSVPVIRNSG 339
            + ++   ILA+       ++ H        D ++   AAD                   
Sbjct: 538 -MVDESLSILAI-------LSSH-------PDGKSEVGAAD------------------- 563

Query: 340 AIPILVNLLRGENDEVREKVSGAIAQL-SYNEADRVALADAGAVPIMIELLHDESEELRD 398
           A+P+LV+ +R  +   +E  +  +  L S+N+   +     G + ++IE+  + ++  + 
Sbjct: 564 AVPVLVDFIRSGSPRNKENSAAVLVHLCSWNQQHLIEAQKLGIMDLLIEMAENGTDRGKR 623

Query: 399 NAAESLINFS 408
            AA+ L  FS
Sbjct: 624 KAAQLLNRFS 633

Functions as an E3 ubiquitin ligase.
Arabidopsis thaliana (taxid: 3702)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: -

>sp|O22193|PUB4_ARATH U-box domain-containing protein 4 OS=Arabidopsis thaliana GN=PUB4 PE=1 SV=3

 Score = 61.2 bits (147), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 63/233 (27%), Positives = 111/233 (47%), Gaps = 7/233 (3%)

Query: 182 LRYLVEAVSFGSMVSRERACQAIGLLAVTGRARRLLV-ELGVIPGLVELFHIGDWTTKLV 240
           ++ LVE +   S+ ++ +A   + LLA      R+++   G I  LVEL +  D  T+  
Sbjct: 543 VKKLVEELKSSSLDTQRQATAELRLLAKHNMDNRIVIGNSGAIVLLVELLYSTDSATQEN 602

Query: 241 AGNTLGVVAAHVEYITPVAEAGAIPLYAELLQGPDSTGKEISEDVFCILAVSEANANAIA 300
           A   L  ++ +      +A+AGAI     +L+   S  KE S      L+V E N   I 
Sbjct: 603 AVTALLNLSINDNNKKAIADAGAIEPLIHVLENGSSEAKENSAATLFSLSVIEENKIKIG 662

Query: 301 EH-----LVRILREGDNEANAAAADVLWDLAGYKHSVPVIRNSGAIPILVNLLRGENDEV 355
           +      LV +L  G       AA  L++L+ ++ +  +I  SGA+  L++L+      V
Sbjct: 663 QSGAIGPLVDLLGNGTPRGKKDAATALFNLSIHQENKAMIVQSGAVRYLIDLMDPAAGMV 722

Query: 356 REKVSGAIAQLSYNEADRVALADAGAVPIMIELLHDESEELRDNAAESLINFS 408
            +K    +A L+     R A+   G +P+++E++   S   ++NAA +L+  S
Sbjct: 723 -DKAVAVLANLATIPEGRNAIGQEGGIPLLVEVVELGSARGKENAAAALLQLS 774

Functions as an E3 ubiquitin ligase.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q9M224|ADLO2_ARATH Protein ARABIDILLO 2 OS=Arabidopsis thaliana GN=At3g60350 PE=2 SV=1

 Score = 60.1 bits (144), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 83/347 (23%), Positives = 156/347 (44%), Gaps = 29/347 (8%)

Query: 121 LRVFVTFGNENRVI-------VARNGGLEIVIDLLNSCNDGTRRYLLEILSALALLREVR 173
           L  F+   +EN  I       V R+GG+ ++++L  S  +G +    + ++ L++  +V 
Sbjct: 404 LATFIVVDDENASIDCGRAEAVMRDGGIRLLLELAKSWREGLQSEAAKAIANLSVNAKVA 463

Query: 174 RVLICLGGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRARRLLVELGVIPGLVELF--- 230
           + +   GG+  L +     + +  E A   +  L+V    +  + + G +  LV+L    
Sbjct: 464 KAVAEEGGISVLADLAKSMNRLVAEEAAGGLWNLSVGEEHKNAIAQAGGVNALVDLIFRW 523

Query: 231 -HIGDWTTKLVAGNTLGVVAAHVEYITPVAEAGAIPLYAELLQGPDSTG--KEISEDVFC 287
            H  D   +  AG    + A   +    VA AG +     L +     G  ++ +  +  
Sbjct: 524 PHGCDGVLERAAGALANLAADD-KCSMEVARAGGVHALVMLARNCKYEGAQEQAARALAN 582

Query: 288 ILAVSEANANAIA--------EHLVRILREGDNEANAAAADVLWDLAGYKHSVPVIRNSG 339
           + A  ++N N  A        E LV++ +         AA  LW+LA    +   I   G
Sbjct: 583 LAAHGDSNGNNAAVGQEAGALEALVQLTQSPHEGVKQEAAGALWNLAFDDKNRESIAAFG 642

Query: 340 AIPILVNLLRGENDE---VREKVSGAIAQLSYNEADRVALADAGAVPIMIELLHDESEEL 396
            +  LV L +  ++    ++E+V+GA+  LS +EA+ +A+   G +P +I L+  E+E++
Sbjct: 643 GVEALVALAKSSSNASTGLQERVAGALWGLSVSEANSIAIGHEGGIPPLIALVRSEAEDV 702

Query: 397 RDNAAESLINFSEDPLQHERISEAIGIPSF----QSMQSRLTRIRAS 439
            + AA +L N S +P    RI E  G+ +      S  S++ R  A+
Sbjct: 703 HETAAGALWNLSFNPGNALRIVEEGGVVALVQLCSSSVSKMARFMAA 749

Promotes lateral root initiation and development, independently of auxin (IAA) and abscisis acid (ABA).

Arabidopsis thaliana (taxid: 3702)

>sp|Q5T2S8|ARMC4_HUMAN Armadillo repeat-containing protein 4 OS=Homo sapiens GN=ARMC4 PE=2 SV=1

 Score = 59.3 bits (142), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 81/319 (25%), Positives = 141/319 (44%), Gaps = 36/319 (11%)

Query: 115 TVLVKCLRVFVTFGNENRVIVARN-GGLEIVIDLLNS----CNDGTRRYLLEILSALALL 169
           TV+  C     +   E   +  R+ GGLE++I+LL +    C  G+    L+IL  ++  
Sbjct: 469 TVIALCSMRDFSLAQETCQLAIRDVGGLEVLINLLETDEVKCKIGS----LKILKEISHN 524

Query: 170 REVRRVLICLGGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRARRLLVELGVIPGLVEL 229
            ++R+ ++ LGGL  +V  +       +  A + I  +A   RARR++ + G I  LV L
Sbjct: 525 PQIRQNIVDLGGLPIMVNILDSPHKSLKCLAAETIANVAKFKRARRVVRQHGGITKLVAL 584

Query: 230 FHIGDWTTKLVAGN-------------TLGVVAAHVEYITPVA--EAGAIPLYAELLQGP 274
                 +TK    +              L + +    +    A  +AG IPL A LL+  
Sbjct: 585 LDCAHDSTKPAQSSLYEARDVEVARCGALALWSCSKSHTNKEAIRKAGGIPLLARLLK-- 642

Query: 275 DSTGKEISEDVFCIL--AVSEANANA------IAEHLVRILREGDNEANAAAADVLWDLA 326
            ++ + +   V   L    SE N  A      I E+LV+ L   + +     A  ++  A
Sbjct: 643 -TSHENMLIPVVGTLQECASEENYRAAIKAERIIENLVKNLNSENEQLQEHCAMAIYQCA 701

Query: 327 GYKHSVPVIRNSGAIPILVNLLRG-ENDEVREKVSGAIAQLSYNEADRVALADAGAVPIM 385
             K +  ++R  G +  L +LL   +N E    V+GAI + S ++ +     +  A+  +
Sbjct: 702 EDKETRDLVRLHGGLKPLASLLNNTDNKERLAAVTGAIWKCSISKENVTKFREYKAIETL 761

Query: 386 IELLHDESEELRDNAAESL 404
           + LL D+ EE+  N   +L
Sbjct: 762 VGLLTDQPEEVLVNVVGAL 780

Homo sapiens (taxid: 9606)

>sp|O22161|ADLO1_ARATH Protein ARABIDILLO 1 OS=Arabidopsis thaliana GN=FBX5 PE=1 SV=1

 Score = 58.5 bits (140), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 85/367 (23%), Positives = 161/367 (43%), Gaps = 31/367 (8%)

Query: 102 VLRLFPQSDDSFRTVLVKCLRVFVTFGNENRVI-------VARNGGLEIVIDLLNSCNDG 154
           +L L   S +  +      L  FV   +EN  I       V ++GG+ ++++L  S  +G
Sbjct: 394 LLNLMQSSQEDVQERSATGLATFVVVDDENASIDCGRAEAVMKDGGIRLLLELAKSWREG 453

Query: 155 TRRYLLEILSALALLREVRRVLICLGGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRAR 214
            +    + ++ L++   + + +   GG++ L       + +  E A   +  L+V    +
Sbjct: 454 LQSEAAKAIANLSVNANIAKSVAEEGGIKILAGLAKSMNRLVAEEAAGGLWNLSVGEEHK 513

Query: 215 RLLVELGVIPGLVELFHIGDWTTKLVA-----GNTLGVVAAHVEYITPVAEAGAIPLYAE 269
             + + G +  LV+L  I  W              L  +AA  +    VA+AG +     
Sbjct: 514 NAIAQAGGVKALVDL--IFRWPNGCDGVLERAAGALANLAADDKCSMEVAKAGGVHALVM 571

Query: 270 LLQGPDSTG--KEISEDVFCILAVSEANANAIA--------EHLVRILREGDNEANAAAA 319
           L +     G  ++ +  +  + A  ++N N  A        E LV++ +         AA
Sbjct: 572 LARNCKYEGVQEQAARALANLAAHGDSNNNNAAVGQEAGALEALVQLTKSPHEGVRQEAA 631

Query: 320 DVLWDLAGYKHSVPVIRNSGAIPILVNLLRGENDE---VREKVSGAIAQLSYNEADRVAL 376
             LW+L+    +   I  +G +  LV L +  ++    ++E+ +GA+  LS +EA+ VA+
Sbjct: 632 GALWNLSFDDKNRESISVAGGVEALVALAQSCSNASTGLQERAAGALWGLSVSEANSVAI 691

Query: 377 ADAGAVPIMIELLHDESEELRDNAAESLINFSEDPLQHERISEAIGIPSF----QSMQSR 432
              G VP +I L   E+E++ + AA +L N + +P    RI E  G+P+      S  S+
Sbjct: 692 GREGGVPPLIALARSEAEDVHETAAGALWNLAFNPGNALRIVEEGGVPALVHLCSSSVSK 751

Query: 433 LTRIRAS 439
           + R  A+
Sbjct: 752 MARFMAA 758

Promotes lateral root initiation and development, independently of auxin (IAA) and abscisis acid (ABA).

Arabidopsis thaliana (taxid: 3702)

>sp|Q8VZ40|PUB14_ARATH U-box domain-containing protein 14 OS=Arabidopsis thaliana GN=PUB14 PE=1 SV=1

 Score = 57.8 bits (138), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 51/190 (26%), Positives = 81/190 (42%), Gaps = 46/190 (24%)

Query: 258 VAEAGAIPLYAELLQGPDSTGKEISEDVFCILAVSEANANAIAE-----HLVRILREGDN 312
           +AEAGAIPL  ELL  PD   +E S      L+++E N  AI +      +V +L+ G  
Sbjct: 383 IAEAGAIPLLVELLSSPDPRTQEHSVTALLNLSINEGNKGAIVDAGAITDIVEVLKNGSM 442

Query: 313 EANAAAADVLWDLA----------------------------GYKHSVPVIRN------- 337
           EA   AA  L+ L+                            G K +   I N       
Sbjct: 443 EARENAAATLFSLSVIDENKVAIGAAGAIQALISLLEEGTRRGKKDAATAIFNLCIYQGN 502

Query: 338 ------SGAIPILVNLLRGENDEVREKVSGAIAQLSYNEADRVALADAGAVPIMIELLHD 391
                  G +  L  LL+     + ++    +A LS N+  + A+A+A ++P+++E++  
Sbjct: 503 KSRAVKGGIVDPLTRLLKDAGGGMVDEALAILAILSTNQEGKTAIAEAESIPVLVEIIRT 562

Query: 392 ESEELRDNAA 401
            S   R+NAA
Sbjct: 563 GSPRNRENAA 572

Functions as an E3 ubiquitin ligase with specific E2 ubiquitin-conjugating enzymes. Undergoes auto-ubiquitination.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q5VRH9|PUB12_ORYSJ U-box domain-containing protein 12 OS=Oryza sativa subsp. japonica GN=PUB12 PE=2 SV=1

 Score = 56.2 bits (134), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 37/107 (34%), Positives = 61/107 (57%), Gaps = 1/107 (0%)

Query: 303 LVRILREGDNEANAAAADVLWDLAGYK-HSVPVIRNSGAIPILVNLLRGENDEVREKVSG 361
           L+  LR G+ +   AAA  +  LA    ++   I  +GAIP+LVNLL   +   +E    
Sbjct: 328 LMNRLRSGNQDEQRAAAGEIRLLAKRNVNNRICIAEAGAIPLLVNLLSSSDPRTQEHAVT 387

Query: 362 AIAQLSYNEADRVALADAGAVPIMIELLHDESEELRDNAAESLINFS 408
           A+  LS +E ++ ++ D+ A+P ++E+L   S E R+NAA +L + S
Sbjct: 388 ALLNLSIHENNKASIVDSHAIPKIVEVLKTGSMETRENAAATLFSLS 434

Possesses E3 ubiquitin-protein ligase in vitro.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q9SNC6|PUB13_ARATH U-box domain-containing protein 13 OS=Arabidopsis thaliana GN=PUB13 PE=1 SV=1

 Score = 55.1 bits (131), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 54/208 (25%), Positives = 90/208 (43%), Gaps = 13/208 (6%)

Query: 121 LRVFVTFGNENRVIVARNGGLEIVIDLLNSCNDGTRRYLLEILSALALLREVRRVLICLG 180
           +R+      +NRV +A  G + +++ LL++ +   + + +  L  L++    +  ++  G
Sbjct: 376 IRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRIQEHSVTALLNLSICENNKGAIVSAG 435

Query: 181 GLRYLVEAVSFGSMVSRERACQAIGLLAVTGRARRLLVELGVIPGLVELFHIGDWTTKLV 240
            +  +V+ +  GSM +RE A   +  L+V    +  +  LG IP LV L + G    K  
Sbjct: 436 AIPGIVQVLKKGSMEARENAAATLFSLSVIDENKVTIGALGAIPPLVVLLNEGTQRGKKD 495

Query: 241 AGNTLGVVAAHVEYITPVAEAGAIPLYAELLQGPDSTGKEISEDVFCILAV--SEANANA 298
           A   L  +  +         AG IP    LL  P   G  + ++   ILA+  S     A
Sbjct: 496 AATALFNLCIYQGNKGKAIRAGVIPTLTRLLTEP---GSGMVDEALAILAILSSHPEGKA 552

Query: 299 I------AEHLVRILREGD--NEANAAA 318
           I         LV  +R G   N  NAAA
Sbjct: 553 IIGSSDAVPSLVEFIRTGSPRNRENAAA 580

Functions as an E3 ubiquitin ligase.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q681N2|PUB15_ARATH U-box domain-containing protein 15 OS=Arabidopsis thaliana GN=PUB15 PE=2 SV=2

 Score = 55.1 bits (131), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 42/130 (32%), Positives = 64/130 (49%), Gaps = 5/130 (3%)

Query: 258 VAEAGAIPLYAELLQGPDSTGKEISEDVFCILAVSEANANAIAE-----HLVRILREGDN 312
           +A AGAIPL  +LL  PDS  +E +      L++ E N   I+      +++ IL  G+ 
Sbjct: 417 IANAGAIPLLVQLLSYPDSGIQENAVTTLLNLSIDEVNKKLISNEGAIPNIIEILENGNR 476

Query: 313 EANAAAADVLWDLAGYKHSVPVIRNSGAIPILVNLLRGENDEVREKVSGAIAQLSYNEAD 372
           EA   +A  L+ L+    +   I  S  IP LV+LL+      ++    A+  LS N A+
Sbjct: 477 EARENSAAALFSLSMLDENKVTIGLSNGIPPLVDLLQHGTLRGKKDALTALFNLSLNSAN 536

Query: 373 RVALADAGAV 382
           +    DAG V
Sbjct: 537 KGRAIDAGIV 546

Functions as an E3 ubiquitin ligase.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q8GUG9|PUB11_ARATH U-box domain-containing protein 11 OS=Arabidopsis thaliana GN=PUB11 PE=2 SV=2

 Score = 54.7 bits (130), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/141 (29%), Positives = 67/141 (47%), Gaps = 5/141 (3%)

Query: 258 VAEAGAIPLYAELLQGPDSTGKEISEDVFCILAVSEANANAI-----AEHLVRILREGDN 312
           +AEAGAIP+   LL   D   +E +      L++ E N   I        +V++LR G  
Sbjct: 369 IAEAGAIPVLVNLLTSEDVATQENAITCVLNLSIYENNKELIMFAGAVTSIVQVLRAGTM 428

Query: 313 EANAAAADVLWDLAGYKHSVPVIRNSGAIPILVNLLRGENDEVREKVSGAIAQLSYNEAD 372
           EA   AA  L+ L+    +  +I  SGAIP LV+LL       ++  + A+  L     +
Sbjct: 429 EARENAAATLFSLSLADENKIIIGGSGAIPALVDLLENGTPRGKKDAATALFNLCIYHGN 488

Query: 373 RVALADAGAVPIMIELLHDES 393
           +     AG V  ++++L D +
Sbjct: 489 KGRAVRAGIVTALVKMLSDST 509

Functions as an E3 ubiquitin ligase.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	461
356524336	461	PREDICTED: U-box domain-containing prote	0.991	0.991	0.618	1e-163
255584637	468	ubiquitin-protein ligase, putative [Rici	0.989	0.974	0.670	1e-163
225460757	455	PREDICTED: U-box domain-containing prote	0.980	0.993	0.617	1e-151
297737543	464	unnamed protein product [Vitis vinifera]	0.980	0.974	0.617	1e-151
15231056	475	armadillo/beta-catenin-like repeat-conta	0.984	0.955	0.589	1e-142
297830702	475	armadillo/beta-catenin repeat family pro	0.984	0.955	0.587	1e-142
147858500	471	hypothetical protein VITISV_006363 [Viti	0.976	0.955	0.584	1e-142
225460755	471	PREDICTED: vacuolar protein 8 [Vitis vin	0.976	0.955	0.582	1e-141
449465503	470	PREDICTED: armadillo repeat-containing p	0.993	0.974	0.551	1e-138
449522201	470	PREDICTED: LOW QUALITY PROTEIN: armadill	0.993	0.974	0.551	1e-138

>gi|356524336|ref|XP_003530785.1| PREDICTED: U-box domain-containing protein 14-like [Glycine max]

 Score =  582 bits (1501), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 285/461 (61%), Positives = 366/461 (79%), Gaps = 4/461 (0%)

Query: 3   NPDTNWEEAFNRFEQAVVSGSEALQVKALTKLARVSKFAPQDILAATIPILARLLGENNF 62
           NP  +WE+   ++E  + SG+  +++KA+  L R+SK AP+D+LA TIPIL  +LG +N 
Sbjct: 2   NP-VDWEQELKKYEDVIASGTNCMKIKAMVMLTRLSKHAPEDVLARTIPILTEILG-HNV 59

Query: 63  SGNLTRSIQQAAAYCLKQIASQADGALATEIGQSGVINSVLRLFPQSDDSFRTVLVKCLR 122
           S +   ++Q+AAAYCLK IA + DG LA EIG  G   S++RL P S+   + VL KC+ 
Sbjct: 60  SNDSAPTLQEAAAYCLKCIACRGDGELAVEIGGHGATRSLMRLLPHSEGRMQKVLTKCML 119

Query: 123 VFVTFGNENRVIVARNGGLEIVIDLLNSCNDGTRRYLLEILSALALLREVRRVLICLGGL 182
           V V+F N +R +VA NGG+E++I LL+SC + TRRYLLEILS LAL R+VR+ L  L  L
Sbjct: 120 VIVSFCNASRTVVATNGGVELIIGLLSSCTEDTRRYLLEILSVLALRRDVRKALTRLRAL 179

Query: 183 RYLVEAVSFGSMVSRERACQAIGLLAVTGRARRLLVELGVIPGLVELFHIGDWTTKLVAG 242
            Y+VEA  FGSMVSRERACQAIGLL VT +ARR+LVELG IP LV +F  GD  TKLVAG
Sbjct: 180 HYVVEAAGFGSMVSRERACQAIGLLGVTRQARRMLVELGAIPVLVAMFRDGDHATKLVAG 239

Query: 243 NTLGVVAAHVEYITPVAEAGAIPLYAELLQGPDSTGKEISEDVFCILAVSEANANAIAEH 302
           N+LGV++AHV+YI PVA+AGAIPLYAELL+GPD +GKEI+EDVFCILAV+EANA  IA H
Sbjct: 240 NSLGVISAHVDYIRPVAQAGAIPLYAELLEGPDPSGKEIAEDVFCILAVAEANAVEIAGH 299

Query: 303 LVRILREGDNEANAAAADVLWDLAGYKHSVPVIRNSGAIPILVNLLRGENDEVREKVSGA 362
           LVRILREGD+EA A+AADV+WDL+GYKH+  V+R+SGAIPILV LL   +++V+  VSGA
Sbjct: 300 LVRILREGDDEAKASAADVMWDLSGYKHTTSVVRDSGAIPILVELLGSGSEDVKVNVSGA 359

Query: 363 IAQLSYNEADRVALADAGAVPIMIELLH--DESEELRDNAAESLINFSEDPLQHERISEA 420
            AQLSY+  DR+ALA+AGAVPI+I+L++  DE EELRDNAAE+L+N+  DPL H+ +S+A
Sbjct: 360 FAQLSYDGTDRMALAEAGAVPILIDLMNDVDEVEELRDNAAEALVNYYVDPLYHDSVSDA 419

Query: 421 IGIPSFQSMQSRLTRIRASDDLMARSMRRMSIEQLTWDPDL 461
           I +PSF++MQ+RLT IRAS++ MARS+RRMS+EQLTW+PDL
Sbjct: 420 INVPSFRNMQNRLTHIRASNEHMARSLRRMSVEQLTWNPDL 460

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255584637|ref|XP_002533042.1| ubiquitin-protein ligase, putative [Ricinus communis] gi|223527180|gb|EEF29350.1| ubiquitin-protein ligase, putative [Ricinus communis]

 Score =  580 bits (1495), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 307/458 (67%), Positives = 373/458 (81%), Gaps = 2/458 (0%)

Query: 4   PDTNWEEAFNRFEQAVVSGSEALQVKALTKLARVSKFAPQDILAATIPILARLLGENNFS 63
           PD  WE+A   +   + SG E+LQVKA  KLA +SK+AP D+L  T+PIL +LL  ++ S
Sbjct: 12  PD--WEKALCSYHNVLSSGIESLQVKATIKLAHLSKYAPDDVLTRTVPILTKLLATSSSS 69

Query: 64  GNLTRSIQQAAAYCLKQIASQADGALATEIGQSGVINSVLRLFPQSDDSFRTVLVKCLRV 123
            N   SIQ+AAAYCL  +  +  G  A+ IGQSG+++S+L   P+S++SFR VL+KCL  
Sbjct: 70  SNSNNSIQEAAAYCLSILLVKKMGFFASAIGQSGILDSILSWLPRSNNSFRRVLIKCLWC 129

Query: 124 FVTFGNENRVIVARNGGLEIVIDLLNSCNDGTRRYLLEILSALALLREVRRVLICLGGLR 183
            V F + NR+IVARNGGLE++IDLLNSC+DG R YLLEILSAL LLREVRRV+I LGGLR
Sbjct: 130 LVNFDSANRLIVARNGGLEVIIDLLNSCSDGNRVYLLEILSALTLLREVRRVVIRLGGLR 189

Query: 184 YLVEAVSFGSMVSRERACQAIGLLAVTGRARRLLVELGVIPGLVELFHIGDWTTKLVAGN 243
           +LVEAV  GS+VSRERACQA+GLL VT RAR +LV +G IP LVEL   GDW TKLVAGN
Sbjct: 190 FLVEAVKDGSLVSRERACQAVGLLGVTRRARSMLVAMGAIPALVELLQNGDWNTKLVAGN 249

Query: 244 TLGVVAAHVEYITPVAEAGAIPLYAELLQGPDSTGKEISEDVFCILAVSEANANAIAEHL 303
           +LGV++AHV++I  VAEAGAIPLYAELLQGPD  GKEI+EDVFCILAV++ NA  IAEHL
Sbjct: 250 SLGVISAHVDFIRLVAEAGAIPLYAELLQGPDPIGKEIAEDVFCILAVAQVNAVTIAEHL 309

Query: 304 VRILREGDNEANAAAADVLWDLAGYKHSVPVIRNSGAIPILVNLLRGENDEVREKVSGAI 363
           VRILREGD+E+  AA+D+ WDL+GYKHSV V+RNSGAIP+LV LLR EN +VREKVSGAI
Sbjct: 310 VRILREGDDESKVAASDIFWDLSGYKHSVSVVRNSGAIPVLVELLRHENSDVREKVSGAI 369

Query: 364 AQLSYNEADRVALADAGAVPIMIELLHDESEELRDNAAESLINFSEDPLQHERISEAIGI 423
           AQLSYNEADR ALA A AVPI+IELL DESEEL++NAAE+L+NF+EDP QH  ISEA+ +
Sbjct: 370 AQLSYNEADRAALAAARAVPILIELLLDESEELKENAAEALVNFAEDPQQHALISEAVDV 429

Query: 424 PSFQSMQSRLTRIRASDDLMARSMRRMSIEQLTWDPDL 461
           PSFQSMQ+R+ ++R SD+ M RS+RR+S+EQLTWDPDL
Sbjct: 430 PSFQSMQNRMVQLRVSDEQMVRSLRRLSVEQLTWDPDL 467

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225460757|ref|XP_002276151.1| PREDICTED: U-box domain-containing protein 12-like [Vitis vinifera]

 Score =  540 bits (1391), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 283/458 (61%), Positives = 346/458 (75%), Gaps = 6/458 (1%)

Query: 5   DTNWEEAFNRFEQAVVSGSEALQVKALTKLARVSKFAPQDILAATIPILARLLGENNFSG 64
            T+WEE+F  FE+ V SG  A+Q++A+ KLAR+S  AP  +L  T+PIL RLLG ++   
Sbjct: 2   STSWEESFELFEKVVASGRNAMQIRAIIKLARLSNSAPAHVLTRTVPILTRLLGSSS--- 58

Query: 65  NLTRSIQQAAAYCLKQIASQADG-ALATEIGQSGVINSVLRLFPQSDDSFRTVLVKCLRV 123
             + S+Q A+AYCLK IA Q DG  +A  IGQ G I   LRL   S+ SF+ VLVKCL  
Sbjct: 59  --SPSVQGASAYCLKCIAHQGDGDRMAILIGQYGAIPIALRLLQHSEGSFQRVLVKCLWS 116

Query: 124 FVTFGNENRVIVARNGGLEIVIDLLNSCNDGTRRYLLEILSALALLREVRRVLICLGGLR 183
            V FG  NRVI+ RNGGLEI+I +L S     R+YLLEILSALALLREVRRV+I L GLR
Sbjct: 117 LVIFGKHNRVILVRNGGLEIIIRMLGSYTGRMRQYLLEILSALALLREVRRVIISLEGLR 176

Query: 184 YLVEAVSFGSMVSRERACQAIGLLAVTGRARRLLVELGVIPGLVELFHIGDWTTKLVAGN 243
           +LV+AV FG M SRERA  A+G L V  +ARR+LV+LG +  L+ELF  GD  TKLVAGN
Sbjct: 177 FLVQAVKFGGMASRERAAHAVGCLGVAKKARRVLVDLGAMHMLIELFREGDACTKLVAGN 236

Query: 244 TLGVVAAHVEYITPVAEAGAIPLYAELLQGPDSTGKEISEDVFCILAVSEANANAIAEHL 303
            LGV+++H+  I P A+AGAIPLY ELL+G D  GKEI+EDVFC+LAV+E NA AI EHL
Sbjct: 237 ALGVISSHIHCIRPFAQAGAIPLYVELLRGHDPIGKEIAEDVFCVLAVAEVNAVAITEHL 296

Query: 304 VRILREGDNEANAAAADVLWDLAGYKHSVPVIRNSGAIPILVNLLRGENDEVREKVSGAI 363
           V ILRE D+ A AAAAD+LWDL+ Y HSV  IRNSGAIPI V LLR  + EVREKVSGAI
Sbjct: 297 VEILRENDDVAKAAAADILWDLSSYHHSVSFIRNSGAIPIFVQLLRDRSSEVREKVSGAI 356

Query: 364 AQLSYNEADRVALADAGAVPIMIELLHDESEELRDNAAESLINFSEDPLQHERISEAIGI 423
           AQLSY+  DR ALA+AGA+P++I+LL DESEELR+NAAE+LI+FSEDP Q   +SEA  +
Sbjct: 357 AQLSYSAGDRAALAEAGAIPVLIDLLGDESEELRENAAEALISFSEDPSQRGIMSEAFRV 416

Query: 424 PSFQSMQSRLTRIRASDDLMARSMRRMSIEQLTWDPDL 461
            SFQ MQ+RL +IR+SD+ MARS+R+MS+EQL WDPD+
Sbjct: 417 TSFQEMQNRLVQIRSSDEYMARSLRQMSMEQLLWDPDM 454

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297737543|emb|CBI26744.3| unnamed protein product [Vitis vinifera]

 Score =  540 bits (1391), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 283/458 (61%), Positives = 346/458 (75%), Gaps = 6/458 (1%)

Query: 5   DTNWEEAFNRFEQAVVSGSEALQVKALTKLARVSKFAPQDILAATIPILARLLGENNFSG 64
            T+WEE+F  FE+ V SG  A+Q++A+ KLAR+S  AP  +L  T+PIL RLLG ++   
Sbjct: 2   STSWEESFELFEKVVASGRNAMQIRAIIKLARLSNSAPAHVLTRTVPILTRLLGSSS--- 58

Query: 65  NLTRSIQQAAAYCLKQIASQADG-ALATEIGQSGVINSVLRLFPQSDDSFRTVLVKCLRV 123
             + S+Q A+AYCLK IA Q DG  +A  IGQ G I   LRL   S+ SF+ VLVKCL  
Sbjct: 59  --SPSVQGASAYCLKCIAHQGDGDRMAILIGQYGAIPIALRLLQHSEGSFQRVLVKCLWS 116

Query: 124 FVTFGNENRVIVARNGGLEIVIDLLNSCNDGTRRYLLEILSALALLREVRRVLICLGGLR 183
            V FG  NRVI+ RNGGLEI+I +L S     R+YLLEILSALALLREVRRV+I L GLR
Sbjct: 117 LVIFGKHNRVILVRNGGLEIIIRMLGSYTGRMRQYLLEILSALALLREVRRVIISLEGLR 176

Query: 184 YLVEAVSFGSMVSRERACQAIGLLAVTGRARRLLVELGVIPGLVELFHIGDWTTKLVAGN 243
           +LV+AV FG M SRERA  A+G L V  +ARR+LV+LG +  L+ELF  GD  TKLVAGN
Sbjct: 177 FLVQAVKFGGMASRERAAHAVGCLGVAKKARRVLVDLGAMHMLIELFREGDACTKLVAGN 236

Query: 244 TLGVVAAHVEYITPVAEAGAIPLYAELLQGPDSTGKEISEDVFCILAVSEANANAIAEHL 303
            LGV+++H+  I P A+AGAIPLY ELL+G D  GKEI+EDVFC+LAV+E NA AI EHL
Sbjct: 237 ALGVISSHIHCIRPFAQAGAIPLYVELLRGHDPIGKEIAEDVFCVLAVAEVNAVAITEHL 296

Query: 304 VRILREGDNEANAAAADVLWDLAGYKHSVPVIRNSGAIPILVNLLRGENDEVREKVSGAI 363
           V ILRE D+ A AAAAD+LWDL+ Y HSV  IRNSGAIPI V LLR  + EVREKVSGAI
Sbjct: 297 VEILRENDDVAKAAAADILWDLSSYHHSVSFIRNSGAIPIFVQLLRDRSSEVREKVSGAI 356

Query: 364 AQLSYNEADRVALADAGAVPIMIELLHDESEELRDNAAESLINFSEDPLQHERISEAIGI 423
           AQLSY+  DR ALA+AGA+P++I+LL DESEELR+NAAE+LI+FSEDP Q   +SEA  +
Sbjct: 357 AQLSYSAGDRAALAEAGAIPVLIDLLGDESEELRENAAEALISFSEDPSQRGIMSEAFRV 416

Query: 424 PSFQSMQSRLTRIRASDDLMARSMRRMSIEQLTWDPDL 461
            SFQ MQ+RL +IR+SD+ MARS+R+MS+EQL WDPD+
Sbjct: 417 TSFQEMQNRLVQIRSSDEYMARSLRQMSMEQLLWDPDM 454

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15231056|ref|NP_188652.1| armadillo/beta-catenin-like repeat-containing protein [Arabidopsis thaliana] gi|9293974|dbj|BAB01877.1| unnamed protein product [Arabidopsis thaliana] gi|134031926|gb|ABO45700.1| At3g20170 [Arabidopsis thaliana] gi|332642822|gb|AEE76343.1| armadillo/beta-catenin-like repeat-containing protein [Arabidopsis thaliana]

 Score =  512 bits (1318), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 274/465 (58%), Positives = 341/465 (73%), Gaps = 11/465 (2%)

Query: 3   NPDTNWEEAFNRFEQAVVSGSEALQVKALTKLARVSKFAPQDILAATIPILARLLGENNF 62
           NPD  WE  FNRFE A+ SGS +++V+++ KL+ ++   P+  ++  IPILA LL     
Sbjct: 15  NPD--WETEFNRFENAISSGSASIRVRSVLKLSDLTNRVPESYISRAIPILAGLL---RV 69

Query: 63  SGNLTRSIQQAAAYCLKQIASQA--DGALATEIGQSGVINSVLRLFPQSD---DSFRTVL 117
           S +  RS+Q AAA+CLK I      +   A  +G+ GVI S+L L  +++   + FR + 
Sbjct: 70  SDDSNRSVQAAAAHCLKCITCCGGEESGFAVTMGRCGVIASLLGLLLEANTDGNVFRRIW 129

Query: 118 VKCLRVFVTFGNENRVIVARNGGLEIVIDLLNSC-NDGTRRYLLEILSALALLREVRRVL 176
           VKCL   VTFG+  RV +AR GGLEIVI  LN+  +DG+R YLLEILSAL  +RE RRVL
Sbjct: 130 VKCLWSLVTFGSSIRVGLARLGGLEIVIRELNNWEDDGSRWYLLEILSALTTIRESRRVL 189

Query: 177 ICLGGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRARRLLVELGVIPGLVELFHIGDWT 236
           +  GGL++LVEA   G++ SRERAC AIGL+ VT RARR+LVE GVIP LV+L+  GD  
Sbjct: 190 VHSGGLKFLVEAAKVGNLASRERACHAIGLIGVTRRARRILVEAGVIPALVDLYRDGDDK 249

Query: 237 TKLVAGNTLGVVAAHVEYITPVAEAGAIPLYAELLQGPDSTGKEISEDVFCILAVSEANA 296
            KL+AGN LG+++A  EYI PV EAG+IPLY ELL G D  GK+I+EDVFCILAV+E NA
Sbjct: 250 AKLLAGNALGIISAQTEYIRPVTEAGSIPLYVELLSGQDPMGKDIAEDVFCILAVAEGNA 309

Query: 297 NAIAEHLVRILREGDNEANAAAADVLWDLAGYKHSVPVIRNSGAIPILVNLLRGENDEVR 356
             IAE LVRILR GDNEA  AA+DVLWDLAGY+HSV VIR SGAIP+L+ LLR  + E R
Sbjct: 310 VLIAEQLVRILRAGDNEAKLAASDVLWDLAGYRHSVSVIRGSGAIPLLIELLRDGSLEFR 369

Query: 357 EKVSGAIAQLSYNEADRVALADAGAVPIMIELLHDESEELRDNAAESLINFSEDPLQHER 416
           E++SGAI+QLSYNE DR A +D+G +PI+IE L DESEELRDNAAE+LINFSED   + R
Sbjct: 370 ERISGAISQLSYNENDREAFSDSGMIPILIEWLGDESEELRDNAAEALINFSEDQEHYAR 429

Query: 417 ISEAIGIPSFQSMQSRLTRIRASDDLMARSMRRMSIEQLTWDPDL 461
           + EAIG P FQSMQSRL RIRAS +LM RSMRR++I+ L  D DL
Sbjct: 430 VREAIGHPVFQSMQSRLARIRASHELMVRSMRRVTIQHLAHDHDL 474

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297830702|ref|XP_002883233.1| armadillo/beta-catenin repeat family protein [Arabidopsis lyrata subsp. lyrata] gi|297329073|gb|EFH59492.1| armadillo/beta-catenin repeat family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  511 bits (1316), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 273/465 (58%), Positives = 343/465 (73%), Gaps = 11/465 (2%)

Query: 3   NPDTNWEEAFNRFEQAVVSGSEALQVKALTKLARVSKFAPQDILAATIPILARLLGENNF 62
           NPD  WE  FNRFE A+ SGS A++V+++ KL+ ++   P+  ++ +IPILA L+     
Sbjct: 15  NPD--WETEFNRFENAISSGSAAIRVRSVLKLSALTNRVPERYISLSIPILAGLI---RV 69

Query: 63  SGNLTRSIQQAAAYCLKQIASQA--DGALATEIGQSGVINSVLRLFPQSDDS---FRTVL 117
           S +  RS+Q AAA+CLK+IA     +   A  +G+ GVI S+L L  +++ +   FR + 
Sbjct: 70  SDDSNRSVQAAAAHCLKRIACCGGEENGFAVTMGRCGVIASLLGLLLEANTNGNVFRRIW 129

Query: 118 VKCLRVFVTFGNENRVIVARNGGLEIVIDLLNSC-NDGTRRYLLEILSALALLREVRRVL 176
           VKCL   VTFG+  R+ +AR GGLEIVI  LN+  +DG+R YLLEILSAL  +RE RRVL
Sbjct: 130 VKCLWSLVTFGSSIRIGLARLGGLEIVIRELNNWEDDGSRWYLLEILSALTTIRESRRVL 189

Query: 177 ICLGGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRARRLLVELGVIPGLVELFHIGDWT 236
           +  GGL++LVEA   G++ SRERAC AIGL+ VT RARR+LVE GVIP LV+L+  G   
Sbjct: 190 VHSGGLKFLVEAAKVGNLASRERACHAIGLIGVTRRARRMLVEAGVIPALVDLYRDGFDK 249

Query: 237 TKLVAGNTLGVVAAHVEYITPVAEAGAIPLYAELLQGPDSTGKEISEDVFCILAVSEANA 296
            KL+AGN LG+++A  EYI PV EAG+IPLY ELL G D  GK+I+EDVFCILAV+E NA
Sbjct: 250 AKLLAGNALGIISAQTEYIRPVTEAGSIPLYVELLSGQDPMGKDIAEDVFCILAVAEGNA 309

Query: 297 NAIAEHLVRILREGDNEANAAAADVLWDLAGYKHSVPVIRNSGAIPILVNLLRGENDEVR 356
             IAE LVRILREGDN+A  AA+DVLWDLAGY+HSV VIR SGAIP+L+ LLR    E R
Sbjct: 310 VLIAEQLVRILREGDNDAKLAASDVLWDLAGYRHSVSVIRESGAIPLLIELLRDGTLEFR 369

Query: 357 EKVSGAIAQLSYNEADRVALADAGAVPIMIELLHDESEELRDNAAESLINFSEDPLQHER 416
           E++SGAI+QLSYNE DR A +D+G +PI+IE L DESEELRDNAAE+LINFSED   + R
Sbjct: 370 ERISGAISQLSYNENDREAFSDSGMIPILIEWLGDESEELRDNAAEALINFSEDQEHYAR 429

Query: 417 ISEAIGIPSFQSMQSRLTRIRASDDLMARSMRRMSIEQLTWDPDL 461
           + EAIG P FQSMQSRL RIRAS +LM RSMRR++IE L  + DL
Sbjct: 430 VREAIGHPVFQSMQSRLARIRASHELMVRSMRRVTIEHLAHNHDL 474

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147858500|emb|CAN83508.1| hypothetical protein VITISV_006363 [Vitis vinifera]

 Score =  509 bits (1312), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 270/462 (58%), Positives = 343/462 (74%), Gaps = 12/462 (2%)

Query: 7   NWEEAFNRFEQAVVSGSEALQVKALTKLARVSKFAPQDILAATIPILARLLGENNFSGNL 66
           +WEE+FN FE+AV S S A+Q++A+ K+A++S +AP ++L   +PIL +LLG     G+ 
Sbjct: 14  DWEESFNLFEEAVASESTAMQIQAIIKVAQLSNYAPDNVLTRAVPILTQLLG-----GSS 68

Query: 67  TRSIQQAAAYCLKQIASQAD--GALATEIGQSGVINSVLRLFPQSDDSFRTVLVKCLRVF 124
           +  +Q+AAAYCLK IA Q D    LAT IGQSG I   LRL   S    + VLVK L   
Sbjct: 69  SPLVQEAAAYCLKCIAHQGDLDDRLATLIGQSGAIPITLRLLQHSHGGLQGVLVKFLWSI 128

Query: 125 VTFGNENRVIVARNGGLEIVIDLLNSCNDGTRRYLLEILSALALLREVRRVLICLGGLRY 184
           VTFG  NRVIV RNGGLE++I++L SC   TRR+LLEILSAL  LREVRRV+    GL++
Sbjct: 129 VTFGTHNRVIVVRNGGLEVIINMLGSCVGSTRRHLLEILSALVWLREVRRVITSPEGLQF 188

Query: 185 LVEAVSFGSMVSRERACQAIGLLAVTGRARRLLVELGVIPGLVELFHIGDWTTKLVAGNT 244
           LVEAV FG M SRERA  A+G L V   AR +LV+LG +  L+EL   GD + KLVAGN 
Sbjct: 189 LVEAVKFGGMASRERAAYAVGSLGVARSARTVLVDLGAMQALMELLREGDISAKLVAGNA 248

Query: 245 LGVVAAHVEYITPVAEAGAIPLYAELLQGPDSTGKEISEDVFCILAVSEANANAIAEHLV 304
           LGV++AHV+ I P+A+AGAIPLYAELL+G +  GKEI+EDVFC+LA++E NA +IA+HL 
Sbjct: 249 LGVISAHVDCIRPLAQAGAIPLYAELLRGAEPVGKEIAEDVFCVLAIAEVNAVSIAQHLA 308

Query: 305 RILREGDNEANAAAADVLWDLAGYKHSVPVIRNSGAIPILVNLLRGENDEVREKVSGAIA 364
           +ILRE D+ A AAAA++L  L+ YKHSVP I NSGAIP+LV LLR  +DEV+EK SGAIA
Sbjct: 309 QILRENDDIAKAAAAEILGHLSRYKHSVPFITNSGAIPVLVELLRQGSDEVKEKASGAIA 368

Query: 365 QLSYNEADRVALADAGAVPIMIELL-HDESEELRDNAAESLINFSEDPLQHERISEAIGI 423
           QLSYN  DR ALADAGA+PI+++LL  D+SEELR+ AAE+LI+FSEDP Q +RISEA  I
Sbjct: 369 QLSYNAGDRAALADAGAIPILMDLLGDDQSEELRNKAAEALISFSEDPSQRDRISEAFNI 428

Query: 424 PSFQSMQSRLTRIRASD---DLMARSMRR-MSIEQLTWDPDL 461
            SFQ + +RL ++RA D   + MAR  R+ MS+EQL WDP++
Sbjct: 429 TSFQDIHNRLAQLRAPDNNGEQMARPSRQMMSMEQLPWDPNI 470

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225460755|ref|XP_002276126.1| PREDICTED: vacuolar protein 8 [Vitis vinifera] gi|297737544|emb|CBI26745.3| unnamed protein product [Vitis vinifera]

 Score =  506 bits (1304), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 269/462 (58%), Positives = 343/462 (74%), Gaps = 12/462 (2%)

Query: 7   NWEEAFNRFEQAVVSGSEALQVKALTKLARVSKFAPQDILAATIPILARLLGENNFSGNL 66
           +WEE+FN FE+AV S S A+Q++A+ K+A++S +AP ++L   +PIL +LLG     G+ 
Sbjct: 14  DWEESFNLFEEAVASESTAMQIQAIIKVAQLSNYAPDNVLTRAVPILTQLLG-----GSS 68

Query: 67  TRSIQQAAAYCLKQIASQAD--GALATEIGQSGVINSVLRLFPQSDDSFRTVLVKCLRVF 124
           +  +Q+AAAYCLK IA Q D    LAT IGQSG I   LRL   S    + VLVK L   
Sbjct: 69  SPLVQEAAAYCLKCIAHQGDLDDRLATLIGQSGAIPITLRLLQHSHGGLQGVLVKFLWSI 128

Query: 125 VTFGNENRVIVARNGGLEIVIDLLNSCNDGTRRYLLEILSALALLREVRRVLICLGGLRY 184
           VTFG  NRVIV RNGGLE++I++L SC   TRR+LLEILSAL  LREVRRV+    GL++
Sbjct: 129 VTFGTHNRVIVVRNGGLEVIINMLGSCVGSTRRHLLEILSALVWLREVRRVITSPEGLQF 188

Query: 185 LVEAVSFGSMVSRERACQAIGLLAVTGRARRLLVELGVIPGLVELFHIGDWTTKLVAGNT 244
           LVEAV FG M SRERA  A+G L V   AR +LV+LG +  L+EL   GD + KLVAGN 
Sbjct: 189 LVEAVKFGGMASRERAAYAVGSLGVARSARTVLVDLGAMQALMELLREGDISAKLVAGNA 248

Query: 245 LGVVAAHVEYITPVAEAGAIPLYAELLQGPDSTGKEISEDVFCILAVSEANANAIAEHLV 304
           LGV++A+V+ I P+A+AGAIPLYAELL+G +  GKEI+EDVFC+LA++E NA +IA+HL 
Sbjct: 249 LGVISANVDCIRPLAQAGAIPLYAELLRGAEPVGKEIAEDVFCVLAIAEVNAVSIAQHLA 308

Query: 305 RILREGDNEANAAAADVLWDLAGYKHSVPVIRNSGAIPILVNLLRGENDEVREKVSGAIA 364
           +ILRE D+ A AAAA++L  L+ YKHSVP I NSGAIP+LV LLR  +DEV+EK SGAIA
Sbjct: 309 QILRENDDIAKAAAAEILGHLSRYKHSVPFITNSGAIPVLVELLRQGSDEVKEKASGAIA 368

Query: 365 QLSYNEADRVALADAGAVPIMIELL-HDESEELRDNAAESLINFSEDPLQHERISEAIGI 423
           QLSYN  DR ALADAGA+PI+++LL  D+SEELR+ AAE+LI+FSEDP Q +RISEA  I
Sbjct: 369 QLSYNAGDRAALADAGAIPILMDLLGDDQSEELRNKAAEALISFSEDPSQRDRISEAFNI 428

Query: 424 PSFQSMQSRLTRIRASD---DLMARSMRR-MSIEQLTWDPDL 461
            SFQ + +RL ++RA D   + MAR  R+ MS+EQL WDP++
Sbjct: 429 TSFQDIHNRLAQLRAPDNNGEQMARPSRQMMSMEQLPWDPNI 470

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449465503|ref|XP_004150467.1| PREDICTED: armadillo repeat-containing protein 4-like [Cucumis sativus]

 Score =  499 bits (1284), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 253/459 (55%), Positives = 342/459 (74%), Gaps = 1/459 (0%)

Query: 3   NPDTNWEEAFNRFEQAVVSGSEALQVKALTKLARVSKFAPQDILAATIPILARLLGENNF 62
            P+ +WE +  ++E  + S SEAL+VKA  KLA++SK AP++IL + IPI+A+ L E+N 
Sbjct: 12  KPNLDWEASLKQYENVMASESEALKVKATIKLAQLSKIAPENILKSVIPIIAKPL-EDNP 70

Query: 63  SGNLTRSIQQAAAYCLKQIASQADGALATEIGQSGVINSVLRLFPQSDDSFRTVLVKCLR 122
           + N ++S++ AAAYCL+ I+ + DG LAT +G SG + S+++    S   F  +LVKC+ 
Sbjct: 71  TNNASQSMRAAAAYCLRCISCRGDGTLATAVGHSGALESLVKSLLHSSGCFCKILVKCIW 130

Query: 123 VFVTFGNENRVIVARNGGLEIVIDLLNSCNDGTRRYLLEILSALALLREVRRVLICLGGL 182
             VTF   +RVI+ARNGGLE++I +L    DGTRRYLLEILSA+ALLREVR+ LI   GL
Sbjct: 131 SIVTFDQSSRVIIARNGGLEVIICMLVLVIDGTRRYLLEILSAMALLREVRKALIRSRGL 190

Query: 183 RYLVEAVSFGSMVSRERACQAIGLLAVTGRARRLLVELGVIPGLVELFHIGDWTTKLVAG 242
            +LV+A  FG M SRERAC+AIGL+A+T R R  LVELGV+P L+EL   GD+ TKLVAG
Sbjct: 191 PFLVQAARFGCMASRERACEAIGLIAITKRGRNKLVELGVVPVLIELLREGDYVTKLVAG 250

Query: 243 NTLGVVAAHVEYITPVAEAGAIPLYAELLQGPDSTGKEISEDVFCILAVSEANANAIAEH 302
           NTLG+V+AH+ YI PVA+AGAIPL+A+LLQ  D   KEI+EDVFC+LAV+E NA  I +H
Sbjct: 251 NTLGIVSAHLAYIRPVAQAGAIPLFADLLQWSDPICKEIAEDVFCLLAVAETNAVVIFDH 310

Query: 303 LVRILREGDNEANAAAADVLWDLAGYKHSVPVIRNSGAIPILVNLLRGENDEVREKVSGA 362
           LV++L+EGD+   AAAADVL  L+ YK+S+ V++NSGAIP+LV+LL   N EVREKVSGA
Sbjct: 311 LVKVLKEGDDRGKAAAADVLRILSSYKYSISVVQNSGAIPVLVDLLHDGNHEVREKVSGA 370

Query: 363 IAQLSYNEADRVALADAGAVPIMIELLHDESEELRDNAAESLINFSEDPLQHERISEAIG 422
           IA+LS  E DRVALADAGA+  +I LL D+ E+++ N  E++ +FS+DPL   R++EAI 
Sbjct: 371 IARLSCYETDRVALADAGAIQGLIGLLQDDLEKVKLNVTEAVTSFSKDPLYCTRVAEAIS 430

Query: 423 IPSFQSMQSRLTRIRASDDLMARSMRRMSIEQLTWDPDL 461
            P+FQ++Q R+T IRA++     S+ ++ I Q T+D DL
Sbjct: 431 TPAFQNLQERITHIRAAEWQSMVSVHQLGINQFTFDLDL 469

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449522201|ref|XP_004168116.1| PREDICTED: LOW QUALITY PROTEIN: armadillo repeat-containing protein 4-like [Cucumis sativus]

 Score =  498 bits (1283), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 253/459 (55%), Positives = 342/459 (74%), Gaps = 1/459 (0%)

Query: 3   NPDTNWEEAFNRFEQAVVSGSEALQVKALTKLARVSKFAPQDILAATIPILARLLGENNF 62
            P+ +WE +  ++E  + S SEAL+VKA  KLA++SK AP++IL + IPI+A+ L E+N 
Sbjct: 12  KPNLDWEASLKQYENVMASESEALKVKATIKLAQLSKIAPENILKSVIPIIAKPL-EDNP 70

Query: 63  SGNLTRSIQQAAAYCLKQIASQADGALATEIGQSGVINSVLRLFPQSDDSFRTVLVKCLR 122
           + N ++S++ AAAYCL+ I+ + DG LAT +G SG + S+++    S   F  +LVKC+ 
Sbjct: 71  TNNASQSMRAAAAYCLRCISCRGDGTLATAVGHSGALESLVKSLLHSSXLFCKILVKCIW 130

Query: 123 VFVTFGNENRVIVARNGGLEIVIDLLNSCNDGTRRYLLEILSALALLREVRRVLICLGGL 182
             VTF   +RVI+ARNGGLE++I +L    DGTRRYLLEILSA+ALLREVR+ LI   GL
Sbjct: 131 SIVTFDQSSRVIIARNGGLEVIICMLVLVIDGTRRYLLEILSAMALLREVRKALIRSRGL 190

Query: 183 RYLVEAVSFGSMVSRERACQAIGLLAVTGRARRLLVELGVIPGLVELFHIGDWTTKLVAG 242
            +LV+A  FG M SRERAC+AIGL+A+T R R  LVELGV+P L+EL   GD+ TKLVAG
Sbjct: 191 PFLVQAARFGCMASRERACEAIGLIAITKRGRNKLVELGVVPVLIELLREGDYVTKLVAG 250

Query: 243 NTLGVVAAHVEYITPVAEAGAIPLYAELLQGPDSTGKEISEDVFCILAVSEANANAIAEH 302
           NTLG+V+AH+ YI PVA+AGAIPL+A+LLQ  D   KEI+EDVFC+LAV+E NA  I +H
Sbjct: 251 NTLGIVSAHLAYIRPVAQAGAIPLFADLLQWSDPICKEIAEDVFCLLAVAETNAVVIFDH 310

Query: 303 LVRILREGDNEANAAAADVLWDLAGYKHSVPVIRNSGAIPILVNLLRGENDEVREKVSGA 362
           LV++L+EGD+   AAAADVL  L+ YK+S+ V++NSGAIP+LV+LL   N EVREKVSGA
Sbjct: 311 LVKVLKEGDDRGKAAAADVLRILSSYKYSISVVQNSGAIPVLVDLLHDGNHEVREKVSGA 370

Query: 363 IAQLSYNEADRVALADAGAVPIMIELLHDESEELRDNAAESLINFSEDPLQHERISEAIG 422
           IA+LS  E DRVALADAGA+  +I LL D+ E+++ N  E++ +FS+DPL   R++EAI 
Sbjct: 371 IARLSCYETDRVALADAGAIQGLIGLLQDDLEKVKLNVTEAVTSFSKDPLYCTRVAEAIS 430

Query: 423 IPSFQSMQSRLTRIRASDDLMARSMRRMSIEQLTWDPDL 461
            P+FQ++Q R+T IRA++     S+ ++ I Q T+D DL
Sbjct: 431 TPAFQNLQERITHIRAAEWQSMVSVHQLGINQFTFDLDL 469

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	461
TAIR|locus:2087565	475	AT3G20170 [Arabidopsis thalian	0.984	0.955	0.526	8.4e-113
UNIPROTKB|E1C8F9	876	E1C8F9 "Uncharacterized protei	0.746	0.392	0.212	1.2e-09
TAIR|locus:2103351	928	ARABIDILLO-2 "AT3G60350" [Arab	0.657	0.326	0.235	2.8e-08
TAIR|locus:2178818	357	AT5G58680 "AT5G58680" [Arabido	0.514	0.663	0.226	1.2e-07
TAIR|locus:2045334	829	PUB4 "plant U-box 4" [Arabidop	0.468	0.260	0.258	3.9e-07
TAIR|locus:2055033	930	ARABIDILLO-1 "AT2G44900" [Arab	0.657	0.325	0.235	4.5e-07
TAIR|locus:2154124	559	AT5G62560 [Arabidopsis thalian	0.216	0.178	0.313	4.6e-06
TAIR|locus:2082682	632	PUB14 "plant U-box 14" [Arabid	0.229	0.167	0.355	5.5e-06
TAIR|locus:2096687	355	AT3G01400 [Arabidopsis thalian	0.438	0.569	0.245	5.8e-06
ZFIN|ZDB-GENE-980526-362	780	ctnnb1 "catenin (cadherin-asso	0.182	0.107	0.309	9e-06

TAIR|locus:2087565 AT3G20170 [Arabidopsis thaliana (taxid:3702)]

 Score = 1113 (396.9 bits), Expect = 8.4e-113, P = 8.4e-113
 Identities = 245/465 (52%), Positives = 309/465 (66%)

Query:     3 NPDTNWEEAFNRFEQAVVSGSEALQVKALTKLARVSKFAPQDILAATIPILARLLGENNF 62
             NPD  WE  FNRFE A+ SGS +++V+++ KL+ ++   P+  ++  IPILA LL     
Sbjct:    15 NPD--WETEFNRFENAISSGSASIRVRSVLKLSDLTNRVPESYISRAIPILAGLL---RV 69

Query:    63 SGNLTRSIQQAAAYCLKQIA--SQADGALATEIGQSGVINSVLRLFPQSDDS---FRTVL 117
             S +  RS+Q AAA+CLK I      +   A  +G+ GVI S+L L  +++     FR + 
Sbjct:    70 SDDSNRSVQAAAAHCLKCITCCGGEESGFAVTMGRCGVIASLLGLLLEANTDGNVFRRIW 129

Query:   118 VKCLRVFVTFGNENRVIVARNGGLEIVIDLLNSC-NDGTRRYXXXXXXXXXXXXXXXXXX 176
             VKCL   VTFG+  RV +AR GGLEIVI  LN+  +DG+R Y                  
Sbjct:   130 VKCLWSLVTFGSSIRVGLARLGGLEIVIRELNNWEDDGSRWYLLEILSALTTIRESRRVL 189

Query:   177 ICLGGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRARRLLVELGVIPGLVELFHIGDWT 236
             +  GGL++LVEA   G++ SRERAC AIGL+ VT RARR+LVE GVIP LV+L+  GD  
Sbjct:   190 VHSGGLKFLVEAAKVGNLASRERACHAIGLIGVTRRARRILVEAGVIPALVDLYRDGDDK 249

Query:   237 TKLVAGNTLGVVAAHVEYITPVAEAGAIPLYAELLQGPDSTGKEISEDVFCILAVSEANA 296
              KL+AGN LG+++A  EYI PV EAG+IPLY ELL G D  GK+I+EDVFCILAV+E NA
Sbjct:   250 AKLLAGNALGIISAQTEYIRPVTEAGSIPLYVELLSGQDPMGKDIAEDVFCILAVAEGNA 309

Query:   297 NAIAEHLVRILRXXXXXXXXXXXXXXXXXXXYKHSVPVIRNSGAIPILVNLLRGENDEVR 356
               IAE LVRILR                   Y+HSV VIR SGAIP+L+ LLR  + E R
Sbjct:   310 VLIAEQLVRILRAGDNEAKLAASDVLWDLAGYRHSVSVIRGSGAIPLLIELLRDGSLEFR 369

Query:   357 EKVSGAIAQLSYNEADRVALADAGAVPIMIELLHDESEELRDNAAESLINFSEDPLQHER 416
             E++SGAI+QLSYNE DR A +D+G +PI+IE L DESEELRDNAAE+LINFSED   + R
Sbjct:   370 ERISGAISQLSYNENDREAFSDSGMIPILIEWLGDESEELRDNAAEALINFSEDQEHYAR 429

Query:   417 ISEAIGIPSFQSMQSRLTRIRASDDLMARSMRRMSIEQLTWDPDL 461
             + EAIG P FQSMQSRL RIRAS +LM RSMRR++I+ L  D DL
Sbjct:   430 VREAIGHPVFQSMQSRLARIRASHELMVRSMRRVTIQHLAHDHDL 474

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|E1C8F9 E1C8F9 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 173 (66.0 bits), Expect = 1.2e-09, P = 1.2e-09
 Identities = 76/358 (21%), Positives = 145/358 (40%)

Query:    64 GNLTRSIQQAAAYCLKQIASQADGALATEIGQSGVINSVLRLFPQSDDSFRTVLVKCLRV 123
             G+    + + +  C+  +  +     A  + +  VI  +L L        + + +K L V
Sbjct:   160 GSPDPDVTKNSVECIYLLVQEFQSRAA--VCELNVIPPLLDLLKSEYPVIQLLALKTLEV 217

Query:   124 FVTFGNENRVIVARNGGLEIVIDLLNSCNDGTRRYXXXXXXXXXXXXXXXXXXIC--LGG 181
              ++   E R+I+  N GL+ ++ +L + N+    +                  +    GG
Sbjct:   218 -ISKDREMRIILGENEGLDCLLKILET-NEFNDLHVEALAVLGNCLEDVHTMQLIRQTGG 275

Query:   182 LRYLVEAVSFGSMVS-RERACQAIGLLAVTGRARRLLVELGVIPGLVELFHIGDWTTKLV 240
             L+ L+  V   ++   ++ A +AI   A     R++L E  V   L+ L  I D   K+ 
Sbjct:   276 LKKLLSFVGVSTVPDIQKNAAKAIAKAASDSENRKILNEEDVESCLINLLEIDDDGVKVA 335

Query:   241 AGNTLGVVAAHVEYITPVAEAGAIPLYAELLQGPDSTGKEISEDVFCILAV-SEANANAI 299
             A   +  +  ++         G IP   +LL   D   KE +      L   S +NA+A+
Sbjct:   336 ASQAISAMCENLASKRAFGLQG-IPQLVQLLSSDDEEVKEAAVIALANLTTASPSNASAV 394

Query:   300 AEH-----LVRILRXXXXXXXXXXXXXXXXXXXYKHSVPVIRNSGAIPILVNLLRGENDE 354
             AE      LV+ L                     +     I++ G + +L   LR  + +
Sbjct:   395 AEAEGIEPLVKSLNAERHGAVANAATVLTNMAMQEPLRLSIQSHGVMSVLTEPLRSSSSQ 454

Query:   355 VREKVSGAIAQLSYNEADRVALADAGAVPIMIELLHDESEELRDNAAESLINFSEDPL 412
             V+ + +  +A    +   R  L +AG +  ++ELLH + +E+R NA  +++  + D L
Sbjct:   455 VQSRAALTVAAFGCDANARSELRNAGGLGPLVELLHSKDKEVRRNACWAVMVCASDEL 512

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0030117 "membrane coat" evidence=IEA

TAIR|locus:2103351 ARABIDILLO-2 "AT3G60350" [Arabidopsis thaliana (taxid:3702)]

 Score = 161 (61.7 bits), Expect = 2.8e-08, P = 2.8e-08
 Identities = 77/327 (23%), Positives = 136/327 (41%)

Query:   135 VARNGGLEIVIDLLNSCNDGTRRYXXXXXXXXXXXXXXXXXXICLGGLRYLVE-AVSFGS 193
             V R+GG+ ++++L  S  +G +                       GG+  L + A S   
Sbjct:   425 VMRDGGIRLLLELAKSWREGLQSEAAKAIANLSVNAKVAKAVAEEGGISVLADLAKSMNR 484

Query:   194 MVSRERACQAIGLLAVTGRARRLLVELGVIPGLVELF----HIGDWTTKLVAGNTLGVVA 249
             +V+ E A   +  L+V    +  + + G +  LV+L     H  D   +  AG  L  +A
Sbjct:   485 LVAEE-AAGGLWNLSVGEEHKNAIAQAGGVNALVDLIFRWPHGCDGVLERAAG-ALANLA 542

Query:   250 AHVEYITPVAEAGAIPLYAELLQGPDSTG-KEISEDVFCILAV-SEANANAIA------- 300
             A  +    VA AG +     L +     G +E +      LA   ++N N  A       
Sbjct:   543 ADDKCSMEVARAGGVHALVMLARNCKYEGAQEQAARALANLAAHGDSNGNNAAVGQEAGA 602

Query:   301 -EHLVRILRXXXXXXXXXXXXXXXXXXXYKHSVPVIRNSGAIPILVNLLRGENDE---VR 356
              E LV++ +                      +   I   G +  LV L +  ++    ++
Sbjct:   603 LEALVQLTQSPHEGVKQEAAGALWNLAFDDKNRESIAAFGGVEALVALAKSSSNASTGLQ 662

Query:   357 EKVSGAIAQLSYNEADRVALADAGAVPIMIELLHDESEELRDNAAESLINFSEDPLQHER 416
             E+V+GA+  LS +EA+ +A+   G +P +I L+  E+E++ + AA +L N S +P    R
Sbjct:   663 ERVAGALWGLSVSEANSIAIGHEGGIPPLIALVRSEAEDVHETAAGALWNLSFNPGNALR 722

Query:   417 ISEAIGIPSF----QSMQSRLTRIRAS 439
             I E  G+ +      S  S++ R  A+
Sbjct:   723 IVEEGGVVALVQLCSSSVSKMARFMAA 749

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=ISS

GO:0048527 "lateral root development" evidence=IGI;IMP

TAIR|locus:2178818 AT5G58680 "AT5G58680" [Arabidopsis thaliana (taxid:3702)]

 Score = 149 (57.5 bits), Expect = 1.2e-07, P = 1.2e-07
 Identities = 55/243 (22%), Positives = 96/243 (39%)

Query:   180 GGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRARRLLVELGVIPGLVELFHIGDWTTKL 239
             G ++ LV  +S   +  +E    A+  L++    + ++V  G +  LV    +G  TTK 
Sbjct:   103 GAIKPLVSLISSSDLQLQEYGVTAVLNLSLCDENKEMIVSSGAVKPLVNALRLGTPTTKE 162

Query:   240 VAGNTLGVVAAHVEYITPVAEAGAIPLYAELLQ-GPDSTGKEISEDVFCILAVSEANANA 298
              A   L  ++   E    +  +GAIPL   LL+ G     K+ S  ++ + + +E    A
Sbjct:   163 NAACALLRLSQVEENKITIGRSGAIPLLVNLLENGGFRAKKDASTALYSLCSTNENKTRA 222

Query:   299 ----IAEHLVRILRXXXXXXXXXXXXXXXXXXXYKHSVPVIRNSGAIPILVNLLRGENDE 354
                 I + LV ++                       S P +   G +P+LV ++      
Sbjct:   223 VESGIMKPLVELMIDFESDMVDKSAFVMNLLMSAPESKPAVVEEGGVPVLVEIVEAGTQR 282

Query:   355 VREKVSGAIAQLSYNEAD-RVALADAGAVPIMIELLHDESEELRDNAAESLINFSEDPLQ 413
              +E     + QL       R  +A  GAVP ++ L    +       AE+LI     P Q
Sbjct:   283 QKEISVSILLQLCEESVVYRTMVAREGAVPPLVALSQGSASRGAKVKAEALIELLRQPRQ 342

Query:   414 HER 416
              ++
Sbjct:   343 QQQ 345

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009693 "ethylene biosynthetic process" evidence=RCA

TAIR|locus:2045334 PUB4 "plant U-box 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 150 (57.9 bits), Expect = 3.9e-07, P = 3.9e-07
 Identities = 58/224 (25%), Positives = 96/224 (42%)

Query:   208 AVTGRARRLLVELGV-IPGLVELFHIGDWTTKLVAGNTLGVVAAH-VEYITPVAEAGAIP 265
             A +   RR L E+   +  LVE        T+  A   L ++A H ++    +  +GAI 
Sbjct:   530 APSNETRRDLSEVETQVKKLVEELKSSSLDTQRQATAELRLLAKHNMDNRIVIGNSGAIV 589

Query:   266 LYAELLQGPDSTGKEISEDVFCILAVSEANANAIA-----EHLVRILRXXXXXXXXXXXX 320
             L  ELL   DS  +E +      L++++ N  AIA     E L+ +L             
Sbjct:   590 LLVELLYSTDSATQENAVTALLNLSINDNNKKAIADAGAIEPLIHVLENGSSEAKENSAA 649

Query:   321 XXXXXXXYKHSVPVIRNSGAIPILVNLLRGENDEVREKVSGAIAQLSYNEADRVALADAG 380
                     + +   I  SGAI  LV+LL       ++  + A+  LS ++ ++  +  +G
Sbjct:   650 TLFSLSVIEENKIKIGQSGAIGPLVDLLGNGTPRGKKDAATALFNLSIHQENKAMIVQSG 709

Query:   381 AVPIMIELLHDESEELRDNAAESLINFSEDPLQHERISEAIGIP 424
             AV  +I+L+ D +  + D A   L N +  P     I +  GIP
Sbjct:   710 AVRYLIDLM-DPAAGMVDKAVAVLANLATIPEGRNAIGQEGGIP 752

GO:0000151 "ubiquitin ligase complex" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0005871 "kinesin complex" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=IEA

GO:0019894 "kinesin binding" evidence=IEA

TAIR|locus:2055033 ARABIDILLO-1 "AT2G44900" [Arabidopsis thaliana (taxid:3702)]

 Score = 150 (57.9 bits), Expect = 4.5e-07, P = 4.5e-07
 Identities = 77/327 (23%), Positives = 137/327 (41%)

Query:   135 VARNGGLEIVIDLLNSCNDGTRRYXXXXXXXXXXXXXXXXXXICLGGLRYLVE-AVSFGS 193
             V ++GG+ ++++L  S  +G +                       GG++ L   A S   
Sbjct:   434 VMKDGGIRLLLELAKSWREGLQSEAAKAIANLSVNANIAKSVAEEGGIKILAGLAKSMNR 493

Query:   194 MVSRERACQAIGLLAVTGRARRLLVELGVIPGLVELFHI---G-DWTTKLVAGNTLGVVA 249
             +V+ E A   +  L+V    +  + + G +  LV+L      G D   +  AG  L  +A
Sbjct:   494 LVAEE-AAGGLWNLSVGEEHKNAIAQAGGVKALVDLIFRWPNGCDGVLERAAG-ALANLA 551

Query:   250 AHVEYITPVAEAGAIPLYAELLQGPDSTG-KEISEDVFCILAV-SEANANAIA------- 300
             A  +    VA+AG +     L +     G +E +      LA   ++N N  A       
Sbjct:   552 ADDKCSMEVAKAGGVHALVMLARNCKYEGVQEQAARALANLAAHGDSNNNNAAVGQEAGA 611

Query:   301 -EHLVRILRXXXXXXXXXXXXXXXXXXXYKHSVPVIRNSGAIPILVNLLRGENDE---VR 356
              E LV++ +                      +   I  +G +  LV L +  ++    ++
Sbjct:   612 LEALVQLTKSPHEGVRQEAAGALWNLSFDDKNRESISVAGGVEALVALAQSCSNASTGLQ 671

Query:   357 EKVSGAIAQLSYNEADRVALADAGAVPIMIELLHDESEELRDNAAESLINFSEDPLQHER 416
             E+ +GA+  LS +EA+ VA+   G VP +I L   E+E++ + AA +L N + +P    R
Sbjct:   672 ERAAGALWGLSVSEANSVAIGREGGVPPLIALARSEAEDVHETAAGALWNLAFNPGNALR 731

Query:   417 ISEAIGIPSF----QSMQSRLTRIRAS 439
             I E  G+P+      S  S++ R  A+
Sbjct:   732 IVEEGGVPALVHLCSSSVSKMARFMAA 758

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0048527 "lateral root development" evidence=IGI;IMP

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2154124 AT5G62560 [Arabidopsis thaliana (taxid:3702)]

 Score = 138 (53.6 bits), Expect = 4.6e-06, P = 4.6e-06
 Identities = 32/102 (31%), Positives = 59/102 (57%)

Query:   329 KHSVPVIRNSGAIPILVNLLRGENDEVREKVSGAIAQLSYNEADRVALADAGAV-PIMIE 387
             ++ V ++R SG +P+L+++L+    E +E V+GA+  L+  + +++ +   GAV P++  
Sbjct:   308 QNKVKIVR-SGFVPLLIDVLKSGTTEAQEHVAGALFSLALEDENKMVIGVLGAVEPLLHA 366

Query:   388 LLHDESEELRDNAAESLINFSEDPLQHERISEAIGIPSFQSM 429
             L   ESE  R +AA +L + S  P    R+  A  +P+  SM
Sbjct:   367 LRSSESERARQDAALALYHLSLIPSNRTRLVRAGAVPTLLSM 408

GO:0000151 "ubiquitin ligase complex" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0005871 "kinesin complex" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=IEA

GO:0019894 "kinesin binding" evidence=IEA

TAIR|locus:2082682 PUB14 "plant U-box 14" [Arabidopsis thaliana (taxid:3702)]

 Score = 138 (53.6 bits), Expect = 5.5e-06, P = 5.5e-06
 Identities = 38/107 (35%), Positives = 56/107 (52%)

Query:   335 IRNSGAIPILVNLLRGENDEVREKVSGAIAQLSYNEADRVALADAGAVPIMIELLHDESE 394
             I  +GAIP+LV LL   +   +E    A+  LS NE ++ A+ DAGA+  ++E+L + S 
Sbjct:   383 IAEAGAIPLLVELLSSPDPRTQEHSVTALLNLSINEGNKGAIVDAGAITDIVEVLKNGSM 442

Query:   395 ELRDNAAESLINFSEDPLQHERISEAIGIPSFQSMQSRLTRIRASDD 441
             E R+NAA +L + S        I  A  I +  S+    TR R   D
Sbjct:   443 EARENAAATLFSLSVIDENKVAIGAAGAIQALISLLEEGTR-RGKKD 488

GO:0000151 "ubiquitin ligase complex" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA;IDA

GO:0005871 "kinesin complex" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=IEA;ISS

GO:0019894 "kinesin binding" evidence=IEA

GO:0070696 "transmembrane receptor protein serine/threonine kinase binding" evidence=IPI

GO:0005515 "protein binding" evidence=IPI

GO:0046777 "protein autophosphorylation" evidence=RCA

TAIR|locus:2096687 AT3G01400 [Arabidopsis thaliana (taxid:3702)]

 Score = 134 (52.2 bits), Expect = 5.8e-06, P = 5.8e-06
 Identities = 51/208 (24%), Positives = 93/208 (44%)

Query:    93 IGQSGVINSVLRLFPQSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLNSCN 152
             I  SG I  ++R       + +     C  + ++   EN+V + R+G + ++++LL +  
Sbjct:   142 IASSGAIKPLVRALKMGTPTAKENAA-CALLRLSQIEENKVAIGRSGAIPLLVNLLETGG 200

Query:   153 DGTRRYXXXXXXXXXXXXXXXXXXICLGGLRYLVEAVS-FGS-MVSRERACQAIGLLAVT 210
                ++                   +  G ++ LVE ++ FGS MV  +++   + LL   
Sbjct:   201 FRAKKDASTALYSLCSAKENKIRAVQSGIMKPLVELMADFGSNMV--DKSAFVMSLLMSV 258

Query:   211 GRARRLLVELGVIPGLVELFHIGDWTTKLVAGNTL-GVVAAHVEYITPVAEAGAIPLYAE 269
               ++  +VE G +P LVE+  +G    K +A + L  +    V Y T VA  GAIP    
Sbjct:   259 PESKPAIVEEGGVPVLVEIVEVGTQRQKEMAVSILLQLCEESVVYRTMVAREGAIPPLVA 318

Query:   270 LLQGPDSTGKEISEDVFCILAVSEANAN 297
             L Q   S  K+ +E +  +L    + +N
Sbjct:   319 LSQAGTSRAKQKAEALIELLRQPRSISN 346

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

ZFIN|ZDB-GENE-980526-362 ctnnb1 "catenin (cadherin-associated protein), beta 1" [Danio rerio (taxid:7955)]

 Score = 104 (41.7 bits), Expect = 9.0e-06, Sum P(3) = 9.0e-06
 Identities = 26/84 (30%), Positives = 41/84 (48%)

Query:   330 HSVPVIRNSGAIPILVNLLRGENDEVREKVSGAIAQLSYNEADRVALADAGAVPIMIELL 389
             H+  VIR    IP+ V LL    + ++   +G + +L+ ++    A+   GA   + ELL
Sbjct:   584 HNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELL 643

Query:   390 HDESEELRDNAAESLINFSEDPLQ 413
             H  +E +   AA  L   SED  Q
Sbjct:   644 HSRNEGVATYAAAVLFRMSEDKPQ 667

GO:0007398 "ectoderm development" evidence=IGI

GO:0072033 "renal vesicle formation" evidence=IBA

GO:0043627 "response to estrogen stimulus" evidence=IBA

GO:0060769 "positive regulation of epithelial cell proliferation involved in prostate gland development" evidence=IBA

GO:0007016 "cytoskeletal anchoring at plasma membrane" evidence=IBA

GO:0045743 "positive regulation of fibroblast growth factor receptor signaling pathway" evidence=IBA

GO:0016323 "basolateral plasma membrane" evidence=IBA

GO:0043410 "positive regulation of MAPK cascade" evidence=IBA

GO:0016337 "cell-cell adhesion" evidence=IBA

GO:0043587 "tongue morphogenesis" evidence=IBA

GO:0022009 "central nervous system vasculogenesis" evidence=IBA

GO:0045669 "positive regulation of osteoblast differentiation" evidence=IBA

GO:0051145 "smooth muscle cell differentiation" evidence=IBA

GO:0030902 "hindbrain development" evidence=IBA

GO:0005916 "fascia adherens" evidence=IBA

GO:0043198 "dendritic shaft" evidence=IBA

GO:0007160 "cell-matrix adhesion" evidence=IBA

GO:0072054 "renal outer medulla development" evidence=IBA

GO:0048617 "embryonic foregut morphogenesis" evidence=IBA

GO:0042475 "odontogenesis of dentin-containing tooth" evidence=IBA

GO:0072079 "nephron tubule formation" evidence=IBA

GO:0019901 "protein kinase binding" evidence=IBA

GO:0048489 "synaptic vesicle transport" evidence=IBA

GO:0045202 "synapse" evidence=IBA

GO:0060441 "epithelial tube branching involved in lung morphogenesis" evidence=IBA

GO:0043066 "negative regulation of apoptotic process" evidence=IBA

GO:0005829 "cytosol" evidence=IBA

GO:0009898 "internal side of plasma membrane" evidence=IBA

GO:0045671 "negative regulation of osteoclast differentiation" evidence=IBA

GO:0030027 "lamellipodium" evidence=IBA

GO:0050808 "synapse organization" evidence=IBA

GO:0007403 "glial cell fate determination" evidence=IBA

GO:0005198 "structural molecule activity" evidence=IBA

GO:0001658 "branching involved in ureteric bud morphogenesis" evidence=IBA

GO:0001702 "gastrulation with mouth forming second" evidence=IBA

GO:0003136 "negative regulation of heart induction by canonical Wnt receptor signaling pathway" evidence=IBA

GO:0003337 "mesenchymal to epithelial transition involved in metanephros morphogenesis" evidence=IBA

GO:0001569 "patterning of blood vessels" evidence=IBA

GO:0032331 "negative regulation of chondrocyte differentiation" evidence=IBA

GO:0031016 "pancreas development" evidence=IBA

GO:0001711 "endodermal cell fate commitment" evidence=IBA

GO:0009954 "proximal/distal pattern formation" evidence=IBA

GO:0045294 "alpha-catenin binding" evidence=IBA

GO:0005667 "transcription factor complex" evidence=IBA

GO:0003713 "transcription coactivator activity" evidence=IBA

GO:0031528 "microvillus membrane" evidence=IBA

GO:0009950 "dorsal/ventral axis specification" evidence=IBA

GO:0030326 "embryonic limb morphogenesis" evidence=IBA

GO:0043123 "positive regulation of I-kappaB kinase/NF-kappaB cascade" evidence=IBA

GO:0072053 "renal inner medulla development" evidence=IBA

GO:0030539 "male genitalia development" evidence=IBA

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IBA

GO:0014010 "Schwann cell proliferation" evidence=IBA

GO:0048599 "oocyte development" evidence=IBA

GO:0030018 "Z disc" evidence=IBA

GO:0045296 "cadherin binding" evidence=IDA

GO:0005938 "cell cortex" evidence=IDA

GO:0005913 "cell-cell adherens junction" evidence=IDA

GO:0030057 "desmosome" evidence=IDA

GO:0005902 "microvillus" evidence=IDA

GO:0016342 "catenin complex" evidence=IDA

GO:0000578 "embryonic axis specification" evidence=IMP

GO:0001889 "liver development" evidence=IGI

GO:0005915 "zonula adherens" evidence=IDA

GO:0048262 "determination of dorsal/ventral asymmetry" evidence=IMP;IDA

GO:0005634 "nucleus" evidence=IDA

GO:0005912 "adherens junction" evidence=IDA

GO:0014704 "intercalated disc" evidence=IDA

GO:0007155 "cell adhesion" evidence=IC

GO:0016020 "membrane" evidence=IDA

GO:0009953 "dorsal/ventral pattern formation" evidence=IGI

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00027196001 SubName- Full=Chromosome chr19 scaffold_4, whole genome shotgun sequence; (922 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	461
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	3e-12
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	4e-08
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	5e-08
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	2e-07
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	6e-07
PLN03200	2102	PLN03200, PLN03200, cellulose synthase-interactive	4e-05
smart00185	41	smart00185, ARM, Armadillo/beta-catenin-like repea	3e-04
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	9e-04
PLN03200	2102	PLN03200, PLN03200, cellulose synthase-interactive	0.001
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	0.002
pfam13646	88	pfam13646, HEAT_2, HEAT repeats	0.004

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score = 63.1 bits (154), Expect = 3e-12
 Identities = 32/111 (28%), Positives = 58/111 (52%), Gaps = 2/111 (1%)

Query: 301 EHLVRILREGDNEANAAAADVLWDLA-GYKHSVPVIRNSGAIPILVNLLRGENDEVREKV 359
             LV +L   D      AA  L +L+ G   ++  +  +G +P LV LL+ E++EV +  
Sbjct: 10  PALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAA 69

Query: 360 SGAIAQLSYNEAD-RVALADAGAVPIMIELLHDESEELRDNAAESLINFSE 409
             A+  L+    D ++ + +AG VP ++ LL   +E+++ NA  +L N + 
Sbjct: 70  LWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS 120

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score = 51.2 bits (123), Expect = 4e-08
 Identities = 24/79 (30%), Positives = 44/79 (55%), Gaps = 1/79 (1%)

Query: 334 VIRNSGAIPILVNLLRGENDEVREKVSGAIAQLSYNEAD-RVALADAGAVPIMIELLHDE 392
            +  +G +P LV+LL   ++ V+ + + A++ LS    D   A+ +AG +P +++LL  E
Sbjct: 2   AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSE 61

Query: 393 SEELRDNAAESLINFSEDP 411
            EE+   A  +L N +  P
Sbjct: 62  DEEVVKAALWALRNLAAGP 80

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score = 50.8 bits (122), Expect = 5e-08
 Identities = 26/118 (22%), Positives = 58/118 (49%), Gaps = 7/118 (5%)

Query: 50  IPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQADGALATEIGQSGVINSVLRLFPQS 109
           +P L  LL  ++ +      +Q+ AA+ L  +++  +      + ++G + ++++L    
Sbjct: 9   LPALVSLLSSSDEN------VQREAAWALSNLSAGNN-DNIQAVVEAGGLPALVQLLKSE 61

Query: 110 DDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLNSCNDGTRRYLLEILSALA 167
           D+      +  LR       +N++IV   GG+  +++LL+S N+  ++     LS LA
Sbjct: 62  DEEVVKAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score = 49.6 bits (119), Expect = 2e-07
 Identities = 37/154 (24%), Positives = 65/154 (42%), Gaps = 38/154 (24%)

Query: 216 LLVELGVIPGLVELFHIGDWTTKLVAGNTLGVVAAHV-EYITPVAEAGAIPLYAELLQGP 274
            +++ G +P LV L    D   +  A   L  ++A   + I  V EAG +P         
Sbjct: 2   AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLP--------- 52

Query: 275 DSTGKEISEDVFCILAVSEANANAIAEHLVRILREGDNEANAAAADVLWDLA-GYKHSVP 333
                                       LV++L+  D E   AA   L +LA G + +  
Sbjct: 53  ---------------------------ALVQLLKSEDEEVVKAALWALRNLAAGPEDNKL 85

Query: 334 VIRNSGAIPILVNLLRGENDEVREKVSGAIAQLS 367
           ++  +G +P LVNLL   N+++++  +GA++ L+
Sbjct: 86  IVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score = 47.7 bits (114), Expect = 6e-07
 Identities = 32/118 (27%), Positives = 47/118 (39%), Gaps = 2/118 (1%)

Query: 175 VLICLGGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRA-RRLLVELGVIPGLVELFHIG 233
            +I  GGL  LV  +S      +  A  A+  L+       + +VE G +P LV+L    
Sbjct: 2   AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSE 61

Query: 234 DWTTKLVAGNTLGVVAAHVEYITP-VAEAGAIPLYAELLQGPDSTGKEISEDVFCILA 290
           D      A   L  +AA  E     V EAG +P    LL   +   ++ +      LA
Sbjct: 62  DEEVVKAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|215629 PLN03200, PLN03200, cellulose synthase-interactive protein; Provisional

 Score = 45.9 bits (109), Expect = 4e-05
 Identities = 37/118 (31%), Positives = 65/118 (55%), Gaps = 12/118 (10%)

Query: 303 LVRILREGDNEANAAAADVLWDL-AGYKHSVPVIRNSGAIPILVNLLRGEND-EVREKVS 360
           LV++L  G+++A A AA +L  L   ++ S+  + ++GA+  L+ LL   N+  VR + +
Sbjct: 194 LVKLLSSGNSDAQANAASLLARLMMAFESSISKVLDAGAVKQLLKLLGQGNEVSVRAEAA 253

Query: 361 GAIAQLSYNEAD-RVALADAGAVPIMI--------ELLHDESEE-LRDNAAESLINFS 408
           GA+  LS    + + A+ADAG +P +I        E +  E  + L++NA  +L N  
Sbjct: 254 GALEALSSQSKEAKQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANIC 311

Length = 2102

>gnl|CDD|214547 smart00185, ARM, Armadillo/beta-catenin-like repeats

 Score = 37.8 bits (89), Expect = 3e-04
 Identities = 12/35 (34%), Positives = 24/35 (68%)

Query: 334 VIRNSGAIPILVNLLRGENDEVREKVSGAIAQLSY 368
            + ++G +P LV LL+ E++EV ++ + A++ LS 
Sbjct: 7   AVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS 41

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. Length = 41

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score = 38.8 bits (91), Expect = 9e-04
 Identities = 31/118 (26%), Positives = 54/118 (45%), Gaps = 2/118 (1%)

Query: 135 VARNGGLEIVIDLLNSCNDGTRRYLLEILSALAL-LREVRRVLICLGGLRYLVEAVSFGS 193
           V + GGL  ++ LL+S ++  +R     LS L+    +  + ++  GGL  LV+ +    
Sbjct: 3   VIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSED 62

Query: 194 MVSRERACQAIGLLAVTGRARRLLV-ELGVIPGLVELFHIGDWTTKLVAGNTLGVVAA 250
               + A  A+  LA      +L+V E G +P LV L    +   +  A   L  +A+
Sbjct: 63  EEVVKAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS 120

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|215629 PLN03200, PLN03200, cellulose synthase-interactive protein; Provisional

 Score = 41.2 bits (97), Expect = 0.001
 Identities = 57/241 (23%), Positives = 88/241 (36%), Gaps = 53/241 (21%)

Query: 221 GVIPGLVELFHIGDWTTKLVAGNTLGVVAAHVEYITPVAE-AGAIPLYAELLQGPDSTGK 279
           G IP LV+L   G    K  +   L  +  H E I    E AGA+P    LL+     G+
Sbjct: 488 GGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNGGPKGQ 547

Query: 280 EIS-----------------------------------EDVFCILAV--------SEANA 296
           EI+                                   + +  +L+V          + A
Sbjct: 548 EIAAKTLTKLVRTADAATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAA 607

Query: 297 NAIAEHLVRILREGDNEANAAAADVLWDLAGYKHSVPVIRNSGA----IPILVNLLRGEN 352
           N     L+++L     E    AA VL D+   +     +  S A    I   + LL    
Sbjct: 608 NDALRTLIQLLSSSKEETQEKAASVLADIFSSR---QDLCESLATDEIINPCIKLLTNNT 664

Query: 353 DEVREKVSGAIAQL--SYNEADRVALADAGAVPIMIELLHDESEELRDNAAESLINFSED 410
           + V  + + A+A L  S  E  +V+ A   A+  +I+L    S E+ + A  +L N   D
Sbjct: 665 EAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLSD 724

Query: 411 P 411
           P
Sbjct: 725 P 725

Length = 2102

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score = 37.7 bits (88), Expect = 0.002
 Identities = 27/121 (22%), Positives = 53/121 (43%), Gaps = 7/121 (5%)

Query: 92  EIGQSGVINSVLRLFPQSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLNSC 151
            + Q+G + +++ L   SD++ +      L       N+N   V   GGL  ++ LL S 
Sbjct: 2   AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSE 61

Query: 152 NDGTRRYLLEILSALALL----REVRRVLICLGGLRYLVEAVSFGSMVSRERACQAIGLL 207
           ++   +     L AL  L     + + +++  GG+  LV  +   +   ++ A  A+  L
Sbjct: 62  DEEVVKA---ALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNL 118

Query: 208 A 208
           A
Sbjct: 119 A 119

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|222285 pfam13646, HEAT_2, HEAT repeats

 Score = 36.2 bits (84), Expect = 0.004
 Identities = 32/106 (30%), Positives = 49/106 (46%), Gaps = 22/106 (20%)

Query: 301 EHLVRIL-REGDNEANAAAADVLWDLAGYKHSVPVIRNSGAIPILVNLLRGENDEVREKV 359
           E L+  L  + D E  AAAA  L +L           +  A+P L+ LL+  + EVR   
Sbjct: 2   EALLEALLSDPDPEVRAAAARALGEL----------GDPEALPALLELLKDPDPEVRRAA 51

Query: 360 SGAIAQLSYNEADRVALADAGAVPIMIELL-HDESEELRDNAAESL 404
           + A+ +          L D  A+P ++ELL  D+   +R  AA +L
Sbjct: 52  AEALGK----------LGDPEALPALLELLQDDDDAVVRAAAASAL 87

This family includes multiple HEAT repeats. Length = 88

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	461
KOG4224	550	consensus Armadillo repeat protein VAC8 required f	100.0
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	100.0
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	100.0
KOG4224	550	consensus Armadillo repeat protein VAC8 required f	100.0
KOG0166	514	consensus Karyopherin (importin) alpha [Intracellu	100.0
KOG0166	514	consensus Karyopherin (importin) alpha [Intracellu	100.0
COG5064	526	SRP1 Karyopherin (importin) alpha [Intracellular t	100.0
COG5064	526	SRP1 Karyopherin (importin) alpha [Intracellular t	100.0
PF05804	708	KAP: Kinesin-associated protein (KAP)	99.97
PF05804	708	KAP: Kinesin-associated protein (KAP)	99.96
KOG1048	717	consensus Neural adherens junction protein Plakoph	99.89
KOG1048	717	consensus Neural adherens junction protein Plakoph	99.87
KOG2122	2195	consensus Beta-catenin-binding protein APC, contai	99.86
KOG4500	604	consensus Rho/Rac GTPase guanine nucleotide exchan	99.84
PF10508	503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	99.84
KOG4199	461	consensus Uncharacterized conserved protein [Funct	99.82
PF10508	503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	99.82
KOG4500	604	consensus Rho/Rac GTPase guanine nucleotide exchan	99.81
KOG2122	2195	consensus Beta-catenin-binding protein APC, contai	99.81
KOG4199	461	consensus Uncharacterized conserved protein [Funct	99.8
KOG1222	791	consensus Kinesin associated protein KAP [Intracel	99.75
KOG1222	791	consensus Kinesin associated protein KAP [Intracel	99.75
PF04826	254	Arm_2: Armadillo-like; InterPro: IPR006911 This en	99.67
PRK09687	280	putative lyase; Provisional	99.66
PF04826	254	Arm_2: Armadillo-like; InterPro: IPR006911 This en	99.65
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	99.63
PF01602	526	Adaptin_N: Adaptin N terminal region; InterPro: IP	99.62
KOG2171	1075	consensus Karyopherin (importin) beta 3 [Nuclear s	99.61
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	99.61
KOG1293	678	consensus Proteins containing armadillo/beta-caten	99.59
cd00256	429	VATPase_H VATPase_H, regulatory vacuolar ATP synth	99.57
KOG2171	1075	consensus Karyopherin (importin) beta 3 [Nuclear s	99.57
PRK09687	280	putative lyase; Provisional	99.56
PF01602	526	Adaptin_N: Adaptin N terminal region; InterPro: IP	99.55
KOG2023	885	consensus Nuclear transport receptor Karyopherin-b	99.53
PTZ00429	746	beta-adaptin; Provisional	99.48
KOG1293	678	consensus Proteins containing armadillo/beta-caten	99.47
cd00256	429	VATPase_H VATPase_H, regulatory vacuolar ATP synth	99.44
PTZ00429	746	beta-adaptin; Provisional	99.42
cd00020	120	ARM Armadillo/beta-catenin-like repeats. An approx	99.39
KOG0168	1051	consensus Putative ubiquitin fusion degradation pr	99.38
cd00020	120	ARM Armadillo/beta-catenin-like repeats. An approx	99.36
KOG2023	885	consensus Nuclear transport receptor Karyopherin-b	99.33
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	99.28
KOG2759	442	consensus Vacuolar H+-ATPase V1 sector, subunit H	99.27
KOG1241	859	consensus Karyopherin (importin) beta 1 [Nuclear s	99.25
KOG0212	675	consensus Uncharacterized conserved protein [Funct	99.24
KOG1241	859	consensus Karyopherin (importin) beta 1 [Nuclear s	99.23
KOG4413	524	consensus 26S proteasome regulatory complex, subun	99.18
PF03224	312	V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004	99.17
PF03224	312	V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004	99.16
KOG2160	342	consensus Armadillo/beta-catenin-like repeat-conta	99.16
KOG0212	675	consensus Uncharacterized conserved protein [Funct	99.16
KOG1062	866	consensus Vesicle coat complex AP-1, gamma subunit	99.15
KOG2160	342	consensus Armadillo/beta-catenin-like repeat-conta	99.14
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	99.09
PF05536	543	Neurochondrin: Neurochondrin	99.09
KOG2973	353	consensus Uncharacterized conserved protein [Funct	99.08
KOG0168	1051	consensus Putative ubiquitin fusion degradation pr	99.07
KOG4413	524	consensus 26S proteasome regulatory complex, subun	99.07
KOG3678	832	consensus SARM protein (with sterile alpha and arm	99.06
KOG2759	442	consensus Vacuolar H+-ATPase V1 sector, subunit H	99.04
KOG1242	569	consensus Protein containing adaptin N-terminal re	99.03
COG5215	858	KAP95 Karyopherin (importin) beta [Intracellular t	99.0
KOG2973	353	consensus Uncharacterized conserved protein [Funct	98.96
KOG0213	1172	consensus Splicing factor 3b, subunit 1 [RNA proce	98.95
COG5215	858	KAP95 Karyopherin (importin) beta [Intracellular t	98.93
KOG3678	832	consensus SARM protein (with sterile alpha and arm	98.93
KOG1062	866	consensus Vesicle coat complex AP-1, gamma subunit	98.92
KOG1242	569	consensus Protein containing adaptin N-terminal re	98.9
KOG0213	1172	consensus Splicing factor 3b, subunit 1 [RNA proce	98.87
KOG1059	877	consensus Vesicle coat complex AP-3, delta subunit	98.84
KOG1061	734	consensus Vesicle coat complex AP-1/AP-2/AP-4, bet	98.84
PF05536	543	Neurochondrin: Neurochondrin	98.8
PF14664	371	RICTOR_N: Rapamycin-insensitive companion of mTOR,	98.78
TIGR02270	410	conserved hypothetical protein. Members are found	98.78
KOG1824	1233	consensus TATA-binding protein-interacting protein	98.78
KOG1077	938	consensus Vesicle coat complex AP-2, alpha subunit	98.76
KOG1059	877	consensus Vesicle coat complex AP-3, delta subunit	98.76
KOG0211	759	consensus Protein phosphatase 2A regulatory subuni	98.72
KOG1789	2235	consensus Endocytosis protein RME-8, contains DnaJ	98.71
KOG1060	968	consensus Vesicle coat complex AP-3, beta subunit	98.71
COG5181	975	HSH155 U2 snRNP spliceosome subunit [RNA processin	98.68
KOG1061	734	consensus Vesicle coat complex AP-1/AP-2/AP-4, bet	98.65
TIGR02270	410	conserved hypothetical protein. Members are found	98.62
KOG1824	1233	consensus TATA-binding protein-interacting protein	98.62
COG5369	743	Uncharacterized conserved protein [Function unknow	98.56
COG5369	743	Uncharacterized conserved protein [Function unknow	98.56
KOG4646	173	consensus Uncharacterized conserved protein, conta	98.56
KOG1077	938	consensus Vesicle coat complex AP-2, alpha subunit	98.53
KOG4646	173	consensus Uncharacterized conserved protein, conta	98.47
KOG1789	2235	consensus Endocytosis protein RME-8, contains DnaJ	98.46
COG5181	975	HSH155 U2 snRNP spliceosome subunit [RNA processin	98.44
KOG0211	759	consensus Protein phosphatase 2A regulatory subuni	98.38
KOG0915	1702	consensus Uncharacterized conserved protein [Funct	98.38
KOG2259	823	consensus Uncharacterized conserved protein [Funct	98.34
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	98.33
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	98.3
COG5240	898	SEC21 Vesicle coat complex COPI, gamma subunit [In	98.29
KOG2259	823	consensus Uncharacterized conserved protein [Funct	98.29
COG1413	335	FOG: HEAT repeat [Energy production and conversion	98.29
COG1413	335	FOG: HEAT repeat [Energy production and conversion	98.27
PF14664	371	RICTOR_N: Rapamycin-insensitive companion of mTOR,	98.27
PF12348	228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	98.24
PF00514	41	Arm: Armadillo/beta-catenin-like repeat; InterPro:	98.23
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	98.2
COG5096	757	Vesicle coat complex, various subunits [Intracellu	98.16
PRK14707	2710	hypothetical protein; Provisional	98.12
PRK14707	2710	hypothetical protein; Provisional	98.11
PF10165	446	Ric8: Guanine nucleotide exchange factor synembryn	98.1
KOG2734	536	consensus Uncharacterized conserved protein [Funct	98.09
KOG1943	1133	consensus Beta-tubulin folding cofactor D [Posttra	98.09
KOG1060	968	consensus Vesicle coat complex AP-3, beta subunit	98.09
PF10165	446	Ric8: Guanine nucleotide exchange factor synembryn	98.04
PF08569	335	Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro	98.02
PF00514	41	Arm: Armadillo/beta-catenin-like repeat; InterPro:	98.01
COG5231	432	VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Ene	98.0
KOG2734	536	consensus Uncharacterized conserved protein [Funct	97.96
PF12460	415	MMS19_C: RNAPII transcription regulator C-terminal	97.91
KOG0915	1702	consensus Uncharacterized conserved protein [Funct	97.89
KOG1058	948	consensus Vesicle coat complex COPI, beta subunit	97.88
PF12348	228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	97.85
PF13646	88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	97.8
KOG1058	948	consensus Vesicle coat complex COPI, beta subunit	97.8
PF13646	88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	97.79
COG5240	898	SEC21 Vesicle coat complex COPI, gamma subunit [In	97.76
KOG3036	293	consensus Protein involved in cell differentiation	97.63
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	97.62
COG5096	757	Vesicle coat complex, various subunits [Intracellu	97.6
KOG3036	293	consensus Protein involved in cell differentiation	97.59
KOG1248	1176	consensus Uncharacterized conserved protein [Funct	97.59
smart00185	41	ARM Armadillo/beta-catenin-like repeats. Approx. 4	97.56
PF09759	102	Atx10homo_assoc: Spinocerebellar ataxia type 10 pr	97.55
PF13513	55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	97.51
PF04078	262	Rcd1: Cell differentiation family, Rcd1-like ; Int	97.44
KOG1078	865	consensus Vesicle coat complex COPI, gamma subunit	97.42
PF11841	160	DUF3361: Domain of unknown function (DUF3361)	97.4
smart00185	41	ARM Armadillo/beta-catenin-like repeats. Approx. 4	97.4
KOG0567	289	consensus HEAT repeat-containing protein [General	97.4
PF09759	102	Atx10homo_assoc: Spinocerebellar ataxia type 10 pr	97.37
PF08569	335	Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro	97.36
PF13513	55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	97.33
COG5231	432	VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Ene	97.33
PF11841	160	DUF3361: Domain of unknown function (DUF3361)	97.28
PF12717	178	Cnd1: non-SMC mitotic condensation complex subunit	97.2
KOG2032	533	consensus Uncharacterized conserved protein [Funct	97.13
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	97.13
KOG2062	929	consensus 26S proteasome regulatory complex, subun	97.12
KOG4151	748	consensus Myosin assembly protein/sexual cycle pro	97.11
KOG2032	533	consensus Uncharacterized conserved protein [Funct	97.05
PF12717	178	Cnd1: non-SMC mitotic condensation complex subunit	97.04
PF04078	262	Rcd1: Cell differentiation family, Rcd1-like ; Int	97.01
PF12460	415	MMS19_C: RNAPII transcription regulator C-terminal	96.96
PF12755	97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	96.91
PF05918	556	API5: Apoptosis inhibitory protein 5 (API5); Inter	96.9
PF05004	309	IFRD: Interferon-related developmental regulator (	96.83
PF07814	361	WAPL: Wings apart-like protein regulation of heter	96.77
PF05004	309	IFRD: Interferon-related developmental regulator (	96.72
PF13764	802	E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4	96.71
PF05918	556	API5: Apoptosis inhibitory protein 5 (API5); Inter	96.71
PF12755	97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	96.7
PF11701	157	UNC45-central: Myosin-binding striated muscle asse	96.7
KOG4151	748	consensus Myosin assembly protein/sexual cycle pro	96.68
PF13764	802	E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4	96.65
KOG1248	1176	consensus Uncharacterized conserved protein [Funct	96.64
PF11698	119	V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011	96.64
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	96.62
KOG0567	289	consensus HEAT repeat-containing protein [General	96.6
KOG4535	728	consensus HEAT and armadillo repeat-containing pro	96.55
PF12719	298	Cnd3: Nuclear condensing complex subunits, C-term	96.45
PF04063	192	DUF383: Domain of unknown function (DUF383); Inter	96.45
PF11701	157	UNC45-central: Myosin-binding striated muscle asse	96.45
PF04063	192	DUF383: Domain of unknown function (DUF383); Inter	96.4
PF08045	257	CDC14: Cell division control protein 14, SIN compo	96.36
KOG1078	865	consensus Vesicle coat complex COPI, gamma subunit	96.34
PF07814	361	WAPL: Wings apart-like protein regulation of heter	96.33
KOG1566	342	consensus Conserved protein Mo25 [Function unknown	96.32
KOG1967	1030	consensus DNA repair/transcription protein Mms19 [	96.28
KOG2274	1005	consensus Predicted importin 9 [Intracellular traf	96.26
PF11698	119	V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011	96.25
KOG2999	713	consensus Regulator of Rac1, required for phagocyt	96.24
KOG4535	728	consensus HEAT and armadillo repeat-containing pro	96.16
PF08045	257	CDC14: Cell division control protein 14, SIN compo	96.12
PF14668	73	RICTOR_V: Rapamycin-insensitive companion of mTOR,	96.09
PF12719	298	Cnd3: Nuclear condensing complex subunits, C-term	96.04
KOG2062	929	consensus 26S proteasome regulatory complex, subun	96.01
KOG2025	892	consensus Chromosome condensation complex Condensi	95.92
KOG2274	1005	consensus Predicted importin 9 [Intracellular traf	95.92
KOG2611	698	consensus Neurochondrin/leucine-rich protein (Neur	95.9
KOG4653	982	consensus Uncharacterized conserved protein [Funct	95.88
KOG4653	982	consensus Uncharacterized conserved protein [Funct	95.81
KOG1967	1030	consensus DNA repair/transcription protein Mms19 [	95.79
KOG1943	1133	consensus Beta-tubulin folding cofactor D [Posttra	95.68
KOG0414	1251	consensus Chromosome condensation complex Condensi	95.67
KOG2956	516	consensus CLIP-associating protein [General functi	95.59
PF02985	31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	95.55
PF06025	379	DUF913: Domain of Unknown Function (DUF913); Inter	95.48
PF02985	31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	95.37
KOG1566	342	consensus Conserved protein Mo25 [Function unknown	95.32
KOG2956	516	consensus CLIP-associating protein [General functi	95.28
COG5209	315	RCD1 Uncharacterized protein involved in cell diff	95.14
PF14668	73	RICTOR_V: Rapamycin-insensitive companion of mTOR,	94.84
KOG2611	698	consensus Neurochondrin/leucine-rich protein (Neur	94.73
KOG1020	1692	consensus Sister chromatid cohesion protein SCC2/N	94.62
KOG1243	690	consensus Protein kinase [General function predict	94.6
COG5209	315	RCD1 Uncharacterized protein involved in cell diff	94.52
KOG2999	713	consensus Regulator of Rac1, required for phagocyt	94.47
KOG2137	700	consensus Protein kinase [Signal transduction mech	94.44
KOG0414	1251	consensus Chromosome condensation complex Condensi	94.44
KOG1991	1010	consensus Nuclear transport receptor RANBP7/RANBP8	94.4
COG5116	926	RPN2 26S proteasome regulatory complex component [	94.33
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	94.32
PF06025	379	DUF913: Domain of Unknown Function (DUF913); Inter	94.16
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	94.11
KOG1243	690	consensus Protein kinase [General function predict	94.1
KOG1991	1010	consensus Nuclear transport receptor RANBP7/RANBP8	93.96
KOG2025	892	consensus Chromosome condensation complex Condensi	93.91
COG5098	1128	Chromosome condensation complex Condensin, subunit	93.84
KOG4464	532	consensus Signaling protein RIC-8/synembryn (regul	93.74
PF11707	330	Npa1: Ribosome 60S biogenesis N-terminal; InterPro	93.68
PF06371	187	Drf_GBD: Diaphanous GTPase-binding Domain; InterPr	93.64
KOG4464	532	consensus Signaling protein RIC-8/synembryn (regul	93.6
PF06371	187	Drf_GBD: Diaphanous GTPase-binding Domain; InterPr	93.37
KOG1820	815	consensus Microtubule-associated protein [Cytoskel	93.07
KOG1820	815	consensus Microtubule-associated protein [Cytoskel	93.02
KOG1525	1266	consensus Sister chromatid cohesion complex Cohesi	92.81
COG5098	1128	Chromosome condensation complex Condensin, subunit	92.27
smart00638	574	LPD_N Lipoprotein N-terminal Domain.	92.1
PF14500	262	MMS19_N: Dos2-interacting transcription regulator	91.81
PF12031	257	DUF3518: Domain of unknown function (DUF3518); Int	91.76
KOG1992	960	consensus Nuclear export receptor CSE1/CAS (import	91.64
KOG2137	700	consensus Protein kinase [Signal transduction mech	91.64
COG5218	885	YCG1 Chromosome condensation complex Condensin, su	91.48
PF11864	464	DUF3384: Domain of unknown function (DUF3384); Int	91.23
COG5116	926	RPN2 26S proteasome regulatory complex component [	91.2
PF08324	268	PUL: PUL domain; InterPro: IPR013535 The PUL (afte	91.08
KOG1020	1692	consensus Sister chromatid cohesion protein SCC2/N	90.99
PF14726	98	RTTN_N: Rotatin, an armadillo repeat protein, cent	90.85
PF12031	257	DUF3518: Domain of unknown function (DUF3518); Int	90.61
COG5218	885	YCG1 Chromosome condensation complex Condensin, su	90.59
KOG1949	1005	consensus Uncharacterized conserved protein [Funct	90.43
PF01347	618	Vitellogenin_N: Lipoprotein amino terminal region;	90.21
PRK09169	2316	hypothetical protein; Validated	90.04
KOG1788	2799	consensus Uncharacterized conserved protein [Funct	89.9
PF01347	618	Vitellogenin_N: Lipoprotein amino terminal region;	89.86
PF08324	268	PUL: PUL domain; InterPro: IPR013535 The PUL (afte	89.86
PF10363	92	DUF2435: Protein of unknown function (DUF2435)	89.83
PF12530	234	DUF3730: Protein of unknown function (DUF3730) ; I	89.8
PF10363	92	DUF2435: Protein of unknown function (DUF2435)	89.73
PF14500	262	MMS19_N: Dos2-interacting transcription regulator	89.27
COG5656	970	SXM1 Importin, protein involved in nuclear import	89.19
KOG0301	745	consensus Phospholipase A2-activating protein (con	89.1
PRK09169	2316	hypothetical protein; Validated	88.43
PF11865	160	DUF3385: Domain of unknown function (DUF3385); Int	88.11
PF14225	262	MOR2-PAG1_C: Cell morphogenesis C-terminal	88.1
cd03568	144	VHS_STAM VHS domain family, STAM subfamily; member	87.77
PF12830	187	Nipped-B_C: Sister chromatid cohesion C-terminus	86.57
PF11865	160	DUF3385: Domain of unknown function (DUF3385); Int	86.26
KOG2933	334	consensus Uncharacterized conserved protein [Funct	85.78
KOG2933	334	consensus Uncharacterized conserved protein [Funct	85.01
cd03568	144	VHS_STAM VHS domain family, STAM subfamily; member	84.98
cd03569	142	VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p s	84.93
cd03561	133	VHS VHS domain family; The VHS domain is present i	84.34
PF08506	370	Cse1: Cse1; InterPro: IPR013713 The exchange of ma	83.83
PF08167	165	RIX1: rRNA processing/ribosome biogenesis	83.73
PF12530	234	DUF3730: Protein of unknown function (DUF3730) ; I	83.64
PF13251	182	DUF4042: Domain of unknown function (DUF4042)	83.63
PF08167	165	RIX1: rRNA processing/ribosome biogenesis	83.34
cd03567	139	VHS_GGA VHS domain family, GGA subfamily; GGA (Gol	83.12
COG5656	970	SXM1 Importin, protein involved in nuclear import	82.98
PF11707	330	Npa1: Ribosome 60S biogenesis N-terminal; InterPro	82.49
KOG1992	960	consensus Nuclear export receptor CSE1/CAS (import	81.08
KOG1848	1610	consensus Uncharacterized conserved protein [Funct	80.59
cd03567	139	VHS_GGA VHS domain family, GGA subfamily; GGA (Gol	80.29
KOG0301	745	consensus Phospholipase A2-activating protein (con	80.11
cd03561	133	VHS VHS domain family; The VHS domain is present i	80.02

>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.1e-42  Score=296.22  Aligned_cols=425  Identities=34%  Similarity=0.431  Sum_probs=383.9

Q ss_pred             HHHHHHHHHHhhcCCCchhHHHhhHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHhc
Q 044999           26 LQVKALTKLARVSKFAPQDILAATIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQADGALATEIGQSGVINSVLRL  105 (461)
Q Consensus        26 ~~~~a~~~l~~la~~~~~~~l~~~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~l  105 (461)
                      .+..|+.++..+.....++.-++.+.+++-++++      .|+.+|..+..++.+++.  +.+++-.+++-++++.|+.-
T Consensus        63 lqrsaalafAeitek~vr~Vsres~epvl~llqs------~d~~Iq~aa~~alGnlAV--n~enk~liv~l~Gl~~Li~q  134 (550)
T KOG4224|consen   63 LQRSAALAFAEITEKGVRRVSRESNEPVLALLQS------CDKCIQCAAGEALGNLAV--NMENKGLIVSLLGLDLLILQ  134 (550)
T ss_pred             cchHHHHHHHHHHHHHHHHhhhhhhhHHHHHHhC------cchhhhhhhhhhhcccee--ccCCceEEEeccChHHHHHH
Confidence            3344444444444222333323377888888886      567899999999999999  78888888999999999988


Q ss_pred             CCCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHhhCChHHHHHHHhcCCHHHH
Q 044999          106 FPQSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLNSCNDGTRRYLLEILSALALLREVRRVLICLGGLRYL  185 (461)
Q Consensus       106 l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l  185 (461)
                      +..+...+|..+..|+.+++.. .+++..+...|++..+.++-++.+..+|+++..+|.+++...++|+.++..|++|.|
T Consensus       135 mmtd~vevqcnaVgCitnLaT~-d~nk~kiA~sGaL~pltrLakskdirvqrnatgaLlnmThs~EnRr~LV~aG~lpvL  213 (550)
T KOG4224|consen  135 MMTDGVEVQCNAVGCITNLATF-DSNKVKIARSGALEPLTRLAKSKDIRVQRNATGALLNMTHSRENRRVLVHAGGLPVL  213 (550)
T ss_pred             hcCCCcEEEeeehhhhhhhhcc-ccchhhhhhccchhhhHhhcccchhhHHHHHHHHHHHhhhhhhhhhhhhccCCchhh
Confidence            8888888899999999999977 589999999999999999989999999999999999999999999999999999999


Q ss_pred             HHHHcCCCHHHHHHHHHHHHHhhcCchhHHHHHhcC--ChHHHHHhcccCCHHHHHHHHHHHHHHhcCccchhhhhhcCC
Q 044999          186 VEAVSFGSMVSRERACQAIGLLAVTGRARRLLVELG--VIPGLVELFHIGDWTTKLVAGNTLGVVAAHVEYITPVAEAGA  263 (461)
Q Consensus       186 ~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~--~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~  263 (461)
                      +.++++++.++|++++.++++++.....++.+.+.+  .++.|++++.++++.++..|..+|++++.+.+++..+++.|.
T Consensus       214 Vsll~s~d~dvqyycttaisnIaVd~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq~eiv~ag~  293 (550)
T KOG4224|consen  214 VSLLKSGDLDVQYYCTTAISNIAVDRRARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQREIVEAGS  293 (550)
T ss_pred             hhhhccCChhHHHHHHHHhhhhhhhHHHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccchhhhHHHhcCC
Confidence            999999999999999999999999999999999877  999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhCCCChhHHHHHHHHHHHhccCcccHHHHH-----HHHHHHhccCC-HHHHHHHHHHHHHhhC-CCCchhHHh
Q 044999          264 IPLYAELLQGPDSTGKEISEDVFCILAVSEANANAIA-----EHLVRILREGD-NEANAAAADVLWDLAG-YKHSVPVIR  336 (461)
Q Consensus       264 i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~i~-----~~l~~ll~~~~-~~~~~~a~~~L~~l~~-~~~~~~~l~  336 (461)
                      +|.++++++++..........++.|++.++-+...++     .+|+++|+.++ ++++.+|...|++|+. +..++..+.
T Consensus       294 lP~lv~Llqs~~~plilasVaCIrnisihplNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~  373 (550)
T KOG4224|consen  294 LPLLVELLQSPMGPLILASVACIRNISIHPLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIR  373 (550)
T ss_pred             chHHHHHHhCcchhHHHHHHHHHhhcccccCcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHh
Confidence            9999999998877777778889999999998877776     78999998775 6699999999999995 788999999


Q ss_pred             hcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhccCCCHHHHHHHHHHHHHhcCCCcchHH
Q 044999          337 NSGAIPILVNLLRGENDEVREKVSGAIAQLSYNEADRVALADAGAVPIMIELLHDESEELRDNAAESLINFSEDPLQHER  416 (461)
Q Consensus       337 ~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~  416 (461)
                      +.|.+|.+++++.+++..+|.....++..|+.++..+..+.+.|++|.|+.+..+.+.+++.+++.+|.|++.+-++-..
T Consensus       374 esgAi~kl~eL~lD~pvsvqseisac~a~Lal~d~~k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss~v~~Yar  453 (550)
T KOG4224|consen  374 ESGAIPKLIELLLDGPVSVQSEISACIAQLALNDNDKEALLDSGIIPILIPWTGSESEEVRGNAAAALINLSSDVEHYAR  453 (550)
T ss_pred             hcCchHHHHHHHhcCChhHHHHHHHHHHHHHhccccHHHHhhcCCcceeecccCccchhhcccHHHHHHhhhhhhHHHHH
Confidence            99999999999999999999999999999999889999999999999999999999999999999999999999999889


Q ss_pred             HHHhhCCchHHhHHHHHHHhhhchhHHHHHHHHHhHhhhccCCC
Q 044999          417 ISEAIGIPSFQSMQSRLTRIRASDDLMARSMRRMSIEQLTWDPD  460 (461)
Q Consensus       417 l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~  460 (461)
                      +.|+-+.|. +-+...+.++..+++.+++..++-+|.|+.-++|
T Consensus       454 viEawd~P~-~gi~g~L~Rfl~S~~~tf~hia~wTI~qLle~h~  496 (550)
T KOG4224|consen  454 VIEAWDHPV-QGIQGRLARFLASHELTFRHIARWTIQQLLEDHD  496 (550)
T ss_pred             HHHHhcCcc-hhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhCC
Confidence            999988888 8899999999999999999999999999876665

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=100.00  E-value=2e-38  Score=331.98  Aligned_cols=435  Identities=21%  Similarity=0.238  Sum_probs=365.3

Q ss_pred             HhHHHHHHHhhcCCHHHHHHHHHHHHhhc-C-CCchhHHHh--hHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHhcC
Q 044999           10 EAFNRFEQAVVSGSEALQVKALTKLARVS-K-FAPQDILAA--TIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQA   85 (461)
Q Consensus        10 ~~~~~l~~ll~~~~~~~~~~a~~~l~~la-~-~~~~~~l~~--~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~   85 (461)
                      ..++.++.+++++++.++..|+.++.+++ + +..+..+.+  +||.|+++|++    + +++.+|.+|+++|.+|+.+ 
T Consensus       189 GaVp~LV~LLsS~d~~lQ~eAa~aLa~Lass~ee~~~aVIeaGaVP~LV~LL~s----g-~~~~VRE~AA~AL~nLAs~-  262 (2102)
T PLN03200        189 GGVDILVKLLSSGNSDAQANAASLLARLMMAFESSISKVLDAGAVKQLLKLLGQ----G-NEVSVRAEAAGALEALSSQ-  262 (2102)
T ss_pred             CCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHcc----C-CChHHHHHHHHHHHHHhcC-
Confidence            37899999999999999999999999888 4 557776666  99999999985    4 3467888899999999996 


Q ss_pred             CchhHHHHHhcCCHHHHHhcCCCCCH---------HHHHHHHHHHHHHhccChh--------------------------
Q 044999           86 DGALATEIGQSGVINSVLRLFPQSDD---------SFRTVLVKCLRVFVTFGNE--------------------------  130 (461)
Q Consensus        86 ~~~~~~~~~~~~~l~~L~~ll~~~~~---------~~~~~~~~~l~~l~~~~~~--------------------------  130 (461)
                      +.+.+..+.+.|+++.|++++.+++.         ..++.+++++.|++.+...                          
T Consensus       263 s~e~r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg~~~ll~~L~~ll~s~rd~~~~ada~gALa  342 (2102)
T PLN03200        263 SKEAKQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGGMSALILYLGELSESPRSPAPIADTLGALA  342 (2102)
T ss_pred             CHHHHHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCCchhhHHHHHHhhcccchHHHHHHHHhhHH
Confidence            78899999999999999999976543         3478888888887753111                          


Q ss_pred             -----------------------------------------------------hHHHHHHcCCHHHHHHHhcCCChHHHH
Q 044999          131 -----------------------------------------------------NRVIVARNGGLEIVIDLLNSCNDGTRR  157 (461)
Q Consensus       131 -----------------------------------------------------~~~~~~~~g~i~~L~~ll~~~~~~~~~  157 (461)
                                                                           .+..+...|+++.|+.++...+.+++.
T Consensus       343 yll~l~d~~~~~~~~i~~~~v~~~LV~Llr~k~p~~vqe~V~eALasl~gN~~l~~~L~~~daik~LV~LL~~~~~evQ~  422 (2102)
T PLN03200        343 YALMVFDSSAESTRAFDPTVIEQILVKLLKPRDTKLVQERIIEALASLYGNAYLSRKLNHAEAKKVLVGLITMATADVQE  422 (2102)
T ss_pred             HHHHhcCCchhhhhhccccccHHHHHHHhCCCCCchhHHHHHHHHHHhcCChHHHHHHHhccchhhhhhhhccCCHHHHH
Confidence                                                                 011122334555566666666678899


Q ss_pred             HHHHHHHHhh-CChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCchh-HHHHHhcCChHHHHHhcccCCH
Q 044999          158 YLLEILSALA-LLREVRRVLICLGGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRA-RRLLVELGVIPGLVELFHIGDW  235 (461)
Q Consensus       158 ~a~~~L~~l~-~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~-~~~~~~~~~i~~L~~ll~~~~~  235 (461)
                      .+++.|.+++ .+.+.++.+.+.|+++.|+++|.+++...+..+++++++++...+. +..+.+.|++|.|+++|.+++.
T Consensus       423 ~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~~~  502 (2102)
T PLN03200        423 ELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETGSQ  502 (2102)
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCH
Confidence            9999999999 6678889999999999999999999999999999999999987765 8899999999999999999999


Q ss_pred             HHHHHHHHHHHHHhcCccc-hhhhhhcCCHHHHHHHhCCCChhHHHHHHHHHHHhccCcccH------------------
Q 044999          236 TTKLVAGNTLGVVAAHVEY-ITPVAEAGAIPLYAELLQGPDSTGKEISEDVFCILAVSEANA------------------  296 (461)
Q Consensus       236 ~~~~~a~~~L~~l~~~~~~-~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~------------------  296 (461)
                      .+++.|+++|.|++.++++ +..+.+.|+++.|+++|++++++.++.++++|.|+....+..                  
T Consensus       503 ~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~~I~~Lv~LLlsdd~~~~~  582 (2102)
T PLN03200        503 KAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAATISQLTALLLGDLPESKV  582 (2102)
T ss_pred             HHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchhHHHHHHHHhcCCChhHHH
Confidence            9999999999999998544 444557899999999999999999999999999995322211                  


Q ss_pred             -------------------HHH------HHHHHHHhccCCHHHHHHHHHHHHHhhCC-CCchhHHhhcCCHHHHHHhhcC
Q 044999          297 -------------------NAI------AEHLVRILREGDNEANAAAADVLWDLAGY-KHSVPVIRNSGAIPILVNLLRG  350 (461)
Q Consensus       297 -------------------~~i------~~~l~~ll~~~~~~~~~~a~~~L~~l~~~-~~~~~~l~~~g~i~~L~~ll~~  350 (461)
                                         ...      .+.|+++++++++++++.|+++|.+++.+ ++....++..|+++.++.++++
T Consensus       583 ~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss  662 (2102)
T PLN03200        583 HVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTN  662 (2102)
T ss_pred             HHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhc
Confidence                               000      07899999999999999999999999954 6778889999999999999999


Q ss_pred             CCHHHHHHHHHHHHHhcC--ChhhHHHHHhCCChHHHHHhccCCCHHHHHHHHHHHHHhcCCCcchHHHHHhhCCchHHh
Q 044999          351 ENDEVREKVSGAIAQLSY--NEADRVALADAGAVPIMIELLHDESEELRDNAAESLINFSEDPLQHERISEAIGIPSFQS  428 (461)
Q Consensus       351 ~~~~v~~~a~~~L~~l~~--~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~~~~~~~~~  428 (461)
                      ++.++++.++++|.+++.  +.+++..+++.|++++|++++++++.+++..++.+|.|++.+++++..+.+.++++.+.+
T Consensus       663 ~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~e~~~ei~~~~~I~~Lv~  742 (2102)
T PLN03200        663 NTEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLSDPEVAAEALAEDIILPLTR  742 (2102)
T ss_pred             CChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHcCchHHHHHHhcCcHHHHHH
Confidence            999999999999999997  556677889999999999999999999999999999999999999988888888777776


Q ss_pred             HHHHHHHhhhchhHHHHHHHHHhHhhhcc
Q 044999          429 MQSRLTRIRASDDLMARSMRRMSIEQLTW  457 (461)
Q Consensus       429 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~  457 (461)
                      ++.      ++ +...|+.|-.++.++..
T Consensus       743 lLr------~G-~~~~k~~Aa~AL~~L~~  764 (2102)
T PLN03200        743 VLR------EG-TLEGKRNAARALAQLLK  764 (2102)
T ss_pred             HHH------hC-ChHHHHHHHHHHHHHHh
Confidence            665      43 56677777777776654

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=100.00  E-value=5.4e-38  Score=328.82  Aligned_cols=438  Identities=18%  Similarity=0.203  Sum_probs=361.8

Q ss_pred             HHhHHHHHHHhhcC---CHHHHHHHHHHHHhhc-CCCch-hHHHh--hHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHH
Q 044999            9 EEAFNRFEQAVVSG---SEALQVKALTKLARVS-KFAPQ-DILAA--TIPILARLLGENNFSGNLTRSIQQAAAYCLKQI   81 (461)
Q Consensus         9 ~~~~~~l~~ll~~~---~~~~~~~a~~~l~~la-~~~~~-~~l~~--~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l   81 (461)
                      ++.+|.|+.++.++   |..++..|+.+|.+|+ +.+++ ..+.+  ++|.++++|++      +++..|..|+.+|.++
T Consensus       143 ~GaVp~Lv~lL~~gsk~d~~L~~~Av~AL~nLs~~~en~~~~IIeaGaVp~LV~LLsS------~d~~lQ~eAa~aLa~L  216 (2102)
T PLN03200        143 EGVVPSLWDQLQPGNKQDKVVEGLLTGALRNLCGSTDGFWSATLEAGGVDILVKLLSS------GNSDAQANAASLLARL  216 (2102)
T ss_pred             cCChHHHHHHHhCCchhhHHHHHHHHHHHHHHhcCccchHHHHHHcCCHHHHHHHHcC------CCHHHHHHHHHHHHHH
Confidence            67789999999987   4457788899999999 55554 44444  99999999986      5678999999999999


Q ss_pred             HhcCCchhHHHHHhcCCHHHHHhcCCCC-CHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhcCCC--------
Q 044999           82 ASQADGALATEIGQSGVINSVLRLFPQS-DDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLNSCN--------  152 (461)
Q Consensus        82 ~~~~~~~~~~~~~~~~~l~~L~~ll~~~-~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~--------  152 (461)
                      +.. .++.+..+.+.|+++.|+++|+++ ++.++..|++++.+++.++++++..+.+.|+++.|++++..++        
T Consensus       217 ass-~ee~~~aVIeaGaVP~LV~LL~sg~~~~VRE~AA~AL~nLAs~s~e~r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~  295 (2102)
T PLN03200        217 MMA-FESSISKVLDAGAVKQLLKLLGQGNEVSVRAEAAGALEALSSQSKEAKQAIADAGGIPALINATVAPSKEFMQGEF  295 (2102)
T ss_pred             HcC-ChHHHHHHHHCCCHHHHHHHHccCCChHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhCcchhhhcccc
Confidence            975 566888899999999999999864 5688999999999999999999999999999999999997544        


Q ss_pred             -hHHHHHHHHHHHHhhCChHH-----------------------------------------------------------
Q 044999          153 -DGTRRYLLEILSALALLREV-----------------------------------------------------------  172 (461)
Q Consensus       153 -~~~~~~a~~~L~~l~~~~~~-----------------------------------------------------------  172 (461)
                       ..+++.|.++|.|+|.+...                                                           
T Consensus       296 ~~~Lqe~AvwALsNIcgg~~~ll~~L~~ll~s~rd~~~~ada~gALayll~l~d~~~~~~~~i~~~~v~~~LV~Llr~k~  375 (2102)
T PLN03200        296 AQALQENAMGALANICGGMSALILYLGELSESPRSPAPIADTLGALAYALMVFDSSAESTRAFDPTVIEQILVKLLKPRD  375 (2102)
T ss_pred             chHHHHHHHHHHHHHhCCchhhHHHHHHhhcccchHHHHHHHHhhHHHHHHhcCCchhhhhhccccccHHHHHHHhCCCC
Confidence             24588999999998853100                                                           


Q ss_pred             ---------------------HHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCchh-HHHHHhcCChHHHHHhc
Q 044999          173 ---------------------RRVLICLGGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRA-RRLLVELGVIPGLVELF  230 (461)
Q Consensus       173 ---------------------~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~-~~~~~~~~~i~~L~~ll  230 (461)
                                           +..+.+.++++.|+.++...+.+++..++++|++++.++.. ++.+.+.|+++.|+++|
T Consensus       376 p~~vqe~V~eALasl~gN~~l~~~L~~~daik~LV~LL~~~~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL  455 (2102)
T PLN03200        376 TKLVQERIIEALASLYGNAYLSRKLNHAEAKKVLVGLITMATADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLL  455 (2102)
T ss_pred             CchhHHHHHHHHHHhcCChHHHHHHHhccchhhhhhhhccCCHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHH
Confidence                                 00111223445555566666678899999999999988666 89999999999999999


Q ss_pred             ccCCHHHHHHHHHHHHHHhcC-ccchhhhhhcCCHHHHHHHhCCCChhHHHHHHHHHHHhccCcccHHHHH------HHH
Q 044999          231 HIGDWTTKLVAGNTLGVVAAH-VEYITPVAEAGAIPLYAELLQGPDSTGKEISEDVFCILAVSEANANAIA------EHL  303 (461)
Q Consensus       231 ~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~i~------~~l  303 (461)
                      .+++...++.++++|++++.. ++++..+++.|++|.|+++|.+++..+++.|+++|.|++.++++...++      +.|
T Consensus       456 ~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppL  535 (2102)
T PLN03200        456 GLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPAL  535 (2102)
T ss_pred             cCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHH
Confidence            999999999999999999986 6788899999999999999999999999999999999998776554443      899


Q ss_pred             HHHhccCCHHHHHHHHHHHHHhhCCCCch--------------------------------------hHHhhcCCHHHHH
Q 044999          304 VRILREGDNEANAAAADVLWDLAGYKHSV--------------------------------------PVIRNSGAIPILV  345 (461)
Q Consensus       304 ~~ll~~~~~~~~~~a~~~L~~l~~~~~~~--------------------------------------~~l~~~g~i~~L~  345 (461)
                      +++|++++++.+..|+++|.+++.+.+..                                      ......|+++.|+
T Consensus       536 V~LL~sgd~~~q~~Aa~AL~nLi~~~d~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv  615 (2102)
T PLN03200        536 LWLLKNGGPKGQEIAAKTLTKLVRTADAATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLI  615 (2102)
T ss_pred             HHHHhCCCHHHHHHHHHHHHHHHhccchhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHH
Confidence            99999999999999999999996322110                                      1112468999999


Q ss_pred             HhhcCCCHHHHHHHHHHHHHhcC-ChhhHHHHHhCCChHHHHHhccCCCHHHHHHHHHHHHHhcCCC--cchHHHHHhhC
Q 044999          346 NLLRGENDEVREKVSGAIAQLSY-NEADRVALADAGAVPIMIELLHDESEELRDNAAESLINFSEDP--LQHERISEAIG  422 (461)
Q Consensus       346 ~ll~~~~~~v~~~a~~~L~~l~~-~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~--~~~~~l~~~~~  422 (461)
                      +++.++++.+++.|+++|.+++. +++....++..|++++|+.++++++.+++..++++|.+++...  +++..+.+.|.
T Consensus       616 ~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~Ga  695 (2102)
T PLN03200        616 QLLSSSKEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIKENRKVSYAAEDA  695 (2102)
T ss_pred             HHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCC
Confidence            99999999999999999999999 8888899999999999999999999999999999999998543  34456677777


Q ss_pred             CchHHhHHHHHHHhhhchhHHHHHHHHHhHhhhccCCC
Q 044999          423 IPSFQSMQSRLTRIRASDDLMARSMRRMSIEQLTWDPD  460 (461)
Q Consensus       423 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~  460 (461)
                      ++.+.++++      ++ +..++..+-.++.++.-+||
T Consensus       696 V~pL~~LL~------~~-d~~v~e~Al~ALanLl~~~e  726 (2102)
T PLN03200        696 IKPLIKLAK------SS-SIEVAEQAVCALANLLSDPE  726 (2102)
T ss_pred             HHHHHHHHh------CC-ChHHHHHHHHHHHHHHcCch
Confidence            777666554      33 55677888888888887775

>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=5.2e-37  Score=263.18  Aligned_cols=411  Identities=21%  Similarity=0.245  Sum_probs=364.0

Q ss_pred             HhHHHHHHHhhcCCHHHHHHHHHHHHhhc-CCCchhHHHh--hHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHhcCC
Q 044999           10 EAFNRFEQAVVSGSEALQVKALTKLARVS-KFAPQDILAA--TIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQAD   86 (461)
Q Consensus        10 ~~~~~l~~ll~~~~~~~~~~a~~~l~~la-~~~~~~~l~~--~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~   86 (461)
                      +..+++.-++.+.++.++..|..++++++ +.+++-.+.+  .+..|+..+-.      +...+|+.++.++.+|+.  .
T Consensus        85 es~epvl~llqs~d~~Iq~aa~~alGnlAVn~enk~liv~l~Gl~~Li~qmmt------d~vevqcnaVgCitnLaT--~  156 (550)
T KOG4224|consen   85 ESNEPVLALLQSCDKCIQCAAGEALGNLAVNMENKGLIVSLLGLDLLILQMMT------DGVEVQCNAVGCITNLAT--F  156 (550)
T ss_pred             hhhhHHHHHHhCcchhhhhhhhhhhccceeccCCceEEEeccChHHHHHHhcC------CCcEEEeeehhhhhhhhc--c
Confidence            44577888899999999999999999999 9998888888  77776655443      233488889999999999  7


Q ss_pred             chhHHHHHhcCCHHHHHhcCCCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHh
Q 044999           87 GALATEIGQSGVINSVLRLFPQSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLNSCNDGTRRYLLEILSAL  166 (461)
Q Consensus        87 ~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l  166 (461)
                      ++++..+...|++.++.++-++.+..+|..+..++.++. +..++|+.++..|++|.|+.++.+.++++|.+++.++.++
T Consensus       157 d~nk~kiA~sGaL~pltrLakskdirvqrnatgaLlnmT-hs~EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnI  235 (550)
T KOG4224|consen  157 DSNKVKIARSGALEPLTRLAKSKDIRVQRNATGALLNMT-HSRENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNI  235 (550)
T ss_pred             ccchhhhhhccchhhhHhhcccchhhHHHHHHHHHHHhh-hhhhhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhh
Confidence            889999999999999999999999999999999999999 6779999999999999999999999999999999999999


Q ss_pred             hCChHHHHHHHhcC--CHHHHHHHHcCCCHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhcccCCHHHHHHHHHH
Q 044999          167 ALLREVRRVLICLG--GLRYLVEAVSFGSMVSRERACQAIGLLAVTGRARRLLVELGVIPGLVELFHIGDWTTKLVAGNT  244 (461)
Q Consensus       167 ~~~~~~~~~~~~~~--~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~  244 (461)
                      +.+...|+.+.+.+  .++.|++++.++++.++..|.-+|++++...+.+..+++.|.+|.++++++++........+.+
T Consensus       236 aVd~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaC  315 (550)
T KOG4224|consen  236 AVDRRARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQREIVEAGSLPLLVELLQSPMGPLILASVAC  315 (550)
T ss_pred             hhhHHHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccchhhhHHHhcCCchHHHHHHhCcchhHHHHHHHH
Confidence            99999999999988  9999999999999999999999999999999999999999999999999998887777778889


Q ss_pred             HHHHhcCccchhhhhhcCCHHHHHHHhCCC-ChhHHHHHHHHHHHhcc-CcccHHHHH-----HHHHHHhccCCHHHHHH
Q 044999          245 LGVVAAHVEYITPVAEAGAIPLYAELLQGP-DSTGKEISEDVFCILAV-SEANANAIA-----EHLVRILREGDNEANAA  317 (461)
Q Consensus       245 L~~l~~~~~~~~~~~~~g~i~~L~~ll~~~-~~~~~~~a~~~L~~l~~-~~~~~~~i~-----~~l~~ll~~~~~~~~~~  317 (461)
                      ++|++.++-+...+++.|++..|+.++... +++++-+|..+|.||+. ...++..+.     +.+..++.++.-+++..
T Consensus       316 IrnisihplNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvqse  395 (550)
T KOG4224|consen  316 IRNISIHPLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQSE  395 (550)
T ss_pred             HhhcccccCcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHH
Confidence            999999999999999999999999999987 45699999999999965 666777776     99999999999999999


Q ss_pred             HHHHHHHhhCCCCchhHHhhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCChhhHHHHHhC------CChHHHHHhccC
Q 044999          318 AADVLWDLAGYKHSVPVIRNSGAIPILVNLLRGENDEVREKVSGAIAQLSYNEADRVALADA------GAVPIMIELLHD  391 (461)
Q Consensus       318 a~~~L~~l~~~~~~~~~l~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~------~~i~~L~~ll~~  391 (461)
                      .-.++..|+-++..+..+.+.|.++.|+.+..+.+.+++..++.+|.|++.+-++-.+++++      |+-..|++++.+
T Consensus       396 isac~a~Lal~d~~k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss~v~~YarviEawd~P~~gi~g~L~Rfl~S  475 (550)
T KOG4224|consen  396 ISACIAQLALNDNDKEALLDSGIIPILIPWTGSESEEVRGNAAAALINLSSDVEHYARVIEAWDHPVQGIQGRLARFLAS  475 (550)
T ss_pred             HHHHHHHHHhccccHHHHhhcCCcceeecccCccchhhcccHHHHHHhhhhhhHHHHHHHHHhcCcchhHHHHHHHHHhh
Confidence            99999999999999999999999999999999999999999999999999977766777653      445678888888


Q ss_pred             CCHHHHHHHHHHHHHhcCCCcch-HHHHHhhCCchHHhHHH
Q 044999          392 ESEELRDNAAESLINFSEDPLQH-ERISEAIGIPSFQSMQS  431 (461)
Q Consensus       392 ~~~~~~~~a~~~L~~l~~~~~~~-~~l~~~~~~~~~~~l~~  431 (461)
                      ....++.-+.|.+..|..+...+ ..+.+  ....+.++.+
T Consensus       476 ~~~tf~hia~wTI~qLle~h~~~~~~~i~--~~ddii~~~~  514 (550)
T KOG4224|consen  476 HELTFRHIARWTIQQLLEDHDLPLTAFIQ--SSDDIIELLN  514 (550)
T ss_pred             hHHHHHHHHHHHHHHHHHhCCccHHHHHh--CchhHHHHHH
Confidence            88899999999999998776543 33332  3334444443

>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=3.7e-34  Score=262.74  Aligned_cols=377  Identities=18%  Similarity=0.214  Sum_probs=327.2

Q ss_pred             hHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHhcCC-CCCHHHHHHHHHHHHHHhcc
Q 044999           49 TIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQADGALATEIGQSGVINSVLRLFP-QSDDSFRTVLVKCLRVFVTF  127 (461)
Q Consensus        49 ~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~ll~-~~~~~~~~~~~~~l~~l~~~  127 (461)
                      ..+..+..+.+      +++..|..+...+..+.+.+.......+...|.++.+|..|. +.++.++..+++++.+++..
T Consensus        67 ~~~~~~~~~~S------~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsg  140 (514)
T KOG0166|consen   67 NLELMLAALYS------DDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASG  140 (514)
T ss_pred             hhHHHHHHHhC------CCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcC
Confidence            46777777776      566778888888888887533344455556699999999997 55699999999999999999


Q ss_pred             ChhhHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHhh-CChHHHHHHHhcCCHHHHHHHHcCCCH-HHHHHHHHHHH
Q 044999          128 GNENRVIVARNGGLEIVIDLLNSCNDGTRRYLLEILSALA-LLREVRRVLICLGGLRYLVEAVSFGSM-VSRERACQAIG  205 (461)
Q Consensus       128 ~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~-~~~~~~~~~~~~~~l~~l~~~l~~~~~-~~~~~a~~~L~  205 (461)
                      ..+.-..+++.|+++.|+.++.+++..+++.|+++|+|++ ..+..|..+++.|.++.|+.++...+. ...+.+.++|.
T Consensus       141 tse~T~~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~Ls  220 (514)
T KOG0166|consen  141 TSEQTKVVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLS  220 (514)
T ss_pred             chhhccccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHH
Confidence            9899999999999999999999999999999999999999 678889999999999999999988866 78899999999


Q ss_pred             HhhcCchh-HHHHHhcCChHHHHHhcccCCHHHHHHHHHHHHHHhcC-ccchhhhhhcCCHHHHHHHhCCCChhHHHHHH
Q 044999          206 LLAVTGRA-RRLLVELGVIPGLVELFHIGDWTTKLVAGNTLGVVAAH-VEYITPVAEAGAIPLYAELLQGPDSTGKEISE  283 (461)
Q Consensus       206 ~l~~~~~~-~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~  283 (461)
                      ||+.+... ...-.-..++|.|..++.+.|+++...|++++.+|+.+ ++.-..+++.|+++.|+.+|...++.++..|+
T Consensus       221 Nlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaL  300 (514)
T KOG0166|consen  221 NLCRGKNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPAL  300 (514)
T ss_pred             HHHcCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHH
Confidence            99998843 22222245899999999999999999999999999988 77778888999999999999999999999999


Q ss_pred             HHHHHhccCcccHHHHH------HHHHHHhc-cCCHHHHHHHHHHHHHhhC-CCCchhHHhhcCCHHHHHHhhcCCCHHH
Q 044999          284 DVFCILAVSEANANAIA------EHLVRILR-EGDNEANAAAADVLWDLAG-YKHSVPVIRNSGAIPILVNLLRGENDEV  355 (461)
Q Consensus       284 ~~L~~l~~~~~~~~~i~------~~l~~ll~-~~~~~~~~~a~~~L~~l~~-~~~~~~~l~~~g~i~~L~~ll~~~~~~v  355 (461)
                      ++++|++.+.+.+.+.+      +.+..++. +....++.+|+|++.|++. +.+..+.+++.|++|.|+.++++.+.++
T Consensus       301 RaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~  380 (514)
T KOG0166|consen  301 RAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTAEFDI  380 (514)
T ss_pred             hhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccchHH
Confidence            99999988888777665      88888887 4566699999999999995 5678899999999999999999999999


Q ss_pred             HHHHHHHHHHhcC--ChhhHHHHHhCCChHHHHHhccCCCHHHHHHHHHHHHHhcCCCcc---------hHHHHHhhCCc
Q 044999          356 REKVSGAIAQLSY--NEADRVALADAGAVPIMIELLHDESEELRDNAAESLINFSEDPLQ---------HERISEAIGIP  424 (461)
Q Consensus       356 ~~~a~~~L~~l~~--~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~---------~~~l~~~~~~~  424 (461)
                      |++|+|++.|++.  +++.-..+++.|+|+++..++...+..+...+..++.|+....+.         ...+.+++|..
T Consensus       381 rKEAawaIsN~ts~g~~~qi~yLv~~giI~plcdlL~~~D~~ii~v~Ld~l~nil~~~e~~~~~~~n~~~~~IEe~ggld  460 (514)
T KOG0166|consen  381 RKEAAWAISNLTSSGTPEQIKYLVEQGIIKPLCDLLTCPDVKIILVALDGLENILKVGEAEKNRGTNPLAIMIEEAGGLD  460 (514)
T ss_pred             HHHHHHHHHhhcccCCHHHHHHHHHcCCchhhhhcccCCChHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHccChh
Confidence            9999999999999  777778889999999999999888999999999999998654432         34677888998


Q ss_pred             hHHhHHH
Q 044999          425 SFQSMQS  431 (461)
Q Consensus       425 ~~~~l~~  431 (461)
                      .+..++.
T Consensus       461 kiE~LQ~  467 (514)
T KOG0166|consen  461 KIENLQS  467 (514)
T ss_pred             HHHHhhc
Confidence            8887775

>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.1e-31  Score=246.58  Aligned_cols=394  Identities=18%  Similarity=0.226  Sum_probs=335.8

Q ss_pred             HHHHHHHhhcCCHHHHHHHHHHHHhhc----CCCchhHHHh-hHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHhcCC
Q 044999           12 FNRFEQAVVSGSEALQVKALTKLARVS----KFAPQDILAA-TIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQAD   86 (461)
Q Consensus        12 ~~~l~~ll~~~~~~~~~~a~~~l~~la----~~~~~~~l~~-~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~   86 (461)
                      .+..+..+.|.++..+..+...+..+.    ++.....+.. ++|.++..|..    + +++..|..|+++|.+++.+ .
T Consensus        68 ~~~~~~~~~S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~----~-~~~~lq~eAAWaLTnIAsg-t  141 (514)
T KOG0166|consen   68 LELMLAALYSDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSR----D-DNPTLQFEAAWALTNIASG-T  141 (514)
T ss_pred             hHHHHHHHhCCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHcc----C-CChhHHHHHHHHHHHHhcC-c
Confidence            577788888999988988888888777    3333445555 99999999985    3 4688999999999999997 6


Q ss_pred             chhHHHHHhcCCHHHHHhcCCCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhcCCCh-HHHHHHHHHHHH
Q 044999           87 GALATEIGQSGVINSVLRLFPQSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLNSCND-GTRRYLLEILSA  165 (461)
Q Consensus        87 ~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~-~~~~~a~~~L~~  165 (461)
                      .+....+.+.|.++.+++++.+++..++.++++++.+++.+++.+|..+...|+++.|+.++...++ .....+.++|.|
T Consensus       142 se~T~~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsN  221 (514)
T KOG0166|consen  142 SEQTKVVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSN  221 (514)
T ss_pred             hhhccccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHH
Confidence            6777788899999999999999999999999999999999999999999999999999999988776 788999999999


Q ss_pred             hhCChHHHHH-HHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCchh-HHHHHhcCChHHHHHhcccCCHHHHHHHHH
Q 044999          166 LALLREVRRV-LICLGGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRA-RRLLVELGVIPGLVELFHIGDWTTKLVAGN  243 (461)
Q Consensus       166 l~~~~~~~~~-~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~-~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~  243 (461)
                      +|.+...... -.-..+++.|..++.+.|+++...|++++.+|+..... -+.+.+.|+++.|+++|.+.+..++..|++
T Consensus       222 lcrgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLR  301 (514)
T KOG0166|consen  222 LCRGKNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALR  301 (514)
T ss_pred             HHcCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHh
Confidence            9955432222 22245799999999999999999999999999988777 788999999999999999999999999999


Q ss_pred             HHHHHhcC-ccchhhhhhcCCHHHHHHHhCC-CChhHHHHHHHHHHHhccCcc-cHHHHH-----HHHHHHhccCCHHHH
Q 044999          244 TLGVVAAH-VEYITPVAEAGAIPLYAELLQG-PDSTGKEISEDVFCILAVSEA-NANAIA-----EHLVRILREGDNEAN  315 (461)
Q Consensus       244 ~L~~l~~~-~~~~~~~~~~g~i~~L~~ll~~-~~~~~~~~a~~~L~~l~~~~~-~~~~i~-----~~l~~ll~~~~~~~~  315 (461)
                      +++|+... +.....++..|++|.|..++.. ....+++.|++++.|++.+.. ....+.     |.|+++|.+++..+|
T Consensus       302 aiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~r  381 (514)
T KOG0166|consen  302 AIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTAEFDIR  381 (514)
T ss_pred             hccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccchHHH
Confidence            99999888 5666777888999999999984 456699999999999966544 333343     999999999999999


Q ss_pred             HHHHHHHHHhhCC--CCchhHHhhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcC-C--------hhhHHHHHhCCChHH
Q 044999          316 AAAADVLWDLAGY--KHSVPVIRNSGAIPILVNLLRGENDEVREKVSGAIAQLSY-N--------EADRVALADAGAVPI  384 (461)
Q Consensus       316 ~~a~~~L~~l~~~--~~~~~~l~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~-~--------~~~~~~~~~~~~i~~  384 (461)
                      .+|++++.|++..  ++....+++.|+++.++.+|.-.+..+...++.+|.++-. .        ......+-++||+..
T Consensus       382 KEAawaIsN~ts~g~~~qi~yLv~~giI~plcdlL~~~D~~ii~v~Ld~l~nil~~~e~~~~~~~n~~~~~IEe~ggldk  461 (514)
T KOG0166|consen  382 KEAAWAISNLTSSGTPEQIKYLVEQGIIKPLCDLLTCPDVKIILVALDGLENILKVGEAEKNRGTNPLAIMIEEAGGLDK  461 (514)
T ss_pred             HHHHHHHHhhcccCCHHHHHHHHHcCCchhhhhcccCCChHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHccChhH
Confidence            9999999999954  6677888899999999999988888888888888887766 2        223456678999999


Q ss_pred             HHHhccCCCHHHHHHHHHHHHHhcCCC
Q 044999          385 MIELLHDESEELRDNAAESLINFSEDP  411 (461)
Q Consensus       385 L~~ll~~~~~~~~~~a~~~L~~l~~~~  411 (461)
                      +-.+-.+.+.++-..|...+..--..+
T Consensus       462 iE~LQ~hen~~Iy~~A~~II~~yf~~e  488 (514)
T KOG0166|consen  462 IENLQSHENEEIYKKAYKIIDTYFSEE  488 (514)
T ss_pred             HHHhhccccHHHHHHHHHHHHHhcCCC
Confidence            999888999999999999998875543

>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]

Probab=100.00  E-value=2.8e-31  Score=226.16  Aligned_cols=375  Identities=15%  Similarity=0.176  Sum_probs=314.6

Q ss_pred             hHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHhcCCC-CCHHHHHHHHHHHHHHhcc
Q 044999           49 TIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQADGALATEIGQSGVINSVLRLFPQ-SDDSFRTVLVKCLRVFVTF  127 (461)
Q Consensus        49 ~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~ll~~-~~~~~~~~~~~~l~~l~~~  127 (461)
                      -+|.+.+.|.+      +|.+.|..|..-...+.+.........+.+.|++|.++++|+. ...-.+-.+++++.++++.
T Consensus        72 elp~lt~~l~S------dDie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSG  145 (526)
T COG5064          72 ELPQLTQQLFS------DDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASG  145 (526)
T ss_pred             hhHHHHHHHhh------hHHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccC
Confidence            78999988876      6777777777777777664344456677899999999999954 4455678899999999987


Q ss_pred             ChhhHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHhh-CChHHHHHHHhcCCHHHHHHHHcCCC--HHHHHHHHHHH
Q 044999          128 GNENRVIVARNGGLEIVIDLLNSCNDGTRRYLLEILSALA-LLREVRRVLICLGGLRYLVEAVSFGS--MVSRERACQAI  204 (461)
Q Consensus       128 ~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~-~~~~~~~~~~~~~~l~~l~~~l~~~~--~~~~~~a~~~L  204 (461)
                      .....+.+++.|++|.++.+|.+.+.++++.++++|.|++ ..+..|..+.+.|.++.++.++.+..  ..+.+.+.++|
T Consensus       146 tt~QTkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtL  225 (526)
T COG5064         146 TTQQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTL  225 (526)
T ss_pred             cccceEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHH
Confidence            7666778889999999999999999999999999999999 56777889999999999999998774  47888999999


Q ss_pred             HHhhcCch---hHHHHHhcCChHHHHHhcccCCHHHHHHHHHHHHHHhcC-ccchhhhhhcCCHHHHHHHhCCCChhHHH
Q 044999          205 GLLAVTGR---ARRLLVELGVIPGLVELFHIGDWTTKLVAGNTLGVVAAH-VEYITPVAEAGAIPLYAELLQGPDSTGKE  280 (461)
Q Consensus       205 ~~l~~~~~---~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~g~i~~L~~ll~~~~~~~~~  280 (461)
                      .||+....   ++..+..  .+|.|.+++.+.++++...|++++.+|+.. .+....+++.|+.+.|+++|.+++..++.
T Consensus       226 SNlcRGknP~P~w~~isq--alpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqt  303 (526)
T COG5064         226 SNLCRGKNPPPDWSNISQ--ALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQT  303 (526)
T ss_pred             HHhhCCCCCCCchHHHHH--HHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccC
Confidence            99997653   2555544  799999999999999999999999999998 55667788889999999999999999999


Q ss_pred             HHHHHHHHhccCcccHHHHH------HHHHHHhccCCHHHHHHHHHHHHHhh-CCCCchhHHhhcCCHHHHHHhhcCCCH
Q 044999          281 ISEDVFCILAVSEANANAIA------EHLVRILREGDNEANAAAADVLWDLA-GYKHSVPVIRNSGAIPILVNLLRGEND  353 (461)
Q Consensus       281 ~a~~~L~~l~~~~~~~~~i~------~~l~~ll~~~~~~~~~~a~~~L~~l~-~~~~~~~~l~~~g~i~~L~~ll~~~~~  353 (461)
                      .+++...|+....+.+.+++      +.+..+|.++...++..||+.+.|++ .+.+..+.+++.+.+|.|+.+|.+.+.
T Consensus       304 PalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls~ae~  383 (526)
T COG5064         304 PALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSAEY  383 (526)
T ss_pred             HHHHhhcCeeecCccceehheecccHHHHHHHhcChhhhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHHHHHH
Confidence            99999999987777766655      78888899998999999999999999 457788889999999999999999999


Q ss_pred             HHHHHHHHHHHHhcC----ChhhHHHHHhCCChHHHHHhccCCCHHHHHHHHHHHHHhcCCCc------------chHHH
Q 044999          354 EVREKVSGAIAQLSY----NEADRVALADAGAVPIMIELLHDESEELRDNAAESLINFSEDPL------------QHERI  417 (461)
Q Consensus       354 ~v~~~a~~~L~~l~~----~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~------------~~~~l  417 (461)
                      .+++.|+|++.|.+.    .|+.-..+++.|++.+|..++...+..+-+.++.++.|+..-.+            ....+
T Consensus       384 k~kKEACWAisNatsgg~~~PD~iryLv~qG~IkpLc~~L~~~dNkiiev~LD~~eniLk~Ge~d~~~~~~nin~ya~~v  463 (526)
T COG5064         384 KIKKEACWAISNATSGGLNRPDIIRYLVSQGFIKPLCDLLDVVDNKIIEVALDAIENILKVGEQDRLRYGKNINIYAVYV  463 (526)
T ss_pred             HHHHHHHHHHHhhhccccCCchHHHHHHHccchhHHHHHHhccCccchhhhHHHHHHHHhhhhHHHHhccCCccHHHHHH
Confidence            999999999999988    45667788899999999999977666666666777777754432            12334


Q ss_pred             HHhhCCchHHhHHH
Q 044999          418 SEAIGIPSFQSMQS  431 (461)
Q Consensus       418 ~~~~~~~~~~~l~~  431 (461)
                      .++||...+..+++
T Consensus       464 E~Aggmd~I~~~Q~  477 (526)
T COG5064         464 EKAGGMDAIHGLQD  477 (526)
T ss_pred             HhcccHHHHHHhhh
Confidence            44777777666554

>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]

Probab=100.00  E-value=2.8e-30  Score=220.04  Aligned_cols=403  Identities=18%  Similarity=0.198  Sum_probs=330.3

Q ss_pred             HHHhHHHHHHHhhcCCHHHHHHHHHHHHhhc---C-CCchhHHHh-hHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHH
Q 044999            8 WEEAFNRFEQAVVSGSEALQVKALTKLARVS---K-FAPQDILAA-TIPILARLLGENNFSGNLTRSIQQAAAYCLKQIA   82 (461)
Q Consensus         8 ~~~~~~~l~~ll~~~~~~~~~~a~~~l~~la---~-~~~~~~l~~-~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~   82 (461)
                      ....+|.+.+.+.|.|-+.+..|..-+..+.   + +.....+.. ++|.+++++..    . ...-.|..|+++|.+++
T Consensus        69 ~~~elp~lt~~l~SdDie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~----~-q~~mlqfEAaWalTNia  143 (526)
T COG5064          69 FYSELPQLTQQLFSDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDE----I-QRDMLQFEAAWALTNIA  143 (526)
T ss_pred             hhhhhHHHHHHHhhhHHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHh----c-chhHHHHHHHHHHhhhc
Confidence            4456788999999999999999988777665   3 333444555 99999999964    2 22345666999999999


Q ss_pred             hcCCchhHHHHHhcCCHHHHHhcCCCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhcCCCh--HHHHHHH
Q 044999           83 SQADGALATEIGQSGVINSVLRLFPQSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLNSCND--GTRRYLL  160 (461)
Q Consensus        83 ~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~--~~~~~a~  160 (461)
                      ++ ...-...+++.|.+|.++++|.+++.+|+.++.+++.+++.+++.+|..+.+.|+++.++.++.++..  .+.+.+.
T Consensus       144 SG-tt~QTkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~T  222 (526)
T COG5064         144 SG-TTQQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNAT  222 (526)
T ss_pred             cC-cccceEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhH
Confidence            95 44444456799999999999999999999999999999999999999999999999999999887655  7889999


Q ss_pred             HHHHHhh--CChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCchh-HHHHHhcCChHHHHHhcccCCHHH
Q 044999          161 EILSALA--LLREVRRVLICLGGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRA-RRLLVELGVIPGLVELFHIGDWTT  237 (461)
Q Consensus       161 ~~L~~l~--~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~-~~~~~~~~~i~~L~~ll~~~~~~~  237 (461)
                      ++|.|+|  .++..-...+. ..+|.|.+++.+.++++...|++++..++..+.. -..+.+.|..+.|+++|.+++..+
T Consensus       223 WtLSNlcRGknP~P~w~~is-qalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~i  301 (526)
T COG5064         223 WTLSNLCRGKNPPPDWSNIS-QALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKI  301 (526)
T ss_pred             HHHHHhhCCCCCCCchHHHH-HHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccc
Confidence            9999999  34443333332 2589999999999999999999999999998877 778899999999999999999999


Q ss_pred             HHHHHHHHHHHhcC-ccchhhhhhcCCHHHHHHHhCCCChhHHHHHHHHHHHhccCccc-HHHHH-----HHHHHHhccC
Q 044999          238 KLVAGNTLGVVAAH-VEYITPVAEAGAIPLYAELLQGPDSTGKEISEDVFCILAVSEAN-ANAIA-----EHLVRILREG  310 (461)
Q Consensus       238 ~~~a~~~L~~l~~~-~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~-~~~i~-----~~l~~ll~~~  310 (461)
                      +..+++.++|+... +.....++..|+++.+..+|.++...+++.+++++.|++..... .+.+.     |+|+++|.+.
T Consensus       302 qtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls~a  381 (526)
T COG5064         302 QTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSA  381 (526)
T ss_pred             cCHHHHhhcCeeecCccceehheecccHHHHHHHhcChhhhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHHHH
Confidence            99999999999887 55666777899999999999999889999999999999655443 33333     9999999999


Q ss_pred             CHHHHHHHHHHHHHhhCC----CCchhHHhhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcC-Ch-----------hhHH
Q 044999          311 DNEANAAAADVLWDLAGY----KHSVPVIRNSGAIPILVNLLRGENDEVREKVSGAIAQLSY-NE-----------ADRV  374 (461)
Q Consensus       311 ~~~~~~~a~~~L~~l~~~----~~~~~~l~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~-~~-----------~~~~  374 (461)
                      +-.++..||+++.|...+    |+....++..|++..|..+|.-.+..+-+.++-++.|+-. .+           .+..
T Consensus       382 e~k~kKEACWAisNatsgg~~~PD~iryLv~qG~IkpLc~~L~~~dNkiiev~LD~~eniLk~Ge~d~~~~~~nin~ya~  461 (526)
T COG5064         382 EYKIKKEACWAISNATSGGLNRPDIIRYLVSQGFIKPLCDLLDVVDNKIIEVALDAIENILKVGEQDRLRYGKNINIYAV  461 (526)
T ss_pred             HHHHHHHHHHHHHhhhccccCCchHHHHHHHccchhHHHHHHhccCccchhhhHHHHHHHHhhhhHHHHhccCCccHHHH
Confidence            999999999999999964    6677888899999999999997766666666777766655 22           1223


Q ss_pred             HHHhCCChHHHHHhccCCCHHHHHHHHHHHHHhcCCCcchHHH
Q 044999          375 ALADAGAVPIMIELLHDESEELRDNAAESLINFSEDPLQHERI  417 (461)
Q Consensus       375 ~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~l  417 (461)
                      .+-++|++..+..+-.+.+..+-..|..++.....+.+....+
T Consensus       462 ~vE~Aggmd~I~~~Q~s~n~~iy~KAYsIIe~fFgeeD~vd~l  504 (526)
T COG5064         462 YVEKAGGMDAIHGLQDSVNRTIYDKAYSIIEKFFGEEDAVDEL  504 (526)
T ss_pred             HHHhcccHHHHHHhhhccccHHHHHHHHHHHHHcccchhhhhc
Confidence            3345899999999988899999999999888877555444333

>PF05804 KAP: Kinesin-associated protein (KAP)

Probab=99.97  E-value=1.6e-26  Score=224.77  Aligned_cols=388  Identities=18%  Similarity=0.234  Sum_probs=327.0

Q ss_pred             HHHhHHHHHHHhhcCCHHHHHHHHHHHHhhc-CCCchhHHHh--hHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHhc
Q 044999            8 WEEAFNRFEQAVVSGSEALQVKALTKLARVS-KFAPQDILAA--TIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQ   84 (461)
Q Consensus         8 ~~~~~~~l~~ll~~~~~~~~~~a~~~l~~la-~~~~~~~l~~--~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~   84 (461)
                      .++..+++-.++...+...+ .+...|.+++ +......+.+  +++.|+++|.+    +  +......++.+|.+|+. 
T Consensus       248 ~~~~~kk~~~l~~kQeqLlr-v~~~lLlNLAed~~ve~kM~~~~iV~~Lv~~Ldr----~--n~ellil~v~fLkkLSi-  319 (708)
T PF05804_consen  248 YEKELKKLQTLIRKQEQLLR-VAFYLLLNLAEDPRVELKMVNKGIVSLLVKCLDR----E--NEELLILAVTFLKKLSI-  319 (708)
T ss_pred             HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhcChHHHHHHHhcCCHHHHHHHHcC----C--CHHHHHHHHHHHHHHcC-
Confidence            34555666666666554444 7888999999 8888888877  99999999987    3  45677779999999999 


Q ss_pred             CCchhHHHHHhcCCHHHHHhcCCCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHH
Q 044999           85 ADGALATEIGQSGVINSVLRLFPQSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLNSCNDGTRRYLLEILS  164 (461)
Q Consensus        85 ~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~  164 (461)
                       ..+++..+.+.|+++.|.+++.+++.+.+..+.+.+.|++ .+++.|..+++.|.+|.|+.++.++  ..+..++.+|.
T Consensus       320 -~~ENK~~m~~~giV~kL~kLl~s~~~~l~~~aLrlL~NLS-fd~~~R~~mV~~GlIPkLv~LL~d~--~~~~val~iLy  395 (708)
T PF05804_consen  320 -FKENKDEMAESGIVEKLLKLLPSENEDLVNVALRLLFNLS-FDPELRSQMVSLGLIPKLVELLKDP--NFREVALKILY  395 (708)
T ss_pred             -CHHHHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHhC-cCHHHHHHHHHCCCcHHHHHHhCCC--chHHHHHHHHH
Confidence             7889999999999999999999999999999999999999 5668999999999999999999864  46778999999


Q ss_pred             HhhCChHHHHHHHhcCCHHHHHHHHcCC-CHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhcccCCHHHHHHHHH
Q 044999          165 ALALLREVRRVLICLGGLRYLVEAVSFG-SMVSRERACQAIGLLAVTGRARRLLVELGVIPGLVELFHIGDWTTKLVAGN  243 (461)
Q Consensus       165 ~l~~~~~~~~~~~~~~~l~~l~~~l~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~  243 (461)
                      +++.+++.+..+...++++.+++++-+. ++.+...++..+.|++.+..+.+.+.+.++++.|++........   ....
T Consensus       396 ~LS~dd~~r~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~rnaqlm~~g~gL~~L~~ra~~~~D~---lLlK  472 (708)
T PF05804_consen  396 NLSMDDEARSMFAYTDCIPQLMQMLLENSEEEVQLELIALLINLALNKRNAQLMCEGNGLQSLMKRALKTRDP---LLLK  472 (708)
T ss_pred             HhccCHhhHHHHhhcchHHHHHHHHHhCCCccccHHHHHHHHHHhcCHHHHHHHHhcCcHHHHHHHHHhcccH---HHHH
Confidence            9999999999999999999999987554 66777888999999999999998999989999999876543322   2345


Q ss_pred             HHHHHhcCc-cchhhhhhcCCHHHHHHHhCCC-ChhHHHHHHHHHHHhccCcccHHHHH------HHHHHHhccC--CHH
Q 044999          244 TLGVVAAHV-EYITPVAEAGAIPLYAELLQGP-DSTGKEISEDVFCILAVSEANANAIA------EHLVRILREG--DNE  313 (461)
Q Consensus       244 ~L~~l~~~~-~~~~~~~~~g~i~~L~~ll~~~-~~~~~~~a~~~L~~l~~~~~~~~~i~------~~l~~ll~~~--~~~  313 (461)
                      .++|++.++ ..+..+.  +.+..|+.++..+ +++....++++|.||+..+..-..+.      |.+.++|..+  .++
T Consensus       473 lIRNiS~h~~~~k~~f~--~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dD  550 (708)
T PF05804_consen  473 LIRNISQHDGPLKELFV--DFIGDLAKIVSSGDSEEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDD  550 (708)
T ss_pred             HHHHHHhcCchHHHHHH--HHHHHHHHHhhcCCcHHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChH
Confidence            999999995 5555443  4677777877665 78899999999999987665444444      8888888655  568


Q ss_pred             HHHHHHHHHHHhhCCCCchhHHhhcCCHHHHHHhhcCC--CHHHHHHHHHHHHHhcCChhhHHHHHh-CCChHHHHHhcc
Q 044999          314 ANAAAADVLWDLAGYKHSVPVIRNSGAIPILVNLLRGE--NDEVREKVSGAIAQLSYNEADRVALAD-AGAVPIMIELLH  390 (461)
Q Consensus       314 ~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~ll~~~--~~~v~~~a~~~L~~l~~~~~~~~~~~~-~~~i~~L~~ll~  390 (461)
                      +.-.++..++.++..+.+...+.+.|.++.|++++...  +.+...+.+.++.++..+++.+..+.+ .+++..|+.+++
T Consensus       551 l~LE~Vi~~gtla~d~~~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~f~~ll~h~~tr~~ll~~~~~~~ylidL~~  630 (708)
T PF05804_consen  551 LLLEVVILLGTLASDPECAPLLAKSGLIPTLIELLNAKQEDDEIVLQILYVFYQLLFHEETREVLLKETEIPAYLIDLMH  630 (708)
T ss_pred             HHHHHHHHHHHHHCCHHHHHHHHhCChHHHHHHHHHhhCchHHHHHHHHHHHHHHHcChHHHHHHHhccchHHHHHHHhc
Confidence            88999999999999999999999999999999999854  688999999999999998888888865 677889999999


Q ss_pred             CCCHHHHHHHHHHHHHhcCCCc
Q 044999          391 DESEELRDNAAESLINFSEDPL  412 (461)
Q Consensus       391 ~~~~~~~~~a~~~L~~l~~~~~  412 (461)
                      ++|++++..|-.+|--++..++
T Consensus       631 d~N~~ir~~~d~~Ldii~e~d~  652 (708)
T PF05804_consen  631 DKNAEIRKVCDNALDIIAEYDE  652 (708)
T ss_pred             CCCHHHHHHHHHHHHHHHHhCH
Confidence            9999999999999998887764

>PF05804 KAP: Kinesin-associated protein (KAP)

Probab=99.96  E-value=6.8e-26  Score=220.38  Aligned_cols=372  Identities=18%  Similarity=0.210  Sum_probs=313.7

Q ss_pred             HHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHhcCCCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhc
Q 044999           70 IQQAAAYCLKQIASQADGALATEIGQSGVINSVLRLFPQSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLN  149 (461)
Q Consensus        70 ~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll~  149 (461)
                      ..+.+...|.|+++  +......+...|+++.|+++|.+++.++...++.++.+++. ..+++..+.+.|+++.|.+++.
T Consensus       265 Llrv~~~lLlNLAe--d~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi-~~ENK~~m~~~giV~kL~kLl~  341 (708)
T PF05804_consen  265 LLRVAFYLLLNLAE--DPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSI-FKENKDEMAESGIVEKLLKLLP  341 (708)
T ss_pred             HHHHHHHHHHHHhc--ChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcC-CHHHHHHHHHcCCHHHHHHHhc
Confidence            44558889999999  88999999999999999999999999988889999999995 4489999999999999999999


Q ss_pred             CCChHHHHHHHHHHHHhhCChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHh
Q 044999          150 SCNDGTRRYLLEILSALALLREVRRVLICLGGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRARRLLVELGVIPGLVEL  229 (461)
Q Consensus       150 ~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~l  229 (461)
                      +.+.+++..++++|.|++.+++.|..+++.|++|.|+.++.++  ..+..++.+|.+++..++.+..+...++++.++++
T Consensus       342 s~~~~l~~~aLrlL~NLSfd~~~R~~mV~~GlIPkLv~LL~d~--~~~~val~iLy~LS~dd~~r~~f~~TdcIp~L~~~  419 (708)
T PF05804_consen  342 SENEDLVNVALRLLFNLSFDPELRSQMVSLGLIPKLVELLKDP--NFREVALKILYNLSMDDEARSMFAYTDCIPQLMQM  419 (708)
T ss_pred             CCCHHHHHHHHHHHHHhCcCHHHHHHHHHCCCcHHHHHHhCCC--chHHHHHHHHHHhccCHhhHHHHhhcchHHHHHHH
Confidence            9999999999999999999999999999999999999999865  45667999999999999889999999999999997


Q ss_pred             cc-cCCHHHHHHHHHHHHHHhcCccchhhhhhcCCHHHHHHHhCCC-ChhHHHHHHHHHHHhccCcc-cHHHHH---HHH
Q 044999          230 FH-IGDWTTKLVAGNTLGVVAAHVEYITPVAEAGAIPLYAELLQGP-DSTGKEISEDVFCILAVSEA-NANAIA---EHL  303 (461)
Q Consensus       230 l~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~ll~~~-~~~~~~~a~~~L~~l~~~~~-~~~~i~---~~l  303 (461)
                      +- .+++.+...++..+.|++.++.+.+.+.+.|+++.|+...... ++-    ....+.|++.++. .+..+.   ..+
T Consensus       420 Ll~~~~~~v~~eliaL~iNLa~~~rnaqlm~~g~gL~~L~~ra~~~~D~l----LlKlIRNiS~h~~~~k~~f~~~i~~L  495 (708)
T PF05804_consen  420 LLENSEEEVQLELIALLINLALNKRNAQLMCEGNGLQSLMKRALKTRDPL----LLKLIRNISQHDGPLKELFVDFIGDL  495 (708)
T ss_pred             HHhCCCccccHHHHHHHHHHhcCHHHHHHHHhcCcHHHHHHHHHhcccHH----HHHHHHHHHhcCchHHHHHHHHHHHH
Confidence            66 4566677778889999999999989999988899998875433 332    3469999999884 444444   666


Q ss_pred             HHHhccC-CHHHHHHHHHHHHHhhCCC-CchhHHhhcCCHHHHHHhhcCC--CHHHHHHHHHHHHHhcCChhhHHHHHhC
Q 044999          304 VRILREG-DNEANAAAADVLWDLAGYK-HSVPVIRNSGAIPILVNLLRGE--NDEVREKVSGAIAQLSYNEADRVALADA  379 (461)
Q Consensus       304 ~~ll~~~-~~~~~~~a~~~L~~l~~~~-~~~~~l~~~g~i~~L~~ll~~~--~~~v~~~a~~~L~~l~~~~~~~~~~~~~  379 (461)
                      +..+..+ +++....++++|+||...+ +....+.+.+.+|.|..+|..+  .+++...++..++.++.++.+...+.+.
T Consensus       496 ~~~v~~~~~ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~d~~~A~lL~~s  575 (708)
T PF05804_consen  496 AKIVSSGDSEEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLASDPECAPLLAKS  575 (708)
T ss_pred             HHHhhcCCcHHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHCCHHHHHHHHhC
Confidence            6666554 6889999999999999654 4445555789999999999855  4678889999999999999999999999


Q ss_pred             CChHHHHHhccC--CCHHHHHHHHHHHHHhcCCCcchHHHHHhhCCchHHhHHHHHHHhhhchhHHHHHHHHHhHhhhc
Q 044999          380 GAVPIMIELLHD--ESEELRDNAAESLINFSEDPLQHERISEAIGIPSFQSMQSRLTRIRASDDLMARSMRRMSIEQLT  456 (461)
Q Consensus       380 ~~i~~L~~ll~~--~~~~~~~~a~~~L~~l~~~~~~~~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~  456 (461)
                      |.++.|+++++.  .+.++..+.+.++..+..+++.|+.+.+..+  .+..++...+   + ....+++.+..++..|.
T Consensus       576 gli~~Li~LL~~kqeDdE~VlQil~~f~~ll~h~~tr~~ll~~~~--~~~ylidL~~---d-~N~~ir~~~d~~Ldii~  648 (708)
T PF05804_consen  576 GLIPTLIELLNAKQEDDEIVLQILYVFYQLLFHEETREVLLKETE--IPAYLIDLMH---D-KNAEIRKVCDNALDIIA  648 (708)
T ss_pred             ChHHHHHHHHHhhCchHHHHHHHHHHHHHHHcChHHHHHHHhccc--hHHHHHHHhc---C-CCHHHHHHHHHHHHHHH
Confidence            999999999955  5799999999999999999999988876443  4445555432   3 36778888888877653

>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]

Probab=99.89  E-value=1.2e-20  Score=179.53  Aligned_cols=357  Identities=20%  Similarity=0.222  Sum_probs=286.6

Q ss_pred             hHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHhcCCCCCHHHHHHHHHHHHHHhccC
Q 044999           49 TIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQADGALATEIGQSGVINSVLRLFPQSDDSFRTVLVKCLRVFVTFG  128 (461)
Q Consensus        49 ~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~l~~~~  128 (461)
                      .++..+.+|.+      .++.+|..|+..+.++|.. +...+..+.+.|+++.|+.++.+.+.+++.+++.++.||+...
T Consensus       234 ~lpe~i~mL~~------q~~~~qsnaaaylQHlcfg-d~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~  306 (717)
T KOG1048|consen  234 TLPEVISMLMS------QDPSVQSNAAAYLQHLCFG-DNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGK  306 (717)
T ss_pred             ccHHHHHHHhc------cChhhhHHHHHHHHHHHhh-hHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhccc
Confidence            78888999986      5677999999999999987 8889999999999999999999999999999999999999865


Q ss_pred             hh--hHHHHHHcCCHHHHHHHhcC-CChHHHHHHHHHHHHhhCChHHHHHHHhcCCHHHHHHHHcCC-------------
Q 044999          129 NE--NRVIVARNGGLEIVIDLLNS-CNDGTRRYLLEILSALALLREVRRVLICLGGLRYLVEAVSFG-------------  192 (461)
Q Consensus       129 ~~--~~~~~~~~g~i~~L~~ll~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~~l~~~-------------  192 (461)
                      ..  ++-.+.+.++++.++++|+. .|.++++....+|+||+.++..+..++.. .+..|..-.-.+             
T Consensus       307 ~~~~NKlai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D~lK~~ii~~-al~tLt~~vI~P~Sgw~~~~~~~~~  385 (717)
T KOG1048|consen  307 STDSNKLAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSNDALKMLIITS-ALSTLTDNVIIPHSGWEEEPAPRKA  385 (717)
T ss_pred             CCcccchhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchhHHHHHHHHH-HHHHHHHhhcccccccCCCCccccc
Confidence            54  89999999999999999986 68899999999999999887777666654 455554433211             


Q ss_pred             -CHHHHHHHHHHHHHhhcCchh-HHHHHh-cCChHHHHHhcc------cCCHHHHHHHHHHHHHHhcCcc------c---
Q 044999          193 -SMVSRERACQAIGLLAVTGRA-RRLLVE-LGVIPGLVELFH------IGDWTTKLVAGNTLGVVAAHVE------Y---  254 (461)
Q Consensus       193 -~~~~~~~a~~~L~~l~~~~~~-~~~~~~-~~~i~~L~~ll~------~~~~~~~~~a~~~L~~l~~~~~------~---  254 (461)
                       +.++-..+.++|+|++..... ++.|.+ .|.|..|+..++      ..+....+.++..|+|++..-+      .   
T Consensus       386 ~~~~vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~  465 (717)
T KOG1048|consen  386 EDSTVFRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQV  465 (717)
T ss_pred             ccceeeehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhH
Confidence             246677999999999996666 888887 688999998887      3467788999999999976411      0   


Q ss_pred             -----------------------hhh----------------------hhhcCCHHHHHHHhC-CCChhHHHHHHHHHHH
Q 044999          255 -----------------------ITP----------------------VAEAGAIPLYAELLQ-GPDSTGKEISEDVFCI  288 (461)
Q Consensus       255 -----------------------~~~----------------------~~~~g~i~~L~~ll~-~~~~~~~~~a~~~L~~  288 (461)
                                             +..                      +....+|.....++. +.++.+.+.++.+|-|
T Consensus       466 ~~~~~~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQN  545 (717)
T KOG1048|consen  466 LANIARLPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQN  545 (717)
T ss_pred             hhcccccccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhh
Confidence                                   000                      111123334344443 3477889999999999


Q ss_pred             hccCcc-c----HHHHH------HHHHHHhccCCHHHHHHHHHHHHHhhCCCCchhHHhhcCCHHHHHHhhcCCC-----
Q 044999          289 LAVSEA-N----ANAIA------EHLVRILREGDNEANAAAADVLWDLAGYKHSVPVIRNSGAIPILVNLLRGEN-----  352 (461)
Q Consensus       289 l~~~~~-~----~~~i~------~~l~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~ll~~~~-----  352 (461)
                      ++.... .    +..+.      +.++++|+.+++.+...++.+|.||+.+..+++.+. .++++.|++.|....     
T Consensus       546 ltA~~~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d~rnk~lig-k~a~~~lv~~Lp~~~~~~~~  624 (717)
T KOG1048|consen  546 LTAGLWTWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRDIRNKELIG-KYAIPDLVRCLPGSGPSTSL  624 (717)
T ss_pred             hhccCCcchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccCchhhhhhh-cchHHHHHHhCcCCCCCcCc
Confidence            954332 2    33332      999999999999999999999999999999999988 589999999997543     


Q ss_pred             -HHHHHHHHHHHHHhcC-ChhhHHHHHhCCChHHHHHhccC-CCHHHHHHHHHHHHHhcCCCcch
Q 044999          353 -DEVREKVSGAIAQLSY-NEADRVALADAGAVPIMIELLHD-ESEELRDNAAESLINFSEDPLQH  414 (461)
Q Consensus       353 -~~v~~~a~~~L~~l~~-~~~~~~~~~~~~~i~~L~~ll~~-~~~~~~~~a~~~L~~l~~~~~~~  414 (461)
                       .++...++.+|.++.. +..+...+.+.++++.|+-+..+ .++...+.|...|..|=...+-+
T Consensus       625 sedtv~~vc~tl~niv~~~~~nAkdl~~~~g~~kL~~I~~s~~S~k~~kaAs~vL~~lW~y~eLh  689 (717)
T KOG1048|consen  625 SEDTVRAVCHTLNNIVRKNVLNAKDLLEIKGIPKLRLISKSQHSPKEFKAASSVLDVLWQYKELH  689 (717)
T ss_pred             hHHHHHHHHHhHHHHHHHhHHHHHHHHhccChHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHh
Confidence             5788899999999997 99999999999999999999866 56788888888888875555444

>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]

Probab=99.87  E-value=1.9e-20  Score=178.21  Aligned_cols=349  Identities=19%  Similarity=0.201  Sum_probs=279.3

Q ss_pred             CHHHHHhcCCCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHhh-CC--hHHHH
Q 044999           98 VINSVLRLFPQSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLNSCNDGTRRYLLEILSALA-LL--REVRR  174 (461)
Q Consensus        98 ~l~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~-~~--~~~~~  174 (461)
                      -++..+.+|.+.++.++..++..+-.++..+.+.+..+.+.|+++.|+.++.+...+++..|+.+|.|+. ..  .+++-
T Consensus       234 ~lpe~i~mL~~q~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NKl  313 (717)
T KOG1048|consen  234 TLPEVISMLMSQDPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNKL  313 (717)
T ss_pred             ccHHHHHHHhccChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccch
Confidence            3678889999999999999999999999999999999999999999999999999999999999999999 33  34788


Q ss_pred             HHHhcCCHHHHHHHHcC-CCHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhccc--------------CCHHHHH
Q 044999          175 VLICLGGLRYLVEAVSF-GSMVSRERACQAIGLLAVTGRARRLLVELGVIPGLVELFHI--------------GDWTTKL  239 (461)
Q Consensus       175 ~~~~~~~l~~l~~~l~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~--------------~~~~~~~  239 (461)
                      .+.+.++++.++++|.. .|.++++....+|+||++++..+..+... .+..|..-.-.              .+.++-.
T Consensus       314 ai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D~lK~~ii~~-al~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf~  392 (717)
T KOG1048|consen  314 AIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSNDALKMLIITS-ALSTLTDNVIIPHSGWEEEPAPRKAEDSTVFR  392 (717)
T ss_pred             hhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchhHHHHHHHHH-HHHHHHHhhcccccccCCCCcccccccceeee
Confidence            89999999999999987 58899999999999999996666555443 34444443221              1245667


Q ss_pred             HHHHHHHHHhcC-ccchhhhhhc-CCHHHHHHHhCC------CChhHHHHHHHHHHHhccCcc-----------------
Q 044999          240 VAGNTLGVVAAH-VEYITPVAEA-GAIPLYAELLQG------PDSTGKEISEDVFCILAVSEA-----------------  294 (461)
Q Consensus       240 ~a~~~L~~l~~~-~~~~~~~~~~-g~i~~L~~ll~~------~~~~~~~~a~~~L~~l~~~~~-----------------  294 (461)
                      .+..+|+|++.. .+.|+.+.+. |.|..|+..++.      .+....++|..+|.||+..-+                 
T Consensus       393 n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~~~~  472 (717)
T KOG1048|consen  393 NVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANIARL  472 (717)
T ss_pred             hhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhccccc
Confidence            899999999986 8889999886 889999888762      266788999999999964221                 


Q ss_pred             --------------c-HHHH---------H--------------HHHHHH----h-ccCCHHHHHHHHHHHHHhhCCC--
Q 044999          295 --------------N-ANAI---------A--------------EHLVRI----L-REGDNEANAAAADVLWDLAGYK--  329 (461)
Q Consensus       295 --------------~-~~~i---------~--------------~~l~~l----l-~~~~~~~~~~a~~~L~~l~~~~--  329 (461)
                                    . ....         .              +.+++.    + .+.++.+.+.++++|-|++...  
T Consensus       473 ~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~~  552 (717)
T KOG1048|consen  473 PGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAGLWT  552 (717)
T ss_pred             ccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCCc
Confidence                          0 0010         0              444432    3 4567889999999999999541  


Q ss_pred             ---CchhHH-hhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhccCC------CHHHHHH
Q 044999          330 ---HSVPVI-RNSGAIPILVNLLRGENDEVREKVSGAIAQLSYNEADRVALADAGAVPIMIELLHDE------SEELRDN  399 (461)
Q Consensus       330 ---~~~~~l-~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~------~~~~~~~  399 (461)
                         ..+..+ .+..+++.|++++..+++.+...++.+|.||+.++.++..+. .++++.|++.+.+.      +.++...
T Consensus       553 ~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d~rnk~lig-k~a~~~lv~~Lp~~~~~~~~sedtv~~  631 (717)
T KOG1048|consen  553 WSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRDIRNKELIG-KYAIPDLVRCLPGSGPSTSLSEDTVRA  631 (717)
T ss_pred             chhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccCchhhhhhh-cchHHHHHHhCcCCCCCcCchHHHHHH
Confidence               223333 688899999999999999999999999999999999998888 56799999999553      3688899


Q ss_pred             HHHHHHHhc-CCCcchHHHHHhhCCchHHhHHHHHHHhhhchhHHHHHHHHHhHhh
Q 044999          400 AAESLINFS-EDPLQHERISEAIGIPSFQSMQSRLTRIRASDDLMARSMRRMSIEQ  454 (461)
Q Consensus       400 a~~~L~~l~-~~~~~~~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~  454 (461)
                      ++.+|.|+. .+..+.+.+.+.+|++.+..+...      .+++.+-++|.+.+..
T Consensus       632 vc~tl~niv~~~~~nAkdl~~~~g~~kL~~I~~s------~~S~k~~kaAs~vL~~  681 (717)
T KOG1048|consen  632 VCHTLNNIVRKNVLNAKDLLEIKGIPKLRLISKS------QHSPKEFKAASSVLDV  681 (717)
T ss_pred             HHHhHHHHHHHhHHHHHHHHhccChHHHHHHhcc------cCCHHHHHHHHHHHHH
Confidence            999999997 777899999999999999887774      3455555555554443

>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]

Probab=99.86  E-value=5e-20  Score=182.89  Aligned_cols=339  Identities=18%  Similarity=0.201  Sum_probs=276.4

Q ss_pred             HHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHhcCCCCC---HHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHH--
Q 044999           71 QQAAAYCLKQIASQADGALATEIGQSGVINSVLRLFPQSD---DSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVI--  145 (461)
Q Consensus        71 ~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~ll~~~~---~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~--  145 (461)
                      +...+..+..++.  +.+.+..++..|.++.|+++|...+   .+.++.+-.+|.++....++.+..-.+..++..|-  
T Consensus       211 ~ee~ar~fLemSs--s~esCaamR~SgCLpLLvQilH~~d~~~kear~~A~aALHNIVhSqPD~kr~RRE~kvL~lLeQI  288 (2195)
T KOG2122|consen  211 EEEMARTFLEMSS--SPESCAAMRRSGCLPLLVQILHGPDDEDKEARKRASAALHNIVHSQPDEKRGRREKKVLHLLEQI  288 (2195)
T ss_pred             HHHHHHHHHHhcc--CchhhHHHHhccchHHHHHHhhCCchhhHHHHHHHHHHHHHHhhcCcchhhhHHHHHHHHHHHHH
Confidence            5555578888888  7888889999999999999997543   46688888899999986666554444443333332  


Q ss_pred             -HH-------hcCCCh-------HHH-HHHHHHHHHhhCChHHHHHHHhcCCHHHHHHHHcCC------------CHHHH
Q 044999          146 -DL-------LNSCND-------GTR-RYLLEILSALALLREVRRVLICLGGLRYLVEAVSFG------------SMVSR  197 (461)
Q Consensus       146 -~l-------l~~~~~-------~~~-~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~~l~~~------------~~~~~  197 (461)
                       ..       +...++       .-+ ..|+.+|.+++.+++.|..+.+.|+++.+-+++.-+            ...+|
T Consensus       289 raYC~~~~~~lqar~~~~apa~~~H~lcaA~~~lMK~SFDEEhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLR  368 (2195)
T KOG2122|consen  289 RAYCETCWTWLQARGPAIAPASDEHQLCAALCTLMKLSFDEEHRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNALR  368 (2195)
T ss_pred             HHHHHHHHHHHHhcCCCCCCcccchhhHHHHHHHHHhhccHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHH
Confidence             21       111111       223 378889999999999999999999999998877521            23689


Q ss_pred             HHHHHHHHHhhcCchh-HHHHHh-cCChHHHHHhcccCCHHHHHHHHHHHHHHhcC-c-cchhhhhhcCCHHHHHHH-hC
Q 044999          198 ERACQAIGLLAVTGRA-RRLLVE-LGVIPGLVELFHIGDWTTKLVAGNTLGVVAAH-V-EYITPVAEAGAIPLYAEL-LQ  272 (461)
Q Consensus       198 ~~a~~~L~~l~~~~~~-~~~~~~-~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~-~-~~~~~~~~~g~i~~L~~l-l~  272 (461)
                      .++..+|.||++.+.. +..+.. .|++..++..|.+...++....+.+|+||++. + ..+..+-+.|-+..|... ++
T Consensus       369 rYa~MALTNLTFGDv~NKa~LCs~rgfMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~  448 (2195)
T KOG2122|consen  369 RYAGMALTNLTFGDVANKATLCSQRGFMEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALR  448 (2195)
T ss_pred             HHHHHHhhccccccccchhhhhhhhhHHHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHH
Confidence            9999999999999887 655554 78999999999999999999999999999998 3 455566667989888887 45


Q ss_pred             CCChhHHHHHHHHHHHhcc-CcccHHHHH------HHHHHHhccC----CHHHHHHHHHHHHHhhC----CCCchhHHhh
Q 044999          273 GPDSTGKEISEDVFCILAV-SEANANAIA------EHLVRILREG----DNEANAAAADVLWDLAG----YKHSVPVIRN  337 (461)
Q Consensus       273 ~~~~~~~~~a~~~L~~l~~-~~~~~~~i~------~~l~~ll~~~----~~~~~~~a~~~L~~l~~----~~~~~~~l~~  337 (461)
                      .......+..+.+|+||+. ..+++..|.      ..|+.+|...    .-.+.+.+.++|.|++.    ++..++.+.+
T Consensus       449 ~~kEsTLKavLSALWNLSAHcteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~  528 (2195)
T KOG2122|consen  449 NKKESTLKAVLSALWNLSAHCTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRR  528 (2195)
T ss_pred             hcccchHHHHHHHHhhhhhcccccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHH
Confidence            5566778889999999964 456777776      7888888655    35688999999999985    4778889999


Q ss_pred             cCCHHHHHHhhcCCCHHHHHHHHHHHHHhcC-ChhhHHHHHhCCChHHHHHhccCCCHHHHHHHHHHHHHhcCCC
Q 044999          338 SGAIPILVNLLRGENDEVREKVSGAIAQLSY-NEADRVALADAGAVPIMIELLHDESEELRDNAAESLINFSEDP  411 (461)
Q Consensus       338 ~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~-~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~  411 (461)
                      ++.+..|++.|++.+-.+..++|.+||||+. +++.++.+++.|.++.|..++++++..+-+.++.+|.||....
T Consensus       529 ~NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR~p~DQq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln~R  603 (2195)
T KOG2122|consen  529 HNCLQTLLQHLKSHSLTIVSNACGTLWNLSARSPEDQQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLNFR  603 (2195)
T ss_pred             hhHHHHHHHHhhhcceEEeecchhhhhhhhcCCHHHHHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhcCC
Confidence            9999999999999999999999999999999 9999999999999999999999999999999999999997665

>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]

Probab=99.84  E-value=1.4e-17  Score=147.26  Aligned_cols=422  Identities=12%  Similarity=0.073  Sum_probs=308.1

Q ss_pred             HhHHHHHHHhhcCCHHHHHHHHHHHHhhc-CCCchhHHHh--hHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHhcCC
Q 044999           10 EAFNRFEQAVVSGSEALQVKALTKLARVS-KFAPQDILAA--TIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQAD   86 (461)
Q Consensus        10 ~~~~~l~~ll~~~~~~~~~~a~~~l~~la-~~~~~~~l~~--~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~   86 (461)
                      ..-+.+...+...+..++..+..++...+ ++..|..+.+  ++..+++.|+.  .|.++|..+-..+.++|.|+|.+ +
T Consensus        42 t~ek~~~~~i~~~~~tv~~~qssC~A~~sk~ev~r~~F~~~~I~a~~le~Lrq--~psS~d~ev~~Q~~RaLgNiCyd-n  118 (604)
T KOG4500|consen   42 TSEKIQASGIMTASDTVYLFQSSCLADRSKNEVERSLFRNYCIDAEALELLRQ--TPSSPDTEVHEQCFRALGNICYD-N  118 (604)
T ss_pred             hHHHHHhcceeeccchhhhhhHHHHHHHhhhHHHHHHHHHHhhHHHHHHHHHh--CCCCCcccHHHHHHHHHhhhhcc-C
Confidence            33344455555667788899999999999 8888888877  44667777775  34445555667799999999998 8


Q ss_pred             chhHHHHHhcCCHHHHHhcCC----CCCH---HHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhc--CCChHHHH
Q 044999           87 GALATEIGQSGVINSVLRLFP----QSDD---SFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLN--SCNDGTRR  157 (461)
Q Consensus        87 ~~~~~~~~~~~~l~~L~~ll~----~~~~---~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll~--~~~~~~~~  157 (461)
                      .+++..+.+.||-+.+++.|+    ..+|   .....+...+.|...++.+.+....+.|+++.|...+.  .++....+
T Consensus       119 ~E~R~a~~~lgGaqivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e  198 (604)
T KOG4500|consen  119 NENRAAFFNLGGAQIVIDVLKPYCSKDNPANEEYSAVAFGVLHNYILDSRELRAQVADAGVLNTLAITYWIDWQNAALTE  198 (604)
T ss_pred             chhHHHHHhcCCceehHhhhccccccCCccHHHHHHHHHHHHHHhhCCcHHHHHHHHhcccHHHHHHHhhcccccHHHHH
Confidence            889999999999666666655    3333   33445555666888889899999999999999999765  34555556


Q ss_pred             HHHHHHHHhhC--ChHHHHHHHhcCCHHHHHHHHcCC-CHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhccc-C
Q 044999          158 YLLEILSALAL--LREVRRVLICLGGLRYLVEAVSFG-SMVSRERACQAIGLLAVTGRARRLLVELGVIPGLVELFHI-G  233 (461)
Q Consensus       158 ~a~~~L~~l~~--~~~~~~~~~~~~~l~~l~~~l~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~-~  233 (461)
                      ..+....++..  .+.......+......+++++... +++.++.....+...+.++..+-.+.+.|.+..++++++. .
T Consensus       199 ~ll~~f~nlls~~~e~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM~feila~~aend~Vkl~la~~gl~e~~~~lv~~~k  278 (604)
T KOG4500|consen  199 KLLAPFFNLLSFVCEMLYPFCKDCSLVFMLLQLLPSMVREDIDEMIFEILAKAAENDLVKLSLAQNGLLEDSIDLVRNMK  278 (604)
T ss_pred             HHHhccccHHHHHHHhhhhhhccchHHHHHHHHHHHhhccchhhHHHHHHHHHhcCcceeeehhhcchHHHHHHHHHhcc
Confidence            66655555552  222344555667777788888765 7789999999999999999989999999999999999885 2


Q ss_pred             CHH-------HHHHHHHHHHHHhcCccchhhhhhcC-CHHHHHHHhCCCChhHHHHHHHHHHHhccCcccHHHHH-----
Q 044999          234 DWT-------TKLVAGNTLGVVAAHVEYITPVAEAG-AIPLYAELLQGPDSTGKEISEDVFCILAVSEANANAIA-----  300 (461)
Q Consensus       234 ~~~-------~~~~a~~~L~~l~~~~~~~~~~~~~g-~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~i~-----  300 (461)
                      +..       ....++....-+...++....+...+ ++..+.+++.+.+......+.-+++|++..++.+..++     
T Consensus       279 ~~t~k~d~~~l~k~~~el~vllltGDeSMq~L~~~p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~  358 (604)
T KOG4500|consen  279 DFTKKTDMLNLFKRIAELDVLLLTGDESMQKLHADPQFLDFLESWFRSDDSNLITMGSLAIGNFARRDDICIQLVQKDFL  358 (604)
T ss_pred             cccchHHHHHHHHhhhhHhhhhhcCchHHHHHhcCcHHHHHHHHHhcCCchhHHHHHHHHHHhhhccchHHHHHHHHHHH
Confidence            221       22234444444444456666666665 88999999999999999999999999999999988887     


Q ss_pred             HHHHHHhcc-----CCHHHHHHHHHHHHHhhCCCCchhHHhhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCChh-hHH
Q 044999          301 EHLVRILRE-----GDNEANAAAADVLWDLAGYKHSVPVIRNSGAIPILVNLLRGENDEVREKVSGAIAQLSYNEA-DRV  374 (461)
Q Consensus       301 ~~l~~ll~~-----~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~-~~~  374 (461)
                      +.++.++..     ++-+++.+++.+|+|+.....++..+...|..+.+...++...|.++..-..+++.+-...+ ...
T Consensus       359 nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv~nka~~~~aGvteaIL~~lk~~~ppv~fkllgTlrM~~d~qe~~a~  438 (604)
T KOG4500|consen  359 NKLISCLMQEKDVDGNVERQHACLSALRNLMIPVSNKAHFAPAGVTEAILLQLKLASPPVTFKLLGTLRMIRDSQEYIAC  438 (604)
T ss_pred             HHHHHHHHHhcCCCccchhHHHHHHHHHhccccCCchhhccccchHHHHHHHHHhcCCcchHHHHHHHHHHHhchHHHHH
Confidence            666666632     35678889999999999998999999999999999999999989999888888877765322 333


Q ss_pred             HHHhC-CChHHHHHhccCCC-HHHHHHHHHHHHHhcCCCcchHHHHHhhCCchHHhHHHHHH
Q 044999          375 ALADA-GAVPIMIELLHDES-EELRDNAAESLINFSEDPLQHERISEAIGIPSFQSMQSRLT  434 (461)
Q Consensus       375 ~~~~~-~~i~~L~~ll~~~~-~~~~~~a~~~L~~l~~~~~~~~~l~~~~~~~~~~~l~~~l~  434 (461)
                      .+.++ ..+..|+..-++++ ..+.....+.+..+..++.....+...-..|.+..++..++
T Consensus       439 eL~kn~~l~ekLv~Wsks~D~aGv~gESnRll~~lIkHs~~kdv~~tvpksg~ik~~Vsm~t  500 (604)
T KOG4500|consen  439 ELAKNPELFEKLVDWSKSPDFAGVAGESNRLLLGLIKHSKYKDVILTVPKSGGIKEKVSMFT  500 (604)
T ss_pred             HHhcCHHHHHHHHHhhhCCccchhhhhhhHHHHHHHHhhHhhhhHhhccccccHHHHHHHHH
Confidence            33332 33566666665543 45778888888888877655444443333344555555443

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells

Probab=99.84  E-value=1.2e-16  Score=154.60  Aligned_cols=389  Identities=17%  Similarity=0.157  Sum_probs=300.1

Q ss_pred             HHHHhhccCCCCCCCcHHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHhcCCCCCHHHHHHHHHHHHHHhccChhh
Q 044999           52 ILARLLGENNFSGNLTRSIQQAAAYCLKQIASQADGALATEIGQSGVINSVLRLFPQSDDSFRTVLVKCLRVFVTFGNEN  131 (461)
Q Consensus        52 ~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~  131 (461)
                      .+...|+.    .  +.+....++.+|..+..  .......  ..+..+.|.+.|.++++.++..++..+.+++.++...
T Consensus        42 ~lf~~L~~----~--~~e~v~~~~~iL~~~l~--~~~~~~l--~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~  111 (503)
T PF10508_consen   42 VLFDCLNT----S--NREQVELICDILKRLLS--ALSPDSL--LPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGA  111 (503)
T ss_pred             HHHHHHhh----c--ChHHHHHHHHHHHHHHh--ccCHHHH--HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHH
Confidence            37777875    3  23344447788888887  3333222  5567789999999999999999999999998877666


Q ss_pred             HHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHhhCChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCc
Q 044999          132 RVIVARNGGLEIVIDLLNSCNDGTRRYLLEILSALALLREVRRVLICLGGLRYLVEAVSFGSMVSRERACQAIGLLAVTG  211 (461)
Q Consensus       132 ~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~  211 (461)
                      ...+.+.+.++.++..+.+++..+...|..+|.+++.++.....+++.+.+..|..++...++.+|..++.++.+++...
T Consensus       112 ~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S  191 (503)
T PF10508_consen  112 AQLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHS  191 (503)
T ss_pred             HHHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcC
Confidence            77888899999999999999999999999999999988888888889889999999998888899999999999999888


Q ss_pred             hh-HHHHHhcCChHHHHHhcccCCHHHHHHHHHHHHHHhcCccchhhhhhcCCHHHHHHHhCCC--Ch---h-HHHHHHH
Q 044999          212 RA-RRLLVELGVIPGLVELFHIGDWTTKLVAGNTLGVVAAHVEYITPVAEAGAIPLYAELLQGP--DS---T-GKEISED  284 (461)
Q Consensus       212 ~~-~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~ll~~~--~~---~-~~~~a~~  284 (461)
                      +. ...+.+.|+++.++..+.++|.-++..++..|..++..+.+...+.+.|+++.|..++.+.  ++   . .......
T Consensus       192 ~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~  271 (503)
T PF10508_consen  192 PEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAETPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMK  271 (503)
T ss_pred             HHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHH
Confidence            77 7888889999999999999999999999999999999999999999999999999999755  33   1 1222335


Q ss_pred             HHHHhccC-cccHHH----HHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCchhHH-hhcC-C----HHHHHHhhcCCCH
Q 044999          285 VFCILAVS-EANANA----IAEHLVRILREGDNEANAAAADVLWDLAGYKHSVPVI-RNSG-A----IPILVNLLRGEND  353 (461)
Q Consensus       285 ~L~~l~~~-~~~~~~----i~~~l~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~l-~~~g-~----i~~L~~ll~~~~~  353 (461)
                      ..++++.. +.....    +...+.+++.+.++..+..|..+++.++...+++..+ ...| .    +...-....++..
T Consensus       272 f~g~la~~~~~~v~~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~  351 (503)
T PF10508_consen  272 FFGNLARVSPQEVLELYPAFLERLFSMLESQDPTIREVAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDAIKSGST  351 (503)
T ss_pred             HHHHHHhcChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHHHhcCCch
Confidence            66777664 222111    1166667778899999999999999999998888888 4433 3    4444555567788


Q ss_pred             HHHHHHHHHHHHhcC--Chhh--------HHHHH--hCCChH-HHHHhccCCCHHHHHHHHHHHHHhcCCCcchHHHHHh
Q 044999          354 EVREKVSGAIAQLSY--NEAD--------RVALA--DAGAVP-IMIELLHDESEELRDNAAESLINFSEDPLQHERISEA  420 (461)
Q Consensus       354 ~v~~~a~~~L~~l~~--~~~~--------~~~~~--~~~~i~-~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~  420 (461)
                      +++..++.++.++-.  .+..        +..+.  ..+... .+..+++.+-|++|..+...|..++..+-+.+.+.. 
T Consensus       352 ~lk~r~l~al~~il~~~~~~~~~~i~~~~~~w~~~~~~~~~~~~l~~~~~qPF~elr~a~~~~l~~l~~~~Wg~~~i~~-  430 (503)
T PF10508_consen  352 ELKLRALHALASILTSGTDRQDNDILSITESWYESLSGSPLSNLLMSLLKQPFPELRCAAYRLLQALAAQPWGQREICS-  430 (503)
T ss_pred             HHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhcCCchHHHHHHHhcCCchHHHHHHHHHHHHHhcCHHHHHHHHh-
Confidence            999999999999944  2211        11111  223344 677788888899999999999999999887767654 


Q ss_pred             hCCchHHhHHHHHHHhhhchhHHHHHHHHHhHhhhc
Q 044999          421 IGIPSFQSMQSRLTRIRASDDLMARSMRRMSIEQLT  456 (461)
Q Consensus       421 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~  456 (461)
                       .-|.+..++++-.   + .+...++..-..++.+.
T Consensus       431 -~~gfie~lldr~~---E-~~K~~ke~K~~ii~~l~  461 (503)
T PF10508_consen  431 -SPGFIEYLLDRST---E-TTKEGKEAKYDIIKALA  461 (503)
T ss_pred             -CccHHhhhcCCCC---C-CCHHHHHHHHHHHHHHH
Confidence             4445565665332   1 24456666555555554

26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding

>KOG4199 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.82  E-value=5.8e-17  Score=138.95  Aligned_cols=338  Identities=15%  Similarity=0.190  Sum_probs=269.4

Q ss_pred             HHHHHHHHHhcCC--chhHHHHHhcCCHHHHHh---cCCCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHh
Q 044999           74 AAYCLKQIASQAD--GALATEIGQSGVINSVLR---LFPQSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLL  148 (461)
Q Consensus        74 a~~~L~~l~~~~~--~~~~~~~~~~~~l~~L~~---ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll  148 (461)
                      ....|.+++..-.  ...+..-...|..+.++.   +-.+++..+...+..++..+...    +..+.+..++..++++|
T Consensus        79 ~s~ll~~l~d~ck~~~A~r~la~~~ga~~~~it~~~la~~~~~~~l~ksL~al~~lt~~----qpdl~da~g~~vvv~lL  154 (461)
T KOG4199|consen   79 TTELLEQLADECKKSLAHRVLAGKNGAHDALITLLELAESPNESVLKKSLEAINSLTHK----QPDLFDAEAMAVVLKLL  154 (461)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHhccCCCcchhhhHHHHhhCCchhHHHHHHHHHHHhhcC----CcchhccccHHHHHHHH
Confidence            3455555553201  222222334455555543   33466777777777777777743    46678888999999988


Q ss_pred             cC--CChHHHHHHHHHHHHhh-CChHHHHHHHhcCCHHHHHHHHcCC-CHHHHHHHHHHHHHhhcCchh----------H
Q 044999          149 NS--CNDGTRRYLLEILSALA-LLREVRRVLICLGGLRYLVEAVSFG-SMVSRERACQAIGLLAVTGRA----------R  214 (461)
Q Consensus       149 ~~--~~~~~~~~a~~~L~~l~-~~~~~~~~~~~~~~l~~l~~~l~~~-~~~~~~~a~~~L~~l~~~~~~----------~  214 (461)
                      ..  .+.++....+..+..-| .++.+|+.+++.++++.+...+... ...+.+.++++++-+...++.          .
T Consensus       155 ~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~il~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hA  234 (461)
T KOG4199|consen  155 ALKVESEEVTLLTLQWLQKACIMHEVNRQLFMELKILELILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHA  234 (461)
T ss_pred             hcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHH
Confidence            54  45678888888888888 8899999999999999999888665 336788889999988776643          3


Q ss_pred             HHHHhcCChHHHHHhcc-cCCHHHHHHHHHHHHHHhcCccchhhhhhcCCHHHHHHHhCCC-Chh---HHHHHHHHHHHh
Q 044999          215 RLLVELGVIPGLVELFH-IGDWTTKLVAGNTLGVVAAHVEYITPVAEAGAIPLYAELLQGP-DST---GKEISEDVFCIL  289 (461)
Q Consensus       215 ~~~~~~~~i~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~ll~~~-~~~---~~~~a~~~L~~l  289 (461)
                      +.+...|++..|++.++ .-+|.+....+.+|..|+..++.+..+.+.|++..+++++.+. +..   ..+.++..|..+
T Consensus       235 r~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAVr~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLral  314 (461)
T KOG4199|consen  235 RTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALAVRDEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRAL  314 (461)
T ss_pred             HHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHH
Confidence            55777888999999998 4468888999999999999999999999999999999999875 333   456788888899


Q ss_pred             ccCcccHHHHH-----HHHHHHhc--cCCHHHHHHHHHHHHHhh-CCCCchhHHhhcCCHHHHHHhhcCC--CHHHHHHH
Q 044999          290 AVSEANANAIA-----EHLVRILR--EGDNEANAAAADVLWDLA-GYKHSVPVIRNSGAIPILVNLLRGE--NDEVREKV  359 (461)
Q Consensus       290 ~~~~~~~~~i~-----~~l~~ll~--~~~~~~~~~a~~~L~~l~-~~~~~~~~l~~~g~i~~L~~ll~~~--~~~v~~~a  359 (461)
                      +.+++.+..++     +.++.++.  +++|.+.+.++.++.-++ +.|++...+++.|+-...++.++..  ...+++++
T Consensus       315 AG~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrna  394 (461)
T KOG4199|consen  315 AGSDSVKSTIVEKGGLDKIITLALRHSDDPLVIQEVMAIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNA  394 (461)
T ss_pred             hCCCchHHHHHHhcChHHHHHHHHHcCCChHHHHHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHH
Confidence            99999999998     77777763  558999999999999999 7899999999999999999999854  35699999


Q ss_pred             HHHHHHhcC-ChhhHHHHHhCCChHHHHHhccCCCHHHHHHHHHHHHHhcCCCcchHH
Q 044999          360 SGAIAQLSY-NEADRVALADAGAVPIMIELLHDESEELRDNAAESLINFSEDPLQHER  416 (461)
Q Consensus       360 ~~~L~~l~~-~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~  416 (461)
                      ++.++|+.. +.+++..+...| ++.|+...+..++.+...+..+|..|..+-..++.
T Consensus       395 c~~IRNiv~rs~~~~~~~l~~G-iE~Li~~A~~~h~tce~~akaALRDLGc~v~lre~  451 (461)
T KOG4199|consen  395 CNMIRNIVVRSAENRTILLANG-IEKLIRTAKANHETCEAAAKAALRDLGCDVYLREE  451 (461)
T ss_pred             HHHHHHHHHhhhhccchHHhcc-HHHHHHHHHhcCccHHHHHHHHHHhcCcchhhHHH
Confidence            999999999 778777777765 99999999999999999999999999887766643

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells

Probab=99.82  E-value=6.7e-16  Score=149.48  Aligned_cols=389  Identities=15%  Similarity=0.167  Sum_probs=293.1

Q ss_pred             HHHHhhcCCHHHHHHHHHHHHhhc-CCCchhHHHhhHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHhcCCchhHHHH
Q 044999           15 FEQAVVSGSEALQVKALTKLARVS-KFAPQDILAATIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQADGALATEI   93 (461)
Q Consensus        15 l~~ll~~~~~~~~~~a~~~l~~la-~~~~~~~l~~~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~   93 (461)
                      ++..+++.+.+....++.+|..+- .......+.+..+.+...|.+      +++.++..++..+.++... +......+
T Consensus        43 lf~~L~~~~~e~v~~~~~iL~~~l~~~~~~~l~~~~~~~L~~gL~h------~~~~Vr~l~l~~l~~~~~~-~~~~~~~~  115 (503)
T PF10508_consen   43 LFDCLNTSNREQVELICDILKRLLSALSPDSLLPQYQPFLQRGLTH------PSPKVRRLALKQLGRIARH-SEGAAQLL  115 (503)
T ss_pred             HHHHHhhcChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcC------CCHHHHHHHHHHHHHHhcC-CHHHHHHh
Confidence            566777777777788888888888 555555555588889999987      5567888899999999985 55567777


Q ss_pred             HhcCCHHHHHhcCCCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHhh-CChHH
Q 044999           94 GQSGVINSVLRLFPQSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLNSCNDGTRRYLLEILSALA-LLREV  172 (461)
Q Consensus        94 ~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~-~~~~~  172 (461)
                      .+.+.++.++.++.+++..+...++..+..++... .....+...+....|..++..++..+|..++.++.+++ .+++.
T Consensus       116 ~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~-~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~  194 (503)
T PF10508_consen  116 VDNELLPLIIQCLRDPDLSVAKAAIKALKKLASHP-EGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEA  194 (503)
T ss_pred             cCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCc-hhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHH
Confidence            88999999999999999999999999999999755 55566778888999999999888899999999999999 77888


Q ss_pred             HHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhcccC--CH---HH-HHHHHHHHH
Q 044999          173 RRVLICLGGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRARRLLVELGVIPGLVELFHIG--DW---TT-KLVAGNTLG  246 (461)
Q Consensus       173 ~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~--~~---~~-~~~a~~~L~  246 (461)
                      ...+.+.|.++.++..+.++|.-++..++.++..++..+.....+.+.|+++.|..++.+.  ++   .+ .-......+
T Consensus       195 ~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g  274 (503)
T PF10508_consen  195 AEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAETPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFG  274 (503)
T ss_pred             HHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHH
Confidence            8888899999999999999888999999999999999888899999999999999999843  22   11 123345667


Q ss_pred             HHhcCccchhhhhhcCCHHHHHHHhCCCChhHHHHHHHHHHHhccCcccHHHH-H----------HHHHHHhccCCHHHH
Q 044999          247 VVAAHVEYITPVAEAGAIPLYAELLQGPDSTGKEISEDVFCILAVSEANANAI-A----------EHLVRILREGDNEAN  315 (461)
Q Consensus       247 ~l~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~i-~----------~~l~~ll~~~~~~~~  315 (461)
                      +++...+..-.-.-..++..+.+++.+.++..+..|..+++.++...+.+..+ .          ..+.....++..+++
T Consensus       275 ~la~~~~~~v~~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk  354 (503)
T PF10508_consen  275 NLARVSPQEVLELYPAFLERLFSMLESQDPTIREVAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELK  354 (503)
T ss_pred             HHHhcChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHHHhcCCchHHH
Confidence            77764111111111244566777788889999999999999999988888877 3          333334456678999


Q ss_pred             HHHHHHHHHhhCCCC--c-------hhHHh---hcCCHH-HHHHhhcCCCHHHHHHHHHHHHHhcCChhhHHHHHhC-CC
Q 044999          316 AAAADVLWDLAGYKH--S-------VPVIR---NSGAIP-ILVNLLRGENDEVREKVSGAIAQLSYNEADRVALADA-GA  381 (461)
Q Consensus       316 ~~a~~~L~~l~~~~~--~-------~~~l~---~~g~i~-~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~  381 (461)
                      ..++.++.++-..+.  .       .+.+.   ..+... .++.+++.+=+++|..+...|..++..+-....+... |.
T Consensus       355 ~r~l~al~~il~~~~~~~~~~i~~~~~~w~~~~~~~~~~~~l~~~~~qPF~elr~a~~~~l~~l~~~~Wg~~~i~~~~gf  434 (503)
T PF10508_consen  355 LRALHALASILTSGTDRQDNDILSITESWYESLSGSPLSNLLMSLLKQPFPELRCAAYRLLQALAAQPWGQREICSSPGF  434 (503)
T ss_pred             HHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhcCCchHHHHHHHhcCCchHHHHHHHHHHHHHhcCHHHHHHHHhCccH
Confidence            999999999953321  1       11111   223344 6777887776999999999999999977666666654 44


Q ss_pred             hHHHHHhccCCCHHHHHHHHHHHHHhcCCC
Q 044999          382 VPIMIELLHDESEELRDNAAESLINFSEDP  411 (461)
Q Consensus       382 i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~  411 (461)
                      ++.|+.--.+.+.+.++.=-.++..|...+
T Consensus       435 ie~lldr~~E~~K~~ke~K~~ii~~l~~~~  464 (503)
T PF10508_consen  435 IEYLLDRSTETTKEGKEAKYDIIKALAKSS  464 (503)
T ss_pred             HhhhcCCCCCCCHHHHHHHHHHHHHHHhcc
Confidence            555554444445554444333444444333

26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding

>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]

Probab=99.81  E-value=1.6e-17  Score=146.81  Aligned_cols=367  Identities=15%  Similarity=0.103  Sum_probs=286.3

Q ss_pred             HHHHHHHHHHHHHhcCCchhHHHHH----hcCCHHHHHhcCCCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHH
Q 044999           70 IQQAAAYCLKQIASQADGALATEIG----QSGVINSVLRLFPQSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVI  145 (461)
Q Consensus        70 ~~~~a~~~L~~l~~~~~~~~~~~~~----~~~~l~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~  145 (461)
                      +......++...+.  ++..+..+.    ..+.++.|.+..++++.++..++.+++.|++..+.++|..+.+.||-..++
T Consensus        58 v~~~qssC~A~~sk--~ev~r~~F~~~~I~a~~le~Lrq~psS~d~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaqivi  135 (604)
T KOG4500|consen   58 VYLFQSSCLADRSK--NEVERSLFRNYCIDAEALELLRQTPSSPDTEVHEQCFRALGNICYDNNENRAAFFNLGGAQIVI  135 (604)
T ss_pred             hhhhhHHHHHHHhh--hHHHHHHHHHHhhHHHHHHHHHhCCCCCcccHHHHHHHHHhhhhccCchhHHHHHhcCCceehH
Confidence            44456677887776  555444443    456788889999999999999999999999999999999999999988888


Q ss_pred             HHhcCC----C---hHHHHHHHHHHHHhh-CChHHHHHHHhcCCHHHHHHHHc--CCCHHHHHHHHHHHHHhhcCchh--
Q 044999          146 DLLNSC----N---DGTRRYLLEILSALA-LLREVRRVLICLGGLRYLVEAVS--FGSMVSRERACQAIGLLAVTGRA--  213 (461)
Q Consensus       146 ~ll~~~----~---~~~~~~a~~~L~~l~-~~~~~~~~~~~~~~l~~l~~~l~--~~~~~~~~~a~~~L~~l~~~~~~--  213 (461)
                      +.|+..    +   ...-..++..|.|.. .+++.+.++.+.|++++|...+.  ..+....+..+....|+.+.-..  
T Consensus       136 d~L~~~cs~d~~ane~~~~v~~g~l~Ny~l~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e~~  215 (604)
T KOG4500|consen  136 DVLKPYCSKDNPANEEYSAVAFGVLHNYILDSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCEML  215 (604)
T ss_pred             hhhccccccCCccHHHHHHHHHHHHHHhhCCcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHHHhh
Confidence            877642    2   256677788999988 78888999999999999988775  34777778877777777654433  


Q ss_pred             HHHHHhcCChHHHHHhccc-CCHHHHHHHHHHHHHHhcCccchhhhhhcCCHHHHHHHhCC-CC-------hhHHHHHHH
Q 044999          214 RRLLVELGVIPGLVELFHI-GDWTTKLVAGNTLGVVAAHVEYITPVAEAGAIPLYAELLQG-PD-------STGKEISED  284 (461)
Q Consensus       214 ~~~~~~~~~i~~L~~ll~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~ll~~-~~-------~~~~~~a~~  284 (461)
                      .....++.....+++++.+ -.++..+.....+...+.++..+-.+++.|.+..++++++. .+       ......++.
T Consensus       216 ~~~~~d~sl~~~l~~ll~~~v~~d~~eM~feila~~aend~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~e  295 (604)
T KOG4500|consen  216 YPFCKDCSLVFMLLQLLPSMVREDIDEMIFEILAKAAENDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAE  295 (604)
T ss_pred             hhhhccchHHHHHHHHHHHhhccchhhHHHHHHHHHhcCcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhh
Confidence            5555666777778888874 46778888899999999999999999999999999998865 21       112333444


Q ss_pred             HHHHhccCcccHHHHH------HHHHHHhccCCHHHHHHHHHHHHHhhCCCCchhHHhhcCCHHHHHHhhcC-----CCH
Q 044999          285 VFCILAVSEANANAIA------EHLVRILREGDNEANAAAADVLWDLAGYKHSVPVIRNSGAIPILVNLLRG-----END  353 (461)
Q Consensus       285 ~L~~l~~~~~~~~~i~------~~l~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~ll~~-----~~~  353 (461)
                      ...-+...+++-..+.      +.+..++++++...+..+.-+++|+++.++++-.+++.|++..|+..+..     ++.
T Consensus       296 l~vllltGDeSMq~L~~~p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV  375 (604)
T KOG4500|consen  296 LDVLLLTGDESMQKLHADPQFLDFLESWFRSDDSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDGNV  375 (604)
T ss_pred             HhhhhhcCchHHHHHhcCcHHHHHHHHHhcCCchhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCccc
Confidence            4444445555433333      77888899999999999999999999999999999999999999999853     566


Q ss_pred             HHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhccCCCHHHHHHHHHHHHHhcCCCcchHHHHHhhCCchHHhHHHHH
Q 044999          354 EVREKVSGAIAQLSYNEADRVALADAGAVPIMIELLHDESEELRDNAAESLINFSEDPLQHERISEAIGIPSFQSMQSRL  433 (461)
Q Consensus       354 ~v~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~~~~~~~~~l~~~l  433 (461)
                      +++..++.+|+|+.....++..+..+|..+.++..++...|.++..-.+.+..+....+.  ...+.+..   ..+..++
T Consensus       376 ~~qhA~lsALRnl~IPv~nka~~~~aGvteaIL~~lk~~~ppv~fkllgTlrM~~d~qe~--~a~eL~kn---~~l~ekL  450 (604)
T KOG4500|consen  376 ERQHACLSALRNLMIPVSNKAHFAPAGVTEAILLQLKLASPPVTFKLLGTLRMIRDSQEY--IACELAKN---PELFEKL  450 (604)
T ss_pred             hhHHHHHHHHHhccccCCchhhccccchHHHHHHHHHhcCCcchHHHHHHHHHHHhchHH--HHHHHhcC---HHHHHHH
Confidence            788899999999999888999999999999999999999999999888888877655431  22333333   3456777


Q ss_pred             HHhhhchhHH
Q 044999          434 TRIRASDDLM  443 (461)
Q Consensus       434 ~~~~~~~~~~  443 (461)
                      .+|+.+.|+.
T Consensus       451 v~Wsks~D~a  460 (604)
T KOG4500|consen  451 VDWSKSPDFA  460 (604)
T ss_pred             HHhhhCCccc
Confidence            8888875544

>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]

Probab=99.81  E-value=6.2e-18  Score=168.29  Aligned_cols=338  Identities=16%  Similarity=0.195  Sum_probs=263.1

Q ss_pred             HHHHHHHhhc-CCCchhHHHh--hHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHhcCCch--hHHHHHhcCCHHHHH
Q 044999           29 KALTKLARVS-KFAPQDILAA--TIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQADGA--LATEIGQSGVINSVL  103 (461)
Q Consensus        29 ~a~~~l~~la-~~~~~~~l~~--~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~--~~~~~~~~~~l~~L~  103 (461)
                      .-.+-|..++ +++....++.  +++.|+++|..   +++++.+..+.|-.+|.++....+++  .+..+.-...+..+.
T Consensus       213 e~ar~fLemSss~esCaamR~SgCLpLLvQilH~---~d~~~kear~~A~aALHNIVhSqPD~kr~RRE~kvL~lLeQIr  289 (2195)
T KOG2122|consen  213 EMARTFLEMSSSPESCAAMRRSGCLPLLVQILHG---PDDEDKEARKRASAALHNIVHSQPDEKRGRREKKVLHLLEQIR  289 (2195)
T ss_pred             HHHHHHHHhccCchhhHHHHhccchHHHHHHhhC---CchhhHHHHHHHHHHHHHHhhcCcchhhhHHHHHHHHHHHHHH
Confidence            4556677777 8888888887  99999999985   24435566677999999999863332  333332223333333


Q ss_pred             hcC-------CCCC------HH-HHH-HHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhcCC------------ChHHH
Q 044999          104 RLF-------PQSD------DS-FRT-VLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLNSC------------NDGTR  156 (461)
Q Consensus       104 ~ll-------~~~~------~~-~~~-~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~------------~~~~~  156 (461)
                      .++       ....      +. -+. .|...|.+++ .+++.|..+.+.|++..+-+|+.-.            ...+|
T Consensus       290 aYC~~~~~~lqar~~~~apa~~~H~lcaA~~~lMK~S-FDEEhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLR  368 (2195)
T KOG2122|consen  290 AYCETCWTWLQARGPAIAPASDEHQLCAALCTLMKLS-FDEEHRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNALR  368 (2195)
T ss_pred             HHHHHHHHHHHhcCCCCCCcccchhhHHHHHHHHHhh-ccHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHH
Confidence            222       2111      11 133 3444444666 6779999999999999999977421            23799


Q ss_pred             HHHHHHHHHhh-CChHHHHHHHh-cCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCchh--HHHHHhcCChHHHHHh-cc
Q 044999          157 RYLLEILSALA-LLREVRRVLIC-LGGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRA--RRLLVELGVIPGLVEL-FH  231 (461)
Q Consensus       157 ~~a~~~L~~l~-~~~~~~~~~~~-~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~--~~~~~~~~~i~~L~~l-l~  231 (461)
                      .+|..+|.||. .+..++..+.. .|+++.+|..|.+..+++..-.+.+|+||+...+.  ++.+.+.|-+..|... ++
T Consensus       369 rYa~MALTNLTFGDv~NKa~LCs~rgfMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~  448 (2195)
T KOG2122|consen  369 RYAGMALTNLTFGDVANKATLCSQRGFMEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALR  448 (2195)
T ss_pred             HHHHHHhhccccccccchhhhhhhhhHHHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHH
Confidence            99999999999 56666777764 68999999999999999999999999999998886  7778888988888874 44


Q ss_pred             cCCHHHHHHHHHHHHHHhcC-ccchhhhhhc-CCHHHHHHHhCCC----ChhHHHHHHHHHHHhcc----CcccHHHHH-
Q 044999          232 IGDWTTKLVAGNTLGVVAAH-VEYITPVAEA-GAIPLYAELLQGP----DSTGKEISEDVFCILAV----SEANANAIA-  300 (461)
Q Consensus       232 ~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~-g~i~~L~~ll~~~----~~~~~~~a~~~L~~l~~----~~~~~~~i~-  300 (461)
                      ..........+.+||||+.+ .+|+..|... |++..|+.+|...    .-.+.+.+-++|.|.+.    .++.++.+. 
T Consensus       449 ~~kEsTLKavLSALWNLSAHcteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~  528 (2195)
T KOG2122|consen  449 NKKESTLKAVLSALWNLSAHCTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRR  528 (2195)
T ss_pred             hcccchHHHHHHHHhhhhhcccccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHH
Confidence            55667888899999999999 8888888765 8999999999765    35688899999999854    344444443 


Q ss_pred             ----HHHHHHhccCCHHHHHHHHHHHHHhh-CCCCchhHHhhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCCh
Q 044999          301 ----EHLVRILREGDNEANAAAADVLWDLA-GYKHSVPVIRNSGAIPILVNLLRGENDEVREKVSGAIAQLSYNE  370 (461)
Q Consensus       301 ----~~l~~ll~~~~~~~~~~a~~~L~~l~-~~~~~~~~l~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~  370 (461)
                          ..|++.|++.+-.+.-++|++||||+ .+++.++.+.+.|.++.|..++++++..+-..++.+|.||....
T Consensus       529 ~NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR~p~DQq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln~R  603 (2195)
T KOG2122|consen  529 HNCLQTLLQHLKSHSLTIVSNACGTLWNLSARSPEDQQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLNFR  603 (2195)
T ss_pred             hhHHHHHHHHhhhcceEEeecchhhhhhhhcCCHHHHHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhcCC
Confidence                78888889999999999999999999 67899999999999999999999999999999999999998844

>KOG4199 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.80  E-value=3.4e-16  Score=134.31  Aligned_cols=313  Identities=16%  Similarity=0.168  Sum_probs=253.8

Q ss_pred             HhhcCCHHHHHHHHHHHHhhcCCCchhHHHhhHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHhcCCchhHHHHHhcC
Q 044999           18 AVVSGSEALQVKALTKLARVSKFAPQDILAATIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQADGALATEIGQSG   97 (461)
Q Consensus        18 ll~~~~~~~~~~a~~~l~~la~~~~~~~l~~~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~   97 (461)
                      +-++++..+-.++..+|..+.+.+++-.=.+++..++.+|..    ..++.++.......+..-|.. ++.++..+.+.+
T Consensus       115 la~~~~~~~l~ksL~al~~lt~~qpdl~da~g~~vvv~lL~~----~~~~~dlt~~~~~~v~~Ac~~-hE~nrQ~~m~~~  189 (461)
T KOG4199|consen  115 LAESPNESVLKKSLEAINSLTHKQPDLFDAEAMAVVLKLLAL----KVESEEVTLLTLQWLQKACIM-HEVNRQLFMELK  189 (461)
T ss_pred             HhhCCchhHHHHHHHHHHHhhcCCcchhccccHHHHHHHHhc----ccchHHHHHHHHHHHHHHHHH-hHHHHHHHHHhh
Confidence            455677788888888888888554442223388888899886    555566777788888888886 889999999999


Q ss_pred             CHHHHHhcCCC-CCHHHHHHHHHHHHHHhccC---------hhhHHHHHHcCCHHHHHHHhcCC-ChHHHHHHHHHHHHh
Q 044999           98 VINSVLRLFPQ-SDDSFRTVLVKCLRVFVTFG---------NENRVIVARNGGLEIVIDLLNSC-NDGTRRYLLEILSAL  166 (461)
Q Consensus        98 ~l~~L~~ll~~-~~~~~~~~~~~~l~~l~~~~---------~~~~~~~~~~g~i~~L~~ll~~~-~~~~~~~a~~~L~~l  166 (461)
                      .++.+.+.+.. +...+.+...++++-+..++         ....+.|...|++..|++.+... +|++...++.+|..+
T Consensus       190 il~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~l  269 (461)
T KOG4199|consen  190 ILELILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKAL  269 (461)
T ss_pred             HHHHHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHH
Confidence            99999976664 44456777777888666543         12356777888999999988754 688999999999999


Q ss_pred             hCChHHHHHHHhcCCHHHHHHHHcCCCH----HHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhcc--cCCHHHHHH
Q 044999          167 ALLREVRRVLICLGGLRYLVEAVSFGSM----VSRERACQAIGLLAVTGRARRLLVELGVIPGLVELFH--IGDWTTKLV  240 (461)
Q Consensus       167 ~~~~~~~~~~~~~~~l~~l~~~l~~~~~----~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~--~~~~~~~~~  240 (461)
                      +...+..+.+.+.||+..+++++.+.+.    +....++..|+.++.++..+..+++.|+.+.++.++.  +.+|.+.+.
T Consensus       270 AVr~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~  349 (461)
T KOG4199|consen  270 AVRDEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGSDSVKSTIVEKGGLDKIITLALRHSDDPLVIQE  349 (461)
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCCCchHHHHHHhcChHHHHHHHHHcCCChHHHHH
Confidence            9999999999999999999999988533    3557889999999999999999999999999999886  668889999


Q ss_pred             HHHHHHHHhcC-ccchhhhhhcCCHHHHHHHhCCC--ChhHHHHHHHHHHHhcc-CcccHHHHH----HHHHHHhccCCH
Q 044999          241 AGNTLGVVAAH-VEYITPVAEAGAIPLYAELLQGP--DSTGKEISEDVFCILAV-SEANANAIA----EHLVRILREGDN  312 (461)
Q Consensus       241 a~~~L~~l~~~-~~~~~~~~~~g~i~~L~~ll~~~--~~~~~~~a~~~L~~l~~-~~~~~~~i~----~~l~~ll~~~~~  312 (461)
                      ++.++.-|+.- ++....+++.|+-...++.++..  ...++++++..+.|++. ..+++..+.    +.|+..-+..++
T Consensus       350 ~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~~~~~~~l~~GiE~Li~~A~~~h~  429 (461)
T KOG4199|consen  350 VMAIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSAENRTILLANGIEKLIRTAKANHE  429 (461)
T ss_pred             HHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhhccchHHhccHHHHHHHHHhcCc
Confidence            99999999877 88899999999999999998765  46799999999999954 444555554    899999999999


Q ss_pred             HHHHHHHHHHHHhhCCCCchhHH
Q 044999          313 EANAAAADVLWDLAGYKHSVPVI  335 (461)
Q Consensus       313 ~~~~~a~~~L~~l~~~~~~~~~l  335 (461)
                      .+...|-.+|+.|-.+..+++..
T Consensus       430 tce~~akaALRDLGc~v~lre~w  452 (461)
T KOG4199|consen  430 TCEAAAKAALRDLGCDVYLREEW  452 (461)
T ss_pred             cHHHHHHHHHHhcCcchhhHHHh
Confidence            99999999999998765555543

>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.75  E-value=3.8e-15  Score=133.77  Aligned_cols=347  Identities=17%  Similarity=0.202  Sum_probs=280.0

Q ss_pred             HHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHhcCCCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhc
Q 044999           70 IQQAAAYCLKQIASQADGALATEIGQSGVINSVLRLFPQSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLN  149 (461)
Q Consensus        70 ~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll~  149 (461)
                      ..+.|...|.++++  +-..-..++..+.+..|++.|...+.+........+..++-.+ +++..+.+.|.+..|.++..
T Consensus       279 LLrva~ylLlNlAe--d~~~ElKMrrkniV~mLVKaLdr~n~~Ll~lv~~FLkKLSIf~-eNK~~M~~~~iveKL~klfp  355 (791)
T KOG1222|consen  279 LLRVAVYLLLNLAE--DISVELKMRRKNIVAMLVKALDRSNSSLLTLVIKFLKKLSIFD-ENKIVMEQNGIVEKLLKLFP  355 (791)
T ss_pred             HHHHHHHHHHHHhh--hhhHHHHHHHHhHHHHHHHHHcccchHHHHHHHHHHHHhhhhc-cchHHHHhccHHHHHHHhcC
Confidence            33448999999999  7777788899999999999999999887777888888888555 88999999999999999999


Q ss_pred             CCChHHHHHHHHHHHHhhCChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHh
Q 044999          150 SCNDGTRRYLLEILSALALLREVRRVLICLGGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRARRLLVELGVIPGLVEL  229 (461)
Q Consensus       150 ~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~l  229 (461)
                      ..+++++...+..+.|++.+...+..++..|.+|.+..++.+++  -...|+..+..++.+++.+..+....+++.+.+.
T Consensus       356 ~~h~dL~~~tl~LlfNlSFD~glr~KMv~~GllP~l~~ll~~d~--~~~iA~~~lYh~S~dD~~K~MfayTdci~~lmk~  433 (791)
T KOG1222|consen  356 IQHPDLRKATLMLLFNLSFDSGLRPKMVNGGLLPHLASLLDSDT--KHGIALNMLYHLSCDDDAKAMFAYTDCIKLLMKD  433 (791)
T ss_pred             CCCHHHHHHHHHHhhhccccccccHHHhhccchHHHHHHhCCcc--cchhhhhhhhhhccCcHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999998764  2456888899999998889999999999999986


Q ss_pred             cccC-CHHHHHHHHHHHHHHhcCccchhhhhhcCCHHHHHHH-hCCCChhHHHHHHHHHHHhccCcccHH-HHH---HHH
Q 044999          230 FHIG-DWTTKLVAGNTLGVVAAHVEYITPVAEAGAIPLYAEL-LQGPDSTGKEISEDVFCILAVSEANAN-AIA---EHL  303 (461)
Q Consensus       230 l~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~l-l~~~~~~~~~~a~~~L~~l~~~~~~~~-~i~---~~l  303 (461)
                      +-+. +.++-......-.|++.+..+.+.+.+..++..|.+. +++.++-+    ...+.|+++++..-+ .+.   ..|
T Consensus       434 v~~~~~~~vdl~lia~ciNl~lnkRNaQlvceGqgL~~LM~ra~k~~D~lL----mK~vRniSqHeg~tqn~FidyvgdL  509 (791)
T KOG1222|consen  434 VLSGTGSEVDLALIALCINLCLNKRNAQLVCEGQGLDLLMERAIKSRDLLL----MKVVRNISQHEGATQNMFIDYVGDL  509 (791)
T ss_pred             HHhcCCceecHHHHHHHHHHHhccccceEEecCcchHHHHHHHhcccchHH----HHHHHHhhhccchHHHHHHHHHHHH
Confidence            6543 4444444444456888888888888887778887775 45555543    357889999888544 444   666


Q ss_pred             HHHhccC-CHHHHHHHHHHHHHhhCC-CCchhHHhhcCCHHHHHHhhcCC--CHHHHHHHHHHHHHhcCChhhHHHHHhC
Q 044999          304 VRILREG-DNEANAAAADVLWDLAGY-KHSVPVIRNSGAIPILVNLLRGE--NDEVREKVSGAIAQLSYNEADRVALADA  379 (461)
Q Consensus       304 ~~ll~~~-~~~~~~~a~~~L~~l~~~-~~~~~~l~~~g~i~~L~~ll~~~--~~~v~~~a~~~L~~l~~~~~~~~~~~~~  379 (461)
                      ...++.. +++....++++++||... -+-...+.+...+|.+...|..+  ..+++.....+++.++.+..+...+..+
T Consensus       510 a~i~~nd~~E~F~~EClGtlanL~v~dldw~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~d~~cA~Lla~a  589 (791)
T KOG1222|consen  510 AGIAKNDNSESFGLECLGTLANLKVTDLDWAKILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMARDLDCARLLAPA  589 (791)
T ss_pred             HHHhhcCchHHHHHHHHHHHhhcccCCCCHHHHHhhccccHHHHHhhcCCccchhhhhHHHHHhhhhhhhhHHHHHhCcc
Confidence            7777655 566778899999999854 45556666788999999999865  3557778888899999999989999999


Q ss_pred             CChHHHHHhccC--CCHHHHHHHHHHHHHhcCCCcchHHHHHhhCCch
Q 044999          380 GAVPIMIELLHD--ESEELRDNAAESLINFSEDPLQHERISEAIGIPS  425 (461)
Q Consensus       380 ~~i~~L~~ll~~--~~~~~~~~a~~~L~~l~~~~~~~~~l~~~~~~~~  425 (461)
                      +.++.++++++.  .+.+.......+...+..+...+..+.+....|.
T Consensus       590 ~~i~tlieLL~a~QeDDEfV~QiiyVF~Q~l~He~tr~~miket~~~A  637 (791)
T KOG1222|consen  590 KLIDTLIELLQACQEDDEFVVQIIYVFLQFLKHELTRRLMIKETALGA  637 (791)
T ss_pred             ccHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHhhccchH
Confidence            999999999965  5777888888888888888767777766555554

>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.75  E-value=4.1e-15  Score=133.61  Aligned_cols=373  Identities=17%  Similarity=0.159  Sum_probs=293.9

Q ss_pred             CHHHHHHHHHHHHhhc-CCCchhHHHh--hHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHhcCCchhHHHHHhcCCH
Q 044999           23 SEALQVKALTKLARVS-KFAPQDILAA--TIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQADGALATEIGQSGVI   99 (461)
Q Consensus        23 ~~~~~~~a~~~l~~la-~~~~~~~l~~--~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l   99 (461)
                      .+.+-+.|...|.++| +-.....+++  ++..|++.|..    ++  .+.......+|..|+-  ..+++..+.+.|.+
T Consensus       276 QeqLLrva~ylLlNlAed~~~ElKMrrkniV~mLVKaLdr----~n--~~Ll~lv~~FLkKLSI--f~eNK~~M~~~~iv  347 (791)
T KOG1222|consen  276 QEQLLRVAVYLLLNLAEDISVELKMRRKNIVAMLVKALDR----SN--SSLLTLVIKFLKKLSI--FDENKIVMEQNGIV  347 (791)
T ss_pred             HHHHHHHHHHHHHHHhhhhhHHHHHHHHhHHHHHHHHHcc----cc--hHHHHHHHHHHHHhhh--hccchHHHHhccHH
Confidence            4455566888899999 6666667776  99999999987    33  4466668899999998  78889999999999


Q ss_pred             HHHHhcCCCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHhhCChHHHHHHHhc
Q 044999          100 NSVLRLFPQSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLNSCNDGTRRYLLEILSALALLREVRRVLICL  179 (461)
Q Consensus       100 ~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~  179 (461)
                      ++|+++.....++.+......+.+++.+. ..+..++..|.+|.+..++.+..  -...|+..+..++-+++.+..+...
T Consensus       348 eKL~klfp~~h~dL~~~tl~LlfNlSFD~-glr~KMv~~GllP~l~~ll~~d~--~~~iA~~~lYh~S~dD~~K~MfayT  424 (791)
T KOG1222|consen  348 EKLLKLFPIQHPDLRKATLMLLFNLSFDS-GLRPKMVNGGLLPHLASLLDSDT--KHGIALNMLYHLSCDDDAKAMFAYT  424 (791)
T ss_pred             HHHHHhcCCCCHHHHHHHHHHhhhccccc-cccHHHhhccchHHHHHHhCCcc--cchhhhhhhhhhccCcHHHHHHHHH
Confidence            99999999999999999999999999655 88999999999999999998765  3456889999999999999999999


Q ss_pred             CCHHHHHHHHcCC-CHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhc-ccCCHHHHHHHHHHHHHHhcCcc-chh
Q 044999          180 GGLRYLVEAVSFG-SMVSRERACQAIGLLAVTGRARRLLVELGVIPGLVELF-HIGDWTTKLVAGNTLGVVAAHVE-YIT  256 (461)
Q Consensus       180 ~~l~~l~~~l~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll-~~~~~~~~~~a~~~L~~l~~~~~-~~~  256 (461)
                      .+++.+.+.+-+. +.++-...+....|++.+..+.+.+++-.++..|++.. ++.++-.    ...++|++.++. .+.
T Consensus       425 dci~~lmk~v~~~~~~~vdl~lia~ciNl~lnkRNaQlvceGqgL~~LM~ra~k~~D~lL----mK~vRniSqHeg~tqn  500 (791)
T KOG1222|consen  425 DCIKLLMKDVLSGTGSEVDLALIALCINLCLNKRNAQLVCEGQGLDLLMERAIKSRDLLL----MKVVRNISQHEGATQN  500 (791)
T ss_pred             HHHHHHHHHHHhcCCceecHHHHHHHHHHHhccccceEEecCcchHHHHHHHhcccchHH----HHHHHHhhhccchHHH
Confidence            9999988766444 55666666666679999988888888877888887744 4444432    347899999854 555


Q ss_pred             hhhhcCCHHHHHHHhCCC-ChhHHHHHHHHHHHhccCcccHHHHH------HHHHHHhccC--CHHHHHHHHHHHHHhhC
Q 044999          257 PVAEAGAIPLYAELLQGP-DSTGKEISEDVFCILAVSEANANAIA------EHLVRILREG--DNEANAAAADVLWDLAG  327 (461)
Q Consensus       257 ~~~~~g~i~~L~~ll~~~-~~~~~~~a~~~L~~l~~~~~~~~~i~------~~l~~ll~~~--~~~~~~~a~~~L~~l~~  327 (461)
                      .+++.  +..|...++.. +.+....++++|+||...+-.-..+.      |.+-..|..+  ..+.+-..+-.++.++.
T Consensus       501 ~Fidy--vgdLa~i~~nd~~E~F~~EClGtlanL~v~dldw~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~  578 (791)
T KOG1222|consen  501 MFIDY--VGDLAGIAKNDNSESFGLECLGTLANLKVTDLDWAKILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMAR  578 (791)
T ss_pred             HHHHH--HHHHHHHhhcCchHHHHHHHHHHHhhcccCCCCHHHHHhhccccHHHHHhhcCCccchhhhhHHHHHhhhhhh
Confidence            55432  44566666544 56677789999999988766655555      6666666544  35667777778888888


Q ss_pred             CCCchhHHhhcCCHHHHHHhhcC--CCHHHHHHHHHHHHHhcCChhhHHHHHhCC-ChHHHHHhccCCCHHHHHHHHHHH
Q 044999          328 YKHSVPVIRNSGAIPILVNLLRG--ENDEVREKVSGAIAQLSYNEADRVALADAG-AVPIMIELLHDESEELRDNAAESL  404 (461)
Q Consensus       328 ~~~~~~~l~~~g~i~~L~~ll~~--~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~-~i~~L~~ll~~~~~~~~~~a~~~L  404 (461)
                      ...+...+...|.++.|+++|+.  .+++...+.+.+...+..++..+..+.+.. .-.-|+.++++.+.++|..+-.+|
T Consensus       579 d~~cA~Lla~a~~i~tlieLL~a~QeDDEfV~QiiyVF~Q~l~He~tr~~miket~~~AylIDLMHDkN~eiRkVCDn~L  658 (791)
T KOG1222|consen  579 DLDCARLLAPAKLIDTLIELLQACQEDDEFVVQIIYVFLQFLKHELTRRLMIKETALGAYLIDLMHDKNAEIRKVCDNAL  658 (791)
T ss_pred             hhHHHHHhCccccHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHhcccHHHHHHHHHHH
Confidence            88899999999999999999985  467788888888888888777777777554 456689999999999999999999


Q ss_pred             HHhcCCCc
Q 044999          405 INFSEDPL  412 (461)
Q Consensus       405 ~~l~~~~~  412 (461)
                      --++.+++
T Consensus       659 dIiae~d~  666 (791)
T KOG1222|consen  659 DIIAEHDK  666 (791)
T ss_pred             HHHHHhhH
Confidence            98887764

>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function

Probab=99.67  E-value=9.8e-15  Score=126.66  Aligned_cols=192  Identities=22%  Similarity=0.233  Sum_probs=169.9

Q ss_pred             HHhcCChHHHHHhcc-cCCHHHHHHHHHHHHHHhcCccchhhhhhcCCHHHHHHHhCCCChhHHHHHHHHHHHhccCccc
Q 044999          217 LVELGVIPGLVELFH-IGDWTTKLVAGNTLGVVAAHVEYITPVAEAGAIPLYAELLQGPDSTGKEISEDVFCILAVSEAN  295 (461)
Q Consensus       217 ~~~~~~i~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~  295 (461)
                      +.+.+-++.|+.+|+ +.++.+++.+..++++.+..+.++..+.+.|+++.+..++.++++.++..|+.+|.|++.+.++
T Consensus         8 ~l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en   87 (254)
T PF04826_consen    8 ILEAQELQKLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDEN   87 (254)
T ss_pred             CcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhh
Confidence            355667899999999 5689999999999999999999999999999999999999999999999999999999999998


Q ss_pred             HHHHH---HHHHHHhccC--CHHHHHHHHHHHHHhhCCCCchhHHhhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCCh
Q 044999          296 ANAIA---EHLVRILREG--DNEANAAAADVLWDLAGYKHSVPVIRNSGAIPILVNLLRGENDEVREKVSGAIAQLSYNE  370 (461)
Q Consensus       296 ~~~i~---~~l~~ll~~~--~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~  370 (461)
                      +..+-   +.+.+...+.  +..++..++++|.+|+..++.+..+..  .++.++.++.+++..++..++++|.||+.++
T Consensus        88 ~~~Ik~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~~--~i~~ll~LL~~G~~~~k~~vLk~L~nLS~np  165 (254)
T PF04826_consen   88 QEQIKMYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLAN--YIPDLLSLLSSGSEKTKVQVLKVLVNLSENP  165 (254)
T ss_pred             HHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHHh--hHHHHHHHHHcCChHHHHHHHHHHHHhccCH
Confidence            87766   5555544333  678999999999999988777777654  7999999999999999999999999999999


Q ss_pred             hhHHHHHhCCChHHHHHhccC-CCHHHHHHHHHHHHHhcCC
Q 044999          371 ADRVALADAGAVPIMIELLHD-ESEELRDNAAESLINFSED  410 (461)
Q Consensus       371 ~~~~~~~~~~~i~~L~~ll~~-~~~~~~~~a~~~L~~l~~~  410 (461)
                      .....+..+++++.++.+++. .+.++...+...+.|+..+
T Consensus       166 ~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~  206 (254)
T PF04826_consen  166 DMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINEN  206 (254)
T ss_pred             HHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHh
Confidence            999999999999999999966 5788999999999999544

>PRK09687 putative lyase; Provisional

Probab=99.66  E-value=2.7e-14  Score=127.05  Aligned_cols=254  Identities=18%  Similarity=0.171  Sum_probs=200.7

Q ss_pred             CHHHHHhcCCCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHhhCChHHHHHHH
Q 044999           98 VINSVLRLFPQSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLNSCNDGTRRYLLEILSALALLREVRRVLI  177 (461)
Q Consensus        98 ~l~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~  177 (461)
                      .++.|...|.+.+..++..++..|..+-..           ..++.+..++.+.++.+|..|+.+|..+......     
T Consensus        24 ~~~~L~~~L~d~d~~vR~~A~~aL~~~~~~-----------~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~-----   87 (280)
T PRK09687         24 NDDELFRLLDDHNSLKRISSIRVLQLRGGQ-----------DVFRLAIELCSSKNPIERDIGADILSQLGMAKRC-----   87 (280)
T ss_pred             cHHHHHHHHhCCCHHHHHHHHHHHHhcCcc-----------hHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc-----
Confidence            478899999999999999999998866532           2567788889999999999999999998743221     


Q ss_pred             hcCCHHHHHHH-HcCCCHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhcccCCHHHHHHHHHHHHHHhcCccchh
Q 044999          178 CLGGLRYLVEA-VSFGSMVSRERACQAIGLLAVTGRARRLLVELGVIPGLVELFHIGDWTTKLVAGNTLGVVAAHVEYIT  256 (461)
Q Consensus       178 ~~~~l~~l~~~-l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~  256 (461)
                      ....++.|..+ ++++++.+|..++.+|+++.......    ...++..+...+.++++.++..++.+|+.+..      
T Consensus        88 ~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~----~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~------  157 (280)
T PRK09687         88 QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY----SPKIVEQSQITAFDKSTNVRFAVAFALSVIND------  157 (280)
T ss_pred             hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc----chHHHHHHHHHhhCCCHHHHHHHHHHHhccCC------
Confidence            11246667766 57779999999999999986544321    11245667778888899999999999976532      


Q ss_pred             hhhhcCCHHHHHHHhCCCChhHHHHHHHHHHHhccCcccHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCchhHHh
Q 044999          257 PVAEAGAIPLYAELLQGPDSTGKEISEDVFCILAVSEANANAIAEHLVRILREGDNEANAAAADVLWDLAGYKHSVPVIR  336 (461)
Q Consensus       257 ~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~l~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~l~  336 (461)
                          ...++.|+.+++++++.++..|+.+|..+...   .....+.|+..+.+.++.++..|+.+|+.+-.         
T Consensus       158 ----~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~---~~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~~---------  221 (280)
T PRK09687        158 ----EAAIPLLINLLKDPNGDVRNWAAFALNSNKYD---NPDIREAFVAMLQDKNEEIRIEAIIGLALRKD---------  221 (280)
T ss_pred             ----HHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCC---CHHHHHHHHHHhcCCChHHHHHHHHHHHccCC---------
Confidence                23589999999999999999999999999322   22455889999999999999999999998632         


Q ss_pred             hcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhcc-CCCHHHHHHHHHHHHH
Q 044999          337 NSGAIPILVNLLRGENDEVREKVSGAIAQLSYNEADRVALADAGAVPIMIELLH-DESEELRDNAAESLIN  406 (461)
Q Consensus       337 ~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~-~~~~~~~~~a~~~L~~  406 (461)
                       ..+++.|++.+.+++  ++..++.+|+.+...          ..+|.|.+++. ++++.++..+.++|..
T Consensus       222 -~~av~~Li~~L~~~~--~~~~a~~ALg~ig~~----------~a~p~L~~l~~~~~d~~v~~~a~~a~~~  279 (280)
T PRK09687        222 -KRVLSVLIKELKKGT--VGDLIIEAAGELGDK----------TLLPVLDTLLYKFDDNEIITKAIDKLKR  279 (280)
T ss_pred             -hhHHHHHHHHHcCCc--hHHHHHHHHHhcCCH----------hHHHHHHHHHhhCCChhHHHHHHHHHhc
Confidence             368899999999866  677888888888753          24899999995 7899999999988753

>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function

Probab=99.65  E-value=7.8e-14  Score=121.08  Aligned_cols=191  Identities=18%  Similarity=0.143  Sum_probs=166.0

Q ss_pred             hHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHhcCCCCCHHHHHHHHHHHHHHhccC
Q 044999           49 TIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQADGALATEIGQSGVINSVLRLFPQSDDSFRTVLVKCLRVFVTFG  128 (461)
Q Consensus        49 ~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~l~~~~  128 (461)
                      .++.|+.+|+.     ++||.+|..+..++.+.+.  ...+++.+.+.|+++.+.++++++++.++..+..++.+++. +
T Consensus        13 ~l~~Ll~lL~~-----t~dp~i~e~al~al~n~aa--f~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~-~   84 (254)
T PF04826_consen   13 ELQKLLCLLES-----TEDPFIQEKALIALGNSAA--FPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSV-N   84 (254)
T ss_pred             HHHHHHHHHhc-----CCChHHHHHHHHHHHhhcc--ChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCC-C
Confidence            78999999994     4679999999999999988  78999999999999999999999999999999999999984 5


Q ss_pred             hhhHHHHHHcCCHHHHHHHhcC--CChHHHHHHHHHHHHhhCChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHH
Q 044999          129 NENRVIVARNGGLEIVIDLLNS--CNDGTRRYLLEILSALALLREVRRVLICLGGLRYLVEAVSFGSMVSRERACQAIGL  206 (461)
Q Consensus       129 ~~~~~~~~~~g~i~~L~~ll~~--~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~  206 (461)
                      .+++..+..  .++.+++...+  .+..++..+++.|.+++...+.+..+..  .++.++.+|.+++..++..++++|.|
T Consensus        85 ~en~~~Ik~--~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~~--~i~~ll~LL~~G~~~~k~~vLk~L~n  160 (254)
T PF04826_consen   85 DENQEQIKM--YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLAN--YIPDLLSLLSSGSEKTKVQVLKVLVN  160 (254)
T ss_pred             hhhHHHHHH--HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHHh--hHHHHHHHHHcCChHHHHHHHHHHHH
Confidence            577777654  47777774433  3668999999999999977777666644  69999999999999999999999999


Q ss_pred             hhcCchhHHHHHhcCChHHHHHhcccC-CHHHHHHHHHHHHHHhcC
Q 044999          207 LAVTGRARRLLVELGVIPGLVELFHIG-DWTTKLVAGNTLGVVAAH  251 (461)
Q Consensus       207 l~~~~~~~~~~~~~~~i~~L~~ll~~~-~~~~~~~a~~~L~~l~~~  251 (461)
                      |+.++...+.+...++...++.++..+ +.++...++..+.|+..+
T Consensus       161 LS~np~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~  206 (254)
T PF04826_consen  161 LSENPDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINEN  206 (254)
T ss_pred             hccCHHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHh
Confidence            999999988888888999999999965 678899999999999876

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=99.63  E-value=4.3e-13  Score=139.38  Aligned_cols=274  Identities=19%  Similarity=0.179  Sum_probs=219.8

Q ss_pred             hHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHhcCCCCCHHHHHHHHHHHHHHhccC
Q 044999           49 TIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQADGALATEIGQSGVINSVLRLFPQSDDSFRTVLVKCLRVFVTFG  128 (461)
Q Consensus        49 ~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~l~~~~  128 (461)
                      .++.|+..|..      +|+.+++.|+..|..+..            .+.++.|++.|+++++.|+..++..+..+....
T Consensus       622 ~~~~L~~~L~D------~d~~VR~~Av~~L~~~~~------------~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~  683 (897)
T PRK13800        622 SVAELAPYLAD------PDPGVRRTAVAVLTETTP------------PGFGPALVAALGDGAAAVRRAAAEGLRELVEVL  683 (897)
T ss_pred             hHHHHHHHhcC------CCHHHHHHHHHHHhhhcc------------hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcc
Confidence            67888889975      678899989888887753            235688999999999999999999988775321


Q ss_pred             hhhHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHhhCChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhh
Q 044999          129 NENRVIVARNGGLEIVIDLLNSCNDGTRRYLLEILSALALLREVRRVLICLGGLRYLVEAVSFGSMVSRERACQAIGLLA  208 (461)
Q Consensus       129 ~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~  208 (461)
                      +          ..+.+...|+++++.+|..|+..|..+..           +-...++..|.++++.+|..|+.+|+.+.
T Consensus       684 ~----------~~~~L~~~L~~~d~~VR~~A~~aL~~~~~-----------~~~~~l~~~L~D~d~~VR~~Av~aL~~~~  742 (897)
T PRK13800        684 P----------PAPALRDHLGSPDPVVRAAALDVLRALRA-----------GDAALFAAALGDPDHRVRIEAVRALVSVD  742 (897)
T ss_pred             C----------chHHHHHHhcCCCHHHHHHHHHHHHhhcc-----------CCHHHHHHHhcCCCHHHHHHHHHHHhccc
Confidence            1          13567788899999999999999987642           22345778899999999999999999762


Q ss_pred             cCchhHHHHHhcCChHHHHHhcccCCHHHHHHHHHHHHHHhcCccchhhhhhcCCHHHHHHHhCCCChhHHHHHHHHHHH
Q 044999          209 VTGRARRLLVELGVIPGLVELFHIGDWTTKLVAGNTLGVVAAHVEYITPVAEAGAIPLYAELLQGPDSTGKEISEDVFCI  288 (461)
Q Consensus       209 ~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~  288 (461)
                                   ..+.|...+.++++.++..++.+|..+...        ....++.|..+++++++.+|..++.+|.+
T Consensus       743 -------------~~~~l~~~l~D~~~~VR~~aa~aL~~~~~~--------~~~~~~~L~~ll~D~d~~VR~aA~~aLg~  801 (897)
T PRK13800        743 -------------DVESVAGAATDENREVRIAVAKGLATLGAG--------GAPAGDAVRALTGDPDPLVRAAALAALAE  801 (897)
T ss_pred             -------------CcHHHHHHhcCCCHHHHHHHHHHHHHhccc--------cchhHHHHHHHhcCCCHHHHHHHHHHHHh
Confidence                         234577889999999999999999988653        11236889999999999999999999999


Q ss_pred             hccCcccHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCchhHHhhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcC
Q 044999          289 LAVSEANANAIAEHLVRILREGDNEANAAAADVLWDLAGYKHSVPVIRNSGAIPILVNLLRGENDEVREKVSGAIAQLSY  368 (461)
Q Consensus       289 l~~~~~~~~~i~~~l~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~  368 (461)
                      +...+    ...+.+...+.+.++.+|..|+.+|..+..          ...++.|+.++.+++..||..|+.+|..+..
T Consensus       802 ~g~~~----~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~----------~~a~~~L~~~L~D~~~~VR~~A~~aL~~~~~  867 (897)
T PRK13800        802 LGCPP----DDVAAATAALRASAWQVRQGAARALAGAAA----------DVAVPALVEALTDPHLDVRKAAVLALTRWPG  867 (897)
T ss_pred             cCCcc----hhHHHHHHHhcCCChHHHHHHHHHHHhccc----------cchHHHHHHHhcCCCHHHHHHHHHHHhccCC
Confidence            85432    222457788899999999999999988742          3456899999999999999999999999743


Q ss_pred             ChhhHHHHHhCCChHHHHHhccCCCHHHHHHHHHHHH
Q 044999          369 NEADRVALADAGAVPIMIELLHDESEELRDNAAESLI  405 (461)
Q Consensus       369 ~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~  405 (461)
                      ++.         ..+.|...+++.++.|+..|..+|.
T Consensus       868 ~~~---------a~~~L~~al~D~d~~Vr~~A~~aL~  895 (897)
T PRK13800        868 DPA---------ARDALTTALTDSDADVRAYARRALA  895 (897)
T ss_pred             CHH---------HHHHHHHHHhCCCHHHHHHHHHHHh
Confidence            443         3677888899999999999999885

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=99.62  E-value=1.7e-12  Score=129.12  Aligned_cols=359  Identities=21%  Similarity=0.195  Sum_probs=243.9

Q ss_pred             hHHHHHHHhhcCCHHHHHHHHHHHHhhcCCCchhHHHh-hHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHhcCCchh
Q 044999           11 AFNRFEQAVVSGSEALQVKALTKLARVSKFAPQDILAA-TIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQADGAL   89 (461)
Q Consensus        11 ~~~~l~~ll~~~~~~~~~~a~~~l~~la~~~~~~~l~~-~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~   89 (461)
                      ..+.+.+-+.++++.+|..|.+.++++.++    .+.+ .++.+.+++.+      +++.+++.|+.++.++... +++.
T Consensus        80 ~~n~l~kdl~~~n~~~~~lAL~~l~~i~~~----~~~~~l~~~v~~ll~~------~~~~VRk~A~~~l~~i~~~-~p~~  148 (526)
T PF01602_consen   80 IINSLQKDLNSPNPYIRGLALRTLSNIRTP----EMAEPLIPDVIKLLSD------PSPYVRKKAALALLKIYRK-DPDL  148 (526)
T ss_dssp             HHHHHHHHHCSSSHHHHHHHHHHHHHH-SH----HHHHHHHHHHHHHHHS------SSHHHHHHHHHHHHHHHHH-CHCC
T ss_pred             HHHHHHHhhcCCCHHHHHHHHhhhhhhccc----chhhHHHHHHHHHhcC------CchHHHHHHHHHHHHHhcc-CHHH
Confidence            456777788889999999999999988822    2334 77888888876      4577888899999999875 3221


Q ss_pred             HHHHHhcCCHHHHHhcCCCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHhhC-
Q 044999           90 ATEIGQSGVINSVLRLFPQSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLNSCNDGTRRYLLEILSALAL-  168 (461)
Q Consensus        90 ~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~-  168 (461)
                         +... .++.+.+++.+.++.++..++.++..+ ..++..... .-...+..|.+++...++..+...++.+..++. 
T Consensus       149 ---~~~~-~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~~~~~~~~-~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~  222 (526)
T PF01602_consen  149 ---VEDE-LIPKLKQLLSDKDPSVVSAALSLLSEI-KCNDDSYKS-LIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPM  222 (526)
T ss_dssp             ---HHGG-HHHHHHHHTTHSSHHHHHHHHHHHHHH-HCTHHHHTT-HHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSS
T ss_pred             ---HHHH-HHHHHhhhccCCcchhHHHHHHHHHHH-ccCcchhhh-hHHHHHHHhhhcccccchHHHHHHHHHHHhcccC
Confidence               1122 578899999999999888888888877 222222111 111235556666688889999999999998884 


Q ss_pred             ChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhcccCCHHHHHHHHHHHHHH
Q 044999          169 LREVRRVLICLGGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRARRLLVELGVIPGLVELFHIGDWTTKLVAGNTLGVV  248 (461)
Q Consensus       169 ~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l  248 (461)
                      .+.....   ...++.+..++++.++.+...+..++..+......     -..+++.|..++.++++.++..++..|..+
T Consensus       223 ~~~~~~~---~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~~~~-----~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l  294 (526)
T PF01602_consen  223 EPEDADK---NRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPSPEL-----LQKAINPLIKLLSSSDPNVRYIALDSLSQL  294 (526)
T ss_dssp             SHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSHHH-----HHHHHHHHHHHHTSSSHHHHHHHHHHHHHH
T ss_pred             ChhhhhH---HHHHHHHHHHhhccccHHHHHHHHHHHHhhcchHH-----HHhhHHHHHHHhhcccchhehhHHHHHHHh
Confidence            3333322   34577788888888889999999999988776652     233678899999988999999999999998


Q ss_pred             hcCccchhhhhhcCCHHHHHHHhC-CCChhHHHHHHHHHHHhccCcccHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHhh
Q 044999          249 AAHVEYITPVAEAGAIPLYAELLQ-GPDSTGKEISEDVFCILAVSEANANAIAEHLVRILR-EGDNEANAAAADVLWDLA  326 (461)
Q Consensus       249 ~~~~~~~~~~~~~g~i~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~l~~ll~-~~~~~~~~~a~~~L~~l~  326 (461)
                      +...  ...+ . . ....+..+. +++..++..++..|..++. +.+...+.+.+.+.++ ..+++.+..++..++.++
T Consensus       295 ~~~~--~~~v-~-~-~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~-~~n~~~Il~eL~~~l~~~~d~~~~~~~i~~I~~la  368 (526)
T PF01602_consen  295 AQSN--PPAV-F-N-QSLILFFLLYDDDPSIRKKALDLLYKLAN-ESNVKEILDELLKYLSELSDPDFRRELIKAIGDLA  368 (526)
T ss_dssp             CCHC--HHHH-G-T-HHHHHHHHHCSSSHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHH
T ss_pred             hccc--chhh-h-h-hhhhhheecCCCChhHHHHHHHHHhhccc-ccchhhHHHHHHHHHHhccchhhhhhHHHHHHHHH
Confidence            8753  2222 2 2 222333444 7788999999999998875 3445556678888884 447889999999998888


Q ss_pred             C-CCCchhHHhhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcC-ChhhHHHHHhCCChHHHHHhccC-CCHHHHHHHHHH
Q 044999          327 G-YKHSVPVIRNSGAIPILVNLLRGENDEVREKVSGAIAQLSY-NEADRVALADAGAVPIMIELLHD-ESEELRDNAAES  403 (461)
Q Consensus       327 ~-~~~~~~~l~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~-~~~~~~~~~~~~~i~~L~~ll~~-~~~~~~~~a~~~  403 (461)
                      . .+......     ++.+++++....+.+...+...+.++.. +++.+...     +..|.+.+.+ .+++++..++|+
T Consensus       369 ~~~~~~~~~~-----v~~l~~ll~~~~~~~~~~~~~~i~~ll~~~~~~~~~~-----l~~L~~~l~~~~~~~~~~~~~wi  438 (526)
T PF01602_consen  369 EKFPPDAEWY-----VDTLLKLLEISGDYVSNEIINVIRDLLSNNPELREKI-----LKKLIELLEDISSPEALAAAIWI  438 (526)
T ss_dssp             HHHGSSHHHH-----HHHHHHHHHCTGGGCHCHHHHHHHHHHHHSTTTHHHH-----HHHHHHHHTSSSSHHHHHHHHHH
T ss_pred             hccCchHHHH-----HHHHHHhhhhccccccchHHHHHHHHhhcChhhhHHH-----HHHHHHHHHHhhHHHHHHHHHhh
Confidence            3 33333332     3457777776666666666666666665 55544443     5556666643 566677777777


Q ss_pred             HHHhcCC
Q 044999          404 LINFSED  410 (461)
Q Consensus       404 L~~l~~~  410 (461)
                      +...+..
T Consensus       439 lGEy~~~  445 (526)
T PF01602_consen  439 LGEYGEL  445 (526)
T ss_dssp             HHHHCHH
T ss_pred             hcccCCc
Confidence            7766543

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.61  E-value=1.1e-11  Score=123.46  Aligned_cols=389  Identities=16%  Similarity=0.189  Sum_probs=255.6

Q ss_pred             cHHHhHHHHHHHhhcCCHHHHHHHHHHHHhhc---CCCchhHHHhhHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHh
Q 044999            7 NWEEAFNRFEQAVVSGSEALQVKALTKLARVS---KFAPQDILAATIPILARLLGENNFSGNLTRSIQQAAAYCLKQIAS   83 (461)
Q Consensus         7 ~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~la---~~~~~~~l~~~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~   83 (461)
                      +|.+.++.+++..+|+++..|..|...|+.+.   .......+....+.+.+.+..    . +++ +...|++++..++.
T Consensus       115 ~WPell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~~~~~l~~lf~q~~~d----~-s~~-vr~~a~rA~~a~~~  188 (1075)
T KOG2171|consen  115 KWPELLQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQPHLDDLLRLFSQTMTD----P-SSP-VRVAAVRALGAFAE  188 (1075)
T ss_pred             chHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccchhHHHHHHHHHHhccC----C-cch-HHHHHHHHHHHHHH
Confidence            79999999999999999999999999999999   333333445577777888875    3 334 66669999999987


Q ss_pred             cCC--chhHHHHHh--cCCHHHHHhcCCCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhcCC--ChHHHH
Q 044999           84 QAD--GALATEIGQ--SGVINSVLRLFPQSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLNSC--NDGTRR  157 (461)
Q Consensus        84 ~~~--~~~~~~~~~--~~~l~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~--~~~~~~  157 (461)
                      ..+  ......+..  .+.+..+-+.+..++.+....+..++..++...+..-.-... .++...+++.++.  ++.+|.
T Consensus       189 ~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~l~~~l~-~ii~~~l~Ia~n~~l~~~~R~  267 (1075)
T KOG2171|consen  189 YLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKLLRPHLS-QIIQFSLEIAKNKELENSIRH  267 (1075)
T ss_pred             HhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHHHHHHHH-HHHHHHHHHhhcccccHHHHH
Confidence            521  222222221  233444445566777777778888888888655443222221 2455556666554  568999


Q ss_pred             HHHHHHHHhhCChHHHHHHHh---cCCHHHHHHHHcCC--C--------------HHHHHHHHHHHHHhhcCchhHHHHH
Q 044999          158 YLLEILSALALLREVRRVLIC---LGGLRYLVEAVSFG--S--------------MVSRERACQAIGLLAVTGRARRLLV  218 (461)
Q Consensus       158 ~a~~~L~~l~~~~~~~~~~~~---~~~l~~l~~~l~~~--~--------------~~~~~~a~~~L~~l~~~~~~~~~~~  218 (461)
                      .|+.+|..+++......+...   ...++.++..+...  +              ..-...|..++-.++.+=+.+..+.
T Consensus       268 ~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~p  347 (1075)
T KOG2171|consen  268 LALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQVLP  347 (1075)
T ss_pred             HHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCChhhehH
Confidence            999999999965333222211   12445555544322  1              1134566777777766555433322


Q ss_pred             hcCChHHHHHhcccCCHHHHHHHHHHHHHHhcCccchhhhhh--cCCHHHHHHHhCCCChhHHHHHHHHHHHhccCcc--
Q 044999          219 ELGVIPGLVELFHIGDWTTKLVAGNTLGVVAAHVEYITPVAE--AGAIPLYAELLQGPDSTGKEISEDVFCILAVSEA--  294 (461)
Q Consensus       219 ~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~--~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~--  294 (461)
                        -.++.+-.++++.++.-|..++.+|+.++..  ..+.+..  ..+++..+..+++++|.||..|+.+++.++.+-.  
T Consensus       348 --~~~~~l~~~l~S~~w~~R~AaL~Als~i~EG--c~~~m~~~l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~  423 (1075)
T KOG2171|consen  348 --PLFEALEAMLQSTEWKERHAALLALSVIAEG--CSDVMIGNLPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPE  423 (1075)
T ss_pred             --HHHHHHHHHhcCCCHHHHHHHHHHHHHHHcc--cHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHH
Confidence              2467777788899999999999999998865  2222222  2567888888999999999999999999976432  


Q ss_pred             cHH----HHHHHHHHHhccC-CHHHHHHHHHHHHHhhCC-CCchhHHhhcCCHH-HHHHhhcCCCHHHHHHHHHHHHHhc
Q 044999          295 NAN----AIAEHLVRILREG-DNEANAAAADVLWDLAGY-KHSVPVIRNSGAIP-ILVNLLRGENDEVREKVSGAIAQLS  367 (461)
Q Consensus       295 ~~~----~i~~~l~~ll~~~-~~~~~~~a~~~L~~l~~~-~~~~~~l~~~g~i~-~L~~ll~~~~~~v~~~a~~~L~~l~  367 (461)
                      ..+    .+.+.|+..+.+. ++.++.+|+.++.|++.. +...-.-.-.+.++ .+..++.++++.+++.++.+|+..+
T Consensus       424 iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA  503 (1075)
T KOG2171|consen  424 IQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVA  503 (1075)
T ss_pred             HHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHH
Confidence            222    2227788888655 789999999999999853 32222222334555 5555667889999999999999999


Q ss_pred             CChhhHHHHHh--CCChHHHHHhccCCC-H---HHHHHHHHHHHHhc
Q 044999          368 YNEADRVALAD--AGAVPIMIELLHDES-E---ELRDNAAESLINFS  408 (461)
Q Consensus       368 ~~~~~~~~~~~--~~~i~~L~~ll~~~~-~---~~~~~a~~~L~~l~  408 (461)
                      ...+  ..+..  .-.+|.|...++..+ .   .+|.....++.-++
T Consensus       504 ~AA~--~~F~pY~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~  548 (1075)
T KOG2171|consen  504 DAAQ--EKFIPYFDRLMPLLKNFLQNADDKDLRELRGKTMECLSLIA  548 (1075)
T ss_pred             HHHh--hhhHhHHHHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHH
Confidence            7222  22221  125788888885533 3   34444444444443

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=99.61  E-value=8.4e-13  Score=137.24  Aligned_cols=276  Identities=15%  Similarity=0.113  Sum_probs=217.1

Q ss_pred             HhHHHHHHHhhcCCHHHHHHHHHHHHhhcCCCchhHHHhhHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHhcCCchh
Q 044999           10 EAFNRFEQAVVSGSEALQVKALTKLARVSKFAPQDILAATIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQADGAL   89 (461)
Q Consensus        10 ~~~~~l~~ll~~~~~~~~~~a~~~l~~la~~~~~~~l~~~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~   89 (461)
                      ..++.|...|.++|+.||..|+..|+.+..       ...++.|+..|..      +++++...|+.+|..+...  .  
T Consensus       621 ~~~~~L~~~L~D~d~~VR~~Av~~L~~~~~-------~~~~~~L~~aL~D------~d~~VR~~Aa~aL~~l~~~--~--  683 (897)
T PRK13800        621 PSVAELAPYLADPDPGVRRTAVAVLTETTP-------PGFGPALVAALGD------GAAAVRRAAAEGLRELVEV--L--  683 (897)
T ss_pred             hhHHHHHHHhcCCCHHHHHHHHHHHhhhcc-------hhHHHHHHHHHcC------CCHHHHHHHHHHHHHHHhc--c--
Confidence            356788999999999999999999997651       1267888888865      5677888899999888652  1  


Q ss_pred             HHHHHhcCCHHHHHhcCCCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHhhCC
Q 044999           90 ATEIGQSGVINSVLRLFPQSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLNSCNDGTRRYLLEILSALALL  169 (461)
Q Consensus        90 ~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~  169 (461)
                             ...+.+...|+++++.++..++..|..+...+            ...++..|++.++.+|..|+.+|..+.. 
T Consensus       684 -------~~~~~L~~~L~~~d~~VR~~A~~aL~~~~~~~------------~~~l~~~L~D~d~~VR~~Av~aL~~~~~-  743 (897)
T PRK13800        684 -------PPAPALRDHLGSPDPVVRAAALDVLRALRAGD------------AALFAAALGDPDHRVRIEAVRALVSVDD-  743 (897)
T ss_pred             -------CchHHHHHHhcCCCHHHHHHHHHHHHhhccCC------------HHHHHHHhcCCCHHHHHHHHHHHhcccC-
Confidence                   11256778888899999999988887654222            3457788999999999999999987621 


Q ss_pred             hHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhcccCCHHHHHHHHHHHHHHh
Q 044999          170 REVRRVLICLGGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRARRLLVELGVIPGLVELFHIGDWTTKLVAGNTLGVVA  249 (461)
Q Consensus       170 ~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~  249 (461)
                                  .+.+...+.++++++|..++.+|+.+....        ...++.|..+++++++.++..|+.+|..+.
T Consensus       744 ------------~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~--------~~~~~~L~~ll~D~d~~VR~aA~~aLg~~g  803 (897)
T PRK13800        744 ------------VESVAGAATDENREVRIAVAKGLATLGAGG--------APAGDAVRALTGDPDPLVRAAALAALAELG  803 (897)
T ss_pred             ------------cHHHHHHhcCCCHHHHHHHHHHHHHhcccc--------chhHHHHHHHhcCCCHHHHHHHHHHHHhcC
Confidence                        244677889999999999999999985432        223788999999999999999999998875


Q ss_pred             cCccchhhhhhcCCHHHHHHHhCCCChhHHHHHHHHHHHhccCcccHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhCCC
Q 044999          250 AHVEYITPVAEAGAIPLYAELLQGPDSTGKEISEDVFCILAVSEANANAIAEHLVRILREGDNEANAAAADVLWDLAGYK  329 (461)
Q Consensus       250 ~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~l~~ll~~~~~~~~~~a~~~L~~l~~~~  329 (461)
                      ..+         ..++.+...+.++++.+|..|+.+|..+...     ...+.|+.+|.++++.+|..|+.+|..+... 
T Consensus       804 ~~~---------~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~~-----~a~~~L~~~L~D~~~~VR~~A~~aL~~~~~~-  868 (897)
T PRK13800        804 CPP---------DDVAAATAALRASAWQVRQGAARALAGAAAD-----VAVPALVEALTDPHLDVRKAAVLALTRWPGD-  868 (897)
T ss_pred             Ccc---------hhHHHHHHHhcCCChHHHHHHHHHHHhcccc-----chHHHHHHHhcCCCHHHHHHHHHHHhccCCC-
Confidence            421         1235688889999999999999999887532     2238899999999999999999999997322 


Q ss_pred             CchhHHhhcCCHHHHHHhhcCCCHHHHHHHHHHHHH
Q 044999          330 HSVPVIRNSGAIPILVNLLRGENDEVREKVSGAIAQ  365 (461)
Q Consensus       330 ~~~~~l~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~  365 (461)
                              ....+.|...+++.++.|+..|..+|..
T Consensus       869 --------~~a~~~L~~al~D~d~~Vr~~A~~aL~~  896 (897)
T PRK13800        869 --------PAARDALTTALTDSDADVRAYARRALAH  896 (897)
T ss_pred             --------HHHHHHHHHHHhCCCHHHHHHHHHHHhh
Confidence                    2246678889999999999999998863

>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]

Probab=99.59  E-value=4.1e-12  Score=119.01  Aligned_cols=394  Identities=15%  Similarity=0.091  Sum_probs=266.7

Q ss_pred             hhcCCHHHHHHHHHHHHhhc--CCCchhHH-Hh-hHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHhcCCchhHHHHH
Q 044999           19 VVSGSEALQVKALTKLARVS--KFAPQDIL-AA-TIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQADGALATEIG   94 (461)
Q Consensus        19 l~~~~~~~~~~a~~~l~~la--~~~~~~~l-~~-~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~   94 (461)
                      +-+.+++....|.....++.  +...+..+ .. +++.++.+++.    .+..+..+...+..+..+... .......+.
T Consensus        18 L~~~dpe~lvrai~~~kN~vig~~~~K~~~ik~GAv~~Ll~L~s~----e~~s~~~k~~~~~llns~f~~-eqd~v~svL   92 (678)
T KOG1293|consen   18 LLHLDPEQLVRAIYMSKNLVIGFTDNKETNIKLGAVELLLALLSL----EDGSTELKNGFAVLLNSLFLG-EQDKVDSVL   92 (678)
T ss_pred             hhcCCHHHHHHHHHHhcchhhcCCCccchhhhhcchHHHHhhccc----cCCchhhhhhHHHHHHhHHhh-ccchHHHHH
Confidence            34556666677777777777  66666644 44 89999999987    666666676676777777775 677778888


Q ss_pred             hcCCHHHHHhcCCCCC-HHHHHHHHHHHHHHhccChhh--HHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHhhCChH
Q 044999           95 QSGVINSVLRLFPQSD-DSFRTVLVKCLRVFVTFGNEN--RVIVARNGGLEIVIDLLNSCNDGTRRYLLEILSALALLRE  171 (461)
Q Consensus        95 ~~~~l~~L~~ll~~~~-~~~~~~~~~~l~~l~~~~~~~--~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~  171 (461)
                      +.+.++.|.+++++.| ..+.....+++..+.+.++..  .........++.+..++..........-+....+++..++
T Consensus        93 ~~~~ll~Ll~LLs~sD~~~~le~~l~~lR~Ifet~~~q~~~~s~~~~sIi~~~s~l~s~~lk~~~~l~~~~~a~~s~~~~  172 (678)
T KOG1293|consen   93 RIIELLKLLQLLSESDSLNVLEKTLRCLRTIFETSKYQDKKMSLHLKSIIVKFSLLYSIELKYISRLDVSRAAHLSSTKD  172 (678)
T ss_pred             HHhhHHHHHHHhcCcchHhHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhccccccch
Confidence            9999999999999998 777888889998777654322  2333344456666666664445555666666777777778


Q ss_pred             HHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHH---HhhcCchh-HHH----HHhcCChH--HHHHhcccCCHHHHHHH
Q 044999          172 VRRVLICLGGLRYLVEAVSFGSMVSRERACQAIG---LLAVTGRA-RRL----LVELGVIP--GLVELFHIGDWTTKLVA  241 (461)
Q Consensus       172 ~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~---~l~~~~~~-~~~----~~~~~~i~--~L~~ll~~~~~~~~~~a  241 (461)
                      .+..+...|+.+.+.-++...+...|..|+.+++   ++..+++. ...    ....|+.+  ....++++++...+..+
T Consensus       173 hq~Il~Na~i~ekI~~l~~~~s~~~RlaaL~~~sr~~~iL~Nn~~~sm~~l~~L~d~~v~~r~~v~rL~k~~~~s~~l~s  252 (678)
T KOG1293|consen  173 HQLILCNAGILEKINILLMYLSSKLRLAALLCLSRGDRILRNNPLGSMFLLGLLKDKGVNIRCVVTRLLKDPDFSERLRS  252 (678)
T ss_pred             hhheeccccchhhHHHHHHhhhHHHHHHHHHHhhccceeeecCchhHHHHHHHHhccccchhhhhhhhhhCCCccHHHHH
Confidence            8888888888888888888778899999999999   77777765 222    23355555  45566778888888888


Q ss_pred             HHHHHHHhcCccchhh------hhhcC----------------CHH-----HHHH-----HhCC-CChhHHHHHHH----
Q 044999          242 GNTLGVVAAHVEYITP------VAEAG----------------AIP-----LYAE-----LLQG-PDSTGKEISED----  284 (461)
Q Consensus       242 ~~~L~~l~~~~~~~~~------~~~~g----------------~i~-----~L~~-----ll~~-~~~~~~~~a~~----  284 (461)
                      +.++.++.....+...      +.+.|                ++.     ..+.     +... ..+.....+..    
T Consensus       253 l~cl~~~~~~s~~~d~l~~~~~~~dmgd~~i~q~~~i~l~~~P~~s~l~~~~~l~c~~a~~~sklq~~~~e~~~~~~~~e  332 (678)
T KOG1293|consen  253 LECLVPYLRKSFNYDPLPWWFIFFDMGDSLIVQYNCIVLMNDPGLSTLDHTNVLFCILARFASKLQLPQHEEATLKTTTE  332 (678)
T ss_pred             HHHHHHHHhccccccccccceeeccCchHHHHHHhhheeecCCceeehhhhhhhHHHHHHHHHhhhhHHhhhhhhhhHHH
Confidence            8888776543211110      01111                000     0000     0000 01111111111    


Q ss_pred             HH---HHhc-cCccc----------------------HHHHH-----HHHHHHhccCCHHHHHHHHHHHHHhhCC-CCch
Q 044999          285 VF---CILA-VSEAN----------------------ANAIA-----EHLVRILREGDNEANAAAADVLWDLAGY-KHSV  332 (461)
Q Consensus       285 ~L---~~l~-~~~~~----------------------~~~i~-----~~l~~ll~~~~~~~~~~a~~~L~~l~~~-~~~~  332 (461)
                      .+   +.++ ..+.+                      ++++.     ..+.......+...+.+|+.++.+++.. ...+
T Consensus       333 llf~~~sl~a~~~~~~~i~l~e~~i~~~~~~~~~i~~~k~~l~~~t~~~l~~~~~~kd~~~~aaa~l~~~s~srsV~aL~  412 (678)
T KOG1293|consen  333 LLFICASLAASDEKYRLILLNETLILNHLEYGLEISLKKEILETTTESHLMCLPPIKDHDFVAAALLCLKSFSRSVSALR  412 (678)
T ss_pred             HHHHHHHHhhcchhhhHHHhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHH
Confidence            11   1111 11111                      11221     2222233445777888999999998854 3333


Q ss_pred             hHHhhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcC-ChhhHHHHHhCCChHHHHHhccCCCHHHHHHHHHHHHHhcCCC
Q 044999          333 PVIRNSGAIPILVNLLRGENDEVREKVSGAIAQLSY-NEADRVALADAGAVPIMIELLHDESEELRDNAAESLINFSEDP  411 (461)
Q Consensus       333 ~~l~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~-~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~  411 (461)
                      ..+....+.+.|++++.+++..++..++.+|+|+.. ....+..+.+.|+|..+.+++.+.++.++..+.|+|.++..+.
T Consensus       413 tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~  492 (678)
T KOG1293|consen  413 TGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFNC  492 (678)
T ss_pred             cCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcc
Confidence            335677889999999999999999999999999999 7888999999999999999999999999999999999999887


Q ss_pred             cchHHH
Q 044999          412 LQHERI  417 (461)
Q Consensus       412 ~~~~~l  417 (461)
                      +....+
T Consensus       493 de~~k~  498 (678)
T KOG1293|consen  493 DEEEKF  498 (678)
T ss_pred             hHHHHH
Confidence            654333

>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments

Probab=99.57  E-value=4.5e-12  Score=117.23  Aligned_cols=312  Identities=14%  Similarity=0.126  Sum_probs=229.0

Q ss_pred             hHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHhcCCchhHHHHHhc-----CCHHHHHhcCCCCCHHHHHHHHHHHHH
Q 044999           49 TIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQADGALATEIGQS-----GVINSVLRLFPQSDDSFRTVLVKCLRV  123 (461)
Q Consensus        49 ~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~-----~~l~~L~~ll~~~~~~~~~~~~~~l~~  123 (461)
                      .+..++++++.    . ..++..+.....+..+... ++.....+.+.     .....++++|..++..+...++..+..
T Consensus        54 y~~~~l~ll~~----~-~~~d~vqyvL~Li~dll~~-~~~~~~~f~~~~~~~~~~~~~fl~lL~~~d~~i~~~a~~iLt~  127 (429)
T cd00256          54 YVKTFVNLLSQ----I-DKDDTVRYVLTLIDDMLQE-DDTRVKLFHDDALLKKKTWEPFFNLLNRQDQFIVHMSFSILAK  127 (429)
T ss_pred             HHHHHHHHHhc----c-CcHHHHHHHHHHHHHHHHh-chHHHHHHHHHhhccccchHHHHHHHcCCchhHHHHHHHHHHH
Confidence            66777888874    2 3455667677888888875 44444555543     456778889998888889999999987


Q ss_pred             HhccChhhHHHHHHcCCHHHHHHHhcCC-ChHHHHHHHHHHHHhhCChHHHHHHHhcCCHHHHHHHHcCC--CHHHHHHH
Q 044999          124 FVTFGNENRVIVARNGGLEIVIDLLNSC-NDGTRRYLLEILSALALLREVRRVLICLGGLRYLVEAVSFG--SMVSRERA  200 (461)
Q Consensus       124 l~~~~~~~~~~~~~~g~i~~L~~ll~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~~l~~~--~~~~~~~a  200 (461)
                      +...+..........-.++.+...+.+. +...+..++.++..+...++.|..+.+.++++.|+.+|+..  +..+++.+
T Consensus       128 l~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~  207 (429)
T cd00256         128 LACFGLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFVLADGVPTLVKLLSNATLGFQLQYQS  207 (429)
T ss_pred             HHhcCccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHHHccCHHHHHHHHhhccccHHHHHHH
Confidence            7764433211111111334555666654 45778888999999999999999999999999999999764  45899999


Q ss_pred             HHHHHHhhcCchhHHHHHhcCChHHHHHhcc-cCCHHHHHHHHHHHHHHhcCc-------cchhhhhhcCCHHHHHHHhC
Q 044999          201 CQAIGLLAVTGRARRLLVELGVIPGLVELFH-IGDWTTKLVAGNTLGVVAAHV-------EYITPVAEAGAIPLYAELLQ  272 (461)
Q Consensus       201 ~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~-------~~~~~~~~~g~i~~L~~ll~  272 (461)
                      +-+++-++..++....+...+.++.++++++ +..+.+.+.++.+|.|+...+       .....++..|..+ ++..|.
T Consensus       208 ll~lWlLSF~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~-~l~~L~  286 (429)
T cd00256         208 IFCIWLLTFNPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLK-TLQSLE  286 (429)
T ss_pred             HHHHHHHhccHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChHH-HHHHHh
Confidence            9999999999988777778899999999999 456788999999999998742       2334556667544 455554


Q ss_pred             CC---ChhHHHHHH-------HHHHHhccCcccHHHHH-------------------------------HHHHHHhc-cC
Q 044999          273 GP---DSTGKEISE-------DVFCILAVSEANANAIA-------------------------------EHLVRILR-EG  310 (461)
Q Consensus       273 ~~---~~~~~~~a~-------~~L~~l~~~~~~~~~i~-------------------------------~~l~~ll~-~~  310 (461)
                      ..   |+++.+..-       .....++..++...++.                               ..|+++|. +.
T Consensus       287 ~rk~~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~EN~~kf~~~~~~llk~L~~iL~~s~  366 (429)
T cd00256         287 QRKYDDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWRENADRLNEKNYELLKILIHLLETSV  366 (429)
T ss_pred             cCCCCcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHHHHHHHHHhcchHHHHHHHHHHhcCC
Confidence            32   565543222       12233343333333322                               77888884 56


Q ss_pred             CHHHHHHHHHHHHHhhC-CCCchhHHhhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhc
Q 044999          311 DNEANAAAADVLWDLAG-YKHSVPVIRNSGAIPILVNLLRGENDEVREKVSGAIAQLS  367 (461)
Q Consensus       311 ~~~~~~~a~~~L~~l~~-~~~~~~~l~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~  367 (461)
                      ++.+..-||.=++.++. +|.++..+-+.|+=..+++++.+++++|+.+|+.++..+.
T Consensus       367 d~~~laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm  424 (429)
T cd00256         367 DPIILAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQKLM  424 (429)
T ss_pred             CcceeehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence            78888999999999995 5888888889999999999999999999999999988764

The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.57  E-value=2.4e-11  Score=121.05  Aligned_cols=384  Identities=14%  Similarity=0.141  Sum_probs=255.5

Q ss_pred             HHHHHhhcC-CHHHHHHHHHHHHhhc-CCCchhHHHhhHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHhcCCchhHH
Q 044999           14 RFEQAVVSG-SEALQVKALTKLARVS-KFAPQDILAATIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQADGALAT   91 (461)
Q Consensus        14 ~l~~ll~~~-~~~~~~~a~~~l~~la-~~~~~~~l~~~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~   91 (461)
                      .+...+-++ .+.+|..-+..+..++ +.-+. .+-+.++.|.+..++      .++..+..|...|..+..  ...++.
T Consensus        83 ~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e-~WPell~~L~q~~~S------~~~~~rE~al~il~s~~~--~~~~~~  153 (1075)
T KOG2171|consen   83 SLLEIIQSETEPSVRHKLADVIAEIARNDLPE-KWPELLQFLFQSTKS------PNPSLRESALLILSSLPE--TFGNTL  153 (1075)
T ss_pred             HHHHHHHhccchHHHHHHHHHHHHHHHhcccc-chHHHHHHHHHHhcC------CCcchhHHHHHHHHhhhh--hhcccc
Confidence            344444444 5788888899999999 44444 666688889998886      445677779999999987  333332


Q ss_pred             HHHhcCCHHHHHhcCCCCCHHHHHHHHHHHHHHhccCh---hhHHHHHHcCCHHHHHH----HhcCCChHHHHHHHHHHH
Q 044999           92 EIGQSGVINSVLRLFPQSDDSFRTVLVKCLRVFVTFGN---ENRVIVARNGGLEIVID----LLNSCNDGTRRYLLEILS  164 (461)
Q Consensus        92 ~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~---~~~~~~~~~g~i~~L~~----ll~~~~~~~~~~a~~~L~  164 (461)
                      .-.-....+.+.+.+.+++..++..+++++..++...+   .....+..  .+|.++.    ....++.+....++.+|.
T Consensus       154 ~~~~~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~--llP~~l~vl~~~i~~~d~~~a~~~l~~l~  231 (1075)
T KOG2171|consen  154 QPHLDDLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFRD--LLPSLLNVLQEVIQDGDDDAAKSALEALI  231 (1075)
T ss_pred             chhHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHH--HhHHHHHHhHhhhhccchHHHHHHHHHHH
Confidence            22222345666777777766699999999986665443   33333332  3555554    445667777788888888


Q ss_pred             Hhh-CChHHHHHHHhcCCHHHHHHHHcCC--CHHHHHHHHHHHHHhhcCchh-HHHHHh--cCChHHHHHhcccC--C--
Q 044999          165 ALA-LLREVRRVLICLGGLRYLVEAVSFG--SMVSRERACQAIGLLAVTGRA-RRLLVE--LGVIPGLVELFHIG--D--  234 (461)
Q Consensus       165 ~l~-~~~~~~~~~~~~~~l~~l~~~l~~~--~~~~~~~a~~~L~~l~~~~~~-~~~~~~--~~~i~~L~~ll~~~--~--  234 (461)
                      .+. ..+..-...+. .+++..+.+..+.  ++.+|..|+.+|..++...+. .+....  ...++.++.++...  +  
T Consensus       232 El~e~~pk~l~~~l~-~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~e  310 (1075)
T KOG2171|consen  232 ELLESEPKLLRPHLS-QIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDE  310 (1075)
T ss_pred             HHHhhchHHHHHHHH-HHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchh
Confidence            888 44444333222 2466666666655  779999999999999998665 222222  22345555555421  1  


Q ss_pred             ------------HHHHHHHHHHHHHHhcCccchhhhhhcCCHHHHHHHhCCCChhHHHHHHHHHHHhccCcc--cHHH--
Q 044999          235 ------------WTTKLVAGNTLGVVAAHVEYITPVAEAGAIPLYAELLQGPDSTGKEISEDVFCILAVSEA--NANA--  298 (461)
Q Consensus       235 ------------~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~--~~~~--  298 (461)
                                  ......|..+|-.++.+-..+.  +-.-.++.+-.++.+.++.-|..++.+|..++....  ....  
T Consensus       311 w~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~--v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~  388 (1075)
T KOG2171|consen  311 WSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQ--VLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLP  388 (1075)
T ss_pred             hccccccccccccCcHHHHHHHHHHHHhcCChhh--ehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHH
Confidence                        1234567788888887611111  111236778888999999999999999998865433  2222  


Q ss_pred             -HHHHHHHHhccCCHHHHHHHHHHHHHhhCC-CCchhHHhhcCCHHHHHHhhcCC-CHHHHHHHHHHHHHhcC-Chh-hH
Q 044999          299 -IAEHLVRILREGDNEANAAAADVLWDLAGY-KHSVPVIRNSGAIPILVNLLRGE-NDEVREKVSGAIAQLSY-NEA-DR  373 (461)
Q Consensus       299 -i~~~l~~ll~~~~~~~~~~a~~~L~~l~~~-~~~~~~l~~~g~i~~L~~ll~~~-~~~v~~~a~~~L~~l~~-~~~-~~  373 (461)
                       +.+.+++.|++++|.||..|+.+++.++.+ ....+.-......+.|+..+.+. +++++..|+.++-|++. .+. .-
T Consensus       389 ~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l  468 (1075)
T KOG2171|consen  389 KILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSIL  468 (1075)
T ss_pred             HHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHH
Confidence             228888889999999999999999999965 33334444456777888888754 78999999999999987 322 11


Q ss_pred             HHHHhCCChH-HHHHhccCCCHHHHHHHHHHHHHhcCCCc
Q 044999          374 VALADAGAVP-IMIELLHDESEELRDNAAESLINFSEDPL  412 (461)
Q Consensus       374 ~~~~~~~~i~-~L~~ll~~~~~~~~~~a~~~L~~l~~~~~  412 (461)
                      ....+ +.+. .+..+.+++.+.+++.++.+|...+...+
T Consensus       469 ~pYLd-~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~  507 (1075)
T KOG2171|consen  469 EPYLD-GLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQ  507 (1075)
T ss_pred             HHHHH-HHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHh
Confidence            11111 2334 33335578999999999999999886654

>PRK09687 putative lyase; Provisional

Probab=99.56  E-value=2.6e-12  Score=114.34  Aligned_cols=255  Identities=15%  Similarity=0.115  Sum_probs=191.7

Q ss_pred             CHHHHHHHhcCCChHHHHHHHHHHHHhhCChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCchhHHHHHh
Q 044999          140 GLEIVIDLLNSCNDGTRRYLLEILSALALLREVRRVLICLGGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRARRLLVE  219 (461)
Q Consensus       140 ~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~  219 (461)
                      -++.|..+|.+.+..+|..|+..|..+.          ....++.+..++.++++.+|..++++|+.+......     .
T Consensus        24 ~~~~L~~~L~d~d~~vR~~A~~aL~~~~----------~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~-----~   88 (280)
T PRK09687         24 NDDELFRLLDDHNSLKRISSIRVLQLRG----------GQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRC-----Q   88 (280)
T ss_pred             cHHHHHHHHhCCCHHHHHHHHHHHHhcC----------cchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc-----h
Confidence            4778999999999999999999998664          234567778888999999999999999998654322     1


Q ss_pred             cCChHHHHHh-cccCCHHHHHHHHHHHHHHhcCccchhhhhhcCCHHHHHHHhCCCChhHHHHHHHHHHHhccCcccHHH
Q 044999          220 LGVIPGLVEL-FHIGDWTTKLVAGNTLGVVAAHVEYITPVAEAGAIPLYAELLQGPDSTGKEISEDVFCILAVSEANANA  298 (461)
Q Consensus       220 ~~~i~~L~~l-l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~  298 (461)
                      ...++.|..+ ++++++.++..|+.+|+++.......    ...+++.+...+.++++.+|..++.+|..+..     ..
T Consensus        89 ~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~----~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~-----~~  159 (280)
T PRK09687         89 DNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY----SPKIVEQSQITAFDKSTNVRFAVAFALSVIND-----EA  159 (280)
T ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc----chHHHHHHHHHhhCCCHHHHHHHHHHHhccCC-----HH
Confidence            1256777776 56889999999999999986542111    11235667778888899999999999976642     23


Q ss_pred             HHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCchhHHhhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCChhhHHHHHh
Q 044999          299 IAEHLVRILREGDNEANAAAADVLWDLAGYKHSVPVIRNSGAIPILVNLLRGENDEVREKVSGAIAQLSYNEADRVALAD  378 (461)
Q Consensus       299 i~~~l~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~  378 (461)
                      .++.|+.++.++++.++..|+.+|+.+...        ....++.|+..+.+.++.|+..|+++|+.+-. +        
T Consensus       160 ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~--------~~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~~-~--------  222 (280)
T PRK09687        160 AIPLLINLLKDPNGDVRNWAAFALNSNKYD--------NPDIREAFVAMLQDKNEEIRIEAIIGLALRKD-K--------  222 (280)
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHhcCCCC--------CHHHHHHHHHHhcCCChHHHHHHHHHHHccCC-h--------
Confidence            448999999999999999999999999322        22467789999999999999999999988643 2        


Q ss_pred             CCChHHHHHhccCCCHHHHHHHHHHHHHhcCCCcchHHHHHhhCCchHHhHHHHHHHhhhchhHHHHHHHHHhHhh
Q 044999          379 AGAVPIMIELLHDESEELRDNAAESLINFSEDPLQHERISEAIGIPSFQSMQSRLTRIRASDDLMARSMRRMSIEQ  454 (461)
Q Consensus       379 ~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~  454 (461)
                       .++|.|++.+++++  ++..++.+|.++... +   .      ++.+.++.+      .+.|..++..++.++++
T Consensus       223 -~av~~Li~~L~~~~--~~~~a~~ALg~ig~~-~---a------~p~L~~l~~------~~~d~~v~~~a~~a~~~  279 (280)
T PRK09687        223 -RVLSVLIKELKKGT--VGDLIIEAAGELGDK-T---L------LPVLDTLLY------KFDDNEIITKAIDKLKR  279 (280)
T ss_pred             -hHHHHHHHHHcCCc--hHHHHHHHHHhcCCH-h---H------HHHHHHHHh------hCCChhHHHHHHHHHhc
Confidence             35899999997765  667788888877642 1   1      134444443      23466677777776654

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=99.55  E-value=1.9e-12  Score=128.77  Aligned_cols=362  Identities=18%  Similarity=0.138  Sum_probs=255.8

Q ss_pred             cHHHhHHHHHHHhhcCCHHHHHHHHHHHHhhcCCCchhHHHhhHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHhcCC
Q 044999            7 NWEEAFNRFEQAVVSGSEALQVKALTKLARVSKFAPQDILAATIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQAD   86 (461)
Q Consensus         7 ~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~la~~~~~~~l~~~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~   86 (461)
                      +....+..+++++.+.+...|+.+-..+..+.+..+. .+.-++..+.+-|.+      +++.++..|+.+|.++..  +
T Consensus        39 ~~~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~~-~~~l~~n~l~kdl~~------~n~~~~~lAL~~l~~i~~--~  109 (526)
T PF01602_consen   39 DISFLFMEVIKLISSKDLELKRLGYLYLSLYLHEDPE-LLILIINSLQKDLNS------PNPYIRGLALRTLSNIRT--P  109 (526)
T ss_dssp             --GSTHHHHHCTCSSSSHHHHHHHHHHHHHHTTTSHH-HHHHHHHHHHHHHCS------SSHHHHHHHHHHHHHH-S--H
T ss_pred             CCchHHHHHHHHhCCCCHHHHHHHHHHHHHHhhcchh-HHHHHHHHHHHhhcC------CCHHHHHHHHhhhhhhcc--c
Confidence            3446778888999999999999888888888833222 222277888888875      556677779999999986  2


Q ss_pred             chhHHHHHhcCCHHHHHhcCCCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHh
Q 044999           87 GALATEIGQSGVINSVLRLFPQSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLNSCNDGTRRYLLEILSAL  166 (461)
Q Consensus        87 ~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l  166 (461)
                      + ..+.     .++.+.+++.++++.||+.|+.++..+...+++.   +... .++.+.+++.+.++.++..|+.++..+
T Consensus       110 ~-~~~~-----l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~---~~~~-~~~~l~~lL~d~~~~V~~~a~~~l~~i  179 (526)
T PF01602_consen  110 E-MAEP-----LIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDL---VEDE-LIPKLKQLLSDKDPSVVSAALSLLSEI  179 (526)
T ss_dssp             H-HHHH-----HHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCC---HHGG-HHHHHHHHTTHSSHHHHHHHHHHHHHH
T ss_pred             c-hhhH-----HHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHH---HHHH-HHHHHhhhccCCcchhHHHHHHHHHHH
Confidence            2 2222     3678899999999999999999999888765443   2222 588899999999999999999999999


Q ss_pred             hCChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhcccCCHHHHHHHHHHHH
Q 044999          167 ALLREVRRVLICLGGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRARRLLVELGVIPGLVELFHIGDWTTKLVAGNTLG  246 (461)
Q Consensus       167 ~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~  246 (461)
                      ..+++....+ -...+..+.+++...++..+...++++..++...+....-  ...++.+..++++.++.+...++.++.
T Consensus       180 ~~~~~~~~~~-~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~--~~~i~~l~~~l~s~~~~V~~e~~~~i~  256 (526)
T PF01602_consen  180 KCNDDSYKSL-IPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADK--NRIIEPLLNLLQSSSPSVVYEAIRLII  256 (526)
T ss_dssp             HCTHHHHTTH-HHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccCcchhhhh-HHHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhH--HHHHHHHHHHhhccccHHHHHHHHHHH
Confidence            2111111111 1223556666667889999999999999988766652210  346788888888888999999999999


Q ss_pred             HHhcCccchhhhhhcCCHHHHHHHhCCCChhHHHHHHHHHHHhccCcccHHHHH--HHHHHHhc-cCCHHHHHHHHHHHH
Q 044999          247 VVAAHVEYITPVAEAGAIPLYAELLQGPDSTGKEISEDVFCILAVSEANANAIA--EHLVRILR-EGDNEANAAAADVLW  323 (461)
Q Consensus       247 ~l~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~i~--~~l~~ll~-~~~~~~~~~a~~~L~  323 (461)
                      .+...+.     .-..+++.+..++.+.++.++..++..|..++...  ...+.  ...+..+. ++++.++..++.+|.
T Consensus       257 ~l~~~~~-----~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~--~~~v~~~~~~~~~l~~~~d~~Ir~~~l~lL~  329 (526)
T PF01602_consen  257 KLSPSPE-----LLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSN--PPAVFNQSLILFFLLYDDDPSIRKKALDLLY  329 (526)
T ss_dssp             HHSSSHH-----HHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHC--HHHHGTHHHHHHHHHCSSSHHHHHHHHHHHH
T ss_pred             HhhcchH-----HHHhhHHHHHHHhhcccchhehhHHHHHHHhhccc--chhhhhhhhhhheecCCCChhHHHHHHHHHh
Confidence            8877644     23345899999999999999999999999997665  22221  33444555 788999999999999


Q ss_pred             HhhCCCCchhHHhhcCCHHHHHHhhc-CCCHHHHHHHHHHHHHhcC-ChhhHHHHHhCCChHHHHHhccCCCHHHHHHHH
Q 044999          324 DLAGYKHSVPVIRNSGAIPILVNLLR-GENDEVREKVSGAIAQLSY-NEADRVALADAGAVPIMIELLHDESEELRDNAA  401 (461)
Q Consensus       324 ~l~~~~~~~~~l~~~g~i~~L~~ll~-~~~~~v~~~a~~~L~~l~~-~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~  401 (461)
                      .++... +...     +++.|..++. ..+++++..++..++.++. .+......     ++.+++++...++.+...+.
T Consensus       330 ~l~~~~-n~~~-----Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~~~~~~~-----v~~l~~ll~~~~~~~~~~~~  398 (526)
T PF01602_consen  330 KLANES-NVKE-----ILDELLKYLSELSDPDFRRELIKAIGDLAEKFPPDAEWY-----VDTLLKLLEISGDYVSNEII  398 (526)
T ss_dssp             HH--HH-HHHH-----HHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHGSSHHHH-----HHHHHHHHHCTGGGCHCHHH
T ss_pred             hccccc-chhh-----HHHHHHHHHHhccchhhhhhHHHHHHHHHhccCchHHHH-----HHHHHHhhhhccccccchHH
Confidence            998642 2222     4666888884 4478899999999999998 54433333     45555555544444444555


Q ss_pred             HHHHHhc
Q 044999          402 ESLINFS  408 (461)
Q Consensus       402 ~~L~~l~  408 (461)
                      ..+.++.
T Consensus       399 ~~i~~ll  405 (526)
T PF01602_consen  399 NVIRDLL  405 (526)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            5555443

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.53  E-value=5.2e-13  Score=124.64  Aligned_cols=312  Identities=12%  Similarity=0.048  Sum_probs=222.7

Q ss_pred             CCHHHHHhcCCCCCHHHHHHHHHHHHHHhccChhhHHHHHH----cCCHHHHHHHhcCCChHHHHHHHHHHHHhhCChHH
Q 044999           97 GVINSVLRLFPQSDDSFRTVLVKCLRVFVTFGNENRVIVAR----NGGLEIVIDLLNSCNDGTRRYLLEILSALALLREV  172 (461)
Q Consensus        97 ~~l~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~----~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~  172 (461)
                      .+++.|.++|.+.+...+..+..++.++++++.+.-..-..    .-.+|.++++.+++++.+|..|+.++..+......
T Consensus       128 elLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~q  207 (885)
T KOG2023|consen  128 ELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQ  207 (885)
T ss_pred             hHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCcH
Confidence            35889999999998888999999999999765433222111    12578899999999999999999999887733222


Q ss_pred             HHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhcccCCHHHHHHHHHHHHHHhcCc
Q 044999          173 RRVLICLGGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRARRLLVELGVIPGLVELFHIGDWTTKLVAGNTLGVVAAHV  252 (461)
Q Consensus       173 ~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~  252 (461)
                      .-.+.-...++.++.+-.+.++++|...++++..|......+-.-+-.++++.++...++.+..+-..||.....++..+
T Consensus       208 al~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl~phl~~IveyML~~tqd~dE~VALEACEFwla~aeqp  287 (885)
T KOG2023|consen  208 ALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKLVPHLDNIVEYMLQRTQDVDENVALEACEFWLALAEQP  287 (885)
T ss_pred             HHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhcccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhcCc
Confidence            22222234678888888888999999999999999888777554444668888888888999999999999999999887


Q ss_pred             cchhhhhhc--CCHHHHHHHhCCCC-------------------------------------------------------
Q 044999          253 EYITPVAEA--GAIPLYAELLQGPD-------------------------------------------------------  275 (461)
Q Consensus       253 ~~~~~~~~~--g~i~~L~~ll~~~~-------------------------------------------------------  275 (461)
                      -.+..+...  ..+|.|++-+...+                                                       
T Consensus       288 i~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~  367 (885)
T KOG2023|consen  288 ICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFS  367 (885)
T ss_pred             CcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCccccccccccccccccccccc
Confidence            555555443  56777765443211                                                       


Q ss_pred             -hhHHHHHHHHHHHhccCc--ccHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCchhHHhh--cCCHHHHHHhhcC
Q 044999          276 -STGKEISEDVFCILAVSE--ANANAIAEHLVRILREGDNEANAAAADVLWDLAGYKHSVPVIRN--SGAIPILVNLLRG  350 (461)
Q Consensus       276 -~~~~~~a~~~L~~l~~~~--~~~~~i~~~l~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~--~g~i~~L~~ll~~  350 (461)
                       +.+|+..+.+|--|+..-  +.-..+.|.+-+.|.+..+.+++.++-+++.++..-  .+.++.  ...+|.|+.+|.+
T Consensus       368 dWNLRkCSAAaLDVLanvf~~elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGc--M~g~~p~LpeLip~l~~~L~D  445 (885)
T KOG2023|consen  368 DWNLRKCSAAALDVLANVFGDELLPILLPLLKEHLSSEEWKVREAGVLALGAIAEGC--MQGFVPHLPELIPFLLSLLDD  445 (885)
T ss_pred             cccHhhccHHHHHHHHHhhHHHHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHH--hhhcccchHHHHHHHHHHhcc
Confidence             335555555555554321  111112266666777888999999999999998531  111221  2368889999999


Q ss_pred             CCHHHHHHHHHHHHHhcC---ChhhHHHHHhCCChHHHHHhccCCCHHHHHHHHHHHHHhcCCCc
Q 044999          351 ENDEVREKVSGAIAQLSY---NEADRVALADAGAVPIMIELLHDESEELRDNAAESLINFSEDPL  412 (461)
Q Consensus       351 ~~~~v~~~a~~~L~~l~~---~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~  412 (461)
                      +.+-||.-++|+|.+.+.   ..+..+.+..  .+..|++.+-+++..++++||.+++.+-++..
T Consensus       446 KkplVRsITCWTLsRys~wv~~~~~~~~f~p--vL~~ll~~llD~NK~VQEAAcsAfAtleE~A~  508 (885)
T KOG2023|consen  446 KKPLVRSITCWTLSRYSKWVVQDSRDEYFKP--VLEGLLRRLLDSNKKVQEAACSAFATLEEEAG  508 (885)
T ss_pred             CccceeeeeeeeHhhhhhhHhcCChHhhhHH--HHHHHHHHHhcccHHHHHHHHHHHHHHHHhcc
Confidence            999999999999999887   2232233322  34555555568999999999999999976654

>PTZ00429 beta-adaptin; Provisional

Probab=99.48  E-value=5.7e-10  Score=111.39  Aligned_cols=328  Identities=12%  Similarity=0.027  Sum_probs=211.6

Q ss_pred             cHHHhHHHHHHHhhcCCHHHHHHHHHHHHhhcCCCchhHHHhhHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHhcCC
Q 044999            7 NWEEAFNRFEQAVVSGSEALQVKALTKLARVSKFAPQDILAATIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQAD   86 (461)
Q Consensus         7 ~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~la~~~~~~~l~~~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~   86 (461)
                      +....++..++++.+.|..+|...-..+.+.+...+ +...-++..+.+-+.+      .+|.++..|+++|+++-.  +
T Consensus        65 DvS~LF~dVvk~~~S~d~elKKLvYLYL~~ya~~~p-elalLaINtl~KDl~d------~Np~IRaLALRtLs~Ir~--~  135 (746)
T PTZ00429         65 DVSYLFVDVVKLAPSTDLELKKLVYLYVLSTARLQP-EKALLAVNTFLQDTTN------SSPVVRALAVRTMMCIRV--S  135 (746)
T ss_pred             CchHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccCh-HHHHHHHHHHHHHcCC------CCHHHHHHHHHHHHcCCc--H
Confidence            556677888888888888888888777777772221 1122267777777765      455666668888777775  2


Q ss_pred             chhHHHHHhcCCHHHHHhcCCCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHh
Q 044999           87 GALATEIGQSGVINSVLRLFPQSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLNSCNDGTRRYLLEILSAL  166 (461)
Q Consensus        87 ~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l  166 (461)
                       ...+     ..++.+.+.+.+.++.|++.|+.++.++-..++   ..+.+.|.++.|.+++.+.++.+...|+.+|..+
T Consensus       136 -~i~e-----~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~p---elv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI  206 (746)
T PTZ00429        136 -SVLE-----YTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDM---QLFYQQDFKKDLVELLNDNNPVVASNAAAIVCEV  206 (746)
T ss_pred             -HHHH-----HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCc---ccccccchHHHHHHHhcCCCccHHHHHHHHHHHH
Confidence             2222     235678889999999999999999998876554   3445677889999999999999999999999999


Q ss_pred             hCChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhcccCCHHHHHHHHHHHH
Q 044999          167 ALLREVRRVLICLGGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRARRLLVELGVIPGLVELFHIGDWTTKLVAGNTLG  246 (461)
Q Consensus       167 ~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~  246 (461)
                      .......- -...+.+..++..+..-++..+...+.+|.....  ......  ...+..+...+++.++.+...|+.++.
T Consensus       207 ~~~~~~~l-~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~P--~~~~e~--~~il~~l~~~Lq~~N~AVVl~Aik~il  281 (746)
T PTZ00429        207 NDYGSEKI-ESSNEWVNRLVYHLPECNEWGQLYILELLAAQRP--SDKESA--ETLLTRVLPRMSHQNPAVVMGAIKVVA  281 (746)
T ss_pred             HHhCchhh-HHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcCC--CCcHHH--HHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence            84322221 1233456778888877788888888888755322  222211  236788888899999999999999999


Q ss_pred             HHhcCc--cchhhhhhcCCHHHHHHHhCCCChhHHHHHHHHHHHhccCcccHHHHHHHHHHHh---ccCCHHHHHHHHHH
Q 044999          247 VVAAHV--EYITPVAEAGAIPLYAELLQGPDSTGKEISEDVFCILAVSEANANAIAEHLVRIL---REGDNEANAAAADV  321 (461)
Q Consensus       247 ~l~~~~--~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~l~~ll---~~~~~~~~~~a~~~  321 (461)
                      ++....  +....+. ....+.++.+ .+.+++++..++..+..+.....  ..+.+. ++.+   .++...++...+.+
T Consensus       282 ~l~~~~~~~~~~~~~-~rl~~pLv~L-~ss~~eiqyvaLr~I~~i~~~~P--~lf~~~-~~~Ff~~~~Dp~yIK~~KLeI  356 (746)
T PTZ00429        282 NLASRCSQELIERCT-VRVNTALLTL-SRRDAETQYIVCKNIHALLVIFP--NLLRTN-LDSFYVRYSDPPFVKLEKLRL  356 (746)
T ss_pred             HhcCcCCHHHHHHHH-HHHHHHHHHh-hCCCccHHHHHHHHHHHHHHHCH--HHHHHH-HHhhhcccCCcHHHHHHHHHH
Confidence            987652  1111111 1122455555 35678888888877766544221  111122 2211   12233466666667


Q ss_pred             HHHhhCCCCchhHHhhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcC
Q 044999          322 LWDLAGYKHSVPVIRNSGAIPILVNLLRGENDEVREKVSGAIAQLSY  368 (461)
Q Consensus       322 L~~l~~~~~~~~~l~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~  368 (461)
                      |..++.. +|...++     ..|.++..+.+.+++..++.+++.++.
T Consensus       357 L~~Lane-~Nv~~IL-----~EL~eYa~d~D~ef~r~aIrAIg~lA~  397 (746)
T PTZ00429        357 LLKLVTP-SVAPEIL-----KELAEYASGVDMVFVVEVVRAIASLAI  397 (746)
T ss_pred             HHHHcCc-ccHHHHH-----HHHHHHhhcCCHHHHHHHHHHHHHHHH
Confidence            7666643 2322222     335566666666666666666666665

>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]

Probab=99.47  E-value=7.7e-11  Score=110.62  Aligned_cols=396  Identities=13%  Similarity=0.081  Sum_probs=242.8

Q ss_pred             HHhHHHHHHHhhcCCH--HHHHHHHHHHHhhc--CCCchhHHHh--hHHHHHHhhccCCCCCCCcH-HHHHHHHHHHHHH
Q 044999            9 EEAFNRFEQAVVSGSE--ALQVKALTKLARVS--KFAPQDILAA--TIPILARLLGENNFSGNLTR-SIQQAAAYCLKQI   81 (461)
Q Consensus         9 ~~~~~~l~~ll~~~~~--~~~~~a~~~l~~la--~~~~~~~l~~--~i~~l~~~l~~~~~~~~~~~-~~~~~a~~~L~~l   81 (461)
                      -.+.+.+..+++.++.  ..+...+..++.+.  .......+.+  .++.++++|..      .|+ .+......++.++
T Consensus        50 ~GAv~~Ll~L~s~e~~s~~~k~~~~~llns~f~~eqd~v~svL~~~~ll~Ll~LLs~------sD~~~~le~~l~~lR~I  123 (678)
T KOG1293|consen   50 LGAVELLLALLSLEDGSTELKNGFAVLLNSLFLGEQDKVDSVLRIIELLKLLQLLSE------SDSLNVLEKTLRCLRTI  123 (678)
T ss_pred             hcchHHHHhhccccCCchhhhhhHHHHHHhHHhhccchHHHHHHHhhHHHHHHHhcC------cchHhHHHHHHHHHHHH
Confidence            3566788888887664  44545566667666  4444444444  89999999985      333 3444488899999


Q ss_pred             HhcCCchhHHHHHhc--CCHHHHHhcCCCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhcCCChHHHHHH
Q 044999           82 ASQADGALATEIGQS--GVINSVLRLFPQSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLNSCNDGTRRYL  159 (461)
Q Consensus        82 ~~~~~~~~~~~~~~~--~~l~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a  159 (461)
                      .+. ++..-..+..+  ..+..+.-+++.+...+...-+....+++ ..++.+......|+.+.+.-++.......|..|
T Consensus       124 fet-~~~q~~~~s~~~~sIi~~~s~l~s~~lk~~~~l~~~~~a~~s-~~~~hq~Il~Na~i~ekI~~l~~~~s~~~Rlaa  201 (678)
T KOG1293|consen  124 FET-SKYQDKKMSLHLKSIIVKFSLLYSIELKYISRLDVSRAAHLS-STKDHQLILCNAGILEKINILLMYLSSKLRLAA  201 (678)
T ss_pred             Hhc-ccccccchhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcccc-ccchhhheeccccchhhHHHHHHhhhHHHHHHH
Confidence            885 32222222222  23444444444233332333332333444 455777888888888888777777788899999


Q ss_pred             HHHHH---Hhh-CChHHHH----HHHhcCCHH--HHHHHHcCCCHHHHHHHHHHHHHhhcCchh-----H-HHHHhcC--
Q 044999          160 LEILS---ALA-LLREVRR----VLICLGGLR--YLVEAVSFGSMVSRERACQAIGLLAVTGRA-----R-RLLVELG--  221 (461)
Q Consensus       160 ~~~L~---~l~-~~~~~~~----~~~~~~~l~--~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~-----~-~~~~~~~--  221 (461)
                      +..+.   ++. .++....    ...+.|+.+  .+.+++++++...+..++.++.++.....+     + ..+.+.|  
T Consensus       202 L~~~sr~~~iL~Nn~~~sm~~l~~L~d~~v~~r~~v~rL~k~~~~s~~l~sl~cl~~~~~~s~~~d~l~~~~~~~dmgd~  281 (678)
T KOG1293|consen  202 LLCLSRGDRILRNNPLGSMFLLGLLKDKGVNIRCVVTRLLKDPDFSERLRSLECLVPYLRKSFNYDPLPWWFIFFDMGDS  281 (678)
T ss_pred             HHHhhccceeeecCchhHHHHHHHHhccccchhhhhhhhhhCCCccHHHHHHHHHHHHHhccccccccccceeeccCchH
Confidence            99999   666 4444332    333455555  566777888888888888888877654411     0 0111111  


Q ss_pred             --------------C---------hHHHHH-hcc-cCCHHHHH----HHHH---HHHHHhcC-ccchhhhhhcC------
Q 044999          222 --------------V---------IPGLVE-LFH-IGDWTTKL----VAGN---TLGVVAAH-VEYITPVAEAG------  262 (461)
Q Consensus       222 --------------~---------i~~L~~-ll~-~~~~~~~~----~a~~---~L~~l~~~-~~~~~~~~~~g------  262 (461)
                                    +         +-.+.. ..+ -..+....    ...+   +-+.++.. ++++..+....      
T Consensus       282 ~i~q~~~i~l~~~P~~s~l~~~~~l~c~~a~~~sklq~~~~e~~~~~~~~ellf~~~sl~a~~~~~~~i~l~e~~i~~~~  361 (678)
T KOG1293|consen  282 LIVQYNCIVLMNDPGLSTLDHTNVLFCILARFASKLQLPQHEEATLKTTTELLFICASLAASDEKYRLILLNETLILNHL  361 (678)
T ss_pred             HHHHHhhheeecCCceeehhhhhhhHHHHHHHHHhhhhHHhhhhhhhhHHHHHHHHHHHhhcchhhhHHHhhhhhhhhhh
Confidence                          0         000000 000 00011111    1111   11112222 33332222221      


Q ss_pred             ----------------CHHHHHHHhCCCChhHHHHHHHHHHHhccCc------ccHHHHHHHHHHHhccCCHHHHHHHHH
Q 044999          263 ----------------AIPLYAELLQGPDSTGKEISEDVFCILAVSE------ANANAIAEHLVRILREGDNEANAAAAD  320 (461)
Q Consensus       263 ----------------~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~------~~~~~i~~~l~~ll~~~~~~~~~~a~~  320 (461)
                                      ....+.......+...+..++.++.+++..-      ..+..+.+++++++..++..++..+++
T Consensus       362 ~~~~~i~~~k~~l~~~t~~~l~~~~~~kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp~~~i~~~~lg  441 (678)
T KOG1293|consen  362 EYGLEISLKKEILETTTESHLMCLPPIKDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDPEIMIMGITLG  441 (678)
T ss_pred             hhhcchhHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCcchhHHHHHHH
Confidence                            1111222222235667777777777764321      223334499999999999999999999


Q ss_pred             HHHHhh-CCCCchhHHhhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcC-C-hhhHHHHHhCCChHHHHHhccCCCHHHH
Q 044999          321 VLWDLA-GYKHSVPVIRNSGAIPILVNLLRGENDEVREKVSGAIAQLSY-N-EADRVALADAGAVPIMIELLHDESEELR  397 (461)
Q Consensus       321 ~L~~l~-~~~~~~~~l~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~-~-~~~~~~~~~~~~i~~L~~ll~~~~~~~~  397 (461)
                      +|+|+. .....+..+...|+++.+..++.+.++.++..+.|+|+++.. + ...+..+.+.=.-..+..+.+++++.++
T Consensus       442 ai~NlVmefs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vq  521 (678)
T KOG1293|consen  442 AICNLVMEFSNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQ  521 (678)
T ss_pred             HHHHHHhhcccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHH
Confidence            999999 568889999999999999999999999999999999999999 3 3333444443335667778899999999


Q ss_pred             HHHHHHHHHhcCCCc
Q 044999          398 DNAAESLINFSEDPL  412 (461)
Q Consensus       398 ~~a~~~L~~l~~~~~  412 (461)
                      +.+...|.|+..+..
T Consensus       522 eq~fqllRNl~c~~~  536 (678)
T KOG1293|consen  522 EQCFQLLRNLTCNSR  536 (678)
T ss_pred             HHHHHHHHHhhcCcH
Confidence            999999999988853

>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments

Probab=99.44  E-value=1.3e-10  Score=107.61  Aligned_cols=311  Identities=14%  Similarity=0.128  Sum_probs=224.5

Q ss_pred             CHHHHHhcCCC-CCHHHHHHHHHHHHHHhccChhhHHHHHHc-----CCHHHHHHHhcCCChHHHHHHHHHHHHhhC-Ch
Q 044999           98 VINSVLRLFPQ-SDDSFRTVLVKCLRVFVTFGNENRVIVARN-----GGLEIVIDLLNSCNDGTRRYLLEILSALAL-LR  170 (461)
Q Consensus        98 ~l~~L~~ll~~-~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~-----g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~-~~  170 (461)
                      ....++++++. .++++.+.....+..+...++.....|.+.     .....++.+|...+..+...|+.++..+.. ..
T Consensus        54 y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~~~d~~i~~~a~~iLt~l~~~~~  133 (429)
T cd00256          54 YVKTFVNLLSQIDKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLNRQDQFIVHMSFSILAKLACFGL  133 (429)
T ss_pred             HHHHHHHHHhccCcHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHcCCchhHHHHHHHHHHHHHhcCc
Confidence            45667777764 556667777777778887776655666654     567778889998888999999999999873 22


Q ss_pred             HHHHHHHhcCCHHHHHHHHcCC-CHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhcccC--CHHHHHHHHHHHHH
Q 044999          171 EVRRVLICLGGLRYLVEAVSFG-SMVSRERACQAIGLLAVTGRARRLLVELGVIPGLVELFHIG--DWTTKLVAGNTLGV  247 (461)
Q Consensus       171 ~~~~~~~~~~~l~~l~~~l~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~--~~~~~~~a~~~L~~  247 (461)
                      .........-....+...+.+. +...+..++.++..+...++.|..+.+.++++.|+.+++..  +...+..++-+++-
T Consensus       134 ~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~lWl  213 (429)
T cd00256         134 AKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFVLADGVPTLVKLLSNATLGFQLQYQSIFCIWL  213 (429)
T ss_pred             cccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHHHccCHHHHHHHHhhccccHHHHHHHHHHHHH
Confidence            2111111111233455555544 46788899999999999999999999999999999999853  56888999999999


Q ss_pred             HhcCccchhhhhhcCCHHHHHHHhCCC-ChhHHHHHHHHHHHhccCcc-------cHHHHH----HHHHHHhccC---CH
Q 044999          248 VAAHVEYITPVAEAGAIPLYAELLQGP-DSTGKEISEDVFCILAVSEA-------NANAIA----EHLVRILREG---DN  312 (461)
Q Consensus       248 l~~~~~~~~~~~~~g~i~~L~~ll~~~-~~~~~~~a~~~L~~l~~~~~-------~~~~i~----~~l~~ll~~~---~~  312 (461)
                      ++.+++....+...+.++.++++++.. .+.+.+.++.+|.|+...+.       ....++    +.+++.|...   |+
T Consensus       214 LSF~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~~l~~L~~rk~~De  293 (429)
T cd00256         214 LTFNPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLKTLQSLEQRKYDDE  293 (429)
T ss_pred             HhccHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChHHHHHHHhcCCCCcH
Confidence            999977777777789999999999866 57788899999999965331       122333    6666666543   45


Q ss_pred             HHHHHH-------HHHHHHhhCC---------------C---------CchhHHhhcC--CHHHHHHhhc-CCCHHHHHH
Q 044999          313 EANAAA-------ADVLWDLAGY---------------K---------HSVPVIRNSG--AIPILVNLLR-GENDEVREK  358 (461)
Q Consensus       313 ~~~~~a-------~~~L~~l~~~---------------~---------~~~~~l~~~g--~i~~L~~ll~-~~~~~v~~~  358 (461)
                      ++.+..       -.-+..+++.               |         +|...+-+.+  .+..|++++. +.++.+..-
T Consensus       294 dL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~EN~~kf~~~~~~llk~L~~iL~~s~d~~~laV  373 (429)
T cd00256         294 DLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWRENADRLNEKNYELLKILIHLLETSVDPIILAV  373 (429)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHHHHHHHHHhcchHHHHHHHHHHhcCCCcceeeh
Confidence            433211       1111222211               1         2233333332  3678889985 456778888


Q ss_pred             HHHHHHHhcC-ChhhHHHHHhCCChHHHHHhccCCCHHHHHHHHHHHHHhc
Q 044999          359 VSGAIAQLSY-NEADRVALADAGAVPIMIELLHDESEELRDNAAESLINFS  408 (461)
Q Consensus       359 a~~~L~~l~~-~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~  408 (461)
                      ||.=++.+++ .|..+..+.+.|+=..+++++.+++++++.+|..++..|.
T Consensus       374 Ac~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm  424 (429)
T cd00256         374 ACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQKLM  424 (429)
T ss_pred             hhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence            8888999999 8999999999999999999999999999999999998774

The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.

>PTZ00429 beta-adaptin; Provisional

Probab=99.42  E-value=1e-08  Score=102.60  Aligned_cols=287  Identities=16%  Similarity=0.132  Sum_probs=183.2

Q ss_pred             hHHHHHHHhhcCCHHHHHHHHHHHHhhcCCCchhHHHh-hHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHhcCCchh
Q 044999           11 AFNRFEQAVVSGSEALQVKALTKLARVSKFAPQDILAA-TIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQADGAL   89 (461)
Q Consensus        11 ~~~~l~~ll~~~~~~~~~~a~~~l~~la~~~~~~~l~~-~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~   89 (461)
                      .++.|.+-+.+.++.+|-.|++.++.+-.    ..+.+ .++.+.+.+..      .+|-+++.|+.++.++... ++  
T Consensus       106 aINtl~KDl~d~Np~IRaLALRtLs~Ir~----~~i~e~l~~~lkk~L~D------~~pYVRKtAalai~Kly~~-~p--  172 (746)
T PTZ00429        106 AVNTFLQDTTNSSPVVRALAVRTMMCIRV----SSVLEYTLEPLRRAVAD------PDPYVRKTAAMGLGKLFHD-DM--  172 (746)
T ss_pred             HHHHHHHHcCCCCHHHHHHHHHHHHcCCc----HHHHHHHHHHHHHHhcC------CCHHHHHHHHHHHHHHHhh-Cc--
Confidence            45777888889999999999999988772    12333 67777777765      5678888899999999874 33  


Q ss_pred             HHHHHhcCCHHHHHhcCCCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHhh-C
Q 044999           90 ATEIGQSGVINSVLRLFPQSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLNSCNDGTRRYLLEILSALA-L  168 (461)
Q Consensus        90 ~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~-~  168 (461)
                       +.+.+.+.++.|.+++.+.++.|...|..++..+...++..  .-...+.+..++..+...++..+...+.+|.... .
T Consensus       173 -elv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~--l~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~P~  249 (746)
T PTZ00429        173 -QLFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEK--IESSNEWVNRLVYHLPECNEWGQLYILELLAAQRPS  249 (746)
T ss_pred             -ccccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchh--hHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcCCC
Confidence             23445678899999999999999999999999887654322  2223445667777787778888888888886654 2


Q ss_pred             ChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCch-h-HHHHHhcCChHHHHHhcccCCHHHHHHHHHHHH
Q 044999          169 LREVRRVLICLGGLRYLVEAVSFGSMVSRERACQAIGLLAVTGR-A-RRLLVELGVIPGLVELFHIGDWTTKLVAGNTLG  246 (461)
Q Consensus       169 ~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~-~-~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~  246 (461)
                      +.+..     ...+..+...|++.++.+...|++++.+++...+ . ..... ....+.++.+ .+.+++++..++..+.
T Consensus       250 ~~~e~-----~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~~~~~~~~~-~rl~~pLv~L-~ss~~eiqyvaLr~I~  322 (746)
T PTZ00429        250 DKESA-----ETLLTRVLPRMSHQNPAVVMGAIKVVANLASRCSQELIERCT-VRVNTALLTL-SRRDAETQYIVCKNIH  322 (746)
T ss_pred             CcHHH-----HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcCCHHHHHHHH-HHHHHHHHHh-hCCCccHHHHHHHHHH
Confidence            22211     2357778888999999999999999999976532 2 11111 1122455555 3556778887777766


Q ss_pred             HHhcCccchhhhhhcCCHHHHHHHhCCCChhHHHHHHHHHHHhccCcccHHHHHHHHHHHhccCCHHHHHHHHHHHHHhh
Q 044999          247 VVAAHVEYITPVAEAGAIPLYAELLQGPDSTGKEISEDVFCILAVSEANANAIAEHLVRILREGDNEANAAAADVLWDLA  326 (461)
Q Consensus       247 ~l~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~l~~ll~~~~~~~~~~a~~~L~~l~  326 (461)
                      .+....   ..+.... +..+.-... +...++...+.+|..++. +.+...+...|.....+.+.+.+..++.+++.++
T Consensus       323 ~i~~~~---P~lf~~~-~~~Ff~~~~-Dp~yIK~~KLeIL~~Lan-e~Nv~~IL~EL~eYa~d~D~ef~r~aIrAIg~lA  396 (746)
T PTZ00429        323 ALLVIF---PNLLRTN-LDSFYVRYS-DPPFVKLEKLRLLLKLVT-PSVAPEILKELAEYASGVDMVFVVEVVRAIASLA  396 (746)
T ss_pred             HHHHHC---HHHHHHH-HHhhhcccC-CcHHHHHHHHHHHHHHcC-cccHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHH
Confidence            655431   1111111 122211122 223456666666665542 3333444444555555555556666666666655

>cd00020 ARM Armadillo/beta-catenin-like repeats

Probab=99.39  E-value=2.1e-11  Score=95.34  Aligned_cols=117  Identities=25%  Similarity=0.288  Sum_probs=108.4

Q ss_pred             HHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHhhCC-hHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCch
Q 044999          134 IVARNGGLEIVIDLLNSCNDGTRRYLLEILSALALL-REVRRVLICLGGLRYLVEAVSFGSMVSRERACQAIGLLAVTGR  212 (461)
Q Consensus       134 ~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~  212 (461)
                      .+.+.|+++.+++++.++++.++..++.+|.+++.+ ++....+.+.|+++.+++++.++++.++..++++|++++...+
T Consensus         2 ~~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~   81 (120)
T cd00020           2 AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPE   81 (120)
T ss_pred             hHHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcH
Confidence            366889999999999999999999999999999955 8888899999999999999999999999999999999999887


Q ss_pred             h-HHHHHhcCChHHHHHhcccCCHHHHHHHHHHHHHHhc
Q 044999          213 A-RRLLVELGVIPGLVELFHIGDWTTKLVAGNTLGVVAA  250 (461)
Q Consensus       213 ~-~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~  250 (461)
                      . ...+.+.|+++.+++++.+.+..+++.++++|.+++.
T Consensus        82 ~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~~  120 (120)
T cd00020          82 DNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS  120 (120)
T ss_pred             HHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhhC
Confidence            6 7778889999999999999999999999999999863

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.

>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.38  E-value=1.1e-10  Score=112.27  Aligned_cols=214  Identities=14%  Similarity=0.124  Sum_probs=173.5

Q ss_pred             hHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHhcCCC-CCHHHHHHHHHHHHHHhcc
Q 044999           49 TIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQADGALATEIGQSGVINSVLRLFPQ-SDDSFRTVLVKCLRVFVTF  127 (461)
Q Consensus        49 ~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~ll~~-~~~~~~~~~~~~l~~l~~~  127 (461)
                      -+++|+.=|+.    . .|+..|..|+.-|+.+...|+++.-..+--.-.+|.|+.+|++ .+.++...|++++.+|+.-
T Consensus       168 k~kkLL~gL~~----~-~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~ev  242 (1051)
T KOG0168|consen  168 KAKKLLQGLQA----E-SDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEV  242 (1051)
T ss_pred             HHHHHHHhccc----c-CChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhh
Confidence            46677777774    3 3788999999999999988787776666666789999999996 4789999999999999998


Q ss_pred             ChhhHHHHHHcCCHHHHHH-HhcCCChHHHHHHHHHHHHhhCChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHH
Q 044999          128 GNENRVIVARNGGLEIVID-LLNSCNDGTRRYLLEILSALALLREVRRVLICLGGLRYLVEAVSFGSMVSRERACQAIGL  206 (461)
Q Consensus       128 ~~~~~~~~~~~g~i~~L~~-ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~  206 (461)
                      -+.....+++.+++|.|++ ++.-..-++.+.++.+|..++..  .-..+.+.|++-..+.++..-+...|+.|+.+..|
T Consensus       243 lP~S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~--H~~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN  320 (1051)
T KOG0168|consen  243 LPRSSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRR--HPKAILQAGALSAVLSYLDFFSIHAQRVALAIAAN  320 (1051)
T ss_pred             ccchhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhh--ccHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8888899999999999988 56666778999999999999832  23457889999999999998899999999999999


Q ss_pred             hhcCchh--HHHHHhcCChHHHHHhcccCCHHHHHHHHHHHHHHhcC----ccchhhhhhcCCHHHHHHHh
Q 044999          207 LAVTGRA--RRLLVELGVIPGLVELFHIGDWTTKLVAGNTLGVVAAH----VEYITPVAEAGAIPLYAELL  271 (461)
Q Consensus       207 l~~~~~~--~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~----~~~~~~~~~~g~i~~L~~ll  271 (461)
                      +|..-..  -..+++  .+|.|..+|+..+....+.++-++..++..    ++.-+++..+|.+....+++
T Consensus       321 ~Cksi~sd~f~~v~e--alPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLl  389 (1051)
T KOG0168|consen  321 CCKSIRSDEFHFVME--ALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLL  389 (1051)
T ss_pred             HHhcCCCccchHHHH--HHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHH
Confidence            9876543  455555  799999999999999999999999988765    33334555556665555554

>cd00020 ARM Armadillo/beta-catenin-like repeats

Probab=99.36  E-value=3.3e-11  Score=94.14  Aligned_cols=117  Identities=23%  Similarity=0.279  Sum_probs=108.0

Q ss_pred             HHHhcCCHHHHHhcCCCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHhhCC-h
Q 044999           92 EIGQSGVINSVLRLFPQSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLNSCNDGTRRYLLEILSALALL-R  170 (461)
Q Consensus        92 ~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~-~  170 (461)
                      .+.+.|+++.++++++++++.++..++.++.+++...++....+.+.|+++.+++++.++++.++..++.+|.+++.+ +
T Consensus         2 ~~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~   81 (120)
T cd00020           2 AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPE   81 (120)
T ss_pred             hHHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcH
Confidence            456889999999999999999999999999999988789999999999999999999999999999999999999954 4


Q ss_pred             HHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhh
Q 044999          171 EVRRVLICLGGLRYLVEAVSFGSMVSRERACQAIGLLA  208 (461)
Q Consensus       171 ~~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~  208 (461)
                      .....+.+.|+++.+++++.+.+..++..++.+|.+++
T Consensus        82 ~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~  119 (120)
T cd00020          82 DNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA  119 (120)
T ss_pred             HHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence            66777788999999999999999999999999999986

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.33  E-value=4.3e-10  Score=105.59  Aligned_cols=384  Identities=16%  Similarity=0.170  Sum_probs=245.8

Q ss_pred             HHHHHhhcCCHHHHHHHHHHHHhhcCCCchhHHHhhHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHhcCCchhHHHH
Q 044999           14 RFEQAVVSGSEALQVKALTKLARVSKFAPQDILAATIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQADGALATEI   93 (461)
Q Consensus        14 ~l~~ll~~~~~~~~~~a~~~l~~la~~~~~~~l~~~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~   93 (461)
                      .+++-+.+.++.+|.-....+..+++.......-+.+|.|.++|.+      +|...+..|..+|..++++.........
T Consensus        94 ~~l~~lgd~~~lIr~tvGivITTI~s~~~~~~wpelLp~L~~~L~s------~d~n~~EgA~~AL~KIcEDsa~~lds~~  167 (885)
T KOG2023|consen   94 ECLHGLGDASPLIRATVGIVITTIASTGGLQHWPELLPQLCELLDS------PDYNTCEGAFGALQKICEDSAQFLDSDV  167 (885)
T ss_pred             HHHhhccCchHHHHhhhhheeeeeecccccccchhHHHHHHHHhcC------CcccccchhHHHHHHHHhhhHHHHhhhc
Confidence            3445555666666655555555565444433445599999999987      2333677799999999996222222222


Q ss_pred             Hh---cCCHHHHHhcCCCCCHHHHHHHHHHHHHHhccChhhHHHHH-HcCCHHHHHHHhcCCChHHHHHHHHHHHHhhCC
Q 044999           94 GQ---SGVINSVLRLFPQSDDSFRTVLVKCLRVFVTFGNENRVIVA-RNGGLEIVIDLLNSCNDGTRRYLLEILSALALL  169 (461)
Q Consensus        94 ~~---~~~l~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~-~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~  169 (461)
                      ..   .-.+|.+++..+++++.+|..+..|+-.+.-...  +..+. -...++.+..+..+.++++|...|.++.-+...
T Consensus       168 ~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~--qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llev  245 (885)
T KOG2023|consen  168 LTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQT--QALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEV  245 (885)
T ss_pred             ccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCc--HHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHh
Confidence            11   1258999999999999999999999986654321  22222 123466677777888999999999999988744


Q ss_pred             hHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCchhHHHHHh--cCChHHHHHhcccCC-------------
Q 044999          170 REVRRVLICLGGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRARRLLVE--LGVIPGLVELFHIGD-------------  234 (461)
Q Consensus       170 ~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~--~~~i~~L~~ll~~~~-------------  234 (461)
                      ...+-.=.=.++++.++...++.++++--.|+.....++..+-.+..+..  ...+|.|+.-+..++             
T Consensus       246 r~dkl~phl~~IveyML~~tqd~dE~VALEACEFwla~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~  325 (885)
T KOG2023|consen  246 RPDKLVPHLDNIVEYMLQRTQDVDENVALEACEFWLALAEQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDE  325 (885)
T ss_pred             cHHhcccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccc
Confidence            43332222235788888888889999999999999999998854555443  345565554443111             


Q ss_pred             -------------------------------------------HHHHHHHHHHHHHHhcCccchhhhhhcCC----HHHH
Q 044999          235 -------------------------------------------WTTKLVAGNTLGVVAAHVEYITPVAEAGA----IPLY  267 (461)
Q Consensus       235 -------------------------------------------~~~~~~a~~~L~~l~~~~~~~~~~~~~g~----i~~L  267 (461)
                                                                 ...|.-.+.+|--|+.       +.....    +|.|
T Consensus       326 ~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLan-------vf~~elL~~l~PlL  398 (885)
T KOG2023|consen  326 SVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLAN-------VFGDELLPILLPLL  398 (885)
T ss_pred             cCCchhhhccchhhhchhccCccccccccccccccccccccccccHhhccHHHHHHHHH-------hhHHHHHHHHHHHH
Confidence                                                       1122222223333332       112222    4555


Q ss_pred             HHHhCCCChhHHHHHHHHHHHhccCc-----ccHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhCC---CCchhHHhhcC
Q 044999          268 AELLQGPDSTGKEISEDVFCILAVSE-----ANANAIAEHLVRILREGDNEANAAAADVLWDLAGY---KHSVPVIRNSG  339 (461)
Q Consensus       268 ~~ll~~~~~~~~~~a~~~L~~l~~~~-----~~~~~i~~~l~~ll~~~~~~~~~~a~~~L~~l~~~---~~~~~~l~~~g  339 (461)
                      -+.|.++++.+++.+.-+|+.++..-     ..-.+++|.++.+|.+..+-+|.-.+|+|...+..   .+..+.+.  .
T Consensus       399 k~~L~~~~W~vrEagvLAlGAIAEGcM~g~~p~LpeLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~~~~f~--p  476 (885)
T KOG2023|consen  399 KEHLSSEEWKVREAGVLALGAIAEGCMQGFVPHLPELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSRDEYFK--P  476 (885)
T ss_pred             HHHcCcchhhhhhhhHHHHHHHHHHHhhhcccchHHHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcCChHhhhH--H
Confidence            56666778999999999999886432     22345569999999999999999999999988853   22222222  1


Q ss_pred             CHHHHHHhhcCCCHHHHHHHHHHHHHhcCChhhHHHHHh--CCChHHHHHhc---cCCCHHHHHHHHHHHHHhcCCCcch
Q 044999          340 AIPILVNLLRGENDEVREKVSGAIAQLSYNEADRVALAD--AGAVPIMIELL---HDESEELRDNAAESLINFSEDPLQH  414 (461)
Q Consensus       340 ~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~--~~~i~~L~~ll---~~~~~~~~~~a~~~L~~l~~~~~~~  414 (461)
                      ++..|++.+-+++..||++|+.+++.+-...  ...++.  ..++..|+..+   +.++--+..-|.++|+.=+.+.-+.
T Consensus       477 vL~~ll~~llD~NK~VQEAAcsAfAtleE~A--~~eLVp~l~~IL~~l~~af~kYQ~KNLlILYDAIgtlAdsvg~~Ln~  554 (885)
T KOG2023|consen  477 VLEGLLRRLLDSNKKVQEAACSAFATLEEEA--GEELVPYLEYILDQLVFAFGKYQKKNLLILYDAIGTLADSVGHALNK  554 (885)
T ss_pred             HHHHHHHHHhcccHHHHHHHHHHHHHHHHhc--cchhHHHHHHHHHHHHHHHHHHhhcceehHHHHHHHHHHHHHHhcCc
Confidence            3444555566889999999999998887622  122221  11233444433   3456667777888887776555444


Q ss_pred             HH
Q 044999          415 ER  416 (461)
Q Consensus       415 ~~  416 (461)
                      ++
T Consensus       555 ~~  556 (885)
T KOG2023|consen  555 PA  556 (885)
T ss_pred             HH
Confidence            44

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.28  E-value=1.4e-08  Score=97.39  Aligned_cols=329  Identities=15%  Similarity=0.165  Sum_probs=239.6

Q ss_pred             HHhhHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHhcCCC--CCHHHHHHHHHHHHH
Q 044999           46 LAATIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQADGALATEIGQSGVINSVLRLFPQ--SDDSFRTVLVKCLRV  123 (461)
Q Consensus        46 l~~~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~ll~~--~~~~~~~~~~~~l~~  123 (461)
                      -.+.|++|++.+.+    . .-++.++.|+.+|..++.    ..+..+... |++.++..|..  .|++....+...+++
T Consensus        20 ~aETI~kLcDRves----s-TL~eDRR~A~rgLKa~sr----kYR~~Vga~-Gmk~li~vL~~D~~D~E~ik~~LdTl~i   89 (970)
T KOG0946|consen   20 AAETIEKLCDRVES----S-TLLEDRRDAVRGLKAFSR----KYREEVGAQ-GMKPLIQVLQRDYMDPEIIKYALDTLLI   89 (970)
T ss_pred             HHhHHHHHHHHHhh----c-cchhhHHHHHHHHHHHHH----HHHHHHHHc-ccHHHHHHHhhccCCHHHHHHHHHHHHH
Confidence            34489999999986    3 346678889999999998    355555444 56888888875  467888888888887


Q ss_pred             HhccCh------hhH-----------HHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHhh--CChHHHHHHHhc-CCHH
Q 044999          124 FVTFGN------ENR-----------VIVARNGGLEIVIDLLNSCNDGTRRYLLEILSALA--LLREVRRVLICL-GGLR  183 (461)
Q Consensus       124 l~~~~~------~~~-----------~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~--~~~~~~~~~~~~-~~l~  183 (461)
                      +..+++      ..+           ..+...+.+..++..++..|..+|.+++..+.++.  ...+.+..+... -++.
T Consensus        90 l~~~dd~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS  169 (970)
T KOG0946|consen   90 LTSHDDSPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGIS  169 (970)
T ss_pred             HHhcCcchhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHH
Confidence            776542      111           12234577888999999999999999999999987  455667776664 4999


Q ss_pred             HHHHHHcCCCHHHHHHHHHHHHHhhcCchh-HHHHHhcCChHHHHHhcccC----CHHHHHHHHHHHHHHhcC-ccchhh
Q 044999          184 YLVEAVSFGSMVSRERACQAIGLLAVTGRA-RRLLVELGVIPGLVELFHIG----DWTTKLVAGNTLGVVAAH-VEYITP  257 (461)
Q Consensus       184 ~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~-~~~~~~~~~i~~L~~ll~~~----~~~~~~~a~~~L~~l~~~-~~~~~~  257 (461)
                      .++.+|.+..+.+|..++..|..++..... ++.++-.+++..|+.++..+    ..-+.+.++..|-||-.+ ..++..
T Consensus       170 ~lmdlL~DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~  249 (970)
T KOG0946|consen  170 KLMDLLRDSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNF  249 (970)
T ss_pred             HHHHHHhhhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhH
Confidence            999999999999999999999999999988 66666688999999999843    235788899999999887 788899


Q ss_pred             hhhcCCHHHHHHHhCCC---ChhHHHHHHHHHHHhccCcccHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhCC------
Q 044999          258 VAEAGAIPLYAELLQGP---DSTGKEISEDVFCILAVSEANANAIAEHLVRILREGDNEANAAAADVLWDLAGY------  328 (461)
Q Consensus       258 ~~~~g~i~~L~~ll~~~---~~~~~~~a~~~L~~l~~~~~~~~~i~~~l~~ll~~~~~~~~~~a~~~L~~l~~~------  328 (461)
                      +.+.+.+|.|..+|...   +.++..+...-..|                          ...++.++..+...      
T Consensus       250 FrE~~~i~rL~klL~~f~~~d~Ev~~W~~Qrv~N--------------------------v~~~Lqivr~lVsP~Nt~~~  303 (970)
T KOG0946|consen  250 FREGSYIPRLLKLLSVFEFGDGEVFGWSTQRVQN--------------------------VIEALQIVRSLVSPGNTSSI  303 (970)
T ss_pred             HhccccHHHHHhhcCcccccCcccccccHHHHHH--------------------------HHHHHHHHHHhcCCCCcHHH
Confidence            99999999999887543   32332222211111                          11444455555431      


Q ss_pred             -CCchhHHhhcCCHHHHHHhhcCC--CHHHHHHHHHHHHHhcC-ChhhHHHHHhCCC------hHH----HHHhccC-CC
Q 044999          329 -KHSVPVIRNSGAIPILVNLLRGE--NDEVREKVSGAIAQLSY-NEADRVALADAGA------VPI----MIELLHD-ES  393 (461)
Q Consensus       329 -~~~~~~l~~~g~i~~L~~ll~~~--~~~v~~~a~~~L~~l~~-~~~~~~~~~~~~~------i~~----L~~ll~~-~~  393 (461)
                       ..++..+...+++..|..++.++  ..+++..+..+++++.+ +..++..+.+-..      .|.    ++.+..+ ..
T Consensus       304 ~~q~qk~l~ss~ll~~Lc~il~~~~vp~dIltesiitvAevVRgn~~nQ~~F~~v~~p~~~~Pr~sivvllmsm~ne~q~  383 (970)
T KOG0946|consen  304 THQNQKALVSSHLLDVLCTILMHPGVPADILTESIITVAEVVRGNARNQDEFADVTAPSIPNPRPSIVVLLMSMFNEKQP  383 (970)
T ss_pred             HHHHHHHHHHcchHHHHHHHHcCCCCcHhHHHHHHHHHHHHHHhchHHHHHHhhccCCCCCCCccchhHHHHHHHhccCC
Confidence             24456778899999999998765  46788999999999999 8888888875321      122    3333344 45


Q ss_pred             HHHHHHHHHHHHHhcCC
Q 044999          394 EELRDNAAESLINFSED  410 (461)
Q Consensus       394 ~~~~~~a~~~L~~l~~~  410 (461)
                      ...|..+..++.....+
T Consensus       384 ~~lRcAv~ycf~s~l~d  400 (970)
T KOG0946|consen  384 FSLRCAVLYCFRSYLYD  400 (970)
T ss_pred             chHHHHHHHHHHHHHhc
Confidence            56677777777666544

>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=99.27  E-value=7.1e-09  Score=92.86  Aligned_cols=312  Identities=16%  Similarity=0.151  Sum_probs=220.0

Q ss_pred             hHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHhcCCchhHHHHHh-------cCCHHHHHhcCCCCCHHHHHHHHHHH
Q 044999           49 TIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQADGALATEIGQ-------SGVINSVLRLFPQSDDSFRTVLVKCL  121 (461)
Q Consensus        49 ~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~-------~~~l~~L~~ll~~~~~~~~~~~~~~l  121 (461)
                      .+.+++.++..     .+.++..+.....+..+... +. .+..++.       .-.-...+++|...++-+.....+.+
T Consensus        66 ~v~~fi~LlS~-----~~kdd~v~yvL~li~DmLs~-d~-sr~~lf~~~a~~~k~~~~~~fl~ll~r~d~~iv~~~~~Il  138 (442)
T KOG2759|consen   66 YVKTFINLLSH-----IDKDDTVQYVLTLIDDMLSE-DR-SRVDLFHDYAHKLKRTEWLSFLNLLNRQDTFIVEMSFRIL  138 (442)
T ss_pred             HHHHHHHHhch-----hhhHHHHHHHHHHHHHHHhh-Cc-hHHHHHHHHHHhhhccchHHHHHHHhcCChHHHHHHHHHH
Confidence            67788888874     23344556566666666663 32 2222221       11246678888888988888788888


Q ss_pred             HHHhccChhhHHHHHHcC-CHHHHHHHhcC-CChHHHHHHHHHHHHhhCChHHHHHHHhcCCHHHHHHHHcCC--CHHHH
Q 044999          122 RVFVTFGNENRVIVARNG-GLEIVIDLLNS-CNDGTRRYLLEILSALALLREVRRVLICLGGLRYLVEAVSFG--SMVSR  197 (461)
Q Consensus       122 ~~l~~~~~~~~~~~~~~g-~i~~L~~ll~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~~l~~~--~~~~~  197 (461)
                      ..++...... ....+.. ....+...+.+ .+++....+.++|..+...++.|-.++..+++..++..+.+.  +-.++
T Consensus       139 s~la~~g~~~-~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~eyR~~~v~adg~~~l~~~l~s~~~~~QlQ  217 (442)
T KOG2759|consen  139 SKLACFGNCK-MELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRVDEYRYAFVIADGVSLLIRILASTKCGFQLQ  217 (442)
T ss_pred             HHHHHhcccc-ccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcCcchhheeeecCcchhhHHHHhccCcchhHH
Confidence            8777533211 1111111 12234445555 556788889999999999999999999999999999998432  67999


Q ss_pred             HHHHHHHHHhhcCchhHHHHHhcCChHHHHHhcccC-CHHHHHHHHHHHHHHhcCc-------cchhhhhhcCCHHHHHH
Q 044999          198 ERACQAIGLLAVTGRARRLLVELGVIPGLVELFHIG-DWTTKLVAGNTLGVVAAHV-------EYITPVAEAGAIPLYAE  269 (461)
Q Consensus       198 ~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~-~~~~~~~a~~~L~~l~~~~-------~~~~~~~~~g~i~~L~~  269 (461)
                      .+.+.+++-|+.++...+.+...+.++.|.++++.. .+.+.+.++.++.|+....       +....++..++.+.+-.
T Consensus       218 YqsifciWlLtFn~~~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~~~v~k~l~~  297 (442)
T KOG2759|consen  218 YQSIFCIWLLTFNPHAAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVLCKVLKTLQS  297 (442)
T ss_pred             HHHHHHHHHhhcCHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCchHHHHH
Confidence            999999999999999988888899999999999954 6678888999999998774       23345555665555444


Q ss_pred             HhCC--CChhHHHHHHH-------HHHHhccCcccHHHHH-------------------------------HHHHHHhcc
Q 044999          270 LLQG--PDSTGKEISED-------VFCILAVSEANANAIA-------------------------------EHLVRILRE  309 (461)
Q Consensus       270 ll~~--~~~~~~~~a~~-------~L~~l~~~~~~~~~i~-------------------------------~~l~~ll~~  309 (461)
                      +-..  .|+++....-.       -...|+..++...++.                               ..|+.+|.+
T Consensus       298 L~~rkysDEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~FW~eNa~rlnennyellkiL~~lLe~  377 (442)
T KOG2759|consen  298 LEERKYSDEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEKFWRENADRLNENNYELLKILIKLLET  377 (442)
T ss_pred             HHhcCCCcHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCccccccchHHHhHHHHhhccHHHHHHHHHHHhc
Confidence            4432  25554432221       1222333333333222                               778888866


Q ss_pred             C-CHHHHHHHHHHHHHhhC-CCCchhHHhhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcC
Q 044999          310 G-DNEANAAAADVLWDLAG-YKHSVPVIRNSGAIPILVNLLRGENDEVREKVSGAIAQLSY  368 (461)
Q Consensus       310 ~-~~~~~~~a~~~L~~l~~-~~~~~~~l~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~  368 (461)
                      . +|.+..-|+.=++...+ +|+.+..+.+.|+=+.++++++.++++|+-.|+.|+..|..
T Consensus       378 s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm~  438 (442)
T KOG2759|consen  378 SNDPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHEDPEVRYHALLAVQKLMV  438 (442)
T ss_pred             CCCCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCCCchHHHHHHHHHHHHHh
Confidence            5 58888999999999995 69999999999999999999999999999999988876643

>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.25  E-value=3.8e-08  Score=94.30  Aligned_cols=376  Identities=13%  Similarity=0.069  Sum_probs=240.0

Q ss_pred             CHHHHHHHHHHHHhhc--CCC-chhHHHh------------hHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHhcCCc
Q 044999           23 SEALQVKALTKLARVS--KFA-PQDILAA------------TIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQADG   87 (461)
Q Consensus        23 ~~~~~~~a~~~l~~la--~~~-~~~~l~~------------~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~   87 (461)
                      ....|..|...|.|-.  ++. .+.+..+            +=..+++.|.+      ..|..-..|+.++..++.-.-+
T Consensus        50 ~~~~R~~AGL~LKN~L~akd~~~k~~~~qRWl~l~~e~reqVK~~il~tL~~------~ep~~~s~Aaq~va~IA~~ElP  123 (859)
T KOG1241|consen   50 SDVARMAAGLQLKNSLTAKDPERKQQYQQRWLQLPAEIREQVKNNILRTLGS------PEPRRPSSAAQCVAAIACIELP  123 (859)
T ss_pred             cHHHHHHHhHHHhhhhccCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCC------CCCCccchHHHHHHHHHHhhCc
Confidence            4567777777887755  332 2222222            22335566764      2233445588999999873111


Q ss_pred             hhHHHHHhcCCHHHHHhcCCCCCHH-HHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhcC--CChHHHHHHHHHHH
Q 044999           88 ALATEIGQSGVINSVLRLFPQSDDS-FRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLNS--CNDGTRRYLLEILS  164 (461)
Q Consensus        88 ~~~~~~~~~~~l~~L~~ll~~~~~~-~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll~~--~~~~~~~~a~~~L~  164 (461)
                      .++    =.+.+..+++......+. ++..++.++..++.+-......-..+.++..++.-...  ++..+|..|+.+|.
T Consensus       124 ~n~----wp~li~~lv~nv~~~~~~~~k~~slealGyice~i~pevl~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~  199 (859)
T KOG1241|consen  124 QNQ----WPELIVTLVSNVGEEQASMVKESSLEALGYICEDIDPEVLEQQSNDILTAIVQGMRKEETSAAVRLAALNALY  199 (859)
T ss_pred             hhh----CHHHHHHHHHhcccccchHHHHHHHHHHHHHHccCCHHHHHHHHhHHHHHHHhhccccCCchhHHHHHHHHHH
Confidence            111    012345555555444444 67888888888887543222222234455556654443  35589999999998


Q ss_pred             HhhCCh--HHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCchh--HHHHHhcCChHHHHHhcccCCHHHHHH
Q 044999          165 ALALLR--EVRRVLICLGGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRA--RRLLVELGVIPGLVELFHIGDWTTKLV  240 (461)
Q Consensus       165 ~l~~~~--~~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~--~~~~~~~~~i~~L~~ll~~~~~~~~~~  240 (461)
                      +-.+..  .+....-+.-+++..++.-++++.+++..|+.+|..+..-.-.  ..+| ....+..-+..++++++++...
T Consensus       200 nsLef~~~nF~~E~ern~iMqvvcEatq~~d~~i~~aa~~ClvkIm~LyY~~m~~yM-~~alfaitl~amks~~deValQ  278 (859)
T KOG1241|consen  200 NSLEFTKANFNNEMERNYIMQVVCEATQSPDEEIQVAAFQCLVKIMSLYYEFMEPYM-EQALFAITLAAMKSDNDEVALQ  278 (859)
T ss_pred             HHHHHHHHhhccHhhhceeeeeeeecccCCcHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHcCCcHHHHHH
Confidence            866221  1122222333677788888889999999999999988665433  3333 3335566666777999999999


Q ss_pred             HHHHHHHHhcCc-c-----------ch----hhhhh---cCCHHHHHHHhCCC-------ChhHHHHHHHHHHHhcc--C
Q 044999          241 AGNTLGVVAAHV-E-----------YI----TPVAE---AGAIPLYAELLQGP-------DSTGKEISEDVFCILAV--S  292 (461)
Q Consensus       241 a~~~L~~l~~~~-~-----------~~----~~~~~---~g~i~~L~~ll~~~-------~~~~~~~a~~~L~~l~~--~  292 (461)
                      +....++++..+ +           .+    ..+.+   .+++|.|+++|...       ++.....|..+|.-++.  .
T Consensus       279 aiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~  358 (859)
T KOG1241|consen  279 AIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVG  358 (859)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhc
Confidence            998888887531 1           11    11111   26788899988542       45677777777777753  2


Q ss_pred             cccHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhCCCC-chhHHhhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcC-Ch
Q 044999          293 EANANAIAEHLVRILREGDNEANAAAADVLWDLAGYKH-SVPVIRNSGAIPILVNLLRGENDEVREKVSGAIAQLSY-NE  370 (461)
Q Consensus       293 ~~~~~~i~~~l~~ll~~~~~~~~~~a~~~L~~l~~~~~-~~~~l~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~-~~  370 (461)
                      ++.-..+.+.+-.-++++++.-++.|+.+++.+-..++ .+..-...+++|.++.++.+++-.++..+.|+++.++. .+
T Consensus       359 D~Iv~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~  438 (859)
T KOG1241|consen  359 DDIVPHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLP  438 (859)
T ss_pred             ccchhhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhch
Confidence            33233333666667889999999999999999987643 44444566899999999999999999999999999998 44


Q ss_pred             hhH-HHHHhCCChHHHHHhccCCCHHHHHHHHHHHHHhcCC
Q 044999          371 ADR-VALADAGAVPIMIELLHDESEELRDNAAESLINFSED  410 (461)
Q Consensus       371 ~~~-~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~  410 (461)
                      +.. ........++.++.-+ ...|.+..+++|++.+|+..
T Consensus       439 e~~~n~~~l~~~l~~l~~gL-~DePrva~N~CWAf~~Laea  478 (859)
T KOG1241|consen  439 EAIINQELLQSKLSALLEGL-NDEPRVASNVCWAFISLAEA  478 (859)
T ss_pred             hhcccHhhhhHHHHHHHHHh-hhCchHHHHHHHHHHHHHHH
Confidence            211 1111112234444433 36789999999999999843

>KOG0212 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.24  E-value=5.6e-09  Score=96.51  Aligned_cols=389  Identities=14%  Similarity=0.097  Sum_probs=247.6

Q ss_pred             HHHHhhcCCHHHHHHHHHHHHhhc----CCCchhHHHhhHHHHHHh-hccCCCCCCCcHHHHHHHHHHHHHHHhc-CCch
Q 044999           15 FEQAVVSGSEALQVKALTKLARVS----KFAPQDILAATIPILARL-LGENNFSGNLTRSIQQAAAYCLKQIASQ-ADGA   88 (461)
Q Consensus        15 l~~ll~~~~~~~~~~a~~~l~~la----~~~~~~~l~~~i~~l~~~-l~~~~~~~~~~~~~~~~a~~~L~~l~~~-~~~~   88 (461)
                      +.+-+.+.-.+-|..|+.-+-++.    +.....+++++|+.+.+- ..+    ...+  ..+.+...+...+.. |.+.
T Consensus         5 i~r~ltdKlYekRKaaalelEk~Vk~l~~~~~~~~i~k~I~~L~~d~a~s----~~~n--~rkGgLiGlAA~~iaLg~~~   78 (675)
T KOG0212|consen    5 IARGLTDKLYEKRKAAALELEKLVKDLVNNNDYDQIRKVISELAGDYAYS----PHAN--MRKGGLIGLAAVAIALGIKD   78 (675)
T ss_pred             hhhhhhhHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHhccC----cccc--cccchHHHHHHHHHHhcccc
Confidence            445566666777888887777776    566666777788866544 433    2221  233444444444331 1222


Q ss_pred             hHHHHHhcCCHHHHHhcCCCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHhhC
Q 044999           89 LATEIGQSGVINSVLRLFPQSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLNSCNDGTRRYLLEILSALAL  168 (461)
Q Consensus        89 ~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~  168 (461)
                         ...-.+.+++.+..+.+.+..++-.|+..+.+++... ..........++..+.++..+++..++..| +.+-.+-.
T Consensus        79 ---~~Y~~~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~-k~~v~~~Fn~iFdvL~klsaDsd~~V~~~a-eLLdRLik  153 (675)
T KOG0212|consen   79 ---AGYLEKIVPPVLNCFSDQDSQVRYYACESLYNIAKVA-KGEVLVYFNEIFDVLCKLSADSDQNVRGGA-ELLDRLIK  153 (675)
T ss_pred             ---HHHHHHhhHHHHHhccCccceeeeHhHHHHHHHHHHh-ccCcccchHHHHHHHHHHhcCCccccccHH-HHHHHHHH
Confidence               2245677899999999999999999999999888532 222222334466777777777777665443 33332221


Q ss_pred             C--hHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhcccCCHHHHHHHHHHHH
Q 044999          169 L--REVRRVLICLGGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRARRLLVELGVIPGLVELFHIGDWTTKLVAGNTLG  246 (461)
Q Consensus       169 ~--~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~  246 (461)
                      +  .+....+-=.+.+|.+-+-+...++..|.....-+..+-..++..-.=.-...++.|+.++.+++++++..+-.++.
T Consensus       154 dIVte~~~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~  233 (675)
T KOG0212|consen  154 DIVTESASTFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLS  233 (675)
T ss_pred             HhccccccccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHH
Confidence            1  01111222234555555555566888899888888888666554211112447889999999999999977766666


Q ss_pred             HHhcCccchhhh-hhcCCHHHHHHHhCCCChhHHHHHHHHHHHhccCcccHHH--HH---HHHHHHhccCCHH-HHHHHH
Q 044999          247 VVAAHVEYITPV-AEAGAIPLYAELLQGPDSTGKEISEDVFCILAVSEANANA--IA---EHLVRILREGDNE-ANAAAA  319 (461)
Q Consensus       247 ~l~~~~~~~~~~-~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~--i~---~~l~~ll~~~~~~-~~~~a~  319 (461)
                      ++-..-.+.... --...++.++.-+.++++.++..|+.-+..+..-+...-.  ..   ..++.++.+..+. .++.+.
T Consensus       234 ~fL~eI~s~P~s~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~  313 (675)
T KOG0212|consen  234 EFLAEIRSSPSSMDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQ  313 (675)
T ss_pred             HHHHHHhcCccccCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCccccHHHHHH
Confidence            654331121111 1224578888889999999999998777777544333221  11   4444555554442 333332


Q ss_pred             ---HHHHHhhCCCCchhHHhhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhccCCCHHH
Q 044999          320 ---DVLWDLAGYKHSVPVIRNSGAIPILVNLLRGENDEVREKVSGAIAQLSYNEADRVALADAGAVPIMIELLHDESEEL  396 (461)
Q Consensus       320 ---~~L~~l~~~~~~~~~l~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~  396 (461)
                         ..+..++..+...+.+--...++.|.+++.+...+.+..++.-+..+-....++-......+.+.|+.-+.+.+.++
T Consensus       314 ~~n~~l~~l~s~~~~~~~id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql~~h~~~if~tLL~tLsd~sd~v  393 (675)
T KOG0212|consen  314 MVNGLLLKLVSSERLKEEIDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPGQLLVHNDSIFLTLLKTLSDRSDEV  393 (675)
T ss_pred             HHHHHHHHHHhhhhhccccchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcchhhhhccHHHHHHHHhhcCchhHH
Confidence               23445554444443333234688899999999999999999777777775555555566778999999999999999


Q ss_pred             HHHHHHHHHHhcCCCcch
Q 044999          397 RDNAAESLINFSEDPLQH  414 (461)
Q Consensus       397 ~~~a~~~L~~l~~~~~~~  414 (461)
                      ...+...+.+++.++...
T Consensus       394 vl~~L~lla~i~~s~~~~  411 (675)
T KOG0212|consen  394 VLLALSLLASICSSSNSP  411 (675)
T ss_pred             HHHHHHHHHHHhcCcccc
Confidence            999999999999988764

>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.23  E-value=1.4e-08  Score=97.13  Aligned_cols=399  Identities=15%  Similarity=0.195  Sum_probs=244.9

Q ss_pred             CCCcHHHhHHHHHHHhhcCCHH-HHHHHHHHHHhhc-CCCchhHHHh----hHHHHHHhhccCCCCCCCcHHHHHHHHHH
Q 044999            4 PDTNWEEAFNRFEQAVVSGSEA-LQVKALTKLARVS-KFAPQDILAA----TIPILARLLGENNFSGNLTRSIQQAAAYC   77 (461)
Q Consensus         4 ~~~~~~~~~~~l~~ll~~~~~~-~~~~a~~~l~~la-~~~~~~~l~~----~i~~l~~~l~~~~~~~~~~~~~~~~a~~~   77 (461)
                      |...|.+.++.+..-..++.+. +|..++.++|.+| +-.+. .+.+    ++..++.-.+.    .+.+..++..|..+
T Consensus       123 P~n~wp~li~~lv~nv~~~~~~~~k~~slealGyice~i~pe-vl~~~sN~iLtaIv~gmrk----~e~s~~vRLaa~~a  197 (859)
T KOG1241|consen  123 PQNQWPELIVTLVSNVGEEQASMVKESSLEALGYICEDIDPE-VLEQQSNDILTAIVQGMRK----EETSAAVRLAALNA  197 (859)
T ss_pred             chhhCHHHHHHHHHhcccccchHHHHHHHHHHHHHHccCCHH-HHHHHHhHHHHHHHhhccc----cCCchhHHHHHHHH
Confidence            6677999999998888877654 8999999999999 44444 3333    77788877776    66666677778888


Q ss_pred             HHHHHhcCCchhHHHHHhcCCHHHHHhcCCCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhcCCChHHHH
Q 044999           78 LKQIASQADGALATEIGQSGVINSVLRLFPQSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLNSCNDGTRR  157 (461)
Q Consensus        78 L~~l~~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~  157 (461)
                      |.+-............-.+-+++...+.-.+++..++..+..|+..+..-..+.-........+..-+.-+.++++.+..
T Consensus       198 L~nsLef~~~nF~~E~ern~iMqvvcEatq~~d~~i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~amks~~deVal  277 (859)
T KOG1241|consen  198 LYNSLEFTKANFNNEMERNYIMQVVCEATQSPDEEIQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAMKSDNDEVAL  277 (859)
T ss_pred             HHHHHHHHHHhhccHhhhceeeeeeeecccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHH
Confidence            88766531111222222333566667778889999999999999877754444433333333455555666788888888


Q ss_pred             HHHHHHHHhhCC-hHH----H-----------HHHHh---cCCHHHHHHHHcCC--------------------------
Q 044999          158 YLLEILSALALL-REV----R-----------RVLIC---LGGLRYLVEAVSFG--------------------------  192 (461)
Q Consensus       158 ~a~~~L~~l~~~-~~~----~-----------~~~~~---~~~l~~l~~~l~~~--------------------------  192 (461)
                      .+++..+++|.. -+.    .           ..+.+   .+.+|.|+++|...                          
T Consensus       278 QaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~  357 (859)
T KOG1241|consen  278 QAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCV  357 (859)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHh
Confidence            888888877722 110    0           01111   14566677776542                          


Q ss_pred             -------------------CHHHHHHHHHHHHHhhcCchh-HHHHHhcCChHHHHHhcccCCHHHHHHHHHHHHHHhcC-
Q 044999          193 -------------------SMVSRERACQAIGLLAVTGRA-RRLLVELGVIPGLVELFHIGDWTTKLVAGNTLGVVAAH-  251 (461)
Q Consensus       193 -------------------~~~~~~~a~~~L~~l~~~~~~-~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~-  251 (461)
                                         ++.-|..+..+++.+-..++. +..-...++++.++.++.++.--++..+.++++.++.. 
T Consensus       358 ~D~Iv~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l  437 (859)
T KOG1241|consen  358 GDDIVPHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFL  437 (859)
T ss_pred             cccchhhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhc
Confidence                               222345566666666555554 44444467899999999988888899999999999987 


Q ss_pred             ccch-hhhhhcCCHHHHHHHhCCCChhHHHHHHHHHHHhccC--c---cc-----HHHHHHHHHH-Hhc---c---CCHH
Q 044999          252 VEYI-TPVAEAGAIPLYAELLQGPDSTGKEISEDVFCILAVS--E---AN-----ANAIAEHLVR-ILR---E---GDNE  313 (461)
Q Consensus       252 ~~~~-~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~--~---~~-----~~~i~~~l~~-ll~---~---~~~~  313 (461)
                      ++.+ ......+.++.++.-+. +.|.+..++++++.+|+..  +   ++     .....+.+++ ++.   .   ....
T Consensus       438 ~e~~~n~~~l~~~l~~l~~gL~-DePrva~N~CWAf~~Laea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsN  516 (859)
T KOG1241|consen  438 PEAIINQELLQSKLSALLEGLN-DEPRVASNVCWAFISLAEAAYEAAVSNGQTDPATPFYEAIIGSLLKVTDRADGNQSN  516 (859)
T ss_pred             hhhcccHhhhhHHHHHHHHHhh-hCchHHHHHHHHHHHHHHHHHHhccCCCCCCccchhHHHHHHHHHhhccccccchhh
Confidence            3222 22223355666666665 4688999999999999621  1   01     1112233332 332   1   2356


Q ss_pred             HHHHHHHHHHHhhCC-CCchhHHhhcCCHHHHHH----hhc-----CCC----HHHHHHHHHHHHHhcC-ChhhHHHHHh
Q 044999          314 ANAAAADVLWDLAGY-KHSVPVIRNSGAIPILVN----LLR-----GEN----DEVREKVSGAIAQLSY-NEADRVALAD  378 (461)
Q Consensus       314 ~~~~a~~~L~~l~~~-~~~~~~l~~~g~i~~L~~----ll~-----~~~----~~v~~~a~~~L~~l~~-~~~~~~~~~~  378 (461)
                      .|..|-.+|..+..+ ++..-.++. +....+..    -++     ..+    .+++...+.+|..+.+ ... +..-..
T Consensus       517 LR~AAYeALmElIk~st~~vy~~v~-~~~l~il~kl~q~i~~~~l~~~dr~q~~eLQs~Lc~~Lq~i~rk~~~-~~~~~~  594 (859)
T KOG1241|consen  517 LRSAAYEALMELIKNSTDDVYPMVQ-KLTLVILEKLDQTISSQILSLADRAQLNELQSLLCNTLQSIIRKVGS-DIREVS  594 (859)
T ss_pred             HHHHHHHHHHHHHHcCcHHHHHHHH-HHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHHHHHHccc-cchhHH
Confidence            888999999999865 333222221 22222222    222     111    2355566677776666 222 222222


Q ss_pred             CCChHHHHHhccC-CCHHHHHHHHHHHHHhcCC
Q 044999          379 AGAVPIMIELLHD-ESEELRDNAAESLINFSED  410 (461)
Q Consensus       379 ~~~i~~L~~ll~~-~~~~~~~~a~~~L~~l~~~  410 (461)
                      ...+..+++++++ ++..+.+.|..++..++.+
T Consensus       595 d~iM~lflri~~s~~s~~v~e~a~laV~tl~~~  627 (859)
T KOG1241|consen  595 DQIMGLFLRIFESKRSAVVHEEAFLAVSTLAES  627 (859)
T ss_pred             HHHHHHHHHHHcCCccccchHHHHHHHHHHHHH
Confidence            3457778888866 4455666666666666544

>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]

Probab=99.18  E-value=7.3e-08  Score=83.55  Aligned_cols=384  Identities=17%  Similarity=0.167  Sum_probs=246.5

Q ss_pred             hHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHhcCCch--hH--HHHHhcCCHHHHHhcCCCCCHHHHHHHHHHHHHH
Q 044999           49 TIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQADGA--LA--TEIGQSGVINSVLRLFPQSDDSFRTVLVKCLRVF  124 (461)
Q Consensus        49 ~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~--~~--~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~l  124 (461)
                      ..+.|-.-|..    +  |..+...++..+..+.++ .+.  ..  ..++..+.++.++...-..|.++...+...+..+
T Consensus        83 lmpdLQrGLia----d--dasVKiLackqigcilEd-cDtnaVseillvvNaeilklildcIggeddeVAkAAiesikri  155 (524)
T KOG4413|consen   83 LMPDLQRGLIA----D--DASVKILACKQIGCILED-CDTNAVSEILLVVNAEILKLILDCIGGEDDEVAKAAIESIKRI  155 (524)
T ss_pred             hhHHHHhcccC----C--cchhhhhhHhhhhHHHhc-CchhhHHHHHHHhhhhHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence            44444444444    3  333444488888888885 332  22  2234678899999999999999999999999988


Q ss_pred             hccChhhHHHHHHcCCHHHH--HHHhcCCChHHHHHHHHHHHHhh-CChHHHHHHHhcCCHHHHHHHHcC-CCHHHHHHH
Q 044999          125 VTFGNENRVIVARNGGLEIV--IDLLNSCNDGTRRYLLEILSALA-LLREVRRVLICLGGLRYLVEAVSF-GSMVSRERA  200 (461)
Q Consensus       125 ~~~~~~~~~~~~~~g~i~~L--~~ll~~~~~~~~~~a~~~L~~l~-~~~~~~~~~~~~~~l~~l~~~l~~-~~~~~~~~a  200 (461)
                      +... ..-..+.++...+.+  ..+....+.-.|...+..+..+. ..++........|.+..|..-++- .+.-++..+
T Consensus       156 alfp-aaleaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianc  234 (524)
T KOG4413|consen  156 ALFP-AALEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANC  234 (524)
T ss_pred             HhcH-HHHHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhH
Confidence            8543 555666655544433  33444556667888888888887 778888888888988888777765 477788999


Q ss_pred             HHHHHHhhcCchhHHHHHhcCChHHHHHhcc--cCCHHHHHHHHHHH----HHHhcCccchhhhhhc--CCHHHHHHHhC
Q 044999          201 CQAIGLLAVTGRARRLLVELGVIPGLVELFH--IGDWTTKLVAGNTL----GVVAAHVEYITPVAEA--GAIPLYAELLQ  272 (461)
Q Consensus       201 ~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~--~~~~~~~~~a~~~L----~~l~~~~~~~~~~~~~--g~i~~L~~ll~  272 (461)
                      +.....|+.....++.+.+.|.++.+..++.  +.+|--.-.++...    ++.+..+-..+.+.+.  .++....+++.
T Consensus       235 iElvteLaeteHgreflaQeglIdlicnIIsGadsdPfekfralmgfgkffgkeaimdvseeaicealiiaidgsfEmiE  314 (524)
T KOG4413|consen  235 IELVTELAETEHGREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIE  314 (524)
T ss_pred             HHHHHHHHHHhhhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhh
Confidence            9999999999999999999999999999987  33443333333333    3333322233333332  34556677788


Q ss_pred             CCChhHHHHHHHHHHHhccCcccHHHHH----HH----HHHHhccCCHHHHHHHHHHHHHhhCC---C-----Cchh---
Q 044999          273 GPDSTGKEISEDVFCILAVSEANANAIA----EH----LVRILREGDNEANAAAADVLWDLAGY---K-----HSVP---  333 (461)
Q Consensus       273 ~~~~~~~~~a~~~L~~l~~~~~~~~~i~----~~----l~~ll~~~~~~~~~~a~~~L~~l~~~---~-----~~~~---  333 (461)
                      ..+++....|..+++.+.++.+....+.    |.    +..........-++.++.+|.+++..   +     +.+.   
T Consensus       315 mnDpdaieaAiDalGilGSnteGadlllkTgppaaehllarafdqnahakqeaaihaLaaIagelrlkpeqitDgkaeer  394 (524)
T KOG4413|consen  315 MNDPDAIEAAIDALGILGSNTEGADLLLKTGPPAAEHLLARAFDQNAHAKQEAAIHALAAIAGELRLKPEQITDGKAEER  394 (524)
T ss_pred             cCCchHHHHHHHHHHhccCCcchhHHHhccCChHHHHHHHHHhcccccchHHHHHHHHHHhhccccCChhhccccHHHHH
Confidence            8899999999999999988888777666    23    33333333344566778888888753   1     1111   


Q ss_pred             ---HHh-------hcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCChhh-HHHHHhCCChHHHHHhccC---CCHHHHHH
Q 044999          334 ---VIR-------NSGAIPILVNLLRGENDEVREKVSGAIAQLSYNEAD-RVALADAGAVPIMIELLHD---ESEELRDN  399 (461)
Q Consensus       334 ---~l~-------~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~-~~~~~~~~~i~~L~~ll~~---~~~~~~~~  399 (461)
                         .+.       +..-.+.+...++.+.++++..+.+++..++..|=+ +..+.+.+.+..+.+.-..   -..+.+.+
T Consensus       395 lrclifdaaaqstkldPleLFlgilqQpfpEihcAalktfTAiaaqPWalkeifakeefieiVtDastEhaKaakdAkYe  474 (524)
T KOG4413|consen  395 LRCLIFDAAAQSTKLDPLELFLGILQQPFPEIHCAALKTFTAIAAQPWALKEIFAKEEFIEIVTDASTEHAKAAKDAKYE  474 (524)
T ss_pred             HHHHHHHHHhhccCCChHHHHHHHHcCCChhhHHHHHHHHHHHHcCcHHHHHHhcCccceeeecccchhhHHHHHHHHHH
Confidence               111       112345566777788899999999999999985544 4444555655554443321   13344555


Q ss_pred             HHHHHHHhcCCCcchHHHHHhhCCchHHhHHHHHHHhhhchhHHHHHH
Q 044999          400 AAESLINFSEDPLQHERISEAIGIPSFQSMQSRLTRIRASDDLMARSM  447 (461)
Q Consensus       400 a~~~L~~l~~~~~~~~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~  447 (461)
                      ++.++.+       .....+..+.|...++-..+.+...+..+++|+-
T Consensus       475 ccKAiae-------aflcaeffddPnrLklgdkLqEavrsGPYmsKkh  515 (524)
T KOG4413|consen  475 CCKAIAE-------AFLCAEFFDDPNRLKLGDKLQEAVRSGPYMSKKH  515 (524)
T ss_pred             HHHHHHH-------HHHHHHHcCChhhhhHHHHHHHHhccCCcccccc
Confidence            6665543       2233444455554444444444444445555543

>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=99.17  E-value=2.4e-09  Score=98.09  Aligned_cols=226  Identities=16%  Similarity=0.135  Sum_probs=160.5

Q ss_pred             hHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHhcCCchhHHHHHh------cCCHHHHHhcCCCCCHHHHHHHHHHHH
Q 044999           49 TIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQADGALATEIGQ------SGVINSVLRLFPQSDDSFRTVLVKCLR  122 (461)
Q Consensus        49 ~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~------~~~l~~L~~ll~~~~~~~~~~~~~~l~  122 (461)
                      ....++++|+.    -+.+++..+.....+..+..+ ++.....+..      ......+++++.++|..++..++..+.
T Consensus        56 ~~~~~l~lL~~----~~~~~d~v~yvL~li~dll~~-~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt  130 (312)
T PF03224_consen   56 YASLFLNLLNK----LSSNDDTVQYVLTLIDDLLSD-DPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILT  130 (312)
T ss_dssp             ------HHHHH----H---HHHHHHHHHHHHHHHH--SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHH----ccCcHHHHHHHHHHHHHHHhc-CHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHH
Confidence            45666666665    223456788888999999986 4455555544      125788889999999999999999999


Q ss_pred             HHhccChhhHHHHHHcCCHHHHHHHhcC----CChHHHHHHHHHHHHhhCChHHHHHHHhcCCHHHHHHHH------cCC
Q 044999          123 VFVTFGNENRVIVARNGGLEIVIDLLNS----CNDGTRRYLLEILSALALLREVRRVLICLGGLRYLVEAV------SFG  192 (461)
Q Consensus       123 ~l~~~~~~~~~~~~~~g~i~~L~~ll~~----~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~~l------~~~  192 (461)
                      .+....+....... .+.++.++..+++    .+...+..++.+|.++...++.|..+.+.++++.+..++      .+.
T Consensus       131 ~Ll~~~~~~~~~~~-~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~  209 (312)
T PF03224_consen  131 SLLSQGPKRSEKLV-KEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWKSNGVSPLFDILRKQATNSNS  209 (312)
T ss_dssp             HHHTSTTT--HHHH-HHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHHH--------
T ss_pred             HHHHcCCccccchH-HHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHhcCcHHHHHHHHHhhcccCCC
Confidence            88865544333322 4456777777654    344677999999999999999999999999999999999      222


Q ss_pred             -CHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhcc-cCCHHHHHHHHHHHHHHhcCcc--chhhhhhcCCHHHHH
Q 044999          193 -SMVSRERACQAIGLLAVTGRARRLLVELGVIPGLVELFH-IGDWTTKLVAGNTLGVVAAHVE--YITPVAEAGAIPLYA  268 (461)
Q Consensus       193 -~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~~--~~~~~~~~g~i~~L~  268 (461)
                       +..+++.++.+++.|+.+++....+.+.+.++.|+++++ ...+++.+.++.++.|+.....  +...++..|+++.+-
T Consensus       210 ~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~~l~~l~  289 (312)
T PF03224_consen  210 SGIQLQYQALLCLWLLSFEPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLCGLLKTLQ  289 (312)
T ss_dssp             -HHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-HHHHHH
T ss_pred             CchhHHHHHHHHHHHHhcCHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHccHHHHHH
Confidence             458999999999999999999888999889999999998 5578899999999999998844  778888888666666


Q ss_pred             HHhCCC--ChhHHH
Q 044999          269 ELLQGP--DSTGKE  280 (461)
Q Consensus       269 ~ll~~~--~~~~~~  280 (461)
                      .+....  |+++.+
T Consensus       290 ~L~~rk~~Dedl~e  303 (312)
T PF03224_consen  290 NLSERKWSDEDLTE  303 (312)
T ss_dssp             HHHSS--SSHHHHH
T ss_pred             HHhcCCCCCHHHHH
Confidence            655433  677655

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=99.16  E-value=1.2e-09  Score=99.96  Aligned_cols=228  Identities=16%  Similarity=0.189  Sum_probs=162.1

Q ss_pred             HHHHHHHhcC--CChHHHHHHHHHHHHhh-CChHHHHHHHhc------CCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCc
Q 044999          141 LEIVIDLLNS--CNDGTRRYLLEILSALA-LLREVRRVLICL------GGLRYLVEAVSFGSMVSRERACQAIGLLAVTG  211 (461)
Q Consensus       141 i~~L~~ll~~--~~~~~~~~a~~~L~~l~-~~~~~~~~~~~~------~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~  211 (461)
                      ...++.+++.  .++++..+.+..+..+. .++...+.+...      .....+++++.++|..++..++.++..+....
T Consensus        57 ~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~  136 (312)
T PF03224_consen   57 ASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQG  136 (312)
T ss_dssp             -----HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTST
T ss_pred             HHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHcC
Confidence            5556666654  57789999999999988 555455444441      26788889999999999999999999998887


Q ss_pred             hhHHHHHhcCChHHHHHhccc----CCHHHHHHHHHHHHHHhcCccchhhhhhcCCHHHHHHHhC-----CCChhHHHHH
Q 044999          212 RARRLLVELGVIPGLVELFHI----GDWTTKLVAGNTLGVVAAHVEYITPVAEAGAIPLYAELLQ-----GPDSTGKEIS  282 (461)
Q Consensus       212 ~~~~~~~~~~~i~~L~~ll~~----~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~ll~-----~~~~~~~~~a  282 (461)
                      +....-...+.++.++.++.+    ++...+..++.+|.++...++.|..+.+.++++.+..++.     +....     
T Consensus       137 ~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~-----  211 (312)
T PF03224_consen  137 PKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWKSNGVSPLFDILRKQATNSNSSG-----  211 (312)
T ss_dssp             TT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHHH---------H-----
T ss_pred             CccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHhcCcHHHHHHHHHhhcccCCCCc-----
Confidence            774433224566777777764    3456678999999999999999999999999999999983     22111     


Q ss_pred             HHHHHHhccCcccHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCchhHHhhcCCHHHHHHhhcC-CCHHHHHHHHH
Q 044999          283 EDVFCILAVSEANANAIAEHLVRILREGDNEANAAAADVLWDLAGYKHSVPVIRNSGAIPILVNLLRG-ENDEVREKVSG  361 (461)
Q Consensus       283 ~~~L~~l~~~~~~~~~i~~~l~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~ll~~-~~~~v~~~a~~  361 (461)
                                                   .+++..++.++|.|+.+++..+.+.+.+.++.|+++++. ..+.+.+-++.
T Consensus       212 -----------------------------~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la  262 (312)
T PF03224_consen  212 -----------------------------IQLQYQALLCLWLLSFEPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLA  262 (312)
T ss_dssp             -----------------------------HHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHH
T ss_pred             -----------------------------hhHHHHHHHHHHHHhcCHHHHHHHhccchHHHHHHHHHhcccchHHHHHHH
Confidence                                         234558899999999999999999999999999999985 46778999999


Q ss_pred             HHHHhcCChh--hHHHHHhCCChHHHHHhcc--CCCHHHHHHHHH
Q 044999          362 AIAQLSYNEA--DRVALADAGAVPIMIELLH--DESEELRDNAAE  402 (461)
Q Consensus       362 ~L~~l~~~~~--~~~~~~~~~~i~~L~~ll~--~~~~~~~~~a~~  402 (461)
                      ++.|+.....  +...++..|+++.+-.+..  -.++++.+-.-.
T Consensus       263 ~l~Nl~~~~~~~~~~~mv~~~~l~~l~~L~~rk~~Dedl~edl~~  307 (312)
T PF03224_consen  263 ILRNLLSKAPKSNIELMVLCGLLKTLQNLSERKWSDEDLTEDLEF  307 (312)
T ss_dssp             HHHHTTSSSSTTHHHHHHHH-HHHHHHHHHSS--SSHHHHHHHHH
T ss_pred             HHHHHHhccHHHHHHHHHHccHHHHHHHHhcCCCCCHHHHHHHHH
Confidence            9999999443  8888888886666655553  267777765433

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.16  E-value=1e-08  Score=90.68  Aligned_cols=186  Identities=18%  Similarity=0.183  Sum_probs=160.7

Q ss_pred             CCCcHHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHhcCCCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHH
Q 044999           64 GNLTRSIQQAAAYCLKQIASQADGALATEIGQSGVINSVLRLFPQSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEI  143 (461)
Q Consensus        64 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~  143 (461)
                      .+-+++....|..-|..+++  +..+...+...|++..++..+++.+..+|..|++.+...+..++..+..+.+.|+.+.
T Consensus        93 ~s~~le~ke~ald~Le~lve--~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~  170 (342)
T KOG2160|consen   93 SSVDLEDKEDALDNLEELVE--DIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSK  170 (342)
T ss_pred             ccCCHHHHHHHHHHHHHHHH--hhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHH
Confidence            33455566669999999999  8889999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCCh-HHHHHHHHHHHHhh-CChHHHHHHHhcCCHHHHHHHHcC--CCHHHHHHHHHHHHHhhcCchh-HHHHH
Q 044999          144 VIDLLNSCND-GTRRYLLEILSALA-LLREVRRVLICLGGLRYLVEAVSF--GSMVSRERACQAIGLLAVTGRA-RRLLV  218 (461)
Q Consensus       144 L~~ll~~~~~-~~~~~a~~~L~~l~-~~~~~~~~~~~~~~l~~l~~~l~~--~~~~~~~~a~~~L~~l~~~~~~-~~~~~  218 (461)
                      |+..+.+.++ .++..|+.+++.+- .++.....+...+|...|...+++  .+...+..++..+..+...... ...+.
T Consensus       171 Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~  250 (342)
T KOG2160|consen  171 LLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIAS  250 (342)
T ss_pred             HHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHH
Confidence            9999987655 77799999999999 778888999999999999999998  4678899999999999988877 55555


Q ss_pred             hcCChHHHHHhcccCCHHHHHHHHHHHHHHhcC
Q 044999          219 ELGVIPGLVELFHIGDWTTKLVAGNTLGVVAAH  251 (461)
Q Consensus       219 ~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~  251 (461)
                      ..++...+..+....+.++.+.+..++..+...
T Consensus       251 ~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~~  283 (342)
T KOG2160|consen  251 SLGFQRVLENLISSLDFEVNEAALTALLSLLSE  283 (342)
T ss_pred             HhhhhHHHHHHhhccchhhhHHHHHHHHHHHHH
Confidence            566777777777788888888888877776655

>KOG0212 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.16  E-value=5e-08  Score=90.36  Aligned_cols=353  Identities=13%  Similarity=0.068  Sum_probs=234.0

Q ss_pred             HHHhHHHHHHHhhcCCHHHHHHHHHHHHhhc--CCCchhHHHh-hHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHhc
Q 044999            8 WEEAFNRFEQAVVSGSEALQVKALTKLARVS--KFAPQDILAA-TIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQ   84 (461)
Q Consensus         8 ~~~~~~~l~~ll~~~~~~~~~~a~~~l~~la--~~~~~~~l~~-~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~   84 (461)
                      .++.+++.+..+++.|..+|..|+..+.+++  -.+..-...+ +...+-++..     +++ . ..+.++..|-.+..+
T Consensus        82 ~~~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~klsa-----Dsd-~-~V~~~aeLLdRLikd  154 (675)
T KOG0212|consen   82 LEKIVPPVLNCFSDQDSQVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCKLSA-----DSD-Q-NVRGGAELLDRLIKD  154 (675)
T ss_pred             HHHhhHHHHHhccCccceeeeHhHHHHHHHHHHhccCcccchHHHHHHHHHHhc-----CCc-c-ccccHHHHHHHHHHH
Confidence            6778899999999999999999999999999  1111112222 5555555554     322 2 345577888888873


Q ss_pred             CCchhHHHHHhcCCHHHHHhcCCCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHH
Q 044999           85 ADGALATEIGQSGVINSVLRLFPQSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLNSCNDGTRRYLLEILS  164 (461)
Q Consensus        85 ~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~  164 (461)
                      -..+....+--.+++|.|-.-+..-++.++......+..+-... .....-.-...++.|+.+|+++.+++|..+=.++.
T Consensus       155 IVte~~~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P-~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~  233 (675)
T KOG0212|consen  155 IVTESASTFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVP-DLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLS  233 (675)
T ss_pred             hccccccccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCC-cHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHH
Confidence            11122223333456676666677778888888777776554322 22221122346777888999999999876666565


Q ss_pred             HhhCChHHHHHHHh-cCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhcccCCH-HHHHHHH
Q 044999          165 ALALLREVRRVLIC-LGGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRARRLLVELGVIPGLVELFHIGDW-TTKLVAG  242 (461)
Q Consensus       165 ~l~~~~~~~~~~~~-~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~-~~~~~a~  242 (461)
                      ++...-.+.....+ ...++.++.-+.++++.++..|+.-+..+..-.+..-...-+|++..++.++.+..+ .+++.+.
T Consensus       234 ~fL~eI~s~P~s~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~  313 (675)
T KOG0212|consen  234 EFLAEIRSSPSSMDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQ  313 (675)
T ss_pred             HHHHHHhcCccccCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCccccHHHHHH
Confidence            55422112222222 347888899999999999999998888887777765555667788888888886655 3444443


Q ss_pred             H---HHHHHhcCccchhhhhhc-CCHHHHHHHhCCCChhHHHHHHHHHHHhccCcccHHH-----HHHHHHHHhccCCHH
Q 044999          243 N---TLGVVAAHVEYITPVAEA-GAIPLYAELLQGPDSTGKEISEDVFCILAVSEANANA-----IAEHLVRILREGDNE  313 (461)
Q Consensus       243 ~---~L~~l~~~~~~~~~~~~~-g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~-----i~~~l~~ll~~~~~~  313 (461)
                      .   .+..+...+..... ++. .++..+...+.++..+.+..++.-+..+-....++-.     +.+.++.-|.+.+++
T Consensus       314 ~~n~~l~~l~s~~~~~~~-id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql~~h~~~if~tLL~tLsd~sd~  392 (675)
T KOG0212|consen  314 MVNGLLLKLVSSERLKEE-IDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPGQLLVHNDSIFLTLLKTLSDRSDE  392 (675)
T ss_pred             HHHHHHHHHHhhhhhccc-cchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcchhhhhccHHHHHHHHhhcCchhH
Confidence            2   23334433333333 332 4678888889998899999888777777443333322     228888888999999


Q ss_pred             HHHHHHHHHHHhhCCCCchhHHhhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcC--Chhh
Q 044999          314 ANAAAADVLWDLAGYKHSVPVIRNSGAIPILVNLLRGENDEVREKVSGAIAQLSY--NEAD  372 (461)
Q Consensus       314 ~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~--~~~~  372 (461)
                      +...++..+.++|.+++....   ..++..|.++......-+...+.-+++.+|.  +++.
T Consensus       393 vvl~~L~lla~i~~s~~~~~~---~~fl~sLL~~f~e~~~~l~~Rg~lIIRqlC~lL~aE~  450 (675)
T KOG0212|consen  393 VVLLALSLLASICSSSNSPNL---RKFLLSLLEMFKEDTKLLEVRGNLIIRQLCLLLNAER  450 (675)
T ss_pred             HHHHHHHHHHHHhcCcccccH---HHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHhCHHH
Confidence            999999999999977554422   2245556666666666678888888999988  6553

>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.15  E-value=1.5e-07  Score=90.81  Aligned_cols=272  Identities=14%  Similarity=0.144  Sum_probs=175.0

Q ss_pred             HHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHhcCCCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHh
Q 044999           69 SIQQAAAYCLKQIASQADGALATEIGQSGVINSVLRLFPQSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLL  148 (461)
Q Consensus        69 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll  148 (461)
                      -++..|+-+|++++.  ++-.++      ..|.+.+++++.++.+++.|+.|...+....++.-+.|     ++...++|
T Consensus       122 ~vVglAL~alg~i~s--~Emard------lapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l~e~f-----~~~~~~lL  188 (866)
T KOG1062|consen  122 YVVGLALCALGNICS--PEMARD------LAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDLVEHF-----VIAFRKLL  188 (866)
T ss_pred             eehHHHHHHhhccCC--HHHhHH------hhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchHHHHh-----hHHHHHHH
Confidence            355558788888886  443433      35788899999999999999999998887776665544     55677888


Q ss_pred             cCCChHHHHHHHHHHHHhh-CChHHHHHHHhcCCHHHHHHHHcC---------------CCHHHHHHHHHHHHHhhcCch
Q 044999          149 NSCNDGTRRYLLEILSALA-LLREVRRVLICLGGLRYLVEAVSF---------------GSMVSRERACQAIGLLAVTGR  212 (461)
Q Consensus       149 ~~~~~~~~~~a~~~L~~l~-~~~~~~~~~~~~~~l~~l~~~l~~---------------~~~~~~~~a~~~L~~l~~~~~  212 (461)
                      .+.+..+...++..+..+| .+++.-..+-+  .++.++..|+.               .+|.+|...++.|+-|-.+++
T Consensus       189 ~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~--l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLGq~d~  266 (866)
T KOG1062|consen  189 CEKHHGVLIAGLHLITELCKISPDALSYFRD--LVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILGQNDA  266 (866)
T ss_pred             hhcCCceeeeHHHHHHHHHhcCHHHHHHHHH--HHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhcCCCc
Confidence            8888888889999999999 66766666655  56666666642               257889999999999988877


Q ss_pred             h-HHHHHhcCChHHHHHhcccC---CHHHHHHHHHHHHHHhcCccchhhhhhcCCHHHHHHHhCCCChhHHHHHHHHHHH
Q 044999          213 A-RRLLVELGVIPGLVELFHIG---DWTTKLVAGNTLGVVAAHVEYITPVAEAGAIPLYAELLQGPDSTGKEISEDVFCI  288 (461)
Q Consensus       213 ~-~~~~~~~~~i~~L~~ll~~~---~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~  288 (461)
                      . .+.|.+  ++..+..-..+.   ...+...++.++..+-.+...|..-     +..|-+++.+.+..+|..++..|..
T Consensus       267 daSd~M~D--iLaqvatntdsskN~GnAILYE~V~TI~~I~~~~~Lrvla-----iniLgkFL~n~d~NirYvaLn~L~r  339 (866)
T KOG1062|consen  267 DASDLMND--ILAQVATNTDSSKNAGNAILYECVRTIMDIRSNSGLRVLA-----INILGKFLLNRDNNIRYVALNMLLR  339 (866)
T ss_pred             cHHHHHHH--HHHHHHhcccccccchhHHHHHHHHHHHhccCCchHHHHH-----HHHHHHHhcCCccceeeeehhhHHh
Confidence            6 444432  222222111111   1233344444444433333333322     5556666666666666666666666


Q ss_pred             hccCcccHHHHH-HHHHHHhccCCHHHHHHHHHHHHHhhCCCCchhHHhhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhc
Q 044999          289 LAVSEANANAIA-EHLVRILREGDNEANAAAADVLWDLAGYKHSVPVIRNSGAIPILVNLLRGENDEVREKVSGAIAQLS  367 (461)
Q Consensus       289 l~~~~~~~~~i~-~~l~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~  367 (461)
                      ....++...+-- ..++++|++.+..++..|+..+..|... .|...++     ..|+.+|...+++.+...+.-+..++
T Consensus       340 ~V~~d~~avqrHr~tIleCL~DpD~SIkrralELs~~lvn~-~Nv~~mv-----~eLl~fL~~~d~~~k~~~as~I~~la  413 (866)
T KOG1062|consen  340 VVQQDPTAVQRHRSTILECLKDPDVSIKRRALELSYALVNE-SNVRVMV-----KELLEFLESSDEDFKADIASKIAELA  413 (866)
T ss_pred             hhcCCcHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhcc-ccHHHHH-----HHHHHHHHhccHHHHHHHHHHHHHHH
Confidence            655444433322 6677777777777777777777777543 3333333     33777777667777776666666666


Q ss_pred             C
Q 044999          368 Y  368 (461)
Q Consensus       368 ~  368 (461)
                      .
T Consensus       414 E  414 (866)
T KOG1062|consen  414 E  414 (866)
T ss_pred             H
Confidence            6

>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.14  E-value=1.3e-08  Score=89.93  Aligned_cols=182  Identities=16%  Similarity=0.113  Sum_probs=152.7

Q ss_pred             CCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHhh-CChHHHHHHHhcCCHHHHH
Q 044999          108 QSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLNSCNDGTRRYLLEILSALA-LLREVRRVLICLGGLRYLV  186 (461)
Q Consensus       108 ~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~-~~~~~~~~~~~~~~l~~l~  186 (461)
                      +.+.+-+..+..-+..++ ++.++...+...||...++..+++++..+|+.|+++|..++ .++..+..+++.|+++.|+
T Consensus        94 s~~le~ke~ald~Le~lv-e~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll  172 (342)
T KOG2160|consen   94 SVDLEDKEDALDNLEELV-EDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLL  172 (342)
T ss_pred             cCCHHHHHHHHHHHHHHH-HhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHH
Confidence            445665777777777888 66788999999999999999999999999999999999999 7888899999999999999


Q ss_pred             HHHcCC-CHHHHHHHHHHHHHhhcCchh-HHHHHhcCChHHHHHhccc--CCHHHHHHHHHHHHHHhcC-ccchhhhhhc
Q 044999          187 EAVSFG-SMVSRERACQAIGLLAVTGRA-RRLLVELGVIPGLVELFHI--GDWTTKLVAGNTLGVVAAH-VEYITPVAEA  261 (461)
Q Consensus       187 ~~l~~~-~~~~~~~a~~~L~~l~~~~~~-~~~~~~~~~i~~L~~ll~~--~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~  261 (461)
                      ..+.++ +.+++..|+.+++.+..+.+. ...+...++...|...+++  .+...+..++..+..+... ...+..+...
T Consensus       173 ~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~  252 (342)
T KOG2160|consen  173 KILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASSL  252 (342)
T ss_pred             HHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHHh
Confidence            999876 558889999999999999887 8888888899999999997  5777888999999998877 4444444445


Q ss_pred             CCHHHHHHHhCCCChhHHHHHHHHHHHhc
Q 044999          262 GAIPLYAELLQGPDSTGKEISEDVFCILA  290 (461)
Q Consensus       262 g~i~~L~~ll~~~~~~~~~~a~~~L~~l~  290 (461)
                      ++...+..+..+.+.++++.+..++..+.
T Consensus       253 ~f~~~~~~l~~~l~~~~~e~~l~~~l~~l  281 (342)
T KOG2160|consen  253 GFQRVLENLISSLDFEVNEAALTALLSLL  281 (342)
T ss_pred             hhhHHHHHHhhccchhhhHHHHHHHHHHH
Confidence            66666777777778888888887766553

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.09  E-value=2.6e-07  Score=89.03  Aligned_cols=323  Identities=15%  Similarity=0.155  Sum_probs=232.8

Q ss_pred             HHHhHHHHHHHhhcCC-HHHHHHHHHHHHhhcCCCchhHHHh-hHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHhcC
Q 044999            8 WEEAFNRFEQAVVSGS-EALQVKALTKLARVSKFAPQDILAA-TIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQA   85 (461)
Q Consensus         8 ~~~~~~~l~~ll~~~~-~~~~~~a~~~l~~la~~~~~~~l~~-~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~   85 (461)
                      -.+.++.|+.-+.+.. .+-|+.|+++|..++ ...|..+.. +++++++.|+.    +-.|++....+..+++.+...+
T Consensus        20 ~aETI~kLcDRvessTL~eDRR~A~rgLKa~s-rkYR~~Vga~Gmk~li~vL~~----D~~D~E~ik~~LdTl~il~~~d   94 (970)
T KOG0946|consen   20 AAETIEKLCDRVESSTLLEDRRDAVRGLKAFS-RKYREEVGAQGMKPLIQVLQR----DYMDPEIIKYALDTLLILTSHD   94 (970)
T ss_pred             HHhHHHHHHHHHhhccchhhHHHHHHHHHHHH-HHHHHHHHHcccHHHHHHHhh----ccCCHHHHHHHHHHHHHHHhcC
Confidence            5677888887777654 678999999999888 223333444 99999999999    8889999999999999999864


Q ss_pred             C-------c--------hhHHHHH-hcCCHHHHHhcCCCCCHHHHHHHHHHHHHHhc-cChhhHHHHHH-cCCHHHHHHH
Q 044999           86 D-------G--------ALATEIG-QSGVINSVLRLFPQSDDSFRTVLVKCLRVFVT-FGNENRVIVAR-NGGLEIVIDL  147 (461)
Q Consensus        86 ~-------~--------~~~~~~~-~~~~l~~L~~ll~~~~~~~~~~~~~~l~~l~~-~~~~~~~~~~~-~g~i~~L~~l  147 (461)
                      +       +        ...+.+. ..+.+..++..+...|..||..+...+..+.. ...+.+..+.. ..++..++.+
T Consensus        95 d~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdl  174 (970)
T KOG0946|consen   95 DSPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDL  174 (970)
T ss_pred             cchhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHH
Confidence            2       1        1223333 34678999999999999999999988885554 56677766654 5689999999


Q ss_pred             hcCCChHHHHHHHHHHHHhhCC-hHHHHHHHhcCCHHHHHHHHcCC---C-HHHHHHHHHHHHHhhcCchh-HHHHHhcC
Q 044999          148 LNSCNDGTRRYLLEILSALALL-REVRRVLICLGGLRYLVEAVSFG---S-MVSRERACQAIGLLAVTGRA-RRLLVELG  221 (461)
Q Consensus       148 l~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~~~l~~l~~~l~~~---~-~~~~~~a~~~L~~l~~~~~~-~~~~~~~~  221 (461)
                      |.+..+.+|..++-.|..++.+ +..++.+.-.++..+|+.++...   + .-+...|+..|-||-.++.. +..|.+.+
T Consensus       175 L~DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~  254 (970)
T KOG0946|consen  175 LRDSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGS  254 (970)
T ss_pred             HhhhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhccc
Confidence            9999999999999999999954 45555555578999999999765   2 25788999999999988876 99999999


Q ss_pred             ChHHHHHhcc---cCC-----HHHH-----HHHHHHHHHHhcC-------ccchhhhhhcCCHHHHHHHhCCC--ChhHH
Q 044999          222 VIPGLVELFH---IGD-----WTTK-----LVAGNTLGVVAAH-------VEYITPVAEAGAIPLYAELLQGP--DSTGK  279 (461)
Q Consensus       222 ~i~~L~~ll~---~~~-----~~~~-----~~a~~~L~~l~~~-------~~~~~~~~~~g~i~~L~~ll~~~--~~~~~  279 (461)
                      .+|.|.++|.   .++     +..+     ..++.+++.+..-       ..++..+...+++..|+.++-++  ..+++
T Consensus       255 ~i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~vp~dIl  334 (970)
T KOG0946|consen  255 YIPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHPGVPADIL  334 (970)
T ss_pred             cHHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCCCcHhHH
Confidence            9999998876   222     1222     2344444444332       22445677788999999988766  56788


Q ss_pred             HHHHHHHHHhccCc-ccHHHHH-----------H----HHHHHhccC-CHHHHHHHHHHHHHhh-CCCCchhHH
Q 044999          280 EISEDVFCILAVSE-ANANAIA-----------E----HLVRILREG-DNEANAAAADVLWDLA-GYKHSVPVI  335 (461)
Q Consensus       280 ~~a~~~L~~l~~~~-~~~~~i~-----------~----~l~~ll~~~-~~~~~~~a~~~L~~l~-~~~~~~~~l  335 (461)
                      ..+..+++++...+ .++..++           +    .++.+..+. .+..|.++..++..+. .+.+.+..+
T Consensus       335 tesiitvAevVRgn~~nQ~~F~~v~~p~~~~Pr~sivvllmsm~ne~q~~~lRcAv~ycf~s~l~dN~~gq~~~  408 (970)
T KOG0946|consen  335 TESIITVAEVVRGNARNQDEFADVTAPSIPNPRPSIVVLLMSMFNEKQPFSLRCAVLYCFRSYLYDNDDGQRKF  408 (970)
T ss_pred             HHHHHHHHHHHHhchHHHHHHhhccCCCCCCCccchhHHHHHHHhccCCchHHHHHHHHHHHHHhcchhhHHHH
Confidence            88888888885433 3444444           1    222333333 4667777777777665 444444333

>PF05536 Neurochondrin: Neurochondrin

Probab=99.09  E-value=3.7e-07  Score=89.07  Aligned_cols=421  Identities=14%  Similarity=0.085  Sum_probs=256.5

Q ss_pred             HHHhHHHHHHHhhcCCHHHHHHHHHHHHhhc-CCC-c---hhHHHh--hHHHHHHhhccCCCCCCCcHHHHHH-HHHHHH
Q 044999            8 WEEAFNRFEQAVVSGSEALQVKALTKLARVS-KFA-P---QDILAA--TIPILARLLGENNFSGNLTRSIQQA-AAYCLK   79 (461)
Q Consensus         8 ~~~~~~~l~~ll~~~~~~~~~~a~~~l~~la-~~~-~---~~~l~~--~i~~l~~~l~~~~~~~~~~~~~~~~-a~~~L~   79 (461)
                      ..+.++....++++.++.-|..+...+..+. +.. .   ++.+.+  ..+-+-++|+++..|...++..... |+..|.
T Consensus         3 ~~~~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~   82 (543)
T PF05536_consen    3 QSASLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLA   82 (543)
T ss_pred             chHHHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHH
Confidence            4567899999999999888888888888888 322 2   223445  6777788888755444434445555 889999


Q ss_pred             HHHhcCCchhHHHHHhcCCHHHHHhcCCCCCH-HHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhcCCChHHHHH
Q 044999           80 QIASQADGALATEIGQSGVINSVLRLFPQSDD-SFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLNSCNDGTRRY  158 (461)
Q Consensus        80 ~l~~~~~~~~~~~~~~~~~l~~L~~ll~~~~~-~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~  158 (461)
                      .++.  +++....-.--+-+|.|++.+...+. .+...+..++..++ ..++++..+.+.|+++.|++.+.+ .+...+.
T Consensus        83 ~f~~--~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ia-s~~~G~~aLl~~g~v~~L~ei~~~-~~~~~E~  158 (543)
T PF05536_consen   83 AFCR--DPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIA-SSPEGAKALLESGAVPALCEIIPN-QSFQMEI  158 (543)
T ss_pred             HHcC--ChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHH-cCcHhHHHHHhcCCHHHHHHHHHh-CcchHHH
Confidence            9998  55543333233568999999987766 88889999999999 677999999999999999999877 5667889


Q ss_pred             HHHHHHHhhCChHHHHHHHh-----cCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCchh--HHHHHhcC----ChHHHH
Q 044999          159 LLEILSALALLREVRRVLIC-----LGGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRA--RRLLVELG----VIPGLV  227 (461)
Q Consensus       159 a~~~L~~l~~~~~~~~~~~~-----~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~--~~~~~~~~----~i~~L~  227 (461)
                      |+.++.+++...... ..-+     ...++.+-..+.......+-..+..|..+-...+.  ........    +...+.
T Consensus       159 Al~lL~~Lls~~~~~-~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~  237 (543)
T PF05536_consen  159 ALNLLLNLLSRLGQK-SWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLR  237 (543)
T ss_pred             HHHHHHHHHHhcchh-hhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHH
Confidence            999999887432211 0101     12345555555555556677788888887665531  11222222    344455


Q ss_pred             HhcccC-CHHHHHHHHHHHHHHhcCccchhhhhhc-----CCHHHHHHH---------------hCCCCh-h--------
Q 044999          228 ELFHIG-DWTTKLVAGNTLGVVAAHVEYITPVAEA-----GAIPLYAEL---------------LQGPDS-T--------  277 (461)
Q Consensus       228 ~ll~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~-----g~i~~L~~l---------------l~~~~~-~--------  277 (461)
                      .++++. .+.-|..++.....+.......-.+...     .+.-.++++               .+.+.. .        
T Consensus       238 ~iL~sr~~~~~R~~al~Laa~Ll~~~G~~wl~~~~~~~~~~F~~Llv~l~~VEir~~L~~L~~~~~~~~~~~~~~~L~~c  317 (543)
T PF05536_consen  238 DILQSRLTPSQRDPALNLAASLLDLLGPEWLFADDKKSGKKFLLLLVNLACVEIRMSLEELLEQLNPEEYPEKQRLLASC  317 (543)
T ss_pred             HHHhcCCCHHHHHHHHHHHHHHHHHhChHhhcCCCCCCcccHHHHHHHHHHHHHHHHhHHhhhcCCchhhHHHHHHHHHH
Confidence            566543 4555555555555544321110000000     122222222               111111 1        


Q ss_pred             --HHHHHHHHHHHhccCc------ccHHHHH-------HHHHHHhccC------CHHHHHHHHHHHHHhhCCCCc--hhH
Q 044999          278 --GKEISEDVFCILAVSE------ANANAIA-------EHLVRILREG------DNEANAAAADVLWDLAGYKHS--VPV  334 (461)
Q Consensus       278 --~~~~a~~~L~~l~~~~------~~~~~i~-------~~l~~ll~~~------~~~~~~~a~~~L~~l~~~~~~--~~~  334 (461)
                        +.+.....+.+-...+      +...++.       ..++.+|+..      ++.....++++|+..-..+.+  ++.
T Consensus       318 f~ilE~~I~~l~~~~~~~~~~~~~~~l~kl~~~l~e~~~~vle~L~~~~d~~~~d~~~vlAsvR~L~~WLaEe~~~lr~~  397 (543)
T PF05536_consen  318 FSILEHFIGYLVRSLEEESLDLDPDTLLKLRTSLSETFSAVLEYLRDVWDESQKDPDFVLASVRVLGAWLAEETSALRKE  397 (543)
T ss_pred             HHHHHHHHHHHHhccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHhChHHHHHH
Confidence              1112222222211111      1111222       5556666432      234666778888877654333  444


Q ss_pred             HhhcCCHHHHHHhhcCCC----------HHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhc----cC--CCH----
Q 044999          335 IRNSGAIPILVNLLRGEN----------DEVREKVSGAIAQLSYNEADRVALADAGAVPIMIELL----HD--ESE----  394 (461)
Q Consensus       335 l~~~g~i~~L~~ll~~~~----------~~v~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll----~~--~~~----  394 (461)
                      +  .|.+|.++.+.+...          .+.....+-+|..++..++.++.+..+|+...|.+.+    +.  +.+    
T Consensus       398 v--~~Ll~~ll~~~~~~~~~~~~~~~~~~d~~r~lLPaL~~lt~e~~gr~~l~~~~g~~~l~~~l~~~~~~~~~~~~~~~  475 (543)
T PF05536_consen  398 V--YGLLPFLLSLYRESFQEAEPAREGPLDFLRFLLPALCHLTAEEEGRKILLSNGGWKLLCDDLLKILQSPSGDDDAED  475 (543)
T ss_pred             H--HHHHHHHHHHHhhhhhhcccccccchhHHHHHHHHHhhhhccHHHHHHHHhCCcHHHHHHHHHHHHHhcccCcchhh
Confidence            4  478999999987432          3467778888999999999999999999977776644    22  111    


Q ss_pred             ---HHHHHHHHHHHHhcCCCcchHHHHHhhCCchHHhHHHHHHHhhhc
Q 044999          395 ---ELRDNAAESLINFSEDPLQHERISEAIGIPSFQSMQSRLTRIRAS  439 (461)
Q Consensus       395 ---~~~~~a~~~L~~l~~~~~~~~~l~~~~~~~~~~~l~~~l~~~~~~  439 (461)
                         .--..+|.++.|+........    ....+.+..+++.+.++.++
T Consensus       476 ~~~~~l~~~c~illNl~~~e~~~~----~~~~~~f~~ll~~l~~~~~~  519 (543)
T PF05536_consen  476 SAEMALVTACGILLNLVVTEPKMD----VEEEATFIELLKALLQWADP  519 (543)
T ss_pred             hhHHHHHHHHHHHHHHHhcccccc----cccchHHHHHHHHHHHhcCC
Confidence               134567899999976654331    11456777888888777765

>KOG2973 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.08  E-value=7.9e-08  Score=82.68  Aligned_cols=268  Identities=17%  Similarity=0.174  Sum_probs=188.3

Q ss_pred             HHHHHHhcCCChHHHHHHHHHHHHhhCChHHHHHHH-hcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCchhHHHHHhc
Q 044999          142 EIVIDLLNSCNDGTRRYLLEILSALALLREVRRVLI-CLGGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRARRLLVEL  220 (461)
Q Consensus       142 ~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~-~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~  220 (461)
                      ..+++++.+.+|.++..|+..+..++.. ..+.-.. +...++.+.+++....+  .+.|+.++.|++.....++.+.+.
T Consensus         6 ~elv~ll~~~sP~v~~~AV~~l~~lt~~-~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~~l~~~ll~~   82 (353)
T KOG2973|consen    6 VELVELLHSLSPPVRKAAVEHLLGLTGR-GLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKEELRKKLLQD   82 (353)
T ss_pred             HHHHHHhccCChHHHHHHHHHHhhcccc-chhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhHHHHHHHHHH
Confidence            4578899999999999999999999865 2222221 23468888888887665  678899999999999887777776


Q ss_pred             CChHHHHHhcccCCHHHHHHHHHHHHHHhcCccchhhhhh-------cCCHHHHHHHhCCC-Ch-hHHHHHHHHHHHhcc
Q 044999          221 GVIPGLVELFHIGDWTTKLVAGNTLGVVAAHVEYITPVAE-------AGAIPLYAELLQGP-DS-TGKEISEDVFCILAV  291 (461)
Q Consensus       221 ~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~-------~g~i~~L~~ll~~~-~~-~~~~~a~~~L~~l~~  291 (461)
                       .+..++.++.++....-...+..|.|++..++....+..       .|.+.........+ +. .--...+-.++|++.
T Consensus        83 -~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf~nls~  161 (353)
T KOG2973|consen   83 -LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVFANLSQ  161 (353)
T ss_pred             -HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHHHHHHhh
Confidence             888888888888777888888999999998544333221       34444444444333 22 223445567889999


Q ss_pred             CcccHHHHH-------HHHHHHhccCCHHHH-HHHHHHHHHhhCCCCchhHHhhcC--CHHHHH----------------
Q 044999          292 SEANANAIA-------EHLVRILREGDNEAN-AAAADVLWDLAGYKHSVPVIRNSG--AIPILV----------------  345 (461)
Q Consensus       292 ~~~~~~~i~-------~~l~~ll~~~~~~~~-~~a~~~L~~l~~~~~~~~~l~~~g--~i~~L~----------------  345 (461)
                      ....|..+.       +.+..+ .+.+..+| ...+++|.|.|.....+..+...+  .+|.++                
T Consensus       162 ~~~gR~l~~~~k~~p~~kll~f-t~~~s~vRr~GvagtlkN~cFd~~~h~~lL~e~~~lLp~iLlPlagpee~sEEdm~~  240 (353)
T KOG2973|consen  162 FEAGRKLLLEPKRFPDQKLLPF-TSEDSQVRRGGVAGTLKNCCFDAKLHEVLLDESINLLPAILLPLAGPEELSEEDMAK  240 (353)
T ss_pred             hhhhhhHhcchhhhhHhhhhcc-cccchhhhccchHHHHHhhhccchhHHHHhcchHHHHHHHHhhcCCccccCHHHHhc
Confidence            888887766       222222 33444554 477899999998888877777632  233322                


Q ss_pred             -----Hhhc-----CCCHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhccC-CCHHHHHHHHHHHHHhcCCCcch
Q 044999          346 -----NLLR-----GENDEVREKVSGAIAQLSYNEADRVALADAGAVPIMIELLHD-ESEELRDNAAESLINFSEDPLQH  414 (461)
Q Consensus       346 -----~ll~-----~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~~~~~a~~~L~~l~~~~~~~  414 (461)
                           +++.     .+++.++..-+.+|..||.....|+.+.+.|+-|.+-.+-.. ++++++..+-.....+......+
T Consensus       241 LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT~~GRe~lR~kgvYpilRElhk~e~ded~~~ace~vvq~Lv~~e~~~  320 (353)
T KOG2973|consen  241 LPVELQYLPEDKEREPDPDIRKMLLEALLLLCATRAGREVLRSKGVYPILRELHKWEEDEDIREACEQVVQMLVRLEPEI  320 (353)
T ss_pred             CCHhhhcCCccccCCCChHHHHHHHHHHHHHHhhhHhHHHHHhcCchHHHHHHhcCCCcHHHHHHHHHHHHHHHhccccc
Confidence                 1221     245789999999999999988889999999877766665543 67888887777777776655444

>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.07  E-value=1.4e-08  Score=98.06  Aligned_cols=248  Identities=14%  Similarity=0.065  Sum_probs=195.9

Q ss_pred             HHHHHHHhcC-CChHHHHHHHHHHHHhh--CChHHHHHHHhcCCHHHHHHHHcCC-CHHHHHHHHHHHHHhhcCchh-HH
Q 044999          141 LEIVIDLLNS-CNDGTRRYLLEILSALA--LLREVRRVLICLGGLRYLVEAVSFG-SMVSRERACQAIGLLAVTGRA-RR  215 (461)
Q Consensus       141 i~~L~~ll~~-~~~~~~~~a~~~L~~l~--~~~~~~~~~~~~~~l~~l~~~l~~~-~~~~~~~a~~~L~~l~~~~~~-~~  215 (461)
                      +..|+.-|+. .|+..+..|+.-|+.+.  .+++.-..|--.-.+|.|+.+|++. +.++...|+++|.+|+..-+. ..
T Consensus       169 ~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a  248 (1051)
T KOG0168|consen  169 AKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSA  248 (1051)
T ss_pred             HHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhh
Confidence            3445554444 48888888887776654  5566555554456899999999988 789999999999999988877 88


Q ss_pred             HHHhcCChHHHHHhcc-cCCHHHHHHHHHHHHHHhcCccchhhhhhcCCHHHHHHHhCCCChhHHHHHHHHHHHhcc--C
Q 044999          216 LLVELGVIPGLVELFH-IGDWTTKLVAGNTLGVVAAHVEYITPVAEAGAIPLYAELLQGPDSTGKEISEDVFCILAV--S  292 (461)
Q Consensus       216 ~~~~~~~i~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~--~  292 (461)
                      .+++.++||.|+.-|. -+.-++-+.++.+|..++..  .-..+.+.|++...+..+.-....+|+.|+.+-.|++.  .
T Consensus       249 ~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~--H~~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~  326 (1051)
T KOG0168|consen  249 IVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRR--HPKAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIR  326 (1051)
T ss_pred             eeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhh--ccHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            8899999999998666 56778999999999999984  33467788999999999988888999999999999953  2


Q ss_pred             cc-cHHHH--HHHHHHHhccCCHHHHHHHHHHHHHhhCC----CCchhHHhhcCCHHHHHHhhcCCC----HHHHHHHHH
Q 044999          293 EA-NANAI--AEHLVRILREGDNEANAAAADVLWDLAGY----KHSVPVIRNSGAIPILVNLLRGEN----DEVREKVSG  361 (461)
Q Consensus       293 ~~-~~~~i--~~~l~~ll~~~~~~~~~~a~~~L~~l~~~----~~~~~~l~~~g~i~~L~~ll~~~~----~~v~~~a~~  361 (461)
                      ++ ....+  +|.|..+|...+....+.++-++..++..    ++-.+.++.+|.+....+++....    ..+....++
T Consensus       327 sd~f~~v~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~~vIr  406 (1051)
T KOG0168|consen  327 SDEFHFVMEALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTYTGVIR  406 (1051)
T ss_pred             CccchHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHhcCcccccccchhHHHH
Confidence            22 22222  29999999999999999999999988843    566788999999999999987543    234556677


Q ss_pred             HHHHhcC-ChhhHHHHHhCCChHHHHHhcc
Q 044999          362 AIAQLSY-NEADRVALADAGAVPIMIELLH  390 (461)
Q Consensus       362 ~L~~l~~-~~~~~~~~~~~~~i~~L~~ll~  390 (461)
                      .+..++. ++-....+.+.++...|.+++.
T Consensus       407 mls~msS~~pl~~~tl~k~~I~~~L~~il~  436 (1051)
T KOG0168|consen  407 MLSLMSSGSPLLFRTLLKLDIADTLKRILQ  436 (1051)
T ss_pred             HHHHHccCChHHHHHHHHhhHHHHHHHHHh
Confidence            7888888 6888888888898888888774

>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]

Probab=99.07  E-value=5.7e-07  Score=78.13  Aligned_cols=339  Identities=15%  Similarity=0.161  Sum_probs=238.3

Q ss_pred             HHHHHHHHHhcCCchhHHHHHhcCCHHHHHhcCCCCCHHHHHHHHHHHHHHhccChhhH----HHHHHcCCHHHHHHHhc
Q 044999           74 AAYCLKQIASQADGALATEIGQSGVINSVLRLFPQSDDSFRTVLVKCLRVFVTFGNENR----VIVARNGGLEIVIDLLN  149 (461)
Q Consensus        74 a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~----~~~~~~g~i~~L~~ll~  149 (461)
                      ++.+|-+|..  ..+...  ...+..+.|-.-|..++..++..++..+..+..+.+.+.    ..++..+..+.++....
T Consensus        63 cVscLERLfk--akegah--lapnlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIg  138 (524)
T KOG4413|consen   63 CVSCLERLFK--AKEGAH--LAPNLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIG  138 (524)
T ss_pred             HHHHHHHHHh--hccchh--hchhhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHc
Confidence            6777777776  222211  123456777788888898888888888887776544222    33457899999999999


Q ss_pred             CCChHHHHHHHHHHHHhhCChHHHHHHHhcCCHHHH--HHHHcCCCHHHHHHHHHHHHHhhcCchh-HHHHHhcCChHHH
Q 044999          150 SCNDGTRRYLLEILSALALLREVRRVLICLGGLRYL--VEAVSFGSMVSRERACQAIGLLAVTGRA-RRLLVELGVIPGL  226 (461)
Q Consensus       150 ~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l--~~~l~~~~~~~~~~a~~~L~~l~~~~~~-~~~~~~~~~i~~L  226 (461)
                      ..+..+...|...+..++..+.....+++......+  ..+-...+.-.|...+..+..+.+..+. ......+|.+..|
T Consensus       139 geddeVAkAAiesikrialfpaaleaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlL  218 (524)
T KOG4413|consen  139 GEDDEVAKAAIESIKRIALFPAALEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLL  218 (524)
T ss_pred             CCcHHHHHHHHHHHHHHHhcHHHHHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHH
Confidence            999999999999999999999998888887655543  3333445667788888888888777665 6677778999888


Q ss_pred             HHhccc-CCHHHHHHHHHHHHHHhcCccchhhhhhcCCHHHHHHHhCCC--ChhHHHHHHH----HHHHhccCcccHHHH
Q 044999          227 VELFHI-GDWTTKLVAGNTLGVVAAHVEYITPVAEAGAIPLYAELLQGP--DSTGKEISED----VFCILAVSEANANAI  299 (461)
Q Consensus       227 ~~ll~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~ll~~~--~~~~~~~a~~----~L~~l~~~~~~~~~i  299 (461)
                      ..-++. .+.-++..+......|+..+..++.+...|.+..+..++...  +|--...+..    .+.+.+..+-..+.+
T Consensus       219 eaElkGteDtLVianciElvteLaeteHgreflaQeglIdlicnIIsGadsdPfekfralmgfgkffgkeaimdvseeai  298 (524)
T KOG4413|consen  219 EAELKGTEDTLVIANCIELVTELAETEHGREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFFGKEAIMDVSEEAI  298 (524)
T ss_pred             HHHhcCCcceeehhhHHHHHHHHHHHhhhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcchHHhhcCHHHH
Confidence            887775 677778888888899999899999999999999999998654  3433333333    344444333232322


Q ss_pred             H-------HHHHHHhccCCHHHHHHHHHHHHHhhCCCCchhHHhhcCC--HHHHH-HhhcCCCHHHHHHHHHHHHHhcC-
Q 044999          300 A-------EHLVRILREGDNEANAAAADVLWDLAGYKHSVPVIRNSGA--IPILV-NLLRGENDEVREKVSGAIAQLSY-  368 (461)
Q Consensus       300 ~-------~~l~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~--i~~L~-~ll~~~~~~v~~~a~~~L~~l~~-  368 (461)
                      .       +....++...+|+.++.|+.+++.|.++.+..+.+.+.|-  .+.++ +........-+..++.+|.+++. 
T Consensus       299 cealiiaidgsfEmiEmnDpdaieaAiDalGilGSnteGadlllkTgppaaehllarafdqnahakqeaaihaLaaIage  378 (524)
T KOG4413|consen  299 CEALIIAIDGSFEMIEMNDPDAIEAAIDALGILGSNTEGADLLLKTGPPAAEHLLARAFDQNAHAKQEAAIHALAAIAGE  378 (524)
T ss_pred             HHHHHHHHHhhHHhhhcCCchHHHHHHHHHHhccCCcchhHHHhccCChHHHHHHHHHhcccccchHHHHHHHHHHhhcc
Confidence            2       6777888899999999999999999999999999888765  33333 33332223345566677777665 


Q ss_pred             ---Chhh----HH------HHHh-------CCChHHHHHhccCCCHHHHHHHHHHHHHhcCCCcchHH
Q 044999          369 ---NEAD----RV------ALAD-------AGAVPIMIELLHDESEELRDNAAESLINFSEDPLQHER  416 (461)
Q Consensus       369 ---~~~~----~~------~~~~-------~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~  416 (461)
                         .++.    +.      .+.+       ..-.......++.+.++++..+...+..++..|=+.+.
T Consensus       379 lrlkpeqitDgkaeerlrclifdaaaqstkldPleLFlgilqQpfpEihcAalktfTAiaaqPWalke  446 (524)
T KOG4413|consen  379 LRLKPEQITDGKAEERLRCLIFDAAAQSTKLDPLELFLGILQQPFPEIHCAALKTFTAIAAQPWALKE  446 (524)
T ss_pred             ccCChhhccccHHHHHHHHHHHHHHhhccCCChHHHHHHHHcCCChhhHHHHHHHHHHHHcCcHHHHH
Confidence               2211    00      1111       12234455566778999999999999999888755433

>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]

Probab=99.06  E-value=2.6e-08  Score=90.24  Aligned_cols=273  Identities=22%  Similarity=0.201  Sum_probs=198.6

Q ss_pred             hhHHHHHhcCCHHHHHhcCCCCCHH--HHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhcCC-ChHHHHHHHHHHH
Q 044999           88 ALATEIGQSGVINSVLRLFPQSDDS--FRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLNSC-NDGTRRYLLEILS  164 (461)
Q Consensus        88 ~~~~~~~~~~~l~~L~~ll~~~~~~--~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~-~~~~~~~a~~~L~  164 (461)
                      ..++.+...|++..|++++..++.+  ++..+++.+-...  ..+++..+...| ...++.+.+.. .++.+...+.+|.
T Consensus       171 ~LCD~iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~--~aeN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~  247 (832)
T KOG3678|consen  171 GLCDAIRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQIL--VAENRDRVARIG-LGVILNLAKEREPVELARSVAGILE  247 (832)
T ss_pred             hhhhHhhccchHHHHHHHHhCCchhHHHHHHHHHHHHHHH--hhhhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHH
Confidence            4566788889999999999988755  4778888777554  236788888877 66666666544 4478888999999


Q ss_pred             Hhh-CChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCchh--HHHHHhcCChHHHHHhcccCCHHHHHHH
Q 044999          165 ALA-LLREVRRVLICLGGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRA--RRLLVELGVIPGLVELFHIGDWTTKLVA  241 (461)
Q Consensus       165 ~l~-~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~--~~~~~~~~~i~~L~~ll~~~~~~~~~~a  241 (461)
                      ++- ..++....+++.|++..++......++.+.+.++-+|+|++-+...  ++.|++..+-+.|+.+..+.+.-.+.+|
T Consensus       248 ~mFKHSeet~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~A  327 (832)
T KOG3678|consen  248 HMFKHSEETCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHA  327 (832)
T ss_pred             HHhhhhHHHHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHH
Confidence            999 6677788999999999999999999999999999999999987765  8889998899999999888888899999


Q ss_pred             HHHHHHHhcCccchhhhhhcCCHHHHHHHhCCCChhHHHHHHHHHHHhccCcccHHHHHHHHHHHhccCCHHHHHHHHHH
Q 044999          242 GNTLGVVAAHVEYITPVAEAGAIPLYAELLQGPDSTGKEISEDVFCILAVSEANANAIAEHLVRILREGDNEANAAAADV  321 (461)
Q Consensus       242 ~~~L~~l~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~l~~ll~~~~~~~~~~a~~~  321 (461)
                      |.+.+.++.+.+....+.+.|.+...-.++.+-+|.--..   --..-++.  .-..-.+.|+.+|.+..-+.+..++.-
T Consensus       328 ClAV~vlat~KE~E~~VrkS~TlaLVEPlva~~DP~~FAR---D~hd~aQG--~~~d~LqRLvPlLdS~R~EAq~i~AF~  402 (832)
T KOG3678|consen  328 CLAVAVLATNKEVEREVRKSGTLALVEPLVASLDPGRFAR---DAHDYAQG--RGPDDLQRLVPLLDSNRLEAQCIGAFY  402 (832)
T ss_pred             HHHHhhhhhhhhhhHHHhhccchhhhhhhhhccCcchhhh---hhhhhhcc--CChHHHHHhhhhhhcchhhhhhhHHHH
Confidence            9999999999888888888887766666665555532110   00000000  001111677888887665655544443


Q ss_pred             HHHhhC--CCCc-hhHHhhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcC
Q 044999          322 LWDLAG--YKHS-VPVIRNSGAIPILVNLLRGENDEVREKVSGAIAQLSY  368 (461)
Q Consensus       322 L~~l~~--~~~~-~~~l~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~  368 (461)
                      ++.-+.  ...+ .+.+.+-|.++.|.++.++++..-...|..+|.-+..
T Consensus       403 l~~EAaIKs~Q~K~kVFseIGAIQaLKevaSS~d~vaakfAseALtviGE  452 (832)
T KOG3678|consen  403 LCAEAAIKSLQGKTKVFSEIGAIQALKEVASSPDEVAAKFASEALTVIGE  452 (832)
T ss_pred             HHHHHHHHHhccchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHhcc
Confidence            333221  2233 3445577999999999998776666666677766654

>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=99.04  E-value=1.2e-07  Score=85.24  Aligned_cols=310  Identities=14%  Similarity=0.140  Sum_probs=214.4

Q ss_pred             HHHHHhcCCCCC-HHHHHHHHHHHHHHhccChhhHHHHH------HcCCHHHHHHHhcCCChHHHHHHHHHHHHhhCChH
Q 044999           99 INSVLRLFPQSD-DSFRTVLVKCLRVFVTFGNENRVIVA------RNGGLEIVIDLLNSCNDGTRRYLLEILSALALLRE  171 (461)
Q Consensus        99 l~~L~~ll~~~~-~~~~~~~~~~l~~l~~~~~~~~~~~~------~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~  171 (461)
                      +..++.+++..+ ++........+..+...+......+.      ....-..++.++...+.-+...+.++++.++..-.
T Consensus        67 v~~fi~LlS~~~kdd~v~yvL~li~DmLs~d~sr~~lf~~~a~~~k~~~~~~fl~ll~r~d~~iv~~~~~Ils~la~~g~  146 (442)
T KOG2759|consen   67 VKTFINLLSHIDKDDTVQYVLTLIDDMLSEDRSRVDLFHDYAHKLKRTEWLSFLNLLNRQDTFIVEMSFRILSKLACFGN  146 (442)
T ss_pred             HHHHHHHhchhhhHHHHHHHHHHHHHHHhhCchHHHHHHHHHHhhhccchHHHHHHHhcCChHHHHHHHHHHHHHHHhcc
Confidence            556677777543 34444455455555544433222222      12235668888989888888888888888873222


Q ss_pred             HHHHHHhcC-CHHHHHHHHcC-CCHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhcc--cCCHHHHHHHHHHHHH
Q 044999          172 VRRVLICLG-GLRYLVEAVSF-GSMVSRERACQAIGLLAVTGRARRLLVELGVIPGLVELFH--IGDWTTKLVAGNTLGV  247 (461)
Q Consensus       172 ~~~~~~~~~-~l~~l~~~l~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~--~~~~~~~~~a~~~L~~  247 (461)
                      ..-...+.. ....+-..+++ .+.+....+.++|..+...++.|..+...+++..++..+.  ..+-.++...+.+++.
T Consensus       147 ~~~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~eyR~~~v~adg~~~l~~~l~s~~~~~QlQYqsifciWl  226 (442)
T KOG2759|consen  147 CKMELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRVDEYRYAFVIADGVSLLIRILASTKCGFQLQYQSIFCIWL  226 (442)
T ss_pred             ccccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcCcchhheeeecCcchhhHHHHhccCcchhHHHHHHHHHHH
Confidence            211111111 22334444555 5778889999999999999999999999999999999884  4467889999999999


Q ss_pred             HhcCccchhhhhhcCCHHHHHHHhCCC-ChhHHHHHHHHHHHhccCcc---cH----HHHH----HHHHHHhccC---CH
Q 044999          248 VAAHVEYITPVAEAGAIPLYAELLQGP-DSTGKEISEDVFCILAVSEA---NA----NAIA----EHLVRILREG---DN  312 (461)
Q Consensus       248 l~~~~~~~~~~~~~g~i~~L~~ll~~~-~~~~~~~a~~~L~~l~~~~~---~~----~~i~----~~l~~ll~~~---~~  312 (461)
                      |+.++...+.+...+.++.|..+++.. ...|-+-++.++.|+....+   .+    ..++    +..++.|...   ++
T Consensus       227 LtFn~~~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~~~v~k~l~~L~~rkysDE  306 (442)
T KOG2759|consen  227 LTFNPHAAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVLCKVLKTLQSLEERKYSDE  306 (442)
T ss_pred             hhcCHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCchHHHHHHHhcCCCcH
Confidence            999988888887779999999999876 56788889999999955442   12    2233    5556666332   34


Q ss_pred             HHHHHH-------HHHHHHhhCC---------------C---------CchhHHhhc--CCHHHHHHhhcCCC-HHHHHH
Q 044999          313 EANAAA-------ADVLWDLAGY---------------K---------HSVPVIRNS--GAIPILVNLLRGEN-DEVREK  358 (461)
Q Consensus       313 ~~~~~a-------~~~L~~l~~~---------------~---------~~~~~l~~~--g~i~~L~~ll~~~~-~~v~~~  358 (461)
                      ++....       -.-...|++.               |         +|...+-+.  ..+..|+.+|...+ |.+..-
T Consensus       307 DL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~FW~eNa~rlnennyellkiL~~lLe~s~Dp~iL~V  386 (442)
T KOG2759|consen  307 DLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEKFWRENADRLNENNYELLKILIKLLETSNDPIILCV  386 (442)
T ss_pred             HHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCccccccchHHHhHHHHhhccHHHHHHHHHHHhcCCCCceeeh
Confidence            432211       1111222221               1         233333332  24788999998664 778888


Q ss_pred             HHHHHHHhcC-ChhhHHHHHhCCChHHHHHhccCCCHHHHHHHHHHHHHhc
Q 044999          359 VSGAIAQLSY-NEADRVALADAGAVPIMIELLHDESEELRDNAAESLINFS  408 (461)
Q Consensus       359 a~~~L~~l~~-~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~  408 (461)
                      |+.=++...+ .|+.+..+.+.|+=..+++++++++|+++.+|..++..|.
T Consensus       387 Ac~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm  437 (442)
T KOG2759|consen  387 ACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHEDPEVRYHALLAVQKLM  437 (442)
T ss_pred             hhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCCCchHHHHHHHHHHHHH
Confidence            8888999999 9999999999999999999999999999999999988774

>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]

Probab=99.03  E-value=2.9e-07  Score=86.99  Aligned_cols=381  Identities=18%  Similarity=0.124  Sum_probs=240.4

Q ss_pred             HHHhHHHHHHHhhcC-CHHHHHHHHHHHHhhc-CCCchhH-HHhhHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHhc
Q 044999            8 WEEAFNRFEQAVVSG-SEALQVKALTKLARVS-KFAPQDI-LAATIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQ   84 (461)
Q Consensus         8 ~~~~~~~l~~ll~~~-~~~~~~~a~~~l~~la-~~~~~~~-l~~~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~   84 (461)
                      .+..+|.+.+-+++. +..+|.+-...-+.++ +-...+. ....+..+++.+..      ..+++|+....+|..+...
T Consensus        53 v~~l~~~~~~~l~~~~~~~~~~~~~v~~~~~a~~~~~~d~~~~~~~~~~~~~~~t------ps~~~q~~~~~~l~~~~~~  126 (569)
T KOG1242|consen   53 VLNLKPCFEQRLNSLHNDNLRNNVVVLEGTLAFHLQIVDPRPISIIEILLEELDT------PSKSVQRAVSTCLPPLVVL  126 (569)
T ss_pred             HHHHHHHHHHHhccchhHHHhhhhHHHHHHHHHhccccCcchhHHHHHHHHhcCC------CcHHHHHHHHHHhhhHHHH
Confidence            344556677777765 4455555555566666 4333332 22377888888865      5677999877888887762


Q ss_pred             CCchhHHHHHhcCCHHHHHhcCCCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhcCCChHHHHH-HHHHH
Q 044999           85 ADGALATEIGQSGVINSVLRLFPQSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLNSCNDGTRRY-LLEIL  163 (461)
Q Consensus        85 ~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~-a~~~L  163 (461)
                        ....   ....+.+.+.++++......+..++..+..+....  .-..+.+.+.+..+.+...+.+...+.. +..+.
T Consensus       127 --~~~~---~~~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~--~i~~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~  199 (569)
T KOG1242|consen  127 --SKGL---SGEYVLELLLELLTSTKIAERAGAAYGLAGLVNGL--GIESLKEFGFLDNLSKAIIDKKSALNREAALLAF  199 (569)
T ss_pred             --hhcc---CHHHHHHHHHHHhccccHHHHhhhhHHHHHHHcCc--HHhhhhhhhHHHHHHHHhcccchhhcHHHHHHHH
Confidence              1111   11234677888888888888899999999888533  3466778888999999888776644443 33332


Q ss_pred             HHhh--CChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCchh-HHHHHhcCChHHHHHhcccCCHHHHHH
Q 044999          164 SALA--LLREVRRVLICLGGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRA-RRLLVELGVIPGLVELFHIGDWTTKLV  240 (461)
Q Consensus       164 ~~l~--~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~-~~~~~~~~~i~~L~~ll~~~~~~~~~~  240 (461)
                      ...+  .++..-..++  ..++.++.-..+....+|..+..+...+...-.. .-    .-.++.++.-+....+.....
T Consensus       200 ~~~~~~Lg~~~EPyiv--~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aV----K~llpsll~~l~~~kWrtK~a  273 (569)
T KOG1242|consen  200 EAAQGNLGPPFEPYIV--PILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAV----KLLLPSLLGSLLEAKWRTKMA  273 (569)
T ss_pred             HHHHHhcCCCCCchHH--hhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchh----hHhhhhhHHHHHHHhhhhHHH
Confidence            2222  1122112222  2356666666666778888877776665433222 10    113444444444447788889


Q ss_pred             HHHHHHHHhcCccchhhhhhcCCHHHHHHHhCCCChhHHHHHHHHHHHhccCcccHH--HHHHHHHHHhccCCHHHHHHH
Q 044999          241 AGNTLGVVAAHVEYITPVAEAGAIPLYAELLQGPDSTGKEISEDVFCILAVSEANAN--AIAEHLVRILREGDNEANAAA  318 (461)
Q Consensus       241 a~~~L~~l~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~--~i~~~l~~ll~~~~~~~~~~a  318 (461)
                      ++..++.++...+.+-...-..++|.+.+.|.+.++++++.+..+|..+...-++..  .++|.+++.+..+.-.+. .+
T Consensus       274 slellg~m~~~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~dI~~~ip~Lld~l~dp~~~~~-e~  352 (569)
T KOG1242|consen  274 SLELLGAMADCAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPDIQKIIPTLLDALADPSCYTP-EC  352 (569)
T ss_pred             HHHHHHHHHHhchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhcCcccchH-HH
Confidence            999999998886666666677889999999999999999999999999976555544  334899998877653322 23


Q ss_pred             HHHHHHhhCCCCchhHHhhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcC-C--hhhHHHHHhCCChHHHHHhccCCCHH
Q 044999          319 ADVLWDLAGYKHSVPVIRNSGAIPILVNLLRGENDEVREKVSGAIAQLSY-N--EADRVALADAGAVPIMIELLHDESEE  395 (461)
Q Consensus       319 ~~~L~~l~~~~~~~~~l~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~-~--~~~~~~~~~~~~i~~L~~ll~~~~~~  395 (461)
                      ...|..=........ -.-.=.+|.|.+-+...+..+++.++.++.|++. -  +..-..+.. ..+|.|-..+.+..|+
T Consensus       353 ~~~L~~ttFV~~V~~-psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~-~Llp~lk~~~~d~~PE  430 (569)
T KOG1242|consen  353 LDSLGATTFVAEVDA-PSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLP-SLLPGLKENLDDAVPE  430 (569)
T ss_pred             HHhhcceeeeeeecc-hhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHH-HHhhHHHHHhcCCChh
Confidence            333322221111100 0011124555555666677788999999999999 3  222222222 2466666667677999


Q ss_pred             HHHHHHHHHHHhcCC
Q 044999          396 LRDNAAESLINFSED  410 (461)
Q Consensus       396 ~~~~a~~~L~~l~~~  410 (461)
                      +|..+..+|..+.+.
T Consensus       431 vR~vaarAL~~l~e~  445 (569)
T KOG1242|consen  431 VRAVAARALGALLER  445 (569)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999999766544

>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]

Probab=99.00  E-value=7.5e-07  Score=82.95  Aligned_cols=394  Identities=14%  Similarity=0.099  Sum_probs=222.7

Q ss_pred             CCCCcHHHhHHHHHHHhhcCCH-HHHHHHHHHHHhhc-CCCchhHHHh---hHHHHHHhhccCCCCCCCcHHHHHHHHHH
Q 044999            3 NPDTNWEEAFNRFEQAVVSGSE-ALQVKALTKLARVS-KFAPQDILAA---TIPILARLLGENNFSGNLTRSIQQAAAYC   77 (461)
Q Consensus         3 ~~~~~~~~~~~~l~~ll~~~~~-~~~~~a~~~l~~la-~~~~~~~l~~---~i~~l~~~l~~~~~~~~~~~~~~~~a~~~   77 (461)
                      =|...|.+.++.++.-...+.+ .++..+..++++.+ +..+...+..   ++-.++.--.+    ++.+..++..|+.+
T Consensus       126 lp~~~wp~lm~~mv~nvg~eqp~~~k~~sl~~~gy~ces~~Pe~li~~sN~il~aiv~ga~k----~et~~avRLaaL~a  201 (858)
T COG5215         126 LPNSLWPGLMEEMVRNVGDEQPVSGKCESLGICGYHCESEAPEDLIQMSNVILFAIVMGALK----NETTSAVRLAALKA  201 (858)
T ss_pred             CccccchHHHHHHHHhccccCchHhHHHHHHHHHHHhhccCHHHHHHHhhHHHHHHHHhhcc----cCchHHHHHHHHHH
Confidence            3778899999999998888765 77888999999999 6666555444   44444433333    45556666668888


Q ss_pred             HHHHHhcCCchhHHHHH----hcCCHHHHHhcCCCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhcCCCh
Q 044999           78 LKQIASQADGALATEIG----QSGVINSVLRLFPQSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLNSCND  153 (461)
Q Consensus        78 L~~l~~~~~~~~~~~~~----~~~~l~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~  153 (461)
                      |..=+.    ..+..+-    .+.+++...+.-..++.+++..+..|+..+..-....-+...+.-........+++++.
T Consensus       202 L~dsl~----fv~~nf~~E~erNy~mqvvceatq~~d~e~q~aafgCl~kim~LyY~fm~~ymE~aL~alt~~~mks~nd  277 (858)
T COG5215         202 LMDSLM----FVQGNFCYEEERNYFMQVVCEATQGNDEELQHAAFGCLNKIMMLYYKFMQSYMENALAALTGRFMKSQND  277 (858)
T ss_pred             HHHHHH----HHHHhhcchhhhchhheeeehhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcch
Confidence            877222    1111111    12345666677788899999999999987765444444444454445555667889999


Q ss_pred             HHHHHHHHHHHHhhCCh-HHHHHHH----------------hcCCHHHHHHHHcCC-------CHHH-------------
Q 044999          154 GTRRYLLEILSALALLR-EVRRVLI----------------CLGGLRYLVEAVSFG-------SMVS-------------  196 (461)
Q Consensus       154 ~~~~~a~~~L~~l~~~~-~~~~~~~----------------~~~~l~~l~~~l~~~-------~~~~-------------  196 (461)
                      ++...|++....+|..+ +..-...                -.+++|.++.+|...       ++.+             
T Consensus       278 ~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq  357 (858)
T COG5215         278 EVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQ  357 (858)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHH
Confidence            99999999988887322 1111111                123688888888652       1222             


Q ss_pred             -------------------------HHHHHHHHHHhhcCchh-HHHHHhcCChHHHHHhcccCCHHHHHHHHHHHHHHhc
Q 044999          197 -------------------------RERACQAIGLLAVTGRA-RRLLVELGVIPGLVELFHIGDWTTKLVAGNTLGVVAA  250 (461)
Q Consensus       197 -------------------------~~~a~~~L~~l~~~~~~-~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~  250 (461)
                                               |+.+..+++.+...+.. +..-.-...+|.+..++.++.--++..++++++.++.
T Consensus       358 ~~gd~i~~pVl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad  437 (858)
T COG5215         358 LKGDKIMRPVLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSDSCLWVKSTTAWCFGAIAD  437 (858)
T ss_pred             HhhhHhHHHHHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcccceeehhhHHHHHHHHHHH
Confidence                                     33444444444433332 2221223467777777777777788899999999987


Q ss_pred             C-ccchhhhhhcCCHHH-----HHHHhCCCChhHHHHHHHHHHHhccCcc------------------------------
Q 044999          251 H-VEYITPVAEAGAIPL-----YAELLQGPDSTGKEISEDVFCILAVSEA------------------------------  294 (461)
Q Consensus       251 ~-~~~~~~~~~~g~i~~-----L~~ll~~~~~~~~~~a~~~L~~l~~~~~------------------------------  294 (461)
                      + +..-.   ..|-++.     ++.+.  ++|.+..++.+...||+.+-.                              
T Consensus       438 ~va~~i~---p~~Hl~~~vsa~liGl~--D~p~~~~ncsw~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~~N  512 (858)
T COG5215         438 HVAMIIS---PCGHLVLEVSASLIGLM--DCPFRSINCSWRKENLVDHIAKAVREVESFLAKFYLAILNALVKGTELALN  512 (858)
T ss_pred             HHHHhcC---ccccccHHHHHHHhhhh--ccchHHhhhHHHHHhHHHhhhhhhccccchhHHHHHHHHHHHHHHHHhhcc
Confidence            6 22111   1111111     11111  233444444444444422110                              


Q ss_pred             ---------------------cHHHHH-----------HH----HHHHhccC----CHHHHHHHHHHHHHhhCC-CCchh
Q 044999          295 ---------------------NANAIA-----------EH----LVRILREG----DNEANAAAADVLWDLAGY-KHSVP  333 (461)
Q Consensus       295 ---------------------~~~~i~-----------~~----l~~ll~~~----~~~~~~~a~~~L~~l~~~-~~~~~  333 (461)
                                           .-..+.           +.    +-+.+...    .++++.+-+..|..+.+. +...+
T Consensus       513 e~n~R~s~fsaLgtli~~~~d~V~~~~a~~~~~~~~kl~~~isv~~q~l~~eD~~~~~elqSN~~~vl~aiir~~~~~ie  592 (858)
T COG5215         513 ESNLRVSLFSALGTLILICPDAVSDILAGFYDYTSKKLDECISVLGQILATEDQLLVEELQSNYIGVLEAIIRTRRRDIE  592 (858)
T ss_pred             chhHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence                                 000000           00    00111111    123334444444444321 11111


Q ss_pred             HHhhcCCHHHHHHhhcCCCHH-HHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhccCCCHHHHHHHHHHHHHhcCC
Q 044999          334 VIRNSGAIPILVNLLRGENDE-VREKVSGAIAQLSYNEADRVALADAGAVPIMIELLHDESEELRDNAAESLINFSED  410 (461)
Q Consensus       334 ~l~~~g~i~~L~~ll~~~~~~-v~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~  410 (461)
                      . ++...+..+++++.+.++. +-..+..++.+|+.+-+-+..-.-...+|.|.+-++..+..+...+...+..|+..
T Consensus       593 ~-v~D~lm~Lf~r~les~~~t~~~~dV~~aIsal~~sl~e~Fe~y~~~fiPyl~~aln~~d~~v~~~avglvgdlant  669 (858)
T COG5215         593 D-VEDQLMELFIRILESTKPTTAFGDVYTAISALSTSLEERFEQYASKFIPYLTRALNCTDRFVLNSAVGLVGDLANT  669 (858)
T ss_pred             c-HHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcchhHHHHHHHHHHHHHHHHH
Confidence            1 1222455667777766443 44566777888887444444444556789999989888888888888888887654

>KOG2973 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.96  E-value=1.5e-07  Score=80.92  Aligned_cols=265  Identities=17%  Similarity=0.211  Sum_probs=192.3

Q ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHhhcCchhHHHHH-hcCChHHHHHhcccCCHHHHHHHHHHHHHHhcCccchhhhhh
Q 044999          182 LRYLVEAVSFGSMVSRERACQAIGLLAVTGRARRLLV-ELGVIPGLVELFHIGDWTTKLVAGNTLGVVAAHVEYITPVAE  260 (461)
Q Consensus       182 l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~-~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~  260 (461)
                      ...+++++.+.++.++..|...+..++.. ..+.... +...++.+.+++....+  .+.|+.+|.|++..+..++.+..
T Consensus         5 l~elv~ll~~~sP~v~~~AV~~l~~lt~~-~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~~l~~~ll~   81 (353)
T KOG2973|consen    5 LVELVELLHSLSPPVRKAAVEHLLGLTGR-GLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKEELRKKLLQ   81 (353)
T ss_pred             HHHHHHHhccCChHHHHHHHHHHhhcccc-chhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhHHHHHHHHH
Confidence            34588999999999999999999999877 3333222 24467888888887666  67788899999999988988887


Q ss_pred             cCCHHHHHHHhCCCChhHHHHHHHHHHHhccCcccHHHHH--------HHHHHHhc----cC-C-HHHHHHHHHHHHHhh
Q 044999          261 AGAIPLYAELLQGPDSTGKEISEDVFCILAVSEANANAIA--------EHLVRILR----EG-D-NEANAAAADVLWDLA  326 (461)
Q Consensus       261 ~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~i~--------~~l~~ll~----~~-~-~~~~~~a~~~L~~l~  326 (461)
                      . ++..++..+.++....-...+..|.|++..++....+.        ..+.++.+    .+ + ..--.+.+-++.|++
T Consensus        82 ~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf~nls  160 (353)
T KOG2973|consen   82 D-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVFANLS  160 (353)
T ss_pred             H-HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHHHHHHh
Confidence            7 77788888888878888899999999999887766554        23333332    11 2 123356778899999


Q ss_pred             CCCCchhHHhhcCCHH--HHHHhhcCCCHHHHH-HHHHHHHHhcCChhhHHHHHhCC--ChH------------------
Q 044999          327 GYKHSVPVIRNSGAIP--ILVNLLRGENDEVRE-KVSGAIAQLSYNEADRVALADAG--AVP------------------  383 (461)
Q Consensus       327 ~~~~~~~~l~~~g~i~--~L~~ll~~~~~~v~~-~a~~~L~~l~~~~~~~~~~~~~~--~i~------------------  383 (461)
                      ..+..+..+.....++  .+..+-. .+..+|. ..+.+|.|+|.+..++..+.+.+  .+|                  
T Consensus       161 ~~~~gR~l~~~~k~~p~~kll~ft~-~~s~vRr~GvagtlkN~cFd~~~h~~lL~e~~~lLp~iLlPlagpee~sEEdm~  239 (353)
T KOG2973|consen  161 QFEAGRKLLLEPKRFPDQKLLPFTS-EDSQVRRGGVAGTLKNCCFDAKLHEVLLDESINLLPAILLPLAGPEELSEEDMA  239 (353)
T ss_pred             hhhhhhhHhcchhhhhHhhhhcccc-cchhhhccchHHHHHhhhccchhHHHHhcchHHHHHHHHhhcCCccccCHHHHh
Confidence            9999999888766433  3444434 4445554 67789999999777777766532  122                  


Q ss_pred             ---HHHHhc-----cCCCHHHHHHHHHHHHHhcCCCcchHHHHHhhCCchHHhHHHHHHHhhhchhHHHHHHHHHhHhhh
Q 044999          384 ---IMIELL-----HDESEELRDNAAESLINFSEDPLQHERISEAIGIPSFQSMQSRLTRIRASDDLMARSMRRMSIEQL  455 (461)
Q Consensus       384 ---~L~~ll-----~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~  455 (461)
                         .=++++     +.+++.++..-..+|..|+....+|+.++.-|+-+.++    .++++-  .++.++++....+..+
T Consensus       240 ~LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT~~GRe~lR~kgvYpilR----Elhk~e--~ded~~~ace~vvq~L  313 (353)
T KOG2973|consen  240 KLPVELQYLPEDKEREPDPDIRKMLLEALLLLCATRAGREVLRSKGVYPILR----ELHKWE--EDEDIREACEQVVQML  313 (353)
T ss_pred             cCCHhhhcCCccccCCCChHHHHHHHHHHHHHHhhhHhHHHHHhcCchHHHH----HHhcCC--CcHHHHHHHHHHHHHH
Confidence               222444     23689999999999999999999999998877766655    455565  4777877777766665


Q ss_pred             cc
Q 044999          456 TW  457 (461)
Q Consensus       456 ~~  457 (461)
                      ..
T Consensus       314 v~  315 (353)
T KOG2973|consen  314 VR  315 (353)
T ss_pred             Hh
Confidence            54

>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]

Probab=98.95  E-value=2e-06  Score=82.53  Aligned_cols=372  Identities=13%  Similarity=0.116  Sum_probs=200.6

Q ss_pred             cCCHHHHHHHHHHHHhhcCCCchhHHHh-hHHHHHHhhccCCCCCCCcHHHHHH-HHHHHHHHHhcCCchhHHHHHhcCC
Q 044999           21 SGSEALQVKALTKLARVSKFAPQDILAA-TIPILARLLGENNFSGNLTRSIQQA-AAYCLKQIASQADGALATEIGQSGV   98 (461)
Q Consensus        21 ~~~~~~~~~a~~~l~~la~~~~~~~l~~-~i~~l~~~l~~~~~~~~~~~~~~~~-a~~~L~~l~~~~~~~~~~~~~~~~~   98 (461)
                      +.|+.||...+++++..+        .. .++.++-+|+.  +-++.....-++ +..+..+++.  -..+.....-.+.
T Consensus       487 n~deYVRnttarafavva--------salgip~llpfLka--vc~SkkSwqaRhTgIkivqqIai--l~Gcsvlphl~~l  554 (1172)
T KOG0213|consen  487 NKDEYVRNTTARAFAVVA--------SALGIPALLPFLKA--VCGSKKSWQARHTGIKIVQQIAI--LSGCSVLPHLKPL  554 (1172)
T ss_pred             cccHHHHHHHHHHHHHHH--------HHhCcHHHHHHHHH--HhccccchhhhchhhHHHHHHHH--HhcchhhhhhHHH
Confidence            467788888888777666        11 33443333332  002221222333 7777777776  3333322222334


Q ss_pred             HHHHHhcCCCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHh----cCCChHHHHHHHHHHHHhh-CChHHH
Q 044999           99 INSVLRLFPQSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLL----NSCNDGTRRYLLEILSALA-LLREVR  173 (461)
Q Consensus        99 l~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll----~~~~~~~~~~a~~~L~~l~-~~~~~~  173 (461)
                      +..+-..+.+....++..++.++..++.......-     +.++.+++.|    +.........-+.++..++ ..+..-
T Consensus       555 v~ii~~gl~De~qkVR~itAlalsalaeaa~Pygi-----e~fDsVlkpLwkgir~hrgk~laafLkAigyliplmd~ey  629 (1172)
T KOG0213|consen  555 VKIIEHGLKDEQQKVRTITALALSALAEAATPYGI-----EQFDSVLKPLWKGIRQHRGKELAAFLKAIGYLIPLMDAEY  629 (1172)
T ss_pred             HHHHHHhhcccchhhhhHHHHHHHHHHHhcCCcch-----HHHHHHHHHHHHHHHHccChHHHHHHHHHhhccccccHHH
Confidence            55555667778888899999999888763322211     1122333332    2222233344445666666 222222


Q ss_pred             HHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhc-----------------------
Q 044999          174 RVLICLGGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRARRLLVELGVIPGLVELF-----------------------  230 (461)
Q Consensus       174 ~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll-----------------------  230 (461)
                      .......++..+.+-..+++++.+...+..+..++..............++.++..+                       
T Consensus       630 a~yyTrevmlil~rEf~sPDeemkkivLKVv~qcc~t~Gv~~~y~r~dilp~ff~~fw~rrmA~drr~ykqlv~ttv~ia  709 (1172)
T KOG0213|consen  630 ASYYTREVMLILIREFGSPDEEMKKIVLKVVKQCCATDGVEPAYIRFDILPEFFFSFWGRRMALDRRNYKQLVDTTVEIA  709 (1172)
T ss_pred             HHHhHHHHHHHHHHhhCCChHHHHHHHHHHHHHHhcccCCCHHHHhhhhhHHHHhhhhhhhhhccccchhhHHHHHHHHH
Confidence            222333456667777778888888888888888877664422222333344443333                       


Q ss_pred             ----------------ccCCHHHHHHHHHHHHHHhcC---ccchhhhhhcCCHHHHHHHhCCCC--hhHHHHHHHHHHHh
Q 044999          231 ----------------HIGDWTTKLVAGNTLGVVAAH---VEYITPVAEAGAIPLYAELLQGPD--STGKEISEDVFCIL  289 (461)
Q Consensus       231 ----------------~~~~~~~~~~a~~~L~~l~~~---~~~~~~~~~~g~i~~L~~ll~~~~--~~~~~~a~~~L~~l  289 (461)
                                      +++.+..+...+.++..+...   .+.-.. .+...+..++..++..+  ..+......+..|-
T Consensus       710 ~KvG~~~~v~R~v~~lkde~e~yrkm~~etv~ri~~~lg~~dider-leE~lidgil~Afqeqtt~d~vml~gfg~V~~~  788 (1172)
T KOG0213|consen  710 AKVGSDPIVSRVVLDLKDEPEQYRKMVAETVSRIVGRLGAADIDER-LEERLIDGILYAFQEQTTEDSVMLLGFGTVVNA  788 (1172)
T ss_pred             HHhCchHHHHHHhhhhccccHHHHHHHHHHHHHHHhccccccccHH-HHHHHHHHHHHHHHhcccchhhhhhhHHHHHHH
Confidence                            233333333333333322211   000000 01111233333333221  12222222222221


Q ss_pred             --ccCcccHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCc---hhHHhhcCCHHHHHHhhcCCCHHHHHHHHHHHH
Q 044999          290 --AVSEANANAIAEHLVRILREGDNEANAAAADVLWDLAGYKHS---VPVIRNSGAIPILVNLLRGENDEVREKVSGAIA  364 (461)
Q Consensus       290 --~~~~~~~~~i~~~l~~ll~~~~~~~~~~a~~~L~~l~~~~~~---~~~l~~~g~i~~L~~ll~~~~~~v~~~a~~~L~  364 (461)
                        ......-.++...++..|++.++.+|..|+..+..++..-..   -+.+...|  -.|.+.+....|++.-..+.++.
T Consensus       789 lg~r~kpylpqi~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lG--vvLyEylgeeypEvLgsILgAik  866 (1172)
T KOG0213|consen  789 LGGRVKPYLPQICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLG--VVLYEYLGEEYPEVLGSILGAIK  866 (1172)
T ss_pred             HhhccccchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhh--HHHHHhcCcccHHHHHHHHHHHH
Confidence              111223334447777888999999999999999999853222   22233333  34788999889998887777777


Q ss_pred             HhcCChhhH-HHHHhCCChHHHHHhccCCCHHHHHHHHHHHHHhcCCCc
Q 044999          365 QLSYNEADR-VALADAGAVPIMIELLHDESEELRDNAAESLINFSEDPL  412 (461)
Q Consensus       365 ~l~~~~~~~-~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~  412 (461)
                      .+....+.. ..---.+.+|.|.-+|++.+..++.++...+..++....
T Consensus       867 aI~nvigm~km~pPi~dllPrltPILknrheKVqen~IdLvg~Iadrgp  915 (1172)
T KOG0213|consen  867 AIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGP  915 (1172)
T ss_pred             HHHHhccccccCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCc
Confidence            766522111 111124679999999999999999999999999986653

>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]

Probab=98.93  E-value=7.6e-06  Score=76.49  Aligned_cols=392  Identities=11%  Similarity=0.002  Sum_probs=239.2

Q ss_pred             cHHHhHHHHHHHhhc--CCHHHHHHHHHHHHhhc--CCCch-hHHH-----------hhH-HHHHHhhccCCCCCCCcHH
Q 044999            7 NWEEAFNRFEQAVVS--GSEALQVKALTKLARVS--KFAPQ-DILA-----------ATI-PILARLLGENNFSGNLTRS   69 (461)
Q Consensus         7 ~~~~~~~~l~~ll~~--~~~~~~~~a~~~l~~la--~~~~~-~~l~-----------~~i-~~l~~~l~~~~~~~~~~~~   69 (461)
                      +.++.+-.+.+.+-+  ..+..|..|..+|.|-.  ++..+ ....           +-+ ...++.|.+      ..|.
T Consensus        36 dF~qf~~ll~qvl~d~ns~~~~Rm~agl~LKN~l~a~d~~~~~~~~qrW~~~~~E~k~qvK~~al~aL~s------~epr  109 (858)
T COG5215          36 DFEQFISLLVQVLCDLNSNDQLRMVAGLILKNSLHANDPELQKGCSQRWLGMRHESKEQVKGMALRALKS------PEPR  109 (858)
T ss_pred             cHHHHHHHHHHHHhccCCcHHHHHHHHHHHhhhhhcCCHHHHHHHHHhhccCCHHHHHHHHHHHHHHhcC------CccH
Confidence            455555555555554  35788888888887755  32222 1221           122 234566765      3344


Q ss_pred             HHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHhcCCCCCH-HHHHHHHHHHHHHhccChhhHHHHHHcC-CHHHHHH-
Q 044999           70 IQQAAAYCLKQIASQADGALATEIGQSGVINSVLRLFPQSDD-SFRTVLVKCLRVFVTFGNENRVIVARNG-GLEIVID-  146 (461)
Q Consensus        70 ~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~ll~~~~~-~~~~~~~~~l~~l~~~~~~~~~~~~~~g-~i~~L~~-  146 (461)
                      .-..|+..+..++...-+...    =.|....+++..-.+.| ..+..+...+.+.+.+... ...+..++ ++..++. 
T Consensus       110 ~~~~Aaql~aaIA~~Elp~~~----wp~lm~~mv~nvg~eqp~~~k~~sl~~~gy~ces~~P-e~li~~sN~il~aiv~g  184 (858)
T COG5215         110 FCTMAAQLLAAIARMELPNSL----WPGLMEEMVRNVGDEQPVSGKCESLGICGYHCESEAP-EDLIQMSNVILFAIVMG  184 (858)
T ss_pred             HHHHHHHHHHHHHHhhCcccc----chHHHHHHHHhccccCchHhHHHHHHHHHHHhhccCH-HHHHHHhhHHHHHHHHh
Confidence            444588899998874111000    01223444444444444 3455666677777754322 33333332 2333333 


Q ss_pred             HhcC-CChHHHHHHHHHHHHhh-CChHHHHHHH-hcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCch-hHHHHHhcCC
Q 044999          147 LLNS-CNDGTRRYLLEILSALA-LLREVRRVLI-CLGGLRYLVEAVSFGSMVSRERACQAIGLLAVTGR-ARRLLVELGV  222 (461)
Q Consensus       147 ll~~-~~~~~~~~a~~~L~~l~-~~~~~~~~~~-~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~-~~~~~~~~~~  222 (461)
                      .+++ .+..+|..|+.+|.+-+ .-..+-..-. ..-+++..++.-+.++.+++..+..|+..+..-.- ......+...
T Consensus       185 a~k~et~~avRLaaL~aL~dsl~fv~~nf~~E~erNy~mqvvceatq~~d~e~q~aafgCl~kim~LyY~fm~~ymE~aL  264 (858)
T COG5215         185 ALKNETTSAVRLAALKALMDSLMFVQGNFCYEEERNYFMQVVCEATQGNDEELQHAAFGCLNKIMMLYYKFMQSYMENAL  264 (858)
T ss_pred             hcccCchHHHHHHHHHHHHHHHHHHHHhhcchhhhchhheeeehhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333 35588999999998733 2111111111 11256667778888899999999999998865443 3445556556


Q ss_pred             hHHHHHhcccCCHHHHHHHHHHHHHHhcCc-cch--------------hhh--hhcCCHHHHHHHhCCC-------ChhH
Q 044999          223 IPGLVELFHIGDWTTKLVAGNTLGVVAAHV-EYI--------------TPV--AEAGAIPLYAELLQGP-------DSTG  278 (461)
Q Consensus       223 i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~-~~~--------------~~~--~~~g~i~~L~~ll~~~-------~~~~  278 (461)
                      .......+++++.++...++.....++..+ +..              ...  .-..++|.|+++|...       ++.+
T Consensus       265 ~alt~~~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~  344 (858)
T COG5215         265 AALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNP  344 (858)
T ss_pred             HHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccch
Confidence            677777888999999999888887776541 100              000  0123688899998642       4567


Q ss_pred             HHHHHHHHHHhccCcccH--HHHHHHHHHHhccCCHHHHHHHHHHHHHhhCCC-CchhHHhhcCCHHHHHHhhcCCCHHH
Q 044999          279 KEISEDVFCILAVSEANA--NAIAEHLVRILREGDNEANAAAADVLWDLAGYK-HSVPVIRNSGAIPILVNLLRGENDEV  355 (461)
Q Consensus       279 ~~~a~~~L~~l~~~~~~~--~~i~~~l~~ll~~~~~~~~~~a~~~L~~l~~~~-~~~~~l~~~g~i~~L~~ll~~~~~~v  355 (461)
                      ...|..+|.-++....+.  .-+...+-+-++++++.-++.|+.+++.+-..| +....-.-+..+|.+...+.++.-.+
T Consensus       345 smaA~sCLqlfaq~~gd~i~~pVl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D~~l~v  424 (858)
T COG5215         345 SMAASSCLQLFAQLKGDKIMRPVLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSDSCLWV  424 (858)
T ss_pred             hhhHHHHHHHHHHHhhhHhHHHHHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcccceeeh
Confidence            777777777766543221  112255556678889999999999999998654 22333334578999999999888899


Q ss_pred             HHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhc---cCCCHHHHHHHHHHHHHhcCCC
Q 044999          356 REKVSGAIAQLSYNEADRVALADAGAVPIMIELL---HDESEELRDNAAESLINFSEDP  411 (461)
Q Consensus       356 ~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll---~~~~~~~~~~a~~~L~~l~~~~  411 (461)
                      +..++|+++.++.  .....+-..|-++..++..   -.++|.+..+++|...|+..+-
T Consensus       425 k~ttAwc~g~iad--~va~~i~p~~Hl~~~vsa~liGl~D~p~~~~ncsw~~~nlv~h~  481 (858)
T COG5215         425 KSTTAWCFGAIAD--HVAMIISPCGHLVLEVSASLIGLMDCPFRSINCSWRKENLVDHI  481 (858)
T ss_pred             hhHHHHHHHHHHH--HHHHhcCccccccHHHHHHHhhhhccchHHhhhHHHHHhHHHhh
Confidence            9999999999985  2233444445455444432   2368888999999999997653

>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]

Probab=98.93  E-value=1.4e-07  Score=85.60  Aligned_cols=266  Identities=15%  Similarity=0.126  Sum_probs=194.1

Q ss_pred             HHHhHHHHHHHhhcCCH--HHHHHHHHHHHhhcCCCchhHHHh-hHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHhc
Q 044999            8 WEEAFNRFEQAVVSGSE--ALQVKALTKLARVSKFAPQDILAA-TIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQ   84 (461)
Q Consensus         8 ~~~~~~~l~~ll~~~~~--~~~~~a~~~l~~la~~~~~~~l~~-~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~   84 (461)
                      ....+..++.++.+.+.  .||..|++.|..+...++++.+.+ .+..++.+-+     ..+.++.++..+..|.++...
T Consensus       178 ~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~aeN~d~va~~~~~~Il~lAK-----~~e~~e~aR~~~~il~~mFKH  252 (832)
T KOG3678|consen  178 LDGGLDLLLRMFQAPNLETSVRVEAARLLEQILVAENRDRVARIGLGVILNLAK-----EREPVELARSVAGILEHMFKH  252 (832)
T ss_pred             ccchHHHHHHHHhCCchhHHHHHHHHHHHHHHHhhhhhhHHhhccchhhhhhhh-----hcCcHHHHHHHHHHHHHHhhh
Confidence            34567888888888765  559999999988887777777777 7777777665     445677888899999999997


Q ss_pred             CCchhHHHHHhcCCHHHHHhcCCCCCHHHHHHHHHHHHHHhc-cChhhHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHH
Q 044999           85 ADGALATEIGQSGVINSVLRLFPQSDDSFRTVLVKCLRVFVT-FGNENRVIVARNGGLEIVIDLLNSCNDGTRRYLLEIL  163 (461)
Q Consensus        85 ~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~l~~-~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L  163 (461)
                       .++.+..++..|++..++-.++..+|.+.+.++.++.|.+. ...+.+..+++..+.+.|+-+..+.|+-.|..||-+.
T Consensus       253 -Seet~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~AClAV  331 (832)
T KOG3678|consen  253 -SEETCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHACLAV  331 (832)
T ss_pred             -hHHHHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHHHHH
Confidence             67777788899999999999999999999999999997665 4557788899998999999998888999999999999


Q ss_pred             HHhhCChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhcccCCHHHHHHHHH
Q 044999          164 SALALLREVRRVLICLGGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRARRLLVELGVIPGLVELFHIGDWTTKLVAGN  243 (461)
Q Consensus       164 ~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~  243 (461)
                      +.++.+.+....+-..|.+..+-.++.+-++.-          ++.+......=....-++.|+.+|++...+.+..++-
T Consensus       332 ~vlat~KE~E~~VrkS~TlaLVEPlva~~DP~~----------FARD~hd~aQG~~~d~LqRLvPlLdS~R~EAq~i~AF  401 (832)
T KOG3678|consen  332 AVLATNKEVEREVRKSGTLALVEPLVASLDPGR----------FARDAHDYAQGRGPDDLQRLVPLLDSNRLEAQCIGAF  401 (832)
T ss_pred             hhhhhhhhhhHHHhhccchhhhhhhhhccCcch----------hhhhhhhhhccCChHHHHHhhhhhhcchhhhhhhHHH
Confidence            999999999888888887766656665555421          1111111000011235788899998766665554432


Q ss_pred             HHHHHh--cCccchhhh-hhcCCHHHHHHHhCCCChhHHHHHHHHHHHh
Q 044999          244 TLGVVA--AHVEYITPV-AEAGAIPLYAELLQGPDSTGKEISEDVFCIL  289 (461)
Q Consensus       244 ~L~~l~--~~~~~~~~~-~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l  289 (461)
                      -++.=+  ....++..+ -+-|.|..|-++..+++......|..+|.-+
T Consensus       402 ~l~~EAaIKs~Q~K~kVFseIGAIQaLKevaSS~d~vaakfAseALtvi  450 (832)
T KOG3678|consen  402 YLCAEAAIKSLQGKTKVFSEIGAIQALKEVASSPDEVAAKFASEALTVI  450 (832)
T ss_pred             HHHHHHHHHHhccchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHh
Confidence            222111  113444444 4559999999998877766666666666655

>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.92  E-value=5.3e-06  Score=80.53  Aligned_cols=374  Identities=14%  Similarity=0.124  Sum_probs=222.7

Q ss_pred             HHHHHHhhcCCHHHHHHHHHHHHhhcCCCchhHHHhhHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHhcCCchhHHH
Q 044999           13 NRFEQAVVSGSEALQVKALTKLARVSKFAPQDILAATIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQADGALATE   92 (461)
Q Consensus        13 ~~l~~ll~~~~~~~~~~a~~~l~~la~~~~~~~l~~~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~   92 (461)
                      +.+-+-|++.+..++-.|..+|++++++   +..+...|.+-++++.      .++-+++-|+.|..++... .++..+ 
T Consensus       110 NslknDL~s~nq~vVglAL~alg~i~s~---EmardlapeVe~Ll~~------~~~~irKKA~Lca~r~irK-~P~l~e-  178 (866)
T KOG1062|consen  110 NSLKNDLNSSNQYVVGLALCALGNICSP---EMARDLAPEVERLLQH------RDPYIRKKAALCAVRFIRK-VPDLVE-  178 (866)
T ss_pred             HHHHhhccCCCeeehHHHHHHhhccCCH---HHhHHhhHHHHHHHhC------CCHHHHHHHHHHHHHHHHc-CchHHH-
Confidence            4455566778888888899999999832   2223367788888886      5567888899999999985 333322 


Q ss_pred             HHhcCCHHHHHhcCCCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhcC---------------CChHHHH
Q 044999           93 IGQSGVINSVLRLFPQSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLNS---------------CNDGTRR  157 (461)
Q Consensus        93 ~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll~~---------------~~~~~~~  157 (461)
                          .+++...++|.+.++.|-..+...+..++..+++.-..+.+  .++.|+..|+.               ++|-++.
T Consensus       179 ----~f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~--l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi  252 (866)
T KOG1062|consen  179 ----HFVIAFRKLLCEKHHGVLIAGLHLITELCKISPDALSYFRD--LVPSLVKILKQLTNSGYSPEYDVHGISDPFLQI  252 (866)
T ss_pred             ----HhhHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHHHH--HHHHHHHHHHHHhcCCCCCccCccCCCchHHHH
Confidence                24566778888888887777777777888877666666655  45555554431               3567788


Q ss_pred             HHHHHHHHhhC-ChHHHHHHHhc--------------C------CHHHHHHHHcCCCHHHHHHHHHHHHHhhcCchh-HH
Q 044999          158 YLLEILSALAL-LREVRRVLICL--------------G------GLRYLVEAVSFGSMVSRERACQAIGLLAVTGRA-RR  215 (461)
Q Consensus       158 ~a~~~L~~l~~-~~~~~~~~~~~--------------~------~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~-~~  215 (461)
                      ..++.|.-+.. +.+..+.+-+-              |      ++.++..+  ..+..+|..|+.+|+.+..+++. -+
T Consensus       253 ~iLrlLriLGq~d~daSd~M~DiLaqvatntdsskN~GnAILYE~V~TI~~I--~~~~~LrvlainiLgkFL~n~d~Nir  330 (866)
T KOG1062|consen  253 RILRLLRILGQNDADASDLMNDILAQVATNTDSSKNAGNAILYECVRTIMDI--RSNSGLRVLAINILGKFLLNRDNNIR  330 (866)
T ss_pred             HHHHHHHHhcCCCccHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhc--cCCchHHHHHHHHHHHHhcCCcccee
Confidence            88877777773 33332222110              1      12222211  22456777777777777666654 32


Q ss_pred             HHHh----------cC----ChHHHHHhcccCCHHHHHHHHHHHHHHhcCccchhhhhhcCCHHHHHHHhCCCChhHHHH
Q 044999          216 LLVE----------LG----VIPGLVELFHIGDWTTKLVAGNTLGVVAAHVEYITPVAEAGAIPLYAELLQGPDSTGKEI  281 (461)
Q Consensus       216 ~~~~----------~~----~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~  281 (461)
                      ++.=          ..    -=..+++++++++..+++.|+..+..|......+ .+     +..|+..|.+.+++.+..
T Consensus       331 YvaLn~L~r~V~~d~~avqrHr~tIleCL~DpD~SIkrralELs~~lvn~~Nv~-~m-----v~eLl~fL~~~d~~~k~~  404 (866)
T KOG1062|consen  331 YVALNMLLRVVQQDPTAVQRHRSTILECLKDPDVSIKRRALELSYALVNESNVR-VM-----VKELLEFLESSDEDFKAD  404 (866)
T ss_pred             eeehhhHHhhhcCCcHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhccccHH-HH-----HHHHHHHHHhccHHHHHH
Confidence            2210          11    1246778888999999999998888877654433 33     678888888889999988


Q ss_pred             HHHHHHHhc--cCcccHHHHH------------------HHHHHHhccCCHH-------------------------HHH
Q 044999          282 SEDVFCILA--VSEANANAIA------------------EHLVRILREGDNE-------------------------ANA  316 (461)
Q Consensus       282 a~~~L~~l~--~~~~~~~~i~------------------~~l~~ll~~~~~~-------------------------~~~  316 (461)
                      .+.-+..++  ..|+.++.+-                  ..++.++.+..++                         ...
T Consensus       405 ~as~I~~laEkfaP~k~W~idtml~Vl~~aG~~V~~dv~~nll~LIa~~~~e~~~y~~~rLy~a~~~~~~~~is~e~l~q  484 (866)
T KOG1062|consen  405 IASKIAELAEKFAPDKRWHIDTMLKVLKTAGDFVNDDVVNNLLRLIANAFQELHEYAVLRLYLALSEDTLLDISQEPLLQ  484 (866)
T ss_pred             HHHHHHHHHHhcCCcchhHHHHHHHHHHhcccccchhhHHHHHHHHhcCCcchhhHHHHHHHHHHhhhhhhhhhhhhHHH
Confidence            888888874  4555555443                  4455555444111                         223


Q ss_pred             HHHHHHHHhhC---CC---CchhHHhhcCCHHHHHHhhcC--CCHHHHHHHHHHHHHhcC-ChhhHHHHHhCCChHHHHH
Q 044999          317 AAADVLWDLAG---YK---HSVPVIRNSGAIPILVNLLRG--ENDEVREKVSGAIAQLSY-NEADRVALADAGAVPIMIE  387 (461)
Q Consensus       317 ~a~~~L~~l~~---~~---~~~~~l~~~g~i~~L~~ll~~--~~~~v~~~a~~~L~~l~~-~~~~~~~~~~~~~i~~L~~  387 (461)
                      -+.|+|+.-..   +.   +.-..+-+..++..|.+++.+  .+..++..++.++..|+. ......+      +..|+.
T Consensus       485 Va~W~IGEYGdlll~~~~~~~p~~vtesdivd~l~~v~~~~~s~~~tk~yal~Al~KLSsr~~s~~~r------i~~lI~  558 (866)
T KOG1062|consen  485 VASWCIGEYGDLLLDGANEEEPIKVTESDIVDKLEKVLMSHSSDSTTKGYALTALLKLSSRFHSSSER------IKQLIS  558 (866)
T ss_pred             HHHHHhhhhhHHhhcCccccCCCcCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhhccccHHH------HHHHHH
Confidence            34444443321   11   111112233455666666553  346677778888887776 3322111      223332


Q ss_pred             -hccCCCHHHHHHHHHHHHHhcCCCcchHHH
Q 044999          388 -LLHDESEELRDNAAESLINFSEDPLQHERI  417 (461)
Q Consensus       388 -ll~~~~~~~~~~a~~~L~~l~~~~~~~~~l  417 (461)
                       +-.+.+-++|+.+.+.=.-+..+..-++.+
T Consensus       559 ~~~~s~~~elQQRa~E~~~l~~~~~~lr~si  589 (866)
T KOG1062|consen  559 SYKSSLDTELQQRAVEYNALFAKDKHLRKSI  589 (866)
T ss_pred             HhcccccHHHHHHHHHHHHHHHHHHHHHHHh
Confidence             234567777777776444444444444444

>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]

Probab=98.90  E-value=2.2e-06  Score=81.19  Aligned_cols=359  Identities=14%  Similarity=0.071  Sum_probs=229.5

Q ss_pred             cHHHhHHHHHHHhhcCCHHHHHHHHHHHHhhc-CCCchhHHHhhHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHhcC
Q 044999            7 NWEEAFNRFEQAVVSGSEALQVKALTKLARVS-KFAPQDILAATIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQA   85 (461)
Q Consensus         7 ~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~la-~~~~~~~l~~~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~   85 (461)
                      .....++.+..-++...+.+++....++..+. ..... ......+.+.+++..      .+...+..++..+..+..+ 
T Consensus        93 ~~~~~~~~~~~~~~tps~~~q~~~~~~l~~~~~~~~~~-~~~~~l~~l~~ll~~------~~~~~~~~aa~~~ag~v~g-  164 (569)
T KOG1242|consen   93 RPISIIEILLEELDTPSKSVQRAVSTCLPPLVVLSKGL-SGEYVLELLLELLTS------TKIAERAGAAYGLAGLVNG-  164 (569)
T ss_pred             chhHHHHHHHHhcCCCcHHHHHHHHHHhhhHHHHhhcc-CHHHHHHHHHHHhcc------ccHHHHhhhhHHHHHHHcC-
Confidence            34456677777788888888888888887766 22111 111245556666654      4455677788999988863 


Q ss_pred             CchhHHHHHhcCCHHHHHhcCCCCCHHHHHH-HHHHHHHHhccChhhHHHHHHcCC---HHHHHHHhcCCChHHHHHHHH
Q 044999           86 DGALATEIGQSGVINSVLRLFPQSDDSFRTV-LVKCLRVFVTFGNENRVIVARNGG---LEIVIDLLNSCNDGTRRYLLE  161 (461)
Q Consensus        86 ~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~-~~~~l~~l~~~~~~~~~~~~~~g~---i~~L~~ll~~~~~~~~~~a~~  161 (461)
                        -....+.+.+++..+.+...+......+. +..+.......-    ....+.+.   ++.++.-.++..+.+|..|..
T Consensus       165 --~~i~~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~L----g~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~  238 (569)
T KOG1242|consen  165 --LGIESLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNL----GPPFEPYIVPILPSILTNFGDKINKVREAAVE  238 (569)
T ss_pred             --cHHhhhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhc----CCCCCchHHhhHHHHHHHhhccchhhhHHHHH
Confidence              23345556778888888888766554443 222222222111    01122233   444444455667788888877


Q ss_pred             HHHHhhC--ChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhcccCCHHHHH
Q 044999          162 ILSALAL--LREVRRVLICLGGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRARRLLVELGVIPGLVELFHIGDWTTKL  239 (461)
Q Consensus       162 ~L~~l~~--~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~  239 (461)
                      +...+..  +....+.     .++.++.-+....+..+..++..++.++...+.+-...-..++|.+.+.|.+..++++.
T Consensus       239 a~kai~~~~~~~aVK~-----llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs~~lp~iiP~lsevl~DT~~evr~  313 (569)
T KOG1242|consen  239 AAKAIMRCLSAYAVKL-----LLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEVLWDTKPEVRK  313 (569)
T ss_pred             HHHHHHHhcCcchhhH-----hhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHccCCHHHHH
Confidence            7665541  1111111     34444444444477888899999999999988877777788999999999999999999


Q ss_pred             HHHHHHHHHhcCccchhhhhhcCCHHHHHHHhCCCChhHHHHHHHHHHHhc----cCcccHHHHHHHHHHHhccCCHHHH
Q 044999          240 VAGNTLGVVAAHVEYITPVAEAGAIPLYAELLQGPDSTGKEISEDVFCILA----VSEANANAIAEHLVRILREGDNEAN  315 (461)
Q Consensus       240 ~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~----~~~~~~~~i~~~l~~ll~~~~~~~~  315 (461)
                      .+..++..++.-.++.. +  ...+|.|++.+.++...+.+ +...|..-+    ..+.....++|.|-+-+...+...+
T Consensus       314 a~~~~l~~~~svidN~d-I--~~~ip~Lld~l~dp~~~~~e-~~~~L~~ttFV~~V~~psLalmvpiL~R~l~eRst~~k  389 (569)
T KOG1242|consen  314 AGIETLLKFGSVIDNPD-I--QKIIPTLLDALADPSCYTPE-CLDSLGATTFVAEVDAPSLALMVPILKRGLAERSTSIK  389 (569)
T ss_pred             HHHHHHHHHHHhhccHH-H--HHHHHHHHHHhcCcccchHH-HHHhhcceeeeeeecchhHHHHHHHHHHHHhhccchhh
Confidence            99999999987644433 1  23478899988877544433 333332221    1223344444777777877788888


Q ss_pred             HHHHHHHHHhhCCCCchhHHh--hcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhccC
Q 044999          316 AAAADVLWDLAGYKHSVPVIR--NSGAIPILVNLLRGENDEVREKVSGAIAQLSYNEADRVALADAGAVPIMIELLHD  391 (461)
Q Consensus       316 ~~a~~~L~~l~~~~~~~~~l~--~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~  391 (461)
                      +.++.++.|++.--+....+.  -...+|.|-..+.+..|++|..+.++|+.+-+..+.+..   .+.+|.+.+.+++
T Consensus       390 r~t~~IidNm~~LveDp~~lapfl~~Llp~lk~~~~d~~PEvR~vaarAL~~l~e~~g~~~f---~d~~p~l~e~~~~  464 (569)
T KOG1242|consen  390 RKTAIIIDNMCKLVEDPKDLAPFLPSLLPGLKENLDDAVPEVRAVAARALGALLERLGEVSF---DDLIPELSETLTS  464 (569)
T ss_pred             hhHHHHHHHHHHhhcCHHHHhhhHHHHhhHHHHHhcCCChhHHHHHHHHHHHHHHHHHhhcc---cccccHHHHhhcc
Confidence            999999999996533333332  223566677777778899999999999888763332222   4456666666643

>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]

Probab=98.87  E-value=1.4e-06  Score=83.57  Aligned_cols=384  Identities=12%  Similarity=0.068  Sum_probs=229.9

Q ss_pred             HHHhHHHHHHHhhcCCHHHHHHHHHHHHhhc---CCCchhHHHhhHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHhc
Q 044999            8 WEEAFNRFEQAVVSGSEALQVKALTKLARVS---KFAPQDILAATIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQ   84 (461)
Q Consensus         8 ~~~~~~~l~~ll~~~~~~~~~~a~~~l~~la---~~~~~~~l~~~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~   84 (461)
                      ....++.+-+.+.++...+|..++.+++.++   .+-.-.++-.++.+|-+-++.+   ...   ....-+.++..|+-.
T Consensus       551 l~~lv~ii~~gl~De~qkVR~itAlalsalaeaa~Pygie~fDsVlkpLwkgir~h---rgk---~laafLkAigylipl  624 (1172)
T KOG0213|consen  551 LKPLVKIIEHGLKDEQQKVRTITALALSALAEAATPYGIEQFDSVLKPLWKGIRQH---RGK---ELAAFLKAIGYLIPL  624 (1172)
T ss_pred             hHHHHHHHHHhhcccchhhhhHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHc---cCh---HHHHHHHHHhhcccc
Confidence            3445666777777888999999999999999   3333444444777776666540   111   222233344444432


Q ss_pred             CCchhHHHHHhcCCHHHHHhcCCCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhcCCChHHHHHHH----
Q 044999           85 ADGALATEIGQSGVINSVLRLFPQSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLNSCNDGTRRYLL----  160 (461)
Q Consensus        85 ~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~----  160 (461)
                      .+. -....+...++-.+.+-..++|.+.++...+.+...+..+ ...........++-++...-     .++.|.    
T Consensus       625 md~-eya~yyTrevmlil~rEf~sPDeemkkivLKVv~qcc~t~-Gv~~~y~r~dilp~ff~~fw-----~rrmA~drr~  697 (1172)
T KOG0213|consen  625 MDA-EYASYYTREVMLILIREFGSPDEEMKKIVLKVVKQCCATD-GVEPAYIRFDILPEFFFSFW-----GRRMALDRRN  697 (1172)
T ss_pred             ccH-HHHHHhHHHHHHHHHHhhCCChHHHHHHHHHHHHHHhccc-CCCHHHHhhhhhHHHHhhhh-----hhhhhccccc
Confidence            122 2223334445667778888999998888888877766433 33444555555665555321     111111    


Q ss_pred             -HHHHHhhCChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCchh--HHHHHhcCChHHHHHhcccCC--H
Q 044999          161 -EILSALALLREVRRVLICLGGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRA--RRLLVELGVIPGLVELFHIGD--W  235 (461)
Q Consensus       161 -~~L~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~--~~~~~~~~~i~~L~~ll~~~~--~  235 (461)
                       +.+...+  .+...++.....+..++.=+.++++..|...+.++.++...-..  -..-.+...+..++-.++.++  .
T Consensus       698 ykqlv~tt--v~ia~KvG~~~~v~R~v~~lkde~e~yrkm~~etv~ri~~~lg~~diderleE~lidgil~Afqeqtt~d  775 (1172)
T KOG0213|consen  698 YKQLVDTT--VEIAAKVGSDPIVSRVVLDLKDEPEQYRKMVAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQTTED  775 (1172)
T ss_pred             hhhHHHHH--HHHHHHhCchHHHHHHhhhhccccHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhcccch
Confidence             0110000  11122222333566667777788888888888777665433221  111122234555555565332  2


Q ss_pred             HHHHHHHHHHHHHhcC--ccchhhhhhcCCHHHHHHHhCCCChhHHHHHHHHHHHhccCcccH---HHHH---HHHHHHh
Q 044999          236 TTKLVAGNTLGVVAAH--VEYITPVAEAGAIPLYAELLQGPDSTGKEISEDVFCILAVSEANA---NAIA---EHLVRIL  307 (461)
Q Consensus       236 ~~~~~a~~~L~~l~~~--~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~---~~i~---~~l~~ll  307 (461)
                      .+......++.+--..  ...-.     .++..++..|++.++.+|..|+..+..++..-..+   +.+.   -.|...|
T Consensus       776 ~vml~gfg~V~~~lg~r~kpylp-----qi~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGvvLyEyl  850 (1172)
T KOG0213|consen  776 SVMLLGFGTVVNALGGRVKPYLP-----QICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVVLYEYL  850 (1172)
T ss_pred             hhhhhhHHHHHHHHhhccccchH-----HHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHHHHhc
Confidence            3333444444432211  22222     33677888899999999999999999886443333   2222   7777888


Q ss_pred             ccCCHHHHHHHHHHHHHhhCCCC-chhHHhhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcC-Chh---hHHHHHhCCCh
Q 044999          308 REGDNEANAAAADVLWDLAGYKH-SVPVIRNSGAIPILVNLLRGENDEVREKVSGAIAQLSY-NEA---DRVALADAGAV  382 (461)
Q Consensus       308 ~~~~~~~~~~a~~~L~~l~~~~~-~~~~l~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~-~~~---~~~~~~~~~~i  382 (461)
                      ....|++.-..++++..++.... .+..---.+.+|.|..+|++.+..+++..+..++.++. .++   .|+.+.-   -
T Consensus       851 geeypEvLgsILgAikaI~nvigm~km~pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRI---c  927 (1172)
T KOG0213|consen  851 GEEYPEVLGSILGAIKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRI---C  927 (1172)
T ss_pred             CcccHHHHHHHHHHHHHHHHhccccccCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHH---H
Confidence            88899988777777766663211 11111124789999999999999999999999999998 544   3444432   3


Q ss_pred             HHHHHhccCCCHHHHHHHHHHHHHhcCCCcch
Q 044999          383 PIMIELLHDESEELRDNAAESLINFSEDPLQH  414 (461)
Q Consensus       383 ~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~  414 (461)
                      -.|+++|.+.+.++|.+|...+.-++..=...
T Consensus       928 feLlelLkahkK~iRRaa~nTfG~IakaIGPq  959 (1172)
T KOG0213|consen  928 FELLELLKAHKKEIRRAAVNTFGYIAKAIGPQ  959 (1172)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhHHHHhcCHH
Confidence            45778888889999999999888887654433

>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.84  E-value=9.8e-06  Score=77.77  Aligned_cols=406  Identities=14%  Similarity=0.082  Sum_probs=224.5

Q ss_pred             CCCCCcHHHhHHHHHHHhhcCCHHHHHHHHHHHHhhcCCCchhHHHhhHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHH
Q 044999            2 GNPDTNWEEAFNRFEQAVVSGSEALQVKALTKLARVSKFAPQDILAATIPILARLLGENNFSGNLTRSIQQAAAYCLKQI   81 (461)
Q Consensus         2 ~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~la~~~~~~~l~~~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l   81 (461)
                      ++||-.. +.-+.++.++++.-+.+|..|...+..+. ....+.++-++|.|.+-|..      +||.+|..|+..+|.|
T Consensus       137 vTpdLAR-DLa~Dv~tLL~sskpYvRKkAIl~lykvF-LkYPeAlr~~FprL~EkLeD------pDp~V~SAAV~VICEL  208 (877)
T KOG1059|consen  137 VTPDLAR-DLADDVFTLLNSSKPYVRKKAILLLYKVF-LKYPEALRPCFPRLVEKLED------PDPSVVSAAVSVICEL  208 (877)
T ss_pred             cCchhhH-HHHHHHHHHHhcCchHHHHHHHHHHHHHH-HhhhHhHhhhHHHHHHhccC------CCchHHHHHHHHHHHH
Confidence            3455333 23367888999999999999999988887 11123344588999988864      7889999999999999


Q ss_pred             HhcCCchhHHHHHhcCCHHHHHhcCCCCC-HHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhcCCCh-HHHHHH
Q 044999           82 ASQADGALATEIGQSGVINSVLRLFPQSD-DSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLNSCND-GTRRYL  159 (461)
Q Consensus        82 ~~~~~~~~~~~~~~~~~l~~L~~ll~~~~-~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~-~~~~~a  159 (461)
                      +.. ++.+.-.     .-|.+.++|.+.+ .=+.....+.+..|+.-.|.....+     ++.+.+++.+... .+...+
T Consensus       209 ArK-nPknyL~-----LAP~ffkllttSsNNWmLIKiiKLF~aLtplEPRLgKKL-----ieplt~li~sT~AmSLlYEC  277 (877)
T KOG1059|consen  209 ARK-NPQNYLQ-----LAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRLGKKL-----IEPITELMESTVAMSLLYEC  277 (877)
T ss_pred             Hhh-CCccccc-----ccHHHHHHHhccCCCeehHHHHHHHhhccccCchhhhhh-----hhHHHHHHHhhHHHHHHHHH
Confidence            987 4433222     2466777776432 2235556666667776555444443     5567777766543 333334


Q ss_pred             HHHHHH--hh-CChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCchh-HHHHHhcCChHHHHHhcccCCH
Q 044999          160 LEILSA--LA-LLREVRRVLICLGGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRA-RRLLVELGVIPGLVELFHIGDW  235 (461)
Q Consensus       160 ~~~L~~--l~-~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~-~~~~~~~~~i~~L~~ll~~~~~  235 (461)
                      +.++..  ++ ..+++-..+.  -+++.|-.++.+.|+.+++.++-+++.+...++. ...     .-+.++.+|.+.++
T Consensus       278 vNTVVa~s~s~g~~d~~asiq--LCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vqa-----~kdlIlrcL~DkD~  350 (877)
T KOG1059|consen  278 VNTVVAVSMSSGMSDHSASIQ--LCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQA-----HKDLILRCLDDKDE  350 (877)
T ss_pred             HHHheeehhccCCCCcHHHHH--HHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHHH-----hHHHHHHHhccCCc
Confidence            333322  22 2222211111  1577788888999999999999999999877665 221     24678889999999


Q ss_pred             HHHHHHHHHHHHHhcCccchhhhhhcCCHHHHHHHhCCC-ChhHHHHHHHHHHHhccCcccHHHHH------HHHHHHhc
Q 044999          236 TTKLVAGNTLGVVAAHVEYITPVAEAGAIPLYAELLQGP-DSTGKEISEDVFCILAVSEANANAIA------EHLVRILR  308 (461)
Q Consensus       236 ~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~ll~~~-~~~~~~~a~~~L~~l~~~~~~~~~i~------~~l~~ll~  308 (461)
                      .++..|+..|..+...... ..+     +..|..-+... ....+...+.-+..++..... ..+.      ..++++.+
T Consensus       351 SIRlrALdLl~gmVskkNl-~eI-----Vk~LM~~~~~ae~t~yrdell~~II~iCS~snY-~~ItdFEWYlsVlveLa~  423 (877)
T KOG1059|consen  351 SIRLRALDLLYGMVSKKNL-MEI-----VKTLMKHVEKAEGTNYRDELLTRIISICSQSNY-QYITDFEWYLSVLVELAR  423 (877)
T ss_pred             hhHHHHHHHHHHHhhhhhH-HHH-----HHHHHHHHHhccchhHHHHHHHHHHHHhhhhhh-hhhhhHHHHHHHHHHHHh
Confidence            9999999998887654322 222     44555444333 223443333322222221111 1111      34444433


Q ss_pred             cCCHHHHHHHHHHHHHhh-CCCCchhHHhhcCCHHHHHHhhcC-----------CCHHHHHHHHHHHHHhcCChhhHHHH
Q 044999          309 EGDNEANAAAADVLWDLA-GYKHSVPVIRNSGAIPILVNLLRG-----------ENDEVREKVSGAIAQLSYNEADRVAL  376 (461)
Q Consensus       309 ~~~~~~~~~a~~~L~~l~-~~~~~~~~l~~~g~i~~L~~ll~~-----------~~~~v~~~a~~~L~~l~~~~~~~~~~  376 (461)
                      -...+.-......+.+++ +.+..++..+.     ....++.+           .-.+|..+|+|+++-.+..-++....
T Consensus       424 l~~~~~G~~I~eQi~Dv~iRV~~iR~fsV~-----~m~~Ll~~~~~~~s~q~n~~l~eVL~AaaWi~GEyse~ven~~~~  498 (877)
T KOG1059|consen  424 LEGTRHGSLIAEQIIDVAIRVPSIRPFSVS-----QMSALLDDPLLAGSAQINSQLCEVLYAAAWILGEYSEFVENPNDT  498 (877)
T ss_pred             ccccchhhHHHHHHHHHheechhhhHhHHH-----HHHHHHhchhhccchhhccchhHHHHHHHHHHHHHHHHhhCHHHH
Confidence            222222222333344444 23333333322     12222221           12567788889998887633333222


Q ss_pred             HhCCChHHHHHh----ccCC-CHHHHHHHHHHHHHhcCCCcchHHHHHhhCCchH-HhHHHHHHHhhhchhHHHHHHHHH
Q 044999          377 ADAGAVPIMIEL----LHDE-SEELRDNAAESLINFSEDPLQHERISEAIGIPSF-QSMQSRLTRIRASDDLMARSMRRM  450 (461)
Q Consensus       377 ~~~~~i~~L~~l----l~~~-~~~~~~~a~~~L~~l~~~~~~~~~l~~~~~~~~~-~~l~~~l~~~~~~~~~~~~~~~~~  450 (461)
                           +..+.+-    +... ..-..+++....++++...+.-.   +..|+-.+ ..++..+.++.-+.+..+++.|.-
T Consensus       499 -----leamlrpr~~~lp~~iq~vyvqni~Klfc~~~~~~ee~~---~~e~~~sL~~~i~~~l~qf~~s~d~EvQERA~~  570 (877)
T KOG1059|consen  499 -----LEAMLRPRSDLLPGHIQAVYVQNIVKLFCSWCSQFEETK---DFEGIVSLVNLILSFLEQFSGSSDLEVQERASE  570 (877)
T ss_pred             -----HHHHhcCccccCchHHHHHHHHHHHHHHHHHHhhcCccc---chhHHHHHHHHHHHHhhcccCccchhHHHHHHH
Confidence                 2222221    1111 12234556666777765544322   12233333 335555566666677778877655


Q ss_pred             hHh
Q 044999          451 SIE  453 (461)
Q Consensus       451 ~~~  453 (461)
                      +..
T Consensus       571 ~~~  573 (877)
T KOG1059|consen  571 VLE  573 (877)
T ss_pred             HHH
Confidence            444

>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.84  E-value=7.5e-07  Score=86.19  Aligned_cols=370  Identities=16%  Similarity=0.146  Sum_probs=219.8

Q ss_pred             CCCCCcHHHhHHHHHHHhhcCCHHHHHHHHHHHHhhcCCCchhHHHhhHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHH
Q 044999            2 GNPDTNWEEAFNRFEQAVVSGSEALQVKALTKLARVSKFAPQDILAATIPILARLLGENNFSGNLTRSIQQAAAYCLKQI   81 (461)
Q Consensus         2 ~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~la~~~~~~~l~~~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l   81 (461)
                      +.|+ .-..+++.+.+-..++++.+|..|.+..+.+-   ...........+.+.++.      +++-+++.++.+...+
T Consensus        79 ~~P~-~a~~avnt~~kD~~d~np~iR~lAlrtm~~l~---v~~i~ey~~~Pl~~~l~d------~~~yvRktaa~~vakl  148 (734)
T KOG1061|consen   79 GKPD-LAILAVNTFLKDCEDPNPLIRALALRTMGCLR---VDKITEYLCDPLLKCLKD------DDPYVRKTAAVCVAKL  148 (734)
T ss_pred             cCch-HHHhhhhhhhccCCCCCHHHHHHHhhceeeEe---ehHHHHHHHHHHHHhccC------CChhHHHHHHHHHHHh
Confidence            4454 34456677777777888888888877777665   111222278888899986      5677888888888887


Q ss_pred             HhcCCchhHHHHHhcCCHHHHHhcCCCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhcCCChHHHHHHHH
Q 044999           82 ASQADGALATEIGQSGVINSVLRLFPQSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLNSCNDGTRRYLLE  161 (461)
Q Consensus        82 ~~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~  161 (461)
                      -..    ..+...+.|.++.|..++.+.++.|...|..++..+...++...........+..++..+...++--+...+.
T Consensus       149 ~~~----~~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~~~l~~~~~~~lL~al~ec~EW~qi~IL~  224 (734)
T KOG1061|consen  149 FDI----DPDLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHPSVNLLELNPQLINKLLEALNECTEWGQIFILD  224 (734)
T ss_pred             hcC----ChhhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHHHHhhhhhHHHHHH
Confidence            764    2345668899999999999999999999999999887655432111222223444555555544444444444


Q ss_pred             HHHHhh-CChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhcccCCHHHHHH
Q 044999          162 ILSALA-LLREVRRVLICLGGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRARRLLVELGVIPGLVELFHIGDWTTKLV  240 (461)
Q Consensus       162 ~L~~l~-~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~  240 (461)
                      .+.+-. .++.....     .+..+...+.+.+..+...+...+.++...........-....+.++.++.+.. +.+..
T Consensus       225 ~l~~y~p~d~~ea~~-----i~~r~~p~Lqh~n~avvlsavKv~l~~~~~~~~~~~~~~~K~~~pl~tlls~~~-e~qyv  298 (734)
T KOG1061|consen  225 CLAEYVPKDSREAED-----ICERLTPRLQHANSAVVLSAVKVILQLVKYLKQVNELLFKKVAPPLVTLLSSES-EIQYV  298 (734)
T ss_pred             HHHhcCCCCchhHHH-----HHHHhhhhhccCCcceEeehHHHHHHHHHHHHHHHHHHHHHhcccceeeecccc-hhhHH
Confidence            444444 22212222     466778888888888888888888888766665333333446778888888776 66666


Q ss_pred             HHHHHHHHhcCccchhhhhhcCCHHHHHHH--hCCCCh-hHHHHHHHHHHHhccCcccHHHHHHHHHHHhccCCHHHHHH
Q 044999          241 AGNTLGVVAAHVEYITPVAEAGAIPLYAEL--LQGPDS-TGKEISEDVFCILAVSEANANAIAEHLVRILREGDNEANAA  317 (461)
Q Consensus       241 a~~~L~~l~~~~~~~~~~~~~g~i~~L~~l--l~~~~~-~~~~~a~~~L~~l~~~~~~~~~i~~~l~~ll~~~~~~~~~~  317 (461)
                      ++.-+.-+-..   +..+     ...-+..  .+..+| .++..=+.++..++... +-.++...+...-...+.+....
T Consensus       299 aLrNi~lil~~---~p~~-----~~~~~~~Ff~kynDPiYvK~eKleil~~la~~~-nl~qvl~El~eYatevD~~fvrk  369 (734)
T KOG1061|consen  299 ALRNINLILQK---RPEI-----LKVEIKVFFCKYNDPIYVKLEKLEILIELANDA-NLAQVLAELKEYATEVDVDFVRK  369 (734)
T ss_pred             HHhhHHHHHHh---ChHH-----HHhHhHeeeeecCCchhhHHHHHHHHHHHhhHh-HHHHHHHHHHHhhhhhCHHHHHH
Confidence            43333322221   1111     1111111  122232 34444445555554332 22223344444445557788888


Q ss_pred             HHHHHHHhhCCCCchhHHhhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcC-ChhhHHHHHhCCChHHHHHhccC-CCHH
Q 044999          318 AADVLWDLAGYKHSVPVIRNSGAIPILVNLLRGENDEVREKVSGAIAQLSY-NEADRVALADAGAVPIMIELLHD-ESEE  395 (461)
Q Consensus       318 a~~~L~~l~~~~~~~~~l~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~-~~~~~~~~~~~~~i~~L~~ll~~-~~~~  395 (461)
                      +++++++++.--+..     .+.+..|++++..+-..+...+...+..+-+ .|..-+.+     ++.+..-+.+ .+|+
T Consensus       370 aIraig~~aik~e~~-----~~cv~~lLell~~~~~yvvqE~~vvi~dilRkyP~~~~~v-----v~~l~~~~~sl~epe  439 (734)
T KOG1061|consen  370 AVRAIGRLAIKAEQS-----NDCVSILLELLETKVDYVVQEAIVVIRDILRKYPNKYESV-----VAILCENLDSLQEPE  439 (734)
T ss_pred             HHHHhhhhhhhhhhh-----hhhHHHHHHHHhhcccceeeehhHHHHhhhhcCCCchhhh-----hhhhcccccccCChH
Confidence            888998888532221     5678888888887666666666677777776 55533222     2223333322 4566


Q ss_pred             HHHHHHHHHHHhcCC
Q 044999          396 LRDNAAESLINFSED  410 (461)
Q Consensus       396 ~~~~a~~~L~~l~~~  410 (461)
                      .+..-.|.+..-+..
T Consensus       440 ak~amiWilg~y~~~  454 (734)
T KOG1061|consen  440 AKAALIWILGEYAER  454 (734)
T ss_pred             HHHHHHHHHhhhhhc
Confidence            666666655554433

>PF05536 Neurochondrin: Neurochondrin

Probab=98.80  E-value=1.7e-05  Score=77.73  Aligned_cols=401  Identities=12%  Similarity=0.118  Sum_probs=235.8

Q ss_pred             hHHHHHHhhccCCCCCCCcHHHHHH-HHHHHHHHHhcCCc--hhHHHHHhcCCHHHHHhcCCCC-------CHHHHHHHH
Q 044999           49 TIPILARLLGENNFSGNLTRSIQQA-AAYCLKQIASQADG--ALATEIGQSGVINSVLRLFPQS-------DDSFRTVLV  118 (461)
Q Consensus        49 ~i~~l~~~l~~~~~~~~~~~~~~~~-a~~~L~~l~~~~~~--~~~~~~~~~~~l~~L~~ll~~~-------~~~~~~~~~  118 (461)
                      .+...+++|+.    ..|   .++- +...+.++...++.  ..++.+++.=+.+.+-++|+++       ....+..+.
T Consensus         6 ~l~~c~~lL~~----~~D---~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~Lav   78 (543)
T PF05536_consen    6 SLEKCLSLLKS----ADD---TERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAV   78 (543)
T ss_pred             HHHHHHHHhcc----CCc---HHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHH
Confidence            57788899986    433   6666 66777777774232  2344577776778888998873       234455556


Q ss_pred             HHHHHHhccChhhHHHHHHcCCHHHHHHHhcCCCh-HHHHHHHHHHHHhhCChHHHHHHHhcCCHHHHHHHHcCCCHHHH
Q 044999          119 KCLRVFVTFGNENRVIVARNGGLEIVIDLLNSCND-GTRRYLLEILSALALLREVRRVLICLGGLRYLVEAVSFGSMVSR  197 (461)
Q Consensus       119 ~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~-~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~  197 (461)
                      ..+..++. +++....-.-.+-+|.|++.+.+.+. .+...++.+|..++.+++.++.+++.|+++.|++.+.+ .+...
T Consensus        79 svL~~f~~-~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei~~~-~~~~~  156 (543)
T PF05536_consen   79 SVLAAFCR-DPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGAVPALCEIIPN-QSFQM  156 (543)
T ss_pred             HHHHHHcC-ChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHHHHh-CcchH
Confidence            55667775 44544222233459999999987777 89999999999999999999999999999999999987 55668


Q ss_pred             HHHHHHHHHhhcCchhHHHHHh----cCChHHHHHhcccCCHHHHHHHHHHHHHHhcCccc--hhhhhhcC----CHHHH
Q 044999          198 ERACQAIGLLAVTGRARRLLVE----LGVIPGLVELFHIGDWTTKLVAGNTLGVVAAHVEY--ITPVAEAG----AIPLY  267 (461)
Q Consensus       198 ~~a~~~L~~l~~~~~~~~~~~~----~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~--~~~~~~~g----~i~~L  267 (461)
                      ..++.++.++.........--.    ...++.+-..+.......+-..+..|..+-...+.  ........    +...+
T Consensus       157 E~Al~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl  236 (543)
T PF05536_consen  157 EIALNLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGL  236 (543)
T ss_pred             HHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHH
Confidence            8888888888765442110011    12345555555555555666677777777655321  11122222    33445


Q ss_pred             HHHhCCC-ChhHHHHHHHHHHHhcc--------Cccc--HHHH----H-----------HHHHHHhccCC-HH-------
Q 044999          268 AELLQGP-DSTGKEISEDVFCILAV--------SEAN--ANAI----A-----------EHLVRILREGD-NE-------  313 (461)
Q Consensus       268 ~~ll~~~-~~~~~~~a~~~L~~l~~--------~~~~--~~~i----~-----------~~l~~ll~~~~-~~-------  313 (461)
                      ..++++. .+.-|..++.....|..        .+..  ...+    +           +.++...+.+. +.       
T Consensus       237 ~~iL~sr~~~~~R~~al~Laa~Ll~~~G~~wl~~~~~~~~~~F~~Llv~l~~VEir~~L~~L~~~~~~~~~~~~~~~L~~  316 (543)
T PF05536_consen  237 RDILQSRLTPSQRDPALNLAASLLDLLGPEWLFADDKKSGKKFLLLLVNLACVEIRMSLEELLEQLNPEEYPEKQRLLAS  316 (543)
T ss_pred             HHHHhcCCCHHHHHHHHHHHHHHHHHhChHhhcCCCCCCcccHHHHHHHHHHHHHHHHhHHhhhcCCchhhHHHHHHHHH
Confidence            6666665 56666666655555421        1111  0111    1           22222222221 11       


Q ss_pred             ---HHHHHHHHHHHhhCCC------CchhHHh--hcCCHHHHHHhhcCC------CHHHHHHHHHHHHHhcC-Chh-hHH
Q 044999          314 ---ANAAAADVLWDLAGYK------HSVPVIR--NSGAIPILVNLLRGE------NDEVREKVSGAIAQLSY-NEA-DRV  374 (461)
Q Consensus       314 ---~~~~a~~~L~~l~~~~------~~~~~l~--~~g~i~~L~~ll~~~------~~~v~~~a~~~L~~l~~-~~~-~~~  374 (461)
                         +.+..+..+.+-...+      +....+.  -.+.+...+++|++-      ++.....+.++|+..-. ++. .++
T Consensus       317 cf~ilE~~I~~l~~~~~~~~~~~~~~~l~kl~~~l~e~~~~vle~L~~~~d~~~~d~~~vlAsvR~L~~WLaEe~~~lr~  396 (543)
T PF05536_consen  317 CFSILEHFIGYLVRSLEEESLDLDPDTLLKLRTSLSETFSAVLEYLRDVWDESQKDPDFVLASVRVLGAWLAEETSALRK  396 (543)
T ss_pred             HHHHHHHHHHHHHhccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHhChHHHHH
Confidence               2223333333322111      1111111  123456666777532      22355567777776555 443 455


Q ss_pred             HHHhCCChHHHHHhccCC----------CHHHHHHHHHHHHHhcCCCcchHHHHHhhCCchHHhHHHHHHHhhhc-h---
Q 044999          375 ALADAGAVPIMIELLHDE----------SEELRDNAAESLINFSEDPLQHERISEAIGIPSFQSMQSRLTRIRAS-D---  440 (461)
Q Consensus       375 ~~~~~~~i~~L~~ll~~~----------~~~~~~~a~~~L~~l~~~~~~~~~l~~~~~~~~~~~l~~~l~~~~~~-~---  440 (461)
                      .+.  |.+|.++++.+..          ..+.+....-+|..++..+++++.+...+|-..+..-+-...+.... .   
T Consensus       397 ~v~--~Ll~~ll~~~~~~~~~~~~~~~~~~d~~r~lLPaL~~lt~e~~gr~~l~~~~g~~~l~~~l~~~~~~~~~~~~~~  474 (543)
T PF05536_consen  397 EVY--GLLPFLLSLYRESFQEAEPAREGPLDFLRFLLPALCHLTAEEEGRKILLSNGGWKLLCDDLLKILQSPSGDDDAE  474 (543)
T ss_pred             HHH--HHHHHHHHHHhhhhhhcccccccchhHHHHHHHHHhhhhccHHHHHHHHhCCcHHHHHHHHHHHHHhcccCcchh
Confidence            553  6799999998542          23577888899999999999999999887765554322212111111 0   


Q ss_pred             ---hHHHHHHHHHhHhhhccCCC
Q 044999          441 ---DLMARSMRRMSIEQLTWDPD  460 (461)
Q Consensus       441 ---~~~~~~~~~~~~~~~~~~p~  460 (461)
                         +..+..+..+.+.-++-+|+
T Consensus       475 ~~~~~~l~~~c~illNl~~~e~~  497 (543)
T PF05536_consen  475 DSAEMALVTACGILLNLVVTEPK  497 (543)
T ss_pred             hhhHHHHHHHHHHHHHHHhcccc
Confidence               11345556666666666665

>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term

Probab=98.78  E-value=9.9e-06  Score=75.15  Aligned_cols=245  Identities=20%  Similarity=0.111  Sum_probs=175.9

Q ss_pred             HHHHhccChhhHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHhhCChHHHHHHHhcCCHHHHHHHHcCC--CHHHHH
Q 044999          121 LRVFVTFGNENRVIVARNGGLEIVIDLLNSCNDGTRRYLLEILSALALLREVRRVLICLGGLRYLVEAVSFG--SMVSRE  198 (461)
Q Consensus       121 l~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~~l~~~--~~~~~~  198 (461)
                      +..+....+..+..+.-....+.+..++-+++..+|..+.+++..+..+++.-..+.+.+.-.-++.-|..+  +..-|.
T Consensus         7 Lv~l~~~~p~l~~~~~~~~~~~~i~~~lL~~~~~vraa~yRilRy~i~d~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~   86 (371)
T PF14664_consen    7 LVDLLKRHPTLKYDLVLSFFGERIQCMLLSDSKEVRAAGYRILRYLISDEESLQILLKLHIDIFIIRSLDRDNKNDVERE   86 (371)
T ss_pred             HHHHHHhCchhhhhhhHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHcCHHHHHHHHHcCCchhhHhhhcccCCChHHHH
Confidence            334444555555555544456666654444449999999999999999999999998887666666666654  556789


Q ss_pred             HHHHHHHHhhcCchhHHHHHhcCChHHHHHhcccCCHHHHHHHHHHHHHHhcCccchhhhhhcCCHHHHHHHhCCCChhH
Q 044999          199 RACQAIGLLAVTGRARRLLVELGVIPGLVELFHIGDWTTKLVAGNTLGVVAAHVEYITPVAEAGAIPLYAELLQGPDSTG  278 (461)
Q Consensus       199 ~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~  278 (461)
                      +|++.++.+....+.... ...|++..++.+..+.++..+..++.+|+.++..  +-..+.+.|++..+.+.+.++..++
T Consensus        87 QALkliR~~l~~~~~~~~-~~~~vvralvaiae~~~D~lr~~cletL~El~l~--~P~lv~~~gG~~~L~~~l~d~~~~~  163 (371)
T PF14664_consen   87 QALKLIRAFLEIKKGPKE-IPRGVVRALVAIAEHEDDRLRRICLETLCELALL--NPELVAECGGIRVLLRALIDGSFSI  163 (371)
T ss_pred             HHHHHHHHHHHhcCCccc-CCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhh--CHHHHHHcCCHHHHHHHHHhccHhH
Confidence            999999999877554322 2456889999999999999999999999999874  4455778899999999998876678


Q ss_pred             HHHHHHHHHHhccCcccHHHHH-----HHHHHHhccC-------CH--HHHHHHHHHHHHhhCCCCchhHHhhc--CCHH
Q 044999          279 KEISEDVFCILAVSEANANAIA-----EHLVRILREG-------DN--EANAAAADVLWDLAGYKHSVPVIRNS--GAIP  342 (461)
Q Consensus       279 ~~~a~~~L~~l~~~~~~~~~i~-----~~l~~ll~~~-------~~--~~~~~a~~~L~~l~~~~~~~~~l~~~--g~i~  342 (461)
                      .+..+.++..+-..+..+..+.     +.++.-+.+.       +.  +....+..++..+-++=.+.-.+...  .++.
T Consensus       164 ~~~l~~~lL~lLd~p~tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~lk  243 (371)
T PF14664_consen  164 SESLLDTLLYLLDSPRTRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRGLK  243 (371)
T ss_pred             HHHHHHHHHHHhCCcchhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchHHH
Confidence            8889999999998888887655     3333333221       22  23445555555555442332333322  4788


Q ss_pred             HHHHhhcCCCHHHHHHHHHHHHHhcC
Q 044999          343 ILVNLLRGENDEVREKVSGAIAQLSY  368 (461)
Q Consensus       343 ~L~~ll~~~~~~v~~~a~~~L~~l~~  368 (461)
                      .|+..|..++++++......+..+-.
T Consensus       244 sLv~~L~~p~~~ir~~Ildll~dllr  269 (371)
T PF14664_consen  244 SLVDSLRLPNPEIRKAILDLLFDLLR  269 (371)
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHHC
Confidence            89999998888888888877776665

>TIGR02270 conserved hypothetical protein

Probab=98.78  E-value=7.4e-06  Score=76.90  Aligned_cols=242  Identities=14%  Similarity=0.034  Sum_probs=167.9

Q ss_pred             hHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHhcCCCCCHHHHHHHHHHHHHHhccC
Q 044999           49 TIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQADGALATEIGQSGVINSVLRLFPQSDDSFRTVLVKCLRVFVTFG  128 (461)
Q Consensus        49 ~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~l~~~~  128 (461)
                      .++.++..|..    + +++.+...++.++.....   .         ..+..+++.|.+.++.++..++..|..+-.. 
T Consensus        55 a~~~L~~aL~~----d-~~~ev~~~aa~al~~~~~---~---------~~~~~L~~~L~d~~~~vr~aaa~ALg~i~~~-  116 (410)
T TIGR02270        55 ATELLVSALAE----A-DEPGRVACAALALLAQED---A---------LDLRSVLAVLQAGPEGLCAGIQAALGWLGGR-  116 (410)
T ss_pred             HHHHHHHHHhh----C-CChhHHHHHHHHHhccCC---h---------HHHHHHHHHhcCCCHHHHHHHHHHHhcCCch-
Confidence            67888888863    2 334454444433321111   1         1378899999999999899988888754422 


Q ss_pred             hhhHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHhhCChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhh
Q 044999          129 NENRVIVARNGGLEIVIDLLNSCNDGTRRYLLEILSALALLREVRRVLICLGGLRYLVEAVSFGSMVSRERACQAIGLLA  208 (461)
Q Consensus       129 ~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~  208 (461)
                                +..+.|+.++++.++.++..++.++...           .....+.+..+|++.++.++..|+++++.+-
T Consensus       117 ----------~a~~~L~~~L~~~~p~vR~aal~al~~r-----------~~~~~~~L~~~L~d~d~~Vra~A~raLG~l~  175 (410)
T TIGR02270       117 ----------QAEPWLEPLLAASEPPGRAIGLAALGAH-----------RHDPGPALEAALTHEDALVRAAALRALGELP  175 (410)
T ss_pred             ----------HHHHHHHHHhcCCChHHHHHHHHHHHhh-----------ccChHHHHHHHhcCCCHHHHHHHHHHHHhhc
Confidence                      2467789999999999998888777652           2234667888999999999999999999984


Q ss_pred             cCchhHHHHHhcCChHHHHHhcccCCHHHHHHHHHHHHHHhcCccchhhhhhcCCHHHHHHHhCCCChhHHHHHHHHHHH
Q 044999          209 VTGRARRLLVELGVIPGLVELFHIGDWTTKLVAGNTLGVVAAHVEYITPVAEAGAIPLYAELLQGPDSTGKEISEDVFCI  288 (461)
Q Consensus       209 ~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~  288 (461)
                      .          ...++.|...+.+.++.++..|+.++..+..          ...+..+..+...........+..++..
T Consensus       176 ~----------~~a~~~L~~al~d~~~~VR~aA~~al~~lG~----------~~A~~~l~~~~~~~g~~~~~~l~~~lal  235 (410)
T TIGR02270       176 R----------RLSESTLRLYLRDSDPEVRFAALEAGLLAGS----------RLAWGVCRRFQVLEGGPHRQRLLVLLAV  235 (410)
T ss_pred             c----------ccchHHHHHHHcCCCHHHHHHHHHHHHHcCC----------HhHHHHHHHHHhccCccHHHHHHHHHHh
Confidence            3          4467778888999999999999999866633          1224455554444444444444444433


Q ss_pred             hccCcccHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCchhHHhhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcC
Q 044999          289 LAVSEANANAIAEHLVRILREGDNEANAAAADVLWDLAGYKHSVPVIRNSGAIPILVNLLRGENDEVREKVSGAIAQLSY  368 (461)
Q Consensus       289 l~~~~~~~~~i~~~l~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~  368 (461)
                      . ..+    ...+.|..+++...  ++..++.+++.+-          ....++.|+..+.+..  ++..|..++..++-
T Consensus       236 ~-~~~----~a~~~L~~ll~d~~--vr~~a~~AlG~lg----------~p~av~~L~~~l~d~~--~aR~A~eA~~~ItG  296 (410)
T TIGR02270       236 A-GGP----DAQAWLRELLQAAA--TRREALRAVGLVG----------DVEAAPWCLEAMREPP--WARLAGEAFSLITG  296 (410)
T ss_pred             C-Cch----hHHHHHHHHhcChh--hHHHHHHHHHHcC----------CcchHHHHHHHhcCcH--HHHHHHHHHHHhhC
Confidence            3 111    34466777776644  8889999998773          3467888998888643  88899999999887

Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.

>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]

Probab=98.78  E-value=4.9e-06  Score=82.05  Aligned_cols=380  Identities=15%  Similarity=0.151  Sum_probs=209.6

Q ss_pred             HHHhHHHHHHHhhc--CCHHHHHHHHHHHHhhc---CCCchhHHHhhHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHH
Q 044999            8 WEEAFNRFEQAVVS--GSEALQVKALTKLARVS---KFAPQDILAATIPILARLLGENNFSGNLTRSIQQAAAYCLKQIA   82 (461)
Q Consensus         8 ~~~~~~~l~~ll~~--~~~~~~~~a~~~l~~la---~~~~~~~l~~~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~   82 (461)
                      ..+-+....+.+.+  .|.+||..|+.+.+.+-   .+..+..+..+++.+++-|+.    +-    ....|+.++..++
T Consensus       566 v~~m~~~tl~rL~a~d~DqeVkeraIscmgq~i~~fgD~l~~eL~~~L~il~eRl~n----Ei----TRl~AvkAlt~Ia  637 (1233)
T KOG1824|consen  566 VKTMYDCTLQRLKATDSDQEVKERAISCMGQIIANFGDFLGNELPRTLPILLERLGN----EI----TRLTAVKALTLIA  637 (1233)
T ss_pred             HHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhc----hh----HHHHHHHHHHHHH
Confidence            44445555566664  57899999999998887   344444555599999999975    21    3444899999999


Q ss_pred             hcCCchhHHHHHhcCCHHHHHhcCCCCCHHHHHHHHHHHHHHhccCh-hhHHHHHHcCCHHHHHHHhcCCChHHHHHHHH
Q 044999           83 SQADGALATEIGQSGVINSVLRLFPQSDDSFRTVLVKCLRVFVTFGN-ENRVIVARNGGLEIVIDLLNSCNDGTRRYLLE  161 (461)
Q Consensus        83 ~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~-~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~  161 (461)
                      .. +-..-....-..+++.+...++......+.....++..+...-. .......+ -.+..+..++..++-.+...|+.
T Consensus       638 ~S-~l~i~l~~~l~~il~~l~~flrK~~r~lr~~~l~a~~~L~~~~~~~~~~~~~e-~vL~el~~Lisesdlhvt~~a~~  715 (1233)
T KOG1824|consen  638 MS-PLDIDLSPVLTEILPELASFLRKNQRALRLATLTALDKLVKNYSDSIPAELLE-AVLVELPPLISESDLHVTQLAVA  715 (1233)
T ss_pred             hc-cceeehhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHH-HHHHHhhhhhhHHHHHHHHHHHH
Confidence            84 32222122223356777777765554444444444444442110 11111111 12333445566666677788888


Q ss_pred             HHHHhhCChHHHHHHHhcCCHHHHHHHHcCCCHH--H----------------------------------------HHH
Q 044999          162 ILSALALLREVRRVLICLGGLRYLVEAVSFGSMV--S----------------------------------------RER  199 (461)
Q Consensus       162 ~L~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~--~----------------------------------------~~~  199 (461)
                      .+..+.........-+...+++.++.+++++--.  .                                        ..+
T Consensus       716 ~L~tl~~~~ps~l~~~~~~iL~~ii~ll~Spllqg~al~~~l~~f~alV~t~~~~l~y~~l~s~lt~PV~~~~~~~l~kq  795 (1233)
T KOG1824|consen  716 FLTTLAIIQPSSLLKISNPILDEIIRLLRSPLLQGGALSALLLFFQALVITKEPDLDYISLLSLLTAPVYEQVTDGLHKQ  795 (1233)
T ss_pred             HHHHHHhcccHHHHHHhhhhHHHHHHHhhCccccchHHHHHHHHHHHHHhcCCCCccHHHHHHHHcCCcccccccchhHH
Confidence            8888876555544444455677777777655210  0                                        011


Q ss_pred             HH----HHHHHhhcCchhHHHHHhcCChHHHHHhcc--cCCHHHHHHHHHHHHHHhcCccchhhhhhcCCHHHHHHHhCC
Q 044999          200 AC----QAIGLLAVTGRARRLLVELGVIPGLVELFH--IGDWTTKLVAGNTLGVVAAHVEYITPVAEAGAIPLYAELLQG  273 (461)
Q Consensus       200 a~----~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~--~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~ll~~  273 (461)
                      |.    .+...++...+.+    .......|+.-+.  ..+..++.-|.-.++.+....+   .....+.-..+++.+.+
T Consensus       796 a~~siA~cvA~Lt~~~~~~----s~s~a~kl~~~~~s~~s~~~ikvfa~LslGElgr~~~---~s~~~e~~~~iieaf~s  868 (1233)
T KOG1824|consen  796 AYYSIAKCVAALTCACPQK----SKSLATKLIQDLQSPKSSDSIKVFALLSLGELGRRKD---LSPQNELKDTIIEAFNS  868 (1233)
T ss_pred             HHHHHHHHHHHHHHhcccc----chhHHHHHHHHHhCCCCchhHHHHHHhhhhhhccCCC---CCcchhhHHHHHHHcCC
Confidence            11    1111111100000    0001222222222  2234455555556666655411   11122445578899999


Q ss_pred             CChhHHHHHHHHHHHhccCccc------HHHHH----------HHHHHHhccC-----------------------CHHH
Q 044999          274 PDSTGKEISEDVFCILAVSEAN------ANAIA----------EHLVRILREG-----------------------DNEA  314 (461)
Q Consensus       274 ~~~~~~~~a~~~L~~l~~~~~~------~~~i~----------~~l~~ll~~~-----------------------~~~~  314 (461)
                      ++.+++.+|..+|++++...-.      ..++.          ..+...+...                       .+..
T Consensus       869 p~edvksAAs~ALGsl~vgnl~~yLpfil~qi~sqpk~QyLLLhSlkevi~~~svd~~~~~v~~IW~lL~k~cE~~eegt  948 (1233)
T KOG1824|consen  869 PSEDVKSAASYALGSLAVGNLPKYLPFILEQIESQPKRQYLLLHSLKEVIVSASVDGLKPYVEKIWALLFKHCECAEEGT  948 (1233)
T ss_pred             ChHHHHHHHHHHhhhhhcCchHhHHHHHHHHHhcchHhHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHhcccchhhh
Confidence            9999999999999999763321      11111          2222222211                       1223


Q ss_pred             HHHHHHHHHHhhCCCCchhHHhhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcC-ChhhHHHHHhCCChHHHHHhccCCC
Q 044999          315 NAAAADVLWDLAGYKHSVPVIRNSGAIPILVNLLRGENDEVREKVSGAIAQLSY-NEADRVALADAGAVPIMIELLHDES  393 (461)
Q Consensus       315 ~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~-~~~~~~~~~~~~~i~~L~~ll~~~~  393 (461)
                      |...+.||+.|+..+       -...+|.|-..+.++.+..+..+..++.-... .+.--..+.+ ..+...+.++++++
T Consensus       949 R~vvAECLGkL~l~e-------pesLlpkL~~~~~S~a~~~rs~vvsavKfsisd~p~~id~~lk-~~ig~fl~~~~dpD 1020 (1233)
T KOG1824|consen  949 RNVVAECLGKLVLIE-------PESLLPKLKLLLRSEASNTRSSVVSAVKFSISDQPQPIDPLLK-QQIGDFLKLLRDPD 1020 (1233)
T ss_pred             HHHHHHHhhhHHhCC-------hHHHHHHHHHHhcCCCcchhhhhhheeeeeecCCCCccCHHHH-HHHHHHHHHHhCCc
Confidence            344444444444321       12357888888888888888877776665554 3332222222 34777888899999


Q ss_pred             HHHHHHHHHHHHHhcCCCc
Q 044999          394 EELRDNAAESLINFSEDPL  412 (461)
Q Consensus       394 ~~~~~~a~~~L~~l~~~~~  412 (461)
                      .++++.|..++...+.+..
T Consensus      1021 l~VrrvaLvv~nSaahNKp 1039 (1233)
T KOG1824|consen 1021 LEVRRVALVVLNSAAHNKP 1039 (1233)
T ss_pred             hhHHHHHHHHHHHHHccCH
Confidence            9999999999988887753

>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.76  E-value=2.6e-05  Score=74.73  Aligned_cols=375  Identities=16%  Similarity=0.185  Sum_probs=225.1

Q ss_pred             HHhhcCCHHHHHHHHHHHHhhcCCCchhHHHhhHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHhcCCchhHHHHHhc
Q 044999           17 QAVVSGSEALQVKALTKLARVSKFAPQDILAATIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQADGALATEIGQS   96 (461)
Q Consensus        17 ~ll~~~~~~~~~~a~~~l~~la~~~~~~~l~~~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~   96 (461)
                      .++++.-..-+.-.-..+..|. .++.+.+..++..+.+-|.+    .  |+..+..|..++.++..   .+.++.+.  
T Consensus        81 ~LLss~kysEKqIGYl~is~L~-n~n~dl~klvin~iknDL~s----r--n~~fv~LAL~~I~niG~---re~~ea~~--  148 (938)
T KOG1077|consen   81 NLLSSNKYSEKQIGYLFISLLL-NENSDLMKLVINSIKNDLSS----R--NPTFVCLALHCIANIGS---REMAEAFA--  148 (938)
T ss_pred             HHhhcCCccHHHHhHHHHHHHH-hcchHHHHHHHHHHHhhhhc----C--CcHHHHHHHHHHHhhcc---HhHHHHhh--
Confidence            3445443333333333333333 22234444478888777765    3  33445558777777775   33333331  


Q ss_pred             CCHHHHHhcCCCC--CHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHhh-CChHH-
Q 044999           97 GVINSVLRLFPQS--DDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLNSCNDGTRRYLLEILSALA-LLREV-  172 (461)
Q Consensus        97 ~~l~~L~~ll~~~--~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~-~~~~~-  172 (461)
                      ..++   ++|.++  .+.+++.++.|+..+-..+++   .+...+....++.+|++.+-.+...+...+..++ .+++. 
T Consensus       149 ~DI~---KlLvS~~~~~~vkqkaALclL~L~r~spD---l~~~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~y  222 (938)
T KOG1077|consen  149 DDIP---KLLVSGSSMDYVKQKAALCLLRLFRKSPD---LVNPGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPESY  222 (938)
T ss_pred             hhhH---HHHhCCcchHHHHHHHHHHHHHHHhcCcc---ccChhhHHHHHHHHhCccccceeeehHHHHHHHHHcCCHHH
Confidence            1234   444443  355788899999988766543   3344467888999999988888788888888888 33333 


Q ss_pred             HHHHHhcCCHHHHHHHHc-------------CCCHHHHHHHHHHHHHhhcCchh--HHHHHhcCChHHHHHhcccC--CH
Q 044999          173 RRVLICLGGLRYLVEAVS-------------FGSMVSRERACQAIGLLAVTGRA--RRLLVELGVIPGLVELFHIG--DW  235 (461)
Q Consensus       173 ~~~~~~~~~l~~l~~~l~-------------~~~~~~~~~a~~~L~~l~~~~~~--~~~~~~~~~i~~L~~ll~~~--~~  235 (461)
                      +..+-.  .+..|.....             -+.+-++...++.|.++-...+.  +..+.+  +++.++...+.+  ..
T Consensus       223 k~~~~~--avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~p~~~D~~~r~~l~e--vl~~iLnk~~~~~~~k  298 (938)
T KOG1077|consen  223 KTCLPL--AVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQIYPTPEDPSTRARLNE--VLERILNKAQEPPKSK  298 (938)
T ss_pred             hhhHHH--HHHHHHHHHhhcccchhhceeecCCChHHHHHHHHHHHhCCCCCCchHHHHHHH--HHHHHHhccccCcccc
Confidence            222111  1222222221             12456788888888888443333  333333  455555555421  11


Q ss_pred             HHH-----HHHHHHHHHHhcC-ccchhhhhhcCCHHHHHHHhCCCChhHHHHHHHHHHHhccCcccHHHHH---HHHHHH
Q 044999          236 TTK-----LVAGNTLGVVAAH-VEYITPVAEAGAIPLYAELLQGPDSTGKEISEDVFCILAVSEANANAIA---EHLVRI  306 (461)
Q Consensus       236 ~~~-----~~a~~~L~~l~~~-~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~i~---~~l~~l  306 (461)
                      .++     -..+--..+++.+ +...+.+.  .++..|..++.+.+..+|..++..++.|+........+-   +.++..
T Consensus       299 ~vq~~na~naVLFeaI~l~~h~D~e~~ll~--~~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~s~davK~h~d~Ii~s  376 (938)
T KOG1077|consen  299 KVQHSNAKNAVLFEAISLAIHLDSEPELLS--RAVNQLGQFLSHRETNIRYLALESMCKLASSEFSIDAVKKHQDTIINS  376 (938)
T ss_pred             chHhhhhHHHHHHHHHHHHHHcCCcHHHHH--HHHHHHHHHhhcccccchhhhHHHHHHHHhccchHHHHHHHHHHHHHH
Confidence            122     1222233455555 44433332  347789999999999999999999999987766666555   888888


Q ss_pred             hc-cCCHHHHHHHHHHHHHhhCCCCchhHHhhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcC-ChhhHHHHH-------
Q 044999          307 LR-EGDNEANAAAADVLWDLAGYKHSVPVIRNSGAIPILVNLLRGENDEVREKVSGAIAQLSY-NEADRVALA-------  377 (461)
Q Consensus       307 l~-~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~-~~~~~~~~~-------  377 (461)
                      |+ ..+-.+|+.|+..|..+|..... +.++     ..+++++.+.++.+|+...-=.+-|+. ....-..++       
T Consensus       377 LkterDvSirrravDLLY~mcD~~Na-k~IV-----~elLqYL~tAd~sireeivlKvAILaEKyAtDy~WyVdviLqLi  450 (938)
T KOG1077|consen  377 LKTERDVSIRRRAVDLLYAMCDVSNA-KQIV-----AELLQYLETADYSIREEIVLKVAILAEKYATDYSWYVDVILQLI  450 (938)
T ss_pred             hccccchHHHHHHHHHHHHHhchhhH-HHHH-----HHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHH
Confidence            88 66899999999999999976443 3333     348888888888888765544444544 211111111       


Q ss_pred             -------hCCChHHHHHhccCCCHHHHHHHHHHHHHhcCCCcchHHHHHhhC
Q 044999          378 -------DAGAVPIMIELLHDESEELRDNAAESLINFSEDPLQHERISEAIG  422 (461)
Q Consensus       378 -------~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~~~  422 (461)
                             +.++-..+++.. ..+++++..|+.-+......+.+.+.+++.||
T Consensus       451 riagd~vsdeVW~RvvQiV-vNnedlq~yaak~~fe~Lq~~a~hE~mVKvgg  501 (938)
T KOG1077|consen  451 RIAGDYVSDEVWYRVVQIV-VNNEDLQGYAAKRLFEYLQKPACHENMVKVGG  501 (938)
T ss_pred             HHhcccccHHHHHHhheeE-ecchhhhHHHHHHHHHHHhhhHHHHHHHHhhh
Confidence                   111122222222 36888999999999988888888888877663

>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.76  E-value=6.9e-05  Score=72.16  Aligned_cols=366  Identities=14%  Similarity=0.080  Sum_probs=216.6

Q ss_pred             hcCCHHHHHHHHHHHHhhcCCCchhHHHhhHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHhcCCchhHHHHHhcCCH
Q 044999           20 VSGSEALQVKALTKLARVSKFAPQDILAATIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQADGALATEIGQSGVI   99 (461)
Q Consensus        20 ~~~~~~~~~~a~~~l~~la~~~~~~~l~~~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l   99 (461)
                      +|.+..-.-.|..+|+.+.++...+.   .-+-++.+|.+      ..|-+++.|+..|+.+...=++..+.      ..
T Consensus       119 ~S~n~ye~giAL~GLS~fvTpdLARD---La~Dv~tLL~s------skpYvRKkAIl~lykvFLkYPeAlr~------~F  183 (877)
T KOG1059|consen  119 NSSNVYEVGLALSGLSCIVTPDLARD---LADDVFTLLNS------SKPYVRKKAILLLYKVFLKYPEALRP------CF  183 (877)
T ss_pred             ccCccchhhheecccccccCchhhHH---HHHHHHHHHhc------CchHHHHHHHHHHHHHHHhhhHhHhh------hH
Confidence            34443333334444444443322222   44566777765      33557777999999998741333443      35


Q ss_pred             HHHHhcCCCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhcC-CChHHHHHHHHHHHHhh-CChHHHHHHH
Q 044999          100 NSVLRLFPQSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLNS-CNDGTRRYLLEILSALA-LLREVRRVLI  177 (461)
Q Consensus       100 ~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll~~-~~~~~~~~a~~~L~~l~-~~~~~~~~~~  177 (461)
                      +.|++-|.++||.|+..|+..++.|+..+|.+--.+     -|.+.+++.+ .+.-+....+..+++++ ..+.....  
T Consensus       184 prL~EkLeDpDp~V~SAAV~VICELArKnPknyL~L-----AP~ffkllttSsNNWmLIKiiKLF~aLtplEPRLgKK--  256 (877)
T KOG1059|consen  184 PRLVEKLEDPDPSVVSAAVSVICELARKNPQNYLQL-----APLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRLGKK--  256 (877)
T ss_pred             HHHHHhccCCCchHHHHHHHHHHHHHhhCCcccccc-----cHHHHHHHhccCCCeehHHHHHHHhhccccCchhhhh--
Confidence            899999999999999999999999999887664333     4678887754 45567778888888888 45554444  


Q ss_pred             hcCCHHHHHHHHcCCCH-HHHHHHHHHHH--HhhcCchhHHHHHhcCChHHHHHhcccCCHHHHHHHHHHHHHHhcC-cc
Q 044999          178 CLGGLRYLVEAVSFGSM-VSRERACQAIG--LLAVTGRARRLLVELGVIPGLVELFHIGDWTTKLVAGNTLGVVAAH-VE  253 (461)
Q Consensus       178 ~~~~l~~l~~~l~~~~~-~~~~~a~~~L~--~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~-~~  253 (461)
                         .++.+.+++.+... .+...+..++.  +++...++...-.+ -+++.|-.++.+.++..+..++.+++.+... +.
T Consensus       257 ---Lieplt~li~sT~AmSLlYECvNTVVa~s~s~g~~d~~asiq-LCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~  332 (877)
T KOG1059|consen  257 ---LIEPITELMESTVAMSLLYECVNTVVAVSMSSGMSDHSASIQ-LCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPK  332 (877)
T ss_pred             ---hhhHHHHHHHhhHHHHHHHHHHHHheeehhccCCCCcHHHHH-HHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHH
Confidence               46778888877643 56666666554  33333323221111 1467777788899999999999999998865 22


Q ss_pred             chhhhhhcCCHHHHHHHhCCCChhHHHHHHHHHHHhccCcccHHHHHHHHHHHh-ccCCHHHHHHHHHHHHHhhCCCCch
Q 044999          254 YITPVAEAGAIPLYAELLQGPDSTGKEISEDVFCILAVSEANANAIAEHLVRIL-REGDNEANAAAADVLWDLAGYKHSV  332 (461)
Q Consensus       254 ~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~l~~ll-~~~~~~~~~~a~~~L~~l~~~~~~~  332 (461)
                      .-...     -..++.+|.+.++.+|..|+..|.-+... ++-.+|+..|+..+ .......+...+.-+-.+|+-.. -
T Consensus       333 ~Vqa~-----kdlIlrcL~DkD~SIRlrALdLl~gmVsk-kNl~eIVk~LM~~~~~ae~t~yrdell~~II~iCS~sn-Y  405 (877)
T KOG1059|consen  333 AVQAH-----KDLILRCLDDKDESIRLRALDLLYGMVSK-KNLMEIVKTLMKHVEKAEGTNYRDELLTRIISICSQSN-Y  405 (877)
T ss_pred             HHHHh-----HHHHHHHhccCCchhHHHHHHHHHHHhhh-hhHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhhhhh-h
Confidence            21111     35688899999999999999988877653 35555665555544 34344555555555555553211 1


Q ss_pred             hHHhhcC-CHHHHHHhhcCCCHHHHHHHHHHHHHhcC-ChhhHHHHHhCCChHHHHH--hc------cCCCHHHHHHHHH
Q 044999          333 PVIRNSG-AIPILVNLLRGENDEVREKVSGAIAQLSY-NEADRVALADAGAVPIMIE--LL------HDESEELRDNAAE  402 (461)
Q Consensus       333 ~~l~~~g-~i~~L~~ll~~~~~~v~~~a~~~L~~l~~-~~~~~~~~~~~~~i~~L~~--ll------~~~~~~~~~~a~~  402 (461)
                      ..+.+.. .+..|+++.+-+..+--.....-+..++. -+..|...++.  +..|+.  ++      ++.-.++..+|+|
T Consensus       406 ~~ItdFEWYlsVlveLa~l~~~~~G~~I~eQi~Dv~iRV~~iR~fsV~~--m~~Ll~~~~~~~s~q~n~~l~eVL~AaaW  483 (877)
T KOG1059|consen  406 QYITDFEWYLSVLVELARLEGTRHGSLIAEQIIDVAIRVPSIRPFSVSQ--MSALLDDPLLAGSAQINSQLCEVLYAAAW  483 (877)
T ss_pred             hhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHheechhhhHhHHHH--HHHHHhchhhccchhhccchhHHHHHHHH
Confidence            1222111 23445555543221111122222334443 33333333221  222222  11      2235678889999


Q ss_pred             HHHHhcCCCcchHHHHHh
Q 044999          403 SLINFSEDPLQHERISEA  420 (461)
Q Consensus       403 ~L~~l~~~~~~~~~l~~~  420 (461)
                      ++...+..-++.....++
T Consensus       484 i~GEyse~ven~~~~lea  501 (877)
T KOG1059|consen  484 ILGEYSEFVENPNDTLEA  501 (877)
T ss_pred             HHHHHHHHhhCHHHHHHH
Confidence            998887666555444443

>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]

Probab=98.72  E-value=5.5e-06  Score=82.59  Aligned_cols=421  Identities=15%  Similarity=0.085  Sum_probs=271.3

Q ss_pred             HHHhHHHHHHHhhcCCHHHHHHHHHHHHhhcCCCchhHHHh-hHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHhcCC
Q 044999            8 WEEAFNRFEQAVVSGSEALQVKALTKLARVSKFAPQDILAA-TIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQAD   86 (461)
Q Consensus         8 ~~~~~~~l~~ll~~~~~~~~~~a~~~l~~la~~~~~~~l~~-~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~   86 (461)
                      -.+..+.+-++..+.++.+|..++.-+++++..-....... .++.+.++...    +.  ..++..|...+..+....+
T Consensus       235 k~elr~~~~~lc~d~~~~Vr~~~a~~l~~~a~~~~~~~~~s~v~~~~~~L~~D----dq--dsVr~~a~~~~~~l~~l~~  308 (759)
T KOG0211|consen  235 KRELRPIVQSLCQDDTPMVRRAVASNLGNIAKVLESEIVKSEVLPTLIQLLRD----DQ--DSVREAAVESLVSLLDLLD  308 (759)
T ss_pred             HHHHHHHHHhhccccchhhHHHHHhhhHHHHHHHHHHHHHhhccHHHhhhhhc----ch--hhHHHHHHHHHHHHHHhcC
Confidence            44555667778888899999999999999992211222223 88888888875    22  3355557777777776322


Q ss_pred             chhHHHHHhcCCHHHHHhcCCCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHh
Q 044999           87 GALATEIGQSGVINSVLRLFPQSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLNSCNDGTRRYLLEILSAL  166 (461)
Q Consensus        87 ~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l  166 (461)
                      ...   -....+.+.+++...++++.++...+.....+...-.   .......-++....+++....+.+.....-...+
T Consensus       309 ~~~---d~~~~~~~~l~~~~~d~~~~v~~~~~~~~~~L~~~~~---~~~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l  382 (759)
T KOG0211|consen  309 DDD---DVVKSLTESLVQAVEDGSWRVSYMVADKFSELSSAVG---PSATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKL  382 (759)
T ss_pred             Cch---hhhhhhhHHHHHHhcChhHHHHHHHhhhhhhHHHHhc---cccCcccchhhHHHHhcchhhhhhHHhhcchHHH
Confidence            111   2233467889999999998877777766665553111   1222233456677777777777777766666666


Q ss_pred             h--CChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhcccCCHHHHHHHHHH
Q 044999          167 A--LLREVRRVLICLGGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRARRLLVELGVIPGLVELFHIGDWTTKLVAGNT  244 (461)
Q Consensus       167 ~--~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~  244 (461)
                      +  .+.+....+.....++.+-.+..+.+..++.+.+..+..++..-+.-..+  ....+.++..+++..+.++......
T Consensus       383 ~~~l~~~~~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~k~~ti--~~llp~~~~~l~de~~~V~lnli~~  460 (759)
T KOG0211|consen  383 ACYLNASCYPNIPDSSILPEVQVLVLDNALHVRSALASVITGLSPILPKERTI--SELLPLLIGNLKDEDPIVRLNLIDK  460 (759)
T ss_pred             hhhcCcccccccchhhhhHHHHHHHhcccchHHHHHhccccccCccCCcCcCc--cccChhhhhhcchhhHHHHHhhHHH
Confidence            5  44445556666667888888888889999988887777765443321111  2357778888888899999887766


Q ss_pred             HHHHhcC-ccchhhhhhcCCHHHHHHHhCCCChhHHHHHHHHHHHhccCccc---HHHHHHHHHHHhccCCHHHHHHHHH
Q 044999          245 LGVVAAH-VEYITPVAEAGAIPLYAELLQGPDSTGKEISEDVFCILAVSEAN---ANAIAEHLVRILREGDNEANAAAAD  320 (461)
Q Consensus       245 L~~l~~~-~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~---~~~i~~~l~~ll~~~~~~~~~~a~~  320 (461)
                      +..+-.. +...........+|.+..+-.+..+.++......+..++.....   ...+.+.+...+.+...++++.|+.
T Consensus       461 ls~~~~v~~v~g~~~~s~slLp~i~el~~d~~wRvr~ail~~ip~la~q~~~~~~~~~~~~l~~~~l~d~v~~Ir~~aa~  540 (759)
T KOG0211|consen  461 LSLLEEVNDVIGISTVSNSLLPAIVELAEDLLWRVRLAILEYIPQLALQLGVEFFDEKLAELLRTWLPDHVYSIREAAAR  540 (759)
T ss_pred             HHHHHhccCcccchhhhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHhhhhHHhhHHHHHHHHhhhhhhHHHHHHHHHH
Confidence            6554443 44444555566688888887777888888888887777654331   1112244555555666789999999


Q ss_pred             HHHHhhCCCCchhHHhhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhccCCCHHHHHHH
Q 044999          321 VLWDLAGYKHSVPVIRNSGAIPILVNLLRGENDEVREKVSGAIAQLSYNEADRVALADAGAVPIMIELLHDESEELRDNA  400 (461)
Q Consensus       321 ~L~~l~~~~~~~~~l~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a  400 (461)
                      .+..++..-.  ........++.+......++...|...+.++..++.  -.-..+.....+|.+.++..+..+.+|.++
T Consensus       541 ~l~~l~~~~G--~~w~~~~~i~k~L~~~~q~~y~~R~t~l~si~~la~--v~g~ei~~~~Llp~~~~l~~D~vanVR~nv  616 (759)
T KOG0211|consen  541 NLPALVETFG--SEWARLEEIPKLLAMDLQDNYLVRMTTLFSIHELAE--VLGQEITCEDLLPVFLDLVKDPVANVRINV  616 (759)
T ss_pred             HhHHHHHHhC--cchhHHHhhHHHHHHhcCcccchhhHHHHHHHHHHH--HhccHHHHHHHhHHHHHhccCCchhhhhhH
Confidence            9998884322  222333456677777666677778877777776664  222234444568999999999999999999


Q ss_pred             HHHHHHhcCCCcchHHHHHhhCCchHHhHHHHHHHhhhchhHHHHHHHHHhHhhh
Q 044999          401 AESLINFSEDPLQHERISEAIGIPSFQSMQSRLTRIRASDDLMARSMRRMSIEQL  455 (461)
Q Consensus       401 ~~~L~~l~~~~~~~~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~  455 (461)
                      +..|..+...-...  .    ..+.+..++..+.+   +.+.+++++|..+...+
T Consensus       617 ak~L~~i~~~L~~~--~----~~~~v~pll~~L~~---d~~~dvr~~a~~a~~~i  662 (759)
T KOG0211|consen  617 AKHLPKILKLLDES--V----RDEEVLPLLETLSS---DQELDVRYRAILAFGSI  662 (759)
T ss_pred             HHHHHHHHhhcchH--H----HHHHHHHHHHHhcc---CcccchhHHHHHHHHHH
Confidence            99998775332211  1    11223333333332   34677777777665544

>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]

Probab=98.71  E-value=0.00012  Score=73.53  Aligned_cols=317  Identities=17%  Similarity=0.154  Sum_probs=212.6

Q ss_pred             HhcCCHHHHHhcCCC--CC-------HHHHHHHHHHHHHHhc-cChhhHHHHHHcCCHHHHHHHhcCC-----------C
Q 044999           94 GQSGVINSVLRLFPQ--SD-------DSFRTVLVKCLRVFVT-FGNENRVIVARNGGLEIVIDLLNSC-----------N  152 (461)
Q Consensus        94 ~~~~~l~~L~~ll~~--~~-------~~~~~~~~~~l~~l~~-~~~~~~~~~~~~g~i~~L~~ll~~~-----------~  152 (461)
                      ++..+-|.|++...-  +|       ..-...++..+.++.. .+.-+.+.++..||++.|..+++..           +
T Consensus      1372 yKYAGYPMLi~tiT~e~~D~~lfSk~~~PLL~AA~ELa~~T~~~SaLNaEELrRdnGle~L~tafSRCv~Vvt~~s~p~d 1451 (2235)
T KOG1789|consen 1372 YKYAGYPMLIKTITLEAKDEALFSKGGGPLLSAAIELANYTLISSALNAEELRRDNGLEALVTAFSRCVPVVTMSSLPDD 1451 (2235)
T ss_pred             cccCcchhhhhhhhhcccchhhhcCCCCcchHHHHHHHHHHHhhhhcCHHHHhhcccHHHHHHHHhhhheeeccccCCCc
Confidence            455566777765431  11       1112334444443332 3445678889999999999887542           2


Q ss_pred             h--HHHHHHHHHHHHhhCChHHHHHHHhcC-CHHHHHHHHcCC-CHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHH
Q 044999          153 D--GTRRYLLEILSALALLREVRRVLICLG-GLRYLVEAVSFG-SMVSRERACQAIGLLAVTGRARRLLVELGVIPGLVE  228 (461)
Q Consensus       153 ~--~~~~~a~~~L~~l~~~~~~~~~~~~~~-~l~~l~~~l~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~  228 (461)
                      +  .+....+.++...+..+..|+.+.+.. ++..++.++.-+ -+.+...++.++..++....-+..+.+.|++-.++.
T Consensus      1452 mav~vc~~v~~c~SVaaQFE~cR~~~~EmPSiI~Dl~r~l~f~~vPr~~~aa~qci~~~aVd~~LQ~~LfqAG~LWYlLp 1531 (2235)
T KOG1789|consen 1452 MAVRVCIHVCDCFSVAAQFEACRQRLMEMPSIIGDLTRLLQFSNLPRLSTAAAQCIRAMAVDTLLQFQLFQAGVLWYLLP 1531 (2235)
T ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhccccHHHHHHHHHHHHHhhhHHHHHHHHHhhhHHHHHH
Confidence            2  455677788888888899999999864 788888888766 457788888999999888888888888898888887


Q ss_pred             hccc-------------CCHH-------HHHHHHHHHHHHhcC-------ccch---hhh-----------hhcCCHHHH
Q 044999          229 LFHI-------------GDWT-------TKLVAGNTLGVVAAH-------VEYI---TPV-----------AEAGAIPLY  267 (461)
Q Consensus       229 ll~~-------------~~~~-------~~~~a~~~L~~l~~~-------~~~~---~~~-----------~~~g~i~~L  267 (461)
                      +|-+             ++..       .-..++.+|..|+..       +++-   ..+           .+......+
T Consensus      1532 ~Lf~YDyTlEESg~q~Se~~n~Q~~aNslA~~s~~ALSRL~G~~AdE~~TP~N~T~~~sL~alLTPyiAr~Lk~e~~~~i 1611 (2235)
T KOG1789|consen 1532 HLFHYDYTLEESGVQHSEDSNKQSLANSLARSSCEALSRLAGFRADEENTPDNDTVQASLRALLTPYIARCLKLETNDMV 1611 (2235)
T ss_pred             HHhcccccccccCccccccchHHHHHHHHHHHHHHHHHHHhccccccccCCCChhHHHHHHHhccHHHHHHHHHHHHHHH
Confidence            6641             1111       112344455544322       1110   000           000001111


Q ss_pred             HHHhCCC--C----------------------------------------------------------------------
Q 044999          268 AELLQGP--D----------------------------------------------------------------------  275 (461)
Q Consensus       268 ~~ll~~~--~----------------------------------------------------------------------  275 (461)
                      ++.+++.  +                                                                      
T Consensus      1612 Lk~LNsN~E~Py~IWNn~TRaELLeFve~Qracq~~~G~~D~~yg~eF~Ys~h~KEliVG~ifirVYNeqPtf~l~ePk~ 1691 (2235)
T KOG1789|consen 1612 LKTLNSNMENPYMIWNNGTRAELLEFVERQRACQTSNGPTDELYGAEFEYSVHKKELIVGDIFIRVYNEQPTFALHEPKK 1691 (2235)
T ss_pred             HHHhhcCCCCceeeecCccHHHHHHHHHHHHhccCCCCCchhhccceeeehhhccceeeeeEEEEeecCCCchhhcCcHH
Confidence            1111110  0                                                                      


Q ss_pred             -----------------------------------------------hhHHHHHHHHHHHhc-cCcc------cHHHHH-
Q 044999          276 -----------------------------------------------STGKEISEDVFCILA-VSEA------NANAIA-  300 (461)
Q Consensus       276 -----------------------------------------------~~~~~~a~~~L~~l~-~~~~------~~~~i~-  300 (461)
                                                                     .+-...++.+|.|+. .+++      ....+. 
T Consensus      1692 Fa~~LlDyI~S~~~~l~~~~~~~~~s~d~ie~~~~V~sE~HgD~lPs~~~v~m~LtAL~Nli~~nPdlasvfgSe~~lig 1771 (2235)
T KOG1789|consen 1692 FAIDLLDYIKSHSAELTGAPKPKAISDDLIEIDWGVGSEAHGDSLPTETKVLMTLTALANLVSANPDLASVFGSEILLIG 1771 (2235)
T ss_pred             HHHHHHHHHHHhHHHhcCCCCccccccchhhhhcccchhhhcCCCChHHHHHHHHHHHHHHHhhCcchhhhccchhhhhc
Confidence                                                           011334555666663 3332      222222 


Q ss_pred             --HHHHHHhcc-CCHHHHHHHHHHHHHhhCCCCchhHHhhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCChhhHHHHH
Q 044999          301 --EHLVRILRE-GDNEANAAAADVLWDLAGYKHSVPVIRNSGAIPILVNLLRGENDEVREKVSGAIAQLSYNEADRVALA  377 (461)
Q Consensus       301 --~~l~~ll~~-~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~  377 (461)
                        +.+...++. +++.++..|+..+..+..+.++...+...|.+..|+.+|.+ -|..+..++.+|..|+.+++.-....
T Consensus      1772 ~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan~~Cv~~~a~~~vL~~LL~lLHS-~PS~R~~vL~vLYAL~S~~~i~keA~ 1850 (2235)
T KOG1789|consen 1772 NFPLLITYLRCRKHPKLQILALQVILLATANKECVTDLATCNVLTTLLTLLHS-QPSMRARVLDVLYALSSNGQIGKEAL 1850 (2235)
T ss_pred             ccHHHHHHHHHcCCchHHHHHHHHHHHHhcccHHHHHHHhhhHHHHHHHHHhc-ChHHHHHHHHHHHHHhcCcHHHHHHH
Confidence              666666654 47889999999999999999999999999999999999987 47789999999999999888888888


Q ss_pred             hCCChHHHHHhc-cCCCHHHHHHHHHHHHHhcCCC
Q 044999          378 DAGAVPIMIELL-HDESEELRDNAAESLINFSEDP  411 (461)
Q Consensus       378 ~~~~i~~L~~ll-~~~~~~~~~~a~~~L~~l~~~~  411 (461)
                      ++|++.-+..++ .+.+++.|..++..+..+..++
T Consensus      1851 ~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adk 1885 (2235)
T KOG1789|consen 1851 EHGGLMYILSILCLTNSDQQRAQAAELLAKLQADK 1885 (2235)
T ss_pred             hcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhcc
Confidence            999988888877 6788999999999999998776

>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.71  E-value=4.8e-05  Score=73.91  Aligned_cols=284  Identities=10%  Similarity=0.091  Sum_probs=184.2

Q ss_pred             HHHHHhcCCCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHhhCChHHHHHHHh
Q 044999           99 INSVLRLFPQSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLNSCNDGTRRYLLEILSALALLREVRRVLIC  178 (461)
Q Consensus        99 l~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~  178 (461)
                      +-.+.+...+..+.||+.|+.++-.+-.-+++.+..+.     +.+-.+|.+.++.+.-.|+.+...+|-  +.-+.+ .
T Consensus       145 llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e~k~qL~-----e~I~~LLaD~splVvgsAv~AF~evCP--erldLI-H  216 (968)
T KOG1060|consen  145 LLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPEQKDQLE-----EVIKKLLADRSPLVVGSAVMAFEEVCP--ERLDLI-H  216 (968)
T ss_pred             HHHHHHHhcCCcHHHHHHHHHhhHHHhcCChhhHHHHH-----HHHHHHhcCCCCcchhHHHHHHHHhch--hHHHHh-h
Confidence            34445677788999999999999988877766666443     346668888888888888888887772  222222 2


Q ss_pred             cCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCchhHH----HH---------------------H-hcC---ChHHHHHh
Q 044999          179 LGGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRARR----LL---------------------V-ELG---VIPGLVEL  229 (461)
Q Consensus       179 ~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~----~~---------------------~-~~~---~i~~L~~l  229 (461)
                       +-...+++++.+-++.-|...+..|..-++..-...    ..                     . +.+   .++..-.+
T Consensus       217 -knyrklC~ll~dvdeWgQvvlI~mL~RYAR~~l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpL  295 (968)
T KOG1060|consen  217 -KNYRKLCRLLPDVDEWGQVVLINMLTRYARHQLPDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPL  295 (968)
T ss_pred             -HHHHHHHhhccchhhhhHHHHHHHHHHHHHhcCCCccccccccccCcccccccccccccCCCcccCccHHHHHHhccHH
Confidence             235667777776665556666666655543221100    00                     0 000   12233345


Q ss_pred             cccCCHHHHHHHHHHHHHHhcCccchhhhhhcCCHHHHHHHhCCCChhHHHHHHHHHHHhccCcccHHHHH-HHHHHHh-
Q 044999          230 FHIGDWTTKLVAGNTLGVVAAHVEYITPVAEAGAIPLYAELLQGPDSTGKEISEDVFCILAVSEANANAIA-EHLVRIL-  307 (461)
Q Consensus       230 l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~i~-~~l~~ll-  307 (461)
                      +.+.++.+...++.+.+.++-..      -..+++..|+.+|.+. .+++...+..+..++.   -+..+. |.+-..+ 
T Consensus       296 l~S~n~sVVmA~aql~y~lAP~~------~~~~i~kaLvrLLrs~-~~vqyvvL~nIa~~s~---~~~~lF~P~lKsFfv  365 (968)
T KOG1060|consen  296 LQSRNPSVVMAVAQLFYHLAPKN------QVTKIAKALVRLLRSN-REVQYVVLQNIATISI---KRPTLFEPHLKSFFV  365 (968)
T ss_pred             HhcCCcHHHHHHHhHHHhhCCHH------HHHHHHHHHHHHHhcC-CcchhhhHHHHHHHHh---cchhhhhhhhhceEe
Confidence            66788899999999999887532      1234578999988754 5566644444444332   223333 5555543 


Q ss_pred             ccCCH-HHHHHHHHHHHHhhCCCCchhHHhhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcC-ChhhHHHHHhCCChHHH
Q 044999          308 REGDN-EANAAAADVLWDLAGYKHSVPVIRNSGAIPILVNLLRGENDEVREKVSGAIAQLSY-NEADRVALADAGAVPIM  385 (461)
Q Consensus       308 ~~~~~-~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~-~~~~~~~~~~~~~i~~L  385 (461)
                      ++.+| .++..=+.+|.+|+........      ++.+..++.+.+.++...+..+|+.++. ...     +...++..|
T Consensus       366 ~ssDp~~vk~lKleiLs~La~esni~~I------LrE~q~YI~s~d~~faa~aV~AiGrCA~~~~s-----v~~tCL~gL  434 (968)
T KOG1060|consen  366 RSSDPTQVKILKLEILSNLANESNISEI------LRELQTYIKSSDRSFAAAAVKAIGRCASRIGS-----VTDTCLNGL  434 (968)
T ss_pred             ecCCHHHHHHHHHHHHHHHhhhccHHHH------HHHHHHHHhcCchhHHHHHHHHHHHHHHhhCc-----hhhHHHHHH
Confidence            44444 5666778889999865443333      3347788888877788888899998886 222     334578889


Q ss_pred             HHhccCCCHHHHHHHHHHHHHhcCCCc
Q 044999          386 IELLHDESEELRDNAAESLINFSEDPL  412 (461)
Q Consensus       386 ~~ll~~~~~~~~~~a~~~L~~l~~~~~  412 (461)
                      +.++++.+..+...++..+..|...+.
T Consensus       435 v~Llsshde~Vv~eaV~vIk~Llq~~p  461 (968)
T KOG1060|consen  435 VQLLSSHDELVVAEAVVVIKRLLQKDP  461 (968)
T ss_pred             HHHHhcccchhHHHHHHHHHHHHhhCh
Confidence            999999999999999999999876654

>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]

Probab=98.68  E-value=5.4e-06  Score=78.11  Aligned_cols=260  Identities=15%  Similarity=0.141  Sum_probs=171.3

Q ss_pred             CHHHHHHHhcCCChHHHHHHHHHHHHhhCChH---HHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCchhHH-
Q 044999          140 GLEIVIDLLNSCNDGTRRYLLEILSALALLRE---VRRVLICLGGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRARR-  215 (461)
Q Consensus       140 ~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~---~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~-  215 (461)
                      ++..++.+|++..+++|..|+.....++.--.   .-..+...|.  .|.+.+....+++....+.++..+.+....+. 
T Consensus       605 ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~--iLyE~lge~ypEvLgsil~Ai~~I~sv~~~~~m  682 (975)
T COG5181         605 IVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGN--ILYENLGEDYPEVLGSILKAICSIYSVHRFRSM  682 (975)
T ss_pred             HHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhH--HHHHhcCcccHHHHHHHHHHHHHHhhhhccccc
Confidence            45667788999999999999988887762211   1223333333  36777788888998888888888776655422 


Q ss_pred             HHHhcCChHHHHHhcccCCHHHHHHHHHHHHHHhcC-ccchhhhhh-cCCHHHHHHHhCCCChhHHHHHHHHHHHhccCc
Q 044999          216 LLVELGVIPGLVELFHIGDWTTKLVAGNTLGVVAAH-VEYITPVAE-AGAIPLYAELLQGPDSTGKEISEDVFCILAVSE  293 (461)
Q Consensus       216 ~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~-~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~  293 (461)
                      .-.-.|.+|.|..+|++.+..++......++.++.. ++.- ...+ ..+--.|+++|++.+.++|.+|..+++.++..-
T Consensus       683 qpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi-~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~ai  761 (975)
T COG5181         683 QPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYI-GVREWMRICFELVDSLKSWNKEIRRNATETFGCISRAI  761 (975)
T ss_pred             CCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccC-CHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHhhc
Confidence            222367999999999999999999999999999987 3321 1111 122334788888899999999999998876432


Q ss_pred             ccHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCchhHHhhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCChh--
Q 044999          294 ANANAIAEHLVRILREGDNEANAAAADVLWDLAGYKHSVPVIRNSGAIPILVNLLRGENDEVREKVSGAIAQLSYNEA--  371 (461)
Q Consensus       294 ~~~~~i~~~l~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~--  371 (461)
                      ..+. +...|++-|+..+-..|....-++.-.+...      .-..++|.|+.=-.++...||...+++++.+-....  
T Consensus       762 GPqd-vL~~LlnnLkvqeRq~RvctsvaI~iVae~c------gpfsVlP~lm~dY~TPe~nVQnGvLkam~fmFeyig~~  834 (975)
T COG5181         762 GPQD-VLDILLNNLKVQERQQRVCTSVAISIVAEYC------GPFSVLPTLMSDYETPEANVQNGVLKAMCFMFEYIGQA  834 (975)
T ss_pred             CHHH-HHHHHHhcchHHHHHhhhhhhhhhhhhHhhc------CchhhHHHHHhcccCchhHHHHhHHHHHHHHHHHHHHH
Confidence            2211 2234444444444333433333333333210      012345555555556677789888888888776332  


Q ss_pred             hHHHHHhCCChHHHHHhccCCCHHHHHHHHHHHHHhcCCC
Q 044999          372 DRVALADAGAVPIMIELLHDESEELRDNAAESLINFSEDP  411 (461)
Q Consensus       372 ~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~  411 (461)
                      .+..+.  -+.|.|-..+.+.++.-|+.|...+..|+.++
T Consensus       835 s~dYvy--~itPlleDAltDrD~vhRqta~nvI~Hl~Lnc  872 (975)
T COG5181         835 SLDYVY--SITPLLEDALTDRDPVHRQTAMNVIRHLVLNC  872 (975)
T ss_pred             HHHHHH--HhhHHHHhhhcccchHHHHHHHHHHHHHhcCC
Confidence            233332  35677788888899999999999999887765

>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.65  E-value=2.9e-06  Score=82.21  Aligned_cols=366  Identities=13%  Similarity=0.125  Sum_probs=222.4

Q ss_pred             cHHHhHHHHHHHhhcCCHHHHHHHHHHHHhhcCCCchhHHHh-hHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHhcC
Q 044999            7 NWEEAFNRFEQAVVSGSEALQVKALTKLARVSKFAPQDILAA-TIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQA   85 (461)
Q Consensus         7 ~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~la~~~~~~~l~~-~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~   85 (461)
                      +....|+.+++.....|-+.+...=.-+.+-+...+.  ... ++..+++-...      +++..+..|.+.+..+-.. 
T Consensus        46 DvSslF~dvvk~~~T~dlelKKlvyLYl~nYa~~~P~--~a~~avnt~~kD~~d------~np~iR~lAlrtm~~l~v~-  116 (734)
T KOG1061|consen   46 DVSSLFPDVVKCMQTRDLELKKLVYLYLMNYAKGKPD--LAILAVNTFLKDCED------PNPLIRALALRTMGCLRVD-  116 (734)
T ss_pred             chHhhhHHHHhhcccCCchHHHHHHHHHHHhhccCch--HHHhhhhhhhccCCC------CCHHHHHHHhhceeeEeeh-
Confidence            3455566666666666655555554445555411111  111 44444444432      4455555566666555541 


Q ss_pred             CchhHHHHHhcCCHHHHHhcCCCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHH
Q 044999           86 DGALATEIGQSGVINSVLRLFPQSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLNSCNDGTRRYLLEILSA  165 (461)
Q Consensus        86 ~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~  165 (461)
                        ...     .....++.+.++++++.++..++.++.++-..+   .......|.++.|-.++.++++.+...|+.+|..
T Consensus       117 --~i~-----ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~---~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~e  186 (734)
T KOG1061|consen  117 --KIT-----EYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDID---PDLVEDSGLVDALKDLLSDSNPMVVANALAALSE  186 (734)
T ss_pred             --HHH-----HHHHHHHHHhccCCChhHHHHHHHHHHHhhcCC---hhhccccchhHHHHHHhcCCCchHHHHHHHHHHH
Confidence              111     123578899999999999999999998887544   5677889999999999999999999999999999


Q ss_pred             hhC-ChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhcccCCHHHHHHHHHH
Q 044999          166 LAL-LREVRRVLICLGGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRARRLLVELGVIPGLVELFHIGDWTTKLVAGNT  244 (461)
Q Consensus       166 l~~-~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~  244 (461)
                      +.. +++.-...+....+..++..+..-++.-+...+.++.+-...++ .. .  ...+..+...+++.+..+...+..+
T Consensus       187 I~e~~~~~~~~~l~~~~~~~lL~al~ec~EW~qi~IL~~l~~y~p~d~-~e-a--~~i~~r~~p~Lqh~n~avvlsavKv  262 (734)
T KOG1061|consen  187 IHESHPSVNLLELNPQLINKLLEALNECTEWGQIFILDCLAEYVPKDS-RE-A--EDICERLTPRLQHANSAVVLSAVKV  262 (734)
T ss_pred             HHHhCCCCCcccccHHHHHHHHHHHHHhhhhhHHHHHHHHHhcCCCCc-hh-H--HHHHHHhhhhhccCCcceEeehHHH
Confidence            983 33211111111233344444443343334444444433322222 11 1  2256777788888888888888888


Q ss_pred             HHHHhcCccchhhhhhcCCHHHHHHHhCCCChhHHHHHHHHHHHhccCcccHHHHH-HHHHH-HhccCCH-HHHHHHHHH
Q 044999          245 LGVVAAHVEYITPVAEAGAIPLYAELLQGPDSTGKEISEDVFCILAVSEANANAIA-EHLVR-ILREGDN-EANAAAADV  321 (461)
Q Consensus       245 L~~l~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~i~-~~l~~-ll~~~~~-~~~~~a~~~  321 (461)
                      +.++...........-...-+.++.++.+.. +++..++.=+.-+-...+.   +. ..+-. ..+..+| -++..=+.+
T Consensus       263 ~l~~~~~~~~~~~~~~~K~~~pl~tlls~~~-e~qyvaLrNi~lil~~~p~---~~~~~~~~Ff~kynDPiYvK~eKlei  338 (734)
T KOG1061|consen  263 ILQLVKYLKQVNELLFKKVAPPLVTLLSSES-EIQYVALRNINLILQKRPE---ILKVEIKVFFCKYNDPIYVKLEKLEI  338 (734)
T ss_pred             HHHHHHHHHHHHHHHHHHhcccceeeecccc-hhhHHHHhhHHHHHHhChH---HHHhHhHeeeeecCCchhhHHHHHHH
Confidence            8888766222323333344566777776665 7666554433332222111   11 11111 1233343 455566777


Q ss_pred             HHHhhCCCCchhHHhhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhccCCCHHHHHHHH
Q 044999          322 LWDLAGYKHSVPVIRNSGAIPILVNLLRGENDEVREKVSGAIAQLSYNEADRVALADAGAVPIMIELLHDESEELRDNAA  401 (461)
Q Consensus       322 L~~l~~~~~~~~~l~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~  401 (461)
                      +..++......+      ++..+.++-...+.+...++++++++++..-+..     +++++.|+++++.+...+.+.+.
T Consensus       339 l~~la~~~nl~q------vl~El~eYatevD~~fvrkaIraig~~aik~e~~-----~~cv~~lLell~~~~~yvvqE~~  407 (734)
T KOG1061|consen  339 LIELANDANLAQ------VLAELKEYATEVDVDFVRKAVRAIGRLAIKAEQS-----NDCVSILLELLETKVDYVVQEAI  407 (734)
T ss_pred             HHHHhhHhHHHH------HHHHHHHhhhhhCHHHHHHHHHHhhhhhhhhhhh-----hhhHHHHHHHHhhcccceeeehh
Confidence            777765433222      4455777777888999999999999999832211     78899999999888888888888


Q ss_pred             HHHHHhcCC
Q 044999          402 ESLINFSED  410 (461)
Q Consensus       402 ~~L~~l~~~  410 (461)
                      ..+..+.+.
T Consensus       408 vvi~dilRk  416 (734)
T KOG1061|consen  408 VVIRDILRK  416 (734)
T ss_pred             HHHHhhhhc
Confidence            888888654

>TIGR02270 conserved hypothetical protein

Probab=98.62  E-value=2.3e-05  Score=73.67  Aligned_cols=250  Identities=14%  Similarity=0.051  Sum_probs=172.9

Q ss_pred             CCHHHHHhcCC-CCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHhhCChHHHHH
Q 044999           97 GVINSVLRLFP-QSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLNSCNDGTRRYLLEILSALALLREVRRV  175 (461)
Q Consensus        97 ~~l~~L~~ll~-~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~  175 (461)
                      .+++.++..+. ..+..+...++..+...  .++.         ++..+++.+.+.++.++..+..+|..+         
T Consensus        54 ~a~~~L~~aL~~d~~~ev~~~aa~al~~~--~~~~---------~~~~L~~~L~d~~~~vr~aaa~ALg~i---------  113 (410)
T TIGR02270        54 AATELLVSALAEADEPGRVACAALALLAQ--EDAL---------DLRSVLAVLQAGPEGLCAGIQAALGWL---------  113 (410)
T ss_pred             hHHHHHHHHHhhCCChhHHHHHHHHHhcc--CChH---------HHHHHHHHhcCCCHHHHHHHHHHHhcC---------
Confidence            35778888884 56677655554444311  1211         378899999999999999999999754         


Q ss_pred             HHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhcccCCHHHHHHHHHHHHHHhcCccch
Q 044999          176 LICLGGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRARRLLVELGVIPGLVELFHIGDWTTKLVAGNTLGVVAAHVEYI  255 (461)
Q Consensus       176 ~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~  255 (461)
                       ...+..+.|..++++.++.++..++.+++..           .....+.+..+++++++.++..|+.+|+.+..     
T Consensus       114 -~~~~a~~~L~~~L~~~~p~vR~aal~al~~r-----------~~~~~~~L~~~L~d~d~~Vra~A~raLG~l~~-----  176 (410)
T TIGR02270       114 -GGRQAEPWLEPLLAASEPPGRAIGLAALGAH-----------RHDPGPALEAALTHEDALVRAAALRALGELPR-----  176 (410)
T ss_pred             -CchHHHHHHHHHhcCCChHHHHHHHHHHHhh-----------ccChHHHHHHHhcCCCHHHHHHHHHHHHhhcc-----
Confidence             2334577788999999999999888877772           12246788889999999999999999998754     


Q ss_pred             hhhhhcCCHHHHHHHhCCCChhHHHHHHHHHHHhccCcccHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCchhHH
Q 044999          256 TPVAEAGAIPLYAELLQGPDSTGKEISEDVFCILAVSEANANAIAEHLVRILREGDNEANAAAADVLWDLAGYKHSVPVI  335 (461)
Q Consensus       256 ~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~l~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~l  335 (461)
                           ...++.|...+.+.++.+|..|+..+..+.. +.    -.+.+..............+..++... .        
T Consensus       177 -----~~a~~~L~~al~d~~~~VR~aA~~al~~lG~-~~----A~~~l~~~~~~~g~~~~~~l~~~lal~-~--------  237 (410)
T TIGR02270       177 -----RLSESTLRLYLRDSDPEVRFAALEAGLLAGS-RL----AWGVCRRFQVLEGGPHRQRLLVLLAVA-G--------  237 (410)
T ss_pred             -----ccchHHHHHHHcCCCHHHHHHHHHHHHHcCC-Hh----HHHHHHHHHhccCccHHHHHHHHHHhC-C--------
Confidence                 2346778888999999999999999977643 11    113333323222222222222233222 1        


Q ss_pred             hhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhccCCCHHHHHHHHHHHHHhcCCCcchH
Q 044999          336 RNSGAIPILVNLLRGENDEVREKVSGAIAQLSYNEADRVALADAGAVPIMIELLHDESEELRDNAAESLINFSEDPLQHE  415 (461)
Q Consensus       336 ~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~  415 (461)
                       ....++.|..+++++.  ++..++.+++.+-...          .++.|+..+.  ++.++..|.+++..++.-+-...
T Consensus       238 -~~~a~~~L~~ll~d~~--vr~~a~~AlG~lg~p~----------av~~L~~~l~--d~~~aR~A~eA~~~ItG~~l~~~  302 (410)
T TIGR02270       238 -GPDAQAWLRELLQAAA--TRREALRAVGLVGDVE----------AAPWCLEAMR--EPPWARLAGEAFSLITGMDVALE  302 (410)
T ss_pred             -chhHHHHHHHHhcChh--hHHHHHHHHHHcCCcc----------hHHHHHHHhc--CcHHHHHHHHHHHHhhCCCcchh
Confidence             1256778888888754  8999999998776432          4888999884  44499999999999987664443


Q ss_pred             HH
Q 044999          416 RI  417 (461)
Q Consensus       416 ~l  417 (461)
                      .+
T Consensus       303 ~l  304 (410)
T TIGR02270       303 EL  304 (410)
T ss_pred             hh
Confidence            33

Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.

>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]

Probab=98.62  E-value=6.2e-05  Score=74.62  Aligned_cols=435  Identities=13%  Similarity=0.081  Sum_probs=230.2

Q ss_pred             HHHhHHHHHHHhhcCCHHHHHHHHHHHHhhcCCCchhHHHh---------------------------------------
Q 044999            8 WEEAFNRFEQAVVSGSEALQVKALTKLARVSKFAPQDILAA---------------------------------------   48 (461)
Q Consensus         8 ~~~~~~~l~~ll~~~~~~~~~~a~~~l~~la~~~~~~~l~~---------------------------------------   48 (461)
                      -.+.+..+++++++.+.+|+..|.++++-|++.-...++..                                       
T Consensus        45 e~kvv~~lLklL~D~ngEVQnlAVKClg~lvsKvke~~le~~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~~~~~l  124 (1233)
T KOG1824|consen   45 ERKVVKMLLKLLEDKNGEVQNLAVKCLGPLVSKVKEDQLETIVENLCSNMLSGKEQLRDISSIGLKTVIANLPPSSSSFL  124 (1233)
T ss_pred             hhHHHHHHHHHHhccCcHHHHHHHHHHHHHHhhchHHHHHHHHHHHhhhhccchhhhccHHHHHHHHHHhcCCCcccccc
Confidence            34566888999999999999999999985441111111111                                       


Q ss_pred             -------hHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHhcCCCCCHHHHHHHHHHH
Q 044999           49 -------TIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQADGALATEIGQSGVINSVLRLFPQSDDSFRTVLVKCL  121 (461)
Q Consensus        49 -------~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l  121 (461)
                             ..|.+.+.+..    .++...++..++..+.-+-.. ..+.-.. +..+.+..++--+.+....+++.+..++
T Consensus       125 a~tV~~~~t~~l~~~i~~----qe~~sai~~e~lDil~d~lsr-~g~ll~~-fh~~il~~l~~ql~s~R~aVrKkai~~l  198 (1233)
T KOG1824|consen  125 AATVCKRITPKLKQAISK----QEDVSAIKCEVLDILADVLSR-FGTLLPN-FHLSILKCLLPQLQSPRLAVRKKAITAL  198 (1233)
T ss_pred             ccHHHHHHHHHHHHHhhh----cccchhhHHHHHHHHHHHHHh-hcccCcc-hHHHHHHHHhhcccChHHHHHHHHHHHH
Confidence                   22222222222    222222333333333333331 0000000 2334455566667788888999999999


Q ss_pred             HHHhccChhhHHHHHHcCCHHHHHHHhcCC-ChHHHHHHHHHHHHhhCChHHHHHHHhcCCHHHHHHHH---cCCCHHHH
Q 044999          122 RVFVTFGNENRVIVARNGGLEIVIDLLNSC-NDGTRRYLLEILSALALLREVRRVLICLGGLRYLVEAV---SFGSMVSR  197 (461)
Q Consensus       122 ~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~~l---~~~~~~~~  197 (461)
                      ..++....  +..+  .+.++.+.+-|... .+.....-+.+|..++.....|..-.-...++.+.++.   +.+++++|
T Consensus       199 ~~la~~~~--~~ly--~~li~~Ll~~L~~~~q~~~~rt~Iq~l~~i~r~ag~r~~~h~~~ivp~v~~y~~~~e~~dDELr  274 (1233)
T KOG1824|consen  199 GHLASSCN--RDLY--VELIEHLLKGLSNRTQMSATRTYIQCLAAICRQAGHRFGSHLDKIVPLVADYCNKIEEDDDELR  274 (1233)
T ss_pred             HHHHHhcC--HHHH--HHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHhcchhhcccchhhHHHHHHhcccccCcHHHH
Confidence            98885331  2222  22355566655443 44555666677777774333332222234788888888   66788999


Q ss_pred             HHHHHHHHHhhcCchhHHHHHhcCChHHHHHhccc----------------------------------CCHHHHHHHHH
Q 044999          198 ERACQAIGLLAVTGRARRLLVELGVIPGLVELFHI----------------------------------GDWTTKLVAGN  243 (461)
Q Consensus       198 ~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~----------------------------------~~~~~~~~a~~  243 (461)
                      +.++.++..+....+..-.-+...++..+++.+..                                  -++.+|+.|+.
T Consensus       275 E~~lQale~fl~rcp~ei~p~~pei~~l~l~yisYDPNy~yd~~eDed~~~~ed~eDde~~deYsDDeD~SWkVRRaAaK  354 (1233)
T KOG1824|consen  275 EYCLQALESFLRRCPKEILPHVPEIINLCLSYISYDPNYNYDTEEDEDAMFLEDEEDDEQDDEYSDDEDMSWKVRRAAAK  354 (1233)
T ss_pred             HHHHHHHHHHHHhChhhhcccchHHHHHHHHHhccCCCCCCCCccchhhhhhhccccchhccccccccchhHHHHHHHHH
Confidence            99999998876554331111112233334433320                                  02468889999


Q ss_pred             HHHHHhcC-ccchhhhhhcCCHHHHHHHhCCCChhHHHHHHHHHHHh----c---------------cCcccHHHHH---
Q 044999          244 TLGVVAAH-VEYITPVAEAGAIPLYAELLQGPDSTGKEISEDVFCIL----A---------------VSEANANAIA---  300 (461)
Q Consensus       244 ~L~~l~~~-~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l----~---------------~~~~~~~~i~---  300 (461)
                      ++..+... .+.-..+.. ..-|.++.-++..++.++.-...+...+    .               ..+.+...+.   
T Consensus       355 cl~a~IsSR~E~L~~~~q-~l~p~lI~RfkEREEnVk~dvf~~yi~ll~qt~~~~~~~~d~d~~e~~g~~s~~~~L~~~~  433 (1233)
T KOG1824|consen  355 CLEAVISSRLEMLPDFYQ-TLGPALISRFKEREENVKADVFHAYIALLKQTRPVIEVLADNDAMEQGGTPSDLSMLSDQV  433 (1233)
T ss_pred             HHHHHHhccHHHHHHHHH-HhCHHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCCcccccCchhhhccCCccchHHHHhhh
Confidence            99887654 333333322 2236777777766555554443333222    0               0111112222   


Q ss_pred             ----HHHHHHhccCCHHHHHHHHHHHHHhhCC-CCchhHHhhcCCHHHHHHhhcCCC--HHHHHHHHHHHHHhcC-Chhh
Q 044999          301 ----EHLVRILREGDNEANAAAADVLWDLAGY-KHSVPVIRNSGAIPILVNLLRGEN--DEVREKVSGAIAQLSY-NEAD  372 (461)
Q Consensus       301 ----~~l~~ll~~~~~~~~~~a~~~L~~l~~~-~~~~~~l~~~g~i~~L~~ll~~~~--~~v~~~a~~~L~~l~~-~~~~  372 (461)
                          ..+-+.+++.+...+..+...|..+... |..... .....+|.+...+.+.+  ...+..++..+.+.-. ++..
T Consensus       434 ~~iVkai~~qlr~ks~kt~~~cf~lL~eli~~lp~~l~~-~~~slvpgI~~~l~DkSsss~~ki~~L~fl~~~L~s~~p~  512 (1233)
T KOG1824|consen  434 PLIVKAIQKQLREKSVKTRQGCFLLLTELINVLPGALAQ-HIPSLVPGIIYSLNDKSSSSNLKIDALVFLYSALISHPPE  512 (1233)
T ss_pred             HHHHHHHHHHHhhccccchhhHHHHHHHHHHhCcchhhh-cccccchhhhhhcCCccchHHHHHHHHHHHHHHHhcCChh
Confidence                4455556666666777777777777743 333222 22346788888887654  4466666665555443 2221


Q ss_pred             HHHHHhCCChHHHHHhccCCCHHHHHHHHHHHHHhcCC--CcchHHHHHhhCCchHHhHHHHHHHhhh--chhHHHHHHH
Q 044999          373 RVALADAGAVPIMIELLHDESEELRDNAAESLINFSED--PLQHERISEAIGIPSFQSMQSRLTRIRA--SDDLMARSMR  448 (461)
Q Consensus       373 ~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~--~~~~~~l~~~~~~~~~~~l~~~l~~~~~--~~~~~~~~~~  448 (461)
                      ...-...-..+.+.-...++-..+...|......++..  |-..  =...++.+.+..+.....+.-.  ..|..||++|
T Consensus       513 ~fhp~~~~Ls~~v~~aV~d~fyKisaEAL~v~~~lvkvirpl~~--~~~~d~~~~v~~m~~~tl~rL~a~d~DqeVkera  590 (1233)
T KOG1824|consen  513 VFHPHLSALSPPVVAAVGDPFYKISAEALLVCQQLVKVIRPLQP--PSSFDASPYVKTMYDCTLQRLKATDSDQEVKERA  590 (1233)
T ss_pred             hcccchhhhhhHHHHHhcCchHhhhHHHHHHHHHHHHHhcccCC--CccCCCChhHHHHHHHHHHHHhcccccHHHHHHH
Confidence            11111112244444455566677777777666666432  1111  0023344445554443322111  1477799998


Q ss_pred             HHhHhhhc
Q 044999          449 RMSIEQLT  456 (461)
Q Consensus       449 ~~~~~~~~  456 (461)
                      ...+.++.
T Consensus       591 Iscmgq~i  598 (1233)
T KOG1824|consen  591 ISCMGQII  598 (1233)
T ss_pred             HHHHHHHH
Confidence            88887763

>COG5369 Uncharacterized conserved protein [Function unknown]

Probab=98.56  E-value=5.5e-07  Score=83.21  Aligned_cols=291  Identities=15%  Similarity=0.086  Sum_probs=194.1

Q ss_pred             HHHHHHHHHhh-CChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCchh-HHHHHhcCChHHHHHhcccCC
Q 044999          157 RYLLEILSALA-LLREVRRVLICLGGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRA-RRLLVELGVIPGLVELFHIGD  234 (461)
Q Consensus       157 ~~a~~~L~~l~-~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~-~~~~~~~~~i~~L~~ll~~~~  234 (461)
                      ..++..|..++ .-.-.|..+.+..+.+.|+++|+.++..+...+...++|+.-.-.+ +..|.+.|++..++.++.+.+
T Consensus       407 ~a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKD  486 (743)
T COG5369         407 VAIVLFLKSMSRSVTFLRTGLLDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKD  486 (743)
T ss_pred             HHHHHHHHHhhHHHHHHHhhccccchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcch
Confidence            44556666777 3455577888889999999999988777777888888888877777 899999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhcC--ccchhhhhhcCCHHHHHHHhCCCChhHHHHHHHHHHHhccCc----ccH---------HHH
Q 044999          235 WTTKLVAGNTLGVVAAH--VEYITPVAEAGAIPLYAELLQGPDSTGKEISEDVFCILAVSE----ANA---------NAI  299 (461)
Q Consensus       235 ~~~~~~a~~~L~~l~~~--~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~----~~~---------~~i  299 (461)
                      ...|....|.++.+..+  .+.+-.+...-++..++++.+++...++..+...|.|+..+.    +.+         ..+
T Consensus       487 daLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~yl  566 (743)
T COG5369         487 DALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRYL  566 (743)
T ss_pred             hhhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEecChHHHH
Confidence            99999999999999887  333444555556999999999999999999999999996522    121         122


Q ss_pred             HHHHHHHhccCCHHHHHHHHHHHHHhhCCCCchhHHhh--cCCHHHHHHhhc----C-----C--CHHHHHHHHHHHHHh
Q 044999          300 AEHLVRILREGDNEANAAAADVLWDLAGYKHSVPVIRN--SGAIPILVNLLR----G-----E--NDEVREKVSGAIAQL  366 (461)
Q Consensus       300 ~~~l~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~--~g~i~~L~~ll~----~-----~--~~~v~~~a~~~L~~l  366 (461)
                      .+.+++.+...+|-.....+.+|.+++..++....++.  ...+..+.+++.    .     +  ...+...-.....++
T Consensus       567 fk~l~~k~e~~np~~i~~~~yilv~~aa~d~~l~~~V~~q~~~L~~i~eil~e~a~r~~L~pg~~~~~v~~p~s~~~v~l  646 (743)
T COG5369         567 FKRLIDKYEENNPMEILEGCYILVRNAACDDTLDYIVQSQEDMLDSIFEILDEFAGRTPLSPGSKEEHVLLPISYTIVNL  646 (743)
T ss_pred             HHHHHHHHHhcCchhhhhhHHHHHHHHhccchHHHHHHhHHHHHHHHHHHHHHHcccCCCCCCCCcccccCccceeeecc
Confidence            38888888888888777889999999977777666552  233433333332    1     1  011212222233333


Q ss_pred             cCC-hhhHHHHHhCCChHHHHHh---ccCCCHHHHHHHHHHHHHhcCCCcch---------HHHHHhhCCchHHhHHHHH
Q 044999          367 SYN-EADRVALADAGAVPIMIEL---LHDESEELRDNAAESLINFSEDPLQH---------ERISEAIGIPSFQSMQSRL  433 (461)
Q Consensus       367 ~~~-~~~~~~~~~~~~i~~L~~l---l~~~~~~~~~~a~~~L~~l~~~~~~~---------~~l~~~~~~~~~~~l~~~l  433 (461)
                      ..+ ......+.-.   |.+-.+   -.+++.+.-.+..|.+.|+.+...+.         ..+....|.+....+.+  
T Consensus       647 ~e~~d~f~r~~~~~---p~~D~~~~d~~~~NdE~~~agiw~~in~~w~~~~~~vtratveR~~iL~~~G~~e~l~k~q--  721 (743)
T COG5369         647 SENSDKFKRLVLTT---PHLDNMKKDSTTRNDELSIAGIWIIINLSWKEDGSEVTRATVERIQILCANGIREWLVKIQ--  721 (743)
T ss_pred             cccccccccceecC---CCccccccccCCCchhhhhccceEEEecccCccCCccchhhHHHHHHHHHccHHHHHHHHh--
Confidence            331 1111111100   111111   12357778888899999987665442         22333334443333322  


Q ss_pred             HHhhhchhHHHHHHHHHhHhhhc
Q 044999          434 TRIRASDDLMARSMRRMSIEQLT  456 (461)
Q Consensus       434 ~~~~~~~~~~~~~~~~~~~~~~~  456 (461)
                          ..++..+++.++.+++++-
T Consensus       722 ----~~~Sl~vrek~~taL~~l~  740 (743)
T COG5369         722 ----AKDSLIVREKIGTALENLR  740 (743)
T ss_pred             ----ccCcHHHHHHHHHHHHhhh
Confidence                3346789999999998863

>COG5369 Uncharacterized conserved protein [Function unknown]

Probab=98.56  E-value=3.2e-06  Score=78.32  Aligned_cols=284  Identities=12%  Similarity=0.030  Sum_probs=193.0

Q ss_pred             HHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHhh-CChHHHHHHHhcCCHHHHHHHHcCCCH
Q 044999          116 VLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLNSCNDGTRRYLLEILSALA-LLREVRRVLICLGGLRYLVEAVSFGSM  194 (461)
Q Consensus       116 ~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~-~~~~~~~~~~~~~~l~~l~~~l~~~~~  194 (461)
                      .++.++..++.+-...|..+.+..+.+.|+++|++++..+...+...++|.. .....+..+++.|++..++..+.+.+.
T Consensus       408 a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKDd  487 (743)
T COG5369         408 AIVLFLKSMSRSVTFLRTGLLDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKDD  487 (743)
T ss_pred             HHHHHHHHhhHHHHHHHhhccccchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcchh
Confidence            3444555777777777888889999999999999988888888889999988 778889999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhcCchh--HHHHHhcCChHHHHHhcccCCHHHHHHHHHHHHHHhcC----ccchhhhhhcC----CH
Q 044999          195 VSRERACQAIGLLAVTGRA--RRLLVELGVIPGLVELFHIGDWTTKLVAGNTLGVVAAH----VEYITPVAEAG----AI  264 (461)
Q Consensus       195 ~~~~~a~~~L~~l~~~~~~--~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~----~~~~~~~~~~g----~i  264 (461)
                      .+|....+.++.+..+.+.  +-.+...-++..++++..++...++...+..|+|+..+    ++.+..+.+..    ..
T Consensus       488 aLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~ylf  567 (743)
T COG5369         488 ALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRYLF  567 (743)
T ss_pred             hhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEecChHHHHH
Confidence            9999999999999888776  55667778899999999999999999999999999885    22344333332    23


Q ss_pred             HHHHHHhCCCChhHHHHHHHHHHHhccCcccHHHHH---HHHHHHh--------cc-----CC-H-HHHHHHHHHHHHhh
Q 044999          265 PLYAELLQGPDSTGKEISEDVFCILAVSEANANAIA---EHLVRIL--------RE-----GD-N-EANAAAADVLWDLA  326 (461)
Q Consensus       265 ~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~i~---~~l~~ll--------~~-----~~-~-~~~~~a~~~L~~l~  326 (461)
                      ..|++.+...+|-.-...+..|.+++..++....++   +.++..+        ..     ++ + .+-..-.....++.
T Consensus       568 k~l~~k~e~~np~~i~~~~yilv~~aa~d~~l~~~V~~q~~~L~~i~eil~e~a~r~~L~pg~~~~~v~~p~s~~~v~l~  647 (743)
T COG5369         568 KRLIDKYEENNPMEILEGCYILVRNAACDDTLDYIVQSQEDMLDSIFEILDEFAGRTPLSPGSKEEHVLLPISYTIVNLS  647 (743)
T ss_pred             HHHHHHHHhcCchhhhhhHHHHHHHHhccchHHHHHHhHHHHHHHHHHHHHHHcccCCCCCCCCcccccCccceeeeccc
Confidence            445666666666655666888888877777766655   2222211        11     00 0 00000011111111


Q ss_pred             CCCCchhHHhhcCCHHHHHHh------hc----CCCHHHHHHHHHHHHHhcCChh----------hHHHHHhCCChHHHH
Q 044999          327 GYKHSVPVIRNSGAIPILVNL------LR----GENDEVREKVSGAIAQLSYNEA----------DRVALADAGAVPIMI  386 (461)
Q Consensus       327 ~~~~~~~~l~~~g~i~~L~~l------l~----~~~~~v~~~a~~~L~~l~~~~~----------~~~~~~~~~~i~~L~  386 (461)
                      .+         .|....++..      ..    +.+.+...+..|.+.|+.-.+.          -...+.+.|.-+.|.
T Consensus       648 e~---------~d~f~r~~~~~p~~D~~~~d~~~~NdE~~~agiw~~in~~w~~~~~~vtratveR~~iL~~~G~~e~l~  718 (743)
T COG5369         648 EN---------SDKFKRLVLTTPHLDNMKKDSTTRNDELSIAGIWIIINLSWKEDGSEVTRATVERIQILCANGIREWLV  718 (743)
T ss_pred             cc---------ccccccceecCCCccccccccCCCchhhhhccceEEEecccCccCCccchhhHHHHHHHHHccHHHHHH
Confidence            11         1222222221      11    2345566677777777655222          123445556555555


Q ss_pred             HhccCCCHHHHHHHHHHHHHhc
Q 044999          387 ELLHDESEELRDNAAESLINFS  408 (461)
Q Consensus       387 ~ll~~~~~~~~~~a~~~L~~l~  408 (461)
                      .+..+.++.+++.+-.+|.++-
T Consensus       719 k~q~~~Sl~vrek~~taL~~l~  740 (743)
T COG5369         719 KIQAKDSLIVREKIGTALENLR  740 (743)
T ss_pred             HHhccCcHHHHHHHHHHHHhhh
Confidence            5667788899999999998873

>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]

Probab=98.56  E-value=2.6e-06  Score=64.11  Aligned_cols=149  Identities=19%  Similarity=0.201  Sum_probs=115.4

Q ss_pred             HHHHHHh-ccCCHHHHHHHHHHHHHhhCCCCchhHHhhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCChhhHHHHHhC
Q 044999          301 EHLVRIL-REGDNEANAAAADVLWDLAGYKHSVPVIRNSGAIPILVNLLRGENDEVREKVSGAIAQLSYNEADRVALADA  379 (461)
Q Consensus       301 ~~l~~ll-~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~  379 (461)
                      ..|+.-+ ...+.+.++....-|.|++.+|-+-..+.+.++++.++.-+..++..+++.++..|+|+|.++.+++.+.+.
T Consensus        19 q~LV~efq~tt~~eakeqv~ANLANFAYDP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~~n~~~I~ea   98 (173)
T KOG4646|consen   19 QHLVDEFQTTTNIEAKEQVTANLANFAYDPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLDKTNAKFIREA   98 (173)
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHhhccCcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccChHHHHHHHHh
Confidence            4444444 345778888888889999999999999999999999999999999999999999999999999999999999


Q ss_pred             CChHHHHHhccCCCHHHHHHHHHHHHHhcCCCcchHHHHHhhCCchHHhHHHHHHHhhhchhHHHHHHHHHhHhhh
Q 044999          380 GAVPIMIELLHDESEELRDNAAESLINFSEDPLQHERISEAIGIPSFQSMQSRLTRIRASDDLMARSMRRMSIEQL  455 (461)
Q Consensus       380 ~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~  455 (461)
                      +++|.++..+.++...+...++.++..|+...  |....+ .-.+...+.++   +|+.+.+...+-.+...+++.
T Consensus        99 ~g~plii~~lssp~e~tv~sa~~~l~~l~~~~--Rt~r~e-ll~p~Vv~~v~---r~~~s~s~~~rnLa~~fl~~~  168 (173)
T KOG4646|consen   99 LGLPLIIFVLSSPPEITVHSAALFLQLLEFGE--RTERDE-LLSPAVVRTVQ---RWRESKSHDERNLASAFLDKH  168 (173)
T ss_pred             cCCceEEeecCCChHHHHHHHHHHHHHhcCcc--cchhHH-hccHHHHHHHH---HHHHHhhHHHHHHHHHHHHhh
Confidence            99999999999999888888999888887543  222222 23344443333   344444555666666666553

>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.53  E-value=0.00018  Score=69.19  Aligned_cols=228  Identities=11%  Similarity=0.083  Sum_probs=132.7

Q ss_pred             HhHHHHHHHhhcCCHHHHHHHHHHHHhhc--CCC-chhHHHhhHHHHHHhhccCC-------CCCCCcHHHHHHHHHHHH
Q 044999           10 EAFNRFEQAVVSGSEALQVKALTKLARVS--KFA-PQDILAATIPILARLLGENN-------FSGNLTRSIQQAAAYCLK   79 (461)
Q Consensus        10 ~~~~~l~~ll~~~~~~~~~~a~~~l~~la--~~~-~~~~l~~~i~~l~~~l~~~~-------~~~~~~~~~~~~a~~~L~   79 (461)
                      +-..+++++|.+.+..|...+...+-.++  +++ .+..+-.++..|.+......       |-.-+.|..|...++.|.
T Consensus       187 ~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk~~~~~avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq  266 (938)
T KOG1077|consen  187 EWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPESYKTCLPLAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQ  266 (938)
T ss_pred             hHHHHHHHHhCccccceeeehHHHHHHHHHcCCHHHhhhHHHHHHHHHHHHhhcccchhhceeecCCChHHHHHHHHHHH
Confidence            45567777777777777776666666666  222 22222224444444333210       012234566665656655


Q ss_pred             HHHhcCCchhHHHHHhcCCHHHHHhcCC----CCCHH---HHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhcCCC
Q 044999           80 QIASQADGALATEIGQSGVINSVLRLFP----QSDDS---FRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLNSCN  152 (461)
Q Consensus        80 ~l~~~~~~~~~~~~~~~~~l~~L~~ll~----~~~~~---~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~  152 (461)
                      ..=.  +++......-..+++.++...+    +.++.   .+........+++.+-+.....+.+  .+..|.+++.+.+
T Consensus       267 ~~p~--~~D~~~r~~l~evl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~~ll~~--~~~~Lg~fls~rE  342 (938)
T KOG1077|consen  267 IYPT--PEDPSTRARLNEVLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDSEPELLSR--AVNQLGQFLSHRE  342 (938)
T ss_pred             hCCC--CCCchHHHHHHHHHHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHcCCcHHHHHH--HHHHHHHHhhccc
Confidence            5533  2222222222233444444333    12221   1112222222555544444444444  4778888999999


Q ss_pred             hHHHHHHHHHHHHhhCChHHHHHHHhcCCHHHHHHHHc-CCCHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhcc
Q 044999          153 DGTRRYLLEILSALALLREVRRVLICLGGLRYLVEAVS-FGSMVSRERACQAIGLLAVTGRARRLLVELGVIPGLVELFH  231 (461)
Q Consensus       153 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~~l~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~  231 (461)
                      .++|.-|++.++.++..+.....+...  ...++..|+ ..|..+|+.++..|..++.....+.      ++..+++.+.
T Consensus       343 ~NiRYLaLEsm~~L~ss~~s~davK~h--~d~Ii~sLkterDvSirrravDLLY~mcD~~Nak~------IV~elLqYL~  414 (938)
T KOG1077|consen  343 TNIRYLALESMCKLASSEFSIDAVKKH--QDTIINSLKTERDVSIRRRAVDLLYAMCDVSNAKQ------IVAELLQYLE  414 (938)
T ss_pred             ccchhhhHHHHHHHHhccchHHHHHHH--HHHHHHHhccccchHHHHHHHHHHHHHhchhhHHH------HHHHHHHHHh
Confidence            999999999999999776666665554  777888888 5588999999999999987665443      3566777777


Q ss_pred             cCCHHHHHHHHHHHHHHh
Q 044999          232 IGDWTTKLVAGNTLGVVA  249 (461)
Q Consensus       232 ~~~~~~~~~a~~~L~~l~  249 (461)
                      +.+..+++..+.=..-|+
T Consensus       415 tAd~sireeivlKvAILa  432 (938)
T KOG1077|consen  415 TADYSIREEIVLKVAILA  432 (938)
T ss_pred             hcchHHHHHHHHHHHHHH
Confidence            778777776544444444

>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]

Probab=98.47  E-value=3.2e-06  Score=63.66  Aligned_cols=132  Identities=12%  Similarity=0.016  Sum_probs=111.5

Q ss_pred             CHHHHHH-HhcCCChHHHHHHHHHHHHhhCChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCchhHHHHH
Q 044999          140 GLEIVID-LLNSCNDGTRRYLLEILSALALLREVRRVLICLGGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRARRLLV  218 (461)
Q Consensus       140 ~i~~L~~-ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~  218 (461)
                      .+..|+. +-...+.+.++....-|.|++-++-+-..+.+.+++..++..+..+++.+.+.+++.|+|+|....+.+.+.
T Consensus        17 Ylq~LV~efq~tt~~eakeqv~ANLANFAYDP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~~n~~~I~   96 (173)
T KOG4646|consen   17 YLQHLVDEFQTTTNIEAKEQVTANLANFAYDPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLDKTNAKFIR   96 (173)
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHhhccCcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccChHHHHHHH
Confidence            3444554 334567788899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCChHHHHHhcccCCHHHHHHHHHHHHHHhcC-ccchhhhhhcCCHHHHHHHh
Q 044999          219 ELGVIPGLVELFHIGDWTTKLVAGNTLGVVAAH-VEYITPVAEAGAIPLYAELL  271 (461)
Q Consensus       219 ~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~g~i~~L~~ll  271 (461)
                      +.++++.++..+.++...+...++.++..++.. ...+..+....++..+..+-
T Consensus        97 ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt~r~ell~p~Vv~~v~r~~  150 (173)
T KOG4646|consen   97 EALGLPLIIFVLSSPPEITVHSAALFLQLLEFGERTERDELLSPAVVRTVQRWR  150 (173)
T ss_pred             HhcCCceEEeecCCChHHHHHHHHHHHHHhcCcccchhHHhccHHHHHHHHHHH
Confidence            999999999999999999999999999999887 55666665555555555444

>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]

Probab=98.46  E-value=0.00061  Score=68.65  Aligned_cols=314  Identities=16%  Similarity=0.207  Sum_probs=203.5

Q ss_pred             HHHHHHHHHHhhc--CCCchhHHHh------hHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHhcCCchhHHHHHhcC
Q 044999           26 LQVKALTKLARVS--KFAPQDILAA------TIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQADGALATEIGQSG   97 (461)
Q Consensus        26 ~~~~a~~~l~~la--~~~~~~~l~~------~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~   97 (461)
                      -...+..+|.|+.  ++.....+..      -++.+..++..    . .++.+|..|...+..+..  +.++-..+...|
T Consensus      1741 ~v~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~----~-~~~~iq~LaL~Vi~~~Ta--n~~Cv~~~a~~~ 1813 (2235)
T KOG1789|consen 1741 KVLMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRC----R-KHPKLQILALQVILLATA--NKECVTDLATCN 1813 (2235)
T ss_pred             HHHHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHH----c-CCchHHHHHHHHHHHHhc--ccHHHHHHHhhh
Confidence            4566888888888  6644433322      56677777875    3 456789999999988888  888999999999


Q ss_pred             CHHHHHhcCCCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhc-CCChHHHHHHHHHHHHhhCCh----HH
Q 044999           98 VINSVLRLFPQSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLN-SCNDGTRRYLLEILSALALLR----EV  172 (461)
Q Consensus        98 ~l~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~----~~  172 (461)
                      .+..|+.+|.+. |..+..+...++.+++.. +.-....+.|++..+..++. +..+..|..|...+.++..++    ..
T Consensus      1814 vL~~LL~lLHS~-PS~R~~vL~vLYAL~S~~-~i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV 1891 (2235)
T KOG1789|consen 1814 VLTTLLTLLHSQ-PSMRARVLDVLYALSSNG-QIGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRV 1891 (2235)
T ss_pred             HHHHHHHHHhcC-hHHHHHHHHHHHHHhcCc-HHHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCce
Confidence            999999998764 455889999999999544 66666677888888887665 445688889999999887433    11


Q ss_pred             HH-----------HHHhcCCHHHHHHHHcCC--CHH------HHHHHHHHHHHhh--------cCch-------------
Q 044999          173 RR-----------VLICLGGLRYLVEAVSFG--SMV------SRERACQAIGLLA--------VTGR-------------  212 (461)
Q Consensus       173 ~~-----------~~~~~~~l~~l~~~l~~~--~~~------~~~~a~~~L~~l~--------~~~~-------------  212 (461)
                      +.           ..++ ++-+..+..+...  +++      .+......+..+.        .++.             
T Consensus      1892 ~ITL~kFLP~~f~d~~R-D~PEAaVH~fE~T~EnPELiWn~~~r~kvS~~i~tM~~~~y~~QQk~p~~~W~~PEqsAg~~ 1970 (2235)
T KOG1789|consen 1892 TITLIKFLPEIFADSLR-DSPEAAVHMFESTSENPELIWNEVTRQKVSGIIDTMVGKLYEQQQKDPTVKWNTPEQSAGTS 1970 (2235)
T ss_pred             eeehHHhchHHHHHHHh-cCHHHHHHHHhccCCCcccccCHhHHHHHHHHHHHHHHHHHHHhccCCcccccCchhhcchh
Confidence            11           1111 1224455555432  222      2222222222222        1110             


Q ss_pred             -----------h-HHHHHhc------------CChHHHHHhcccCCH--HHHHHHHHHHHHHhc-CccchhhhhhcCCHH
Q 044999          213 -----------A-RRLLVEL------------GVIPGLVELFHIGDW--TTKLVAGNTLGVVAA-HVEYITPVAEAGAIP  265 (461)
Q Consensus       213 -----------~-~~~~~~~------------~~i~~L~~ll~~~~~--~~~~~a~~~L~~l~~-~~~~~~~~~~~g~i~  265 (461)
                                 . +..+.+.            +.++.+.+++...++  .....-..++..|-. ++.....+-..|-+|
T Consensus      1971 Ea~~E~aVGG~~~R~Fi~~P~f~LR~Pk~FL~~LLek~lelm~~~~peqh~l~lLt~A~V~L~r~hP~LADqip~LGylP 2050 (2235)
T KOG1789|consen 1971 EADKECAVGGSINREFVVGPGFNLRHPKLFLTELLEKVLELMSRPTPEQHELDLLTKAFVELVRHHPNLADQLPSLGYLP 2050 (2235)
T ss_pred             hhccCcccchhhhHHHhhCCCCcccCHHHHHHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHhCcchhhhCCCccchH
Confidence                       0 1112221            234445555553332  222222334444433 477777777789999


Q ss_pred             HHHHHhCCCChhHHHHHHHHHHHhccCcccHHHHH-----HHHHHHhccCCHHHHHHHHHHHHHhhCC--CCchhHHhhc
Q 044999          266 LYAELLQGPDSTGKEISEDVFCILAVSEANANAIA-----EHLVRILREGDNEANAAAADVLWDLAGY--KHSVPVIRNS  338 (461)
Q Consensus       266 ~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~i~-----~~l~~ll~~~~~~~~~~a~~~L~~l~~~--~~~~~~l~~~  338 (461)
                      .++..+...+..+-..|++.|..|+.+.-+...+.     ..+++.+...- ...-.|+.+|..+...  .+...+..+.
T Consensus      2051 K~~~Am~~~n~s~P~SaiRVlH~Lsen~~C~~AMA~l~~i~~~m~~mkK~~-~~~GLA~EalkR~~~r~~~eLVAQ~LK~ 2129 (2235)
T KOG1789|consen 2051 KFCTAMCLQNTSAPRSAIRVLHELSENQFCCDAMAQLPCIDGIMKSMKKQP-SLMGLAAEALKRLMKRNTGELVAQMLKC 2129 (2235)
T ss_pred             HHHHHHHhcCCcCcHHHHHHHHHHhhccHHHHHHhccccchhhHHHHHhcc-hHHHHHHHHHHHHHHHhHHHHHHHHhcc
Confidence            99999987777777899999999999988888887     55666664432 2333788888887742  3445566789


Q ss_pred             CCHHHHHHhhcC
Q 044999          339 GAIPILVNLLRG  350 (461)
Q Consensus       339 g~i~~L~~ll~~  350 (461)
                      |.+|.|+++|..
T Consensus      2130 gLvpyLL~LLd~ 2141 (2235)
T KOG1789|consen 2130 GLVPYLLQLLDS 2141 (2235)
T ss_pred             CcHHHHHHHhcc
Confidence            999999999974

>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]

Probab=98.44  E-value=5.1e-06  Score=78.26  Aligned_cols=258  Identities=12%  Similarity=0.158  Sum_probs=169.1

Q ss_pred             CHHHHHhcCCCCCHHHHHHHHHHHHHHhccCh--hhHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHhhCChHHHHH
Q 044999           98 VINSVLRLFPQSDDSFRTVLVKCLRVFVTFGN--ENRVIVARNGGLEIVIDLLNSCNDGTRRYLLEILSALALLREVRRV  175 (461)
Q Consensus        98 ~l~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~--~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~  175 (461)
                      .+..++++|++..+.++..++..+..++.--.  .--..+...|  ..|.+-++...+++.-..+.+++.+......+..
T Consensus       605 ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg--~iLyE~lge~ypEvLgsil~Ai~~I~sv~~~~~m  682 (975)
T COG5181         605 IVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLG--NILYENLGEDYPEVLGSILKAICSIYSVHRFRSM  682 (975)
T ss_pred             HHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHh--HHHHHhcCcccHHHHHHHHHHHHHHhhhhccccc
Confidence            35667789999999999999988886664211  1123333333  2466777888888877777777766533222210


Q ss_pred             -HHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCchh----HHHHHhcCChHHHHHhcccCCHHHHHHHHHHHHHHhc
Q 044999          176 -LICLGGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRA----RRLLVELGVIPGLVELFHIGDWTTKLVAGNTLGVVAA  250 (461)
Q Consensus       176 -~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~----~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~  250 (461)
                       =--.|++|.+..+|.+....++......++.++...+.    ++.|.   +--.|+++|++-+.++++.|..+++.++.
T Consensus       683 qpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMR---IcfeLvd~Lks~nKeiRR~A~~tfG~Is~  759 (975)
T COG5181         683 QPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMR---ICFELVDSLKSWNKEIRRNATETFGCISR  759 (975)
T ss_pred             CCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHH---HHHHHHHHHHHhhHHHHHhhhhhhhhHHh
Confidence             01247899999999999999999999999999887764    33332   23457788888999999999999999986


Q ss_pred             CccchhhhhhcCCHHHHHHHhCCCChhHHHHHHHHHHHhccCcccHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhCC--
Q 044999          251 HVEYITPVAEAGAIPLYAELLQGPDSTGKEISEDVFCILAVSEANANAIAEHLVRILREGDNEANAAAADVLWDLAGY--  328 (461)
Q Consensus       251 ~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~l~~ll~~~~~~~~~~a~~~L~~l~~~--  328 (461)
                      .      +..+.++..|++-|+..+...|....-++.-.+... ..-.+.|.++.=-.++...++...+++++.+-..  
T Consensus       760 a------iGPqdvL~~LlnnLkvqeRq~RvctsvaI~iVae~c-gpfsVlP~lm~dY~TPe~nVQnGvLkam~fmFeyig  832 (975)
T COG5181         760 A------IGPQDVLDILLNNLKVQERQQRVCTSVAISIVAEYC-GPFSVLPTLMSDYETPEANVQNGVLKAMCFMFEYIG  832 (975)
T ss_pred             h------cCHHHHHHHHHhcchHHHHHhhhhhhhhhhhhHhhc-CchhhHHHHHhcccCchhHHHHhHHHHHHHHHHHHH
Confidence            3      222334556666665554444443333332222111 0011125555555566677888888887777643  


Q ss_pred             CCchhHHhhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCC
Q 044999          329 KHSVPVIRNSGAIPILVNLLRGENDEVREKVSGAIAQLSYN  369 (461)
Q Consensus       329 ~~~~~~l~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~  369 (461)
                      ...++.+.  -..|.|-+.+.+.++.-+..|...+..|+.+
T Consensus       833 ~~s~dYvy--~itPlleDAltDrD~vhRqta~nvI~Hl~Ln  871 (975)
T COG5181         833 QASLDYVY--SITPLLEDALTDRDPVHRQTAMNVIRHLVLN  871 (975)
T ss_pred             HHHHHHHH--HhhHHHHhhhcccchHHHHHHHHHHHHHhcC
Confidence            23333333  3678888888999999999999999999884

>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]

Probab=98.38  E-value=8.8e-05  Score=74.26  Aligned_cols=380  Identities=14%  Similarity=0.140  Sum_probs=252.6

Q ss_pred             HHHhHHHHHHHhhcCCHHHHHHHHHHHHhhc-CCCchhHHHh-hHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHhcC
Q 044999            8 WEEAFNRFEQAVVSGSEALQVKALTKLARVS-KFAPQDILAA-TIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQA   85 (461)
Q Consensus         8 ~~~~~~~l~~ll~~~~~~~~~~a~~~l~~la-~~~~~~~l~~-~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~   85 (461)
                      +...++.+.++..++...||..|...+..+. .-.......+ ..+.+++....    ++.  .+..........+... 
T Consensus       274 ~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~~~~d~~~~~~~~l~~~~~d----~~~--~v~~~~~~~~~~L~~~-  346 (759)
T KOG0211|consen  274 KSEVLPTLIQLLRDDQDSVREAAVESLVSLLDLLDDDDDVVKSLTESLVQAVED----GSW--RVSYMVADKFSELSSA-  346 (759)
T ss_pred             HhhccHHHhhhhhcchhhHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHhcC----hhH--HHHHHHhhhhhhHHHH-
Confidence            5566788899999999999999999998888 2111113333 77777777764    221  2222244444444431 


Q ss_pred             CchhHHHHHhcCCHHHHHhcCCCCCHHHHHHHHHHHHHHhc-cChhhHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHH
Q 044999           86 DGALATEIGQSGVINSVLRLFPQSDDSFRTVLVKCLRVFVT-FGNENRVIVARNGGLEIVIDLLNSCNDGTRRYLLEILS  164 (461)
Q Consensus        86 ~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~l~~-~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~  164 (461)
                       -+  .......-.+....++++...+++...+.-...++. .+.++...+.....++.+..+..+.+..++...+..+.
T Consensus       347 -~~--~~~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~  423 (759)
T KOG0211|consen  347 -VG--PSATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYLNASCYPNIPDSSILPEVQVLVLDNALHVRSALASVIT  423 (759)
T ss_pred             -hc--cccCcccchhhHHHHhcchhhhhhHHhhcchHHHhhhcCcccccccchhhhhHHHHHHHhcccchHHHHHhcccc
Confidence             00  011122335667778888777777777766666665 33345566677777888888888888888888888777


Q ss_pred             Hhh-CChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCchh-HHHHHhcCChHHHHHhcccCCHHHHHHHH
Q 044999          165 ALA-LLREVRRVLICLGGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRA-RRLLVELGVIPGLVELFHIGDWTTKLVAG  242 (461)
Q Consensus       165 ~l~-~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~-~~~~~~~~~i~~L~~ll~~~~~~~~~~a~  242 (461)
                      .+. ..+..  .- -....+.+...+++..+.++......+..+-...+. .........++.+..+-....+.++....
T Consensus       424 ~~~p~~~k~--~t-i~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~~s~slLp~i~el~~d~~wRvr~ail  500 (759)
T KOG0211|consen  424 GLSPILPKE--RT-ISELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGISTVSNSLLPAIVELAEDLLWRVRLAIL  500 (759)
T ss_pred             ccCccCCcC--cC-ccccChhhhhhcchhhHHHHHhhHHHHHHHHhccCcccchhhhhhhhhhhhhhccchhHHHHHHHH
Confidence            776 22210  00 123567777788888889998888877666555554 44555666788888888877888888888


Q ss_pred             HHHHHHhcCccchhhhhhcCCHHHHHHHhCCCChhHHHHHHHHHHHhccCcc---cHHHHHHHHHHHhccCCHHHHHHHH
Q 044999          243 NTLGVVAAHVEYITPVAEAGAIPLYAELLQGPDSTGKEISEDVFCILAVSEA---NANAIAEHLVRILREGDNEANAAAA  319 (461)
Q Consensus       243 ~~L~~l~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~---~~~~i~~~l~~ll~~~~~~~~~~a~  319 (461)
                      ..+..++....  ..+.....-+.+...+.+...++++.|+..+..++..-.   .+..+++.++.+...++.-.|...+
T Consensus       501 ~~ip~la~q~~--~~~~~~~~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~~~G~~w~~~~~i~k~L~~~~q~~y~~R~t~l  578 (759)
T KOG0211|consen  501 EYIPQLALQLG--VEFFDEKLAELLRTWLPDHVYSIREAAARNLPALVETFGSEWARLEEIPKLLAMDLQDNYLVRMTTL  578 (759)
T ss_pred             HHHHHHHHhhh--hHHhhHHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHhCcchhHHHhhHHHHHHhcCcccchhhHHH
Confidence            88877776522  333333344555566666677899999998888854333   3344447777777666677777776


Q ss_pred             HHHHHhhCCCCchhHHhhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcC--ChhhHHHHHhCCChHHHHHhccCCCHHHH
Q 044999          320 DVLWDLAGYKHSVPVIRNSGAIPILVNLLRGENDEVREKVSGAIAQLSY--NEADRVALADAGAVPIMIELLHDESEELR  397 (461)
Q Consensus       320 ~~L~~l~~~~~~~~~l~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~--~~~~~~~~~~~~~i~~L~~ll~~~~~~~~  397 (461)
                      .++..++.-  ....+.....+|.+.++..++.+.||..+++.|..+..  +.    ...+..+.|.+..+-++.+.+++
T Consensus       579 ~si~~la~v--~g~ei~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~~~L~~----~~~~~~v~pll~~L~~d~~~dvr  652 (759)
T KOG0211|consen  579 FSIHELAEV--LGQEITCEDLLPVFLDLVKDPVANVRINVAKHLPKILKLLDE----SVRDEEVLPLLETLSSDQELDVR  652 (759)
T ss_pred             HHHHHHHHH--hccHHHHHHHhHHHHHhccCCchhhhhhHHHHHHHHHhhcch----HHHHHHHHHHHHHhccCcccchh
Confidence            666655431  22334445678999999999999999999999988876  33    33344456777777788888888


Q ss_pred             HHHHHHHHHhc
Q 044999          398 DNAAESLINFS  408 (461)
Q Consensus       398 ~~a~~~L~~l~  408 (461)
                      ..|..+...+.
T Consensus       653 ~~a~~a~~~i~  663 (759)
T KOG0211|consen  653 YRAILAFGSIE  663 (759)
T ss_pred             HHHHHHHHHHH
Confidence            88877776654

>KOG0915 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.38  E-value=5.4e-05  Score=78.67  Aligned_cols=335  Identities=12%  Similarity=0.051  Sum_probs=183.5

Q ss_pred             HHHHHHHhhcCC-HHHHHHHHHHHHhhc-CC--CchhHHHhhHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHhcCCc
Q 044999           12 FNRFEQAVVSGS-EALQVKALTKLARVS-KF--APQDILAATIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQADG   87 (461)
Q Consensus        12 ~~~l~~ll~~~~-~~~~~~a~~~l~~la-~~--~~~~~l~~~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~   87 (461)
                      +=.|+++.++.- =.-|.-|+..++.++ ..  +.+-.+.+.||.|.+.=..      +|+.+|... ..+++.... +.
T Consensus       958 VYKFM~LAnh~A~wnSk~GaAfGf~~i~~~a~~kl~p~l~kLIPrLyRY~yD------P~~~Vq~aM-~sIW~~Li~-D~ 1029 (1702)
T KOG0915|consen  958 VYKFMQLANHNATWNSKKGAAFGFGAIAKQAGEKLEPYLKKLIPRLYRYQYD------PDKKVQDAM-TSIWNALIT-DS 1029 (1702)
T ss_pred             HHHHHHHhhhhchhhcccchhhchHHHHHHHHHhhhhHHHHhhHHHhhhccC------CcHHHHHHH-HHHHHHhcc-Ch
Confidence            334445444432 244566888999999 33  2222334488888887764      556677754 445544442 32


Q ss_pred             hhHHHHHhcCCHHHHHhcCCCCCHHHHHHHHHHHHHHhccChhhH--HHHHHcCCHHHHHHHhcCCChHHH---HHHHHH
Q 044999           88 ALATEIGQSGVINSVLRLFPQSDDSFRTVLVKCLRVFVTFGNENR--VIVARNGGLEIVIDLLNSCNDGTR---RYLLEI  162 (461)
Q Consensus        88 ~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~--~~~~~~g~i~~L~~ll~~~~~~~~---~~a~~~  162 (461)
                      .....-+-...++.|+.-|.+..+.+|..++.++..+....+..+  +.+-  .....+++..++=.+.+|   ..++.+
T Consensus      1030 k~~vd~y~neIl~eLL~~lt~kewRVReasclAL~dLl~g~~~~~~~e~lp--elw~~~fRvmDDIKEsVR~aa~~~~~~ 1107 (1702)
T KOG0915|consen 1030 KKVVDEYLNEILDELLVNLTSKEWRVREASCLALADLLQGRPFDQVKEKLP--ELWEAAFRVMDDIKESVREAADKAARA 1107 (1702)
T ss_pred             HHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHcCCChHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            222222233467778888889999999999999999987543221  1111  123333333333334454   456677


Q ss_pred             HHHhh-CChHHHHHHHhcCCHHHHHHHHc-----CCCHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhcccCCHH
Q 044999          163 LSALA-LLREVRRVLICLGGLRYLVEAVS-----FGSMVSRERACQAIGLLAVTGRARRLLVELGVIPGLVELFHIGDWT  236 (461)
Q Consensus       163 L~~l~-~~~~~~~~~~~~~~l~~l~~~l~-----~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~  236 (461)
                      |..++ .-.+.....-...++..++.+|-     +.-.++|..++.++..++.+.+..-.-.-...++.|+.....-.+.
T Consensus      1108 lsKl~vr~~d~~~~~~~~~~l~~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg~~lkP~~~~LIp~ll~~~s~lE~~ 1187 (1702)
T KOG0915|consen 1108 LSKLCVRICDVTNGAKGKEALDIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGKELKPHFPKLIPLLLNAYSELEPQ 1187 (1702)
T ss_pred             HHHHHhhhcccCCcccHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHhchhhhcchhhHHHHHHHHHccccchH
Confidence            77766 11111000001113333444332     3456999999999999998877632222244678888877755554


Q ss_pred             HHH-HHHHHHHHHhcC--ccchhhhhhc-CCHHHHHHHhCCCChhHHHHHHHHHHHhccCcccHHHHHHHHHHHhccC-C
Q 044999          237 TKL-VAGNTLGVVAAH--VEYITPVAEA-GAIPLYAELLQGPDSTGKEISEDVFCILAVSEANANAIAEHLVRILREG-D  311 (461)
Q Consensus       237 ~~~-~a~~~L~~l~~~--~~~~~~~~~~-g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~l~~ll~~~-~  311 (461)
                      +.- .++++ .+....  +..|....+. -.+..+=.++..-|..+                 -.++.|.+.++++++ .
T Consensus      1188 vLnYls~r~-~~~e~ealDt~R~s~aksspmmeTi~~ci~~iD~~v-----------------Leelip~l~el~R~sVg 1249 (1702)
T KOG0915|consen 1188 VLNYLSLRL-INIETEALDTLRASAAKSSPMMETINKCINYIDISV-----------------LEELIPRLTELVRGSVG 1249 (1702)
T ss_pred             HHHHHHHhh-hhhHHHHHHHHHHhhhcCCcHHHHHHHHHHhhhHHH-----------------HHHHHHHHHHHHhccCC
Confidence            433 33333 222221  2223333222 12223333333333332                 234458888888766 4


Q ss_pred             HHHHHHHHHHHHHhhCC--CCchhHHhhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcC--ChhhHHHH
Q 044999          312 NEANAAAADVLWDLAGY--KHSVPVIRNSGAIPILVNLLRGENDEVREKVSGAIAQLSY--NEADRVAL  376 (461)
Q Consensus       312 ~~~~~~a~~~L~~l~~~--~~~~~~l~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~--~~~~~~~~  376 (461)
                      -..+..++..+..|+..  .+......  ..+..+...+++.++.+++.-..+.+.|+.  .++....+
T Consensus      1250 l~Tkvg~A~fI~~L~~r~~~emtP~sg--Kll~al~~g~~dRNesv~kafAsAmG~L~k~Ss~dq~qKL 1316 (1702)
T KOG0915|consen 1250 LGTKVGCASFISLLVQRLGSEMTPYSG--KLLRALFPGAKDRNESVRKAFASAMGYLAKFSSPDQMQKL 1316 (1702)
T ss_pred             CCcchhHHHHHHHHHHHhccccCcchh--HHHHHHhhccccccHHHHHHHHHHHHHHHhcCChHHHHHH
Confidence            45666777777777631  22222211  245567777788889999998888998888  44433444

>KOG2259 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.34  E-value=2.5e-05  Score=74.35  Aligned_cols=253  Identities=10%  Similarity=0.055  Sum_probs=161.3

Q ss_pred             hHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHhcCCCCCHHHHHHHHHHHHHHhccC
Q 044999           49 TIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQADGALATEIGQSGVINSVLRLFPQSDDSFRTVLVKCLRVFVTFG  128 (461)
Q Consensus        49 ~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~l~~~~  128 (461)
                      +..-+..+...      .|+.+..+|+.+|..|.+. ..-.+ .     .-...++.+++.+.+|+..|...++-+....
T Consensus       199 ~~~~l~~~~~~------~D~~Vrt~A~eglL~L~eg-~kL~~-~-----~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~  265 (823)
T KOG2259|consen  199 AARGLIYLEHD------QDFRVRTHAVEGLLALSEG-FKLSK-A-----CYSRAVKHLSDDYEDVRKAAVQLVSVWGNRC  265 (823)
T ss_pred             HHHHHHHHhcC------CCcchHHHHHHHHHhhccc-ccccH-H-----HHHHHHHHhcchHHHHHHHHHHHHHHHHhcC
Confidence            33445555543      4566777788888888872 22111 1     2466789999999999999988777444321


Q ss_pred             -----hhhHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHhh-CChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHH
Q 044999          129 -----NENRVIVARNGGLEIVIDLLNSCNDGTRRYLLEILSALA-LLREVRRVLICLGGLRYLVEAVSFGSMVSRERACQ  202 (461)
Q Consensus       129 -----~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~-~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~  202 (461)
                           .++...-..-.++..++..+++-+-.+|..|.+.|+.+- ..++...+..+..++..+-+.-..     .+..-.
T Consensus       266 p~~~e~e~~e~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~a-----hkrpk~  340 (823)
T KOG2259|consen  266 PAPLERESEEEKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRTA-----HKRPKA  340 (823)
T ss_pred             CCcccchhhhhhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhhc-----ccchHH
Confidence                 111111122235677888888888889999999998876 334443333333333322111000     000011


Q ss_pred             HHHHh--hc------------CchhHHHHHhcCChHHHHHhcccCCHHHHHHHHHHHHHHhcC-ccchhhhhhcCCHHHH
Q 044999          203 AIGLL--AV------------TGRARRLLVELGVIPGLVELFHIGDWTTKLVAGNTLGVVAAH-VEYITPVAEAGAIPLY  267 (461)
Q Consensus       203 ~L~~l--~~------------~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~g~i~~L  267 (461)
                      ...+-  ++            .+.....+..+|+-..++.-+.++-.+++..|+..++.|+.+ +......     +.-|
T Consensus       341 l~s~GewSsGk~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~FA~~a-----ldfL  415 (823)
T KOG2259|consen  341 LYSSGEWSSGKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPGFAVRA-----LDFL  415 (823)
T ss_pred             HHhcCCcccCccccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCCcHHHH-----HHHH
Confidence            11111  00            111134567788889999999999999999999999999987 5554443     7889


Q ss_pred             HHHhCCCChhHHHHHHHHHHHhccCcccHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 044999          268 AELLQGPDSTGKEISEDVFCILAVSEANANAIAEHLVRILREGDNEANAAAADVLWD  324 (461)
Q Consensus       268 ~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~l~~ll~~~~~~~~~~a~~~L~~  324 (461)
                      +++++++..++|..|..+|..++.+-..++...+.+...|.+.++++|+..-..|++
T Consensus       416 vDMfNDE~~~VRL~ai~aL~~Is~~l~i~eeql~~il~~L~D~s~dvRe~l~elL~~  472 (823)
T KOG2259|consen  416 VDMFNDEIEVVRLKAIFALTMISVHLAIREEQLRQILESLEDRSVDVREALRELLKN  472 (823)
T ss_pred             HHHhccHHHHHHHHHHHHHHHHHHHheecHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence            999999999999999999999988766666666666666666666666555444443

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=98.33  E-value=3e-05  Score=77.50  Aligned_cols=233  Identities=15%  Similarity=0.101  Sum_probs=170.1

Q ss_pred             HHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHhh-CChHHHHHHHhcCCHHHHHHHHcC-C-
Q 044999          116 VLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLNSCNDGTRRYLLEILSALA-LLREVRRVLICLGGLRYLVEAVSF-G-  192 (461)
Q Consensus       116 ~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~-~~~~~~~~~~~~~~l~~l~~~l~~-~-  192 (461)
                      .|...|..+..-.+=.-..-..-|++|..+++|+++..+++-.-+.+..++. .++..+..+++.++-..++.+|.. + 
T Consensus       489 RAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~~~~  568 (1387)
T KOG1517|consen  489 RALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDPSQA  568 (1387)
T ss_pred             HHHHHHHHHhccchhhhhhhhccchHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEecCcCC
Confidence            3444444444444333444557799999999999999999988888888877 788888899999888888888876 3 


Q ss_pred             -CHHHHHHHHHHHHHhhcCchh-HHHHHhcCChHHHHHhcccC-CHHHHHHHHHHHHHHhcC-ccchhhhhhcCCHHHHH
Q 044999          193 -SMVSRERACQAIGLLAVTGRA-RRLLVELGVIPGLVELFHIG-DWTTKLVAGNTLGVVAAH-VEYITPVAEAGAIPLYA  268 (461)
Q Consensus       193 -~~~~~~~a~~~L~~l~~~~~~-~~~~~~~~~i~~L~~ll~~~-~~~~~~~a~~~L~~l~~~-~~~~~~~~~~g~i~~L~  268 (461)
                       +++-|..|+.+|..+..+... ++...+.+.+...+..+.++ .+-.+.+.+-+|+.|-.+ +..|=.=.+.++.+.|.
T Consensus       569 ~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~  648 (1387)
T KOG1517|consen  569 IPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLI  648 (1387)
T ss_pred             CCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHH
Confidence             568899999999999999877 88888889999999999885 688999999999999988 66666666778899999


Q ss_pred             HHhCCCChhHHHHHHHHHHHhccCc----ccHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCchhHHhhcCCHHHH
Q 044999          269 ELLQGPDSTGKEISEDVFCILAVSE----ANANAIAEHLVRILREGDNEANAAAADVLWDLAGYKHSVPVIRNSGAIPIL  344 (461)
Q Consensus       269 ~ll~~~~~~~~~~a~~~L~~l~~~~----~~~~~i~~~l~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L  344 (461)
                      .++.++-++||..|..+|..+..+.    +.+....+..+.                   |-...-..+.++.. +...+
T Consensus       649 ~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~-------------------l~~~~~~~E~~i~~-~~~~l  708 (1387)
T KOG1517|consen  649 LLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEID-------------------LDDERTSIEDLIIK-GLMSL  708 (1387)
T ss_pred             HHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhc-------------------chhhhhhHHHHHHh-hHHHH
Confidence            9999999999999999998884421    111111111111                   10000001111111 11356


Q ss_pred             HHhhcCCCHHHHHHHHHHHHHhcC
Q 044999          345 VNLLRGENDEVREKVSGAIAQLSY  368 (461)
Q Consensus       345 ~~ll~~~~~~v~~~a~~~L~~l~~  368 (461)
                      +.+++++++-++.+...+|..+..
T Consensus       709 l~~vsdgsplvr~ev~v~ls~~~~  732 (1387)
T KOG1517|consen  709 LALVSDGSPLVRTEVVVALSHFVV  732 (1387)
T ss_pred             HHHHhccchHHHHHHHHHHHHHHH
Confidence            677788888888888888887776

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=98.30  E-value=4e-05  Score=76.67  Aligned_cols=219  Identities=15%  Similarity=0.083  Sum_probs=164.0

Q ss_pred             HHHHHHHHHhcCCchhHHHHHhcCCHHHHHhcCCCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhcCC--
Q 044999           74 AAYCLKQIASQADGALATEIGQSGVINSVLRLFPQSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLNSC--  151 (461)
Q Consensus        74 a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~--  151 (461)
                      |+..|.++...|+...- .-..-|+.|..+++|.++-.+.+...+..-..+..-++.++..+++.+|-..++..|..+  
T Consensus       490 AL~LL~RFLDlGpWAV~-LaLsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~~~~  568 (1387)
T KOG1517|consen  490 ALVLLARFLDLGPWAVD-LALSVGIFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDPSQA  568 (1387)
T ss_pred             HHHHHHHHhccchhhhh-hhhccchHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEecCcCC
Confidence            77778877775554432 334678999999999999888666555444454446679999999999999999888762  


Q ss_pred             -ChHHHHHHHHHHHHhh-CChHHHHHHHhcCCHHHHHHHHcCC-CHHHHHHHHHHHHHhhcCchh-HHHHHhcCChHHHH
Q 044999          152 -NDGTRRYLLEILSALA-LLREVRRVLICLGGLRYLVEAVSFG-SMVSRERACQAIGLLAVTGRA-RRLLVELGVIPGLV  227 (461)
Q Consensus       152 -~~~~~~~a~~~L~~l~-~~~~~~~~~~~~~~l~~l~~~l~~~-~~~~~~~a~~~L~~l~~~~~~-~~~~~~~~~i~~L~  227 (461)
                       +++-|..|+.+|+.++ ...-.++...+.+.+...++.+.++ .+-++.+++-+|+.|-.+.+. +..=.+.++.+.|+
T Consensus       569 ~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~  648 (1387)
T KOG1517|consen  569 IPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLI  648 (1387)
T ss_pred             CCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHH
Confidence             3478899999999999 5566677888888899889999886 678999999999999988887 55556688999999


Q ss_pred             HhcccCCHHHHHHHHHHHHHHhcC-----ccchhhh------------hhcCCH---HHHHHHhCCCChhHHHHHHHHHH
Q 044999          228 ELFHIGDWTTKLVAGNTLGVVAAH-----VEYITPV------------AEAGAI---PLYAELLQGPDSTGKEISEDVFC  287 (461)
Q Consensus       228 ~ll~~~~~~~~~~a~~~L~~l~~~-----~~~~~~~------------~~~g~i---~~L~~ll~~~~~~~~~~a~~~L~  287 (461)
                      .++.++-+++|..|+-+|+.+-.+     ++.....            ++.-+.   -.++.++++..+-++.....+|.
T Consensus       649 ~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdgsplvr~ev~v~ls  728 (1387)
T KOG1517|consen  649 LLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDGSPLVRTEVVVALS  728 (1387)
T ss_pred             HHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhccchHHHHHHHHHHH
Confidence            999999999999999999988764     1111111            111111   24555666677777777777777


Q ss_pred             HhccCc
Q 044999          288 ILAVSE  293 (461)
Q Consensus       288 ~l~~~~  293 (461)
                      .++...
T Consensus       729 ~~~~g~  734 (1387)
T KOG1517|consen  729 HFVVGY  734 (1387)
T ss_pred             HHHHhh
Confidence            665443

>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]

Probab=98.29  E-value=0.00034  Score=65.90  Aligned_cols=339  Identities=14%  Similarity=0.065  Sum_probs=163.6

Q ss_pred             CcHHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHhcCCCCCHHHHHH-----HHHHHHHHhccChhhHHHHHHcCC
Q 044999           66 LTRSIQQAAAYCLKQIASQADGALATEIGQSGVINSVLRLFPQSDDSFRTV-----LVKCLRVFVTFGNENRVIVARNGG  140 (461)
Q Consensus        66 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~-----~~~~l~~l~~~~~~~~~~~~~~g~  140 (461)
                      .++-.|-||+..|+++-.. +.     +    ..-.+++.+..+. .+..+     ..+.+..+...++.....+     
T Consensus       202 ~~~isqYHalGlLyq~kr~-dk-----m----a~lklv~hf~~n~-smknq~a~V~lvr~~~~ll~~n~q~~~q~-----  265 (898)
T COG5240         202 GNPISQYHALGLLYQSKRT-DK-----M----AQLKLVEHFRGNA-SMKNQLAGVLLVRATVELLKENSQALLQL-----  265 (898)
T ss_pred             CChHHHHHHHHHHHHHhcc-cH-----H----HHHHHHHHhhccc-ccccchhheehHHHHHHHHHhChHHHHHH-----
Confidence            4577888888888888873 21     1    2234555555443 22222     2233334444454433333     


Q ss_pred             HHHHHHHhcCCChHHHHHHHHHHHHhhCChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCchhHHHHHhc
Q 044999          141 LEIVIDLLNSCNDGTRRYLLEILSALALLREVRRVLICLGGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRARRLLVEL  220 (461)
Q Consensus       141 i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~  220 (461)
                      .|.|-..+++.-+.+...+++.+..++... ....+++ ..+..|-.+|.+.....|-.|+++|..++...+.+-...+.
T Consensus       266 rpfL~~wls~k~emV~lE~Ar~v~~~~~~n-v~~~~~~-~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv~vcN~  343 (898)
T COG5240         266 RPFLNSWLSDKFEMVFLEAARAVCALSEEN-VGSQFVD-QTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKVSVCNK  343 (898)
T ss_pred             HHHHHHHhcCcchhhhHHHHHHHHHHHHhc-cCHHHHH-HHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCceeeecCh
Confidence            345666677777788899999998887322 1112222 14667778888999999999999999998776543222111


Q ss_pred             C------------ChHHHHHhcccCCHHHHHHHHHHHHHHhcC-c-cchhhhhhc-------------CCHHHHHHHhC-
Q 044999          221 G------------VIPGLVELFHIGDWTTKLVAGNTLGVVAAH-V-EYITPVAEA-------------GAIPLYAELLQ-  272 (461)
Q Consensus       221 ~------------~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~-~-~~~~~~~~~-------------g~i~~L~~ll~-  272 (461)
                      .            ..-.+..+|+.++.+....-...+.++..+ . ..+..+++.             ..+.-|...|. 
T Consensus       344 evEsLIsd~Nr~IstyAITtLLKTGt~e~idrLv~~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~k~~s~l~FL~~~L~~  423 (898)
T COG5240         344 EVESLISDENRTISTYAITTLLKTGTEETIDRLVNLIPSFVHDMSDGFKIIAIDALRSLSLLFPSKKLSYLDFLGSSLLQ  423 (898)
T ss_pred             hHHHHhhcccccchHHHHHHHHHcCchhhHHHHHHHHHHHHHhhccCceEEeHHHHHHHHhhCcHHHHHHHHHHHHHHHh
Confidence            0            111233344444433333333333333222 1 111110000             00112222211 


Q ss_pred             CCChhHHHHHHHHHHHhc-cCcccHHHHHHHHHHHhccC-CHHHHHHHHHHHHHhhCC-CCchhHHhhcCCHHHHHHhhc
Q 044999          273 GPDSTGKEISEDVFCILA-VSEANANAIAEHLVRILREG-DNEANAAAADVLWDLAGY-KHSVPVIRNSGAIPILVNLLR  349 (461)
Q Consensus       273 ~~~~~~~~~a~~~L~~l~-~~~~~~~~i~~~l~~ll~~~-~~~~~~~a~~~L~~l~~~-~~~~~~l~~~g~i~~L~~ll~  349 (461)
                      .+..+.+..+..++..+. ..|+.++...+.|...+.+. .++   -++.+|.-|... |....   -...+..+..-+-
T Consensus       424 eGg~eFK~~~Vdaisd~~~~~p~skEraLe~LC~fIEDcey~~---I~vrIL~iLG~EgP~a~~---P~~yvrhIyNR~i  497 (898)
T COG5240         424 EGGLEFKKYMVDAISDAMENDPDSKERALEVLCTFIEDCEYHQ---ITVRILGILGREGPRAKT---PGKYVRHIYNRLI  497 (898)
T ss_pred             cccchHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHhhcchhH---HHHHHHHHhcccCCCCCC---cchHHHHHHHHHH
Confidence            112333333333333332 12222222223333332211 122   112222222211 10000   0001222333333


Q ss_pred             CCCHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhccCCCHHHHHHHHHHHHHhcCCCcchHHHHHhhCCchHHhH
Q 044999          350 GENDEVREKVSGAIAQLSYNEADRVALADAGAVPIMIELLHDESEELRDNAAESLINFSEDPLQHERISEAIGIPSFQSM  429 (461)
Q Consensus       350 ~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~~~~~~~~~l  429 (461)
                      -.+.-+|..|..+|..++.+.+..  +....+...|.+.+++.++++|..|..+|.++-..+.+.+ +.+....+.+..+
T Consensus       498 LEN~ivRsaAv~aLskf~ln~~d~--~~~~sv~~~lkRclnD~DdeVRdrAsf~l~~~~~~da~~p-l~~sd~~~dipsl  574 (898)
T COG5240         498 LENNIVRSAAVQALSKFALNISDV--VSPQSVENALKRCLNDQDDEVRDRASFLLRNMRLSDACEP-LFSSDELGDIPSL  574 (898)
T ss_pred             HhhhHHHHHHHHHHHHhccCcccc--ccHHHHHHHHHHHhhcccHHHHHHHHHHHHhhhhhhhhhc-cccccccCCcchh
Confidence            345568888999998877732211  1111234567788899999999999999999975554443 4444444444433


Q ss_pred             HH
Q 044999          430 QS  431 (461)
Q Consensus       430 ~~  431 (461)
                      ..
T Consensus       575 e~  576 (898)
T COG5240         575 EL  576 (898)
T ss_pred             HH
Confidence            33

>KOG2259 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.29  E-value=2.4e-05  Score=74.42  Aligned_cols=296  Identities=15%  Similarity=0.089  Sum_probs=183.6

Q ss_pred             cHHHhHHHHHHHhhcCCHHHHHHHHHHHHhhcCCCchhHHHh-hHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHhcC
Q 044999            7 NWEEAFNRFEQAVVSGSEALQVKALTKLARVSKFAPQDILAA-TIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQA   85 (461)
Q Consensus         7 ~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~la~~~~~~~l~~-~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~   85 (461)
                      +-+.+...+..+..+.|..||..|+.++..|.+   ..++-+ +....++.+..      ++.+++..|++.+.-.+..-
T Consensus       195 d~~~~~~~l~~~~~~~D~~Vrt~A~eglL~L~e---g~kL~~~~Y~~A~~~lsD------~~e~VR~aAvqlv~v~gn~~  265 (823)
T KOG2259|consen  195 DREHAARGLIYLEHDQDFRVRTHAVEGLLALSE---GFKLSKACYSRAVKHLSD------DYEDVRKAAVQLVSVWGNRC  265 (823)
T ss_pred             cHHHHHHHHHHHhcCCCcchHHHHHHHHHhhcc---cccccHHHHHHHHHHhcc------hHHHHHHHHHHHHHHHHhcC
Confidence            344555558889999999999999999988883   122334 66777778874      44556666666655554320


Q ss_pred             --C---chhHHHHHhcCCHHHHHhcCCCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhcCCChHHHHHHH
Q 044999           86 --D---GALATEIGQSGVINSVLRLFPQSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLNSCNDGTRRYLL  160 (461)
Q Consensus        86 --~---~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~  160 (461)
                        +   +.....+. ..+...+...+++.+..++..+++.+..+-.-+++.-.....-    .++.-++... .-.+..-
T Consensus       266 p~~~e~e~~e~kl~-D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdK----Klms~lRRkr-~ahkrpk  339 (823)
T KOG2259|consen  266 PAPLERESEEEKLK-DAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDK----KLMSRLRRKR-TAHKRPK  339 (823)
T ss_pred             CCcccchhhhhhhH-HHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHH----HHhhhhhhhh-hcccchH
Confidence              1   11111221 2345677788888899999999988886654332221111111    1111010000 0000000


Q ss_pred             HHHHHh--h------------CChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCchh-HHHHHhcCChHH
Q 044999          161 EILSAL--A------------LLREVRRVLICLGGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRA-RRLLVELGVIPG  225 (461)
Q Consensus       161 ~~L~~l--~------------~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~-~~~~~~~~~i~~  225 (461)
                      ....+.  +            ..++....++..|....++.-+.++-.++|..|...++.|+.+.+. ...     .+..
T Consensus       340 ~l~s~GewSsGk~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~FA~~-----aldf  414 (823)
T KOG2259|consen  340 ALYSSGEWSSGKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPGFAVR-----ALDF  414 (823)
T ss_pred             HHHhcCCcccCccccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCCcHHH-----HHHH
Confidence            111111  0            1223345677788888888888888889999999999999987765 322     5789


Q ss_pred             HHHhcccCCHHHHHHHHHHHHHHhcCccchhhhhhcCCHHHHHHHhCCCChhHHHHHHHHHHHhccCcccHHHHH-HHHH
Q 044999          226 LVELFHIGDWTTKLVAGNTLGVVAAHVEYITPVAEAGAIPLYAELLQGPDSTGKEISEDVFCILAVSEANANAIA-EHLV  304 (461)
Q Consensus       226 L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~i~-~~l~  304 (461)
                      |++++.++...++..|..+|..++.+-..++..     ++.++..|.+.++++|+..-..|++.-..+-.+-.+. ..++
T Consensus       415 LvDMfNDE~~~VRL~ai~aL~~Is~~l~i~eeq-----l~~il~~L~D~s~dvRe~l~elL~~~~~~d~~~i~m~v~~lL  489 (823)
T KOG2259|consen  415 LVDMFNDEIEVVRLKAIFALTMISVHLAIREEQ-----LRQILESLEDRSVDVREALRELLKNARVSDLECIDMCVAHLL  489 (823)
T ss_pred             HHHHhccHHHHHHHHHHHHHHHHHHHheecHHH-----HHHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Confidence            999999999999999999999999873333333     7899999999999999988888888755544443333 4444


Q ss_pred             HHhccCCHHHHHHHHHHHHHhhCC
Q 044999          305 RILREGDNEANAAAADVLWDLAGY  328 (461)
Q Consensus       305 ~ll~~~~~~~~~~a~~~L~~l~~~  328 (461)
                      ..|.. .|.-+.....+++.+..+
T Consensus       490 ~~L~k-yPqDrd~i~~cm~~iGqn  512 (823)
T KOG2259|consen  490 KNLGK-YPQDRDEILRCMGRIGQN  512 (823)
T ss_pred             HHhhh-CCCCcHHHHHHHHHHhcc
Confidence            44321 122222444555555543

>COG1413 FOG: HEAT repeat [Energy production and conversion]

Probab=98.29  E-value=0.0011  Score=61.80  Aligned_cols=248  Identities=23%  Similarity=0.224  Sum_probs=136.2

Q ss_pred             hHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHhcCCCCCHHHHHHHHHHHHHHhccC
Q 044999           49 TIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQADGALATEIGQSGVINSVLRLFPQSDDSFRTVLVKCLRVFVTFG  128 (461)
Q Consensus        49 ~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~l~~~~  128 (461)
                      .++.+++.+..    .  ++.++..++..+..+..            .-.++.+.+.+.+.++.++..++.++..+-...
T Consensus        44 ~~~~~~~~l~~----~--~~~vr~~aa~~l~~~~~------------~~av~~l~~~l~d~~~~vr~~a~~aLg~~~~~~  105 (335)
T COG1413          44 AADELLKLLED----E--DLLVRLSAAVALGELGS------------EEAVPLLRELLSDEDPRVRDAAADALGELGDPE  105 (335)
T ss_pred             hHHHHHHHHcC----C--CHHHHHHHHHHHhhhch------------HHHHHHHHHHhcCCCHHHHHHHHHHHHccCChh
Confidence            55666666664    2  34444445555444432            124566777777777777777777555444222


Q ss_pred             hhhHHHHHHcCCHHHHHHHhc-CCChHHHHHHHHHHHHhhCChHHHHHHHhcCCHHHHHHHHcCCCH------------H
Q 044999          129 NENRVIVARNGGLEIVIDLLN-SCNDGTRRYLLEILSALALLREVRRVLICLGGLRYLVEAVSFGSM------------V  195 (461)
Q Consensus       129 ~~~~~~~~~~g~i~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~------------~  195 (461)
                                 .++.+++++. +.+..+|..+..+|..+-.          ...+..++..+.+...            .
T Consensus       106 -----------a~~~li~~l~~d~~~~vR~~aa~aL~~~~~----------~~a~~~l~~~l~~~~~~~a~~~~~~~~~~  164 (335)
T COG1413         106 -----------AVPPLVELLENDENEGVRAAAARALGKLGD----------ERALDPLLEALQDEDSGSAAAALDAALLD  164 (335)
T ss_pred             -----------HHHHHHHHHHcCCcHhHHHHHHHHHHhcCc----------hhhhHHHHHHhccchhhhhhhhccchHHH
Confidence                       3566666666 4666777777777765531          1124445555554331            3


Q ss_pred             HHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhcccCCHHHHHHHHHHHHHHhcCccchhhhhhcCCHHHHHHHhCCCC
Q 044999          196 SRERACQAIGLLAVTGRARRLLVELGVIPGLVELFHIGDWTTKLVAGNTLGVVAAHVEYITPVAEAGAIPLYAELLQGPD  275 (461)
Q Consensus       196 ~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~ll~~~~  275 (461)
                      ++..+...++.+          .+...++.+...+.+.+..++..+..+|..+....        ..+.+.+...+.+.+
T Consensus       165 ~r~~a~~~l~~~----------~~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~--------~~~~~~l~~~~~~~~  226 (335)
T COG1413         165 VRAAAAEALGEL----------GDPEAIPLLIELLEDEDADVRRAAASALGQLGSEN--------VEAADLLVKALSDES  226 (335)
T ss_pred             HHHHHHHHHHHc----------CChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch--------hhHHHHHHHHhcCCC
Confidence            455555555544          23345677777777777777777777777766543        233566777777777


Q ss_pred             hhHHHHHHHHHHHhccCcccHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCchhHHhhcCCHHHHHHhhcCCCHHH
Q 044999          276 STGKEISEDVFCILAVSEANANAIAEHLVRILREGDNEANAAAADVLWDLAGYKHSVPVIRNSGAIPILVNLLRGENDEV  355 (461)
Q Consensus       276 ~~~~~~a~~~L~~l~~~~~~~~~i~~~l~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~ll~~~~~~v  355 (461)
                      ..++..++..|..+-....     .+.+...+...++.++..+...+...          ........+...+.+....+
T Consensus       227 ~~vr~~~~~~l~~~~~~~~-----~~~l~~~l~~~~~~~~~~~~~~~~~~----------~~~~~~~~l~~~~~~~~~~~  291 (335)
T COG1413         227 LEVRKAALLALGEIGDEEA-----VDALAKALEDEDVILALLAAAALGAL----------DLAEAALPLLLLLIDEANAV  291 (335)
T ss_pred             HHHHHHHHHHhcccCcchh-----HHHHHHHHhccchHHHHHHHHHhccc----------CchhhHHHHHHHhhcchhhH
Confidence            7777777766665533221     13444445555544444443333310          01122334444555555555


Q ss_pred             HHHHHHHHHHhcC
Q 044999          356 REKVSGAIAQLSY  368 (461)
Q Consensus       356 ~~~a~~~L~~l~~  368 (461)
                      +..+..++.....
T Consensus       292 ~~~~~~~l~~~~~  304 (335)
T COG1413         292 RLEAALALGQIGQ  304 (335)
T ss_pred             HHHHHHHHHhhcc
Confidence            6666555555544

>COG1413 FOG: HEAT repeat [Energy production and conversion]

Probab=98.27  E-value=0.0006  Score=63.60  Aligned_cols=252  Identities=23%  Similarity=0.243  Sum_probs=176.9

Q ss_pred             CCHHHHHhcCCCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHhhCChHHHHHH
Q 044999           97 GVINSVLRLFPQSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLNSCNDGTRRYLLEILSALALLREVRRVL  176 (461)
Q Consensus        97 ~~l~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~  176 (461)
                      ..++.+.+.+.+.++.++..++..+..+...           ..++.+..++.+.++.+|..|..+|..+-         
T Consensus        43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~~~-----------~av~~l~~~l~d~~~~vr~~a~~aLg~~~---------  102 (335)
T COG1413          43 EAADELLKLLEDEDLLVRLSAAVALGELGSE-----------EAVPLLRELLSDEDPRVRDAAADALGELG---------  102 (335)
T ss_pred             hhHHHHHHHHcCCCHHHHHHHHHHHhhhchH-----------HHHHHHHHHhcCCCHHHHHHHHHHHHccC---------
Confidence            3678888999988888888888775544422           25888999999999999999999776552         


Q ss_pred             HhcCCHHHHHHHHc-CCCHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhcccCCH------------HHHHHHHH
Q 044999          177 ICLGGLRYLVEAVS-FGSMVSRERACQAIGLLAVTGRARRLLVELGVIPGLVELFHIGDW------------TTKLVAGN  243 (461)
Q Consensus       177 ~~~~~l~~l~~~l~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~------------~~~~~a~~  243 (461)
                       ....++.++.++. +.+..+|..+.++|+.+-.          ...+..++..+.+...            .++..+..
T Consensus       103 -~~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~----------~~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~  171 (335)
T COG1413         103 -DPEAVPPLVELLENDENEGVRAAAARALGKLGD----------ERALDPLLEALQDEDSGSAAAALDAALLDVRAAAAE  171 (335)
T ss_pred             -ChhHHHHHHHHHHcCCcHhHHHHHHHHHHhcCc----------hhhhHHHHHHhccchhhhhhhhccchHHHHHHHHHH
Confidence             2335788888888 5799999999999999833          3347777777776552            24444444


Q ss_pred             HHHHHhcCccchhhhhhcCCHHHHHHHhCCCChhHHHHHHHHHHHhccCcccHHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 044999          244 TLGVVAAHVEYITPVAEAGAIPLYAELLQGPDSTGKEISEDVFCILAVSEANANAIAEHLVRILREGDNEANAAAADVLW  323 (461)
Q Consensus       244 ~L~~l~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~l~~ll~~~~~~~~~~a~~~L~  323 (461)
                      .+..+.          ....++.+...+.+.+..++..+..+|..+....   ..+.+.+...+.+.+..++..++..++
T Consensus       172 ~l~~~~----------~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~---~~~~~~l~~~~~~~~~~vr~~~~~~l~  238 (335)
T COG1413         172 ALGELG----------DPEAIPLLIELLEDEDADVRRAAASALGQLGSEN---VEAADLLVKALSDESLEVRKAALLALG  238 (335)
T ss_pred             HHHHcC----------ChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch---hhHHHHHHHHhcCCCHHHHHHHHHHhc
Confidence            444432          2234678888888888899999999998887665   334477788888888999988888887


Q ss_pred             HhhCCCCchhHHhhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhccCCCHHHHHHHHHH
Q 044999          324 DLAGYKHSVPVIRNSGAIPILVNLLRGENDEVREKVSGAIAQLSYNEADRVALADAGAVPIMIELLHDESEELRDNAAES  403 (461)
Q Consensus       324 ~l~~~~~~~~~l~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~  403 (461)
                      .+-.          ...++.+...+.+.+..++..+...+...-.          ......+...+.+....++..+..+
T Consensus       239 ~~~~----------~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~----------~~~~~~l~~~~~~~~~~~~~~~~~~  298 (335)
T COG1413         239 EIGD----------EEAVDALAKALEDEDVILALLAAAALGALDL----------AEAALPLLLLLIDEANAVRLEAALA  298 (335)
T ss_pred             ccCc----------chhHHHHHHHHhccchHHHHHHHHHhcccCc----------hhhHHHHHHHhhcchhhHHHHHHHH
Confidence            7743          2356667777887777666665554441110          1124555666666777777777777


Q ss_pred             HHHhcCCCc
Q 044999          404 LINFSEDPL  412 (461)
Q Consensus       404 L~~l~~~~~  412 (461)
                      +........
T Consensus       299 l~~~~~~~~  307 (335)
T COG1413         299 LGQIGQEKA  307 (335)
T ss_pred             HHhhcccch
Confidence            776665543

>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term

Probab=98.27  E-value=0.00023  Score=66.17  Aligned_cols=243  Identities=13%  Similarity=0.077  Sum_probs=171.9

Q ss_pred             CChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhcccC--CHHHHHHHHHHH
Q 044999          168 LLREVRRVLICLGGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRARRLLVELGVIPGLVELFHIG--DWTTKLVAGNTL  245 (461)
Q Consensus       168 ~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~--~~~~~~~a~~~L  245 (461)
                      .++..+..+.-....+.+..++-+++.++|..+.++++.+..+.+.-..+.+.+.--.++.-+..+  +..=++.|+..+
T Consensus        13 ~~p~l~~~~~~~~~~~~i~~~lL~~~~~vraa~yRilRy~i~d~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkli   92 (371)
T PF14664_consen   13 RHPTLKYDLVLSFFGERIQCMLLSDSKEVRAAGYRILRYLISDEESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLI   92 (371)
T ss_pred             hCchhhhhhhHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHcCHHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHH
Confidence            344444444444455556555555569999999999999999999888888887766777766643  445677899998


Q ss_pred             HHHhcCccchhhhhhcCCHHHHHHHhCCCChhHHHHHHHHHHHhccCcccH-HHHH--HHHHHHhccCCHHHHHHHHHHH
Q 044999          246 GVVAAHVEYITPVAEAGAIPLYAELLQGPDSTGKEISEDVFCILAVSEANA-NAIA--EHLVRILREGDNEANAAAADVL  322 (461)
Q Consensus       246 ~~l~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~-~~i~--~~l~~ll~~~~~~~~~~a~~~L  322 (461)
                      +.+...++.... ...|++..++.+..+.+...+..|..+|+.++..++.- ....  ..+.+.+.++..+..+..+.++
T Consensus        93 R~~l~~~~~~~~-~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P~lv~~~gG~~~L~~~l~d~~~~~~~~l~~~l  171 (371)
T PF14664_consen   93 RAFLEIKKGPKE-IPRGVVRALVAIAEHEDDRLRRICLETLCELALLNPELVAECGGIRVLLRALIDGSFSISESLLDTL  171 (371)
T ss_pred             HHHHHhcCCccc-CCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHHHHHHcCCHHHHHHHHHhccHhHHHHHHHHH
Confidence            888766433322 35678999999999999999999999999997654332 2222  7778777767666888999999


Q ss_pred             HHhhCCCCchhHHhhcCCHHHHHHhhcCC-------CH--HHHHHHHHHHHHhcCChhhHHHHHhC--CChHHHHHhccC
Q 044999          323 WDLAGYKHSVPVIRNSGAIPILVNLLRGE-------ND--EVREKVSGAIAQLSYNEADRVALADA--GAVPIMIELLHD  391 (461)
Q Consensus       323 ~~l~~~~~~~~~l~~~g~i~~L~~ll~~~-------~~--~v~~~a~~~L~~l~~~~~~~~~~~~~--~~i~~L~~ll~~  391 (461)
                      ..+-..|..+..+...--++.+..-+.+.       +.  +.-..+..++..+-++-..--.+...  .++..|+..++.
T Consensus       172 L~lLd~p~tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~lksLv~~L~~  251 (371)
T PF14664_consen  172 LYLLDSPRTRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRGLKSLVDSLRL  251 (371)
T ss_pred             HHHhCCcchhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchHHHHHHHHHcC
Confidence            99999999988887655566666555433       12  23344555566655532222223322  478999999999


Q ss_pred             CCHHHHHHHHHHHHHhcCCC
Q 044999          392 ESEELRDNAAESLINFSEDP  411 (461)
Q Consensus       392 ~~~~~~~~a~~~L~~l~~~~  411 (461)
                      ++++++......+..+..-+
T Consensus       252 p~~~ir~~Ildll~dllrik  271 (371)
T PF14664_consen  252 PNPEIRKAILDLLFDLLRIK  271 (371)
T ss_pred             CCHHHHHHHHHHHHHHHCCC
Confidence            99999999999999886443

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]

Probab=98.24  E-value=1.2e-05  Score=70.36  Aligned_cols=179  Identities=17%  Similarity=0.093  Sum_probs=119.4

Q ss_pred             cCCCHHHHHHHHHHHHHhhcCc---hhHHHHHh--cCChHHHHHhcccCCHHHHHHHHHHHHHHhcCccchhhhhhcCCH
Q 044999          190 SFGSMVSRERACQAIGLLAVTG---RARRLLVE--LGVIPGLVELFHIGDWTTKLVAGNTLGVVAAHVEYITPVAEAGAI  264 (461)
Q Consensus       190 ~~~~~~~~~~a~~~L~~l~~~~---~~~~~~~~--~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i  264 (461)
                      .+.+++.|..++..|..+...+   .....+.+  ...+..+...+.+....+...|+.++..++..-...-.-.-..++
T Consensus        17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l   96 (228)
T PF12348_consen   17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADILL   96 (228)
T ss_dssp             T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHHHH
T ss_pred             CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHH
Confidence            5568999999999999988776   22333333  246677778888778889999999999998762222111233568


Q ss_pred             HHHHHHhCCCChhHHHHHHHHHHHhccCcccHHHH-HHHHHHHhccCCHHHHHHHHHHHHHhhCC-CCchhHHhh----c
Q 044999          265 PLYAELLQGPDSTGKEISEDVFCILAVSEANANAI-AEHLVRILREGDNEANAAAADVLWDLAGY-KHSVPVIRN----S  338 (461)
Q Consensus       265 ~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~i-~~~l~~ll~~~~~~~~~~a~~~L~~l~~~-~~~~~~l~~----~  338 (461)
                      |.|+..+.+....++..|..+|..+..+-.....+ .+.+...+.+.++.+|..++..+..+... +.....+-.    .
T Consensus        97 ~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~  176 (228)
T PF12348_consen   97 PPLLKKLGDSKKFIREAANNALDAIIESCSYSPKILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQKSAFLK  176 (228)
T ss_dssp             HHHHHGGG---HHHHHHHHHHHHHHHTTS-H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--HHHHH
T ss_pred             HHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhcccchHH
Confidence            99999999999999999999999998776633444 58888888999999999999999998854 312222222    3


Q ss_pred             CCHHHHHHhhcCCCHHHHHHHHHHHHHhcC
Q 044999          339 GAIPILVNLLRGENDEVREKVSGAIAQLSY  368 (461)
Q Consensus       339 g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~  368 (461)
                      ..++.+...+.+++++||..|-.++..+..
T Consensus       177 ~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~  206 (228)
T PF12348_consen  177 QLVKALVKLLSDADPEVREAARECLWALYS  206 (228)
T ss_dssp             HHHHHHHHHHTSS-HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
Confidence            467888999999999999999999999977

The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.

>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless

Probab=98.23  E-value=2.4e-06  Score=51.75  Aligned_cols=41  Identities=27%  Similarity=0.522  Sum_probs=38.3

Q ss_pred             ChhhHHHHHhCCChHHHHHhccCCCHHHHHHHHHHHHHhcC
Q 044999          369 NEADRVALADAGAVPIMIELLHDESEELRDNAAESLINFSE  409 (461)
Q Consensus       369 ~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~  409 (461)
                      +++++..+++.|++|.|++++++.+++++..|+++|.||+.
T Consensus         1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~   41 (41)
T PF00514_consen    1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLAA   41 (41)
T ss_dssp             SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence            46789999999999999999999999999999999999973

Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=98.20  E-value=0.00024  Score=72.41  Aligned_cols=284  Identities=13%  Similarity=0.058  Sum_probs=184.6

Q ss_pred             CCHHHHHHHHHHHHhhc-CCCchhHHHhhHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHhcC--CchhHHHHHhcCC
Q 044999           22 GSEALQVKALTKLARVS-KFAPQDILAATIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQA--DGALATEIGQSGV   98 (461)
Q Consensus        22 ~~~~~~~~a~~~l~~la-~~~~~~~l~~~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~--~~~~~~~~~~~~~   98 (461)
                      .....|..|+..|..++ .-.....+.+++|-++.++..      .+.++|..|+.+|..+...-  -...-..++....
T Consensus       435 k~~~tK~~ALeLl~~lS~~i~de~~LDRVlPY~v~l~~D------s~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYl  508 (1431)
T KOG1240|consen  435 KTIQTKLAALELLQELSTYIDDEVKLDRVLPYFVHLLMD------SEADVRATALETLTELLALVRDIPPSDANIFPEYL  508 (1431)
T ss_pred             hcchhHHHHHHHHHHHhhhcchHHHHhhhHHHHHHHhcC------chHHHHHHHHHHHHHHHhhccCCCcccchhhHhhh
Confidence            35678999999999999 555555677799999999985      45668888999988887521  1233345556667


Q ss_pred             HHHHHhcCCC-CCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHhhCChHHHHHHH
Q 044999           99 INSVLRLFPQ-SDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLNSCNDGTRRYLLEILSALALLREVRRVLI  177 (461)
Q Consensus        99 l~~L~~ll~~-~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~  177 (461)
                      .|.|-.++.+ ....++..-|.++..|+...    ..|.+.+.-.....+++..+.+       ..... ..+.....+.
T Consensus       509 fP~L~~l~~d~~~~~vRiayAsnla~LA~tA----~rFle~~q~~~~~g~~n~~nse-------t~~~~-~~~~~~~~L~  576 (1431)
T KOG1240|consen  509 FPHLNHLLNDSSAQIVRIAYASNLAQLAKTA----YRFLELTQELRQAGMLNDPNSE-------TAPEQ-NYNTELQALH  576 (1431)
T ss_pred             hhhhHhhhccCccceehhhHHhhHHHHHHHH----HHHHHHHHHHHhcccccCcccc-------ccccc-ccchHHHHHH
Confidence            8888888887 55667777888888888432    2222221111222233333322       00000 1111122222


Q ss_pred             hcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhcccCCHHHHHHHHHHHHHHhcCccchhh
Q 044999          178 CLGGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRARRLLVELGVIPGLVELFHIGDWTTKLVAGNTLGVVAAHVEYITP  257 (461)
Q Consensus       178 ~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~  257 (461)
                      + ++-+....++.+..+-+++..+..|.-|+..-.-.+  .+.=.++.|+..|.+.++..|..-...+..++..-.-|  
T Consensus       577 ~-~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~k--sND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~r--  651 (1431)
T KOG1240|consen  577 H-TVEQMVSSLLSDSPPIVKRALLESIIPLCVFFGKEK--SNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGWR--  651 (1431)
T ss_pred             H-HHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhhhcc--cccchHHHHHHHhcCccHHHHHHHHhhccceEEEEeee--
Confidence            2 233345566666677888887777777754322100  01125788999999999988887666666666542222  


Q ss_pred             hhhcCCHHHHHHHhCCCChhHHHHHHHHHHHhccCcccHHHHH----HHHHHHhccCCHHHHHHHHHHHHHhhCC
Q 044999          258 VAEAGAIPLYAELLQGPDSTGKEISEDVFCILAVSEANANAIA----EHLVRILREGDNEANAAAADVLWDLAGY  328 (461)
Q Consensus       258 ~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~i~----~~l~~ll~~~~~~~~~~a~~~L~~l~~~  328 (461)
                      -++...+|.|.+-+.+.++.|...|+.+|..|....-.++..+    +.+..+|-.++.-+|..++.+|...+..
T Consensus       652 s~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~~v~~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~~  726 (1431)
T KOG1240|consen  652 SVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRKPAVKDILQDVLPLLCHPNLWIRRAVLGIIAAIARQ  726 (1431)
T ss_pred             eHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccchHHHHHHHHhhhhheeCchHHHHHHHHHHHHHHHhh
Confidence            1344568999999999999999999999998876555444333    6777788888999999999999988754

>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]

Probab=98.16  E-value=0.011  Score=59.20  Aligned_cols=240  Identities=12%  Similarity=0.059  Sum_probs=143.4

Q ss_pred             HHHhHHHHHHHhhcCCHHHHHHHHHHHHhhcCCCchhHHHhhHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHhcCCc
Q 044999            8 WEEAFNRFEQAVVSGSEALQVKALTKLARVSKFAPQDILAATIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQADG   87 (461)
Q Consensus         8 ~~~~~~~l~~ll~~~~~~~~~~a~~~l~~la~~~~~~~l~~~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~   87 (461)
                      +...++.+++.+.+.|.++++..=.-+-+.+...+ +...-+++.+.+-+++      +++..+..|.+++..+-..   
T Consensus        53 mssLf~dViK~~~trd~ElKrL~ylYl~~yak~~P-~~~lLavNti~kDl~d------~N~~iR~~AlR~ls~l~~~---  122 (757)
T COG5096          53 MSSLFPDVIKNVATRDVELKRLLYLYLERYAKLKP-ELALLAVNTIQKDLQD------PNEEIRGFALRTLSLLRVK---  122 (757)
T ss_pred             hHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCH-HHHHHHHHHHHhhccC------CCHHHHHHHHHHHHhcChH---
Confidence            66667777777777777777765555555551111 2222388888888886      4566777688888777651   


Q ss_pred             hhHHHHHhcCCHHHHHhcCCCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHhh
Q 044999           88 ALATEIGQSGVINSVLRLFPQSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLNSCNDGTRRYLLEILSALA  167 (461)
Q Consensus        88 ~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~  167 (461)
                      +.     -...++.+.+++.++++.||+.|+.++.++-.-+   +..+.+.|....+..++.+.+|.+...|+.++..+.
T Consensus       123 el-----~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld---~~l~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~  194 (757)
T COG5096         123 EL-----LGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLD---KDLYHELGLIDILKELVADSDPIVIANALASLAEID  194 (757)
T ss_pred             HH-----HHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcC---HhhhhcccHHHHHHHHhhCCCchHHHHHHHHHHHhc
Confidence            11     1235788999999999999999999999888655   466778888999999999999999999999999887


Q ss_pred             CChHHHHHHHh-cCCHHHHHHHHcCC-CHHHHHHHHHHHHHhhcCchh-HHHHHhcCChHHHHHhcccCCHHHHHHHHHH
Q 044999          168 LLREVRRVLIC-LGGLRYLVEAVSFG-SMVSRERACQAIGLLAVTGRA-RRLLVELGVIPGLVELFHIGDWTTKLVAGNT  244 (461)
Q Consensus       168 ~~~~~~~~~~~-~~~l~~l~~~l~~~-~~~~~~~a~~~L~~l~~~~~~-~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~  244 (461)
                      .. ........ ...++.+--..... .+..+..-+..|.......+. ...     ....+.....+.++.+...++..
T Consensus       195 ~e-~a~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~le~L~~~~~~~~~s~~~-----~~~~~~~~~~~~n~~vl~~av~~  268 (757)
T COG5096         195 PE-LAHGYSLEVILRIPQLDLLSLSVSTEWLLLIILEVLTERVPTTPDSAED-----FEERLSPPLQHNNAEVLLIAVKV  268 (757)
T ss_pred             hh-hhhhHHHHHHHHhhhccchhhhhhHHHHHHHHHHHHHccCCCCCCcHHH-----HHHhccchhhhCcHHHHHHHHHH
Confidence            33 11111111 00111111000111 123333333333333222222 222     23334445556677777777777


Q ss_pred             HHHHhcC-ccchhhhhhcCCHHHHHHHhCCC
Q 044999          245 LGVVAAH-VEYITPVAEAGAIPLYAELLQGP  274 (461)
Q Consensus       245 L~~l~~~-~~~~~~~~~~g~i~~L~~ll~~~  274 (461)
                      +..+... +.+.-..   ..-+.+..++..+
T Consensus       269 i~~l~~~~~~~~~~~---~~~~~l~~Ll~~~  296 (757)
T COG5096         269 ILRLLVFLPSNNLFL---ISSPPLVTLLAKP  296 (757)
T ss_pred             HHHHhhhhccccHHH---hhccHHHHHHcCC
Confidence            7776655 3333111   1234556665554

>PRK14707 hypothetical protein; Provisional

Probab=98.12  E-value=0.0084  Score=65.19  Aligned_cols=424  Identities=16%  Similarity=0.055  Sum_probs=234.7

Q ss_pred             CHHHHHHHHHHHHhhc-CCCchhHHHh-hHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHH
Q 044999           23 SEALQVKALTKLARVS-KFAPQDILAA-TIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQADGALATEIGQSGVIN  100 (461)
Q Consensus        23 ~~~~~~~a~~~l~~la-~~~~~~~l~~-~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~  100 (461)
                      +...+..+......++ ++..+..+.. .|..+++.+..    =.++++.+..+...-..++.  +......+-..|+-.
T Consensus       178 ~~~c~~aa~~la~~~~~~d~~~~~~~~q~ia~~lNa~sK----Wp~~~~c~~aa~~la~~l~~--~~~l~~~~~~q~va~  251 (2710)
T PRK14707        178 NPDCQAVAPRFAALVASDDRLRSAMDAQGVATVLNALCK----WPDTPDCGNAVSALAERLAD--ESRLRNELKPQELGN  251 (2710)
T ss_pred             CchHHHHHHHHHHHhcCChhhhcccchHHHHHHHHHHhc----CCCChhHHHHHHHHHHHHcC--cHHHHHhCChHHHHH
Confidence            3444444444445555 4444444443 77777777775    33445566555444444554  555555553344444


Q ss_pred             HHHhcCCCCCHHHHHHHHHHHH-HHhccChhhHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHH-hhCChHHHHHHHh
Q 044999          101 SVLRLFPQSDDSFRTVLVKCLR-VFVTFGNENRVIVARNGGLEIVIDLLNSCNDGTRRYLLEILSA-LALLREVRRVLIC  178 (461)
Q Consensus       101 ~L~~ll~~~~~~~~~~~~~~l~-~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~-l~~~~~~~~~~~~  178 (461)
                      .|-.+.+-++..++..++..+. .++ .+...++.+-..+.-..|=.+-+-++..+...|...|.. +..+++.++.+-.
T Consensus       252 ~lN~lsKwp~~~~C~~a~~~lA~rl~-~~~~l~~al~~q~vanalNalSKwpd~~vc~~Aa~~la~rl~~d~~l~~~~~~  330 (2710)
T PRK14707        252 ALNALSKWADTPVCAAAASALAERLV-DDPGLRKALDPINVTQALNALSKWADLPVCAEAAIALAERLADDPELCKALNA  330 (2710)
T ss_pred             HHHHHhcCCCchHHHHHHHHHHHHHh-hhHHHHHhcCHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHhccHhhhhccch
Confidence            4444455566666788887777 555 454556666555444444445566676666666655554 4466666654433


Q ss_pred             cCCHHHHHHHH-cCCCHHHHHHHHHHH-HHhhcCchhHHHHHhcCChHHHHHhcc-cCCHHHHHHHHHHHHHHhcCccch
Q 044999          179 LGGLRYLVEAV-SFGSMVSRERACQAI-GLLAVTGRARRLLVELGVIPGLVELFH-IGDWTTKLVAGNTLGVVAAHVEYI  255 (461)
Q Consensus       179 ~~~l~~l~~~l-~~~~~~~~~~a~~~L-~~l~~~~~~~~~~~~~~~i~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~~~~  255 (461)
                      .+ +...++.| +.++..+...+...| ..++.+.+.+..+-..|+-..|-.+-+ .+++.++..+...-..+..+.+.+
T Consensus       331 ~~-~~~~LNalsKWpd~~~C~~Aa~~LA~rl~~d~~l~~~l~~q~~a~~lNalsKWp~~~~c~~aa~~LA~~l~~d~~l~  409 (2710)
T PRK14707        331 RG-LSTALNALSKWPDNPVCAAAVSALAERLVADPELRKDLEPQGVSSVLNALSKWPDTPVCAAAASALAEHVVDDLELR  409 (2710)
T ss_pred             HH-HHHHHHHhhcCCCchhHHHHHHHHHHHhccCHhhhcccchhHHHHHHhhhhcCCCchHHHHHHHHHHHHhccChhhh
Confidence            33 44444444 455555555555544 456665555666554444333333434 334445544444445677778888


Q ss_pred             hhhhhcCCHHHHHHHhCCCChhHHHHHHHHHHHh-ccCcccHHHHH-HHHHHHhc----cC-CHHHHHHHHHHHHHhhCC
Q 044999          256 TPVAEAGAIPLYAELLQGPDSTGKEISEDVFCIL-AVSEANANAIA-EHLVRILR----EG-DNEANAAAADVLWDLAGY  328 (461)
Q Consensus       256 ~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l-~~~~~~~~~i~-~~l~~ll~----~~-~~~~~~~a~~~L~~l~~~  328 (461)
                      ..+-..|+-..|-.+-+.++..+...++..|.-- +.+.+-+..+. ..+.+.|+    =+ +|.....+-.....|+..
T Consensus       410 ~~~~~Q~van~lnalsKWPd~~~C~~aa~~lA~~la~d~~l~~~~~p~~va~~LnalSKWPd~p~c~~aa~~La~~l~~~  489 (2710)
T PRK14707        410 KGLDPQGVSNALNALAKWPDLPICGQAVSALAGRLAHDTELCKALDPINVTQALDALSKWPDTPICGQTASALAARLAHE  489 (2710)
T ss_pred             hhcchhhHHHHHHHhhcCCcchhHHHHHHHHHHHHhccHHHHhhcChHHHHHHHHHhhcCCCChhHHHHHHHHHHHhccc
Confidence            8887777666666666777888877777777644 55555555554 33444442    12 344444444445566655


Q ss_pred             CCchhHHhhcCCHHHHHHhhcCCC-HHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhc-cCCCHHHHHHHHHHHHH
Q 044999          329 KHSVPVIRNSGAIPILVNLLRGEN-DEVREKVSGAIAQLSYNEADRVALADAGAVPIMIELL-HDESEELRDNAAESLIN  406 (461)
Q Consensus       329 ~~~~~~l~~~g~i~~L~~ll~~~~-~~v~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll-~~~~~~~~~~a~~~L~~  406 (461)
                      ++.++.+--.++...|-.+-+-++ +.....+.++-..+.........|...+ +..++.-+ +.++......+...|..
T Consensus       490 ~~l~~a~~~q~~~~~L~aLSK~Pd~~~c~~A~~~lA~rl~~~~~l~~~~~~~~-~~~~lnalSKwp~s~~C~~A~~~iA~  568 (2710)
T PRK14707        490 RRLRKALKPQEVVIALHSLSKWPDTPICAEAASALAERVVDELQLRKAFDAHQ-VVNTLKALSKWPDKQLCAVAASGLAE  568 (2710)
T ss_pred             HHHHhhcCHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHhccchhhhhhhhhHH-HHHHHHhhhcCCchhHHHHHHHHHHH
Confidence            555444444344444444444444 3334444455555554444333333333 33344434 44555555555555655


Q ss_pred             hc-CCCcchHHHHHhhCCchHHhHHHHHHHhhhchhHHHHHHHHHhHhhhccCCCC
Q 044999          407 FS-EDPLQHERISEAIGIPSFQSMQSRLTRIRASDDLMARSMRRMSIEQLTWDPDL  461 (461)
Q Consensus       407 l~-~~~~~~~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~  461 (461)
                      +. .++.-++.|    ....+..+++.+.+|.+  ....++.+.....++..+|++
T Consensus       569 ~l~~~~~~~~~L----~aq~Vs~llNaLSKWP~--~~aC~~Aa~~LA~~l~~~~~l  618 (2710)
T PRK14707        569 RLADEPQLPKDL----HRQGVVIVLNALSKWPD--TAVCAEAVNALAERLVDEPDL  618 (2710)
T ss_pred             HhhcchhhHHhh----hhhHHHHHHHhhccCCC--cHHHHHHHHHHHHHhccChhh
Confidence            43 333333333    45667788888989884  677888888888888887764

>PRK14707 hypothetical protein; Provisional

Probab=98.11  E-value=0.018  Score=62.74  Aligned_cols=349  Identities=14%  Similarity=0.068  Sum_probs=193.6

Q ss_pred             HHhcCCCCCHHHHHHHHHHHH-HHhccChhhHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHH-hhCChHHHHHHHhc
Q 044999          102 VLRLFPQSDDSFRTVLVKCLR-VFVTFGNENRVIVARNGGLEIVIDLLNSCNDGTRRYLLEILSA-LALLREVRRVLICL  179 (461)
Q Consensus       102 L~~ll~~~~~~~~~~~~~~l~-~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~-l~~~~~~~~~~~~~  179 (461)
                      |-.+-+-++..+...++..+. .|. ++++.++.+-..+.-..|=.+-+-++..+...|...|.. ++.+++.+..+--.
T Consensus       295 lNalSKwpd~~vc~~Aa~~la~rl~-~d~~l~~~~~~~~~~~~LNalsKWpd~~~C~~Aa~~LA~rl~~d~~l~~~l~~q  373 (2710)
T PRK14707        295 LNALSKWADLPVCAEAAIALAERLA-DDPELCKALNARGLSTALNALSKWPDNPVCAAAVSALAERLVADPELRKDLEPQ  373 (2710)
T ss_pred             HhhhhcCCCchHHHHHHHHHHHHHh-ccHhhhhccchHHHHHHHHHhhcCCCchhHHHHHHHHHHHhccCHhhhcccchh
Confidence            333445677777888887777 455 566666666555544444445556666666666666655 44777777665544


Q ss_pred             CCHHHHHHHH-cCCCHHHHHHHHHHHH-HhhcCchhHHHHHhcCChHHHHHhcccCCHHHHHHHHHHH-HHHhcCccchh
Q 044999          180 GGLRYLVEAV-SFGSMVSRERACQAIG-LLAVTGRARRLLVELGVIPGLVELFHIGDWTTKLVAGNTL-GVVAAHVEYIT  256 (461)
Q Consensus       180 ~~l~~l~~~l-~~~~~~~~~~a~~~L~-~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L-~~l~~~~~~~~  256 (461)
                       ++...++.+ +.++......+...|. .+..+.+.++.|-..|+-..|-.+-+=++..+...++..| ..++.+.+.+.
T Consensus       374 -~~a~~lNalsKWp~~~~c~~aa~~LA~~l~~d~~l~~~~~~Q~van~lnalsKWPd~~~C~~aa~~lA~~la~d~~l~~  452 (2710)
T PRK14707        374 -GVSSVLNALSKWPDTPVCAAAASALAEHVVDDLELRKGLDPQGVSNALNALAKWPDLPICGQAVSALAGRLAHDTELCK  452 (2710)
T ss_pred             -HHHHHHhhhhcCCCchHHHHHHHHHHHHhccChhhhhhcchhhHHHHHHHhhcCCcchhHHHHHHHHHHHHhccHHHHh
Confidence             455555555 4556566666666665 4554444477666666555555555555555555555555 44566577777


Q ss_pred             hhhhcCCHHHHHHHhCCCChhHHHHHHHHHH-HhccCcccHHHHH-HHHHHHhc----cCC-HHHHHHHHHHHHHhhCCC
Q 044999          257 PVAEAGAIPLYAELLQGPDSTGKEISEDVFC-ILAVSEANANAIA-EHLVRILR----EGD-NEANAAAADVLWDLAGYK  329 (461)
Q Consensus       257 ~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~-~l~~~~~~~~~i~-~~l~~ll~----~~~-~~~~~~a~~~L~~l~~~~  329 (461)
                      .+-..++...|-.+-+.++..+...++..|. .|+...+-++.+- ..+...|+    -++ +...+.+.++-..+....
T Consensus       453 ~~~p~~va~~LnalSKWPd~p~c~~aa~~La~~l~~~~~l~~a~~~q~~~~~L~aLSK~Pd~~~c~~A~~~lA~rl~~~~  532 (2710)
T PRK14707        453 ALDPINVTQALDALSKWPDTPICGQTASALAARLAHERRLRKALKPQEVVIALHSLSKWPDTPICAEAASALAERVVDEL  532 (2710)
T ss_pred             hcChHHHHHHHHHhhcCCCChhHHHHHHHHHHHhcccHHHHhhcCHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHhccch
Confidence            6666665555555666777666665665554 4566555444444 33333332    222 333334444444444333


Q ss_pred             CchhHHhhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcC-ChhhHHHHHhCCChHHHHHhccC-C-CHHHHHHHHHHHHH
Q 044999          330 HSVPVIRNSGAIPILVNLLRGENDEVREKVSGAIAQLSY-NEADRVALADAGAVPIMIELLHD-E-SEELRDNAAESLIN  406 (461)
Q Consensus       330 ~~~~~l~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~-~~~~~~~~~~~~~i~~L~~ll~~-~-~~~~~~~a~~~L~~  406 (461)
                      .....+...+....+-.+.+.++......+...|..+.. .+..+..+- ...|..++..+.. + .+..+..+.+.-..
T Consensus       533 ~l~~~~~~~~~~~~lnalSKwp~s~~C~~A~~~iA~~l~~~~~~~~~L~-aq~Vs~llNaLSKWP~~~aC~~Aa~~LA~~  611 (2710)
T PRK14707        533 QLRKAFDAHQVVNTLKALSKWPDKQLCAVAASGLAERLADEPQLPKDLH-RQGVVIVLNALSKWPDTAVCAEAVNALAER  611 (2710)
T ss_pred             hhhhhhhhHHHHHHHHhhhcCCchhHHHHHHHHHHHHhhcchhhHHhhh-hhHHHHHHHhhccCCCcHHHHHHHHHHHHH
Confidence            333332322223333333444444555555555665544 444444443 4457888887743 4 44455555555555


Q ss_pred             hcCCCcchHHHHHhhCCchHHhHHHHHHHhhhchhHHHHHHHHHhHhhhccCC
Q 044999          407 FSEDPLQHERISEAIGIPSFQSMQSRLTRIRASDDLMARSMRRMSIEQLTWDP  459 (461)
Q Consensus       407 l~~~~~~~~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p  459 (461)
                      +...+.-+..+    ....+.+.++.+.+|.+  ++..+..+..+.+.+.-+|
T Consensus       612 l~~~~~lr~~l----~~q~lan~lNALSKWP~--s~~C~~Aa~rLA~rl~~~~  658 (2710)
T PRK14707        612 LVDEPDLRKEL----DPVDVTNVLNALSKWPG--TEVCAEVARLLAGRLVGDR  658 (2710)
T ss_pred             hccChhhhhhc----cHHHHHHHHhhhhcCCC--chHHHHHHHHHHHHhhhch
Confidence            55544433333    55677888888888884  4566666666555554443

>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []

Probab=98.10  E-value=0.00076  Score=64.80  Aligned_cols=252  Identities=15%  Similarity=0.089  Sum_probs=167.6

Q ss_pred             HHHHHHHHhcCCchhHHHHHhcCCHHHHHhcC----------CCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHH
Q 044999           75 AYCLKQIASQADGALATEIGQSGVINSVLRLF----------PQSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIV  144 (461)
Q Consensus        75 ~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~ll----------~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L  144 (461)
                      +.+|.-++.  +....+.+....++..|.++-          ...++.+...|.+||+|....++..|..+.+.|+.+.+
T Consensus         2 L~~LRiLsR--d~~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l   79 (446)
T PF10165_consen    2 LETLRILSR--DPTGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKL   79 (446)
T ss_pred             HHHHHHHcc--CcccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHH
Confidence            345555666  555555666656666666554          35578889999999999999999999999999999999


Q ss_pred             HHHhcCC-----ChHHHHHHHHHHHHhh-CChHHHHHHHhc-CCHHHHHHHHcCC-----------------CHHHHHHH
Q 044999          145 IDLLNSC-----NDGTRRYLLEILSALA-LLREVRRVLICL-GGLRYLVEAVSFG-----------------SMVSRERA  200 (461)
Q Consensus       145 ~~ll~~~-----~~~~~~~a~~~L~~l~-~~~~~~~~~~~~-~~l~~l~~~l~~~-----------------~~~~~~~a  200 (461)
                      ++.++..     +.++.....+.|.-++ ...+.+..+++. +++..+...+...                 +......+
T Consensus        80 ~~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~Ei  159 (446)
T PF10165_consen   80 CERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEI  159 (446)
T ss_pred             HHHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHH
Confidence            9999876     6788889999998888 677778777765 6777776655421                 23456788


Q ss_pred             HHHHHHhhcCchhHHHHHhcCChHHHHHhcc---------cCCHHHHHHHHHHHHHHhcC-ccc-------hhh----hh
Q 044999          201 CQAIGLLAVTGRARRLLVELGVIPGLVELFH---------IGDWTTKLVAGNTLGVVAAH-VEY-------ITP----VA  259 (461)
Q Consensus       201 ~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~---------~~~~~~~~~a~~~L~~l~~~-~~~-------~~~----~~  259 (461)
                      ++.+.|+..+.+....=.....++.++.++.         .+......+++.+|.|+-.. ...       ...    ..
T Consensus       160 LKllFNit~~~~~~~~~~~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~  239 (446)
T PF10165_consen  160 LKLLFNITLHYPKSVPEEFSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGD  239 (446)
T ss_pred             HHHHHHhhhccCcccchhhhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCC
Confidence            8999999877665221111223444444332         12345677888888887322 000       111    11


Q ss_pred             hcCCHHHHHHHhCCC-----C---hhHHHHHHHHHHHhccCc-ccHHHHH---------------------HHHHHHhcc
Q 044999          260 EAGAIPLYAELLQGP-----D---STGKEISEDVFCILAVSE-ANANAIA---------------------EHLVRILRE  309 (461)
Q Consensus       260 ~~g~i~~L~~ll~~~-----~---~~~~~~a~~~L~~l~~~~-~~~~~i~---------------------~~l~~ll~~  309 (461)
                      ....+..|+.+|...     +   .+.....+.+|.+++... ..+..+-                     ..|++++.+
T Consensus       240 ~~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~~~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~  319 (446)
T PF10165_consen  240 NMDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLARAAREVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMTS  319 (446)
T ss_pred             ChHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHHhcHHHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhCC
Confidence            123456666666421     1   134445556677775543 3333322                     889999998


Q ss_pred             CCHHHHHHHHHHHHHhhCC
Q 044999          310 GDNEANAAAADVLWDLAGY  328 (461)
Q Consensus       310 ~~~~~~~~a~~~L~~l~~~  328 (461)
                      ..+.++..+...|+.||..
T Consensus       320 ~~~~~k~~vaellf~Lc~~  338 (446)
T PF10165_consen  320 PDPQLKDAVAELLFVLCKE  338 (446)
T ss_pred             CCchHHHHHHHHHHHHHhh
Confidence            8899999999999999853

It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.

>KOG2734 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.09  E-value=0.0027  Score=58.15  Aligned_cols=242  Identities=17%  Similarity=0.105  Sum_probs=176.0

Q ss_pred             cChhhHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHhhCC------hH----HHHHHHhcCCHHHHHHHHcCCCHHH
Q 044999          127 FGNENRVIVARNGGLEIVIDLLNSCNDGTRRYLLEILSALALL------RE----VRRVLICLGGLRYLVEAVSFGSMVS  196 (461)
Q Consensus       127 ~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~------~~----~~~~~~~~~~l~~l~~~l~~~~~~~  196 (461)
                      ..|+.-..+++.++++.|+++|++.+.++....+..+..++..      .+    ....+++.++++.|++-+..-++.+
T Consensus       113 t~PdLYp~lveln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLvqnveRLdEsv  192 (536)
T KOG2734|consen  113 TMPDLYPILVELNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLVQNVERLDESV  192 (536)
T ss_pred             cChHHHHHHHHhccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHHHHHHHhhhcc
Confidence            5567777889999999999999999999999999999988721      12    2345666788999988876544433


Q ss_pred             ------HHHHHHHHHHhhcCchh-HHHHHhcCChHHHHHhccc--CCHHHHHHHHHHHHHHhcC-ccchhhhhhcCCHHH
Q 044999          197 ------RERACQAIGLLAVTGRA-RRLLVELGVIPGLVELFHI--GDWTTKLVAGNTLGVVAAH-VEYITPVAEAGAIPL  266 (461)
Q Consensus       197 ------~~~a~~~L~~l~~~~~~-~~~~~~~~~i~~L~~ll~~--~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~g~i~~  266 (461)
                            ....+..+-|+....+. ...+++.|.+..|+.-+..  .-......|...|.-+-.+ .+++..+..-.++..
T Consensus       193 keea~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~~~~~l~GiD~  272 (536)
T KOG2734|consen  193 KEEADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRKLLGPLDGIDV  272 (536)
T ss_pred             hhhhhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhhhhcCcccHHH
Confidence                  45677788888888877 8888888999888885552  3455677888888888777 557877777788888


Q ss_pred             HHHHhC---CC------ChhHHHHHHHHHHHhccCcccHHHHH----HHHHHHhccCCHHHHHHHHHHHHHhhCCC---C
Q 044999          267 YAELLQ---GP------DSTGKEISEDVFCILAVSEANANAIA----EHLVRILREGDNEANAAAADVLWDLAGYK---H  330 (461)
Q Consensus       267 L~~ll~---~~------~~~~~~~a~~~L~~l~~~~~~~~~i~----~~l~~ll~~~~~~~~~~a~~~L~~l~~~~---~  330 (461)
                      +++-+.   ..      ..+..++...+||.+...++++..+.    -.+..++-......+..++++|-....++   +
T Consensus       273 lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~~EGlqLm~Lmlr~Kk~sr~SalkvLd~am~g~~gt~  352 (536)
T KOG2734|consen  273 LLRQLAVYKRHDPATVDEEEMMENLFDCLCSLLMAPANRERFLKGEGLQLMNLMLREKKVSRGSALKVLDHAMFGPEGTP  352 (536)
T ss_pred             HHhhcchhhccCCCCcCHHHHHHHHHHHHHHHhcChhhhhhhhccccHHHHHHHHHHHHHhhhhHHHHHHHHHhCCCchH
Confidence            887652   22      24677888889999999999999888    44555554445566778888998888765   4


Q ss_pred             chhHHhhcCCHHHHHHhhc-CCC---------HHHHHHHHHHHHHhcC
Q 044999          331 SVPVIRNSGAIPILVNLLR-GEN---------DEVREKVSGAIAQLSY  368 (461)
Q Consensus       331 ~~~~l~~~g~i~~L~~ll~-~~~---------~~v~~~a~~~L~~l~~  368 (461)
                      ++..+++.+++..+..+.. .+.         .+.-+..+..|+.+-.
T Consensus       353 ~C~kfVe~lGLrtiF~~FMk~p~k~~~~~~t~~e~eEhv~siiaSl~~  400 (536)
T KOG2734|consen  353 NCNKFVEILGLRTIFPLFMKTPLKRKKRKISADEHEEHVCSILASLLR  400 (536)
T ss_pred             HHHHHHHHHhHHHHHHHHhhCccchhcccCcHHHHHHHHHHHHHHHHH
Confidence            6777888888877776654 222         2344455555555544

>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]

Probab=98.09  E-value=0.016  Score=59.11  Aligned_cols=333  Identities=14%  Similarity=0.054  Sum_probs=184.8

Q ss_pred             HHHhHHHHHHHhhcCCHHHHHHHHHHHHhhcCCCchhHHHhhHHHHHHhhccCCCCCCCcHHHHHH-HHHHHHHHHhcCC
Q 044999            8 WEEAFNRFEQAVVSGSEALQVKALTKLARVSKFAPQDILAATIPILARLLGENNFSGNLTRSIQQA-AAYCLKQIASQAD   86 (461)
Q Consensus         8 ~~~~~~~l~~ll~~~~~~~~~~a~~~l~~la~~~~~~~l~~~i~~l~~~l~~~~~~~~~~~~~~~~-a~~~L~~l~~~~~   86 (461)
                      .|..++.+.+.+++.|..+|=-|++.++.+++--+.....++|...++++..    .++ + .-.| ++.+|+.|+..|-
T Consensus       339 vE~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~~Lad~vi~svid~~~p----~e~-~-~aWHgacLaLAELA~rGl  412 (1133)
T KOG1943|consen  339 VEFVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPPELADQVIGSVIDLFNP----AED-D-SAWHGACLALAELALRGL  412 (1133)
T ss_pred             HHHHHHHHHHhccCCcchhhHHHHHHHHHHHccCcHHHHHHHHHHHHHhcCc----CCc-h-hHHHHHHHHHHHHHhcCC
Confidence            5567778888888999999999999999999333344444488999986664    442 2 3444 8899999998542


Q ss_pred             chhHHHHHhcCCHHHHHhcCC--------CCCHHHHHHHHHHHHHHhccChhh--HHHHHHcCCHHHHHHHhcCCChHHH
Q 044999           87 GALATEIGQSGVINSVLRLFP--------QSDDSFRTVLVKCLRVFVTFGNEN--RVIVARNGGLEIVIDLLNSCNDGTR  156 (461)
Q Consensus        87 ~~~~~~~~~~~~l~~L~~ll~--------~~~~~~~~~~~~~l~~l~~~~~~~--~~~~~~~g~i~~L~~ll~~~~~~~~  156 (461)
                      --.. .  -..+++.+++.|.        +....+|..+++.++.++......  +. +...=.-..++..+-+.+-++|
T Consensus       413 Llps-~--l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p-~l~~L~s~LL~~AlFDrevncR  488 (1133)
T KOG1943|consen  413 LLPS-L--LEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKP-VLQSLASALLIVALFDREVNCR  488 (1133)
T ss_pred             cchH-H--HHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhH-HHHHHHHHHHHHHhcCchhhHh
Confidence            1110 0  1124566665554        234567999999999888643222  22 2111112223334455666888


Q ss_pred             HHHHHHHHHhhCChHHHHHHHhcCCHHHHHHHHcCC---CHHHHHHHHHHHHH-hhcCchhHHHHHhcCChHHHHHh-cc
Q 044999          157 RYLLEILSALALLREVRRVLICLGGLRYLVEAVSFG---SMVSRERACQAIGL-LAVTGRARRLLVELGVIPGLVEL-FH  231 (461)
Q Consensus       157 ~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~~l~~~---~~~~~~~a~~~L~~-l~~~~~~~~~~~~~~~i~~L~~l-l~  231 (461)
                      ..|..++....         .+.|-.|.=+.++.+.   +...|..+...+.. ++..+..+..+     +..++.. +.
T Consensus       489 RAAsAAlqE~V---------GR~~n~p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~-----f~~L~t~Kv~  554 (1133)
T KOG1943|consen  489 RAASAALQENV---------GRQGNFPHGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPV-----FNHLLTKKVC  554 (1133)
T ss_pred             HHHHHHHHHHh---------ccCCCCCCchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHH-----HHHHHhcccc
Confidence            88888876543         2222222112222222   22334443333332 22222222222     2222222 34


Q ss_pred             cCCHHHHHHHHHHHHHHhcCccchhhhhhcCCHHHHHHHhCCCChhHHHHHHHHHHHhccCccc---------HHHHH--
Q 044999          232 IGDWTTKLVAGNTLGVVAAHVEYITPVAEAGAIPLYAELLQGPDSTGKEISEDVFCILAVSEAN---------ANAIA--  300 (461)
Q Consensus       232 ~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~---------~~~i~--  300 (461)
                      +=+..+++.++.+|.+|+..   .......+.++.++....+.+...+.-+..+.+.+......         ...+.  
T Consensus       555 HWd~~irelaa~aL~~Ls~~---~pk~~a~~~L~~lld~~ls~~~~~r~g~~la~~ev~~~~~~l~~~~~~l~e~~i~~l  631 (1133)
T KOG1943|consen  555 HWDVKIRELAAYALHKLSLT---EPKYLADYVLPPLLDSTLSKDASMRHGVFLAAGEVIGALRKLEPVIKGLDENRIAGL  631 (1133)
T ss_pred             cccHHHHHHHHHHHHHHHHh---hHHhhcccchhhhhhhhcCCChHHhhhhHHHHHHHHHHhhhhhhhhhhhHHHHhhhh
Confidence            45789999999999998865   22233445678888888778877776655554444221111         11111  


Q ss_pred             -----HHHHHHhccC-CHHHHHHHHHHHHHhhCC-CCchhHHhhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcC
Q 044999          301 -----EHLVRILREG-DNEANAAAADVLWDLAGY-KHSVPVIRNSGAIPILVNLLRGENDEVREKVSGAIAQLSY  368 (461)
Q Consensus       301 -----~~l~~ll~~~-~~~~~~~a~~~L~~l~~~-~~~~~~l~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~  368 (461)
                           +...+.+..+ ..-.+...+..+.+++.+ ..........+.-..+.+.+..++ .++..+.+++..++.
T Consensus       632 ~~ii~~~~~~~~~rg~~~lmr~~~~~~Ie~~s~s~~~~~~~~v~e~~~~ll~~~l~~~n-~i~~~av~av~~l~s  705 (1133)
T KOG1943|consen  632 LSIIPPICDRYFYRGQGTLMRQATLKFIEQLSLSKDRLFQDFVIENWQMLLAQNLTLPN-QIRDAAVSAVSDLVS  705 (1133)
T ss_pred             hhhccHHHHHHhccchHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHhhcchH-HHHHHHHHHHHHHHH
Confidence                 2222222222 234455666777777744 333444444455555555664444 677777777777665

>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.09  E-value=0.0057  Score=60.16  Aligned_cols=279  Identities=17%  Similarity=0.110  Sum_probs=173.9

Q ss_pred             HHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHhcCCCCCHHHHHHHHHHHHHHhccChh
Q 044999           51 PILARLLGENNFSGNLTRSIQQAAAYCLKQIASQADGALATEIGQSGVINSVLRLFPQSDDSFRTVLVKCLRVFVTFGNE  130 (461)
Q Consensus        51 ~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~  130 (461)
                      ..|..+|.+    ..+  .....|+.-+..+.-. .+.....      .+..|+...+.+.++++..-.-+...++.+++
T Consensus        38 ~dL~~lLdS----nkd--~~KleAmKRIia~iA~-G~dvS~~------Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpd  104 (968)
T KOG1060|consen   38 DDLKQLLDS----NKD--SLKLEAMKRIIALIAK-GKDVSLL------FPAVVKNVASKNIEVKKLVYVYLLRYAEEQPD  104 (968)
T ss_pred             HHHHHHHhc----ccc--HHHHHHHHHHHHHHhc-CCcHHHH------HHHHHHHhhccCHHHHHHHHHHHHHHhhcCCC
Confidence            567788876    333  2333455554444443 3333333      37788888889999888777667777754432


Q ss_pred             hHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHhhCChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcC
Q 044999          131 NRVIVARNGGLEIVIDLLNSCNDGTRRYLLEILSALALLREVRRVLICLGGLRYLVEAVSFGSMVSRERACQAIGLLAVT  210 (461)
Q Consensus       131 ~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~  210 (461)
                      ..     .=.+..+-+-|+++++.+|..|+++|..+=      -.++..=.+-.+-+...+.++-+|..|+.++-.|-+-
T Consensus       105 LA-----LLSIntfQk~L~DpN~LiRasALRvlSsIR------vp~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsL  173 (968)
T KOG1060|consen  105 LA-----LLSINTFQKALKDPNQLIRASALRVLSSIR------VPMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSL  173 (968)
T ss_pred             ce-----eeeHHHHHhhhcCCcHHHHHHHHHHHHhcc------hhhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcC
Confidence            21     113777888999999999999999998762      2222221233344555677889999999999999877


Q ss_pred             chhHHHHHhcCChHHHHHhcccCCHHHHHHHHHHHHHHhcCccchhhhhhcCCHHHHHHHhCCCChhHHHHHHHHHHHhc
Q 044999          211 GRARRLLVELGVIPGLVELFHIGDWTTKLVAGNTLGVVAAHVEYITPVAEAGAIPLYAELLQGPDSTGKEISEDVFCILA  290 (461)
Q Consensus       211 ~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~  290 (461)
                      ++....    ..+..+-.+|.+.++.+.-.|+.+...+|-+   +-.++ ++-...++.++.+-+.--|...+.+|..-+
T Consensus       174 d~e~k~----qL~e~I~~LLaD~splVvgsAv~AF~evCPe---rldLI-HknyrklC~ll~dvdeWgQvvlI~mL~RYA  245 (968)
T KOG1060|consen  174 DPEQKD----QLEEVIKKLLADRSPLVVGSAVMAFEEVCPE---RLDLI-HKNYRKLCRLLPDVDEWGQVVLINMLTRYA  245 (968)
T ss_pred             ChhhHH----HHHHHHHHHhcCCCCcchhHHHHHHHHhchh---HHHHh-hHHHHHHHhhccchhhhhHHHHHHHHHHHH
Confidence            776332    1356666788888898888888888877743   22222 122455666665544433444444443332


Q ss_pred             cCc----------------------------------ccHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCchhHHh
Q 044999          291 VSE----------------------------------ANANAIAEHLVRILREGDNEANAAAADVLWDLAGYKHSVPVIR  336 (461)
Q Consensus       291 ~~~----------------------------------~~~~~i~~~l~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~l~  336 (461)
                      .+.                                  ..-..+.+..-.+|.+.++.+..+++++.+.++-..+      
T Consensus       246 R~~l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~n~sVVmA~aql~y~lAP~~~------  319 (968)
T KOG1060|consen  246 RHQLPDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSRNPSVVMAVAQLFYHLAPKNQ------  319 (968)
T ss_pred             HhcCCCccccccccccCcccccccccccccCCCcccCccHHHHHHhccHHHhcCCcHHHHHHHhHHHhhCCHHH------
Confidence            110                                  0011111334456678899999999999999985321      


Q ss_pred             hcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcC
Q 044999          337 NSGAIPILVNLLRGENDEVREKVSGAIAQLSY  368 (461)
Q Consensus       337 ~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~  368 (461)
                      ...+++.|+++|.+ +..+|...+..+..++.
T Consensus       320 ~~~i~kaLvrLLrs-~~~vqyvvL~nIa~~s~  350 (968)
T KOG1060|consen  320 VTKIAKALVRLLRS-NREVQYVVLQNIATISI  350 (968)
T ss_pred             HHHHHHHHHHHHhc-CCcchhhhHHHHHHHHh
Confidence            23457789998876 45566666666666665

>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []

Probab=98.04  E-value=0.0021  Score=61.86  Aligned_cols=125  Identities=18%  Similarity=0.062  Sum_probs=90.9

Q ss_pred             cChhhHHHHHHcCCHHHHHHHh----------cCCChHHHHHHHHHHHHhh-CChHHHHHHHhcCCHHHHHHHHcCC---
Q 044999          127 FGNENRVIVARNGGLEIVIDLL----------NSCNDGTRRYLLEILSALA-LLREVRRVLICLGGLRYLVEAVSFG---  192 (461)
Q Consensus       127 ~~~~~~~~~~~~g~i~~L~~ll----------~~~~~~~~~~a~~~L~~l~-~~~~~~~~~~~~~~l~~l~~~l~~~---  192 (461)
                      .++.+...+....++..|.++-          ...++.+...|+++|+|+. .++..|+.+.+.|+.+.+++.++..   
T Consensus        10 Rd~~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~~~Lk~~~~~   89 (446)
T PF10165_consen   10 RDPTGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLCERLKNYSDS   89 (446)
T ss_pred             cCcccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHHHccccc
Confidence            3334555555555566666654          3456789999999999999 7888999999999999999999877   


Q ss_pred             --CHHHHHHHHHHHHHhhcCchh-HHHHHh-cCChHHHHHhccc-----------------CCHHHHHHHHHHHHHHhcC
Q 044999          193 --SMVSRERACQAIGLLAVTGRA-RRLLVE-LGVIPGLVELFHI-----------------GDWTTKLVAGNTLGVVAAH  251 (461)
Q Consensus       193 --~~~~~~~a~~~L~~l~~~~~~-~~~~~~-~~~i~~L~~ll~~-----------------~~~~~~~~a~~~L~~l~~~  251 (461)
                        +.++.-...+.|.-++..... +..+.+ .+++..+...+..                 .+......++..+.|+..+
T Consensus        90 ~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKllFNit~~  169 (446)
T PF10165_consen   90 SQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILKLLFNITLH  169 (446)
T ss_pred             CCChhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHHHHHHhhhc
Confidence              678889999999888876665 555544 5777777765541                 1223455667777787766

It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.

>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis

Probab=98.02  E-value=0.0017  Score=59.28  Aligned_cols=266  Identities=14%  Similarity=0.142  Sum_probs=176.0

Q ss_pred             HHHHHHHHHHHhh-c-CCCchh-H---HHhhHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHhcCCchhHHHHHhcCC
Q 044999           25 ALQVKALTKLARV-S-KFAPQD-I---LAATIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQADGALATEIGQSGV   98 (461)
Q Consensus        25 ~~~~~a~~~l~~l-a-~~~~~~-~---l~~~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~   98 (461)
                      ++++.+...+..+ . ....++ .   +.+.+..+-..|..     +++.+-+...   ...|+.        .+...+.
T Consensus        14 ElVr~l~e~L~~L~~~~~~~~~k~~eeisK~L~~mK~IL~G-----~~e~ep~~e~---v~qLa~--------Ei~~~dl   77 (335)
T PF08569_consen   14 ELVRSLREALEKLDSKSDKKREKAQEEISKYLQQMKEILYG-----DGEPEPNPEQ---VAQLAQ--------EIYRSDL   77 (335)
T ss_dssp             HHHHHHHHHHHHHHSS-HHHHHHHHHHHHHHHHHHHHHHHS------SS----HHH---HHHHHH--------HHHHHTH
T ss_pred             HHHHHHHHHHHHhccccCcchhhHHHHHHHHHHHHHHHhcC-----CCCCCCCHHH---HHHHHH--------HHHHhCH
Confidence            5566666777777 2 222222 2   22256666666663     3333333332   344444        5667788


Q ss_pred             HHHHHhcCCCCCHHHHHHHHHHHHHHhccChhhH-----HHHHH--cCCHHHHHHHhcCCChHHHHHHHHHHHHhhCChH
Q 044999           99 INSVLRLFPQSDDSFRTVLVKCLRVFVTFGNENR-----VIVAR--NGGLEIVIDLLNSCNDGTRRYLLEILSALALLRE  171 (461)
Q Consensus        99 l~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~-----~~~~~--~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~  171 (461)
                      +..|+..|..-+.+.++.++..+.++.......+     ..+..  ...+..|+...+  ++++...+-..|..+..++.
T Consensus        78 l~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~--~~dial~~g~mlRec~k~e~  155 (335)
T PF08569_consen   78 LYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYE--NPDIALNCGDMLRECIKHES  155 (335)
T ss_dssp             HHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGG--STTTHHHHHHHHHHHTTSHH
T ss_pred             HHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhc--CccccchHHHHHHHHHhhHH
Confidence            9999999999999989988888887776433332     12222  123333333333  55677888889999999999


Q ss_pred             HHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCchh-HHHHHhc---CChHHHHHhcccCCHHHHHHHHHHHHH
Q 044999          172 VRRVLICLGGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRA-RRLLVEL---GVIPGLVELFHIGDWTTKLVAGNTLGV  247 (461)
Q Consensus       172 ~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~-~~~~~~~---~~i~~L~~ll~~~~~~~~~~a~~~L~~  247 (461)
                      ..+.+.....+..+++..+.++-++...|..++..+-..++. ...+...   .++.....++.+++--+++.++..|+.
T Consensus       156 l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqslkLL~e  235 (335)
T PF08569_consen  156 LAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQSLKLLGE  235 (335)
T ss_dssp             HHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHHHHHHHH
T ss_pred             HHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhhHHHHHH
Confidence            999999998999999999999999999999999986655544 4444442   456777889999999999999999999


Q ss_pred             HhcCccchhhhhh----cCCHHHHHHHhCCCChhHHHHHHHHHHHhccCcccHHHHH-------HHHHHHhc
Q 044999          248 VAAHVEYITPVAE----AGAIPLYAELLQGPDSTGKEISEDVFCILAVSEANANAIA-------EHLVRILR  308 (461)
Q Consensus       248 l~~~~~~~~~~~~----~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~i~-------~~l~~ll~  308 (461)
                      +-.+..+...+.+    ..-+..++.+|++.+..++..|--++.-+..+|.....+.       +.|+..+.
T Consensus       236 llldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp~K~~~I~~iL~~Nr~kLl~fl~  307 (335)
T PF08569_consen  236 LLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANPNKPPPIVDILIKNREKLLRFLK  307 (335)
T ss_dssp             HHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-SS-BHHHHHHHHHTHHHHHHHHH
T ss_pred             HHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHH
Confidence            9988666554332    3457778888999999999999988888866665433332       55666553

In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.

>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless

Probab=98.01  E-value=1.8e-05  Score=47.89  Aligned_cols=41  Identities=27%  Similarity=0.310  Sum_probs=38.1

Q ss_pred             ChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhc
Q 044999          169 LREVRRVLICLGGLRYLVEAVSFGSMVSRERACQAIGLLAV  209 (461)
Q Consensus       169 ~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~  209 (461)
                      +++++..+++.|+++.|+.++.+.+++++..|+++|+|++.
T Consensus         1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~   41 (41)
T PF00514_consen    1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLAA   41 (41)
T ss_dssp             SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence            46788999999999999999999999999999999999974

Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....

>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=98.00  E-value=0.00048  Score=60.18  Aligned_cols=222  Identities=16%  Similarity=0.126  Sum_probs=148.9

Q ss_pred             HHhcCCChHHHHHHHHHHHHhhCChHHHHHHHh-cCCHHHHHHHHcCC--CHHHHHHHHHHHHHhhcCchhHHHHHh-cC
Q 044999          146 DLLNSCNDGTRRYLLEILSALALLREVRRVLIC-LGGLRYLVEAVSFG--SMVSRERACQAIGLLAVTGRARRLLVE-LG  221 (461)
Q Consensus       146 ~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~-~~~l~~l~~~l~~~--~~~~~~~a~~~L~~l~~~~~~~~~~~~-~~  221 (461)
                      +++++-++-.+..|++++.++...++.|..+.. ..+-.++++.+++.  +.++|...+-+++.++.++...+.+-. ..
T Consensus       156 kl~Q~i~~lTrlfav~cl~~l~~~~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~~~~aqdi~K~~d  235 (432)
T COG5231         156 KLSQLIDFLTRLFAVSCLSNLEFDVEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFSKECAQDIDKMDD  235 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            344455667888999999999988888876654 44677888888876  568999999999999999887644333 33


Q ss_pred             ChHHHHHhcccC-CHHHHHHHHHHHHHHhcC--ccchhhhhhcCCHHHHHHHh-CC--CChhHHHHHHH---HHHH----
Q 044999          222 VIPGLVELFHIG-DWTTKLVAGNTLGVVAAH--VEYITPVAEAGAIPLYAELL-QG--PDSTGKEISED---VFCI----  288 (461)
Q Consensus       222 ~i~~L~~ll~~~-~~~~~~~a~~~L~~l~~~--~~~~~~~~~~g~i~~L~~ll-~~--~~~~~~~~a~~---~L~~----  288 (461)
                      .+..++.+.+.. ...+.+.++..+.|++..  ...-..+.-.|-+...++.+ ..  .+++++...-.   .|.+    
T Consensus       236 li~dli~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~~k~  315 (432)
T COG5231         236 LINDLIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQNTKK  315 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhhhh
Confidence            566777777643 556777888889998873  22222333333233344444 32  25554322111   1110    


Q ss_pred             hccCcc------------------------cHHHHH-------HHHHHHhccCCHH-HHHHHHHHHHHhh-CCCCchhHH
Q 044999          289 LAVSEA------------------------NANAIA-------EHLVRILREGDNE-ANAAAADVLWDLA-GYKHSVPVI  335 (461)
Q Consensus       289 l~~~~~------------------------~~~~i~-------~~l~~ll~~~~~~-~~~~a~~~L~~l~-~~~~~~~~l  335 (461)
                      ++..+.                        +..++.       ..|.+++++..+. ....|+.-+..+. ..|+....+
T Consensus       316 l~~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~~vl  395 (432)
T COG5231         316 LCIFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEINAVL  395 (432)
T ss_pred             hhHHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHHHHH
Confidence            111111                        111221       7777888877665 4556777777777 569999999


Q ss_pred             hhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhc
Q 044999          336 RNSGAIPILVNLLRGENDEVREKVSGAIAQLS  367 (461)
Q Consensus       336 ~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~  367 (461)
                      .+.|+-+.+++++++++++|+-.|+.++..+.
T Consensus       396 ~Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~i  427 (432)
T COG5231         396 SKYGVKEIIMNLINHDDDDVKFEALQALQTCI  427 (432)
T ss_pred             HHhhhHHHHHHHhcCCCchhhHHHHHHHHHHH
Confidence            99999999999999999999999998887654

>KOG2734 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.96  E-value=0.007  Score=55.57  Aligned_cols=252  Identities=12%  Similarity=0.121  Sum_probs=178.8

Q ss_pred             HHHHHHHHHhcCCchhHHHHHhcCCHHHHHhcCCCCCHHHHHHHHHHHHHHhcc-----Chhh----HHHHHHcCCHHHH
Q 044999           74 AAYCLKQIASQADGALATEIGQSGVINSVLRLFPQSDDSFRTVLVKCLRVFVTF-----GNEN----RVIVARNGGLEIV  144 (461)
Q Consensus        74 a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~l~~~-----~~~~----~~~~~~~g~i~~L  144 (461)
                      ..+-+.-++.  -+.....+++.++++.|+++|.+.|.++.......+..++..     +.+.    -..+++.++++.|
T Consensus       104 ~IQ~mhvlAt--~PdLYp~lveln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLL  181 (536)
T KOG2734|consen  104 IIQEMHVLAT--MPDLYPILVELNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALL  181 (536)
T ss_pred             HHHHHHhhhc--ChHHHHHHHHhccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHH
Confidence            6677777887  677778888999999999999999999877777777777652     2222    3455678888888


Q ss_pred             HHHhcCCCh------HHHHHHHHHHHHhh-CChHHHHHHHhcCCHHHHHHHHcCC--CHHHHHHHHHHHHHhhcCch-hH
Q 044999          145 IDLLNSCND------GTRRYLLEILSALA-LLREVRRVLICLGGLRYLVEAVSFG--SMVSRERACQAIGLLAVTGR-AR  214 (461)
Q Consensus       145 ~~ll~~~~~------~~~~~a~~~L~~l~-~~~~~~~~~~~~~~l~~l~~~l~~~--~~~~~~~a~~~L~~l~~~~~-~~  214 (461)
                      ++-++.-++      .-...++..+-|+. ..++....+++.|.+..|+.-+...  -..-...|..++.-+..+.+ ++
T Consensus       182 vqnveRLdEsvkeea~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~  261 (536)
T KOG2734|consen  182 VQNVERLDESVKEEADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENR  261 (536)
T ss_pred             HHHHHHhhhcchhhhhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhh
Confidence            887654443      33455677888888 6677788888888888777744433  23556788888888777776 47


Q ss_pred             HHHHhcCChHHHHHhcc---cC------CHHHHHHHHHHHHHHhcCccchhhhhhcCCHHHHHHHhCCCChhHHHHHHHH
Q 044999          215 RLLVELGVIPGLVELFH---IG------DWTTKLVAGNTLGVVAAHVEYITPVAEAGAIPLYAELLQGPDSTGKEISEDV  285 (461)
Q Consensus       215 ~~~~~~~~i~~L~~ll~---~~------~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~  285 (461)
                      ......+++..+++-+.   ..      ..+..+....+|+.+-..+.++..+....++....-+++. ....+..++++
T Consensus       262 ~~~~~l~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~~EGlqLm~Lmlr~-Kk~sr~Salkv  340 (536)
T KOG2734|consen  262 KLLGPLDGIDVLLRQLAVYKRHDPATVDEEEMMENLFDCLCSLLMAPANRERFLKGEGLQLMNLMLRE-KKVSRGSALKV  340 (536)
T ss_pred             hhhcCcccHHHHHhhcchhhccCCCCcCHHHHHHHHHHHHHHHhcChhhhhhhhccccHHHHHHHHHH-HHHhhhhHHHH
Confidence            77888889998888765   22      2456778888888888889999999998778776666665 55667788889


Q ss_pred             HHHhccCccc---HHHHH-----HHHHHHh-ccC---------CHHHHHHHHHHHHHhhCC
Q 044999          286 FCILAVSEAN---ANAIA-----EHLVRIL-REG---------DNEANAAAADVLWDLAGY  328 (461)
Q Consensus       286 L~~l~~~~~~---~~~i~-----~~l~~ll-~~~---------~~~~~~~a~~~L~~l~~~  328 (461)
                      |-....+++.   +..++     ..+...+ +.+         ..+.-+..+.+|+.+-.+
T Consensus       341 Ld~am~g~~gt~~C~kfVe~lGLrtiF~~FMk~p~k~~~~~~t~~e~eEhv~siiaSl~~~  401 (536)
T KOG2734|consen  341 LDHAMFGPEGTPNCNKFVEILGLRTIFPLFMKTPLKRKKRKISADEHEEHVCSILASLLRN  401 (536)
T ss_pred             HHHHHhCCCchHHHHHHHHHHhHHHHHHHHhhCccchhcccCcHHHHHHHHHHHHHHHHHh
Confidence            9888777664   43433     3333332 222         234556777777777643

>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins

Probab=97.91  E-value=0.021  Score=54.80  Aligned_cols=339  Identities=14%  Similarity=0.084  Sum_probs=186.9

Q ss_pred             HHHHHHHhhcCCH---HHHHHHHHHHHhhc-CCCchhHHHh-hHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHhcCC
Q 044999           12 FNRFEQAVVSGSE---ALQVKALTKLARVS-KFAPQDILAA-TIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQAD   86 (461)
Q Consensus        12 ~~~l~~ll~~~~~---~~~~~a~~~l~~la-~~~~~~~l~~-~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~   86 (461)
                      +|.+...+.+.+.   ........+|..++ +...-+.+.. .+..+-...+.    +. +.+.-...+.+|..+.....
T Consensus         1 ~p~ll~~Lpd~~~~~~~~~~~~L~~l~~ls~~~~i~~~~~~~ll~kl~~~~~~----~~-~~~~~~~il~tl~~~~~~~~   75 (415)
T PF12460_consen    1 LPALLALLPDSDSSTDSNYERILEALAALSTSPQILETLSIRLLNKLSIVCQS----ES-SSDYCHAILSTLQSLLEKKQ   75 (415)
T ss_pred             CchHHhhCCCCCCcchhHHHHHHHHHHHHHCChhHHHHHHHHHHHHHHHHhcC----CC-ChHHHHHHHHHHHHHHHhcc
Confidence            3566777776654   56777888899998 5544333322 55555555553    22 44455668888888876421


Q ss_pred             chh----HHHHHhcCCHHHHHhcCC-----CC--CHHHHHHHHHHHHHHhc-cChhhHHHHHHcCCHHHHHH-----Hh-
Q 044999           87 GAL----ATEIGQSGVINSVLRLFP-----QS--DDSFRTVLVKCLRVFVT-FGNENRVIVARNGGLEIVID-----LL-  148 (461)
Q Consensus        87 ~~~----~~~~~~~~~l~~L~~ll~-----~~--~~~~~~~~~~~l~~l~~-~~~~~~~~~~~~g~i~~L~~-----ll-  148 (461)
                      ...    -....+...++.+.++.-     ..  ++.+...++..+..+.. -+.+.++.+.+ .....+..     -+ 
T Consensus        76 ~~~~~~~~~~y~~~~lv~~l~~~~~~~~~~~~~~~~~~L~~~~~l~~~iv~~l~~~~q~~~~~-~~~~lf~~~~~~~~~~  154 (415)
T PF12460_consen   76 EDKQFEDNSWYFHRILVPRLFELALQASDQSSDLDDRVLELLSRLINLIVRSLSPEKQQEILD-ELYSLFLSPKSFSPFQ  154 (415)
T ss_pred             cccccchHHHHHHhHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHhCCHHHHHHHHH-HHHHHHccccccCCCC
Confidence            111    122223336666665542     11  24444555555554443 23333444422 12222220     00 


Q ss_pred             -cCC-----ChHHHHHHHHHHHHhhCChHHHHHHHhcCCHHHHHHHHcCC-CHHHHHHHHHHHHHhhcCchhHHHHHhcC
Q 044999          149 -NSC-----NDGTRRYLLEILSALALLREVRRVLICLGGLRYLVEAVSFG-SMVSRERACQAIGLLAVTGRARRLLVELG  221 (461)
Q Consensus       149 -~~~-----~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~~l~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~  221 (461)
                       ...     ......-...++..+-.+-... ..  ...+..++.+..+. ++..+..++.+++.+....+....+-  .
T Consensus       155 ~~~~~~~~~~~~~~~l~~~il~~l~~~~~~~-~~--~~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~~l~--~  229 (415)
T PF12460_consen  155 PSSSTISEQQSRLVILFSAILCSLRKDVSLP-DL--EELLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDDDLD--E  229 (415)
T ss_pred             ccccccccccccHHHHHHHHHHcCCcccCcc-CH--HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChhhHH--H
Confidence             000     0111112223333333211111 11  12566677766544 67889999999998887643322111  1


Q ss_pred             ChHHHHHhc-ccCCHHHHHHHHHHHHHHhcC-----ccchhhhhhcCCHHHHHHHhCCCChhHHHHHHHHHHHhccC-cc
Q 044999          222 VIPGLVELF-HIGDWTTKLVAGNTLGVVAAH-----VEYITPVAEAGAIPLYAELLQGPDSTGKEISEDVFCILAVS-EA  294 (461)
Q Consensus       222 ~i~~L~~ll-~~~~~~~~~~a~~~L~~l~~~-----~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~-~~  294 (461)
                      .+..+...+ ...+...+..+...+..++..     .+...     ..+..|++++.+  +++...++..+.-+..+ ++
T Consensus       230 ~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~~-----~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~  302 (415)
T PF12460_consen  230 FLDSLLQSISSSEDSELRPQALEILIWITKALVMRGHPLAT-----ELLDKLLELLSS--PELGQQAAKAFGILLSDSDD  302 (415)
T ss_pred             HHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCchHH-----HHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHH
Confidence            334444333 233344444444444444332     22222     236778888876  67777888888877555 32


Q ss_pred             c-------------HHHHH----HHHHHHhccCCHHHHHHHHHHHHHhhCCCCchhHHh-hcCCHHHHHHhhcCCCHHHH
Q 044999          295 N-------------ANAIA----EHLVRILREGDNEANAAAADVLWDLAGYKHSVPVIR-NSGAIPILVNLLRGENDEVR  356 (461)
Q Consensus       295 ~-------------~~~i~----~~l~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~l~-~~g~i~~L~~ll~~~~~~v~  356 (461)
                      .             ++++.    |.+++..+..+.+.+...+.+|.++..+-...-.+- -...+|.|++-|..++++++
T Consensus       303 ~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~  382 (415)
T PF12460_consen  303 VLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVL  382 (415)
T ss_pred             hcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHH
Confidence            2             22332    788888888777788899999999987633221211 23478999999999999999


Q ss_pred             HHHHHHHHHhcC
Q 044999          357 EKVSGAIAQLSY  368 (461)
Q Consensus       357 ~~a~~~L~~l~~  368 (461)
                      ..++.+|..+..
T Consensus       383 ~s~L~tL~~~l~  394 (415)
T PF12460_consen  383 LSSLETLKMILE  394 (415)
T ss_pred             HHHHHHHHHHHH
Confidence            999999999987

MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].

>KOG0915 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.89  E-value=0.0024  Score=67.05  Aligned_cols=298  Identities=13%  Similarity=0.076  Sum_probs=155.8

Q ss_pred             HHHHHhcCCCCCHHHHHHHHHHHHHHhccChhhHHHH-HHcCCHHHHHHHhcCCChHHHHHHHHHHHHhh--CChHHHHH
Q 044999           99 INSVLRLFPQSDDSFRTVLVKCLRVFVTFGNENRVIV-ARNGGLEIVIDLLNSCNDGTRRYLLEILSALA--LLREVRRV  175 (461)
Q Consensus        99 l~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~-~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~--~~~~~~~~  175 (461)
                      ...+...+.+++|..|...+..+..+...-...+... ....+..++..+|.+.|+-+|..|.+.++-+-  .+.+.++.
T Consensus       820 ~~~l~~~~~s~nph~R~A~~VWLLs~vq~l~~~~~v~l~~~eI~~aF~~~Lsd~dEf~QDvAsrGlglVYelgd~~~k~~  899 (1702)
T KOG0915|consen  820 LKLLDTLLTSPNPHERQAGCVWLLSLVQYLGQQPEVVLMLKEIQEAFSHLLSDNDEFSQDVASRGLGLVYELGDSSLKKS  899 (1702)
T ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhhhccHHHHHHHHHHhcccHHHHHHHHhcCceEEEecCCchhHHH
Confidence            3445567788899887776655554443221111111 12223477888888877766666665444332  22222222


Q ss_pred             HHh------------------------cC---------CHHH---HH----------------HHHcCC-CHHHHHHHHH
Q 044999          176 LIC------------------------LG---------GLRY---LV----------------EAVSFG-SMVSRERACQ  202 (461)
Q Consensus       176 ~~~------------------------~~---------~l~~---l~----------------~~l~~~-~~~~~~~a~~  202 (461)
                      +++                        .|         .+.+   |+                ++-+|. .+.-+..|+.
T Consensus       900 LV~sL~~tl~~Gkr~~~~vs~eTelFq~G~Lg~Tp~Gg~isTYKELc~LASdl~qPdLVYKFM~LAnh~A~wnSk~GaAf  979 (1702)
T KOG0915|consen  900 LVDSLVNTLTGGKRKAIKVSEETELFQEGTLGKTPDGGKISTYKELCNLASDLGQPDLVYKFMQLANHNATWNSKKGAAF  979 (1702)
T ss_pred             HHHHHHHHHhccccccceeccchhcccCCcCCCCCCCCcchHHHHHHHHHhhcCChHHHHHHHHHhhhhchhhcccchhh
Confidence            221                        11         1111   11                111111 2223344444


Q ss_pred             HHHHhhcCchhHHHHHhcCChHHHHHhcccCCHHHHHHHHHHHHHHhcCccchhhhhhcCCHHHHHHHhCCCChhHHHHH
Q 044999          203 AIGLLAVTGRARRLLVELGVIPGLVELFHIGDWTTKLVAGNTLGVVAAHVEYITPVAEAGAIPLYAELLQGPDSTGKEIS  282 (461)
Q Consensus       203 ~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a  282 (461)
                      -++.++.....+..-.-...+|.|...=-+++..++..-......|..++..-..-.-..++.-|+.-+.+..+.+|+.+
T Consensus       980 Gf~~i~~~a~~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~neIl~eLL~~lt~kewRVReas 1059 (1702)
T KOG0915|consen  980 GFGAIAKQAGEKLEPYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDEYLNEILDELLVNLTSKEWRVREAS 1059 (1702)
T ss_pred             chHHHHHHHHHhhhhHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhccchhHHHHHHH
Confidence            44555444333111111236777777777888888875554444444332221111123557778888888899999999


Q ss_pred             HHHHHHhccCcccHHHHH------HHHHHHhccCCHHHHHHH---HHHHHHhhC---CC---CchhHHhhcCCHHHHHHh
Q 044999          283 EDVFCILAVSEANANAIA------EHLVRILREGDNEANAAA---ADVLWDLAG---YK---HSVPVIRNSGAIPILVNL  347 (461)
Q Consensus       283 ~~~L~~l~~~~~~~~~i~------~~l~~ll~~~~~~~~~~a---~~~L~~l~~---~~---~~~~~l~~~g~i~~L~~l  347 (461)
                      +.+|..|-...+.....-      ..+.+.+.+-.+.+|+.|   +.+|..++.   +.   .....+. ..++|.|++-
T Consensus      1060 clAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l-~~iLPfLl~~ 1138 (1702)
T KOG0915|consen 1060 CLALADLLQGRPFDQVKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLCVRICDVTNGAKGKEAL-DIILPFLLDE 1138 (1702)
T ss_pred             HHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHH-HHHHHHHhcc
Confidence            999999977666543332      344444444456677644   555555552   11   1111111 1244554431


Q ss_pred             -hcCCCHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhccCCCHHHH
Q 044999          348 -LRGENDEVREKVSGAIAQLSYNEADRVALADAGAVPIMIELLHDESEELR  397 (461)
Q Consensus       348 -l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~  397 (461)
                       ..+.-++++..++.++..|+.+....-.-.-...+|.|++....-.+.+.
T Consensus      1139 gims~v~evr~~si~tl~dl~Kssg~~lkP~~~~LIp~ll~~~s~lE~~vL 1189 (1702)
T KOG0915|consen 1139 GIMSKVNEVRRFSIGTLMDLAKSSGKELKPHFPKLIPLLLNAYSELEPQVL 1189 (1702)
T ss_pred             CcccchHHHHHHHHHHHHHHHHhchhhhcchhhHHHHHHHHHccccchHHH
Confidence             12456889999999999999843321111112357777777755444443

>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.88  E-value=0.0055  Score=59.95  Aligned_cols=320  Identities=9%  Similarity=0.078  Sum_probs=197.3

Q ss_pred             cHHHhHHHHHHHhhcCCHHHHHHHHHHHHhhc-CCCchhHHHh-hHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHhc
Q 044999            7 NWEEAFNRFEQAVVSGSEALQVKALTKLARVS-KFAPQDILAA-TIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQ   84 (461)
Q Consensus         7 ~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~la-~~~~~~~l~~-~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~   84 (461)
                      -.|..+|.+...+++....||++|..+++.+. +   -+.+.. +-..+-+.|.     .+.||...|.|...|...-. 
T Consensus       131 Llepl~p~IracleHrhsYVRrNAilaifsIyk~---~~~L~pDapeLi~~fL~-----~e~DpsCkRNAFi~L~~~D~-  201 (948)
T KOG1058|consen  131 LLEPLMPSIRACLEHRHSYVRRNAILAIFSIYKN---FEHLIPDAPELIESFLL-----TEQDPSCKRNAFLMLFTTDP-  201 (948)
T ss_pred             HhhhhHHHHHHHHhCcchhhhhhhheeehhHHhh---hhhhcCChHHHHHHHHH-----hccCchhHHHHHHHHHhcCH-
Confidence            36677788888888899999999988888777 3   111222 3333445555     34567788877665555443 


Q ss_pred             CCchhHHHHHhcCCHHHHHhcCCCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHH
Q 044999           85 ADGALATEIGQSGVINSVLRLFPQSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLNSCNDGTRRYLLEILS  164 (461)
Q Consensus        85 ~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~  164 (461)
                        +.....      +..-+.-..+-++..+......++..+..++.-+..+     +.-+..+|.+.++.++..|..+|.
T Consensus       202 --ErAl~Y------l~~~idqi~~~~~~LqlViVE~Irkv~~~~p~~~~~~-----i~~i~~lL~stssaV~fEaa~tlv  268 (948)
T KOG1058|consen  202 --ERALNY------LLSNIDQIPSFNDSLQLVIVELIRKVCLANPAEKARY-----IRCIYNLLSSTSSAVIFEAAGTLV  268 (948)
T ss_pred             --HHHHHH------HHhhHhhccCccHHHHHHHHHHHHHHHhcCHHHhhHH-----HHHHHHHHhcCCchhhhhhcceEE
Confidence              111111      1111222334456667777777777776565554444     556888999999999999999999


Q ss_pred             HhhCChHHHHHHHhcCCHHHHHHHHcCC-CHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhcccCCHHHHHHHHH
Q 044999          165 ALALLREVRRVLICLGGLRYLVEAVSFG-SMVSRERACQAIGLLAVTGRARRLLVELGVIPGLVELFHIGDWTTKLVAGN  243 (461)
Q Consensus       165 ~l~~~~~~~~~~~~~~~l~~l~~~l~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~  243 (461)
                      .++.++..-..-     ...+++++... +-.++...+.-|..+...+  ...+  .|.+--++..+.+++-+++..++.
T Consensus       269 ~lS~~p~alk~A-----a~~~i~l~~kesdnnvklIvldrl~~l~~~~--~~il--~~l~mDvLrvLss~dldvr~Ktld  339 (948)
T KOG1058|consen  269 TLSNDPTALKAA-----ASTYIDLLVKESDNNVKLIVLDRLSELKALH--EKIL--QGLIMDVLRVLSSPDLDVRSKTLD  339 (948)
T ss_pred             EccCCHHHHHHH-----HHHHHHHHHhccCcchhhhhHHHHHHHhhhh--HHHH--HHHHHHHHHHcCcccccHHHHHHH
Confidence            998777665443     33455555333 3345555555555554211  2222  235666778888999999999988


Q ss_pred             HHHHHhcCccchhhhhhcCCHHHHHH-HhCC------CChhHHHHHHHHHHHhc-cCcccHHHHHHHHHHHhccCCHHHH
Q 044999          244 TLGVVAAHVEYITPVAEAGAIPLYAE-LLQG------PDSTGKEISEDVFCILA-VSEANANAIAEHLVRILREGDNEAN  315 (461)
Q Consensus       244 ~L~~l~~~~~~~~~~~~~g~i~~L~~-ll~~------~~~~~~~~a~~~L~~l~-~~~~~~~~i~~~l~~ll~~~~~~~~  315 (461)
                      ....|..+.+.. .+     +..|.. +.+.      .+...|..-..++...+ ..++....+++.+++.+.+.++..-
T Consensus       340 i~ldLvssrNve-di-----v~~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~Fp~~aatvV~~ll~fisD~N~~aa  413 (948)
T KOG1058|consen  340 IALDLVSSRNVE-DI-----VQFLKKEVMKTHNEESDDNGKYRQLLIKTIHACAVKFPEVAATVVSLLLDFISDSNEAAA  413 (948)
T ss_pred             HHHhhhhhccHH-HH-----HHHHHHHHHhccccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHhccCCHHHH
Confidence            887777652221 11     112211 1111      23456777888888885 5566777777999999999988766


Q ss_pred             HHHHHHHHHhh-CCCCchhHHhhcCCHHHHHHhhc-CCCHHHHHHHHHHHHHhcC
Q 044999          316 AAAADVLWDLA-GYKHSVPVIRNSGAIPILVNLLR-GENDEVREKVSGAIAQLSY  368 (461)
Q Consensus       316 ~~a~~~L~~l~-~~~~~~~~l~~~g~i~~L~~ll~-~~~~~v~~~a~~~L~~l~~  368 (461)
                      ...+..+.... ..|..+..++.     .|++-+. -.+..+-+.++|.++.-|.
T Consensus       414 s~vl~FvrE~iek~p~Lr~~ii~-----~l~~~~~~irS~ki~rgalwi~GeYce  463 (948)
T KOG1058|consen  414 SDVLMFVREAIEKFPNLRASIIE-----KLLETFPQIRSSKICRGALWILGEYCE  463 (948)
T ss_pred             HHHHHHHHHHHHhCchHHHHHHH-----HHHHhhhhhcccccchhHHHHHHHHHh
Confidence            66666666555 34555444443     3333332 1345567788888888887

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]

Probab=97.85  E-value=0.00028  Score=61.78  Aligned_cols=180  Identities=14%  Similarity=0.069  Sum_probs=112.0

Q ss_pred             CCCCHHHHHHHHHHHHHHhccC--hhhHHHHHHc--CCHHHHHHHhcCCChHHHHHHHHHHHHhhCChHHHHHHHhcCCH
Q 044999          107 PQSDDSFRTVLVKCLRVFVTFG--NENRVIVARN--GGLEIVIDLLNSCNDGTRRYLLEILSALALLREVRRVLICLGGL  182 (461)
Q Consensus       107 ~~~~~~~~~~~~~~l~~l~~~~--~~~~~~~~~~--g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l  182 (461)
                      ++.++..+..+...+..+...+  ......+.+.  ..+..+...+.+....+...|+.++..++..-...-.-.-...+
T Consensus        17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l   96 (228)
T PF12348_consen   17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADILL   96 (228)
T ss_dssp             T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHHHH
T ss_pred             CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHH
Confidence            5678888999999999887655  2222333221  34556666677667788899999999988322221111123478


Q ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHhhcCchh-HHHHHhcCChHHHHHhcccCCHHHHHHHHHHHHHHhcC-ccchhhhhh
Q 044999          183 RYLVEAVSFGSMVSRERACQAIGLLAVTGRA-RRLLVELGVIPGLVELFHIGDWTTKLVAGNTLGVVAAH-VEYITPVAE  260 (461)
Q Consensus       183 ~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~-~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~  260 (461)
                      +.|+..+.+....++..|..+|..+...... ...     ..+.+...+.+.++.++..++..+..+... +.....+-.
T Consensus        97 ~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~-----~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~  171 (228)
T PF12348_consen   97 PPLLKKLGDSKKFIREAANNALDAIIESCSYSPKI-----LLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQK  171 (228)
T ss_dssp             HHHHHGGG---HHHHHHHHHHHHHHHTTS-H--HH-----HHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--
T ss_pred             HHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHH-----HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhcc
Confidence            9999999999999999999999999887662 221     156677778899999999999999888766 312222222


Q ss_pred             ----cCCHHHHHHHhCCCChhHHHHHHHHHHHhcc
Q 044999          261 ----AGAIPLYAELLQGPDSTGKEISEDVFCILAV  291 (461)
Q Consensus       261 ----~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~  291 (461)
                          ..+++.+...+.+.++++|..|-.++..+..
T Consensus       172 ~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~  206 (228)
T PF12348_consen  172 SAFLKQLVKALVKLLSDADPEVREAARECLWALYS  206 (228)
T ss_dssp             HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
Confidence                2357778888889999999988888887743

The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A

Probab=97.80  E-value=8.7e-05  Score=53.88  Aligned_cols=86  Identities=27%  Similarity=0.381  Sum_probs=68.0

Q ss_pred             HHHHHHHH-cCCCHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhcccCCHHHHHHHHHHHHHHhcCccchhhhhh
Q 044999          182 LRYLVEAV-SFGSMVSRERACQAIGLLAVTGRARRLLVELGVIPGLVELFHIGDWTTKLVAGNTLGVVAAHVEYITPVAE  260 (461)
Q Consensus       182 l~~l~~~l-~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~  260 (461)
                      ++.|++.+ +++++.+|..++.+|+++-          ....++.|+.+++++++.++..|+.+|+.+.          .
T Consensus         1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~----------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~----------~   60 (88)
T PF13646_consen    1 IPALLQLLQNDPDPQVRAEAARALGELG----------DPEAIPALIELLKDEDPMVRRAAARALGRIG----------D   60 (88)
T ss_dssp             HHHHHHHHHTSSSHHHHHHHHHHHHCCT----------HHHHHHHHHHHHTSSSHHHHHHHHHHHHCCH----------H
T ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHHcC----------CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------C
Confidence            57788988 7889999999999999551          2235899999999999999999999999873          2


Q ss_pred             cCCHHHHHHHhCCC-ChhHHHHHHHHHH
Q 044999          261 AGAIPLYAELLQGP-DSTGKEISEDVFC  287 (461)
Q Consensus       261 ~g~i~~L~~ll~~~-~~~~~~~a~~~L~  287 (461)
                      ...++.|.+++.++ +..++..|..+|+
T Consensus        61 ~~~~~~L~~~l~~~~~~~vr~~a~~aL~   88 (88)
T PF13646_consen   61 PEAIPALIKLLQDDDDEVVREAAAEALG   88 (88)
T ss_dssp             HHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence            34689999998876 4556887777763

>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.80  E-value=0.045  Score=53.93  Aligned_cols=278  Identities=14%  Similarity=0.128  Sum_probs=146.9

Q ss_pred             CHHHHHhcCCCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHH-HhcCCChHHHHHHHHHHHHhhCChHHHHHH
Q 044999           98 VINSVLRLFPQSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVID-LLNSCNDGTRRYLLEILSALALLREVRRVL  176 (461)
Q Consensus        98 ~l~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~-ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~  176 (461)
                      .+|.+...|.+..+.||+.|..++..+-...    ..+ --++.+.+-. +....|+..++.|.-.|...-  ++..-. 
T Consensus       135 l~p~IracleHrhsYVRrNAilaifsIyk~~----~~L-~pDapeLi~~fL~~e~DpsCkRNAFi~L~~~D--~ErAl~-  206 (948)
T KOG1058|consen  135 LMPSIRACLEHRHSYVRRNAILAIFSIYKNF----EHL-IPDAPELIESFLLTEQDPSCKRNAFLMLFTTD--PERALN-  206 (948)
T ss_pred             hHHHHHHHHhCcchhhhhhhheeehhHHhhh----hhh-cCChHHHHHHHHHhccCchhHHHHHHHHHhcC--HHHHHH-
Confidence            4566667777778888888777776444211    001 1112223333 334567777777776665432  111100 


Q ss_pred             HhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhcccCCHHHHHHHHHHHHHHhcCccchh
Q 044999          177 ICLGGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRARRLLVELGVIPGLVELFHIGDWTTKLVAGNTLGVVAAHVEYIT  256 (461)
Q Consensus       177 ~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~  256 (461)
                          .+..-+.-..+-++.++......+...+...+..+    ...++.+..+|.+.++.++..|+.+|.+++.++..-.
T Consensus       207 ----Yl~~~idqi~~~~~~LqlViVE~Irkv~~~~p~~~----~~~i~~i~~lL~stssaV~fEaa~tlv~lS~~p~alk  278 (948)
T KOG1058|consen  207 ----YLLSNIDQIPSFNDSLQLVIVELIRKVCLANPAEK----ARYIRCIYNLLSSTSSAVIFEAAGTLVTLSNDPTALK  278 (948)
T ss_pred             ----HHHhhHhhccCccHHHHHHHHHHHHHHHhcCHHHh----hHHHHHHHHHHhcCCchhhhhhcceEEEccCCHHHHH
Confidence                01111122223345566666666666665544411    1246778888887777888777777777776644333


Q ss_pred             hhhhcCCHHHHHHHhCCC-ChhHHHHHHHHHHHhc-cCcccHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCchhH
Q 044999          257 PVAEAGAIPLYAELLQGP-DSTGKEISEDVFCILA-VSEANANAIAEHLVRILREGDNEANAAAADVLWDLAGYKHSVPV  334 (461)
Q Consensus       257 ~~~~~g~i~~L~~ll~~~-~~~~~~~a~~~L~~l~-~~~~~~~~i~~~l~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~  334 (461)
                      ..     ...+++++... +-.++.-.+.-|..+. .+...-..++-.++..|.+++-+++..++.+...|+..... ..
T Consensus       279 ~A-----a~~~i~l~~kesdnnvklIvldrl~~l~~~~~~il~~l~mDvLrvLss~dldvr~Ktldi~ldLvssrNv-ed  352 (948)
T KOG1058|consen  279 AA-----ASTYIDLLVKESDNNVKLIVLDRLSELKALHEKILQGLIMDVLRVLSSPDLDVRSKTLDIALDLVSSRNV-ED  352 (948)
T ss_pred             HH-----HHHHHHHHHhccCcchhhhhHHHHHHHhhhhHHHHHHHHHHHHHHcCcccccHHHHHHHHHHhhhhhccH-HH
Confidence            22     34455554322 3333333333333332 11111122224455666778888999998888888765322 11


Q ss_pred             HhhcCCHHHHHHh-hc------CCCHHHHHHHHHHHHHhcC-ChhhHHHHHhCCChHHHHHhccCCCHHHHHHHHHHHHH
Q 044999          335 IRNSGAIPILVNL-LR------GENDEVREKVSGAIAQLSY-NEADRVALADAGAVPIMIELLHDESEELRDNAAESLIN  406 (461)
Q Consensus       335 l~~~g~i~~L~~l-l~------~~~~~v~~~a~~~L~~l~~-~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~  406 (461)
                      ++     ..|..- .+      +.+...|..-.+++..++. .|+....     .++.|++.+.+.++.........+..
T Consensus       353 iv-----~~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~Fp~~aat-----vV~~ll~fisD~N~~aas~vl~FvrE  422 (948)
T KOG1058|consen  353 IV-----QFLKKEVMKTHNEESDDNGKYRQLLIKTIHACAVKFPEVAAT-----VVSLLLDFISDSNEAAASDVLMFVRE  422 (948)
T ss_pred             HH-----HHHHHHHHhccccccccchHHHHHHHHHHHHHhhcChHHHHH-----HHHHHHHHhccCCHHHHHHHHHHHHH
Confidence            11     112111 11      1234467777888888887 6764443     37778888877666654444444443


Q ss_pred             h
Q 044999          407 F  407 (461)
Q Consensus       407 l  407 (461)
                      .
T Consensus       423 ~  423 (948)
T KOG1058|consen  423 A  423 (948)
T ss_pred             H
Confidence            3

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A

Probab=97.79  E-value=8.9e-05  Score=53.84  Aligned_cols=86  Identities=23%  Similarity=0.326  Sum_probs=68.8

Q ss_pred             HHHHHHHh-cCCChHHHHHHHHHHHHhhCChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCchhHHHHHh
Q 044999          141 LEIVIDLL-NSCNDGTRRYLLEILSALALLREVRRVLICLGGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRARRLLVE  219 (461)
Q Consensus       141 i~~L~~ll-~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~  219 (461)
                      ++.|++.+ ++.++.+|..++.+|..+.          ....++.++.+++++++.+|..++.+|+.+.          .
T Consensus         1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~----------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~----------~   60 (88)
T PF13646_consen    1 IPALLQLLQNDPDPQVRAEAARALGELG----------DPEAIPALIELLKDEDPMVRRAAARALGRIG----------D   60 (88)
T ss_dssp             HHHHHHHHHTSSSHHHHHHHHHHHHCCT----------HHHHHHHHHHHHTSSSHHHHHHHHHHHHCCH----------H
T ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHHcC----------CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------C
Confidence            57788888 8889999999999998552          1134889999999999999999999999882          3


Q ss_pred             cCChHHHHHhcccC-CHHHHHHHHHHHH
Q 044999          220 LGVIPGLVELFHIG-DWTTKLVAGNTLG  246 (461)
Q Consensus       220 ~~~i~~L~~ll~~~-~~~~~~~a~~~L~  246 (461)
                      ...++.|.+++.++ +..++..|..+|+
T Consensus        61 ~~~~~~L~~~l~~~~~~~vr~~a~~aL~   88 (88)
T PF13646_consen   61 PEAIPALIKLLQDDDDEVVREAAAEALG   88 (88)
T ss_dssp             HHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence            44889999988865 5556888887764

>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]

Probab=97.76  E-value=0.016  Score=55.20  Aligned_cols=286  Identities=15%  Similarity=0.118  Sum_probs=164.9

Q ss_pred             hHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHhcCCCCCHHHHHHHHHHHHHHhccC
Q 044999           49 TIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQADGALATEIGQSGVINSVLRLFPQSDDSFRTVLVKCLRVFVTFG  128 (461)
Q Consensus        49 ~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~l~~~~  128 (461)
                      ..|.|-..++.      .-..++..++++++.++.. +  ......+ ..+..|-.+|++.+...|-.|.+.+..++...
T Consensus       265 ~rpfL~~wls~------k~emV~lE~Ar~v~~~~~~-n--v~~~~~~-~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~  334 (898)
T COG5240         265 LRPFLNSWLSD------KFEMVFLEAARAVCALSEE-N--VGSQFVD-QTVSSLRTFLKSTRVVLRFSAMRILNQLAMKY  334 (898)
T ss_pred             HHHHHHHHhcC------cchhhhHHHHHHHHHHHHh-c--cCHHHHH-HHHHHHHHHHhcchHHHHHHHHHHHHHHHhhC
Confidence            33444455553      2234777788888888874 2  1111111 13566777788888877888888888777644


Q ss_pred             hhhHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHhhCChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhh
Q 044999          129 NENRVIVARNGGLEIVIDLLNSCNDGTRRYLLEILSALALLREVRRVLICLGGLRYLVEAVSFGSMVSRERACQAIGLLA  208 (461)
Q Consensus       129 ~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~  208 (461)
                      |+- ...    .-+.+-.+..+.+..+-..|+..|..-. .+++...+     +..+..+..+-+...+..+..++..|+
T Consensus       335 P~k-v~v----cN~evEsLIsd~Nr~IstyAITtLLKTG-t~e~idrL-----v~~I~sfvhD~SD~FKiI~ida~rsLs  403 (898)
T COG5240         335 PQK-VSV----CNKEVESLISDENRTISTYAITTLLKTG-TEETIDRL-----VNLIPSFVHDMSDGFKIIAIDALRSLS  403 (898)
T ss_pred             Cce-eee----cChhHHHHhhcccccchHHHHHHHHHcC-chhhHHHH-----HHHHHHHHHhhccCceEEeHHHHHHHH
Confidence            321 111    1122344556666667777777665543 23333332     233344444445566667777777777


Q ss_pred             cCchh-HHHHHhcCChHHHHHhcc-cCCHHHHHHHHHHHHHHhcC-ccchhhhhhcCCHHHHHHHhCCCChhHHHHHHHH
Q 044999          209 VTGRA-RRLLVELGVIPGLVELFH-IGDWTTKLVAGNTLGVVAAH-VEYITPVAEAGAIPLYAELLQGPDSTGKEISEDV  285 (461)
Q Consensus       209 ~~~~~-~~~~~~~~~i~~L~~ll~-~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~  285 (461)
                      ..-+. +..+     +..|...|. .+.-+.+..++.++..+..+ |+.++..     +..|+..+.+.  +..+-+..+
T Consensus       404 l~Fp~k~~s~-----l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~p~skEra-----Le~LC~fIEDc--ey~~I~vrI  471 (898)
T COG5240         404 LLFPSKKLSY-----LDFLGSSLLQEGGLEFKKYMVDAISDAMENDPDSKERA-----LEVLCTFIEDC--EYHQITVRI  471 (898)
T ss_pred             hhCcHHHHHH-----HHHHHHHHHhcccchHHHHHHHHHHHHHhhCchHHHHH-----HHHHHHHHhhc--chhHHHHHH
Confidence            76666 3332     344444333 45667777777787777666 5666655     56677776544  333344455


Q ss_pred             HHHhccCcc---cHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCchhHHhhcCCHHHHHHhhcCCCHHHHHHHHHH
Q 044999          286 FCILAVSEA---NANAIAEHLVRILREGDNEANAAAADVLWDLAGYKHSVPVIRNSGAIPILVNLLRGENDEVREKVSGA  362 (461)
Q Consensus       286 L~~l~~~~~---~~~~i~~~l~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~ll~~~~~~v~~~a~~~  362 (461)
                      |.-|....+   .....+.++.+-+--.+.-+|..|+.+|..++-+.+..  .....+...|.+.+.+.++++|..|..+
T Consensus       472 L~iLG~EgP~a~~P~~yvrhIyNR~iLEN~ivRsaAv~aLskf~ln~~d~--~~~~sv~~~lkRclnD~DdeVRdrAsf~  549 (898)
T COG5240         472 LGILGREGPRAKTPGKYVRHIYNRLILENNIVRSAAVQALSKFALNISDV--VSPQSVENALKRCLNDQDDEVRDRASFL  549 (898)
T ss_pred             HHHhcccCCCCCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHhccCcccc--ccHHHHHHHHHHHhhcccHHHHHHHHHH
Confidence            555532211   11222234444333456678889999998887542211  1112234567788999999999999999


Q ss_pred             HHHhcCC
Q 044999          363 IAQLSYN  369 (461)
Q Consensus       363 L~~l~~~  369 (461)
                      +.++-..
T Consensus       550 l~~~~~~  556 (898)
T COG5240         550 LRNMRLS  556 (898)
T ss_pred             HHhhhhh
Confidence            9988753

>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]

Probab=97.63  E-value=0.0057  Score=51.65  Aligned_cols=143  Identities=10%  Similarity=0.105  Sum_probs=113.5

Q ss_pred             HHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhcc-----cCCHHHHHHHHHHHHHHhcC--ccchhhhhhcCCHHHH
Q 044999          195 VSRERACQAIGLLAVTGRARRLLVELGVIPGLVELFH-----IGDWTTKLVAGNTLGVVAAH--VEYITPVAEAGAIPLY  267 (461)
Q Consensus       195 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~-----~~~~~~~~~a~~~L~~l~~~--~~~~~~~~~~g~i~~L  267 (461)
                      .-...++..+..++++++.+..|.+..+--.+..++.     .+.+..|..++++++.|...  .+.-..+...++||..
T Consensus        94 nRVcnaL~LlQcvASHpdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlC  173 (293)
T KOG3036|consen   94 NRVCNALALLQCVASHPDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLC  173 (293)
T ss_pred             chHHHHHHHHHHHhcCcchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHH
Confidence            3456788888888999999999999877666666665     33567888999999999887  4456677788999999


Q ss_pred             HHHhCCCChhHHHHHHHHHHHhccCcccHHHHH--------------HHHHHHhccCCHHHHHHHHHHHHHhhCCCCchh
Q 044999          268 AELLQGPDSTGKEISEDVFCILAVSEANANAIA--------------EHLVRILREGDNEANAAAADVLWDLAGYKHSVP  333 (461)
Q Consensus       268 ~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~i~--------------~~l~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~  333 (461)
                      +..+..++..-+..|..++..+-.++..-..+.              ..+.++.+.+++.....++++..+|+.++..+.
T Consensus       174 Lrime~GSelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdnprar~  253 (293)
T KOG3036|consen  174 LRIMESGSELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDNPRARA  253 (293)
T ss_pred             HHHHhcccHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHH
Confidence            999999999999999999998877776533222              555566677899999999999999999987776


Q ss_pred             HHhh
Q 044999          334 VIRN  337 (461)
Q Consensus       334 ~l~~  337 (461)
                      .+..
T Consensus       254 aL~~  257 (293)
T KOG3036|consen  254 ALRS  257 (293)
T ss_pred             HHHh
Confidence            6653

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=97.62  E-value=0.01  Score=61.20  Aligned_cols=278  Identities=14%  Similarity=0.023  Sum_probs=170.7

Q ss_pred             HHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHhcCCCCCHHHHHHHHHHHHHHhc---cChhhHHHHHHcCCHHHHHH
Q 044999           70 IQQAAAYCLKQIASQADGALATEIGQSGVINSVLRLFPQSDDSFRTVLVKCLRVFVT---FGNENRVIVARNGGLEIVID  146 (461)
Q Consensus        70 ~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~l~~---~~~~~~~~~~~~g~i~~L~~  146 (461)
                      ....|+..|..++..-++    ...-..++|.++-++.++..+||..|...+..+..   +-+..-..+...-.+|.|-.
T Consensus       439 tK~~ALeLl~~lS~~i~d----e~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP~L~~  514 (1431)
T KOG1240|consen  439 TKLAALELLQELSTYIDD----EVKLDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFPEYLFPHLNH  514 (1431)
T ss_pred             hHHHHHHHHHHHhhhcch----HHHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhhhhHh
Confidence            345588888888864222    22233468999999999999999999988884432   22233344444457888888


Q ss_pred             HhcC-CChHHHHHHHHHHHHhhCChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCchhHHHHHhcCChHH
Q 044999          147 LLNS-CNDGTRRYLLEILSALALLREVRRVLICLGGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRARRLLVELGVIPG  225 (461)
Q Consensus       147 ll~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~  225 (461)
                      ++.+ ....+|..-+..|..++..   .-.|.+.+.-.....++.+.+.+       ...+. ........+++ ++-+.
T Consensus       515 l~~d~~~~~vRiayAsnla~LA~t---A~rFle~~q~~~~~g~~n~~nse-------t~~~~-~~~~~~~~L~~-~V~~~  582 (1431)
T KOG1240|consen  515 LLNDSSAQIVRIAYASNLAQLAKT---AYRFLELTQELRQAGMLNDPNSE-------TAPEQ-NYNTELQALHH-TVEQM  582 (1431)
T ss_pred             hhccCccceehhhHHhhHHHHHHH---HHHHHHHHHHHHhcccccCcccc-------ccccc-ccchHHHHHHH-HHHHH
Confidence            8877 4445666666666666521   11122211111112223333322       00000 00111222222 23345


Q ss_pred             HHHhcccCCHHHHHHHHHHHHHHhcC--ccchhhhhhcCCHHHHHHHhCCCChhHHHHHHHHHHHhccCcc---cHHHHH
Q 044999          226 LVELFHIGDWTTKLVAGNTLGVVAAH--VEYITPVAEAGAIPLYAELLQGPDSTGKEISEDVFCILAVSEA---NANAIA  300 (461)
Q Consensus       226 L~~ll~~~~~~~~~~a~~~L~~l~~~--~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~---~~~~i~  300 (461)
                      ...++.++++-+++.-+..|.-||..  .....    .-+++.|+..|++.++.+|..-...+.-++..-.   ..+.+.
T Consensus       583 v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~ksN----D~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~rs~seyll  658 (1431)
T KOG1240|consen  583 VSSLLSDSPPIVKRALLESIIPLCVFFGKEKSN----DVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGWRSVSEYLL  658 (1431)
T ss_pred             HHHHHcCCchHHHHHHHHHHHHHHHHhhhcccc----cchHHHHHHHhcCccHHHHHHHHhhccceEEEEeeeeHHHHHH
Confidence            55677777778888877777777753  11111    1248889999999999998866666665543222   233444


Q ss_pred             HHHHHHhccCCHHHHHHHHHHHHHhhCCCCchhHHhhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcC
Q 044999          301 EHLVRILREGDNEANAAAADVLWDLAGYKHSVPVIRNSGAIPILVNLLRGENDEVREKVSGAIAQLSY  368 (461)
Q Consensus       301 ~~l~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~  368 (461)
                      |.+.+-|.++.+-|...|+++|..|+...-.++..+. .+++....+|-.++..+|..++..|...+.
T Consensus       659 PLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~~v~-~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~  725 (1431)
T KOG1240|consen  659 PLLQQGLTDGEEAVIVSALGSLSILIKLGLLRKPAVK-DILQDVLPLLCHPNLWIRRAVLGIIAAIAR  725 (1431)
T ss_pred             HHHHHhccCcchhhHHHHHHHHHHHHHhcccchHHHH-HHHHhhhhheeCchHHHHHHHHHHHHHHHh
Confidence            8888889999999999999999999876443333222 356667778888999999999998888876

>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]

Probab=97.60  E-value=0.0044  Score=61.93  Aligned_cols=166  Identities=17%  Similarity=0.131  Sum_probs=122.4

Q ss_pred             cccCCHHHHHHHHH-HHHHHhcCccchhhhhhcCCHHHHHHHhCCCChhHHHHHHHHHHHhccCcccHHHHH-HHHHHHh
Q 044999          230 FHIGDWTTKLVAGN-TLGVVAAHVEYITPVAEAGAIPLYAELLQGPDSTGKEISEDVFCILAVSEANANAIA-EHLVRIL  307 (461)
Q Consensus       230 l~~~~~~~~~~a~~-~L~~l~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~i~-~~l~~ll  307 (461)
                      +.+.+...+..|.. ++..++.+++....      .+.+++...+.+.++++..-.-|.+.+...+....+. +.+.+=+
T Consensus        28 l~s~n~~~kidAmK~iIa~M~~G~dmssL------f~dViK~~~trd~ElKrL~ylYl~~yak~~P~~~lLavNti~kDl  101 (757)
T COG5096          28 LESSNDYKKIDAMKKIIAQMSLGEDMSSL------FPDVIKNVATRDVELKRLLYLYLERYAKLKPELALLAVNTIQKDL  101 (757)
T ss_pred             ccccChHHHHHHHHHHHHHHhcCCChHHH------HHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhc
Confidence            55555555555543 55666665553332      4666666667889999888888888876665444444 8888888


Q ss_pred             ccCCHHHHHHHHHHHHHhhCCCCchhHHhhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcC-ChhhHHHHHhCCChHHHH
Q 044999          308 REGDNEANAAAADVLWDLAGYKHSVPVIRNSGAIPILVNLLRGENDEVREKVSGAIAQLSY-NEADRVALADAGAVPIMI  386 (461)
Q Consensus       308 ~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~-~~~~~~~~~~~~~i~~L~  386 (461)
                      .++++.+|..|+++++.+-..    +.  -...++.+.+++.++++.||+.|+-++..+-+ +++   .+.+.|.+..+.
T Consensus       102 ~d~N~~iR~~AlR~ls~l~~~----el--~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~~---l~~~~g~~~~l~  172 (757)
T COG5096         102 QDPNEEIRGFALRTLSLLRVK----EL--LGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDKD---LYHELGLIDILK  172 (757)
T ss_pred             cCCCHHHHHHHHHHHHhcChH----HH--HHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCHh---hhhcccHHHHHH
Confidence            999999999999988877321    11  12367788899999999999999999999886 544   566777788888


Q ss_pred             HhccCCCHHHHHHHHHHHHHhcCC
Q 044999          387 ELLHDESEELRDNAAESLINFSED  410 (461)
Q Consensus       387 ~ll~~~~~~~~~~a~~~L~~l~~~  410 (461)
                      .++.+.+|.+..+|..+|..+...
T Consensus       173 ~l~~D~dP~Vi~nAl~sl~~i~~e  196 (757)
T COG5096         173 ELVADSDPIVIANALASLAEIDPE  196 (757)
T ss_pred             HHhhCCCchHHHHHHHHHHHhchh
Confidence            888999999999999999988655

>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]

Probab=97.59  E-value=0.011  Score=50.11  Aligned_cols=147  Identities=16%  Similarity=0.126  Sum_probs=114.6

Q ss_pred             HHHHHHHHHHHHhhCChHHHHHHHhcCCHHHHHHHHcCC-----CHHHHHHHHHHHHHhhcCchh--HHHHHhcCChHHH
Q 044999          154 GTRRYLLEILSALALLREVRRVLICLGGLRYLVEAVSFG-----SMVSRERACQAIGLLAVTGRA--RRLLVELGVIPGL  226 (461)
Q Consensus       154 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~~l~~~-----~~~~~~~a~~~L~~l~~~~~~--~~~~~~~~~i~~L  226 (461)
                      .-...|+..+-.++.+++.+..|.+..+--.+-.+|...     .+-+|-.+++.++.+...++.  -..+...+++|..
T Consensus        94 nRVcnaL~LlQcvASHpdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlC  173 (293)
T KOG3036|consen   94 NRVCNALALLQCVASHPDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLC  173 (293)
T ss_pred             chHHHHHHHHHHHhcCcchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHH
Confidence            445678888888889999999999998766677777543     457899999999999988876  6677889999999


Q ss_pred             HHhcccCCHHHHHHHHHHHHHHhcCccchhhhhhc----CCH----H-HHHHHhCCCChhHHHHHHHHHHHhccCcccHH
Q 044999          227 VELFHIGDWTTKLVAGNTLGVVAAHVEYITPVAEA----GAI----P-LYAELLQGPDSTGKEISEDVFCILAVSEANAN  297 (461)
Q Consensus       227 ~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~----g~i----~-~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~  297 (461)
                      ++.+..+++..+..|...+..+-.++..-..+...    ..+    . .+..+.+.+++.+.++++++..+|+.++..+.
T Consensus       174 Lrime~GSelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdnprar~  253 (293)
T KOG3036|consen  174 LRIMESGSELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDNPRARA  253 (293)
T ss_pred             HHHHhcccHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHH
Confidence            99999999999999999999887775543333221    111    1 23344566788899999999999999987777


Q ss_pred             HHH
Q 044999          298 AIA  300 (461)
Q Consensus       298 ~i~  300 (461)
                      .+.
T Consensus       254 aL~  256 (293)
T KOG3036|consen  254 ALR  256 (293)
T ss_pred             HHH
Confidence            666

>KOG1248 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.59  E-value=0.089  Score=54.66  Aligned_cols=218  Identities=13%  Similarity=0.092  Sum_probs=136.2

Q ss_pred             hcCCChHHHHHHHHHHHHhhCChHHHHHHHhc--CCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCchh-HHHHHhcCChH
Q 044999          148 LNSCNDGTRRYLLEILSALALLREVRRVLICL--GGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRA-RRLLVELGVIP  224 (461)
Q Consensus       148 l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~--~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~-~~~~~~~~~i~  224 (461)
                      .++.+..+|..+.++|..++..+.........  .+...|.+-+++.....+...+.+|..+-...+. ...++.. .++
T Consensus       663 e~~~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k-~I~  741 (1176)
T KOG1248|consen  663 ENSSSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIPK-LIP  741 (1176)
T ss_pred             hccccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHHH-HHH
Confidence            34557899999999999999653332222111  2445556666666667788888888777655553 2222222 344


Q ss_pred             HHHHhcccCCHHHHHHHHHHHHHHhc--C--ccchhhhhhcCCHHHHHHHhCCC--ChhHHHHH--HHHHHHhcc-----
Q 044999          225 GLVELFHIGDWTTKLVAGNTLGVVAA--H--VEYITPVAEAGAIPLYAELLQGP--DSTGKEIS--EDVFCILAV-----  291 (461)
Q Consensus       225 ~L~~ll~~~~~~~~~~a~~~L~~l~~--~--~~~~~~~~~~g~i~~L~~ll~~~--~~~~~~~a--~~~L~~l~~-----  291 (461)
                      -++-.++..+...++.+..+|..++.  .  +...+.  ....+..++..+..+  ....+..+  +-++..+..     
T Consensus       742 EvIL~~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~--~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e~~~~  819 (1176)
T KOG1248|consen  742 EVILSLKEVNVKARRNAFALLVFIGAIQSSLDDGNEP--ASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQEFKNI  819 (1176)
T ss_pred             HHHHhcccccHHHHhhHHHHHHHHHHHHhhhcccccc--hHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHhcc
Confidence            44444478889999999999998882  1  111111  011244444444322  22222222  233333321     


Q ss_pred             -CcccHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhC-CCCchhHHhhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcC
Q 044999          292 -SEANANAIAEHLVRILREGDNEANAAAADVLWDLAG-YKHSVPVIRNSGAIPILVNLLRGENDEVREKVSGAIAQLSY  368 (461)
Q Consensus       292 -~~~~~~~i~~~l~~ll~~~~~~~~~~a~~~L~~l~~-~~~~~~~l~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~  368 (461)
                       +++....+.+.+.-+|.+++++++..|++.+..++. .|+..-.-.....++.+..++++.+..++.++-..|-.|.+
T Consensus       820 ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~LlekLir  898 (1176)
T KOG1248|consen  820 LDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKIKVRKKVRLLLEKLIR  898 (1176)
T ss_pred             ccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence             222334444778888899999999999999999984 46555555555688899999999888899888888888877

>smart00185 ARM Armadillo/beta-catenin-like repeats

Probab=97.56  E-value=0.00022  Score=43.05  Aligned_cols=40  Identities=40%  Similarity=0.626  Sum_probs=36.4

Q ss_pred             hhhHHHHHhCCChHHHHHhccCCCHHHHHHHHHHHHHhcC
Q 044999          370 EADRVALADAGAVPIMIELLHDESEELRDNAAESLINFSE  409 (461)
Q Consensus       370 ~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~  409 (461)
                      ++++..+.+.|+++.|++++++++++++..++++|.||+.
T Consensus         2 ~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~~   41 (41)
T smart00185        2 DEQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS   41 (41)
T ss_pred             cHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence            4578889999999999999999999999999999999973

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.

>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10

Probab=97.55  E-value=0.00038  Score=50.84  Aligned_cols=69  Identities=20%  Similarity=0.301  Sum_probs=57.1

Q ss_pred             HHHHHHHHHHHhcC-ChhhHHHHHhCCChHHHHHhc--cCCCHHHHHHHHHHHHHhcCCC-cchHHHHHhhCC
Q 044999          355 VREKVSGAIAQLSY-NEADRVALADAGAVPIMIELL--HDESEELRDNAAESLINFSEDP-LQHERISEAIGI  423 (461)
Q Consensus       355 v~~~a~~~L~~l~~-~~~~~~~~~~~~~i~~L~~ll--~~~~~~~~~~a~~~L~~l~~~~-~~~~~l~~~~~~  423 (461)
                      .+...+.+|+|++. ++.++..+.+.|++|.++...  .+.+|.+++.|.+++.||+... ++++.+.+....
T Consensus         2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~L~~~   74 (102)
T PF09759_consen    2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQLEPQ   74 (102)
T ss_pred             cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHhcccc
Confidence            35667889999999 999999999999999999976  4579999999999999998664 566666554433

Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B

Probab=97.51  E-value=0.00013  Score=47.49  Aligned_cols=55  Identities=27%  Similarity=0.235  Sum_probs=45.4

Q ss_pred             HHHHHHHHHHHHHhhCCCCchhHHhhcCCHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 044999          312 NEANAAAADVLWDLAGYKHSVPVIRNSGAIPILVNLLRGENDEVREKVSGAIAQL  366 (461)
Q Consensus       312 ~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l  366 (461)
                      |.+|..|+++|++++........-....+++.|..++.++++.||..|+++|++|
T Consensus         1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l   55 (55)
T PF13513_consen    1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL   55 (55)
T ss_dssp             HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred             CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence            5688899999999886644444445667899999999999999999999999875

...

>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []

Probab=97.44  E-value=0.011  Score=51.14  Aligned_cols=211  Identities=15%  Similarity=0.183  Sum_probs=143.9

Q ss_pred             CChHHHHHHHHHHHHhh-CChHHHHHHHhc-CCHHHHHHHH-------cCC--CH---HHHHHHHHHHHHhhcCchhHHH
Q 044999          151 CNDGTRRYLLEILSALA-LLREVRRVLICL-GGLRYLVEAV-------SFG--SM---VSRERACQAIGLLAVTGRARRL  216 (461)
Q Consensus       151 ~~~~~~~~a~~~L~~l~-~~~~~~~~~~~~-~~l~~l~~~l-------~~~--~~---~~~~~a~~~L~~l~~~~~~~~~  216 (461)
                      .+++.|+.|+.-|+.-- ..++....+... |.+..|++=+       ..+  +.   .-...|+..+..++.+++.+..
T Consensus         7 ~~~~~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAshpetr~~   86 (262)
T PF04078_consen    7 CNPETRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVASHPETRMP   86 (262)
T ss_dssp             SSHHHHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH-TTTHHH
T ss_pred             cCcchHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHcChHHHHH
Confidence            46778888888887776 445555555554 5555554422       111  12   3345777788889999999999


Q ss_pred             HHhcCChHHHHHhcccC-----CHHHHHHHHHHHHHHhcC--ccchhhhhhcCCHHHHHHHhCCCChhHHHHHHHHHHHh
Q 044999          217 LVELGVIPGLVELFHIG-----DWTTKLVAGNTLGVVAAH--VEYITPVAEAGAIPLYAELLQGPDSTGKEISEDVFCIL  289 (461)
Q Consensus       217 ~~~~~~i~~L~~ll~~~-----~~~~~~~a~~~L~~l~~~--~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l  289 (461)
                      |.+....-.|...+...     .+..+-.++++++.+...  ++.-..+....++|..+..+..++.-.+..|..++..+
T Consensus        87 Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAtfIlqKI  166 (262)
T PF04078_consen   87 FLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVATFILQKI  166 (262)
T ss_dssp             HHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred             HHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            99999888888888732     246788899999999875  56667788889999999999988888888888888887


Q ss_pred             ccCcccHHHHH--------------HHHHHHhccCCHHHHHHHHHHHHHhhCCCCchhHHhhcCCHHHHHHhhcC-----
Q 044999          290 AVSEANANAIA--------------EHLVRILREGDNEANAAAADVLWDLAGYKHSVPVIRNSGAIPILVNLLRG-----  350 (461)
Q Consensus       290 ~~~~~~~~~i~--------------~~l~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~ll~~-----  350 (461)
                      -.++.+-..+.              ..+..+.+..++.+.+..+++-..|+.++..++.+.+.  +|   ..+++     
T Consensus       167 L~dd~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnprar~aL~~~--LP---~~Lrd~~f~~  241 (262)
T PF04078_consen  167 LLDDVGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNPRAREALRQC--LP---DQLRDGTFSN  241 (262)
T ss_dssp             HHSHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTSTTHHHHHHHH--S----GGGTSSTTTT
T ss_pred             HcchhHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccCHHHHHHHHHh--Cc---HHHhcHHHHH
Confidence            66655432222              44444557779999999999999999999888887742  22   22222     


Q ss_pred             ---CCHHHHHHHHHHHHHh
Q 044999          351 ---ENDEVREKVSGAIAQL  366 (461)
Q Consensus       351 ---~~~~v~~~a~~~L~~l  366 (461)
                         .++.++..-...+.|+
T Consensus       242 ~l~~D~~~k~~l~qLl~nl  260 (262)
T PF04078_consen  242 ILKDDPSTKRWLQQLLSNL  260 (262)
T ss_dssp             GGCS-HHHHHHHHHHHHHT
T ss_pred             HHhcCHHHHHHHHHHHHHh
Confidence               3566666666655555

Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.

>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.42  E-value=0.16  Score=50.43  Aligned_cols=254  Identities=16%  Similarity=0.102  Sum_probs=127.1

Q ss_pred             HHHHHHHhcCCChHHHHHHHHHHHHhhC-ChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCchhHHHHHh
Q 044999          141 LEIVIDLLNSCNDGTRRYLLEILSALAL-LREVRRVLICLGGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRARRLLVE  219 (461)
Q Consensus       141 i~~L~~ll~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~  219 (461)
                      .+.+-..+++....+...|..++.++.. ....   +.  ..+..+--+++++...+|-.|.++|..++...+..-...+
T Consensus       247 ~~fl~s~l~~K~emV~~EaArai~~l~~~~~r~---l~--pavs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~v~~cN  321 (865)
T KOG1078|consen  247 FPFLESCLRHKSEMVIYEAARAIVSLPNTNSRE---LA--PAVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQAVTVCN  321 (865)
T ss_pred             HHHHHHHHhchhHHHHHHHHHHHhhccccCHhh---cc--hHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCccccccc
Confidence            4445557778888899999999988872 2221   11  1566677788888999999999999999877654222111


Q ss_pred             c------------CChHHHHHhcccCCHHHHHHHHHHHHHHhcC--ccchhhhh-------------hcCCHHHHHHHhC
Q 044999          220 L------------GVIPGLVELFHIGDWTTKLVAGNTLGVVAAH--VEYITPVA-------------EAGAIPLYAELLQ  272 (461)
Q Consensus       220 ~------------~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~--~~~~~~~~-------------~~g~i~~L~~ll~  272 (461)
                      .            -....+..+++.+.......-..-+.+...+  ++++-..+             ..+.+.-|..+|+
T Consensus       322 ~elE~lItd~NrsIat~AITtLLKTG~e~sv~rLm~qI~~fv~disDeFKivvvdai~sLc~~fp~k~~~~m~FL~~~Lr  401 (865)
T KOG1078|consen  322 LDLESLITDSNRSIATLAITTLLKTGTESSVDRLMKQISSFVSDISDEFKIVVVDAIRSLCLKFPRKHTVMMNFLSNMLR  401 (865)
T ss_pred             hhHHhhhcccccchhHHHHHHHHHhcchhHHHHHHHHHHHHHHhccccceEEeHHHHHHHHhhccHHHHHHHHHHHHHHH
Confidence            0            0122333344433333222222222222222  11111110             0112333333333


Q ss_pred             CC-ChhHHHHHHHHHHHhcc-CcccHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCchhHHhhcCCHHHHHHhhcC
Q 044999          273 GP-DSTGKEISEDVFCILAV-SEANANAIAEHLVRILREGDNEANAAAADVLWDLAGYKHSVPVIRNSGAIPILVNLLRG  350 (461)
Q Consensus       273 ~~-~~~~~~~a~~~L~~l~~-~~~~~~~i~~~l~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~ll~~  350 (461)
                      .+ .-+.+.....++..+.. +++.+......|...+.+.  +....+..+|.-|-..  +-........+..+...+.-
T Consensus       402 ~eGg~e~K~aivd~Ii~iie~~pdsKe~~L~~LCefIEDc--e~~~i~~rILhlLG~E--gP~a~~Pskyir~iyNRviL  477 (865)
T KOG1078|consen  402 EEGGFEFKRAIVDAIIDIIEENPDSKERGLEHLCEFIEDC--EFTQIAVRILHLLGKE--GPKAPNPSKYIRFIYNRVIL  477 (865)
T ss_pred             hccCchHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHhc--cchHHHHHHHHHHhcc--CCCCCCcchhhHHHhhhhhh
Confidence            22 22333333333333322 3333332223333332211  0111222233222211  00000111223334444444


Q ss_pred             CCHHHHHHHHHHHHHhcC-ChhhHHHHHhCCChHHHHHhccCCCHHHHHHHHHHHHHhc
Q 044999          351 ENDEVREKVSGAIAQLSY-NEADRVALADAGAVPIMIELLHDESEELRDNAAESLINFS  408 (461)
Q Consensus       351 ~~~~v~~~a~~~L~~l~~-~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~  408 (461)
                      .+..++..|..+|.++.. ++..+     ..+...|.+.+.+.+.++|..|...|.++.
T Consensus       478 En~ivRaaAv~alaKfg~~~~~l~-----~sI~vllkRc~~D~DdevRdrAtf~l~~l~  531 (865)
T KOG1078|consen  478 ENAIVRAAAVSALAKFGAQDVVLL-----PSILVLLKRCLNDSDDEVRDRATFYLKNLE  531 (865)
T ss_pred             hhhhhHHHHHHHHHHHhcCCCCcc-----ccHHHHHHHHhcCchHHHHHHHHHHHHHhh
Confidence            566788899999998885 33322     223556777888999999999999999987

>PF11841 DUF3361: Domain of unknown function (DUF3361)

Probab=97.40  E-value=0.0037  Score=49.69  Aligned_cols=119  Identities=10%  Similarity=0.094  Sum_probs=98.9

Q ss_pred             HHHHHcCCHHHHHHHhcCCC------hHHHHHHHHHHHHhhCChHHHHHHHhcCCHHHHHHHHcCC--CHHHHHHHHHHH
Q 044999          133 VIVARNGGLEIVIDLLNSCN------DGTRRYLLEILSALALLREVRRVLICLGGLRYLVEAVSFG--SMVSRERACQAI  204 (461)
Q Consensus       133 ~~~~~~g~i~~L~~ll~~~~------~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~~l~~~--~~~~~~~a~~~L  204 (461)
                      ..|...||+..|+++.+++.      .+....++.++..+-.+....+...+..++..++.+....  +..+...|+..|
T Consensus         5 ~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaIL   84 (160)
T PF11841_consen    5 QEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAIL   84 (160)
T ss_pred             HHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccccchHHHHHHHHH
Confidence            56788899999999998765      3677888999998887766677778888899999998766  578999999999


Q ss_pred             HHhhcCchh-HHHHHhcCChHHHHHhcccCCHHHHHHHHHHHHHHhcC
Q 044999          205 GLLAVTGRA-RRLLVELGVIPGLVELFHIGDWTTKLVAGNTLGVVAAH  251 (461)
Q Consensus       205 ~~l~~~~~~-~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~  251 (461)
                      .++..+++. ...+.+.=-++.|+..++..+++++..+...+-.|-..
T Consensus        85 Es~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~k  132 (160)
T PF11841_consen   85 ESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLK  132 (160)
T ss_pred             HHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhc
Confidence            999998888 66666677789999999999999999988666665544

>smart00185 ARM Armadillo/beta-catenin-like repeats

Probab=97.40  E-value=0.0004  Score=41.84  Aligned_cols=39  Identities=31%  Similarity=0.545  Sum_probs=35.6

Q ss_pred             CchhHHhhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcC
Q 044999          330 HSVPVIRNSGAIPILVNLLRGENDEVREKVSGAIAQLSY  368 (461)
Q Consensus       330 ~~~~~l~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~  368 (461)
                      +++..+.+.|+++.|++++.+++++++..++++|+|++.
T Consensus         3 ~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~~   41 (41)
T smart00185        3 EQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS   41 (41)
T ss_pred             HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence            467788899999999999999899999999999999973

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.

>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]

Probab=97.40  E-value=0.06  Score=46.32  Aligned_cols=203  Identities=20%  Similarity=0.227  Sum_probs=111.5

Q ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhcc--cCCHHHHHHHHHHHHHHhcCccchhhhh
Q 044999          182 LRYLVEAVSFGSMVSRERACQAIGLLAVTGRARRLLVELGVIPGLVELFH--IGDWTTKLVAGNTLGVVAAHVEYITPVA  259 (461)
Q Consensus       182 l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~--~~~~~~~~~a~~~L~~l~~~~~~~~~~~  259 (461)
                      +..+.+...+++...+...+.+|+..          .....++.++..+.  +..+-+|..|..+|+.+. .        
T Consensus        38 i~~i~ka~~d~s~llkhe~ay~LgQ~----------~~~~Av~~l~~vl~desq~pmvRhEAaealga~~-~--------   98 (289)
T KOG0567|consen   38 IKAITKAFIDDSALLKHELAYVLGQM----------QDEDAVPVLVEVLLDESQEPMVRHEAAEALGAIG-D--------   98 (289)
T ss_pred             HHHHHHhcccchhhhccchhhhhhhh----------ccchhhHHHHHHhcccccchHHHHHHHHHHHhhc-c--------
Confidence            33333433344334444445555444          23446677777666  334556667777777664 2        


Q ss_pred             hcCCHHHHHHHhCCCChhHHHHHHHHHHHhccCccc----------------HHHHH--HHHHHHh-ccCCH-HHHHHHH
Q 044999          260 EAGAIPLYAELLQGPDSTGKEISEDVFCILAVSEAN----------------ANAIA--EHLVRIL-REGDN-EANAAAA  319 (461)
Q Consensus       260 ~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~----------------~~~i~--~~l~~ll-~~~~~-~~~~~a~  319 (461)
                       ....+.+-+..+++...+++.+..++..+-.....                .....  ..+-..+ ....+ --+..|.
T Consensus        99 -~~~~~~l~k~~~dp~~~v~ETc~lAi~rle~~~~~~~~~~~~p~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~Ry~am  177 (289)
T KOG0567|consen   99 -PESLEILTKYIKDPCKEVRETCELAIKRLEWKDIIDKIANSSPYISVDPAPPANLSSVHELRAELLDETKPLFERYRAM  177 (289)
T ss_pred             -hhhHHHHHHHhcCCccccchHHHHHHHHHHHhhccccccccCccccCCCCCccccccHHHHHHHHHhcchhHHHHHhhh
Confidence             12234444555555566666655555554211100                00000  2222222 22222 2234555


Q ss_pred             HHHHHhhCCCCchhHHhhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhcc--CCCHHHH
Q 044999          320 DVLWDLAGYKHSVPVIRNSGAIPILVNLLRGENDEVREKVSGAIAQLSYNEADRVALADAGAVPIMIELLH--DESEELR  397 (461)
Q Consensus       320 ~~L~~l~~~~~~~~~l~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~--~~~~~~~  397 (461)
                      ..|+|+-..          ..+..|++-+...+.-.|..++.+++.|-...          .+|.|.+.|.  ..+|.+|
T Consensus       178 F~LRn~g~E----------eaI~al~~~l~~~SalfrhEvAfVfGQl~s~~----------ai~~L~k~L~d~~E~pMVR  237 (289)
T KOG0567|consen  178 FYLRNIGTE----------EAINALIDGLADDSALFRHEVAFVFGQLQSPA----------AIPSLIKVLLDETEHPMVR  237 (289)
T ss_pred             hHhhccCcH----------HHHHHHHHhcccchHHHHHHHHHHHhhccchh----------hhHHHHHHHHhhhcchHHH
Confidence            555555221          23555666677778888899999888886533          3788888774  4789999


Q ss_pred             HHHHHHHHHhcCCCcchHHHHHhhCCch
Q 044999          398 DNAAESLINFSEDPLQHERISEAIGIPS  425 (461)
Q Consensus       398 ~~a~~~L~~l~~~~~~~~~l~~~~~~~~  425 (461)
                      ..|+.+|..++. +++.+.|.+..+.+.
T Consensus       238 hEaAeALGaIa~-e~~~~vL~e~~~D~~  264 (289)
T KOG0567|consen  238 HEAAEALGAIAD-EDCVEVLKEYLGDEE  264 (289)
T ss_pred             HHHHHHHHhhcC-HHHHHHHHHHcCCcH
Confidence            999999998884 446666666554443

>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10

Probab=97.37  E-value=0.0015  Score=47.78  Aligned_cols=66  Identities=12%  Similarity=0.140  Sum_probs=58.4

Q ss_pred             HHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHhcCC--CCCHHHHHHHHHHHHHHhccChhhHHHHHHc
Q 044999           72 QAAAYCLKQIASQADGALATEIGQSGVINSVLRLFP--QSDDSFRTVLVKCLRVFVTFGNENRVIVARN  138 (461)
Q Consensus        72 ~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~ll~--~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~  138 (461)
                      +..+..+.+++.. +...++.+++.|+++.+++...  ..+|.++.++..++.+++..+++++..+.+.
T Consensus         4 ~~lvrlianl~~~-~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~L   71 (102)
T PF09759_consen    4 RDLVRLIANLCYK-NKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQL   71 (102)
T ss_pred             HHHHHHHHHHHhC-CHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHhc
Confidence            3467899999987 8999999999999999998765  5689999999999999999999999988754

Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].

>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis

Probab=97.36  E-value=0.019  Score=52.57  Aligned_cols=202  Identities=14%  Similarity=0.103  Sum_probs=148.3

Q ss_pred             HHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHhhCC-h-----HHHHHHHhc--CCHHHHHHHHcCCCHHHHHHHHHHH
Q 044999          133 VIVARNGGLEIVIDLLNSCNDGTRRYLLEILSALALL-R-----EVRRVLICL--GGLRYLVEAVSFGSMVSRERACQAI  204 (461)
Q Consensus       133 ~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~-~-----~~~~~~~~~--~~l~~l~~~l~~~~~~~~~~a~~~L  204 (461)
                      ..+...+.+..|+..|..-+.+.|..+..+..++... .     .....+...  .++..|+..-+  ++++-..+...|
T Consensus        70 ~Ei~~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~--~~dial~~g~ml  147 (335)
T PF08569_consen   70 QEIYRSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYE--NPDIALNCGDML  147 (335)
T ss_dssp             HHHHHHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGG--STTTHHHHHHHH
T ss_pred             HHHHHhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhc--CccccchHHHHH
Confidence            3444557788899999998999999999998888722 1     234445443  24444444333  556667778888


Q ss_pred             HHhhcCchhHHHHHhcCChHHHHHhcccCCHHHHHHHHHHHHHH-hcCccchhhhhhc---CCHHHHHHHhCCCChhHHH
Q 044999          205 GLLAVTGRARRLLVELGVIPGLVELFHIGDWTTKLVAGNTLGVV-AAHVEYITPVAEA---GAIPLYAELLQGPDSTGKE  280 (461)
Q Consensus       205 ~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l-~~~~~~~~~~~~~---g~i~~L~~ll~~~~~~~~~  280 (461)
                      +.+..+....+.+.....+..+.+.++.++-++...|..++..+ +.++.....+...   .++.....++.+++.-.+.
T Consensus       148 Rec~k~e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkr  227 (335)
T PF08569_consen  148 RECIKHESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKR  227 (335)
T ss_dssp             HHHTTSHHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHH
T ss_pred             HHHHhhHHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeeh
Confidence            88888887778888888999999999999999999999999874 4544444444433   4567788899999999999


Q ss_pred             HHHHHHHHhccCcccHHHHH---------HHHHHHhccCCHHHHHHHHHHHHHhhCCCCchhHHh
Q 044999          281 ISEDVFCILAVSEANANAIA---------EHLVRILREGDNEANAAAADVLWDLAGYKHSVPVIR  336 (461)
Q Consensus       281 ~a~~~L~~l~~~~~~~~~i~---------~~l~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~l~  336 (461)
                      .++..|+.+-.+..+...+.         ..++.+|++.+..++..|..++.-+..+|..-..+.
T Consensus       228 qslkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp~K~~~I~  292 (335)
T PF08569_consen  228 QSLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANPNKPPPIV  292 (335)
T ss_dssp             HHHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-SS-BHHHH
T ss_pred             hhHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCCCCChHHH
Confidence            99999999988888866554         778888999999999999999999998865544333

In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B

Probab=97.33  E-value=0.00042  Score=45.01  Aligned_cols=55  Identities=24%  Similarity=0.181  Sum_probs=46.1

Q ss_pred             HHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhcccCCHHHHHHHHHHHHHH
Q 044999          194 MVSRERACQAIGLLAVTGRARRLLVELGVIPGLVELFHIGDWTTKLVAGNTLGVV  248 (461)
Q Consensus       194 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l  248 (461)
                      +.+|..|+.+|++++...+....-....+++.|+.+++++++.++..|+++|++|
T Consensus         1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l   55 (55)
T PF13513_consen    1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL   55 (55)
T ss_dssp             HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred             CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence            4689999999999987777633335556899999999999999999999999875

...

>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=97.33  E-value=0.044  Score=48.39  Aligned_cols=213  Identities=9%  Similarity=0.037  Sum_probs=131.1

Q ss_pred             HHHHHHHHHhcCCchhHHHH-HhcCCHHHHHhcCCC--CCHHHHHHHHHHHHHHhccChhhHHHHHH-cCCHHHHHHHhc
Q 044999           74 AAYCLKQIASQADGALATEI-GQSGVINSVLRLFPQ--SDDSFRTVLVKCLRVFVTFGNENRVIVAR-NGGLEIVIDLLN  149 (461)
Q Consensus        74 a~~~L~~l~~~~~~~~~~~~-~~~~~l~~L~~ll~~--~~~~~~~~~~~~l~~l~~~~~~~~~~~~~-~g~i~~L~~ll~  149 (461)
                      |+.+|.++..  ..+.+..+ .+.-.-..++..++.  ++.+.|-....+++.++. ++++.+.+-+ .+.+..++++.+
T Consensus       169 av~cl~~l~~--~~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf-~~~~aqdi~K~~dli~dli~iVk  245 (432)
T COG5231         169 AVSCLSNLEF--DVEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTF-SKECAQDIDKMDDLINDLIAIVK  245 (432)
T ss_pred             HHHHHhhhhh--hHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHHHH
Confidence            8899999998  55544444 444455667777764  456677788888888874 4455544432 234556666665


Q ss_pred             CC-ChHHHHHHHHHHHHhhC--ChHHHHHHHhcCCHHHHHHHHcCC---CHHHHHHHHHHHHHhh---------------
Q 044999          150 SC-NDGTRRYLLEILSALAL--LREVRRVLICLGGLRYLVEAVSFG---SMVSRERACQAIGLLA---------------  208 (461)
Q Consensus       150 ~~-~~~~~~~a~~~L~~l~~--~~~~~~~~~~~~~l~~l~~~l~~~---~~~~~~~a~~~L~~l~---------------  208 (461)
                      .. ...+-+.++.++.+++.  .........-.|-+..-++.|...   +++++...-.+=..+-               
T Consensus       246 ~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~~k~l~~fD~Y~~E  325 (432)
T COG5231         246 ERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQNTKKLCIFDNYLNE  325 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhhhhhhHHHHHHHH
Confidence            43 34677888888888884  223333334444344445555432   4444332211111111               


Q ss_pred             -------cCc---------hhHHHHHh--cCChHHHHHhcccCCHH-HHHHHHHHHHHHhcC-ccchhhhhhcCCHHHHH
Q 044999          209 -------VTG---------RARRLLVE--LGVIPGLVELFHIGDWT-TKLVAGNTLGVVAAH-VEYITPVAEAGAIPLYA  268 (461)
Q Consensus       209 -------~~~---------~~~~~~~~--~~~i~~L~~ll~~~~~~-~~~~a~~~L~~l~~~-~~~~~~~~~~g~i~~L~  268 (461)
                             .++         .+...+.+  ...+..|.++++...+. ....||.-+..+... |+.+..+.+.|+=..+.
T Consensus       326 Ldsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~~vl~Kyg~k~~im  405 (432)
T COG5231         326 LDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEINAVLSKYGVKEIIM  405 (432)
T ss_pred             HhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHHHHHHHhhhHHHHH
Confidence                   111         11111111  23567778888866554 455677778777776 88899999999999999


Q ss_pred             HHhCCCChhHHHHHHHHHHHh
Q 044999          269 ELLQGPDSTGKEISEDVFCIL  289 (461)
Q Consensus       269 ~ll~~~~~~~~~~a~~~L~~l  289 (461)
                      +++.+++++++..|+.++.-+
T Consensus       406 ~L~nh~d~~VkfeAl~a~q~~  426 (432)
T COG5231         406 NLINHDDDDVKFEALQALQTC  426 (432)
T ss_pred             HHhcCCCchhhHHHHHHHHHH
Confidence            999999999999888877654

>PF11841 DUF3361: Domain of unknown function (DUF3361)

Probab=97.28  E-value=0.0096  Score=47.42  Aligned_cols=118  Identities=14%  Similarity=0.035  Sum_probs=96.3

Q ss_pred             HHHHHHhcCCHHHHHHHHcCCC------HHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhcccC--CHHHHHHHHH
Q 044999          172 VRRVLICLGGLRYLVEAVSFGS------MVSRERACQAIGLLAVTGRARRLLVELGVIPGLVELFHIG--DWTTKLVAGN  243 (461)
Q Consensus       172 ~~~~~~~~~~l~~l~~~l~~~~------~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~--~~~~~~~a~~  243 (461)
                      +..+|+..+|+..|++++.++.      .+....++.++..|..++-......+..++..++......  +..+...++.
T Consensus         3 FA~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLa   82 (160)
T PF11841_consen    3 FAQEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLA   82 (160)
T ss_pred             hHHHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccccchHHHHHHH
Confidence            3567899999999999998875      3677889999999988876555567777888998888844  5789999999


Q ss_pred             HHHHHhcCccc-hhhhhhcCCHHHHHHHhCCCChhHHHHHHHHHHHh
Q 044999          244 TLGVVAAHVEY-ITPVAEAGAIPLYAELLQGPDSTGKEISEDVFCIL  289 (461)
Q Consensus       244 ~L~~l~~~~~~-~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l  289 (461)
                      .|.++..+.+. ...+.+.=-++.|+..++..+++++.++...+-.|
T Consensus        83 ILEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL  129 (160)
T PF11841_consen   83 ILESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINAL  129 (160)
T ss_pred             HHHHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            99999988444 55555556689999999999999999998887766

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1

Probab=97.20  E-value=0.04  Score=45.90  Aligned_cols=161  Identities=10%  Similarity=0.045  Sum_probs=99.7

Q ss_pred             ChHHHHHHHHHHHHhh-CChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhc
Q 044999          152 NDGTRRYLLEILSALA-LLREVRRVLICLGGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRARRLLVELGVIPGLVELF  230 (461)
Q Consensus       152 ~~~~~~~a~~~L~~l~-~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll  230 (461)
                      ++.+|..++.+++.++ ..+...+     ..++.+...|.++++.+|..|+.+|..|...+-.+..   ...+..++.++
T Consensus         1 ~~~vR~n~i~~l~DL~~r~~~~ve-----~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k---~~l~~~~l~~l   72 (178)
T PF12717_consen    1 DPSVRNNAIIALGDLCIRYPNLVE-----PYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVK---GQLFSRILKLL   72 (178)
T ss_pred             CHHHHHHHHHHHHHHHHhCcHHHH-----hHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeeh---hhhhHHHHHHH
Confidence            4678999999999998 4443332     2478899999999999999999999999776544211   12347778888


Q ss_pred             ccCCHHHHHHHHHHHHHHhcCccchhhhhhcCCHHHHHHHhCCC---------ChhHHHHHHHHHHHhccCcccHHHHHH
Q 044999          231 HIGDWTTKLVAGNTLGVVAAHVEYITPVAEAGAIPLYAELLQGP---------DSTGKEISEDVFCILAVSEANANAIAE  301 (461)
Q Consensus       231 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~ll~~~---------~~~~~~~a~~~L~~l~~~~~~~~~i~~  301 (461)
                      .+++++++..|..++..+.... . ...+... ++.++.-+...         +.+-+......|......+..+..+.+
T Consensus        73 ~D~~~~Ir~~A~~~~~e~~~~~-~-~~~i~~~-~~e~i~~l~~~~~~~~~~~~~~~~~~~I~~fll~~i~~d~~~~~l~~  149 (178)
T PF12717_consen   73 VDENPEIRSLARSFFSELLKKR-N-PNIIYNN-FPELISSLNNCYEHPVYGPLSREKRKKIYKFLLDFIDKDKQKESLVE  149 (178)
T ss_pred             cCCCHHHHHHHHHHHHHHHHhc-c-chHHHHH-HHHHHHHHhCccccccccccCHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence            9999999999999999988752 1 1112222 34444434332         223333344444443333455555554


Q ss_pred             HHHHHh-ccC---CHHHHHHHHHHHH
Q 044999          302 HLVRIL-REG---DNEANAAAADVLW  323 (461)
Q Consensus       302 ~l~~ll-~~~---~~~~~~~a~~~L~  323 (461)
                      .+.+-+ ...   ++.+...+..+|.
T Consensus       150 kl~~~~~~~~~~~~~~~~~d~~~~l~  175 (178)
T PF12717_consen  150 KLCQRFLNAVVDEDERVLRDILYCLS  175 (178)
T ss_pred             HHHHHHHHHcccccHHHHHHHHHHHH
Confidence            444332 222   4555555555544

>KOG2032 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.13  E-value=0.067  Score=50.20  Aligned_cols=259  Identities=12%  Similarity=0.002  Sum_probs=139.0

Q ss_pred             HHHHhcCCCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHH-HhcCCChHHHHHHHHHHHHhhCCh---HHHHH
Q 044999          100 NSVLRLFPQSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVID-LLNSCNDGTRRYLLEILSALALLR---EVRRV  175 (461)
Q Consensus       100 ~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~-ll~~~~~~~~~~a~~~L~~l~~~~---~~~~~  175 (461)
                      ..+..-.++++..++..++.++.+.+...+.-....... .+..++. +....+.++...++.+|..+....   +....
T Consensus       261 ~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~-~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~~~  339 (533)
T KOG2032|consen  261 LSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTT-QLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDLESY  339 (533)
T ss_pred             HHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHH-HHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcchhhh
Confidence            333444556777788899999999887644433333322 2444444 556667789999998888877322   22222


Q ss_pred             HHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCchh--HHHHHh--cCChHHHHHhcccCCHHHHHHHHHHHHHHhcC
Q 044999          176 LICLGGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRA--RRLLVE--LGVIPGLVELFHIGDWTTKLVAGNTLGVVAAH  251 (461)
Q Consensus       176 ~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~--~~~~~~--~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~  251 (461)
                      ++  ++.-.+..+..+.++++|..+...++.|+.....  +..+.+  .+...+++-.+.++++.+-. ||+.....+..
T Consensus       340 ~l--~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~va~-ACr~~~~~c~p  416 (533)
T KOG2032|consen  340 LL--NIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPYVAR-ACRSELRTCYP  416 (533)
T ss_pred             ch--hHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChHHHH-HHHHHHHhcCc
Confidence            22  2345667788888999999999999998876654  334443  33445566666777776543 45555444432


Q ss_pred             ccchhhhhhcCCHHHHHHHhCCCC-hhHHHHHHHHHHHhc-cCcccHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhCC-
Q 044999          252 VEYITPVAEAGAIPLYAELLQGPD-STGKEISEDVFCILA-VSEANANAIAEHLVRILREGDNEANAAAADVLWDLAGY-  328 (461)
Q Consensus       252 ~~~~~~~~~~g~i~~L~~ll~~~~-~~~~~~a~~~L~~l~-~~~~~~~~i~~~l~~ll~~~~~~~~~~a~~~L~~l~~~-  328 (461)
                      .-.++..  .+.++..   + +.+ +..+..-...-..+. .+++.-.........++++.-+.++..+...-.++..+ 
T Consensus       417 ~l~rke~--~~~~q~~---l-d~~~~~~q~Fyn~~c~~L~~i~~d~l~~~~t~~~~~f~sswe~vr~aavl~t~~~vd~l  490 (533)
T KOG2032|consen  417 NLVRKEL--YHLFQES---L-DTDMARFQAFYNQWCIQLNHIHPDILMLLLTEDQHIFSSSWEQVREAAVLKTTRSVDSL  490 (533)
T ss_pred             hhHHHHH--HHHHhhh---h-HHhHHHHHHHHHHHHHHHhhhCHHHHHHHHHhchhheecchHHHHHHHHHHHHHHHHHh
Confidence            2222211  1111111   1 110 011110000001111 11111111113333444455556666666555555432 


Q ss_pred             -CCchhHHhhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcC
Q 044999          329 -KHSVPVIRNSGAIPILVNLLRGENDEVREKVSGAIAQLSY  368 (461)
Q Consensus       329 -~~~~~~l~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~  368 (461)
                       +..+...-..-....|-.+.+++.++++..+..++..+..
T Consensus       491 ~~~~c~~~d~~qL~~~ls~l~~dp~pev~~~a~~al~~l~~  531 (533)
T KOG2032|consen  491 VRAACSSADGLQLRSSLSTLWRDPRPEVTDSARKALDLLSV  531 (533)
T ss_pred             HHHHHHHhhHHHHHHHHHHHccCCCchhHHHHHHHhhhHhh
Confidence             2233332222345567777788999999999999887753

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=97.13  E-value=0.019  Score=57.38  Aligned_cols=155  Identities=17%  Similarity=0.200  Sum_probs=95.9

Q ss_pred             HHHhcCChHHHHHhccc--------CCHHHHHHHHHHHHHHhcCccchhhhhhc--------CCHHHHHHHhCC----CC
Q 044999          216 LLVELGVIPGLVELFHI--------GDWTTKLVAGNTLGVVAAHVEYITPVAEA--------GAIPLYAELLQG----PD  275 (461)
Q Consensus       216 ~~~~~~~i~~L~~ll~~--------~~~~~~~~a~~~L~~l~~~~~~~~~~~~~--------g~i~~L~~ll~~----~~  275 (461)
                      .+...+++..++++...        +..+....|+.+|.-+..-++.+..++..        .++..++..-..    .+
T Consensus       596 nflkls~v~~~L~l~~~~~~w~~~spR~d~~~~Al~vL~i~t~iP~iq~~La~~~~~n~~aydGiaIiL~~a~g~~~i~D  675 (1516)
T KOG1832|consen  596 NFLKLSGVVTMLELCQTPPVWRYLSPRHDLLQYALGVLHIVTSIPDIQKALAHATLSNNRAYDGIAIILDAANGSNSIVD  675 (1516)
T ss_pred             HHHHhHHHHHHHHHHhcCccccccCcchHHHHHHHhheeeeEecchHHHHHHHHHhhcccccCceEEEeecccccccccC
Confidence            34555666667766652        22355667777777766667777776643        123333333221    27


Q ss_pred             hhHHHHHHHHHHHhccCc-ccHHHHHHHHHH-------Hhc-cCCHHHHHHHHHHHHHhhCCCCchhHHhhcCCHHHHHH
Q 044999          276 STGKEISEDVFCILAVSE-ANANAIAEHLVR-------ILR-EGDNEANAAAADVLWDLAGYKHSVPVIRNSGAIPILVN  346 (461)
Q Consensus       276 ~~~~~~a~~~L~~l~~~~-~~~~~i~~~l~~-------ll~-~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~  346 (461)
                      ++++..|+.++.|+...+ +++......+..       .+. ....+..+..+.-.|+-         +...++|..|+.
T Consensus       676 pei~~~AL~vIincVc~pp~~r~s~i~~v~S~~g~~r~~l~~~~ks~~le~~l~~mw~~---------Vr~ndGIkiLl~  746 (1516)
T KOG1832|consen  676 PEIIQPALNVIINCVCPPPTTRPSTIVAVGSQSGDRRIFLGAGTKSAKLEQVLRQMWEA---------VRGNDGIKILLK  746 (1516)
T ss_pred             HHHHHHHHhhhheeecCCCCcchhhhhhccccCCCccccccCCCchHHHHHHHHHHHHH---------HhcCccHHHHHH
Confidence            899999999999997666 555444311111       111 11122333444444443         345688999999


Q ss_pred             hhcCCC-----HHHHHHHHHHHHHhcCChhhHHHHHhC
Q 044999          347 LLRGEN-----DEVREKVSGAIAQLSYNEADRVALADA  379 (461)
Q Consensus       347 ll~~~~-----~~v~~~a~~~L~~l~~~~~~~~~~~~~  379 (461)
                      +++-..     +.++..|+.+|..|++++..++.+.+.
T Consensus       747 Ll~~k~P~t~aD~IRalAc~~L~GLaR~~tVrQIltKL  784 (1516)
T KOG1832|consen  747 LLQYKNPPTTADCIRALACRVLLGLARDDTVRQILTKL  784 (1516)
T ss_pred             HHhccCCCCcHHHHHHHHHHHHhccccCcHHHHHHHhC
Confidence            998543     458999999999999999988887664

>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]

Probab=97.12  E-value=0.098  Score=51.55  Aligned_cols=158  Identities=18%  Similarity=0.108  Sum_probs=102.9

Q ss_pred             CCHHHHHhcCCCCCHHHHHHHHHHHH-HHhccChhhHHHHHHcCCHHHHHHH-hcCCChHHHHHHHHHHHHhh-CChHHH
Q 044999           97 GVINSVLRLFPQSDDSFRTVLVKCLR-VFVTFGNENRVIVARNGGLEIVIDL-LNSCNDGTRRYLLEILSALA-LLREVR  173 (461)
Q Consensus        97 ~~l~~L~~ll~~~~~~~~~~~~~~l~-~l~~~~~~~~~~~~~~g~i~~L~~l-l~~~~~~~~~~a~~~L~~l~-~~~~~~  173 (461)
                      ++-+.+-+++.+.||-.|......+. ..+...        .++++..|+.. .++.+.++|+.|..+|.-++ .+++. 
T Consensus       519 ~Ad~lI~el~~dkdpilR~~Gm~t~alAy~GTg--------nnkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp~~-  589 (929)
T KOG2062|consen  519 DADPLIKELLRDKDPILRYGGMYTLALAYVGTG--------NNKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPEQ-  589 (929)
T ss_pred             hhHHHHHHHhcCCchhhhhhhHHHHHHHHhccC--------chhhHHHhhcccccccchHHHHHHHHHheeeEecChhh-
Confidence            33444556677777776666665554 222111        23345556664 56778899999999998887 44444 


Q ss_pred             HHHHhcCCHHHHHHHHc-CCCHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhcccCCHHHHHHHHHHHHHHhcC-
Q 044999          174 RVLICLGGLRYLVEAVS-FGSMVSRERACQAIGLLAVTGRARRLLVELGVIPGLVELFHIGDWTTKLVAGNTLGVVAAH-  251 (461)
Q Consensus       174 ~~~~~~~~l~~l~~~l~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~-  251 (461)
                              ++..+++|. +.|+.+|..++.+|+-.|.....+..      +..|-.+..+...-+|..|+-++..+... 
T Consensus       590 --------~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~eA------i~lLepl~~D~~~fVRQgAlIa~amIm~Q~  655 (929)
T KOG2062|consen  590 --------LPSTVSLLSESYNPHVRYGAAMALGIACAGTGLKEA------INLLEPLTSDPVDFVRQGALIALAMIMIQQ  655 (929)
T ss_pred             --------chHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcHHH------HHHHhhhhcChHHHHHHHHHHHHHHHHHhc
Confidence                    455666665 45999999999999998887766543      45566666677777888888888776654 


Q ss_pred             -ccchhhhhhcCCHHHHHHHhCCCChhHH
Q 044999          252 -VEYITPVAEAGAIPLYAELLQGPDSTGK  279 (461)
Q Consensus       252 -~~~~~~~~~~g~i~~L~~ll~~~~~~~~  279 (461)
                       +.....+  .++...+.+.+.+.+.+..
T Consensus       656 t~~~~pkv--~~frk~l~kvI~dKhEd~~  682 (929)
T KOG2062|consen  656 TEQLCPKV--NGFRKQLEKVINDKHEDGM  682 (929)
T ss_pred             ccccCchH--HHHHHHHHHHhhhhhhHHH
Confidence             3333222  3556677777776655543

>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.11  E-value=0.0082  Score=59.34  Aligned_cols=216  Identities=15%  Similarity=0.083  Sum_probs=145.3

Q ss_pred             CChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHH-HhhcCchhHHHHHhcCChHHHHHhcccCCH-HHHHHHHHHH
Q 044999          168 LLREVRRVLICLGGLRYLVEAVSFGSMVSRERACQAIG-LLAVTGRARRLLVELGVIPGLVELFHIGDW-TTKLVAGNTL  245 (461)
Q Consensus       168 ~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~-~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~-~~~~~a~~~L  245 (461)
                      .....+...+..|+...|+.+...+.+..+.....+|. .+.......     ...++.+...+.+... --...++.++
T Consensus       492 ~~K~~~~~~Ik~~~~~aLlrl~~~q~e~akl~~~~aL~~~i~f~~~~~-----~~v~~~~~s~~~~d~~~~en~E~L~al  566 (748)
T KOG4151|consen  492 KEKYERAKKIKPGGYEALLRLGQQQFEEAKLKWYHALAGKIDFPGERS-----YEVVKPLDSALHNDEKGLENFEALEAL  566 (748)
T ss_pred             hhHHhcCccccccHHHHHHHHHHHhchHHHHHHHHHHhhhcCCCCCch-----hhhhhhhcchhhhhHHHHHHHHHHHHh
Confidence            34555666778899999999998888877777777776 332222211     2245555555553322 2234678899


Q ss_pred             HHHhcC-ccchhhhhhcCCHHHHHHHhCCCChhHHHHHHHHHHHhccCcccHHHHH------HHHH-HHhccCCHHHHHH
Q 044999          246 GVVAAH-VEYITPVAEAGAIPLYAELLQGPDSTGKEISEDVFCILAVSEANANAIA------EHLV-RILREGDNEANAA  317 (461)
Q Consensus       246 ~~l~~~-~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~i~------~~l~-~ll~~~~~~~~~~  317 (461)
                      .||+.. ...|..+.+...++.+-.++...++..+..++..+.||..++..-....      ..++ ..+.........+
T Consensus       567 tnLas~s~s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~~E~~~lA  646 (748)
T KOG4151|consen  567 TNLASISESDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVADEKFELA  646 (748)
T ss_pred             hcccCcchhhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhhhhHHhhh
Confidence            999887 6777778888778888888888899999999999999988877654443      3333 3344445556666


Q ss_pred             HHHHHHHhhCC-CCchh-HHhhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcC-ChhhHHHHHhCCChHHHHHh
Q 044999          318 AADVLWDLAGY-KHSVP-VIRNSGAIPILVNLLRGENDEVREKVSGAIAQLSY-NEADRVALADAGAVPIMIEL  388 (461)
Q Consensus       318 a~~~L~~l~~~-~~~~~-~l~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~-~~~~~~~~~~~~~i~~L~~l  388 (461)
                      ++.++..+... ..++. ...-..+...++.++.+++++++...+....|+.. ..+....+.....++.+..+
T Consensus       647 ~a~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~~~~~~ei~~~~~~~~~~~~l~~~  720 (748)
T KOG4151|consen  647 GAGALAAITSVVENHCSRILELLEWLEILVRAIQDEDDEIQHRGLVIILNLFEALFEIAEKIFETEVMELLSGL  720 (748)
T ss_pred             ccccccchhhcchhhhhhHHHhhcchHHHHHhhcCchhhhhhhhhhhhhhHHHHHHHHHHHhccchHHHHHHHH
Confidence            66776655543 33333 33344678889999999999999999988888665 44445555555544444443

>KOG2032 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.05  E-value=0.29  Score=46.14  Aligned_cols=263  Identities=14%  Similarity=0.024  Sum_probs=137.1

Q ss_pred             HcCCHHHHHHHh----cCCChHHHHHHHHHHHHhhCC-hHHHHHHHhcCCHHHHHHHHcCC-CHHHHHHHHHHHHHhhcC
Q 044999          137 RNGGLEIVIDLL----NSCNDGTRRYLLEILSALALL-REVRRVLICLGGLRYLVEAVSFG-SMVSRERACQAIGLLAVT  210 (461)
Q Consensus       137 ~~g~i~~L~~ll----~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~~~l~~l~~~l~~~-~~~~~~~a~~~L~~l~~~  210 (461)
                      +.|.+..++..+    .+++..++..|++.|.+.+.. ++..... ..-.+..++.-|.++ +.+|+..++.+|..+...
T Consensus       252 ~~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th-~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~  330 (533)
T KOG2032|consen  252 KTGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTH-KTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEK  330 (533)
T ss_pred             ccccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHh-HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHh
Confidence            344444444433    345668999999999999955 4333322 223456666666555 779999999988887665


Q ss_pred             chh---HHHHHhcCChHHHHHhcccCCHHHHHHHHHHHHHHhcC--ccchhhhhhc--CCHHHHHHHhCCCChhHHHHHH
Q 044999          211 GRA---RRLLVELGVIPGLVELFHIGDWTTKLVAGNTLGVVAAH--VEYITPVAEA--GAIPLYAELLQGPDSTGKEISE  283 (461)
Q Consensus       211 ~~~---~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~--~~~~~~~~~~--g~i~~L~~ll~~~~~~~~~~a~  283 (461)
                      ..+   ...+.  .+.-.+..+..+.+++.+..+...++.|+..  ...+..+.+.  +....++--+.+.++.+-. |+
T Consensus       331 ~~~~~l~~~~l--~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~va~-AC  407 (533)
T KOG2032|consen  331 ASNDDLESYLL--NIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPYVAR-AC  407 (533)
T ss_pred             hhhcchhhhch--hHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChHHHH-HH
Confidence            544   22232  2455677788899999999999888888876  3444444431  2233444446666776554 44


Q ss_pred             HHHHHhccCcccHHHHHHHHHHHhccCCHHHHHHHHHHHHHhh-CCCCchhHHhhcCCHHHHHHhhcCCCHHHHHHHHHH
Q 044999          284 DVFCILAVSEANANAIAEHLVRILREGDNEANAAAADVLWDLA-GYKHSVPVIRNSGAIPILVNLLRGENDEVREKVSGA  362 (461)
Q Consensus       284 ~~L~~l~~~~~~~~~i~~~l~~ll~~~~~~~~~~a~~~L~~l~-~~~~~~~~l~~~g~i~~L~~ll~~~~~~v~~~a~~~  362 (461)
                      +.........-.+++....+-+.+...-+..+.---..-..+. .+++.......     ....+++..-+.++..+..-
T Consensus       408 r~~~~~c~p~l~rke~~~~~q~~ld~~~~~~q~Fyn~~c~~L~~i~~d~l~~~~t-----~~~~~f~sswe~vr~aavl~  482 (533)
T KOG2032|consen  408 RSELRTCYPNLVRKELYHLFQESLDTDMARFQAFYNQWCIQLNHIHPDILMLLLT-----EDQHIFSSSWEQVREAAVLK  482 (533)
T ss_pred             HHHHHhcCchhHHHHHHHHHhhhhHHhHHHHHHHHHHHHHHHhhhCHHHHHHHHH-----hchhheecchHHHHHHHHHH
Confidence            4444443333334433322221221111111110000000111 11111111111     11222333334455555443


Q ss_pred             HHHhcC--ChhhHHHHHhCCChHHHHHhccCCCHHHHHHHHHHHHHhc
Q 044999          363 IAQLSY--NEADRVALADAGAVPIMIELLHDESEELRDNAAESLINFS  408 (461)
Q Consensus       363 L~~l~~--~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~  408 (461)
                      -.+...  .+..+...........|-.+.+++-|+++..+..++..+.
T Consensus       483 t~~~vd~l~~~~c~~~d~~qL~~~ls~l~~dp~pev~~~a~~al~~l~  530 (533)
T KOG2032|consen  483 TTRSVDSLVRAACSSADGLQLRSSLSTLWRDPRPEVTDSARKALDLLS  530 (533)
T ss_pred             HHHHHHHhHHHHHHHhhHHHHHHHHHHHccCCCchhHHHHHHHhhhHh
Confidence            333332  2232333322233455566778899999999999987765

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1

Probab=97.04  E-value=0.083  Score=44.03  Aligned_cols=92  Identities=15%  Similarity=0.085  Sum_probs=72.7

Q ss_pred             CHHHHHHHHHHHHHhhcCchh-HHHHHhcCChHHHHHhcccCCHHHHHHHHHHHHHHhcCccchhhhhhcCCHHHHHHHh
Q 044999          193 SMVSRERACQAIGLLAVTGRA-RRLLVELGVIPGLVELFHIGDWTTKLVAGNTLGVVAAHVEYITPVAEAGAIPLYAELL  271 (461)
Q Consensus       193 ~~~~~~~a~~~L~~l~~~~~~-~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~ll  271 (461)
                      ++.+|..++.+++-|+...++ -+     ..++.+...|.++++.+|..|+.+|..|...+-.+.   +...+..++.++
T Consensus         1 ~~~vR~n~i~~l~DL~~r~~~~ve-----~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~---k~~l~~~~l~~l   72 (178)
T PF12717_consen    1 DPSVRNNAIIALGDLCIRYPNLVE-----PYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKV---KGQLFSRILKLL   72 (178)
T ss_pred             CHHHHHHHHHHHHHHHHhCcHHHH-----hHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceee---hhhhhHHHHHHH
Confidence            467899999999998877665 22     257899999999999999999999999986522221   112247788888


Q ss_pred             CCCChhHHHHHHHHHHHhccC
Q 044999          272 QGPDSTGKEISEDVFCILAVS  292 (461)
Q Consensus       272 ~~~~~~~~~~a~~~L~~l~~~  292 (461)
                      .+++++++..|...+..+...
T Consensus        73 ~D~~~~Ir~~A~~~~~e~~~~   93 (178)
T PF12717_consen   73 VDENPEIRSLARSFFSELLKK   93 (178)
T ss_pred             cCCCHHHHHHHHHHHHHHHHh
Confidence            999999999999999998665

>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []

Probab=97.01  E-value=0.021  Score=49.30  Aligned_cols=161  Identities=15%  Similarity=0.092  Sum_probs=113.1

Q ss_pred             HHhccChhhHHHHHHcCCHHHHHHHhcCCC-----hHHHHHHHHHHHHhhC--ChHHHHHHHhcCCHHHHHHHHcCCCHH
Q 044999          123 VFVTFGNENRVIVARNGGLEIVIDLLNSCN-----DGTRRYLLEILSALAL--LREVRRVLICLGGLRYLVEAVSFGSMV  195 (461)
Q Consensus       123 ~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~-----~~~~~~a~~~L~~l~~--~~~~~~~~~~~~~l~~l~~~l~~~~~~  195 (461)
                      .++ .+++.|..|.+.++.-.|..+|+..+     +.+|..++.+++.+..  +.+....+...+++|..++.++.+++-
T Consensus        76 ~vA-shpetr~~Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~Gsel  154 (262)
T PF04078_consen   76 CVA-SHPETRMPFLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSEL  154 (262)
T ss_dssp             HHH-H-TTTHHHHHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HH
T ss_pred             HHH-cChHHHHHHHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHH
Confidence            555 57799999999998888888886543     3789999999999994  566677888899999999999999988


Q ss_pred             HHHHHHHHHHHhhcCchhHHHHHh--------cCChHHHHH-hcccCCHHHHHHHHHHHHHHhcCccchhhhhhcCCHHH
Q 044999          196 SRERACQAIGLLAVTGRARRLLVE--------LGVIPGLVE-LFHIGDWTTKLVAGNTLGVVAAHVEYITPVAEAGAIPL  266 (461)
Q Consensus       196 ~~~~a~~~L~~l~~~~~~~~~~~~--------~~~i~~L~~-ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~  266 (461)
                      .+..|..++..+-.++..-..+.+        ..++..++. +..++++...++..++-..|+.++..+..+...     
T Consensus       155 SKtvAtfIlqKIL~dd~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnprar~aL~~~-----  229 (262)
T PF04078_consen  155 SKTVATFILQKILLDDVGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNPRAREALRQC-----  229 (262)
T ss_dssp             HHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTSTTHHHHHHHH-----
T ss_pred             HHHHHHHHHHHHHcchhHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccCHHHHHHHHHh-----
Confidence            899999999888777655333322        223444444 334778899999999999999998888777532     


Q ss_pred             HHHHhCC--------CChhHHHHHHHHHHHh
Q 044999          267 YAELLQG--------PDSTGKEISEDVFCIL  289 (461)
Q Consensus       267 L~~ll~~--------~~~~~~~~a~~~L~~l  289 (461)
                      +-..+++        +|+.++.+-...+.|+
T Consensus       230 LP~~Lrd~~f~~~l~~D~~~k~~l~qLl~nl  260 (262)
T PF04078_consen  230 LPDQLRDGTFSNILKDDPSTKRWLQQLLSNL  260 (262)
T ss_dssp             S-GGGTSSTTTTGGCS-HHHHHHHHHHHHHT
T ss_pred             CcHHHhcHHHHHHHhcCHHHHHHHHHHHHHh
Confidence            1222222        3666777666666554

Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.

>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins

Probab=96.96  E-value=0.39  Score=46.18  Aligned_cols=342  Identities=14%  Similarity=0.147  Sum_probs=187.6

Q ss_pred             HHHHHHhhccCCCCCCCcH-HHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHhcCCC-CCHHHHHHHHHHHHHHhcc
Q 044999           50 IPILARLLGENNFSGNLTR-SIQQAAAYCLKQIASQADGALATEIGQSGVINSVLRLFPQ-SDDSFRTVLVKCLRVFVTF  127 (461)
Q Consensus        50 i~~l~~~l~~~~~~~~~~~-~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~ll~~-~~~~~~~~~~~~l~~l~~~  127 (461)
                      +|.++..|..    ++++. ...+....+|..+|.  ....-+.+.. ..+..+-...+. .+.+.......++..+...
T Consensus         1 ~p~ll~~Lpd----~~~~~~~~~~~~L~~l~~ls~--~~~i~~~~~~-~ll~kl~~~~~~~~~~~~~~~il~tl~~~~~~   73 (415)
T PF12460_consen    1 LPALLALLPD----SDSSTDSNYERILEALAALST--SPQILETLSI-RLLNKLSIVCQSESSSDYCHAILSTLQSLLEK   73 (415)
T ss_pred             CchHHhhCCC----CCCcchhHHHHHHHHHHHHHC--ChhHHHHHHH-HHHHHHHHHhcCCCChHHHHHHHHHHHHHHHh
Confidence            3567777764    33222 344558899999998  5544333322 344444444442 2455566666677655543


Q ss_pred             ChhhH-----HHHHHcCCHHHHHHHhcCC-------ChHHHHHHHHHHHHhh--CChHHHHHHHhcCCHHHHHHHHc---
Q 044999          128 GNENR-----VIVARNGGLEIVIDLLNSC-------NDGTRRYLLEILSALA--LLREVRRVLICLGGLRYLVEAVS---  190 (461)
Q Consensus       128 ~~~~~-----~~~~~~g~i~~L~~ll~~~-------~~~~~~~a~~~L~~l~--~~~~~~~~~~~~~~l~~l~~~l~---  190 (461)
                      .....     ....+...++.++++.-..       ++.+...+..++..+.  .+.+.++.+.+     .+..++-   
T Consensus        74 ~~~~~~~~~~~~y~~~~lv~~l~~~~~~~~~~~~~~~~~~L~~~~~l~~~iv~~l~~~~q~~~~~-----~~~~lf~~~~  148 (415)
T PF12460_consen   74 KQEDKQFEDNSWYFHRILVPRLFELALQASDQSSDLDDRVLELLSRLINLIVRSLSPEKQQEILD-----ELYSLFLSPK  148 (415)
T ss_pred             cccccccchHHHHHHhHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHhCCHHHHHHHHH-----HHHHHHcccc
Confidence            32222     3333444777777755221       2344455555555555  34444545433     2222222   


Q ss_pred             -------CCC------HHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhcc-cCCHHHHHHHHHHHHHHhcC-ccch
Q 044999          191 -------FGS------MVSRERACQAIGLLAVTGRARRLLVELGVIPGLVELFH-IGDWTTKLVAGNTLGVVAAH-VEYI  255 (461)
Q Consensus       191 -------~~~------~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~-~~~~~~~~~a~~~L~~l~~~-~~~~  255 (461)
                             ..+      .....-...++..+-......   -....+..++.+.. ..++..+..++.+++.+... ++..
T Consensus       149 ~~~~~~~~~~~~~~~~~~~~~l~~~il~~l~~~~~~~---~~~~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~  225 (415)
T PF12460_consen  149 SFSPFQPSSSTISEQQSRLVILFSAILCSLRKDVSLP---DLEELLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDD  225 (415)
T ss_pred             ccCCCCccccccccccccHHHHHHHHHHcCCcccCcc---CHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChh
Confidence                   111      111222223333332222111   11125667777655 44577788888888887764 1111


Q ss_pred             hhhhhcCCHHHHHHHh-CCCChhHHHHHHH----HHHHh-ccCcccHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhCC-
Q 044999          256 TPVAEAGAIPLYAELL-QGPDSTGKEISED----VFCIL-AVSEANANAIAEHLVRILREGDNEANAAAADVLWDLAGY-  328 (461)
Q Consensus       256 ~~~~~~g~i~~L~~ll-~~~~~~~~~~a~~----~L~~l-~~~~~~~~~i~~~l~~ll~~~~~~~~~~a~~~L~~l~~~-  328 (461)
                       .+  ..++..+..-+ ...++..+..+..    +..-+ ..+.+....+.+.+++++.+  +++...++..+.-+... 
T Consensus       226 -~l--~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~~~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~  300 (415)
T PF12460_consen  226 -DL--DEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGHPLATELLDKLLELLSS--PELGQQAAKAFGILLSDS  300 (415)
T ss_pred             -hH--HHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHhCC--hhhHHHHHHHHhhHhcCc
Confidence             11  12233333333 2223333333333    33333 34444455555888888877  77778888888888765 


Q ss_pred             CC--------chhHHhhcC----CHHHHHHhhcCCCHHHHHHHHHHHHHhcCChhhHHHHHh-CCChHHHHHhccCCCHH
Q 044999          329 KH--------SVPVIRNSG----AIPILVNLLRGENDEVREKVSGAIAQLSYNEADRVALAD-AGAVPIMIELLHDESEE  395 (461)
Q Consensus       329 ~~--------~~~~l~~~g----~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~-~~~i~~L~~ll~~~~~~  395 (461)
                      ++        +.+.+.+..    .+|.|++-.+..+...+...+.+|.++..+-...-..-+ ...+|.|++-+..++++
T Consensus       301 ~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~  380 (415)
T PF12460_consen  301 DDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDAD  380 (415)
T ss_pred             HHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHH
Confidence            22        222222222    467777777777777888899999999883221111111 23688899999889999


Q ss_pred             HHHHHHHHHHHhcCCC
Q 044999          396 LRDNAAESLINFSEDP  411 (461)
Q Consensus       396 ~~~~a~~~L~~l~~~~  411 (461)
                      ++..+..+|..+..+.
T Consensus       381 v~~s~L~tL~~~l~~~  396 (415)
T PF12460_consen  381 VLLSSLETLKMILEEA  396 (415)
T ss_pred             HHHHHHHHHHHHHHcC
Confidence            9999999999998776

MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region

Probab=96.91  E-value=0.0065  Score=44.50  Aligned_cols=91  Identities=20%  Similarity=0.053  Sum_probs=62.9

Q ss_pred             HHHHHHHHHHhhC-ChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhcccCC
Q 044999          156 RRYLLEILSALAL-LREVRRVLICLGGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRARRLLVELGVIPGLVELFHIGD  234 (461)
Q Consensus       156 ~~~a~~~L~~l~~-~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~  234 (461)
                      |..++..|...+. -... ..-.-..+++.++..+.++++.+|..|+.+|.+++......-...-..++..|.+++.+.+
T Consensus         3 R~ggli~Laa~ai~l~~~-~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d   81 (97)
T PF12755_consen    3 RKGGLIGLAAVAIALGKD-ISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPD   81 (97)
T ss_pred             hhHHHHHHHHHHHHchHh-HHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence            5566777777762 2222 1112234789999999999999999999999999876654222222457888888888999


Q ss_pred             HHHHHHHHHHHHHH
Q 044999          235 WTTKLVAGNTLGVV  248 (461)
Q Consensus       235 ~~~~~~a~~~L~~l  248 (461)
                      +.++..|. .|-++
T Consensus        82 ~~Vr~~a~-~Ld~l   94 (97)
T PF12755_consen   82 ENVRSAAE-LLDRL   94 (97)
T ss_pred             hhHHHHHH-HHHHH
Confidence            98887663 44443

>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms

Probab=96.90  E-value=0.49  Score=46.28  Aligned_cols=289  Identities=15%  Similarity=0.083  Sum_probs=148.4

Q ss_pred             cHHHhHHHHHHHhhcCCHHHHHHHHHHHHhhcCCCchhHHHh-hHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHhcC
Q 044999            7 NWEEAFNRFEQAVVSGSEALQVKALTKLARVSKFAPQDILAA-TIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQA   85 (461)
Q Consensus         7 ~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~la~~~~~~~l~~-~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~   85 (461)
                      ..++.+..++...+ ++..++..|+..+......-+  .+.+ +|..++++...      +|..+++.|...|-.+|.+ 
T Consensus        20 ~~~~~y~~il~~~k-g~~k~K~Laaq~I~kffk~FP--~l~~~Ai~a~~DLcED------ed~~iR~~aik~lp~~ck~-   89 (556)
T PF05918_consen   20 QHEEDYKEILDGVK-GSPKEKRLAAQFIPKFFKHFP--DLQEEAINAQLDLCED------EDVQIRKQAIKGLPQLCKD-   89 (556)
T ss_dssp             GGHHHHHHHHHGGG-S-HHHHHHHHHHHHHHHCC-G--GGHHHHHHHHHHHHT-------SSHHHHHHHHHHGGGG--T-
T ss_pred             cCHHHHHHHHHHcc-CCHHHHHHHHHHHHHHHhhCh--hhHHHHHHHHHHHHhc------ccHHHHHHHHHhHHHHHHh-
Confidence            45667777777655 578899999999888872211  1334 89999999974      6788999999999999996 


Q ss_pred             CchhHHHHHhcCCHHHHHhcCCCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhc---CCChHHHHHHHHH
Q 044999           86 DGALATEIGQSGVINSVLRLFPQSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLN---SCNDGTRRYLLEI  162 (461)
Q Consensus        86 ~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll~---~~~~~~~~~a~~~  162 (461)
                      +++....+     ...|+++|.++++.....+-.++..+...++..        .+..++..+.   +.++.+|+.++..
T Consensus        90 ~~~~v~kv-----aDvL~QlL~tdd~~E~~~v~~sL~~ll~~d~k~--------tL~~lf~~i~~~~~~de~~Re~~lkF  156 (556)
T PF05918_consen   90 NPEHVSKV-----ADVLVQLLQTDDPVELDAVKNSLMSLLKQDPKG--------TLTGLFSQIESSKSGDEQVRERALKF  156 (556)
T ss_dssp             --T-HHHH-----HHHHHHHTT---HHHHHHHHHHHHHHHHH-HHH--------HHHHHHHHHH---HS-HHHHHHHHHH
T ss_pred             HHHHHhHH-----HHHHHHHHhcccHHHHHHHHHHHHHHHhcCcHH--------HHHHHHHHHHhcccCchHHHHHHHHH
Confidence            44443333     578999999998877777777777666555332        2334444443   5677899999988


Q ss_pred             HHHhh--CChHH-H-HHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcC----ch-hHHHHHhcCChHHHHHhc---
Q 044999          163 LSALA--LLREV-R-RVLICLGGLRYLVEAVSFGSMVSRERACQAIGLLAVT----GR-ARRLLVELGVIPGLVELF---  230 (461)
Q Consensus       163 L~~l~--~~~~~-~-~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~----~~-~~~~~~~~~~i~~L~~ll---  230 (461)
                      |..-.  ...+. . ..=.+.-++..+-+.|.+-..+--...+.+|..+-..    .. .+..++     +.+.+..   
T Consensus       157 l~~kl~~l~~~~~~p~~E~e~~i~~~ikkvL~DVTaeEF~l~m~lL~~lk~~~~~~t~~g~qeLv-----~ii~eQa~Ld  231 (556)
T PF05918_consen  157 LREKLKPLKPELLTPQKEMEEFIVDEIKKVLQDVTAEEFELFMSLLKSLKIYGGKQTIEGRQELV-----DIIEEQADLD  231 (556)
T ss_dssp             HHHHGGGS-TTTS---HHHHHHHHHHHHHHCTT--HHHHHHHHHHHHTSGG---GSSHHHHHHHH-----HHHHHHHTTT
T ss_pred             HHHHHhhCcHHHhhchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhCccccccCChHHHHHHH-----HHHHHHhccC
Confidence            85432  11111 1 0111122344455666654555555666667666552    11 133332     2233222   


Q ss_pred             ---ccCCHHHHHHHHHHHHH-H---hcCccchhhhh---hcCCHHHHHHHhCCCChhHHHHHHHHHHHhccCccc--HHH
Q 044999          231 ---HIGDWTTKLVAGNTLGV-V---AAHVEYITPVA---EAGAIPLYAELLQGPDSTGKEISEDVFCILAVSEAN--ANA  298 (461)
Q Consensus       231 ---~~~~~~~~~~a~~~L~~-l---~~~~~~~~~~~---~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~--~~~  298 (461)
                         ...+++.......++.. +   +..... ..++   ...++|.+-.+    +++.+...+.+++.++.+...  ...
T Consensus       232 ~~f~~sD~e~Idrli~C~~~Alp~fs~~v~S-skfv~y~~~kvlP~l~~l----~e~~kl~lLk~lAE~s~~~~~~d~~~  306 (556)
T PF05918_consen  232 QPFDPSDPESIDRLISCLRQALPFFSRGVSS-SKFVNYMCEKVLPKLSDL----PEDRKLDLLKLLAELSPFCGAQDARQ  306 (556)
T ss_dssp             S---SSSHHHHHHHHHHHHHHGGG-BTTB---HHHHHHHHHHTCCCTT---------HHHHHHHHHHHHHTT----THHH
T ss_pred             CCCCCcCHHHHHHHHHHHHHhhHHhcCCCCh-HHHHHHHHHHhcCChhhC----ChHHHHHHHHHHHHHcCCCCcccHHH
Confidence               23345555444444433 2   121111 1111   11233333222    456677777788777543322  334


Q ss_pred             HHHHHHHHhcc------CCH----HHHHHHHHHHHHhhCC
Q 044999          299 IAEHLVRILRE------GDN----EANAAAADVLWDLAGY  328 (461)
Q Consensus       299 i~~~l~~ll~~------~~~----~~~~~a~~~L~~l~~~  328 (461)
                      +.+.+.++|..      ..+    ...+..+.++..|+..
T Consensus       307 ~L~~i~~~L~~ymP~~~~~~~l~fs~vEcLL~afh~La~k  346 (556)
T PF05918_consen  307 LLPSIFQLLKKYMPSKKTEPKLQFSYVECLLYAFHQLARK  346 (556)
T ss_dssp             HHHHHHHHHHTTS----------HHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHhCCCCCCCCcccchHhhHHHHHHHHHhhh
Confidence            44555555532      123    3445666666677743

Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.

>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []

Probab=96.83  E-value=0.13  Score=47.04  Aligned_cols=185  Identities=17%  Similarity=0.148  Sum_probs=110.0

Q ss_pred             hHHHHHhcccCCHHHHHHHHHHHHHHhcCccchhhhhhc--CCHHHHHHHhCCCChhHHHHHHHHHHHhccC---cccHH
Q 044999          223 IPGLVELFHIGDWTTKLVAGNTLGVVAAHVEYITPVAEA--GAIPLYAELLQGPDSTGKEISEDVFCILAVS---EANAN  297 (461)
Q Consensus       223 i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~--g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~---~~~~~  297 (461)
                      +...+..+.......|+.++..+.++.........+.+.  .+++.+...++.+..+-+..|+.++.-++..   .....
T Consensus        45 L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~  124 (309)
T PF05004_consen   45 LKEAIDLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSE  124 (309)
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHH
Confidence            344555556667889999988888877653333333221  4577788888877766667777777766433   23333


Q ss_pred             HHH----HHHHHHhccC--CHHHHHHHHHHHHHhhCC-CCchhHHh-hcCCHHHHHH--hhc-C---------CCHHHHH
Q 044999          298 AIA----EHLVRILREG--DNEANAAAADVLWDLAGY-KHSVPVIR-NSGAIPILVN--LLR-G---------ENDEVRE  357 (461)
Q Consensus       298 ~i~----~~l~~ll~~~--~~~~~~~a~~~L~~l~~~-~~~~~~l~-~~g~i~~L~~--ll~-~---------~~~~v~~  357 (461)
                      .+.    |.|.+.+.++  .+..|..++.+|+-++.. ......+. -...++.+..  ..+ +         +++.+..
T Consensus       125 ei~~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~  204 (309)
T PF05004_consen  125 EIFEELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVA  204 (309)
T ss_pred             HHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHH
Confidence            444    8888888765  356777777777776642 11111111 0112232211  111 1         1245777


Q ss_pred             HHHHHHHHhcC-Chh-hHHHHHhCCChHHHHHhccCCCHHHHHHHHHHHHHhc
Q 044999          358 KVSGAIAQLSY-NEA-DRVALADAGAVPIMIELLHDESEELRDNAAESLINFS  408 (461)
Q Consensus       358 ~a~~~L~~l~~-~~~-~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~  408 (461)
                      .|+.+-+-|.. -+. ......+ ..+|.|..+|.+.+.++|..|..+|.-|.
T Consensus       205 aAL~aW~lLlt~~~~~~~~~~~~-~~~~~l~~lL~s~d~~VRiAAGEaiAll~  256 (309)
T PF05004_consen  205 AALSAWALLLTTLPDSKLEDLLE-EALPALSELLDSDDVDVRIAAGEAIALLY  256 (309)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHH-HHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence            77655555554 222 1223322 35899999999999999999999888764

The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].

>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D

Probab=96.77  E-value=0.15  Score=47.80  Aligned_cols=231  Identities=17%  Similarity=0.141  Sum_probs=132.3

Q ss_pred             HHHHHHHhcCC-ChHHHHHHHHHHHHhhCChHHHHHHHhcCCHHHHHHHHcCC-CHHHHH-HHHHHHHHhhcCchhHHHH
Q 044999          141 LEIVIDLLNSC-NDGTRRYLLEILSALALLREVRRVLICLGGLRYLVEAVSFG-SMVSRE-RACQAIGLLAVTGRARRLL  217 (461)
Q Consensus       141 i~~L~~ll~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~~l~~~-~~~~~~-~a~~~L~~l~~~~~~~~~~  217 (461)
                      +..+++-++.. ...+|..++--|+.-+.+++++..+...|..+.+++.+... +..... .++.++.-++........+
T Consensus        23 v~ylld~l~~~~~~s~Rr~sll~La~K~~~~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~~~~l~  102 (361)
T PF07814_consen   23 VEYLLDGLESSSSSSVRRSSLLELASKCADPQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGLNMHLL  102 (361)
T ss_pred             HHHHHhhcccCCCccHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCcchhhh
Confidence            45566655533 34889999999999999999999999999999999999544 332333 3333444444444333333


Q ss_pred             HhcCChHHHHHhcc--c------------------------------------------CCHHHHHHHHHHHHHHh----
Q 044999          218 VELGVIPGLVELFH--I------------------------------------------GDWTTKLVAGNTLGVVA----  249 (461)
Q Consensus       218 ~~~~~i~~L~~ll~--~------------------------------------------~~~~~~~~a~~~L~~l~----  249 (461)
                      .+.+....++.++.  .                                          .....+..|..++..++    
T Consensus       103 ~~~~~~~ll~~Ll~~~~~~~~~~~~~~~~~~~lsk~~~~~~~~~~~~~~~~~~~~~~~~~~lsp~~lall~le~l~~~~~  182 (361)
T PF07814_consen  103 LDRDSLRLLLKLLKVDKSLDVPSDSDSSRKKNLSKVQQKSRSLCKELLSSGSSWKSPKPPELSPQTLALLALESLVRSLR  182 (361)
T ss_pred             hchhHHHHHHHHhccccccccccchhhhhhhhhhHHHHHHHHHHHHHHhccccccccCCcccccccHHHHHHHHHHHHHh
Confidence            33334444344443  0                                          00112224444444442    


Q ss_pred             ----------cC-ccchhhhhhcCCHHHHHHHhCC----C-------C-----hhHHHHHHHHHHHhcc-CcccHHHHH-
Q 044999          250 ----------AH-VEYITPVAEAGAIPLYAELLQG----P-------D-----STGKEISEDVFCILAV-SEANANAIA-  300 (461)
Q Consensus       250 ----------~~-~~~~~~~~~~g~i~~L~~ll~~----~-------~-----~~~~~~a~~~L~~l~~-~~~~~~~i~-  300 (461)
                                .. +..++.+.+.|++..++..+.+    .       +     ......+..+|.+.+. +.+++..+. 
T Consensus       183 ~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l~~cl~ILEs~T~~~~~nq~~l~~  262 (361)
T PF07814_consen  183 EAGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDLERCLSILESVTFLSEENQSYLLS  262 (361)
T ss_pred             hcccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHHHHHHHHHHHHHhcCccchHHHHH
Confidence                      01 3346666777889988888752    1       1     1134456777777753 444555444 


Q ss_pred             ----------HHHHHHhccCCHHHHHHHHHHHHHhhC-CCCchhHHhhcCCHHHHHHhhc--------------CCCHHH
Q 044999          301 ----------EHLVRILREGDNEANAAAADVLWDLAG-YKHSVPVIRNSGAIPILVNLLR--------------GENDEV  355 (461)
Q Consensus       301 ----------~~l~~ll~~~~~~~~~~a~~~L~~l~~-~~~~~~~l~~~g~i~~L~~ll~--------------~~~~~v  355 (461)
                                ..+........++....+++.+.|++- ++.....+...+....+..+..              ....+.
T Consensus       263 ~~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~n~~~c~~~~s~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~D~  342 (361)
T PF07814_consen  263 HRSSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTNNNPSACEEFASPKLGQQLGLIVTSFFCVLSLPNYVPEESSFDI  342 (361)
T ss_pred             hcccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCCCccchHhhhhhHhccchHHHHHhhcccccccccccccccchH
Confidence                      222222222334556788999999994 5666666665544333222211              112346


Q ss_pred             HHHHHHHHHHhcC-Chh
Q 044999          356 REKVSGAIAQLSY-NEA  371 (461)
Q Consensus       356 ~~~a~~~L~~l~~-~~~  371 (461)
                      ..-++.+|-||+. ++.
T Consensus       343 ~IL~Lg~LINL~E~s~~  359 (361)
T PF07814_consen  343 LILALGLLINLVEHSEA  359 (361)
T ss_pred             HHHHHHhHHHheeeCcc
Confidence            6677888888887 443

melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.

>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []

Probab=96.72  E-value=0.15  Score=46.64  Aligned_cols=185  Identities=20%  Similarity=0.225  Sum_probs=114.7

Q ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHhhcCchhHHHHHh--cCChHHHHHhcccCCHHHHHHHHHHHHHHhcC---ccchh
Q 044999          182 LRYLVEAVSFGSMVSRERACQAIGLLAVTGRARRLLVE--LGVIPGLVELFHIGDWTTKLVAGNTLGVVAAH---VEYIT  256 (461)
Q Consensus       182 l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~--~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~---~~~~~  256 (461)
                      +...+..+.+.+...|..++..+.++.........+.+  .-.+..+...++.+..+-+..|+.++.-++..   .....
T Consensus        45 L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~  124 (309)
T PF05004_consen   45 LKEAIDLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSE  124 (309)
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHH
Confidence            44556666677788999999999888755544333322  23577788888877766677787878777765   13333


Q ss_pred             hhhhcCCHHHHHHHhCCCC--hhHHHHHHHHHHHhcc---Cc-ccHHHH---HHHHH--HHhccC----------CHHHH
Q 044999          257 PVAEAGAIPLYAELLQGPD--STGKEISEDVFCILAV---SE-ANANAI---AEHLV--RILREG----------DNEAN  315 (461)
Q Consensus       257 ~~~~~g~i~~L~~ll~~~~--~~~~~~a~~~L~~l~~---~~-~~~~~i---~~~l~--~ll~~~----------~~~~~  315 (461)
                      .+.+ ...|.|...+.+..  +.+|..++.+|+-++.   .+ +.....   .+.+.  ...+++          ++.+.
T Consensus       125 ei~~-~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~  203 (309)
T PF05004_consen  125 EIFE-ELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALV  203 (309)
T ss_pred             HHHH-HHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHH
Confidence            4433 34788888887663  4566666666665532   22 222211   13222  222221          24677


Q ss_pred             HHHHHHHHHhhCC-CCc-hhHHhhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcC
Q 044999          316 AAAADVLWDLAGY-KHS-VPVIRNSGAIPILVNLLRGENDEVREKVSGAIAQLSY  368 (461)
Q Consensus       316 ~~a~~~L~~l~~~-~~~-~~~l~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~  368 (461)
                      ..|+.+-+-|... +.. .... -...++.|..+|.+.+..||..|-.+|+-|..
T Consensus       204 ~aAL~aW~lLlt~~~~~~~~~~-~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E  257 (309)
T PF05004_consen  204 AAALSAWALLLTTLPDSKLEDL-LEEALPALSELLDSDDVDVRIAAGEAIALLYE  257 (309)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHH-HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            7777766666643 331 2222 23468999999999999999999988887754

The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].

>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4

Probab=96.71  E-value=0.38  Score=49.43  Aligned_cols=240  Identities=14%  Similarity=0.135  Sum_probs=149.3

Q ss_pred             HHhcCCHHHHHHHHcCC-----CHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhcc----cCC----HHHHHHHH
Q 044999          176 LICLGGLRYLVEAVSFG-----SMVSRERACQAIGLLAVTGRARRLLVELGVIPGLVELFH----IGD----WTTKLVAG  242 (461)
Q Consensus       176 ~~~~~~l~~l~~~l~~~-----~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~----~~~----~~~~~~a~  242 (461)
                      +.+.||+..++..+.+-     ..+.....+..|..++....+++.+.+.|+++.|++.+.    .+.    ..+.+..+
T Consensus       113 ~~~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL  192 (802)
T PF13764_consen  113 LAECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKVKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQLL  192 (802)
T ss_pred             hhcCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhhHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHHH
Confidence            45678999999998753     346677788888888999888999999999999998875    333    56666666


Q ss_pred             HHHHHHhcCcc---chh--hhhhc--------CCHHHHHHHhCCC----ChhHHHHHHHHHHHhccCcccHHHHH-HHHH
Q 044999          243 NTLGVVAAHVE---YIT--PVAEA--------GAIPLYAELLQGP----DSTGKEISEDVFCILAVSEANANAIA-EHLV  304 (461)
Q Consensus       243 ~~L~~l~~~~~---~~~--~~~~~--------g~i~~L~~ll~~~----~~~~~~~a~~~L~~l~~~~~~~~~i~-~~l~  304 (461)
                      .++..+.....   ...  .....        .-+..+++.+.+.    ++.+....+++|-+|+...+...... +.+-
T Consensus       193 ~IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~~F~  272 (802)
T PF13764_consen  193 EIIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVEHFK  272 (802)
T ss_pred             HHHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHHHHH
Confidence            66655544311   110  00111        1256666666654    57888889999999988776654443 4444


Q ss_pred             HHhccC------CHHHHHHHHHHHHHhhCC-------CCchhHHhhcCCHHHHHHhhcCCCH--------HHH-------
Q 044999          305 RILREG------DNEANAAAADVLWDLAGY-------KHSVPVIRNSGAIPILVNLLRGEND--------EVR-------  356 (461)
Q Consensus       305 ~ll~~~------~~~~~~~a~~~L~~l~~~-------~~~~~~l~~~g~i~~L~~ll~~~~~--------~v~-------  356 (461)
                      ..++-.      .++- ...+.+++.++..       ...++.+++.|++...++++...-|        +-+       
T Consensus       273 p~l~f~~~D~~~~~~~-~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P~~~~~~s~eWk~~l~~ps  351 (802)
T PF13764_consen  273 PYLDFDKFDEEHSPDE-QFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHFPSLKNTDSPEWKEFLSRPS  351 (802)
T ss_pred             HhcChhhcccccCchH-HHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCcccccCCCHHHHHHhcCCc
Confidence            444211      1111 2335666666632       2347888899999999998864332        222       


Q ss_pred             -HHHHHHHHHhcC-ChhhHHHHHhCCChHHHHHhccC-CCHHHHHHHHHHHHHhcCCCcchHHH
Q 044999          357 -EKVSGAIAQLSY-NEADRVALADAGAVPIMIELLHD-ESEELRDNAAESLINFSEDPLQHERI  417 (461)
Q Consensus       357 -~~a~~~L~~l~~-~~~~~~~~~~~~~i~~L~~ll~~-~~~~~~~~a~~~L~~l~~~~~~~~~l  417 (461)
                       ..++..|..|+. ++..+ .....++++.+..+=+. ....+=..|-.+|-.|..+++..+.+
T Consensus       352 Lp~iL~lL~GLa~gh~~tQ-~~~~~~~l~~lH~LEqvss~~~IGslAEnlLeal~~~~~v~~~I  414 (802)
T PF13764_consen  352 LPYILRLLRGLARGHEPTQ-LLIAEQLLPLLHRLEQVSSEEHIGSLAENLLEALAENEDVAKKI  414 (802)
T ss_pred             HHHHHHHHHHHHhcCHHHH-HHHHhhHHHHHHHhhcCCCccchHHHHHHHHHHHhcChhHHHHH
Confidence             346778888888 44444 33556667666555432 23444445555566666655533333

>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms

Probab=96.71  E-value=0.25  Score=48.28  Aligned_cols=258  Identities=16%  Similarity=0.135  Sum_probs=123.9

Q ss_pred             cHHHhHHHHHHHhhcCCHHHHHHHHHHHHhhcCCCchhHHHhhHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHhcCC
Q 044999            7 NWEEAFNRFEQAVVSGSEALQVKALTKLARVSKFAPQDILAATIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQAD   86 (461)
Q Consensus         7 ~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~la~~~~~~~l~~~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~   86 (461)
                      --++++..++.|++++|..+|.+|++.|..+|.+ +.+.+.++...|+++|++      +|+......-.+|..+....+
T Consensus        56 l~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~-~~~~v~kvaDvL~QlL~t------dd~~E~~~v~~sL~~ll~~d~  128 (556)
T PF05918_consen   56 LQEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKD-NPEHVSKVADVLVQLLQT------DDPVELDAVKNSLMSLLKQDP  128 (556)
T ss_dssp             GHHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T---T-HHHHHHHHHHHTT---------HHHHHHHHHHHHHHHHH-H
T ss_pred             hHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHh-HHHHHhHHHHHHHHHHhc------ccHHHHHHHHHHHHHHHhcCc
Confidence            3688999999999999999999999999999911 233445588889999986      555555556667777766311


Q ss_pred             chhHHHHHhcCCHHHHHhcC---CCCCHHHHHHHHHHHH-HHhccCh-hhH-HHHHHcCCHHHHHHHhcCCChHHHHHHH
Q 044999           87 GALATEIGQSGVINSVLRLF---PQSDDSFRTVLVKCLR-VFVTFGN-ENR-VIVARNGGLEIVIDLLNSCNDGTRRYLL  160 (461)
Q Consensus        87 ~~~~~~~~~~~~l~~L~~ll---~~~~~~~~~~~~~~l~-~l~~~~~-~~~-~~~~~~g~i~~L~~ll~~~~~~~~~~a~  160 (461)
                      ..         .+..+...+   .+++..++..+...+. .+-.-.. ... ..-.+.-++..+-++|.+-...--...+
T Consensus       129 k~---------tL~~lf~~i~~~~~~de~~Re~~lkFl~~kl~~l~~~~~~p~~E~e~~i~~~ikkvL~DVTaeEF~l~m  199 (556)
T PF05918_consen  129 KG---------TLTGLFSQIESSKSGDEQVRERALKFLREKLKPLKPELLTPQKEMEEFIVDEIKKVLQDVTAEEFELFM  199 (556)
T ss_dssp             HH---------HHHHHHHHHH---HS-HHHHHHHHHHHHHHGGGS-TTTS---HHHHHHHHHHHHHHCTT--HHHHHHHH
T ss_pred             HH---------HHHHHHHHHHhcccCchHHHHHHHHHHHHHHhhCcHHHhhchHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence            21         223333333   2567777888887776 3322111 111 0111122344455566543332223333


Q ss_pred             HHHHHhhC-----ChHHHHHHHhcCCHHHHHHHH------cCCCHHHHHHHHHHHHH----hhcCchhHHH--HHhcCCh
Q 044999          161 EILSALAL-----LREVRRVLICLGGLRYLVEAV------SFGSMVSRERACQAIGL----LAVTGRARRL--LVELGVI  223 (461)
Q Consensus       161 ~~L~~l~~-----~~~~~~~~~~~~~l~~l~~~l------~~~~~~~~~~a~~~L~~----l~~~~~~~~~--~~~~~~i  223 (461)
                      .+|..+..     ....++.+++     .+.+..      ...+++.....+.++..    ++......+.  ++...++
T Consensus       200 ~lL~~lk~~~~~~t~~g~qeLv~-----ii~eQa~Ld~~f~~sD~e~Idrli~C~~~Alp~fs~~v~Sskfv~y~~~kvl  274 (556)
T PF05918_consen  200 SLLKSLKIYGGKQTIEGRQELVD-----IIEEQADLDQPFDPSDPESIDRLISCLRQALPFFSRGVSSSKFVNYMCEKVL  274 (556)
T ss_dssp             HHHHTSGG---GSSHHHHHHHHH-----HHHHHHTTTS---SSSHHHHHHHHHHHHHHGGG-BTTB--HHHHHHHHHHTC
T ss_pred             HHHHhCccccccCChHHHHHHHH-----HHHHHhccCCCCCCcCHHHHHHHHHHHHHhhHHhcCCCChHHHHHHHHHHhc
Confidence            44444443     2333333332     222222      22344544444444433    2222222111  1123355


Q ss_pred             HHHHHhcccCCHHHHHHHHHHHHHHhcCc--cchhhhhhcCCHHHHHHHhCC------CCh----hHHHHHHHHHHHhcc
Q 044999          224 PGLVELFHIGDWTTKLVAGNTLGVVAAHV--EYITPVAEAGAIPLYAELLQG------PDS----TGKEISEDVFCILAV  291 (461)
Q Consensus       224 ~~L~~ll~~~~~~~~~~a~~~L~~l~~~~--~~~~~~~~~g~i~~L~~ll~~------~~~----~~~~~a~~~L~~l~~  291 (461)
                      |.+-.+    +++.+...+.++..++.+.  .....+     ++.+..+|..      ..+    ...++.+.++.+|+.
T Consensus       275 P~l~~l----~e~~kl~lLk~lAE~s~~~~~~d~~~~-----L~~i~~~L~~ymP~~~~~~~l~fs~vEcLL~afh~La~  345 (556)
T PF05918_consen  275 PKLSDL----PEDRKLDLLKLLAELSPFCGAQDARQL-----LPSIFQLLKKYMPSKKTEPKLQFSYVECLLYAFHQLAR  345 (556)
T ss_dssp             CCTT---------HHHHHHHHHHHHHTT----THHHH-----HHHHHHHHHTTS----------HHHHHHHHHHHHHHHT
T ss_pred             CChhhC----ChHHHHHHHHHHHHHcCCCCcccHHHH-----HHHHHHHHHHhCCCCCCCCcccchHhhHHHHHHHHHhh
Confidence            544444    4566777777888887762  112222     4555555531      122    345666677777765


Q ss_pred             Ccc
Q 044999          292 SEA  294 (461)
Q Consensus       292 ~~~  294 (461)
                      ...
T Consensus       346 k~p  348 (556)
T PF05918_consen  346 KSP  348 (556)
T ss_dssp             T-T
T ss_pred             hCc
Confidence            443

Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region

Probab=96.70  E-value=0.0096  Score=43.61  Aligned_cols=82  Identities=13%  Similarity=0.171  Sum_probs=58.4

Q ss_pred             HHHHHHHHHHhhcCchh--HHHHHhcCChHHHHHhcccCCHHHHHHHHHHHHHHhcCccchhhhhh--cCCHHHHHHHhC
Q 044999          197 RERACQAIGLLAVTGRA--RRLLVELGVIPGLVELFHIGDWTTKLVAGNTLGVVAAHVEYITPVAE--AGAIPLYAELLQ  272 (461)
Q Consensus       197 ~~~a~~~L~~l~~~~~~--~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~--~g~i~~L~~ll~  272 (461)
                      |..++.+|...+..-+.  ...+  ...+++++..+.++++.+|..|+.+|.|++...  +..+..  ..+++.|..++.
T Consensus         3 R~ggli~Laa~ai~l~~~~~~~l--~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~--~~~~l~~f~~IF~~L~kl~~   78 (97)
T PF12755_consen    3 RKGGLIGLAAVAIALGKDISKYL--DEILPPVLKCFDDQDSRVRYYACEALYNISKVA--RGEILPYFNEIFDALCKLSA   78 (97)
T ss_pred             hhHHHHHHHHHHHHchHhHHHHH--HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHc
Confidence            44555556555443333  2222  347899999999999999999999999999752  223332  366788899999


Q ss_pred             CCChhHHHHH
Q 044999          273 GPDSTGKEIS  282 (461)
Q Consensus       273 ~~~~~~~~~a  282 (461)
                      +.++.|+..|
T Consensus        79 D~d~~Vr~~a   88 (97)
T PF12755_consen   79 DPDENVRSAA   88 (97)
T ss_pred             CCchhHHHHH
Confidence            9999988755

>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle

Probab=96.70  E-value=0.0092  Score=48.42  Aligned_cols=144  Identities=19%  Similarity=0.165  Sum_probs=98.2

Q ss_pred             HHHHHHHhc--CCChHHHHHHHHHHHHhhCChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCchh--HHH
Q 044999          141 LEIVIDLLN--SCNDGTRRYLLEILSALALLREVRRVLICLGGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRA--RRL  216 (461)
Q Consensus       141 i~~L~~ll~--~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~--~~~  216 (461)
                      ++.++..+.  ...+++|..+.-++..+-  +..+..+.+ -+-+.+-..+...+.+-...+..++..+-...+.  ...
T Consensus         5 l~~lL~~L~~~~~~~~~r~~a~v~l~k~l--~~~~~~~~~-~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l   81 (157)
T PF11701_consen    5 LDTLLTSLDMLRQPEEVRSHALVILSKLL--DAAREEFKE-KISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSEL   81 (157)
T ss_dssp             CCHHHHHHHCTTTSCCHHHHHHHHHHHHH--HHHHHHHHH-HHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHH
T ss_pred             HHHHHHHhcccCCCHhHHHHHHHHHHHHH--HHhHHHHHH-HHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHH
Confidence            344555444  356689999988888884  333333322 1223333344443345666777888887776666  555


Q ss_pred             HHhcCChHHHHHhcc--cCCHHHHHHHHHHHHHHhcCccchhhhhhcCCHHHHHHHhCC-CChh-HHHHHHHHHHH
Q 044999          217 LVELGVIPGLVELFH--IGDWTTKLVAGNTLGVVAAHVEYITPVAEAGAIPLYAELLQG-PDST-GKEISEDVFCI  288 (461)
Q Consensus       217 ~~~~~~i~~L~~ll~--~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~ll~~-~~~~-~~~~a~~~L~~  288 (461)
                      +...|+.+.++.++.  .++...+..++.+|..-|.+...|..+.++| ++.|-+.++. ++.. ++..|+-.|+.
T Consensus        82 ~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d~~~r~~I~~~~-~~~L~~~~~~~~~~~~ir~~A~v~L~K  156 (157)
T PF11701_consen   82 FLSEGFLESLLPLASRKSKDRKVQKAALELLSAACIDKSCRTFISKNY-VSWLKELYKNSKDDSEIRVLAAVGLCK  156 (157)
T ss_dssp             CCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTSHHHHHCCHHHC-HHHHHHHTTTCC-HH-CHHHHHHHHHH
T ss_pred             HhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHccHHHHHHHHHHH-HHHHHHHHccccchHHHHHHHHHHHhc
Confidence            667889999999999  7888999999999988888877777777777 9999999964 4555 78877777654

Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.

>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.68  E-value=0.052  Score=53.96  Aligned_cols=209  Identities=14%  Similarity=0.079  Sum_probs=139.2

Q ss_pred             HhHHHHHHHhhcCCHHHHHHHHHHHH-hhcCCCchhHHHhhHHHHHHhhccCCCCCCCcHHHHHH-HHHHHHHHHhcCCc
Q 044999           10 EAFNRFEQAVVSGSEALQVKALTKLA-RVSKFAPQDILAATIPILARLLGENNFSGNLTRSIQQA-AAYCLKQIASQADG   87 (461)
Q Consensus        10 ~~~~~l~~ll~~~~~~~~~~a~~~l~-~la~~~~~~~l~~~i~~l~~~l~~~~~~~~~~~~~~~~-a~~~L~~l~~~~~~   87 (461)
                      ..++.|..+..-..+.-+..+..+|. .+.  -......+.++.+.+.+..    +.  ...+.. ++.++.+|++. ++
T Consensus       504 ~~~~aLlrl~~~q~e~akl~~~~aL~~~i~--f~~~~~~~v~~~~~s~~~~----d~--~~~en~E~L~altnLas~-s~  574 (748)
T KOG4151|consen  504 GGYEALLRLGQQQFEEAKLKWYHALAGKID--FPGERSYEVVKPLDSALHN----DE--KGLENFEALEALTNLASI-SE  574 (748)
T ss_pred             cHHHHHHHHHHHhchHHHHHHHHHHhhhcC--CCCCchhhhhhhhcchhhh----hH--HHHHHHHHHHHhhcccCc-ch
Confidence            34556666666666666776666666 333  1111122366777777764    32  223333 89999999986 55


Q ss_pred             hhHHHHHhcCCHHHHHhcCCCCCHHHHHHHHHHHHHHhccChhhHHHHHH-cCCHHHHHHHhcCCChHHHHHHHHHHHHh
Q 044999           88 ALATEIGQSGVINSVLRLFPQSDDSFRTVLVKCLRVFVTFGNENRVIVAR-NGGLEIVIDLLNSCNDGTRRYLLEILSAL  166 (461)
Q Consensus        88 ~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~-~g~i~~L~~ll~~~~~~~~~~a~~~L~~l  166 (461)
                      ..+..+...-+++.+-.++...++..|..++.++.||..+..-....+.+ ....+.....+...+......++.++..+
T Consensus       575 s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~~E~~~lA~a~a~a~I  654 (748)
T KOG4151|consen  575 SDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVADEKFELAGAGALAAI  654 (748)
T ss_pred             hhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhhhhHHhhhccccccch
Confidence            66666878777788888888889998999999999999877666677776 55677777777776667777777777756


Q ss_pred             h-CChHHHH-HHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCchh-HHHHHhcCChHHHH
Q 044999          167 A-LLREVRR-VLICLGGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRA-RRLLVELGVIPGLV  227 (461)
Q Consensus       167 ~-~~~~~~~-~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~-~~~~~~~~~i~~L~  227 (461)
                      . ....... ..-...+...++..+.+++++++.+.+....|+...... ...+.+...++.+.
T Consensus       655 ~sv~~n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~~~~~~ei~~~~~~~~~~~~l~  718 (748)
T KOG4151|consen  655 TSVVENHCSRILELLEWLEILVRAIQDEDDEIQHRGLVIILNLFEALFEIAEKIFETEVMELLS  718 (748)
T ss_pred             hhcchhhhhhHHHhhcchHHHHHhhcCchhhhhhhhhhhhhhHHHHHHHHHHHhccchHHHHHH
Confidence            5 3333333 222345788889999999999999999988885443333 44444444444333

>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4

Probab=96.65  E-value=0.6  Score=48.04  Aligned_cols=182  Identities=13%  Similarity=0.081  Sum_probs=111.3

Q ss_pred             HHHhcCCHHHHHhcCCCCC-----HHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhc----CCC----hHHHHH
Q 044999           92 EIGQSGVINSVLRLFPQSD-----DSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLN----SCN----DGTRRY  158 (461)
Q Consensus        92 ~~~~~~~l~~L~~ll~~~~-----~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll~----~~~----~~~~~~  158 (461)
                      .+.+.|++..+++++.+-.     .. ....+.-|...+..-+.+|+.+.+.|+++.|++.+.    ...    +.+.+.
T Consensus       112 v~~~~gGL~~ll~~l~~~~~~~~~~~-ll~~llkLL~~c~Kv~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~  190 (802)
T PF13764_consen  112 VLAECGGLEVLLSRLDSIRDFSRGRE-LLQVLLKLLRYCCKVKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQ  190 (802)
T ss_pred             HhhcCCCHHHHHHHHHhhccccCcHH-HHHHHHHHHHHHHhhHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHH
Confidence            4557899999998886422     22 223333444555566799999999999999998663    333    466777


Q ss_pred             HHHHHHHhhCChHH--HH---HHHhc--------CCHHHHHHHHcCC----CHHHHHHHHHHHHHhhcCchh-HHHHHhc
Q 044999          159 LLEILSALALLREV--RR---VLICL--------GGLRYLVEAVSFG----SMVSRERACQAIGLLAVTGRA-RRLLVEL  220 (461)
Q Consensus       159 a~~~L~~l~~~~~~--~~---~~~~~--------~~l~~l~~~l~~~----~~~~~~~a~~~L~~l~~~~~~-~~~~~~~  220 (461)
                      .+.++..+......  ..   .....        .-+..+++.+.+.    ++.+....+++|..|+...+. .+.+++ 
T Consensus       191 LL~IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~-  269 (802)
T PF13764_consen  191 LLEIIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVE-  269 (802)
T ss_pred             HHHHHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHH-
Confidence            77776666522211  11   11111        1366677777655    578899999999999998887 555544 


Q ss_pred             CChHHHHHhcc---cCCHHHHHHHHHHHHHHhcC-------ccchhhhhhcCCHHHHHHHhCCCChh
Q 044999          221 GVIPGLVELFH---IGDWTTKLVAGNTLGVVAAH-------VEYITPVAEAGAIPLYAELLQGPDST  277 (461)
Q Consensus       221 ~~i~~L~~ll~---~~~~~~~~~a~~~L~~l~~~-------~~~~~~~~~~g~i~~L~~ll~~~~~~  277 (461)
                       .+...+++=+   ...++- ...+.+++.++..       ...+..+++.|++...++.+...-|.
T Consensus       270 -~F~p~l~f~~~D~~~~~~~-~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P~  334 (802)
T PF13764_consen  270 -HFKPYLDFDKFDEEHSPDE-QFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHFPS  334 (802)
T ss_pred             -HHHHhcChhhcccccCchH-HHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCcc
Confidence             1222222111   111111 2335566666655       23467788889998888877655443

>KOG1248 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.64  E-value=1.1  Score=46.98  Aligned_cols=228  Identities=13%  Similarity=0.128  Sum_probs=141.8

Q ss_pred             HHHHHHc-CCCHHHHHHHHHHHHHhhcCchhHHHHHh--cCChHHHHHhcccCCHHHHHHHHHHHHHHhcCcc-chhhhh
Q 044999          184 YLVEAVS-FGSMVSRERACQAIGLLAVTGRARRLLVE--LGVIPGLVELFHIGDWTTKLVAGNTLGVVAAHVE-YITPVA  259 (461)
Q Consensus       184 ~l~~~l~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~--~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~-~~~~~~  259 (461)
                      .+..... +.+..+|..+.+.|..++..+.......+  ......+.+-+++.....+...+.+|..|-.... .-..++
T Consensus       657 ~v~~~~e~~~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i  736 (1176)
T KOG1248|consen  657 TVDPEFENSSSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLI  736 (1176)
T ss_pred             HhhHHhhccccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHH
Confidence            3344443 44789999999999999988443322222  2244555556666677778887888877765522 111222


Q ss_pred             hcCCHHHHHHHhCCCChhHHHHHHHHHHHhc-----cCcc-cH-HHHHHHHHHHhccC--C--HHHHHHHHHHHHHhhCC
Q 044999          260 EAGAIPLYAELLQGPDSTGKEISEDVFCILA-----VSEA-NA-NAIAEHLVRILREG--D--NEANAAAADVLWDLAGY  328 (461)
Q Consensus       260 ~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~-----~~~~-~~-~~i~~~l~~ll~~~--~--~~~~~~a~~~L~~l~~~  328 (461)
                      . ..++-++-.++..+...++.+..+|..+.     ..+. .+ ...++..+.++.-+  .  ..+....+-++..+...
T Consensus       737 ~-k~I~EvIL~~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e  815 (1176)
T KOG1248|consen  737 P-KLIPEVILSLKEVNVKARRNAFALLVFIGAIQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQE  815 (1176)
T ss_pred             H-HHHHHHHHhcccccHHHHhhHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHH
Confidence            1 22444444447778888999888888775     1111 12 33334455554433  2  22222224444444422


Q ss_pred             -CCchhHHhhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcC-ChhhHHHHHhCCChHHHHHhccCCCHHHHHHHHHHHHH
Q 044999          329 -KHSVPVIRNSGAIPILVNLLRGENDEVREKVSGAIAQLSY-NEADRVALADAGAVPIMIELLHDESEELRDNAAESLIN  406 (461)
Q Consensus       329 -~~~~~~l~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~-~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~  406 (461)
                       ......-.-.+.+..+..++.+.+++++..|+..+..++. .|+..-.......+|.+..+.++....++..+...|..
T Consensus       816 ~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~Llek  895 (1176)
T KOG1248|consen  816 FKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKIKVRKKVRLLLEK  895 (1176)
T ss_pred             HhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence             2222333334566777788889999999999999999988 66654444444578889998888899999999998888


Q ss_pred             hcCCCc
Q 044999          407 FSEDPL  412 (461)
Q Consensus       407 l~~~~~  412 (461)
                      |.+...
T Consensus       896 Lirkfg  901 (1176)
T KOG1248|consen  896 LIRKFG  901 (1176)
T ss_pred             HHHHhC
Confidence            876654

>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=96.64  E-value=0.0053  Score=46.24  Aligned_cols=70  Identities=21%  Similarity=0.302  Sum_probs=59.7

Q ss_pred             CHHHHHhcC-CCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHhh
Q 044999           98 VINSVLRLF-PQSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLNSCNDGTRRYLLEILSALA  167 (461)
Q Consensus        98 ~l~~L~~ll-~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~  167 (461)
                      .+..|+++| ++.++.+...|+.=+..++...|..+..+.+.|+-..+++++.++|++++..|+.++..+.
T Consensus        44 llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm  114 (119)
T PF11698_consen   44 LLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLM  114 (119)
T ss_dssp             HHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence            478888998 4557777888888888999988999999999999999999999999999999999987764

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=96.62  E-value=0.19  Score=50.68  Aligned_cols=345  Identities=11%  Similarity=0.096  Sum_probs=178.8

Q ss_pred             HHHHHHHHHHHHhcCCchhHHHHHhcCCHHH---HHhcCCCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHH
Q 044999           71 QQAAAYCLKQIASQADGALATEIGQSGVINS---VLRLFPQSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDL  147 (461)
Q Consensus        71 ~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~---L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~l  147 (461)
                      |+.+..+|--|.+  .-+....+.+.|.-.-   +.+.-..++.-..-.+.+.++.|+.++ .....|++.||+..|+..
T Consensus       326 ~~~~~q~l~~lge--y~e~lpv~~~~g~~~~~~~~~~~~q~~d~~l~~~~~k~~~~l~~h~-kfa~~fv~~~gi~kll~v  402 (1516)
T KOG1832|consen  326 EKYCIQCLEILGE--YVEVLPVLHEKGVDVCIVLLERTSQLDDSPLLPDVMKLICALAAHR-KFAAMFVERRGILKLLAV  402 (1516)
T ss_pred             HHHHHHHHHHHHh--HHHHHHHHHHhCchhhhhhhhhhhccccccccHHHHHHHHHHHHhh-HHHHHHHHhhhhHHHhcC
Confidence            3447777777776  4444445555554222   222222233323445566666677555 455677788887777664


Q ss_pred             hcCCChHHHHHHHHHHHHhhCChHHHHHHHhc------CCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCchhHHHHHhcC
Q 044999          148 LNSCNDGTRRYLLEILSALALLREVRRVLICL------GGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRARRLLVELG  221 (461)
Q Consensus       148 l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~------~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~  221 (461)
                      =+-+.  .-...-.+|+.+.......+.+...      .++..-+.++......-+..+...+.-.-.....-..|-..+
T Consensus       403 pr~s~--~~~g~s~cly~~~~~q~~mervc~~p~~v~~~vv~~~~~l~~cs~~~~~~~~~~ff~~~f~frail~~fd~~d  480 (1516)
T KOG1832|consen  403 PRVSE--TFYGLSSCLYTIGSLQGIMERVCALPLVVIHQVVKLAIELLDCSQDQARKNSALFFAAAFVFRAILDAFDAQD  480 (1516)
T ss_pred             CCchh--hhhhHHHHHHHHhhhhhHHHHHhhccHHHHHHHHHHHHHHHhcchhhccchHHHHHHHHHHHHHHHHHHhhhh
Confidence            33221  1122234555555444443333322      345555666665443334333333222111111133334455


Q ss_pred             ChHHHHHhccc--------CC-----------HHHHHHHHHHHHHHhc-----C-ccchhhhhhcCCHHHHHHHhCCCC-
Q 044999          222 VIPGLVELFHI--------GD-----------WTTKLVAGNTLGVVAA-----H-VEYITPVAEAGAIPLYAELLQGPD-  275 (461)
Q Consensus       222 ~i~~L~~ll~~--------~~-----------~~~~~~a~~~L~~l~~-----~-~~~~~~~~~~g~i~~L~~ll~~~~-  275 (461)
                      .++.|+.+++.        .+           ...-.+.|.+|+..-.     . +..++.-+..|.....+.-+.... 
T Consensus       481 ~l~~l~~~~~~~~~~~~~n~d~~l~e~~i~ss~Q~~~htC~alR~Yf~AHl~Ikve~~~k~~~~r~~~g~~~~~i~~~~~  560 (1516)
T KOG1832|consen  481 SLQKLLAILKDAASVTGANTDRSLPEVMISSSKQMAFHTCFALRQYFRAHLLIKVESIRKSRISRGGVGSSMKNIRAAYK  560 (1516)
T ss_pred             HHHHHHHHHHHHHHHhccCcCccccHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhhhcccCCCCccccccccCCC
Confidence            66666666652        11           1223355666654321     1 333555555555555444333221 


Q ss_pred             -----hhHHHHHHHHHHHhc-cCcc-------cHHHHH-----HHHHHHhccC--------CHHHHHHHHHHHHHhhCCC
Q 044999          276 -----STGKEISEDVFCILA-VSEA-------NANAIA-----EHLVRILREG--------DNEANAAAADVLWDLAGYK  329 (461)
Q Consensus       276 -----~~~~~~a~~~L~~l~-~~~~-------~~~~i~-----~~l~~ll~~~--------~~~~~~~a~~~L~~l~~~~  329 (461)
                           .+..+..++-+..+. ..+.       ..+.+.     ..++.+....        ..+....|+..|..+..-|
T Consensus       561 P~~~s~~~~e~I~~q~e~~~~~gp~f~~~~w~~aenflkls~v~~~L~l~~~~~~w~~~spR~d~~~~Al~vL~i~t~iP  640 (1516)
T KOG1832|consen  561 PLDISNEAVEAIFLQLEKDRRLGPTFVKAQWPAAENFLKLSGVVTMLELCQTPPVWRYLSPRHDLLQYALGVLHIVTSIP  640 (1516)
T ss_pred             cchhhhhHHHHHHHHHHHHHHhChhhhhhcchHHHHHHHhHHHHHHHHHHhcCccccccCcchHHHHHHHhheeeeEecc
Confidence                 112222222222211 1110       011111     3333333211        2356678888888887778


Q ss_pred             CchhHHhhc--------CCHHHHHHhhc----CCCHHHHHHHHHHHHHhcC-ChhhHH----------------------
Q 044999          330 HSVPVIRNS--------GAIPILVNLLR----GENDEVREKVSGAIAQLSY-NEADRV----------------------  374 (461)
Q Consensus       330 ~~~~~l~~~--------g~i~~L~~ll~----~~~~~v~~~a~~~L~~l~~-~~~~~~----------------------  374 (461)
                      +.+..+...        .++..+++...    -.+++++..|+.+|-|+.. .|+++.                      
T Consensus       641 ~iq~~La~~~~~n~~aydGiaIiL~~a~g~~~i~Dpei~~~AL~vIincVc~pp~~r~s~i~~v~S~~g~~r~~l~~~~k  720 (1516)
T KOG1832|consen  641 DIQKALAHATLSNNRAYDGIAIILDAANGSNSIVDPEIIQPALNVIINCVCPPPTTRPSTIVAVGSQSGDRRIFLGAGTK  720 (1516)
T ss_pred             hHHHHHHHHHhhcccccCceEEEeecccccccccCHHHHHHHHhhhheeecCCCCcchhhhhhccccCCCccccccCCCc
Confidence            887776621        24444444332    1368999999999999888 434322                      


Q ss_pred             -------------HHHhCCChHHHHHhccCC-----CHHHHHHHHHHHHHhcCCCcchHHHHHh
Q 044999          375 -------------ALADAGAVPIMIELLHDE-----SEELRDNAAESLINFSEDPLQHERISEA  420 (461)
Q Consensus       375 -------------~~~~~~~i~~L~~ll~~~-----~~~~~~~a~~~L~~l~~~~~~~~~l~~~  420 (461)
                                   .+...+||..|+++++..     ...+|..|+.+|.-|+++++.+..+.+.
T Consensus       721 s~~le~~l~~mw~~Vr~ndGIkiLl~Ll~~k~P~t~aD~IRalAc~~L~GLaR~~tVrQIltKL  784 (1516)
T KOG1832|consen  721 SAKLEQVLRQMWEAVRGNDGIKILLKLLQYKNPPTTADCIRALACRVLLGLARDDTVRQILTKL  784 (1516)
T ss_pred             hHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCCcHHHHHHHHHHHHhccccCcHHHHHHHhC
Confidence                         223457899999999653     4678999999999999999988777654

>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]

Probab=96.60  E-value=0.41  Score=41.39  Aligned_cols=196  Identities=17%  Similarity=0.149  Sum_probs=124.5

Q ss_pred             hcCCHHHHHHHHcCC--CHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhcccCCHHHHHHHHHHHHHHhcCccc-
Q 044999          178 CLGGLRYLVEAVSFG--SMVSRERACQAIGLLAVTGRARRLLVELGVIPGLVELFHIGDWTTKLVAGNTLGVVAAHVEY-  254 (461)
Q Consensus       178 ~~~~l~~l~~~l~~~--~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~-  254 (461)
                      ....++.++..+.+.  .+-+|-.|..+|+.+.          .....+.+-++.+++...+++.+..++..+-..... 
T Consensus        65 ~~~Av~~l~~vl~desq~pmvRhEAaealga~~----------~~~~~~~l~k~~~dp~~~v~ETc~lAi~rle~~~~~~  134 (289)
T KOG0567|consen   65 DEDAVPVLVEVLLDESQEPMVRHEAAEALGAIG----------DPESLEILTKYIKDPCKEVRETCELAIKRLEWKDIID  134 (289)
T ss_pred             cchhhHHHHHHhcccccchHHHHHHHHHHHhhc----------chhhHHHHHHHhcCCccccchHHHHHHHHHHHhhccc
Confidence            345678888877665  4567778888888874          223455555566566666777666666665432110 


Q ss_pred             ----hhhh--------hhcCCHHHHHHHhCCCCh--hHHHHHHHHHHHhccCcccHHHHHHHHHHHhccCCHHHHHHHHH
Q 044999          255 ----ITPV--------AEAGAIPLYAELLQGPDS--TGKEISEDVFCILAVSEANANAIAEHLVRILREGDNEANAAAAD  320 (461)
Q Consensus       255 ----~~~~--------~~~g~i~~L~~ll~~~~~--~~~~~a~~~L~~l~~~~~~~~~i~~~l~~ll~~~~~~~~~~a~~  320 (461)
                          ...+        ...+-+..+-..+.+.+.  --|+.+...|.|+....     -+..+.+-+..++.-.|..++.
T Consensus       135 ~~~~~~p~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~g~Ee-----aI~al~~~l~~~SalfrhEvAf  209 (289)
T KOG0567|consen  135 KIANSSPYISVDPAPPANLSSVHELRAELLDETKPLFERYRAMFYLRNIGTEE-----AINALIDGLADDSALFRHEVAF  209 (289)
T ss_pred             cccccCccccCCCCCccccccHHHHHHHHHhcchhHHHHHhhhhHhhccCcHH-----HHHHHHHhcccchHHHHHHHHH
Confidence                0000        111224445554444422  23444555555543321     1245566666667788889999


Q ss_pred             HHHHhhCCCCchhHHhhcCCHHHHHHhhcC--CCHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhccCCCHHHHH
Q 044999          321 VLWDLAGYKHSVPVIRNSGAIPILVNLLRG--ENDEVREKVSGAIAQLSYNEADRVALADAGAVPIMIELLHDESEELRD  398 (461)
Q Consensus       321 ~L~~l~~~~~~~~~l~~~g~i~~L~~ll~~--~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~  398 (461)
                      +++.|-.          .-.++.|.+.|.+  .++-||..|+.+|+.++...          +++.|.+++.+..+-+++
T Consensus       210 VfGQl~s----------~~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~e~----------~~~vL~e~~~D~~~vv~e  269 (289)
T KOG0567|consen  210 VFGQLQS----------PAAIPSLIKVLLDETEHPMVRHEAAEALGAIADED----------CVEVLKEYLGDEERVVRE  269 (289)
T ss_pred             HHhhccc----------hhhhHHHHHHHHhhhcchHHHHHHHHHHHhhcCHH----------HHHHHHHHcCCcHHHHHH
Confidence            9988843          3467888888764  46889999999999998633          378888899888999999


Q ss_pred             HHHHHHHHhc
Q 044999          399 NAAESLINFS  408 (461)
Q Consensus       399 ~a~~~L~~l~  408 (461)
                      .+..+|-.+-
T Consensus       270 sc~valdm~e  279 (289)
T KOG0567|consen  270 SCEVALDMLE  279 (289)
T ss_pred             HHHHHHHHHH
Confidence            8888887664

>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]

Probab=96.55  E-value=0.12  Score=48.41  Aligned_cols=185  Identities=11%  Similarity=0.036  Sum_probs=106.9

Q ss_pred             HHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHhhC----ChHH----HHHHHhcCCHHHH
Q 044999          114 RTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLNSCNDGTRRYLLEILSALAL----LREV----RRVLICLGGLRYL  185 (461)
Q Consensus       114 ~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~----~~~~----~~~~~~~~~l~~l  185 (461)
                      +..+.+...-+.-+..-......-......+...+.+.....|..+.+++.+++.    +-++    ...+... .+..+
T Consensus       408 ~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~-ll~~~  486 (728)
T KOG4535|consen  408 KAAASRALGVYVLHPCLRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSGL-LLLKM  486 (728)
T ss_pred             HHHHHhhceeEEeccchhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHHH-HHHHH
Confidence            3334444443333333333334444556667777777778899999999999872    1112    1111111 22233


Q ss_pred             HHHHc---CCCHHHHHHHHHHHHHhhcCchh-H-HH--HHhcCChHHHHH-hcccCCHHHHHHHHHHHHHHhcCccch--
Q 044999          186 VEAVS---FGSMVSRERACQAIGLLAVTGRA-R-RL--LVELGVIPGLVE-LFHIGDWTTKLVAGNTLGVVAAHVEYI--  255 (461)
Q Consensus       186 ~~~l~---~~~~~~~~~a~~~L~~l~~~~~~-~-~~--~~~~~~i~~L~~-ll~~~~~~~~~~a~~~L~~l~~~~~~~--  255 (461)
                      ...-.   ..+..++..+.++|+|+...-+. . -.  ....+.+..++. ..-.....++-++|.+++||-.++..+  
T Consensus       487 ~~~A~~~~Ad~dkV~~navraLgnllQvlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq  566 (728)
T KOG4535|consen  487 LRSAIEASADKDKVKSNAVRALGNLLQFLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPLQ  566 (728)
T ss_pred             HHHHHHhhhhhhhhhhHHHHHHhhHHHHHHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCcccccc
Confidence            32221   22568899999999998654332 1 00  111122222222 222446689999999999999885442  


Q ss_pred             hhhhhcCCHHHHHHHhCCC-ChhHHHHHHHHHHHhccCcccHHHH
Q 044999          256 TPVAEAGAIPLYAELLQGP-DSTGKEISEDVFCILAVSEANANAI  299 (461)
Q Consensus       256 ~~~~~~g~i~~L~~ll~~~-~~~~~~~a~~~L~~l~~~~~~~~~i  299 (461)
                      ..-.....++.|..++.+. +-.+|.+|+.+|..-......-..+
T Consensus       567 ~~~wA~~~F~~L~~Lv~~~~NFKVRi~AA~aL~vp~~re~~~d~~  611 (728)
T KOG4535|consen  567 TAPWASQAFNALTSLVTSCKNFKVRIRAAAALSVPGKREQYGDQY  611 (728)
T ss_pred             CCCchHHHHHHHHHHHHHhccceEeehhhhhhcCCCCcccchhHH
Confidence            2222335678888888655 7899999999998776655544433

>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain

Probab=96.45  E-value=0.15  Score=46.60  Aligned_cols=173  Identities=15%  Similarity=0.127  Sum_probs=107.0

Q ss_pred             CcHHHhHHHHH-HHhhcCCHHHHHHHHHHHHhhc--CCCchhHHHh-hHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHH
Q 044999            6 TNWEEAFNRFE-QAVVSGSEALQVKALTKLARVS--KFAPQDILAA-TIPILARLLGENNFSGNLTRSIQQAAAYCLKQI   81 (461)
Q Consensus         6 ~~~~~~~~~l~-~ll~~~~~~~~~~a~~~l~~la--~~~~~~~l~~-~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l   81 (461)
                      ...+..++.++ ..+.+.++.+|..|.+++|-.+  +.    .+.. .++.+.+.++.      ++..++..|+.++..+
T Consensus        22 ~~l~~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~----~~a~~~l~l~~~~~~~------~~~~v~~~al~~l~Dl   91 (298)
T PF12719_consen   22 ISLESLLDSLILPAVQSSDPAVRELALKCLGLCCLLDK----ELAKEHLPLFLQALQK------DDEEVKITALKALFDL   91 (298)
T ss_pred             chHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCh----HHHHHHHHHHHHHHHh------CCHHHHHHHHHHHHHH
Confidence            34557777765 8889999999999999999999  44    2333 77888888864      3566777799999988


Q ss_pred             Hhc-CCchhHHH------HHhcCCHHHHHhcCCCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhcC----
Q 044999           82 ASQ-ADGALATE------IGQSGVINSVLRLFPQSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLNS----  150 (461)
Q Consensus        82 ~~~-~~~~~~~~------~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll~~----  150 (461)
                      ... |.......      ......+..+.+.+.+.+++++..++..+..|...+.-.-    ....+..|+-+.-+    
T Consensus        92 l~~~g~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~----~~~vL~~Lll~yF~p~t~  167 (298)
T PF12719_consen   92 LLTHGIDIFDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISD----PPKVLSRLLLLYFNPSTE  167 (298)
T ss_pred             HHHcCchhccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCc----HHHHHHHHHHHHcCcccC
Confidence            863 21111111      1123457778888888899999999999997665442221    11223333333222    


Q ss_pred             CChHHHHHHHHHHHHhhCChHHHHHHHhcCCHHHHHHHHcCC
Q 044999          151 CNDGTRRYLLEILSALALLREVRRVLICLGGLRYLVEAVSFG  192 (461)
Q Consensus       151 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~~l~~~  192 (461)
                      .+..+|..-...+-..+......+..+...+++.+-.+.+..
T Consensus       168 ~~~~LrQ~L~~Ffp~y~~s~~~~Q~~l~~~f~~~l~~~~~~~  209 (298)
T PF12719_consen  168 DNQRLRQCLSVFFPVYASSSPENQERLAEAFLPTLRTLSNAP  209 (298)
T ss_pred             CcHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhCc
Confidence            233555555555556664333333444455666666665543

>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function

Probab=96.45  E-value=0.024  Score=47.36  Aligned_cols=117  Identities=15%  Similarity=0.221  Sum_probs=82.7

Q ss_pred             CCChhHHHHHHHHHHHhccCcccHHHHH---------------------HHHHHHhcc------CCHHHHHHHHHHHHHh
Q 044999          273 GPDSTGKEISEDVFCILAVSEANANAIA---------------------EHLVRILRE------GDNEANAAAADVLWDL  325 (461)
Q Consensus       273 ~~~~~~~~~a~~~L~~l~~~~~~~~~i~---------------------~~l~~ll~~------~~~~~~~~a~~~L~~l  325 (461)
                      +.+......++..|.|++..++.+..+.                     ..|++.+..      ....--...+.++.|+
T Consensus         6 ~~~~~~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~Nl   85 (192)
T PF04063_consen    6 DPKSPLADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANL   85 (192)
T ss_pred             CCCcchHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHh
Confidence            3344556667777788877666554332                     556666544      2344566888999999


Q ss_pred             hCCCCchhHHhhcC--C--HHHHHHhhcCCCHHHHHHHHHHHHHhcCChhhHHHHHhC---CChHHHHHhc
Q 044999          326 AGYKHSVPVIRNSG--A--IPILVNLLRGENDEVREKVSGAIAQLSYNEADRVALADA---GAVPIMIELL  389 (461)
Q Consensus       326 ~~~~~~~~~l~~~g--~--i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~---~~i~~L~~ll  389 (461)
                      +..++.++.+....  .  +..|+.++...+..-|..++.+|.|+|.+.+....+...   +++|.|+--+
T Consensus        86 S~~~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd~~~H~~LL~~~~~~iLp~LLlPL  156 (192)
T PF04063_consen   86 SQLPEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFDTDSHEWLLSDDEVDILPYLLLPL  156 (192)
T ss_pred             cCCHHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhccHhHHHHhcCchhhhhHHHHHhhc
Confidence            99999999999543  4  778888888887767778899999999977777777663   4455555544

It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).

>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle

Probab=96.45  E-value=0.013  Score=47.59  Aligned_cols=139  Identities=15%  Similarity=0.150  Sum_probs=96.2

Q ss_pred             HHHHHHhC--CCChhHHHHHHHHHHHhccCcccHHHHH----HHHHHHhccCCHHHHHHHHHHHHHhhCC-CCchhH-Hh
Q 044999          265 PLYAELLQ--GPDSTGKEISEDVFCILAVSEANANAIA----EHLVRILREGDNEANAAAADVLWDLAGY-KHSVPV-IR  336 (461)
Q Consensus       265 ~~L~~ll~--~~~~~~~~~a~~~L~~l~~~~~~~~~i~----~~l~~ll~~~~~~~~~~a~~~L~~l~~~-~~~~~~-l~  336 (461)
                      ..++..+.  ..++++|..+.-++..+-  +..+....    +.+-..+..++.+-...+..++..+-.. ++.... +.
T Consensus         6 ~~lL~~L~~~~~~~~~r~~a~v~l~k~l--~~~~~~~~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~~   83 (157)
T PF11701_consen    6 DTLLTSLDMLRQPEEVRSHALVILSKLL--DAAREEFKEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSELFL   83 (157)
T ss_dssp             CHHHHHHHCTTTSCCHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHHCC
T ss_pred             HHHHHHhcccCCCHhHHHHHHHHHHHHH--HHhHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHHHh
Confidence            34444443  357889999888888773  33333332    5555556555445666777777777643 444444 44


Q ss_pred             hcCCHHHHHHhhc--CCCHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhcc-CCCHH-HHHHHHHHHHH
Q 044999          337 NSGAIPILVNLLR--GENDEVREKVSGAIAQLSYNEADRVALADAGAVPIMIELLH-DESEE-LRDNAAESLIN  406 (461)
Q Consensus       337 ~~g~i~~L~~ll~--~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~-~~~~~-~~~~a~~~L~~  406 (461)
                      ..|+++.+..++.  ..+..++..++.+|..=|.++.+|..+.+++ ++.|.+..+ ++++. ++..|+-.|+.
T Consensus        84 ~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d~~~r~~I~~~~-~~~L~~~~~~~~~~~~ir~~A~v~L~K  156 (157)
T PF11701_consen   84 SEGFLESLLPLASRKSKDRKVQKAALELLSAACIDKSCRTFISKNY-VSWLKELYKNSKDDSEIRVLAAVGLCK  156 (157)
T ss_dssp             TTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTSHHHHHCCHHHC-HHHHHHHTTTCC-HH-CHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHccHHHHHHHHHHH-HHHHHHHHccccchHHHHHHHHHHHhc
Confidence            7788999999999  7788899999998888888888777777764 999999994 56666 78888877764

Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.

>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function

Probab=96.40  E-value=0.027  Score=47.03  Aligned_cols=118  Identities=9%  Similarity=-0.021  Sum_probs=82.5

Q ss_pred             cCCHHHHHHHHHHHHHHhcCccchhhhhhc----------------CCHHHHHHHhCC------CChhHHHHHHHHHHHh
Q 044999          232 IGDWTTKLVAGNTLGVVAAHVEYITPVAEA----------------GAIPLYAELLQG------PDSTGKEISEDVFCIL  289 (461)
Q Consensus       232 ~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~----------------g~i~~L~~ll~~------~~~~~~~~a~~~L~~l  289 (461)
                      ++.......++..|.|++..+.....+...                ..+..|+.++..      ...+-....+.+|.|+
T Consensus         6 ~~~~~~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~Nl   85 (192)
T PF04063_consen    6 DPKSPLADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANL   85 (192)
T ss_pred             CCCcchHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHh
Confidence            344456667788899998886665544432                245667777654      2345567788999999


Q ss_pred             ccCcccHHHHH---------HHHHHHhccCCHHHHHHHHHHHHHhhCCCCchhHHhhc---CCHHHHHHhhc
Q 044999          290 AVSEANANAIA---------EHLVRILREGDNEANAAAADVLWDLAGYKHSVPVIRNS---GAIPILVNLLR  349 (461)
Q Consensus       290 ~~~~~~~~~i~---------~~l~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~---g~i~~L~~ll~  349 (461)
                      +..++.|..+.         ..|+..+.+.+..-|..++.+|.|+|...+....+...   +++|.|+--+.
T Consensus        86 S~~~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd~~~H~~LL~~~~~~iLp~LLlPLa  157 (192)
T PF04063_consen   86 SQLPEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFDTDSHEWLLSDDEVDILPYLLLPLA  157 (192)
T ss_pred             cCCHHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhccHhHHHHhcCchhhhhHHHHHhhcc
Confidence            99999998887         23444556667788889999999999988887777764   34555444443

It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).

>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1

Probab=96.36  E-value=0.076  Score=46.28  Aligned_cols=95  Identities=16%  Similarity=0.188  Sum_probs=79.0

Q ss_pred             HHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhcC-CChHHHHHHHHHHHHhh-CChHHHHHHHhcCCHHHHHHHHcC
Q 044999          114 RTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLNS-CNDGTRRYLLEILSALA-LLREVRRVLICLGGLRYLVEAVSF  191 (461)
Q Consensus       114 ~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll~~-~~~~~~~~a~~~L~~l~-~~~~~~~~~~~~~~l~~l~~~l~~  191 (461)
                      ...+...+-.++--++..+..+.+...++.++.+|+. ..+.++..++.+|..+. .++.+.+.|-+.+|+..++.++++
T Consensus       108 i~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~llk~  187 (257)
T PF08045_consen  108 IALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLLKS  187 (257)
T ss_pred             HHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHHcc
Confidence            3345566667777788999999999999999999954 56788999999888887 889999999999999999999987


Q ss_pred             C--CHHHHHHHHHHHHHhh
Q 044999          192 G--SMVSRERACQAIGLLA  208 (461)
Q Consensus       192 ~--~~~~~~~a~~~L~~l~  208 (461)
                      .  +.+++..++..|.-..
T Consensus       188 ~~~~~~~r~K~~EFL~fyl  206 (257)
T PF08045_consen  188 KSTDRELRLKCIEFLYFYL  206 (257)
T ss_pred             ccccHHHhHHHHHHHHHHH
Confidence            7  6688888888776543

Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].

>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.34  E-value=1.3  Score=44.33  Aligned_cols=66  Identities=12%  Similarity=0.083  Sum_probs=40.7

Q ss_pred             ChHHHHHhcccCCHHHHHHHHHHHHHHhcCccchhhhhhcCCHHHHHHHhCCCChhHHHHHHHHHHHhcc
Q 044999          222 VIPGLVELFHIGDWTTKLVAGNTLGVVAAHVEYITPVAEAGAIPLYAELLQGPDSTGKEISEDVFCILAV  291 (461)
Q Consensus       222 ~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~  291 (461)
                      ..+.+-.++++...-+...|+.++.++...  +-..+..  .+..|-.++.++...+|..|.++|..++.
T Consensus       246 ~~~fl~s~l~~K~emV~~EaArai~~l~~~--~~r~l~p--avs~Lq~flssp~~~lRfaAvRtLnkvAm  311 (865)
T KOG1078|consen  246 LFPFLESCLRHKSEMVIYEAARAIVSLPNT--NSRELAP--AVSVLQLFLSSPKVALRFAAVRTLNKVAM  311 (865)
T ss_pred             HHHHHHHHHhchhHHHHHHHHHHHhhcccc--CHhhcch--HHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence            345555566666667777777777776543  1111111  45666667777777788888887777743

>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D

Probab=96.33  E-value=0.23  Score=46.61  Aligned_cols=237  Identities=16%  Similarity=0.117  Sum_probs=128.5

Q ss_pred             HHHhHHHHHHHhhcC-CHHHHHHHHHHHHhhc-CCCchhHHHh--hHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHh
Q 044999            8 WEEAFNRFEQAVVSG-SEALQVKALTKLARVS-KFAPQDILAA--TIPILARLLGENNFSGNLTRSIQQAAAYCLKQIAS   83 (461)
Q Consensus         8 ~~~~~~~l~~ll~~~-~~~~~~~a~~~l~~la-~~~~~~~l~~--~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~   83 (461)
                      +.+.++.++.-+.++ ...+|..++..|..-+ +++.+..++.  ..+.+++.+..    ..+++ .-..++.++..+..
T Consensus        19 f~Dev~ylld~l~~~~~~s~Rr~sll~La~K~~~~~Fr~~~ra~g~~~~l~~~l~~----~~~d~-~~~l~~a~i~~~l~   93 (361)
T PF07814_consen   19 FADEVEYLLDGLESSSSSSVRRSSLLELASKCADPQFRRQFRAHGLVKRLFKALSD----APDDD-ILALATAAILYVLS   93 (361)
T ss_pred             HHHHHHHHHhhcccCCCccHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHhcc----ccchH-HHHHHHHHHHHHHc
Confidence            556667777777743 4578888888888777 9999999888  89999999964    44433 22223344444444


Q ss_pred             cCCchhHHHHHhcCCHHHHHhcCCC--C---CHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhc---------
Q 044999           84 QADGALATEIGQSGVINSVLRLFPQ--S---DDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLN---------  149 (461)
Q Consensus        84 ~~~~~~~~~~~~~~~l~~L~~ll~~--~---~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll~---------  149 (461)
                      . +......+.+.+.+..+.++++.  .   ..........   ++..    ..+.     .+..+.+.+.         
T Consensus        94 ~-d~~~~~l~~~~~~~~ll~~Ll~~~~~~~~~~~~~~~~~~---~lsk----~~~~-----~~~~~~~~~~~~~~~~~~~  160 (361)
T PF07814_consen   94 R-DGLNMHLLLDRDSLRLLLKLLKVDKSLDVPSDSDSSRKK---NLSK----VQQK-----SRSLCKELLSSGSSWKSPK  160 (361)
T ss_pred             c-CCcchhhhhchhHHHHHHHHhccccccccccchhhhhhh---hhhH----HHHH-----HHHHHHHHHhccccccccC
Confidence            2 44444444455666776777771  1   1110000000   1110    0000     1111222220         


Q ss_pred             CCChHHHHHHHHHHHHhh---------------CChHHHHHHHhcCCHHHHHHHHcC----CC------------HHHHH
Q 044999          150 SCNDGTRRYLLEILSALA---------------LLREVRRVLICLGGLRYLVEAVSF----GS------------MVSRE  198 (461)
Q Consensus       150 ~~~~~~~~~a~~~L~~l~---------------~~~~~~~~~~~~~~l~~l~~~l~~----~~------------~~~~~  198 (461)
                      ......+..|+.++..++               ..+.+++.+...|++..++..+.+    .+            ...-.
T Consensus       161 ~~~lsp~~lall~le~l~~~~~~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l~  240 (361)
T PF07814_consen  161 PPELSPQTLALLALESLVRSLREAGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDLE  240 (361)
T ss_pred             CcccccccHHHHHHHHHHHHHhhcccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHHH
Confidence            111233444444444442               123446677777899999998862    11            12345


Q ss_pred             HHHHHHHHhhcCchh-HHHHHh--cCCh-HHHHHhcc---cCCHHHHHHHHHHHHHHhcC-ccchhhhhhcC
Q 044999          199 RACQAIGLLAVTGRA-RRLLVE--LGVI-PGLVELFH---IGDWTTKLVAGNTLGVVAAH-VEYITPVAEAG  262 (461)
Q Consensus       199 ~a~~~L~~l~~~~~~-~~~~~~--~~~i-~~L~~ll~---~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~g  262 (461)
                      .++++|-+.+...+. +.....  .+.. ..+..++.   .........+++.+.|++.+ ++.+..+...+
T Consensus       241 ~cl~ILEs~T~~~~~nq~~l~~~~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~n~~~c~~~~s~~  312 (361)
T PF07814_consen  241 RCLSILESVTFLSEENQSYLLSHRSSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTNNNPSACEEFASPK  312 (361)
T ss_pred             HHHHHHHHHHhcCccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCCCccchHhhhhhH
Confidence            778888888766654 554444  2222 22222333   22344467888899999988 66666666553

melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.

>KOG1566 consensus Conserved protein Mo25 [Function unknown]

Probab=96.32  E-value=0.72  Score=41.02  Aligned_cols=203  Identities=11%  Similarity=0.080  Sum_probs=143.3

Q ss_pred             HHHhcCCHHHHHhcCCCCCHHHHHHHHHHHHHHhccChhhHHHHHH--cCCHHHHHHHhcCC--ChHHHHHHHHHHHHhh
Q 044999           92 EIGQSGVINSVLRLFPQSDDSFRTVLVKCLRVFVTFGNENRVIVAR--NGGLEIVIDLLNSC--NDGTRRYLLEILSALA  167 (461)
Q Consensus        92 ~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~--~g~i~~L~~ll~~~--~~~~~~~a~~~L~~l~  167 (461)
                      .+..+|.+..+++.+...+.+.+..++....++-......+.-.++  ..-.+.+-.++...  .+++...+-..+....
T Consensus        74 ef~~~~~l~~lI~~l~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~~~~~~~iaL~cg~mlrEci  153 (342)
T KOG1566|consen   74 EFYNADVLSLLIQHLPKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLETNPEILDNLVKGYENTPEIALTCGNMLRECI  153 (342)
T ss_pred             HHHhCCchHHHHHhhhcccchhhhHHHHHHHHHHHhhcCCcchHHHHHHhCHHHHHHHHhhhccchHHHHHHHHHHHHHH
Confidence            5668899999999999888887887777777666533222211111  11122333333333  2566666667777777


Q ss_pred             CChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCchh-HHHHHhcCC----hHHHHHhcccCCHHHHHHHH
Q 044999          168 LLREVRRVLICLGGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRA-RRLLVELGV----IPGLVELFHIGDWTTKLVAG  242 (461)
Q Consensus       168 ~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~-~~~~~~~~~----i~~L~~ll~~~~~~~~~~a~  242 (461)
                      .++...+.+....-......+.+.++-++...|..+...+...+.. ...+...+.    .+.--.++.+++--++..+.
T Consensus       154 rhe~LakiiL~s~~~~~FF~~vq~p~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~Nyvtkrqs~  233 (342)
T KOG1566|consen  154 RHEFLAKIILESTNFEKFFLYVQLPNFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRSENYVTKRQSL  233 (342)
T ss_pred             hhHHHHHHHHcchhHHHHHHHHhccchHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhcccceehHHHHH
Confidence            8888899999999999999999999889999999999888776665 444444332    33356688899999999999


Q ss_pred             HHHHHHhcCccchhhhhh----cCCHHHHHHHhCCCChhHHHHHHHHHHHhccCcc
Q 044999          243 NTLGVVAAHVEYITPVAE----AGAIPLYAELLQGPDSTGKEISEDVFCILAVSEA  294 (461)
Q Consensus       243 ~~L~~l~~~~~~~~~~~~----~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~  294 (461)
                      ..++.+-.+..+...+.+    ..-+..+..+|+++...+|..|-....-+..++.
T Consensus       234 kllg~llldr~N~~~M~kYiss~enLKlmM~llrdkskniQ~eAFhvFKvfvAnpn  289 (342)
T KOG1566|consen  234 KLLGELLLDRSNSAVMTKYISSPENLKLMMNLLRDKSKNIQLEAFHVFKVFVANPN  289 (342)
T ss_pred             HhHHHHHhCCCcHHHHHHHhcCHHHHHHHHHHhhCccccchHHHHHHHHHHhcCCC
Confidence            999998887666554443    2457778888898888888888887777755543

>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]

Probab=96.28  E-value=0.047  Score=55.00  Aligned_cols=142  Identities=13%  Similarity=0.152  Sum_probs=103.9

Q ss_pred             CCHHHHHHHhCCCChhHHHHHHHHHHHhccCcccHHH------HHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCchhHH
Q 044999          262 GAIPLYAELLQGPDSTGKEISEDVFCILAVSEANANA------IAEHLVRILREGDNEANAAAADVLWDLAGYKHSVPVI  335 (461)
Q Consensus       262 g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~------i~~~l~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~l  335 (461)
                      .++|.+++.+...+...+.+-..+|.++-.+-+....      +.|.|++.|.-.+..+|..+..++..+.........-
T Consensus       867 ~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t~  946 (1030)
T KOG1967|consen  867 DIVPILVSKFETAPGSQKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQTE  946 (1030)
T ss_pred             hhHHHHHHHhccCCccchhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccchH
Confidence            5689999998877888888888899888554333211      1188888888899999999999998887543322222


Q ss_pred             hhcCCHHHHHHhhcCCC---HHHHHHHHHHHHHhcC-ChhhHHHHHhCCChHHHHHhccCCCHHHHHHHHHH
Q 044999          336 RNSGAIPILVNLLRGEN---DEVREKVSGAIAQLSY-NEADRVALADAGAVPIMIELLHDESEELRDNAAES  403 (461)
Q Consensus       336 ~~~g~i~~L~~ll~~~~---~~v~~~a~~~L~~l~~-~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~  403 (461)
                      .-.-.+|.+..+-.+.+   ..+|..|+.+|..|.+ -|...-.-.+..++..|+..+.++..-+|..|..+
T Consensus       947 ~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~t 1018 (1030)
T KOG1967|consen  947 HLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDT 1018 (1030)
T ss_pred             HHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHH
Confidence            23346788887776655   5689999999999999 56544444455678888888988888888888765

>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]

Probab=96.26  E-value=0.75  Score=46.76  Aligned_cols=240  Identities=13%  Similarity=0.088  Sum_probs=146.1

Q ss_pred             CHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhcc-cCCHHHHHHHHHHHHHHhcCccchhhhhhcCCHHHHHHHh
Q 044999          193 SMVSRERACQAIGLLAVTGRARRLLVELGVIPGLVELFH-IGDWTTKLVAGNTLGVVAAHVEYITPVAEAGAIPLYAELL  271 (461)
Q Consensus       193 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~ll  271 (461)
                      .+.+..++..++...+........+.+ ..+...+..+. +..+.++..|+.+++..+...-...  ...+++..|..+.
T Consensus       463 ~P~Ll~Ra~~~i~~fs~~~~~~~~~~~-~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~~~vl~~--~~p~ild~L~qla  539 (1005)
T KOG2274|consen  463 SPFLLLRAFLTISKFSSSTVINPQLLQ-HFLNATVNALTMDVPPPVKISAVRAFCGYCKVKVLLS--LQPMILDGLLQLA  539 (1005)
T ss_pred             CHHHHHHHHHHHHHHHhhhccchhHHH-HHHHHHHHhhccCCCCchhHHHHHHHHhccCceeccc--cchHHHHHHHHHc
Confidence            444455666666665554332111111 12333333333 5566677788888877773211111  1135677888888


Q ss_pred             CCCChhHHHHHHHHHHHhcc-CcccHHH----HHHHHHHHh--ccCCHHHHHHHHHHHHHhhCCCCchhHHhhcCCHHHH
Q 044999          272 QGPDSTGKEISEDVFCILAV-SEANANA----IAEHLVRIL--REGDNEANAAAADVLWDLAGYKHSVPVIRNSGAIPIL  344 (461)
Q Consensus       272 ~~~~~~~~~~a~~~L~~l~~-~~~~~~~----i~~~l~~ll--~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L  344 (461)
                      ...+.++......+|+.... +++....    +.|....++  .+.+|.+...+-.++..++....+..-+.+ ..+|.+
T Consensus       540 s~~s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~~~~g~m~e-~~iPsl  618 (1005)
T KOG2274|consen  540 SKSSDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIAANYGPMQE-RLIPSL  618 (1005)
T ss_pred             ccccHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhcchHH-HHHHHH
Confidence            87788888888888888854 4433222    226666665  355788888888888888865555444443 578999


Q ss_pred             HHhhcCCC----HHHHHHHHHHHHHhcC-ChhhHHHHHhCCChHHHHHhc-cCCCHHHHHHHHHHHHHhcCCCcchHHHH
Q 044999          345 VNLLRGEN----DEVREKVSGAIAQLSY-NEADRVALADAGAVPIMIELL-HDESEELRDNAAESLINFSEDPLQHERIS  418 (461)
Q Consensus       345 ~~ll~~~~----~~v~~~a~~~L~~l~~-~~~~~~~~~~~~~i~~L~~ll-~~~~~~~~~~a~~~L~~l~~~~~~~~~l~  418 (461)
                      +..+..+.    .....-++..|..+.+ .|.--....-.-+.|++.+.. ++++.+..+++.++|..+......  .+.
T Consensus       619 isil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~~~e--q~~  696 (1005)
T KOG2274|consen  619 ISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVAKITLHSDDHETLQNATECLRALISVTLE--QLL  696 (1005)
T ss_pred             HHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhHhheeecCChHHHHhHHHHHHHHHhcCHH--HHH
Confidence            99998655    5566677777777777 222222223334678888865 778899999999999988766432  222


Q ss_pred             Hh---hCCchHHhHHHHHHHhhhc
Q 044999          419 EA---IGIPSFQSMQSRLTRIRAS  439 (461)
Q Consensus       419 ~~---~~~~~~~~l~~~l~~~~~~  439 (461)
                      +-   .|.+ ++.+.+-++++-++
T Consensus       697 t~~~e~g~~-~~yImqV~sqLLdp  719 (1005)
T KOG2274|consen  697 TWHDEPGHN-LWYIMQVLSQLLDP  719 (1005)
T ss_pred             hhccCCCcc-HHHHHHHHHHHcCC
Confidence            21   2333 45666656555544

>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=96.25  E-value=0.012  Score=44.26  Aligned_cols=69  Identities=19%  Similarity=0.262  Sum_probs=58.1

Q ss_pred             CHHHHHHhhc-CCCHHHHHHHHHHHHHhcC-ChhhHHHHHhCCChHHHHHhccCCCHHHHHHHHHHHHHhc
Q 044999          340 AIPILVNLLR-GENDEVREKVSGAIAQLSY-NEADRVALADAGAVPIMIELLHDESEELRDNAAESLINFS  408 (461)
Q Consensus       340 ~i~~L~~ll~-~~~~~v~~~a~~~L~~l~~-~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~  408 (461)
                      .+..|+++|. +.++.+..-|+.=|+.+++ .|..+..+.+.|+-..+++++.+++++++..|+.++..+.
T Consensus        44 llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm  114 (119)
T PF11698_consen   44 LLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLM  114 (119)
T ss_dssp             HHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence            4778999994 4467778888899999999 9999999999999999999999999999999999988764

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]

Probab=96.24  E-value=0.33  Score=46.34  Aligned_cols=150  Identities=18%  Similarity=0.116  Sum_probs=113.3

Q ss_pred             CHHHHHHHhcCCChHHHHHHHHHHHHhhCChHHHHHHHhcCCHHHHHHHHcCCCH----HHHHHHHHHHHHhhcCchhHH
Q 044999          140 GLEIVIDLLNSCNDGTRRYLLEILSALALLREVRRVLICLGGLRYLVEAVSFGSM----VSRERACQAIGLLAVTGRARR  215 (461)
Q Consensus       140 ~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~----~~~~~a~~~L~~l~~~~~~~~  215 (461)
                      ....+++.+.+++...+..|+..+..++.+......++...++..|..++.+++.    ++...+++++..+-.+.-...
T Consensus        84 ~a~~i~e~l~~~~~~~~~~a~k~l~sls~d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvsW  163 (713)
T KOG2999|consen   84 YAKRIMEILTEGNNISKMEALKELDSLSLDPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVSW  163 (713)
T ss_pred             HHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceeee
Confidence            3556788888888888888999999999999999999999999999999988743    666777777777765554422


Q ss_pred             HHHhcCChHHHHHhcc--cCCHHHHHHHHHHHHHHhcCc-cchhhhhhcCCHHHHHHHhCCCChhHHHHHHHHHHHh
Q 044999          216 LLVELGVIPGLVELFH--IGDWTTKLVAGNTLGVVAAHV-EYITPVAEAGAIPLYAELLQGPDSTGKEISEDVFCIL  289 (461)
Q Consensus       216 ~~~~~~~i~~L~~ll~--~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l  289 (461)
                      ..+...++.....+..  ..+..+...|+..|.++.... ..+..+.+.--+..++..+...+..++..|...+-.+
T Consensus       164 ~~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n~~i~~~aial~nal  240 (713)
T KOG2999|consen  164 ESVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIALLNAL  240 (713)
T ss_pred             eecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence            2233334444444443  335567778888888888774 4666666777799999999999999988877777666

>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]

Probab=96.16  E-value=0.031  Score=52.07  Aligned_cols=289  Identities=13%  Similarity=0.044  Sum_probs=162.1

Q ss_pred             HHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHhcCCCCCHHHHHHHHHHHHHHhcc-----ChhhHHHHHHcCCHHHH
Q 044999           70 IQQAAAYCLKQIASQADGALATEIGQSGVINSVLRLFPQSDDSFRTVLVKCLRVFVTF-----GNENRVIVARNGGLEIV  144 (461)
Q Consensus        70 ~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~l~~~-----~~~~~~~~~~~g~i~~L  144 (461)
                      ++.++...|..++..  ... ...........+...+.+..++++..++.++..+-..     .++.-+.-..-|.+...
T Consensus       271 ~rle~~qvl~~~a~~--~~~-~~~~~~~l~RvI~~~~~~~~p~~~l~~a~ll~~lg~~lv~~~~P~~~k~~~q~~~fw~~  347 (728)
T KOG4535|consen  271 MRLEALQVLTLLARY--FSM-TQAYLMELGRVICKCMGEADPSIQLHGAKLLEELGTGLIQQYKPDSTKAPDQRAPFWTM  347 (728)
T ss_pred             hHHHHHHHHHHHHHH--HHH-HHHHHHHHHHHHHccCCCCChHHHHHHHHHHHHHHHHHhhhcCCCcccchhhhccHHHH
Confidence            334477777777762  221 1111222334455667788999999999888855431     11111111111111111


Q ss_pred             HH-------HhcCCChHHHHHHHHHHHHhhCCh-----H---HHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhc
Q 044999          145 ID-------LLNSCNDGTRRYLLEILSALALLR-----E---VRRVLICLGGLRYLVEAVSFGSMVSRERACQAIGLLAV  209 (461)
Q Consensus       145 ~~-------ll~~~~~~~~~~a~~~L~~l~~~~-----~---~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~  209 (461)
                      ..       ..++..+..+..+|..+.++...+     +   .....+..|+-       ++.+.-++..|.+++..+.-
T Consensus       348 ~l~~p~~~~~YDs~~~Tl~~s~Cdals~i~~~~f~~lpn~~~T~~~~Fl~GC~-------d~~~~lv~~aA~Ra~~VyVL  420 (728)
T KOG4535|consen  348 MLNGPLPRALYDSEHPTLQASACDALSSILPEAFSNLPNDRQTLCITFLLGCN-------DSKNRLVKAAASRALGVYVL  420 (728)
T ss_pred             HccCCChhhhhhhcCCCchhHHHHHHhhcCchhhcCCCCcchhhhHHHHhccc-------chHHHHHHHHHHhhceeEEe
Confidence            11       122334466777777777776211     1   11111112211       23344577788888888777


Q ss_pred             CchhH-HHHHhcCChHHHHHhcccCCHHHHHHHHHHHHHHhcC-----ccchhhhhhc-C-CHHHHHHHhC---CCChhH
Q 044999          210 TGRAR-RLLVELGVIPGLVELFHIGDWTTKLVAGNTLGVVAAH-----VEYITPVAEA-G-AIPLYAELLQ---GPDSTG  278 (461)
Q Consensus       210 ~~~~~-~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~-----~~~~~~~~~~-g-~i~~L~~ll~---~~~~~~  278 (461)
                      ++..+ ....-.++...+...+.+..-..++.++++++|++..     +..+..-.+. | .+..++..-.   .....+
T Consensus       421 Hp~lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~ll~~~~~~A~~~~Ad~dkV  500 (728)
T KOG4535|consen  421 HPCLRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSGLLLLKMLRSAIEASADKDKV  500 (728)
T ss_pred             ccchhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence            77663 3333345667777777777788999999999999864     2211111111 1 1222222221   225679


Q ss_pred             HHHHHHHHHHhccCcc------cHHHHHHHHHHHhc----cCCHHHHHHHHHHHHHhhCCCCchh--HHhhcCCHHHHHH
Q 044999          279 KEISEDVFCILAVSEA------NANAIAEHLVRILR----EGDNEANAAAADVLWDLAGYKHSVP--VIRNSGAIPILVN  346 (461)
Q Consensus       279 ~~~a~~~L~~l~~~~~------~~~~i~~~l~~ll~----~~~~~~~~~a~~~L~~l~~~~~~~~--~l~~~g~i~~L~~  346 (461)
                      +.++.++|.|+.+.-.      ++..+-....+++.    .....++-+++.+++||..++...-  .-......+.|..
T Consensus       501 ~~navraLgnllQvlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~F~~L~~  580 (728)
T KOG4535|consen  501 KSNAVRALGNLLQFLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPLQTAPWASQAFNALTS  580 (728)
T ss_pred             hhHHHHHHhhHHHHHHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCccccccCCCchHHHHHHHHH
Confidence            9999999999864332      12222233333332    3356799999999999998865421  1123345777888


Q ss_pred             hhcC-CCHHHHHHHHHHHHHhcC
Q 044999          347 LLRG-ENDEVREKVSGAIAQLSY  368 (461)
Q Consensus       347 ll~~-~~~~v~~~a~~~L~~l~~  368 (461)
                      ++.+ .+..+|.+|+.+|..-..
T Consensus       581 Lv~~~~NFKVRi~AA~aL~vp~~  603 (728)
T KOG4535|consen  581 LVTSCKNFKVRIRAAAALSVPGK  603 (728)
T ss_pred             HHHHhccceEeehhhhhhcCCCC
Confidence            8764 467788899888877666

>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1

Probab=96.12  E-value=0.073  Score=46.40  Aligned_cols=97  Identities=16%  Similarity=0.189  Sum_probs=81.7

Q ss_pred             HHHHHHHHHHHhh-CCCCchhHHhhcCCHHHHHHhhc-CCCHHHHHHHHHHHHHhcC-ChhhHHHHHhCCChHHHHHhcc
Q 044999          314 ANAAAADVLWDLA-GYKHSVPVIRNSGAIPILVNLLR-GENDEVREKVSGAIAQLSY-NEADRVALADAGAVPIMIELLH  390 (461)
Q Consensus       314 ~~~~a~~~L~~l~-~~~~~~~~l~~~g~i~~L~~ll~-~~~~~v~~~a~~~L~~l~~-~~~~~~~~~~~~~i~~L~~ll~  390 (461)
                      ....|+..|--++ -+|..+..+.+...++.+++++. ...+.++..++.+|..+.. ++.+...|-+.+|+..++.+++
T Consensus       107 li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~llk  186 (257)
T PF08045_consen  107 LIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLLK  186 (257)
T ss_pred             HHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHHc
Confidence            3456778888888 67899999999999999999995 4578899999988887777 9999999999999999999996


Q ss_pred             C--CCHHHHHHHHHHHHHhcCC
Q 044999          391 D--ESEELRDNAAESLINFSED  410 (461)
Q Consensus       391 ~--~~~~~~~~a~~~L~~l~~~  410 (461)
                      +  .+.+++..+.+.|.-...+
T Consensus       187 ~~~~~~~~r~K~~EFL~fyl~~  208 (257)
T PF08045_consen  187 SKSTDRELRLKCIEFLYFYLMP  208 (257)
T ss_pred             cccccHHHhHHHHHHHHHHHcc
Confidence            5  5788999998888766433

Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].

>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5

Probab=96.09  E-value=0.023  Score=38.85  Aligned_cols=66  Identities=14%  Similarity=0.038  Sum_probs=58.1

Q ss_pred             HHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhcc-CCCHHHHHHHHHHHHHhcCCCcchHHHHHhh
Q 044999          356 REKVSGAIAQLSYNEADRVALADAGAVPIMIELLH-DESEELRDNAAESLINFSEDPLQHERISEAI  421 (461)
Q Consensus       356 ~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~~  421 (461)
                      .+.+++++++++.++..-..+.+.+.++.++++.. ++...+|-.+..+|..++...++.+.|.+.|
T Consensus         4 lKaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~~G~~~L~~~g   70 (73)
T PF14668_consen    4 LKAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTEEGAEILDELG   70 (73)
T ss_pred             HHHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCHHHHHHHHHcC
Confidence            46789999999998887888888899999999994 6788999999999999999999998887654

>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain

Probab=96.04  E-value=0.24  Score=45.26  Aligned_cols=168  Identities=16%  Similarity=0.157  Sum_probs=109.2

Q ss_pred             HHHHH-hcCCCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHhh--CChHHHHH
Q 044999           99 INSVL-RLFPQSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLNSCNDGTRRYLLEILSALA--LLREVRRV  175 (461)
Q Consensus        99 l~~L~-~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~--~~~~~~~~  175 (461)
                      ++.|+ ..+++.++.+|..+..|+.-.+--+.+....     .++.+...++..++.++..|+.++..+.  .+.+.-..
T Consensus        28 l~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~~-----~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~  102 (298)
T PF12719_consen   28 LDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAKE-----HLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDS  102 (298)
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHHH-----HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccc
Confidence            34444 6788999999999999999666655322222     2566777777778899999999999987  22222222


Q ss_pred             HH-------hcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHH-hcc---cCCHHHHHHHHHH
Q 044999          176 LI-------CLGGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRARRLLVELGVIPGLVE-LFH---IGDWTTKLVAGNT  244 (461)
Q Consensus       176 ~~-------~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~-ll~---~~~~~~~~~a~~~  244 (461)
                      ..       ....+..+.+++.+.+++++..++..++.|-..+....   ...++..|+- ++.   .++...+..-...
T Consensus       103 ~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~---~~~vL~~Lll~yF~p~t~~~~~LrQ~L~~F  179 (298)
T PF12719_consen  103 ESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISD---PPKVLSRLLLLYFNPSTEDNQRLRQCLSVF  179 (298)
T ss_pred             hhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCc---HHHHHHHHHHHHcCcccCCcHHHHHHHHHH
Confidence            21       23477788889999999999999999999876665422   1122333333 332   2345566655556


Q ss_pred             HHHHhcCccchhhhhhcCCHHHHHHHhCCC
Q 044999          245 LGVVAAHVEYITPVAEAGAIPLYAELLQGP  274 (461)
Q Consensus       245 L~~l~~~~~~~~~~~~~g~i~~L~~ll~~~  274 (461)
                      +-..+......+......+++.+..+.+..
T Consensus       180 fp~y~~s~~~~Q~~l~~~f~~~l~~~~~~~  209 (298)
T PF12719_consen  180 FPVYASSSPENQERLAEAFLPTLRTLSNAP  209 (298)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHHHHhCc
Confidence            666666644334555566677777766544

>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]

Probab=96.01  E-value=0.51  Score=46.83  Aligned_cols=102  Identities=22%  Similarity=0.173  Sum_probs=70.2

Q ss_pred             HHHHHHhccCCHHHHHHHHHHHHHhhCCCCchhHHhhcCCHHHHHHh-hcCCCHHHHHHHHHHHHHhcC-ChhhHHHHHh
Q 044999          301 EHLVRILREGDNEANAAAADVLWDLAGYKHSVPVIRNSGAIPILVNL-LRGENDEVREKVSGAIAQLSY-NEADRVALAD  378 (461)
Q Consensus       301 ~~l~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~l-l~~~~~~v~~~a~~~L~~l~~-~~~~~~~~~~  378 (461)
                      +.+-+++.+.+|-.|...+..+..--....      +.+++..|+.. .++.+.+||+.|..+|+-++. +|+       
T Consensus       522 ~lI~el~~dkdpilR~~Gm~t~alAy~GTg------nnkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp~-------  588 (929)
T KOG2062|consen  522 PLIKELLRDKDPILRYGGMYTLALAYVGTG------NNKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPE-------  588 (929)
T ss_pred             HHHHHHhcCCchhhhhhhHHHHHHHHhccC------chhhHHHhhcccccccchHHHHHHHHHheeeEecChh-------
Confidence            344456666677777666554432221111      23456666666 567899999999999998888 776       


Q ss_pred             CCChHHHHHhc-cCCCHHHHHHHHHHHHHhcCCCcchHHH
Q 044999          379 AGAVPIMIELL-HDESEELRDNAAESLINFSEDPLQHERI  417 (461)
Q Consensus       379 ~~~i~~L~~ll-~~~~~~~~~~a~~~L~~l~~~~~~~~~l  417 (461)
                        .++..+++| .+.|+-+|..++.+|.-.|.....++.+
T Consensus       589 --~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~eAi  626 (929)
T KOG2062|consen  589 --QLPSTVSLLSESYNPHVRYGAAMALGIACAGTGLKEAI  626 (929)
T ss_pred             --hchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcHHHH
Confidence              366677777 5679999999999998887776665444

>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=95.92  E-value=1.6  Score=43.38  Aligned_cols=136  Identities=14%  Similarity=0.048  Sum_probs=91.4

Q ss_pred             HHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHhhCChHHHHHHHhcCCHHHHHHHHcCC
Q 044999          113 FRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLNSCNDGTRRYLLEILSALALLREVRRVLICLGGLRYLVEAVSFG  192 (461)
Q Consensus       113 ~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~~l~~~  192 (461)
                      +...++..+..+-..+.+.-   .-.|.+..+++..++.+..+|...+..|..+..........+-.+....+..-+.+.
T Consensus        62 Il~fla~fv~sl~q~d~e~D---lV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Dr  138 (892)
T KOG2025|consen   62 ILSFLARFVESLPQLDKEED---LVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDR  138 (892)
T ss_pred             HHHHHHHHHHhhhccCchhh---HHHHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhcc
Confidence            34445555555443332222   234456677777788899999999999999986554455555556677777777788


Q ss_pred             CHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhcc-cCCHHHHHHHHHHHHHHhcCccchhhh
Q 044999          193 SMVSRERACQAIGLLAVTGRARRLLVELGVIPGLVELFH-IGDWTTKLVAGNTLGVVAAHVEYITPV  258 (461)
Q Consensus       193 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~~~~~~~  258 (461)
                      .+.+|.+|..+|..+-..+.+.    +..+...+..+++ ++++++|+.   +|.|++.++.....+
T Consensus       139 ep~VRiqAv~aLsrlQ~d~~de----e~~v~n~l~~liqnDpS~EVRRa---aLsnI~vdnsTlp~I  198 (892)
T KOG2025|consen  139 EPNVRIQAVLALSRLQGDPKDE----ECPVVNLLKDLIQNDPSDEVRRA---ALSNISVDNSTLPCI  198 (892)
T ss_pred             CchHHHHHHHHHHHHhcCCCCC----cccHHHHHHHHHhcCCcHHHHHH---HHHhhccCcccchhH
Confidence            8899999999999997544331    1235677778887 678899988   556666554444333

>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]

Probab=95.92  E-value=2.4  Score=43.40  Aligned_cols=217  Identities=14%  Similarity=0.067  Sum_probs=139.2

Q ss_pred             CCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhc-CCChHHHHHHHHHHHHhhCChHHHHHHHhcCCHHHH
Q 044999          107 PQSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLN-SCNDGTRRYLLEILSALALLREVRRVLICLGGLRYL  185 (461)
Q Consensus       107 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l  185 (461)
                      .+..|.....+...+...+.....+...+..  .+...+..+. +..+.++..|+++++..+.......  ...+++..+
T Consensus       460 ~~e~P~Ll~Ra~~~i~~fs~~~~~~~~~~~~--fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~~~vl~~--~~p~ild~L  535 (1005)
T KOG2274|consen  460 YQESPFLLLRAFLTISKFSSSTVINPQLLQH--FLNATVNALTMDVPPPVKISAVRAFCGYCKVKVLLS--LQPMILDGL  535 (1005)
T ss_pred             cccCHHHHHHHHHHHHHHHhhhccchhHHHH--HHHHHHHhhccCCCCchhHHHHHHHHhccCceeccc--cchHHHHHH
Confidence            3445554445666666555433222222211  1233333333 3445788888888888872211111  123466777


Q ss_pred             HHHHcCCCHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhcc--cCCHHHHHHHHHHHHHHhcCccchhhhhhcCC
Q 044999          186 VEAVSFGSMVSRERACQAIGLLAVTGRARRLLVELGVIPGLVELFH--IGDWTTKLVAGNTLGVVAAHVEYITPVAEAGA  263 (461)
Q Consensus       186 ~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~--~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~  263 (461)
                      ..+....+.++......+|+..+..++......++.+.|.++.++.  +++|.+...+-.++..++....+...+. ...
T Consensus       536 ~qlas~~s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~~~~g~m~-e~~  614 (1005)
T KOG2274|consen  536 LQLASKSSDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIAANYGPMQ-ERL  614 (1005)
T ss_pred             HHHcccccHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhcchH-HHH
Confidence            7777777889999999999999988888777777778888888765  6677777777777777766433333222 234


Q ss_pred             HHHHHHHhCCCC----hhHHHHHHHHHHHhccCcc--cHHHHH----HHHHHHh-ccCCHHHHHHHHHHHHHhhCC
Q 044999          264 IPLYAELLQGPD----STGKEISEDVFCILAVSEA--NANAIA----EHLVRIL-REGDNEANAAAADVLWDLAGY  328 (461)
Q Consensus       264 i~~L~~ll~~~~----~~~~~~a~~~L~~l~~~~~--~~~~i~----~~l~~ll-~~~~~~~~~~a~~~L~~l~~~  328 (461)
                      +|.+++.+..+.    +.....++..|..+..+.+  -...+.    |++.++. .+++.++...+..||+.+...
T Consensus       615 iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~  690 (1005)
T KOG2274|consen  615 IPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVAKITLHSDDHETLQNATECLRALISV  690 (1005)
T ss_pred             HHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhHhheeecCChHHHHhHHHHHHHHHhc
Confidence            899999998775    6677777777776643322  222222    8888875 667888999999999988754

>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]

Probab=95.90  E-value=1.2  Score=41.98  Aligned_cols=221  Identities=17%  Similarity=0.165  Sum_probs=130.8

Q ss_pred             HHhcCCCCCHHHHHHHHHHHHHHhccC---hhhHHHHHHcCCHHHHHHHhcCCC-------hHHHHHHHHHHHHhhCChH
Q 044999          102 VLRLFPQSDDSFRTVLVKCLRVFVTFG---NENRVIVARNGGLEIVIDLLNSCN-------DGTRRYLLEILSALALLRE  171 (461)
Q Consensus       102 L~~ll~~~~~~~~~~~~~~l~~l~~~~---~~~~~~~~~~g~i~~L~~ll~~~~-------~~~~~~a~~~L~~l~~~~~  171 (461)
                      +..+++..+.+-+-.+...+..++..+   ..+++.+.+.=|++.+-+++.+.+       .-.+..++.+|..+|..++
T Consensus        16 ~~~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~pE   95 (698)
T KOG2611|consen   16 CLKLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRVPE   95 (698)
T ss_pred             HHHHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCChh
Confidence            455556555553544554445777633   245677788878888888886542       2456778889999998776


Q ss_pred             H--HHHHHhcCCHHHHHHHHcCC-CH------HHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhcccCC-HHHHHHH
Q 044999          172 V--RRVLICLGGLRYLVEAVSFG-SM------VSRERACQAIGLLAVTGRARRLLVELGVIPGLVELFHIGD-WTTKLVA  241 (461)
Q Consensus       172 ~--~~~~~~~~~l~~l~~~l~~~-~~------~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~-~~~~~~a  241 (461)
                      .  .+.+++.  +|.+.+++... ++      .+...+..+|..++........+...|+++.+.++-.-++ ...+..+
T Consensus        96 lAsh~~~v~~--IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G~~~Lia~G~~~~~~Q~y~~~~~~~d~ala  173 (698)
T KOG2611|consen   96 LASHEEMVSR--IPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAGLMTLIASGGLRVIAQMYELPDGSHDMALA  173 (698)
T ss_pred             hccCHHHHHh--hhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCchhHHHHhcCchHHHHHHHhCCCCchhHHHH
Confidence            5  3455544  88888888654 22      2677889999999999888888899999999997665332 2333444


Q ss_pred             HHHHHHHhcC----ccchhhhhhcCCHHHHHHHhCCCChhHHHHHHHHHHHhccC-------cccH-----HHHHHHHHH
Q 044999          242 GNTLGVVAAH----VEYITPVAEAGAIPLYAELLQGPDSTGKEISEDVFCILAVS-------EANA-----NAIAEHLVR  305 (461)
Q Consensus       242 ~~~L~~l~~~----~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~-------~~~~-----~~i~~~l~~  305 (461)
                      +.++.-+...    ++....+..  .+..+..=+...+...+...+..|..+-..       ++-+     ..+...+..
T Consensus       174 l~Vlll~~~~~~cw~e~~~~fla--li~~va~df~~~~~a~KfElc~lL~~vl~~~~~e~~~~pl~~~~w~~~l~~G~~~  251 (698)
T KOG2611|consen  174 LKVLLLLVSKLDCWSETIERFLA--LIAAVARDFAVLHNALKFELCHLLSAVLSSEYSELLHEPLRSMNWADYLRTGVVA  251 (698)
T ss_pred             HHHHHHHHHhcccCcCCHHHHHH--HHHHHHHHHHHhhhHHHHHHHHHHHHHHhCChHHhccChhhhcchHHHHHHHHHH
Confidence            4444333322    222222211  122232223333455566666666543111       1112     112266777


Q ss_pred             HhccC-CHHHHHHHHHHHHHhh
Q 044999          306 ILREG-DNEANAAAADVLWDLA  326 (461)
Q Consensus       306 ll~~~-~~~~~~~a~~~L~~l~  326 (461)
                      +|.+. .|.-|..|+....++.
T Consensus       252 IL~~kv~p~qr~pAL~Laa~~~  273 (698)
T KOG2611|consen  252 ILQNKVAPSQRLPALILAANMM  273 (698)
T ss_pred             HHhcccCchhcChHHHHHHHHH
Confidence            77665 5666666666666554

>KOG4653 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.88  E-value=0.91  Score=45.96  Aligned_cols=223  Identities=12%  Similarity=0.034  Sum_probs=138.1

Q ss_pred             HHHhHHHHHHHhhcCCHHHHHHHHHHHHhhc-CCCchh-HHHh-hHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHhc
Q 044999            8 WEEAFNRFEQAVVSGSEALQVKALTKLARVS-KFAPQD-ILAA-TIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQ   84 (461)
Q Consensus         8 ~~~~~~~l~~ll~~~~~~~~~~a~~~l~~la-~~~~~~-~l~~-~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~   84 (461)
                      ..+-+..-+..+.++...+|-.|...+.++. +-.... ...+ ++...++.|+.      +|+-+-..|...+..||+-
T Consensus       725 ~~e~~qeai~sl~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~Lkd------edsyvyLnaI~gv~~Lcev  798 (982)
T KOG4653|consen  725 DIEPLQEAISSLHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKD------EDSYVYLNAIRGVVSLCEV  798 (982)
T ss_pred             cHHHHHHHHHHhcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcc------cCceeeHHHHHHHHHHHHh
Confidence            3444555566666777899999999999999 333333 2333 99999999986      4455666688888888862


Q ss_pred             CCchhHHHHHhcCCHHHHHh-cCCC---CCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhcCCChHHHHHHH
Q 044999           85 ADGALATEIGQSGVINSVLR-LFPQ---SDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLNSCNDGTRRYLL  160 (461)
Q Consensus        85 ~~~~~~~~~~~~~~l~~L~~-ll~~---~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~  160 (461)
                               .....++.+.. ..+.   ..++.+.....++.++...-.+....... -.+..++...++++...|..++
T Consensus       799 ---------y~e~il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~-~Li~tfl~gvrepd~~~RaSS~  868 (982)
T KOG4653|consen  799 ---------YPEDILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKA-VLINTFLSGVREPDHEFRASSL  868 (982)
T ss_pred             ---------cchhhHHHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHH-HHHHHHHHhcCCchHHHHHhHH
Confidence                     23345666665 3332   22455666677777766533233222222 4566777777877778899999


Q ss_pred             HHHHHhhCChHH--HHHHHhcCCHHHHHHHHcCC-CHHHHHHHHHHHHHhhcCchh-HHHHH---hcCChHHHHHhccc-
Q 044999          161 EILSALALLREV--RRVLICLGGLRYLVEAVSFG-SMVSRERACQAIGLLAVTGRA-RRLLV---ELGVIPGLVELFHI-  232 (461)
Q Consensus       161 ~~L~~l~~~~~~--~~~~~~~~~l~~l~~~l~~~-~~~~~~~a~~~L~~l~~~~~~-~~~~~---~~~~i~~L~~ll~~-  232 (461)
                      ..++++|.-...  ...+.+  ++..++.+...+ +.-+|+.|...+..+-.+... .-.+.   ..+....+....+. 
T Consensus       869 a~lg~Lcq~~a~~vsd~~~e--v~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~  946 (982)
T KOG4653|consen  869 ANLGQLCQLLAFQVSDFFHE--VLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQH  946 (982)
T ss_pred             HHHHHHHHHHhhhhhHHHHH--HHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcC
Confidence            999999832221  222222  355556665544 678999999999888665543 11111   12344455555553 


Q ss_pred             CCHHHHHHHHHHHHHH
Q 044999          233 GDWTTKLVAGNTLGVV  248 (461)
Q Consensus       233 ~~~~~~~~a~~~L~~l  248 (461)
                      ++..++.+++.++..+
T Consensus       947 ~dd~~klhaql~leei  962 (982)
T KOG4653|consen  947 DDDGLKLHAQLCLEEI  962 (982)
T ss_pred             chhHHHHHHHHHHHHH
Confidence            3445666776666554

>KOG4653 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.81  E-value=0.35  Score=48.74  Aligned_cols=217  Identities=12%  Similarity=0.094  Sum_probs=137.3

Q ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhcccCCHHHHHHHHHHHHHHhcCccchhhhhhc
Q 044999          182 LRYLVEAVSFGSMVSRERACQAIGLLAVTGRARRLLVELGVIPGLVELFHIGDWTTKLVAGNTLGVVAAHVEYITPVAEA  261 (461)
Q Consensus       182 l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~  261 (461)
                      ....+..+.++-+.++..++..+..+....+....+...+++...++.+++.++.+--.|...+..||.-       ...
T Consensus       729 ~qeai~sl~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcev-------y~e  801 (982)
T KOG4653|consen  729 LQEAISSLHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEV-------YPE  801 (982)
T ss_pred             HHHHHHHhcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHh-------cch
Confidence            4444555566666889999999999999887677788889999999999999999998988888888763       334


Q ss_pred             CCHHHHHHHhCCC----ChhHHHHHHHHHHHhcc--Cccc---HHHHHHHHHHHhccCCHHHHHHHHHHHHHhhCCC--C
Q 044999          262 GAIPLYAELLQGP----DSTGKEISEDVFCILAV--SEAN---ANAIAEHLVRILREGDNEANAAAADVLWDLAGYK--H  330 (461)
Q Consensus       262 g~i~~L~~ll~~~----~~~~~~~a~~~L~~l~~--~~~~---~~~i~~~l~~ll~~~~~~~~~~a~~~L~~l~~~~--~  330 (461)
                      .++|.+.+.-.+.    .++.+-..-.++.++..  ++-.   +..+...++...++++.+-|..++..++++|.-.  .
T Consensus       802 ~il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~  881 (982)
T KOG4653|consen  802 DILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKAVLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQ  881 (982)
T ss_pred             hhHHHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhh
Confidence            4577777743222    13444444466666532  2222   2233366677777777788999999999998532  2


Q ss_pred             chhHHhhcCCHHHHHHhhc-CCCHHHHHHHHHHHHHhcCChhhH-HHH---HhCCChHHHHHhccC-CCHHHHHHHHHHH
Q 044999          331 SVPVIRNSGAIPILVNLLR-GENDEVREKVSGAIAQLSYNEADR-VAL---ADAGAVPIMIELLHD-ESEELRDNAAESL  404 (461)
Q Consensus       331 ~~~~l~~~g~i~~L~~ll~-~~~~~v~~~a~~~L~~l~~~~~~~-~~~---~~~~~i~~L~~ll~~-~~~~~~~~a~~~L  404 (461)
                      ..+.+.+  .+..++.+.+ ++++.+|+.|+..+..+-.+.+.. -.+   ...+....+..+.+. .++.++..++.++
T Consensus       882 vsd~~~e--v~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql~l  959 (982)
T KOG4653|consen  882 VSDFFHE--VLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQLCL  959 (982)
T ss_pred             hhHHHHH--HHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHH
Confidence            2222322  4445555554 557789999999888887733311 011   111223444444433 3444555555555


Q ss_pred             HHh
Q 044999          405 INF  407 (461)
Q Consensus       405 ~~l  407 (461)
                      -.+
T Consensus       960 eei  962 (982)
T KOG4653|consen  960 EEI  962 (982)
T ss_pred             HHH
Confidence            433

>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]

Probab=95.79  E-value=0.19  Score=50.91  Aligned_cols=143  Identities=17%  Similarity=0.152  Sum_probs=101.9

Q ss_pred             cCChHHHHHhcccCCHHHHHHHHHHHHHHhcCccchhhhhh--cCCHHHHHHHhCCCChhHHHHHHHHHHHhc-cCccc-
Q 044999          220 LGVIPGLVELFHIGDWTTKLVAGNTLGVVAAHVEYITPVAE--AGAIPLYAELLQGPDSTGKEISEDVFCILA-VSEAN-  295 (461)
Q Consensus       220 ~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~--~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~-~~~~~-  295 (461)
                      ...+|.+++.+...+...+..-..+|.++-.+-+. +.+..  ....|.|++.+.-+|..+|..+..++.-+. ..+.- 
T Consensus       866 ~~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~-~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~  944 (1030)
T KOG1967|consen  866 CDIVPILVSKFETAPGSQKHNYLEALSHVLTNVPK-QVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQ  944 (1030)
T ss_pred             HhhHHHHHHHhccCCccchhHHHHHHHHHHhcCCH-HhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccc
Confidence            34788888888866666677777778777665222 22222  256788899999999999999998887763 22222 


Q ss_pred             ---HHHHHHHHHHHhccCC---HHHHHHHHHHHHHhhC-CCCchhHHhhcCCHHHHHHhhcCCCHHHHHHHHHHH
Q 044999          296 ---ANAIAEHLVRILREGD---NEANAAAADVLWDLAG-YKHSVPVIRNSGAIPILVNLLRGENDEVREKVSGAI  363 (461)
Q Consensus       296 ---~~~i~~~l~~ll~~~~---~~~~~~a~~~L~~l~~-~~~~~~~l~~~g~i~~L~~ll~~~~~~v~~~a~~~L  363 (461)
                         -..++|.++.+=++.+   ..+|..|+.+|..|.+ -|...-...+..++..|...|.++.--+|..|..+=
T Consensus       945 t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~tR 1019 (1030)
T KOG1967|consen  945 TEHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDTR 1019 (1030)
T ss_pred             hHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHHh
Confidence               2333366666655554   5789999999999997 566555556677888899999998888898887653

>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]

Probab=95.68  E-value=3.3  Score=43.26  Aligned_cols=217  Identities=17%  Similarity=0.096  Sum_probs=129.0

Q ss_pred             CCHHHHHHHhcCCChHHHHHHHHHHHHhhCChHHHHHHHhcCCHHHHHHHHcCCC-HHHHHHHHHHHHHhhcCchh-HHH
Q 044999          139 GGLEIVIDLLNSCNDGTRRYLLEILSALALLREVRRVLICLGGLRYLVEAVSFGS-MVSRERACQAIGLLAVTGRA-RRL  216 (461)
Q Consensus       139 g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~-~~~~~~a~~~L~~l~~~~~~-~~~  216 (461)
                      ++++.|+..+++.+..+|..|++.+..++..-+  ..+.+ .++...++++...+ +..--.++-+|+.++...-. -..
T Consensus       341 ~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp--~~Lad-~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlps~  417 (1133)
T KOG1943|consen  341 FVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLP--PELAD-QVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLPSL  417 (1133)
T ss_pred             HHHHHHHHhccCCcchhhHHHHHHHHHHHccCc--HHHHH-HHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcchHH
Confidence            467778888889999999999999999994332  22222 24555566554332 33334788888888776543 222


Q ss_pred             HHhcCChHHHHHhcc--------cCCHHHHHHHHHHHHHHhcC--ccchhhhhhcCCHHHHHHHhCCCChhHHHHHHHHH
Q 044999          217 LVELGVIPGLVELFH--------IGDWTTKLVAGNTLGVVAAH--VEYITPVAEAGAIPLYAELLQGPDSTGKEISEDVF  286 (461)
Q Consensus       217 ~~~~~~i~~L~~ll~--------~~~~~~~~~a~~~L~~l~~~--~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L  286 (461)
                      +.  .+++.++.-+.        +....+|..|+.+++.++..  +..-..+...=.-..++..+-+.+-..|+.|..++
T Consensus       418 l~--dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAsAAl  495 (1133)
T KOG1943|consen  418 LE--DVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAASAAL  495 (1133)
T ss_pred             HH--HHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHHHHH
Confidence            22  25666666554        23456899999999999876  22222222111122233334455667788888877


Q ss_pred             HHhccC----cccHHH----------------------HH------HHHHH-Hhcc----CCHHHHHHHHHHHHHhhCC-
Q 044999          287 CILAVS----EANANA----------------------IA------EHLVR-ILRE----GDNEANAAAADVLWDLAGY-  328 (461)
Q Consensus       287 ~~l~~~----~~~~~~----------------------i~------~~l~~-ll~~----~~~~~~~~a~~~L~~l~~~-  328 (461)
                      ......    |.....                      +.      ..+++ ++..    =++.+++.++.+|.+|+.. 
T Consensus       496 qE~VGR~~n~p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~L~t~Kv~HWd~~irelaa~aL~~Ls~~~  575 (1133)
T KOG1943|consen  496 QENVGRQGNFPHGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNHLLTKKVCHWDVKIRELAAYALHKLSLTE  575 (1133)
T ss_pred             HHHhccCCCCCCchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhh
Confidence            655321    111110                      00      33333 3333    3788999999999999843 


Q ss_pred             CCchhHHhhcCCHHHHHHhhcCCCHHHHHHHHHHHH
Q 044999          329 KHSVPVIRNSGAIPILVNLLRGENDEVREKVSGAIA  364 (461)
Q Consensus       329 ~~~~~~l~~~g~i~~L~~ll~~~~~~v~~~a~~~L~  364 (461)
                      ++.    ...+.++.++....+++...+.....+.+
T Consensus       576 pk~----~a~~~L~~lld~~ls~~~~~r~g~~la~~  607 (1133)
T KOG1943|consen  576 PKY----LADYVLPPLLDSTLSKDASMRHGVFLAAG  607 (1133)
T ss_pred             HHh----hcccchhhhhhhhcCCChHHhhhhHHHHH
Confidence            332    34567788888877777776654443333

>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=95.67  E-value=0.1  Score=54.13  Aligned_cols=140  Identities=19%  Similarity=0.172  Sum_probs=109.5

Q ss_pred             CHHHHHHHhCC----CChhHHHHHHHHHHHhc-cCcccHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHhhC-CCCchhHH
Q 044999          263 AIPLYAELLQG----PDSTGKEISEDVFCILA-VSEANANAIAEHLVRILR-EGDNEANAAAADVLWDLAG-YKHSVPVI  335 (461)
Q Consensus       263 ~i~~L~~ll~~----~~~~~~~~a~~~L~~l~-~~~~~~~~i~~~l~~ll~-~~~~~~~~~a~~~L~~l~~-~~~~~~~l  335 (461)
                      +.|.+++..+.    .+|+++..|.-+|+.+. ...+.+..-.+.++..+. +++|.+|.+++-+++.++. .|...+. 
T Consensus       920 f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~fces~l~llftimeksp~p~IRsN~VvalgDlav~fpnlie~-  998 (1251)
T KOG0414|consen  920 FAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEFCESHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFPNLIEP-  998 (1251)
T ss_pred             HHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCceeeecchheccchhhhcccccch-
Confidence            45566666643    37899999999999984 455556666699999985 8899999999999999994 4444333 


Q ss_pred             hhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhccCCCHHHHHHHHHHHHHhcCCC
Q 044999          336 RNSGAIPILVNLLRGENDEVREKVSGAIAQLSYNEADRVALADAGAVPIMIELLHDESEELRDNAAESLINFSEDP  411 (461)
Q Consensus       336 ~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~  411 (461)
                          ..+.|.+.|++.++.+|+.|..+|.+|..+.    .+.-.|.++.+..++.+++++++.-|-.....|+...
T Consensus       999 ----~T~~Ly~rL~D~~~~vRkta~lvlshLILnd----miKVKGql~eMA~cl~D~~~~IsdlAk~FF~Els~k~ 1066 (1251)
T KOG0414|consen  999 ----WTEHLYRRLRDESPSVRKTALLVLSHLILND----MIKVKGQLSEMALCLEDPNAEISDLAKSFFKELSSKG 1066 (1251)
T ss_pred             ----hhHHHHHHhcCccHHHHHHHHHHHHHHHHhh----hhHhcccHHHHHHHhcCCcHHHHHHHHHHHHHhhhcc
Confidence                3456889999999999999999999998633    3344577999999999999999999997777776544

>KOG2956 consensus CLIP-associating protein [General function prediction only]

Probab=95.59  E-value=0.87  Score=42.81  Aligned_cols=172  Identities=12%  Similarity=0.002  Sum_probs=96.7

Q ss_pred             HHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhcC-CChHHHHHHHHHHHHhhCChHHHHHHHhcCCHHHHHHHH
Q 044999          111 DSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLNS-CNDGTRRYLLEILSALALLREVRRVLICLGGLRYLVEAV  189 (461)
Q Consensus       111 ~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~~l  189 (461)
                      .+-+..+...+..+...+....=.-.-..++..+++.|+. .++..+..|+++|..++.+...+-.=-..-.+..+++.-
T Consensus       301 a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Leaa  380 (516)
T KOG2956|consen  301 ASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVLEAA  380 (516)
T ss_pred             hhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHHHH
Confidence            3335556655665554442221111112245567777877 778899999999999996544432111112455555555


Q ss_pred             cCCCHHH-HHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhcccCCHHHHHHHHHHHHHHhcC-ccchhhhhhcCCHHHH
Q 044999          190 SFGSMVS-RERACQAIGLLAVTGRARRLLVELGVIPGLVELFHIGDWTTKLVAGNTLGVVAAH-VEYITPVAEAGAIPLY  267 (461)
Q Consensus       190 ~~~~~~~-~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~g~i~~L  267 (461)
                      .+...++ +..+=.++..++.+.+.+.       +..+..++...+...-..++..+..+... ....-..+-..+.|.+
T Consensus       381 ~ds~~~v~~~Aeed~~~~las~~P~~~-------I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll~diaP~~  453 (516)
T KOG2956|consen  381 KDSQDEVMRVAEEDCLTTLASHLPLQC-------IVNISPLILTADEPRAVAVIKMLTKLFERLSAEELLNLLPDIAPCV  453 (516)
T ss_pred             hCCchhHHHHHHHHHHHHHHhhCchhH-------HHHHhhHHhcCcchHHHHHHHHHHHHHhhcCHHHHHHhhhhhhhHH
Confidence            5555544 4444455666666666532       33344444445555555555566666554 1111111223667888


Q ss_pred             HHHhCCCChhHHHHHHHHHHHh
Q 044999          268 AELLQGPDSTGKEISEDVFCIL  289 (461)
Q Consensus       268 ~~ll~~~~~~~~~~a~~~L~~l  289 (461)
                      ++-..+.+..+|+.+..+|..+
T Consensus       454 iqay~S~SS~VRKtaVfCLVam  475 (516)
T KOG2956|consen  454 IQAYDSTSSTVRKTAVFCLVAM  475 (516)
T ss_pred             HHHhcCchHHhhhhHHHhHHHH
Confidence            8888888888888887777655

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []

Probab=95.55  E-value=0.026  Score=31.38  Aligned_cols=29  Identities=24%  Similarity=0.281  Sum_probs=25.4

Q ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHhhcC
Q 044999          182 LRYLVEAVSFGSMVSRERACQAIGLLAVT  210 (461)
Q Consensus       182 l~~l~~~l~~~~~~~~~~a~~~L~~l~~~  210 (461)
                      +|.+++.++++++++|..|+.+|+.++..
T Consensus         2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~~   30 (31)
T PF02985_consen    2 LPILLQLLNDPSPEVRQAAAECLGAIAEH   30 (31)
T ss_dssp             HHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence            68899999999999999999999998753

Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....

>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing

Probab=95.48  E-value=1.5  Score=41.35  Aligned_cols=96  Identities=15%  Similarity=0.172  Sum_probs=75.7

Q ss_pred             CCHHHHHhcCCCC---CHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhc-CC---ChHHHHHHHHHHHHhhCC
Q 044999           97 GVINSVLRLFPQS---DDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLN-SC---NDGTRRYLLEILSALALL  169 (461)
Q Consensus        97 ~~l~~L~~ll~~~---~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll~-~~---~~~~~~~a~~~L~~l~~~  169 (461)
                      ..+..|...+++.   .+.+-..++..+..+...+|..-..+.+.|.++.+++.+. ..   ..++...--.++..+|.+
T Consensus       106 ~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~l~AicLN  185 (379)
T PF06025_consen  106 SLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITAKGILPSSEVLTSLPNVLSAICLN  185 (379)
T ss_pred             hHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhccCCCCcHHHHHHHHHHHhHHhcC
Confidence            3445555555543   4667778888888888888888999999999999999887 33   335555666888999999


Q ss_pred             hHHHHHHHhcCCHHHHHHHHcCC
Q 044999          170 REVRRVLICLGGLRYLVEAVSFG  192 (461)
Q Consensus       170 ~~~~~~~~~~~~l~~l~~~l~~~  192 (461)
                      ....+.+.+.+.++.+++++.+.
T Consensus       186 ~~Gl~~~~~~~~l~~~f~if~s~  208 (379)
T PF06025_consen  186 NRGLEKVKSSNPLDKLFEIFTSP  208 (379)
T ss_pred             HHHHHHHHhcChHHHHHHHhCCH
Confidence            99999999999999999988765

This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []

Probab=95.37  E-value=0.033  Score=30.93  Aligned_cols=27  Identities=15%  Similarity=0.094  Sum_probs=24.4

Q ss_pred             HHHHHHHhhcCCHHHHHHHHHHHHhhc
Q 044999           12 FNRFEQAVVSGSEALQVKALTKLARVS   38 (461)
Q Consensus        12 ~~~l~~ll~~~~~~~~~~a~~~l~~la   38 (461)
                      +|.+.++++++++.||..|+.+|+.++
T Consensus         2 lp~l~~~l~D~~~~VR~~a~~~l~~i~   28 (31)
T PF02985_consen    2 LPILLQLLNDPSPEVRQAAAECLGAIA   28 (31)
T ss_dssp             HHHHHHHHT-SSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence            688999999999999999999999886

Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....

>KOG1566 consensus Conserved protein Mo25 [Function unknown]

Probab=95.32  E-value=2  Score=38.36  Aligned_cols=213  Identities=17%  Similarity=0.156  Sum_probs=148.7

Q ss_pred             HHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCchh-----HHHHHh-cCChHHHHHhcccCCHHHHHHHHHHHHH
Q 044999          174 RVLICLGGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRA-----RRLLVE-LGVIPGLVELFHIGDWTTKLVAGNTLGV  247 (461)
Q Consensus       174 ~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~-----~~~~~~-~~~i~~L~~ll~~~~~~~~~~a~~~L~~  247 (461)
                      ..+.++|.+..++..+...+-+.+..++.+..++-...-.     ...+.. ...+..|+.--.. .+++-..+-..+..
T Consensus        73 qef~~~~~l~~lI~~l~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~~~~-~~~iaL~cg~mlrE  151 (342)
T KOG1566|consen   73 QEFYNADVLSLLIQHLPKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLETNPEILDNLVKGYEN-TPEIALTCGNMLRE  151 (342)
T ss_pred             HHHHhCCchHHHHHhhhcccchhhhHHHHHHHHHHHhhcCCcchHHHHHHhCHHHHHHHHhhhcc-chHHHHHHHHHHHH
Confidence            4678889999999999888888888888888887654332     222222 2334444443112 46666666677777


Q ss_pred             HhcCccchhhhhhcCCHHHHHHHhCCCChhHHHHHHHHHHHh-ccCcccHHHHH---------HHHHHHhccCCHHHHHH
Q 044999          248 VAAHVEYITPVAEAGAIPLYAELLQGPDSTGKEISEDVFCIL-AVSEANANAIA---------EHLVRILREGDNEANAA  317 (461)
Q Consensus       248 l~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l-~~~~~~~~~i~---------~~l~~ll~~~~~~~~~~  317 (461)
                      ...++...+.+..+.-.......+..+.-++..-|..+...+ ..+.....++.         +..-.++++++--++..
T Consensus       152 cirhe~LakiiL~s~~~~~FF~~vq~p~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~Nyvtkrq  231 (342)
T KOG1566|consen  152 CIRHEFLAKIILESTNFEKFFLYVQLPNFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRSENYVTKRQ  231 (342)
T ss_pred             HHhhHHHHHHHHcchhHHHHHHHHhccchHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhcccceehHHH
Confidence            777777777777777788888888888888888888888877 44444444433         44566788999999999


Q ss_pred             HHHHHHHhhCCCCchhHHh----hcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCChh----hHHHHHhCCChHHHHHhc
Q 044999          318 AADVLWDLAGYKHSVPVIR----NSGAIPILVNLLRGENDEVREKVSGAIAQLSYNEA----DRVALADAGAVPIMIELL  389 (461)
Q Consensus       318 a~~~L~~l~~~~~~~~~l~----~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~----~~~~~~~~~~i~~L~~ll  389 (461)
                      +...++.+-.+..|...+.    +..-+..++.+|++++..+|-.|-....-...+|.    .+..+.+..  +.|++++
T Consensus       232 s~kllg~llldr~N~~~M~kYiss~enLKlmM~llrdkskniQ~eAFhvFKvfvAnpnK~q~V~~IL~~Nr--~KLl~~l  309 (342)
T KOG1566|consen  232 SLKLLGELLLDRSNSAVMTKYISSPENLKLMMNLLRDKSKNIQLEAFHVFKVFVANPNKPQPVRDILVRNR--PKLLELL  309 (342)
T ss_pred             HHHhHHHHHhCCCcHHHHHHHhcCHHHHHHHHHHhhCccccchHHHHHHHHHHhcCCCCCchHHHHHHhCc--HHHHHHH
Confidence            9999999987766654444    44678899999999999999999888777766443    333333433  4455544

>KOG2956 consensus CLIP-associating protein [General function prediction only]

Probab=95.28  E-value=1.5  Score=41.35  Aligned_cols=166  Identities=14%  Similarity=0.027  Sum_probs=104.5

Q ss_pred             HHHHHHHHHHHHhh-CChHHHHHHHhcCCHHHHHHHHcC-CCHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhcc
Q 044999          154 GTRRYLLEILSALA-LLREVRRVLICLGGLRYLVEAVSF-GSMVSRERACQAIGLLAVTGRARRLLVELGVIPGLVELFH  231 (461)
Q Consensus       154 ~~~~~a~~~L~~l~-~~~~~~~~~~~~~~l~~l~~~l~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~  231 (461)
                      +-+..|+.-|..+. .+....+.=.-..++..+++.|.+ .++..+..|++.|..++.+.+.+-.=...-++..+++.-.
T Consensus       302 ~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Leaa~  381 (516)
T KOG2956|consen  302 SERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVLEAAK  381 (516)
T ss_pred             hHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHHHHh
Confidence            45566666454444 554443332223356778888987 5888999999999999887765322111235666777767


Q ss_pred             cCCHHHHHHHHH-HHHHHhcCccchhhhhhcCCHHHHHHHhCCCChhHHHHHHHHHHHhccCcccHHH--H----HHHHH
Q 044999          232 IGDWTTKLVAGN-TLGVVAAHVEYITPVAEAGAIPLYAELLQGPDSTGKEISEDVFCILAVSEANANA--I----AEHLV  304 (461)
Q Consensus       232 ~~~~~~~~~a~~-~L~~l~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~--i----~~~l~  304 (461)
                      +.++++...|.. ++.-++.+.+.+.       +..+..++...+...-..++..+..+...-.....  +    .|.++
T Consensus       382 ds~~~v~~~Aeed~~~~las~~P~~~-------I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll~diaP~~i  454 (516)
T KOG2956|consen  382 DSQDEVMRVAEEDCLTTLASHLPLQC-------IVNISPLILTADEPRAVAVIKMLTKLFERLSAEELLNLLPDIAPCVI  454 (516)
T ss_pred             CCchhHHHHHHHHHHHHHHhhCchhH-------HHHHhhHHhcCcchHHHHHHHHHHHHHhhcCHHHHHHhhhhhhhHHH
Confidence            666666555554 4555666533222       34455555556666666666677766443322221  1    18888


Q ss_pred             HHhccCCHHHHHHHHHHHHHhh
Q 044999          305 RILREGDNEANAAAADVLWDLA  326 (461)
Q Consensus       305 ~ll~~~~~~~~~~a~~~L~~l~  326 (461)
                      +-..+.+..+|..|+.+|..+.
T Consensus       455 qay~S~SS~VRKtaVfCLVamv  476 (516)
T KOG2956|consen  455 QAYDSTSSTVRKTAVFCLVAMV  476 (516)
T ss_pred             HHhcCchHHhhhhHHHhHHHHH
Confidence            8888999999999999999886

>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]

Probab=95.14  E-value=0.12  Score=43.20  Aligned_cols=141  Identities=11%  Similarity=0.119  Sum_probs=100.1

Q ss_pred             HHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhcc-----cCCHHHHHHHHHHHHHHhcC--ccchhhhhhcCCHHHHH
Q 044999          196 SRERACQAIGLLAVTGRARRLLVELGVIPGLVELFH-----IGDWTTKLVAGNTLGVVAAH--VEYITPVAEAGAIPLYA  268 (461)
Q Consensus       196 ~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~-----~~~~~~~~~a~~~L~~l~~~--~~~~~~~~~~g~i~~L~  268 (461)
                      -...++..|..++++++.+..+.+..+--.+...+.     +..+..+..++++++.+..+  ++....+....++|.++
T Consensus       116 RvcnaL~lLQclaShPetk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcL  195 (315)
T COG5209         116 RVCNALNLLQCLASHPETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCL  195 (315)
T ss_pred             HHHHHHHHHHHHhcCcchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHH
Confidence            345777888888999988988888766544555554     23456788899999999887  45566777789999999


Q ss_pred             HHhCCCChhHHHHHHHHHHHhccCcccHHHHH--------------HHHHHHhccCCHHHHHHHHHHHHHhhCCCCchhH
Q 044999          269 ELLQGPDSTGKEISEDVFCILAVSEANANAIA--------------EHLVRILREGDNEANAAAADVLWDLAGYKHSVPV  334 (461)
Q Consensus       269 ~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~i~--------------~~l~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~  334 (461)
                      .++..+++--+..++.++..+-.++..-..+.              ....++.+.+.......++++-..|+..+..+..
T Consensus       196 rIme~gSElSktvaifI~qkil~dDvGLqYiCqT~eRFyAv~~vln~mv~qlVs~~~~RLlKh~iRcYlRLsd~p~aR~l  275 (315)
T COG5209         196 RIMELGSELSKTVAIFIFQKILGDDVGLQYICQTFERFYAVNLVLNSMVSQLVSLGSTRLLKHAIRCYLRLSDKPHARAL  275 (315)
T ss_pred             HHHHhhhHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHheeecCCHhHHHH
Confidence            99998877777777777777776666533322              2333344556677777888888888777666554


Q ss_pred             Hh
Q 044999          335 IR  336 (461)
Q Consensus       335 l~  336 (461)
                      +.
T Consensus       276 L~  277 (315)
T COG5209         276 LS  277 (315)
T ss_pred             Hh
Confidence            43

>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5

Probab=94.84  E-value=0.15  Score=34.82  Aligned_cols=66  Identities=14%  Similarity=0.119  Sum_probs=57.2

Q ss_pred             HHHHHHHHHHhhCCCCchhHHhhcCCHHHHHHhhcC-CCHHHHHHHHHHHHHhcCChhhHHHHHhCC
Q 044999          315 NAAAADVLWDLAGYKHSVPVIRNSGAIPILVNLLRG-ENDEVREKVSGAIAQLSYNEADRVALADAG  380 (461)
Q Consensus       315 ~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~  380 (461)
                      .+.|++++++++..+.....+.+.++++.++++... +...+|-.+..+|+-++...+..+.+.+.|
T Consensus         4 lKaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~~G~~~L~~~g   70 (73)
T PF14668_consen    4 LKAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTEEGAEILDELG   70 (73)
T ss_pred             HHHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCHHHHHHHHHcC
Confidence            457899999999998888888888999999999874 567799999999999999888888877765

>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]

Probab=94.73  E-value=3.6  Score=39.04  Aligned_cols=144  Identities=14%  Similarity=0.213  Sum_probs=99.0

Q ss_pred             CCCcHHHhHHHHHHHhhcCCHHHHHHHHHHHHhhc-----CCCchhHHHh--hHHHHHHhhccCCCCCCCcHHHHHH-HH
Q 044999            4 PDTNWEEAFNRFEQAVVSGSEALQVKALTKLARVS-----KFAPQDILAA--TIPILARLLGENNFSGNLTRSIQQA-AA   75 (461)
Q Consensus         4 ~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~la-----~~~~~~~l~~--~i~~l~~~l~~~~~~~~~~~~~~~~-a~   75 (461)
                      |+.....+...+..+.+.+++.-|..|...+..+.     +..+++.+.+  ..+-+-+++.++..|+.--+.+-+. +.
T Consensus         5 pep~r~~a~~~~~~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~i   84 (698)
T KOG2611|consen    5 PEPERSPALDDCLKLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISI   84 (698)
T ss_pred             cccccccchhhHHHHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHH
Confidence            55556666677888888888888988888888888     3344555555  6777888888877776644555566 88


Q ss_pred             HHHHHHHhcCCchh--HHHHHhcCCHHHHHhcCCCC-CHH------HHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHH
Q 044999           76 YCLKQIASQADGAL--ATEIGQSGVINSVLRLFPQS-DDS------FRTVLVKCLRVFVTFGNENRVIVARNGGLEIVID  146 (461)
Q Consensus        76 ~~L~~l~~~~~~~~--~~~~~~~~~l~~L~~ll~~~-~~~------~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~  146 (461)
                      ..|..+|.  .++.  ...+.  +-||.|...++.+ +++      +...+-.|+...+ ..+.....+...|+++.+.+
T Consensus        85 tvLacFC~--~pElAsh~~~v--~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va-~~e~G~~~Lia~G~~~~~~Q  159 (698)
T KOG2611|consen   85 TVLACFCR--VPELASHEEMV--SRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVA-TAEAGLMTLIASGGLRVIAQ  159 (698)
T ss_pred             HHHHHHhC--ChhhccCHHHH--HhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHh-cCCchhHHHHhcCchHHHHH
Confidence            88899998  4442  22332  3577888777632 222      3444555666666 44688899999999999998


Q ss_pred             HhcCCC
Q 044999          147 LLNSCN  152 (461)
Q Consensus       147 ll~~~~  152 (461)
                      +-.-.+
T Consensus       160 ~y~~~~  165 (698)
T KOG2611|consen  160 MYELPD  165 (698)
T ss_pred             HHhCCC
Confidence            765443

>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=94.62  E-value=8.5  Score=42.08  Aligned_cols=144  Identities=15%  Similarity=0.147  Sum_probs=96.5

Q ss_pred             CHHHHHhcCCCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHhh-CChHHHHHH
Q 044999           98 VINSVLRLFPQSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLNSCNDGTRRYLLEILSALA-LLREVRRVL  176 (461)
Q Consensus        98 ~l~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~-~~~~~~~~~  176 (461)
                      .+..++..+..+...+|..|.+|+..+...++...   .....-..+..-+.++...||+.|+..++... .+++...+.
T Consensus       817 yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL---~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~~e~~~qy  893 (1692)
T KOG1020|consen  817 YLKLILSVLGENAIALRTKALKCLSMIVEADPSVL---SRPDVQEAVHGRLNDSSASVREAALDLVGRFVLSIPELIFQY  893 (1692)
T ss_pred             HHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhh---cCHHHHHHHHHhhccchhHHHHHHHHHHhhhhhccHHHHHHH
Confidence            46777788887788888889999988887664432   11111222333344556688999999888776 556555544


Q ss_pred             HhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhcccCCHHHHHHHHHHHHHHhcC
Q 044999          177 ICLGGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRARRLLVELGVIPGLVELFHIGDWTTKLVAGNTLGVVAAH  251 (461)
Q Consensus       177 ~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~  251 (461)
                      .+     .+.+-+.++...||..+++.++.++...++-..+.+  ....++.-..++...++..+..++.++...
T Consensus       894 Y~-----~i~erIlDtgvsVRKRvIKIlrdic~e~pdf~~i~~--~cakmlrRv~DEEg~I~kLv~etf~klWF~  961 (1692)
T KOG1020|consen  894 YD-----QIIERILDTGVSVRKRVIKILRDICEETPDFSKIVD--MCAKMLRRVNDEEGNIKKLVRETFLKLWFT  961 (1692)
T ss_pred             HH-----HHHhhcCCCchhHHHHHHHHHHHHHHhCCChhhHHH--HHHHHHHHhccchhHHHHHHHHHHHHHhcc
Confidence            33     344555567789999999999999888777443332  233344444455556899999999999876

>KOG1243 consensus Protein kinase [General function prediction only]

Probab=94.60  E-value=0.69  Score=45.73  Aligned_cols=187  Identities=16%  Similarity=0.104  Sum_probs=126.4

Q ss_pred             HhcCCHHHHHhcCCCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHhhCChHHH
Q 044999           94 GQSGVINSVLRLFPQSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLNSCNDGTRRYLLEILSALALLREVR  173 (461)
Q Consensus        94 ~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~  173 (461)
                      ++.++++.|+++++..|..+|.....-+-.+...   ....+.+..+++.+..-+.+.++.+|+.++.++..++..-..+
T Consensus       327 yq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~---Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~  403 (690)
T KOG1243|consen  327 YQVRIIPVLLKLFKSPDRQIRLLLLQYIEKYIDH---LTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKR  403 (690)
T ss_pred             cccchhhhHHHHhcCcchHHHHHHHHhHHHHhhh---cCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchh
Confidence            5677899999999999999888777776666642   2456677778999999999999999999999998887221111


Q ss_pred             HHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhcccCCHHHHHHHHHHHHHHhcCcc
Q 044999          174 RVLICLGGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRARRLLVELGVIPGLVELFHIGDWTTKLVAGNTLGVVAAHVE  253 (461)
Q Consensus       174 ~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~  253 (461)
                        ......+..+-+.-.+.+..+|....-+++.++..-....  .+.-.+..+..-++++-...+..+..+++......+
T Consensus       404 --~Ln~Ellr~~ar~q~d~~~~irtntticlgki~~~l~~~~--R~~vL~~aftralkdpf~paR~a~v~~l~at~~~~~  479 (690)
T KOG1243|consen  404 --NLNGELLRYLARLQPDEHGGIRTNTTICLGKIAPHLAASV--RKRVLASAFTRALKDPFVPARKAGVLALAATQEYFD  479 (690)
T ss_pred             --hhcHHHHHHHHhhCccccCcccccceeeecccccccchhh--hccccchhhhhhhcCCCCCchhhhhHHHhhcccccc
Confidence              2222234445554445567889998889988877643311  112234455556677767777777777766555422


Q ss_pred             chhhhhhcCCHHHHHHHhCCCChhHHHHHHHHHHHh
Q 044999          254 YITPVAEAGAIPLYAELLQGPDSTGKEISEDVFCIL  289 (461)
Q Consensus       254 ~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l  289 (461)
                      ..  =+...++|.+..+..+++..++..+-.++...
T Consensus       480 ~~--~va~kIlp~l~pl~vd~e~~vr~~a~~~i~~f  513 (690)
T KOG1243|consen  480 QS--EVANKILPSLVPLTVDPEKTVRDTAEKAIRQF  513 (690)
T ss_pred             hh--hhhhhccccccccccCcccchhhHHHHHHHHH
Confidence            22  13345578888888888888887776665543

>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]

Probab=94.52  E-value=0.59  Score=39.32  Aligned_cols=146  Identities=13%  Similarity=0.038  Sum_probs=101.0

Q ss_pred             HHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhcCC-----ChHHHHHHHHHHHHhhC--ChHHHHHHHhcCCHHHHH
Q 044999          114 RTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLNSC-----NDGTRRYLLEILSALAL--LREVRRVLICLGGLRYLV  186 (461)
Q Consensus       114 ~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~-----~~~~~~~a~~~L~~l~~--~~~~~~~~~~~~~l~~l~  186 (461)
                      +...+..+.....+.++.+..+.+..+.-.+..+|...     .+.+|..++.+++.+..  +......+....++|.++
T Consensus       116 RvcnaL~lLQclaShPetk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcL  195 (315)
T COG5209         116 RVCNALNLLQCLASHPETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCL  195 (315)
T ss_pred             HHHHHHHHHHHHhcCcchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHH
Confidence            33344444444446779999999888766666666432     24788999999999993  345566777889999999


Q ss_pred             HHHcCCCHHHHHHHHHHHHHhhcCchhHHHHHh--------cCChHHHHHhc-ccCCHHHHHHHHHHHHHHhcCccchhh
Q 044999          187 EAVSFGSMVSRERACQAIGLLAVTGRARRLLVE--------LGVIPGLVELF-HIGDWTTKLVAGNTLGVVAAHVEYITP  257 (461)
Q Consensus       187 ~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~--------~~~i~~L~~ll-~~~~~~~~~~a~~~L~~l~~~~~~~~~  257 (461)
                      ++...+++--+.-|+.++..+..++..-+.+.+        ...+..++..+ ..+......++.++-..++..+..|..
T Consensus       196 rIme~gSElSktvaifI~qkil~dDvGLqYiCqT~eRFyAv~~vln~mv~qlVs~~~~RLlKh~iRcYlRLsd~p~aR~l  275 (315)
T COG5209         196 RIMELGSELSKTVAIFIFQKILGDDVGLQYICQTFERFYAVNLVLNSMVSQLVSLGSTRLLKHAIRCYLRLSDKPHARAL  275 (315)
T ss_pred             HHHHhhhHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHheeecCCHhHHHH
Confidence            999999988888888888888777665333332        12233333322 345667788888888888887777665


Q ss_pred             hh
Q 044999          258 VA  259 (461)
Q Consensus       258 ~~  259 (461)
                      +.
T Consensus       276 L~  277 (315)
T COG5209         276 LS  277 (315)
T ss_pred             Hh
Confidence            54

>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]

Probab=94.47  E-value=1.2  Score=42.70  Aligned_cols=152  Identities=14%  Similarity=0.100  Sum_probs=110.6

Q ss_pred             HHHHHhcCCCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhcCCCh----HHHHHHHHHHHHhhCChHHHH
Q 044999           99 INSVLRLFPQSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLNSCND----GTRRYLLEILSALALLREVRR  174 (461)
Q Consensus        99 l~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~----~~~~~a~~~L~~l~~~~~~~~  174 (461)
                      ...+.+.+.+++...+..+...+..++. +......+....++..|..+..+.+.    ++....+.++..+-.+.-...
T Consensus        85 a~~i~e~l~~~~~~~~~~a~k~l~sls~-d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvsW  163 (713)
T KOG2999|consen   85 AKRIMEILTEGNNISKMEALKELDSLSL-DPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVSW  163 (713)
T ss_pred             HHHHHHHHhCCCcHHHHHHHHHHhhccc-cHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceeee
Confidence            3556777788888778888888888874 55677888888899999999987754    555566666666554333444


Q ss_pred             HHHhcCCHHHHHHHHcCC--CHHHHHHHHHHHHHhhcCchh-HHHHHhcCChHHHHHhcccCCHHHHHHHHHHHHHHhcC
Q 044999          175 VLICLGGLRYLVEAVSFG--SMVSRERACQAIGLLAVTGRA-RRLLVELGVIPGLVELFHIGDWTTKLVAGNTLGVVAAH  251 (461)
Q Consensus       175 ~~~~~~~l~~l~~~l~~~--~~~~~~~a~~~L~~l~~~~~~-~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~  251 (461)
                      ..+...++..+..+....  +..+-..|+..|.++....+. +..+.+.--++.|+..++..+..++..|...+-.+...
T Consensus       164 ~~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n~~i~~~aial~nal~~~  243 (713)
T KOG2999|consen  164 ESVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIALLNALFRK  243 (713)
T ss_pred             eecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHHHHHHhh
Confidence            444445565565555333  556788999999999988886 77888888899999999998888888877666655544

>KOG2137 consensus Protein kinase [Signal transduction mechanisms]

Probab=94.44  E-value=2.2  Score=42.60  Aligned_cols=137  Identities=12%  Similarity=0.063  Sum_probs=96.1

Q ss_pred             HHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHhhCChHHHHHHHhcCCHHHHHHH-HcCCCHHHHHHHHHHHHHhhcCch
Q 044999          134 IVARNGGLEIVIDLLNSCNDGTRRYLLEILSALALLREVRRVLICLGGLRYLVEA-VSFGSMVSRERACQAIGLLAVTGR  212 (461)
Q Consensus       134 ~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~~-l~~~~~~~~~~a~~~L~~l~~~~~  212 (461)
                      ..+...+++.|..-+++.+..+++.++..+..+++.-+  -.++..-++|.+-.+ +.+.+..++..++.++..+...- 
T Consensus       384 e~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD--~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~l-  460 (700)
T KOG2137|consen  384 EEVKEKILPLLYRSLEDSDVQIQELALQILPTVAESID--VPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQRL-  460 (700)
T ss_pred             HHHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhcc--HHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHHHH-
Confidence            33455578888888899999999999999998884333  234444567776555 34557799999999999998211 


Q ss_pred             hHHHHHhcCChHHHHHhcccCCHHHHHHHHHHHHHHhcCccchhhhhhcCCHHHHHHHhCCCC
Q 044999          213 ARRLLVELGVIPGLVELFHIGDWTTKLVAGNTLGVVAAHVEYITPVAEAGAIPLYAELLQGPD  275 (461)
Q Consensus       213 ~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~ll~~~~  275 (461)
                      ++..+.+  .+..+....+..++.+......+..++......+..+..+.++|.++.+...+.
T Consensus       461 D~~~v~d--~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~~g~ev~~~~VlPlli~ls~~~~  521 (700)
T KOG2137|consen  461 DKAAVLD--ELLPILKCIKTRDPAIVMGFLRIYEALALIIYSGVEVMAENVLPLLIPLSVAPS  521 (700)
T ss_pred             HHHHhHH--HHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcccceeeehhhhhhhhhhhhhccc
Confidence            1222222  466666777788899988888888888776555455556677888888776554

>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=94.44  E-value=0.3  Score=50.98  Aligned_cols=138  Identities=23%  Similarity=0.239  Sum_probs=104.7

Q ss_pred             ChHHHHHhcc----cCCHHHHHHHHHHHHHHhcC-ccchhhhhhcCCHHHHHHHhC-CCChhHHHHHHHHHHHhccCccc
Q 044999          222 VIPGLVELFH----IGDWTTKLVAGNTLGVVAAH-VEYITPVAEAGAIPLYAELLQ-GPDSTGKEISEDVFCILAVSEAN  295 (461)
Q Consensus       222 ~i~~L~~ll~----~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~g~i~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~~~  295 (461)
                      +.|.+++.++    .++|+++..|.-+|+.+..- .+.+..-     +|.|+..+. +++|-+|.++..+++.|+..-++
T Consensus       920 f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~fces~-----l~llftimeksp~p~IRsN~VvalgDlav~fpn  994 (1251)
T KOG0414|consen  920 FAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEFCESH-----LPLLFTIMEKSPSPRIRSNLVVALGDLAVRFPN  994 (1251)
T ss_pred             HHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHHHHHH-----HHHHHHHHhcCCCceeeecchheccchhhhccc
Confidence            4556666664    45789999999999887654 3444333     788999986 77999999999999999765554


Q ss_pred             -HHHHHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCchhHHhhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcC
Q 044999          296 -ANAIAEHLVRILREGDNEANAAAADVLWDLAGYKHSVPVIRNSGAIPILVNLLRGENDEVREKVSGAIAQLSY  368 (461)
Q Consensus       296 -~~~i~~~l~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~  368 (461)
                       -+...+.+...|++.++.+|..|+..|.+|-.++    .+.--|-+..+..++.+++++++.-|-....-|+.
T Consensus       995 lie~~T~~Ly~rL~D~~~~vRkta~lvlshLILnd----miKVKGql~eMA~cl~D~~~~IsdlAk~FF~Els~ 1064 (1251)
T KOG0414|consen  995 LIEPWTEHLYRRLRDESPSVRKTALLVLSHLILND----MIKVKGQLSEMALCLEDPNAEISDLAKSFFKELSS 1064 (1251)
T ss_pred             ccchhhHHHHHHhcCccHHHHHHHHHHHHHHHHhh----hhHhcccHHHHHHHhcCCcHHHHHHHHHHHHHhhh
Confidence             3344499999999999999999999999997542    23344778888999999999888877744444443

>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=94.40  E-value=7.4  Score=40.46  Aligned_cols=365  Identities=12%  Similarity=0.093  Sum_probs=186.4

Q ss_pred             HHHHHhhcCCHHHHHHHHHHHHhhc--CCCchhHHHhhHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHhcCCchhHH
Q 044999           14 RFEQAVVSGSEALQVKALTKLARVS--KFAPQDILAATIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQADGALAT   91 (461)
Q Consensus        14 ~l~~ll~~~~~~~~~~a~~~l~~la--~~~~~~~l~~~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~   91 (461)
                      .++..+.|.---+|.+|+..++..+  +-.....+.+++....+.|..     +.+..++..|+.+|..+.+. .+....
T Consensus       466 hVfP~f~s~~g~Lrarac~vl~~~~~~df~d~~~l~~ale~t~~~l~~-----d~~lPV~VeAalALq~fI~~-~~~~~e  539 (1010)
T KOG1991|consen  466 HVFPEFQSPYGYLRARACWVLSQFSSIDFKDPNNLSEALELTHNCLLN-----DNELPVRVEAALALQSFISN-QEQADE  539 (1010)
T ss_pred             HhhHhhcCchhHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHhcc-----CCcCchhhHHHHHHHHHHhc-chhhhh
Confidence            3455566777788999999999999  444444556688888888873     23456888899999999984 444434


Q ss_pred             HHHhc--CCHHHHHhcCCCCCHHHHHHHHHHHH-HHhccChhhHHHHHHcCCHHHHHHHhcC---CC---hHHHHHHHHH
Q 044999           92 EIGQS--GVINSVLRLFPQSDDSFRTVLVKCLR-VFVTFGNENRVIVARNGGLEIVIDLLNS---CN---DGTRRYLLEI  162 (461)
Q Consensus        92 ~~~~~--~~l~~L~~ll~~~~~~~~~~~~~~l~-~l~~~~~~~~~~~~~~g~i~~L~~ll~~---~~---~~~~~~a~~~  162 (461)
                      .+..+  +.++.|.++.+.-+.+........+. ..+..-......+. ......+.+++..   .+   .+-...|..+
T Consensus       540 ~~~~hvp~~mq~lL~L~ne~End~Lt~vme~iV~~fseElsPfA~eL~-q~La~~F~k~l~~~~~~~~~~ddk~iaA~Gi  618 (1010)
T KOG1991|consen  540 KVSAHVPPIMQELLKLSNEVENDDLTNVMEKIVCKFSEELSPFAVELC-QNLAETFLKVLQTSEDEDESDDDKAIAASGI  618 (1010)
T ss_pred             hHhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHhhchhHHHHH-HHHHHHHHHHHhccCCCCccchHHHHHHHHH
Confidence            44332  44566666666544443333332222 33321111111121 1234456666653   11   2333444444


Q ss_pred             HHHhh---CChHHHHHHH---hcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCchh-HHHHHhcCChHHHHHhcccCCH
Q 044999          163 LSALA---LLREVRRVLI---CLGGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRA-RRLLVELGVIPGLVELFHIGDW  235 (461)
Q Consensus       163 L~~l~---~~~~~~~~~~---~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~-~~~~~~~~~i~~L~~ll~~~~~  235 (461)
                      |..+.   ..-+....+.   +.-+++.+-..|++.-.+.-+.++..+.+++...+. ...|=  |.++.+.+.+++...
T Consensus       619 L~Ti~Til~s~e~~p~vl~~le~~~l~vi~~iL~~~i~dfyeE~~ei~~~~t~~~~~Isp~mW--~ll~li~e~~~~~~~  696 (1010)
T KOG1991|consen  619 LRTISTILLSLENHPEVLKQLEPIVLPVIGFILKNDITDFYEELLEIVSSLTFLSKEISPIMW--GLLELILEVFQDDGI  696 (1010)
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhhhhcccCHHHH--HHHHHHHHHHhhhhH
Confidence            44433   2222222222   223566666667777667778888888777654432 22221  246677777777666


Q ss_pred             HHHHHHHHHHHHHhcCccchhhhhhcC-----CHHHHHHHhCCC--ChhHHHHHHHHHHHhccCccc-HH----HHHHHH
Q 044999          236 TTKLVAGNTLGVVAAHVEYITPVAEAG-----AIPLYAELLQGP--DSTGKEISEDVFCILAVSEAN-AN----AIAEHL  303 (461)
Q Consensus       236 ~~~~~a~~~L~~l~~~~~~~~~~~~~g-----~i~~L~~ll~~~--~~~~~~~a~~~L~~l~~~~~~-~~----~i~~~l  303 (461)
                      +.-....-+|.|......  ..+.+.+     +...+..++.+.  ...-.+.|+..+..+..+-.+ -.    .+++..
T Consensus       697 dyf~d~~~~l~N~vt~g~--~~~~s~~~y~~il~~i~~~~l~~e~~~D~d~~~a~kLle~iiL~~kg~~dq~iplf~~~a  774 (1010)
T KOG1991|consen  697 DYFTDMMPALHNYVTYGT--PSLLSNPDYLQILLEIIKKVLTSENGEDSDCESACKLLEVIILNCKGLLDQYIPLFLELA  774 (1010)
T ss_pred             HHHHHHHHHHhhheeeCc--hhhhccchHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHhcCcHhhHhHHHHHHH
Confidence            666677777887655311  1222221     223334445443  223344566666665332222 11    122333


Q ss_pred             HHHhcc--CCHHHHHHHHHHHHHhh-CCCCc-hhHHhhcCCHHHHH----Hhh----cCCCHHHHHHHHHHHHHhcCChh
Q 044999          304 VRILRE--GDNEANAAAADVLWDLA-GYKHS-VPVIRNSGAIPILV----NLL----RGENDEVREKVSGAIAQLSYNEA  371 (461)
Q Consensus       304 ~~ll~~--~~~~~~~~a~~~L~~l~-~~~~~-~~~l~~~g~i~~L~----~ll----~~~~~~v~~~a~~~L~~l~~~~~  371 (461)
                      +.-+..  .+...+..++....+.- .+|.. ...+-+.|.....-    +..    +..+..+..-++.+|..+-..+.
T Consensus       775 ~~~l~~~~e~s~~~~~~leVvinalyynP~ltL~iLe~~~~~~~ff~~wf~~~~~~~~~HDkKlcvL~l~tli~l~~~~~  854 (1010)
T KOG1991|consen  775 LSRLTREVETSELRVMLLEVVINALYYNPKLTLGILENQGFLNNFFTLWFQFINQFKKVHDKKLCVLGLLTLISLGQDPQ  854 (1010)
T ss_pred             HHHHhccccchHHHHHHHHHHHHHHHcCcHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccccCC
Confidence            333333  45667777776555444 45543 33344445433322    222    21222333333344444422222


Q ss_pred             hHHHHHhCCChHHHHHhcc
Q 044999          372 DRVALADAGAVPIMIELLH  390 (461)
Q Consensus       372 ~~~~~~~~~~i~~L~~ll~  390 (461)
                      ......- +..+.++.++.
T Consensus       855 ~~~e~l~-~l~~~lv~L~~  872 (1010)
T KOG1991|consen  855 LPSEVLG-QLGPALVELLL  872 (1010)
T ss_pred             chHHHHH-HHHHHHHHHHH
Confidence            2222222 56777777764

>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

Probab=94.33  E-value=4.3  Score=39.45  Aligned_cols=151  Identities=18%  Similarity=0.131  Sum_probs=93.4

Q ss_pred             HHhcCCCCCHHHHHHHHHHHH-HHhccChhhHHHHHHcCCHHHHHHH-hcCCChHHHHHHHHHHHHhhCChHHHHHHHhc
Q 044999          102 VLRLFPQSDDSFRTVLVKCLR-VFVTFGNENRVIVARNGGLEIVIDL-LNSCNDGTRRYLLEILSALALLREVRRVLICL  179 (461)
Q Consensus       102 L~~ll~~~~~~~~~~~~~~l~-~l~~~~~~~~~~~~~~g~i~~L~~l-l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~  179 (461)
                      +-+++.+.++..+-..+..+. ..+...        ..|++..++.. .++.+.++|+.|+.+|.-+|..+        .
T Consensus       521 I~ell~d~ds~lRy~G~fs~alAy~GTg--------n~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D--------~  584 (926)
T COG5116         521 INELLYDKDSILRYNGVFSLALAYVGTG--------NLGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDD--------R  584 (926)
T ss_pred             HHHHhcCchHHhhhccHHHHHHHHhcCC--------cchhHhhhheeecccCchHHHHHHHHheeeeEecC--------c
Confidence            445555666655544444443 222111        23455666665 56778899999999998887322        2


Q ss_pred             CCHHHHHHHHc-CCCHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhcccCCHHHHHHHHHHHHHHhcC--ccchh
Q 044999          180 GGLRYLVEAVS-FGSMVSRERACQAIGLLAVTGRARRLLVELGVIPGLVELFHIGDWTTKLVAGNTLGVVAAH--VEYIT  256 (461)
Q Consensus       180 ~~l~~l~~~l~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~--~~~~~  256 (461)
                      ..++..+++|. +.+..+|...+-+|+-.+.....+.      ++..|-.++.+.+.-+|..|+-+++.+...  ++.-.
T Consensus       585 ~~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~~------a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~~Lnp  658 (926)
T COG5116         585 DLLVGTVELLSESHNFHVRAGVAVALGIACAGTGDKV------ATDILEALMYDTNDFVRQSAMIAVGMILMQCNPELNP  658 (926)
T ss_pred             chhhHHHHHhhhccchhhhhhhHHHhhhhhcCCccHH------HHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCcccCh
Confidence            23555666665 4588999999999998877665532      345666677788888898888888776543  22211


Q ss_pred             hhhhcCCHHHHHHHhCCCCh
Q 044999          257 PVAEAGAIPLYAELLQGPDS  276 (461)
Q Consensus       257 ~~~~~g~i~~L~~ll~~~~~  276 (461)
                      .+  .+++..+.+++.+.+.
T Consensus       659 ~v--~~I~k~f~~vI~~Khe  676 (926)
T COG5116         659 NV--KRIIKKFNRVIVDKHE  676 (926)
T ss_pred             hH--HHHHHHHHHHHhhhhH
Confidence            11  2445666666665543

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=94.32  E-value=7.3  Score=40.10  Aligned_cols=187  Identities=18%  Similarity=0.128  Sum_probs=111.6

Q ss_pred             HHHHhh-CChHHHHHHHhcCCHHHHHHHHcCC-CHHHHHHHHHHHHHhhcCchhHHHHHhcCChH--HHHHhcccCCH-H
Q 044999          162 ILSALA-LLREVRRVLICLGGLRYLVEAVSFG-SMVSRERACQAIGLLAVTGRARRLLVELGVIP--GLVELFHIGDW-T  236 (461)
Q Consensus       162 ~L~~l~-~~~~~~~~~~~~~~l~~l~~~l~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~--~L~~ll~~~~~-~  236 (461)
                      ++++.. .++++.+.+++.+++..+...++.- ..+++..+++.+.+++...+.+..+.....+.  .+-.++..-+. +
T Consensus       494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~~~~f~~~~~~w~~~e  573 (699)
T KOG3665|consen  494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMIFEFIDFSVFKVLLNKWDSIE  573 (699)
T ss_pred             HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcchhh
Confidence            888888 8899999999999999999999855 66899999999999988776543332221222  33333433333 6


Q ss_pred             HHHHHHHHHHHHhcCccc-hhhhhhcCCHHHHHHHhCCCC-hhHHHHHHHHHHHhccCcccHHHHHHHHHHHhc-cCCHH
Q 044999          237 TKLVAGNTLGVVAAHVEY-ITPVAEAGAIPLYAELLQGPD-STGKEISEDVFCILAVSEANANAIAEHLVRILR-EGDNE  313 (461)
Q Consensus       237 ~~~~a~~~L~~l~~~~~~-~~~~~~~g~i~~L~~ll~~~~-~~~~~~a~~~L~~l~~~~~~~~~i~~~l~~ll~-~~~~~  313 (461)
                      .-..++..|..+..+.+. -.......+-..+.+....-. ...+.             .+...+.+.+.+++. +..+.
T Consensus       574 rsY~~~siLa~ll~~~~~~~~~~~r~~~~~~l~e~i~~~~~~~~~~-------------~~~~~f~~~~~~il~~s~~~g  640 (699)
T KOG3665|consen  574 RSYNAASILALLLSDSEKTTECVFRNSVNELLVEAISRWLTSEIRV-------------INDRSFFPRILRILRLSKSDG  640 (699)
T ss_pred             HHHHHHHHHHHHHhCCCcCccccchHHHHHHHHHHhhccCccceee-------------hhhhhcchhHHHHhcccCCCc
Confidence            667777788777765222 111111111112222221110 00000             000001122555554 44678


Q ss_pred             HHHHHHHHHHHhh-CCCCchhHHhhcCCHHHHHHhhcCC-CHHHHHHHHH
Q 044999          314 ANAAAADVLWDLA-GYKHSVPVIRNSGAIPILVNLLRGE-NDEVREKVSG  361 (461)
Q Consensus       314 ~~~~a~~~L~~l~-~~~~~~~~l~~~g~i~~L~~ll~~~-~~~v~~~a~~  361 (461)
                      .+..|++++.++. .++++...+.+.|+++.+...-... ...++..+..
T Consensus       641 ~~lWal~ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  690 (699)
T KOG3665|consen  641 SQLWALWTIKNVLEQNKEYCKLVRESNGFELIENIRVLSEVVDVKEEAVL  690 (699)
T ss_pred             hHHHHHHHHHHHHHcChhhhhhhHhccchhhhhhcchhHHHHHHHHHHHH
Confidence            8889999999999 4577888888889988888765432 3334444433

>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing

Probab=94.16  E-value=5.2  Score=37.78  Aligned_cols=158  Identities=18%  Similarity=0.145  Sum_probs=107.8

Q ss_pred             HHHHHHHHhccChhhHHHHHHcCCHHHHHHHhcCC--------------------------C----hHHHHHHHHHHH--
Q 044999          117 LVKCLRVFVTFGNENRVIVARNGGLEIVIDLLNSC--------------------------N----DGTRRYLLEILS--  164 (461)
Q Consensus       117 ~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~--------------------------~----~~~~~~a~~~L~--  164 (461)
                      ++..+-.+....+..-..+.+.+|+..+++.++..                          +    +.-|...++.|.  
T Consensus         4 av~~ld~~~~~~~~a~~~f~~~~G~~~li~rl~~Ev~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~r~~llK~lLk~   83 (379)
T PF06025_consen    4 AVRFLDTFIDSSPDAFAAFRNLNGLDILIDRLQYEVDFALEENKNEEAGSGIPPEYKESSVDGYSISYQRQQLLKSLLKF   83 (379)
T ss_pred             HHHHHHHHHhccHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcccccCCCCCCCCCcccccccccccCHHHHHHHHHHHHH
Confidence            34444455545555567777888888887655210                          0    012333343333  


Q ss_pred             --HhhC-Ch---HHHHHHHh-cCCHHHHHHHHcCC---CHHHHHHHHHHHHHhhcCchh-HHHHHhcCChHHHHHhcc-c
Q 044999          165 --ALAL-LR---EVRRVLIC-LGGLRYLVEAVSFG---SMVSRERACQAIGLLAVTGRA-RRLLVELGVIPGLVELFH-I  232 (461)
Q Consensus       165 --~l~~-~~---~~~~~~~~-~~~l~~l~~~l~~~---~~~~~~~a~~~L~~l~~~~~~-~~~~~~~~~i~~L~~ll~-~  232 (461)
                        .+.. ..   +.-+.+++ ......|..++++.   .+.+-..|+..+..+..+.+. -..+.+.|.++.+++.+. .
T Consensus        84 l~~~~~~~~~~~~~lrnl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~  163 (379)
T PF06025_consen   84 LSHAMQHSGGFGDRLRNLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITAK  163 (379)
T ss_pred             HHHHhccCCCcccccccccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhcc
Confidence              3333 22   22333455 44566666677665   457888999999999999888 778889999999999887 3


Q ss_pred             ---CCHHHHHHHHHHHHHHhcCccchhhhhhcCCHHHHHHHhCCC
Q 044999          233 ---GDWTTKLVAGNTLGVVAAHVEYITPVAEAGAIPLYAELLQGP  274 (461)
Q Consensus       233 ---~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~ll~~~  274 (461)
                         ++.++....-.++..+|-+....+.+.+.+.++.+++++.++
T Consensus       164 ~i~~s~e~l~~lP~~l~AicLN~~Gl~~~~~~~~l~~~f~if~s~  208 (379)
T PF06025_consen  164 GILPSSEVLTSLPNVLSAICLNNRGLEKVKSSNPLDKLFEIFTSP  208 (379)
T ss_pred             CCCCcHHHHHHHHHHHhHHhcCHHHHHHHHhcChHHHHHHHhCCH
Confidence               356777777788899999999999999999999999988765

This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=94.11  E-value=8.1  Score=39.80  Aligned_cols=190  Identities=12%  Similarity=0.063  Sum_probs=115.6

Q ss_pred             HHHHhhcCchh-HHHHHhcCChHHHHHhcc-cCCHHHHHHHHHHHHHHhcCccchhhhhhcCCHH--HHHHHhCCC-Chh
Q 044999          203 AIGLLAVTGRA-RRLLVELGVIPGLVELFH-IGDWTTKLVAGNTLGVVAAHVEYITPVAEAGAIP--LYAELLQGP-DST  277 (461)
Q Consensus       203 ~L~~l~~~~~~-~~~~~~~~~i~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~--~L~~ll~~~-~~~  277 (461)
                      ++++.+...+. ++.+.+.|+...+...++ -...+.+..+.+.+.+++...+.+........+.  .+..++... +.+
T Consensus       494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~~~~f~~~~~~w~~~e  573 (699)
T KOG3665|consen  494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMIFEFIDFSVFKVLLNKWDSIE  573 (699)
T ss_pred             HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcchhh
Confidence            88899888887 999999999999999998 4567788899999999998754443333222222  333344433 448


Q ss_pred             HHHHHHHHHHHhccCcccHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCchhHHhhcCCHHH-HHHhhc-CCCHHH
Q 044999          278 GKEISEDVFCILAVSEANANAIAEHLVRILREGDNEANAAAADVLWDLAGYKHSVPVIRNSGAIPI-LVNLLR-GENDEV  355 (461)
Q Consensus       278 ~~~~a~~~L~~l~~~~~~~~~i~~~l~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~-L~~ll~-~~~~~v  355 (461)
                      .-..++..|+.+..+.+.....         ..-+.+.+.-..++..+.   .............. +..++. +..+..
T Consensus       574 rsY~~~siLa~ll~~~~~~~~~---------~~r~~~~~~l~e~i~~~~---~~~~~~~~~~~f~~~~~~il~~s~~~g~  641 (699)
T KOG3665|consen  574 RSYNAASILALLLSDSEKTTEC---------VFRNSVNELLVEAISRWL---TSEIRVINDRSFFPRILRILRLSKSDGS  641 (699)
T ss_pred             HHHHHHHHHHHHHhCCCcCccc---------cchHHHHHHHHHHhhccC---ccceeehhhhhcchhHHHHhcccCCCch
Confidence            8888888888885543220000         000111222222222222   22111122222222 444444 456778


Q ss_pred             HHHHHHHHHHhcC-ChhhHHHHHhCCChHHHHHhccC-CCHHHHHHHHHHH
Q 044999          356 REKVSGAIAQLSY-NEADRVALADAGAVPIMIELLHD-ESEELRDNAAESL  404 (461)
Q Consensus       356 ~~~a~~~L~~l~~-~~~~~~~~~~~~~i~~L~~ll~~-~~~~~~~~a~~~L  404 (461)
                      +..|++++.++.. ++++...+.+.|+++.+...-.. ....++..+...+
T Consensus       642 ~lWal~ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  692 (699)
T KOG3665|consen  642 QLWALWTIKNVLEQNKEYCKLVRESNGFELIENIRVLSEVVDVKEEAVLVI  692 (699)
T ss_pred             HHHHHHHHHHHHHcChhhhhhhHhccchhhhhhcchhHHHHHHHHHHHHHh
Confidence            9999999999999 88888888899988888776522 2444444444433

>KOG1243 consensus Protein kinase [General function prediction only]

Probab=94.10  E-value=1.5  Score=43.46  Aligned_cols=182  Identities=16%  Similarity=0.172  Sum_probs=118.7

Q ss_pred             HhcCChHHHHHhcccCCHHHHHHHHHHHHHHhcC-ccchhhhhhcCCHHHHHHHhCCCChhHHHHHHHHHHHhccCcccH
Q 044999          218 VELGVIPGLVELFHIGDWTTKLVAGNTLGVVAAH-VEYITPVAEAGAIPLYAELLQGPDSTGKEISEDVFCILAVSEANA  296 (461)
Q Consensus       218 ~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~  296 (461)
                      .+.++++.++++++..+..+|..   .|.++-.. +......++..++|.+..-+.+.++-+|+..+.++..++..-..+
T Consensus       327 yq~~i~p~l~kLF~~~Dr~iR~~---LL~~i~~~i~~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~  403 (690)
T KOG1243|consen  327 YQVRIIPVLLKLFKSPDRQIRLL---LLQYIEKYIDHLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKR  403 (690)
T ss_pred             cccchhhhHHHHhcCcchHHHHH---HHHhHHHHhhhcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchh
Confidence            44568999999999999988877   45555444 455566778888999999999999999999999988876433322


Q ss_pred             HHHH----HHHHHHhccCCHHHHHHHHHHHHHhhCCCCchhHHhhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCChhh
Q 044999          297 NAIA----EHLVRILREGDNEANAAAADVLWDLAGYKHSVPVIRNSGAIPILVNLLRGENDEVREKVSGAIAQLSYNEAD  372 (461)
Q Consensus       297 ~~i~----~~l~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~  372 (461)
                       .+.    ..+.++-.+.++.+|....-+|+.++.+-....  .+.-.+-.+.+-+.++-...|..+..+++........
T Consensus       404 -~Ln~Ellr~~ar~q~d~~~~irtntticlgki~~~l~~~~--R~~vL~~aftralkdpf~paR~a~v~~l~at~~~~~~  480 (690)
T KOG1243|consen  404 -NLNGELLRYLARLQPDEHGGIRTNTTICLGKIAPHLAASV--RKRVLASAFTRALKDPFVPARKAGVLALAATQEYFDQ  480 (690)
T ss_pred             -hhcHHHHHHHHhhCccccCcccccceeeecccccccchhh--hccccchhhhhhhcCCCCCchhhhhHHHhhcccccch
Confidence             222    333333334456777777777777765421111  2222233455556666566778888877777763222


Q ss_pred             HHHHHhCCChHHHHHhccCCCHHHHHHHHHHHHHh
Q 044999          373 RVALADAGAVPIMIELLHDESEELRDNAAESLINF  407 (461)
Q Consensus       373 ~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l  407 (461)
                      ..  +...++|.+.-+..+.+..++..+-.++...
T Consensus       481 ~~--va~kIlp~l~pl~vd~e~~vr~~a~~~i~~f  513 (690)
T KOG1243|consen  481 SE--VANKILPSLVPLTVDPEKTVRDTAEKAIRQF  513 (690)
T ss_pred             hh--hhhhccccccccccCcccchhhHHHHHHHHH
Confidence            22  2334577777777777777777777666544

>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=93.96  E-value=9.1  Score=39.85  Aligned_cols=357  Identities=13%  Similarity=0.075  Sum_probs=190.5

Q ss_pred             HHHhHHHHHHHhh------c--CCHHHHHHHHHHHHhhc-----CCCchhHHHh-hHHHHHHhhccCCCCCCCcHHHHHH
Q 044999            8 WEEAFNRFEQAVV------S--GSEALQVKALTKLARVS-----KFAPQDILAA-TIPILARLLGENNFSGNLTRSIQQA   73 (461)
Q Consensus         8 ~~~~~~~l~~ll~------~--~~~~~~~~a~~~l~~la-----~~~~~~~l~~-~i~~l~~~l~~~~~~~~~~~~~~~~   73 (461)
                      ..+.++.+.+.+.      .  .++..+.-|.+.++.++     ++..+.++.. .++.+.=.+++    ..-  -.+..
T Consensus       408 l~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP~f~s----~~g--~Lrar  481 (1010)
T KOG1991|consen  408 LPKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVFPEFQS----PYG--YLRAR  481 (1010)
T ss_pred             hhhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhhHhhcC----chh--HHHHH
Confidence            4445556666666      2  34677788888898888     3444566666 44545444554    111  13444


Q ss_pred             HHHHHHHHHhcCCchhHHHHHhcCCHHHHHhcCC-CCCHHHHHHHHHHHHHHhccChhhHHHHHHc--CCHHHHHHHhcC
Q 044999           74 AAYCLKQIASQADGALATEIGQSGVINSVLRLFP-QSDDSFRTVLVKCLRVFVTFGNENRVIVARN--GGLEIVIDLLNS  150 (461)
Q Consensus        74 a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~ll~-~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~--g~i~~L~~ll~~  150 (461)
                      |++.+..+++. +......  -...++...+.|. +.+--|+..++.++..+....+.....+...  +.++.|+.+.+.
T Consensus       482 ac~vl~~~~~~-df~d~~~--l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne  558 (1010)
T KOG1991|consen  482 ACWVLSQFSSI-DFKDPNN--LSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSNE  558 (1010)
T ss_pred             HHHHHHHHHhc-cCCChHH--HHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHh
Confidence            99999999953 2111111  1123455556666 6666789999999998887665554444332  334455555555


Q ss_pred             CChHHHHHHHH-HHHHhh-CChHHHHHHHhcCCHHHHHHHHcC---C---CHHHHHHHHHHHHHhhc---Cchh-HHHHH
Q 044999          151 CNDGTRRYLLE-ILSALA-LLREVRRVLICLGGLRYLVEAVSF---G---SMVSRERACQAIGLLAV---TGRA-RRLLV  218 (461)
Q Consensus       151 ~~~~~~~~a~~-~L~~l~-~~~~~~~~~~~~~~l~~l~~~l~~---~---~~~~~~~a~~~L~~l~~---~~~~-~~~~~  218 (461)
                      .+.+.....+. .+...+ .-.+....+.. .....+.+++..   .   +.+-...|.++|..+..   +-++ ...+.
T Consensus       559 ~End~Lt~vme~iV~~fseElsPfA~eL~q-~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~Ti~Til~s~e~~p~vl~  637 (1010)
T KOG1991|consen  559 VENDDLTNVMEKIVCKFSEELSPFAVELCQ-NLAETFLKVLQTSEDEDESDDDKAIAASGILRTISTILLSLENHPEVLK  637 (1010)
T ss_pred             cchhHHHHHHHHHHHHHHHhhchhHHHHHH-HHHHHHHHHHhccCCCCccchHHHHHHHHHHHHHHHHHHHHhccHHHHH
Confidence            54444444443 233333 22222222222 244556666653   1   22334455555544432   2222 11222


Q ss_pred             --hcCChHHHHHhcccCCHHHHHHHHHHHHHHhcC-ccchhhhhhcCCHHHHHHHhCCCChhHHHHHHHHHHHhccCccc
Q 044999          219 --ELGVIPGLVELFHIGDWTTKLVAGNTLGVVAAH-VEYITPVAEAGAIPLYAELLQGPDSTGKEISEDVFCILAVSEAN  295 (461)
Q Consensus       219 --~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~  295 (461)
                        +..+++.+-.++++.-.++-+.++..+.++... ++....+  -|..+.+.+.++....+.-....-+|.|.......
T Consensus       638 ~le~~~l~vi~~iL~~~i~dfyeE~~ei~~~~t~~~~~Isp~m--W~ll~li~e~~~~~~~dyf~d~~~~l~N~vt~g~~  715 (1010)
T KOG1991|consen  638 QLEPIVLPVIGFILKNDITDFYEELLEIVSSLTFLSKEISPIM--WGLLELILEVFQDDGIDYFTDMMPALHNYVTYGTP  715 (1010)
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhhhhcccCHHH--HHHHHHHHHHHhhhhHHHHHHHHHHHhhheeeCch
Confidence              233455555566677777777777777777654 3333333  25567777777777777777888888888433221


Q ss_pred             --------HHHHHHHHHHHhccC--CHHHHHHHHHHHHHhhCC-CCchhHHhhcCCHHHHHHh----hcC--CCHHHHHH
Q 044999          296 --------ANAIAEHLVRILREG--DNEANAAAADVLWDLAGY-KHSVPVIRNSGAIPILVNL----LRG--ENDEVREK  358 (461)
Q Consensus       296 --------~~~i~~~l~~ll~~~--~~~~~~~a~~~L~~l~~~-~~~~~~l~~~g~i~~L~~l----l~~--~~~~v~~~  358 (461)
                              ...+...+-.++.+.  ...-.+.|++.+-.+.-+ ....+.     .+|.++++    +..  .+...+..
T Consensus       716 ~~~s~~~y~~il~~i~~~~l~~e~~~D~d~~~a~kLle~iiL~~kg~~dq-----~iplf~~~a~~~l~~~~e~s~~~~~  790 (1010)
T KOG1991|consen  716 SLLSNPDYLQILLEIIKKVLTSENGEDSDCESACKLLEVIILNCKGLLDQ-----YIPLFLELALSRLTREVETSELRVM  790 (1010)
T ss_pred             hhhccchHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHhcCcHhh-----HhHHHHHHHHHHHhccccchHHHHH
Confidence                    122225555666553  345566677777776532 111111     24444443    333  44556666


Q ss_pred             HHHHHH-HhcCChhhHHHHH-hCCC
Q 044999          359 VSGAIA-QLSYNEADRVALA-DAGA  381 (461)
Q Consensus       359 a~~~L~-~l~~~~~~~~~~~-~~~~  381 (461)
                      ++.+.. ++-.+|...-.+. +.|.
T Consensus       791 ~leVvinalyynP~ltL~iLe~~~~  815 (1010)
T KOG1991|consen  791 LLEVVINALYYNPKLTLGILENQGF  815 (1010)
T ss_pred             HHHHHHHHHHcCcHHHHHHHHHcCC
Confidence            665544 4444665544444 4444

>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=93.91  E-value=2.8  Score=41.72  Aligned_cols=102  Identities=11%  Similarity=0.026  Sum_probs=76.2

Q ss_pred             CChHHHHHhcccCCHHHHHHHHHHHHHHhcCccchhhhhhcCCHHHHHHHhCCCChhHHHHHHHHHHHhccCccc-HHHH
Q 044999          221 GVIPGLVELFHIGDWTTKLVAGNTLGVVAAHVEYITPVAEAGAIPLYAELLQGPDSTGKEISEDVFCILAVSEAN-ANAI  299 (461)
Q Consensus       221 ~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~-~~~i  299 (461)
                      |.+..++.-..+.+..+|..++..|..+.........-+-.+....+..-+.+..|.||..|..+|+.+-..+.. .-.+
T Consensus        85 ~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~dee~~v  164 (892)
T KOG2025|consen   85 GTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKDEECPV  164 (892)
T ss_pred             HHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCCCcccH
Confidence            356666666678889999999999999988644444445556677888888889999999999999999754443 3344


Q ss_pred             HHHHHHHhcc-CCHHHHHHHHHHH
Q 044999          300 AEHLVRILRE-GDNEANAAAADVL  322 (461)
Q Consensus       300 ~~~l~~ll~~-~~~~~~~~a~~~L  322 (461)
                      ...+..+++. ++++||..|+..|
T Consensus       165 ~n~l~~liqnDpS~EVRRaaLsnI  188 (892)
T KOG2025|consen  165 VNLLKDLIQNDPSDEVRRAALSNI  188 (892)
T ss_pred             HHHHHHHHhcCCcHHHHHHHHHhh
Confidence            4777788854 5899999876443

>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]

Probab=93.84  E-value=3.9  Score=40.70  Aligned_cols=222  Identities=14%  Similarity=0.101  Sum_probs=134.5

Q ss_pred             CHHHHHhcCCC----CCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhc-CCChHHHHHHHHHHHHhhCC-hH
Q 044999           98 VINSVLRLFPQ----SDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLN-SCNDGTRRYLLEILSALALL-RE  171 (461)
Q Consensus        98 ~l~~L~~ll~~----~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll~-~~~~~~~~~a~~~L~~l~~~-~~  171 (461)
                      +-|...+.+++    +|+..+..|..++..+.+-+.+.+.     .-+|.++..++ +++|.+|..|+-.++.+... ..
T Consensus       893 F~pvVeE~csn~~~~sd~~lq~aA~l~L~klMClS~~fc~-----ehlpllIt~mek~p~P~IR~NaVvglgD~~vcfN~  967 (1128)
T COG5098         893 FKPVVEEGCSNSSRFSDEELQVAAYLSLYKLMCLSFEFCS-----EHLPLLITSMEKHPIPRIRANAVVGLGDFLVCFNT  967 (1128)
T ss_pred             hhHHHHHHhccccccCCHHHHHHHHHHHHHHHHHhHHHHH-----HHHHHHHHHHhhCCCcceeccceeeccccceehhh
Confidence            34444555554    6888888888888855543322211     23778888776 88999999999999887732 22


Q ss_pred             HHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhcccCCHHHHHHHHHHHHHHhcC
Q 044999          172 VRRVLICLGGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRARRLLVELGVIPGLVELFHIGDWTTKLVAGNTLGVVAAH  251 (461)
Q Consensus       172 ~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~  251 (461)
                      ....     .-..|.+-|.+.+..+|+.++.++..|......+    -.|-.+.+...+.+++.++...|-..+..++..
T Consensus       968 ~~de-----~t~yLyrrL~De~~~V~rtclmti~fLilagq~K----VKGqlg~ma~~L~deda~Isdmar~fft~~a~K 1038 (1128)
T COG5098         968 TADE-----HTHYLYRRLGDEDADVRRTCLMTIHFLILAGQLK----VKGQLGKMALLLTDEDAEISDMARHFFTQIAKK 1038 (1128)
T ss_pred             hhHH-----HHHHHHHHhcchhhHHHHHHHHHHHHHHHcccee----eccchhhhHhhccCCcchHHHHHHHHHHHHHhc
Confidence            2222     2345667777889999999999999986544331    246678889999999999999888888888765


Q ss_pred             ccchhhhhhcCCHHHHHHHhCCC--ChhHHHHHHHHHHHhccCcccHHHHHHH-HHHHhccCCHHHHHHHHHHHHHhhCC
Q 044999          252 VEYITPVAEAGAIPLYAELLQGP--DSTGKEISEDVFCILAVSEANANAIAEH-LVRILREGDNEANAAAADVLWDLAGY  328 (461)
Q Consensus       252 ~~~~~~~~~~g~i~~L~~ll~~~--~~~~~~~a~~~L~~l~~~~~~~~~i~~~-l~~ll~~~~~~~~~~a~~~L~~l~~~  328 (461)
                      +..    +-.|++..+-.+-.+.  ..+--+...+.|..+.......+++.+. ..++++.....--...+..+.||-..
T Consensus      1039 dNt----~yn~fidifs~ls~~ae~g~e~fk~II~FLt~fI~kerh~kql~E~L~~rl~rc~tq~qwd~~~~~l~nLp~k 1114 (1128)
T COG5098        1039 DNT----MYNGFIDIFSTLSSDAENGQEPFKLIIGFLTDFISKERHQKQLKESLFLRLLRCNTQSQWDKLLCSLFNLPDK 1114 (1128)
T ss_pred             ccc----hhhhhHHHHHHcCchhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCcc
Confidence            221    1234444333332211  1111334455555555555455555533 33455555444444556666666544


Q ss_pred             CCchhHHhh
Q 044999          329 KHSVPVIRN  337 (461)
Q Consensus       329 ~~~~~~l~~  337 (461)
                      .++...+.+
T Consensus      1115 ~~~~~~Ll~ 1123 (1128)
T COG5098        1115 IAGSGGLLN 1123 (1128)
T ss_pred             ccchhhHhh
Confidence            344433333

>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]

Probab=93.74  E-value=5.8  Score=36.89  Aligned_cols=302  Identities=14%  Similarity=0.104  Sum_probs=155.0

Q ss_pred             cHHHhHHHHHHHhhcCCH-HHHHHHHHHHHhhc-CCCchhHH--HhhHHHHHHhhcc----CCCCCCCcHHHHHHHHHHH
Q 044999            7 NWEEAFNRFEQAVVSGSE-ALQVKALTKLARVS-KFAPQDIL--AATIPILARLLGE----NNFSGNLTRSIQQAAAYCL   78 (461)
Q Consensus         7 ~~~~~~~~l~~ll~~~~~-~~~~~a~~~l~~la-~~~~~~~l--~~~i~~l~~~l~~----~~~~~~~~~~~~~~a~~~L   78 (461)
                      +|.+.-+.+++.+.++.+ ..+......+..|+ +...-.-+  .+.+++|+.+-.-    ++.+...|-.+...+..+|
T Consensus        42 ~r~eL~e~i~~Vle~~~p~t~~v~~LetvrILSRdk~~L~~~~~~q~~~~ll~~A~ls~~e~sl~~v~d~~vi~EslKCL  121 (532)
T KOG4464|consen   42 DRKELGERIFEVLENGEPLTHRVVCLETVRILSRDKDGLEPLTNDQLCQKLLALAELSSNENSLPTVADMHVIMESLKCL  121 (532)
T ss_pred             hHHHHHHHHHHHHhcCCCchhhhhHHHHHHHHhccccccccccchHHHHHHHHHHHhccccCCCCcccchHHHHHHHHHH
Confidence            488888999999998874 44555666666677 33222211  2245555544321    1223334445777799999


Q ss_pred             HHHHhcCCchhHHHHHhcCCHHHHHhcCCC-----CCHHHHHHHHHHHHHHhccChhhH-HHHHHcCCHHHHHHHhcCC-
Q 044999           79 KQIASQADGALATEIGQSGVINSVLRLFPQ-----SDDSFRTVLVKCLRVFVTFGNENR-VIVARNGGLEIVIDLLNSC-  151 (461)
Q Consensus        79 ~~l~~~~~~~~~~~~~~~~~l~~L~~ll~~-----~~~~~~~~~~~~l~~l~~~~~~~~-~~~~~~g~i~~L~~ll~~~-  151 (461)
                      +|+... +...+....+......+.+.+..     ...++...-.+.+.-+..-....| ..+.+.+|++.+.+.+++. 
T Consensus       122 cNlvf~-Sq~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale~~~Rsql~~~l~Gl~~lt~~led~l  200 (532)
T KOG4464|consen  122 CNLVFH-SQRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALETDHRSQLIAELLGLELLTNWLEDKL  200 (532)
T ss_pred             HHHHhc-cHHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhhHHHHHHHHHHhcccHHHHHHhhccc
Confidence            999986 66788888887766666654321     112233344444443333233444 5567889999999988642 


Q ss_pred             --------C------hHHHHHHHHHHHHhhCCh--HHH-HHHHh----cCCHHHHHHHHcCC--CHHHHHHHHHHHHHh-
Q 044999          152 --------N------DGTRRYLLEILSALALLR--EVR-RVLIC----LGGLRYLVEAVSFG--SMVSRERACQAIGLL-  207 (461)
Q Consensus       152 --------~------~~~~~~a~~~L~~l~~~~--~~~-~~~~~----~~~l~~l~~~l~~~--~~~~~~~a~~~L~~l-  207 (461)
                              .      .+....++.++.|+..+.  ... ..-..    .+....++..+...  +.++...+..-+.|. 
T Consensus       201 gidse~n~~~l~pqe~n~a~EaLK~~FNvt~~~~k~~ke~~~~~~r~l~~llr~cl~~vT~~~~~~elhshav~~L~nv~  280 (532)
T KOG4464|consen  201 GIDSEINVPPLNPQETNRACEALKVFFNVTCDSDKDVKEEHAIQARHLTILLRHCLLIVTLRDSTEELHSHAVNLLDNVP  280 (532)
T ss_pred             cCCCCcCCCCCCHHHHHHHHHHHHHHhheeeccccccchhhHHHHHHHHHHHHHHHhhccccchHHHHhhccCCccCCch
Confidence                    1      144566777778877322  111 11011    11122222222211  223333322222221 


Q ss_pred             -------hcCc--hh-HHHHHh--cCChHHHHHhccc---------CCHHHHHHHHHHHHHHhcCccchhhhhhcCCHHH
Q 044999          208 -------AVTG--RA-RRLLVE--LGVIPGLVELFHI---------GDWTTKLVAGNTLGVVAAHVEYITPVAEAGAIPL  266 (461)
Q Consensus       208 -------~~~~--~~-~~~~~~--~~~i~~L~~ll~~---------~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~  266 (461)
                             +...  ++ .+.+..  -.....+..+|..         ...+...-.+.+|..++.....-..+.+..++|.
T Consensus       281 ~k~~~~~~~~~p~E~~sq~f~~~n~~~mdVi~~lLn~~~~qq~~~ss~~EllsPvlsVL~~car~~R~~Rkylr~qVLPP  360 (532)
T KOG4464|consen  281 EKCLDVLAGAKPHECCSQCFEKRNGRNMDVILRLLNFSEKQQEKESSLHELLSPVLSVLTECARSHRVMRKYLRQQVLPP  360 (532)
T ss_pred             hhhhhcccCCCCcchHHHHHHHhcchhHHHHHHHHHhhHHHHhhhhhhhhhhhhHHHHHHHHHhhhHHHHHHHHHhcCCc
Confidence                   1111  11 111111  1112222223321         1122333445555555555444444555556666


Q ss_pred             HHHHhCCCChhHHHHHHHHHHHhccCcccHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhCC
Q 044999          267 YAELLQGPDSTGKEISEDVFCILAVSEANANAIAEHLVRILREGDNEANAAAADVLWDLAGY  328 (461)
Q Consensus       267 L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~l~~ll~~~~~~~~~~a~~~L~~l~~~  328 (461)
                      |.+.-+.                   |+.-..+...+++++...+..++..|+..|..||..
T Consensus       361 LrDV~~R-------------------PEvg~tLRnkl~Rlmtl~~~~~K~vaAEfLFvLCKe  403 (532)
T KOG4464|consen  361 LRDVSQR-------------------PEVGQTLRNKLVRLMTLPDSSVKDVAAEFLFVLCKE  403 (532)
T ss_pred             hhhhhcC-------------------cchhHHHHHhhHhheeccchhhhhhhHHHHHHHhhc
Confidence            6644332                   222223335777778778888888999999999763

>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []

Probab=93.68  E-value=5.9  Score=36.75  Aligned_cols=164  Identities=14%  Similarity=0.154  Sum_probs=113.9

Q ss_pred             HHhHHHHHHHhhcCCHHHHHHHHHHHHhhcC--C-Cc-hhHHHh---hHHHHHHhhccCCCCCCCc-------HHHHHHH
Q 044999            9 EEAFNRFEQAVVSGSEALQVKALTKLARVSK--F-AP-QDILAA---TIPILARLLGENNFSGNLT-------RSIQQAA   74 (461)
Q Consensus         9 ~~~~~~l~~ll~~~~~~~~~~a~~~l~~la~--~-~~-~~~l~~---~i~~l~~~l~~~~~~~~~~-------~~~~~~a   74 (461)
                      .+.++.+...+++........+.+.+..+..  . .. ++.+..   ..+.+-+++...-...+++       ++++...
T Consensus        55 ~~~~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~f  134 (330)
T PF11707_consen   55 QNHLKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNF  134 (330)
T ss_pred             HHHHHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHH
Confidence            3447788888888888888889999988882  2 22 333333   5556666654311001110       1567778


Q ss_pred             HHHHHHHHhcCCchhHHHHH-hcCCHHHHHhcCCCCCHHHHHHHHHHHH-HHhccC---hhhHHHHHHcCCHHHHHHHhc
Q 044999           75 AYCLKQIASQADGALATEIG-QSGVINSVLRLFPQSDDSFRTVLVKCLR-VFVTFG---NENRVIVARNGGLEIVIDLLN  149 (461)
Q Consensus        75 ~~~L~~l~~~~~~~~~~~~~-~~~~l~~L~~ll~~~~~~~~~~~~~~l~-~l~~~~---~~~~~~~~~~g~i~~L~~ll~  149 (461)
                      +..+..+...++...+..+. ..+.+..+.+.|..+++++.......+. ++..+.   ...+..+.....+..|..+..
T Consensus       135 I~F~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~~Ly~  214 (330)
T PF11707_consen  135 IRFWLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQLASLYS  214 (330)
T ss_pred             HHHHHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHHHHHHhc
Confidence            88888888776776666665 4567888999999988888888888888 344332   344566667778888999888


Q ss_pred             CCCh----HHHHHHHHHHHHhhCChHH
Q 044999          150 SCND----GTRRYLLEILSALALLREV  172 (461)
Q Consensus       150 ~~~~----~~~~~a~~~L~~l~~~~~~  172 (461)
                      ..++    .++..+-..|..+|.++..
T Consensus       215 ~~~~~~~~~~~~~vh~fL~~lcT~p~~  241 (330)
T PF11707_consen  215 RDGEDEKSSVADLVHEFLLALCTDPKH  241 (330)
T ss_pred             ccCCcccchHHHHHHHHHHHHhcCCCc
Confidence            8777    8999999999999866544

The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.

>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []

Probab=93.64  E-value=1.3  Score=37.24  Aligned_cols=108  Identities=15%  Similarity=0.130  Sum_probs=74.1

Q ss_pred             HHHHHhcCCCCCHHHHHHHHHHHH-HHhccChhhHHHHHHcCCHHHHHHHhcC---------CChHHHHHHHHHHHHhhC
Q 044999           99 INSVLRLFPQSDDSFRTVLVKCLR-VFVTFGNENRVIVARNGGLEIVIDLLNS---------CNDGTRRYLLEILSALAL  168 (461)
Q Consensus        99 l~~L~~ll~~~~~~~~~~~~~~l~-~l~~~~~~~~~~~~~~g~i~~L~~ll~~---------~~~~~~~~a~~~L~~l~~  168 (461)
                      ...+++.+++.....  .....+. .|-..+..--..|.+.||+..|+++|..         .+......++.++..+..
T Consensus        68 p~~~i~~L~~~~~~~--~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n  145 (187)
T PF06371_consen   68 PEWYIKKLKSRPSTS--KILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMN  145 (187)
T ss_dssp             HHHHHHHHTTT--HH--HHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHccCccH--HHHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHc
Confidence            445566665554432  2233333 3333333445677788999999998743         234778889999999998


Q ss_pred             ChHHHHHHHh-cCCHHHHHHHHcCCCHHHHHHHHHHHHHhh
Q 044999          169 LREVRRVLIC-LGGLRYLVEAVSFGSMVSRERACQAIGLLA  208 (461)
Q Consensus       169 ~~~~~~~~~~-~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~  208 (461)
                      +......++. .+++..++..+.+++..++..++.+|..++
T Consensus       146 ~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~lc  186 (187)
T PF06371_consen  146 TKYGLEAVLSHPDSVNLIALSLDSPNIKTRKLALEILAALC  186 (187)
T ss_dssp             SHHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence            8887777776 679999999999999999999999998875

Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.

>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]

Probab=93.60  E-value=6.2  Score=36.72  Aligned_cols=270  Identities=16%  Similarity=0.157  Sum_probs=144.5

Q ss_pred             HHHHHhcCCCh-HHHHHHHHHHHHhhCChHHHHHHHhcCCHHHHHHHHc----------CCCHHHHHHHHHHHHHhhcCc
Q 044999          143 IVIDLLNSCND-GTRRYLLEILSALALLREVRRVLICLGGLRYLVEAVS----------FGSMVSRERACQAIGLLAVTG  211 (461)
Q Consensus       143 ~L~~ll~~~~~-~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~~l~----------~~~~~~~~~a~~~L~~l~~~~  211 (461)
                      .+++.+.++.+ ..+...+.++.-++.+...-.-+....-++.++.+-.          ..+.++...++.||+|+..+.
T Consensus        49 ~i~~Vle~~~p~t~~v~~LetvrILSRdk~~L~~~~~~q~~~~ll~~A~ls~~e~sl~~v~d~~vi~EslKCLcNlvf~S  128 (532)
T KOG4464|consen   49 RIFEVLENGEPLTHRVVCLETVRILSRDKDGLEPLTNDQLCQKLLALAELSSNENSLPTVADMHVIMESLKCLCNLVFHS  128 (532)
T ss_pred             HHHHHHhcCCCchhhhhHHHHHHHHhccccccccccchHHHHHHHHHHHhccccCCCCcccchHHHHHHHHHHHHHHhcc
Confidence            46777777664 5556677777777765554444433333444444432          114578899999999999998


Q ss_pred             hh-HHHHHhcCChHHHHHhcccC-----CHHHHHHHHHHHHHHhcC-ccchhhh-hhcCCHHHHHHHhCCC---Ch----
Q 044999          212 RA-RRLLVELGVIPGLVELFHIG-----DWTTKLVAGNTLGVVAAH-VEYITPV-AEAGAIPLYAELLQGP---DS----  276 (461)
Q Consensus       212 ~~-~~~~~~~~~i~~L~~ll~~~-----~~~~~~~a~~~L~~l~~~-~~~~~~~-~~~g~i~~L~~ll~~~---~~----  276 (461)
                      +. +..+.+......+.+.+...     ..++...=++.|.-++.. .+.|.++ .+.++++.+.+++.+.   ++    
T Consensus       129 q~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale~~~Rsql~~~l~Gl~~lt~~led~lgidse~n~  208 (532)
T KOG4464|consen  129 QRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALETDHRSQLIAELLGLELLTNWLEDKLGIDSEINV  208 (532)
T ss_pred             HHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhhHHHHHHHHHHhcccHHHHHHhhccccCCCCcCC
Confidence            87 77777776666666655421     112233333444444443 4555444 4558899999988653   22    


Q ss_pred             -----hH---HHHHHHHHHHhccCccc--H--HHHH--------HHHHHHhccC--CHHHHHHHHHHHHH--------hh
Q 044999          277 -----TG---KEISEDVFCILAVSEAN--A--NAIA--------EHLVRILREG--DNEANAAAADVLWD--------LA  326 (461)
Q Consensus       277 -----~~---~~~a~~~L~~l~~~~~~--~--~~i~--------~~l~~ll~~~--~~~~~~~a~~~L~~--------l~  326 (461)
                           +-   .-.++.++.|+..+...  .  ..+.        ..++-.+...  ..++-..+...|.|        ++
T Consensus       209 ~~l~pqe~n~a~EaLK~~FNvt~~~~k~~ke~~~~~~r~l~~llr~cl~~vT~~~~~~elhshav~~L~nv~~k~~~~~~  288 (532)
T KOG4464|consen  209 PPLNPQETNRACEALKVFFNVTCDSDKDVKEEHAIQARHLTILLRHCLLIVTLRDSTEELHSHAVNLLDNVPEKCLDVLA  288 (532)
T ss_pred             CCCCHHHHHHHHHHHHHHhheeeccccccchhhHHHHHHHHHHHHHHHhhccccchHHHHhhccCCccCCchhhhhhccc
Confidence                 22   22345566676543321  1  0111        2222222111  22222222222221        12


Q ss_pred             CC--CCchhH-H--hhcCCHHHHHHhhcCCC---------HHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhc---
Q 044999          327 GY--KHSVPV-I--RNSGAIPILVNLLRGEN---------DEVREKVSGAIAQLSYNEADRVALADAGAVPIMIELL---  389 (461)
Q Consensus       327 ~~--~~~~~~-l--~~~g~i~~L~~ll~~~~---------~~v~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll---  389 (461)
                      ..  .++... +  ..-.-+..+..+|....         .+.......+|..++++..+-..+.+..++|+|.+.-   
T Consensus       289 ~~~p~E~~sq~f~~~n~~~mdVi~~lLn~~~~qq~~~ss~~EllsPvlsVL~~car~~R~~Rkylr~qVLPPLrDV~~RP  368 (532)
T KOG4464|consen  289 GAKPHECCSQCFEKRNGRNMDVILRLLNFSEKQQEKESSLHELLSPVLSVLTECARSHRVMRKYLRQQVLPPLRDVSQRP  368 (532)
T ss_pred             CCCCcchHHHHHHHhcchhHHHHHHHHHhhHHHHhhhhhhhhhhhhHHHHHHHHHhhhHHHHHHHHHhcCCchhhhhcCc
Confidence            11  122111 1  22223555666654321         2244456778888888666666666666888776543   


Q ss_pred             --------------cCCCHHHHHHHHHHHHHhcCCCc
Q 044999          390 --------------HDESEELRDNAAESLINFSEDPL  412 (461)
Q Consensus       390 --------------~~~~~~~~~~a~~~L~~l~~~~~  412 (461)
                                    ...+..++.-|+..|.-|+..+-
T Consensus       369 Evg~tLRnkl~Rlmtl~~~~~K~vaAEfLFvLCKesV  405 (532)
T KOG4464|consen  369 EVGQTLRNKLVRLMTLPDSSVKDVAAEFLFVLCKESV  405 (532)
T ss_pred             chhHHHHHhhHhheeccchhhhhhhHHHHHHHhhcch
Confidence                          33456677777888887776653

>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []

Probab=93.37  E-value=1.4  Score=37.03  Aligned_cols=80  Identities=15%  Similarity=0.108  Sum_probs=63.4

Q ss_pred             hHHHHHHHhcCCHHHHHHHHcC---------CCHHHHHHHHHHHHHhhcCchhHHH-HHhcCChHHHHHhcccCCHHHHH
Q 044999          170 REVRRVLICLGGLRYLVEAVSF---------GSMVSRERACQAIGLLAVTGRARRL-LVELGVIPGLVELFHIGDWTTKL  239 (461)
Q Consensus       170 ~~~~~~~~~~~~l~~l~~~l~~---------~~~~~~~~a~~~L~~l~~~~~~~~~-~~~~~~i~~L~~ll~~~~~~~~~  239 (461)
                      ......|++.||+..|+.+|..         .+......+++|+..+..+...... +...+++..+...+.+++..++.
T Consensus        97 ~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~  176 (187)
T PF06371_consen   97 ISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMNTKYGLEAVLSHPDSVNLIALSLDSPNIKTRK  176 (187)
T ss_dssp             HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTSSHHHHHHHHCSSSHHHHHHHT--TTSHHHHH
T ss_pred             chHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHccHHHHHHHHcCcHHHHHHHHHHCCCCHHHHH
Confidence            3456788888999999988853         2457888999999999998887444 44588999999999999999999


Q ss_pred             HHHHHHHHHh
Q 044999          240 VAGNTLGVVA  249 (461)
Q Consensus       240 ~a~~~L~~l~  249 (461)
                      .++..|..+|
T Consensus       177 ~~leiL~~lc  186 (187)
T PF06371_consen  177 LALEILAALC  186 (187)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999998876

Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.

>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]

Probab=93.07  E-value=4  Score=42.31  Aligned_cols=183  Identities=13%  Similarity=0.132  Sum_probs=120.8

Q ss_pred             ChHHHHHhcccCCHHHHHHHHHHHHHHhcCccchhhhhhcCCHHHHHHH-hCCCChhHHHHHHHHHHHhccC--cccHHH
Q 044999          222 VIPGLVELFHIGDWTTKLVAGNTLGVVAAHVEYITPVAEAGAIPLYAEL-LQGPDSTGKEISEDVFCILAVS--EANANA  298 (461)
Q Consensus       222 ~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~l-l~~~~~~~~~~a~~~L~~l~~~--~~~~~~  298 (461)
                      ..+.+..-+.+.++.-+..|+..+......+.....-...|.+-.++.. +.+.+..+...++.+|..++..  ...+..
T Consensus       254 i~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~  333 (815)
T KOG1820|consen  254 ITKNLETEMLSKKWKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKY  333 (815)
T ss_pred             cChHHHHhhhccchHHHHHHHHHHHHHHhccccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHH
Confidence            4455555666788888888888877776654311111112333334443 3455777888888888887532  222222


Q ss_pred             HH---HHHHHHhccCCHHHHHHHHHHHHHhhCCCCchhHHhhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcC-Ch-hhH
Q 044999          299 IA---EHLVRILREGDNEANAAAADVLWDLAGYKHSVPVIRNSGAIPILVNLLRGENDEVREKVSGAIAQLSY-NE-ADR  373 (461)
Q Consensus       299 i~---~~l~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~-~~-~~~  373 (461)
                      ..   +.+++-+....+.++..+..++-.++..      .......+.+...+.+++|.++......+..... .. ...
T Consensus       334 ~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns------~~l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~  407 (815)
T KOG1820|consen  334 AKNVFPSLLDRLKEKKSELRDALLKALDAILNS------TPLSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKTV  407 (815)
T ss_pred             HHhhcchHHHHhhhccHHHHHHHHHHHHHHHhc------ccHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCc
Confidence            22   8899999888888888777777766541      1123456778889999999999987766666665 22 333


Q ss_pred             HHHHhCCChHHHHHhccCCCHHHHHHHHHHHHHhcCC
Q 044999          374 VALADAGAVPIMIELLHDESEELRDNAAESLINFSED  410 (461)
Q Consensus       374 ~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~  410 (461)
                      ..-.-.+.+|.++....+.+.++|..|..++..+...
T Consensus       408 ~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~  444 (815)
T KOG1820|consen  408 EKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKV  444 (815)
T ss_pred             chhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHH
Confidence            3333445788899999999999999999988766533

>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]

Probab=93.02  E-value=6.6  Score=40.79  Aligned_cols=180  Identities=12%  Similarity=0.134  Sum_probs=121.0

Q ss_pred             HHHHHcCCCHHHHHHHHHHHHHhhcCchhHHHH-HhcCChHHHHHhcc-cCCHHHHHHHHHHHHHHhcC--ccchhhhhh
Q 044999          185 LVEAVSFGSMVSRERACQAIGLLAVTGRARRLL-VELGVIPGLVELFH-IGDWTTKLVAGNTLGVVAAH--VEYITPVAE  260 (461)
Q Consensus       185 l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~-~~~~~i~~L~~ll~-~~~~~~~~~a~~~L~~l~~~--~~~~~~~~~  260 (461)
                      +-.-+.+.++.-|..|+..+........ .... ...|.+..++.... +.+..+...++.+|..++..  ...+.  ..
T Consensus       258 l~t~~~s~~WK~R~Eale~l~~~l~e~~-~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~--~~  334 (815)
T KOG1820|consen  258 LETEMLSKKWKDRKEALEELVAILEEAK-KEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRK--YA  334 (815)
T ss_pred             HHHhhhccchHHHHHHHHHHHHHHhccc-cccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHH--HH
Confidence            3334456678888899888887766665 1111 11223333333333 56777888888888888875  22222  22


Q ss_pred             cCCHHHHHHHhCCCChhHHHHHHHHHHHhccCcccHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhC-CC-CchhHHhhc
Q 044999          261 AGAIPLYAELLQGPDSTGKEISEDVFCILAVSEANANAIAEHLVRILREGDNEANAAAADVLWDLAG-YK-HSVPVIRNS  338 (461)
Q Consensus       261 ~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~l~~ll~~~~~~~~~~a~~~L~~l~~-~~-~~~~~l~~~  338 (461)
                      .+..+.+++-+....+.++..+..++-.... ...-..+.+.+...+++++|..+..+...+..... .+ .....-.-.
T Consensus       335 ~~v~p~lld~lkekk~~l~d~l~~~~d~~~n-s~~l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~~~~t~~  413 (815)
T KOG1820|consen  335 KNVFPSLLDRLKEKKSELRDALLKALDAILN-STPLSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKTVEKETVK  413 (815)
T ss_pred             HhhcchHHHHhhhccHHHHHHHHHHHHHHHh-cccHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCcchhhHH
Confidence            3567889999988888888877777665544 12223344889999999999999987777766653 22 333333345


Q ss_pred             CCHHHHHHhhcCCCHHHHHHHHHHHHHhcC
Q 044999          339 GAIPILVNLLRGENDEVREKVSGAIAQLSY  368 (461)
Q Consensus       339 g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~  368 (461)
                      +.++.++....+.+.+||..+..++..+..
T Consensus       414 ~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k  443 (815)
T KOG1820|consen  414 TLVPHLIKHINDTDKDVRKAALEAVAAVMK  443 (815)
T ss_pred             HHhHHHhhhccCCcHHHHHHHHHHHHHHHH
Confidence            678889999999999999999988887776

>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]

Probab=92.81  E-value=18  Score=39.75  Aligned_cols=147  Identities=15%  Similarity=0.044  Sum_probs=87.2

Q ss_pred             cCChHHHHHhcccCCHHHHHHHHHHHHHHhcCccchhhhhhcCCHHHHHHHhCCCChhHHHHHHHHHHHh-ccCcccHHH
Q 044999          220 LGVIPGLVELFHIGDWTTKLVAGNTLGVVAAHVEYITPVAEAGAIPLYAELLQGPDSTGKEISEDVFCIL-AVSEANANA  298 (461)
Q Consensus       220 ~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l-~~~~~~~~~  298 (461)
                      .+++|.|..-|.+++...|..|...++.+...+...-.=-........+.-+.+.+.++|..++....+. ..+++....
T Consensus       258 ~~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~~l~~~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~~~~~~~~~  337 (1266)
T KOG1525|consen  258 LAVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKDSQLSETYDDLWSAFLGRFNDISVEVRMECVESIKQCLLNNPSIAKA  337 (1266)
T ss_pred             HHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcchhhhcccchHHHHHHHHHhccCChhhhhhHHHHhHHHHhcCchhhhH
Confidence            4688999999999999999999999999887644433200113345566667777889998888877665 334443333


Q ss_pred             HHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCchhHHhhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcC
Q 044999          299 IAEHLVRILREGDNEANAAAADVLWDLAGYKHSVPVIRNSGAIPILVNLLRGENDEVREKVSGAIAQLSY  368 (461)
Q Consensus       299 i~~~l~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~  368 (461)
                      ....+.--.++.++.++.....++.... .......+... .+..+.+.+.+....||..|..-|..+..
T Consensus       338 ~~~~~~l~~~~~D~~~rir~~v~i~~~~-v~~~~l~~~~~-ll~~~~eR~rDKk~~VR~~Am~~LaqlYk  405 (1266)
T KOG1525|consen  338 STILLALRERDLDEDVRVRTQVVIVACD-VMKFKLVYIPL-LLKLVAERLRDKKIKVRKQAMNGLAQLYK  405 (1266)
T ss_pred             HHHHHHHHhhcCChhhhheeeEEEEEee-hhHhhhhhhHH-HHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence            3222222223444444432221111111 11111122222 55566677778889999999887776654

>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]

Probab=92.27  E-value=5.1  Score=39.97  Aligned_cols=218  Identities=14%  Similarity=0.086  Sum_probs=126.3

Q ss_pred             HHHHHHHHcC----CCHHHHHHHHHHHHHhhc-CchhHHHHHhcCChHHHHHhcc-cCCHHHHHHHHHHHHHHhcC-ccc
Q 044999          182 LRYLVEAVSF----GSMVSRERACQAIGLLAV-TGRARRLLVELGVIPGLVELFH-IGDWTTKLVAGNTLGVVAAH-VEY  254 (461)
Q Consensus       182 l~~l~~~l~~----~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~~~i~~L~~ll~-~~~~~~~~~a~~~L~~l~~~-~~~  254 (461)
                      -|.+.+...+    .++.++..|.-+|..+.- +.+.+     ..-+|.++..+. +++|.+|..|+-.++-+... ...
T Consensus       894 ~pvVeE~csn~~~~sd~~lq~aA~l~L~klMClS~~fc-----~ehlpllIt~mek~p~P~IR~NaVvglgD~~vcfN~~  968 (1128)
T COG5098         894 KPVVEEGCSNSSRFSDEELQVAAYLSLYKLMCLSFEFC-----SEHLPLLITSMEKHPIPRIRANAVVGLGDFLVCFNTT  968 (1128)
T ss_pred             hHHHHHHhccccccCCHHHHHHHHHHHHHHHHHhHHHH-----HHHHHHHHHHHhhCCCcceeccceeeccccceehhhh
Confidence            3444444444    477888888777776532 22221     124788888887 78888888887777766543 111


Q ss_pred             hhhhhhcCCHHHHHHHhCCCChhHHHHHHHHHHHhccCcc--cHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCch
Q 044999          255 ITPVAEAGAIPLYAELLQGPDSTGKEISEDVFCILAVSEA--NANAIAEHLVRILREGDNEANAAAADVLWDLAGYKHSV  332 (461)
Q Consensus       255 ~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~--~~~~i~~~l~~ll~~~~~~~~~~a~~~L~~l~~~~~~~  332 (461)
                      ....     -..|..-+.+.+..+++.|..++.+|.....  .+-++ +.+..+|.+.+.++...|-..+..++..+.. 
T Consensus       969 ~de~-----t~yLyrrL~De~~~V~rtclmti~fLilagq~KVKGql-g~ma~~L~deda~Isdmar~fft~~a~KdNt- 1041 (1128)
T COG5098         969 ADEH-----THYLYRRLGDEDADVRRTCLMTIHFLILAGQLKVKGQL-GKMALLLTDEDAEISDMARHFFTQIAKKDNT- 1041 (1128)
T ss_pred             hHHH-----HHHHHHHhcchhhHHHHHHHHHHHHHHHccceeeccch-hhhHhhccCCcchHHHHHHHHHHHHHhcccc-
Confidence            1111     3456677778888999999988888743222  12111 6677778888888888888888888754222 


Q ss_pred             hHHhhcCCHHHHHHhhcC---CCHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhccCCCHHHHHHHHHHHHHhcC
Q 044999          333 PVIRNSGAIPILVNLLRG---ENDEVREKVSGAIAQLSYNEADRVALADAGAVPIMIELLHDESEELRDNAAESLINFSE  409 (461)
Q Consensus       333 ~~l~~~g~i~~L~~ll~~---~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~  409 (461)
                         +-.|++...-.+-++   +... -+...+.|..+...+.+++++.+    ....++.+.....-....+.++.||-.
T Consensus      1042 ---~yn~fidifs~ls~~ae~g~e~-fk~II~FLt~fI~kerh~kql~E----~L~~rl~rc~tq~qwd~~~~~l~nLp~ 1113 (1128)
T COG5098        1042 ---MYNGFIDIFSTLSSDAENGQEP-FKLIIGFLTDFISKERHQKQLKE----SLFLRLLRCNTQSQWDKLLCSLFNLPD 1113 (1128)
T ss_pred             ---hhhhhHHHHHHcCchhhcCCCc-HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhhhhhHHHHHHHHHHhcCCc
Confidence               233444444433321   1111 22344455555554555555544    334445555555555556667777766


Q ss_pred             CCcchHHHHH
Q 044999          410 DPLQHERISE  419 (461)
Q Consensus       410 ~~~~~~~l~~  419 (461)
                      ..++...+.+
T Consensus      1114 k~~~~~~Ll~ 1123 (1128)
T COG5098        1114 KIAGSGGLLN 1123 (1128)
T ss_pred             cccchhhHhh
Confidence            5555544443

>smart00638 LPD_N Lipoprotein N-terminal Domain

Probab=92.10  E-value=12  Score=37.78  Aligned_cols=126  Identities=18%  Similarity=0.205  Sum_probs=80.1

Q ss_pred             HHHHHHHhCCC----ChhHHHHHHHHHHHhc----cCcccH-----HHHHHHHHHHh----ccCCHHHHHHHHHHHHHhh
Q 044999          264 IPLYAELLQGP----DSTGKEISEDVFCILA----VSEANA-----NAIAEHLVRIL----REGDNEANAAAADVLWDLA  326 (461)
Q Consensus       264 i~~L~~ll~~~----~~~~~~~a~~~L~~l~----~~~~~~-----~~i~~~l~~ll----~~~~~~~~~~a~~~L~~l~  326 (461)
                      +..+..+++++    ++.++..+..+++++.    ...+.+     ..+.+.+.+.|    ...+.+.+..++.+|+|+.
T Consensus       395 l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g  474 (574)
T smart00638      395 LKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNAG  474 (574)
T ss_pred             HHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhccC
Confidence            67788888754    4567777777777663    222211     23335555444    3456666788889999885


Q ss_pred             CCCCchhHHhhcCCHHHHHHhhc---CCCHHHHHHHHHHHHHhcC-ChhhHHHHHhCCChHHHHHhcc--CCCHHHHHHH
Q 044999          327 GYKHSVPVIRNSGAIPILVNLLR---GENDEVREKVSGAIAQLSY-NEADRVALADAGAVPIMIELLH--DESEELRDNA  400 (461)
Q Consensus       327 ~~~~~~~~l~~~g~i~~L~~ll~---~~~~~v~~~a~~~L~~l~~-~~~~~~~~~~~~~i~~L~~ll~--~~~~~~~~~a  400 (461)
                      .          ...++.+..++.   ..+..+|..|+++|.+++. .+..        +-+.+..++.  ..++++|..|
T Consensus       475 ~----------~~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~--------v~~~l~~i~~n~~e~~EvRiaA  536 (574)
T smart00638      475 H----------PSSIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRK--------VQEVLLPIYLNRAEPPEVRMAA  536 (574)
T ss_pred             C----------hhHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchH--------HHHHHHHHHcCCCCChHHHHHH
Confidence            3          234555666655   2346799999999999986 4431        2345566553  4688999888


Q ss_pred             HHHHHHh
Q 044999          401 AESLINF  407 (461)
Q Consensus       401 ~~~L~~l  407 (461)
                      ..+|...
T Consensus       537 ~~~lm~t  543 (574)
T smart00638      537 VLVLMET  543 (574)
T ss_pred             HHHHHhc
Confidence            8777544

>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II

Probab=91.81  E-value=9  Score=34.11  Aligned_cols=212  Identities=14%  Similarity=0.081  Sum_probs=120.2

Q ss_pred             HHHHhcCCChHHHHHHHHHHHHhhC-ChHHHHHHHhcCCHHHHHHHHcCC--CHHHHHHHHHHHHHhhcCchh-HHHHHh
Q 044999          144 VIDLLNSCNDGTRRYLLEILSALAL-LREVRRVLICLGGLRYLVEAVSFG--SMVSRERACQAIGLLAVTGRA-RRLLVE  219 (461)
Q Consensus       144 L~~ll~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~~~l~~l~~~l~~~--~~~~~~~a~~~L~~l~~~~~~-~~~~~~  219 (461)
                      |-..|.+.++.+|..|+..|..+.. -+...   ....-+..+++++.+.  |......++..+..|...... ....  
T Consensus         4 Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~---L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~~~~~~~~--   78 (262)
T PF14500_consen    4 LGEYLTSEDPIIRAKALELLSEVLERLPPDF---LSRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMKNFSPESA--   78 (262)
T ss_pred             hhhhhCCCCHHHHHHHHHHHHHHHHhCCHhh---ccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCcCCChhhH--
Confidence            4556788899999999999988772 22211   2222255666666543  445555557777666644332 2111  


Q ss_pred             cCChHHHHHhcc--cCCHHHHHHHHHHHHHHhcCccchhhhh--hcCCHHHHHHHhCCC-ChhHHHHHHHHHHHhccCcc
Q 044999          220 LGVIPGLVELFH--IGDWTTKLVAGNTLGVVAAHVEYITPVA--EAGAIPLYAELLQGP-DSTGKEISEDVFCILAVSEA  294 (461)
Q Consensus       220 ~~~i~~L~~ll~--~~~~~~~~~a~~~L~~l~~~~~~~~~~~--~~g~i~~L~~ll~~~-~~~~~~~a~~~L~~l~~~~~  294 (461)
                      ...+..+.+-..  +-....|..+...+..+..+  .+..+.  ..+++..+++.+..+ ||.-...+...+..+...-+
T Consensus        79 ~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~--~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~  156 (262)
T PF14500_consen   79 VKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLEN--HREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFD  156 (262)
T ss_pred             HHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHH--hHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcc
Confidence            113333333222  33456777888888887765  222222  235678888888766 78776666666666543333


Q ss_pred             cHHHHHHHHHHHhcc----------CCH--HHHHHHHHHHH-HhhCCCCchhHHhhcCCHHHHHHhhcCCCHHHHHHHHH
Q 044999          295 NANAIAEHLVRILRE----------GDN--EANAAAADVLW-DLAGYKHSVPVIRNSGAIPILVNLLRGENDEVREKVSG  361 (461)
Q Consensus       295 ~~~~i~~~l~~ll~~----------~~~--~~~~~a~~~L~-~l~~~~~~~~~l~~~g~i~~L~~ll~~~~~~v~~~a~~  361 (461)
                      . ....+.+.+.+..          ++|  -.++.-...|. .++..+..     ..-.+|.|++=|.+..+.++..++.
T Consensus       157 ~-~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~f-----a~~~~p~LleKL~s~~~~~K~D~L~  230 (262)
T PF14500_consen  157 I-SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPLF-----APFAFPLLLEKLDSTSPSVKLDSLQ  230 (262)
T ss_pred             c-chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHhh-----HHHHHHHHHHHHcCCCcHHHHHHHH
Confidence            2 2222333332211          122  12222223333 33333332     2346788999999999999999999


Q ss_pred             HHHHhcC
Q 044999          362 AIAQLSY  368 (461)
Q Consensus       362 ~L~~l~~  368 (461)
                      +|..++.
T Consensus       231 tL~~c~~  237 (262)
T PF14500_consen  231 TLKACIE  237 (262)
T ss_pred             HHHHHHH
Confidence            9988776

>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised

Probab=91.76  E-value=0.44  Score=40.74  Aligned_cols=82  Identities=20%  Similarity=0.238  Sum_probs=63.8

Q ss_pred             HHHHHHHHHHHHhhCChHHHHHHHhcC-------CHHHHHHHHcCC-CHHHHHHHHHHHHHhhcCchh-H-HHHHhcCCh
Q 044999          154 GTRRYLLEILSALALLREVRRVLICLG-------GLRYLVEAVSFG-SMVSRERACQAIGLLAVTGRA-R-RLLVELGVI  223 (461)
Q Consensus       154 ~~~~~a~~~L~~l~~~~~~~~~~~~~~-------~l~~l~~~l~~~-~~~~~~~a~~~L~~l~~~~~~-~-~~~~~~~~i  223 (461)
                      .-|..|+++|++++..+.+...+...+       .+..|++++... +.-.|+.|+-.|.+|+..+.. . ..-.+.+.+
T Consensus       139 SPqrlaLEaLcKLsV~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~i  218 (257)
T PF12031_consen  139 SPQRLALEALCKLSVIENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPCI  218 (257)
T ss_pred             CHHHHHHHHHHHhheeccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhchH
Confidence            578999999999998777777776665       344556666544 778999999999999998887 3 444568899


Q ss_pred             HHHHHhcccCCH
Q 044999          224 PGLVELFHIGDW  235 (461)
Q Consensus       224 ~~L~~ll~~~~~  235 (461)
                      ..|+..+.+...
T Consensus       219 ~~Li~FiE~a~~  230 (257)
T PF12031_consen  219 SHLIAFIEDAEQ  230 (257)
T ss_pred             HHHHHHHHHHHH
Confidence            999999876543

This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.

>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=91.64  E-value=18  Score=37.13  Aligned_cols=195  Identities=13%  Similarity=0.123  Sum_probs=99.4

Q ss_pred             HHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHhcCCCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhcCC
Q 044999           72 QAAAYCLKQIASQADGALATEIGQSGVINSVLRLFPQSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLNSC  151 (461)
Q Consensus        72 ~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~  151 (461)
                      ..|...|..++.  -......+...+++..+.+..--++-..+               +.-..+.+.+.++.+-+-++.+
T Consensus       311 s~Al~FLt~V~~--r~~y~~~F~~~~vl~~i~e~VvlpN~~lR---------------~eDeElFED~pleYiRRDlEGs  373 (960)
T KOG1992|consen  311 SKALQFLTSVSR--RPHYAELFEGENVLAQICEKVVLPNLILR---------------EEDEELFEDNPLEYIRRDLEGS  373 (960)
T ss_pred             HHHHHHHHHHHh--hhhhHhhhcchHHHHHHHHhhcccccccc---------------hhhHHHhccCHHHHHHHhcccC
Confidence            347778888777  44444444444455544443333322211               1123444555666777777777


Q ss_pred             ChHH-HHHHHHHHHHhhCChHHHHHHHhcCCHHHHHHHH-cCC--CHHHHHHHHHHHHHhhcCchh-HHHHHhc----CC
Q 044999          152 NDGT-RRYLLEILSALALLREVRRVLICLGGLRYLVEAV-SFG--SMVSRERACQAIGLLAVTGRA-RRLLVEL----GV  222 (461)
Q Consensus       152 ~~~~-~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~~l-~~~--~~~~~~~a~~~L~~l~~~~~~-~~~~~~~----~~  222 (461)
                      |.+. |+.|+..+..++.+-+....-+-.+-+..++.-. .++  ++.-+..+...+..++..... +.-+...    +.
T Consensus       374 DvdTRRR~a~dlvrgL~~~fe~~vt~v~~~~v~~~l~~y~~nPS~nWk~kd~aiyL~talaik~~t~~~Gvtstn~lvdv  453 (960)
T KOG1992|consen  374 DVDTRRRAAIDLVRGLCKNFEGQVTGVFSSEVQRLLDQYSKNPSGNWKKKDRAIYLVTALAIKGQTAKHGVTSTNELVDV  453 (960)
T ss_pred             CcchhHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhccCCCccccccchhhhhhHHHHhhcchhhcceeeccccccH
Confidence            7655 4667788888885444433222222344444432 233  555566777777777665443 2211111    11


Q ss_pred             hHHHH-----Hhcc---cCCHHHHHHHHHHHHHHhcCccchhhhhh---cCCHHHHHHHhCCCChhHHHHHHHHHHHh
Q 044999          223 IPGLV-----ELFH---IGDWTTKLVAGNTLGVVAAHVEYITPVAE---AGAIPLYAELLQGPDSTGKEISEDVFCIL  289 (461)
Q Consensus       223 i~~L~-----~ll~---~~~~~~~~~a~~~L~~l~~~~~~~~~~~~---~g~i~~L~~ll~~~~~~~~~~a~~~L~~l  289 (461)
                      +..+.     ++.+   .+.+-++..   ++..+.   -.|..+..   ...+|.++..+..+...+...|+.++..+
T Consensus       454 ~~Ff~~~ilp~L~s~~vn~~pilka~---aIKy~~---~FR~ql~~~~lm~~~p~li~~L~a~s~vvhsYAA~aiEki  525 (960)
T KOG1992|consen  454 VDFFANQILPDLLSPNVNEFPILKAD---AIKYIY---TFRNQLGKEHLMALLPRLIRFLEAESRVVHSYAAIAIEKL  525 (960)
T ss_pred             HHHHHHHhhHHhccCccccccchhhc---ccceee---eecccCChHHHHHHHHHHHHhccCcchHHHHHHHHHHHhc
Confidence            11111     1112   122222222   222211   12222222   24578899999999999999999988876

>KOG2137 consensus Protein kinase [Signal transduction mechanisms]

Probab=91.64  E-value=2.6  Score=42.09  Aligned_cols=130  Identities=15%  Similarity=0.117  Sum_probs=96.8

Q ss_pred             cCChHHHHHhcccCCHHHHHHHHHHHHHHhcCccchhhhhhcCCHHHHHHHh-CCCChhHHHHHHHHHHHhccCcccHHH
Q 044999          220 LGVIPGLVELFHIGDWTTKLVAGNTLGVVAAHVEYITPVAEAGAIPLYAELL-QGPDSTGKEISEDVFCILAVSEANANA  298 (461)
Q Consensus       220 ~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~ll-~~~~~~~~~~a~~~L~~l~~~~~~~~~  298 (461)
                      ..+++.|..-+++.+..+|+.++..+..++..-+  ...++.-++|.+..+. +..+..++.+++.++..+...-+ +..
T Consensus       388 ~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD--~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~lD-~~~  464 (700)
T KOG2137|consen  388 EKILPLLYRSLEDSDVQIQELALQILPTVAESID--VPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQRLD-KAA  464 (700)
T ss_pred             HHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhcc--HHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHHHHH-HHH
Confidence            4467888888889999999999999999887633  4455666688888773 45578899999999999883222 222


Q ss_pred             HH---HHHHHHhccCCHHHHHHHHHHHHHhhCCCCchhHHhhcCCHHHHHHhhcCCC
Q 044999          299 IA---EHLVRILREGDNEANAAAADVLWDLAGYKHSVPVIRNSGAIPILVNLLRGEN  352 (461)
Q Consensus       299 i~---~~l~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~ll~~~~  352 (461)
                      +.   ..+.+..+..+|.+......+..++.........+..+.++|.++.+...+.
T Consensus       465 v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~~g~ev~~~~VlPlli~ls~~~~  521 (700)
T KOG2137|consen  465 VLDELLPILKCIKTRDPAIVMGFLRIYEALALIIYSGVEVMAENVLPLLIPLSVAPS  521 (700)
T ss_pred             hHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcccceeeehhhhhhhhhhhhhccc
Confidence            22   6677777888999999999988888855444344555679999998887665

>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]

Probab=91.48  E-value=3.5  Score=40.19  Aligned_cols=123  Identities=13%  Similarity=0.035  Sum_probs=82.8

Q ss_pred             HhccChhhHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHhhCChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHH
Q 044999          124 FVTFGNENRVIVARNGGLEIVIDLLNSCNDGTRRYLLEILSALALLREVRRVLICLGGLRYLVEAVSFGSMVSRERACQA  203 (461)
Q Consensus       124 l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~  203 (461)
                      .-..++++ ..++ .|.+..++..+.+++..+|...+.+|+.++..-......+..|.+..+.+-+-+..+.+|..|..+
T Consensus        78 ~~~~dpeg-~~~V-~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~  155 (885)
T COG5218          78 DMPDDPEG-EELV-AGTFYHLLRGTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREKAVRREAVKV  155 (885)
T ss_pred             cCCCChhh-hHHH-HHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence            33355554 2222 346777888888999999999999999998655555555666777777777777788999999999


Q ss_pred             HHHhhcCchhHHHHHhcCChHHHHHhcc-cCCHHHHHHHHHHHHHHhcCccch
Q 044999          204 IGLLAVTGRARRLLVELGVIPGLVELFH-IGDWTTKLVAGNTLGVVAAHVEYI  255 (461)
Q Consensus       204 L~~l~~~~~~~~~~~~~~~i~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~~~~  255 (461)
                      |+.+-....+.+..    ....|..+++ +++.+++..   ++.|+..++..+
T Consensus       156 L~~~Qe~~~neen~----~~n~l~~~vqnDPS~EVRr~---allni~vdnsT~  201 (885)
T COG5218         156 LCYYQEMELNEENR----IVNLLKDIVQNDPSDEVRRL---ALLNISVDNSTY  201 (885)
T ss_pred             HHHHHhccCChHHH----HHHHHHHHHhcCcHHHHHHH---HHHHeeeCCCcc
Confidence            99886554442221    2235566666 556677776   556665554433

>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised

Probab=91.23  E-value=16  Score=35.82  Aligned_cols=90  Identities=13%  Similarity=0.107  Sum_probs=52.8

Q ss_pred             HHHHHHHHHHHHhhCCCCchhHHhhcCCHHHHHHhhcC------CCHHHHHHHHHHHHHhcCCh--hhHHHHHhCC--Ch
Q 044999          313 EANAAAADVLWDLAGYKHSVPVIRNSGAIPILVNLLRG------ENDEVREKVSGAIAQLSYNE--ADRVALADAG--AV  382 (461)
Q Consensus       313 ~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~ll~~------~~~~v~~~a~~~L~~l~~~~--~~~~~~~~~~--~i  382 (461)
                      +....+..++.||+..+-...      .+..|..+|.+      .+..+.+.|+..+..+....  .....+.-.-  .+
T Consensus       230 ~l~~~~w~~m~nL~~S~~g~~------~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~~vl  303 (464)
T PF11864_consen  230 SLCKPSWRTMRNLLKSHLGHS------AIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFSPSSVL  303 (464)
T ss_pred             ccchhHHHHHHHHHcCccHHH------HHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhccccCCcceecccHHHHH
Confidence            566677788888886543322      34557777732      23445667777777666622  1111111111  56


Q ss_pred             HHHHHhccCCCHHHHHHHHHHHHHhc
Q 044999          383 PIMIELLHDESEELRDNAAESLINFS  408 (461)
Q Consensus       383 ~~L~~ll~~~~~~~~~~a~~~L~~l~  408 (461)
                      +.+...++.+++.+-......+.++.
T Consensus       304 ~sl~~al~~~~~~v~~eIl~~i~~ll  329 (464)
T PF11864_consen  304 PSLLNALKSNSPRVDYEILLLINRLL  329 (464)
T ss_pred             HHHHHHHhCCCCeehHHHHHHHHHHH
Confidence            77777777776666666666666666

>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

Probab=91.20  E-value=16  Score=35.77  Aligned_cols=63  Identities=21%  Similarity=0.257  Sum_probs=31.9

Q ss_pred             CCHHHHHHh-hcCCCHHHHHHHHHHHHHhcC-ChhhHHHHHhCCChHHHHHhc-cCCCHHHHHHHHHHHHHhcCC
Q 044999          339 GAIPILVNL-LRGENDEVREKVSGAIAQLSY-NEADRVALADAGAVPIMIELL-HDESEELRDNAAESLINFSED  410 (461)
Q Consensus       339 g~i~~L~~l-l~~~~~~v~~~a~~~L~~l~~-~~~~~~~~~~~~~i~~L~~ll-~~~~~~~~~~a~~~L~~l~~~  410 (461)
                      |++..|+.+ .++.+++|++.|..+|+-+|. ++.         .++..++++ .+.++-+|...+.+|.--|..
T Consensus       551 ~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~~---------~lv~tvelLs~shN~hVR~g~AvaLGiacag  616 (926)
T COG5116         551 GVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDRD---------LLVGTVELLSESHNFHVRAGVAVALGIACAG  616 (926)
T ss_pred             hhHhhhheeecccCchHHHHHHHHheeeeEecCcc---------hhhHHHHHhhhccchhhhhhhHHHhhhhhcC
Confidence            444445555 445566666666666666555 322         234444444 334555555555555444433

>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes

Probab=91.08  E-value=2.1  Score=38.44  Aligned_cols=156  Identities=15%  Similarity=0.144  Sum_probs=96.0

Q ss_pred             HHHHHHHhCCCChhHHHHHHHHHHHhccCcccHHHHH-------HHHHHHhc----cCCHHHHHHHHHHHHHhhCCCCch
Q 044999          264 IPLYAELLQGPDSTGKEISEDVFCILAVSEANANAIA-------EHLVRILR----EGDNEANAAAADVLWDLAGYKHSV  332 (461)
Q Consensus       264 i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~i~-------~~l~~ll~----~~~~~~~~~a~~~L~~l~~~~~~~  332 (461)
                      ...+...+..-+++-+-.++..++-++.++.....+.       ..+..++.    +..+..+..++++++|+-.++..+
T Consensus        65 ~~~~~~~~~~Wp~~~~fP~lDLlRl~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~~~~~  144 (268)
T PF08324_consen   65 LILLLKILLSWPPESRFPALDLLRLAALHPPASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFSHPPGR  144 (268)
T ss_dssp             HHHHHHHHCCS-CCC-HHHHHHHHHHCCCHCHHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTSCCCH
T ss_pred             HHHHHHHHHhCCCccchhHHhHHHHHHhCccHHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCCCccH
Confidence            3445555555555666677777776666666544442       23333332    346788899999999999998888


Q ss_pred             hHHhhcC--CHHHHHHhhcCC----CHHHHHHHHHHHHHhcC-ChhhH-HHHHhCCChHHHHHhc-cC-CCHHHHHHHHH
Q 044999          333 PVIRNSG--AIPILVNLLRGE----NDEVREKVSGAIAQLSY-NEADR-VALADAGAVPIMIELL-HD-ESEELRDNAAE  402 (461)
Q Consensus       333 ~~l~~~g--~i~~L~~ll~~~----~~~v~~~a~~~L~~l~~-~~~~~-~~~~~~~~i~~L~~ll-~~-~~~~~~~~a~~  402 (461)
                      ..+..+.  .+...+..+...    +..++..++..+.|++. .-..+ ..=.....+..+++.+ .. .+++....++.
T Consensus       145 ~~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ll~~i~~~~~~~~~d~Ea~~R~Lv  224 (268)
T PF08324_consen  145 QLLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSELLSSIIEVLSREESDEEALYRLLV  224 (268)
T ss_dssp             HHHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHHHHHHHHHCHCCHTSHHHHHHHHH
T ss_pred             HHHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccccCCHHHHHHHHH
Confidence            8887653  233333333333    67789999999999987 11111 0001111355556633 22 79999999999


Q ss_pred             HHHHhcCCCcchHHHHH
Q 044999          403 SLINFSEDPLQHERISE  419 (461)
Q Consensus       403 ~L~~l~~~~~~~~~l~~  419 (461)
                      ++.+|...+.......+
T Consensus       225 AlGtL~~~~~~~~~~~~  241 (268)
T PF08324_consen  225 ALGTLLSSSDSAKQLAK  241 (268)
T ss_dssp             HHHHHHCCSHHHHHHCC
T ss_pred             HHHHHhccChhHHHHHH
Confidence            99999976655444433

It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.

>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=90.99  E-value=29  Score=38.36  Aligned_cols=381  Identities=13%  Similarity=0.066  Sum_probs=187.5

Q ss_pred             HHHhHHHHHHHhhcCCHHHHHHHHHHHHhhcCCCchhHHHh--hHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHhcC
Q 044999            8 WEEAFNRFEQAVVSGSEALQVKALTKLARVSKFAPQDILAA--TIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQA   85 (461)
Q Consensus         8 ~~~~~~~l~~ll~~~~~~~~~~a~~~l~~la~~~~~~~l~~--~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~   85 (461)
                      .+..+..++..+......+|..|.++|+.+....+ ..+.+  .-..+-+-+..      ...+++..|+..+....-. 
T Consensus       814 fD~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp-~vL~~~dvq~~Vh~R~~D------ssasVREAaldLvGrfvl~-  885 (1692)
T KOG1020|consen  814 FDPYLKLILSVLGENAIALRTKALKCLSMIVEADP-SVLSRPDVQEAVHGRLND------SSASVREAALDLVGRFVLS-  885 (1692)
T ss_pred             hHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhcCh-HhhcCHHHHHHHHHhhcc------chhHHHHHHHHHHhhhhhc-
Confidence            45566777778887788999999999999981111 11222  22222233321      2233555577777765553 


Q ss_pred             CchhHHHHHhcCCHHHHHhcCCCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhc---CCChHHHHHHHHH
Q 044999           86 DGALATEIGQSGVINSVLRLFPQSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLN---SCNDGTRRYLLEI  162 (461)
Q Consensus        86 ~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll~---~~~~~~~~~a~~~  162 (461)
                      .++.....+     ..+..-..+....||+.+.+.++.++...+..-.      .+..+.+++.   +.+..++.-+..+
T Consensus       886 ~~e~~~qyY-----~~i~erIlDtgvsVRKRvIKIlrdic~e~pdf~~------i~~~cakmlrRv~DEEg~I~kLv~et  954 (1692)
T KOG1020|consen  886 IPELIFQYY-----DQIIERILDTGVSVRKRVIKILRDICEETPDFSK------IVDMCAKMLRRVNDEEGNIKKLVRET  954 (1692)
T ss_pred             cHHHHHHHH-----HHHHhhcCCCchhHHHHHHHHHHHHHHhCCChhh------HHHHHHHHHHHhccchhHHHHHHHHH
Confidence            343333332     3466666777888999999999999976654322      2334555554   2333588899999


Q ss_pred             HHHhhCChHHH--HHHHhcCCHHHHHHHHcC-------CCHHHHHHHHHHH---HHhhcCchhHHHHHhcCChHHHHHhc
Q 044999          163 LSALALLREVR--RVLICLGGLRYLVEAVSF-------GSMVSRERACQAI---GLLAVTGRARRLLVELGVIPGLVELF  230 (461)
Q Consensus       163 L~~l~~~~~~~--~~~~~~~~l~~l~~~l~~-------~~~~~~~~a~~~L---~~l~~~~~~~~~~~~~~~i~~L~~ll  230 (461)
                      +.++-..+...  ..-....-+...+....+       ..+.+-...+..-   ++.+...+....-. ...+..+...+
T Consensus       955 f~klWF~p~~~~~d~~~~~~kI~~~~~vv~~~~d~~~~~~eqLl~~ilk~~~~~~~~~~~~~v~~~~v-~~~~~L~~~cl 1033 (1692)
T KOG1020|consen  955 FLKLWFTPVPEVNDQPAKARKISLEVDVVMSQVDLMNDWLEQLLDHILKFYLLKTMKESVKPVALAKV-THVLNLLTHCL 1033 (1692)
T ss_pred             HHHHhccCCCcccccHHHHHhhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHhhhhhhhhhHHHHhhc-chHHHHHHHHH
Confidence            88887322111  000001112222222211       1111111111000   11111111100000 01112222211


Q ss_pred             c------------cCCHHHH-HHHHHHHHHHhcCccchhhhhhcCCHHHHHHHhCCC-----ChhHHHHHHHHHHHhc-c
Q 044999          231 H------------IGDWTTK-LVAGNTLGVVAAHVEYITPVAEAGAIPLYAELLQGP-----DSTGKEISEDVFCILA-V  291 (461)
Q Consensus       231 ~------------~~~~~~~-~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~ll~~~-----~~~~~~~a~~~L~~l~-~  291 (461)
                      .            .+..+.+ ...+.+|..++.   .+..+....-+..|...|.+.     ...+....+.++.... .
T Consensus      1034 ~~~i~ev~~~~~~~~~~~~~~~~~lstL~~Fsk---irP~Llt~khv~tL~PYL~s~~~t~~~~~fl~~vi~Ile~VlPl 1110 (1692)
T KOG1020|consen 1034 VEKISEVESDDMNEEESEVRLLAYLSTLFVFSK---IRPQLLTKKHVITLQPYLTSKASTIEEAQFLYYVIQILECVLPL 1110 (1692)
T ss_pred             HHHHHhhhhHhhhcccchhHHHHHHHHHHHHHh---cCchhccHHHHHHhhhHHhccccchHHHHHHHHHHHHHHHHhhh
Confidence            1            1122222 233444444443   344444333345555555544     2233444444444331 1


Q ss_pred             CcccHHHHH----HHHHHHhccCCHHHHHHHHHHHHHhhCC-CCchhHHhh-cCCHHHHHHhhcCC--------CHHHHH
Q 044999          292 SEANANAIA----EHLVRILREGDNEANAAAADVLWDLAGY-KHSVPVIRN-SGAIPILVNLLRGE--------NDEVRE  357 (461)
Q Consensus       292 ~~~~~~~i~----~~l~~ll~~~~~~~~~~a~~~L~~l~~~-~~~~~~l~~-~g~i~~L~~ll~~~--------~~~v~~  357 (461)
                      -+.....+.    +.|+.++-..+......|+.|++.++.. ..+...+.. ....-..++.+++.        ....-.
T Consensus      1111 v~~~sesfL~sLEe~L~~~i~k~g~a~V~~~vsCl~sl~~k~~~~~~~v~~cf~~~~k~le~~k~s~~en~~~~~~p~l~ 1190 (1692)
T KOG1020|consen 1111 VANPSESFLASLEEDLLKRIVKMGMATVVEAVSCLGSLATKRTDGAKVVKACFSCYLKLLEVIKSSNNENADIVNFPKLQ 1190 (1692)
T ss_pred             hccchHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhccccccchhhhHHHH
Confidence            111111111    7788888777777888899999999863 233222221 11111122222222        112344


Q ss_pred             HHHHHHHHhcCC-h------hh-----HHHHHhCCChHHHHHhccCCCHHHHHHHHHHHHHhcCCC
Q 044999          358 KVSGAIAQLSYN-E------AD-----RVALADAGAVPIMIELLHDESEELRDNAAESLINFSEDP  411 (461)
Q Consensus       358 ~a~~~L~~l~~~-~------~~-----~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~  411 (461)
                      ..+.+++-++++ .      +.     .......+++..|..+.+..+.++|..|...|.-+|...
T Consensus      1191 RsiftlG~l~Ryfdf~~~~~~g~~~~~~~~~~~e~v~~lL~~f~k~~~~~lR~~al~~Lg~~ci~h 1256 (1692)
T KOG1020|consen 1191 RSIFTLGLLSRYFDFPKPSNDGKTFLQEGETLKEKVLILLMYFSKDKDGELRRKALINLGFICIQH 1256 (1692)
T ss_pred             HHHHHHHHHHHhccCCCccCCCccchhhhhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhC
Confidence            556667777661 1      11     112344566677777778888999999999999987554

>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning

Probab=90.85  E-value=2.6  Score=30.80  Aligned_cols=69  Identities=19%  Similarity=0.156  Sum_probs=56.4

Q ss_pred             hcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhccCCCHHHHHHHHHHHH
Q 044999          337 NSGAIPILVNLLRGENDEVREKVSGAIAQLSYNEADRVALADAGAVPIMIELLHDESEELRDNAAESLI  405 (461)
Q Consensus       337 ~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~  405 (461)
                      ....+..|+++++.++...+..++..+..+..++.....+.+-|++..|-++-..-++..+...-..+-
T Consensus        28 ~~~Ll~~LleWFnf~~~~~~~~VL~Ll~~L~~~~~a~~~l~~iG~~~fL~klr~~~~~~~~~~id~il~   96 (98)
T PF14726_consen   28 ERLLLKQLLEWFNFPPVPMKEEVLALLLRLLKSPYAAQILRDIGAVRFLSKLRPNVEPNLQAEIDEILD   96 (98)
T ss_pred             HHHHHHHHHHHhCCCCCccHHHHHHHHHHHHhCcHHHHHHHHccHHHHHHHHHhcCCHHHHHHHHHHHh
Confidence            445678899999988877899999999999999998999999999999877776667777666655543

>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised

Probab=90.61  E-value=0.87  Score=39.00  Aligned_cols=79  Identities=23%  Similarity=0.297  Sum_probs=60.5

Q ss_pred             HHHHHHHHHHHhhCCCCchhHHhhcCC-------HHHHHHhhc-CCCHHHHHHHHHHHHHhcC-Chhh-HHHHHhCCChH
Q 044999          314 ANAAAADVLWDLAGYKHSVPVIRNSGA-------IPILVNLLR-GENDEVREKVSGAIAQLSY-NEAD-RVALADAGAVP  383 (461)
Q Consensus       314 ~~~~a~~~L~~l~~~~~~~~~l~~~g~-------i~~L~~ll~-~~~~~v~~~a~~~L~~l~~-~~~~-~~~~~~~~~i~  383 (461)
                      -|..|+.+|+.|+..+.|.+.+...+-       +..|.+++. .+++..|+.|+..|.+|+. ++.. +....+.++|.
T Consensus       140 PqrlaLEaLcKLsV~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~i~  219 (257)
T PF12031_consen  140 PQRLALEALCKLSVIENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPCIS  219 (257)
T ss_pred             HHHHHHHHHHHhheeccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhchHH
Confidence            578999999999988888887776665       344555554 4578899999999999999 4443 35556788899


Q ss_pred             HHHHhccCC
Q 044999          384 IMIELLHDE  392 (461)
Q Consensus       384 ~L~~ll~~~  392 (461)
                      .|+.++.+.
T Consensus       220 ~Li~FiE~a  228 (257)
T PF12031_consen  220 HLIAFIEDA  228 (257)
T ss_pred             HHHHHHHHH
Confidence            999999553

This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.

>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]

Probab=90.59  E-value=13  Score=36.41  Aligned_cols=109  Identities=16%  Similarity=0.163  Sum_probs=77.6

Q ss_pred             CCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhcccCCHHHHHHHHHHHHHHhcCccchhhhh
Q 044999          180 GGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRARRLLVELGVIPGLVELFHIGDWTTKLVAGNTLGVVAAHVEYITPVA  259 (461)
Q Consensus       180 ~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~  259 (461)
                      |.+..+++.+.+++..+|..++.+|..++..-..-....-.|.+..|.+-+-+..+.++..|+.+|+.+-....+.+-.+
T Consensus        91 ~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~neen~~  170 (885)
T COG5218          91 GTFYHLLRGTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNEENRI  170 (885)
T ss_pred             HHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCChHHHH
Confidence            56778888888999999999999999998766653344445677788887778889999999999998876533332221


Q ss_pred             hcCCHHHHHHHhCC-CChhHHHHHHHHHHHhccCccc
Q 044999          260 EAGAIPLYAELLQG-PDSTGKEISEDVFCILAVSEAN  295 (461)
Q Consensus       260 ~~g~i~~L~~ll~~-~~~~~~~~a~~~L~~l~~~~~~  295 (461)
                          ...|..+++. ++.++|..|   |.|+..++..
T Consensus       171 ----~n~l~~~vqnDPS~EVRr~a---llni~vdnsT  200 (885)
T COG5218         171 ----VNLLKDIVQNDPSDEVRRLA---LLNISVDNST  200 (885)
T ss_pred             ----HHHHHHHHhcCcHHHHHHHH---HHHeeeCCCc
Confidence                3456666654 467888854   5555544433

>KOG1949 consensus Uncharacterized conserved protein [Function unknown]

Probab=90.43  E-value=16  Score=36.72  Aligned_cols=182  Identities=11%  Similarity=0.009  Sum_probs=111.4

Q ss_pred             HHHHhcCCCCCHHHHHHHHHHHHHHhc-cCh----hhHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHhhCChHHHH
Q 044999          100 NSVLRLFPQSDDSFRTVLVKCLRVFVT-FGN----ENRVIVARNGGLEIVIDLLNSCNDGTRRYLLEILSALALLREVRR  174 (461)
Q Consensus       100 ~~L~~ll~~~~~~~~~~~~~~l~~l~~-~~~----~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~  174 (461)
                      +.|.+.|+..|..||..|+..+.++-- .++    +....+.+. -+..+.++|+++-+.+|..|..-+..+...   -.
T Consensus       177 p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~k-Qf~~l~~LL~d~~p~VRS~a~~gv~k~~s~---fW  252 (1005)
T KOG1949|consen  177 PILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQK-QFEELYSLLEDPYPMVRSTAILGVCKITSK---FW  252 (1005)
T ss_pred             HHHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHH-HHHHHHHHhcCCCchHHHHHHHHHHHHHHH---HH
Confidence            455677888899999999998886543 121    222333322 366788999999999999998777665411   11


Q ss_pred             HHHhcC----CHHHHHHHHcCC-CHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhcccCCHHHHHHHHHHHHHHh
Q 044999          175 VLICLG----GLRYLVEAVSFG-SMVSRERACQAIGLLAVTGRARRLLVELGVIPGLVELFHIGDWTTKLVAGNTLGVVA  249 (461)
Q Consensus       175 ~~~~~~----~l~~l~~~l~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~  249 (461)
                      .++-..    .+..++.-+..+ ..++|......|-.+..++.....+-.  ++|.+-..+.+....++..+...|..+-
T Consensus       253 e~iP~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np~sh~~le~--~Lpal~~~l~D~se~VRvA~vd~ll~ik  330 (1005)
T KOG1949|consen  253 EMIPPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNPLSHPLLEQ--LLPALRYSLHDNSEKVRVAFVDMLLKIK  330 (1005)
T ss_pred             HHcCHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCccchhHHHH--HHHhcchhhhccchhHHHHHHHHHHHHH
Confidence            122122    233334434333 558999999999999888766443322  4566666777888889988888887765


Q ss_pred             cCccchhhhhhcCCHHHHHHHhCCCChhHHHHHHHHHHHh
Q 044999          250 AHVEYITPVAEAGAIPLYAELLQGPDSTGKEISEDVFCIL  289 (461)
Q Consensus       250 ~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l  289 (461)
                      .....+  +.+---...++..|..++..+.+.-+..+.+.
T Consensus       331 ~vra~~--f~~I~~~d~~l~~L~~d~~~v~rr~~~li~~s  368 (1005)
T KOG1949|consen  331 AVRAAK--FWKICPMDHILVRLETDSRPVSRRLVSLIFNS  368 (1005)
T ss_pred             hhhhhh--hhccccHHHHHHHHhccccHHHHHHHHHHHHh
Confidence            431111  11112244566666666655555555555444

>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []

Probab=90.21  E-value=7.6  Score=39.71  Aligned_cols=167  Identities=14%  Similarity=0.060  Sum_probs=88.1

Q ss_pred             HHHHHhcCCCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhcC----CChHHHHHHHHHHHHhh----CCh
Q 044999           99 INSVLRLFPQSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLNS----CNDGTRRYLLEILSALA----LLR  170 (461)
Q Consensus        99 l~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll~~----~~~~~~~~a~~~L~~l~----~~~  170 (461)
                      +..+.+++..+... ...++..+..+.......-..     .+..+.+++..    .++.++..|+-+++.+.    ...
T Consensus       397 v~~i~~~I~~~~~~-~~ea~~~l~~l~~~~~~Pt~e-----~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~  470 (618)
T PF01347_consen  397 VKFIKDLIKSKKLT-DDEAAQLLASLPFHVRRPTEE-----LLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNS  470 (618)
T ss_dssp             HHHHHHHHHTT-S--HHHHHHHHHHHHHT-----HH-----HHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-
T ss_pred             HHHHHHHHHcCCCC-HHHHHHHHHHHHhhcCCCCHH-----HHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecc
Confidence            55666666665443 233444454443322111111     23445555553    34567777776666655    221


Q ss_pred             ------HHHHHHHhcCCHHHHHHHHc----CCCHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhcccC---CHHH
Q 044999          171 ------EVRRVLICLGGLRYLVEAVS----FGSMVSRERACQAIGLLAVTGRARRLLVELGVIPGLVELFHIG---DWTT  237 (461)
Q Consensus       171 ------~~~~~~~~~~~l~~l~~~l~----~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~---~~~~  237 (461)
                            ...........++.+...+.    ..+.+.+..++.+|+|+..          ...++.+..++...   +..+
T Consensus       471 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~----------~~~i~~l~~~i~~~~~~~~~~  540 (618)
T PF01347_consen  471 DSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGH----------PESIPVLLPYIEGKEEVPHFI  540 (618)
T ss_dssp             ----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-----------GGGHHHHHTTSTTSS-S-HHH
T ss_pred             cccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCC----------chhhHHHHhHhhhccccchHH
Confidence                  01111122234555555554    4467888999999999833          23677777777755   6778


Q ss_pred             HHHHHHHHHHHhcCccchhhhhhcCCHHHHHHHhCCC--ChhHHHHHHHHHHH
Q 044999          238 KLVAGNTLGVVAAHVEYITPVAEAGAIPLYAELLQGP--DSTGKEISEDVFCI  288 (461)
Q Consensus       238 ~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~ll~~~--~~~~~~~a~~~L~~  288 (461)
                      |..|+.+|..++...  ...     +.+.+..++.+.  ++++|..|...|..
T Consensus       541 R~~Ai~Alr~~~~~~--~~~-----v~~~l~~I~~n~~e~~EvRiaA~~~lm~  586 (618)
T PF01347_consen  541 RVAAIQALRRLAKHC--PEK-----VREILLPIFMNTTEDPEVRIAAYLILMR  586 (618)
T ss_dssp             HHHHHHTTTTGGGT---HHH-----HHHHHHHHHH-TTS-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhcC--cHH-----HHHHHHHHhcCCCCChhHHHHHHHHHHh
Confidence            888888888775431  111     246677777544  67888777655543

Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.

>PRK09169 hypothetical protein; Validated

Probab=90.04  E-value=43  Score=38.89  Aligned_cols=108  Identities=14%  Similarity=0.054  Sum_probs=47.6

Q ss_pred             hHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHhcCC-CCCHHHHHHHHHHHHHHhcc
Q 044999           49 TIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQADGALATEIGQSGVINSVLRLFP-QSDDSFRTVLVKCLRVFVTF  127 (461)
Q Consensus        49 ~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~ll~-~~~~~~~~~~~~~l~~l~~~  127 (461)
                      .+..++..|..    -.+++ .=+.++..|..-... +......+ ..-.+..+++.|+ -++.+....++..+......
T Consensus       206 ~va~~lnalSK----wp~~~-~cr~a~~~lA~rL~~-~~~l~~~l-~~q~va~~LNAlSKWp~~~~c~~aa~~lA~rla~  278 (2316)
T PRK09169        206 EVANALNALSK----WPDSP-RCRNAAERLAERLAD-EPGLLQSL-RAQEVALLLNALSKWPDDEACRQAAEALAARLAR  278 (2316)
T ss_pred             HHHHHHHHHhc----CCCcH-HHHHHHHHHHHHHhc-ChHHHHhc-CHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHhc
Confidence            55555555654    22221 222244555444442 33333232 2222344444443 34444566666666644435


Q ss_pred             ChhhHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHH
Q 044999          128 GNENRVIVARNGGLEIVIDLLNSCNDGTRRYLLEIL  163 (461)
Q Consensus       128 ~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L  163 (461)
                      .+..+..+-..++-..|-.+-+-++......++..|
T Consensus       279 ~~~lr~~~~~Q~vAN~LNALSKwp~~~~cr~aa~~L  314 (2316)
T PRK09169        279 EPGLRLALDPQGVANALNALSKWPDTEACRQAAEAL  314 (2316)
T ss_pred             ChhhhhhcCHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence            545555544444444444444444433333333333

>KOG1788 consensus Uncharacterized conserved protein [Function unknown]

Probab=89.90  E-value=30  Score=36.79  Aligned_cols=374  Identities=15%  Similarity=0.167  Sum_probs=203.5

Q ss_pred             hhcCCHHHHHHHHHHHHhhc--CCCchhHHHh--hHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHhc-CCchhHHHH
Q 044999           19 VVSGSEALQVKALTKLARVS--KFAPQDILAA--TIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQ-ADGALATEI   93 (461)
Q Consensus        19 l~~~~~~~~~~a~~~l~~la--~~~~~~~l~~--~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~   93 (461)
                      +++++..+.......+..+-  ++++.....+  .+|.++.-+..  +|    ..+|......|-.-... +.-..++.+
T Consensus       476 LkaenkdlqaeVlnrmfkIftshpeNYricqelytvpllvlnmeg--fP----sslqvkiLkilEyAVtvvncvPeqELl  549 (2799)
T KOG1788|consen  476 LKAENKDLQAEVLNRMFKIFTSHPENYRICQELYTVPLLVLNMEG--FP----SSLQVKILKILEYAVTVVNCVPEQELL  549 (2799)
T ss_pred             HHhcCcchhhHHHHHHHHHhccChHHhhHHhhccccchhhhhhcC--CC----hHHHHHHHHHHHHHHhhhccCcHHHHH
Confidence            44556555555555555554  6666665555  77887777764  11    12443332222111110 011111111


Q ss_pred             HhcCCHHHHHhcCCCCC-HHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhcC------C---------------
Q 044999           94 GQSGVINSVLRLFPQSD-DSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLNS------C---------------  151 (461)
Q Consensus        94 ~~~~~l~~L~~ll~~~~-~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll~~------~---------------  151 (461)
                             .|.=+|+.+- ...+......+..+...+...++.+++-|.++.|...++.      +               
T Consensus       550 -------SLCvLLqqpIssalkhtIlsffvKLIsfDqqyKkvlREVGvLevLqddlkqhkll~gpdqysgvsehydrnps  622 (2799)
T KOG1788|consen  550 -------SLCVLLQQPISSALKHTILSFFVKLISFDQQYKKVLREVGVLEVLQDDLKQHKLLRGPDQYSGVSEHYDRNPS  622 (2799)
T ss_pred             -------HHHHHhcchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHhhhccCcchhhhHHHHhhcCCC
Confidence                   2223344332 2333344444446776777888999999988888765532      0               


Q ss_pred             C----------------hH----------HHH------HHHHHHHHhh-CChHHHHHHHhcCCHHHHHHHHcCCCHHHHH
Q 044999          152 N----------------DG----------TRR------YLLEILSALA-LLREVRRVLICLGGLRYLVEAVSFGSMVSRE  198 (461)
Q Consensus       152 ~----------------~~----------~~~------~a~~~L~~l~-~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~  198 (461)
                      +                +.          +.+      ....+|..+. .+.++...+.+..++..++.++  -+++.|.
T Consensus       623 s~sf~~~ld~~daiisspklmeSgsgklplfevlltitvgwDcLisllKnnteNqklFreanGvklilpfl--indehRS  700 (2799)
T KOG1788|consen  623 SPSFKQHLDSQDAIISSPKLMESGSGKLPLFEVLLTITVGWDCLISLLKNNTENQKLFREANGVKLILPFL--INDEHRS  700 (2799)
T ss_pred             CchhhhccccccceeecchhhcccCCccchhhhhhhhhchHHHHHHHHhccchhhHHHHhhcCceEEEEee--echHHHH
Confidence            0                00          000      1123344444 4566666677777777776666  3556777


Q ss_pred             HHHHHHHHhhcCchhHHHHHhcCChHHHHHhcccC--------C----HHHHHHHHHHHHHHhcC-ccchhhhhhcCCHH
Q 044999          199 RACQAIGLLAVTGRARRLLVELGVIPGLVELFHIG--------D----WTTKLVAGNTLGVVAAH-VEYITPVAEAGAIP  265 (461)
Q Consensus       199 ~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~--------~----~~~~~~a~~~L~~l~~~-~~~~~~~~~~g~i~  265 (461)
                      ..++++..|...++.+   +...-+-.++..++++        +    ........++++.+-.. ...+..+.+.++..
T Consensus       701 slLrivscLitvdpkq---vhhqelmalVdtLksgmvt~IsgeqyklhfsllcdlmGalwrivgvngsaqrvFgeatGFs  777 (2799)
T KOG1788|consen  701 SLLRIVSCLITVDPKQ---VHHQELMALVDTLKSGMVTRISGEQYKLHFSLLCDLMGALWRIVGVNGSAQRVFGEATGFS  777 (2799)
T ss_pred             HHHHHHHHHhccCccc---ccHHHHHHHHHHHHhcceeccchhHHHHHHHHHHHHHHHHHHHHccCchheeehhccccHH
Confidence            8888887776554431   0111234455555542        1    12334455666665533 56677788888888


Q ss_pred             HHHHHhCCC------Ch--h--HHHHHHHHHHHh-----ccCcccHHHHH-----HHHHHHhccCC--------------
Q 044999          266 LYAELLQGP------DS--T--GKEISEDVFCIL-----AVSEANANAIA-----EHLVRILREGD--------------  311 (461)
Q Consensus       266 ~L~~ll~~~------~~--~--~~~~a~~~L~~l-----~~~~~~~~~i~-----~~l~~ll~~~~--------------  311 (461)
                      .|...+..-      .+  +  +-..-...|..+     ..++.++..+.     +.+..+|+...              
T Consensus       778 lLlttLhtfqgftelhdesDlcvyiklfkilFrlfTlavcenasNrmklhtvITsqtftsLLresgllcvnler~viqll  857 (2799)
T KOG1788|consen  778 LLLTTLHTFQGFTELHDESDLCVYIKLFKILFRLFTLAVCENASNRMKLHTVITSQTFTSLLRESGLLCVNLERHVIQLL  857 (2799)
T ss_pred             HHHHHHHHhccchhcCCchhhhhHHHHHHHHHHHHHHHHhhcchhhhheeeeeeHHHHHHHHHHhccceecchHHHHHHH
Confidence            777665321      11  1  111111222211     23444443322     33333332111              


Q ss_pred             ----------H--HHHHHHHHHHHHhhCC-----------CCchhHHhhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcC
Q 044999          312 ----------N--EANAAAADVLWDLAGY-----------KHSVPVIRNSGAIPILVNLLRGENDEVREKVSGAIAQLSY  368 (461)
Q Consensus       312 ----------~--~~~~~a~~~L~~l~~~-----------~~~~~~l~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~  368 (461)
                                |  .--..|+..+..+-.+           ...++.+...|++..|++.+-...+..+..-+..+..+++
T Consensus       858 lElalevlvppfLtSEsaAcaeVfelednifavntPsGqfnpdk~~iynagavRvlirslLlnypK~qlefl~lleSlaR  937 (2799)
T KOG1788|consen  858 LELALEVLVPPFLTSESAACAEVFELEDNIFAVNTPSGQFNPDKQKIYNAGAVRVLIRSLLLNYPKLQLEFLNLLESLAR  937 (2799)
T ss_pred             HHHHHHhhCCchhhhhHHHHHHHhhcccceeeeccCCCCcCchHhhhcccchhHHHHHHHHhhChHHHHHHHHHHHHHhh
Confidence                      1  1112333333333211           1346778899999999999888889999999999999999


Q ss_pred             -ChhhHHHHHhCCChHHHHHhc---cCCCHHHHHHHHHHHHHhcCC
Q 044999          369 -NEADRVALADAGAVPIMIELL---HDESEELRDNAAESLINFSED  410 (461)
Q Consensus       369 -~~~~~~~~~~~~~i~~L~~ll---~~~~~~~~~~a~~~L~~l~~~  410 (461)
                       ++.+++.....|+++.|++++   .++.......+..++..|+..
T Consensus       938 aspfnaelltS~gcvellleIiypflsgsspfLshalkIvemLgay  983 (2799)
T KOG1788|consen  938 ASPFNAELLTSAGCVELLLEIIYPFLSGSSPFLSHALKIVEMLGAY  983 (2799)
T ss_pred             cCCCchhhhhcccHHHHHHHHhhhhhcCCchHhhccHHHHHHHhhc
Confidence             999999999999999999977   234555555556555555443

>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []

Probab=89.86  E-value=11  Score=38.56  Aligned_cols=161  Identities=20%  Similarity=0.223  Sum_probs=93.3

Q ss_pred             ChHHHHHhcccCCHHHHHHHHHHHHHHhcCc-cchhhhhhcCCHHHHHHHhCCC----ChhHHHHHHHHHHHhc----cC
Q 044999          222 VIPGLVELFHIGDWTTKLVAGNTLGVVAAHV-EYITPVAEAGAIPLYAELLQGP----DSTGKEISEDVFCILA----VS  292 (461)
Q Consensus       222 ~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~g~i~~L~~ll~~~----~~~~~~~a~~~L~~l~----~~  292 (461)
                      .+..+.+++.+......+ +...|..+.... .--..+     +..+..++++.    ++.++..|..+++.+.    ..
T Consensus       396 av~~i~~~I~~~~~~~~e-a~~~l~~l~~~~~~Pt~e~-----l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~  469 (618)
T PF01347_consen  396 AVKFIKDLIKSKKLTDDE-AAQLLASLPFHVRRPTEEL-----LKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVN  469 (618)
T ss_dssp             HHHHHHHHHHTT-S-HHH-HHHHHHHHHHT-----HHH-----HHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHcCCCCHHH-HHHHHHHHHhhcCCCCHHH-----HHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeec
Confidence            455666666664333332 445566655541 222222     56677777653    4667777887777773    22


Q ss_pred             c-------c----cHHHHHHHHHHHh----ccCCHHHHHHHHHHHHHhhCCCCchhHHhhcCCHHHHHHhhcCC---CHH
Q 044999          293 E-------A----NANAIAEHLVRIL----REGDNEANAAAADVLWDLAGYKHSVPVIRNSGAIPILVNLLRGE---NDE  354 (461)
Q Consensus       293 ~-------~----~~~~i~~~l~~ll----~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~ll~~~---~~~  354 (461)
                      .       .    ....+.+.+.+.+    ..++.+.+..++.+|+|+..          ...++.|..++...   +..
T Consensus       470 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~----------~~~i~~l~~~i~~~~~~~~~  539 (618)
T PF01347_consen  470 SDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGH----------PESIPVLLPYIEGKEEVPHF  539 (618)
T ss_dssp             -----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-----------GGGHHHHHTTSTTSS-S-HH
T ss_pred             ccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCC----------chhhHHHHhHhhhccccchH
Confidence            1       0    0111115555544    35577888999999999943          34677788887766   677


Q ss_pred             HHHHHHHHHHHhcC-ChhhHHHHHhCCChHHHHHhcc--CCCHHHHHHHHHHHHH
Q 044999          355 VREKVSGAIAQLSY-NEADRVALADAGAVPIMIELLH--DESEELRDNAAESLIN  406 (461)
Q Consensus       355 v~~~a~~~L~~l~~-~~~~~~~~~~~~~i~~L~~ll~--~~~~~~~~~a~~~L~~  406 (461)
                      +|..|+++|..++. .++.        +.+.+..++.  ..++++|..|..+|..
T Consensus       540 ~R~~Ai~Alr~~~~~~~~~--------v~~~l~~I~~n~~e~~EvRiaA~~~lm~  586 (618)
T PF01347_consen  540 IRVAAIQALRRLAKHCPEK--------VREILLPIFMNTTEDPEVRIAAYLILMR  586 (618)
T ss_dssp             HHHHHHHTTTTGGGT-HHH--------HHHHHHHHHH-TTS-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhcCcHH--------HHHHHHHHhcCCCCChhHHHHHHHHHHh
Confidence            99999999998866 4421        2455666663  4678899888776655

Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.

>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes

Probab=89.86  E-value=14  Score=33.03  Aligned_cols=178  Identities=17%  Similarity=0.093  Sum_probs=109.8

Q ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHhhcCchhHHHHHhcC--ChHHHHHhcc----cCCHHHHHHHHHHHHHHhcCccch
Q 044999          182 LRYLVEAVSFGSMVSRERACQAIGLLAVTGRARRLLVELG--VIPGLVELFH----IGDWTTKLVAGNTLGVVAAHVEYI  255 (461)
Q Consensus       182 l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~--~i~~L~~ll~----~~~~~~~~~a~~~L~~l~~~~~~~  255 (461)
                      ...+...+..-+.+-+--++..++-+..+++....+...+  ....+..++.    +..+..+..+++++.|+-.++..+
T Consensus        65 ~~~~~~~~~~Wp~~~~fP~lDLlRl~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~~~~~  144 (268)
T PF08324_consen   65 LILLLKILLSWPPESRFPALDLLRLAALHPPASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFSHPPGR  144 (268)
T ss_dssp             HHHHHHHHCCS-CCC-HHHHHHHHHHCCCHCHHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTSCCCH
T ss_pred             HHHHHHHHHhCCCccchhHHhHHHHHHhCccHHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCCCccH
Confidence            3444555544444557778888888877777655554433  2344444443    346778889999999999998888


Q ss_pred             hhhhhcC--CHHHHHHHhCCC----ChhHHHHHHHHHHHhcc-----C--cccHHHHHHHHHHHhcc--CCHHHHHHHHH
Q 044999          256 TPVAEAG--AIPLYAELLQGP----DSTGKEISEDVFCILAV-----S--EANANAIAEHLVRILRE--GDNEANAAAAD  320 (461)
Q Consensus       256 ~~~~~~g--~i~~L~~ll~~~----~~~~~~~a~~~L~~l~~-----~--~~~~~~i~~~l~~ll~~--~~~~~~~~a~~  320 (461)
                      ..+..+.  .+...+..+...    +..++..++..+.|++.     .  .+.+..+...+.+.+..  .+++....++.
T Consensus       145 ~~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ll~~i~~~~~~~~~d~Ea~~R~Lv  224 (268)
T PF08324_consen  145 QLLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSELLSSIIEVLSREESDEEALYRLLV  224 (268)
T ss_dssp             HHHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHHHHHHHHHCHCCHTSHHHHHHHHH
T ss_pred             HHHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccccCCHHHHHHHHH
Confidence            8877653  344443333333    67788888889999852     1  22233345666674433  58999999999


Q ss_pred             HHHHhhCCCCchhHHhhc-CCHHHHHHhhc-CCCHHHHHHH
Q 044999          321 VLWDLAGYKHSVPVIRNS-GAIPILVNLLR-GENDEVREKV  359 (461)
Q Consensus       321 ~L~~l~~~~~~~~~l~~~-g~i~~L~~ll~-~~~~~v~~~a  359 (461)
                      +|+++...+.......+. |+-..+...-. ...++++..+
T Consensus       225 AlGtL~~~~~~~~~~~~~l~~~~~~~~~~~~~~e~ri~~v~  265 (268)
T PF08324_consen  225 ALGTLLSSSDSAKQLAKSLDVKSVLSKKANKSKEPRIKEVA  265 (268)
T ss_dssp             HHHHHHCCSHHHHHHCCCCTHHHHHHHHHHHTTSHHHHHHH
T ss_pred             HHHHHhccChhHHHHHHHcChHHHHHHHHhcccchHHHHHh
Confidence            999999766555555543 33333333332 3345555443

It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.

>PF10363 DUF2435: Protein of unknown function (DUF2435)

Probab=89.83  E-value=3.4  Score=29.89  Aligned_cols=70  Identities=11%  Similarity=0.106  Sum_probs=54.5

Q ss_pred             HHhHHHHHHHhhcCCHHHHHHHHHHHHhhc-CCC-chhHHHhhHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHhc
Q 044999            9 EEAFNRFEQAVVSGSEALQVKALTKLARVS-KFA-PQDILAATIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQ   84 (461)
Q Consensus         9 ~~~~~~l~~ll~~~~~~~~~~a~~~l~~la-~~~-~~~~l~~~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~   84 (461)
                      .+.++..+..+.++.+.+|-++...|..|. +.. ....+..++..+++.|+.      +|+-+-..|+.+|..|+..
T Consensus         2 ~~~~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~~~~~~~~~il~l~l~~L~d------~DsyVYL~aI~~L~~La~~   73 (92)
T PF10363_consen    2 RETLQEALSDLNDPLPPVRAHGLVLLRKLIESKSEPVIDIPKILDLFLSQLKD------EDSYVYLNAIKGLAALADR   73 (92)
T ss_pred             hHHHHHHHHHccCCCcchHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHcCC------CCchHHHHHHHHHHHHHHH
Confidence            356777888889999999999999999999 444 333333388888888875      4566777799999999974

>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length

Probab=89.80  E-value=13  Score=32.51  Aligned_cols=127  Identities=15%  Similarity=0.099  Sum_probs=75.7

Q ss_pred             CCcHHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHhcCCCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHH
Q 044999           65 NLTRSIQQAAAYCLKQIASQADGALATEIGQSGVINSVLRLFPQSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIV  144 (461)
Q Consensus        65 ~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L  144 (461)
                      ..++..+.....+|..++..++ .+...     +++.+..+.+.+....+..+...+..+-..++..   +   +.+..+
T Consensus        12 ~~~~~~~~~~L~~L~~l~~~~~-~~~~~-----v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~---f---~~L~~~   79 (234)
T PF12530_consen   12 ISDPELQLPLLEALPSLACHKN-VCVPP-----VLQTLVSLVEQGSLELRYVALRLLTLLWKANDRH---F---PFLQPL   79 (234)
T ss_pred             CCChHHHHHHHHHHHHHhccCc-cchhH-----HHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchH---H---HHHHHH
Confidence            3568899999999999998521 33222     3566677777776665444444444444433221   1   233333


Q ss_pred             HHHh--c------CC--ChHHHHHHHHHHHHhh-CChHHHHHHHhcCCHHHHHHHH-cCCCHHHHHHHHHHHHHhh
Q 044999          145 IDLL--N------SC--NDGTRRYLLEILSALA-LLREVRRVLICLGGLRYLVEAV-SFGSMVSRERACQAIGLLA  208 (461)
Q Consensus       145 ~~ll--~------~~--~~~~~~~a~~~L~~l~-~~~~~~~~~~~~~~l~~l~~~l-~~~~~~~~~~a~~~L~~l~  208 (461)
                      +..+  +      +.  ..+........+..+| ..++     .-...++.+..++ ++.++..+..++.++..++
T Consensus        80 L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~-----~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc  150 (234)
T PF12530_consen   80 LLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPD-----HGVDLLPLLSGCLNQSCDEVAQALALEALAPLC  150 (234)
T ss_pred             HHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChh-----hHHHHHHHHHHHHhccccHHHHHHHHHHHHHHH
Confidence            3331  1      11  1133344445677777 4444     2223577788888 7778899999999999998

>PF10363 DUF2435: Protein of unknown function (DUF2435)

Probab=89.73  E-value=0.93  Score=32.82  Aligned_cols=68  Identities=19%  Similarity=0.174  Sum_probs=50.2

Q ss_pred             HHHHhccCCHHHHHHHHHHHHHhhCCCCchhHHhhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcC-Chh
Q 044999          303 LVRILREGDNEANAAAADVLWDLAGYKHSVPVIRNSGAIPILVNLLRGENDEVREKVSGAIAQLSY-NEA  371 (461)
Q Consensus       303 l~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~-~~~  371 (461)
                      .+..+.++.+-+|..++..|+.|..... .......+++..+...++++++-|-..|+.+|..|+. .++
T Consensus         8 al~~L~dp~~PvRa~gL~~L~~Li~~~~-~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~   76 (92)
T PF10363_consen    8 ALSDLNDPLPPVRAHGLVLLRKLIESKS-EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPD   76 (92)
T ss_pred             HHHHccCCCcchHHHHHHHHHHHHHcCC-cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChH
Confidence            3445566667778888888888886544 2333344677778888899999999999999999997 554

>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II

Probab=89.27  E-value=15  Score=32.64  Aligned_cols=217  Identities=15%  Similarity=0.087  Sum_probs=126.3

Q ss_pred             HHHhcCCCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhcC--CChHHHHHHHHHHHHhhCChHHHHHHHh
Q 044999          101 SVLRLFPQSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLNS--CNDGTRRYLLEILSALALLREVRRVLIC  178 (461)
Q Consensus       101 ~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll~~--~~~~~~~~a~~~L~~l~~~~~~~~~~~~  178 (461)
                      .|-..|.+.++.+|..+..++......-+...   ....-+..|+++..+  .|......++..+..+.......... .
T Consensus         3 ~Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~---L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~~~~~~~-~   78 (262)
T PF14500_consen    3 SLGEYLTSEDPIIRAKALELLSEVLERLPPDF---LSRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMKNFSPES-A   78 (262)
T ss_pred             chhhhhCCCCHHHHHHHHHHHHHHHHhCCHhh---ccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCcCCChhh-H
Confidence            34567888999999999988886664332211   111224555554432  34445555566666665222211111 1


Q ss_pred             cCCHHHHHHHHc--CCCHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhccc-CCHHHHHHHHHHHHHHhcCccch
Q 044999          179 LGGLRYLVEAVS--FGSMVSRERACQAIGLLAVTGRARRLLVELGVIPGLVELFHI-GDWTTKLVAGNTLGVVAAHVEYI  255 (461)
Q Consensus       179 ~~~l~~l~~~l~--~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~~~~~a~~~L~~l~~~~~~~  255 (461)
                      ...+..+++-..  ......|..+...+..+..+....-.-...+.+..+++.+.. .||.....+...+..+...-+. 
T Consensus        79 ~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~~-  157 (262)
T PF14500_consen   79 VKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFDI-  157 (262)
T ss_pred             HHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhccc-
Confidence            112333333222  224467888888888887665432111224577888888874 5889888888888887765222 


Q ss_pred             hhhhhcCCHHHHHHHhCC-------C---Ch--hHHHHHHHHHH-HhccCcccHHHHHHHHHHHhccCCHHHHHHHHHHH
Q 044999          256 TPVAEAGAIPLYAELLQG-------P---DS--TGKEISEDVFC-ILAVSEANANAIAEHLVRILREGDNEANAAAADVL  322 (461)
Q Consensus       256 ~~~~~~g~i~~L~~ll~~-------~---~~--~~~~~a~~~L~-~l~~~~~~~~~i~~~l~~ll~~~~~~~~~~a~~~L  322 (461)
                           ....+.+.+.+..       +   ++  -.++.-...|. .++.++.......|.+++-|.++.+.++..++.+|
T Consensus       158 -----~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~fa~~~~p~LleKL~s~~~~~K~D~L~tL  232 (262)
T PF14500_consen  158 -----SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPLFAPFAFPLLLEKLDSTSPSVKLDSLQTL  232 (262)
T ss_pred             -----chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHhhHHHHHHHHHHHHcCCCcHHHHHHHHHH
Confidence                 2223444444321       1   22  12333333444 34666666666669999999999999999999999


Q ss_pred             HHhhC
Q 044999          323 WDLAG  327 (461)
Q Consensus       323 ~~l~~  327 (461)
                      ...+.
T Consensus       233 ~~c~~  237 (262)
T PF14500_consen  233 KACIE  237 (262)
T ss_pred             HHHHH
Confidence            88764

>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]

Probab=89.19  E-value=28  Score=35.44  Aligned_cols=167  Identities=10%  Similarity=-0.000  Sum_probs=94.9

Q ss_pred             HHHHhhc-CCCchhHHHhhHHHHHHhhccCCCCCCC-cHHHHHH-HHHHHHHHHh--cCCchhHHHHHhcCCHHHHHhcC
Q 044999           32 TKLARVS-KFAPQDILAATIPILARLLGENNFSGNL-TRSIQQA-AAYCLKQIAS--QADGALATEIGQSGVINSVLRLF  106 (461)
Q Consensus        32 ~~l~~la-~~~~~~~l~~~i~~l~~~l~~~~~~~~~-~~~~~~~-a~~~L~~l~~--~~~~~~~~~~~~~~~l~~L~~ll  106 (461)
                      ..+.-++ ....+..+..+++-+.+.|.......++ |...|.. |.+.+.++..  . .......+.+.=.++.++-.+
T Consensus       391 l~fl~~~~sKrke~TfqgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~it-k~sp~an~me~fiv~hv~P~f  469 (970)
T COG5656         391 LFFLIISKSKRKEETFQGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFIT-KMSPAANVMEYFIVNHVIPAF  469 (970)
T ss_pred             HHHHHHHhcccchhhhhhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhc-cCchHHHHHHHHHHHHhhHhh
Confidence            3333344 6666666777888888888432222222 4556666 7777777765  2 222233333444455555566


Q ss_pred             CCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHhhCChHHHHHHHhc--CCHHH
Q 044999          107 PQSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLNSCNDGTRRYLLEILSALALLREVRRVLICL--GGLRY  184 (461)
Q Consensus       107 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~--~~l~~  184 (461)
                      ++..--.+.+++..+..+..+-+   ..-.-..+.+.....+.+.+-.++..|+-++.-+-.+......+-+.  +.++.
T Consensus       470 ~s~ygfL~Srace~is~~eeDfk---d~~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~q~h~k~sahVp~tmek  546 (970)
T COG5656         470 RSNYGFLKSRACEFISTIEEDFK---DNGILLEAYENTHNCLKNNHLPVMIEAALALQFFIFNEQSHEKFSAHVPETMEK  546 (970)
T ss_pred             cCcccchHHHHHHHHHHHHHhcc---cchHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhchhhhHHHHhhhhHHHHH
Confidence            67666667888888776643221   11222224555666777777788888888888877666555554432  34445


Q ss_pred             HHHHHcCCCHHHHHHHHH
Q 044999          185 LVEAVSFGSMVSRERACQ  202 (461)
Q Consensus       185 l~~~l~~~~~~~~~~a~~  202 (461)
                      ++.+-+.-+.+.....+.
T Consensus       547 LLsLSn~feiD~LS~vMe  564 (970)
T COG5656         547 LLSLSNTFEIDPLSMVME  564 (970)
T ss_pred             HHHhcccccchHHHHHHH
Confidence            554444444454444443

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=89.10  E-value=11  Score=37.56  Aligned_cols=173  Identities=6%  Similarity=0.026  Sum_probs=102.7

Q ss_pred             HHhCCCChhHHHHHHHHHHHhccCcccHHHHH------HHHHHHhcc--CCHHHHHHHHHHHHHhhCCCCchhHHhhcCC
Q 044999          269 ELLQGPDSTGKEISEDVFCILAVSEANANAIA------EHLVRILRE--GDNEANAAAADVLWDLAGYKHSVPVIRNSGA  340 (461)
Q Consensus       269 ~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~i~------~~l~~ll~~--~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~  340 (461)
                      ..+..-+++.+..|+.+|.-+..+...-..+.      ..+..++..  .++..+..++++|.|+-.++..++.+...  
T Consensus       551 ~~l~~wp~~~~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~~~~an~ll~vR~L~N~f~~~~g~~~~~s~--  628 (745)
T KOG0301|consen  551 AILLQWPVEMMFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILNADPANQLLVVRCLANLFSNPAGRELFMSR--  628 (745)
T ss_pred             HHHhcCCHHHhhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhcccccchhHHHHHHHHHHHhccCHHHHHHHHHH--
Confidence            33444567778888888887765554433222      222233322  46888889999999999887777776654  


Q ss_pred             HHHHHHhh----cCCCHHHHHHHHHHHHHhcC--ChhhHHHHHhCCChHHHHHhccC-----CCHHHHHHHHHHHHHhcC
Q 044999          341 IPILVNLL----RGENDEVREKVSGAIAQLSY--NEADRVALADAGAVPIMIELLHD-----ESEELRDNAAESLINFSE  409 (461)
Q Consensus       341 i~~L~~ll----~~~~~~v~~~a~~~L~~l~~--~~~~~~~~~~~~~i~~L~~ll~~-----~~~~~~~~a~~~L~~l~~  409 (461)
                      ...+...+    ...+..++........|++.  ...+ .   +.++.+.+...+..     .+-+.......||.+|+.
T Consensus       629 ~~~i~~~~~~~~s~~~knl~ia~atlaln~sv~l~~~~-~---~~~~~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL~t  704 (745)
T KOG0301|consen  629 LESILDPVIEASSLSNKNLQIALATLALNYSVLLIQDN-E---QLEGKEVLLSAISTLLEPVDDLEAIYRLLVALGTLMT  704 (745)
T ss_pred             HHHHhhhhhhhhcccchhHHHHHHHHHHHHHHHHHhcc-c---ccchHHHHHHHHHhhcccchhHHHHHHHHHHHHhhcc
Confidence            22222222    23345566665555556554  1111 1   14455555555422     233456678889999999


Q ss_pred             CCcchHHHHHhhCCchHHhHHHHHHHhhhchhHHHHHHHHHhH
Q 044999          410 DPLQHERISEAIGIPSFQSMQSRLTRIRASDDLMARSMRRMSI  452 (461)
Q Consensus       410 ~~~~~~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~  452 (461)
                      .+....++++...+..+.+..+...     ..++.+..++.++
T Consensus       705 ~~~~~~~~A~~~~v~sia~~~~~~~-----~~~~~k~~a~~il  742 (745)
T KOG0301|consen  705 VDASVIQLAKNRSVDSIAKKLKEAV-----SNPSGKNIARDIL  742 (745)
T ss_pred             ccHHHHHHHHhcCHHHHHHHHHHhc-----cCchhhHHHHHHH
Confidence            9888888888777777666555332     2344555555543

>PRK09169 hypothetical protein; Validated

Probab=88.43  E-value=56  Score=38.06  Aligned_cols=39  Identities=15%  Similarity=0.170  Sum_probs=26.1

Q ss_pred             hhCCchHHhHHHHHHHhhhchhHHHHHHHHHhHhhhccCCC
Q 044999          420 AIGIPSFQSMQSRLTRIRASDDLMARSMRRMSIEQLTWDPD  460 (461)
Q Consensus       420 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~  460 (461)
                      ......+.+.++.+.+|.+  .+..+.++.....-+..+|+
T Consensus       705 ~f~aq~lAn~LnAlsKwp~--~~acr~A~~~LA~rL~~~~~  743 (2316)
T PRK09169        705 AFDAQGVANALNALSKWPE--EEACRAAAEALAGRLAADAD  743 (2316)
T ss_pred             hcCHHHHHHHHHHHHhccC--ccHHHHHHHHHHHHHhcChH
Confidence            3456677788888888884  44566666666666666654

>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length

Probab=88.11  E-value=10  Score=30.84  Aligned_cols=139  Identities=12%  Similarity=0.101  Sum_probs=76.6

Q ss_pred             CHHHHHHHHcCC-CHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhcccCCHHHHHHHHHHHHHHhcCccchhhhh
Q 044999          181 GLRYLVEAVSFG-SMVSRERACQAIGLLAVTGRARRLLVELGVIPGLVELFHIGDWTTKLVAGNTLGVVAAHVEYITPVA  259 (461)
Q Consensus       181 ~l~~l~~~l~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~  259 (461)
                      .++.|+++++.+ ++.+|..++++++.+..-++.+......+. +.-  .-...+......   .+.+... ....+...
T Consensus        11 LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~~-~~~--~~~~~~~~~~~~---~l~~~~~-~~~~ee~y   83 (160)
T PF11865_consen   11 LLDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKSL-DSK--SSENSNDESTDI---SLPMMGI-SPSSEEYY   83 (160)
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhcccccC-Ccc--ccccccccchhh---HHhhccC-CCchHHHH
Confidence            467788888776 689999999999999887777443222111 100  000111111111   1111111 11222333


Q ss_pred             hcCCHHHHHHHhCCCC-hhHHHHHHHHHHHhc--cCccc---HHHHHHHHHHHhccCCHHHHHHHHHHHHHhh
Q 044999          260 EAGAIPLYAELLQGPD-STGKEISEDVFCILA--VSEAN---ANAIAEHLVRILREGDNEANAAAADVLWDLA  326 (461)
Q Consensus       260 ~~g~i~~L~~ll~~~~-~~~~~~a~~~L~~l~--~~~~~---~~~i~~~l~~ll~~~~~~~~~~a~~~L~~l~  326 (461)
                      -..++..|+..++++. ..-+..+..++.++-  ....+   -.++.|.+++.+++.++..++....-|+.|.
T Consensus        84 ~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~lv  156 (160)
T PF11865_consen   84 PTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPDSLREFYFQQLADLV  156 (160)
T ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence            3345778888887763 233334455555442  22222   2333399999999887788888777777664

It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].

>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal

Probab=88.10  E-value=19  Score=32.10  Aligned_cols=161  Identities=11%  Similarity=0.048  Sum_probs=86.9

Q ss_pred             HHHHHHHHHHHHHhcCcc--------chhhhhhcCCHHHHHHHhCCCC----hhHHHHHHHHHHHhccCcccHHHHHHHH
Q 044999          236 TTKLVAGNTLGVVAAHVE--------YITPVAEAGAIPLYAELLQGPD----STGKEISEDVFCILAVSEANANAIAEHL  303 (461)
Q Consensus       236 ~~~~~a~~~L~~l~~~~~--------~~~~~~~~g~i~~L~~ll~~~~----~~~~~~a~~~L~~l~~~~~~~~~i~~~l  303 (461)
                      ...+.+...|..+...++        .|-.+.-.+.+|.++.-+.+++    ......++..|..++.... ...+...+
T Consensus        77 ~t~e~tl~lL~~L~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~~~A~~La~~a~~~~-~~~La~il  155 (262)
T PF14225_consen   77 STYELTLRLLSRLTPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECIEIAEALAQVAEAQG-LPNLARIL  155 (262)
T ss_pred             CcHHHHHHHHHHHhcCCCccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHhCC-CccHHHHH
Confidence            445566667777765422        2222222345677777776666    1334455566776663221 11222222


Q ss_pred             HHHhccCC---HHHHHHHHHHHHHhhCCCCchhHHhhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCChhhHHHHHhCC
Q 044999          304 VRILREGD---NEANAAAADVLWDLAGYKHSVPVIRNSGAIPILVNLLRGENDEVREKVSGAIAQLSYNEADRVALADAG  380 (461)
Q Consensus       304 ~~ll~~~~---~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~  380 (461)
                      ....+...   .+-...++..|+.-.. |+.     ....+..|++++.++.+.++..++.+|..+-...+.+.. ...+
T Consensus       156 ~~ya~~~fr~~~dfl~~v~~~l~~~f~-P~~-----~~~~l~~Ll~lL~n~~~w~~~~~L~iL~~ll~~~d~~~~-~~~d  228 (262)
T PF14225_consen  156 SSYAKGRFRDKDDFLSQVVSYLREAFF-PDH-----EFQILTFLLGLLENGPPWLRRKTLQILKVLLPHVDMRSP-HGAD  228 (262)
T ss_pred             HHHHhcCCCCHHHHHHHHHHHHHHHhC-chh-----HHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhccccCCCC-cchH
Confidence            22222222   2222333333332211 222     223456688999999999999999999999884444433 4455


Q ss_pred             ChHHHHHhccCCCHHHHHHHHHHH
Q 044999          381 AVPIMIELLHDESEELRDNAAESL  404 (461)
Q Consensus       381 ~i~~L~~ll~~~~~~~~~~a~~~L  404 (461)
                      .+.++.++++++.-.-.......+
T Consensus       229 lispllrlL~t~~~~eAL~VLd~~  252 (262)
T PF14225_consen  229 LISPLLRLLQTDLWMEALEVLDEI  252 (262)
T ss_pred             HHHHHHHHhCCccHHHHHHHHHHH
Confidence            789999999766544333333333

>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein)

Probab=87.77  E-value=2.3  Score=33.85  Aligned_cols=73  Identities=8%  Similarity=0.144  Sum_probs=61.5

Q ss_pred             CHHHHHHhhcCCCHHHHHHHHHHHHHhcC--ChhhHHHHHhCCChHHHHHhccC-CCHHHHHHHHHHHHHhcCCCc
Q 044999          340 AIPILVNLLRGENDEVREKVSGAIAQLSY--NEADRVALADAGAVPIMIELLHD-ESEELRDNAAESLINFSEDPL  412 (461)
Q Consensus       340 ~i~~L~~ll~~~~~~v~~~a~~~L~~l~~--~~~~~~~~~~~~~i~~L~~ll~~-~~~~~~~~a~~~L~~l~~~~~  412 (461)
                      ++..|.+-+.++++.++..|+..|-.+..  ....+..+.+.+.+..|.+++.. .++.++..+...+...+....
T Consensus        38 a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~f~  113 (144)
T cd03568          38 CLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADEFK  113 (144)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHhC
Confidence            46668888889999999999999999988  45567788888889999999976 799999999999998875443

Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.

>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus

Probab=86.57  E-value=18  Score=30.33  Aligned_cols=122  Identities=16%  Similarity=0.046  Sum_probs=75.9

Q ss_pred             CHHHHHHHhcCCChHHHHHHHHHHHHhhCChHHHHHHHh-cCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCchh--HHH
Q 044999          140 GLEIVIDLLNSCNDGTRRYLLEILSALALLREVRRVLIC-LGGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRA--RRL  216 (461)
Q Consensus       140 ~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~-~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~--~~~  216 (461)
                      .++.++++.-+++..++..|+.++..+.     ++.++. ..++|.++.+..++++.++..|...+..+....+.  ...
T Consensus         9 yl~~Il~~~~~~~~~vr~~Al~~l~~il-----~qGLvnP~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~v~~~   83 (187)
T PF12830_consen    9 YLKNILELCLSSDDSVRLAALQVLELIL-----RQGLVNPKQCVPTLIALETSPNPSIRSRAYQLLKELHEKHESLVESR   83 (187)
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHHH-----hcCCCChHHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHHHHHH
Confidence            3567788888899999999999987654     111111 12799999999999999999999999999776665  222


Q ss_pred             HHhcCChHHHHHhccc--CCHH--H---HHHHHHHHHHHhcC-ccchhhhhhcCCHHHHHHHhCC
Q 044999          217 LVELGVIPGLVELFHI--GDWT--T---KLVAGNTLGVVAAH-VEYITPVAEAGAIPLYAELLQG  273 (461)
Q Consensus       217 ~~~~~~i~~L~~ll~~--~~~~--~---~~~a~~~L~~l~~~-~~~~~~~~~~g~i~~L~~ll~~  273 (461)
                      ..+  ++..-...-..  ++..  .   ......-+..+... ...|..+     +..+++.+..
T Consensus        84 ~~~--gi~~af~~~~~l~~~~~~~~~~~~~~~l~~ly~ll~~~r~~R~~F-----l~~l~k~f~~  141 (187)
T PF12830_consen   84 YSE--GIRLAFDYQRRLSSDSRGARRGPPSAFLSRLYSLLRSNRKSRRKF-----LKSLLKQFDF  141 (187)
T ss_pred             HHH--HHHHHHHHHHHhcCCccccccccchHHHHHHHHHHhcccHhHHHH-----HHHHHHHHHh
Confidence            222  34433333221  1111  1   33334445555443 4555555     5666666654

>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length

Probab=86.26  E-value=7.4  Score=31.65  Aligned_cols=140  Identities=17%  Similarity=0.186  Sum_probs=76.4

Q ss_pred             ChHHHHHhcccC-CHHHHHHHHHHHHHHhcCccchhhhhhcCCHHHHHHHhCCCChhHHHHHHHHHHHhc---cCcccHH
Q 044999          222 VIPGLVELFHIG-DWTTKLVAGNTLGVVAAHVEYITPVAEAGAIPLYAELLQGPDSTGKEISEDVFCILA---VSEANAN  297 (461)
Q Consensus       222 ~i~~L~~ll~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~---~~~~~~~  297 (461)
                      .++.|+.+++.+ ++.+|..++++|+.|..-+..+-+....+.- .-.  -...+.....   ..+.+..   ..++...
T Consensus        11 LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~~~-~~~--~~~~~~~~~~---~~l~~~~~~~~~ee~y~   84 (160)
T PF11865_consen   11 LLDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKSLD-SKS--SENSNDESTD---ISLPMMGISPSSEEYYP   84 (160)
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhcccccCC-ccc--cccccccchh---hHHhhccCCCchHHHHH
Confidence            567778888854 6899999999999998876555443322110 000  0011111111   1111111   2333333


Q ss_pred             HHH-HHHHHHhccCC-HHHHHHHHHHHHHhhCCCCchhHHhhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhc
Q 044999          298 AIA-EHLVRILREGD-NEANAAAADVLWDLAGYKHSVPVIRNSGAIPILVNLLRGENDEVREKVSGAIAQLS  367 (461)
Q Consensus       298 ~i~-~~l~~ll~~~~-~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~  367 (461)
                      .++ ..|+++|++.+ ..-...++.++.++......+-.-.-..++|.++..+++.++..++....-|+.|.
T Consensus        85 ~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~lv  156 (160)
T PF11865_consen   85 TVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPDSLREFYFQQLADLV  156 (160)
T ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence            333 78888887764 33333556666666533222112223347889999998777777777666555543

It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].

>KOG2933 consensus Uncharacterized conserved protein [Function unknown]

Probab=85.78  E-value=16  Score=32.76  Aligned_cols=145  Identities=21%  Similarity=0.188  Sum_probs=94.6

Q ss_pred             CCCcHHHhHHHHHHHhhcCCHHHHHHHHHHHHhhc--CCCchh-HHHhhHHHHHHhhccCCCCCCCcHHHHHHHHHHHHH
Q 044999            4 PDTNWEEAFNRFEQAVVSGSEALQVKALTKLARVS--KFAPQD-ILAATIPILARLLGENNFSGNLTRSIQQAAAYCLKQ   80 (461)
Q Consensus         4 ~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~la--~~~~~~-~l~~~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~   80 (461)
                      |..+-+..+......++++|=..+.-++..+..|+  +++.-. .+.++|-.+++-++.      ....+-+.|+.++..
T Consensus        82 ~fd~p~~al~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~~vii~vvkslKN------lRS~VsraA~~t~~d  155 (334)
T KOG2933|consen   82 PFDDPEAALKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLHEVIIAVVKSLKN------LRSAVSRAACMTLAD  155 (334)
T ss_pred             ccCcHHHHHHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcC------hHHHHHHHHHHHHHH
Confidence            44456777787888899999999999999999999  554433 344488888888875      334466678899998


Q ss_pred             HHhcCCchhHHHHHhcCCHHHHHhc-CC---CCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhcCCChHHH
Q 044999           81 IASQADGALATEIGQSGVINSVLRL-FP---QSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLNSCNDGTR  156 (461)
Q Consensus        81 l~~~~~~~~~~~~~~~~~l~~L~~l-l~---~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~  156 (461)
                      +...  ...  .+.+  .+..++.. +.   .++.-++..+-.+|..+..+-...       -.++.|+..+.+.++.++
T Consensus       156 ifs~--ln~--~i~~--~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~-------~~L~~L~~~~~~~n~r~r  222 (334)
T KOG2933|consen  156 IFSS--LNN--SIDQ--ELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQ-------KLLRKLIPILQHSNPRVR  222 (334)
T ss_pred             HHHH--HHH--HHHH--HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccChH-------HHHHHHHHHHhhhchhhh
Confidence            8873  211  1111  22333332 22   234456777777887777533211       135567777888888888


Q ss_pred             HHHHHHHHHhh
Q 044999          157 RYLLEILSALA  167 (461)
Q Consensus       157 ~~a~~~L~~l~  167 (461)
                      ..++....+..
T Consensus       223 ~~a~~~~~~~v  233 (334)
T KOG2933|consen  223 AKAALCFSRCV  233 (334)
T ss_pred             hhhhccccccc
Confidence            88877665543

>KOG2933 consensus Uncharacterized conserved protein [Function unknown]

Probab=85.01  E-value=12  Score=33.53  Aligned_cols=137  Identities=15%  Similarity=0.090  Sum_probs=90.8

Q ss_pred             HHHHHHHhcCCChHHHHHHHHHHHHhh-CChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCchh-HHHHH
Q 044999          141 LEIVIDLLNSCNDGTRRYLLEILSALA-LLREVRRVLICLGGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRA-RRLLV  218 (461)
Q Consensus       141 i~~L~~ll~~~~~~~~~~a~~~L~~l~-~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~-~~~~~  218 (461)
                      +...+..|.+.+......++..+..++ .+++........ .+..+++-+++....+-..|+.++..+...... ...  
T Consensus        90 l~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~~-vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~--  166 (334)
T KOG2933|consen   90 LKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLHE-VIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQ--  166 (334)
T ss_pred             HHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHHH-HHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence            445666778888888889999999888 555544443333 566778888888889999999999888766555 222  


Q ss_pred             hcCChHHHH-Hhcc---cCCHHHHHHHHHHHHHHhcCccchhhhhhcCCHHHHHHHhCCCChhHHHHHHHHHHHh
Q 044999          219 ELGVIPGLV-ELFH---IGDWTTKLVAGNTLGVVAAHVEYITPVAEAGAIPLYAELLQGPDSTGKEISEDVFCIL  289 (461)
Q Consensus       219 ~~~~i~~L~-~ll~---~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l  289 (461)
                         -...++ .++.   .++.-+++.|-.+|..+..+..-.      .+++.|+..++..++.++..++.++.+.
T Consensus       167 ---~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~------~~L~~L~~~~~~~n~r~r~~a~~~~~~~  232 (334)
T KOG2933|consen  167 ---ELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQ------KLLRKLIPILQHSNPRVRAKAALCFSRC  232 (334)
T ss_pred             ---HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccChH------HHHHHHHHHHhhhchhhhhhhhcccccc
Confidence               122222 2333   344567888888888877652211      2356777777777888877666655544

>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein)

Probab=84.98  E-value=6.8  Score=31.16  Aligned_cols=71  Identities=14%  Similarity=0.062  Sum_probs=59.1

Q ss_pred             CHHHHHHHhcCCChHHHHHHHHHHHHhhC--ChHHHHHHHhcCCHHHHHHHHcC-CCHHHHHHHHHHHHHhhcC
Q 044999          140 GLEIVIDLLNSCNDGTRRYLLEILSALAL--LREVRRVLICLGGLRYLVEAVSF-GSMVSRERACQAIGLLAVT  210 (461)
Q Consensus       140 ~i~~L~~ll~~~~~~~~~~a~~~L~~l~~--~~~~~~~~~~~~~l~~l~~~l~~-~~~~~~~~a~~~L~~l~~~  210 (461)
                      ++..|.+-+.+.++.++..|+..|-.+..  .......+...+++..|..++.. .+..++...+..+...+..
T Consensus        38 a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~  111 (144)
T cd03568          38 CLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADE  111 (144)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHH
Confidence            35567777888999999999999999983  45678888888999999999988 5889999999988877543

Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.

>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting)

Probab=84.93  E-value=4  Score=32.40  Aligned_cols=74  Identities=15%  Similarity=0.066  Sum_probs=60.9

Q ss_pred             CCHHHHHHhhcCCCHHHHHHHHHHHHHhcC--ChhhHHHHHhCCChHHHHHhcc-CCCHHHHHHHHHHHHHhcCCCc
Q 044999          339 GAIPILVNLLRGENDEVREKVSGAIAQLSY--NEADRVALADAGAVPIMIELLH-DESEELRDNAAESLINFSEDPL  412 (461)
Q Consensus       339 g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~--~~~~~~~~~~~~~i~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~~  412 (461)
                      .++..|.+-+.++++.++..|+..|-.+..  .......+.+.+.+..|.+++. ..++.++..+...+...+....
T Consensus        41 ~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~  117 (142)
T cd03569          41 YAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWALAFR  117 (142)
T ss_pred             HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHHhC
Confidence            356678888899999999999998888888  3556777888888999999885 5788999999999998875443

The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.

>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule)

Probab=84.34  E-value=6  Score=31.03  Aligned_cols=74  Identities=15%  Similarity=0.146  Sum_probs=59.4

Q ss_pred             CHHHHHHhhcCCCHHHHHHHHHHHHHhcC--ChhhHHHHHhCCChHHHHHhccC---CCHHHHHHHHHHHHHhcCCCcc
Q 044999          340 AIPILVNLLRGENDEVREKVSGAIAQLSY--NEADRVALADAGAVPIMIELLHD---ESEELRDNAAESLINFSEDPLQ  413 (461)
Q Consensus       340 ~i~~L~~ll~~~~~~v~~~a~~~L~~l~~--~~~~~~~~~~~~~i~~L~~ll~~---~~~~~~~~a~~~L~~l~~~~~~  413 (461)
                      ++..|.+-++++++.++..|+.+|-.+..  .+..+..+.+...+..|+.++..   .++.++..+...+.+......+
T Consensus        38 a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~f~~  116 (133)
T cd03561          38 AARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSESFGG  116 (133)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence            45668888899999999999999999888  34466777776778889998854   5889999999999988765443

It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me

>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane

Probab=83.83  E-value=39  Score=31.88  Aligned_cols=232  Identities=13%  Similarity=0.105  Sum_probs=114.6

Q ss_pred             HHHHHHHHHHHHhh-CChHHHHHHHhcCCHHHHHHHHcCC-----CHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHH
Q 044999          154 GTRRYLLEILSALA-LLREVRRVLICLGGLRYLVEAVSFG-----SMVSRERACQAIGLLAVTGRARRLLVELGVIPGLV  227 (461)
Q Consensus       154 ~~~~~a~~~L~~l~-~~~~~~~~~~~~~~l~~l~~~l~~~-----~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~  227 (461)
                      .++..++..+...+ ...+.-..++. ..+..+.++|..-     ...+...++..|..++.....+..+...+.++.++
T Consensus       111 kvK~~i~~~~~ly~~kY~e~f~~~l~-~fv~~vw~lL~~~~~~~~~D~lv~~al~FL~~v~~~~~~~~lf~~~~~L~~Ii  189 (370)
T PF08506_consen  111 KVKAWICENLNLYAEKYEEEFEPFLP-TFVQAVWNLLTKISQQPKYDILVSKALQFLSSVAESPHHKNLFENKPHLQQII  189 (370)
T ss_dssp             HHHHHHHHHHHHHHHH-HHHHHHHHH-HHHHHHHHHHTC--SSGGGHHHHHHHHHHHHHHHTSHHHHTTT-SHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHcchhHHHHhCCHHHHHHHH
Confidence            45555666665555 22222222211 2344444444321     23455566666666554432222222222222222


Q ss_pred             HhcccCCHHHHHHHHHHHHHHhcCccchhhhhhcCCHHHHHHHhCCCC-hhHHHHHHHHHHHhccCccc-HHHHH-HHHH
Q 044999          228 ELFHIGDWTTKLVAGNTLGVVAAHVEYITPVAEAGAIPLYAELLQGPD-STGKEISEDVFCILAVSEAN-ANAIA-EHLV  304 (461)
Q Consensus       228 ~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~ll~~~~-~~~~~~a~~~L~~l~~~~~~-~~~i~-~~l~  304 (461)
                      +-+             ++-|++..++..+ +.+..-.+-+-.-+...+ ..-|..|+..+..|+..-+. ...+. ..+-
T Consensus       190 e~V-------------I~Pnl~~~e~D~E-lfEddP~EYIrrd~e~sd~~TrR~AA~dfl~~L~~~~~~~v~~i~~~~i~  255 (370)
T PF08506_consen  190 EKV-------------IFPNLCLREEDEE-LFEDDPEEYIRRDLEGSDSDTRRRAACDFLRSLCKKFEKQVTSILMQYIQ  255 (370)
T ss_dssp             HHT-------------HHHHHS--HHHHH-HHHHSHHHHHHHHSCSS---SHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHh-------------ccCccCCCHHHHH-HHccCHHHHHHhhccccccCCcHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            211             3445554433222 223332333333343333 34566777888888644222 12222 4444


Q ss_pred             HHhc------cCCHHHHHHHHHHHHHhhCCCCc-------------hhHHhhcCCHHHHHHhhcCCCHHHHHHHHHHHHH
Q 044999          305 RILR------EGDNEANAAAADVLWDLAGYKHS-------------VPVIRNSGAIPILVNLLRGENDEVREKVSGAIAQ  365 (461)
Q Consensus       305 ~ll~------~~~~~~~~~a~~~L~~l~~~~~~-------------~~~l~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~  365 (461)
                      .++.      +.++..+..|+..+..++.....             ...+....++|.|. --.+..|-++..|++.+..
T Consensus       256 ~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~~Ff~~~v~peL~-~~~~~~piLka~aik~~~~  334 (370)
T PF08506_consen  256 QLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVDVVDFFSQHVLPELQ-PDVNSHPILKADAIKFLYT  334 (370)
T ss_dssp             HHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HHHHHHHHTCHHHH--SS-S-HHHHHHHHHHHHH
T ss_pred             HHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCcccccccccHHHHHHHHhHHHhc-ccCCCCcchHHHHHHHHHH
Confidence            4443      34688899999999999954321             22333444455554 1224567788899988887


Q ss_pred             hcCChhhHHHHHhCCChHHHHHhccCCCHHHHHHHHHHH
Q 044999          366 LSYNEADRVALADAGAVPIMIELLHDESEELRDNAAESL  404 (461)
Q Consensus       366 l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L  404 (461)
                      .-.. -.++.+..  ++|.++..+.+++.-+...|+.++
T Consensus       335 Fr~~-l~~~~l~~--~~~~l~~~L~~~~~vv~tyAA~~i  370 (370)
T PF08506_consen  335 FRNQ-LPKEQLLQ--IFPLLVNHLQSSSYVVHTYAAIAI  370 (370)
T ss_dssp             HGGG-S-HHHHHH--HHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred             HHhh-CCHHHHHH--HHHHHHHHhCCCCcchhhhhhhhC
Confidence            7761 11233333  689999999999999999888764

Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.

>PF08167 RIX1: rRNA processing/ribosome biogenesis

Probab=83.73  E-value=14  Score=30.32  Aligned_cols=99  Identities=11%  Similarity=0.129  Sum_probs=72.1

Q ss_pred             CCHHHHHHhhcCCCHHHHHHHHHHHHHhcCChhhHHHHHhCCC--hHHHHHhccC-CCHHHHHHHHHHHHHhcCCCcchH
Q 044999          339 GAIPILVNLLRGENDEVREKVSGAIAQLSYNEADRVALADAGA--VPIMIELLHD-ESEELRDNAAESLINFSEDPLQHE  415 (461)
Q Consensus       339 g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~--i~~L~~ll~~-~~~~~~~~a~~~L~~l~~~~~~~~  415 (461)
                      ..+..+..+++++++.-+-.++..+...+..-. .+.+.+++.  +..|+..++. +.+.+...++.++..+...-.+..
T Consensus        25 ~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~-~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p  103 (165)
T PF08167_consen   25 KLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCS-WEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKP  103 (165)
T ss_pred             HHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCC
Confidence            456678889999888888888877777775211 345545443  6777888855 567788899999999876666666


Q ss_pred             HHHHhhCCchHHhHHHHHHHhhh
Q 044999          416 RISEAIGIPSFQSMQSRLTRIRA  438 (461)
Q Consensus       416 ~l~~~~~~~~~~~l~~~l~~~~~  438 (461)
                      .+.+....+.+..+++.+.++.+
T Consensus       104 ~l~Rei~tp~l~~~i~~ll~l~~  126 (165)
T PF08167_consen  104 TLTREIATPNLPKFIQSLLQLLQ  126 (165)
T ss_pred             chHHHHhhccHHHHHHHHHHHHh
Confidence            67766678888888888877775

>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length

Probab=83.64  E-value=29  Score=30.29  Aligned_cols=192  Identities=16%  Similarity=0.079  Sum_probs=110.2

Q ss_pred             HhcCCChHHHHHHHHHHHHhhCCh-HHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCchhHHHHHhcCChHH
Q 044999          147 LLNSCNDGTRRYLLEILSALALLR-EVRRVLICLGGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRARRLLVELGVIPG  225 (461)
Q Consensus       147 ll~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~  225 (461)
                      +-+..+++.+...+..|..++.+. .....     +++.+..+...+..+.+..+.+.+..+....+..-     +.++.
T Consensus         9 l~~~~~~~~~~~~L~~L~~l~~~~~~~~~~-----v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f-----~~L~~   78 (234)
T PF12530_consen    9 LGKISDPELQLPLLEALPSLACHKNVCVPP-----VLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHF-----PFLQP   78 (234)
T ss_pred             hcCCCChHHHHHHHHHHHHHhccCccchhH-----HHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHH-----HHHHH
Confidence            556678899999999999999665 44333     35566777777777777778888888766554421     22333


Q ss_pred             HHHh-----c---c--cCCHHHHHHHHHHHHHHhcCccchhhhhhcCCHHHHHHHh-CCCChhHHHHHHHHHHHhccCcc
Q 044999          226 LVEL-----F---H--IGDWTTKLVAGNTLGVVAAHVEYITPVAEAGAIPLYAELL-QGPDSTGKEISEDVFCILAVSEA  294 (461)
Q Consensus       226 L~~l-----l---~--~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~ll-~~~~~~~~~~a~~~L~~l~~~~~  294 (461)
                      ++..     .   .  +...+.......++..++...+.+    -...++.+..++ +..++.++..++..|..+...+-
T Consensus        79 ~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~~----g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc~~~v  154 (234)
T PF12530_consen   79 LLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPDH----GVDLLPLLSGCLNQSCDEVAQALALEALAPLCEAEV  154 (234)
T ss_pred             HHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChhh----HHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhh
Confidence            3333     1   1  122344444456777777762221    122477888888 67788888989999888873221


Q ss_pred             cHHHHH-HHHHHHhccC-CHHHHHHHHHHHHHhhCC--CCchhHHhhcCCHHHHHHhhcCCC
Q 044999          295 NANAIA-EHLVRILREG-DNEANAAAADVLWDLAGY--KHSVPVIRNSGAIPILVNLLRGEN  352 (461)
Q Consensus       295 ~~~~i~-~~l~~ll~~~-~~~~~~~a~~~L~~l~~~--~~~~~~l~~~g~i~~L~~ll~~~~  352 (461)
                      ..-.-. ..+..-+..+ .|.+...-+..+..+...  +...-......++..+.++....+
T Consensus       155 vd~~s~w~vl~~~l~~~~rp~v~~~l~~l~~l~~~~~~~~e~~~~~~~~~l~~lW~~~~~~~  216 (234)
T PF12530_consen  155 VDFYSAWKVLQKKLSLDYRPLVLKSLCSLFALVPQGAVDSEEYEELKRQILQLLWEYTSSSD  216 (234)
T ss_pred             ccHHHHHHHHHHhcCCccchHHHHHHHHHHHHhccccCChhhhhHHHHHHHHHHHhhccccc
Confidence            110000 4455544333 455555544444444432  222222234456666666666544

>PF13251 DUF4042: Domain of unknown function (DUF4042)

Probab=83.63  E-value=23  Score=29.51  Aligned_cols=102  Identities=16%  Similarity=0.166  Sum_probs=67.3

Q ss_pred             HHHHHhCCCChhHHHHHHHHHHHhccCccc------------------HHHHH-------HHHHHHhccC-CHHHHHHHH
Q 044999          266 LYAELLQGPDSTGKEISEDVFCILAVSEAN------------------ANAIA-------EHLVRILREG-DNEANAAAA  319 (461)
Q Consensus       266 ~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~------------------~~~i~-------~~l~~ll~~~-~~~~~~~a~  319 (461)
                      .+.-++.++++.+|..|+.++..|-.+...                  ...+.       ..|+..+..+ ++.+....+
T Consensus        44 Llt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~l  123 (182)
T PF13251_consen   44 LLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEESKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLL  123 (182)
T ss_pred             hhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHH
Confidence            344456788999999999998877332210                  01111       5666666544 678888999


Q ss_pred             HHHHHhhCCCCc---hhHHhhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcC
Q 044999          320 DVLWDLAGYKHS---VPVIRNSGAIPILVNLLRGENDEVREKVSGAIAQLSY  368 (461)
Q Consensus       320 ~~L~~l~~~~~~---~~~l~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~  368 (461)
                      +++..+..+...   ...+.. ..+..+..++.+.++.++..++.+++.+..
T Consensus       124 K~la~Lv~~tPY~rL~~~ll~-~~v~~v~~~l~~~d~~v~v~~l~~~~~l~s  174 (182)
T PF13251_consen  124 KCLAVLVQATPYHRLPPGLLT-EVVTQVRPLLRHRDPNVRVAALSCLGALLS  174 (182)
T ss_pred             HHHHHHHccCChhhcCHhHHH-HHHHHHHHHHhcCCCcHHHHHHHHHHHHHc
Confidence            999999875332   222221 234555666778889999999988888876

>PF08167 RIX1: rRNA processing/ribosome biogenesis

Probab=83.34  E-value=23  Score=28.98  Aligned_cols=113  Identities=19%  Similarity=0.213  Sum_probs=70.5

Q ss_pred             CcHHHhHHHHHHHhhcCCHHHHHHHHHHHHhhcCCCchhHHHh----hHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHH
Q 044999            6 TNWEEAFNRFEQAVVSGSEALQVKALTKLARVSKFAPQDILAA----TIPILARLLGENNFSGNLTRSIQQAAAYCLKQI   81 (461)
Q Consensus         6 ~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~la~~~~~~~l~~----~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l   81 (461)
                      ..+......+.+++++.++..|-.++..+.........+.+.+    .+..++..|+.    . +.+.....++.+|..+
T Consensus        21 ~~l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~----~-~~~~~~~~ai~~L~~l   95 (165)
T PF08167_consen   21 SALHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEK----P-DPPSVLEAAIITLTRL   95 (165)
T ss_pred             HHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcC----C-CCHHHHHHHHHHHHHH
Confidence            3466777889999999999999888888887773333444533    89999999996    3 4455666688888877


Q ss_pred             Hhc--CCchhHHHHHhc---CCHHHHHhcCCCCCHHHHHHHHHHHHHHh
Q 044999           82 ASQ--ADGALATEIGQS---GVINSVLRLFPQSDDSFRTVLVKCLRVFV  125 (461)
Q Consensus        82 ~~~--~~~~~~~~~~~~---~~l~~L~~ll~~~~~~~~~~~~~~l~~l~  125 (461)
                      ...  +.++..+++.-.   ++++.++++++.  ......+..++..+.
T Consensus        96 ~~~~~~~p~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll  142 (165)
T PF08167_consen   96 FDLIRGKPTLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLL  142 (165)
T ss_pred             HHHhcCCCchHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHH
Confidence            763  134444444333   234444555543  233444444444443

>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins

Probab=83.12  E-value=4.9  Score=31.74  Aligned_cols=71  Identities=13%  Similarity=0.182  Sum_probs=59.1

Q ss_pred             CHHHHHHhhcCCCHHHHHHHHHHHHHhcC--ChhhHHHHHhCCChHHHHHhccC------CCHHHHHHHHHHHHHhcCC
Q 044999          340 AIPILVNLLRGENDEVREKVSGAIAQLSY--NEADRVALADAGAVPIMIELLHD------ESEELRDNAAESLINFSED  410 (461)
Q Consensus       340 ~i~~L~~ll~~~~~~v~~~a~~~L~~l~~--~~~~~~~~~~~~~i~~L~~ll~~------~~~~~~~~a~~~L~~l~~~  410 (461)
                      ++..|.+-+.++++.++..|+..|-.+..  .+..+..+.+.+.+..|++++..      .++.|+..+...+...+..
T Consensus        39 a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~  117 (139)
T cd03567          39 AVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTLE  117 (139)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHH
Confidence            56678888999999999999999988888  45677888888889999999953      5789999999999887644

The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.

>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]

Probab=82.98  E-value=59  Score=33.26  Aligned_cols=322  Identities=13%  Similarity=0.071  Sum_probs=167.2

Q ss_pred             HHhhcCCHHHHHHHHHHHHhhc-CCCchhHHHhhHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHhcCCchhHHHHHh
Q 044999           17 QAVVSGSEALQVKALTKLARVS-KFAPQDILAATIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQADGALATEIGQ   95 (461)
Q Consensus        17 ~ll~~~~~~~~~~a~~~l~~la-~~~~~~~l~~~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~   95 (461)
                      ....+..--.+.+|+..+..+. +-.....+.++.+.....++.      ++..++..|+.+|..+..  +++....+.+
T Consensus       467 P~f~s~ygfL~Srace~is~~eeDfkd~~ill~aye~t~ncl~n------n~lpv~ieAalAlq~fi~--~~q~h~k~sa  538 (970)
T COG5656         467 PAFRSNYGFLKSRACEFISTIEEDFKDNGILLEAYENTHNCLKN------NHLPVMIEAALALQFFIF--NEQSHEKFSA  538 (970)
T ss_pred             HhhcCcccchHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHhc------CCcchhhhHHHHHHHHHh--chhhhHHHHh
Confidence            3345556677888899888887 554455555577777888875      445688889999999998  6676666655


Q ss_pred             c--CCHHHHHhcCCCCCHHHHHHHHHHHH-HHhc----cChhhHHHHHHcCCHHHHHHHhcCCC------hHHHHHHHHH
Q 044999           96 S--GVINSVLRLFPQSDDSFRTVLVKCLR-VFVT----FGNENRVIVARNGGLEIVIDLLNSCN------DGTRRYLLEI  162 (461)
Q Consensus        96 ~--~~l~~L~~ll~~~~~~~~~~~~~~l~-~l~~----~~~~~~~~~~~~g~i~~L~~ll~~~~------~~~~~~a~~~  162 (461)
                      +  +.++.|+.+-+.-+.++...+...+. ..+.    -.++....+++ ..+..-..++.+++      .+-+..|...
T Consensus       539 hVp~tmekLLsLSn~feiD~LS~vMe~fVe~fseELspfa~eLa~~Lv~-qFlkiaq~l~ens~d~~s~vDDKqmaasGi  617 (970)
T COG5656         539 HVPETMEKLLSLSNTFEIDPLSMVMESFVEYFSEELSPFAPELAGSLVR-QFLKIAQSLLENSSDTSSVVDDKQMAASGI  617 (970)
T ss_pred             hhhHHHHHHHHhcccccchHHHHHHHHHHHHhHHhhchhHHHHHHHHHH-HHHHHHHHHHcCCccccccccHHHHHHHHH
Confidence            4  44666666665555554444443333 2222    11111111111 12223333444331      1334455555


Q ss_pred             HHHhh---CChHHHHHHH---hcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhcccCCH-
Q 044999          163 LSALA---LLREVRRVLI---CLGGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRARRLLVELGVIPGLVELFHIGDW-  235 (461)
Q Consensus       163 L~~l~---~~~~~~~~~~---~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~-  235 (461)
                      |..+.   ..-+++..+.   +....|.+--.+.+.-.+.-..|+..+-+.+.....-. -..-|+.+.+.+++.++.. 
T Consensus       618 L~T~~smiLSlen~p~vLk~le~slypvi~Filkn~i~dfy~Ea~dildg~tf~skeI~-pimwgi~Ell~~~l~~~~t~  696 (970)
T COG5656         618 LRTIESMILSLENRPLVLKYLEVSLYPVISFILKNEISDFYQEALDILDGYTFMSKEIE-PIMWGIFELLLNLLIDEITA  696 (970)
T ss_pred             HHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhHHHHHhh-hhhhHHHHHHHhcccccchh
Confidence            54433   2222222222   22344544455566666777888888877654443311 1113455666666665553 


Q ss_pred             HHHHHHHHHHHHHhcCccchhhhhhcCC-----HHHHHHHhCCCCh--hHHHHHHHHHHHhcc--CcccHHHHHHHHHHH
Q 044999          236 TTKLVAGNTLGVVAAHVEYITPVAEAGA-----IPLYAELLQGPDS--TGKEISEDVFCILAV--SEANANAIAEHLVRI  306 (461)
Q Consensus       236 ~~~~~a~~~L~~l~~~~~~~~~~~~~g~-----i~~L~~ll~~~~~--~~~~~a~~~L~~l~~--~~~~~~~i~~~l~~l  306 (461)
                      ...+.+.-++.|+...  .+..+.+.|.     .......+.+++.  +-...++..+..+..  .++--.+-.|.+.+.
T Consensus       697 ~y~ee~~~al~nfity--G~~ef~~~~~y~~i~~eI~~~~l~sE~n~l~D~~~vc~i~e~l~Ln~rd~Ll~qy~plfi~v  774 (970)
T COG5656         697 VYSEEVADALDNFITY--GKTEFMDAGIYGSICSEISKLCLCSEENFLEDFIGVCRIIESLILNIRDELLSQYLPLFISV  774 (970)
T ss_pred             hhHHHHHHHHHHHHHh--CccccccccchhHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHHHHccchhHHhhhHHHHHH
Confidence            5566777788887653  2222333322     2223333444433  445566666665532  222222222333222


Q ss_pred             hc------cCCHHHHHHHHH-HHHHhhCCC-CchhHHhhcCCHHHHHHhhcC
Q 044999          307 LR------EGDNEANAAAAD-VLWDLAGYK-HSVPVIRNSGAIPILVNLLRG  350 (461)
Q Consensus       307 l~------~~~~~~~~~a~~-~L~~l~~~~-~~~~~l~~~g~i~~L~~ll~~  350 (461)
                      ..      +..+-....+.. ++.|+-..| +..+.+-+.|......+..-+
T Consensus       775 ags~l~~~dElg~~sv~aleliinnli~~P~eTLqiLe~qg~l~~FF~~wf~  826 (970)
T COG5656         775 AGSGLKMIDELGPASVYALELIINNLILRPKETLQILEEQGYLQSFFEKWFS  826 (970)
T ss_pred             HhhhhhccccccchhhhHHHHHHHHHhcChHHHHHHHHHcCcHHHHHHHHHh
Confidence            22      222333444444 445555554 455666677887776655443

>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []

Probab=82.49  E-value=42  Score=31.18  Aligned_cols=156  Identities=12%  Similarity=0.056  Sum_probs=110.3

Q ss_pred             HHHHHhcCCCCCHHHHHHHHHHHHHHhc-cChhhHHHHH-HcCC-HHHHHHHhcCC-----C--------hHHHHHHHHH
Q 044999           99 INSVLRLFPQSDDSFRTVLVKCLRVFVT-FGNENRVIVA-RNGG-LEIVIDLLNSC-----N--------DGTRRYLLEI  162 (461)
Q Consensus        99 l~~L~~ll~~~~~~~~~~~~~~l~~l~~-~~~~~~~~~~-~~g~-i~~L~~ll~~~-----~--------~~~~~~a~~~  162 (461)
                      +..+.+.|++..+.....+...+..++. .+......+. ..+. .+.+.+++...     +        +.+|...+..
T Consensus        58 ~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F  137 (330)
T PF11707_consen   58 LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRF  137 (330)
T ss_pred             HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHHH
Confidence            6788899998888877777777778887 5544444443 3332 33455555321     1        2788888887


Q ss_pred             HHHhh--CChHHHHHHHh-cCCHHHHHHHHcCCCHHHHHHHHHHHHH-hhcCchh----HHHHHhcCChHHHHHhcccCC
Q 044999          163 LSALA--LLREVRRVLIC-LGGLRYLVEAVSFGSMVSRERACQAIGL-LAVTGRA----RRLLVELGVIPGLVELFHIGD  234 (461)
Q Consensus       163 L~~l~--~~~~~~~~~~~-~~~l~~l~~~l~~~~~~~~~~a~~~L~~-l~~~~~~----~~~~~~~~~i~~L~~ll~~~~  234 (461)
                      +..+.  .++..+..+.. .+.+..+++.+..++.++....+.++.. +......    +..+.....+..|..+....+
T Consensus       138 ~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~~Ly~~~~  217 (330)
T PF11707_consen  138 WLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQLASLYSRDG  217 (330)
T ss_pred             HHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHHHHHHhcccC
Confidence            77766  56667777776 4578888999988888999999998885 4443322    445666778889999888766


Q ss_pred             H----HHHHHHHHHHHHHhcCccc
Q 044999          235 W----TTKLVAGNTLGVVAAHVEY  254 (461)
Q Consensus       235 ~----~~~~~a~~~L~~l~~~~~~  254 (461)
                      +    .+...+-..|..++.++..
T Consensus       218 ~~~~~~~~~~vh~fL~~lcT~p~~  241 (330)
T PF11707_consen  218 EDEKSSVADLVHEFLLALCTDPKH  241 (330)
T ss_pred             CcccchHHHHHHHHHHHHhcCCCc
Confidence            6    8888888899998876443

The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.

>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=81.08  E-value=73  Score=33.03  Aligned_cols=198  Identities=14%  Similarity=0.082  Sum_probs=110.6

Q ss_pred             HHHHHHHHHHHHhhCChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhcccC
Q 044999          154 GTRRYLLEILSALALLREVRRVLICLGGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRARRLLVELGVIPGLVELFHIG  233 (461)
Q Consensus       154 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~  233 (461)
                      .+...|+..|.+++..+.....+...+++..+.+..--++...|..              ...+.+.+.+..+=.-+...
T Consensus       308 ~Lvs~Al~FLt~V~~r~~y~~~F~~~~vl~~i~e~VvlpN~~lR~e--------------DeElFED~pleYiRRDlEGs  373 (960)
T KOG1992|consen  308 YLVSKALQFLTSVSRRPHYAELFEGENVLAQICEKVVLPNLILREE--------------DEELFEDNPLEYIRRDLEGS  373 (960)
T ss_pred             HHHHHHHHHHHHHHhhhhhHhhhcchHHHHHHHHhhcccccccchh--------------hHHHhccCHHHHHHHhcccC
Confidence            4566788888888877777777777777777776655554433322              22334445566666666655


Q ss_pred             CHH-HHHHHHHHHHHHhcCccchhhhhhcCCHHHHHHHh-CC--CChhHHHHHHHHHHHhccCcccHH------------
Q 044999          234 DWT-TKLVAGNTLGVVAAHVEYITPVAEAGAIPLYAELL-QG--PDSTGKEISEDVFCILAVSEANAN------------  297 (461)
Q Consensus       234 ~~~-~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~ll-~~--~~~~~~~~a~~~L~~l~~~~~~~~------------  297 (461)
                      |.+ -|+.|+..++.|+.+-+....-+-.+-+..++.-. .+  .++.-+..+......++.......            
T Consensus       374 DvdTRRR~a~dlvrgL~~~fe~~vt~v~~~~v~~~l~~y~~nPS~nWk~kd~aiyL~talaik~~t~~~Gvtstn~lvdv  453 (960)
T KOG1992|consen  374 DVDTRRRAAIDLVRGLCKNFEGQVTGVFSSEVQRLLDQYSKNPSGNWKKKDRAIYLVTALAIKGQTAKHGVTSTNELVDV  453 (960)
T ss_pred             CcchhHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhccCCCccccccchhhhhhHHHHhhcchhhcceeeccccccH
Confidence            554 45667888888888743332222122233333322 22  255556666666665543321111            


Q ss_pred             --HHHHHHHHHhcc----CCHHHHHHHHHHHHHhhCCCCchhHHhhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcC
Q 044999          298 --AIAEHLVRILRE----GDNEANAAAADVLWDLAGYKHSVPVIRNSGAIPILVNLLRGENDEVREKVSGAIAQLSY  368 (461)
Q Consensus       298 --~i~~~l~~ll~~----~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~  368 (461)
                        -+...+..-|.+    ..|-++..+++-+...- +.-..+.++.  .+|.+++.|..++..+...|+.++-.+-.
T Consensus       454 ~~Ff~~~ilp~L~s~~vn~~pilka~aIKy~~~FR-~ql~~~~lm~--~~p~li~~L~a~s~vvhsYAA~aiEkil~  527 (960)
T KOG1992|consen  454 VDFFANQILPDLLSPNVNEFPILKADAIKYIYTFR-NQLGKEHLMA--LLPRLIRFLEAESRVVHSYAAIAIEKLLT  527 (960)
T ss_pred             HHHHHHHhhHHhccCccccccchhhcccceeeeec-ccCChHHHHH--HHHHHHHhccCcchHHHHHHHHHHHhccc
Confidence              011333333333    24555555554443332 2223333333  68899999999888888888887776655

>KOG1848 consensus Uncharacterized conserved protein [Function unknown]

Probab=80.59  E-value=52  Score=36.14  Aligned_cols=73  Identities=7%  Similarity=0.004  Sum_probs=36.4

Q ss_pred             cHHHhHHHHHHHhhcCCHHHHHHHHHHHHhhc--CCCchhH-HHh---hHHHHHHhhccCCCCCCCcHHHHHHHHHHHHH
Q 044999            7 NWEEAFNRFEQAVVSGSEALQVKALTKLARVS--KFAPQDI-LAA---TIPILARLLGENNFSGNLTRSIQQAAAYCLKQ   80 (461)
Q Consensus         7 ~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~la--~~~~~~~-l~~---~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~   80 (461)
                      .|..+.+.|.+..+.--...+..++.++.+.+  +...+.. ..+   .+.....+...    .+...++.+....++.+
T Consensus       793 ~~~naa~~l~t~~n~vl~s~~~~~asals~da~~dv~sk~ti~~es~~~~l~sl~v~~~----s~~~~evr~~sl~~l~s  868 (1610)
T KOG1848|consen  793 KIINAAPELRTRANNVLASILVDVASALSNDASPDVYSKQTIFFESLGMLLPSLEVSDN----SSRGVEVRISSLEALVS  868 (1610)
T ss_pred             HHHHhHHHHHHHHHHHHHHHHhhhhhhhhcccccchhccceeeHhhhHHHHHHHHHHHh----cCccceeeHHHHHHHHH
Confidence            45666666666666655555566666666666  2222222 222   22222222222    12223355666677777


Q ss_pred             HHh
Q 044999           81 IAS   83 (461)
Q Consensus        81 l~~   83 (461)
                      +.+
T Consensus       869 ile  871 (1610)
T KOG1848|consen  869 ILE  871 (1610)
T ss_pred             HHh
Confidence            776

>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins

Probab=80.29  E-value=13  Score=29.33  Aligned_cols=70  Identities=13%  Similarity=0.039  Sum_probs=56.9

Q ss_pred             CHHHHHHHhcCCChHHHHHHHHHHHHhhC--ChHHHHHHHhcCCHHHHHHHHcC------CCHHHHHHHHHHHHHhhc
Q 044999          140 GLEIVIDLLNSCNDGTRRYLLEILSALAL--LREVRRVLICLGGLRYLVEAVSF------GSMVSRERACQAIGLLAV  209 (461)
Q Consensus       140 ~i~~L~~ll~~~~~~~~~~a~~~L~~l~~--~~~~~~~~~~~~~l~~l~~~l~~------~~~~~~~~a~~~L~~l~~  209 (461)
                      ++..+.+-+.+.++.++..|+.+|-.+..  ...++..+...+++..+++++..      .+..++...+..+..-+.
T Consensus        39 a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~  116 (139)
T cd03567          39 AVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTL  116 (139)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence            45667788889999999999999999883  46678888888899999999963      367899988888876543

The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=80.11  E-value=59  Score=32.72  Aligned_cols=155  Identities=9%  Similarity=0.049  Sum_probs=85.5

Q ss_pred             HhcCCChHHHHHHHHHHHHhhCChHHHHHHHh----cCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCchhHHHHHhcCC
Q 044999          147 LLNSCNDGTRRYLLEILSALALLREVRRVLIC----LGGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRARRLLVELGV  222 (461)
Q Consensus       147 ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~----~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~  222 (461)
                      .+-.-....+..|+.+|+-+..+...-..+..    ...+..++..+. .++..+..++++|.|+-.++..++.+...  
T Consensus       552 ~l~~wp~~~~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~-~~~an~ll~vR~L~N~f~~~~g~~~~~s~--  628 (745)
T KOG0301|consen  552 ILLQWPVEMMFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILN-ADPANQLLVVRCLANLFSNPAGRELFMSR--  628 (745)
T ss_pred             HHhcCCHHHhhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhcccc-cchhHHHHHHHHHHHhccCHHHHHHHHHH--
Confidence            33344556777888888877755444333333    124555555554 56778889999999998886666666553  


Q ss_pred             hHHHHHhc----ccCCHHHHHHHHHHHHHHhcC--ccchhhhhhcCCHHHHHHHhCC---C--ChhHHHHHHHHHHHhcc
Q 044999          223 IPGLVELF----HIGDWTTKLVAGNTLGVVAAH--VEYITPVAEAGAIPLYAELLQG---P--DSTGKEISEDVFCILAV  291 (461)
Q Consensus       223 i~~L~~ll----~~~~~~~~~~a~~~L~~l~~~--~~~~~~~~~~g~i~~L~~ll~~---~--~~~~~~~a~~~L~~l~~  291 (461)
                      ...+...+    ..++..++........|++..  ..+-+    .+..+.+...+..   .  +-+.....+.+|.+|+.
T Consensus       629 ~~~i~~~~~~~~s~~~knl~ia~atlaln~sv~l~~~~~~----~~~~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL~t  704 (745)
T KOG0301|consen  629 LESILDPVIEASSLSNKNLQIALATLALNYSVLLIQDNEQ----LEGKEVLLSAISTLLEPVDDLEAIYRLLVALGTLMT  704 (745)
T ss_pred             HHHHhhhhhhhhcccchhHHHHHHHHHHHHHHHHHhcccc----cchHHHHHHHHHhhcccchhHHHHHHHHHHHHhhcc
Confidence            23332222    233445555544445555543  22111    3444444444432   2  23444556667778877


Q ss_pred             CcccHHHHH-----HHHHHHhc
Q 044999          292 SEANANAIA-----EHLVRILR  308 (461)
Q Consensus       292 ~~~~~~~i~-----~~l~~ll~  308 (461)
                      .+....++.     ..+++-++
T Consensus       705 ~~~~~~~~A~~~~v~sia~~~~  726 (745)
T KOG0301|consen  705 VDASVIQLAKNRSVDSIAKKLK  726 (745)
T ss_pred             ccHHHHHHHHhcCHHHHHHHHH
Confidence            776655554     44555443

>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule)

Probab=80.02  E-value=16  Score=28.61  Aligned_cols=71  Identities=15%  Similarity=-0.025  Sum_probs=57.0

Q ss_pred             HHHHHHHhcCCChHHHHHHHHHHHHhhC--ChHHHHHHHhcCCHHHHHHHHcC---CCHHHHHHHHHHHHHhhcCc
Q 044999          141 LEIVIDLLNSCNDGTRRYLLEILSALAL--LREVRRVLICLGGLRYLVEAVSF---GSMVSRERACQAIGLLAVTG  211 (461)
Q Consensus       141 i~~L~~ll~~~~~~~~~~a~~~L~~l~~--~~~~~~~~~~~~~l~~l~~~l~~---~~~~~~~~a~~~L~~l~~~~  211 (461)
                      +..|.+-+.++++.++..|+.+|-.+..  .+.+...+....++..++.++..   .+..++..++..+...+...
T Consensus        39 ~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~f  114 (133)
T cd03561          39 ARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSESF  114 (133)
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHh
Confidence            5567777888999999999999999983  34567777777888889999975   37799999999988775543

It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	461
4db9_A	210	Designed Armadillo Repeat Protein (Yiiim3aiii) Leng		4e-04
4db8_A	252	Designed Armadillo-Repeat Protein Length = 252		4e-04
4dba_A	210	Designed Armadillo Repeat Protein (Yiim3aii) Length		8e-04

>pdb|4DB9|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aiii) Length = 210

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 28/104 (26%), Positives = 59/104 (56%), Gaps = 2/104 (1%)
Query: 330 HSVPVIRNSGAIPILVNLLRGENDEVREKVSGAIAQLSYNEADRV-ALADAGAVPIMIEL 388
             +  + ++GA+P LV LL   N+++ ++   A++ ++    +++ A+ DAGA+P +++L
Sbjct: 87  EQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQL 146
Query: 389 LHDESEELRDNAAESLINF-SEDPLQHERISEAIGIPSFQSMQS 431
           L   +E++   A  +L N  S    Q + + EA   P+ + +QS
Sbjct: 147 LSSPNEQILQEALWALSNIASGGNEQKQAVKEAGAEPALEQLQS 190

>pdb|4DB8|A Chain A, Designed Armadillo-Repeat Protein Length = 252

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 49/228 (21%), Positives = 97/228 (42%), Gaps = 56/228 (24%)
Query: 217 LVELGVIPGLVELFHIGD--------WTTKLVA--GNTLGVVAAHVEYITPVAEAGAIPL 266
           +++ G +P LV+L    +        W    +A  GN         E I  V +AGA+P 
Sbjct: 50  VIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN---------EQIQAVIDAGALPA 100
Query: 267 YAELLQGPDSTGKEISEDVFCILAVSEANANAIAEHLVRILRXXXXXXXXXXXXXXXXXX 326
             +LL  P+   ++I ++    L+   +  N                             
Sbjct: 101 LVQLLSSPN---EQILQEALWALSNIASGGN----------------------------- 128
Query: 327 XYKHSVPVIRNSGAIPILVNLLRGENDEVREKVSGAIAQLSYNEADRV-ALADAGAVPIM 385
                +  + ++GA+P LV LL   N+++ ++   A++ ++    +++ A+ DAGA+P +
Sbjct: 129 ---EQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPAL 185
Query: 386 IELLHDESEELRDNAAESLINF-SEDPLQHERISEAIGIPSFQSMQSR 432
           ++LL   +E++   A  +L N  S    Q + + EA  +   + +QS 
Sbjct: 186 VQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSH 233

>pdb|4DBA|A Chain A, Designed Armadillo Repeat Protein (Yiim3aii) Length = 210

Iteration: 1
 Score = 41.6 bits (96), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 44/213 (20%), Positives = 93/213 (43%), Gaps = 38/213 (17%)
Query: 223 IPGLVELFHIGDWTTKLVAGNTLG-VVAAHVEYITPVAEAGAIPLYAELLQGPDSTGKEI 281
           +P + +  +  D   +L A      +++   E I  V +AGA+P   +LL  P+   ++I
Sbjct: 14  LPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPN---EQI 70
Query: 282 SEDVFCILAVSEANANAIAEHLVRILRXXXXXXXXXXXXXXXXXXXYKHSVPVIRNSGAI 341
            ++    L+   +  N                                  +  + ++GA+
Sbjct: 71  LQEALWALSNIASGGN--------------------------------EQIQAVIDAGAL 98
Query: 342 PILVNLLRGENDEVREKVSGAIAQLSYNEADRV-ALADAGAVPIMIELLHDESEELRDNA 400
           P LV LL   N+++ ++   A++ ++    +++ A+ DAGA+P +++LL   +E++   A
Sbjct: 99  PALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEA 158
Query: 401 AESLINF-SEDPLQHERISEAIGIPSFQSMQSR 432
             +L N  S    Q + + EA  +   + +QS 
Sbjct: 159 LWALSNIASGGNEQKQAVKEAGALEKLEQLQSH 191

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	461
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	3e-43
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	3e-42
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	1e-36
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	1e-34
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	6e-31
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	5e-17
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	9e-43
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	7e-41
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	7e-40
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	5e-36
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	1e-15
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	2e-42
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	1e-39
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	2e-36
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	1e-35
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	2e-32
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	4e-29
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	3e-32
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	2e-15
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	5e-09
3nmz_A	458	APC variant protein; protein-protein complex, arma	1e-30
3nmz_A	458	APC variant protein; protein-protein complex, arma	6e-16
3nmz_A	458	APC variant protein; protein-protein complex, arma	6e-15
3nmz_A	458	APC variant protein; protein-protein complex, arma	9e-15
3nmz_A	458	APC variant protein; protein-protein complex, arma	3e-06
3nmz_A	458	APC variant protein; protein-protein complex, arma	3e-05
3nmz_A	458	APC variant protein; protein-protein complex, arma	3e-05
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	3e-30
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	3e-25
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	5e-21
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	4e-18
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	2e-12
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	5e-30
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	1e-25
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	8e-22
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	3e-14
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	3e-12
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	2e-29
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	7e-28
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	2e-23
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	8e-22
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	3e-28
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	8e-26
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	4e-26
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	1e-19
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	1e-17
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	5e-07
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	6e-23
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	2e-21
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	2e-12
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	1e-18
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	7e-16
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	1e-13
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	1e-16
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	3e-14
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	3e-10
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	8e-15
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	7e-10
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	5e-09
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	2e-07
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	3e-14
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	5e-07
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	8e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-05
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	2e-09
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	2e-09
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	7e-09
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	1e-06
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	6e-08
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	5e-06
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	2e-07
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	9e-05
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	3e-07
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	7e-06
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	3e-07
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	4e-06
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	4e-04
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	5e-07
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	3e-06
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	5e-05
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	4e-04
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	1e-05
3oc3_A	800	Helicase MOT1, MOT1; regulation of transcription,	2e-04
3grl_A	651	General vesicular transport factor P115; vesicle t	2e-04
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	4e-04
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	5e-04

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score =  161 bits (408), Expect = 3e-43
 Identities = 75/441 (17%), Positives = 161/441 (36%), Gaps = 47/441 (10%)

Query: 28  VKALTKLARVSKFAPQDILAATIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQADG 87
              L  L+   +       +  IP L  +LG          S+   A   L  +    +G
Sbjct: 214 SGTLHNLSHHREGLLAIFKSGGIPALVNMLGSPV------DSVLFHAITTLHNLLLHQEG 267

Query: 88  ALATEIGQSGVINSVLRLFPQSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDL 147
           A    +  +G +  ++ L  +++  F  +   CL++      E+++I+  +GG + ++++
Sbjct: 268 A-KMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNI 326

Query: 148 LNSCND-GTRRYLLEILSALALLREVRRVLICLGGLRYLVEAVSFGSMVSRERACQAIGL 206
           + +            +L  L++    +  ++  GG++ L   ++  S    +     +  
Sbjct: 327 MRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRN 386

Query: 207 LAVTGRARRLLVELGVIPGLVELFHIGDWTTKLVAGNTLGVVAAH-VEYITPVAEAGAIP 265
           L+     +      G++  LV+L    D      A   L  +  +  +    V + G I 
Sbjct: 387 LSDAATKQ--EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIE 444

Query: 266 LYAELLQGPDSTGKEISEDVFCILA-------VSEANANAIAEH-----LVRILREGDNE 313
                +       ++I+E   C L         +E   NA+  H     +V++L    + 
Sbjct: 445 ALVRTVL-RAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHW 503

Query: 314 AN-AAAADVLWDLAGYKHSVPVIRNSGAIPILVNLLRGENDEVR---------------- 356
               A   ++ +LA    +   +R  GAIP LV LL   + + +                
Sbjct: 504 PLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGV 563

Query: 357 ------EKVSGAIAQLSYNEADRVALADAGAVPIMIELLHDESEELRDNAAESLINFSED 410
                 E  +GA+  L+ +  +R+ +     +P+ ++LL+   E ++  AA  L   ++D
Sbjct: 564 RMEEIVEACTGALHILARDIHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 623

Query: 411 PLQHERISEAIGIPSFQSMQS 431
               E I           +  
Sbjct: 624 KEAAEAIEAEGATAPLTELLH 644

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score =  158 bits (401), Expect = 3e-42
 Identities = 79/443 (17%), Positives = 151/443 (34%), Gaps = 50/443 (11%)

Query: 21  SGSEALQ---VKALTKLARVSKFAPQDILAA-TIPILARLLGENNFSGNLTRSIQQAAAY 76
           S  +++    +  L  L    + A   +  A  +  +  LL + N               
Sbjct: 245 SPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTN------VKFLAITTD 298

Query: 77  CLKQIASQADGALATEIGQSGVINSVLRLF-PQSDDSFRTVLVKCLRVFVTFGNENRVIV 135
           CL+ +A   +      I  SG   +++ +    + +       + L+V ++  + N+  +
Sbjct: 299 CLQILAY-GNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKV-LSVCSSNKPAI 356

Query: 136 ARNGGLEIVIDLLNSCNDGTRRYLLEILSALALLREVRRVLICLGGLRYLVEAVSFGSMV 195
              GG++ +   L   +    +  L  L  L+      +     G L  LV+ +    + 
Sbjct: 357 VEAGGMQALGLHLTDPSQRLVQNCLWTLRNLS--DAATKQEGMEGLLGTLVQLLGSDDIN 414

Query: 196 SRERACQAIGLLAVTGRARRLLV-ELGVIPGLVEL--FHIGDWTTKLVAGNTLGVVAAH- 251
               A   +  L       +++V ++G I  LV               A   L  + +  
Sbjct: 415 VVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRH 474

Query: 252 ---VEYITPVAEAGAIPLYAELLQGPDSTGKEISED-VFCILAVSEANANAIAEH----- 302
                    V     +P+  +LL  P       +   +   LA+  AN   + E      
Sbjct: 475 QDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPR 534

Query: 303 LVRILREGDNEAN----------------------AAAADVLWDLAGYKHSVPVIRNSGA 340
           LV++L     +                         A    L  LA   H+  VIR    
Sbjct: 535 LVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARDIHNRIVIRGLNT 594

Query: 341 IPILVNLLRGENDEVREKVSGAIAQLSYNEADRVALADAGAVPIMIELLHDESEELRDNA 400
           IP+ V LL    + ++   +G + +L+ ++    A+   GA   + ELLH  +E +   A
Sbjct: 595 IPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYA 654

Query: 401 AESLINFSEDPLQHERISEAIGI 423
           A  L   SED  Q  +   ++ +
Sbjct: 655 AAVLFRMSEDKPQDYKKRLSVEL 677

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score =  142 bits (359), Expect = 1e-36
 Identities = 73/421 (17%), Positives = 145/421 (34%), Gaps = 29/421 (6%)

Query: 21  SGSEALQVKALTKLARVSKFAPQDIL----AATIPILARLLGENNFSGNLTRSIQQAAAY 76
              + +  KA   + ++SK              +  + R +   N          +  + 
Sbjct: 161 DEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDV-----ETARCTSG 215

Query: 77  CLKQIASQADGALATEIGQSGVINSVLRLFPQSDDSFRTVLVKCLRVFVTFGNENRVIVA 136
            L  ++   +G LA  I +SG I +++ +     DS     +  L   +      ++ V 
Sbjct: 216 TLHNLSHHREGLLA--IFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVR 273

Query: 137 RNGGLEIVIDLLNSCNDGTRRYLLEILSALALLREVRRVLI-CLGGLRYLVEAVSFGSMV 195
             GGL+ ++ LLN  N        + L  LA   +  +++I   GG + LV  +   +  
Sbjct: 274 LAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYE 333

Query: 196 S-RERACQAIGLLAVTGRARRLLVELGVIPGLVELFHIGDWTTKLVAGNTLGVVAAHVEY 254
                  + + +L+V    +  +VE G +  L                 TL  ++     
Sbjct: 334 KLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATK 393

Query: 255 ITPVAEAGAIPLYAELLQGPDSTGKEISEDVFCILAV-SEANANAIAEH-----LVRILR 308
                  G +    +LL   D      +  +   L   +  N   + +      LVR + 
Sbjct: 394 Q--EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVL 451

Query: 309 EGDNEAN--AAAADVLWDLAGYKHSVPV----IRNSGAIPILVNLLRGENDEVREK-VSG 361
              +  +    A   L  L        +    +R    +P++V LL   +     K   G
Sbjct: 452 RAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVG 511

Query: 362 AIAQLSYNEADRVALADAGAVPIMIELLHDESEELRDNAAESLINFSE-DPLQHERISEA 420
            I  L+   A+   L + GA+P +++LL    ++ +   +         + ++ E I EA
Sbjct: 512 LIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEA 571

Query: 421 I 421
            
Sbjct: 572 C 572

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score =  136 bits (344), Expect = 1e-34
 Identities = 53/308 (17%), Positives = 103/308 (33%), Gaps = 13/308 (4%)

Query: 129 NENRVIVARNGGLEIVIDLLNSCNDGTRRYLLEILSALALLREVRRVLI-CLGGLRYLVE 187
           N           +  +  LLN  +         ++  L+     R  ++     +  +V 
Sbjct: 140 NYQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVR 199

Query: 188 AVSFGS-MVSRERACQAIGLLAVTGRARRLLVELGVIPGLVELFHIGDWTTKLVAGNTLG 246
            +   + + +       +  L+        + + G IP LV +      +    A  TL 
Sbjct: 200 TMQNTNDVETARCTSGTLHNLSHHREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLH 259

Query: 247 VVAAHVEYITP-VAEAGAIPLYAELLQGPDSTGKEISEDVFCILAV-SEANANAIAEH-- 302
            +  H E     V  AG +     LL   +     I+ D   ILA  ++ +   I     
Sbjct: 260 NLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGG 319

Query: 303 ---LVRILREGDNEA-NAAAADVLWDLAGYKHSVPVIRNSGAIPILVNLLRGENDEVREK 358
              LV I+R    E      + VL  L+    + P I  +G +  L   L   +  + + 
Sbjct: 320 PQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQN 379

Query: 359 VSGAIAQLSYNEADRVALADAGAVPIMIELLHDESEELRDNAAESLINFS-EDPLQHERI 417
               +  LS     +  +   G +  +++LL  +   +   AA  L N +  +      +
Sbjct: 380 CLWTLRNLSDAATKQEGM--EGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMV 437

Query: 418 SEAIGIPS 425
            +  GI +
Sbjct: 438 CQVGGIEA 445

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score =  125 bits (315), Expect = 6e-31
 Identities = 52/267 (19%), Positives = 107/267 (40%), Gaps = 10/267 (3%)

Query: 165 ALALLREVRRVLICLGGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRARRLLV-ELGVI 223
            + L+       +    +  L + ++    V   +A   +  L+    +R  ++    ++
Sbjct: 135 VVNLINYQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMV 194

Query: 224 PGLVE-LFHIGDWTTKLVAGNTLGVVAAHVEYITPVAEAGAIPLYAELLQGPDSTGKEIS 282
             +V  + +  D  T      TL  ++ H E +  + ++G IP    +L  P  +    +
Sbjct: 195 SAIVRTMQNTNDVETARCTSGTLHNLSHHREGLLAIFKSGGIPALVNMLGSPVDSVLFHA 254

Query: 283 EDVFCILAV-SEANANAIAEH-----LVRILREGDNEANAAAADVLWDLA-GYKHSVPVI 335
                 L +  E    A+        +V +L + + +  A   D L  LA G + S  +I
Sbjct: 255 ITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLII 314

Query: 336 RNSGAIPILVNLLR-GENDEVREKVSGAIAQLSYNEADRVALADAGAVPIMIELLHDESE 394
             SG    LVN++R    +++    S  +  LS   +++ A+ +AG +  +   L D S+
Sbjct: 315 LASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQ 374

Query: 395 ELRDNAAESLINFSEDPLQHERISEAI 421
            L  N   +L N S+   + E +   +
Sbjct: 375 RLVQNCLWTLRNLSDAATKQEGMEGLL 401

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score = 82.8 bits (204), Expect = 5e-17
 Identities = 34/175 (19%), Positives = 69/175 (39%), Gaps = 4/175 (2%)

Query: 255 ITPVAEAGAIPLYAELLQGPDSTGKEISEDVFCILAVSEANANAIAEHLVRILREGDNEA 314
           I       A P   + L  P    K    ++      +E    AI   L ++L + D   
Sbjct: 108 IPSTQFDSAHPTNVQRLAEPSQMLKHAVVNLINYQDDAELATRAI-PELTKLLNDEDQVV 166

Query: 315 NAAAADVLWDLAGYKHS-VPVIRNSGAIPILVNLLRGEND-EVREKVSGAIAQLSYNEAD 372
              AA ++  L+  + S   ++R+   +  +V  ++  ND E     SG +  LS++   
Sbjct: 167 VNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHREG 226

Query: 373 RVALADAGAVPIMIELLHDESEELRDNAAESLINFSEDPLQHER-ISEAIGIPSF 426
            +A+  +G +P ++ +L    + +  +A  +L N        +  +  A G+   
Sbjct: 227 LLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKM 281

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  159 bits (403), Expect = 9e-43
 Identities = 76/441 (17%), Positives = 162/441 (36%), Gaps = 47/441 (10%)

Query: 28  VKALTKLARVSKFAPQDILAATIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQADG 87
              L  L+   +       +  IP L ++LG          S+   A   L  +    +G
Sbjct: 78  AGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPV------DSVLFYAITTLHNLLLHQEG 131

Query: 88  ALATEIGQSGVINSVLRLFPQSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDL 147
           A    +  +G +  ++ L  +++  F  +   CL++      E+++I+  +GG + ++++
Sbjct: 132 A-KMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNI 190

Query: 148 LNSCND-GTRRYLLEILSALALLREVRRVLICLGGLRYLVEAVSFGSMVSRERACQAIGL 206
           + +            +L  L++    +  ++  GG++ L   ++  S    +     +  
Sbjct: 191 MRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRN 250

Query: 207 LAVTGRARRLLVELGVIPGLVELFHIGDWTTKLVAGNTLGVVAAH-VEYITPVAEAGAIP 265
           L+     +      G++  LV+L    D      A   L  +  +  +    V + G I 
Sbjct: 251 LSDAATKQ--EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIE 308

Query: 266 LYAELLQGPDSTGKEISEDVFCILA-------VSEANANAIAEH-----LVRILREGDNE 313
                +       ++I+E   C L         +E   NA+  H     +V++L    + 
Sbjct: 309 ALVRTVL-RAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHW 367

Query: 314 A-NAAAADVLWDLAGYKHSVPVIRNSGAIPILVNLLR----------------------G 350
               A   ++ +LA    +   +R  GAIP LV LL                        
Sbjct: 368 PLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGV 427

Query: 351 ENDEVREKVSGAIAQLSYNEADRVALADAGAVPIMIELLHDESEELRDNAAESLINFSED 410
             +E+ E  +GA+  L+ +  +R+ +     +P+ ++LL+   E ++  AA  L   ++D
Sbjct: 428 RMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 487

Query: 411 PLQHERISEAIGIPSFQSMQS 431
               E I           +  
Sbjct: 488 KEAAEAIEAEGATAPLTELLH 508

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  153 bits (389), Expect = 7e-41
 Identities = 78/415 (18%), Positives = 138/415 (33%), Gaps = 36/415 (8%)

Query: 21  SGSEALQ---VKALTKLARVSKFAPQDILAA-TIPILARLLGENNFSGNLTRSIQQAAAY 76
             +          L  LA  ++ +   ILA+     L  ++            +    + 
Sbjct: 151 KTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYT-----YEKLLWTTSR 205

Query: 77  CLKQIASQADGALATEIGQSGVINSVLRLFPQSDDSFRTVLVKCLRVFVTFGNENRVIVA 136
            LK ++  +       I ++G + ++             ++  CL       +       
Sbjct: 206 VLKVLSVCSS--NKPAIVEAGGMQALGLHLTDPSQR---LVQNCLWTLRNLSDAATKQEG 260

Query: 137 RNGGLEIVIDLLNSCNDGTRRYLLEILSALALLREVRRVLIC-LGGLRYLVEAVSFGSMV 195
             G L  ++ LL S +         ILS L       ++++C +GG+  LV  V      
Sbjct: 261 MEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDR 320

Query: 196 S--RERACQAIGLLAV----TGRARRLLVELGVIPGLVELFHIGD-WTTKLVAGNTLGVV 248
               E A  A+  L         A+  +     +P +V+L H    W         +  +
Sbjct: 321 EDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNL 380

Query: 249 AAHVEYITPVAEAGAIPLYAELLQGPDSTGKEISEDVFCILAVSEANANAIAEHLVRILR 308
           A       P+ E GAIP   +LL       +  +          E               
Sbjct: 381 ALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRME---------- 430

Query: 309 EGDNEANAAAADVLWDLAGYKHSVPVIRNSGAIPILVNLLRGENDEVREKVSGAIAQLSY 368
               E        L  LA   H+  VIR    IP+ V LL    + ++   +G + +L+ 
Sbjct: 431 ----EIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQ 486

Query: 369 NEADRVALADAGAVPIMIELLHDESEELRDNAAESLINFSEDPLQHERISEAIGI 423
           ++    A+   GA   + ELLH  +E +   AA  L   SED  Q  +   ++ +
Sbjct: 487 DKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKPQDYKKRLSVEL 541

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  150 bits (381), Expect = 7e-40
 Identities = 74/400 (18%), Positives = 157/400 (39%), Gaps = 26/400 (6%)

Query: 42  PQDILAA-TIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQADGALATEIGQSGVIN 100
               LA   IP L +LL + +      + +   AA  + Q++ + + +    +    +++
Sbjct: 7   DDAELATRAIPELTKLLNDED------QVVVNKAAVMVHQLSKK-EASRHAIMRSPQMVS 59

Query: 101 SVLRLFPQSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLNSCNDGTRRYLL 160
           +++R    ++D             ++   E  + + ++GG+  ++ +L S  D    Y +
Sbjct: 60  AIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAI 119

Query: 161 EILSALALLREVRRVLIC-LGGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRA-RRLLV 218
             L  L L +E  ++ +   GGL+ +V  ++  ++         + +LA   +  + +++
Sbjct: 120 TTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIIL 179

Query: 219 ELGVIPGLVELFHIGDWTTKLV-AGNTLGVVAAHVEYITPVAEAGAIPLYAELLQGPDST 277
             G    LV +     +   L      L V++        + EAG +      L  P   
Sbjct: 180 ASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQR 239

Query: 278 GKEISEDVFCILAVSEANANAIAE-----HLVRILREGDNEANAAAADVLWDLA-GYKHS 331
             +    ++ +  +S+A             LV++L   D      AA +L +L      +
Sbjct: 240 LVQNC--LWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKN 297

Query: 332 VPVIRNSGAIPILVNLLR--GENDEVREKVSGAIAQLSY----NEADRVALADAGAVPIM 385
             ++   G I  LV  +   G+ +++ E    A+  L+      E  + A+     +P++
Sbjct: 298 KMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVV 357

Query: 386 IELLHDESEELRDNAAESLI-NFSEDPLQHERISEAIGIP 424
           ++LLH  S      A   LI N +  P  H  + E   IP
Sbjct: 358 VKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIP 397

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  139 bits (352), Expect = 5e-36
 Identities = 54/308 (17%), Positives = 104/308 (33%), Gaps = 13/308 (4%)

Query: 129 NENRVIVARNGGLEIVIDLLNSCNDGTRRYLLEILSALALLREVRRVLI-CLGGLRYLVE 187
           N           +  +  LLN  +         ++  L+     R  ++     +  +V 
Sbjct: 4   NYQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVR 63

Query: 188 AVSFGS-MVSRERACQAIGLLAVTGRARRLLVELGVIPGLVELFHIGDWTTKLVAGNTLG 246
            +   + + +       +  L+        + + G IP LV++      +    A  TL 
Sbjct: 64  TMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLH 123

Query: 247 VVAAHVEYITP-VAEAGAIPLYAELLQGPDSTGKEISEDVFCILAV-SEANANAIAE--- 301
            +  H E     V  AG +     LL   +     I+ D   ILA  ++ +   I     
Sbjct: 124 NLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGG 183

Query: 302 --HLVRILREGDNEAN-AAAADVLWDLAGYKHSVPVIRNSGAIPILVNLLRGENDEVREK 358
              LV I+R    E      + VL  L+    + P I  +G +  L   L   +  + + 
Sbjct: 184 PQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQN 243

Query: 359 VSGAIAQLSYNEADRVALADAGAVPIMIELLHDESEELRDNAAESLINFS-EDPLQHERI 417
               +  LS  +A        G +  +++LL  +   +   AA  L N +  +      +
Sbjct: 244 CLWTLRNLS--DAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMV 301

Query: 418 SEAIGIPS 425
            +  GI +
Sbjct: 302 CQVGGIEA 309

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score = 78.1 bits (192), Expect = 1e-15
 Identities = 27/137 (19%), Positives = 58/137 (42%), Gaps = 4/137 (2%)

Query: 293 EANANAIAEHLVRILREGDNEANAAAADVLWDLAGYKHSV-PVIRNSGAIPILVNLLRGE 351
           E    AI   L ++L + D      AA ++  L+  + S   ++R+   +  +V  ++  
Sbjct: 10  ELATRAI-PELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNT 68

Query: 352 ND-EVREKVSGAIAQLSYNEADRVALADAGAVPIMIELLHDESEELRDNAAESLINFS-E 409
           ND E     +G +  LS++    +A+  +G +P ++++L    + +   A  +L N    
Sbjct: 69  NDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLH 128

Query: 410 DPLQHERISEAIGIPSF 426
                  +  A G+   
Sbjct: 129 QEGAKMAVRLAGGLQKM 145

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  156 bits (397), Expect = 2e-42
 Identities = 76/441 (17%), Positives = 162/441 (36%), Gaps = 47/441 (10%)

Query: 28  VKALTKLARVSKFAPQDILAATIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQADG 87
              L  L+   +       +  IP L ++LG          S+   A   L  +    +G
Sbjct: 81  AGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPV------DSVLFYAITTLHNLLLHQEG 134

Query: 88  ALATEIGQSGVINSVLRLFPQSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDL 147
           A    +  +G +  ++ L  +++  F  +   CL++      E+++I+  +GG + ++++
Sbjct: 135 A-KMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNI 193

Query: 148 LNSCND-GTRRYLLEILSALALLREVRRVLICLGGLRYLVEAVSFGSMVSRERACQAIGL 206
           + +            +L  L++    +  ++  GG++ L   ++  S    +     +  
Sbjct: 194 MRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRN 253

Query: 207 LAVTGRARRLLVELGVIPGLVELFHIGDWTTKLVAGNTLGVVAAH-VEYITPVAEAGAIP 265
           L+     +      G++  LV+L    D      A   L  +  +  +    V + G I 
Sbjct: 254 LSDAATKQ--EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIE 311

Query: 266 LYAELLQGPDSTGKEISEDVFCILA-------VSEANANAIAEH-----LVRILREGDNE 313
                +       ++I+E   C L         +E   NA+  H     +V++L    + 
Sbjct: 312 ALVRTVL-RAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHW 370

Query: 314 A-NAAAADVLWDLAGYKHSVPVIRNSGAIPILVNLLR----------------------G 350
               A   ++ +LA    +   +R  GAIP LV LL                        
Sbjct: 371 PLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGV 430

Query: 351 ENDEVREKVSGAIAQLSYNEADRVALADAGAVPIMIELLHDESEELRDNAAESLINFSED 410
             +E+ E  +GA+  L+ +  +R+ +     +P+ ++LL+   E ++  AA  L   ++D
Sbjct: 431 RMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 490

Query: 411 PLQHERISEAIGIPSFQSMQS 431
               E I           +  
Sbjct: 491 KEAAEAIEAEGATAPLTELLH 511

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  148 bits (376), Expect = 1e-39
 Identities = 76/428 (17%), Positives = 146/428 (34%), Gaps = 50/428 (11%)

Query: 21  SGSEALQVKALTKLARVSKFAPQD----ILAATIPILARLLGENNFSGNLTRSIQQAAAY 76
           S  +++   A+T L  +            LA  +  +  LL + N               
Sbjct: 112 SPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTN------VKFLAITTD 165

Query: 77  CLKQIASQADGALATEIGQSGVINSVLRLF-PQSDDSFRTVLVKCLRVFVTFGNENRVIV 135
           CL+ +A   +      I  SG   +++ +    + +       + L+V  +  + N+  +
Sbjct: 166 CLQILAY-GNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVL-SVCSSNKPAI 223

Query: 136 ARNGGLEIVIDLLNSCNDGTRRYLLEILSALALLREVRRVLICLGGLRYLVEAVSFGSMV 195
              GG++ +   L   +    +  L  L  L+      +     G L  LV+ +    + 
Sbjct: 224 VEAGGMQALGLHLTDPSQRLVQNCLWTLRNLS--DAATKQEGMEGLLGTLVQLLGSDDIN 281

Query: 196 SRERACQAIGLLAVTGRARRLLV-ELGVIPGLVELFHIGDWTTKLV--AGNTLGVVAAHV 252
               A   +  L       +++V ++G I  LV           +   A   L  + +  
Sbjct: 282 VVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRH 341

Query: 253 E----YITPVAEAGAIPLYAELLQGPDSTGK-EISEDVFCILAVSEANANAIAEH----- 302
           +        V     +P+  +LL  P      + +  +   LA+  AN   + E      
Sbjct: 342 QEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPR 401

Query: 303 LVRILREGDNEANAAAAD----------------------VLWDLAGYKHSVPVIRNSGA 340
           LV++L     +     +                        L  LA   H+  VIR    
Sbjct: 402 LVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNT 461

Query: 341 IPILVNLLRGENDEVREKVSGAIAQLSYNEADRVALADAGAVPIMIELLHDESEELRDNA 400
           IP+ V LL    + ++   +G + +L+ ++    A+   GA   + ELLH  +E +   A
Sbjct: 462 IPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYA 521

Query: 401 AESLINFS 408
           A  L   S
Sbjct: 522 AAVLFRMS 529

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  139 bits (352), Expect = 2e-36
 Identities = 74/424 (17%), Positives = 144/424 (33%), Gaps = 30/424 (7%)

Query: 21  SGSEALQVKALTKLARVSKFAPQDILAAT----IPILARLLGENNFSGNLTRSIQQAAAY 76
              + +  KA   + ++SK              +  + R +   N          +  A 
Sbjct: 28  DEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDV-----ETARCTAG 82

Query: 77  CLKQIASQADGALATEIGQSGVINSVLRLFPQSDDSFRTVLVKCLRVFVTFGNENRVIVA 136
            L  ++   +G LA  I +SG I +++++     DS     +  L   +      ++ V 
Sbjct: 83  TLHNLSHHREGLLA--IFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVR 140

Query: 137 RNGGLEIVIDLLNSCNDGTRRYLLEILSALALLREVRRVLIC-LGGLRYLVEAVSFGSMV 195
             GGL+ ++ LLN  N        + L  LA   +  +++I   GG + LV  +   +  
Sbjct: 141 LAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYE 200

Query: 196 S-RERACQAIGLLAVTGRARRLLVELGVIPGLVELFHIGDWTTKLVAGNTLGVVAAHVEY 254
                  + + +L+V    +  +VE G +  L                 TL  ++     
Sbjct: 201 KLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATK 260

Query: 255 ITPVAEAGAIPLYAELLQGPDSTGKEISEDVFCILAV-SEANANAIAEH-----LVRILR 308
                  G +    +LL   D      +  +   L   +  N   + +      LVR + 
Sbjct: 261 Q--EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVL 318

Query: 309 EGDNEAN--AAAADVLWDLAGYKHSVPVIRN----SGAIPILVNLLRGENDEVREK-VSG 361
              +  +    A   L  L        + +N       +P++V LL   +     K   G
Sbjct: 319 RAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVG 378

Query: 362 AIAQLSYNEADRVALADAGAVPIMIELLHDESEELRDNAAESLIN--FSEDPLQHERISE 419
            I  L+   A+   L + GA+P +++LL    ++ +   +       F E     E +  
Sbjct: 379 LIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEG 438

Query: 420 AIGI 423
             G 
Sbjct: 439 CTGA 442

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  137 bits (347), Expect = 1e-35
 Identities = 54/309 (17%), Positives = 103/309 (33%), Gaps = 13/309 (4%)

Query: 129 NENRVIVARNGGLEIVIDLLNSCNDGTRRYLLEILSALALLREVRRVLI-CLGGLRYLVE 187
           N           +  +  LLN  +         ++  L+     R  ++     +  +V 
Sbjct: 7   NYQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVR 66

Query: 188 AVSFGSMVS-RERACQAIGLLAVTGRARRLLVELGVIPGLVELFHIGDWTTKLVAGNTLG 246
            +   + V         +  L+        + + G IP LV++      +    A  TL 
Sbjct: 67  TMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLH 126

Query: 247 VVAAHVEYITP-VAEAGAIPLYAELLQGPDSTGKEISEDVFCILAV-SEANANAIAEH-- 302
            +  H E     V  AG +     LL   +     I+ D   ILA  ++ +   I     
Sbjct: 127 NLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGG 186

Query: 303 ---LVRILREGDNEAN-AAAADVLWDLAGYKHSVPVIRNSGAIPILVNLLRGENDEVREK 358
              LV I+R    E      + VL  L+    + P I  +G +  L   L   +  + + 
Sbjct: 187 PQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQN 246

Query: 359 VSGAIAQLSYNEADRVALADAGAVPIMIELLHDESEELRDNAAESLINFS-EDPLQHERI 417
               +  LS     +  +   G +  +++LL  +   +   AA  L N +  +      +
Sbjct: 247 CLWTLRNLSDAATKQEGM--EGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMV 304

Query: 418 SEAIGIPSF 426
            +  GI + 
Sbjct: 305 CQVGGIEAL 313

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  128 bits (324), Expect = 2e-32
 Identities = 52/341 (15%), Positives = 116/341 (34%), Gaps = 14/341 (4%)

Query: 93  IGQSGVINSVLRLFPQSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLNSCN 152
              +  I  + +L    D          +            I+     +  ++  + + N
Sbjct: 13  ELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTN 72

Query: 153 D-GTRRYLLEILSALALLREVRRVLICLGGLRYLVEAVSFGSMVSRERACQAIGLLAVTG 211
           D  T R     L  L+  RE    +   GG+  LV+ +          A   +  L +  
Sbjct: 73  DVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQ 132

Query: 212 RARRLLV-ELGVIPGLVELFHIGDWTTKLVAGNTLGVVAA-HVEYITPVAEAGAIPLYAE 269
              ++ V   G +  +V L +  +     +  + L ++A  + E    +  +G       
Sbjct: 133 EGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVN 192

Query: 270 LLQGPDSTG-KEISEDVFCILAVSEANANAIAEH-----LVRILREGDNEANAAAADVLW 323
           +++          +  V  +L+V  +N  AI E      L   L +            L 
Sbjct: 193 IMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLR 252

Query: 324 DLAGYKHSVPVIRNSGAIPILVNLLRGENDEVREKVSGAIAQLSYNEAD-RVALADAGAV 382
           +L+    +       G +  LV LL  ++  V    +G ++ L+ N    ++ +   G +
Sbjct: 253 NLS--DAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGI 310

Query: 383 PIMIELL--HDESEELRDNAAESLINFSEDPLQHERISEAI 421
             ++  +    + E++ + A  +L + +    + E    A+
Sbjct: 311 EALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAV 351

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  118 bits (298), Expect = 4e-29
 Identities = 50/267 (18%), Positives = 105/267 (39%), Gaps = 12/267 (4%)

Query: 166 LALLREVRRVLICLGGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRARRLLV-ELGVIP 224
           + L+       +    +  L + ++    V   +A   +  L+    +R  ++    ++ 
Sbjct: 3   VNLINYQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVS 62

Query: 225 GLVE-LFHIGDWTTKLVAGNTLGVVAAHVEYITPVAEAGAIPLYAELLQGPDSTGKEISE 283
            +V  + +  D  T      TL  ++ H E +  + ++G IP   ++L  P  +    + 
Sbjct: 63  AIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAI 122

Query: 284 DVFCILAVSEAN-------ANAIAEHLVRILREGDNEANAAAADVLWDLAGYKHSVPV-I 335
                L + +         A  + + +V +L + + +  A   D L  LA       + I
Sbjct: 123 TTLHNLLLHQEGAKMAVRLAGGL-QKMVALLNKTNVKFLAITTDCLQILAYGNQESKLII 181

Query: 336 RNSGAIPILVNLLRGENDE-VREKVSGAIAQLSYNEADRVALADAGAVPIMIELLHDESE 394
             SG    LVN++R    E +    S  +  LS   +++ A+ +AG +  +   L D S+
Sbjct: 182 LASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQ 241

Query: 395 ELRDNAAESLINFSEDPLQHERISEAI 421
            L  N   +L N S+   + E +   +
Sbjct: 242 RLVQNCLWTLRNLSDAATKQEGMEGLL 268

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354

 Score =  124 bits (314), Expect = 3e-32
 Identities = 70/372 (18%), Positives = 131/372 (35%), Gaps = 52/372 (13%)

Query: 77  CLKQIASQADGALATEIGQSGVINSVLRLFPQSDDSFRTVLVKCLRVFVTFGNENRVIVA 136
            L+QI +  +     +      ++      P   +      V  L   ++F  E+R  + 
Sbjct: 12  LLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMK-LSFDEEHRHAMN 70

Query: 137 RNGGLEIVIDLLNS-----------CNDGTRRYLLEILSALALLREVRRVLICL--GGLR 183
             GGL+ + +LL              +   RRY    L+ L       +  +C   G +R
Sbjct: 71  ELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMR 130

Query: 184 YLVEAVSFGSMVSRERACQAIGLLAVTG--RARRLLVELGVIPGLVELF-HIGDWTTKLV 240
            LV  +   S   ++     +  L+      +++ L E+G +  L+E    +   +T   
Sbjct: 131 ALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKS 190

Query: 241 AGNTLGVVAAHV-EYITP-VAEAGAIPLYAELLQGPDSTGKEISEDVFCILAVSEANANA 298
             + L  ++AH  E      A  GA+      L     T                    A
Sbjct: 191 VLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTL-----------------A 233

Query: 299 IAEHLVRILREGDNEANAAAADVLWDLAGYKHSVPVIRNSGAIPILVNLLRGENDEVREK 358
           I E    ILR            V   +A  +    ++R +  +  L+  L+  +  +   
Sbjct: 234 IIESGGGILRN-----------VSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSN 282

Query: 359 VSGAIAQLSY-NEADRVALADAGAVPIMIELLHDESEELRDNAAESLINFSEDPLQHERI 417
             G +  LS  N  D+ AL D GAV ++  L+H + + +   +A +L N   +     + 
Sbjct: 283 ACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPAKYKD 342

Query: 418 SEAI----GIPS 425
           +  +     +PS
Sbjct: 343 ANIMSPGSSLPS 354

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354

 Score = 76.8 bits (189), Expect = 2e-15
 Identities = 44/292 (15%), Positives = 98/292 (33%), Gaps = 18/292 (6%)

Query: 28  VKALTKLARVSKFAPQDILAATIPILARLL-----GENNFSGNLTRSIQQAAAYCLKQIA 82
           V  L KL+   +          +  +A LL          + + + ++++ A   L  + 
Sbjct: 53  VCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLT 112

Query: 83  SQADGALATEIGQSGVINSVLRLFPQSDDSFRTVLVKCLRVFVTFGN-ENRVIVARNGGL 141
                  AT     G + +++       +  + V+   LR      +  ++  +   G +
Sbjct: 113 FGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSV 172

Query: 142 EIVIDLLNSCND-GTRRYLLEILSALALLREVRRVLICL--GGLRYLVEAVSF----GSM 194
           + +++         T + +L  L  L+      +  IC   G L +LV  +++     ++
Sbjct: 173 KALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTL 232

Query: 195 VSRERACQAI----GLLAVTGRARRLLVELGVIPGLVELFHIGDWTTKLVAGNTLG-VVA 249
              E     +     L+A     R++L E   +  L++       T    A  TL  + A
Sbjct: 233 AIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSA 292

Query: 250 AHVEYITPVAEAGAIPLYAELLQGPDSTGKEISEDVFCILAVSEANANAIAE 301
            + +    + + GA+ +   L+          S      L  +       A 
Sbjct: 293 RNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPAKYKDAN 344

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354

 Score = 56.8 bits (137), Expect = 5e-09
 Identities = 18/106 (16%), Positives = 35/106 (33%), Gaps = 13/106 (12%)

Query: 334 VIRNSGAIPILVNLLRGENDEVREKVSGAIAQLSYNEADRVALADAGAVPIMIELL---- 389
              +   +    N +    +         + +LS++E  R A+ + G +  + ELL    
Sbjct: 27  QEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDC 86

Query: 390 -------HDESEELRDNAAESLIN--FSEDPLQHERISEAIGIPSF 426
                     S  LR  A  +L N  F +   +    S    + + 
Sbjct: 87  EMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRAL 132

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score =  122 bits (307), Expect = 1e-30
 Identities = 72/404 (17%), Positives = 135/404 (33%), Gaps = 50/404 (12%)

Query: 26  LQVKALTKLARVSKFAPQDILAATIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQA 85
           L       +   +    ++  A     L  ++          R I+      L+QI +  
Sbjct: 79  LHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQPDDKRGRREIRVLH--LLEQIRAYC 136

Query: 86  DGALATEIGQSGVINSVLRLFPQSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVI 145
           +     +      ++      P   +      V  L    +F  E+R  +   GGL+ + 
Sbjct: 137 ETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKL-SFDEEHRHAMNELGGLQAIA 195

Query: 146 DLLNSC-----------NDGTRRYLLEILSALALLREVRRVLICL--GGLRYLVEAVSFG 192
           +LL              +   RRY    L+ L       +  +C   G +R LV  +   
Sbjct: 196 ELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSE 255

Query: 193 SMVSRERACQAIGLLAVTG--RARRLLVELGVIPGLVELF-HIGDWTTKLVAGNTLGVVA 249
           S   ++     +  L+      +++ L E+G +  L+E    +   +T     + L  ++
Sbjct: 256 SEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLS 315

Query: 250 AHVE--YITPVAEAGAIPLYAELLQGPDSTGKEISEDVFCILAVSEANANAIAEHLVRIL 307
           AH         A  GA+      L     T                    AI E    IL
Sbjct: 316 AHCTENKADICAVDGALAFLVGTLTYRSQTNTL-----------------AIIESGGGIL 358

Query: 308 REGDNEANAAAADVLWDLAGYKHSVPVIRNSGAIPILVNLLRGENDEVREKVSGAIAQLS 367
           R            V   +A  +    ++R +  +  L+  L+  +  +     G +  LS
Sbjct: 359 RN-----------VSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLS 407

Query: 368 Y-NEADRVALADAGAVPIMIELLHDESEELRDNAAESLINFSED 410
             N  D+ AL D GAV ++  L+H + + +   +A +L N   +
Sbjct: 408 ARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMAN 451

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score = 78.8 bits (194), Expect = 6e-16
 Identities = 38/292 (13%), Positives = 95/292 (32%), Gaps = 35/292 (11%)

Query: 70  IQQAAAYCLKQIASQADGALATEIGQSGVINSVLRL-----------FPQSDDSFRTVLV 118
               A   L +++   +   A  + + G + ++  L                 + R    
Sbjct: 164 QICPAVCVLMKLSFDEEHRHA--MNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAG 221

Query: 119 KCLRVFVTFGNEN--RVIVARNGGLEIVIDLLNSCNDGTRRYLLEILSALALLR--EVRR 174
             L   +TFG+      + +  G +  ++  L S ++  ++ +  +L  L+       ++
Sbjct: 222 MALTN-LTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKK 280

Query: 175 VLICLGGLRYLVEAVSFGSMVS-RERACQAIGLLAVTGRA--RRLLVELGVIPGLVELFH 231
            L  +G ++ L+E        S  +    A+  L+         +    G +  LV    
Sbjct: 281 TLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLT 340

Query: 232 IGDWTTKL-VAGNTLGV-------VAAHVEYITPVAEAGAIPLYAELLQGPDSTGKEISE 283
               T  L +  +  G+       +A + ++   + E   +    + L+    T    + 
Sbjct: 341 YRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNAC 400

Query: 284 DVFCILAV-SEANANAIAEH-----LVRILREGDNEANAAAADVLWDLAGYK 329
                L+  +  +  A+ +      L  ++          +A  L +L   +
Sbjct: 401 GTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANR 452

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score = 75.8 bits (186), Expect = 6e-15
 Identities = 51/335 (15%), Positives = 109/335 (32%), Gaps = 52/335 (15%)

Query: 124 FVTFGNENRVIVARNGGLEIVIDLLNSCNDGTRRYLLEILSALALLREVRRVLICLGGLR 183
            V  G+  R+       +E+V  LL+      +  +   L A++  ++    +   G L 
Sbjct: 14  LVPRGSHMRLTSHLGTKVEMVYSLLSMLGTHDKDDMSRTLLAMSSSQDSCISMRQSGCLP 73

Query: 184 YLVE------------AVSFGSMVSRERACQAIG-LLAVTGRARRLLVELGVIPGLVELF 230
            L++              S GS  +R RA  A+  ++      +R   E+ V+  L ++ 
Sbjct: 74  LLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQPDDKRGRREIRVLHLLEQIR 133

Query: 231 HIGDWTTKLVAGNTLGVVAAHVEYITPVAEAGAIPLYAELLQGPDSTGKEISEDVFCILA 290
              +   +                    A    +      +  P       +  V   L+
Sbjct: 134 AYCETCWEWQ-----------------EAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLS 176

Query: 291 VSEANANAIAEH-----LVRILREGDNEANAA-----------AADVLWDLAGYKHS--V 332
             E + +A+ E      +  +L+                    A   L +L     +   
Sbjct: 177 FDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKA 236

Query: 333 PVIRNSGAIPILVNLLRGENDEVREKVSGAIAQLSYNEAD--RVALADAGAVPIMIELL- 389
            +    G +  LV  L+ E++++++ ++  +  LS+      +  L + G+V  ++E   
Sbjct: 237 TLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECAL 296

Query: 390 HDESEELRDNAAESLINFS-EDPLQHERISEAIGI 423
             + E    +   +L N S         I    G 
Sbjct: 297 EVKKESTLKSVLSALWNLSAHCTENKADICAVDGA 331

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score = 75.0 bits (184), Expect = 9e-15
 Identities = 35/253 (13%), Positives = 82/253 (32%), Gaps = 18/253 (7%)

Query: 189 VSFGSMVSRERACQAIGLLAVTGRARRLLVELGVIPGLVELFHIGDWTTKLVAGNTLGVV 248
           +S      ++   + +  ++ +  +   + + G +P L++L H  D  + L+  +     
Sbjct: 38  LSMLGTHDKDDMSRTLLAMSSSQDSCISMRQSGCLPLLIQLLHGNDKDSVLLGNSRGSKE 97

Query: 249 AAH--VEYITPVAEAGAIPLYAELLQGPDSTGKEISEDVFCILAVSEANANAIAEHLVRI 306
           A       +  +  +                 ++I           EA+   + +     
Sbjct: 98  ARARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGM-DQDKNP 156

Query: 307 LREGDNEANAAAADVLWDLAGYKHSVPVIRNSGAIPILVNLLR-----------GENDEV 355
           +          A  VL  L+  +     +   G +  +  LL+             +  +
Sbjct: 157 MPAPVEHQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITL 216

Query: 356 REKVSGAIAQLSYNEADRVAL--ADAGAVPIMIELLHDESEELRDNAAESLINFS--EDP 411
           R     A+  L++ +    A   +  G +  ++  L  ESE+L+   A  L N S   D 
Sbjct: 217 RRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADV 276

Query: 412 LQHERISEAIGIP 424
              + + E   + 
Sbjct: 277 NSKKTLREVGSVK 289

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score = 48.4 bits (115), Expect = 3e-06
 Identities = 25/164 (15%), Positives = 48/164 (29%), Gaps = 37/164 (22%)

Query: 298 AIAEHLVRILREGDNEANAAAADVLWDLAGYKHSVPVIRNSGAIPILVNLLRGE------ 351
              E +  +L           +  L  ++  + S   +R SG +P+L+ LL G       
Sbjct: 29  TKVEMVYSLLSMLGTHDKDDMSRTLLAMSSSQDSCISMRQSGCLPLLIQLLHGNDKDSVL 88

Query: 352 ------NDEVREKVSGAIAQLSYNEAD-------------------------RVALADAG 380
                 + E R + S A+  + +++ D                             A   
Sbjct: 89  LGNSRGSKEARARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEP 148

Query: 381 AVPIMIELLHDESEELRDNAAESLINFSEDPLQHERISEAIGIP 424
            +      +    E     A   L+  S D      ++E  G+ 
Sbjct: 149 GMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHRHAMNELGGLQ 192

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score = 45.3 bits (107), Expect = 3e-05
 Identities = 20/149 (13%), Positives = 51/149 (34%), Gaps = 6/149 (4%)

Query: 30  ALTKLARVSKFAPQDILAAT--IPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQADG 87
           AL  L+        DI A    +  L   L   + +   T +I ++    L+ ++S    
Sbjct: 310 ALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTN--TLAIIESGGGILRNVSSLIAT 367

Query: 88  ALA--TEIGQSGVINSVLRLFPQSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVI 145
                  + ++  + ++L+       +  +     L        +++  +   G + ++ 
Sbjct: 368 NEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLK 427

Query: 146 DLLNSCNDGTRRYLLEILSALALLREVRR 174
           +L++S +          L  L   R  + 
Sbjct: 428 NLIHSKHKMIAMGSAAALRNLMANRPAKY 456

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score = 45.3 bits (107), Expect = 3e-05
 Identities = 21/135 (15%), Positives = 47/135 (34%), Gaps = 20/135 (14%)

Query: 343 ILVNLLRGENDEVREKVSGAIAQLSYNEADRVALADAGAVPIMIELLHDE---------- 392
           ++ +LL       ++ +S  +  +S ++   +++  +G +P++I+LLH            
Sbjct: 33  MVYSLLSMLGTHDKDDMSRTLLAMSSSQDSCISMRQSGCLPLLIQLLHGNDKDSVLLGNS 92

Query: 393 --SEELRDNAAESLINFSEDPLQHERISEAIGIPSF--------QSMQSRLTRIRASDDL 442
             S+E R  A+ +L N        +R    I +           ++            D 
Sbjct: 93  RGSKEARARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQ 152

Query: 443 MARSMRRMSIEQLTW 457
               M      Q+  
Sbjct: 153 DKNPMPAPVEHQICP 167

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score =  117 bits (294), Expect = 3e-30
 Identities = 48/239 (20%), Positives = 104/239 (43%), Gaps = 10/239 (4%)

Query: 180 GGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRARR-LLVELGVIPGLVELFHIGDWTTK 238
             L  + + ++   M  +  A +    +   G  +   +++ G +P LV+L    +    
Sbjct: 12  SELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQIL 71

Query: 239 LVAGNTLGVVAAHVEYITP-VAEAGAIPLYAELLQGPDSTGKEISEDVFCILAV-SEANA 296
             A   L  +A+        V +AGA+P   +LL  P+    + +      +A       
Sbjct: 72  QEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQI 131

Query: 297 NAIAEH-----LVRILREGDNEANAAAADVLWDLA-GYKHSVPVIRNSGAIPILVNLLRG 350
            A+ +      LV++L   + +    A   L ++A G    +  + ++GA+P LV LL  
Sbjct: 132 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSS 191

Query: 351 ENDEVREKVSGAIAQLSY-NEADRVALADAGAVPIMIELLHDESEELRDNAAESLINFS 408
            N+++ ++   A++ ++      + A+ +AGA+  + +L   E+E+++  A E+L    
Sbjct: 192 PNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ 250

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score =  103 bits (258), Expect = 3e-25
 Identities = 47/227 (20%), Positives = 105/227 (46%), Gaps = 14/227 (6%)

Query: 217 LVELGVIPGLVELFHIGDWTTKLVAGNTLGVVAAH-VEYITPVAEAGAIPLYAELLQGPD 275
                 +P + +  +  D   +L A      + +   E I  V +AGA+P   +LL  P+
Sbjct: 8   HHHGSELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPN 67

Query: 276 STGKEISEDVFCILAVS---EANANAIAEH-----LVRILREGDNEANAAAADVLWDLAG 327
               + +  ++ +  ++        A+ +      LV++L   + +    A   L ++A 
Sbjct: 68  EQILQEA--LWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIAS 125

Query: 328 Y-KHSVPVIRNSGAIPILVNLLRGENDEVREKVSGAIAQLSYNEADRV-ALADAGAVPIM 385
                +  + ++GA+P LV LL   N+++ ++   A++ ++    +++ A+ DAGA+P +
Sbjct: 126 GGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPAL 185

Query: 386 IELLHDESEELRDNAAESLINFSE-DPLQHERISEAIGIPSFQSMQS 431
           ++LL   +E++   A  +L N +     Q + + EA  +   + +QS
Sbjct: 186 VQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQS 232

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score = 91.2 bits (227), Expect = 5e-21
 Identities = 56/279 (20%), Positives = 103/279 (36%), Gaps = 40/279 (14%)

Query: 95  QSGVINSVLRLFPQSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLNSCNDG 154
               +  + +     D   +    +     ++ GNE    V   G L  ++ LL+S N+ 
Sbjct: 10  HGSELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQ 69

Query: 155 TRRYLLEILSALALLR-EVRRVLICLGGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRA 213
             +  L  LS +A    E  + +I  G L  LV+ +S  +    + A  A+  +A  G  
Sbjct: 70  ILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE 129

Query: 214 RRLLV-ELGVIPGLVELFHIGDWTTKLVAGNTLGVVAAH-VEYITPVAEAGAIPLYAELL 271
           +   V + G +P LV+L    +      A   L  +A+   E I  V +AGA+P   +LL
Sbjct: 130 QIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLL 189

Query: 272 QGPDSTGKEISEDVFC-ILAVSEANANAIAEHLVRILREGDNEANAAAADVLWDLAGYKH 330
             P+    + +      I +       A+ E                             
Sbjct: 190 SSPNEQILQEALWALSNIASGGNEQKQAVKE----------------------------- 220

Query: 331 SVPVIRNSGAIPILVNLLRGENDEVREKVSGAIAQLSYN 369
                  +GA+  L  L   EN++++++   A+ +L  +
Sbjct: 221 -------AGALEKLEQLQSHENEKIQKEAQEALEKLQSH 252

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score = 82.7 bits (205), Expect = 4e-18
 Identities = 48/237 (20%), Positives = 96/237 (40%), Gaps = 10/237 (4%)

Query: 47  AATIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQADGALATEIGQSGVINSVLRLF 106
            + +P + + L  ++         Q +A     QI S  +      +  +G + ++++L 
Sbjct: 11  GSELPQMTQQLNSDD------MQEQLSATRKFSQILSDGN-EQIQAVIDAGALPALVQLL 63

Query: 107 PQSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLNSCNDGTRRYLLEILSAL 166
              ++      +  L    + GNE    V   G L  ++ LL+S N+   +  L  LS +
Sbjct: 64  SSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNI 123

Query: 167 ALLREVRRVLIC-LGGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRAR-RLLVELGVIP 224
           A     +   +   G L  LV+ +S  +    + A  A+  +A  G  + + +++ G +P
Sbjct: 124 ASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALP 183

Query: 225 GLVELFHIGDWTTKLVAGNTLGVVAAH-VEYITPVAEAGAIPLYAELLQGPDSTGKE 280
            LV+L    +      A   L  +A+   E    V EAGA+    +L    +   ++
Sbjct: 184 ALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQK 240

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score = 65.8 bits (161), Expect = 2e-12
 Identities = 43/193 (22%), Positives = 80/193 (41%), Gaps = 12/193 (6%)

Query: 21  SGSEALQVKALTKLARVSKFAPQDILAAT----IPILARLLGENNFSGNLTRSIQQAAAY 76
           S +E +  +AL  L+ ++    + I A      +P L +LL   N        I Q A +
Sbjct: 65  SPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPN------EQILQEALW 118

Query: 77  CLKQIASQADGALATEIGQSGVINSVLRLFPQSDDSFRTVLVKCLRVFVTFGNENRVIVA 136
            L  IAS  +      +  +G + ++++L    ++      +  L    + GNE    V 
Sbjct: 119 ALSNIASGGN-EQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVI 177

Query: 137 RNGGLEIVIDLLNSCNDGTRRYLLEILSALALLREVRRVLIC-LGGLRYLVEAVSFGSMV 195
             G L  ++ LL+S N+   +  L  LS +A     ++  +   G L  L +  S  +  
Sbjct: 178 DAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEK 237

Query: 196 SRERACQAIGLLA 208
            ++ A +A+  L 
Sbjct: 238 IQKEAQEALEKLQ 250

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530

 Score =  121 bits (305), Expect = 5e-30
 Identities = 80/426 (18%), Positives = 151/426 (35%), Gaps = 39/426 (9%)

Query: 17  QAVVSGSEALQVKALTKLARVSKFAPQDILAATI-----PILARLLGENNFSGNLTRSIQ 71
           Q + S     Q+ A  K  ++     +  +   I     P L   + EN         +Q
Sbjct: 94  QQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPE-----MLQ 148

Query: 72  QAAAYCLKQIASQADGALATEIGQSGVINSVLRLFPQSDDSFRTVLVKCLRVFVTFGNEN 131
             AA+ L  IAS    A    +  +  +   ++L        +   +  L        + 
Sbjct: 149 LEAAWALTNIAS-GTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDY 207

Query: 132 RVIVARNGGLEIVIDLLNSCNDGTRRYLLEILSALALLREVRRVLICL-GGLRYLVEAVS 190
           R  V +   +E ++ L NS      R     LS L   ++ +     +   L  L + + 
Sbjct: 208 RDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIY 267

Query: 191 FGSMVSRERACQAIGLLA-VTGRARRLLVELGVIPGLVELFHIGDWTTKLVAGNTLGVVA 249
                +   AC AI  L+     A + ++++ +   LVEL        +  A   +G + 
Sbjct: 268 SMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIV 327

Query: 250 AHVEYIT-PVAEAGAIPLYAELLQGPD-STGKEISEDVFCILAVSEANANAIAEH----- 302
              +  T  V  AG +P    LL  P  +  KE    +  I A +     A+ +      
Sbjct: 328 TGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPP 387

Query: 303 LVRILREGDNEANAAAADVLWDLAGYKHSVP----VIRNSGAIPILVNLLRGENDEVREK 358
           LV++L   + +    A   + + +      P     + + G I  L +LL   ++ + E 
Sbjct: 388 LVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEV 447

Query: 359 VSGAIAQ-LSYNEADR-----------VALADAGAVPIMIELLHDESEELRDNAAESLIN 406
              A+   L   EAD+             +  AG +  +     +E++++ + A   +I 
Sbjct: 448 TLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAY-KIIE 506

Query: 407 --FSED 410
             F E+
Sbjct: 507 TYFGEE 512

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530

 Score =  108 bits (271), Expect = 1e-25
 Identities = 56/347 (16%), Positives = 132/347 (38%), Gaps = 21/347 (6%)

Query: 92  EIGQSGVINSVLRLFPQSDDSFRTVLVKCLRVFVTFGNENRV-IVARNGGLEIVIDLLNS 150
                  +  + +     D   +       R  ++  +   + +V + G +  +++ +  
Sbjct: 82  YSQLQQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRE 141

Query: 151 CNDGTRRYLLEILSALALL----REVRRVLICLGGLRYLVEAVSFGSMVSRERACQAIGL 206
                 +   E   AL  +        +V++    +   ++ +  GS+  +E+A  A+G 
Sbjct: 142 NQPEMLQL--EAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGN 199

Query: 207 LAVTGRA-RRLLVELGVIPGLVELFHIGDWTTKLVAGNTLGVVAAHVEYITP-VAEAGAI 264
           +A      R  +++   +  ++ LF+    +    A  TL  +    +        + A+
Sbjct: 200 VAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQAL 259

Query: 265 PLYAELLQGPDSTGKEISEDVFCILAVSEANANAIA--------EHLVRILREGDNEANA 316
           P  A+L+   D+  + + +  + I  +S+    AI         + LV +L         
Sbjct: 260 PTLAKLIYSMDT--ETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQT 317

Query: 317 AAADVLWDLA-GYKHSVPVIRNSGAIPILVNLLRGENDEVREKVSGAIAQLS-YNEADRV 374
            A   + ++  G      V+ N+G +P L  LL    + ++++    I+ ++  N     
Sbjct: 318 PALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQ 377

Query: 375 ALADAGAVPIMIELLHDESEELRDNAAESLINFSEDPLQHERISEAI 421
           A+ DA  +P +++LL     + +  A  ++ N S   LQ   I   +
Sbjct: 378 AVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYL 424

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530

 Score = 97.0 bits (241), Expect = 8e-22
 Identities = 70/370 (18%), Positives = 130/370 (35%), Gaps = 32/370 (8%)

Query: 28  VKALTKLARVSKFAPQDILAA-TIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQAD 86
             ALT +A  +    + ++ A  +P+  +LL   +        +++ A + L  +A    
Sbjct: 152 AWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGS------VEVKEQAIWALGNVAGD-S 204

Query: 87  GALATEIGQSGVINSVLRLFPQSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVID 146
                 + Q   +  +L LF  +  S        L                +  L  +  
Sbjct: 205 TDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAK 264

Query: 147 LLNSCNDGTRRYLLEILSALALL-REVRRVLICLGGLRYLVEAVSFGSMVSRERACQAIG 205
           L+ S +  T       +S L+   +E  + +I +   + LVE +S  S + +  A +A+G
Sbjct: 265 LIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVG 324

Query: 206 LLAV-TGRARRLLVELGVIPGLVELFHIGDWTTKLVAGNTLGVVAAHV-EYITPVAEAGA 263
            +        ++++  GV+P L  L        K  A  T+  + A   E I  V +A  
Sbjct: 325 NIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANL 384

Query: 264 IPLYAELLQGPDSTGKEISEDVFCILAVSEANANAIAEHLVR---------ILREGDNEA 314
           IP   +LL+  +   K+ +       +        I  +LV          +L   DN  
Sbjct: 385 IPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRI 444

Query: 315 NAAAADVLWDLA------------GYKHSVPVIRNSGAIPILVNLLRGENDEVREKVSGA 362
                D L ++                 +   I  +G +  + N  + END++ EK    
Sbjct: 445 IEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKI 504

Query: 363 IAQLSYNEAD 372
           I      E D
Sbjct: 505 IETYFGEEED 514

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530

 Score = 73.5 bits (180), Expect = 3e-14
 Identities = 32/218 (14%), Positives = 78/218 (35%), Gaps = 11/218 (5%)

Query: 218 VELGVIPGLVELFHIGDWTTKLVAGNTLGVVAAHVEY--ITPVAEAGAIPLYAELLQGPD 275
                +P + +  +  D   +L A      + +      I  V +AG +P   E ++   
Sbjct: 84  QLQQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQ 143

Query: 276 STG--KEISEDVFCILAVSEANANAIAEH-----LVRILREGDNEANAAAADVLWDLAGY 328
                 E +  +  I + + A    + +       +++L  G  E    A   L ++AG 
Sbjct: 144 PEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGD 203

Query: 329 KHSVP-VIRNSGAIPILVNLLRGENDEVREKVSGAIAQLSYNEADRVALA-DAGAVPIMI 386
                  +    A+  ++ L       +    +  ++ L   +  +   +  + A+P + 
Sbjct: 204 STDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLA 263

Query: 387 ELLHDESEELRDNAAESLINFSEDPLQHERISEAIGIP 424
           +L++    E   +A  ++   S+ P +  +    + IP
Sbjct: 264 KLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIP 301

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530

 Score = 67.7 bits (165), Expect = 3e-12
 Identities = 33/186 (17%), Positives = 67/186 (36%), Gaps = 13/186 (6%)

Query: 249 AAHVEYITPVAEAGAIPLYAELLQGPDSTGKEISEDVFCILAVSEANANA-------IAE 301
           +   +          +P   + L   D   +  +   F  +   E            +  
Sbjct: 74  SVSADQQFYSQLQQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVP 133

Query: 302 HLVRILREGDN-EANAAAADVLWDLA-GYKHSVPVIRNSGAIPILVNLLRGENDEVREKV 359
            LV  +RE         AA  L ++A G      V+ ++ A+P+ + LL   + EV+E+ 
Sbjct: 134 RLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQA 193

Query: 360 SGAIAQLSYNEAD-RVALADAGAVPIMIELLHDESEELRDNAAESLINF---SEDPLQHE 415
             A+  ++ +  D R  +    A+  ++ L +     L   A  +L N     +      
Sbjct: 194 IWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWS 253

Query: 416 RISEAI 421
            +S+A+
Sbjct: 254 VVSQAL 259

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score =  119 bits (299), Expect = 2e-29
 Identities = 88/440 (20%), Positives = 163/440 (37%), Gaps = 35/440 (7%)

Query: 17  QAVVSGSEALQVKALTKLARVSKFAPQD-----ILAATIPILARLLGENNFSGNLTRSIQ 71
           + + S +   Q++A     ++     Q      I A  IP     LG+ +        IQ
Sbjct: 64  KGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTD-----CSPIQ 118

Query: 72  QAAAYCLKQIASQADGALATEIGQSGVINSVLRLFPQSDDSFRTVLVKCLRVFVTFGNEN 131
             +A+ L  IAS         +   G I + + L            V  L      G+  
Sbjct: 119 FESAWALTNIASGTS-EQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF 177

Query: 132 RVIVARNGGLEIVIDLLNSCNDGT-----RRYLLEILSALALLREVRRVLICL-GGLRYL 185
           R +V ++G ++ ++ LL   +  T      R L   LS L   +     L  +   L  L
Sbjct: 178 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTL 237

Query: 186 VEAVSFGSMVSRERACQAIGLLA-VTGRARRLLVELGVIPGLVELFHIGDWTTKLVAGNT 244
           V  +          +C AI  L         ++V+ GV+P LV+L    +      A   
Sbjct: 238 VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA 297

Query: 245 LGVVAAHVEYIT-PVAEAGAIPLYAELLQGPDSTG-KEISEDVFCILAVSEANANAIAEH 302
           +G +    +  T  V +AGA+ ++  LL  P +   KE +  +  I A  +     +  H
Sbjct: 298 IGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNH 357

Query: 303 -----LVRILREGDNEANAAAADVLWDLA--GYKHSVPVIRNSGAIPILVNLLRGENDEV 355
                LV +L + D +    AA  + +    G    +  + + G I  L+NLL  ++ ++
Sbjct: 358 GLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKI 417

Query: 356 REKVSGAIA-------QLSYNEADRVALADAGAVPIMIELLHDESEELRDNAAESLIN-F 407
            + +  AI+       +L   E   + + + G +  +  L   E+E +   +   +   F
Sbjct: 418 IQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYF 477

Query: 408 SEDPLQHERISEAIGIPSFQ 427
           S +  + + +        F 
Sbjct: 478 SVEEEEDQNVVPETTSEGFA 497

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score =  115 bits (288), Expect = 7e-28
 Identities = 64/416 (15%), Positives = 140/416 (33%), Gaps = 31/416 (7%)

Query: 41  APQDILAATIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQADGALATEIGQSGVIN 100
           + Q  +  ++  + + +  NN         Q  A    +++ S+        I ++G+I 
Sbjct: 50  SNQGTVNWSVEDIVKGINSNN------LESQLQATQAARKLLSREKQPPIDNIIRAGLIP 103

Query: 101 SVLRLFPQSDDSFRTVL-VKCLRVFVTFGNENRVIVARNGGLEIVIDLLNSCNDGTRRYL 159
             +    ++D S         L    +  +E    V   G +   I LL S +       
Sbjct: 104 KFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQA 163

Query: 160 LEILSALALLREVRRVLI-CLGGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRAR---- 214
           +  L  +A      R L+   G +  L+  ++   + +            ++   R    
Sbjct: 164 VWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNP 223

Query: 215 --RLLVELGVIPGLVELFHIGDWTTKLVAGNTLGVVAAH-VEYITPVAEAGAIPLYAELL 271
              L     ++P LV L H  D      +   +  +     E I  V + G +P   +LL
Sbjct: 224 APPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLL 283

Query: 272 QGPDSTGK-EISEDVFCILAVSEANANAIAEH-----LVRILREGDNEANAAAADVLWDL 325
              +          +  I+  ++     + +         +L          A   + ++
Sbjct: 284 GATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNI 343

Query: 326 -AGYKHSVPVIRNSGAIPILVNLLRGENDEVREKVSGAIAQLSY--NEADRVALADAGAV 382
            AG +  +  + N G +P LV +L   + + +++ + AI   +        V L   G +
Sbjct: 344 TAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGII 403

Query: 383 PIMIELLHDESEELRDNAAESLIN-------FSEDPLQHERISEAIGIPSFQSMQS 431
             ++ LL  +  ++     +++ N         E       I E  G+   +++Q 
Sbjct: 404 EPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQR 459

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score =  101 bits (253), Expect = 2e-23
 Identities = 56/292 (19%), Positives = 109/292 (37%), Gaps = 18/292 (6%)

Query: 156 RRYLLEILSALALLREVRRVLICLGGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRAR- 214
              L       A+             +  +V+ ++  ++ S+ +A QA   L    +   
Sbjct: 33  SPDLGTDDDDKAMADIGSNQGTVNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPP 92

Query: 215 -RLLVELGVIPGLVE-LFHIGDWTTKLVAGNTLGVVAAHVEYIT-PVAEAGAIPLYAELL 271
              ++  G+IP  V  L        +  +   L  +A+     T  V + GAIP +  LL
Sbjct: 93  IDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLL 152

Query: 272 QGPDSTGKEISEDVFCILAV-SEANANAIAEH-----LVRILREGDNEA--NAAAADVLW 323
             P +   E +      +A    A  + + +H     L+ +L   D          ++ W
Sbjct: 153 ASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTW 212

Query: 324 DLA----GYKHSVPVIRNSGAIPILVNLLRGENDEVREKVSGAIAQLSYNEADRV-ALAD 378
            L+        + P+      +P LV LL   + EV      AI+ L+    +R+  +  
Sbjct: 213 TLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVK 272

Query: 379 AGAVPIMIELLHDESEELRDNAAESLIN-FSEDPLQHERISEAIGIPSFQSM 429
            G VP +++LL      +   A  ++ N  +    Q +++ +A  +  F S+
Sbjct: 273 KGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSL 324

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score = 97.0 bits (241), Expect = 8e-22
 Identities = 58/326 (17%), Positives = 110/326 (33%), Gaps = 19/326 (5%)

Query: 125 VTFGNENRVIVARNGGLEIVIDLLNSCNDGTRRYLLEILSALALLREVRRV--LICLGGL 182
               +        N  +E ++  +NS N  ++    +    L    +   +  +I  G +
Sbjct: 43  KAMADIGSNQGTVNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLI 102

Query: 183 RYLVEAVSFGSMVSRER-ACQAIGLLA-VTGRARRLLVELGVIPGLVELFHIGDWTTKLV 240
              V  +        +  +  A+  +A  T    + +V+ G IP  + L           
Sbjct: 103 PKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQ 162

Query: 241 AGNTLGVVAAH-VEYITPVAEAGAIPLYAELLQGPDSTGKEISEDVFCILAVSEANAN-- 297
           A   LG +A     +   V + GAI     LL  PD +             +S    N  
Sbjct: 163 AVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKN 222

Query: 298 ---------AIAEHLVRILREGDNEANAAAADVLWDLAGYKHS-VPVIRNSGAIPILVNL 347
                     I   LVR+L   D E  A +   +  L    +  + ++   G +P LV L
Sbjct: 223 PAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKL 282

Query: 348 LRGENDEVREKVSGAIAQL-SYNEADRVALADAGAVPIMIELLHDESEELRDNAAESLIN 406
           L      +      AI  + +  +     + DAGA+ +   LL +    ++  A  ++ N
Sbjct: 283 LGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSN 342

Query: 407 FSEDPLQH-ERISEAIGIPSFQSMQS 431
            +       +++     +P    + S
Sbjct: 343 ITAGRQDQIQQVVNHGLVPFLVGVLS 368

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score =  115 bits (289), Expect = 3e-28
 Identities = 79/426 (18%), Positives = 140/426 (32%), Gaps = 39/426 (9%)

Query: 17  QAVVSGSEALQ---VKALTKLARVSKFAPQDILAAT---IPILARLLGENNFSGNLTRSI 70
           + + S S   Q    +   KL       P D + +T   +      L           ++
Sbjct: 27  EMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKEN-----CTL 81

Query: 71  QQAAAYCLKQIASQADGALATEIGQSGVINSVLRLFPQSDDSFRTVLVKCLRVFVTFGNE 130
           Q  +A+ L  IAS  +      + Q+G +   + L     +  +   V  L         
Sbjct: 82  QFESAWVLTNIASG-NSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTM 140

Query: 131 NRVIVARNGGLEIVIDLLNSCNDGT-RRYLLEILSALALLREVRRVLICL-GGLRYLVEA 188
            R  V     L  ++ L +  N  T  R  +  LS L   +        +   L  L   
Sbjct: 141 CRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWL 200

Query: 189 VSFGSMVSRERACQAIG-LLAVTGRARRLLVELGVIPGLVELFHIGDWTTKLVAGNTLGV 247
           +          AC A+  L        + +++ GV   LVEL    D+     A   +G 
Sbjct: 201 LFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGN 260

Query: 248 VAAHVEYITP-VAEAGAIPLYAELLQGPDSTG-KEISEDVFCILAVSEANANAIAEH--- 302
           +    +  T  +    A+     LL  P  +  KE    +  I A + A    + +    
Sbjct: 261 IVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIF 320

Query: 303 --LVRILREGDNEANAAAADVLWDLA--GYKHSVPVIRNSGAIPILVNLLRGENDEVREK 358
             L+ IL+  +      AA  + +    G    +  +   G I  L +LL   + ++ + 
Sbjct: 321 PALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQV 380

Query: 359 VSGA---IAQLSYNEADRVALA---------DAGAVPIMIELLHDESEELRDNAAESLIN 406
                  I +L   EA R             +A  +  +  L   E++E+   A + LI 
Sbjct: 381 ALNGLENILRLGEQEAKRNGTGINPYCALIEEAYGLDKIEFLQSHENQEIYQKAFD-LIE 439

Query: 407 --FSED 410
             F  +
Sbjct: 440 HYFGTE 445

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score =  108 bits (271), Expect = 8e-26
 Identities = 62/393 (15%), Positives = 129/393 (32%), Gaps = 52/393 (13%)

Query: 47  AATIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQADGA-LATEIGQSGVINSVLRL 105
                 +  ++   +         Q +A    +++ S+     +   I   GV+   +  
Sbjct: 19  GVITSDMIEMIFSKSPE------QQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEF 72

Query: 106 FPQSDDSFRTVLV-KCLRVFVTFGNENRVIVARNGGLEIVIDLLNSCNDGTRRYLLEILS 164
             + ++          L    +  +    IV + G + I I+LL+S  +  +   +  L 
Sbjct: 73  LKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALG 132

Query: 165 ALALLREVRRVLI-CLGGLRYLVEAVSFGSMVSRER-ACQAIGLLAVTGRARRLLVEL-G 221
            +A    + R  +     L  L++  S  + ++  R A  A+  L           ++  
Sbjct: 133 NIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSP 192

Query: 222 VIPGLVELFHIGDWTTKLVAGNTLGVVAAHV-EYITPVAEAGAIPLYAELLQGPDSTGKE 280
            +  L  L  + D      A   L  ++    + I  V +AG                  
Sbjct: 193 CLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCR--------------- 237

Query: 281 ISEDVFCILAVSEANANAIAEHLVRILREGDNEANAAAADVLWDLA-GYKHSVPVIRNSG 339
                                 LV +L   D +  + A   + ++  G      VI N  
Sbjct: 238 ---------------------RLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCS 276

Query: 340 AIPILVNLLRGENDEVREKVSGAIAQL-SYNEADRVALADAGAVPIMIELLHDESEELRD 398
           A+  L++LL    + ++++    I+ + + N A    + DA   P +I +L       R 
Sbjct: 277 ALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRK 336

Query: 399 NAAESLINFSE--DPLQHERISEAIGIPSFQSM 429
            AA ++ N +      Q + + E   I     +
Sbjct: 337 EAAWAITNATSGGSAEQIKYLVELGCIKPLCDL 369

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score =  104 bits (261), Expect = 4e-26
 Identities = 48/233 (20%), Positives = 95/233 (40%), Gaps = 40/233 (17%)

Query: 180 GGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRARRLLV-ELGVIPGLVELFHIGDWTTK 238
             L  +V+ ++       + A + +  +A  G  +   V + G +P LV+L    +    
Sbjct: 12  SELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQIL 71

Query: 239 LVAGNTLGVVAAH-VEYITPVAEAGAIPLYAELLQGPDSTGKEISEDVFCILAVSEANAN 297
             A   L  +A+   E I  V +AGA+P                                
Sbjct: 72  QEALWALSNIASGGNEQIQAVIDAGALP-------------------------------- 99

Query: 298 AIAEHLVRILREGDNEANAAAADVLWDLA-GYKHSVPVIRNSGAIPILVNLLRGENDEVR 356
                LV++L   + +    A   L ++A G    +  + ++GA+P LV LL   N+++ 
Sbjct: 100 ----ALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQIL 155

Query: 357 EKVSGAIAQL-SYNEADRVALADAGAVPIMIELLHDESEELRDNAAESLINFS 408
           ++   A++ + S     + A+ +AGA+  + +L   E+E+++  A E+L    
Sbjct: 156 QEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ 208

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score = 86.1 bits (214), Expect = 1e-19
 Identities = 39/183 (21%), Positives = 82/183 (44%), Gaps = 9/183 (4%)

Query: 258 VAEAGAIPLYAELLQGPDSTGKEISEDVFCILAV-SEANANAIAE-----HLVRILREGD 311
                 +P   + L  PD    + +      +A        A+ +      LV++L   +
Sbjct: 8   HHHGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPN 67

Query: 312 NEANAAAADVLWDLA-GYKHSVPVIRNSGAIPILVNLLRGENDEVREKVSGAIAQLSYNE 370
            +    A   L ++A G    +  + ++GA+P LV LL   N+++ ++   A++ ++   
Sbjct: 68  EQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG 127

Query: 371 AD-RVALADAGAVPIMIELLHDESEELRDNAAESLINFSED-PLQHERISEAIGIPSFQS 428
            +   A+ DAGA+P +++LL   +E++   A  +L N +     Q + + EA  +   + 
Sbjct: 128 NEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQ 187

Query: 429 MQS 431
           +QS
Sbjct: 188 LQS 190

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score = 80.0 bits (198), Expect = 1e-17
 Identities = 42/202 (20%), Positives = 80/202 (39%), Gaps = 3/202 (1%)

Query: 92  EIGQSGVINSVLRLFPQSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLNSC 151
                  +  +++     D       ++ L    + GNE    V   G L  ++ LL+S 
Sbjct: 7   HHHHGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSP 66

Query: 152 NDGTRRYLLEILSALALLREV-RRVLICLGGLRYLVEAVSFGSMVSRERACQAIGLLAVT 210
           N+   +  L  LS +A       + +I  G L  LV+ +S  +    + A  A+  +A  
Sbjct: 67  NEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG 126

Query: 211 GRA-RRLLVELGVIPGLVELFHIGDWTTKLVAGNTLGVVAAH-VEYITPVAEAGAIPLYA 268
           G    + +++ G +P LV+L    +      A   L  +A+   E    V EAGA+    
Sbjct: 127 GNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLE 186

Query: 269 ELLQGPDSTGKEISEDVFCILA 290
           +L    +   ++ +++    L 
Sbjct: 187 QLQSHENEKIQKEAQEALEKLQ 208

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score = 49.6 bits (119), Expect = 5e-07
 Identities = 34/151 (22%), Positives = 63/151 (41%), Gaps = 11/151 (7%)

Query: 21  SGSEALQVKALTKLARVSKFAP---QDILAA-TIPILARLLGENNFSGNLTRSIQQAAAY 76
           S +E +  +AL  L+ ++       Q ++ A  +P L +LL   N        I Q A +
Sbjct: 65  SPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQ------ILQEALW 118

Query: 77  CLKQIASQADGALATEIGQSGVINSVLRLFPQSDDSFRTVLVKCLRVFVTFGNENRVIVA 136
            L  IAS  +      +  +G + ++++L    ++      +  L    + GNE +  V 
Sbjct: 119 ALSNIASGGN-EQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVK 177

Query: 137 RNGGLEIVIDLLNSCNDGTRRYLLEILSALA 167
             G LE +  L +  N+  ++   E L  L 
Sbjct: 178 EAGALEKLEQLQSHENEKIQKEAQEALEKLQ 208

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810

 Score =  101 bits (252), Expect = 6e-23
 Identities = 47/293 (16%), Positives = 101/293 (34%), Gaps = 17/293 (5%)

Query: 129 NENRVIVARNGGLEIVIDLLNSCNDGTRRYLLEILSALALLREVRRVLICLGGLRYLVEA 188
           N+   ++A  G    +  L  + +  ++  +  +L+A+  L+E+R  ++  GG++ L+  
Sbjct: 485 NKRITVLANEGITTALCALAKTESHNSQELIARVLNAVCGLKELRGKVVQEGGVKALLRM 544

Query: 189 VSFGSMVSRERACQAIGLLAVTGRARRLL---VELGVIPGLVELFHIGDWTT-KLVAGNT 244
              G+   +  A QA+  + +T            L VI  L+ L            +   
Sbjct: 545 ALEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMA 604

Query: 245 LGVVAAHVE-YITPVAEAGAIPLYAELLQGPDSTGKEISEDVFCILAVSEANANAIAEH- 302
           L  +A+  E     + +   +      L          +    C L +SE        + 
Sbjct: 605 LTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKMFEGNN 664

Query: 303 -----LVRILREGDNEANAAAADVLWDLAGYKHSV--PVIRNSGAIPILVNLLRGENDEV 355
                L  +  + D E   A A  L  +          ++  +  + IL  L+   +  V
Sbjct: 665 DRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAV 724

Query: 356 REKVSGAIAQLSYNEAD-RVALADAGAVPIMIELL---HDESEELRDNAAESL 404
           + +    I  +     +    L +   + ++  L     D   + R+ A + L
Sbjct: 725 QHRGIVIILNMINAGEEIAKKLFETDIMELLSGLGQLPDDTRAKAREVATQCL 777

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810

 Score = 96.5 bits (239), Expect = 2e-21
 Identities = 53/354 (14%), Positives = 122/354 (34%), Gaps = 14/354 (3%)

Query: 65  NLTRSIQQAAAYCLKQIASQADGALATEIGQSGVINSVLRLFPQSDDSFRTVLVKCLR-V 123
           ++T S    A+ CL +I        A       +   +       D   +  +   +  +
Sbjct: 215 DITGSSSTIASVCLARIYENMYYDEAKARFTDQIDEYIKDKLLAPDMESKVRVTVAITAL 274

Query: 124 FVTFGNENRVIVARNGGLEIVIDLLNSCNDGTRRYLLEILSALALLREVRRVLICLGGLR 183
                +    +VAR G L++++ +  + ++  +R   E L A +  ++  +  +C  G+ 
Sbjct: 275 LNGPLDVGNQVVAREGILQMILAMATTDDELQQRVACECLIAASSKKDKAK-ALCEQGVD 333

Query: 184 YLVEAVSFGSMVSRERACQAIGLLAVTGRARRLLVEL--GVIPGLVELF------HIGDW 235
            L       +   R RA   +  L   G     +     G    L E           D 
Sbjct: 334 ILKRLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDK 393

Query: 236 TTKLVAGNTLGVVAAHVEY-ITPVAEAGAIPLYAELLQGPDSTGKEISEDVFCILAVSEA 294
             +  A + L  +    E     + +  +I    +L +G + +        F  L  +  
Sbjct: 394 DIRRWAADGLAYLTLDAECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYE 453

Query: 295 NANAIAEHLVRILREGDNEANAAAADVLWDLAGYKHSVPVIRNSGAIPILVNLLRGENDE 354
               + E ++ + +      +      L D+      + V+ N G    L  L + E+  
Sbjct: 454 KQEMLPE-MIELAKFAKQ--HIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHN 510

Query: 355 VREKVSGAIAQLSYNEADRVALADAGAVPIMIELLHDESEELRDNAAESLINFS 408
            +E ++  +  +   +  R  +   G V  ++ +  + +E+ + +A ++L    
Sbjct: 511 SQELIARVLNAVCGLKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIG 564

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810

 Score = 68.3 bits (166), Expect = 2e-12
 Identities = 64/444 (14%), Positives = 142/444 (31%), Gaps = 44/444 (9%)

Query: 28  VKALTKLARVSKFAPQDIL-AATIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQAD 86
           V  +  L   S    + +L    +P   R+L + +       +    A +CL+ I +   
Sbjct: 71  VHLVAALCENSVERTKGVLTELGVPWFMRVLDQKH------ENCVSTAQFCLQTILNALS 124

Query: 87  GALATEIGQSGVINSVLRLFPQSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVID 146
           G        S     +     +  D+  T LV  +       +      AR+G +E++  
Sbjct: 125 GLKNKPD--SKPDKELCTRNNREIDTLLTCLVYSIT------DRTISGAARDGVIELITR 176

Query: 147 LLNSCNDGTRRYLLEILSALALLREVRRVLICLGGLRYLVEAVSFGSMVSRERACQAIGL 206
            ++         L+E       +R + R+L     L       +    ++   +  A   
Sbjct: 177 NVHYTALEWAERLVE-------IRGLCRLLDVCSELEDYKYESAM--DITGSSSTIASVC 227

Query: 207 LA-----VTGRARRLLVELGVIPGLVELFHIGDWTTKLVAGNTLGVVAAHVEYITP--VA 259
           LA     +     +      +   + +     D  +K+     +  +      +    VA
Sbjct: 228 LARIYENMYYDEAKARFTDQIDEYIKDKLLAPDMESKVRVTVAITALLNGPLDVGNQVVA 287

Query: 260 EAGAIPLYAELLQGPDSTGKEISEDVFCILAVSEANANAIAEH----LVRILREGDNEAN 315
             G + +   +    D   + ++ +     +  +  A A+ E     L R+    ++   
Sbjct: 288 REGILQMILAMATTDDELQQRVACECLIAASSKKDKAKALCEQGVDILKRLYHSKNDGIR 347

Query: 316 AAAADVLWDLAGYKHSVPVIR--NSGAIPILVNLLR------GENDEVREKVSGAIAQLS 367
             A   L  L  Y      IR    GA   L    R      G++ ++R   +  +A L+
Sbjct: 348 VRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLT 407

Query: 368 YNEADRVALA-DAGAVPIMIELLHDESEELRDNAAESLINFSEDPLQHERISEAIGIPSF 426
            +   +  L  D  ++  +++L    ++        + +N      + E + E I +  F
Sbjct: 408 LDAECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKF 467

Query: 427 QSMQSRLTRIRASDDLMARSMRRM 450
                         D + + +  +
Sbjct: 468 AKQHIPEEHELDDVDFINKRITVL 491

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score = 87.2 bits (215), Expect = 1e-18
 Identities = 56/433 (12%), Positives = 128/433 (29%), Gaps = 60/433 (13%)

Query: 49  TIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQADGALATEIGQSGVINSVLRLFPQ 108
           TIP   + L   +         Q   AY ++    Q + A   ++ Q G I  ++ L   
Sbjct: 3   TIPKAVQYLSSQDEK------YQAIGAYYIQHTCFQDESA-KQQVYQLGGICKLVDLLRS 55

Query: 109 SDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLNSCND-GTRRYLLEILSALA 167
            + + +      LR  V     N++   R  G+   + LL    +   ++ L  +L  L+
Sbjct: 56  PNQNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLS 115

Query: 168 LLREVRRVLICLGGLRYLVEAV----------------SFGSMVSRERACQAIGLLAVTG 211
              E++   +    L  L + V                          A   +  L+   
Sbjct: 116 STDELKEE-LIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSAD 174

Query: 212 RARRLLVEL-GVIPGLVELFHIGDWTTKLVAGNTLGVVAAHVEYITPVAEAGAIPLYAEL 270
             R+ +    G+I  L+         ++    +    +         +            
Sbjct: 175 AGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLE 234

Query: 271 LQGPDSTGKEISEDVFCILAVSEANANAIA---------------------EHLVRILRE 309
               ++  ++ S   F   +    N N                           + ++ +
Sbjct: 235 YNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGK 294

Query: 310 GDNEANA-AAADVLWDLA------GYKHSVPVIRNSGAIPILVNLLRGENDEVREKVSGA 362
              +A   A A  L +L           S  +      +P +  LL+  N +V    +  
Sbjct: 295 SKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASL 354

Query: 363 IAQLSYNEADRVALADAGAVPIMIELL-----HDESEELRDNAAESLINFS-EDPLQHER 416
           ++ +S +      + +     +   L         SE++  +A  ++ N     P   ++
Sbjct: 355 LSNMSRHPLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQ 414

Query: 417 ISEAIGIPSFQSM 429
              +  + +  ++
Sbjct: 415 YFSSSMLNNIINL 427

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score = 78.7 bits (193), Expect = 7e-16
 Identities = 55/440 (12%), Positives = 127/440 (28%), Gaps = 63/440 (14%)

Query: 21  SGSEALQVKA---LTKLARVSKFAPQDILAA-TIPILARLLGENNFSGNLTRSIQQAAAY 76
           S  E  Q      +       + A Q +     I  L  LL   N      +++QQAAA 
Sbjct: 13  SQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPN------QNVQQAAAG 66

Query: 77  CLKQIASQADGALATEIGQSGVINSVLRLFPQSDDSFRTVLVKCLRVFVTFGNENRVIVA 136
            L+ +  ++         Q+G+  +V  L    +   +  L   L   ++  +E +  + 
Sbjct: 67  ALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWN-LSSTDELKEELI 125

Query: 137 RNGGLEIVIDLL----------------NSCNDGTRRYLLEILSALALLREVRRVLICLG 180
               L ++ D +                   +          L  L+     R+ +    
Sbjct: 126 A-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNYS 184

Query: 181 GLRYLVEAVSFGSMVSRERACQAIGLLAVTGRARRLLVELGVIPGLVELFHIGDWTTKLV 240
           GL   + A     + +     +++             ++  V     +L +         
Sbjct: 185 GLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEK 244

Query: 241 AGNT-----------------LGVVAAHVEYITPVAEAGAIPLYAELLQGPDSTG-KEIS 282
           +                    L     + +    +  + AI  Y  L+         E  
Sbjct: 245 SSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEAC 304

Query: 283 EDVFCILAVSEANANA-----------IAEHLVRILREGDNEANAAAADVLWDLAGYKHS 331
                 L  S+   ++               + R+L+ G+++   + A +L +++ +   
Sbjct: 305 AGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLL 364

Query: 332 VPVIRNSGAIPILVNLLRG-----ENDEVREKVSGAIAQLSYNEAD-RVALADAGAVPIM 385
             V+ N     +   L         ++++       +  L  ++         +  +  +
Sbjct: 365 HRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNI 424

Query: 386 IELLHDESEELRDNAAESLI 405
           I L    +      AA  L+
Sbjct: 425 INLCRSSASPKAAEAARLLL 444

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score = 71.8 bits (175), Expect = 1e-13
 Identities = 27/155 (17%), Positives = 51/155 (32%), Gaps = 3/155 (1%)

Query: 301 EHLVRILREGDNEANAAAADVLWDLAGYKHSV-PVIRNSGAIPILVNLLRGENDEVREKV 359
              V+ L   D +  A  A  +        S    +   G I  LV+LLR  N  V++  
Sbjct: 5   PKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAA 64

Query: 360 SGAIAQLSYNEAD-RVALADAGAVPIMIELL-HDESEELRDNAAESLINFSEDPLQHERI 417
           +GA+  L +     ++       +   + LL    + E++      L N S      E +
Sbjct: 65  AGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEEL 124

Query: 418 SEAIGIPSFQSMQSRLTRIRASDDLMARSMRRMSI 452
                      +    +     +  M+R +    +
Sbjct: 125 IADALPVLADRVIIPFSGWCDGNSNMSREVVDPEV 159

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584

 Score = 81.5 bits (200), Expect = 1e-16
 Identities = 51/421 (12%), Positives = 127/421 (30%), Gaps = 50/421 (11%)

Query: 41  APQDILAATIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQADGALATEIGQSGVIN 100
            P +     +P +  +LG    +      ++  AA  L+ +  + D     ++ +   I 
Sbjct: 41  PPPNWRQPELPEVIAMLGFRLDA------VKSNAAAYLQHLCYRNDKVKT-DVRKLKGIP 93

Query: 101 SVLRLFPQSDDSFRTVLVKCLRVFVTFGN-ENRVIVARNGGLEIVIDLLNSCND-GTRRY 158
            ++ L               L+      + +N++ +    G+  ++ LL    D      
Sbjct: 94  VLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLTEV 153

Query: 159 LLEILSALALLREVRRVLICLGGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRARRLLV 218
           +   L  L+    ++  ++         E +   S   RE                    
Sbjct: 154 ITGTLWNLSSHDSIKMEIVDHALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTA 213

Query: 219 ELGVIPGLVELFHIGDWTTKLVAGNTLGVVAAHVEYITPVAEAG---------AIPLYAE 269
                 G +          +       G+V A +  +                 + L   
Sbjct: 214 ------GCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRN 267

Query: 270 LLQGPDSTGKEISEDVFCILAVSEANANA------------IAEHLVRILREGDNEAN-A 316
           L         +          V+     +            +    + +L+E    A   
Sbjct: 268 LSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILE 327

Query: 317 AAADVLWDLAGYKHSVPV-----IRNSGAIPILVNLLRGENDEVREKVSGAIAQLSYNEA 371
           A+A  + +L   + +        +R   A+  + +LL  E++ V +  SGA+  L+ +  
Sbjct: 328 ASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDAR 387

Query: 372 DRVALADAGAVPIMIELLHDESEELRDNAAESLIN--------FSEDPLQHERISEAIGI 423
           ++  +       ++  L   +     + + +++I+         +E+    +++ E  GI
Sbjct: 388 NKELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRETQGI 447

Query: 424 P 424
            
Sbjct: 448 E 448

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584

 Score = 74.2 bits (181), Expect = 3e-14
 Identities = 66/473 (13%), Positives = 143/473 (30%), Gaps = 48/473 (10%)

Query: 21  SGSEALQVKA---LTKLARVSKFAPQDILAA-TIPILARLLGENNFSGNLTRSIQQAAAY 76
              +A++  A   L  L   +     D+     IP+L  LL          + +   A  
Sbjct: 59  FRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPK------KEVHLGACG 112

Query: 77  CLKQIASQADGALATEIGQSGVINSVLRLFPQSDDSFRTVLVKCLRVFVTFGNENRVIVA 136
            LK I+   D      I     + +++RL  ++ D   T ++      ++  +  ++ + 
Sbjct: 113 ALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIV 172

Query: 137 RNGGLEIVIDLLNSCNDGTRRYLLEILSALALLREVRRVLICLGGLRYLVEAVSFGSMVS 196
            +    +  +++   +   R    +          V       G LR +    S      
Sbjct: 173 DHALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLT--NTAGCLRNVSSERSEARRKL 230

Query: 197 RERACQAIGLLAV--TGRARRLLVELGVIPGLVELFHIGDWTTKLVAGNTLG-------- 246
           RE       L+ +      ++      V   +  L ++     + +              
Sbjct: 231 RECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPNVA 290

Query: 247 --VVAAHVEYITPVAEAGAIPLYAELLQGPDSTG-KEISEDVFCILA-----VSEANANA 298
                +       + +   + +Y  LL+   +    E S      L            +A
Sbjct: 291 NNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSA 350

Query: 299 IAEH-----LVRILREGDNEANAAAADVLWDLAGYKHSVPVIRNSGAIPILVNLLRGEN- 352
           + +      +  +L         AA+  L +LA    +  +I    AIP LV  L G   
Sbjct: 351 LRQEKALSAIADLLTNEHERVVKAASGALRNLAVDARNKELIGK-HAIPNLVKNLPGGQQ 409

Query: 353 -------DEVREKVSGAIAQLSYNEAD-RVALADAGAVPIMIELLH--DESEELRDNAAE 402
                  ++    +   I ++     +    L +   +  ++ +    + SE+    AA 
Sbjct: 410 NSSWNFSEDTVISILNTINEVIAENLEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAAL 469

Query: 403 SLINFSED-PLQHERISEAIGIPSFQSMQSRLTRIRASDDLMARSMRRMSIEQ 454
            L        L+     E      FQ   +  +R ++S      ++  +   Q
Sbjct: 470 VLQTIWGYKELRKPLEKEGWKKSDFQVNLNNASRSQSSHSYDDSTLPLIDRNQ 522

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584

 Score = 61.1 bits (147), Expect = 3e-10
 Identities = 37/251 (14%), Positives = 75/251 (29%), Gaps = 40/251 (15%)

Query: 192 GSMVSRERACQAIGLLAVTGRARRLLVELGVIPGLVELFHIGDWTTKLVAGNTLGVVAAH 251
             +   ER   A       G           +P ++ +        K  A   L  +   
Sbjct: 19  APLAQHERGSLASLDSLRKGGPPPPNWRQPELPEVIAMLGFRLDAVKSNAAAYLQHLCYR 78

Query: 252 -VEYITPVAEAGAIPLYAELLQGPDSTGKEISEDVFCILAVSEANANAIAEHLVRILREG 310
             +  T V +   IP                                     LV +L   
Sbjct: 79  NDKVKTDVRKLKGIP------------------------------------VLVGLLDHP 102

Query: 311 DNEANAAAADVLWDLAGYKHSV--PVIRNSGAIPILVNLLR-GENDEVREKVSGAIAQLS 367
             E +  A   L +++  +       I+N   +P LV LLR   + ++ E ++G +  LS
Sbjct: 103 KKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLS 162

Query: 368 YNEADRVALADAGAVPIMIELLHDESEELRDNAAESLINFSEDPLQHERISEAIGIPSFQ 427
            +++ ++ + D     +  E++   S   R+   +      E        +  +   S +
Sbjct: 163 SHDSIKMEIVDHALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSE 222

Query: 428 SMQSRLTRIRA 438
             ++R      
Sbjct: 223 RSEARRKLREC 233

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296

 Score = 73.9 bits (181), Expect = 8e-15
 Identities = 22/189 (11%), Positives = 63/189 (33%), Gaps = 9/189 (4%)

Query: 262 GAIPLYAELLQGPDSTGKEISEDVFCILA-VSEANANAIAEH-----LVRILR-EGDNEA 314
           G   L    L+   +  +  +  +    +    A    +        L+R+L  +  +  
Sbjct: 82  GMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTV 141

Query: 315 NAAAADVLWDLA-GYKHSVPVIRNSGAIPILVNLLRGENDEVREKVSGAIAQLSYNEAD- 372
              A   +  L    +  +          +L+  ++ +  +++ K +  +  L     + 
Sbjct: 142 RVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEH 201

Query: 373 RVALADAGAVPIMIELLHDESEELRDNAAESLINFSEDPLQHERISEAIGIPSFQSMQSR 432
           +  L   G V  ++ L+  E     ++   +L +   D  Q  R      +   + ++ R
Sbjct: 202 KGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHR 261

Query: 433 LTRIRASDD 441
              ++  ++
Sbjct: 262 CQLLQQHEE 270

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296

 Score = 58.9 bits (142), Expect = 7e-10
 Identities = 30/208 (14%), Positives = 64/208 (30%), Gaps = 6/208 (2%)

Query: 67  TRSIQQAAAYCLKQIASQADGALATEIGQSGVINSVLRLFPQSDDS-FRTVLVKCLRVFV 125
            +  ++ A   L  +    D   A +  Q   ++ ++  + ++  +  R    + +    
Sbjct: 53  DQQEREGALELLADLCENMD--NAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCS 110

Query: 126 TFGNENRVIVARNGGLEIVIDLLNSCND-GTRRYLLEILSALALLREVRRVLIC-LGGLR 183
                 +  V   G L  ++ LL+       R   L  +S L   +E   +    L G  
Sbjct: 111 QNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFS 170

Query: 184 YLVEAVSFGSMVSRERACQAIGLLAVTGRA-RRLLVELGVIPGLVELFHIGDWTTKLVAG 242
            L+ A+       + ++   +  L V     +  L  +G++  LV L             
Sbjct: 171 VLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVL 230

Query: 243 NTLGVVAAHVEYITPVAEAGAIPLYAEL 270
             L  +               + L   L
Sbjct: 231 GALCSLVTDFPQGVRECREPELGLEELL 258

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296

 Score = 56.2 bits (135), Expect = 5e-09
 Identities = 25/161 (15%), Positives = 54/161 (33%), Gaps = 9/161 (5%)

Query: 50  IPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQADGALATEIGQSGVINSVLRLF-PQ 108
             ++ R L            ++  AA  +   + Q   A+  ++   G +  +LRL    
Sbjct: 84  HLLVGRYLEAGA------AGLRWRAAQLIGTCS-QNVAAIQEQVLGLGALRKLLRLLDRD 136

Query: 109 SDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLNSCNDGTRRYLLEILSALAL 168
           + D+ R   +  +   V       +   R  G  +++  +       +     +L  L +
Sbjct: 137 ACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLV 196

Query: 169 LREVRRVLIC-LGGLRYLVEAVSFGSMVSRERACQAIGLLA 208
                +  +C +G ++ LV  V        E    A+  L 
Sbjct: 197 GHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLV 237

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296

 Score = 51.9 bits (124), Expect = 2e-07
 Identities = 29/185 (15%), Positives = 57/185 (30%), Gaps = 5/185 (2%)

Query: 130 ENRVIVARNGGLE-IVIDLLNSCNDGTRRYLLEILSALALL-REVRRVLICLGGLRYLVE 187
           +N     +  G+  +V   L +   G R    +++   +     ++  ++ LG LR L+ 
Sbjct: 72  DNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLR 131

Query: 188 AVSFGSMVS-RERACQAIGLLAVTGR-ARRLLVELGVIPGLVELFHIGDWTTKLVAGNTL 245
            +   +  + R +A  AI  L           + L     L+          K+ +   L
Sbjct: 132 LLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLL 191

Query: 246 GVVAAH-VEYITPVAEAGAIPLYAELLQGPDSTGKEISEDVFCILAVSEANANAIAEHLV 304
             +     E+   +   G +     L++   S   E      C L               
Sbjct: 192 QNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPE 251

Query: 305 RILRE 309
             L E
Sbjct: 252 LGLEE 256

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233

 Score = 71.1 bits (174), Expect = 3e-14
 Identities = 33/172 (19%), Positives = 66/172 (38%), Gaps = 6/172 (3%)

Query: 292 SEANANAIAEHLVRILREGDNEAN--AAAADVLWDLAGYKHSV-PVIRNSGAIPILVNLL 348
           S A+     E  V +L       +  +AAA  +      K      +     I  L+ LL
Sbjct: 2   SNADMEMTLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLL 61

Query: 349 RGENDEVREKVSGAIAQLSY-NEADRVALADAGAVPIMIELL-HDESEELRDNAAESLIN 406
           + +N++V+  V GA+  L + +  +++ +A+   VP ++++L      E +      L N
Sbjct: 62  KVQNEDVQRAVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWN 121

Query: 407 FS-EDPLQHERISEAIGIPSFQSMQSRLTRIRASDDLMARSMRRMSIEQLTW 457
            S  D L++  I+EA+   +   +                 +       +T 
Sbjct: 122 LSSNDKLKNLMITEALLTLTENIIIPFSGWPEGDYPKANGLLDFDIFYNVTG 173

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233

 Score = 49.6 bits (118), Expect = 5e-07
 Identities = 39/223 (17%), Positives = 77/223 (34%), Gaps = 23/223 (10%)

Query: 46  LAATIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQADGALATEIGQSGVINSVLRL 105
           +  T+     +L     + ++  S   AAA  ++    Q   A    + Q   I  +L+L
Sbjct: 6   MEMTLERAVSMLE----ADHMLPSRISAAATFIQHECFQKSEA-RKRVNQLRGILKLLQL 60

Query: 106 FPQSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLNSCND-GTRRYLLEILS 164
               ++  +  +   LR  V   N+N++ VA   G+  ++ +L    D  T++ +  +L 
Sbjct: 61  LKVQNEDVQRAVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLW 120

Query: 165 ALALLREVRRVLICLGGLRYLVEAVSFGSMVSRERACQAIGLLAVTG------------- 211
            L+   +++ ++I    L      +   S        +A GLL                 
Sbjct: 121 NLSSNDKLKNLMITEALLTLTENIIIPFSGWPEGDYPKANGLLDFDIFYNVTGCLRNMSS 180

Query: 212 ---RARRLLVEL-GVIPGLVELFHIGDWTTKLVAGNTLGVVAA 250
                R+ +    G+I  LV          +     T   V  
Sbjct: 181 AGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCI 223

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233

 Score = 46.1 bits (109), Expect = 8e-06
 Identities = 41/239 (17%), Positives = 80/239 (33%), Gaps = 30/239 (12%)

Query: 141 LEIVIDLLNSCN--DGTRRYLLEILSALALL-REVRRVLICLGGLRYLVEAVSFGSMVSR 197
           LE  + +L + +            +        E R+ +  L G+  L++ +   +   +
Sbjct: 10  LERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQ 69

Query: 198 ERACQAIGLLAVTGRA-RRLLVELGVIPGLVELFHIG-DWTTKLVAGNTLGVVAAHVEYI 255
              C A+  L       +  + EL  +P L+++     D  TK      L  ++++ +  
Sbjct: 70  RAVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLK 129

Query: 256 TPVAEAGAIPLYAELLQGPDSTGKEISEDVFCILAVSEANANAIAEHLVRILREGDNEAN 315
             +     + L  E +  P S   E           +      I  ++   LR      N
Sbjct: 130 NLMITEALLTL-TENIIIPFSGWPEGDYP-----KANGLLDFDIFYNVTGCLR------N 177

Query: 316 AAAADVLWDLAGYKHSVPVIRNSGAIPILVNLLRGE------NDEVREKVSGAIAQLSY 368
            ++A              + R  G I  LV+ +RG       +D+  E     +  LSY
Sbjct: 178 MSSAGA-------DGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSY 229

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 60.6 bits (146), Expect = 6e-10
 Identities = 78/537 (14%), Positives = 155/537 (28%), Gaps = 175/537 (32%)

Query: 9   EEAFNRFEQAVVSGSEALQVKAL-TKLARVSKFAPQDILAATIPILARLLGENN-FS-GN 65
           EE   +F    V     +  K L + +    +  P  +    I    RL  +N  F+  N
Sbjct: 76  EEMVQKF----VEEVLRINYKFLMSPIKTEQR-QPSMMTRMYIEQRDRLYNDNQVFAKYN 130

Query: 66  LTR-----SIQQAAAYCLKQIASQA----DGALATEIGQSGVINSVLRLFPQSDDSFRTV 116
           ++R      ++QA    L ++        DG L    G++ V   V         S++  
Sbjct: 131 VSRLQPYLKLRQA----LLELRPAKNVLIDGVLG--SGKTWVALDVCL-------SYKVQ 177

Query: 117 LVKCLRVF-VTFGNENRVIVARNGGLEIVIDL-------LNSCNDGTRRYLLEI------ 162
                ++F +   N N         LE++  L         S +D +    L I      
Sbjct: 178 CKMDFKIFWLNLKNCNSP----ETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAE 233

Query: 163 LSALALLREVRRVLICLGGLRY--LVEAVSFGS---MVSRERAC---------------- 201
           L  L   +     L+ L  ++      A +      + +R +                  
Sbjct: 234 LRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDH 293

Query: 202 --------QAIGLLA--VTGRARRLLVE-LGVIPGLVELF------HIGDWTT-KLVAGN 243
                   +   LL   +  R + L  E L   P  + +        +  W   K V  +
Sbjct: 294 HSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCD 353

Query: 244 TLG-VVAAHVEYITPVAEAGAIPLYAELLQGPDSTGKEISEDVFCIL--AVSEANANAIA 300
            L  ++ + +  + P AE     ++  L   P S    I   +  ++   V +++   + 
Sbjct: 354 KLTTIIESSLNVLEP-AEYRK--MFDRLSVFPPSA--HIPTILLSLIWFDVIKSDVMVVV 408

Query: 301 EHLVR---------------------ILREGDNEA----------NAAAADVLWDLA--- 326
             L +                     +  + +NE           N        DL    
Sbjct: 409 NKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPY 468

Query: 327 ---------GYKHSVPVIRNSGAIPILVNLLRGENDEVREKVSGAIAQLSYN------EA 371
                    G+ H             L N+   E   +   V      L +         
Sbjct: 469 LDQYFYSHIGH-H-------------LKNIEHPERMTLFRMVF-----LDFRFLEQKIRH 509

Query: 372 DRVALADAGAVPIMIELLHD---------ESEELRDNAAESLINFSEDPLQHERISE 419
           D  A   +G++   +  L           +++   +    ++++F     ++   S+
Sbjct: 510 DSTAWNASGSI---LNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSK 563

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.8 bits (105), Expect = 5e-05
 Identities = 69/472 (14%), Positives = 130/472 (27%), Gaps = 146/472 (30%)

Query: 14  RFEQAVV------SGSEALQVKALTKLARVSKFA-------------PQDILAATIPILA 54
           R  + V+      SG   + +          K               P+ +L     +L 
Sbjct: 148 RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLE----MLQ 203

Query: 55  RLLGENNFSGNLTRSIQQAAAYCLKQIASQADGALATEIGQSGVINSVLRLFPQSDD--- 111
           +LL       N T     ++    K         L   +      N +L L     +   
Sbjct: 204 KLL--YQIDPNWTSRSDHSSNI--KLRIHSIQAELRRLLKSKPYENCLLVL----LNVQN 255

Query: 112 --SFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLNSCNDG-TRRYLLEILS---- 164
             ++    + C ++ +T   +  V    +      I L +  +   T   +  +L     
Sbjct: 256 AKAWNAFNLSC-KILLTTRFKQ-VTDFLSAATTTHISL-DHHSMTLTPDEVKSLLLKYLD 312

Query: 165 --ALALLREVRRV---LICLGG--LRYLVEAVSFGSMVSRERACQAIGL-LAV--TGRAR 214
                L REV       + +    +R  +        V+ ++    I   L V      R
Sbjct: 313 CRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYR 372

Query: 215 RLLVELGV------IP-GLVELFHIGDWTTK----------------LVAGN----TLGV 247
           ++   L V      IP  L+ L     W                   LV       T+ +
Sbjct: 373 KMFDRLSVFPPSAHIPTILLSLI----WFDVIKSDVMVVVNKLHKYSLVEKQPKESTISI 428

Query: 248 VAAHVEYITPVAEAGAIPLYAELLQG--------PDSTGKEISEDVFCILAVSEANANAI 299
            + ++E    +    A  L+  ++           D       +  F          + I
Sbjct: 429 PSIYLELKVKLENEYA--LHRSIVDHYNIPKTFDSDDLIPPYLDQYFY---------SHI 477

Query: 300 AEHLVRI----------------------LREGDNEANAAA--ADVLWDLAGYK-HSVPV 334
             HL  I                      +R      NA+    + L  L  YK +   +
Sbjct: 478 GHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPY---I 534

Query: 335 IRNSGAIPILVN-----LLRGENDEVREKVSGAIAQLS--------YNEADR 373
             N      LVN     L + E + +  K +  + +++        + EA +
Sbjct: 535 CDNDPKYERLVNAILDFLPKIEENLICSKYT-DLLRIALMAEDEAIFEEAHK 585

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588

 Score = 58.9 bits (142), Expect = 2e-09
 Identities = 64/427 (14%), Positives = 143/427 (33%), Gaps = 34/427 (7%)

Query: 21  SGSEALQVKALTKLARVSK-FAPQDILAATIPILARLLGENNFSGNLTRSIQQAAAYCLK 79
           +    L++ ++ KL+ ++     +   +  +P L   + +          +  A A  L 
Sbjct: 21  NEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDE-------DEVLLALAEQLG 73

Query: 80  QIASQADGALATEIGQSGVINSVLRLFPQSDDSFRTVLVKCLRVFVTFGNENRVIVARNG 139
              +   G          ++  +  L    +   R   V+ LR      + + +      
Sbjct: 74  TFTTLVGGPEYVHC----LLPPLESLATVEETVVRDKAVESLRAISHEHSPSDL---EAH 126

Query: 140 GLEIVIDLLNSCNDGTRRYLLEILSALA--LLREVRRVLICLGGLRYLVEAVSFGSMVSR 197
            + +V  L       +R     + S     +   V+  L      +Y     S  + + R
Sbjct: 127 FVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAEL-----RQYFRNLCSDDTPMVR 181

Query: 198 ERACQAIGLLAVTGRARRLLVELGVIPGLVELFHIGDWTTKLVAGNTLGVVAAHVEYITP 257
             A   +G  A       +  E+  IP    L      + +L+A      +A  +     
Sbjct: 182 RAAASKLGEFAKVLELDNVKSEI--IPMFSNLASDEQDSVRLLAVEACVNIAQLLP--QE 237

Query: 258 VAEAGAIPLYAELLQGPDSTGKEISEDVFCILAVS---EANANAIAEHLVRILREGDNEA 314
             EA  +P   +  +      + +  D F  L  +   E     +      ++++ + E 
Sbjct: 238 DLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEV 297

Query: 315 NAAAADVLWDLA--GYKHSVPVIRNSGAIPILVNLLRGENDEVREKVSGAIAQLSYNEAD 372
            AAA+  + +            +  S  +P +  L+   N  V+  ++  I  LS     
Sbjct: 298 RAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGK 357

Query: 373 RVALADAGAVPIMIELLHDESEELRDNAAESLINFSEDPLQHERISEAIGIPSFQSMQSR 432
              +     +P+ +  L DE  E+R N   +L   +E  +   ++S+++     +  +  
Sbjct: 358 DNTIEHL--LPLFLAQLKDECPEVRLNIISNLDCVNE-VIGIRQLSQSLLPAIVELAEDA 414

Query: 433 LTRIRAS 439
             R+R +
Sbjct: 415 KWRVRLA 421

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588

 Score = 58.5 bits (141), Expect = 2e-09
 Identities = 61/293 (20%), Positives = 110/293 (37%), Gaps = 19/293 (6%)

Query: 141 LEIVIDLLNSCNDGTRRYLLEILSALALLREVRRVLICLGGLRYLVEAVSFGSMVSRERA 200
           + ++ID L + +   R   ++ LS +AL   V R    L  L +L + +     V    A
Sbjct: 12  IAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSEL--LPFLTDTIYDEDEVLLALA 69

Query: 201 CQAIGLLAVTGRARRLLVELGVIPGLVELFHIGDWTTKLVAGNTLGVVAAHVEYITPVAE 260
            Q      + G    +     ++P L  L  + +   +  A  +L  ++          E
Sbjct: 70  EQLGTFTTLVGGPEYVHC---LLPPLESLATVEETVVRDKAVESLRAISHEHS--PSDLE 124

Query: 261 AGAIPLYAELLQGPDSTGKEISEDVFCILA--VSEANANAIAEHLVRILREGDNEANAAA 318
           A  +PL   L  G   T +  +  +F +    VS A    + ++   +  +       AA
Sbjct: 125 AHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAA 184

Query: 319 ADVLWDLAGYKHSVPVIRNSGAIPILVNLLRGENDEVREKVSGAIAQLS--YNEADRVAL 376
           A  L + A  K        S  IP+  NL   E D VR     A   ++    + D  AL
Sbjct: 185 ASKLGEFA--KVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEAL 242

Query: 377 ADAGAVPIMIELLHDESEELRDNAAESLINFSEDPLQHERISEAIGIPSFQSM 429
                +P + +   D+S  +R   A+      +  +  E     + +P+FQ++
Sbjct: 243 ----VMPTLRQAAEDKSWRVRYMVADKFTELQK-AVGPEITKTDL-VPAFQNL 289

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588

 Score = 56.9 bits (137), Expect = 7e-09
 Identities = 61/408 (14%), Positives = 124/408 (30%), Gaps = 29/408 (7%)

Query: 4   PDTNWEEAFNRFEQAVVSGSEALQVKALTKLARVSKFAPQDILAATI-PILARLLGENNF 62
                 E    F       +  ++  A +KL   +K    D + + I P+ + L  +   
Sbjct: 158 SSAVKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQD 217

Query: 63  SGNLTRSIQQAAAYCLKQIASQADGALATEIGQSGVINSVLRLFPQSDDSFRTVLVKCL- 121
           S      ++  A      IA          +    V+ ++ +         R ++     
Sbjct: 218 S------VRLLAVEACVNIAQLLPQEDLEAL----VMPTLRQAAEDKSWRVRYMVADKFT 267

Query: 122 RVFVTFGNENRVIVARNGGLEIVIDLLNSCNDGTRRYLLEILSALA--LLREVRRVLICL 179
            +    G E    + +   +    +L+  C    R      +      L  + R  +I  
Sbjct: 268 ELQKAVGPE----ITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMS 323

Query: 180 GGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRARRLLVELGVIPGLVELFHIGDWTTKL 239
             L  + E VS  +   +      I  L+        +  L  +P  +          +L
Sbjct: 324 QILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHL--LPLFLAQLKDECPEVRL 381

Query: 240 VAGNTLGVVAAHVEYITPVAEAGAIPLYAELLQGPDSTGKEISEDVFCILAV---SEANA 296
              + L  V   +  I  ++++  +P   EL +      +    +   +LA     E   
Sbjct: 382 NIISNLDCVNEVIG-IRQLSQS-LLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFD 439

Query: 297 NAIAEHLVRILREGDNEANAAAADVLWDLAGYKHSVPVIRNSGAIPILVNLLRGENDEVR 356
             +    +  L +       AA   L  L   +       ++  IP ++ +    N   R
Sbjct: 440 EKLNSLCMAWLVDHVYAIREAATSNLKKLV--EKFGKEWAHATIIPKVLAMSGDPNYLHR 497

Query: 357 EKVSGAIAQLSYNEADRVALADAGAVPIMIELLHDESEELRDNAAESL 404
                 I  LS      +       +P ++ +  D    +R N A+SL
Sbjct: 498 MTTLFCINVLSEVCGQDITTKHM--LPTVLRMAGDPVANVRFNVAKSL 543

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588

 Score = 50.0 bits (119), Expect = 1e-06
 Identities = 53/384 (13%), Positives = 129/384 (33%), Gaps = 28/384 (7%)

Query: 26  LQVKALTKLARVSKFAPQDILAATIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQA 85
           L V+A   +A       +D+ A  +P L +   + ++       ++   A    ++    
Sbjct: 222 LAVEACVNIA--QLLPQEDLEALVMPTLRQAAEDKSWR------VRYMVADKFTELQK-- 271

Query: 86  DGALATEIGQSGVINSVLRLFPQSDDSFRTVLVKCLRVFV-TFGNENRVIVARNGGLEIV 144
             A+  EI ++ ++ +   L    +   R      ++ F      + R  V  +  L  +
Sbjct: 272 --AVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCI 329

Query: 145 IDLLNSCNDGTRRYLLEILSALALLREVRRVLICLGGLRYLVEAVSFGSMVSRERACQAI 204
            +L++  N   +  L  ++  L+ +      +  L  L   +  +       R      +
Sbjct: 330 KELVSDANQHVKSALASVIMGLSPILGKDNTIEHL--LPLFLAQLKDECPEVRLNIISNL 387

Query: 205 GLLAVTGRARRLLVELGVIPGLVELFHIGDWTTKLVAGNTLGVVAAHVEYITPVAEAGAI 264
             +      R+L   L  +P +VEL     W  +L     + ++A          +    
Sbjct: 388 DCVNEVIGIRQLSQSL--LPAIVELAEDAKWRVRLAIIEYMPLLAGQ--LGVEFFDEKLN 443

Query: 265 PLYAELLQGPDSTGKEISEDVFCILAVSEANANAIAEHLVRILREGDNEANA----AAAD 320
            L    L       +E +      L V +         ++  +     + N         
Sbjct: 444 SLCMAWLVDHVYAIREAATSNLKKL-VEKFGKEWAHATIIPKVLAMSGDPNYLHRMTTLF 502

Query: 321 VLWDLAGYKHSVPVIRNSGAIPILVNLLRGENDEVREKVSGAIAQLSYNEADRVALADAG 380
            +  L+         ++   +P ++ +       VR  V+ ++ ++     +    ++  
Sbjct: 503 CINVLSEVCGQDITTKH--MLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQSEV- 559

Query: 381 AVPIMIELLHDESEELRDNAAESL 404
             PI+ +L  D+  +++  A E+L
Sbjct: 560 -KPILEKLTQDQDVDVKYFAQEAL 582

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211

 Score = 52.0 bits (125), Expect = 6e-08
 Identities = 34/146 (23%), Positives = 58/146 (39%), Gaps = 25/146 (17%)

Query: 259 AEAGAIPLYAELLQGPDSTGKEISEDVFCILAVSEANANAIAEHLVRILREGDNEANAAA 318
           A+   + +Y + LQ      +  +      +    A      E L++ L++ D     AA
Sbjct: 16  ADPEKVEMYIKNLQDDSYYVRRAAAYALGKIGDERA-----VEPLIKALKDEDAWVRRAA 70

Query: 319 ADVLWDLAGYKHSVPVIRNSGAIPILVNLLRGENDEVREKVSGAIAQLSYNEADRVALAD 378
           AD L            I +  A+  L+  L+ E+  VR+  + A+ Q+           D
Sbjct: 71  ADALGQ----------IGDERAVEPLIKALKDEDGWVRQSAAVALGQI----------GD 110

Query: 379 AGAVPIMIELLHDESEELRDNAAESL 404
             AV  +I+ L DE   +R  AA +L
Sbjct: 111 ERAVEPLIKALKDEDWFVRIAAAFAL 136

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211

 Score = 46.2 bits (110), Expect = 5e-06
 Identities = 27/116 (23%), Positives = 46/116 (39%), Gaps = 21/116 (18%)

Query: 289 LAVSEANANAIAEHLVRILREGDNEANAAAADVLWDLAGYKHSVPVIRNSGAIPILVNLL 348
            A   A+   + E  ++ L++       AAA  L            I +  A+  L+  L
Sbjct: 11  AAPLRADPEKV-EMYIKNLQDDSYYVRRAAAYALGK----------IGDERAVEPLIKAL 59

Query: 349 RGENDEVREKVSGAIAQLSYNEADRVALADAGAVPIMIELLHDESEELRDNAAESL 404
           + E+  VR   + A+            + D  AV  +I+ L DE   +R +AA +L
Sbjct: 60  KDEDAWVRRAAADALG----------QIGDERAVEPLIKALKDEDGWVRQSAAVAL 105

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Length = 778

 Score = 52.1 bits (124), Expect = 2e-07
 Identities = 34/283 (12%), Positives = 97/283 (34%), Gaps = 31/283 (10%)

Query: 129 NENRVIVARNGGLEIVIDLLNSCNDGTRRYLLEILSALALLREVRRVLICLGGLRYLVEA 188
             N   + R   +  +   +++ +   ++ ++ I+  +   +     L   G ++ ++E 
Sbjct: 447 LFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRSKNFIPQLAQQGAVKIILEY 506

Query: 189 VSFGSMVS---RERACQAIGLLAVT---GRARRLLVELGVIPGLVELFHIGDWTTKLVAG 242
           ++    +    R   C+A+  + +    G   +    L  IP L EL             
Sbjct: 507 LANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRST-------- 558

Query: 243 NTLGVVAAHVEYITPVAEAGAIPLYAELLQGPDSTGKEISEDVFCILAVSEANANAIAEH 302
                   + E I       A+     L     S G+E+ + +         +       
Sbjct: 559 PVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHI--------VSTKVYWST 610

Query: 303 LVRILREGDNEANAAAADVLWDLAGYKHSVPVI-------RNSGAIPILVNLLRGENDEV 355
           +  ++ + +     +  +++ ++  +  ++          ++     ILV LL+  + E 
Sbjct: 611 IENLMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVES 670

Query: 356 REKVSGAIAQL--SYNEADRVALADAGAVPIMIELLHDESEEL 396
           +  V+   A +  +     +  L     +   I++  D+ +++
Sbjct: 671 QRAVAAIFANIATTIPLIAKELLTKKELIENAIQVFADQIDDI 713

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Length = 778

 Score = 44.0 bits (103), Expect = 9e-05
 Identities = 53/402 (13%), Positives = 114/402 (28%), Gaps = 58/402 (14%)

Query: 67  TRSIQQAAAYCLKQIASQADGALATEIGQSGVINSVLRLFPQSDDSFRTVLVKCLRVFVT 126
              +Q  +A  L +  S         I    +    +    +       + V+ L  +++
Sbjct: 307 VEDVQIYSALVLVKTWSFTKLT---CINLKQLSEIFINAISRRIVPKVEMSVEAL-AYLS 362

Query: 127 FGNENRVIVARNGG-LEIVIDLLNSCNDGTRRY-LLEILSALALLREVRRVLICLGGLRY 184
                ++++  N    EI++ ++ S       Y LL I++ L+ L E             
Sbjct: 363 LKASVKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPE--EXXXXXXXXXX 420

Query: 185 LVEAVSFGSMVSRERACQAIGLLAVTGRARRLLVELGVIPGLVELFHIGDWTTKLVAGNT 244
                      + +   +      +     + ++   +I  L    H      K      
Sbjct: 421 XXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKREMHNLSPNCKQQVVRI 480

Query: 245 LGVVAAHVEYITPVAEAGAIPLYAELLQGPDSTGKEISEDVFCILAVSEANANAIAEHLV 304
           +  +     +I  +A+ GA+ +  E L      G+ I   +    A            L 
Sbjct: 481 IYNITRSKNFIPQLAQQGAVKIILEYLANKQDIGEPI--RILGCRA------------LT 526

Query: 305 RILREGDNEANAAAADVLWDLAGYKHSVPVIRNSGAIPILVNLLRGENDEVREKVSGA-- 362
           R+L   +                            AIP L  LL          +     
Sbjct: 527 RMLIFTNPG----------------LIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQ 570

Query: 363 ---------------IAQLSYNEADRVA---LADAGAVPIMIELLHDESEELRDNAAESL 404
                          +A    ++ + V    ++       +  L+ DE+  L+ +  E +
Sbjct: 571 IKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELI 630

Query: 405 INFSEDPLQHERISEAIGIPSFQSMQSRLTRIRASDDLMARS 446
            N    PL        +  P      + L ++    D+ ++ 
Sbjct: 631 SNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQR 672

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201

 Score = 50.0 bits (120), Expect = 3e-07
 Identities = 33/142 (23%), Positives = 56/142 (39%), Gaps = 25/142 (17%)

Query: 263 AIPLYAELLQGPDSTGKEISEDVFCILAVSEANANAIAEHLVRILREGDNEANAAAADVL 322
            + +Y + LQ      +          A+ +       E L++ L++ D     AAAD L
Sbjct: 15  KVEMYIKNLQDDSYYVRR-----AAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADAL 69

Query: 323 WDLAGYKHSVPVIRNSGAIPILVNLLRGENDEVREKVSGAIAQLSYNEADRVALADAGAV 382
                       I +  A+  L+  L+ E+  VR+  + A+ Q+           D  AV
Sbjct: 70  GQ----------IGDERAVEPLIKALKDEDGWVRQSAAVALGQI----------GDERAV 109

Query: 383 PIMIELLHDESEELRDNAAESL 404
             +I+ L DE   +R  AA +L
Sbjct: 110 EPLIKALKDEDWFVRIAAAFAL 131

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201

 Score = 45.8 bits (109), Expect = 7e-06
 Identities = 34/196 (17%), Positives = 68/196 (34%), Gaps = 38/196 (19%)

Query: 212 RARRLLVELG---VIPGLVELFHIGDWTTKLVAGNTLGVVAAHVEYITPVAEAGAIPLYA 268
           R             +   ++      +  +  A   LG +           +  A+    
Sbjct: 2   RGSHHHHHHTDPEKVEMYIKNLQDDSYYVRRAAAYALGKIG----------DERAVEPLI 51

Query: 269 ELLQGPDSTGKEISEDVFCILAVSEANANAIAEHLVRILREGDNEANAAAADVLWDLAGY 328
           + L+  D+  +          A+ +       E L++ L++ D     +AA  L      
Sbjct: 52  KALKDEDAWVRR-----AAADALGQIGDERAVEPLIKALKDEDGWVRQSAAVALGQ---- 102

Query: 329 KHSVPVIRNSGAIPILVNLLRGENDEVREKVSGAIAQLSYNEADRVALADAGAVPIMIEL 388
                 I +  A+  L+  L+ E+  VR   + A+ ++           D  AV  +I+ 
Sbjct: 103 ------IGDERAVEPLIKALKDEDWFVRIAAAFALGEI----------GDERAVEPLIKA 146

Query: 389 LHDESEELRDNAAESL 404
           L DE   +R +AA++L
Sbjct: 147 LKDEDGWVRQSAADAL 162

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131

 Score = 48.1 bits (115), Expect = 3e-07
 Identities = 19/105 (18%), Positives = 35/105 (33%), Gaps = 20/105 (19%)

Query: 300 AEHLVRILREGDNEANAAAADVLWDLAGYKHSVPVIRNSGAIPILVNLLRGENDEVREKV 359
            E L+  L   D     AAA ++ +           ++  A+  L+ LL  ++  VR   
Sbjct: 44  FEPLLESLSNEDWRIRGAAAWIIGN----------FQDERAVEPLIKLLEDDSGFVRSGA 93

Query: 360 SGAIAQLSYNEADRVALADAGAVPIMIELLHDESEELRDNAAESL 404
           + ++ Q+                  M +L    +   R  A   L
Sbjct: 94  ARSLEQI----------GGERVRAAMEKLAETGTGFARKVAVNYL 128

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131

 Score = 45.0 bits (107), Expect = 4e-06
 Identities = 20/104 (19%), Positives = 33/104 (31%), Gaps = 21/104 (20%)

Query: 301 EHLVRILREGDNEANAAAADVLWDLAGYKHSVPVIRNSGAIPILVNLLRGENDEVREKVS 360
                 + + +       +  L  +              A   L+  L  E+  +R   +
Sbjct: 15  VPRGSHMADENKWVRRDVSTALSRM-----------GDEAFEPLLESLSNEDWRIRGAAA 63

Query: 361 GAIAQLSYNEADRVALADAGAVPIMIELLHDESEELRDNAAESL 404
             I              D  AV  +I+LL D+S  +R  AA SL
Sbjct: 64  WIIGNF----------QDERAVEPLIKLLEDDSGFVRSGAARSL 97

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131

 Score = 39.2 bits (92), Expect = 4e-04
 Identities = 15/70 (21%), Positives = 28/70 (40%), Gaps = 11/70 (15%)

Query: 335 IRNSGAIPILVNLLRGENDEVREKVSGAIAQLSYNEADRVALADAGAVPIMIELLHDESE 394
             +S  +    + +  EN  VR  VS A++++              A   ++E L +E  
Sbjct: 8   HHHSSGLVPRGSHMADENKWVRRDVSTALSRM-----------GDEAFEPLLESLSNEDW 56

Query: 395 ELRDNAAESL 404
            +R  AA  +
Sbjct: 57  RIRGAAAWII 66

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280

 Score = 50.2 bits (120), Expect = 5e-07
 Identities = 28/209 (13%), Positives = 66/209 (31%), Gaps = 33/209 (15%)

Query: 197 RERACQAIGLLAVTGRARRLLVELGVIPGLVELFHIGDWTTKLVAGNTLGVVAAHVEYIT 256
           + +A +  GL     +             L  L    +   ++ +   L           
Sbjct: 7   KRKASKEYGLYNQCKKL--------NDDELFRLLDDHNSLKRISSARVLQ---------- 48

Query: 257 PVAEAGAIPLYAELLQGPDSTGKEISEDVFCILAVSEANANAIAEHLVRI-LREGDNEAN 315
                 A+ L  E     +   ++I   +   + + +   + +   L  + L +      
Sbjct: 49  LRGGQDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCEDNVFNILNNMALNDKSACVR 108

Query: 316 AAAADVLWDLAGYKHSVPVIRNSGAIPILVNLLRGENDEVREKVSGAIAQLSYNEADRVA 375
           A A +        +     I +   +         ++  VR   + AI+ +         
Sbjct: 109 ATAIEST----AQRCKKNPIYSPKIVEQSQITAFDKSTNVRRATAFAISVI--------- 155

Query: 376 LADAGAVPIMIELLHDESEELRDNAAESL 404
             D   +P++I LL D + ++R+ AA ++
Sbjct: 156 -NDKATIPLLINLLKDPNGDVRNWAAFAI 183

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230

 Score = 48.6 bits (114), Expect = 3e-06
 Identities = 58/409 (14%), Positives = 120/409 (29%), Gaps = 28/409 (6%)

Query: 8    WEEAFNRFEQAVVSGSEALQVKALTKLARVSKFAPQDILAATIPILARLLGENNFSGNLT 67
              E        +     AL++  L+ L  + K     + AA I  +   L       ++ 
Sbjct: 648  LGEGVPILASFLRKNQRALKLGTLSALDILIKNYSDSLTAAMIDAVLDELPPLISESDM- 706

Query: 68   RSIQQAAAYCLKQIASQADGALATEIGQSGVINSVLRLF--PQSDDSFRTVLVKCLRVFV 125
              + Q A   L  +A     +L+   G   ++N ++ L   P       + ++   +  V
Sbjct: 707  -HVSQMAISFLTTLAKVYPSSLSKISGS--ILNELIGLVRSPLLQGGALSAMLDFFQALV 763

Query: 126  TFGNENRVIVARNGGLEIVIDLLNSCNDGTRRYLLEILSALALLREVRRVLICLGGLRYL 185
              G  N   +     L   +   +     T +     ++                 +   
Sbjct: 764  VTGTNNLGYMDLLRMLTGPV--YSQSTALTHKQSYYSIAKCVAALTRACPKEGPAVVGQF 821

Query: 186  VEAVSFGSMVSRERACQAIGLLAVTGRARRLLVELGVIPGLVELFHIGDWTTKLVAGNTL 245
            ++ V         R    + L  V G    L  +L +   ++E F       K  A   L
Sbjct: 822  IQDVKNSRSTDSIRLLALLSLGEV-GHHIDLSGQLELKSVILEAFSSPSEEVKSAASYAL 880

Query: 246  GVVAA-HVEYITPVAEAGAIPLYAELLQGPDSTGKEISEDVFCILAVSEANANAIAEHLV 304
            G ++  ++    P        +  E+   P      +      I + S        E++ 
Sbjct: 881  GSISVGNLPEYLPF-------VLQEITSQPKRQYLLLHSLKEIISSASVVGLKPYVENIW 933

Query: 305  RILRE----GDNEANAAAADVLWDLAGYKHSVPVIRNSGAIPILVNLLRGENDEVREKVS 360
             +L +     +       A+ L  L        +I     +P L   L   +   R  V 
Sbjct: 934  ALLLKHCECAEEGTRNVVAECLGKLT-------LIDPETLLPRLKGYLISGSSYARSSVV 986

Query: 361  GAIAQLSYNEADRVALADAGAVPIMIELLHDESEELRDNAAESLINFSE 409
             A+     +    +       +   ++ L D    +R  A  +  + + 
Sbjct: 987  TAVKFTISDHPQPIDPLLKNCIGDFLKTLEDPDLNVRRVALVTFNSAAH 1035

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230

 Score = 45.1 bits (105), Expect = 5e-05
 Identities = 46/364 (12%), Positives = 110/364 (30%), Gaps = 15/364 (4%)

Query: 9   EEAFNRFEQAVVSGSEALQVKALTKLARVSKFAPQDILAATIPILARLLGENNFSGNLTR 68
            +      + +   +  +Q  A+  L  +     +  +   +  L   +  +        
Sbjct: 47  RKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEYQVETIVDTLCTNMLSDK------E 100

Query: 69  SIQQAAAYCLKQIASQADGALATEIGQSGVINSVLR-----LFPQSDDSFRTVLVKCLRV 123
            ++  ++  LK +  +   A +     + V   +       +  Q D S +   +  +  
Sbjct: 101 QLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMAD 160

Query: 124 FVTFGNENRVIVARNGGLEIVIDLLNSCNDGTRRYLLEILSALALLREVRRVLICLGGLR 183
            ++      ++      L  ++  L S     R+  +  L  L +       +  +  L 
Sbjct: 161 MLS-RQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDLIEHL- 218

Query: 184 YLVEAVSFGSMVSRERACQAIGLLAVTGRARRLLVELGVIPGLVELFHIGDWTTKLVAGN 243
            L E     SM +     Q I  ++     R       +IP +V+  ++ D   +     
Sbjct: 219 -LSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQ 277

Query: 244 TLGVVAAHV-EYITPVAEAGAIPLYAELLQGPDSTGKEISEDVFCILAVSEANANAIAEH 302
                     + + P            L   P+    +  ED   + A    + +  ++ 
Sbjct: 278 AFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDD 337

Query: 303 LVRILREGDNEANAAAADVLWDLAGYKHSVPVIRNSGAIPILVNLLRGENDEVREKVSGA 362
                 +   +   AAA  L  +   +H +         P L++  +   + V+  V  A
Sbjct: 338 EYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFKEREENVKADVFHA 397

Query: 363 IAQL 366
              L
Sbjct: 398 YLSL 401

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230

 Score = 42.4 bits (98), Expect = 4e-04
 Identities = 53/399 (13%), Positives = 119/399 (29%), Gaps = 32/399 (8%)

Query: 9   EEAFNRFEQAVVSGSEALQVKALTKLARVSKFAPQDILAATIPILARLLGENNFSGNLTR 68
                     + S   A++ + +  L  +       +    I  L   L +N+     + 
Sbjct: 174 PSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSKND-----SM 228

Query: 69  SIQQAAAYCLKQIASQADGALATEIGQSGVINSVLRLFPQSDDSFRTVLVKCLRVFVTFG 128
           S  +    C+  I+ QA   +   + +  +I  V++     DD  R   ++    FV   
Sbjct: 229 STTRTYIQCIAAISRQAGHRIGEYLEK--IIPLVVKFCNVDDDELREYCIQAFESFVRRC 286

Query: 129 NENRVIVARNGGLEIVIDLLNSCNDGTRRYLLEILSALALLREVRRVLICLGGLRYLVEA 188
            +  V    +  + I +  L    +       E  +A+                    + 
Sbjct: 287 PKE-VYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDM 345

Query: 189 VSFGSMVSRERACQAIGLLAVTGRARRLLVELGVIPGLVELFHIGDWTTKLVAGNTLGVV 248
               S   R  A + +  +  T           V P L+  F   +   K    +    +
Sbjct: 346 ----SWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFKEREENVKADVFHAYLSL 401

Query: 249 AAHVEYITPVAEAGAIPLYAELLQGPDSTGKEISEDVFCILAVSEANANAIAEHLVRILR 308
              ++   PV      P   E  + P              L + ++    I + L + ++
Sbjct: 402 ---LKQTRPVQSWLCDPDAMEQGETP--------------LTMLQSQVPNIVKALHKQMK 444

Query: 309 EGDNEANAAAADVLWDLAGYKHSVPVIRNSGAIPILVNLLRGEND--EVREKVSGAIAQL 366
           E   +      ++L +L               +P ++  L  ++    ++      +  +
Sbjct: 445 EKSVKTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVI 504

Query: 367 SYNEADRVALADAGA-VPIMIELLHDESEELRDNAAESL 404
             N + +V      A VP ++  + D   ++   A    
Sbjct: 505 LCNHSPQVFHPHVQALVPPVVACVGDPFYKITSEALLVT 543

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253

 Score = 45.8 bits (108), Expect = 1e-05
 Identities = 37/190 (19%), Positives = 73/190 (38%), Gaps = 14/190 (7%)

Query: 222 VIPGLVELFHIGDWTTKLVAGNTLGVVAAHV-EYITPVAEAGAIPLYAELLQGPDSTGKE 280
           V+  L+EL     WT    A + + V+A    +   P+ +     L++ L +       +
Sbjct: 33  VLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPMLKK----LFSLLKKSEAIPLTQ 88

Query: 281 ISEDVFCILAVSEANA-NAIAEHLVRILREGDNEANAAAADVLWDLAGYKHSVPVIRNSG 339
                F  +A  +     ++   L    R GD +     +  L ++A     +       
Sbjct: 89  EIAKAFGQMAKEKPELVKSMIPVLFANYRIGDEKTKINVSYALEEIAKANPMLMAS---- 144

Query: 340 AIPILVNLLRGENDEVREKVSGAIAQLSYNEADRVALADAGAVPIMIELLHDESEELRDN 399
            +   +++L  +N E +      I  +  N    V       +P +I LLHD  E +R +
Sbjct: 145 IVRDFMSMLSSKNREDKLTALNFIEAMGENSFKYVN----PFLPRIINLLHDGDEIVRAS 200

Query: 400 AAESLINFSE 409
           A E+L++ + 
Sbjct: 201 AVEALVHLAT 210

>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi} Length = 800

 Score = 42.9 bits (100), Expect = 2e-04
 Identities = 33/206 (16%), Positives = 73/206 (35%), Gaps = 21/206 (10%)

Query: 197 RERACQAIGLLAVTGRARRLLVELGVIPGLVELFHIGDWTTKLVAGNTLGVVAAHVEYIT 256
           R+ A   +  +        L+    +I  LV     GDW  +      LG +   VE   
Sbjct: 245 RDAAAYLLSRIY------PLIGPNDIIEQLVGFLDSGDWQVQFSGLIALGYLKEFVEDKD 298

Query: 257 PVAEAGAIPLYAELLQGPDSTGKEISEDVFCILAVSEANANAIAEHLVRILREGDNEANA 316
            +           LL  PD   K +S ++ C   ++++  + + E   + +   +  + +
Sbjct: 299 GL-----CRKLVSLLSSPDEDIKLLSAELLCHFPITDSL-DLVLEKCWKNIESEELISVS 352

Query: 317 AAADVLWDLAGYKHSVPVIRNSGAIPILVNLLRGENDEVREKVSGAIAQLSYNEADRVAL 376
             +++      Y+ +  +      +  +         EVR  +   +  LS    D +  
Sbjct: 353 KTSNLSLLTKIYRENPELSIPPERLKDIFPCFTSPVPEVRTSILNMVKNLSEESIDFL-- 410

Query: 377 ADAGAVPIMIELLHDESEELRDNAAE 402
                  +   +L +E +E+R+ A +
Sbjct: 411 -------VAEVVLIEEKDEIREMAIK 429

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A Length = 651

 Score = 42.8 bits (100), Expect = 2e-04
 Identities = 28/246 (11%), Positives = 83/246 (33%), Gaps = 31/246 (12%)

Query: 132 RVIVARNGGLEIVIDLLNSCNDGTRRYLLEILSALALLREVR---RVLICLGGLRYLVEA 188
            + + +   + +++ LL   +   R   +++L++L      +    +L+   G+  L++ 
Sbjct: 115 EIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDL 174

Query: 189 VSFGSMVSRERACQAIGLLAVTGRA-RRLLVELGVIPGLVELFHI-GDWTTKLVAGNTLG 246
           ++    V R      +  L  +  A ++++        L+++    G+    +V  + L 
Sbjct: 175 LADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLI 234

Query: 247 VVAAHVEYITP----VAEAGAIPLYAELLQGPDSTGKEISEDVFCILAVSEANANAIAEH 302
           ++   ++          E   I       +  D      ++ V  +  + +         
Sbjct: 235 LLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQ--------- 285

Query: 303 LVRILREGDNEANAAAADVLWDLAGYKHSVPVIRNSGAIPILVNLLRGEN--DEVREKVS 360
           LVR+L   +N                      +   G +  L  +L       ++  +  
Sbjct: 286 LVRVLVSPNNPP-----------GATSSCQKAMFQCGLLQQLCTILMATGVPADILTETI 334

Query: 361 GAIAQL 366
             ++++
Sbjct: 335 NTVSEV 340

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852

 Score = 41.7 bits (97), Expect = 4e-04
 Identities = 56/431 (12%), Positives = 120/431 (27%), Gaps = 57/431 (13%)

Query: 17  QAVVSGSEALQVKALTKLARVSKFAPQDILAATIPILARLLGENNFSGNLTRSIQQAAAY 76
           +   S    +Q     KL +++++   D     I +L +L  E+          +  +  
Sbjct: 20  KESQSPDTTIQRTVQQKLEQLNQY--PDFNNYLIFVLTKLKSEDE-------PTRSLSGL 70

Query: 77  CLKQIASQADGALATEIGQSGVINSVLRLFPQSDDSFRTVLVKCLRVFVTFGNENRVIVA 136
            LK             +    + +  L     S    R  +   +    + G        
Sbjct: 71  ILKNNVKAHFQNFPNGV-TDFIKSECLNNIGDSSPLIRATVGILITTIASKGELQN---- 125

Query: 137 RNGGLEIVIDLLNSCNDGTRRYLLEILSALA-----LLREVRRVLICLGGLRYLVEAVSF 191
               L  +  LL+S +  T       L  +      +L            +   ++    
Sbjct: 126 WPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKH 185

Query: 192 GSMVSRERACQAIGLLAVTGRARRLLVELGVIPGLVELFHIGDWTTKLVAGNTLG-VVAA 250
            S   R  A   +    ++     +L     I  L  L    +   +      L  ++  
Sbjct: 186 SSPKIRSHAVACVNQFIISRTQALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEV 245

Query: 251 HVEYITPVAEAGAIPLYAELLQGPDSTGKEISEDVFCILAVSEANANAIAEHLVRILR-- 308
            ++ + P      +    +  Q  D      + + +  LA      + +  HL +++   
Sbjct: 246 RMDRLLPHMHN-IVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVL 304

Query: 309 ---------------------------EGDNEANAAAADVLWDLAGYKHS--VPVIRNSG 339
                                        D      +A  L  LA       +P I    
Sbjct: 305 VNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRDELLPHI---- 360

Query: 340 AIPILVNLLRGENDEVREKVSGAIAQLSYNEADRVALADAGAVPIMIELLHDESEELRDN 399
            +P+L  LL      V+E     +  ++      +       +P +I+ L D+   +R  
Sbjct: 361 -LPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSI 419

Query: 400 AAESLINFSED 410
              +L  ++  
Sbjct: 420 TCWTLSRYAHW 430

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852

 Score = 41.7 bits (97), Expect = 5e-04
 Identities = 59/392 (15%), Positives = 123/392 (31%), Gaps = 45/392 (11%)

Query: 30  ALTKLARVSKFAPQDILAATIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQADGAL 89
           +   L  ++     ++L   +P+L  LL  + +       ++++    L  IA      +
Sbjct: 341 SAAALDVLANVYRDELLPHILPLLKELLFHHEWV------VKESGILVLGAIAEGCMQGM 394

Query: 90  ATEIGQSGVINSVLRLFPQSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLN 149
              + +  +I  +++      D    V          + +             ++ +LL 
Sbjct: 395 IPYLPE--LIPHLIQCL---SDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLK 449

Query: 150 SCNDGTRRYLLEILSALALLREVRRVLI---CLGGLRYLVEAVSFGSMVSRERACQAIGL 206
              D  +R      SA A L E     +       L  LV A S     +      AIG 
Sbjct: 450 RILDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGT 509

Query: 207 LA--VTGRARRLLVELGVIPGLVELFHI--GDWTTKLVAGNTLGVVAAHV-----EYITP 257
           LA  V     +      ++P L++ +++   +          L  VA  +      Y  P
Sbjct: 510 LADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFLPYCEP 569

Query: 258 VAEAGAIPLYAELLQGPDSTGKEISEDVFCILAVSEANANAIAEHLVRILREGDNEANAA 317
           V +     +   L Q   +  +    +      +  A                       
Sbjct: 570 VYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVA---------------------LD 608

Query: 318 AADVLWDLAGYKHSVPVIRNSGAIPILVNLLRGENDEVREKVSGAIAQLSYNEADRVALA 377
               L +  G  +   ++  S  + ++   ++ +  EVR+     +  L+      V   
Sbjct: 609 LLSGLAEGLG-GNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPC 667

Query: 378 DAGAVPIMIELLHDESEELRDNAAESLINFSE 409
            A  +PI+   L+ E   + +NA  ++   S 
Sbjct: 668 IADFMPILGTNLNPEFISVCNNATWAIGEISI 699

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	461
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	100.0
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	100.0
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	100.0
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	100.0
3ul1_B	510	Importin subunit alpha-2; arm repeat, armadillo re	100.0
3ul1_B	510	Importin subunit alpha-2; arm repeat, armadillo re	100.0
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	100.0
3tpo_A	529	Importin subunit alpha-2; nuclear import, protein	100.0
3tpo_A	529	Importin subunit alpha-2; nuclear import, protein	100.0
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	100.0
4b8j_A	528	Importin subunit alpha-1A; transport protein, nucl	100.0
4b8j_A	528	Importin subunit alpha-1A; transport protein, nucl	100.0
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	100.0
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	100.0
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	100.0
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	100.0
3nmz_A	458	APC variant protein; protein-protein complex, arma	100.0
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	100.0
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	100.0
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	100.0
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	100.0
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	100.0
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	100.0
3nmz_A	458	APC variant protein; protein-protein complex, arma	100.0
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	99.98
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	99.97
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	99.96
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	99.96
4hxt_A	252	De novo protein OR329; structural genomics, PSI-bi	99.95
4hxt_A	252	De novo protein OR329; structural genomics, PSI-bi	99.95
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	99.95
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	99.95
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	99.91
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	99.9
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	99.89
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	99.89
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	99.87
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	99.87
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	99.87
3grl_A	651	General vesicular transport factor P115; vesicle t	99.83
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	99.82
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	99.81
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	99.79
3grl_A	651	General vesicular transport factor P115; vesicle t	99.76
2vgl_B	591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	99.75
2vgl_B	591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	99.7
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	99.69
1w63_A	618	Adapter-related protein complex 1 gamma 1 subunit;	99.68
1qgr_A	876	Protein (importin beta subunit); transport recepto	99.65
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	99.65
1w63_A	618	Adapter-related protein complex 1 gamma 1 subunit;	99.64
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	99.61
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	99.59
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	99.58
1qgr_A	876	Protein (importin beta subunit); transport recepto	99.57
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	99.57
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	99.51
2vgl_A	621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	99.51
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	99.49
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	99.48
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	99.47
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	99.45
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	99.45
2vgl_A	621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	99.44
1ho8_A	480	Vacuolar ATP synthase subunit H; heat repeat, hydr	99.0
4gmo_A	684	Putative uncharacterized protein; ARM, heat, solen	98.96
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	98.96
3b2a_A	265	TON_1937, putative uncharacterized protein; heat-r	98.96
3tjz_B	355	Coatomer subunit gamma; protein trafficking, golgi	98.92
4gmo_A	684	Putative uncharacterized protein; ARM, heat, solen	98.9
3b2a_A	265	TON_1937, putative uncharacterized protein; heat-r	98.88
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	98.87
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	98.81
3tjz_B	355	Coatomer subunit gamma; protein trafficking, golgi	98.74
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	98.72
1wa5_C	960	Importin alpha RE-exporter; nuclear transport/comp	98.69
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	98.68
1ho8_A	480	Vacuolar ATP synthase subunit H; heat repeat, hydr	98.66
2qk1_A	249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	98.61
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	98.59
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	98.46
1wa5_C	960	Importin alpha RE-exporter; nuclear transport/comp	98.42
2qk1_A	249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	98.41
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	98.38
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	98.33
3dad_A	339	FH1/FH2 domain-containing protein 1; formin, FHOD1	98.24
3dad_A	339	FH1/FH2 domain-containing protein 1; formin, FHOD1	98.15
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	98.1
2x1g_F	971	Cadmus; transport protein, developmental protein,	98.02
3m1i_C	1049	Exportin-1; heat repeat, GTP-binding, nucleotide-b	97.97
2x1g_F	971	Cadmus; transport protein, developmental protein,	97.93
2x19_B	963	Importin-13; nuclear transport, protein transport;	97.86
2x19_B	963	Importin-13; nuclear transport, protein transport;	97.81
3oc3_A	800	Helicase MOT1, MOT1; regulation of transcription,	97.77
3m1i_C	1049	Exportin-1; heat repeat, GTP-binding, nucleotide-b	97.73
4hat_C	1023	Exportin-1; heat repeat, nuclear export, RAN-ranbp	97.71
1lrv_A	244	LRV, leucine-rich repeat variant; leucine-rich rep	97.71
3ibv_A	980	Exportin-T; karyopherin, heat repeat, cytoplasm, n	97.65
1upk_A	341	MO25 protein; transferase, armadillo; HET: MSE; 1.	97.55
3ibv_A	980	Exportin-T; karyopherin, heat repeat, cytoplasm, n	97.49
4ffb_C	278	Protein STU2; tubulin fold, heat repeats, cytoskel	97.41
2fv2_A	268	RCD1 required for cell differentiation1 homolog; a	97.38
3gjx_A	1073	Exportin-1; transport, cytoplasm, nucleus, RNA-bin	97.21
4hat_C	1023	Exportin-1; heat repeat, nuclear export, RAN-ranbp	97.19
2fv2_A	268	RCD1 required for cell differentiation1 homolog; a	97.18
4ffb_C	278	Protein STU2; tubulin fold, heat repeats, cytoskel	97.15
1upk_A	341	MO25 protein; transferase, armadillo; HET: MSE; 1.	97.12
2of3_A	266	ZYG-9; multifunctional macromolecule, kinetochore,	97.03
2of3_A	266	ZYG-9; multifunctional macromolecule, kinetochore,	96.87
1lrv_A	244	LRV, leucine-rich repeat variant; leucine-rich rep	96.85
3oc3_A	800	Helicase MOT1, MOT1; regulation of transcription,	96.67
3ebb_A	304	Phospholipase A2-activating protein; armadillo rep	96.43
3ebb_A	304	Phospholipase A2-activating protein; armadillo rep	96.13
3l9t_A	240	Putative uncharacterized protein SMU.31; hypotheti	95.83
3u0r_A	507	Apoptosis inhibitor 5; heat repeat, armadillo repe	95.69
2f31_A	233	Diaphanous protein homolog 1; formin,MDIA1, protei	95.38
3u0r_A	507	Apoptosis inhibitor 5; heat repeat, armadillo repe	95.37
3c2g_A	619	SYS-1 protein; beta-catenin, phylogeny, SYS-1, dev	95.08
3l9t_A	240	Putative uncharacterized protein SMU.31; hypotheti	95.07
3eg5_B	383	Protein diaphanous homolog 1; protein-protein comp	95.0
1lsh_A	1056	Lipovitellin (LV-1N, LV-1C); vitellogenin, lipopro	94.19
3a6p_A	1204	Exportin-5; exportin-5, RANGTP, nuclearexport, imp	93.68
3a6p_A	1204	Exportin-5; exportin-5, RANGTP, nuclearexport, imp	93.14
2bnx_A	386	Diaphanous protein homolog 1; autoinhibition, acti	92.68
3gjx_A	1073	Exportin-1; transport, cytoplasm, nucleus, RNA-bin	91.79
3qml_C	315	Protein SLS1, nucleotide exchange factor SIL1; arm	91.1
3c2g_A	619	SYS-1 protein; beta-catenin, phylogeny, SYS-1, dev	90.84
3qml_C	315	Protein SLS1, nucleotide exchange factor SIL1; arm	90.59
1lsh_A	1056	Lipovitellin (LV-1N, LV-1C); vitellogenin, lipopro	90.53
2f31_A	233	Diaphanous protein homolog 1; formin,MDIA1, protei	88.24
3o2t_A	386	Symplekin; heat repeat, scaffold, protein binding;	86.83
3eg5_B	383	Protein diaphanous homolog 1; protein-protein comp	86.17
2bnx_A	386	Diaphanous protein homolog 1; autoinhibition, acti	85.13
3gs3_A	257	Symplekin, LD45768P; helix-turn-helix heat repeat	84.22
3gs3_A	257	Symplekin, LD45768P; helix-turn-helix heat repeat	82.41
1mhq_A	148	ADP-ribosylation factor binding protein GGA2; supe	81.32
3ldz_A	140	STAM-1, signal transducing adapter molecule 1; ubi	80.51

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}

Probab=100.00  E-value=7.5e-42  Score=341.21  Aligned_cols=438  Identities=17%  Similarity=0.127  Sum_probs=363.0

Q ss_pred             HHHhHHHHHHHhhcCCHHHHHHHHHHHHhhc-CCCchhHHHh-hHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHhcC
Q 044999            8 WEEAFNRFEQAVVSGSEALQVKALTKLARVS-KFAPQDILAA-TIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQA   85 (461)
Q Consensus         8 ~~~~~~~l~~ll~~~~~~~~~~a~~~l~~la-~~~~~~~l~~-~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~   85 (461)
                      .++.++.|+.+++++++.++..|..++++++ +...++.+.+ .++.|+.++++    +  ++.++..|+.+|++++..+
T Consensus       288 ~~G~v~~li~Ll~s~~~~~q~~A~~al~~aa~~~~~R~~I~~~gv~~L~~Ll~s----~--~~~vr~~Al~~L~kl~s~~  361 (810)
T 3now_A          288 REGILQMILAMATTDDELQQRVACECLIAASSKKDKAKALCEQGVDILKRLYHS----K--NDGIRVRALVGLCKLGSYG  361 (810)
T ss_dssp             TTTHHHHHHHHHHSSCHHHHHHHHHHHHHHTTSHHHHHTTHHHHHHHHHHHTTC----S--CHHHHHHHHHHHHHHHTTT
T ss_pred             ccchHHHHHHHhCCCCHHHHHHHHHHHHHHcCCcHHHHHHHHcCcHHHHHHHcC----C--CHHHHHHHHHHHHHhcccc
Confidence            4678999999999999999999999999999 8778888777 77999999986    3  3557777999999998632


Q ss_pred             CchhHHHHHhcCC----HHHHHhcCCCC--CHHHHHHHHHHHHHHhccChhhHHHHH-HcCCHHHHHHHhcCCChHHHHH
Q 044999           86 DGALATEIGQSGV----INSVLRLFPQS--DDSFRTVLVKCLRVFVTFGNENRVIVA-RNGGLEIVIDLLNSCNDGTRRY  158 (461)
Q Consensus        86 ~~~~~~~~~~~~~----l~~L~~ll~~~--~~~~~~~~~~~l~~l~~~~~~~~~~~~-~~g~i~~L~~ll~~~~~~~~~~  158 (461)
                      ........++.|.    ++.++++|.++  +++++..++++|.+++. +++.+..++ +.|+++.|++++++.++.++..
T Consensus       362 ~~d~~~~~~~~g~i~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~-~~~vk~~lv~d~g~Ip~LV~LL~s~d~~i~~~  440 (810)
T 3now_A          362 GQDAAIRPFGDGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTL-DAECKEKLIEDKASIHALMDLARGGNQSCLYG  440 (810)
T ss_dssp             TTTTSCCSSTTTHHHHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTT-SHHHHHHHHHCHHHHHHHHHHHHTTCGGGHHH
T ss_pred             ccCccccchhhccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhC-CcHHHHHHHHccchHHHHHHHhCCCChHHHHH
Confidence            2122223334444    55677888877  88899999999999995 446666666 5799999999999999999999


Q ss_pred             HHHHHHHhhCChH------------------------------HH---HHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHH
Q 044999          159 LLEILSALALLRE------------------------------VR---RVLICLGGLRYLVEAVSFGSMVSRERACQAIG  205 (461)
Q Consensus       159 a~~~L~~l~~~~~------------------------------~~---~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~  205 (461)
                      |+++|.|++.+.+                              .+   +.+++.|+++.|+.++.++++.++..|+++|+
T Consensus       441 al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~  520 (810)
T 3now_A          441 VVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLN  520 (810)
T ss_dssp             HHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHH
Confidence            9999999995431                              22   67889999999999999999999999999999


Q ss_pred             HhhcCchhHHHHHhcCChHHHHHhcccCCHHHHHHHHHHHHHHhcCccchhhhh---hcCCHHHHHHHhCCC-ChhHHHH
Q 044999          206 LLAVTGRARRLLVELGVIPGLVELFHIGDWTTKLVAGNTLGVVAAHVEYITPVA---EAGAIPLYAELLQGP-DSTGKEI  281 (461)
Q Consensus       206 ~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~---~~g~i~~L~~ll~~~-~~~~~~~  281 (461)
                      |++.+.+++..+.+.|+++.|+.++.++++..++.|+++|.+++.+.+....+.   ..|++|.|+.++.++ +...+..
T Consensus       521 NLA~d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~e  600 (810)
T 3now_A          521 AVCGLKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFE  600 (810)
T ss_dssp             HHHTSHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHH
T ss_pred             HHcCCHHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHH
Confidence            999887789999999999999999999999999999999999987633222221   246899999999866 3345678


Q ss_pred             HHHHHHHhccCc-ccHHHHH-----HHHHHHhccCCHHHHHHHHHHHHHhhCCCCchhHHhh-cCCHHHHHHhhcCCCHH
Q 044999          282 SEDVFCILAVSE-ANANAIA-----EHLVRILREGDNEANAAAADVLWDLAGYKHSVPVIRN-SGAIPILVNLLRGENDE  354 (461)
Q Consensus       282 a~~~L~~l~~~~-~~~~~i~-----~~l~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~-~g~i~~L~~ll~~~~~~  354 (461)
                      |+.+|.||+..+ +.+..++     +.|+.++.++++.++..|+++|+|++.+++.+..+.. .|.++.|+.++.+.+..
T Consensus       601 Al~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~~~~~~v~~~g~l~~Lv~LL~s~d~~  680 (810)
T 3now_A          601 SLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVKFLALLCEDEDEE  680 (810)
T ss_dssp             HHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHHHHHHHHSSSSHHHHHHHGGGCSSHH
T ss_pred             HHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCChHHHHHHHhccCcHHHHHHHhcCCCHH
Confidence            999999998774 5566666     9999999999999999999999999998888888875 78999999999999999


Q ss_pred             HHHHHHHHHHHhcC-ChhhHHHHHh-CCChHHHHHhccCCCHHHHHHHHHHHHHhcCC-CcchHHHHHhhCCchHHhHHH
Q 044999          355 VREKVSGAIAQLSY-NEADRVALAD-AGAVPIMIELLHDESEELRDNAAESLINFSED-PLQHERISEAIGIPSFQSMQS  431 (461)
Q Consensus       355 v~~~a~~~L~~l~~-~~~~~~~~~~-~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~-~~~~~~l~~~~~~~~~~~l~~  431 (461)
                      ++..|+++|++++. ++...+.+++ .|+++.|++++.+++.+++..|+++|.|++.. ++..+.+.+.|+++.+.++++
T Consensus       681 vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~~s~e~~~~l~e~G~i~~L~~LL~  760 (810)
T 3now_A          681 TATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMINAGEEIAKKLFETDIMELLSGLGQ  760 (810)
T ss_dssp             HHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHTSTHHHHHTTSCC
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHh
Confidence            99999999999999 8888888888 89999999999999999999999999999764 456677887777777666654


Q ss_pred             HHHHhhhchhHHHHHHHHHhHhhhc
Q 044999          432 RLTRIRASDDLMARSMRRMSIEQLT  456 (461)
Q Consensus       432 ~l~~~~~~~~~~~~~~~~~~~~~~~  456 (461)
                      .    .++.+..+.+.+..+++.+.
T Consensus       761 ~----~d~~~~~i~e~Al~aL~~ll  781 (810)
T 3now_A          761 L----PDDTRAKAREVATQCLAAAE  781 (810)
T ss_dssp             C----TTSTTHHHHHHHHHHHHHHH
T ss_pred             C----cccCcHHHHHHHHHHHHHHH
Confidence            1    11235567777777766653

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A

Probab=100.00  E-value=1.6e-39  Score=321.93  Aligned_cols=434  Identities=18%  Similarity=0.203  Sum_probs=371.9

Q ss_pred             HHhHHHHHHHhhcCCHHHHHHHHHHHHhhc-CCCchhHHHh---hHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHhc
Q 044999            9 EEAFNRFEQAVVSGSEALQVKALTKLARVS-KFAPQDILAA---TIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQ   84 (461)
Q Consensus         9 ~~~~~~l~~ll~~~~~~~~~~a~~~l~~la-~~~~~~~l~~---~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~   84 (461)
                      ...++.|+.+++++++.++..|+..|++++ ++..+..+..   .++.++++|..    + +++++++.++.+|.+++. 
T Consensus        16 ~~~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~----~-~~~~~~~~a~~~L~~ls~-   89 (529)
T 1jdh_A           16 TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQN----T-NDVETARCTAGTLHNLSH-   89 (529)
T ss_dssp             -CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHH----C-CCHHHHHHHHHHHHHHTT-
T ss_pred             HhhHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhc----C-CCHHHHHHHHHHHHHHHc-
Confidence            456899999999999999999999999999 6666655553   89999999985    3 367889999999999998 


Q ss_pred             CCchhHHHHHhcCCHHHHHhcCCCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHH
Q 044999           85 ADGALATEIGQSGVINSVLRLFPQSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLNSCNDGTRRYLLEILS  164 (461)
Q Consensus        85 ~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~  164 (461)
                       +++++..+.+.|+++.|+++++++++.++..++.++.+++..++..+..+.+.|+++.|+++++++++.++..++.+|.
T Consensus        90 -~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~  168 (529)
T 1jdh_A           90 -HREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQ  168 (529)
T ss_dssp             -SHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHH
T ss_pred             -CchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHH
Confidence             6779999999999999999999999999999999999999887788899999999999999999999999999999999


Q ss_pred             Hhh-CChHHHHHHHhcCCHHHHHHHHcCC-CHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhcc-----------
Q 044999          165 ALA-LLREVRRVLICLGGLRYLVEAVSFG-SMVSRERACQAIGLLAVTGRARRLLVELGVIPGLVELFH-----------  231 (461)
Q Consensus       165 ~l~-~~~~~~~~~~~~~~l~~l~~~l~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~-----------  231 (461)
                      +++ .+++.+..+.+.|+++.++.++.++ +...+..++.+|.+++..++.+..+.+.|+++.|+.++.           
T Consensus       169 ~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~  248 (529)
T 1jdh_A          169 ILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCL  248 (529)
T ss_dssp             HHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHH
T ss_pred             HHHhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhCCChHHHHHHH
Confidence            999 5788999999999999999999877 456777889999999988777777777777666665554           


Q ss_pred             ----------------------------cCCHHHHHHHHHHHHHHhcC-ccchhhhhhcCCHHHHHHHhCC--CChhHHH
Q 044999          232 ----------------------------IGDWTTKLVAGNTLGVVAAH-VEYITPVAEAGAIPLYAELLQG--PDSTGKE  280 (461)
Q Consensus       232 ----------------------------~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~g~i~~L~~ll~~--~~~~~~~  280 (461)
                                                  +++++++..++++|++++.+ ++++..+.+.|+++.|+.++.+  .+++++.
T Consensus       249 ~~L~~l~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~  328 (529)
T 1jdh_A          249 WTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITE  328 (529)
T ss_dssp             HHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHhcCChhhHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHH
Confidence                                        45667777788888888776 5678888889999999999975  3479999


Q ss_pred             HHHHHHHHhccCccc----HHHHH-----HHHHHHhccCC-HHHHHHHHHHHHHhhCCCCchhHHhhcCCHHHHHHhhcC
Q 044999          281 ISEDVFCILAVSEAN----ANAIA-----EHLVRILREGD-NEANAAAADVLWDLAGYKHSVPVIRNSGAIPILVNLLRG  350 (461)
Q Consensus       281 ~a~~~L~~l~~~~~~----~~~i~-----~~l~~ll~~~~-~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~ll~~  350 (461)
                      .++.+|.|++.....    +..+.     +.+++++.+++ +.++..++++|+|++.+++++..+.+.|+++.|++++.+
T Consensus       329 ~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~i~~L~~ll~~  408 (529)
T 1jdh_A          329 PAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVR  408 (529)
T ss_dssp             HHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhcChhhhHHHHHcCCHHHHHHHHHH
Confidence            999999999775332    33444     99999998876 799999999999999988888999999999999999987


Q ss_pred             CCHHHHH----------------------HHHHHHHHhcCChhhHHHHHhCCChHHHHHhccCCCHHHHHHHHHHHHHhc
Q 044999          351 ENDEVRE----------------------KVSGAIAQLSYNEADRVALADAGAVPIMIELLHDESEELRDNAAESLINFS  408 (461)
Q Consensus       351 ~~~~v~~----------------------~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~  408 (461)
                      +++.++.                      .++.+|++|+.+++++..+.+.|+++.|+.++.++++.++..++++|.+++
T Consensus       409 ~~~~v~~~a~~~l~n~~~~~~~~~~~i~~~~~~al~~L~~~~~~~~~l~~~~~v~~l~~ll~~~~~~v~~~a~~~l~~l~  488 (529)
T 1jdh_A          409 AHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELA  488 (529)
T ss_dssp             HHHHHC-----------CBTTBCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHT
T ss_pred             HhHHHHHHHhcccCchhhhccccHHHHHHHHHHHHHHHhcCchHHHHHhccCCccHHHHHHcCCchHHHHHHHHHHHHHh
Confidence            6666655                      455666778888888999999999999999999999999999999999999


Q ss_pred             CCCcchHHHHHhhCCchHHhHHHHHHHhhhchhHHHHHHHHHhHhhhc
Q 044999          409 EDPLQHERISEAIGIPSFQSMQSRLTRIRASDDLMARSMRRMSIEQLT  456 (461)
Q Consensus       409 ~~~~~~~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~  456 (461)
                      .+++....+.+.++++.+.++++      + .++.+++.+..++++++
T Consensus       489 ~~~~~~~~i~~~~~~~~L~~l~~------~-~~~~v~~~a~~aL~~l~  529 (529)
T 1jdh_A          489 QDKEAAEAIEAEGATAPLTELLH------S-RNEGVATYAAAVLFRMS  529 (529)
T ss_dssp             TSHHHHHHHHHTTCHHHHHHGGG------C-SSHHHHHHHHHHHHHHC
T ss_pred             cCHHHHHHHHHcCChHHHHHHhc------C-CCHHHHHHHHHHHHhcC
Confidence            88888888988888888776664      3 47789999999988874

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}

Probab=100.00  E-value=6.6e-39  Score=323.69  Aligned_cols=437  Identities=18%  Similarity=0.204  Sum_probs=377.7

Q ss_pred             HHhHHHHHHHhhcCCHHHHHHHHHHHHhhc-CCCchhHHHh---hHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHhc
Q 044999            9 EEAFNRFEQAVVSGSEALQVKALTKLARVS-KFAPQDILAA---TIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQ   84 (461)
Q Consensus         9 ~~~~~~l~~ll~~~~~~~~~~a~~~l~~la-~~~~~~~l~~---~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~   84 (461)
                      ...++.|+.+++++++.++..|+..|++++ +...+..+..   +++.+++.|.+    + +++++++.|+.+|.+++. 
T Consensus        13 ~g~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~----~-~~~~~~~~A~~~L~~Ls~-   86 (644)
T 2z6h_A           13 TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQN----T-NDVETARCTAGTLHNLSH-   86 (644)
T ss_dssp             TTTHHHHHHHHTCSCHHHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHS----C-CCHHHHHHHHHHHHHHTT-
T ss_pred             hchHHHHHHHHcCCCHHHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhc----C-CCHHHHHHHHHHHHHHhc-
Confidence            346899999999999999999999999999 6666666553   79999999985    3 467899999999999998 


Q ss_pred             CCchhHHHHHhcCCHHHHHhcCCCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHH
Q 044999           85 ADGALATEIGQSGVINSVLRLFPQSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLNSCNDGTRRYLLEILS  164 (461)
Q Consensus        85 ~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~  164 (461)
                       +.+.+..+.+.|+++.|+++|+++++.++..++.++.+++...+..+..+.+.|+++.|++++++.++.++..++.+|.
T Consensus        87 -~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~  165 (644)
T 2z6h_A           87 -HREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQ  165 (644)
T ss_dssp             -SHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHH
T ss_pred             -ChhhHHHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHH
Confidence             6678999999999999999999999999999999999999887788889999999999999999999999999999999


Q ss_pred             Hhh-CChHHHHHHHhcCCHHHHHHHHcCC-CHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhcc-----------
Q 044999          165 ALA-LLREVRRVLICLGGLRYLVEAVSFG-SMVSRERACQAIGLLAVTGRARRLLVELGVIPGLVELFH-----------  231 (461)
Q Consensus       165 ~l~-~~~~~~~~~~~~~~l~~l~~~l~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~-----------  231 (461)
                      +++ .+++.+..+.+.|+++.|+.++.+. ....+..++.+|.+++...+.+..+.+.|+++.|+.++.           
T Consensus       166 ~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~  245 (644)
T 2z6h_A          166 ILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCL  245 (644)
T ss_dssp             HHHTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHH
T ss_pred             HHHhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHH
Confidence            999 5889999999999999999999877 467888999999999988878888888887777766554           


Q ss_pred             ----------------------------cCCHHHHHHHHHHHHHHhcC-ccchhhhhhcCCHHHHHHHhCCC--ChhHHH
Q 044999          232 ----------------------------IGDWTTKLVAGNTLGVVAAH-VEYITPVAEAGAIPLYAELLQGP--DSTGKE  280 (461)
Q Consensus       232 ----------------------------~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~g~i~~L~~ll~~~--~~~~~~  280 (461)
                                                  +++++++..++++|.+|+.. ++++..+.+.|+++.|+.++.+.  .++++.
T Consensus       246 ~~L~nL~~~~~~~~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~  325 (644)
T 2z6h_A          246 WTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITE  325 (644)
T ss_dssp             HHHHHHGGGCTTCCSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHhhcchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHH
Confidence                                        45667777778888888776 56778888899999999999763  379999


Q ss_pred             HHHHHHHHhccCcc----cHHHHH-----HHHHHHhccCC-HHHHHHHHHHHHHhhCCCCchhHHhhcCCHHHHHHhhcC
Q 044999          281 ISEDVFCILAVSEA----NANAIA-----EHLVRILREGD-NEANAAAADVLWDLAGYKHSVPVIRNSGAIPILVNLLRG  350 (461)
Q Consensus       281 ~a~~~L~~l~~~~~----~~~~i~-----~~l~~ll~~~~-~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~ll~~  350 (461)
                      .++.+|.|++....    .+..+.     +.|+++|.+.+ +.++..|+++|+|++.+++++..+.+.|+++.|++++.+
T Consensus       326 ~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~~~~~~i~~~~~i~~Lv~lL~~  405 (644)
T 2z6h_A          326 PAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVR  405 (644)
T ss_dssp             HHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHccCHHHHHHHHHcCCHHHHHHHHhc
Confidence            99999999976432    223233     99999998875 799999999999999998888999999999999999976


Q ss_pred             C----------------------CHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhccCCCHHHHHHHHHHHHHhc
Q 044999          351 E----------------------NDEVREKVSGAIAQLSYNEADRVALADAGAVPIMIELLHDESEELRDNAAESLINFS  408 (461)
Q Consensus       351 ~----------------------~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~  408 (461)
                      .                      +.+++..++.+|++|+.++.++..+.+.|+++.|++++.++++.++..++++|.+++
T Consensus       406 ~~~~vr~~a~~al~n~~~~~~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~  485 (644)
T 2z6h_A          406 AHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELA  485 (644)
T ss_dssp             HHHHHTTC----------CCSSCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred             cchhhhhHhhhccccchhcccccHHHHHHHHHHHHHHHhcCHHHHHHHHhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence            3                      345777899999999998899999999999999999999999999999999999999


Q ss_pred             CCCcchHHHHHhhCCchHHhHHHHHHHhhhchhHHHHHHHHHhHhhhccCC
Q 044999          409 EDPLQHERISEAIGIPSFQSMQSRLTRIRASDDLMARSMRRMSIEQLTWDP  459 (461)
Q Consensus       409 ~~~~~~~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p  459 (461)
                      .+++.+..+.+.++++.+..+++       +.++.+++.+..++.++..++
T Consensus       486 ~~~~~~~~i~~~g~l~~L~~ll~-------~~~~~vr~~A~~aL~~l~~~~  529 (644)
T 2z6h_A          486 QDKEAAEAIEAEGATAPLTELLH-------SRNEGVATYAAAVLFRMSEDK  529 (644)
T ss_dssp             TSHHHHHHHHHTTCHHHHHHHTT-------CSCHHHHHHHHHHHHHHTTTS
T ss_pred             cCHHHHHHHHHcCChhHHHHHHc-------CCCHHHHHHHHHHHHHHhccC
Confidence            88888888888888776665543       347779999999998888765

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}

Probab=100.00  E-value=2.1e-39  Score=323.58  Aligned_cols=424  Identities=15%  Similarity=0.161  Sum_probs=356.0

Q ss_pred             HhhcCCHHHHHHHHHHHHhhc--CCCchhHHH-h--hHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHhcCCchhHHH
Q 044999           18 AVVSGSEALQVKALTKLARVS--KFAPQDILA-A--TIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQADGALATE   92 (461)
Q Consensus        18 ll~~~~~~~~~~a~~~l~~la--~~~~~~~l~-~--~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~   92 (461)
                      .+...+..-...|+.++.++.  .......+. .  .++.++.++.+      +++.+|..|++++.+++.  +..+++.
T Consensus       255 ~~~~~~~~~~~~a~~alt~i~~g~~~~~~~~~~~~G~v~~li~Ll~s------~~~~~q~~A~~al~~aa~--~~~~R~~  326 (810)
T 3now_A          255 KLLAPDMESKVRVTVAITALLNGPLDVGNQVVAREGILQMILAMATT------DDELQQRVACECLIAASS--KKDKAKA  326 (810)
T ss_dssp             HHSSCCHHHHHHHHHHHHHHHSSSHHHHHHHHHTTTHHHHHHHHHHS------SCHHHHHHHHHHHHHHTT--SHHHHHT
T ss_pred             HhccCChHhHHHHHHHHHHHhcCCHHHHHHHHhccchHHHHHHHhCC------CCHHHHHHHHHHHHHHcC--CcHHHHH
Confidence            444677788889999999998  444444443 4  99999999987      567788889999999888  7889999


Q ss_pred             HHhcCCHHHHHhcCCCCCHHHHHHHHHHHHHHhccCh-hhHHHHHHcCC----HHHHHHHhcCC--ChHHHHHHHHHHHH
Q 044999           93 IGQSGVINSVLRLFPQSDDSFRTVLVKCLRVFVTFGN-ENRVIVARNGG----LEIVIDLLNSC--NDGTRRYLLEILSA  165 (461)
Q Consensus        93 ~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~-~~~~~~~~~g~----i~~L~~ll~~~--~~~~~~~a~~~L~~  165 (461)
                      +.+.|+ +.|+.+++++++.++..++.+|+++..... +......+.|.    ++.|.++|.++  +++++..|+++|.+
T Consensus       327 I~~~gv-~~L~~Ll~s~~~~vr~~Al~~L~kl~s~~~~d~~~~~~~~g~i~~Lv~~l~~lL~~~~~d~~v~~~AveaLay  405 (810)
T 3now_A          327 LCEQGV-DILKRLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDKDIRRWAADGLAY  405 (810)
T ss_dssp             THHHHH-HHHHHHTTCSCHHHHHHHHHHHHHHHTTTTTTTSCCSSTTTHHHHHHHHHHHHHHCSSCCSSHHHHHHHHHHH
T ss_pred             HHHcCc-HHHHHHHcCCCHHHHHHHHHHHHHhccccccCccccchhhccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Confidence            999886 999999999999999999999999874321 22212222343    56678888887  88999999999999


Q ss_pred             hhCChHHHHHHHh-cCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCch------------------------------hH
Q 044999          166 LALLREVRRVLIC-LGGLRYLVEAVSFGSMVSRERACQAIGLLAVTGR------------------------------AR  214 (461)
Q Consensus       166 l~~~~~~~~~~~~-~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~------------------------------~~  214 (461)
                      ++.+++.+..+.. .|+++.|+.++++++..++..++++|.|++...+                              .+
T Consensus       406 LS~~~~vk~~lv~d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~  485 (810)
T 3now_A          406 LTLDAECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFIN  485 (810)
T ss_dssp             HTTSHHHHHHHHHCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHH
T ss_pred             HhCCcHHHHHHHHccchHHHHHHHhCCCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHH
Confidence            9999999998885 6899999999999999999999999999998542                              12


Q ss_pred             ---HHHHhcCChHHHHHhcccCCHHHHHHHHHHHHHHhcCccchhhhhhcCCHHHHHHHhCCCChhHHHHHHHHHHHhcc
Q 044999          215 ---RLLVELGVIPGLVELFHIGDWTTKLVAGNTLGVVAAHVEYITPVAEAGAIPLYAELLQGPDSTGKEISEDVFCILAV  291 (461)
Q Consensus       215 ---~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~  291 (461)
                         +.+.+.|+++.|+.++.++++.+++.|+++|.|++.+++++..+++.|++|.|+.++.++++..++.|+++|.|++.
T Consensus       486 ~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~  565 (810)
T 3now_A          486 KRITVLANEGITTALCALAKTESHNSQELIARVLNAVCGLKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGI  565 (810)
T ss_dssp             HHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhc
Confidence               57888999999999999999999999999999999988899999999999999999999999999999999999965


Q ss_pred             CcccHH--------HHHHHHHHHhccC-CHHHHHHHHHHHHHhhCC-CCchhHHhhcCCHHHHHHhhcCCCHHHHHHHHH
Q 044999          292 SEANAN--------AIAEHLVRILREG-DNEANAAAADVLWDLAGY-KHSVPVIRNSGAIPILVNLLRGENDEVREKVSG  361 (461)
Q Consensus       292 ~~~~~~--------~i~~~l~~ll~~~-~~~~~~~a~~~L~~l~~~-~~~~~~l~~~g~i~~L~~ll~~~~~~v~~~a~~  361 (461)
                      +.+...        ..+++|+++|.++ +...+..|+++|.||+.. ++++..+++.|+++.|+.++.++++.++..|++
T Consensus       566 ~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~  645 (810)
T 3now_A          566 TINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQ  645 (810)
T ss_dssp             HSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHH
T ss_pred             CCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHH
Confidence            432211        1229999999866 455667999999999976 577889999999999999999999999999999


Q ss_pred             HHHHhcCChhhHHHHHh-CCChHHHHHhccCCCHHHHHHHHHHHHHhcC-CCcchHHHHH-hhCCchHHhHHHHHHHhhh
Q 044999          362 AIAQLSYNEADRVALAD-AGAVPIMIELLHDESEELRDNAAESLINFSE-DPLQHERISE-AIGIPSFQSMQSRLTRIRA  438 (461)
Q Consensus       362 ~L~~l~~~~~~~~~~~~-~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~-~~~~~~~l~~-~~~~~~~~~l~~~l~~~~~  438 (461)
                      +|+|++.+++.+..+.+ .|.++.|+.++.+++..++..|+++|.||+. ++...+.+.+ .++++.+..++       .
T Consensus       646 ~L~NLa~~~~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL-------~  718 (810)
T 3now_A          646 CLCNLVMSEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLI-------A  718 (810)
T ss_dssp             HHHHHTTSHHHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHH-------T
T ss_pred             HHHHHhCChHHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHH-------C
Confidence            99999998888888885 7889999999999999999999999999987 6666667766 55555555444       3


Q ss_pred             chhHHHHHHHHHhHhhhcc
Q 044999          439 SDDLMARSMRRMSIEQLTW  457 (461)
Q Consensus       439 ~~~~~~~~~~~~~~~~~~~  457 (461)
                      +.+..+++.+-.++.++++
T Consensus       719 s~d~~vq~~A~~aL~NL~~  737 (810)
T 3now_A          719 NPSPAVQHRGIVIILNMIN  737 (810)
T ss_dssp             CSSHHHHHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHHHHHHh
Confidence            4578899999999888875

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...

Probab=100.00  E-value=3.3e-38  Score=309.00  Aligned_cols=394  Identities=20%  Similarity=0.250  Sum_probs=342.8

Q ss_pred             hHHHHHHHhhcCCHHHHHHHHHHHHhhc---CCCchhHHHh--hHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHhcC
Q 044999           11 AFNRFEQAVVSGSEALQVKALTKLARVS---KFAPQDILAA--TIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQA   85 (461)
Q Consensus        11 ~~~~l~~ll~~~~~~~~~~a~~~l~~la---~~~~~~~l~~--~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~   85 (461)
                      .++.+++.++|+|+..+..|+..+..+.   ...+.+.+.+  +||.|+++|+.     ++++.+|..|+++|.+++.+ 
T Consensus        58 ~i~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~-----~~~~~lq~~Aa~aL~nias~-  131 (510)
T 3ul1_B           58 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGK-----TDCSPIQFESAWALTNIASG-  131 (510)
T ss_dssp             CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTC-----TTCHHHHHHHHHHHHHHHTS-
T ss_pred             hHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCC-----CCCHHHHHHHHHHHHHHhcC-
Confidence            4789999999999999999999998865   3334455555  99999999984     35688999999999999986 


Q ss_pred             CchhHHHHHhcCCHHHHHhcCCCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhcCCCh-----HHHHHHH
Q 044999           86 DGALATEIGQSGVINSVLRLFPQSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLNSCND-----GTRRYLL  160 (461)
Q Consensus        86 ~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~-----~~~~~a~  160 (461)
                      +.+.+..+.+.|+++.|+++|+++++.++..++++|.+++.++++.+..+.+.|+++.|+.++...+.     .....++
T Consensus       132 ~~e~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~  211 (510)
T 3ul1_B          132 TSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLT  211 (510)
T ss_dssp             CHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHH
T ss_pred             CHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHH
Confidence            78888899999999999999999999999999999999999899999999999999999999987653     4678899


Q ss_pred             HHHHHhhCChHHH-HHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCchh-HHHHHhcCChHHHHHhcccCCHHHH
Q 044999          161 EILSALALLREVR-RVLICLGGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRA-RRLLVELGVIPGLVELFHIGDWTTK  238 (461)
Q Consensus       161 ~~L~~l~~~~~~~-~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~-~~~~~~~~~i~~L~~ll~~~~~~~~  238 (461)
                      +++.+++.+.... ......++++.|+.++.+++++++..++++|.+++..... ...+.+.|+++.|+.++.+++..++
T Consensus       212 ~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~  291 (510)
T 3ul1_B          212 WTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIV  291 (510)
T ss_dssp             HHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHH
T ss_pred             HHHHHHhhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhh
Confidence            9999999654333 3333457899999999999999999999999999998877 6678889999999999999999999


Q ss_pred             HHHHHHHHHHhcC-ccchhhhhhcCCHHHHHHHhCCCChhHHHHHHHHHHHhccCccc-HHHHH-----HHHHHHhccCC
Q 044999          239 LVAGNTLGVVAAH-VEYITPVAEAGAIPLYAELLQGPDSTGKEISEDVFCILAVSEAN-ANAIA-----EHLVRILREGD  311 (461)
Q Consensus       239 ~~a~~~L~~l~~~-~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~-~~~i~-----~~l~~ll~~~~  311 (461)
                      ..++.+|+|++.. +..+..+.+.|+++.|+.++.++++.+++.++++|.|++..... +..+.     +.++.++.+++
T Consensus       292 ~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~  371 (510)
T 3ul1_B          292 TPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKAD  371 (510)
T ss_dssp             HHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSC
T ss_pred             hHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCC
Confidence            9999999999887 67778888999999999999999999999999999999765554 34343     99999999999


Q ss_pred             HHHHHHHHHHHHHhhC--CCCchhHHhhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcC-C------hhhHHHHHhCCCh
Q 044999          312 NEANAAAADVLWDLAG--YKHSVPVIRNSGAIPILVNLLRGENDEVREKVSGAIAQLSY-N------EADRVALADAGAV  382 (461)
Q Consensus       312 ~~~~~~a~~~L~~l~~--~~~~~~~l~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~-~------~~~~~~~~~~~~i  382 (461)
                      ++++..|+++|+|++.  .++....+++.|+++.|+.+|.+.++.++..++.+|.++.. .      ...+..+.+.|++
T Consensus       372 ~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl  451 (510)
T 3ul1_B          372 FKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGL  451 (510)
T ss_dssp             HHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTHH
T ss_pred             HHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccchHHHHHHHHHcCcH
Confidence            9999999999999995  45667789999999999999999999999999999999875 1      2234567789999


Q ss_pred             HHHHHhccCCCHHHHHHHHHHHHHhcCC
Q 044999          383 PIMIELLHDESEELRDNAAESLINFSED  410 (461)
Q Consensus       383 ~~L~~ll~~~~~~~~~~a~~~L~~l~~~  410 (461)
                      +.|-.+..+++.++.+.|..+|-.....
T Consensus       452 ~~ie~Lq~~~n~~i~~~A~~iie~yf~~  479 (510)
T 3ul1_B          452 DKIEALQRHENESVYKASLNLIEKYFSV  479 (510)
T ss_dssp             HHHHHGGGCSSHHHHHHHHHHHHHHCC-
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHCCC
Confidence            9999999999999999999999887543

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...

Probab=100.00  E-value=2.2e-38  Score=310.23  Aligned_cols=392  Identities=15%  Similarity=0.154  Sum_probs=333.3

Q ss_pred             hHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHhcCCC-CCHHHHHHHHHHHHHHhcc
Q 044999           49 TIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQADGALATEIGQSGVINSVLRLFPQ-SDDSFRTVLVKCLRVFVTF  127 (461)
Q Consensus        49 ~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~ll~~-~~~~~~~~~~~~l~~l~~~  127 (461)
                      .|+.+++.+.+      +|+..|..|+..++.+.+.......+.+++.|++|.|+++|++ +++.+|..|+++|.+++..
T Consensus        58 ~i~~~v~~l~s------~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~  131 (510)
T 3ul1_B           58 SVEDIVKGINS------NNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASG  131 (510)
T ss_dssp             CHHHHHHHHTS------SCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTS
T ss_pred             hHHHHHHHhcC------CCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcC
Confidence            58999999986      6788999999999998764234456788899999999999975 5688999999999999999


Q ss_pred             ChhhHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHhh-CChHHHHHHHhcCCHHHHHHHHcCCC-----HHHHHHHH
Q 044999          128 GNENRVIVARNGGLEIVIDLLNSCNDGTRRYLLEILSALA-LLREVRRVLICLGGLRYLVEAVSFGS-----MVSRERAC  201 (461)
Q Consensus       128 ~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~-~~~~~~~~~~~~~~l~~l~~~l~~~~-----~~~~~~a~  201 (461)
                      +++++..+++.|+++.|+.+|+++++.+++.|+++|++++ .+++.+..+.+.|+++.++.++...+     ..+.+.++
T Consensus       132 ~~e~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~  211 (510)
T 3ul1_B          132 TSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLT  211 (510)
T ss_dssp             CHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHH
T ss_pred             CHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHH
Confidence            9999999999999999999999999999999999999999 45788999999999999999998664     35788999


Q ss_pred             HHHHHhhcCchh-HHHHHhcCChHHHHHhcccCCHHHHHHHHHHHHHHhcCc-cchhhhhhcCCHHHHHHHhCCCChhHH
Q 044999          202 QAIGLLAVTGRA-RRLLVELGVIPGLVELFHIGDWTTKLVAGNTLGVVAAHV-EYITPVAEAGAIPLYAELLQGPDSTGK  279 (461)
Q Consensus       202 ~~L~~l~~~~~~-~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~g~i~~L~~ll~~~~~~~~  279 (461)
                      +++.+++..... .......++++.|+.++.+++++++..++++|.+|+.+. +....+.+.|+++.|+.++.+.++.++
T Consensus       212 ~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~  291 (510)
T 3ul1_B          212 WTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIV  291 (510)
T ss_dssp             HHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHH
T ss_pred             HHHHHHhhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhh
Confidence            999999987765 444455678999999999999999999999999999884 455667788999999999999999999


Q ss_pred             HHHHHHHHHhccCccc-HHHHH-----HHHHHHhccCCHHHHHHHHHHHHHhhCC-CCchhHHhhcCCHHHHHHhhcCCC
Q 044999          280 EISEDVFCILAVSEAN-ANAIA-----EHLVRILREGDNEANAAAADVLWDLAGY-KHSVPVIRNSGAIPILVNLLRGEN  352 (461)
Q Consensus       280 ~~a~~~L~~l~~~~~~-~~~i~-----~~l~~ll~~~~~~~~~~a~~~L~~l~~~-~~~~~~l~~~g~i~~L~~ll~~~~  352 (461)
                      ..++.+|.|++..++. ...+.     +.|+.+++++++.++..|+++|.|++.+ ++....+.+.|+++.|+.++.+++
T Consensus       292 ~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~  371 (510)
T 3ul1_B          292 TPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKAD  371 (510)
T ss_dssp             HHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSC
T ss_pred             hHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCC
Confidence            9999999999765554 44444     8888999999999999999999999964 567788889999999999999999


Q ss_pred             HHHHHHHHHHHHHhcC--ChhhHHHHHhCCChHHHHHhccCCCHHHHHHHHHHHHHhcCCCc-------chHHHHHhhCC
Q 044999          353 DEVREKVSGAIAQLSY--NEADRVALADAGAVPIMIELLHDESEELRDNAAESLINFSEDPL-------QHERISEAIGI  423 (461)
Q Consensus       353 ~~v~~~a~~~L~~l~~--~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~-------~~~~l~~~~~~  423 (461)
                      ..++..|+++|+|++.  +++....+++.|+++.|+.++++.+++++..++++|.|+....+       ....+.+.||+
T Consensus       372 ~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl  451 (510)
T 3ul1_B          372 FKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGL  451 (510)
T ss_dssp             HHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTHH
T ss_pred             HHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccchHHHHHHHHHcCcH
Confidence            9999999999999998  67778889999999999999999999999999999999964321       23456677777


Q ss_pred             chHHhHHHHHHHhhhchhHHHHHHHHHhHh
Q 044999          424 PSFQSMQSRLTRIRASDDLMARSMRRMSIE  453 (461)
Q Consensus       424 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~  453 (461)
                      ..++.++.       ..++.+.+.|..+++
T Consensus       452 ~~ie~Lq~-------~~n~~i~~~A~~iie  474 (510)
T 3ul1_B          452 DKIEALQR-------HENESVYKASLNLIE  474 (510)
T ss_dssp             HHHHHGGG-------CSSHHHHHHHHHHHH
T ss_pred             HHHHHHHc-------CCCHHHHHHHHHHHH
Confidence            66665543       234556665555553

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}

Probab=100.00  E-value=4.6e-38  Score=322.09  Aligned_cols=438  Identities=18%  Similarity=0.213  Sum_probs=376.0

Q ss_pred             HHhHHHHHHHhhcCCHHHHHHHHHHHHhhc-CCCchhHHHh---hHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHhc
Q 044999            9 EEAFNRFEQAVVSGSEALQVKALTKLARVS-KFAPQDILAA---TIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQ   84 (461)
Q Consensus         9 ~~~~~~l~~ll~~~~~~~~~~a~~~l~~la-~~~~~~~l~~---~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~   84 (461)
                      ...++.|+.++.++++.+|..|+.+|++|+ +...+..+..   +++.|++.|+.    + +++.+++.|+.+|.+++. 
T Consensus       149 ~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~~~~~i~~~~~~i~~Lv~~L~~----~-~d~~vr~~Aa~aL~~Ls~-  222 (780)
T 2z6g_A          149 TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQN----T-NDVETARCTSGTLHNLSH-  222 (780)
T ss_dssp             HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTSHHHHHHHTTCHHHHHHHHHHHHH----C-CCHHHHHHHHHHHHHHHT-
T ss_pred             hCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCCChhHHHHHhccChHHHHHHHHcC----C-CCHHHHHHHHHHHHHHhC-
Confidence            567899999999999999999999999999 6656666553   89999999986    4 368899999999999998 


Q ss_pred             CCchhHHHHHhcCCHHHHHhcCCCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHH
Q 044999           85 ADGALATEIGQSGVINSVLRLFPQSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLNSCNDGTRRYLLEILS  164 (461)
Q Consensus        85 ~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~  164 (461)
                       ...++..+.+.|+++.|+++|+++++.++..++.+|.+++...+..+..+.+.|+++.|++++.+.+..++..++.+|.
T Consensus       223 -~~~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~  301 (780)
T 2z6g_A          223 -HREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQ  301 (780)
T ss_dssp             -SHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHH
T ss_pred             -CchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHH
Confidence             6777888999999999999999999999999999999999887788899999999999999999999999999999999


Q ss_pred             Hhh-CChHHHHHHHhcCCHHHHHHHHcCCC-HHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHH--------------
Q 044999          165 ALA-LLREVRRVLICLGGLRYLVEAVSFGS-MVSRERACQAIGLLAVTGRARRLLVELGVIPGLVE--------------  228 (461)
Q Consensus       165 ~l~-~~~~~~~~~~~~~~l~~l~~~l~~~~-~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~--------------  228 (461)
                      +++ .+++.+..+.+.|+++.|+.++++.+ ...+..++.+|.+++.....+..+.+.|+++.|+.              
T Consensus       302 ~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~  381 (780)
T 2z6g_A          302 ILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCL  381 (780)
T ss_dssp             HHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSTTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHH
T ss_pred             HHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHHHHHHHHhchHHHHHHHHcCCchHHHHHHH
Confidence            999 67889999999999999999998774 45667888999999987766777766666555554              


Q ss_pred             -------------------------hcccCCHHHHHHHHHHHHHHhcC-ccchhhhhhcCCHHHHHHHhCCC-C-hhHHH
Q 044999          229 -------------------------LFHIGDWTTKLVAGNTLGVVAAH-VEYITPVAEAGAIPLYAELLQGP-D-STGKE  280 (461)
Q Consensus       229 -------------------------ll~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~g~i~~L~~ll~~~-~-~~~~~  280 (461)
                                               ++.+.++.++..|+++|++|+.. ++.+..+.+.|+++.|+.++.+. + .+++.
T Consensus       382 ~~L~~L~~~~~~~~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~  461 (780)
T 2z6g_A          382 WTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITE  461 (780)
T ss_dssp             HHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHhccchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHH
Confidence                                     44556677788888888888877 56778888889999999999763 3 48999


Q ss_pred             HHHHHHHHhccCccc----HHHHH-----HHHHHHhccCC-HHHHHHHHHHHHHhhCCCCchhHHhhcCCHHHHHHhhcC
Q 044999          281 ISEDVFCILAVSEAN----ANAIA-----EHLVRILREGD-NEANAAAADVLWDLAGYKHSVPVIRNSGAIPILVNLLRG  350 (461)
Q Consensus       281 ~a~~~L~~l~~~~~~----~~~i~-----~~l~~ll~~~~-~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~ll~~  350 (461)
                      .++.+|.|++.....    +..+.     +.|+++|.+.+ +.++..|+++|+|++.+++++..+.+.|+++.|++++.+
T Consensus       462 ~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~  541 (780)
T 2z6g_A          462 PAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVR  541 (780)
T ss_dssp             HHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHHSSHHHHHHHHHTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHHHhcCHHHHHHHHHCCCHHHHHHHHHh
Confidence            999999999764332    23343     99999998876 599999999999999988888889999999999999975


Q ss_pred             CC----------------------HHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhccCCCHHHHHHHHHHHHHhc
Q 044999          351 EN----------------------DEVREKVSGAIAQLSYNEADRVALADAGAVPIMIELLHDESEELRDNAAESLINFS  408 (461)
Q Consensus       351 ~~----------------------~~v~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~  408 (461)
                      ++                      ++++..++.+|++|+.++.++..+.+.|+++.|+.++.++++.++..++.+|.+|+
T Consensus       542 ~~~~~~~~aa~al~nq~~~~~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~  621 (780)
T 2z6g_A          542 AHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARDIHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELA  621 (780)
T ss_dssp             HHHHHHHTTC------CCSTTCCHHHHHHHHHHHHHHHTTSHHHHHHHHHTCCHHHHHHGGGCSCHHHHHHHHHHHHHHH
T ss_pred             cchhHHHHHhhccccchhhcccChHHHHHHHHHHHHHHhcChhhHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence            33                      45677899999999999999999999999999999999999999999999999999


Q ss_pred             CCCcchHHHHHhhCCchHHhHHHHHHHhhhchhHHHHHHHHHhHhhhccCCC
Q 044999          409 EDPLQHERISEAIGIPSFQSMQSRLTRIRASDDLMARSMRRMSIEQLTWDPD  460 (461)
Q Consensus       409 ~~~~~~~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~  460 (461)
                      .+++.+..+.+.++++.+.++++      + .+..+++.+..++..+..+++
T Consensus       622 ~~~~~~~~i~~~g~i~~L~~Ll~------~-~~~~Vr~~A~~aL~~l~~~~~  666 (780)
T 2z6g_A          622 QDKEAAEAIEAEGATAPLTELLH------S-RNEGVATYAAAVLFRMSEDKP  666 (780)
T ss_dssp             TSHHHHHHHHHTTCHHHHHHGGG------C-SCHHHHHHHHHHHHHHHTTSC
T ss_pred             cCHHHHHHHHHCCCHHHHHHHHc------C-CCHHHHHHHHHHHHHHHcCCh
Confidence            88888889999888888776654      3 477899999999999887664

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B

Probab=100.00  E-value=1.7e-37  Score=305.78  Aligned_cols=392  Identities=15%  Similarity=0.154  Sum_probs=336.3

Q ss_pred             hHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHhcCC-CCCHHHHHHHHHHHHHHhcc
Q 044999           49 TIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQADGALATEIGQSGVINSVLRLFP-QSDDSFRTVLVKCLRVFVTF  127 (461)
Q Consensus        49 ~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~ll~-~~~~~~~~~~~~~l~~l~~~  127 (461)
                      .++.+++.+.+      +|++.|..|+..+.++.+.+.....+.+.+.|++|.|+++|+ +.++.++..++++|.+++..
T Consensus        77 ~l~~lv~~l~s------~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~  150 (529)
T 3tpo_A           77 SVEDIVKGINS------NNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASG  150 (529)
T ss_dssp             CHHHHHHHHTS------SCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHhcC------CCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcC
Confidence            68899999986      678899999999999876434455678889999999999997 45688999999999999999


Q ss_pred             ChhhHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHhh-CChHHHHHHHhcCCHHHHHHHHcCCC-----HHHHHHHH
Q 044999          128 GNENRVIVARNGGLEIVIDLLNSCNDGTRRYLLEILSALA-LLREVRRVLICLGGLRYLVEAVSFGS-----MVSRERAC  201 (461)
Q Consensus       128 ~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~-~~~~~~~~~~~~~~l~~l~~~l~~~~-----~~~~~~a~  201 (461)
                      +++.+..+.+.|+++.|+.++.++++.+++.|+++|++++ .+++.+..+.+.|+++.|+.++...+     ..+...++
T Consensus       151 ~~~~~~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~  230 (529)
T 3tpo_A          151 TSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLT  230 (529)
T ss_dssp             CHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHH
T ss_pred             CHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHH
Confidence            9899999999999999999999999999999999999999 56888999999999999999998653     35788999


Q ss_pred             HHHHHhhcCchh-HHHHHhcCChHHHHHhcccCCHHHHHHHHHHHHHHhcC-ccchhhhhhcCCHHHHHHHhCCCChhHH
Q 044999          202 QAIGLLAVTGRA-RRLLVELGVIPGLVELFHIGDWTTKLVAGNTLGVVAAH-VEYITPVAEAGAIPLYAELLQGPDSTGK  279 (461)
Q Consensus       202 ~~L~~l~~~~~~-~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~g~i~~L~~ll~~~~~~~~  279 (461)
                      +++.+++.+... .......++++.|+.++.+++++++..++++|.+++.+ ++....+...|+++.|+.++.+.++.++
T Consensus       231 ~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~  310 (529)
T 3tpo_A          231 WTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIV  310 (529)
T ss_dssp             HHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHH
T ss_pred             HHHHHHHhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHH
Confidence            999999988766 44445567899999999999999999999999999998 4555667788999999999999999999


Q ss_pred             HHHHHHHHHhccCccc-HHHHH-----HHHHHHhccCCHHHHHHHHHHHHHhhCC-CCchhHHhhcCCHHHHHHhhcCCC
Q 044999          280 EISEDVFCILAVSEAN-ANAIA-----EHLVRILREGDNEANAAAADVLWDLAGY-KHSVPVIRNSGAIPILVNLLRGEN  352 (461)
Q Consensus       280 ~~a~~~L~~l~~~~~~-~~~i~-----~~l~~ll~~~~~~~~~~a~~~L~~l~~~-~~~~~~l~~~g~i~~L~~ll~~~~  352 (461)
                      ..++.+|.|++..++. ...+.     +.|+.++.++++.++..|+++|+|++.+ +.....+.+.|+++.|+.++.+++
T Consensus       311 ~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~  390 (529)
T 3tpo_A          311 TPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKAD  390 (529)
T ss_dssp             HHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSC
T ss_pred             HHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCC
Confidence            9999999999765544 44444     8999999999999999999999999964 566777889999999999999999


Q ss_pred             HHHHHHHHHHHHHhcC--ChhhHHHHHhCCChHHHHHhccCCCHHHHHHHHHHHHHhcCCC-------cchHHHHHhhCC
Q 044999          353 DEVREKVSGAIAQLSY--NEADRVALADAGAVPIMIELLHDESEELRDNAAESLINFSEDP-------LQHERISEAIGI  423 (461)
Q Consensus       353 ~~v~~~a~~~L~~l~~--~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~-------~~~~~l~~~~~~  423 (461)
                      ..++..|+++|+|++.  +++....+++.|+++.|++++.+.+++++..++++|.|+....       .....+.++||+
T Consensus       391 ~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl  470 (529)
T 3tpo_A          391 FKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGL  470 (529)
T ss_dssp             HHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccChHHHHHHHHHCCcH
Confidence            9999999999999997  6777888999999999999999999999999999999986421       123456778888


Q ss_pred             chHHhHHHHHHHhhhchhHHHHHHHHHhHh
Q 044999          424 PSFQSMQSRLTRIRASDDLMARSMRRMSIE  453 (461)
Q Consensus       424 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~  453 (461)
                      ..++.++.      . .++.+.+.|..+++
T Consensus       471 ~~ie~Lq~------~-~n~~i~~~A~~iie  493 (529)
T 3tpo_A          471 DKIEALQR------H-ENESVYKASLNLIE  493 (529)
T ss_dssp             HHHTGGGG------C-SSHHHHHHHHHHHH
T ss_pred             HHHHHHHc------C-CCHHHHHHHHHHHH
Confidence            77776654      2 35556666655554

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B

Probab=100.00  E-value=3.8e-37  Score=303.26  Aligned_cols=395  Identities=20%  Similarity=0.253  Sum_probs=343.7

Q ss_pred             HHhHHHHHHHhhcCCHHHHHHHHHHHHhhc---CCCchhHHHh--hHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHh
Q 044999            9 EEAFNRFEQAVVSGSEALQVKALTKLARVS---KFAPQDILAA--TIPILARLLGENNFSGNLTRSIQQAAAYCLKQIAS   83 (461)
Q Consensus         9 ~~~~~~l~~ll~~~~~~~~~~a~~~l~~la---~~~~~~~l~~--~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~   83 (461)
                      ...++.+++.+.|+|+..+..|+..+..+.   +..+.+.+.+  +||.|+++|..     ++++.+|..|+++|.+++.
T Consensus        75 ~~~l~~lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~-----~~~~~~q~~Aa~aL~nia~  149 (529)
T 3tpo_A           75 NWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGK-----TDCSPIQFESAWALTNIAS  149 (529)
T ss_dssp             SCCHHHHHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTC-----TTCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcC-----CCCHHHHHHHHHHHHHHHc
Confidence            346789999999999999999999998865   3334455555  99999999984     3568899999999999998


Q ss_pred             cCCchhHHHHHhcCCHHHHHhcCCCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhcCCCh-----HHHHH
Q 044999           84 QADGALATEIGQSGVINSVLRLFPQSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLNSCND-----GTRRY  158 (461)
Q Consensus        84 ~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~-----~~~~~  158 (461)
                      + +......+.+.|+++.|++++.++++.++..++++|.+++.++++++..+.+.|+++.|+.++...+.     .....
T Consensus       150 ~-~~~~~~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~  228 (529)
T 3tpo_A          150 G-TSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRN  228 (529)
T ss_dssp             S-CHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHH
T ss_pred             C-CHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHH
Confidence            6 67777889999999999999999999999999999999999999999999999999999999987653     46788


Q ss_pred             HHHHHHHhhCChHH-HHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCchh-HHHHHhcCChHHHHHhcccCCHH
Q 044999          159 LLEILSALALLREV-RRVLICLGGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRA-RRLLVELGVIPGLVELFHIGDWT  236 (461)
Q Consensus       159 a~~~L~~l~~~~~~-~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~-~~~~~~~~~i~~L~~ll~~~~~~  236 (461)
                      +++++.+++.+... .......++++.|+.++.+++++++..++++|.+++...+. ...+.+.|+++.|+.++.++++.
T Consensus       229 a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~  308 (529)
T 3tpo_A          229 LTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELP  308 (529)
T ss_dssp             HHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHH
T ss_pred             HHHHHHHHHhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChh
Confidence            99999999965433 33334467899999999999999999999999999998877 67788899999999999999999


Q ss_pred             HHHHHHHHHHHHhcC-ccchhhhhhcCCHHHHHHHhCCCChhHHHHHHHHHHHhccCccc-HHHHH-----HHHHHHhcc
Q 044999          237 TKLVAGNTLGVVAAH-VEYITPVAEAGAIPLYAELLQGPDSTGKEISEDVFCILAVSEAN-ANAIA-----EHLVRILRE  309 (461)
Q Consensus       237 ~~~~a~~~L~~l~~~-~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~-~~~i~-----~~l~~ll~~  309 (461)
                      ++..++.+|+|++.. +..+..+.+.|+++.|+.++.++++.++..|+++|.|++.+... ...+.     +.++.++.+
T Consensus       309 v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~  388 (529)
T 3tpo_A          309 IVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSK  388 (529)
T ss_dssp             HHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcC
Confidence            999999999999887 67778888999999999999999999999999999999876554 33333     999999999


Q ss_pred             CCHHHHHHHHHHHHHhhC--CCCchhHHhhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcC-------ChhhHHHHHhCC
Q 044999          310 GDNEANAAAADVLWDLAG--YKHSVPVIRNSGAIPILVNLLRGENDEVREKVSGAIAQLSY-------NEADRVALADAG  380 (461)
Q Consensus       310 ~~~~~~~~a~~~L~~l~~--~~~~~~~l~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~-------~~~~~~~~~~~~  380 (461)
                      ++++++..|+++|+|++.  .++....+++.|+++.|+.+|.++++.++..++.+|.++..       ....+..+.+.|
T Consensus       389 ~~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~g  468 (529)
T 3tpo_A          389 ADFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECG  468 (529)
T ss_dssp             SCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTT
T ss_pred             CCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccChHHHHHHHHHCC
Confidence            999999999999999995  45667789999999999999999999999999999999874       123345677899


Q ss_pred             ChHHHHHhccCCCHHHHHHHHHHHHHhcC
Q 044999          381 AVPIMIELLHDESEELRDNAAESLINFSE  409 (461)
Q Consensus       381 ~i~~L~~ll~~~~~~~~~~a~~~L~~l~~  409 (461)
                      +++.|..+..+++.++...|..+|-....
T Consensus       469 gl~~ie~Lq~~~n~~i~~~A~~iie~yf~  497 (529)
T 3tpo_A          469 GLDKIEALQRHENESVYKASLNLIEKYFS  497 (529)
T ss_dssp             CHHHHTGGGGCSSHHHHHHHHHHHHHHC-
T ss_pred             cHHHHHHHHcCCCHHHHHHHHHHHHHHCC
Confidence            99999999999999999999999987653

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A

Probab=100.00  E-value=5.9e-37  Score=296.36  Aligned_cols=364  Identities=16%  Similarity=0.163  Sum_probs=314.0

Q ss_pred             hHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHhcCCCCCHHHHHHHHHHHHHHhcc-
Q 044999           49 TIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQADGALATEIGQSGVINSVLRLFPQSDDSFRTVLVKCLRVFVTF-  127 (461)
Q Consensus        49 ~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~l~~~-  127 (461)
                      .|+.++++|++      +++++|..|+.+|.+++.. ++.++..+.+.|+++.|+++|+++++.++..++++|.+++.. 
T Consensus        49 ~i~~LV~~L~s------~~~~~q~~Aa~~L~~La~~-~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~  121 (584)
T 3l6x_A           49 ELPEVIAMLGF------RLDAVKSNAAAYLQHLCYR-NDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGR  121 (584)
T ss_dssp             CHHHHHHHTTC------SCHHHHHHHHHHHHHHHTT-CHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSS
T ss_pred             cHHHHHHHHCC------CCHHHHHHHHHHHHHHHcC-ChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccC
Confidence            89999999986      4678999999999999975 788999999999999999999999999999999999999985 


Q ss_pred             ChhhHHHHHHcCCHHHHHHHhcC-CChHHHHHHHHHHHHhhCChHHHHHHHhcCCHHHHHHHHc----------------
Q 044999          128 GNENRVIVARNGGLEIVIDLLNS-CNDGTRRYLLEILSALALLREVRRVLICLGGLRYLVEAVS----------------  190 (461)
Q Consensus       128 ~~~~~~~~~~~g~i~~L~~ll~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~~l~----------------  190 (461)
                      +.+++..+.+.|+++.|+++|++ .+..+++.|+.+|++++.+++++..+++ ++++.|++++.                
T Consensus       122 ~~~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~I~~-~alp~Lv~LL~~p~sg~~~~~~~~~k~  200 (584)
T 3l6x_A          122 DQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVD-HALHALTDEVIIPHSGWEREPNEDCKP  200 (584)
T ss_dssp             CHHHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHHHHH-HTHHHHHHHTHHHHHCCC---------
T ss_pred             CHHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhHHHHh-ccHHHHHHHHhcccccccccccccccc
Confidence            68999999999999999999997 5778999999999999999999999886 57999999771                


Q ss_pred             --CCCHHHHHHHHHHHHHhhcCchh-HHHHHhc-CChHHHHHhccc------CCHHHHHHHHHHHHHHhcCc--c-----
Q 044999          191 --FGSMVSRERACQAIGLLAVTGRA-RRLLVEL-GVIPGLVELFHI------GDWTTKLVAGNTLGVVAAHV--E-----  253 (461)
Q Consensus       191 --~~~~~~~~~a~~~L~~l~~~~~~-~~~~~~~-~~i~~L~~ll~~------~~~~~~~~a~~~L~~l~~~~--~-----  253 (461)
                        ..+++++..|.++|.||+...+. +..+.+. |+++.|+.++++      .+...++.|+++|+||+...  +     
T Consensus       201 ~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~  280 (584)
T 3l6x_A          201 RHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAE  280 (584)
T ss_dssp             -CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCC
T ss_pred             cccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchh
Confidence              22579999999999999998876 8888885 556799999874      46789999999999999751  0     


Q ss_pred             -------------------chhhhhhcCCHHHHHHHhC-CCChhHHHHHHHHHHHhccCcc-----cHHHHH-----HHH
Q 044999          254 -------------------YITPVAEAGAIPLYAELLQ-GPDSTGKEISEDVFCILAVSEA-----NANAIA-----EHL  303 (461)
Q Consensus       254 -------------------~~~~~~~~g~i~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~~-----~~~~i~-----~~l  303 (461)
                                         ....+...++++.|+.+++ +.++.+++.|+++|.||+....     .+..+.     +.|
T Consensus       281 ~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~L  360 (584)
T 3l6x_A          281 RYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAI  360 (584)
T ss_dssp             C--------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHH
T ss_pred             hhhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHH
Confidence                               1112233355778899995 5589999999999999976532     222221     999


Q ss_pred             HHHhccCCHHHHHHHHHHHHHhhCCCCchhHHhhcCCHHHHHHhhcCC--------CHHHHHHHHHHHHHhcC-ChhhHH
Q 044999          304 VRILREGDNEANAAAADVLWDLAGYKHSVPVIRNSGAIPILVNLLRGE--------NDEVREKVSGAIAQLSY-NEADRV  374 (461)
Q Consensus       304 ~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~ll~~~--------~~~v~~~a~~~L~~l~~-~~~~~~  374 (461)
                      +++|.++++.++..|+++|+||+.++.++..+ ..|+++.|+++|.++        +.++...++++|.|++. +++++.
T Consensus       361 v~LL~s~~~~v~~~A~~aL~nLs~~~~~~~~I-~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~~~  439 (584)
T 3l6x_A          361 ADLLTNEHERVVKAASGALRNLAVDARNKELI-GKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAK  439 (584)
T ss_dssp             HHGGGCSCHHHHHHHHHHHHHHHTTCSCHHHH-HHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHcCCCHHHHHHHHHHHHHHhCChhHHHHH-HhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCHHHHH
Confidence            99999999999999999999999998888766 679999999999876        46789999999999987 899999


Q ss_pred             HHHhCCChHHHHHhccCC--CHHHHHHHHHHHHHhcCCCcchHHHHHhh
Q 044999          375 ALADAGAVPIMIELLHDE--SEELRDNAAESLINFSEDPLQHERISEAI  421 (461)
Q Consensus       375 ~~~~~~~i~~L~~ll~~~--~~~~~~~a~~~L~~l~~~~~~~~~l~~~~  421 (461)
                      .+.+.|+++.|+++++++  .+.+++.|+++|+++..+.+.+..+.+.|
T Consensus       440 ~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~~~elr~~~kk~G  488 (584)
T 3l6x_A          440 KLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWGYKELRKPLEKEG  488 (584)
T ss_dssp             HHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHTSHHHHHHHHTTT
T ss_pred             HHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHHcCHHHHHHHHHcC
Confidence            999999999999999875  89999999999999999998887777654

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A

Probab=100.00  E-value=1.4e-36  Score=300.34  Aligned_cols=399  Identities=18%  Similarity=0.176  Sum_probs=349.5

Q ss_pred             HHhHHHHHHHhhcCCHHHHHHHHHHHHhhc--CC-CchhHHHh--hHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHh
Q 044999            9 EEAFNRFEQAVVSGSEALQVKALTKLARVS--KF-APQDILAA--TIPILARLLGENNFSGNLTRSIQQAAAYCLKQIAS   83 (461)
Q Consensus         9 ~~~~~~l~~ll~~~~~~~~~~a~~~l~~la--~~-~~~~~l~~--~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~   83 (461)
                      .+.++.++..+.++++.++..|+..|.+++  .. .....+.+  +++.|+++|.+    + +++.++..|+++|.+++.
T Consensus        73 ~~~l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~----~-~~~~v~~~A~~~L~~l~~  147 (528)
T 4b8j_A           73 LESLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTR----E-DFPQLQFEAAWALTNIAS  147 (528)
T ss_dssp             --CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTC----T-TCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCC----C-CCHHHHHHHHHHHHHHhC
Confidence            456899999999999999999999999996  32 45555555  99999999986    3 347889999999999999


Q ss_pred             cCCchhHHHHHhcCCHHHHHhcCCCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHh-cCCChHHHHHHHHH
Q 044999           84 QADGALATEIGQSGVINSVLRLFPQSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLL-NSCNDGTRRYLLEI  162 (461)
Q Consensus        84 ~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll-~~~~~~~~~~a~~~  162 (461)
                      + +...+..+.+.|+++.|+++|+++++.++..+++++.+++..++.++..+.+.|+++.|+.++ .+.++.++..++++
T Consensus       148 ~-~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~  226 (528)
T 4b8j_A          148 G-TSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWT  226 (528)
T ss_dssp             S-CHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHH
T ss_pred             C-CHHHHHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHH
Confidence            5 678888999999999999999999999999999999999988888999999999999999999 67788999999999


Q ss_pred             HHHhhCChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCchh-HHHHHhcCChHHHHHhcccCCHHHHHHH
Q 044999          163 LSALALLREVRRVLICLGGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRA-RRLLVELGVIPGLVELFHIGDWTTKLVA  241 (461)
Q Consensus       163 L~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~-~~~~~~~~~i~~L~~ll~~~~~~~~~~a  241 (461)
                      |.+++...+........++++.|+.++.+.++.++..++++|++++...+. ...+.+.|+++.|+.++.++++.++..|
T Consensus       227 L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a  306 (528)
T 4b8j_A          227 LSNFCRGKPQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPA  306 (528)
T ss_dssp             HHHHHCSSSCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHH
T ss_pred             HHHHHcCCCCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHH
Confidence            999996544444455689999999999999999999999999999988877 5778889999999999999999999999


Q ss_pred             HHHHHHHhcC-ccchhhhhhcCCHHHHHHHhCCC-ChhHHHHHHHHHHHhccCcc-cHHHHH-----HHHHHHhccCCHH
Q 044999          242 GNTLGVVAAH-VEYITPVAEAGAIPLYAELLQGP-DSTGKEISEDVFCILAVSEA-NANAIA-----EHLVRILREGDNE  313 (461)
Q Consensus       242 ~~~L~~l~~~-~~~~~~~~~~g~i~~L~~ll~~~-~~~~~~~a~~~L~~l~~~~~-~~~~i~-----~~l~~ll~~~~~~  313 (461)
                      +++|++++.. +.....+.+.|+++.|+.++.+. ++.++..|+++|.|++.... ....+.     +.|+.+|.++++.
T Consensus       307 ~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~  386 (528)
T 4b8j_A          307 LRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTAEFD  386 (528)
T ss_dssp             HHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHHSCHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhcCCHH
Confidence            9999999986 66777788899999999999988 99999999999999986443 333333     9999999999999


Q ss_pred             HHHHHHHHHHHhhCC--CCchhHHhhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcC-Chh-----------hHHHHHhC
Q 044999          314 ANAAAADVLWDLAGY--KHSVPVIRNSGAIPILVNLLRGENDEVREKVSGAIAQLSY-NEA-----------DRVALADA  379 (461)
Q Consensus       314 ~~~~a~~~L~~l~~~--~~~~~~l~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~-~~~-----------~~~~~~~~  379 (461)
                      ++..|+++|.+++..  ++....+.+.|+++.|+.++.++++.++..++.+|.++.. .+.           ....+.+.
T Consensus       387 v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~  466 (528)
T 4b8j_A          387 IKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENILKVGETDKTLAAGDVNVFSQMIDEA  466 (528)
T ss_dssp             HHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHC
Confidence            999999999999954  6778888899999999999999999999999999999987 332           46777899


Q ss_pred             CChHHHHHhccCCCHHHHHHHHHHHHHhcCCCcc
Q 044999          380 GAVPIMIELLHDESEELRDNAAESLINFSEDPLQ  413 (461)
Q Consensus       380 ~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~  413 (461)
                      |+++.+..+.++.+++++..|..++.++....++
T Consensus       467 ~~~~~l~~L~~~~~~~v~~~a~~il~~~~~~e~~  500 (528)
T 4b8j_A          467 EGLEKIENLQSHDNNEIYEKAVKILEAYWMDEED  500 (528)
T ss_dssp             THHHHHHHGGGCSSHHHHHHHHHHHHHHCC----
T ss_pred             CcHHHHHHHHcCCCHHHHHHHHHHHHHHCCCccc
Confidence            9999999999999999999999999999766543

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A

Probab=100.00  E-value=3.5e-36  Score=297.48  Aligned_cols=394  Identities=19%  Similarity=0.210  Sum_probs=340.3

Q ss_pred             hHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHhcCCCCC-HHHHHHHHHHHHHHhcc
Q 044999           49 TIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQADGALATEIGQSGVINSVLRLFPQSD-DSFRTVLVKCLRVFVTF  127 (461)
Q Consensus        49 ~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~ll~~~~-~~~~~~~~~~l~~l~~~  127 (461)
                      .++.+++.|.+      +++..|..|+.+|.+++..+.......+.+.|+++.|+++|++++ +.++..+++++.+++..
T Consensus        75 ~l~~lv~~L~s------~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~  148 (528)
T 4b8j_A           75 SLPAMIGGVYS------DDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASG  148 (528)
T ss_dssp             CHHHHHHHHTS------SCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHcC------CCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCC
Confidence            79999999986      467888899999999987533366778889999999999999887 99999999999999988


Q ss_pred             ChhhHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHhh-CChHHHHHHHhcCCHHHHHHHH-cCCCHHHHHHHHHHHH
Q 044999          128 GNENRVIVARNGGLEIVIDLLNSCNDGTRRYLLEILSALA-LLREVRRVLICLGGLRYLVEAV-SFGSMVSRERACQAIG  205 (461)
Q Consensus       128 ~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~-~~~~~~~~~~~~~~l~~l~~~l-~~~~~~~~~~a~~~L~  205 (461)
                      +++.+..+.+.|+++.|+.++.++++.++..|+++|.+++ ..+..+..+.+.|+++.|+.++ .+.++.++..++++|.
T Consensus       149 ~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~  228 (528)
T 4b8j_A          149 TSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLS  228 (528)
T ss_dssp             CHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHH
T ss_pred             CHHHHHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence            8899999999999999999999999999999999999999 5577888999999999999999 5678999999999999


Q ss_pred             HhhcCchhHHHHHhcCChHHHHHhcccCCHHHHHHHHHHHHHHhcCcc-chhhhhhcCCHHHHHHHhCCCChhHHHHHHH
Q 044999          206 LLAVTGRARRLLVELGVIPGLVELFHIGDWTTKLVAGNTLGVVAAHVE-YITPVAEAGAIPLYAELLQGPDSTGKEISED  284 (461)
Q Consensus       206 ~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~-~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~  284 (461)
                      +++...+........++++.|+.++.++++.++..++++|.+++...+ ....+.+.|+++.|+.++.+.++.++..|+.
T Consensus       229 ~L~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~  308 (528)
T 4b8j_A          229 NFCRGKPQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALR  308 (528)
T ss_dssp             HHHCSSSCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHH
T ss_pred             HHHcCCCCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHH
Confidence            999987654445568999999999999999999999999999998744 4467778899999999999999999999999


Q ss_pred             HHHHhccCccc-HHHHH-----HHHHHHhccC-CHHHHHHHHHHHHHhhCC-CCchhHHhhcCCHHHHHHhhcCCCHHHH
Q 044999          285 VFCILAVSEAN-ANAIA-----EHLVRILREG-DNEANAAAADVLWDLAGY-KHSVPVIRNSGAIPILVNLLRGENDEVR  356 (461)
Q Consensus       285 ~L~~l~~~~~~-~~~i~-----~~l~~ll~~~-~~~~~~~a~~~L~~l~~~-~~~~~~l~~~g~i~~L~~ll~~~~~~v~  356 (461)
                      +|.|++...+. ...+.     +.|+.+|.++ ++.++..|+++|.+++.. ++....+.+.|+++.|+.++.++++.++
T Consensus       309 ~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~  388 (528)
T 4b8j_A          309 TVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIK  388 (528)
T ss_dssp             HHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhcCCHHHH
Confidence            99999875543 33333     9999999998 999999999999999964 4566778889999999999999999999


Q ss_pred             HHHHHHHHHhcC--ChhhHHHHHhCCChHHHHHhccCCCHHHHHHHHHHHHHhcCCCcc------------hHHHHHhhC
Q 044999          357 EKVSGAIAQLSY--NEADRVALADAGAVPIMIELLHDESEELRDNAAESLINFSEDPLQ------------HERISEAIG  422 (461)
Q Consensus       357 ~~a~~~L~~l~~--~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~------------~~~l~~~~~  422 (461)
                      ..|+++|.+++.  +++....+.+.|+++.|+.++.+++++++..++++|.++....+.            ...+.+.++
T Consensus       389 ~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~  468 (528)
T 4b8j_A          389 KEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENILKVGETDKTLAAGDVNVFSQMIDEAEG  468 (528)
T ss_dssp             HHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHTTH
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHCCc
Confidence            999999999998  478888999999999999999999999999999999999865432            445556555


Q ss_pred             CchHHhHHHHHHHhhhchhHHHHHHHHHhHhhh
Q 044999          423 IPSFQSMQSRLTRIRASDDLMARSMRRMSIEQL  455 (461)
Q Consensus       423 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~  455 (461)
                      ...+..+.       ...++.+++.+..+++.+
T Consensus       469 ~~~l~~L~-------~~~~~~v~~~a~~il~~~  494 (528)
T 4b8j_A          469 LEKIENLQ-------SHDNNEIYEKAVKILEAY  494 (528)
T ss_dssp             HHHHHHGG-------GCSSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHH-------cCCCHHHHHHHHHHHHHH
Confidence            55554443       223566777777777654

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A

Probab=100.00  E-value=2e-35  Score=292.02  Aligned_cols=399  Identities=17%  Similarity=0.198  Sum_probs=349.2

Q ss_pred             HHHhHHHHHHHhhcCCHHHHHHHHHHHHhhc-C--CCchhHHHh--hHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHH
Q 044999            8 WEEAFNRFEQAVVSGSEALQVKALTKLARVS-K--FAPQDILAA--TIPILARLLGENNFSGNLTRSIQQAAAYCLKQIA   82 (461)
Q Consensus         8 ~~~~~~~l~~ll~~~~~~~~~~a~~~l~~la-~--~~~~~~l~~--~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~   82 (461)
                      +...++.++..+.++++.++..|+..|.++. .  ......+.+  +++.|+++|.+    + +++.++..|+++|.+++
T Consensus        85 ~~~~i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~----~-~~~~v~~~A~~~L~~l~  159 (530)
T 1wa5_B           85 LQQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRE----N-QPEMLQLEAAWALTNIA  159 (530)
T ss_dssp             --CCHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTST----T-SCHHHHHHHHHHHHHHT
T ss_pred             hHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCC----C-CCHHHHHHHHHHHHHHh
Confidence            5567899999999999999999999999997 3  344445554  99999999986    3 36789999999999999


Q ss_pred             hcCCchhHHHHHhcCCHHHHHhcCCCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhcCCChHHHHHHHHH
Q 044999           83 SQADGALATEIGQSGVINSVLRLFPQSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLNSCNDGTRRYLLEI  162 (461)
Q Consensus        83 ~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~  162 (461)
                      .. .......+.+.|+++.|+++|+++++.++..+++++.+++..+++.+..+...|+++.|+.++.+.++.++..|+++
T Consensus       160 ~~-~~~~~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~  238 (530)
T 1wa5_B          160 SG-TSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWT  238 (530)
T ss_dssp             TS-CHHHHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHH
T ss_pred             CC-CHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHH
Confidence            85 56777888899999999999999999999999999999998888899999999999999999999999999999999


Q ss_pred             HHHhhCCh-HHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCchh-HHHHHhcCChHHHHHhcccCCHHHHHH
Q 044999          163 LSALALLR-EVRRVLICLGGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRA-RRLLVELGVIPGLVELFHIGDWTTKLV  240 (461)
Q Consensus       163 L~~l~~~~-~~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~-~~~~~~~~~i~~L~~ll~~~~~~~~~~  240 (461)
                      |.+++.+. +........++++.|+.++.++++.++..++++|.+++...+. ...+.+.|+++.|+.++.++++.++..
T Consensus       239 L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~  318 (530)
T 1wa5_B          239 LSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTP  318 (530)
T ss_dssp             HHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHH
T ss_pred             HHHHhCCCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHH
Confidence            99999554 4444556688999999999999999999999999999988765 777888999999999999999999999


Q ss_pred             HHHHHHHHhcC-ccchhhhhhcCCHHHHHHHhCCCChhHHHHHHHHHHHhccCc-ccHHHHH-----HHHHHHhccCCHH
Q 044999          241 AGNTLGVVAAH-VEYITPVAEAGAIPLYAELLQGPDSTGKEISEDVFCILAVSE-ANANAIA-----EHLVRILREGDNE  313 (461)
Q Consensus       241 a~~~L~~l~~~-~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~-~~~~~i~-----~~l~~ll~~~~~~  313 (461)
                      |+++|++++.. +.....+.+.|+++.|+.++.++++.++..|+++|.+++... +....+.     +.|+++|.++++.
T Consensus       319 a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~  398 (530)
T 1wa5_B          319 ALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYK  398 (530)
T ss_dssp             HHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHH
Confidence            99999999987 556667778899999999999999999999999999998643 3333333     8999999999999


Q ss_pred             HHHHHHHHHHHhhCC--C--CchhHHhhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcC-Chh-----------hHHHHH
Q 044999          314 ANAAAADVLWDLAGY--K--HSVPVIRNSGAIPILVNLLRGENDEVREKVSGAIAQLSY-NEA-----------DRVALA  377 (461)
Q Consensus       314 ~~~~a~~~L~~l~~~--~--~~~~~l~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~-~~~-----------~~~~~~  377 (461)
                      ++..|+++|.+++..  +  +....+.+.|+++.|+.++.+.++.++..++++|.++.. .+.           ....+.
T Consensus       399 v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~l~  478 (530)
T 1wa5_B          399 TKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIE  478 (530)
T ss_dssp             HHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHH
Confidence            999999999999953  4  577788899999999999999999999999999999988 322           346688


Q ss_pred             hCCChHHHHHhccCCCHHHHHHHHHHHHHhcCCCc
Q 044999          378 DAGAVPIMIELLHDESEELRDNAAESLINFSEDPL  412 (461)
Q Consensus       378 ~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~  412 (461)
                      +.|+++.|..+..++++++++.|..+|.++....+
T Consensus       479 ~~g~~~~L~~L~~~~~~~v~~~a~~il~~~~~~~~  513 (530)
T 1wa5_B          479 KAGGMEKIFNCQQNENDKIYEKAYKIIETYFGEEE  513 (530)
T ss_dssp             HTTHHHHHHGGGGCSCHHHHHHHHHHHHHHSSSCC
T ss_pred             HcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCccc
Confidence            99999999999999999999999999999976654

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A

Probab=100.00  E-value=1.7e-35  Score=293.11  Aligned_cols=392  Identities=18%  Similarity=0.244  Sum_probs=338.7

Q ss_pred             HhHHHHHHHhhcC-CHHHHHHHHHHHHhhc-CCCchhHHHh--hHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHhcC
Q 044999           10 EAFNRFEQAVVSG-SEALQVKALTKLARVS-KFAPQDILAA--TIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQA   85 (461)
Q Consensus        10 ~~~~~l~~ll~~~-~~~~~~~a~~~l~~la-~~~~~~~l~~--~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~   85 (461)
                      +.++.+++++.++ ++.++..|+.+|.+++ ++.++..+.+  +++.|+++|++      +++.+|..|+.+|.+++.+ 
T Consensus        59 ~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~g~i~~L~~lL~~------~~~~v~~~a~~~L~~l~~~-  131 (529)
T 1jdh_A           59 QMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGS------PVDSVLFYAITTLHNLLLH-  131 (529)
T ss_dssp             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHTTC------SCHHHHHHHHHHHHHHHHH-
T ss_pred             chHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCchhHHHHHHcCCHHHHHHHHcC------CCHHHHHHHHHHHHHHhcC-
Confidence            6789999999765 8999999999999999 7667777777  99999999986      4578999999999999995 


Q ss_pred             CchhHHHHHhcCCHHHHHhcCCCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhcCCCh-HHHHHHHHHHH
Q 044999           86 DGALATEIGQSGVINSVLRLFPQSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLNSCND-GTRRYLLEILS  164 (461)
Q Consensus        86 ~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~-~~~~~a~~~L~  164 (461)
                      ++..+..+.+.|+++.|+++++++++.++..++.++.+++..+++++..+.+.|+++.|+.++++.++ ..+..++.+|.
T Consensus       132 ~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~  211 (529)
T 1jdh_A          132 QEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLK  211 (529)
T ss_dssp             CTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred             CcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHH
Confidence            56678888899999999999999999999999999999998888999999999999999999987654 56677888999


Q ss_pred             HhhCChHHHHHHHhcCCHHHHHHH---------------------------------------HcCCCHHHHHHHHHHHH
Q 044999          165 ALALLREVRRVLICLGGLRYLVEA---------------------------------------VSFGSMVSRERACQAIG  205 (461)
Q Consensus       165 ~l~~~~~~~~~~~~~~~l~~l~~~---------------------------------------l~~~~~~~~~~a~~~L~  205 (461)
                      +++.+++.+..+.+.|+++.++.+                                       +.+++++++..++++|+
T Consensus       212 ~l~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~  291 (529)
T 1jdh_A          212 VLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILS  291 (529)
T ss_dssp             HHTTSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred             HHhcCcccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCChhhHHHHhHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence            999888888888877766655544                                       44556777888888888


Q ss_pred             HhhcCch-hHHHHHhcCChHHHHHhccc--CCHHHHHHHHHHHHHHhcC-cc---chhhhhhcCCHHHHHHHhCCCC-hh
Q 044999          206 LLAVTGR-ARRLLVELGVIPGLVELFHI--GDWTTKLVAGNTLGVVAAH-VE---YITPVAEAGAIPLYAELLQGPD-ST  277 (461)
Q Consensus       206 ~l~~~~~-~~~~~~~~~~i~~L~~ll~~--~~~~~~~~a~~~L~~l~~~-~~---~~~~~~~~g~i~~L~~ll~~~~-~~  277 (461)
                      +++..++ .+..+.+.|+++.|+.++.+  .++.++..++.+|+|++.. ++   .+..+.+.|+++.|+.++.+++ +.
T Consensus       292 ~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~  371 (529)
T 1jdh_A          292 NLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWP  371 (529)
T ss_dssp             HHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHH
T ss_pred             HHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchH
Confidence            8887765 48888899999999999985  3479999999999999886 33   4678888999999999999886 59


Q ss_pred             HHHHHHHHHHHhccCcccHHHHH-----HHHHHHhccCCHHHHH----------------------HHHHHHHHhhCCCC
Q 044999          278 GKEISEDVFCILAVSEANANAIA-----EHLVRILREGDNEANA----------------------AAADVLWDLAGYKH  330 (461)
Q Consensus       278 ~~~~a~~~L~~l~~~~~~~~~i~-----~~l~~ll~~~~~~~~~----------------------~a~~~L~~l~~~~~  330 (461)
                      ++..++++|.|++.+++.+..+.     +.|++++++++++++.                      .++.+|.+++..++
T Consensus       372 v~~~a~~~l~nl~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~n~~~~~~~~~~~i~~~~~~al~~L~~~~~  451 (529)
T 1jdh_A          372 LIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVH  451 (529)
T ss_dssp             HHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHHHHHHHC-----------CBTTBCHHHHHHHHHHHHHHHTTSHH
T ss_pred             HHHHHHHHHHHHhcChhhhHHHHHcCCHHHHHHHHHHHhHHHHHHHhcccCchhhhccccHHHHHHHHHHHHHHHhcCch
Confidence            99999999999998888876665     8888888876666555                      55566777887778


Q ss_pred             chhHHhhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhccCCCHHHHHHHHHHHHHhc
Q 044999          331 SVPVIRNSGAIPILVNLLRGENDEVREKVSGAIAQLSYNEADRVALADAGAVPIMIELLHDESEELRDNAAESLINFS  408 (461)
Q Consensus       331 ~~~~l~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~  408 (461)
                      ++..+.+.|+++.|+.++.++++.++..++++|.+++.++..+..+.+.|+++.|.+++++++++++..|.++|.+|+
T Consensus       452 ~~~~l~~~~~v~~l~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~i~~~~~~~~L~~l~~~~~~~v~~~a~~aL~~l~  529 (529)
T 1jdh_A          452 NRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMS  529 (529)
T ss_dssp             HHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHC
T ss_pred             HHHHHhccCCccHHHHHHcCCchHHHHHHHHHHHHHhcCHHHHHHHHHcCChHHHHHHhcCCCHHHHHHHHHHHHhcC
Confidence            888899999999999999999999999999999999998888999999999999999999999999999999999874

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}

Probab=100.00  E-value=2.3e-35  Score=297.81  Aligned_cols=396  Identities=18%  Similarity=0.241  Sum_probs=347.0

Q ss_pred             HhHHHHHHHhhcC-CHHHHHHHHHHHHhhc-CCCchhHHHh--hHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHhcC
Q 044999           10 EAFNRFEQAVVSG-SEALQVKALTKLARVS-KFAPQDILAA--TIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQA   85 (461)
Q Consensus        10 ~~~~~l~~ll~~~-~~~~~~~a~~~l~~la-~~~~~~~l~~--~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~   85 (461)
                      +.++.+++.+.++ ++.++..|+.+|.+++ +..++..+.+  +++.|+++|++      +++.+|..|+.+|.+++.. 
T Consensus        56 ~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~------~~~~v~~~A~~aL~nL~~~-  128 (644)
T 2z6h_A           56 QMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGS------PVDSVLFYAITTLHNLLLH-  128 (644)
T ss_dssp             HHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSHHHHHHHHTTTHHHHHHHHTTC------SSHHHHHHHHHHHHHHHHH-
T ss_pred             ChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHHHHcCCHHHHHHHHhC------CCHHHHHHHHHHHHHHHhC-
Confidence            6789999999875 8999999999999999 7667777777  99999999986      4578999999999999986 


Q ss_pred             CchhHHHHHhcCCHHHHHhcCCCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhcCCC-hHHHHHHHHHHH
Q 044999           86 DGALATEIGQSGVINSVLRLFPQSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLNSCN-DGTRRYLLEILS  164 (461)
Q Consensus        86 ~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~-~~~~~~a~~~L~  164 (461)
                      ++..+..+.+.|+++.|+++|+++++.++..++.++.+++..+++++..+.+.|+++.|+.++++.+ ...+..++.+|.
T Consensus       129 ~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~  208 (644)
T 2z6h_A          129 QEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLK  208 (644)
T ss_dssp             STTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHH
T ss_pred             cchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHH
Confidence            5677788889999999999999999988888889999999888899999999999999999998765 477889999999


Q ss_pred             HhhCChHHHHHHHhcCCHHHHHHHH---------------------------------------cCCCHHHHHHHHHHHH
Q 044999          165 ALALLREVRRVLICLGGLRYLVEAV---------------------------------------SFGSMVSRERACQAIG  205 (461)
Q Consensus       165 ~l~~~~~~~~~~~~~~~l~~l~~~l---------------------------------------~~~~~~~~~~a~~~L~  205 (461)
                      +++.+++.+..+++.|+++.|+.++                                       .+.+++++..++++|+
T Consensus       209 nLs~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~  288 (644)
T 2z6h_A          209 VLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILS  288 (644)
T ss_dssp             HHTTCTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCTTCCSCHHHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred             HHhcCcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence            9998889999998888777766554                                       4456677778888888


Q ss_pred             HhhcCchh-HHHHHhcCChHHHHHhcccC--CHHHHHHHHHHHHHHhcC-c---cchhhhhhcCCHHHHHHHhCCCC-hh
Q 044999          206 LLAVTGRA-RRLLVELGVIPGLVELFHIG--DWTTKLVAGNTLGVVAAH-V---EYITPVAEAGAIPLYAELLQGPD-ST  277 (461)
Q Consensus       206 ~l~~~~~~-~~~~~~~~~i~~L~~ll~~~--~~~~~~~a~~~L~~l~~~-~---~~~~~~~~~g~i~~L~~ll~~~~-~~  277 (461)
                      +|+..++. +..+.+.|+++.|+.++.+.  .+.++..++.+|++++.. +   ..+..+.+.|+++.|+.++.+.+ +.
T Consensus       289 ~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~  368 (644)
T 2z6h_A          289 NLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWP  368 (644)
T ss_dssp             HHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHH
T ss_pred             HHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchH
Confidence            88876654 78888899999999999863  379999999999999875 3   23556778899999999999875 69


Q ss_pred             HHHHHHHHHHHhccCcccHHHHH-----HHHHHHhccC----------------------CHHHHHHHHHHHHHhhCCCC
Q 044999          278 GKEISEDVFCILAVSEANANAIA-----EHLVRILREG----------------------DNEANAAAADVLWDLAGYKH  330 (461)
Q Consensus       278 ~~~~a~~~L~~l~~~~~~~~~i~-----~~l~~ll~~~----------------------~~~~~~~a~~~L~~l~~~~~  330 (461)
                      ++..++++|.|++.++.++..+.     +.|++++.+.                      +++++..++.+|++|+.++.
T Consensus       369 v~~~a~~~L~nLa~~~~~~~~i~~~~~i~~Lv~lL~~~~~~vr~~a~~al~n~~~~~~~~~~~v~~~a~~aL~~La~~~~  448 (644)
T 2z6h_A          369 LIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVH  448 (644)
T ss_dssp             HHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHHHHHHHTTC----------CCSSCHHHHHHHHHHHHHHHTTSHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHcCCHHHHHHHHhccchhhhhHhhhccccchhcccccHHHHHHHHHHHHHHHhcCHH
Confidence            99999999999999888886665     8888888653                      35677889999999999888


Q ss_pred             chhHHhhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhccCCCHHHHHHHHHHHHHhcCC
Q 044999          331 SVPVIRNSGAIPILVNLLRGENDEVREKVSGAIAQLSYNEADRVALADAGAVPIMIELLHDESEELRDNAAESLINFSED  410 (461)
Q Consensus       331 ~~~~l~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~  410 (461)
                      ++..+.+.|+++.|++++.++++.++..++++|.+++.+++.+..+.+.|+++.|.+++++++++++..|+++|.+++.+
T Consensus       449 ~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~i~~~g~l~~L~~ll~~~~~~vr~~A~~aL~~l~~~  528 (644)
T 2z6h_A          449 NRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSED  528 (644)
T ss_dssp             HHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCHHHHHHHHHcCChhHHHHHHcCCCHHHHHHHHHHHHHHhcc
Confidence            89999999999999999999999999999999999999888999999999999999999999999999999999999988


Q ss_pred             Cc
Q 044999          411 PL  412 (461)
Q Consensus       411 ~~  412 (461)
                      ..
T Consensus       529 ~~  530 (644)
T 2z6h_A          529 KP  530 (644)
T ss_dssp             SC
T ss_pred             Cc
Confidence            75

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A

Probab=100.00  E-value=2.5e-35  Score=291.31  Aligned_cols=395  Identities=14%  Similarity=0.115  Sum_probs=340.3

Q ss_pred             hHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHhcCCCC-CHHHHHHHHHHHHHHhcc
Q 044999           49 TIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQADGALATEIGQSGVINSVLRLFPQS-DDSFRTVLVKCLRVFVTF  127 (461)
Q Consensus        49 ~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~ll~~~-~~~~~~~~~~~l~~l~~~  127 (461)
                      .++.+++.|++      +++..|..|+.+|.++...+.......+.+.|+++.|+++|+++ ++.++..+++++.+++..
T Consensus        88 ~i~~lv~~L~s------~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~  161 (530)
T 1wa5_B           88 ELPQMTQQLNS------DDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASG  161 (530)
T ss_dssp             CHHHHHHHHSC------SSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHcC------CCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCC
Confidence            89999999986      46788999999999997642344556778899999999999997 899999999999999988


Q ss_pred             ChhhHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHhhC-ChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHH
Q 044999          128 GNENRVIVARNGGLEIVIDLLNSCNDGTRRYLLEILSALAL-LREVRRVLICLGGLRYLVEAVSFGSMVSRERACQAIGL  206 (461)
Q Consensus       128 ~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~  206 (461)
                      +++.+..+...|+++.|+.++.++++.++..|+++|.+++. +++.+..+...|+++.|+.++.+.+..++..++++|++
T Consensus       162 ~~~~~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~  241 (530)
T 1wa5_B          162 TSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSN  241 (530)
T ss_dssp             CHHHHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHH
Confidence            88889999999999999999999999999999999999995 57788888999999999999999999999999999999


Q ss_pred             hhcCc-hhHHHHHhcCChHHHHHhcccCCHHHHHHHHHHHHHHhcC-ccchhhhhhcCCHHHHHHHhCCCChhHHHHHHH
Q 044999          207 LAVTG-RARRLLVELGVIPGLVELFHIGDWTTKLVAGNTLGVVAAH-VEYITPVAEAGAIPLYAELLQGPDSTGKEISED  284 (461)
Q Consensus       207 l~~~~-~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~  284 (461)
                      ++... +........++++.|+.++.++++.++..++++|.+++.. ++....+.+.|+++.|+.++.+.++.++..++.
T Consensus       242 L~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~  321 (530)
T 1wa5_B          242 LCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALR  321 (530)
T ss_dssp             HHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHH
T ss_pred             HhCCCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHH
Confidence            99876 4445556688999999999999999999999999999987 556777888899999999999999999999999


Q ss_pred             HHHHhccCccc-HHHHH-----HHHHHHhccCCHHHHHHHHHHHHHhhC-CCCchhHHhhcCCHHHHHHhhcCCCHHHHH
Q 044999          285 VFCILAVSEAN-ANAIA-----EHLVRILREGDNEANAAAADVLWDLAG-YKHSVPVIRNSGAIPILVNLLRGENDEVRE  357 (461)
Q Consensus       285 ~L~~l~~~~~~-~~~i~-----~~l~~ll~~~~~~~~~~a~~~L~~l~~-~~~~~~~l~~~g~i~~L~~ll~~~~~~v~~  357 (461)
                      +|.+++...+. ...+.     +.++.+|.++++.++..|+++|.+++. +++....+.+.|+++.|+.++.++++.++.
T Consensus       322 ~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~  401 (530)
T 1wa5_B          322 AVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKK  401 (530)
T ss_dssp             HHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHH
Confidence            99999866543 33332     899999999999999999999999996 455667778899999999999999999999


Q ss_pred             HHHHHHHHhcC--Ch--hhHHHHHhCCChHHHHHhccCCCHHHHHHHHHHHHHhcCCCcc------------hHHHHHhh
Q 044999          358 KVSGAIAQLSY--NE--ADRVALADAGAVPIMIELLHDESEELRDNAAESLINFSEDPLQ------------HERISEAI  421 (461)
Q Consensus       358 ~a~~~L~~l~~--~~--~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~------------~~~l~~~~  421 (461)
                      .++++|++++.  .+  +....+.+.|+++.|+.++.+.++.++..++++|.++....+.            ...+.+.+
T Consensus       402 ~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g  481 (530)
T 1wa5_B          402 EACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAG  481 (530)
T ss_dssp             HHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTT
T ss_pred             HHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHcC
Confidence            99999999998  34  6778888999999999999999999999999999999865432            24455666


Q ss_pred             CCchHHhHHHHHHHhhhchhHHHHHHHHHhHhhhc
Q 044999          422 GIPSFQSMQSRLTRIRASDDLMARSMRRMSIEQLT  456 (461)
Q Consensus       422 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~  456 (461)
                      ++..+..+++       +.++.+++.+..+++.+-
T Consensus       482 ~~~~L~~L~~-------~~~~~v~~~a~~il~~~~  509 (530)
T 1wa5_B          482 GMEKIFNCQQ-------NENDKIYEKAYKIIETYF  509 (530)
T ss_dssp             HHHHHHGGGG-------CSCHHHHHHHHHHHHHHS
T ss_pred             cHHHHHHHHc-------CCCHHHHHHHHHHHHHHC
Confidence            6666555443       336678888888777653

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}

Probab=100.00  E-value=8.9e-37  Score=289.09  Aligned_cols=352  Identities=18%  Similarity=0.210  Sum_probs=295.9

Q ss_pred             hHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHhcCCCC------------CHHHHHH
Q 044999           49 TIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQADGALATEIGQSGVINSVLRLFPQS------------DDSFRTV  116 (461)
Q Consensus        49 ~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~ll~~~------------~~~~~~~  116 (461)
                      .++.++..+.+    .+.  +   ...+.|..+..  +...+..+++.|++|.|+++|+..            +++.+..
T Consensus        33 ~~~~l~~~~~~----~~~--~---~~~~~ll~~~~--~~~~~~~~~~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~  101 (458)
T 3nmz_A           33 MVYSLLSMLGT----HDK--D---DMSRTLLAMSS--SQDSCISMRQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARAR  101 (458)
T ss_dssp             ----------------CC--H---HHHHHHHHHHS--STTHHHHHHHHTCHHHHHHHHTCTTCCSCC---CCCCHHHHHH
T ss_pred             HHHHHHHHhcC----CCH--H---HHHHHHHHHHc--CCcHHHHHHHCCCHHHHHHHHhcccccccccccccCCHHHHHH
Confidence            67788888875    332  2   36688999998  666888999999999999999963            3689999


Q ss_pred             HHHHHHHHhccChhhHHHHHHcCCH----------HHHHHHhcCCC--hH-----HHH-------HHHHHHHHhhCChHH
Q 044999          117 LVKCLRVFVTFGNENRVIVARNGGL----------EIVIDLLNSCN--DG-----TRR-------YLLEILSALALLREV  172 (461)
Q Consensus       117 ~~~~l~~l~~~~~~~~~~~~~~g~i----------~~L~~ll~~~~--~~-----~~~-------~a~~~L~~l~~~~~~  172 (461)
                      +++++.+++...++......+.|.+          +.+++++.+..  .+     +++       .|+++|.|++.++++
T Consensus       102 a~~al~ni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qAv~aL~nls~~~e~  181 (458)
T 3nmz_A          102 ASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEH  181 (458)
T ss_dssp             HHHHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSSCCCSCC--CCCTTTTHHHHHHHHHHTTSHHH
T ss_pred             HHHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccccccCCccchhhHHHHHHHHHHHHhcCCHHH
Confidence            9999999999888888888888877          66667776542  11     444       999999999999999


Q ss_pred             HHHHHhcCCHHHHHHHHcC-----------CCHHHHHHHHHHHHHhhcCchh-HHHHHh-cCChHHHHHhcccCCHHHHH
Q 044999          173 RRVLICLGGLRYLVEAVSF-----------GSMVSRERACQAIGLLAVTGRA-RRLLVE-LGVIPGLVELFHIGDWTTKL  239 (461)
Q Consensus       173 ~~~~~~~~~l~~l~~~l~~-----------~~~~~~~~a~~~L~~l~~~~~~-~~~~~~-~~~i~~L~~ll~~~~~~~~~  239 (461)
                      |..+.+.|+++.|+.++..           .++.++..|+++|.||+..++. +..+.. .|+++.|+.+|.++++++++
T Consensus       182 R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~  261 (458)
T 3nmz_A          182 RHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQ  261 (458)
T ss_dssp             HHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHhCCCHHHHH
Confidence            9999999999999999952           2467899999999999998875 656654 56699999999999999999


Q ss_pred             HHHHHHHHHhcC--ccchhhhhhcCCHHHHHHHh-CCCChhHHHHHHHHHHHhcc-CcccHHHHH------HHHHHHhcc
Q 044999          240 VAGNTLGVVAAH--VEYITPVAEAGAIPLYAELL-QGPDSTGKEISEDVFCILAV-SEANANAIA------EHLVRILRE  309 (461)
Q Consensus       240 ~a~~~L~~l~~~--~~~~~~~~~~g~i~~L~~ll-~~~~~~~~~~a~~~L~~l~~-~~~~~~~i~------~~l~~ll~~  309 (461)
                      .|+++|+||+..  ++++..+.+.|+++.|+.+| .+.++.+++.++.+|.||+. .++++..+.      +.|+++|.+
T Consensus       262 ~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~  341 (458)
T 3nmz_A          262 VIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTY  341 (458)
T ss_dssp             HHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTC
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcC
Confidence            999999999985  56889999999999999975 56688999999999999998 667777765      999999987


Q ss_pred             CCH----HHHHHHHHHHHHhhC----CCCchhHHhhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcC-ChhhHHHHHhCC
Q 044999          310 GDN----EANAAAADVLWDLAG----YKHSVPVIRNSGAIPILVNLLRGENDEVREKVSGAIAQLSY-NEADRVALADAG  380 (461)
Q Consensus       310 ~~~----~~~~~a~~~L~~l~~----~~~~~~~l~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~-~~~~~~~~~~~~  380 (461)
                      +++    ++++.|+++|+|++.    +++++..+.+.|+++.|+.+|.+++..+++.|+++|+|++. +++++..+.+.|
T Consensus       342 ~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G  421 (458)
T 3nmz_A          342 RSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMG  421 (458)
T ss_dssp             CCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSSCHHHHHHHHHHT
T ss_pred             CCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHCC
Confidence            754    589999999999994    78889999999999999999999999999999999999996 899999999999


Q ss_pred             ChHHHHHhccCCCHHHHHHHHHHHHHhcCCC
Q 044999          381 AVPIMIELLHDESEELRDNAAESLINFSEDP  411 (461)
Q Consensus       381 ~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~  411 (461)
                      +++.|+++++++++.+++.|+++|.||+.+.
T Consensus       422 ~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~  452 (458)
T 3nmz_A          422 AVSMLKNLIHSKHKMIAMGSAAALRNLMANR  452 (458)
T ss_dssp             HHHHHHTTTTCSSHHHHHHHHHHHHHHHTCC
T ss_pred             CHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence            9999999999999999999999999998654

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24

Probab=100.00  E-value=2.1e-36  Score=291.71  Aligned_cols=357  Identities=17%  Similarity=0.175  Sum_probs=307.6

Q ss_pred             hHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHhcCCCCCHHHHHHHHHHHHHHhccC
Q 044999           49 TIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQADGALATEIGQSGVINSVLRLFPQSDDSFRTVLVKCLRVFVTFG  128 (461)
Q Consensus        49 ~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~l~~~~  128 (461)
                      .++.++++|++      ++++.|..|+.+|.+++.+ ++..+..+.+.|+++.|+++|+++++.++..+++++.+++..+
T Consensus         3 ~l~~lv~~L~s------~~~~~q~~A~~~L~~l~~~-~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~   75 (457)
T 1xm9_A            3 TIPKAVQYLSS------QDEKYQAIGAYYIQHTCFQ-DESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRS   75 (457)
T ss_dssp             CHHHHHHHHHS------SCTHHHHHHHHHHHHHTSS-CSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSC
T ss_pred             CHHHHHHHHCC------CCHHHHHHHHHHHHHHHcC-ChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC
Confidence            47899999987      3567899999999999975 6667778999999999999999999999999999999999888


Q ss_pred             hhhHHHHHHcCCHHHHHHHhc-CCChHHHHHHHHHHHHhhCChHHHHHHHhcCCHHHHHHHHc--------C--------
Q 044999          129 NENRVIVARNGGLEIVIDLLN-SCNDGTRRYLLEILSALALLREVRRVLICLGGLRYLVEAVS--------F--------  191 (461)
Q Consensus       129 ~~~~~~~~~~g~i~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~~l~--------~--------  191 (461)
                      ++++..+.+.|+++.|+++|+ +.++.+++.|+++|++++.+++.+..+++ |+++.|+.++.        +        
T Consensus        76 ~~~k~~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~  154 (457)
T 1xm9_A           76 TTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREV  154 (457)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHH-HHHHHHHHHTTHHHHTCC---------C
T ss_pred             HHHHHHHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHHHHHh-ccHHHHHHHHhccccccccCccchhccc
Confidence            899999999999999999999 88899999999999999987889998999 99999999993        2        


Q ss_pred             CCHHHHHHHHHHHHHhhcCchhHHHHHhc-CChHHHHHhccc------CCHHHHHHHHHHHHHHhcC-------------
Q 044999          192 GSMVSRERACQAIGLLAVTGRARRLLVEL-GVIPGLVELFHI------GDWTTKLVAGNTLGVVAAH-------------  251 (461)
Q Consensus       192 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~-~~i~~L~~ll~~------~~~~~~~~a~~~L~~l~~~-------------  251 (461)
                      .+.++...|+++|+||+..++.+..+.+. |+++.|+.++++      .+...++.++.+|++++..             
T Consensus       155 ~~~~v~~~a~~aL~nLs~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~  234 (457)
T 1xm9_A          155 VDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLE  234 (457)
T ss_dssp             CCHHHHHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHccCHHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhcc
Confidence            24567779999999999986668889987 999999999985      4566888899999998732             


Q ss_pred             --------------------------------------ccchhhhhhcCCHHHHHHHhCCC-ChhHHHHHHHHHHHhccC
Q 044999          252 --------------------------------------VEYITPVAEAGAIPLYAELLQGP-DSTGKEISEDVFCILAVS  292 (461)
Q Consensus       252 --------------------------------------~~~~~~~~~~g~i~~L~~ll~~~-~~~~~~~a~~~L~~l~~~  292 (461)
                                                            +...+.+...|+++.|+.++.+. ++++++.|+++|.|++..
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~  314 (457)
T 1xm9_A          235 YNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTAS  314 (457)
T ss_dssp             HTC----------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTC
T ss_pred             cccccccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccC
Confidence                                                  11223455667889999998754 789999999999999765


Q ss_pred             ccc------HHHHH-----HHHHHHhccCCHHHHHHHHHHHHHhhCCCCchhHHhhcCCHHHHHHhhcCCC------HHH
Q 044999          293 EAN------ANAIA-----EHLVRILREGDNEANAAAADVLWDLAGYKHSVPVIRNSGAIPILVNLLRGEN------DEV  355 (461)
Q Consensus       293 ~~~------~~~i~-----~~l~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~ll~~~~------~~v  355 (461)
                      ...      +..+.     +.|+++|.+++++++..|+++|.|++.+++++..+. .|+++.|+++|..++      +++
T Consensus       315 ~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~~~~~~i~-~~~i~~Lv~lL~~~~~~~~~~~~v  393 (457)
T 1xm9_A          315 KGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVMG-NQVFPEVTRLLTSHTGNTSNSEDI  393 (457)
T ss_dssp             SSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGGGHHHHH-HHTHHHHHHTTTSCCSCSTTHHHH
T ss_pred             cCcchHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCHHHHHHHH-HhhhHHHHHhccCCCCCCCCcHHH
Confidence            432      22221     999999999999999999999999999887776665 479999999999764      368


Q ss_pred             HHHHHHHHHHhcC-ChhhHHHHHhCCChHHHHHhccCC-CHHHHHHHHHHHHHhcCCCcch
Q 044999          356 REKVSGAIAQLSY-NEADRVALADAGAVPIMIELLHDE-SEELRDNAAESLINFSEDPLQH  414 (461)
Q Consensus       356 ~~~a~~~L~~l~~-~~~~~~~~~~~~~i~~L~~ll~~~-~~~~~~~a~~~L~~l~~~~~~~  414 (461)
                      ...++++|.++.. ++++...+.+.|+++.|++++.++ ++.+++.|+++|.++..+.+-+
T Consensus       394 ~~~~l~~l~ni~~~~~~~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~~L~~~~~~~~l~  454 (457)
T 1xm9_A          394 LSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSSKELQ  454 (457)
T ss_dssp             HHHHHHHHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSSSTTCS
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHHcCCCcHHHHHHHHHHHHHHHcchhhh
Confidence            8899999999988 888899999999999999999998 9999999999999998877644

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A

Probab=100.00  E-value=3.9e-35  Score=284.51  Aligned_cols=400  Identities=16%  Similarity=0.139  Sum_probs=339.5

Q ss_pred             CcHHHh---HHHHHHHhhcCCHHHHHHHHHHHHhhc----CCCchhHHHh--hHHHHHHhhccCCCCCCCcHHHHHHHHH
Q 044999            6 TNWEEA---FNRFEQAVVSGSEALQVKALTKLARVS----KFAPQDILAA--TIPILARLLGENNFSGNLTRSIQQAAAY   76 (461)
Q Consensus         6 ~~~~~~---~~~l~~ll~~~~~~~~~~a~~~l~~la----~~~~~~~l~~--~i~~l~~~l~~~~~~~~~~~~~~~~a~~   76 (461)
                      .+|.+.   ++.+++.+.++++.+|..|+..|..+.    ++..+..+..  .++.|+++|++    + +++.+|..|++
T Consensus        13 ~~w~~~~~~l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~----~-~~~~v~~~a~~   87 (450)
T 2jdq_A           13 MEMAPGGVITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKR----K-ENCTLQFESAW   87 (450)
T ss_dssp             ---------CHHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTC----T-TCHHHHHHHHH
T ss_pred             HhhccccccHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCC----C-CCHHHHHHHHH
Confidence            357666   899999999999999999999999975    2222333443  79999999986    3 36789999999


Q ss_pred             HHHHHHhcCCchhHHHHHhcCCHHHHHhcCCCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhcC-CChHH
Q 044999           77 CLKQIASQADGALATEIGQSGVINSVLRLFPQSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLNS-CNDGT  155 (461)
Q Consensus        77 ~L~~l~~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll~~-~~~~~  155 (461)
                      +|.+++.. +.+....+.+.|+++.|+++++++++.++..+++++.+++..+++.+..+.+.|+++.|+.++.+ .++.+
T Consensus        88 ~L~~l~~~-~~~~~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v  166 (450)
T 2jdq_A           88 VLTNIASG-NSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTM  166 (450)
T ss_dssp             HHHHHHSS-CHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHH
T ss_pred             HHHHHhcC-CHHHHHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHH
Confidence            99999985 55666777889999999999999999999999999999998888899999999999999999995 68899


Q ss_pred             HHHHHHHHHHhhCCh--HHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCchh-HHHHHhcCChHHHHHhccc
Q 044999          156 RRYLLEILSALALLR--EVRRVLICLGGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRA-RRLLVELGVIPGLVELFHI  232 (461)
Q Consensus       156 ~~~a~~~L~~l~~~~--~~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~-~~~~~~~~~i~~L~~ll~~  232 (461)
                      +..|+++|.+++.+.  .....+. .++++.|+.++.++++.++..++++|.+++...+. ...+.+.|+++.|+.++.+
T Consensus       167 ~~~a~~~L~~l~~~~~~~~~~~~~-~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~  245 (450)
T 2jdq_A          167 TRNAVWALSNLCRGKSPPPEFAKV-SPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMH  245 (450)
T ss_dssp             HHHHHHHHHHHHCCSSSCCCGGGT-GGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTC
T ss_pred             HHHHHHHHHHHhCCCCCCCCHHHH-HHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCC
Confidence            999999999999543  3222233 78999999999999999999999999999987655 7778889999999999999


Q ss_pred             CCHHHHHHHHHHHHHHhcC-ccchhhhhhcCCHHHHHHHhCCCChhHHHHHHHHHHHhccC-cccHHHHH-----HHHHH
Q 044999          233 GDWTTKLVAGNTLGVVAAH-VEYITPVAEAGAIPLYAELLQGPDSTGKEISEDVFCILAVS-EANANAIA-----EHLVR  305 (461)
Q Consensus       233 ~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~-~~~~~~i~-----~~l~~  305 (461)
                      +++.++..++++|++++.. +.....+.+.|+++.|+.++.++++.++..++++|.+++.. +.....+.     +.+++
T Consensus       246 ~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~  325 (450)
T 2jdq_A          246 NDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALIS  325 (450)
T ss_dssp             SCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHH
T ss_pred             CchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHH
Confidence            9999999999999999987 44556677889999999999999999999999999999864 34443333     89999


Q ss_pred             HhccCCHHHHHHHHHHHHHhhC--CCCchhHHhhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcC-Chh-----------
Q 044999          306 ILREGDNEANAAAADVLWDLAG--YKHSVPVIRNSGAIPILVNLLRGENDEVREKVSGAIAQLSY-NEA-----------  371 (461)
Q Consensus       306 ll~~~~~~~~~~a~~~L~~l~~--~~~~~~~l~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~-~~~-----------  371 (461)
                      ++.+++++++..|+++|.+++.  .++....+.+.|+++.|++++.++++.++..++++|.+++. .+.           
T Consensus       326 ~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~~~  405 (450)
T 2jdq_A          326 ILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEAKRNGTGINP  405 (450)
T ss_dssp             HHHHSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHHHHHHHHHSCSCCCH
T ss_pred             HHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhccccchhH
Confidence            9999999999999999999995  45667778889999999999999999999999999999998 322           


Q ss_pred             hHHHHHhCCChHHHHHhccCCCHHHHHHHHHHHHHhcCCCc
Q 044999          372 DRVALADAGAVPIMIELLHDESEELRDNAAESLINFSEDPL  412 (461)
Q Consensus       372 ~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~  412 (461)
                      ....+.+.|+++.|..+..+++.+++..|..+|.++..+.+
T Consensus       406 ~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~~~  446 (450)
T 2jdq_A          406 YCALIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHYFGTED  446 (450)
T ss_dssp             HHHHHHHHHCHHHHHHHHCHHHHHHHHHHHHHHHHHHCCC-
T ss_pred             HHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCccc
Confidence            24567788999999999988899999999999999875543

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}

Probab=100.00  E-value=1.4e-34  Score=296.34  Aligned_cols=397  Identities=19%  Similarity=0.258  Sum_probs=343.0

Q ss_pred             HHhHHHHHHHhhcC-CHHHHHHHHHHHHhhc-CCCchhHHHh--hHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHhc
Q 044999            9 EEAFNRFEQAVVSG-SEALQVKALTKLARVS-KFAPQDILAA--TIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQ   84 (461)
Q Consensus         9 ~~~~~~l~~ll~~~-~~~~~~~a~~~l~~la-~~~~~~~l~~--~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~   84 (461)
                      .+.++.|++.+.++ ++.++..|+.+|.+|+ +..++..+.+  +++.|+++|++      +++.++..|+.+|.+++..
T Consensus       191 ~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~~~~i~~~g~I~~Lv~lL~~------~~~~v~~~A~~aL~nLa~~  264 (780)
T 2z6g_A          191 PQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHREGLLAIFKSGGIPALVNMLGS------PVDSVLFHAITTLHNLLLH  264 (780)
T ss_dssp             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHTTC------SCHHHHHHHHHHHHHHHHH
T ss_pred             cChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhHHHHHHcCCHHHHHHHHcC------CCHHHHHHHHHHHHHHhCC
Confidence            36788999999865 8999999999999999 6666776766  99999999986      4578899999999999985


Q ss_pred             CCchhHHHHHhcCCHHHHHhcCCCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhcCCCh-HHHHHHHHHH
Q 044999           85 ADGALATEIGQSGVINSVLRLFPQSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLNSCND-GTRRYLLEIL  163 (461)
Q Consensus        85 ~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~-~~~~~a~~~L  163 (461)
                       ++..+..+.+.|+++.|++++++++..++..++.++..++..+++++..+.+.|+++.|+.++++.++ ..+..++.+|
T Consensus       265 -~~~~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL  343 (780)
T 2z6g_A          265 -QEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVL  343 (780)
T ss_dssp             -STTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHH
T ss_pred             -ChhhHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHH
Confidence             56778888899999999999999999999999999999998888999999999999999999987765 4566788999


Q ss_pred             HHhhCChHHHHHHHhcCCHHHHH---------------------------------------HHHcCCCHHHHHHHHHHH
Q 044999          164 SALALLREVRRVLICLGGLRYLV---------------------------------------EAVSFGSMVSRERACQAI  204 (461)
Q Consensus       164 ~~l~~~~~~~~~~~~~~~l~~l~---------------------------------------~~l~~~~~~~~~~a~~~L  204 (461)
                      .+++.++.++..+++.|+++.|+                                       .++.+.++.++..|+++|
T Consensus       344 ~~Ls~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL  423 (780)
T 2z6g_A          344 KVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGIL  423 (780)
T ss_dssp             HHHHTSTTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred             HHhhcChHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHH
Confidence            99998777777777766555554                                       445556777888888889


Q ss_pred             HHhhcCchh-HHHHHhcCChHHHHHhccc-CC-HHHHHHHHHHHHHHhcC-cc---chhhhhhcCCHHHHHHHhCCCCh-
Q 044999          205 GLLAVTGRA-RRLLVELGVIPGLVELFHI-GD-WTTKLVAGNTLGVVAAH-VE---YITPVAEAGAIPLYAELLQGPDS-  276 (461)
Q Consensus       205 ~~l~~~~~~-~~~~~~~~~i~~L~~ll~~-~~-~~~~~~a~~~L~~l~~~-~~---~~~~~~~~g~i~~L~~ll~~~~~-  276 (461)
                      ++|+...+. +..+.+.|+++.|+.++.+ ++ ..++..|+++|++|+.. ++   .+..+...|+++.|+.++.+.+. 
T Consensus       424 ~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~  503 (780)
T 2z6g_A          424 SNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHW  503 (780)
T ss_dssp             HHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCH
T ss_pred             HHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChH
Confidence            998887655 7788889999999999985 33 48999999999999875 33   25677888999999999998864 


Q ss_pred             hHHHHHHHHHHHhccCcccHHHHH-----HHHHHHhccCC----------------------HHHHHHHHHHHHHhhCCC
Q 044999          277 TGKEISEDVFCILAVSEANANAIA-----EHLVRILREGD----------------------NEANAAAADVLWDLAGYK  329 (461)
Q Consensus       277 ~~~~~a~~~L~~l~~~~~~~~~i~-----~~l~~ll~~~~----------------------~~~~~~a~~~L~~l~~~~  329 (461)
                      .++..++++|.|++..+.++..+.     +.|+++|.+++                      ++++..++.+|++|+.++
T Consensus       504 ~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~al~nq~~~~~~~~~~v~~~a~~aL~~La~~~  583 (780)
T 2z6g_A          504 PLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARDI  583 (780)
T ss_dssp             HHHHHHHHHHHHHHSSHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTC------CCSTTCCHHHHHHHHHHHHHHHTTSH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHCCCHHHHHHHHHhcchhHHHHHhhccccchhhcccChHHHHHHHHHHHHHHhcCh
Confidence            999999999999998888776555     78888876532                      457788999999999888


Q ss_pred             CchhHHhhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhccCCCHHHHHHHHHHHHHhcC
Q 044999          330 HSVPVIRNSGAIPILVNLLRGENDEVREKVSGAIAQLSYNEADRVALADAGAVPIMIELLHDESEELRDNAAESLINFSE  409 (461)
Q Consensus       330 ~~~~~l~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~  409 (461)
                      .++..+.+.|+++.|+.++.++++.++..++.+|.+++.+++.+..+.+.|+++.|.+++++++++++..|.++|.+++.
T Consensus       584 ~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~i~~~g~i~~L~~Ll~~~~~~Vr~~A~~aL~~l~~  663 (780)
T 2z6g_A          584 HNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSE  663 (780)
T ss_dssp             HHHHHHHHTCCHHHHHHGGGCSCHHHHHHHHHHHHHHHTSHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHT
T ss_pred             hhHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence            88888999999999999999999999999999999999998999999999999999999999999999999999999998


Q ss_pred             CCc
Q 044999          410 DPL  412 (461)
Q Consensus       410 ~~~  412 (461)
                      +..
T Consensus       664 ~~~  666 (780)
T 2z6g_A          664 DKP  666 (780)
T ss_dssp             TSC
T ss_pred             CCh
Confidence            876

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A

Probab=100.00  E-value=2e-34  Score=279.44  Aligned_cols=393  Identities=16%  Similarity=0.145  Sum_probs=332.7

Q ss_pred             hHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHhc-CCchhHHHHHhc-CCHHHHHhcCCCC-CHHHHHHHHHHHHHHh
Q 044999           49 TIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQ-ADGALATEIGQS-GVINSVLRLFPQS-DDSFRTVLVKCLRVFV  125 (461)
Q Consensus        49 ~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~~~-~~l~~L~~ll~~~-~~~~~~~~~~~l~~l~  125 (461)
                      .++.+++.+++      +++.++..|+.+|..+... .++.. ..+.+. |+++.|+++|+++ ++.++..++.++.+++
T Consensus        21 ~l~~l~~~l~s------~~~~~r~~A~~~L~~l~~~~~~~~~-~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~   93 (450)
T 2jdq_A           21 ITSDMIEMIFS------KSPEQQLSATQKFRKLLSKEPNPPI-DEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIA   93 (450)
T ss_dssp             -CHHHHHHHHS------SCHHHHHHHHHHHHHHHHSSSSCCH-HHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHhcC------CCHHHHHHHHHHHHHHhcCCCCCcH-HHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHh
Confidence            38999999986      4677888899999998652 13333 345566 9999999999988 8999999999999999


Q ss_pred             ccChhhHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHhh-CChHHHHHHHhcCCHHHHHHHHcC-CCHHHHHHHHHH
Q 044999          126 TFGNENRVIVARNGGLEIVIDLLNSCNDGTRRYLLEILSALA-LLREVRRVLICLGGLRYLVEAVSF-GSMVSRERACQA  203 (461)
Q Consensus       126 ~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~-~~~~~~~~~~~~~~l~~l~~~l~~-~~~~~~~~a~~~  203 (461)
                      ..+++....+.+.|+++.|+++++++++.++..|+.+|.+++ .+++.+..+.+.|+++.++.++.+ .+..++..++++
T Consensus        94 ~~~~~~~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~  173 (450)
T 2jdq_A           94 SGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWA  173 (450)
T ss_dssp             SSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHH
T ss_pred             cCCHHHHHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHH
Confidence            888788888889999999999999999999999999999999 456788889999999999999996 689999999999


Q ss_pred             HHHhhcCc-hh-HHHHHhcCChHHHHHhcccCCHHHHHHHHHHHHHHhcC-ccchhhhhhcCCHHHHHHHhCCCChhHHH
Q 044999          204 IGLLAVTG-RA-RRLLVELGVIPGLVELFHIGDWTTKLVAGNTLGVVAAH-VEYITPVAEAGAIPLYAELLQGPDSTGKE  280 (461)
Q Consensus       204 L~~l~~~~-~~-~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~g~i~~L~~ll~~~~~~~~~  280 (461)
                      |++++... +. ...+. .++++.|+.++.++++.++..++++|.+++.. ++....+.+.|+++.|+.++.+.+++++.
T Consensus       174 L~~l~~~~~~~~~~~~~-~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~  252 (450)
T 2jdq_A          174 LSNLCRGKSPPPEFAKV-SPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVS  252 (450)
T ss_dssp             HHHHHCCSSSCCCGGGT-GGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHH
T ss_pred             HHHHhCCCCCCCCHHHH-HHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHH
Confidence            99999765 33 33333 78999999999999999999999999999987 56677778889999999999999999999


Q ss_pred             HHHHHHHHhccCcccHHH-HH-----HHHHHHhccCCHHHHHHHHHHHHHhhC-CCCchhHHhhcCCHHHHHHhhcCCCH
Q 044999          281 ISEDVFCILAVSEANANA-IA-----EHLVRILREGDNEANAAAADVLWDLAG-YKHSVPVIRNSGAIPILVNLLRGEND  353 (461)
Q Consensus       281 ~a~~~L~~l~~~~~~~~~-i~-----~~l~~ll~~~~~~~~~~a~~~L~~l~~-~~~~~~~l~~~g~i~~L~~ll~~~~~  353 (461)
                      .++.+|.+++...+.... +.     +.+++++.++++.++..|+++|++++. .++....+.+.|+++.|+.++.++++
T Consensus       253 ~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~  332 (450)
T 2jdq_A          253 PALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEF  332 (450)
T ss_dssp             HHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCH
T ss_pred             HHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCH
Confidence            999999999876654332 22     999999999999999999999999996 45667778888999999999999999


Q ss_pred             HHHHHHHHHHHHhcC--ChhhHHHHHhCCChHHHHHhccCCCHHHHHHHHHHHHHhcCCCcc------------hHHHHH
Q 044999          354 EVREKVSGAIAQLSY--NEADRVALADAGAVPIMIELLHDESEELRDNAAESLINFSEDPLQ------------HERISE  419 (461)
Q Consensus       354 ~v~~~a~~~L~~l~~--~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~------------~~~l~~  419 (461)
                      .++..++++|++++.  +++....+.+.|+++.|++++.+++++++..++++|.+++...+.            ...+.+
T Consensus       333 ~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~  412 (450)
T 2jdq_A          333 RTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEAKRNGTGINPYCALIEE  412 (450)
T ss_dssp             HHHHHHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHHHHHHHHHSCSCCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhccccchhHHHHHHHH
Confidence            999999999999987  567777788999999999999999999999999999999865432            245666


Q ss_pred             hhCCchHHhHHHHHHHhhhchhHHHHHHHHHhHhhhc
Q 044999          420 AIGIPSFQSMQSRLTRIRASDDLMARSMRRMSIEQLT  456 (461)
Q Consensus       420 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~  456 (461)
                      .+|.+.+..+.+       +.++.+++.+..+++.+-
T Consensus       413 ~g~~~~l~~l~~-------~~~~~v~~~a~~~l~~~~  442 (450)
T 2jdq_A          413 AYGLDKIEFLQS-------HENQEIYQKAFDLIEHYF  442 (450)
T ss_dssp             HHCHHHHHHHHC-------HHHHHHHHHHHHHHHHHH
T ss_pred             cCcHHHHHHHHc-------CCCHHHHHHHHHHHHHHC
Confidence            677666554432       236678888877777653

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A

Probab=100.00  E-value=5.3e-35  Score=282.76  Aligned_cols=365  Identities=15%  Similarity=0.123  Sum_probs=310.6

Q ss_pred             HHhHHHHHHHhhcCCHHHHHHHHHHHHhhc--CCCchhHHHh--hHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHhc
Q 044999            9 EEAFNRFEQAVVSGSEALQVKALTKLARVS--KFAPQDILAA--TIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQ   84 (461)
Q Consensus         9 ~~~~~~l~~ll~~~~~~~~~~a~~~l~~la--~~~~~~~l~~--~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~   84 (461)
                      ...++.++.+|.++++.++..|+..|.+++  ++.++..+.+  +||.|+++|++      +++.+|..|+++|.+|+..
T Consensus        47 ~~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s------~~~~vq~~Aa~AL~nLa~~  120 (584)
T 3l6x_A           47 QPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDH------PKKEVHLGACGALKNISFG  120 (584)
T ss_dssp             CCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGC------SSHHHHHHHHHHHHHHTSS
T ss_pred             cccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCC------CCHHHHHHHHHHHHHHHcc
Confidence            446899999999999999999999999999  6677887877  99999999987      4678999999999999983


Q ss_pred             CCchhHHHHHhcCCHHHHHhcCCC-CCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhc--------------
Q 044999           85 ADGALATEIGQSGVINSVLRLFPQ-SDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLN--------------  149 (461)
Q Consensus        85 ~~~~~~~~~~~~~~l~~L~~ll~~-~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll~--------------  149 (461)
                      .+.+++..+.+.|+++.|+++|++ .+..++..++.+|++|+. +++++..+.+ ++++.|++++.              
T Consensus       121 ~~~~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~-~~~~k~~I~~-~alp~Lv~LL~~p~sg~~~~~~~~~  198 (584)
T 3l6x_A          121 RDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSS-HDSIKMEIVD-HALHALTDEVIIPHSGWEREPNEDC  198 (584)
T ss_dssp             SCHHHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTT-SGGGHHHHHH-HTHHHHHHHTHHHHHCCC-------
T ss_pred             CCHHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhC-CchhhHHHHh-ccHHHHHHHHhcccccccccccccc
Confidence            247899999999999999999997 578889999999999996 5688988886 57999999761              


Q ss_pred             ----CCChHHHHHHHHHHHHhhC-ChHHHHHHHhcC-CHHHHHHHHcC------CCHHHHHHHHHHHHHhhcCchh----
Q 044999          150 ----SCNDGTRRYLLEILSALAL-LREVRRVLICLG-GLRYLVEAVSF------GSMVSRERACQAIGLLAVTGRA----  213 (461)
Q Consensus       150 ----~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~~-~l~~l~~~l~~------~~~~~~~~a~~~L~~l~~~~~~----  213 (461)
                          ..++.+++.|..+|.|++. +++.+..+.+.+ +++.|+.++++      .+...++.|+++|+||+...+.    
T Consensus       199 k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~  278 (584)
T 3l6x_A          199 KPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQ  278 (584)
T ss_dssp             ---CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTT
T ss_pred             cccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccc
Confidence                2357999999999999995 556688888864 56799999874      3568899999999999976321    


Q ss_pred             ----------------------HHHHHhcCChHHHHHhcc-cCCHHHHHHHHHHHHHHhcCc-----cchhhhhhcCCHH
Q 044999          214 ----------------------RRLLVELGVIPGLVELFH-IGDWTTKLVAGNTLGVVAAHV-----EYITPVAEAGAIP  265 (461)
Q Consensus       214 ----------------------~~~~~~~~~i~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~-----~~~~~~~~~g~i~  265 (461)
                                            ...+.+.++++.|+.+++ +.++.+++.|+++|+||+...     .++..+.+.+++|
T Consensus       279 ~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp  358 (584)
T 3l6x_A          279 AERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALS  358 (584)
T ss_dssp             CCC--------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHH
T ss_pred             hhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHH
Confidence                                  112223345677888896 568999999999999998752     2344556678899


Q ss_pred             HHHHHhCCCChhHHHHHHHHHHHhccCcccHHHHH----HHHHHHhccC--------CHHHHHHHHHHHHHhh-CCCCch
Q 044999          266 LYAELLQGPDSTGKEISEDVFCILAVSEANANAIA----EHLVRILREG--------DNEANAAAADVLWDLA-GYKHSV  332 (461)
Q Consensus       266 ~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~i~----~~l~~ll~~~--------~~~~~~~a~~~L~~l~-~~~~~~  332 (461)
                      .|+.+|.+++..+++.++++|.||+.++.++..|.    +.|+++|.++        +.+++..|+++|.|++ .++++.
T Consensus       359 ~Lv~LL~s~~~~v~~~A~~aL~nLs~~~~~~~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~~  438 (584)
T 3l6x_A          359 AIADLLTNEHERVVKAASGALRNLAVDARNKELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAA  438 (584)
T ss_dssp             HHHHGGGCSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHhCChhHHHHHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCHHHH
Confidence            99999999999999999999999999988887766    9999999876        4788999999999998 568899


Q ss_pred             hHHhhcCCHHHHHHhhcCC--CHHHHHHHHHHHHHhcCChhhHHHHHhCCC
Q 044999          333 PVIRNSGAIPILVNLLRGE--NDEVREKVSGAIAQLSYNEADRVALADAGA  381 (461)
Q Consensus       333 ~~l~~~g~i~~L~~ll~~~--~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~  381 (461)
                      ..+.+.|+++.|+.++.++  ++.+++.|+++|++++.+++.+..+.+.|.
T Consensus       439 ~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~~~elr~~~kk~G~  489 (584)
T 3l6x_A          439 KKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWGYKELRKPLEKEGW  489 (584)
T ss_dssp             HHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHTSHHHHHHHHTTTC
T ss_pred             HHHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHHcCHHHHHHHHHcCC
Confidence            9999999999999999986  889999999999999999999999998775

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24

Probab=100.00  E-value=7.7e-35  Score=280.77  Aligned_cols=354  Identities=15%  Similarity=0.101  Sum_probs=301.2

Q ss_pred             hHHHHHHHhhcCCHHHHHHHHHHHHhhc--CCCchhHHHh--hHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHhcCC
Q 044999           11 AFNRFEQAVVSGSEALQVKALTKLARVS--KFAPQDILAA--TIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQAD   86 (461)
Q Consensus        11 ~~~~l~~ll~~~~~~~~~~a~~~l~~la--~~~~~~~l~~--~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~   86 (461)
                      .++.++.+++++++.++..|+.+|.+++  ++..+..+.+  +||.|+++|++      +++..|..|+++|.+|+.+ +
T Consensus         3 ~l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s------~~~~~~~~A~~aL~nLa~~-~   75 (457)
T 1xm9_A            3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRS------PNQNVQQAAAGALRNLVFR-S   75 (457)
T ss_dssp             CHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTS------SCHHHHHHHHHHHHHHHSS-C
T ss_pred             CHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcC------CCHHHHHHHHHHHHHHhcC-C
Confidence            5789999999999999999999999999  4455656666  99999999986      5678999999999999985 5


Q ss_pred             chhHHHHHhcCCHHHHHhcCC-CCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHh--------cC-------
Q 044999           87 GALATEIGQSGVINSVLRLFP-QSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLL--------NS-------  150 (461)
Q Consensus        87 ~~~~~~~~~~~~l~~L~~ll~-~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll--------~~-------  150 (461)
                      ++++..+.+.|+++.|+++|+ ++++.++..++++|.+++.. ++++..+.+ |+++.|++++        ++       
T Consensus        76 ~~~k~~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~-~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e  153 (457)
T 1xm9_A           76 TTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSST-DELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSRE  153 (457)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS-SSTHHHHHH-HHHHHHHHHTTHHHHTCC---------
T ss_pred             HHHHHHHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcC-HHhHHHHHh-ccHHHHHHHHhccccccccCccchhcc
Confidence            889999999999999999999 88999999999999999977 689998999 9999999999        22       


Q ss_pred             -CChHHHHHHHHHHHHhhCChHHHHHHHhc-CCHHHHHHHHcC------CCHHHHHHHHHHHHHhhcCc-----------
Q 044999          151 -CNDGTRRYLLEILSALALLREVRRVLICL-GGLRYLVEAVSF------GSMVSRERACQAIGLLAVTG-----------  211 (461)
Q Consensus       151 -~~~~~~~~a~~~L~~l~~~~~~~~~~~~~-~~l~~l~~~l~~------~~~~~~~~a~~~L~~l~~~~-----------  211 (461)
                       .++.+...|+++|.+++.+++++..+.+. |+++.|+.++.+      .+..++..++.+|++++...           
T Consensus       154 ~~~~~v~~~a~~aL~nLs~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~  233 (457)
T 1xm9_A          154 VVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQL  233 (457)
T ss_dssp             CCCHHHHHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHH
T ss_pred             cccHHHHHHHHHHHHHHccCHHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhc
Confidence             24567779999999999778899999997 999999999986      34567788888899987321           


Q ss_pred             ----------------------------------------hhHHHHHhcCChHHHHHhccc-CCHHHHHHHHHHHHHHhc
Q 044999          212 ----------------------------------------RARRLLVELGVIPGLVELFHI-GDWTTKLVAGNTLGVVAA  250 (461)
Q Consensus       212 ----------------------------------------~~~~~~~~~~~i~~L~~ll~~-~~~~~~~~a~~~L~~l~~  250 (461)
                                                              +..+.+.+.|+++.|+.+|.+ +++.+++.|+++|+|++.
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~  313 (457)
T 1xm9_A          234 EYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTA  313 (457)
T ss_dssp             HHTC----------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT
T ss_pred             ccccccccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhcc
Confidence                                                    112234456778889999984 478999999999999998


Q ss_pred             Cccc------hhhhhhcCCHHHHHHHhCCCChhHHHHHHHHHHHhccCcccHHHHH----HHHHHHhccCC------HHH
Q 044999          251 HVEY------ITPVAEAGAIPLYAELLQGPDSTGKEISEDVFCILAVSEANANAIA----EHLVRILREGD------NEA  314 (461)
Q Consensus       251 ~~~~------~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~i~----~~l~~ll~~~~------~~~  314 (461)
                      ....      +..+.+.|++|.|++++.+++.+++..|+++|.|++.++..+..+.    +.|+++|.+++      +++
T Consensus       314 ~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~~~~~~i~~~~i~~Lv~lL~~~~~~~~~~~~v  393 (457)
T 1xm9_A          314 SKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDI  393 (457)
T ss_dssp             CSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGGGHHHHHHHTHHHHHHTTTSCCSCSTTHHHH
T ss_pred             CcCcchHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCHHHHHHHHHhhhHHHHHhccCCCCCCCCcHHH
Confidence            6322      2334467999999999999999999999999999999888877665    99999998764      468


Q ss_pred             HHHHHHHHHHhhC-CCCchhHHhhcCCHHHHHHhhcCC-CHHHHHHHHHHHHHhcCChhhH
Q 044999          315 NAAAADVLWDLAG-YKHSVPVIRNSGAIPILVNLLRGE-NDEVREKVSGAIAQLSYNEADR  373 (461)
Q Consensus       315 ~~~a~~~L~~l~~-~~~~~~~l~~~g~i~~L~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~  373 (461)
                      ...++.+|.++.. +++....+.+.|+++.|++++.++ ++.+++.|.++|.++..+.+.|
T Consensus       394 ~~~~l~~l~ni~~~~~~~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~~L~~~~~~~~l~  454 (457)
T 1xm9_A          394 LSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSSKELQ  454 (457)
T ss_dssp             HHHHHHHHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSSSTTCS
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHHcCCCcHHHHHHHHHHHHHHHcchhhh
Confidence            8899999999985 567788888999999999999999 9999999999999999866543

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}

Probab=100.00  E-value=1.4e-34  Score=274.11  Aligned_cols=353  Identities=17%  Similarity=0.187  Sum_probs=282.0

Q ss_pred             hHHHHHHHhhcCCHHHHHHHHHHHHhhc-CCCchhHHHh--hHHHHHHhhccCCC------CCCCcHHHHHHHHHHHHHH
Q 044999           11 AFNRFEQAVVSGSEALQVKALTKLARVS-KFAPQDILAA--TIPILARLLGENNF------SGNLTRSIQQAAAYCLKQI   81 (461)
Q Consensus        11 ~~~~l~~ll~~~~~~~~~~a~~~l~~la-~~~~~~~l~~--~i~~l~~~l~~~~~------~~~~~~~~~~~a~~~L~~l   81 (461)
                      .++.+...+.+.|+.   ..++.|..++ ++..+..+.+  ++|.|+++|+....      ++..+++.|..|+++|.++
T Consensus        33 ~~~~l~~~~~~~~~~---~~~~~ll~~~~~~~~~~~~~~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni  109 (458)
T 3nmz_A           33 MVYSLLSMLGTHDKD---DMSRTLLAMSSSQDSCISMRQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNI  109 (458)
T ss_dssp             ------------CCH---HHHHHHHHHHSSTTHHHHHHHHTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCCHH---HHHHHHHHHHcCCcHHHHHHHCCCHHHHHHHHhcccccccccccccCCHHHHHHHHHHHHHH
Confidence            345666667676666   3677888888 7777777777  99999999996100      0003467888899999999


Q ss_pred             HhcCCchhHHHHHhcCCH----------HHHHhcCCCCC--HH-----HHH-------HHHHHHHHHhccChhhHHHHHH
Q 044999           82 ASQADGALATEIGQSGVI----------NSVLRLFPQSD--DS-----FRT-------VLVKCLRVFVTFGNENRVIVAR  137 (461)
Q Consensus        82 ~~~~~~~~~~~~~~~~~l----------~~L~~ll~~~~--~~-----~~~-------~~~~~l~~l~~~~~~~~~~~~~  137 (461)
                      +.+ .++......+.+.+          +.+++++.+..  .+     ++.       +|+++|.+++. ++++|..+.+
T Consensus       110 ~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qAv~aL~nls~-~~e~R~~i~~  187 (458)
T 3nmz_A          110 IHS-QPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSF-DEEHRHAMNE  187 (458)
T ss_dssp             HHH-SCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSSCCCSCC--CCCTTTTHHHHHHHHHHTT-SHHHHHHHHH
T ss_pred             Hcc-CcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccccccCCccchhhHHHHHHHHHHHHhcC-CHHHHHHHHH
Confidence            997 44444555566666          55666666542  11     333       89999999985 5899999999


Q ss_pred             cCCHHHHHHHhcC-----------CChHHHHHHHHHHHHhhCC-hHHHHHHHhc-CCHHHHHHHHcCCCHHHHHHHHHHH
Q 044999          138 NGGLEIVIDLLNS-----------CNDGTRRYLLEILSALALL-REVRRVLICL-GGLRYLVEAVSFGSMVSRERACQAI  204 (461)
Q Consensus       138 ~g~i~~L~~ll~~-----------~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~-~~l~~l~~~l~~~~~~~~~~a~~~L  204 (461)
                      .|+++.|+.++..           .++.++..|+++|.+++.+ ++.+..+... |.++.|+.+|.+++++++..|+++|
T Consensus       188 ~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL  267 (458)
T 3nmz_A          188 LGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVL  267 (458)
T ss_dssp             TTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHH
Confidence            9999999999952           2357899999999999954 4466666554 5599999999999999999999999


Q ss_pred             HHhhcC-c-hhHHHHHhcCChHHHHHhc-ccCCHHHHHHHHHHHHHHhc-Cccchhhhh-hcCCHHHHHHHhCCCCh---
Q 044999          205 GLLAVT-G-RARRLLVELGVIPGLVELF-HIGDWTTKLVAGNTLGVVAA-HVEYITPVA-EAGAIPLYAELLQGPDS---  276 (461)
Q Consensus       205 ~~l~~~-~-~~~~~~~~~~~i~~L~~ll-~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~-~~g~i~~L~~ll~~~~~---  276 (461)
                      +||+.. + +++..+.+.|+++.|+.+| .+.++.+++.++.+|+||+. .++++..+. ..|+++.|+.++.+.+.   
T Consensus       268 ~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~  347 (458)
T 3nmz_A          268 RNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNT  347 (458)
T ss_dssp             HHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSST
T ss_pred             HHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcch
Confidence            999985 3 4588899999999999975 56788999999999999999 567888888 78999999999987754   


Q ss_pred             -hHHHHHHHHHHHhcc----CcccHHHHH-----HHHHHHhccCCHHHHHHHHHHHHHhh-CCCCchhHHhhcCCHHHHH
Q 044999          277 -TGKEISEDVFCILAV----SEANANAIA-----EHLVRILREGDNEANAAAADVLWDLA-GYKHSVPVIRNSGAIPILV  345 (461)
Q Consensus       277 -~~~~~a~~~L~~l~~----~~~~~~~i~-----~~l~~ll~~~~~~~~~~a~~~L~~l~-~~~~~~~~l~~~g~i~~L~  345 (461)
                       ++++.++++|.|++.    .++++..+.     +.|+.+|++++.++++.|+++|+|++ .+++++..+.+.|+++.|+
T Consensus       348 ~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv  427 (458)
T 3nmz_A          348 LAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLK  427 (458)
T ss_dssp             THHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHH
Confidence             489999999999984    677777665     99999999999999999999999999 5688999999999999999


Q ss_pred             HhhcCCCHHHHHHHHHHHHHhcC
Q 044999          346 NLLRGENDEVREKVSGAIAQLSY  368 (461)
Q Consensus       346 ~ll~~~~~~v~~~a~~~L~~l~~  368 (461)
                      +++.++++.+++.|+++|.||+.
T Consensus       428 ~LL~s~~~~v~~~Aa~AL~nL~~  450 (458)
T 3nmz_A          428 NLIHSKHKMIAMGSAAALRNLMA  450 (458)
T ss_dssp             TTTTCSSHHHHHHHHHHHHHHHT
T ss_pred             HHHhCCCHHHHHHHHHHHHHHHc
Confidence            99999999999999999999998

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A

Probab=99.98  E-value=5.3e-31  Score=242.65  Aligned_cols=260  Identities=20%  Similarity=0.234  Sum_probs=233.6

Q ss_pred             HHHHHHHHHHHHhhCChHHHHHHHhcCCHHHHHHHHcC-----------CCHHHHHHHHHHHHHhhcCchh-HHHHHh-c
Q 044999          154 GTRRYLLEILSALALLREVRRVLICLGGLRYLVEAVSF-----------GSMVSRERACQAIGLLAVTGRA-RRLLVE-L  220 (461)
Q Consensus       154 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~~l~~-----------~~~~~~~~a~~~L~~l~~~~~~-~~~~~~-~  220 (461)
                      .....|+++|.+++.++++|..+++.|+++.|+.+|..           .+++++..|+++|.|++..++. +..+.. .
T Consensus        47 ~~~~~A~~aL~nls~d~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~  126 (354)
T 3nmw_A           47 HQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMK  126 (354)
T ss_dssp             GTHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHCH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcC
Confidence            55668999999999999999999999999999999952           2468999999999999988875 666655 4


Q ss_pred             CChHHHHHhcccCCHHHHHHHHHHHHHHhcC--ccchhhhhhcCCHHHHHHH-hCCCChhHHHHHHHHHHHhcc-CcccH
Q 044999          221 GVIPGLVELFHIGDWTTKLVAGNTLGVVAAH--VEYITPVAEAGAIPLYAEL-LQGPDSTGKEISEDVFCILAV-SEANA  296 (461)
Q Consensus       221 ~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~--~~~~~~~~~~g~i~~L~~l-l~~~~~~~~~~a~~~L~~l~~-~~~~~  296 (461)
                      |+++.|+.+|+++++++++.|+++|+||+..  ++++..+.+.|++|.|+++ +++.++++++.++.+|.||+. .++++
T Consensus       127 GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk  206 (354)
T 3nmw_A          127 GCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENK  206 (354)
T ss_dssp             HHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             CcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChhhh
Confidence            5699999999999999999999999999985  5688999999999999997 466789999999999999998 66777


Q ss_pred             HHHH------HHHHHHhccCCH----HHHHHHHHHHHHhhC----CCCchhHHhhcCCHHHHHHhhcCCCHHHHHHHHHH
Q 044999          297 NAIA------EHLVRILREGDN----EANAAAADVLWDLAG----YKHSVPVIRNSGAIPILVNLLRGENDEVREKVSGA  362 (461)
Q Consensus       297 ~~i~------~~l~~ll~~~~~----~~~~~a~~~L~~l~~----~~~~~~~l~~~g~i~~L~~ll~~~~~~v~~~a~~~  362 (461)
                      ..+.      +.|+++|+++++    ++++.|+++|+|++.    +++++..+.+.|+++.|+++|.+++..+++.|+++
T Consensus       207 ~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~a  286 (354)
T 3nmw_A          207 ADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGT  286 (354)
T ss_dssp             HHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred             HHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHHHHH
Confidence            6665      999999987754    589999999999995    78889999999999999999999999999999999


Q ss_pred             HHHhcC-ChhhHHHHHhCCChHHHHHhccCCCHHHHHHHHHHHHHhcCCCcc
Q 044999          363 IAQLSY-NEADRVALADAGAVPIMIELLHDESEELRDNAAESLINFSEDPLQ  413 (461)
Q Consensus       363 L~~l~~-~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~  413 (461)
                      |+||+. +++++..+.+.|++|.|+++++++++.+++.|+++|.||+.+...
T Consensus       287 L~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~~  338 (354)
T 3nmw_A          287 LWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPA  338 (354)
T ss_dssp             HHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCCG
T ss_pred             HHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCHH
Confidence            999996 899999999999999999999999999999999999999877543

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A

Probab=99.97  E-value=5e-30  Score=236.13  Aligned_cols=260  Identities=15%  Similarity=0.166  Sum_probs=230.1

Q ss_pred             HHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHhcCCC-----------CCHHHHHHHHHHHHHHhccChhhHHHHHHcC
Q 044999           71 QQAAAYCLKQIASQADGALATEIGQSGVINSVLRLFPQ-----------SDDSFRTVLVKCLRVFVTFGNENRVIVARNG  139 (461)
Q Consensus        71 ~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~ll~~-----------~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g  139 (461)
                      +..|+++|.+++.  +++++..+.+.|+++.|+++|..           .++.++..++++|.+++..+..++..+...+
T Consensus        49 ~~~A~~aL~nls~--d~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~  126 (354)
T 3nmw_A           49 ICPAVCVLMKLSF--DEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMK  126 (354)
T ss_dssp             HHHHHHHHHHHHT--SHHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHCH
T ss_pred             HHHHHHHHHHHcC--CHHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcC
Confidence            3359999999999  78999999999999999999952           2467899999999999988877888886654


Q ss_pred             -CHHHHHHHhcCCChHHHHHHHHHHHHhhC--ChHHHHHHHhcCCHHHHHHHH-cCCCHHHHHHHHHHHHHhhcCc-hhH
Q 044999          140 -GLEIVIDLLNSCNDGTRRYLLEILSALAL--LREVRRVLICLGGLRYLVEAV-SFGSMVSRERACQAIGLLAVTG-RAR  214 (461)
Q Consensus       140 -~i~~L~~ll~~~~~~~~~~a~~~L~~l~~--~~~~~~~~~~~~~l~~l~~~l-~~~~~~~~~~a~~~L~~l~~~~-~~~  214 (461)
                       .++.|+++|+++++++++.|+.+|.+++.  +++++..+.+.|+++.|+++| .+.+.++++.++.+|+||+... +++
T Consensus       127 GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk  206 (354)
T 3nmw_A          127 GCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENK  206 (354)
T ss_dssp             HHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             CcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChhhh
Confidence             49999999999999999999999999995  477899999999999999975 6678899999999999999944 557


Q ss_pred             HHHH-hcCChHHHHHhcccCCH----HHHHHHHHHHHHHhc----CccchhhhhhcCCHHHHHHHhCCCChhHHHHHHHH
Q 044999          215 RLLV-ELGVIPGLVELFHIGDW----TTKLVAGNTLGVVAA----HVEYITPVAEAGAIPLYAELLQGPDSTGKEISEDV  285 (461)
Q Consensus       215 ~~~~-~~~~i~~L~~ll~~~~~----~~~~~a~~~L~~l~~----~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~  285 (461)
                      ..+. ..|+++.|+.++.++++    ++++.|+++|+|++.    .++++..+.+.|+++.|+.+|++++.++++     
T Consensus       207 ~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~-----  281 (354)
T 3nmw_A          207 ADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVS-----  281 (354)
T ss_dssp             HHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHH-----
T ss_pred             HHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHH-----
Confidence            7777 79999999999996654    589999999999996    588899999999999999999988888877     


Q ss_pred             HHHhccCcccHHHHHHHHHHHhccCCHHHHHHHHHHHHHhh-CCCCchhHHhhcCCHHHHHHhhcCCCHHHHHHHHHHHH
Q 044999          286 FCILAVSEANANAIAEHLVRILREGDNEANAAAADVLWDLA-GYKHSVPVIRNSGAIPILVNLLRGENDEVREKVSGAIA  364 (461)
Q Consensus       286 L~~l~~~~~~~~~i~~~l~~ll~~~~~~~~~~a~~~L~~l~-~~~~~~~~l~~~g~i~~L~~ll~~~~~~v~~~a~~~L~  364 (461)
                                                     .|+++|+|++ .+++++..+.+.|+++.|++++.++++.+++.|+++|.
T Consensus       282 -------------------------------~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~  330 (354)
T 3nmw_A          282 -------------------------------NACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALR  330 (354)
T ss_dssp             -------------------------------HHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHH
T ss_pred             -------------------------------HHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHH
Confidence                                           7777777777 45778888999999999999999999999999999999


Q ss_pred             HhcC
Q 044999          365 QLSY  368 (461)
Q Consensus       365 ~l~~  368 (461)
                      +|+.
T Consensus       331 nL~~  334 (354)
T 3nmw_A          331 NLMA  334 (354)
T ss_dssp             HHHT
T ss_pred             HHHc
Confidence            9999

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}

Probab=99.96  E-value=9e-27  Score=228.20  Aligned_cols=389  Identities=15%  Similarity=0.130  Sum_probs=307.8

Q ss_pred             HHhHHHHHHHhhc-CCHHHHHHHHHHHHhhc-CCCchhHHHh-hHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHhcC
Q 044999            9 EEAFNRFEQAVVS-GSEALQVKALTKLARVS-KFAPQDILAA-TIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQA   85 (461)
Q Consensus         9 ~~~~~~l~~ll~~-~~~~~~~~a~~~l~~la-~~~~~~~l~~-~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~   85 (461)
                      ++..+.+.+.+.+ .+..+.......|...| +...|..+.+ .++-|.+.++.     +   .++..|+..|+.+...+
T Consensus       254 e~~~~~l~~~~~~~~~~~~~~a~L~lLsaACi~~~cR~~I~~~~~~~L~~~l~~-----~---~ir~lAavvL~KL~~~~  325 (778)
T 3opb_A          254 KGLSKLFKKRVFEEQDLQFTKELLRLLSSACIDETMRTYITENYLQLLERSLNV-----E---DVQIYSALVLVKTWSFT  325 (778)
T ss_dssp             TTHHHHHHHHHHSSCCHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHTTS-----G---GGHHHHHHHHHHHTGGG
T ss_pred             ccHHHHHHHHHhcccchHHHHHHHHHHHHHhCCcHHHHHHHHhHHHHHHHHhcc-----H---HHHHHHHHHHHHHhcCC
Confidence            3445666666654 45666677777888888 7778888877 88999988864     2   26777999999998752


Q ss_pred             CchhHHHHHhcCCHHHHHhcCCCCCHHHHHHHHHHHHHHhccChhhHHHHHHc-CCHHHHHHHhcC-CChHHHHHHHHHH
Q 044999           86 DGALATEIGQSGVINSVLRLFPQSDDSFRTVLVKCLRVFVTFGNENRVIVARN-GGLEIVIDLLNS-CNDGTRRYLLEIL  163 (461)
Q Consensus        86 ~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~-g~i~~L~~ll~~-~~~~~~~~a~~~L  163 (461)
                      .. ....+  ....+.+.+++.+++.+.+..++..|..++. +++.|..+++. |.++.|++++++ .+..+...++.+|
T Consensus       326 ~~-~~~si--~~La~~~~~~L~~~~~~~~~~AvEgLaYLSl-~~~VKe~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL  401 (778)
T 3opb_A          326 KL-TCINL--KQLSEIFINAISRRIVPKVEMSVEALAYLSL-KASVKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIM  401 (778)
T ss_dssp             TC-TTCCH--HHHHHHHHHHTTTCCHHHHHHHHHHHHHHTT-SSHHHHHHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHH
T ss_pred             CC-CcCcH--HHHHHHHHHHHhcCCccHHHHHHHHHHHHhC-CHHHHHHHHhCHHHHHHHHHHHhCCCCchHHHHHHHHH
Confidence            11 11111  1245677788888777779999999999995 45778777765 459999999985 6778999999999


Q ss_pred             HHhhCChH---------------------------------------HHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHH
Q 044999          164 SALALLRE---------------------------------------VRRVLICLGGLRYLVEAVSFGSMVSRERACQAI  204 (461)
Q Consensus       164 ~~l~~~~~---------------------------------------~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L  204 (461)
                      .|++...+                                       ++..+.+.|+++.|+.++.++++.++..++++|
T Consensus       402 ~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL  481 (778)
T 3opb_A          402 ANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKREMHNLSPNCKQQVVRII  481 (778)
T ss_dssp             HHTTCCCCCCCCCCC------------------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHH
T ss_pred             HHhcCCCcccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHH
Confidence            99984221                                       345667889999999999999999999999999


Q ss_pred             HHhhcCchhHHHHHhcCChHHHHHhcccCCHH---HHHHHHHHHHHHhcCccchhhhhh---cCCHHHHHHHhCC-CCh-
Q 044999          205 GLLAVTGRARRLLVELGVIPGLVELFHIGDWT---TKLVAGNTLGVVAAHVEYITPVAE---AGAIPLYAELLQG-PDS-  276 (461)
Q Consensus       205 ~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~---~~~~a~~~L~~l~~~~~~~~~~~~---~g~i~~L~~ll~~-~~~-  276 (461)
                      .+++.+.+++..+++.|+++.|+.++.+.+..   .+..|+.+|.+++...+....+..   .|+++.|+.+|.. +.. 
T Consensus       482 ~nLS~d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~  561 (778)
T 3opb_A          482 YNITRSKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVD  561 (778)
T ss_dssp             HHHHTSGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCS
T ss_pred             HHHcCCHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCcc
Confidence            99999988899999999999999999977554   899999999999976433332211   3889999999983 211 


Q ss_pred             ------------hHHHHHHHHHHHhccCcc-----cHHHHH------HHHHHHhccCCHHHHHHHHHHHHHhhCCCCch-
Q 044999          277 ------------TGKEISEDVFCILAVSEA-----NANAIA------EHLVRILREGDNEANAAAADVLWDLAGYKHSV-  332 (461)
Q Consensus       277 ------------~~~~~a~~~L~~l~~~~~-----~~~~i~------~~l~~ll~~~~~~~~~~a~~~L~~l~~~~~~~-  332 (461)
                                  --+..|+.+|.||+..++     .+..++      +.+.+++.++++.++..|+++++||+.+++.. 
T Consensus       562 ~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e~i~  641 (778)
T 3opb_A          562 DNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSHPLTIA  641 (778)
T ss_dssp             SCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSGGGTG
T ss_pred             cccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCcHHHH
Confidence                        127789999999988763     244444      88999999999999999999999999988764 


Q ss_pred             hHHhhcC------CHHHHHHhhcCCCHHHHHHHHHHHHHhcC-ChhhHHHHHhC-CChHHHHHhccC--CCHHHHHHHHH
Q 044999          333 PVIRNSG------AIPILVNLLRGENDEVREKVSGAIAQLSY-NEADRVALADA-GAVPIMIELLHD--ESEELRDNAAE  402 (461)
Q Consensus       333 ~~l~~~g------~i~~L~~ll~~~~~~v~~~a~~~L~~l~~-~~~~~~~~~~~-~~i~~L~~ll~~--~~~~~~~~a~~  402 (461)
                      ..+...+      .++.|+.++..++.++|..|+++|++++. ++.....+.+. ++++.++.++++  ++++++..++.
T Consensus       642 ~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~~~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~  721 (778)
T 3opb_A          642 AKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTIPLIAKELLTKKELIENAIQVFADQIDDIELRQRLLM  721 (778)
T ss_dssp             GGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred             HHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCChHHHHHHHHccccHHHHHHHHhccCCCHHHHHHHHH
Confidence            3444322      37899999999999999999999999975 88888888887 799999999988  89999999999


Q ss_pred             HHHHhcC
Q 044999          403 SLINFSE  409 (461)
Q Consensus       403 ~L~~l~~  409 (461)
                      ++.|++.
T Consensus       722 ~l~NL~~  728 (778)
T 3opb_A          722 LFFGLFE  728 (778)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHHH
Confidence            9999986

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}

Probab=99.96  E-value=3.4e-26  Score=224.13  Aligned_cols=411  Identities=14%  Similarity=0.065  Sum_probs=307.9

Q ss_pred             HHHHHHHhhc--CCCchhHHHh---hHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHH
Q 044999           29 KALTKLARVS--KFAPQDILAA---TIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQADGALATEIGQSGVINSVL  103 (461)
Q Consensus        29 ~a~~~l~~la--~~~~~~~l~~---~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~  103 (461)
                      .+..++..+-  -+.....+.-   ..+.+.+.+.+    + .+......++..|...|.  ++.++..+ ..++++.|.
T Consensus       231 ~~~~~l~~lfPi~p~~~s~lfl~e~~~~~l~~~~~~----~-~~~~~~~a~L~lLsaACi--~~~cR~~I-~~~~~~~L~  302 (778)
T 3opb_A          231 IIVKTLSELYPSLTTLCSEIFLTKGLSKLFKKRVFE----E-QDLQFTKELLRLLSSACI--DETMRTYI-TENYLQLLE  302 (778)
T ss_dssp             HHHHHHHHHTTTTHHHHHHHHSTTTHHHHHHHHHHS----S-CCHHHHHHHHHHHHHHCC--SHHHHHHH-HHHHHHHHH
T ss_pred             HHHHHHHHHhcCCHHHHHHHHccccHHHHHHHHHhc----c-cchHHHHHHHHHHHHHhC--CcHHHHHH-HHhHHHHHH
Confidence            3444444444  3333333332   67777777765    3 234445556666666665  77787666 566779999


Q ss_pred             hcCCCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHhhCChHHHHHHHhc-CCH
Q 044999          104 RLFPQSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLNSCNDGTRRYLLEILSALALLREVRRVLICL-GGL  182 (461)
Q Consensus       104 ~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~-~~l  182 (461)
                      +.+++  ..++..++..+..+..........+.+  ..+.+.+++.+++.+.+..|++.|..++.+++.++.+.+. +++
T Consensus       303 ~~l~~--~~ir~lAavvL~KL~~~~~~~~~si~~--La~~~~~~L~~~~~~~~~~AvEgLaYLSl~~~VKe~L~~d~~~L  378 (778)
T 3opb_A          303 RSLNV--EDVQIYSALVLVKTWSFTKLTCINLKQ--LSEIFINAISRRIVPKVEMSVEALAYLSLKASVKIMIRSNESFT  378 (778)
T ss_dssp             HHTTS--GGGHHHHHHHHHHHTGGGTCTTCCHHH--HHHHHHHHTTTCCHHHHHHHHHHHHHHTTSSHHHHHHHHCHHHH
T ss_pred             HHhcc--HHHHHHHHHHHHHHhcCCCCCcCcHHH--HHHHHHHHHhcCCccHHHHHHHHHHHHhCCHHHHHHHHhCHHHH
Confidence            99876  466888888888776543222111211  4566777888877667999999999999999999998875 569


Q ss_pred             HHHHHHHcC-CCHHHHHHHHHHHHHhhcCch---------------------------------------hHHHHHhcCC
Q 044999          183 RYLVEAVSF-GSMVSRERACQAIGLLAVTGR---------------------------------------ARRLLVELGV  222 (461)
Q Consensus       183 ~~l~~~l~~-~~~~~~~~a~~~L~~l~~~~~---------------------------------------~~~~~~~~~~  222 (461)
                      +.|+.++++ .+..+.+.++.+|.|++...+                                       .+..+.+.|+
T Consensus       379 ~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGv  458 (778)
T 3opb_A          379 EILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTEL  458 (778)
T ss_dssp             HHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC------------------CCTHHHHHHHHHHHHHHHTTTTTH
T ss_pred             HHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCcC
Confidence            999999995 677899999999999987443                                       2345677899


Q ss_pred             hHHHHHhcccCCHHHHHHHHHHHHHHhcCccchhhhhhcCCHHHHHHHhCCCChh---HHHHHHHHHHHhccCcccHH--
Q 044999          223 IPGLVELFHIGDWTTKLVAGNTLGVVAAHVEYITPVAEAGAIPLYAELLQGPDST---GKEISEDVFCILAVSEANAN--  297 (461)
Q Consensus       223 i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~ll~~~~~~---~~~~a~~~L~~l~~~~~~~~--  297 (461)
                      ++.|+.++.++++.+++.++++|.+++.++++|..+++.|+++.|+.++.+.+..   .+..|+.+|.++....+...  
T Consensus       459 Ip~Lv~Ll~S~s~~~re~A~~aL~nLS~d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f  538 (778)
T 3opb_A          459 ISFLKREMHNLSPNCKQQVVRIIYNITRSKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIF  538 (778)
T ss_dssp             HHHHHHHGGGSCHHHHHHHHHHHHHHHTSGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHS
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHc
Confidence            9999999999999999999999999999999999999999999999999887543   89999999999964333222  


Q ss_pred             ------HHHHHHHHHhcc--CCH------------HHHHHHHHHHHHhhCCCC-----chhHHhhc-CCHHHHHHhhcCC
Q 044999          298 ------AIAEHLVRILRE--GDN------------EANAAAADVLWDLAGYKH-----SVPVIRNS-GAIPILVNLLRGE  351 (461)
Q Consensus       298 ------~i~~~l~~ll~~--~~~------------~~~~~a~~~L~~l~~~~~-----~~~~l~~~-g~i~~L~~ll~~~  351 (461)
                            ..+++|+.+|..  ...            -.+..|+.+|.||+..++     .+..+++. |+++.|.+++.+.
T Consensus       539 ~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~  618 (778)
T 3opb_A          539 KKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDE  618 (778)
T ss_dssp             SSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCS
T ss_pred             CCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCC
Confidence                  222999999972  211            237799999999998763     36778885 9999999999999


Q ss_pred             CHHHHHHHHHHHHHhcCChhhH-HHHHhCC------ChHHHHHhccCCCHHHHHHHHHHHHHhc-CCCcchHHHHHh-hC
Q 044999          352 NDEVREKVSGAIAQLSYNEADR-VALADAG------AVPIMIELLHDESEELRDNAAESLINFS-EDPLQHERISEA-IG  422 (461)
Q Consensus       352 ~~~v~~~a~~~L~~l~~~~~~~-~~~~~~~------~i~~L~~ll~~~~~~~~~~a~~~L~~l~-~~~~~~~~l~~~-~~  422 (461)
                      ++.+++.|+++++||+.+++.. ..+.+.+      .++.|+.++.+++.++|..|+++|.|++ .++.....+.+. ++
T Consensus       619 n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~~~ia~~ll~~~~g  698 (778)
T 3opb_A          619 NVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTIPLIAKELLTKKEL  698 (778)
T ss_dssp             SHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHTTCHHH
T ss_pred             CHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCChHHHHHHHHcccc
Confidence            9999999999999999987754 3443322      3789999999999999999999999995 566655566554 45


Q ss_pred             CchHHhHHHHHHHhhhchhHHHHHHHHHhHhhhc
Q 044999          423 IPSFQSMQSRLTRIRASDDLMARSMRRMSIEQLT  456 (461)
Q Consensus       423 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~  456 (461)
                      ++.+..+++   ..+  +++.++..+-..++++.
T Consensus       699 i~~Ll~lL~---~~~--~~~~l~~R~~~~l~NL~  727 (778)
T 3opb_A          699 IENAIQVFA---DQI--DDIELRQRLLMLFFGLF  727 (778)
T ss_dssp             HHHHHHHHH---HTT--TCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHh---ccC--CCHHHHHHHHHHHHHHH
Confidence            555554444   222  46677777777777776

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}

Probab=99.95  E-value=2.1e-26  Score=204.97  Aligned_cols=239  Identities=23%  Similarity=0.338  Sum_probs=217.1

Q ss_pred             CCHHHHHHHhcCCChHHHHHHHHHHHHhh-CChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCchh-HHH
Q 044999          139 GGLEIVIDLLNSCNDGTRRYLLEILSALA-LLREVRRVLICLGGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRA-RRL  216 (461)
Q Consensus       139 g~i~~L~~ll~~~~~~~~~~a~~~L~~l~-~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~-~~~  216 (461)
                      |+++.|++++.++++.++..|+.+|.+++ .+++.+..+.+.|+++.++.++.+++++++..++++|++++...+. +..
T Consensus         2 ~~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~   81 (252)
T 4hxt_A            2 NDVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKA   81 (252)
T ss_dssp             CHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred             CcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHH
Confidence            57899999999999999999999999999 5566899999999999999999999999999999999999998554 889


Q ss_pred             HHhcCChHHHHHhcccCCHHHHHHHHHHHHHHhcC-ccchhhhhhcCCHHHHHHHhCCCChhHHHHHHHHHHHhccCccc
Q 044999          217 LVELGVIPGLVELFHIGDWTTKLVAGNTLGVVAAH-VEYITPVAEAGAIPLYAELLQGPDSTGKEISEDVFCILAVSEAN  295 (461)
Q Consensus       217 ~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~  295 (461)
                      +.+.|+++.|+.++++++++++..++++|.+++.. ++.+..+.+.|+++.++.+++++++.++.               
T Consensus        82 ~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~---------------  146 (252)
T 4hxt_A           82 IVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQK---------------  146 (252)
T ss_dssp             HHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHH---------------
T ss_pred             HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHH---------------
Confidence            99999999999999999999999999999999954 88888999999999999999988888887               


Q ss_pred             HHHHHHHHHHHhccCCHHHHHHHHHHHHHhhCC-CCchhHHhhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcC-ChhhH
Q 044999          296 ANAIAEHLVRILREGDNEANAAAADVLWDLAGY-KHSVPVIRNSGAIPILVNLLRGENDEVREKVSGAIAQLSY-NEADR  373 (461)
Q Consensus       296 ~~~i~~~l~~ll~~~~~~~~~~a~~~L~~l~~~-~~~~~~l~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~-~~~~~  373 (461)
                                           .++++|++++.. +.....+.+.|+++.|+.++.++++.++..++++|++++. ++..+
T Consensus       147 ---------------------~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~  205 (252)
T 4hxt_A          147 ---------------------EAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAI  205 (252)
T ss_dssp             ---------------------HHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHH
T ss_pred             ---------------------HHHHHHHHHHcCCHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHH
Confidence                                 666666666653 4445677889999999999999999999999999999999 88889


Q ss_pred             HHHHhCCChHHHHHhccCCCHHHHHHHHHHHHHhcCCCcc
Q 044999          374 VALADAGAVPIMIELLHDESEELRDNAAESLINFSEDPLQ  413 (461)
Q Consensus       374 ~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~  413 (461)
                      ..+.+.|+++.|+++++++++.++..|+++|.||+..+..
T Consensus       206 ~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~  245 (252)
T 4hxt_A          206 KAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKSGGWL  245 (252)
T ss_dssp             HHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHTCBC
T ss_pred             HHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHcCCCc
Confidence            9999999999999999999999999999999999877654

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}

Probab=99.95  E-value=6.7e-26  Score=201.63  Aligned_cols=238  Identities=20%  Similarity=0.282  Sum_probs=220.7

Q ss_pred             hHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHhcCCCCCHHHHHHHHHHHHHHhccC
Q 044999           49 TIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQADGALATEIGQSGVINSVLRLFPQSDDSFRTVLVKCLRVFVTFG  128 (461)
Q Consensus        49 ~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~l~~~~  128 (461)
                      .++.++++|++      ++++++..|+++|.+++.. ++..+..+.+.|+++.|+++++++++.++..++.++.+++..+
T Consensus         3 ~i~~L~~~L~~------~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~   75 (252)
T 4hxt_A            3 DVEKLVKLLTS------TDSETQKEAARDLAEIASG-PASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGP   75 (252)
T ss_dssp             HHHHHHHHTTC------SCHHHHHHHHHHHHHHHTS-CHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC
T ss_pred             cHHHHHHHHcC------CCHHHHHHHHHHHHHHhcC-CcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence            47899999986      4578888999999999985 5568889999999999999999999999999999999999888


Q ss_pred             hhhHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHhh-CChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHh
Q 044999          129 NENRVIVARNGGLEIVIDLLNSCNDGTRRYLLEILSALA-LLREVRRVLICLGGLRYLVEAVSFGSMVSRERACQAIGLL  207 (461)
Q Consensus       129 ~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~-~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l  207 (461)
                      ++++..+.+.|+++.++.++++.++.++..|+.+|.+++ .+++.+..+.+.|+++.+++++.++++.++..++++|+++
T Consensus        76 ~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l  155 (252)
T 4hxt_A           76 DEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANI  155 (252)
T ss_dssp             HHHHHHHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence            899999999999999999999999999999999999999 7889999999999999999999999999999999999999


Q ss_pred             hcCchh-HHHHHhcCChHHHHHhcccCCHHHHHHHHHHHHHHhcC-ccchhhhhhcCCHHHHHHHhCCCChhHHHHHHHH
Q 044999          208 AVTGRA-RRLLVELGVIPGLVELFHIGDWTTKLVAGNTLGVVAAH-VEYITPVAEAGAIPLYAELLQGPDSTGKEISEDV  285 (461)
Q Consensus       208 ~~~~~~-~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~  285 (461)
                      +...+. +..+.+.|+++.|+.++.++++.++..++++|.+++.. ++.+..+.+.|+++.|+.+++++++++++.|+++
T Consensus       156 ~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~  235 (252)
T 4hxt_A          156 ASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRA  235 (252)
T ss_dssp             TTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHH
Confidence            997776 68889999999999999999999999999999999986 7778888899999999999999999999999999


Q ss_pred             HHHhccCc
Q 044999          286 FCILAVSE  293 (461)
Q Consensus       286 L~~l~~~~  293 (461)
                      |.|++...
T Consensus       236 L~~l~~~~  243 (252)
T 4hxt_A          236 LENIKSGG  243 (252)
T ss_dssp             HHHHHHTC
T ss_pred             HHHHHcCC
Confidence            99986544

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}

Probab=99.95  E-value=2.6e-26  Score=204.31  Aligned_cols=235  Identities=23%  Similarity=0.276  Sum_probs=212.2

Q ss_pred             CCHHHHHHHhcCCChHHHHHHHHHHHHhh-CChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCchh-HHH
Q 044999          139 GGLEIVIDLLNSCNDGTRRYLLEILSALA-LLREVRRVLICLGGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRA-RRL  216 (461)
Q Consensus       139 g~i~~L~~ll~~~~~~~~~~a~~~L~~l~-~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~-~~~  216 (461)
                      ..++.+++.|.++++.++..|+..|.++. .+++.+..+.+.|+++.|+.++.+++++++..++++|++++...+. +..
T Consensus        12 ~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~   91 (252)
T 4db8_A           12 SELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQA   91 (252)
T ss_dssp             CSHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred             chHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence            46889999999999999999999997765 6777788899999999999999999999999999999999986554 889


Q ss_pred             HHhcCChHHHHHhcccCCHHHHHHHHHHHHHHhcCccch-hhhhhcCCHHHHHHHhCCCChhHHHHHHHHHHHhccCccc
Q 044999          217 LVELGVIPGLVELFHIGDWTTKLVAGNTLGVVAAHVEYI-TPVAEAGAIPLYAELLQGPDSTGKEISEDVFCILAVSEAN  295 (461)
Q Consensus       217 ~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~-~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~  295 (461)
                      +.+.|+++.|+.+++++++.++..++++|++++.+++.+ ..+.+.|+++.|+.++.++++.++.               
T Consensus        92 i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~---------------  156 (252)
T 4db8_A           92 VIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQ---------------  156 (252)
T ss_dssp             HHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHH---------------
T ss_pred             HHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHH---------------
Confidence            999999999999999999999999999999999997777 8888999999999999988888887               


Q ss_pred             HHHHHHHHHHHhccCCHHHHHHHHHHHHHhhCC-CCchhHHhhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcC-ChhhH
Q 044999          296 ANAIAEHLVRILREGDNEANAAAADVLWDLAGY-KHSVPVIRNSGAIPILVNLLRGENDEVREKVSGAIAQLSY-NEADR  373 (461)
Q Consensus       296 ~~~i~~~l~~ll~~~~~~~~~~a~~~L~~l~~~-~~~~~~l~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~-~~~~~  373 (461)
                                           .|+++|++++.. ++....+.+.|+++.|++++.++++.++..++++|++++. +++.+
T Consensus       157 ---------------------~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~  215 (252)
T 4db8_A          157 ---------------------EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQK  215 (252)
T ss_dssp             ---------------------HHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHH
T ss_pred             ---------------------HHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHH
Confidence                                 666666666643 4556677889999999999999999999999999999997 88889


Q ss_pred             HHHHhCCChHHHHHhccCCCHHHHHHHHHHHHHhcC
Q 044999          374 VALADAGAVPIMIELLHDESEELRDNAAESLINFSE  409 (461)
Q Consensus       374 ~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~  409 (461)
                      ..+.+.|+++.|++++++++++++..|+++|.+|+.
T Consensus       216 ~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l~~  251 (252)
T 4db8_A          216 QAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS  251 (252)
T ss_dssp             HHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTTC-
T ss_pred             HHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHHhc
Confidence            999999999999999999999999999999999975

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}

Probab=99.95  E-value=5.6e-26  Score=202.18  Aligned_cols=236  Identities=21%  Similarity=0.216  Sum_probs=216.1

Q ss_pred             hHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHhcCCCCCHHHHHHHHHHHHHHhccC
Q 044999           49 TIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQADGALATEIGQSGVINSVLRLFPQSDDSFRTVLVKCLRVFVTFG  128 (461)
Q Consensus        49 ~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~l~~~~  128 (461)
                      ..+.+++.|++      +|+++|..|+++|.++... +......+.+.|+++.|+++|+++++.++..++.++.+++..+
T Consensus        13 ~~~~~~~~L~s------~~~~~~~~a~~~L~~~l~~-~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~   85 (252)
T 4db8_A           13 ELPQMTQQLNS------DDMQEQLSATRKFSQILSD-GNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG   85 (252)
T ss_dssp             SHHHHHHHHHS------SCSSHHHHHHHHHHHHHHH-HHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSC
T ss_pred             hHHHHHHHHcC------CCHHHHHHHHHHHHHHHcC-CCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC
Confidence            57889999987      3456899999999877664 6677888999999999999999999999999999999999888


Q ss_pred             hhhHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHhhCChHHH-HHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHh
Q 044999          129 NENRVIVARNGGLEIVIDLLNSCNDGTRRYLLEILSALALLREVR-RVLICLGGLRYLVEAVSFGSMVSRERACQAIGLL  207 (461)
Q Consensus       129 ~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~-~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l  207 (461)
                      ++++..+.+.|+++.|+.+++++++.++..|+.+|.+++.+++.+ ..+.+.|+++.|+.++.++++.++..++++|+++
T Consensus        86 ~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l  165 (252)
T 4db8_A           86 NEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNI  165 (252)
T ss_dssp             HHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence            899999999999999999999999999999999999999877777 8899999999999999999999999999999999


Q ss_pred             hcCchh-HHHHHhcCChHHHHHhcccCCHHHHHHHHHHHHHHhcC-ccchhhhhhcCCHHHHHHHhCCCChhHHHHHHHH
Q 044999          208 AVTGRA-RRLLVELGVIPGLVELFHIGDWTTKLVAGNTLGVVAAH-VEYITPVAEAGAIPLYAELLQGPDSTGKEISEDV  285 (461)
Q Consensus       208 ~~~~~~-~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~  285 (461)
                      +...+. ...+.+.|+++.|+.++.++++.++..++++|++++.. ++.+..+.+.|+++.|+.++.+.+++++..|+.+
T Consensus       166 ~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~  245 (252)
T 4db8_A          166 ASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEA  245 (252)
T ss_dssp             TTSCHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHH
T ss_pred             HcCChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHH
Confidence            987766 77888999999999999999999999999999999976 6778888899999999999999999999999999


Q ss_pred             HHHhcc
Q 044999          286 FCILAV  291 (461)
Q Consensus       286 L~~l~~  291 (461)
                      |.|++.
T Consensus       246 L~~l~~  251 (252)
T 4db8_A          246 LEKLQS  251 (252)
T ss_dssp             HHTTC-
T ss_pred             HHHHhc
Confidence            998864

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A

Probab=99.91  E-value=9.1e-23  Score=176.00  Aligned_cols=197  Identities=22%  Similarity=0.200  Sum_probs=183.8

Q ss_pred             hcCCHHHHHhcCCCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHhh-CChHHH
Q 044999           95 QSGVINSVLRLFPQSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLNSCNDGTRRYLLEILSALA-LLREVR  173 (461)
Q Consensus        95 ~~~~l~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~-~~~~~~  173 (461)
                      ..++.+.|+++++++++.++..+++++.+++..+++.+..+.+.|+++.|+++|+++++.++..|+.+|.+++ .+++.+
T Consensus        10 ~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~   89 (210)
T 4db6_A           10 HGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQI   89 (210)
T ss_dssp             ---CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred             ccchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHH
Confidence            4578899999999999999999999999999888899999999999999999999999999999999999999 678889


Q ss_pred             HHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCchh-HHHHHhcCChHHHHHhcccCCHHHHHHHHHHHHHHhcC-
Q 044999          174 RVLICLGGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRA-RRLLVELGVIPGLVELFHIGDWTTKLVAGNTLGVVAAH-  251 (461)
Q Consensus       174 ~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~-~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~-  251 (461)
                      ..+.+.|+++.++.++.++++.++..|+++|++++...+. ...+.+.|+++.|+.++.++++.++..++++|.+++.. 
T Consensus        90 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~  169 (210)
T 4db6_A           90 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG  169 (210)
T ss_dssp             HHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSC
T ss_pred             HHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC
Confidence            9999999999999999999999999999999999987766 77888999999999999999999999999999999998 


Q ss_pred             ccchhhhhhcCCHHHHHHHhCCCChhHHHHHHHHHHHhcc
Q 044999          252 VEYITPVAEAGAIPLYAELLQGPDSTGKEISEDVFCILAV  291 (461)
Q Consensus       252 ~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~  291 (461)
                      ++.+..+.+.|+++.|+.++.++++++++.|+.+|.+|+.
T Consensus       170 ~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~  209 (210)
T 4db6_A          170 NEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS  209 (210)
T ss_dssp             HHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred             cHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence            7888889999999999999999999999999999998864

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A

Probab=99.90  E-value=9.6e-22  Score=169.56  Aligned_cols=195  Identities=22%  Similarity=0.214  Sum_probs=181.8

Q ss_pred             hHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHhcCCCCCHHHHHHHHHHHHHHhccC
Q 044999           49 TIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQADGALATEIGQSGVINSVLRLFPQSDDSFRTVLVKCLRVFVTFG  128 (461)
Q Consensus        49 ~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~l~~~~  128 (461)
                      ..+.|+.+|++      +|+.++..|+++|.+++.. ++..+..+.+.|+++.|+++|+++++.++..+++++.+++..+
T Consensus        13 ~~~~l~~LL~s------~~~~v~~~a~~~L~~l~~~-~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~   85 (210)
T 4db6_A           13 ELPQMVQQLNS------PDQQELQSALRKLSQIASG-GNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG   85 (210)
T ss_dssp             CHHHHHHHTTC------SCHHHHHHHHHHHHHHHTS-CHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC
T ss_pred             hhHHHHHHhcC------CCHHHHHHHHHHHHHHHcC-CHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC
Confidence            67889999986      5678999999999999975 7788889999999999999999999999999999999999888


Q ss_pred             hhhHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHhh-CChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHh
Q 044999          129 NENRVIVARNGGLEIVIDLLNSCNDGTRRYLLEILSALA-LLREVRRVLICLGGLRYLVEAVSFGSMVSRERACQAIGLL  207 (461)
Q Consensus       129 ~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~-~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l  207 (461)
                      ++++..+.+.|+++.|+.++++.++.++..|+.+|.+++ .+++.+..+.+.|+++.|+.++.++++.++..++++|+++
T Consensus        86 ~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l  165 (210)
T 4db6_A           86 NEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNI  165 (210)
T ss_dssp             HHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence            899999999999999999999999999999999999999 6677778889999999999999999999999999999999


Q ss_pred             hcCchh-HHHHHhcCChHHHHHhcccCCHHHHHHHHHHHHHHhc
Q 044999          208 AVTGRA-RRLLVELGVIPGLVELFHIGDWTTKLVAGNTLGVVAA  250 (461)
Q Consensus       208 ~~~~~~-~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~  250 (461)
                      +...+. +..+.+.|+++.|+.++.++++++++.|+.+|.+++.
T Consensus       166 ~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~  209 (210)
T 4db6_A          166 ASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS  209 (210)
T ss_dssp             HTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred             HcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence            998555 8888999999999999999999999999999999985

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}

Probab=99.89  E-value=4.7e-22  Score=170.18  Aligned_cols=194  Identities=13%  Similarity=0.159  Sum_probs=172.8

Q ss_pred             CHHHHHhcCCCCCH--HHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHhhC-ChHHHH
Q 044999           98 VINSVLRLFPQSDD--SFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLNSCNDGTRRYLLEILSALAL-LREVRR  174 (461)
Q Consensus        98 ~l~~L~~ll~~~~~--~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~-~~~~~~  174 (461)
                      .++.++++|+++++  +++..++.++.+++..+++++..+.+.|+++.|+++|+++++.+++.|+++|.+++. +++++.
T Consensus         9 ~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk~   88 (233)
T 3tt9_A            9 TLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKL   88 (233)
T ss_dssp             CHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             cHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHH
Confidence            58999999999988  888899999999999898999999999999999999999999999999999999995 789999


Q ss_pred             HHHhcCCHHHHHHHHc-CCCHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhcc----------------cCCHHH
Q 044999          175 VLICLGGLRYLVEAVS-FGSMVSRERACQAIGLLAVTGRARRLLVELGVIPGLVELFH----------------IGDWTT  237 (461)
Q Consensus       175 ~~~~~~~l~~l~~~l~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~----------------~~~~~~  237 (461)
                      .+.+.|+++.|+++|. +++.++++.++.+|++|+..+..+..+.+. +++.|+.++.                ..++++
T Consensus        89 ~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~~~-~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~v  167 (233)
T 3tt9_A           89 EVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMITE-ALLTLTENIIIPFSGWPEGDYPKANGLLDFDI  167 (233)
T ss_dssp             HHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHHHH-HHHHHCCCCCHHHHCCCGGGCCCCCTTCCHHH
T ss_pred             HHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHHhc-cHHHHHHHHhccccCCcccccccccccchHHH
Confidence            9999999999999998 468999999999999999998888888775 6899988663                126689


Q ss_pred             HHHHHHHHHHHhcC-ccchhhhhhc-CCHHHHHHHhCCC------ChhHHHHHHHHHHHhccC
Q 044999          238 KLVAGNTLGVVAAH-VEYITPVAEA-GAIPLYAELLQGP------DSTGKEISEDVFCILAVS  292 (461)
Q Consensus       238 ~~~a~~~L~~l~~~-~~~~~~~~~~-g~i~~L~~ll~~~------~~~~~~~a~~~L~~l~~~  292 (461)
                      ++.|..+|+||+.. +++|..+.+. |+|+.|+.+++..      +...+++|..+|.||+..
T Consensus       168 ~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~  230 (233)
T 3tt9_A          168 FYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ  230 (233)
T ss_dssp             HHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence            99999999999986 6899999886 6789999998742      557889999999988764

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}

Probab=99.89  E-value=4.9e-22  Score=170.08  Aligned_cols=197  Identities=18%  Similarity=0.190  Sum_probs=173.4

Q ss_pred             hHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHhcCCCCCHHHHHHHHHHHHHHhccC
Q 044999           49 TIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQADGALATEIGQSGVINSVLRLFPQSDDSFRTVLVKCLRVFVTFG  128 (461)
Q Consensus        49 ~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~l~~~~  128 (461)
                      .++.++++|++    +++++++|..|+.+|.+++.. ++.++..+.+.|+++.|+++|++++++++..++++|.+++..+
T Consensus         9 ~i~~lV~lL~s----~~~~~~~q~~Aa~~l~~L~~~-~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~   83 (233)
T 3tt9_A            9 TLERAVSMLEA----DHMLPSRISAAATFIQHECFQ-KSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFED   83 (233)
T ss_dssp             CHHHHHHTCCS----SCCCHHHHHHHHHHHHHHHHH-CHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTC
T ss_pred             cHHHHHHHhCC----CCchHHHHHHHHHHHHHHHcC-CcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCC
Confidence            68999999997    554457888899999999975 7889999999999999999999999999999999999999888


Q ss_pred             hhhHHHHHHcCCHHHHHHHhc-CCChHHHHHHHHHHHHhhCChHHHHHHHhcCCHHHHHHHHc----------------C
Q 044999          129 NENRVIVARNGGLEIVIDLLN-SCNDGTRRYLLEILSALALLREVRRVLICLGGLRYLVEAVS----------------F  191 (461)
Q Consensus       129 ~~~~~~~~~~g~i~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~~l~----------------~  191 (461)
                      ++++..+.+.|+++.|+++|. +.+..+++.|+.+|++++..++++..+.+. +++.|+.++.                .
T Consensus        84 ~~nk~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~~~-~i~~Lv~ll~~p~sG~~~~~~~~~~~~  162 (233)
T 3tt9_A           84 NDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMITE-ALLTLTENIIIPFSGWPEGDYPKANGL  162 (233)
T ss_dssp             HHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHHHH-HHHHHCCCCCHHHHCCCGGGCCCCCTT
T ss_pred             HHHHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHHhc-cHHHHHHHHhccccCCccccccccccc
Confidence            899999999999999999998 578899999999999999999999888874 6888887552                1


Q ss_pred             CCHHHHHHHHHHHHHhhcCc-hhHHHHHhc-CChHHHHHhccc------CCHHHHHHHHHHHHHHhcC
Q 044999          192 GSMVSRERACQAIGLLAVTG-RARRLLVEL-GVIPGLVELFHI------GDWTTKLVAGNTLGVVAAH  251 (461)
Q Consensus       192 ~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~-~~i~~L~~ll~~------~~~~~~~~a~~~L~~l~~~  251 (461)
                      .+.++++.|..+|+||+..+ +.|+.|.+. |+++.|+.+++.      .+...++.++.+|+||+..
T Consensus       163 ~~~~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~  230 (233)
T 3tt9_A          163 LDFDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ  230 (233)
T ss_dssp             CCHHHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred             chHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence            26799999999999999876 458889885 668999999984      2568999999999999875

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A

Probab=99.87  E-value=3.3e-19  Score=178.46  Aligned_cols=419  Identities=13%  Similarity=0.078  Sum_probs=307.2

Q ss_pred             HHHhHHHHHHHhhcCCHHHHHHHHHHHHhhc-CCCchhHHHhhHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHhcCC
Q 044999            8 WEEAFNRFEQAVVSGSEALQVKALTKLARVS-KFAPQDILAATIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQAD   86 (461)
Q Consensus         8 ~~~~~~~l~~ll~~~~~~~~~~a~~~l~~la-~~~~~~~l~~~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~   86 (461)
                      +++.++.+..++.++++.+|..|+.+++.++ ...........+|.+..+++.      +++.++..|+.+|..++..-+
T Consensus       162 ~~~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d------~~~~vr~~a~~~l~~l~~~~~  235 (588)
T 1b3u_A          162 KAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASD------EQDSVRLLAVEACVNIAQLLP  235 (588)
T ss_dssp             HHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHHHHHHTHHHHHHHHHTC------SCHHHHTTHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcHHhHHHHHHHHHHHHhcC------CcHHHHHHHHHHHHHHHHhCC
Confidence            5667788888889999999999999999999 444333333388888888875      446677779999999987411


Q ss_pred             chhHHHHHhcCCHHHHHhcCCCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHh
Q 044999           87 GALATEIGQSGVINSVLRLFPQSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLNSCNDGTRRYLLEILSAL  166 (461)
Q Consensus        87 ~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l  166 (461)
                      +    .......++.+.+++++.++.++..++.++..++.....   .......++.+..++++.++.+|..|+.++..+
T Consensus       236 ~----~~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~  308 (588)
T 1b3u_A          236 Q----EDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGP---EITKTDLVPAFQNLMKDCEAEVRAAASHKVKEF  308 (588)
T ss_dssp             H----HHHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCH---HHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred             H----HHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCc---ccchhHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Confidence            1    112334678888899999999999999999988752211   123345688999999999999999999999998


Q ss_pred             hC--ChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhcccCCHHHHHHHHHH
Q 044999          167 AL--LREVRRVLICLGGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRARRLLVELGVIPGLVELFHIGDWTTKLVAGNT  244 (461)
Q Consensus       167 ~~--~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~  244 (461)
                      +.  .++.+....-...++.+..++++.++.+|..++.+++.++..-....  .....++.+..++++++++++..++.+
T Consensus       309 ~~~~~~~~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~--~~~~l~p~l~~~l~d~~~~Vr~~a~~~  386 (588)
T 1b3u_A          309 CENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDN--TIEHLLPLFLAQLKDECPEVRLNIISN  386 (588)
T ss_dssp             HHTSCTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCHHH--HHHHTHHHHHHHHTCSCHHHHHHHHTT
T ss_pred             HHHhChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhHhH--HHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence            83  22222222334578888999999999999999999999875433221  123478889999999999999999999


Q ss_pred             HHHHhcCccchhhhhhcCCHHHHHHHhCCCChhHHHHHHHHHHHhccC--c-ccHHHHHHHHHHHhccCCHHHHHHHHHH
Q 044999          245 LGVVAAHVEYITPVAEAGAIPLYAELLQGPDSTGKEISEDVFCILAVS--E-ANANAIAEHLVRILREGDNEANAAAADV  321 (461)
Q Consensus       245 L~~l~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~--~-~~~~~i~~~l~~ll~~~~~~~~~~a~~~  321 (461)
                      +..+...-...  .....++|.+..++.+.++.+|..++.++..++..  + .....+.+.+...+.+.++.+|..|+.+
T Consensus       387 l~~l~~~~~~~--~~~~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~  464 (588)
T 1b3u_A          387 LDCVNEVIGIR--QLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSN  464 (588)
T ss_dssp             CHHHHHHSCHH--HHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHGGGCSSHHHHHHHHHH
T ss_pred             HHHHHHhcCHH--HHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence            98887641111  11234588899999999999999999999988532  1 1223455889999999999999999999


Q ss_pred             HHHhhCCCCchhHHhhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhccCCCHHHHHHHH
Q 044999          322 LWDLAGYKHSVPVIRNSGAIPILVNLLRGENDEVREKVSGAIAQLSYNEADRVALADAGAVPIMIELLHDESEELRDNAA  401 (461)
Q Consensus       322 L~~l~~~~~~~~~l~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~  401 (461)
                      +..++..-...  .....++|.|..++.+++..+|..++.++..++..-+  ........+|.|..+++++++.+|..++
T Consensus       465 l~~l~~~~~~~--~~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~~--~~~~~~~~~~~l~~~l~d~~~~Vr~~a~  540 (588)
T 1b3u_A          465 LKKLVEKFGKE--WAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCG--QDITTKHMLPTVLRMAGDPVANVRFNVA  540 (588)
T ss_dssp             HHHHHHHHCHH--HHHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHH--HHHHHHHTHHHHHHGGGCSCHHHHHHHH
T ss_pred             HHHHHHHhCch--hHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHhhCCCCCchHHHHHH
Confidence            99998542211  2234688889999888899999999999999986221  1122335789999999999999999999


Q ss_pred             HHHHHhcCCCcchHHHHHhhCCchHHhHHHHHHHhhhchhHHHHHHHHHhHhhhc
Q 044999          402 ESLINFSEDPLQHERISEAIGIPSFQSMQSRLTRIRASDDLMARSMRRMSIEQLT  456 (461)
Q Consensus       402 ~~L~~l~~~~~~~~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~  456 (461)
                      ++|..+...-+..  +..    +.+...+.   ++..+.+..+|..+..++..+.
T Consensus       541 ~~l~~l~~~~~~~--~~~----~~~~p~l~---~l~~d~d~~vr~~a~~al~~l~  586 (588)
T 1b3u_A          541 KSLQKIGPILDNS--TLQ----SEVKPILE---KLTQDQDVDVKYFAQEALTVLS  586 (588)
T ss_dssp             HHHHHHGGGSCHH--HHH----HHHHHHHH---HHTTCSSHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhchh--hhH----HHHHHHHH---HHcCCCchhHHHHHHHHHHHhh
Confidence            9999998653321  111    22222222   2334457889999998887764

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*

Probab=99.87  E-value=2.9e-20  Score=166.54  Aligned_cols=180  Identities=15%  Similarity=0.103  Sum_probs=166.4

Q ss_pred             HHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHh-cCCCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHh
Q 044999           70 IQQAAAYCLKQIASQADGALATEIGQSGVINSVLR-LFPQSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLL  148 (461)
Q Consensus        70 ~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~-ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll  148 (461)
                      ....|+..|..++.  +.++...+.+.|+++.+++ +|+++++.++..+++++.+++..++.++..+.+.|+++.|+.+|
T Consensus        56 ~k~~Al~~L~~lv~--~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL  133 (296)
T 1xqr_A           56 EREGALELLADLCE--NMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLL  133 (296)
T ss_dssp             HHHHHHHHHHHHHT--SHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHh--ChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHH
Confidence            44449999999998  7778888999999999999 99999999999999999999999999999999999999999999


Q ss_pred             cC-CChHHHHHHHHHHHHhh-CChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCchh-HHHHHhcCChHH
Q 044999          149 NS-CNDGTRRYLLEILSALA-LLREVRRVLICLGGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRA-RRLLVELGVIPG  225 (461)
Q Consensus       149 ~~-~~~~~~~~a~~~L~~l~-~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~-~~~~~~~~~i~~  225 (461)
                      ++ +++.++..|+++|.+++ .+++..+.+.+.|+++.|+.+|.+++..++..|+++|.+++...+. +..+.+.|+++.
T Consensus       134 ~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~  213 (296)
T 1xqr_A          134 DRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQ  213 (296)
T ss_dssp             HHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHH
T ss_pred             ccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHH
Confidence            86 47899999999999999 5667778899999999999999999999999999999999887655 889999999999


Q ss_pred             HHHhcccCCHHHHHHHHHHHHHHhcC
Q 044999          226 LVELFHIGDWTTKLVAGNTLGVVAAH  251 (461)
Q Consensus       226 L~~ll~~~~~~~~~~a~~~L~~l~~~  251 (461)
                      |+.+|.+++..+++.++.+|+++...
T Consensus       214 Lv~LL~~~d~~v~~~al~aL~~l~~~  239 (296)
T 1xqr_A          214 LVALVRTEHSPFHEHVLGALCSLVTD  239 (296)
T ss_dssp             HHHHHTSCCSTHHHHHHHHHHHHHTT
T ss_pred             HHHHHcCCChhHHHHHHHHHHHHHhC
Confidence            99999999999999999999999987

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*

Probab=99.87  E-value=1.8e-20  Score=167.82  Aligned_cols=182  Identities=15%  Similarity=0.149  Sum_probs=164.5

Q ss_pred             HHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHH-hcccCCHHHHHHHHHHHHHHhcC-ccchhhhhhcCCHHHHHHHh
Q 044999          194 MVSRERACQAIGLLAVTGRARRLLVELGVIPGLVE-LFHIGDWTTKLVAGNTLGVVAAH-VEYITPVAEAGAIPLYAELL  271 (461)
Q Consensus       194 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~-ll~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~g~i~~L~~ll  271 (461)
                      .+-+..|+..|.+++...++...+...|+++.|+. +|.++++.++..|+++|++++.+ +..+..+++.|+++.|+.++
T Consensus        54 ~e~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL  133 (296)
T 1xqr_A           54 QQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLL  133 (296)
T ss_dssp             HHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHH
Confidence            36788999999999999888888899999999999 99999999999999999999987 77888999999999999999


Q ss_pred             CCC-ChhHHHHHHHHHHHhccCcccHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhCC-CCchhHHhhcCCHHHHHHhhc
Q 044999          272 QGP-DSTGKEISEDVFCILAVSEANANAIAEHLVRILREGDNEANAAAADVLWDLAGY-KHSVPVIRNSGAIPILVNLLR  349 (461)
Q Consensus       272 ~~~-~~~~~~~a~~~L~~l~~~~~~~~~i~~~l~~ll~~~~~~~~~~a~~~L~~l~~~-~~~~~~l~~~g~i~~L~~ll~  349 (461)
                      +++ +..+++                                    .|+++|.+++.+ +...+.+.+.|+++.|+.+++
T Consensus       134 ~~~~~~~v~~------------------------------------~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~  177 (296)
T 1xqr_A          134 DRDACDTVRV------------------------------------KALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQ  177 (296)
T ss_dssp             HHCSCHHHHH------------------------------------HHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHH
T ss_pred             ccCCCHHHHH------------------------------------HHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHc
Confidence            853 666766                                    777777788754 455667888999999999999


Q ss_pred             CCCHHHHHHHHHHHHHhcC-ChhhHHHHHhCCChHHHHHhccCCCHHHHHHHHHHHHHhcCCC
Q 044999          350 GENDEVREKVSGAIAQLSY-NEADRVALADAGAVPIMIELLHDESEELRDNAAESLINFSEDP  411 (461)
Q Consensus       350 ~~~~~v~~~a~~~L~~l~~-~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~  411 (461)
                      ++++.++..|+++|.+++. +++.+..+++.|+++.|+.++.++++.++..++.+|.+|+...
T Consensus       178 ~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~~  240 (296)
T 1xqr_A          178 QQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDF  240 (296)
T ss_dssp             SSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTTC
T ss_pred             CCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHHHHHHHcCCChhHHHHHHHHHHHHHhCC
Confidence            9999999999999999998 8899999999999999999999999999999999999998774

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A

Probab=99.83  E-value=7.4e-16  Score=147.49  Aligned_cols=440  Identities=13%  Similarity=0.102  Sum_probs=310.5

Q ss_pred             cHHHhHHHHHHHhhcC-CHHHHHHHHHHHHhhcCCCchhHHHh-hHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHhc
Q 044999            7 NWEEAFNRFEQAVVSG-SEALQVKALTKLARVSKFAPQDILAA-TIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQ   84 (461)
Q Consensus         7 ~~~~~~~~l~~ll~~~-~~~~~~~a~~~l~~la~~~~~~~l~~-~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~   84 (461)
                      .-++.++.|..-+++. -.+-|+.|+..|..++. +.+..+.. +++.|+..|+.    +.+|.+..+.+..+|.++...
T Consensus        18 s~~etI~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk-~y~~~Vg~~~l~~li~~L~~----d~~D~e~v~~~LetL~~l~~~   92 (651)
T 3grl_A           18 TEAETIQKLCDRVASSTLLDDRRNAVRALKSLSK-KYRLEVGIQAMEHLIHVLQT----DRSDSEIIGYALDTLYNIISN   92 (651)
T ss_dssp             CHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTT-TTTTHHHHHTHHHHHHHHHS----CTTCHHHHHHHHHHHHHHHCC
T ss_pred             ChhhHHHHHHHHHhhccchhHHHHHHHHHHHHHH-HhHHHhhhhhHHHHHHHHhc----ccccHHHHHHHHHHHHHHhCC
Confidence            4678888888877765 46889999999999992 33445555 99999999998    888999999999999998764


Q ss_pred             CCch----------------hHHHH-HhcCCHHHHHhcCCCCCHHHHHHHHHHHHHHhccChh-hHHHHHHc-CCHHHHH
Q 044999           85 ADGA----------------LATEI-GQSGVINSVLRLFPQSDDSFRTVLVKCLRVFVTFGNE-NRVIVARN-GGLEIVI  145 (461)
Q Consensus        85 ~~~~----------------~~~~~-~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~-~~~~~~~~-g~i~~L~  145 (461)
                      ++++                +.+.+ .+.+.++.|+.+|++.+..++..+..++..++...++ .++.+... +|++.|+
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv  172 (651)
T 3grl_A           93 DEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLM  172 (651)
T ss_dssp             C--------------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHH
T ss_pred             CCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHH
Confidence            2211                22233 3457799999999999999999999999988887766 78888854 9999999


Q ss_pred             HHhcCCChHHHHHHHHHHHHhh-CChHHHHHHHhcCCHHHHHHHHcCCCH----HHHHHHHHHHHHhhcCchh-HHHHHh
Q 044999          146 DLLNSCNDGTRRYLLEILSALA-LLREVRRVLICLGGLRYLVEAVSFGSM----VSRERACQAIGLLAVTGRA-RRLLVE  219 (461)
Q Consensus       146 ~ll~~~~~~~~~~a~~~L~~l~-~~~~~~~~~~~~~~l~~l~~~l~~~~~----~~~~~a~~~L~~l~~~~~~-~~~~~~  219 (461)
                      .+|++..+.+|..++..|.+++ .+.+.++.+.-.|+++.|+.++..+..    .+...++.++.+|...+.. +..|.+
T Consensus       173 ~lL~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrE  252 (651)
T 3grl_A          173 DLLADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKE  252 (651)
T ss_dssp             GGGGCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHhCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHH
Confidence            9999999999999999999999 566666666778999999999987643    7889999999999999885 999999


Q ss_pred             cCChHHHHHhcccCCHH------HH---HHHHHHHHHHhcC-------ccchhhhhhcCCHHHHHHHhCCC--ChhHHHH
Q 044999          220 LGVIPGLVELFHIGDWT------TK---LVAGNTLGVVAAH-------VEYITPVAEAGAIPLYAELLQGP--DSTGKEI  281 (461)
Q Consensus       220 ~~~i~~L~~ll~~~~~~------~~---~~a~~~L~~l~~~-------~~~~~~~~~~g~i~~L~~ll~~~--~~~~~~~  281 (461)
                      .|+++.|..++..+++.      ..   ..++.+++-+...       ..++..+.+.|+++.+++++.+.  ...++..
T Consensus       253 t~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~  332 (651)
T 3grl_A          253 GSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILTE  332 (651)
T ss_dssp             TTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHH
T ss_pred             cCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHH
Confidence            99999999999844321      11   2355556665543       24577888999999999998765  6788999


Q ss_pred             HHHHHHHhc-cCcccHHHHH----------HH----HHHHhccC-CHHHHHHHHHHHHHhhC-CCCchhHHhhc------
Q 044999          282 SEDVFCILA-VSEANANAIA----------EH----LVRILREG-DNEANAAAADVLWDLAG-YKHSVPVIRNS------  338 (461)
Q Consensus       282 a~~~L~~l~-~~~~~~~~i~----------~~----l~~ll~~~-~~~~~~~a~~~L~~l~~-~~~~~~~l~~~------  338 (461)
                      |+.+++.+. .++.++..+.          +.    ++.++.+. ...+|.+|+.++..... +++.+..+..+      
T Consensus       333 Al~tla~~irgN~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~~~~lR~Aa~~cl~ay~~~N~~~Q~~i~~~llp~~~  412 (651)
T 3grl_A          333 TINTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQPFVLRCAVLYCFQCFLYKNQKGQGEIVSTLLPSTI  412 (651)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHCEESSSSCEEHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTSSCCC
T ss_pred             HHHHHHHHHhCCHHHHHHHhhccCCCCCCcChHHHHHHHHhcccccHHHHHHHHHHHHHHHhCCHHHHHHHHHhcCCccc
Confidence            999999985 4555566655          33    44445544 57899999999998885 44455455432      


Q ss_pred             ----CC---HHHHHHhhcCCCHHHHHHHHHHHHHhcC-ChhhHHHHHhC-----------CChHHHHHhcc-CCCHHHHH
Q 044999          339 ----GA---IPILVNLLRGENDEVREKVSGAIAQLSY-NEADRVALADA-----------GAVPIMIELLH-DESEELRD  398 (461)
Q Consensus       339 ----g~---i~~L~~ll~~~~~~v~~~a~~~L~~l~~-~~~~~~~~~~~-----------~~i~~L~~ll~-~~~~~~~~  398 (461)
                          +.   -..|..-+.+.++.-.-.|+.++.++-. +++.|+.+.+-           -.++.+..++. +.++.++.
T Consensus       413 ~~~~~~~s~g~ll~~~l~s~d~~~~wfAavil~hll~~n~~~K~~~l~v~l~~~~ge~~vtliq~~~~~L~~~~~~ri~v  492 (651)
T 3grl_A          413 DATGNTVSAGQLLCGGLFSTDSLSNWCAAVALAHALQENATQKEQLLRVQLATSIGNPPVSLLQQCTNILSQGSKIQTRV  492 (651)
T ss_dssp             CCTTSSSCHHHHHHHHHTSSCHHHHHHHHHHHHHHHTTCHHHHHHHTTCBCCCCTTCCCCBHHHHHHHHTTTTCCHHHHH
T ss_pred             ccCCCCCCcchhhhhhhccCchHHHHHHHHHHHHHHcCCHHHHHHHHhCcccccCCCCcccHHHHHHHHHhcCCchhHHH
Confidence                00   1124444555566444457777888888 88888777651           12455566553 35566655


Q ss_pred             HHHHHHHHh-cCCCcchHHHHHhhCCchHHhHHHHHHHhhhchhHHHHHHHHHhHh
Q 044999          399 NAAESLINF-SEDPLQHERISEAIGIPSFQSMQSRLTRIRASDDLMARSMRRMSIE  453 (461)
Q Consensus       399 ~a~~~L~~l-~~~~~~~~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~  453 (461)
                      .-...|... ..+|.....|...+  +.++.++..+.+...+.+..++=.+.+.+.
T Consensus       493 gyL~LL~~WL~e~p~AV~dFL~~~--s~l~~L~~~i~~~~~~~~~lvqGL~a~LLG  546 (651)
T 3grl_A          493 GLLMLLCTWLSNCPIAVTHFLHNS--ANVPFLTGQIAENLGEEEQLVQGLCALLLG  546 (651)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHST--THHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCChHHHHHHHcCC--chHHHHHHHHHhccCcchHHHHHHHHHHHH
Confidence            444444433 44454444444322  234444443321111124556655555543

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A

Probab=99.82  E-value=7e-18  Score=168.82  Aligned_cols=380  Identities=13%  Similarity=0.146  Sum_probs=283.2

Q ss_pred             HHHhHHHHHHHhhcCCHHHHHHHHHHHHhhc-CCCchhHHHh-hHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHhcC
Q 044999            8 WEEAFNRFEQAVVSGSEALQVKALTKLARVS-KFAPQDILAA-TIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQA   85 (461)
Q Consensus         8 ~~~~~~~l~~ll~~~~~~~~~~a~~~l~~la-~~~~~~~l~~-~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~   85 (461)
                      +.+.++.+..++++++..+|..|+.+++.++ ... ...... .+|.+.+++..      ++..++..++.+|..++..-
T Consensus       201 ~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~-~~~~~~~~~~~l~~~~~d------~~~~vR~~a~~~l~~l~~~~  273 (588)
T 1b3u_A          201 KSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLP-QEDLEALVMPTLRQAAED------KSWRVRYMVADKFTELQKAV  273 (588)
T ss_dssp             HHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSC-HHHHHHHTHHHHHHHHTC------SSHHHHHHHHHTHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHccC------CCHHHHHHHHHHHHHHHHHh
Confidence            4567888899999999999999999999999 332 233334 88888888864      45667777999999998730


Q ss_pred             CchhHHHHHhcCCHHHHHhcCCCCCHHHHHHHHHHHHHHhccCh-hhHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHH
Q 044999           86 DGALATEIGQSGVINSVLRLFPQSDDSFRTVLVKCLRVFVTFGN-ENRVIVARNGGLEIVIDLLNSCNDGTRRYLLEILS  164 (461)
Q Consensus        86 ~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~-~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~  164 (461)
                      .+    .......++.+.++++++++.++..++.++..++.... +.+........++.+..++++.++.+|..++.+|.
T Consensus       274 ~~----~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~  349 (588)
T 1b3u_A          274 GP----EITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIM  349 (588)
T ss_dssp             CH----HHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGG
T ss_pred             Cc----ccchhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence            11    12234568899999999999999999999998876322 22222233456788889999999999999999999


Q ss_pred             HhhCChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhcccCCHHHHHHHHHH
Q 044999          165 ALALLREVRRVLICLGGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRARRLLVELGVIPGLVELFHIGDWTTKLVAGNT  244 (461)
Q Consensus       165 ~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~  244 (461)
                      .++..-...  ......++.+..++++.++++|..++.++..+........  .....++.+..++.+.++.++..++.+
T Consensus       350 ~l~~~~~~~--~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~--~~~~~lp~l~~~~~d~~~~vr~~~~~~  425 (588)
T 1b3u_A          350 GLSPILGKD--NTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQ--LSQSLLPAIVELAEDAKWRVRLAIIEY  425 (588)
T ss_dssp             GGHHHHCHH--HHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHHH--HHHHHHHHHHHHHTCSSHHHHHHHHHH
T ss_pred             HHHHHhhHh--HHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcCHHH--HHHHHHHHHHHHhcCCCchHHHHHHHH
Confidence            887321111  1123478889999999999999999999988865433211  123467888888889999999999999


Q ss_pred             HHHHhcCccchhhhhhcCCHHHHHHHhCCCChhHHHHHHHHHHHhccCcccH---HHHHHHHHHHhccCCHHHHHHHHHH
Q 044999          245 LGVVAAHVEYITPVAEAGAIPLYAELLQGPDSTGKEISEDVFCILAVSEANA---NAIAEHLVRILREGDNEANAAAADV  321 (461)
Q Consensus       245 L~~l~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~---~~i~~~l~~ll~~~~~~~~~~a~~~  321 (461)
                      +..++..-..  ......+++.+..++.+.++.+|..++.++..+.......   ..+.+.+..++.+.++.+|..++.+
T Consensus       426 l~~l~~~~~~--~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~~~~~~~R~~a~~~  503 (588)
T 1b3u_A          426 MPLLAGQLGV--EFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDPNYLHRMTTLFC  503 (588)
T ss_dssp             HHHHHHHHCG--GGCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHHHHHHHTHHHHHHTTTCSCHHHHHHHHHH
T ss_pred             HHHHHHHcCH--HHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhhCCCHHHHHHHHHH
Confidence            9998864111  1122345888999999999999999999999986433222   2333888888888899999999999


Q ss_pred             HHHhhCCCCchhHHhhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhccCCCHHHHHHHH
Q 044999          322 LWDLAGYKHSVPVIRNSGAIPILVNLLRGENDEVREKVSGAIAQLSYNEADRVALADAGAVPIMIELLHDESEELRDNAA  401 (461)
Q Consensus       322 L~~l~~~~~~~~~l~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~  401 (461)
                      +..++..-.  .......+++.|..++.++++.+|..++++|..++..-+.  .+.....+|.|..++.+.++++|..|+
T Consensus       504 l~~l~~~~~--~~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~--~~~~~~~~p~l~~l~~d~d~~vr~~a~  579 (588)
T 1b3u_A          504 INVLSEVCG--QDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDN--STLQSEVKPILEKLTQDQDVDVKYFAQ  579 (588)
T ss_dssp             HHHHHHHHH--HHHHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSCH--HHHHHHHHHHHHHHTTCSSHHHHHHHH
T ss_pred             HHHHHHhcC--HHHHHHHHHHHHHhhCCCCCchHHHHHHHHHHHHHHHhch--hhhHHHHHHHHHHHcCCCchhHHHHHH
Confidence            999985311  1223346889999999999999999999999999972211  122234578888888899999999999


Q ss_pred             HHHHHhc
Q 044999          402 ESLINFS  408 (461)
Q Consensus       402 ~~L~~l~  408 (461)
                      .++..+.
T Consensus       580 ~al~~l~  586 (588)
T 1b3u_A          580 EALTVLS  586 (588)
T ss_dssp             HHHHHTT
T ss_pred             HHHHHhh
Confidence            9998875

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*

Probab=99.81  E-value=6.5e-18  Score=176.25  Aligned_cols=385  Identities=12%  Similarity=0.042  Sum_probs=268.7

Q ss_pred             HHHHHh---hcCCHHHHHHHHHHHHhhc-C-CC-chhHHHh-hHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHhcCC
Q 044999           14 RFEQAV---VSGSEALQVKALTKLARVS-K-FA-PQDILAA-TIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQAD   86 (461)
Q Consensus        14 ~l~~ll---~~~~~~~~~~a~~~l~~la-~-~~-~~~~l~~-~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~   86 (461)
                      .+..++   .+.++.+|..|+..|.+.. . .. .....+. +-+.+++.|..      +++.++..++.++..++.. +
T Consensus        49 ~l~~il~~~~~~~~~vR~~a~~~Lkn~i~~~w~~~~~~~~~~ik~~ll~~l~~------~~~~vr~~~a~~i~~ia~~-~  121 (852)
T 4fdd_A           49 YLIFVLTKLKSEDEPTRSLSGLILKNNVKAHFQNFPNGVTDFIKSECLNNIGD------SSPLIRATVGILITTIASK-G  121 (852)
T ss_dssp             HHHHHHHTCTTSCHHHHHHHHHHHHHHTTTSGGGCCHHHHHHHHHHHHTTTTC------SSHHHHHHHHHHHHHHHHH-T
T ss_pred             HHHHHHhccCCCChHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHcC------CCHHHHHHHHHHHHHHHHh-c
Confidence            444555   3567888998988888776 2 11 1112222 55566666754      4566777799999999974 2


Q ss_pred             chhHHHHHhcCCHHHHHhcCCCCCHHHHHHHHHHHHHHhccChhhHHHHH----HcCCHHHHHHHhcCCChHHHHHHHHH
Q 044999           87 GALATEIGQSGVINSVLRLFPQSDDSFRTVLVKCLRVFVTFGNENRVIVA----RNGGLEIVIDLLNSCNDGTRRYLLEI  162 (461)
Q Consensus        87 ~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~----~~g~i~~L~~ll~~~~~~~~~~a~~~  162 (461)
                      ...    .-.+.++.|++.+.++++.++..+..++..++...+.....-.    -...++.+++++++.++.+|..|+.+
T Consensus       122 ~~~----~wp~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~a  197 (852)
T 4fdd_A          122 ELQ----NWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVAC  197 (852)
T ss_dssp             TTT----TCTTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHH
T ss_pred             Ccc----ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence            110    1134689999999999999999999999988864322211000    12356677777888899999999999


Q ss_pred             HHHhhCChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCchh--HHHHHhcCChHHHHHhcccCCHHHHHH
Q 044999          163 LSALALLREVRRVLICLGGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRA--RRLLVELGVIPGLVELFHIGDWTTKLV  240 (461)
Q Consensus       163 L~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~--~~~~~~~~~i~~L~~ll~~~~~~~~~~  240 (461)
                      +.++.........-.-.+.++.++..+.++++++|..++.+|..++...+.  ...+  .++++.++..+.+.++.++..
T Consensus       198 L~~~~~~~~~~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l--~~l~~~l~~~~~~~~~~vr~~  275 (852)
T 4fdd_A          198 VNQFIISRTQALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHM--HNIVEYMLQRTQDQDENVALE  275 (852)
T ss_dssp             HHTTTTTTCHHHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGH--HHHHHHHHHHHTCSSHHHHHH
T ss_pred             HHHHHhcccHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHH--HHHHHHHHHHccCCcHHHHHH
Confidence            998874322111001124678888889999999999999999999876654  2222  247788888888999999999


Q ss_pred             HHHHHHHHhcCccchhhhhh--cCCHHHHHHHh-----------CC-----------CChhHHHHHHHHHHHhccCc--c
Q 044999          241 AGNTLGVVAAHVEYITPVAE--AGAIPLYAELL-----------QG-----------PDSTGKEISEDVFCILAVSE--A  294 (461)
Q Consensus       241 a~~~L~~l~~~~~~~~~~~~--~g~i~~L~~ll-----------~~-----------~~~~~~~~a~~~L~~l~~~~--~  294 (461)
                      |+.++..++.....+..+..  ...+|.++..+           .+           .++.++..+..+|..++...  .
T Consensus       276 a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~~  355 (852)
T 4fdd_A          276 ACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRDE  355 (852)
T ss_dssp             HHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHGGG
T ss_pred             HHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhccHH
Confidence            99999999876433332211  14567777776           23           23457889999999886433  2


Q ss_pred             cHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCchhHHhhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCC-hhhH
Q 044999          295 NANAIAEHLVRILREGDNEANAAAADVLWDLAGYKHSVPVIRNSGAIPILVNLLRGENDEVREKVSGAIAQLSYN-EADR  373 (461)
Q Consensus       295 ~~~~i~~~l~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~-~~~~  373 (461)
                      ....+.+.+...+.+.++.+|..|+.+|++++......-.-.-.++++.++.++.++++.|+..+++++++++.. ....
T Consensus       356 ~~~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~  435 (852)
T 4fdd_A          356 LLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQP  435 (852)
T ss_dssp             GHHHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSC
T ss_pred             HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccch
Confidence            333444888888999999999999999999997543211122346789999999999999999999999999872 1110


Q ss_pred             HHHHhCCChHHHHHhccCCCHHHHHHHHHHHHHhcCCC
Q 044999          374 VALADAGAVPIMIELLHDESEELRDNAAESLINFSEDP  411 (461)
Q Consensus       374 ~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~  411 (461)
                      ..-.-.+.++.|++.+.++++.++..|+++|.+++...
T Consensus       436 ~~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~  473 (852)
T 4fdd_A          436 PDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEA  473 (852)
T ss_dssp             TTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHh
Confidence            00111245788888888899999999999999998543

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*

Probab=99.79  E-value=8.7e-17  Score=167.75  Aligned_cols=312  Identities=16%  Similarity=0.161  Sum_probs=224.8

Q ss_pred             CCCcHHHhHHHHHHHhhcCCHHHHHHHHHHHHhhc-CCCchh---H----HHhhHHHHHHhhccCCCCCCCcHHHHHHHH
Q 044999            4 PDTNWEEAFNRFEQAVVSGSEALQVKALTKLARVS-KFAPQD---I----LAATIPILARLLGENNFSGNLTRSIQQAAA   75 (461)
Q Consensus         4 ~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~la-~~~~~~---~----l~~~i~~l~~~l~~~~~~~~~~~~~~~~a~   75 (461)
                      +...|.+.++.+.+.+.+++..++..|+.+|+.++ +.....   .    +...++.+++.+++      +++.++..|+
T Consensus       122 ~~~~wp~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l~~------~~~~vR~~A~  195 (852)
T 4fdd_A          122 ELQNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKH------SSPKIRSHAV  195 (852)
T ss_dssp             TTTTCTTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTTTC------SSHHHHHHHH
T ss_pred             CccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHhcC------CCHHHHHHHH
Confidence            34579999999999999999999999999999999 322111   1    23377888887765      4577888899


Q ss_pred             HHHHHHHhcCCchhHHHHHhcCCHHHHHhcCCCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhcCCChHH
Q 044999           76 YCLKQIASQADGALATEIGQSGVINSVLRLFPQSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLNSCNDGT  155 (461)
Q Consensus        76 ~~L~~l~~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~  155 (461)
                      .+|..+... .... ....-...++.+.+.+.++++.++..++.++..++...++.-.... .+.++.++..+++.++.+
T Consensus       196 ~aL~~~~~~-~~~~-~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l-~~l~~~l~~~~~~~~~~v  272 (852)
T 4fdd_A          196 ACVNQFIIS-RTQA-LMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHM-HNIVEYMLQRTQDQDENV  272 (852)
T ss_dssp             HHHHTTTTT-TCHH-HHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGH-HHHHHHHHHHHTCSSHHH
T ss_pred             HHHHHHHhc-ccHH-HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHH-HHHHHHHHHHccCCcHHH
Confidence            999887763 2211 1111124678888888999999999999999998875543211111 136777888888889999


Q ss_pred             HHHHHHHHHHhhCChHHHHHHHh--cCCHHHHHHHH-----------cC-----------CCHHHHHHHHHHHHHhhcCc
Q 044999          156 RRYLLEILSALALLREVRRVLIC--LGGLRYLVEAV-----------SF-----------GSMVSRERACQAIGLLAVTG  211 (461)
Q Consensus       156 ~~~a~~~L~~l~~~~~~~~~~~~--~~~l~~l~~~l-----------~~-----------~~~~~~~~a~~~L~~l~~~~  211 (461)
                      +..|+..+..++.....+..+..  ...++.++..+           .+           .+..+|..+..++..++...
T Consensus       273 r~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~  352 (852)
T 4fdd_A          273 ALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVY  352 (852)
T ss_dssp             HHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhc
Confidence            99999999999865544432211  12455566655           22           12246888999999988654


Q ss_pred             hhHHHHHhcCChHHHHHhcccCCHHHHHHHHHHHHHHhcCccchhhhhhcCCHHHHHHHhCCCChhHHHHHHHHHHHhcc
Q 044999          212 RARRLLVELGVIPGLVELFHIGDWTTKLVAGNTLGVVAAHVEYITPVAEAGAIPLYAELLQGPDSTGKEISEDVFCILAV  291 (461)
Q Consensus       212 ~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~  291 (461)
                      +. . +. ..+++.+...+.++++.++..|+.+|++++......-.-.-.++++.++..++++++.+|..++.++.+++.
T Consensus       353 ~~-~-~~-~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~  429 (852)
T 4fdd_A          353 RD-E-LL-PHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAH  429 (852)
T ss_dssp             GG-G-GH-HHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHH
T ss_pred             cH-H-HH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence            42 1 11 235778888888899999999999999999863221111224668999999999999999999999999864


Q ss_pred             C------cccHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhC
Q 044999          292 S------EANANAIAEHLVRILREGDNEANAAAADVLWDLAG  327 (461)
Q Consensus       292 ~------~~~~~~i~~~l~~ll~~~~~~~~~~a~~~L~~l~~  327 (461)
                      .      ......+.+.+++.+.+.++.++..|+++|.+++.
T Consensus       430 ~~~~~~~~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~  471 (852)
T 4fdd_A          430 WVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEE  471 (852)
T ss_dssp             HHHHSCTTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred             HhccchHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence            2      12334455888888888899999999999999873

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A

Probab=99.76  E-value=1.1e-14  Score=139.52  Aligned_cols=392  Identities=14%  Similarity=0.079  Sum_probs=284.8

Q ss_pred             HHhHHHHHHHhhc--CCHHHHHHHHHHHHhhc--CCCc-----------------hhHH-Hh--hHHHHHHhhccCCCCC
Q 044999            9 EEAFNRFEQAVVS--GSEALQVKALTKLARVS--KFAP-----------------QDIL-AA--TIPILARLLGENNFSG   64 (461)
Q Consensus         9 ~~~~~~l~~ll~~--~~~~~~~~a~~~l~~la--~~~~-----------------~~~l-~~--~i~~l~~~l~~~~~~~   64 (461)
                      ..+++.++..|..  +|.++...+...|.++.  ++..                 .+.+ .+  .|+.|+++|+.     
T Consensus        59 ~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~-----  133 (651)
T 3grl_A           59 IQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEE-----  133 (651)
T ss_dssp             HHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC--------------CHHHHHHHHHHHSTHHHHHHHHHTTC-----
T ss_pred             hhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcC-----
Confidence            4568999999986  47788888888887655  2221                 1122 22  79999999986     


Q ss_pred             CCcHHHHHHHHHHHHHHHhcCCchhHHHHH-hcCCHHHHHhcCCCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHH
Q 044999           65 NLTRSIQQAAAYCLKQIASQADGALATEIG-QSGVINSVLRLFPQSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEI  143 (461)
Q Consensus        65 ~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~-~~~~l~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~  143 (461)
                       +|..++..++.+|..|+...++..++.+. ..++++.|+.+|++.+..+|..+...+..++.++.+.++.+.-+|+++.
T Consensus       134 -~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~  212 (651)
T 3grl_A          134 -FDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFER  212 (651)
T ss_dssp             -CCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHH
T ss_pred             -ccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHH
Confidence             56677888999999999863445888888 4599999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCCh----HHHHHHHHHHHHhh-CChHHHHHHHhcCCHHHHHHHHcCCCH------HHHH---HHHHHHHHhhc
Q 044999          144 VIDLLNSCND----GTRRYLLEILSALA-LLREVRRVLICLGGLRYLVEAVSFGSM------VSRE---RACQAIGLLAV  209 (461)
Q Consensus       144 L~~ll~~~~~----~~~~~a~~~L~~l~-~~~~~~~~~~~~~~l~~l~~~l~~~~~------~~~~---~a~~~L~~l~~  209 (461)
                      |+.++.....    .+...++.++.++. .+..++..|.+.|+++.|..++..+.+      ....   .++.++.-+..
T Consensus       213 Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~  292 (651)
T 3grl_A          213 LLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVS  292 (651)
T ss_dssp             HHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhC
Confidence            9999976544    78899999999999 677789999999999999999875421      1112   35566666655


Q ss_pred             Cc-------hhHHHHHhcCChHHHHHhcccC--CHHHHHHHHHHHHHHhcC-ccchhhhhhcC---------CHHHHHHH
Q 044999          210 TG-------RARRLLVELGVIPGLVELFHIG--DWTTKLVAGNTLGVVAAH-VEYITPVAEAG---------AIPLYAEL  270 (461)
Q Consensus       210 ~~-------~~~~~~~~~~~i~~L~~ll~~~--~~~~~~~a~~~L~~l~~~-~~~~~~~~~~g---------~i~~L~~l  270 (461)
                      ..       .++..+.+.|+++.+++++..+  ...++..|+.+++.+... +.++..+.+..         ++..|+.+
T Consensus       293 ~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~~~Q~~fa~~~vp~~~~~p~li~lL~~~  372 (651)
T 3grl_A          293 PNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSM  372 (651)
T ss_dssp             TTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHCEESSSSCEEHHHHHHHHH
T ss_pred             CCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCHHHHHHHhhccCCCCCCcChHHHHHHHH
Confidence            42       2377889999999999998855  678899999999998877 66677766432         23334444


Q ss_pred             hCCC-ChhHHHHHHHHHHHhc-cCcccHHHHH------------------HHHHHHhccCCHHHHHHHHHHHHHhhCC-C
Q 044999          271 LQGP-DSTGKEISEDVFCILA-VSEANANAIA------------------EHLVRILREGDNEANAAAADVLWDLAGY-K  329 (461)
Q Consensus       271 l~~~-~~~~~~~a~~~L~~l~-~~~~~~~~i~------------------~~l~~ll~~~~~~~~~~a~~~L~~l~~~-~  329 (461)
                      +.+. ..++|..++.++.... .+++.+..+.                  ..+..-+-+.++-..-.|+.++.++-.+ +
T Consensus       373 ~~~~~~~~lR~Aa~~cl~ay~~~N~~~Q~~i~~~llp~~~~~~~~~~s~g~ll~~~l~s~d~~~~wfAavil~hll~~n~  452 (651)
T 3grl_A          373 VNERQPFVLRCAVLYCFQCFLYKNQKGQGEIVSTLLPSTIDATGNTVSAGQLLCGGLFSTDSLSNWCAAVALAHALQENA  452 (651)
T ss_dssp             TCTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTSSCCCCCTTSSSCHHHHHHHHHTSSCHHHHHHHHHHHHHHHTTCH
T ss_pred             hcccccHHHHHHHHHHHHHHHhCCHHHHHHHHHhcCCcccccCCCCCCcchhhhhhhccCchHHHHHHHHHHHHHHcCCH
Confidence            5544 5788999999988875 4444555554                  2344445556665556677788888754 4


Q ss_pred             CchhHHhh------cC-----CHHHHHHhhcC-CCHHHHHHHHHHHHHhcC-ChhhHHHHHhCCC-hHHHHHhccC--C-
Q 044999          330 HSVPVIRN------SG-----AIPILVNLLRG-ENDEVREKVSGAIAQLSY-NEADRVALADAGA-VPIMIELLHD--E-  392 (461)
Q Consensus       330 ~~~~~l~~------~g-----~i~~L~~ll~~-~~~~v~~~a~~~L~~l~~-~~~~~~~~~~~~~-i~~L~~ll~~--~-  392 (461)
                      +.++.+.+      .|     .++.+..+|.. .+++++..-+..|..... ++.....|...+. ++.|++.+..  + 
T Consensus       453 ~~K~~~l~v~l~~~~ge~~vtliq~~~~~L~~~~~~ri~vgyL~LL~~WL~e~p~AV~dFL~~~s~l~~L~~~i~~~~~~  532 (651)
T 3grl_A          453 TQKEQLLRVQLATSIGNPPVSLLQQCTNILSQGSKIQTRVGLLMLLCTWLSNCPIAVTHFLHNSANVPFLTGQIAENLGE  532 (651)
T ss_dssp             HHHHHHTTCBCCCCTTCCCCBHHHHHHHHTTTTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHHHSCCCH
T ss_pred             HHHHHHHhCcccccCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHHHHHhCChHHHHHHHcCCchHHHHHHHHHhccCc
Confidence            55555443      11     15566666653 456677766776666666 8888888888775 9999988743  2 


Q ss_pred             -CHHHHHHHHHHHHH
Q 044999          393 -SEELRDNAAESLIN  406 (461)
Q Consensus       393 -~~~~~~~a~~~L~~  406 (461)
                       +.-++--++..|.-
T Consensus       533 ~~~lvqGL~a~LLGi  547 (651)
T 3grl_A          533 EEQLVQGLCALLLGI  547 (651)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHH
Confidence             23345555555543

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B

Probab=99.75  E-value=1.5e-15  Score=151.15  Aligned_cols=359  Identities=14%  Similarity=0.140  Sum_probs=219.0

Q ss_pred             HHHHHHhhcCCHHHHHHHHHHHHhhcCCCchhHHHhhHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHhcCCchhHHH
Q 044999           13 NRFEQAVVSGSEALQVKALTKLARVSKFAPQDILAATIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQADGALATE   92 (461)
Q Consensus        13 ~~l~~ll~~~~~~~~~~a~~~l~~la~~~~~~~l~~~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~   92 (461)
                      +.+.+.+.++++.+|..|+.+++++..++   .....++.+.+++.+      +++.+++.|+.++.++...+++..   
T Consensus        89 n~l~kdL~~~n~~ir~~AL~~L~~i~~~~---~~~~l~~~l~~~L~d------~~~~VRk~A~~al~~i~~~~p~~~---  156 (591)
T 2vgl_B           89 NSFVKDCEDPNPLIRALAVRTMGCIRVDK---ITEYLCEPLRKCLKD------EDPYVRKTAAVCVAKLHDINAQMV---  156 (591)
T ss_dssp             HHHGGGSSSSSHHHHHHHHHHHHTCCSGG---GHHHHHHHHHHHSSC------SCHHHHHHHHHHHHHHHHSSCCCH---
T ss_pred             HHHHHHcCCCCHHHHHHHHHHHHcCChHH---HHHHHHHHHHHHcCC------CChHHHHHHHHHHHHHHhhChhhc---
Confidence            34444566777777777777777766221   222267778888875      568899999999999998523322   


Q ss_pred             HHhcCCHHHHHhcCCCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHhhC-ChH
Q 044999           93 IGQSGVINSVLRLFPQSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLNSCNDGTRRYLLEILSALAL-LRE  171 (461)
Q Consensus        93 ~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~-~~~  171 (461)
                       .+.+.++.+.++|.++++.|+..++.++..++..+++....-...+.+..|+..+...++..+...++++..++. +++
T Consensus       157 -~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~  235 (591)
T 2vgl_B          157 -EDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDR  235 (591)
T ss_dssp             -HHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHH
T ss_pred             -ccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChH
Confidence             234678999999999999999999999999987654321000011235667777778888889999999988883 333


Q ss_pred             HHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcC----chhHHHHHhcCChHHHHHhcccCCHHHHHHHHHHHHH
Q 044999          172 VRRVLICLGGLRYLVEAVSFGSMVSRERACQAIGLLAVT----GRARRLLVELGVIPGLVELFHIGDWTTKLVAGNTLGV  247 (461)
Q Consensus       172 ~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~----~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~  247 (461)
                      ...     ..++.+...+++.++.++..|++++..+...    ++....+ -....+.|+.++. +++.++..++.+|..
T Consensus       236 ~~~-----~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~-~~~~~~~L~~L~~-~d~~vr~~aL~~l~~  308 (591)
T 2vgl_B          236 EAQ-----SICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNML-LKKLAPPLVTLLS-GEPEVQYVALRNINL  308 (591)
T ss_dssp             HHH-----HHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTTBSHHHH-HHHTHHHHHHHTT-SCHHHHHHHHHHHHH
T ss_pred             HHH-----HHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCCCHHHHHHH-HHHHHHHHHHHhc-CCccHHHHHHHHHHH
Confidence            322     3467777788888999999999999998742    2222222 2335677776654 788999999999998


Q ss_pred             HhcC-ccchhhhhhcCCHHHHHHHhCCCChhHHHHHHHHHHHhccCcccHHHHHHHHHHHhccCCHHHHHHHHHHHHHhh
Q 044999          248 VAAH-VEYITPVAEAGAIPLYAELLQGPDSTGKEISEDVFCILAVSEANANAIAEHLVRILREGDNEANAAAADVLWDLA  326 (461)
Q Consensus       248 l~~~-~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~l~~ll~~~~~~~~~~a~~~L~~l~  326 (461)
                      +... ++.-...     +..+. .+.+++..++..++.+|.+++.. .+...+.+.+...+.+.+++++..++++++.++
T Consensus       309 i~~~~p~~~~~~-----~~~~~-~~~~d~~~Ir~~al~~L~~l~~~-~nv~~iv~~L~~~l~~~d~~~r~~~v~aI~~la  381 (591)
T 2vgl_B          309 IVQKRPEILKQE-----IKVFF-VKYNDPIYVKLEKLDIMIRLASQ-ANIAQVLAELKEYATEVDVDFVRKAVRAIGRCA  381 (591)
T ss_dssp             HHHHCCSTTTTC-----TTTTS-CCTTSCHHHHHHHHHHHHHTCCS-STHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHH
T ss_pred             HHHhChHHHHHH-----HHhhe-eccCChHHHHHHHHHHHHHHCCh-hhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence            8764 2211100     11111 11122355666666666665532 233444455556666666666666666666666


Q ss_pred             CC-CCchhHHhhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcC-ChhhHHHHHhCCChHHHHHhcc-CCCHHHHHHHHHH
Q 044999          327 GY-KHSVPVIRNSGAIPILVNLLRGENDEVREKVSGAIAQLSY-NEADRVALADAGAVPIMIELLH-DESEELRDNAAES  403 (461)
Q Consensus       327 ~~-~~~~~~l~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~-~~~~~~~~~~~~~i~~L~~ll~-~~~~~~~~~a~~~  403 (461)
                      .. +..     ....++.|++++.+....++..+..++..+.. +++.     ...+++.|.+.+. ...++++..++|+
T Consensus       382 ~~~~~~-----~~~~v~~Ll~ll~~~~~~v~~e~i~~l~~ii~~~p~~-----~~~~v~~L~~~l~~~~~~~~~~~~~wi  451 (591)
T 2vgl_B          382 IKVEQS-----AERCVSTLLDLIQTKVNYVVQEAIVVIRDIFRKYPNK-----YESIIATLCENLDSLDEPDARAAMIWI  451 (591)
T ss_dssp             TTCHHH-----HHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHSCSS-----CCTTHHHHHHTTTTCCSHHHHHHHHHH
T ss_pred             HhChhH-----HHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHCcch-----HHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence            32 111     11234555566655555555555555555544 3332     1233455555443 2345555555555


Q ss_pred             HHHhc
Q 044999          404 LINFS  408 (461)
Q Consensus       404 L~~l~  408 (461)
                      |...+
T Consensus       452 lGey~  456 (591)
T 2vgl_B          452 VGEYA  456 (591)
T ss_dssp             HHTTC
T ss_pred             HHccc
Confidence            55543

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B

Probab=99.70  E-value=2.4e-15  Score=149.64  Aligned_cols=366  Identities=11%  Similarity=0.078  Sum_probs=259.9

Q ss_pred             HHHhHHHHHHHhhcCCHHHHHHHHHHHHhhcCCCchhHHHhhHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHhcCCc
Q 044999            8 WEEAFNRFEQAVVSGSEALQVKALTKLARVSKFAPQDILAATIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQADG   87 (461)
Q Consensus         8 ~~~~~~~l~~ll~~~~~~~~~~a~~~l~~la~~~~~~~l~~~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~   87 (461)
                      ....+..+++++.+.+..+|..+...+..+++.. .+...-+++.+.+-|++      +++.++..|+.+|+++..   +
T Consensus        47 ~~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~-~e~~~l~~n~l~kdL~~------~n~~ir~~AL~~L~~i~~---~  116 (591)
T 2vgl_B           47 VSSLFPDVVNCMQTDNLELKKLVYLYLMNYAKSQ-PDMAIMAVNSFVKDCED------PNPLIRALAVRTMGCIRV---D  116 (591)
T ss_dssp             CGGGHHHHHHTTSSSCHHHHHHHHHHHHHHHHHS-HHHHHTTHHHHGGGSSS------SSHHHHHHHHHHHHTCCS---G
T ss_pred             hHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccC-chHHHHHHHHHHHHcCC------CCHHHHHHHHHHHHcCCh---H
Confidence            3456777888888899999988888888877211 12222266777777765      456666667777777654   3


Q ss_pred             hhHHHHHhcCCHHHHHhcCCCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHhh
Q 044999           88 ALATEIGQSGVINSVLRLFPQSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLNSCNDGTRRYLLEILSALA  167 (461)
Q Consensus        88 ~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~  167 (461)
                      +....     .++.+.+++.+.++.+++.|+.++..+...+++.   +...+.++.+.+++.+.++.++..|+.+|..++
T Consensus       117 ~~~~~-----l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~---~~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~  188 (591)
T 2vgl_B          117 KITEY-----LCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQM---VEDQGFLDSLRDLIADSNPMVVANAVAALSEIS  188 (591)
T ss_dssp             GGHHH-----HHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCC---HHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHT
T ss_pred             HHHHH-----HHHHHHHHcCCCChHHHHHHHHHHHHHHhhChhh---cccccHHHHHHHHhCCCChhHHHHHHHHHHHHH
Confidence            32222     3577899999999999999999999988765543   233567899999999999999999999999998


Q ss_pred             CChH-HHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhcccCCHHHHHHHHHHHH
Q 044999          168 LLRE-VRRVLICLGGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRARRLLVELGVIPGLVELFHIGDWTTKLVAGNTLG  246 (461)
Q Consensus       168 ~~~~-~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~  246 (461)
                      .+.. ....-...+.+..++..+.+.++..+...++++..++...+..    ....++.+..++++.++.++..|++++.
T Consensus       189 ~~~~~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~----~~~~l~~l~~~l~~~~~~V~~ea~~~i~  264 (591)
T 2vgl_B          189 ESHPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDRE----AQSICERVTPRLSHANSAVVLSAVKVLM  264 (591)
T ss_dssp             TSCCSCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHHH----HHHHHHHHTTCSCSSTTHHHHHHHHHHH
T ss_pred             hhCCCccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChHH----HHHHHHHHHHHHcCCChHHHHHHHHHHH
Confidence            4332 2100011124667777787888889999999998887554331    1235778888899999999999999999


Q ss_pred             HHhcC----ccchhhhhhcCCHHHHHHHhCCCChhHHHHHHHHHHHhccC-cccHHHHHHHHHHHhccCCHHHHHHHHHH
Q 044999          247 VVAAH----VEYITPVAEAGAIPLYAELLQGPDSTGKEISEDVFCILAVS-EANANAIAEHLVRILREGDNEANAAAADV  321 (461)
Q Consensus       247 ~l~~~----~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~-~~~~~~i~~~l~~ll~~~~~~~~~~a~~~  321 (461)
                      .+...    ++....+ -..+.+.|+.++. .++++|..++.+|..+... ++.-......+. .+.+++..++..++.+
T Consensus       265 ~l~~~~~~~~~~~~~~-~~~~~~~L~~L~~-~d~~vr~~aL~~l~~i~~~~p~~~~~~~~~~~-~~~~d~~~Ir~~al~~  341 (591)
T 2vgl_B          265 KFLELLPKDSDYYNML-LKKLAPPLVTLLS-GEPEVQYVALRNINLIVQKRPEILKQEIKVFF-VKYNDPIYVKLEKLDI  341 (591)
T ss_dssp             HSCCSCCBTTBSHHHH-HHHTHHHHHHHTT-SCHHHHHHHHHHHHHHHHHCCSTTTTCTTTTS-CCTTSCHHHHHHHHHH
T ss_pred             HHhhccCCCHHHHHHH-HHHHHHHHHHHhc-CCccHHHHHHHHHHHHHHhChHHHHHHHHhhe-eccCChHHHHHHHHHH
Confidence            98742    2222222 2344677776664 7899999999999998643 221110001111 1224458999999999


Q ss_pred             HHHhhCCCCchhHHhhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcC-ChhhHHHHHhCCChHHHHHhccCCCHHHHHHH
Q 044999          322 LWDLAGYKHSVPVIRNSGAIPILVNLLRGENDEVREKVSGAIAQLSY-NEADRVALADAGAVPIMIELLHDESEELRDNA  400 (461)
Q Consensus       322 L~~l~~~~~~~~~l~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~-~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a  400 (461)
                      +..++... +...     +++.|..++.+.+.+++..++++++.++. .+....     .+++.|++++.+..+.++..+
T Consensus       342 L~~l~~~~-nv~~-----iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~~~~~~-----~~v~~Ll~ll~~~~~~v~~e~  410 (591)
T 2vgl_B          342 MIRLASQA-NIAQ-----VLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQSAE-----RCVSTLLDLIQTKVNYVVQEA  410 (591)
T ss_dssp             HHHTCCSS-THHH-----HHHHHHHHTTSSCHHHHHHHHHHHHHHHTTCHHHHH-----HHHHHHHHHHHTCCHHHHHHH
T ss_pred             HHHHCChh-hHHH-----HHHHHHHHHhcCCHHHHHHHHHHHHHHHHhChhHHH-----HHHHHHHHHHcccchHHHHHH
Confidence            99998543 3332     45668889999999999999999999998 544332     357899999999999999988


Q ss_pred             HHHHHHhcC
Q 044999          401 AESLINFSE  409 (461)
Q Consensus       401 ~~~L~~l~~  409 (461)
                      ..++.++..
T Consensus       411 i~~l~~ii~  419 (591)
T 2vgl_B          411 IVVIRDIFR  419 (591)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            888888853

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A

Probab=99.69  E-value=2e-14  Score=150.33  Aligned_cols=392  Identities=12%  Similarity=0.091  Sum_probs=268.3

Q ss_pred             CcHHHhHHHHHHHhhcC-CHHHHHHHHHHHHhhc-CCCc-----hhHHHhhHHHHHHhhccCCCCCCCcHHHHHHHHHHH
Q 044999            6 TNWEEAFNRFEQAVVSG-SEALQVKALTKLARVS-KFAP-----QDILAATIPILARLLGENNFSGNLTRSIQQAAAYCL   78 (461)
Q Consensus         6 ~~~~~~~~~l~~ll~~~-~~~~~~~a~~~l~~la-~~~~-----~~~l~~~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L   78 (461)
                      ..|.+.++.+.+.+.++ ++.++..|+..++.++ ....     .......++.+...+..    .+.++.++..++.++
T Consensus       130 ~~w~~ll~~L~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~ll~~l~~~l~~----~~~~~~vr~~al~~l  205 (861)
T 2bpt_A          130 GAWPELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQS----TETSKAVRLAALNAL  205 (861)
T ss_dssp             TCCHHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHST----TCCCHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHHHHHhhcC----CCCCHHHHHHHHHHH
Confidence            47999999999999998 9999999999999998 3221     22333388888888875    333677888899999


Q ss_pred             HHHHhcCCchhHHHHHhcCCHHHHHhcCCCCCHHHHHHHHHHHHHHhccChhh-HHHHHHcCCHHHHHHHhcCCChHHHH
Q 044999           79 KQIASQADGALATEIGQSGVINSVLRLFPQSDDSFRTVLVKCLRVFVTFGNEN-RVIVARNGGLEIVIDLLNSCNDGTRR  157 (461)
Q Consensus        79 ~~l~~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~-~~~~~~~g~i~~L~~ll~~~~~~~~~  157 (461)
                      ..+.................++.+.+.+.++++.++..++.++..++...+.. ...+ ....++.+...+.+.++.++.
T Consensus       206 ~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l-~~~l~~~~~~~~~~~~~~vr~  284 (861)
T 2bpt_A          206 ADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYM-EQALYALTIATMKSPNDKVAS  284 (861)
T ss_dssp             HHHGGGCHHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGGGCHHHH-HHTHHHHHHHHTTCSSHHHHH
T ss_pred             HHHHHHHHHHccChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHcCCcHHHHH
Confidence            98764211111000011224667777888889999999999998877543321 2222 215667777788888999999


Q ss_pred             HHHHHHHHhhCChHH------------------HHHHHhcCCHHHHHHHHcCC-------CHHHHHHHHHHHHHhhcCch
Q 044999          158 YLLEILSALALLREV------------------RRVLICLGGLRYLVEAVSFG-------SMVSRERACQAIGLLAVTGR  212 (461)
Q Consensus       158 ~a~~~L~~l~~~~~~------------------~~~~~~~~~l~~l~~~l~~~-------~~~~~~~a~~~L~~l~~~~~  212 (461)
                      .|+..+..++.....                  ..... ...++.++..+...       ++.++..+..+|..++...+
T Consensus       285 ~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~  363 (861)
T 2bpt_A          285 MTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSI-KDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCG  363 (861)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHH-HHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHG
T ss_pred             HHHHHHHHHHHHHHhhhhhhhhccCCchhhHHHHHHHH-HHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHcc
Confidence            999999988743211                  11111 34677788887642       35789999999999876543


Q ss_pred             hHHHHHhcCChHHHHHhcccCCHHHHHHHHHHHHHHhcCcc--chhhhhhcCCHHHHHHHhCCCChhHHHHHHHHHHHhc
Q 044999          213 ARRLLVELGVIPGLVELFHIGDWTTKLVAGNTLGVVAAHVE--YITPVAEAGAIPLYAELLQGPDSTGKEISEDVFCILA  290 (461)
Q Consensus       213 ~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~--~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~  290 (461)
                      . ..+  ...++.+...+.+.++..++.++.+++.++....  .-.... ..+++.++..+.++++.+|..++.++.+++
T Consensus       364 ~-~~~--~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l-~~il~~l~~~l~d~~~~vr~~a~~~l~~l~  439 (861)
T 2bpt_A          364 N-HIL--EPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYV-HQALPSILNLMNDQSLQVKETTAWCIGRIA  439 (861)
T ss_dssp             G-GGH--HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHHHGGGCSCHHHHHHHHHHHHHHH
T ss_pred             H-hHH--HHHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Confidence            2 111  1246677777888899999999999999986522  111111 246888899999999999999999999885


Q ss_pred             cC-------cccHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhCC-C----CchhHHhhcCCHHHHHHhhcCCC--HHHH
Q 044999          291 VS-------EANANAIAEHLVRILREGDNEANAAAADVLWDLAGY-K----HSVPVIRNSGAIPILVNLLRGEN--DEVR  356 (461)
Q Consensus       291 ~~-------~~~~~~i~~~l~~ll~~~~~~~~~~a~~~L~~l~~~-~----~~~~~l~~~g~i~~L~~ll~~~~--~~v~  356 (461)
                      ..       ...-..+.+.+++.+.+. +.++..|++++.+++.. .    ....... ..+++.|+..+.+.+  +.++
T Consensus       440 ~~~~~~~~~~~~~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~-~~il~~L~~~l~~~d~~~~vr  517 (861)
T 2bpt_A          440 DSVAESIDPQQHLPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFY-PALVDGLIGAANRIDNEFNAR  517 (861)
T ss_dssp             HHHGGGSCTTTTHHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGH-HHHHHHHHHHHTCSCCGGGHH
T ss_pred             HHhhhhcCCHHHHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHH-HHHHHHHHHHHhCcCcchHHH
Confidence            32       233455558888888776 99999999999999853 1    1111111 245778888887543  7899


Q ss_pred             HHHHHHHHHhcC-ChhhHHHHHhCCChHHHHHhccC---------------CCHHHHHHHHHHHHHhcCC
Q 044999          357 EKVSGAIAQLSY-NEADRVALADAGAVPIMIELLHD---------------ESEELRDNAAESLINFSED  410 (461)
Q Consensus       357 ~~a~~~L~~l~~-~~~~~~~~~~~~~i~~L~~ll~~---------------~~~~~~~~a~~~L~~l~~~  410 (461)
                      ..+..++..++. .+........ ..++.+++.+..               ....++..++.+|.+++..
T Consensus       518 ~~a~~al~~l~~~~~~~~~~~~~-~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~  586 (861)
T 2bpt_A          518 ASAFSALTTMVEYATDTVAETSA-SISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRK  586 (861)
T ss_dssp             HHHHHHHHHHHHHCCGGGHHHHH-HHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcchhhHHHHH-HHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999988 3332222222 246666666532               2455777888888888644

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=99.68  E-value=5.3e-14  Score=140.47  Aligned_cols=284  Identities=13%  Similarity=0.059  Sum_probs=204.1

Q ss_pred             hHHHHHHHhhcCCHHHHHHHHHHHHhhcCCCchhHHHh-hHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHhcCCchh
Q 044999           11 AFNRFEQAVVSGSEALQVKALTKLARVSKFAPQDILAA-TIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQADGAL   89 (461)
Q Consensus        11 ~~~~l~~ll~~~~~~~~~~a~~~l~~la~~~~~~~l~~-~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~   89 (461)
                      ..+.|.+-+.+.++.+|..|+.+++++..+    .+.+ .++.+.+.+.+      .++.+++.|+.++.++... +++.
T Consensus       108 ~in~l~kDL~~~n~~vr~lAL~~L~~i~~~----~~~~~l~~~l~~~L~~------~~~~VRk~A~~al~~l~~~-~p~~  176 (618)
T 1w63_A          108 MTNCIKNDLNHSTQFVQGLALCTLGCMGSS----EMCRDLAGEVEKLLKT------SNSYLRKKAALCAVHVIRK-VPEL  176 (618)
T ss_dssp             HHHHHHHHHSCSSSHHHHHHHHHHHHHCCH----HHHHHHHHHHHHHHHS------CCHHHHHHHHHHHHHHHHH-CGGG
T ss_pred             HHHHHHHhcCCCCHhHHHHHHHHHHhcCCH----HHHHHHHHHHHHHHcC------CCHHHHHHHHHHHHHHHHH-ChHH
Confidence            456778888899999999999999999832    2344 78889999986      5678888899999999985 3332


Q ss_pred             HHHHHhcCCHHHHHhcCCCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhcC---------------CChH
Q 044999           90 ATEIGQSGVINSVLRLFPQSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLNS---------------CNDG  154 (461)
Q Consensus        90 ~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll~~---------------~~~~  154 (461)
                      .     .+.++.+.+++.+.++.++..++.++..++..+++....+.  ..++.++.+|.+               .++.
T Consensus       177 v-----~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~~~~--~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~  249 (618)
T 1w63_A          177 M-----EMFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLAHFR--KLVPQLVRILKNLIMSGYSPEHDVSGISDPF  249 (618)
T ss_dssp             G-----GGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHHHHHH--TTHHHHHHHHHHHHHSCCCTTTCSSSSSCHH
T ss_pred             H-----HHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHHHHHHH--HHHHHHHHHHHHHHcCCCCccccccCCCCCh
Confidence            1     25778889999999999999999999998865544322332  567888876653               4788


Q ss_pred             HHHHHHHHHHHhhC-ChHHHHHHHhcCCHHHHHHHHc------CCCHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHH
Q 044999          155 TRRYLLEILSALAL-LREVRRVLICLGGLRYLVEAVS------FGSMVSRERACQAIGLLAVTGRARRLLVELGVIPGLV  227 (461)
Q Consensus       155 ~~~~a~~~L~~l~~-~~~~~~~~~~~~~l~~l~~~l~------~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~  227 (461)
                      .+...+++|..++. +++...     ...+.|..++.      +.+..+...++.++..+...+....     .+++.|.
T Consensus       250 ~q~~il~~L~~l~~~~~~~~~-----~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~~~~l~~-----~a~~~L~  319 (618)
T 1w63_A          250 LQVRILRLLRILGRNDDDSSE-----AMNDILAQVATNTETSKNVGNAILYETVLTIMDIKSESGLRV-----LAINILG  319 (618)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHH-----TTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSCCCHHHHH-----HHHHHHH
T ss_pred             HHHHHHHHHHHhCCCCHHHHH-----HHHHHHHHHHhccccccchHHHHHHHHHHHHHhcCCCHHHHH-----HHHHHHH
Confidence            88999999999984 333222     23444555543      1245788888888888754322121     2467777


Q ss_pred             HhcccCCHHHHHHHHHHHHHHhcCccchhhhhhcCCHHHHHHHhCCCChhHHHHHHHHHHHhccCcccHHHHHHHHHHHh
Q 044999          228 ELFHIGDWTTKLVAGNTLGVVAAHVEYITPVAEAGAIPLYAELLQGPDSTGKEISEDVFCILAVSEANANAIAEHLVRIL  307 (461)
Q Consensus       228 ~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~l~~ll  307 (461)
                      .++.++++.++..|+.+|..++...   ..++. ...+.++.++.+++..++..++.+|..++.... ...+.+.+...+
T Consensus       320 ~~L~~~d~~vr~~aL~~L~~i~~~~---p~~~~-~~~~~i~~~l~d~d~~Ir~~alelL~~l~~~~n-v~~iv~eL~~~l  394 (618)
T 1w63_A          320 RFLLNNDKNIRYVALTSLLKTVQTD---HNAVQ-RHRSTIVDCLKDLDVSIKRRAMELSFALVNGNN-IRGMMKELLYFL  394 (618)
T ss_dssp             HHHTCSSTTTHHHHHHHHHHHHHHH---HHHHG-GGHHHHHHGGGSSCHHHHHHHHHHHHHHCCSSS-THHHHHHHHHHH
T ss_pred             HHHhCCCCchHHHHHHHHHHHHhhC---HHHHH-HHHHHHHHHccCCChhHHHHHHHHHHHHccccc-HHHHHHHHHHHH
Confidence            7788888888888888888887641   11121 235677888888888888888888888876543 344557777777


Q ss_pred             ccCCHHHHHHHHHHHHHhhC
Q 044999          308 REGDNEANAAAADVLWDLAG  327 (461)
Q Consensus       308 ~~~~~~~~~~a~~~L~~l~~  327 (461)
                      .+.+++++..++.+|+.++.
T Consensus       395 ~~~d~e~r~~~v~~I~~la~  414 (618)
T 1w63_A          395 DSCEPEFKADCASGIFLAAE  414 (618)
T ss_dssp             HHCCHHHHHHHHHHHHHHHH
T ss_pred             HhCCHHHHHHHHHHHHHHHH
Confidence            77888888888888888884

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A

Probab=99.65  E-value=3.6e-14  Score=148.69  Aligned_cols=314  Identities=14%  Similarity=0.134  Sum_probs=220.9

Q ss_pred             CCcHHHhHHHHHHHhhcC--CHHHHHHHHHHHHhhc-CCCch---hHHHhhHHHHHHhhccCCCCCCCcHHHHHHHHHHH
Q 044999            5 DTNWEEAFNRFEQAVVSG--SEALQVKALTKLARVS-KFAPQ---DILAATIPILARLLGENNFSGNLTRSIQQAAAYCL   78 (461)
Q Consensus         5 ~~~~~~~~~~l~~ll~~~--~~~~~~~a~~~l~~la-~~~~~---~~l~~~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L   78 (461)
                      ...|.+.++.+...+.++  ++.+|..++.+++.++ .....   ..+...++.+.+.+..    ++.++.++..|+.++
T Consensus       123 ~~~w~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~----~~~~~~vr~~a~~~l  198 (876)
T 1qgr_A          123 VNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRK----EEPSNNVKLAATNAL  198 (876)
T ss_dssp             GTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHST----TCSCHHHHHHHHHHH
T ss_pred             ccccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCHhhHHhHHHHHHHHHHHhhcC----CCCCHHHHHHHHHHH
Confidence            357999999999999999  9999999999999998 32211   1222277888888875    322567777799999


Q ss_pred             HHHHhcCCchhHHHHHhcCCHHHHHhcCCCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhcCCChHHHHH
Q 044999           79 KQIASQADGALATEIGQSGVINSVLRLFPQSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLNSCNDGTRRY  158 (461)
Q Consensus        79 ~~l~~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~  158 (461)
                      ..+.................++.+.+.+.+.++.++..++.++..++...+..-........++.++..+.+.++.++..
T Consensus       199 ~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~  278 (876)
T 1qgr_A          199 LNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQ  278 (876)
T ss_dssp             HHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHH
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence            99886311111111111225777778888889999999999999888654433222233367888888888888999999


Q ss_pred             HHHHHHHhhCChHHH-----H-------------HHH---hcCCHHHHHHHHcC-------CCHHHHHHHHHHHHHhhcC
Q 044999          159 LLEILSALALLREVR-----R-------------VLI---CLGGLRYLVEAVSF-------GSMVSRERACQAIGLLAVT  210 (461)
Q Consensus       159 a~~~L~~l~~~~~~~-----~-------------~~~---~~~~l~~l~~~l~~-------~~~~~~~~a~~~L~~l~~~  210 (461)
                      |+..+..++......     .             ...   -...++.++..+..       +++.+|..+..++..++..
T Consensus       279 al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~  358 (876)
T 1qgr_A          279 GIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATC  358 (876)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHH
Confidence            999998887432100     0             000   02246667777742       3457899999999988765


Q ss_pred             chhHHHHHhcCChHHHHHhcccCCHHHHHHHHHHHHHHhcCcc--chhhhhhcCCHHHHHHHhCCCChhHHHHHHHHHHH
Q 044999          211 GRARRLLVELGVIPGLVELFHIGDWTTKLVAGNTLGVVAAHVE--YITPVAEAGAIPLYAELLQGPDSTGKEISEDVFCI  288 (461)
Q Consensus       211 ~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~--~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~  288 (461)
                      .+.  .+. ..+++.+...+.++++.++..++.+++.++....  ..... -..+++.++..+.++++.+|..|+.+|.+
T Consensus       359 ~~~--~~~-~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~-~~~~l~~l~~~l~d~~~~vr~~a~~~l~~  434 (876)
T 1qgr_A          359 CED--DIV-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPL-VIQAMPTLIELMKDPSVVVRDTAAWTVGR  434 (876)
T ss_dssp             HGG--GGH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHH-HHHHHHHHHHHHTCSSHHHHHHHHHHHHH
T ss_pred             CcH--hhH-HHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHH-HHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            442  111 2356677778888899999999999999987622  11111 23568899999999999999999999999


Q ss_pred             hccC-------cccHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhC
Q 044999          289 LAVS-------EANANAIAEHLVRILREGDNEANAAAADVLWDLAG  327 (461)
Q Consensus       289 l~~~-------~~~~~~i~~~l~~ll~~~~~~~~~~a~~~L~~l~~  327 (461)
                      ++..       ...-..+.+.++..+.+. +.++..++++|.+++.
T Consensus       435 ~~~~~~~~~~~~~~l~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~  479 (876)
T 1qgr_A          435 ICELLPEAAINDVYLAPLLQCLIEGLSAE-PRVASNVCWAFSSLAE  479 (876)
T ss_dssp             HHHHCGGGTSSTTTHHHHHHHHHHHTTSC-HHHHHHHHHHHHHHHH
T ss_pred             HHHhCchhcccHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHH
Confidence            9643       233445558888888775 8999999999999984

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16

Probab=99.65  E-value=8.3e-14  Score=125.35  Aligned_cols=258  Identities=15%  Similarity=0.157  Sum_probs=202.0

Q ss_pred             HHhcCCHHHHHhcCCCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHhhCChHH
Q 044999           93 IGQSGVINSVLRLFPQSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLNSCNDGTRRYLLEILSALALLREV  172 (461)
Q Consensus        93 ~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~  172 (461)
                      ....+.++.|++.|.++++.++..++.++..+..           .+.++.|++++++.++.+|..|+.+|..+......
T Consensus        19 ~~~~~~i~~L~~~L~~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~   87 (280)
T 1oyz_A           19 QCKKLNDDELFRLLDDHNSLKRISSARVLQLRGG-----------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKC   87 (280)
T ss_dssp             HHHTSCHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTT
T ss_pred             HHHHhhHHHHHHHHHcCCHHHHHHHHHHHHccCC-----------chHHHHHHHHHcCCCHHHHHHHHHHHHHhcccccc
Confidence            3355689999999999999999999999987762           12578899999999999999999999998744332


Q ss_pred             HHHHHhcCCHHHHH-HHHcCCCHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhcccCCHHHHHHHHHHHHHHhcC
Q 044999          173 RRVLICLGGLRYLV-EAVSFGSMVSRERACQAIGLLAVTGRARRLLVELGVIPGLVELFHIGDWTTKLVAGNTLGVVAAH  251 (461)
Q Consensus       173 ~~~~~~~~~l~~l~-~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~  251 (461)
                      ...     .++.+. .++.++++.+|..++.+|+++....+..    ....++.|+..+.++++.++..++.+|+++.. 
T Consensus        88 ~~~-----l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~~----~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~-  157 (280)
T 1oyz_A           88 EDN-----VFNILNNMALNDKSACVRATAIESTAQRCKKNPIY----SPKIVEQSQITAFDKSTNVRRATAFAISVIND-  157 (280)
T ss_dssp             HHH-----HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGG----HHHHHHHHHHHTTCSCHHHHHHHHHHHHTC---
T ss_pred             chH-----HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCcc----cHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC-
Confidence            211     233444 2457789999999999999997433221    12357889999999999999999999988653 


Q ss_pred             ccchhhhhhcCCHHHHHHHhCCCChhHHHHHHHHHHHhccCcccHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCc
Q 044999          252 VEYITPVAEAGAIPLYAELLQGPDSTGKEISEDVFCILAVSEANANAIAEHLVRILREGDNEANAAAADVLWDLAGYKHS  331 (461)
Q Consensus       252 ~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~l~~ll~~~~~~~~~~a~~~L~~l~~~~~~  331 (461)
                               .+.++.|+.+++++++.++..++.+|..+....   ....+.+..++.++++.++..|+.+|+.+.     
T Consensus       158 ---------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~---~~~~~~L~~~l~d~~~~vR~~A~~aL~~~~-----  220 (280)
T 1oyz_A          158 ---------KATIPLLINLLKDPNGDVRNWAAFAININKYDN---SDIRDCFVEMLQDKNEEVRIEAIIGLSYRK-----  220 (280)
T ss_dssp             ----------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCC---HHHHHHHHHHTTCSCHHHHHHHHHHHHHTT-----
T ss_pred             ---------HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCc---HHHHHHHHHHhcCCCHHHHHHHHHHHHHhC-----
Confidence                     247899999999999999999999999985322   234588999999999999999999999985     


Q ss_pred             hhHHhhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhccC-CCHHHHHHHHHHHH
Q 044999          332 VPVIRNSGAIPILVNLLRGENDEVREKVSGAIAQLSYNEADRVALADAGAVPIMIELLHD-ESEELRDNAAESLI  405 (461)
Q Consensus       332 ~~~l~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~~~~~a~~~L~  405 (461)
                           ....++.|+.++.+++  ++..+..+|+.+...          ..++.|.+++.+ .++++...+..+|.
T Consensus       221 -----~~~~~~~L~~~l~d~~--vr~~a~~aL~~i~~~----------~~~~~L~~~l~~~~~~~~~~~~~~~l~  278 (280)
T 1oyz_A          221 -----DKRVLSVLCDELKKNT--VYDDIIEAAGELGDK----------TLLPVLDTMLYKFDDNEIITSAIDKLK  278 (280)
T ss_dssp             -----CGGGHHHHHHHHTSSS--CCHHHHHHHHHHCCG----------GGHHHHHHHHTTSSCCHHHHHHHHHHT
T ss_pred             -----CHhhHHHHHHHhcCcc--HHHHHHHHHHhcCch----------hhhHHHHHHHhcCCCcHHHHHHHHHhh
Confidence                 2457888999998754  888999999988641          468999998854 56777777777664

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=99.64  E-value=6.4e-14  Score=139.88  Aligned_cols=323  Identities=13%  Similarity=0.051  Sum_probs=238.6

Q ss_pred             HHhHHHHHHHhhcCCHHHHHHHHHHHHhhcCCCchhHHHhhHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHhcCCch
Q 044999            9 EEAFNRFEQAVVSGSEALQVKALTKLARVSKFAPQDILAATIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQADGA   88 (461)
Q Consensus         9 ~~~~~~l~~ll~~~~~~~~~~a~~~l~~la~~~~~~~l~~~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~   88 (461)
                      ...+...++++.+.+...|+.+-..+..+++.. .+.+.-++..+.+-|++    .  ++.++..|+.+|+++..  ++ 
T Consensus        69 ~~~~~~vik~~~s~~~~~Krl~Yl~~~~~~~~~-~e~~~l~in~l~kDL~~----~--n~~vr~lAL~~L~~i~~--~~-  138 (618)
T 1w63_A           69 HFGQLECLKLIASQKFTDKRIGYLGAMLLLDER-QDVHLLMTNCIKNDLNH----S--TQFVQGLALCTLGCMGS--SE-  138 (618)
T ss_dssp             GGGHHHHHHHHHSSSHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHHHSC----S--SSHHHHHHHHHHHHHCC--HH-
T ss_pred             cchHHHHHHHHcCCchHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHhcCC----C--CHhHHHHHHHHHHhcCC--HH-
Confidence            346677788889999999998888888888332 22333388888888886    3  34466669999999985  22 


Q ss_pred             hHHHHHhcCCHHHHHhcCCCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHhhC
Q 044999           89 LATEIGQSGVINSVLRLFPQSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLNSCNDGTRRYLLEILSALAL  168 (461)
Q Consensus        89 ~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~  168 (461)
                      ..     ...++.+.+++++.++.+++.|+.++..+...+++...     +.++.+.+++.+.++.++..|+.+|..++.
T Consensus       139 ~~-----~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v~-----~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~  208 (618)
T 1w63_A          139 MC-----RDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELME-----MFLPATKNLLNEKNHGVLHTSVVLLTEMCE  208 (618)
T ss_dssp             HH-----HHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGGGG-----GGGGGTTTSTTCCCHHHHHHHHHHHHHHCC
T ss_pred             HH-----HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHHHH-----HHHHHHHHHhCCCCHhHHHHHHHHHHHHHH
Confidence            11     23568888999999999999999999999876654322     567788889999999999999999999995


Q ss_pred             Ch-HHHHHHHhcCCHHHHHHHHcC---------------CCHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhcc-
Q 044999          169 LR-EVRRVLICLGGLRYLVEAVSF---------------GSMVSRERACQAIGLLAVTGRARRLLVELGVIPGLVELFH-  231 (461)
Q Consensus       169 ~~-~~~~~~~~~~~l~~l~~~l~~---------------~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~-  231 (461)
                      .. +....+  ...++.++..|.+               .++..+...+++|+.++...+...    ....+.|..++. 
T Consensus       209 ~~~~~~~~~--~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~~----~~~~~~L~~l~~~  282 (618)
T 1w63_A          209 RSPDMLAHF--RKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDSS----EAMNDILAQVATN  282 (618)
T ss_dssp             SHHHHHHHH--HTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHHHH----HTTHHHHHHHHHT
T ss_pred             hChHHHHHH--HHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHHHH----HHHHHHHHHHHhc
Confidence            54 322222  2568888877753               478889999999999987665411    223445555543 


Q ss_pred             -----cCCHHHHHHHHHHHHHHhcCccchhhhhhcCCHHHHHHHhCCCChhHHHHHHHHHHHhccCccc-HHHHHHHHHH
Q 044999          232 -----IGDWTTKLVAGNTLGVVAAHVEYITPVAEAGAIPLYAELLQGPDSTGKEISEDVFCILAVSEAN-ANAIAEHLVR  305 (461)
Q Consensus       232 -----~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~-~~~i~~~l~~  305 (461)
                           +.+..+...++.++..+...+.    +. ..++..|..++.+.++.++..++.+|..++...+. -......++.
T Consensus       283 ~~~~~~~~~aV~~ea~~~i~~l~~~~~----l~-~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p~~~~~~~~~i~~  357 (618)
T 1w63_A          283 TETSKNVGNAILYETVLTIMDIKSESG----LR-VLAINILGRFLLNNDKNIRYVALTSLLKTVQTDHNAVQRHRSTIVD  357 (618)
T ss_dssp             SCCSSTHHHHHHHHHHHHHHHSCCCHH----HH-HHHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHHHHHHGGGHHHHHH
T ss_pred             cccccchHHHHHHHHHHHHHhcCCCHH----HH-HHHHHHHHHHHhCCCCchHHHHHHHHHHHHhhCHHHHHHHHHHHHH
Confidence                 2345778888888888654322    11 13578889999999999999999999999754321 1111178888


Q ss_pred             HhccCCHHHHHHHHHHHHHhhCCCCchhHHhhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcC
Q 044999          306 ILREGDNEANAAAADVLWDLAGYKHSVPVIRNSGAIPILVNLLRGENDEVREKVSGAIAQLSY  368 (461)
Q Consensus       306 ll~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~  368 (461)
                      ++.+++..++..|+.+|..++..... ..+     ++.|..++.+.+++++..++.+++.++.
T Consensus       358 ~l~d~d~~Ir~~alelL~~l~~~~nv-~~i-----v~eL~~~l~~~d~e~r~~~v~~I~~la~  414 (618)
T 1w63_A          358 CLKDLDVSIKRRAMELSFALVNGNNI-RGM-----MKELLYFLDSCEPEFKADCASGIFLAAE  414 (618)
T ss_dssp             GGGSSCHHHHHHHHHHHHHHCCSSST-HHH-----HHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_pred             HccCCChhHHHHHHHHHHHHcccccH-HHH-----HHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence            99999999999999999999875333 332     4668888888899999999999999998

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A

Probab=99.61  E-value=6e-14  Score=135.83  Aligned_cols=380  Identities=15%  Similarity=0.070  Sum_probs=258.3

Q ss_pred             HHHHHHhhcCCHHHHHHHHHHHHhhcCCCchhHHHhhHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHhcCCchhHH-
Q 044999           13 NRFEQAVVSGSEALQVKALTKLARVSKFAPQDILAATIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQADGALAT-   91 (461)
Q Consensus        13 ~~l~~ll~~~~~~~~~~a~~~l~~la~~~~~~~l~~~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~-   91 (461)
                      ..++....++|..+|..|-..|..+...    .....+..|+..+..    ++.++.++..|+..|.++... ...... 
T Consensus         4 ~~~L~~~~s~d~~~r~~Ae~~L~~~~~~----~~~~~~~~L~~il~~----~~~~~~vR~~a~~~Lk~~i~~-~~~~~~~   74 (462)
T 1ibr_B            4 ITILEKTVSPDRLELEAAQKFLERAAVE----NLPTFLVELSRVLAN----PGNSQVARVAAGLQIKNSLTS-KDPDIKA   74 (462)
T ss_dssp             HHHHHHTTCSCHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHC----TTSCHHHHHHHHHHHHHHHCC-SSHHHHH
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHHhh----ChHHHHHHHHHHHHc----CCCChHHHHHHHHHHHHhccc-cchHHHH
Confidence            3445556688999999999988876510    012256677788875    544566777799999999753 211000 


Q ss_pred             -------HH---HhcCCHHHHHhcCCCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhcCC--ChHHHHHH
Q 044999           92 -------EI---GQSGVINSVLRLFPQSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLNSC--NDGTRRYL  159 (461)
Q Consensus        92 -------~~---~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~--~~~~~~~a  159 (461)
                             .+   .....-..+++.+.+.++.+ ..++.++..++.......   .-.+.++.++..+.+.  ++.++..+
T Consensus        75 ~~~~~~~~l~~~~~~~ik~~ll~~l~~~~~~v-~~~~~~i~~ia~~~~~~~---~w~~ll~~L~~~l~~~~~~~~~r~~a  150 (462)
T 1ibr_B           75 QYQQRWLAIDANARREVKNYVLQTLGTETYRP-SSASQCVAGIACAEIPVN---QWPELIPQLVANVTNPNSTEHMKEST  150 (462)
T ss_dssp             HHHHHHHTSCHHHHHHHHHHHHHHTTCCCSSS-CSHHHHHHHHHHHHGGGT---CCTTHHHHHHHHHHCTTCCHHHHHHH
T ss_pred             HHHhhhhcCCHHHHHHHHHHHHHHhCCCCchh-hHHHHHHHHHHHHhcccc---ccHHHHHHHHHHhccCCCCHHHHHHH
Confidence                   00   01123345777788877777 788888887775321110   1145788899999888  89999999


Q ss_pred             HHHHHHhhCC--hHHHHHHHhcCCHHHHHHHHcCC--CHHHHHHHHHHHHHhhcCchh--HHHHHhcCChHHHHHhcccC
Q 044999          160 LEILSALALL--REVRRVLICLGGLRYLVEAVSFG--SMVSRERACQAIGLLAVTGRA--RRLLVELGVIPGLVELFHIG  233 (461)
Q Consensus       160 ~~~L~~l~~~--~~~~~~~~~~~~l~~l~~~l~~~--~~~~~~~a~~~L~~l~~~~~~--~~~~~~~~~i~~L~~ll~~~  233 (461)
                      +.+|..++..  ++...... ...++.++..+.+.  ++.+|..|+.+++++...-..  .......-.++.+...+.++
T Consensus       151 l~~l~~l~~~~~~~~~~~~~-~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~  229 (462)
T 1ibr_B          151 LEAIGYICQDIDPEQLQDKS-NEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCP  229 (462)
T ss_dssp             HHHHHHHHHHSCGGGTGGGH-HHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCS
T ss_pred             HHHHHHHHHhCCchhhHhHH-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCC
Confidence            9999999832  22111111 23678888899888  789999999999997643221  11111111356666677788


Q ss_pred             CHHHHHHHHHHHHHHhcC-ccchhhhhhcCCHHHHHHHhCCCChhHHHHHHHHHHHhccCc-------------------
Q 044999          234 DWTTKLVAGNTLGVVAAH-VEYITPVAEAGAIPLYAELLQGPDSTGKEISEDVFCILAVSE-------------------  293 (461)
Q Consensus       234 ~~~~~~~a~~~L~~l~~~-~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~-------------------  293 (461)
                      +++++..++.+|..++.. ++.-......++++.++..+++.+++++..++..+..++...                   
T Consensus       230 ~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (462)
T 1ibr_B          230 DTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEH  309 (462)
T ss_dssp             SHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSC
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccc
Confidence            999999999999999865 221111122266788888888889999999999888885432                   


Q ss_pred             c---c-H---HHHHHHHHHHhcc-------CCHHHHHHHHHHHHHhhCCCCchhHHhhcCCHHHHHHhhcCCCHHHHHHH
Q 044999          294 A---N-A---NAIAEHLVRILRE-------GDNEANAAAADVLWDLAGYKHSVPVIRNSGAIPILVNLLRGENDEVREKV  359 (461)
Q Consensus       294 ~---~-~---~~i~~~l~~ll~~-------~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~ll~~~~~~v~~~a  359 (461)
                      .   . +   ..+.+.+++.+..       .++.++..|+.+|..++..-.  +.+. ..+++.+...+.+.+..+|..+
T Consensus       310 ~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~--~~~~-~~~~~~l~~~l~~~~~~~r~aa  386 (462)
T 1ibr_B          310 TSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCE--DDIV-PHVLPFIKEHIKNPDWRYRDAA  386 (462)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTT--TTHH-HHHHHHHHHHTTCSSHHHHHHH
T ss_pred             hhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhcc--HHHH-HHHHHHHHHHhcCCChHHHHHH
Confidence            0   0 1   2233777777753       245789999999999985422  1222 2467788888899999999999


Q ss_pred             HHHHHHhcCCh--h-hHHHHHhCCChHHHHHhccCCCHHHHHHHHHHHHHhcCCC
Q 044999          360 SGAIAQLSYNE--A-DRVALADAGAVPIMIELLHDESEELRDNAAESLINFSEDP  411 (461)
Q Consensus       360 ~~~L~~l~~~~--~-~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~  411 (461)
                      +.+++.++...  + .+..+  ..++|.++..++++++.+|..|+++|.+++..-
T Consensus       387 l~~l~~l~~~~~~~~~~~~l--~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~  439 (462)
T 1ibr_B          387 VMAFGCILEGPEPSQLKPLV--IQAMPTLIELMKDPSVVVRDTAAWTVGRICELL  439 (462)
T ss_dssp             HHHHHHTSSSSCTTTTCTTT--TTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHG
T ss_pred             HHHHHHHhcCCcHHHHHHHH--HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhc
Confidence            99999999832  1 11111  457899999999999999999999999998543

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A

Probab=99.59  E-value=1.9e-12  Score=135.44  Aligned_cols=386  Identities=12%  Similarity=0.067  Sum_probs=259.0

Q ss_pred             HhHHHHHHHhhcC--CHHHHHHHHHHHHhhc-CC-C-------------chhHHHh-hHHHHHHhhccCCCCCCCcHHHH
Q 044999           10 EAFNRFEQAVVSG--SEALQVKALTKLARVS-KF-A-------------PQDILAA-TIPILARLLGENNFSGNLTRSIQ   71 (461)
Q Consensus        10 ~~~~~l~~ll~~~--~~~~~~~a~~~l~~la-~~-~-------------~~~~l~~-~i~~l~~~l~~~~~~~~~~~~~~   71 (461)
                      +.+..+.+.+.+.  ++.+|..|+..|.+.. .. .             ....... +-+.+++.|..      +++.++
T Consensus        39 ~~~~~l~~il~~~~~~~~vR~~A~~~lk~~i~~~w~~~~~~~~~~~~~~l~~~~~~~ik~~ll~~l~~------~~~~vr  112 (861)
T 2bpt_A           39 QFAGLSSQVLIDENTKLEGRILAALTLKNELVSKDSVKTQQFAQRWITQVSPEAKNQIKTNALTALVS------IEPRIA  112 (861)
T ss_dssp             HHHHHHHHHHTCTTSCHHHHHHHHHHHHTTTCCSSHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHTC------SSHHHH
T ss_pred             HHHHHHHHHHhCCCCChHHHHHHHHHHHhhccCcChHHHHHHHHhHhhhCCHHHHHHHHHHHHHHHCC------CchHHH
Confidence            4445566667653  6899999999999986 21 0             1111122 55677788875      345676


Q ss_pred             HHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHhcCCCC-CHHHHHHHHHHHHHHhccCh-hhH-HHHHHcCCHHHHHHHh
Q 044999           72 QAAAYCLKQIASQADGALATEIGQSGVINSVLRLFPQS-DDSFRTVLVKCLRVFVTFGN-ENR-VIVARNGGLEIVIDLL  148 (461)
Q Consensus        72 ~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~ll~~~-~~~~~~~~~~~l~~l~~~~~-~~~-~~~~~~g~i~~L~~ll  148 (461)
                      ..++.++..++.. +....   .-...++.|++.+.++ ++.++..+..++..++..-. +.+ -.-.....++.+...+
T Consensus       113 ~~~~~~l~~i~~~-~~p~~---~w~~ll~~L~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~ll~~l~~~l  188 (861)
T 2bpt_A          113 NAAAQLIAAIADI-ELPHG---AWPELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGA  188 (861)
T ss_dssp             HHHHHHHHHHHHH-HGGGT---CCHHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHh-hCccc---ccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHHHHHhh
Confidence            6688999998873 11100   0023578889999988 89989899888888775321 110 0000112456667777


Q ss_pred             cCC--ChHHHHHHHHHHHHhhC-ChHHH-HHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCchh--HHHHHhcCC
Q 044999          149 NSC--NDGTRRYLLEILSALAL-LREVR-RVLICLGGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRA--RRLLVELGV  222 (461)
Q Consensus       149 ~~~--~~~~~~~a~~~L~~l~~-~~~~~-~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~--~~~~~~~~~  222 (461)
                      .+.  ++.+|..|+.++..+.. ....- ........++.+...+.+.++.+|..++.++..++...+.  ...+. ...
T Consensus       189 ~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~-~~l  267 (861)
T 2bpt_A          189 QSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYME-QAL  267 (861)
T ss_dssp             STTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGGGCHHHHH-HTH
T ss_pred             cCCCCCHHHHHHHHHHHHHHHHHHHHHccChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
Confidence            776  78999999999998752 12110 0000122566777788888999999999999999876543  22222 156


Q ss_pred             hHHHHHhcccCCHHHHHHHHHHHHHHhcCccc---------------hhhhh--hcCCHHHHHHHhCCC-------ChhH
Q 044999          223 IPGLVELFHIGDWTTKLVAGNTLGVVAAHVEY---------------ITPVA--EAGAIPLYAELLQGP-------DSTG  278 (461)
Q Consensus       223 i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~---------------~~~~~--~~g~i~~L~~ll~~~-------~~~~  278 (461)
                      ++.+...+.+.++.++..++.++..++.....               ...+.  -..++|.++..+...       ++.+
T Consensus       268 ~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~d~~d~~~~~  347 (861)
T 2bpt_A          268 YALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNV  347 (861)
T ss_dssp             HHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHHHHHTTCCCCC-CCCCCHH
T ss_pred             HHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHhcccccccccCcH
Confidence            77777888888999999999999888764210               00111  134577888888642       3578


Q ss_pred             HHHHHHHHHHhccCc--ccHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhCCCC--chhHHhhcCCHHHHHHhhcCCCHH
Q 044999          279 KEISEDVFCILAVSE--ANANAIAEHLVRILREGDNEANAAAADVLWDLAGYKH--SVPVIRNSGAIPILVNLLRGENDE  354 (461)
Q Consensus       279 ~~~a~~~L~~l~~~~--~~~~~i~~~l~~ll~~~~~~~~~~a~~~L~~l~~~~~--~~~~l~~~g~i~~L~~ll~~~~~~  354 (461)
                      +..+..+|..++...  .....+.+.+.+.+.+.++.+|+.|+.+++.++....  ...... ..+++.|+..+.++++.
T Consensus       348 r~~a~~~L~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l-~~il~~l~~~l~d~~~~  426 (861)
T 2bpt_A          348 SMSAGACLQLFAQNCGNHILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYV-HQALPSILNLMNDQSLQ  426 (861)
T ss_dssp             HHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHHHGGGCSCHH
T ss_pred             HHHHHHHHHHHHHHccHhHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHHHHHcCCCcHH
Confidence            999999999886432  2333444888888888899999999999999996532  111122 24788899999999999


Q ss_pred             HHHHHHHHHHHhcCC--hhh--HHHHHhCCChHHHHHhccCCCHHHHHHHHHHHHHhcCC
Q 044999          355 VREKVSGAIAQLSYN--EAD--RVALADAGAVPIMIELLHDESEELRDNAAESLINFSED  410 (461)
Q Consensus       355 v~~~a~~~L~~l~~~--~~~--~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~  410 (461)
                      ++..+++++++++..  +..  ...+  ...++.++..+++. +.++..+++++.+++..
T Consensus       427 vr~~a~~~l~~l~~~~~~~~~~~~~~--~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~  483 (861)
T 2bpt_A          427 VKETTAWCIGRIADSVAESIDPQQHL--PGVVQACLIGLQDH-PKVATNCSWTIINLVEQ  483 (861)
T ss_dssp             HHHHHHHHHHHHHHHHGGGSCTTTTH--HHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhhhcCCHHHH--HHHHHHHHHHhccC-hHHHHHHHHHHHHHHHh
Confidence            999999999999862  110  1111  12467788888665 99999999999988753

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16

Probab=99.58  E-value=2.6e-13  Score=122.11  Aligned_cols=229  Identities=13%  Similarity=0.098  Sum_probs=180.8

Q ss_pred             HHcCCHHHHHHHhcCCChHHHHHHHHHHHHhhCChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCchhHH
Q 044999          136 ARNGGLEIVIDLLNSCNDGTRRYLLEILSALALLREVRRVLICLGGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRARR  215 (461)
Q Consensus       136 ~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~  215 (461)
                      ...+.++.|++.|+++++.+|..|+.+|.++..          .+.++.++.++.++++.+|..++.+|+.+........
T Consensus        20 ~~~~~i~~L~~~L~~~~~~vr~~A~~~L~~~~~----------~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~~~   89 (280)
T 1oyz_A           20 CKKLNDDELFRLLDDHNSLKRISSARVLQLRGG----------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCED   89 (280)
T ss_dssp             HHTSCHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTHH
T ss_pred             HHHhhHHHHHHHHHcCCHHHHHHHHHHHHccCC----------chHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccch
Confidence            355689999999999999999999999998862          2357889999999999999999999999864433211


Q ss_pred             HHHhcCChHHHHH-hcccCCHHHHHHHHHHHHHHhcC-ccchhhhhhcCCHHHHHHHhCCCChhHHHHHHHHHHHhccCc
Q 044999          216 LLVELGVIPGLVE-LFHIGDWTTKLVAGNTLGVVAAH-VEYITPVAEAGAIPLYAELLQGPDSTGKEISEDVFCILAVSE  293 (461)
Q Consensus       216 ~~~~~~~i~~L~~-ll~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~  293 (461)
                      .     .++.|.. ++.++++.++..++.+|+++... +...     ...++.|...+.++++.++..++.+|.++....
T Consensus        90 ~-----l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~~~-----~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~~~  159 (280)
T 1oyz_A           90 N-----VFNILNNMALNDKSACVRATAIESTAQRCKKNPIYS-----PKIVEQSQITAFDKSTNVRRATAFAISVINDKA  159 (280)
T ss_dssp             H-----HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGGH-----HHHHHHHHHHTTCSCHHHHHHHHHHHHTC---C
T ss_pred             H-----HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCccc-----HHHHHHHHHHhhCCCHHHHHHHHHHHHhcCCHH
Confidence            1     2334442 45678999999999999999743 2111     234789999999999999999999999885421


Q ss_pred             ccHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCchhHHhhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCChhhH
Q 044999          294 ANANAIAEHLVRILREGDNEANAAAADVLWDLAGYKHSVPVIRNSGAIPILVNLLRGENDEVREKVSGAIAQLSYNEADR  373 (461)
Q Consensus       294 ~~~~~i~~~l~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~  373 (461)
                           ..+.|+.++.++++.++..|+.+|..+...        ....++.|..++.++++.++..++.+|+++..     
T Consensus       160 -----~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~--------~~~~~~~L~~~l~d~~~~vR~~A~~aL~~~~~-----  221 (280)
T 1oyz_A          160 -----TIPLLINLLKDPNGDVRNWAAFAININKYD--------NSDIRDCFVEMLQDKNEEVRIEAIIGLSYRKD-----  221 (280)
T ss_dssp             -----CHHHHHHHHTCSSHHHHHHHHHHHHHHTCC--------CHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTC-----
T ss_pred             -----HHHHHHHHHcCCCHHHHHHHHHHHHhhccC--------cHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCC-----
Confidence                 348889999999999999999999998532        12457889999999999999999999999872     


Q ss_pred             HHHHhCCChHHHHHhccCCCHHHHHHHHHHHHHhcC
Q 044999          374 VALADAGAVPIMIELLHDESEELRDNAAESLINFSE  409 (461)
Q Consensus       374 ~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~  409 (461)
                           ...++.|+.++.+++  ++..+..+|..+..
T Consensus       222 -----~~~~~~L~~~l~d~~--vr~~a~~aL~~i~~  250 (280)
T 1oyz_A          222 -----KRVLSVLCDELKKNT--VYDDIIEAAGELGD  250 (280)
T ss_dssp             -----GGGHHHHHHHHTSSS--CCHHHHHHHHHHCC
T ss_pred             -----HhhHHHHHHHhcCcc--HHHHHHHHHHhcCc
Confidence                 236889999997644  88999999998864

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A

Probab=99.57  E-value=1e-12  Score=137.71  Aligned_cols=385  Identities=12%  Similarity=0.044  Sum_probs=257.9

Q ss_pred             HHhHHHHHHHhhcC--CHHHHHHHHHHHHhhc--CCCc-----hh-------HHHh-hHHHHHHhhccCCCCCCCcHHHH
Q 044999            9 EEAFNRFEQAVVSG--SEALQVKALTKLARVS--KFAP-----QD-------ILAA-TIPILARLLGENNFSGNLTRSIQ   71 (461)
Q Consensus         9 ~~~~~~l~~ll~~~--~~~~~~~a~~~l~~la--~~~~-----~~-------~l~~-~i~~l~~~l~~~~~~~~~~~~~~   71 (461)
                      .+.+..+...+.++  ++.+|..|+..|.+..  ....     ..       .... +-+.+++.|..    .+  +.+ 
T Consensus        34 ~~~~~~L~~~l~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~w~~l~~~~~~~ik~~ll~~l~~----~~--~~~-  106 (876)
T 1qgr_A           34 PTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLHTLGT----ET--YRP-  106 (876)
T ss_dssp             HHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTT----CC--SSS-
T ss_pred             hhHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccccchHhHHHHHhhhccCCHHHHHHHHHHHHHHhCC----Cc--HHH-
Confidence            44556677777764  5889999999998865  2111     11       1111 44557777775    33  234 


Q ss_pred             HHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHhcCCCC--CHHHHHHHHHHHHHHhccChhhHHHHH--HcCCHHHHHHH
Q 044999           72 QAAAYCLKQIASQADGALATEIGQSGVINSVLRLFPQS--DDSFRTVLVKCLRVFVTFGNENRVIVA--RNGGLEIVIDL  147 (461)
Q Consensus        72 ~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~ll~~~--~~~~~~~~~~~l~~l~~~~~~~~~~~~--~~g~i~~L~~l  147 (461)
                      ..++.++..++..  .....  .-...++.+++.+.++  ++.++..+..++..++..-..  ..+.  -...++.+...
T Consensus       107 ~~~~~~l~~i~~~--~~~~~--~w~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~--~~~~~~~~~ll~~l~~~  180 (876)
T 1qgr_A          107 SSASQCVAGIACA--EIPVN--QWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDP--EQLQDKSNEILTAIIQG  180 (876)
T ss_dssp             CHHHHHHHHHHHH--HGGGT--CCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCH--HHHGGGHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHh--hCccc--ccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCH--hhHHhHHHHHHHHHHHh
Confidence            5577888888863  11000  0124578889999888  889899999999888753211  1111  12345666777


Q ss_pred             hcCC--ChHHHHHHHHHHHHhhCC-hHHH-HHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCchh-HHHHHhcCC
Q 044999          148 LNSC--NDGTRRYLLEILSALALL-REVR-RVLICLGGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRA-RRLLVELGV  222 (461)
Q Consensus       148 l~~~--~~~~~~~a~~~L~~l~~~-~~~~-~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~-~~~~~~~~~  222 (461)
                      +.+.  +..+|..|+.++..+... .... ........++.+...+.+.++++|..++.++..+....+. -.......+
T Consensus       181 l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l  260 (876)
T 1qgr_A          181 MRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPAL  260 (876)
T ss_dssp             HSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTH
T ss_pred             hcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            7776  578999999999988732 2211 1111122577777788888899999999999999875544 112222357


Q ss_pred             hHHHHHhcccCCHHHHHHHHHHHHHHhcCcc-------------------chhhhh--hcCCHHHHHHHhC-------CC
Q 044999          223 IPGLVELFHIGDWTTKLVAGNTLGVVAAHVE-------------------YITPVA--EAGAIPLYAELLQ-------GP  274 (461)
Q Consensus       223 i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~-------------------~~~~~~--~~g~i~~L~~ll~-------~~  274 (461)
                      ++.++..+.+.++.++..++.++..++....                   ......  -..+++.++..+.       +.
T Consensus       261 ~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~  340 (876)
T 1qgr_A          261 FAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDD  340 (876)
T ss_dssp             HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTT
T ss_pred             HHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhhccccccccc
Confidence            8888888888889999999999888875410                   000100  0234667777775       23


Q ss_pred             ChhHHHHHHHHHHHhccCc--ccHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhCCCC--chhHHhhcCCHHHHHHhhcC
Q 044999          275 DSTGKEISEDVFCILAVSE--ANANAIAEHLVRILREGDNEANAAAADVLWDLAGYKH--SVPVIRNSGAIPILVNLLRG  350 (461)
Q Consensus       275 ~~~~~~~a~~~L~~l~~~~--~~~~~i~~~l~~ll~~~~~~~~~~a~~~L~~l~~~~~--~~~~l~~~g~i~~L~~ll~~  350 (461)
                      ++.+|..+..+|..++...  ..-..+.+.+...+.+.++.+|..|+.+++.++....  .... .-.+.++.++..+.+
T Consensus       341 ~~~~r~~a~~~l~~l~~~~~~~~~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~-~~~~~l~~l~~~l~d  419 (876)
T 1qgr_A          341 DWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKP-LVIQAMPTLIELMKD  419 (876)
T ss_dssp             CCCHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHH-HHHHHHHHHHHHHTC
T ss_pred             ccHHHHHHHHHHHHHHHHCcHhhHHHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHH-HHHHHHHHHHHHhCC
Confidence            5789999999998885432  2233344778888888999999999999999996533  1222 223578899999999


Q ss_pred             CCHHHHHHHHHHHHHhcC-Chhh---HHHHHhCCChHHHHHhccCCCHHHHHHHHHHHHHhcCC
Q 044999          351 ENDEVREKVSGAIAQLSY-NEAD---RVALADAGAVPIMIELLHDESEELRDNAAESLINFSED  410 (461)
Q Consensus       351 ~~~~v~~~a~~~L~~l~~-~~~~---~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~  410 (461)
                      +++.+|..+++++.+++. .+..   ...+  ...++.|+..+.+. +.++..++++|.+++..
T Consensus       420 ~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l--~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~  480 (876)
T 1qgr_A          420 PSVVVRDTAAWTVGRICELLPEAAINDVYL--APLLQCLIEGLSAE-PRVASNVCWAFSSLAEA  480 (876)
T ss_dssp             SSHHHHHHHHHHHHHHHHHCGGGTSSTTTH--HHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHhCchhcccHHHH--HHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHH
Confidence            999999999999999997 3321   1111  13467778888664 89999999999998743

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A

Probab=99.57  E-value=1.7e-13  Score=132.65  Aligned_cols=345  Identities=11%  Similarity=0.033  Sum_probs=234.2

Q ss_pred             HhHHHHHHHhhcC--CHHHHHHHHHHHHhhc-CC-C------------chhHHHh-hHHHHHHhhccCCCCCCCcHHHHH
Q 044999           10 EAFNRFEQAVVSG--SEALQVKALTKLARVS-KF-A------------PQDILAA-TIPILARLLGENNFSGNLTRSIQQ   72 (461)
Q Consensus        10 ~~~~~l~~ll~~~--~~~~~~~a~~~l~~la-~~-~------------~~~~l~~-~i~~l~~~l~~~~~~~~~~~~~~~   72 (461)
                      +.+..+..++.+.  ++.+|..|+..|.++. .. .            ....... +-..++..|..    .+.  .+ .
T Consensus        35 ~~~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~~~~l~~~~~~~ik~~ll~~l~~----~~~--~v-~  107 (462)
T 1ibr_B           35 TFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLQTLGT----ETY--RP-S  107 (462)
T ss_dssp             HHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTC----CCS--SS-C
T ss_pred             HHHHHHHHHHHcCCCChHHHHHHHHHHHHhccccchHHHHHHHhhhhcCCHHHHHHHHHHHHHHhCC----CCc--hh-h
Confidence            3445566677665  6899999999999987 21 1            1111222 44557777775    332  35 5


Q ss_pred             HHHHHHHHHHhcCCchhHHHHHhcCCHHHHHhcCCCC--CHHHHHHHHHHHHHHhccC-hhhHHHHHHcCCHHHHHHHhc
Q 044999           73 AAAYCLKQIASQADGALATEIGQSGVINSVLRLFPQS--DDSFRTVLVKCLRVFVTFG-NENRVIVARNGGLEIVIDLLN  149 (461)
Q Consensus        73 ~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~ll~~~--~~~~~~~~~~~l~~l~~~~-~~~~~~~~~~g~i~~L~~ll~  149 (461)
                      .++.++..++.. .... .  .-.+.++.|++.+.++  ++.++..++.++..++... ++.-.... ...++.+...++
T Consensus       108 ~~~~~i~~ia~~-~~~~-~--~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~-~~ll~~l~~~l~  182 (462)
T 1ibr_B          108 SASQCVAGIACA-EIPV-N--QWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKS-NEILTAIIQGMR  182 (462)
T ss_dssp             SHHHHHHHHHHH-HGGG-T--CCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGH-HHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHH-hccc-c--ccHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHH-HHHHHHHHHHhC
Confidence            588888888873 1110 0  1135689999999888  8898999999999888632 11111111 135777888888


Q ss_pred             CC--ChHHHHHHHHHHHHhhCC-hHHHH-HHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCchh--HHHHHhcCCh
Q 044999          150 SC--NDGTRRYLLEILSALALL-REVRR-VLICLGGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRA--RRLLVELGVI  223 (461)
Q Consensus       150 ~~--~~~~~~~a~~~L~~l~~~-~~~~~-~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~--~~~~~~~~~i  223 (461)
                      +.  ++.+|..|+.++.++... .+... .....-.++.+...+.+.+++++..++.++..++...+.  ...+. .+++
T Consensus       183 ~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~-~~l~  261 (462)
T 1ibr_B          183 KEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMG-PALF  261 (462)
T ss_dssp             TTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTT-TTHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Confidence            87  689999999999987632 21110 111111466667777788999999999999999875543  22221 1567


Q ss_pred             HHHHHhcccCCHHHHHHHHHHHHHHhcCc------------------cchhhhhh---cCCHHHHHHHhCC-------CC
Q 044999          224 PGLVELFHIGDWTTKLVAGNTLGVVAAHV------------------EYITPVAE---AGAIPLYAELLQG-------PD  275 (461)
Q Consensus       224 ~~L~~ll~~~~~~~~~~a~~~L~~l~~~~------------------~~~~~~~~---~g~i~~L~~ll~~-------~~  275 (461)
                      +.++..+++.++.++..++..+..++...                  .....+.+   ..++|.++..+..       .+
T Consensus       262 ~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~  341 (462)
T 1ibr_B          262 AITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDD  341 (462)
T ss_dssp             HHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTC
T ss_pred             HHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhccccccccc
Confidence            77778888889999999999988887542                  01111111   2356777777743       24


Q ss_pred             hhHHHHHHHHHHHhccCcc--cHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhCCCC--chhHHhhcCCHHHHHHhhcCC
Q 044999          276 STGKEISEDVFCILAVSEA--NANAIAEHLVRILREGDNEANAAAADVLWDLAGYKH--SVPVIRNSGAIPILVNLLRGE  351 (461)
Q Consensus       276 ~~~~~~a~~~L~~l~~~~~--~~~~i~~~l~~ll~~~~~~~~~~a~~~L~~l~~~~~--~~~~l~~~g~i~~L~~ll~~~  351 (461)
                      +.++..+..+|..++..-.  ....+.+.+...+.+.++.+|..|+.+++.++....  ..... -..+++.++..+.++
T Consensus       342 ~~~r~~a~~~L~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~-l~~~~~~l~~~l~d~  420 (462)
T 1ibr_B          342 WNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPL-VIQAMPTLIELMKDP  420 (462)
T ss_dssp             CSHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTT-TTTHHHHHHHGGGCS
T ss_pred             chHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHH-HHHHHHHHHHHhcCC
Confidence            6789999999999854322  223333888888999999999999999999996432  11111 256899999999999


Q ss_pred             CHHHHHHHHHHHHHhcC
Q 044999          352 NDEVREKVSGAIAQLSY  368 (461)
Q Consensus       352 ~~~v~~~a~~~L~~l~~  368 (461)
                      ++.+|..|+++|.+++.
T Consensus       421 ~~~Vr~~a~~~l~~~~~  437 (462)
T 1ibr_B          421 SVVVRDTAAWTVGRICE  437 (462)
T ss_dssp             CHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHH
Confidence            99999999999999997

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A

Probab=99.51  E-value=2e-12  Score=140.23  Aligned_cols=384  Identities=13%  Similarity=0.119  Sum_probs=258.9

Q ss_pred             cHHHhHHHHHHHhhcCCHHHHHHHHHHHHhhc-CCCch--------hHHHhhHHHHHHhhccCCCCCCCcHHHHHHHHHH
Q 044999            7 NWEEAFNRFEQAVVSGSEALQVKALTKLARVS-KFAPQ--------DILAATIPILARLLGENNFSGNLTRSIQQAAAYC   77 (461)
Q Consensus         7 ~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~la-~~~~~--------~~l~~~i~~l~~~l~~~~~~~~~~~~~~~~a~~~   77 (461)
                      .++..++.+...+.++++.+|..|+.+++.++ .....        ....+.+|.+++.+..     ++++.++..|+.+
T Consensus        83 ~~~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~-----~~~~~~~~~al~~  157 (1230)
T 1u6g_C           83 QVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAK-----QEDVSVQLEALDI  157 (1230)
T ss_dssp             HHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSC-----CSCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcC-----CCchHHHHHHHHH
Confidence            46677788888888888899999999999888 22221        1233489999999972     2456677779999


Q ss_pred             HHHHHhcCCchhHHHHHhcCCHHHHHhcCCCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhcCCC-hHHH
Q 044999           78 LKQIASQADGALATEIGQSGVINSVLRLFPQSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLNSCN-DGTR  156 (461)
Q Consensus        78 L~~l~~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~-~~~~  156 (461)
                      |..++.........  .-...++.+...+.++++.++..++.++..++...++   .+ -...++.++..+...+ +.++
T Consensus       158 l~~~~~~~~~~l~~--~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~---~~-~~~~l~~l~~~L~~~~~~~~r  231 (1230)
T 1u6g_C          158 MADMLSRQGGLLVN--FHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGN---IV-FVDLIEHLLSELSKNDSMSTT  231 (1230)
T ss_dssp             HHHHHHHTCSSCTT--THHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC--------CTTHHHHHHHHHHHTCSSCSC
T ss_pred             HHHHHHHhHhHHHH--HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCH---HH-HHHHHHHHHHHhccCCchhHH
Confidence            99998631111110  1133577888899999999999999999988864422   12 2345778888775543 4677


Q ss_pred             HHHHHHHHHhhCC-hH-HHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCchh--HHHHHhcCChHHHHHhccc
Q 044999          157 RYLLEILSALALL-RE-VRRVLICLGGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRA--RRLLVELGVIPGLVELFHI  232 (461)
Q Consensus       157 ~~a~~~L~~l~~~-~~-~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~--~~~~~~~~~i~~L~~ll~~  232 (461)
                      ..++.++..++.. .. ...  .-...++.++..+.+.++++|..++.++..++...+.  ...+  ...++.++..+..
T Consensus       232 ~~a~~~l~~l~~~~~~~~~~--~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~l--~~li~~ll~~l~~  307 (1230)
T 1u6g_C          232 RTYIQCIAAISRQAGHRIGE--YLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHV--STIINICLKYLTY  307 (1230)
T ss_dssp             TTHHHHHHHHHHHSSGGGTT--SCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHHHH--HHHHHHHTTCCCC
T ss_pred             HHHHHHHHHHHHHhHHHHHH--HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHChHHHHHhH--HHHHHHHHHHhCC
Confidence            7888888888732 21 111  1135789999999988889999999999988775433  2222  1234444443321


Q ss_pred             -------------------------------------CCHHHHHHHHHHHHHHhcC-ccchhhhhhcCCHHHHHHHhCCC
Q 044999          233 -------------------------------------GDWTTKLVAGNTLGVVAAH-VEYITPVAEAGAIPLYAELLQGP  274 (461)
Q Consensus       233 -------------------------------------~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~g~i~~L~~ll~~~  274 (461)
                                                           ..+.++..|+.++..++.. ++.-..+ -..+++.+...+.+.
T Consensus       308 d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~-~~~l~~~l~~~l~d~  386 (1230)
T 1u6g_C          308 DPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEF-YKTVSPALISRFKER  386 (1230)
T ss_dssp             C------------------------------------CTTHHHHHHHHHHHHHHTTCCTTHHHH-HTTTHHHHHSTTSCS
T ss_pred             CCCCCCcccccccccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhHHHHH-HHHHHHHHHHHcCCC
Confidence                                                 1235688899999988875 2211112 235678888888888


Q ss_pred             ChhHHHHHHHHHHHhccCc-----------------ccHHH-------HHHHHHHHhccCCHHHHHHHHHHHHHhhCC-C
Q 044999          275 DSTGKEISEDVFCILAVSE-----------------ANANA-------IAEHLVRILREGDNEANAAAADVLWDLAGY-K  329 (461)
Q Consensus       275 ~~~~~~~a~~~L~~l~~~~-----------------~~~~~-------i~~~l~~ll~~~~~~~~~~a~~~L~~l~~~-~  329 (461)
                      ++.+|..+..++..+...-                 .....       +.+.+.+.+++.++.++..++.+|..++.. +
T Consensus       387 ~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~~~  466 (1230)
T 1u6g_C          387 EENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLP  466 (1230)
T ss_dssp             SSHHHHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHST
T ss_pred             chHHHHHHHHHHHHHHHHhccccccccCccccccccchHHHHHHHhhHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHch
Confidence            9999999998887764211                 11111       115566668889999999999999998853 2


Q ss_pred             CchhHHhhcCCHHHHHHhhcCCCH--HHHHHHHHHHHHhcC--ChhhHHHHHhCCChHHHHHhccCCCHHHHHHHHHHHH
Q 044999          330 HSVPVIRNSGAIPILVNLLRGEND--EVREKVSGAIAQLSY--NEADRVALADAGAVPIMIELLHDESEELRDNAAESLI  405 (461)
Q Consensus       330 ~~~~~l~~~g~i~~L~~ll~~~~~--~v~~~a~~~L~~l~~--~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~  405 (461)
                      ..... .-...++.+...+.+.++  .++..++..+..+..  .++.-..+. ...+|.|+..+.+.+..++..++.++.
T Consensus       467 ~~l~~-~l~~ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~l-~~llp~L~~~l~d~~~~v~~~al~~l~  544 (1230)
T 1u6g_C          467 GALTQ-HIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHV-QALVPPVVACVGDPFYKITSEALLVTQ  544 (1230)
T ss_dssp             TTTGG-GHHHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCGGGGHHHH-TTTHHHHHHHHTCSSHHHHHHHHHHHH
T ss_pred             hhhHH-HHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHHHhCCHHHHHhHH-HHHHHHHHHHHcccchHHHHHHHHHHH
Confidence            22111 123467888888887754  889999999988865  333222222 357999999998889999888888888


Q ss_pred             Hhc
Q 044999          406 NFS  408 (461)
Q Consensus       406 ~l~  408 (461)
                      .++
T Consensus       545 ~l~  547 (1230)
T 1u6g_C          545 QLV  547 (1230)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            776

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A

Probab=99.51  E-value=3.2e-12  Score=127.25  Aligned_cols=323  Identities=14%  Similarity=0.147  Sum_probs=230.1

Q ss_pred             HhHHHHHHHhhcCCHHHHHHHHHHHHhhcCCCchhHHHhhHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHhcCCchh
Q 044999           10 EAFNRFEQAVVSGSEALQVKALTKLARVSKFAPQDILAATIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQADGAL   89 (461)
Q Consensus        10 ~~~~~l~~ll~~~~~~~~~~a~~~l~~la~~~~~~~l~~~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~   89 (461)
                      ..+...++++.+.+...|+.+-..+..+++..+ +.+.-++..+.+-+++      +++-++..|+.+|+++..   ++.
T Consensus        74 ~~~~~vvkl~~s~~~~~Krl~YL~l~~~~~~~~-e~~~L~iN~l~kDl~~------~n~~ir~lALr~L~~i~~---~e~  143 (621)
T 2vgl_A           74 FGHMEAVNLLSSNRYTEKQIGYLFISVLVNSNS-ELIRLINNAIKNDLAS------RNPTFMGLALHCIANVGS---REM  143 (621)
T ss_dssp             SCHHHHHHGGGCSCHHHHHHHHHHHHHSCCCCH-HHHHHHHHHHHHHHHS------CCHHHHHHHHHHHHHHCC---HHH
T ss_pred             hhHHHHHHHhcCCCHHHHHHHHHHHHHHccCCc-HHHHHHHHHHHHhcCC------CCHHHHHHHHHHhhccCC---HHH
Confidence            356778888999999999999889988883322 3333378888888876      345566669999999875   222


Q ss_pred             HHHHHhcCCHHHHHhcC--CCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHhh
Q 044999           90 ATEIGQSGVINSVLRLF--PQSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLNSCNDGTRRYLLEILSALA  167 (461)
Q Consensus        90 ~~~~~~~~~l~~L~~ll--~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~  167 (461)
                      .+     ..++.+.+++  .+.++.|++.|+.++..+...+++..   ...+.++.+.++|.+.++.++..|+.++..++
T Consensus       144 ~~-----~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~~---~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~  215 (621)
T 2vgl_A          144 AE-----AFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDLV---PMGDWTSRVVHLLNDQHLGVVTAATSLITTLA  215 (621)
T ss_dssp             HH-----HHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGGC---CCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred             HH-----HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhhc---CchhHHHHHHHHhCCCCccHHHHHHHHHHHHH
Confidence            22     3457788888  89999999999999998887664432   22578999999999999999999999999998


Q ss_pred             -CChHHHHHHHhcCCHHHHH----HHHcCC-------------CHHHHHHHHHHHHHhhcCc-hh-HHHHHhcCChHHHH
Q 044999          168 -LLREVRRVLICLGGLRYLV----EAVSFG-------------SMVSRERACQAIGLLAVTG-RA-RRLLVELGVIPGLV  227 (461)
Q Consensus       168 -~~~~~~~~~~~~~~l~~l~----~~l~~~-------------~~~~~~~a~~~L~~l~~~~-~~-~~~~~~~~~i~~L~  227 (461)
                       .+++.   +  ...++.++    +++..+             ++..+...++.+..++... +. ...+.+  .+..++
T Consensus       216 ~~~~~~---~--~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~~--~L~~il  288 (621)
T 2vgl_A          216 QKNPEE---F--KTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTE--CLETIL  288 (621)
T ss_dssp             HHCHHH---H--TTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHHH--HHHHHH
T ss_pred             HhChHH---H--HHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHHH--HHHHHH
Confidence             34432   1  12333333    343221             6788999999999888643 22 444443  344444


Q ss_pred             Hhcc---------cCC--HHHHHHHHHHHHHHhcCccchhhhhhcCCHHHHHHHhCCCChhHHHHHHHHHHHhccCcccH
Q 044999          228 ELFH---------IGD--WTTKLVAGNTLGVVAAHVEYITPVAEAGAIPLYAELLQGPDSTGKEISEDVFCILAVSEANA  296 (461)
Q Consensus       228 ~ll~---------~~~--~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~  296 (461)
                      ..+.         +.+  ..+...++.++..+...++...     .++..|..++.+.+++++..++..|..++......
T Consensus       289 ~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~~~~~~~~-----~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~~  363 (621)
T 2vgl_A          289 NKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHDSEPNLLV-----RACNQLGQFLQHRETNLRYLALESMCTLASSEFSH  363 (621)
T ss_dssp             HHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHCCCHHHHH-----HHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTTH
T ss_pred             HhhccCcccccccccchHHHHHHHHHHHHHhcCCcHHHHH-----HHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCcH
Confidence            3321         112  2677778888888763332222     24678889998889999999999999997654322


Q ss_pred             HHHH---HHHHHHhc-cCCHHHHHHHHHHHHHhhCCCCchhHHhhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcC
Q 044999          297 NAIA---EHLVRILR-EGDNEANAAAADVLWDLAGYKHSVPVIRNSGAIPILVNLLRGENDEVREKVSGAIAQLSY  368 (461)
Q Consensus       297 ~~i~---~~l~~ll~-~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~  368 (461)
                      ..+.   ..++.+++ ++++.++..++.+|..++.. .+.+.     ++..|..++.+.+.+.+..++.+++.++.
T Consensus       364 ~~~~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~~-~Nv~~-----Iv~eL~~yl~~~d~~~~~~~v~~I~~la~  433 (621)
T 2vgl_A          364 EAVKTHIETVINALKTERDVSVRQRAVDLLYAMCDR-SNAQQ-----IVAEMLSYLETADYSIREEIVLKVAILAE  433 (621)
T ss_dssp             HHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHCCH-HHHHH-----HHHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHHcCh-hhHHH-----HHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence            2233   77888888 88999999999999999854 33333     34458888888889999999999998886

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}

Probab=99.49  E-value=2.2e-12  Score=110.69  Aligned_cols=190  Identities=17%  Similarity=0.168  Sum_probs=158.9

Q ss_pred             cCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhcccCCHHHHHHHHHHHHHHhcCccchhhh
Q 044999          179 LGGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRARRLLVELGVIPGLVELFHIGDWTTKLVAGNTLGVVAAHVEYITPV  258 (461)
Q Consensus       179 ~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~  258 (461)
                      .+.++.|+..|.++++.+|..++..|+.+..          .+.++.|+.++.++++.++..++.+|+.+..        
T Consensus        18 ~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~--------   79 (211)
T 3ltm_A           18 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD--------   79 (211)
T ss_dssp             GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC--------
T ss_pred             HhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC--------
Confidence            4578999999999999999999999998743          3578999999999999999999999998753        


Q ss_pred             hhcCCHHHHHHHhCCCChhHHHHHHHHHHHhccCcccHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCchhHHhhc
Q 044999          259 AEAGAIPLYAELLQGPDSTGKEISEDVFCILAVSEANANAIAEHLVRILREGDNEANAAAADVLWDLAGYKHSVPVIRNS  338 (461)
Q Consensus       259 ~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~l~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~  338 (461)
                        .+.++.|+.++.++++.++..++.+|..+...     ...+.|+.++.++++.++..|+.+|+.+..          .
T Consensus        80 --~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~-----~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----------~  142 (211)
T 3ltm_A           80 --ERAVEPLIKALKDEDGWVRQSAAVALGQIGDE-----RAVEPLIKALKDEDWFVRIAAAFALGEIGD----------E  142 (211)
T ss_dssp             --GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG-----GGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------G
T ss_pred             --HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCcH-----HHHHHHHHHHhCCCHHHHHHHHHHHHHcCC----------H
Confidence              34589999999999999999999999998642     233788899999999999999999999843          3


Q ss_pred             CCHHHHHHhhcCCCHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhccCCCHHHHHHHHHHHHHhcCCCcc
Q 044999          339 GAIPILVNLLRGENDEVREKVSGAIAQLSYNEADRVALADAGAVPIMIELLHDESEELRDNAAESLINFSEDPLQ  413 (461)
Q Consensus       339 g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~  413 (461)
                      ..++.|..++.++++.++..++.+|..+..          ...++.|..+++++++.++..|..+|.++...+.+
T Consensus       143 ~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~~~~~  207 (211)
T 3ltm_A          143 RAVEPLIKALKDEDGWVRQSAADALGEIGG----------ERVRAAMEKLAETGTGFARKVAVNYLETHKSFNHH  207 (211)
T ss_dssp             GGHHHHHHHTTCSSHHHHHHHHHHHHHHCS----------HHHHHHHHHHHHHCCHHHHHHHHHHHHC-------
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------hhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCC
Confidence            478899999999999999999999999863          12478899999999999999999999999877654

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}

Probab=99.48  E-value=5e-12  Score=108.43  Aligned_cols=189  Identities=15%  Similarity=0.185  Sum_probs=159.2

Q ss_pred             hcCCHHHHHhcCCCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHhhCChHHHH
Q 044999           95 QSGVINSVLRLFPQSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLNSCNDGTRRYLLEILSALALLREVRR  174 (461)
Q Consensus        95 ~~~~l~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~  174 (461)
                      ..+.++.|++.|+++++.++..++..+..+..           .+.++.|++++.++++.+|..|+.+|..+..      
T Consensus        17 ~~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~------   79 (211)
T 3ltm_A           17 DPEKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD------   79 (211)
T ss_dssp             CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC------
T ss_pred             CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC------
Confidence            34568999999999999999999999887653           2468999999999999999999999988752      


Q ss_pred             HHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhcccCCHHHHHHHHHHHHHHhcCccc
Q 044999          175 VLICLGGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRARRLLVELGVIPGLVELFHIGDWTTKLVAGNTLGVVAAHVEY  254 (461)
Q Consensus       175 ~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~  254 (461)
                          .+.++.++..+.++++.+|..++.+|+.+..          .+.++.|+.++.++++.++..++.+|+.+..    
T Consensus        80 ----~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----  141 (211)
T 3ltm_A           80 ----ERAVEPLIKALKDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD----  141 (211)
T ss_dssp             ----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----
T ss_pred             ----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC----
Confidence                3578899999999999999999999999843          3478999999999999999999999999853    


Q ss_pred             hhhhhhcCCHHHHHHHhCCCChhHHHHHHHHHHHhccCcccHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhCCC
Q 044999          255 ITPVAEAGAIPLYAELLQGPDSTGKEISEDVFCILAVSEANANAIAEHLVRILREGDNEANAAAADVLWDLAGYK  329 (461)
Q Consensus       255 ~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~l~~ll~~~~~~~~~~a~~~L~~l~~~~  329 (461)
                            ...++.|..++.++++.++..++.+|..+..     ....+.|..++.++++.++..|..+|.++....
T Consensus       142 ------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~~~  205 (211)
T 3ltm_A          142 ------ERAVEPLIKALKDEDGWVRQSAADALGEIGG-----ERVRAAMEKLAETGTGFARKVAVNYLETHKSFN  205 (211)
T ss_dssp             ------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-----HHHHHHHHHHHHHCCHHHHHHHHHHHHC-----
T ss_pred             ------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----hhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCC
Confidence                  2358999999999999999999999999853     334478888999999999999999999998653

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A

Probab=99.47  E-value=2.2e-11  Score=131.98  Aligned_cols=381  Identities=13%  Similarity=0.119  Sum_probs=257.4

Q ss_pred             HhHHHHHHHhhcCCHHHHHHHHHHHHhhc-CCC--ch-hHHHhhHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHhcC
Q 044999           10 EAFNRFEQAVVSGSEALQVKALTKLARVS-KFA--PQ-DILAATIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQA   85 (461)
Q Consensus        10 ~~~~~l~~ll~~~~~~~~~~a~~~l~~la-~~~--~~-~~l~~~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~   85 (461)
                      ..++.+..-+.+.|+.+|..|...|.+.. .+.  .. ....+.++.+++.|..      .++.++..|+.+|..++..-
T Consensus         6 ~~l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d------~~~~vR~~A~~~L~~l~~~~   79 (1230)
T 1u6g_C            6 YHISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLED------KNGEVQNLAVKCLGPLVSKV   79 (1230)
T ss_dssp             HHHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTC------SSHHHHHHHHHHHHHHHTTS
T ss_pred             hHHHHHHHhcCCCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcC------CCHHHHHHHHHHHHHHHHhC
Confidence            45677777789999999999999988766 221  11 1233388888898874      45678888999999999741


Q ss_pred             CchhHHHHHhcCCHHHHHhcCCCCCHHHHHHHHHHHHHHhccChhh------HHHHHHcCCHHHHHHHhc-CCChHHHHH
Q 044999           86 DGALATEIGQSGVINSVLRLFPQSDDSFRTVLVKCLRVFVTFGNEN------RVIVARNGGLEIVIDLLN-SCNDGTRRY  158 (461)
Q Consensus        86 ~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~------~~~~~~~g~i~~L~~ll~-~~~~~~~~~  158 (461)
                      .+...     ...++.+.+.+.++++.+|..++.++..++..-...      ... .-...++.|++.+. +.++.++..
T Consensus        80 ~~~~~-----~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~-~~~~llp~L~~~l~~~~~~~~~~~  153 (1230)
T 1u6g_C           80 KEYQV-----ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAAN-VCKKITGRLTSAIAKQEDVSVQLE  153 (1230)
T ss_dssp             CHHHH-----HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHH-HHHHHHHHHHHHHSCCSCHHHHHH
T ss_pred             CHHHH-----HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHH-HHHHHHHHHHHHHcCCCchHHHHH
Confidence            22111     235678888888888888999998888777533221      111 12346888888888 578899999


Q ss_pred             HHHHHHHhhC--ChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhcccCC-H
Q 044999          159 LLEILSALAL--LREVRRVLICLGGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRARRLLVELGVIPGLVELFHIGD-W  235 (461)
Q Consensus       159 a~~~L~~l~~--~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~-~  235 (461)
                      |+.++..++.  .......  -...++.++..+.+++..+|..|+.+++.++...+...   -...++.++..+.+.+ .
T Consensus       154 al~~l~~~~~~~~~~l~~~--~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~~---~~~~l~~l~~~L~~~~~~  228 (1230)
T 1u6g_C          154 ALDIMADMLSRQGGLLVNF--HPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIV---FVDLIEHLLSELSKNDSM  228 (1230)
T ss_dssp             HHHHHHHHHHHTCSSCTTT--HHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC-------CTTHHHHHHHHHHHTCSS
T ss_pred             HHHHHHHHHHHhHhHHHHH--HHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHHH---HHHHHHHHHHHhccCCch
Confidence            9999999872  1111111  12356777788888899999999999999987654321   1235777777776443 4


Q ss_pred             HHHHHHHHHHHHHhcCccchhhhh--hcCCHHHHHHHhCCCChhHHHHHHHHHHHhccCc--ccH---HHHHHHHHHHhc
Q 044999          236 TTKLVAGNTLGVVAAHVEYITPVA--EAGAIPLYAELLQGPDSTGKEISEDVFCILAVSE--ANA---NAIAEHLVRILR  308 (461)
Q Consensus       236 ~~~~~a~~~L~~l~~~~~~~~~~~--~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~--~~~---~~i~~~l~~ll~  308 (461)
                      ..+..++.++..++.....  .+.  -..+++.++..+.+.++++|..+..++..++...  +..   ..+.+.+++.+.
T Consensus       229 ~~r~~a~~~l~~l~~~~~~--~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~l~~li~~ll~~l~  306 (1230)
T 1u6g_C          229 STTRTYIQCIAAISRQAGH--RIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLT  306 (1230)
T ss_dssp             CSCTTHHHHHHHHHHHSSG--GGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHTTCCC
T ss_pred             hHHHHHHHHHHHHHHHhHH--HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHChHHHHHhHHHHHHHHHHHhC
Confidence            5667788888888765211  121  1367899999999889999999999998885432  222   222255544442


Q ss_pred             c-------------------------------------CCHHHHHHHHHHHHHhhCC-CCchhHHhhcCCHHHHHHhhcC
Q 044999          309 E-------------------------------------GDNEANAAAADVLWDLAGY-KHSVPVIRNSGAIPILVNLLRG  350 (461)
Q Consensus       309 ~-------------------------------------~~~~~~~~a~~~L~~l~~~-~~~~~~l~~~g~i~~L~~ll~~  350 (461)
                      .                                     ..+++|..|+.++..++.. ++....+ -...++.++..+.+
T Consensus       307 ~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~-~~~l~~~l~~~l~d  385 (1230)
T 1u6g_C          307 YDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEF-YKTVSPALISRFKE  385 (1230)
T ss_dssp             CC------------------------------------CTTHHHHHHHHHHHHHHTTCCTTHHHH-HTTTHHHHHSTTSC
T ss_pred             CCCCCCCcccccccccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhHHHHH-HHHHHHHHHHHcCC
Confidence            1                                     1235788999999999864 3222222 24578888888888


Q ss_pred             CCHHHHHHHHHHHHHhcCC--h---------------hhHHHH--HhCCChHHHHHhccCCCHHHHHHHHHHHHHhcCC
Q 044999          351 ENDEVREKVSGAIAQLSYN--E---------------ADRVAL--ADAGAVPIMIELLHDESEELRDNAAESLINFSED  410 (461)
Q Consensus       351 ~~~~v~~~a~~~L~~l~~~--~---------------~~~~~~--~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~  410 (461)
                      .++.++..+..++..+...  .               +....+  .-...++.+.+.+++.++.++..++.++..++..
T Consensus       386 ~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~  464 (1230)
T 1u6g_C          386 REENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNV  464 (1230)
T ss_dssp             SSSHHHHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHHHHhccccccccCccccccccchHHHHHHHhhHHHHHHHHHhccCCHHHHHHHHHHHHHHHHH
Confidence            8899999999888877651  1               111111  1123456666678889999999999999988654

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}

Probab=99.45  E-value=5.5e-12  Score=107.29  Aligned_cols=184  Identities=18%  Similarity=0.195  Sum_probs=158.4

Q ss_pred             CCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhcccCCHHHHHHHHHHHHHHhcCccchhhhh
Q 044999          180 GGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRARRLLVELGVIPGLVELFHIGDWTTKLVAGNTLGVVAAHVEYITPVA  259 (461)
Q Consensus       180 ~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~  259 (461)
                      +..+.+++.|.++++.+|..|+.+|+.+..          .+.++.|+.++.++++.++..++.+|+.+..         
T Consensus        14 ~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~---------   74 (201)
T 3ltj_A           14 EKVEMYIKNLQDDSYYVRRAAAYALGKIGD----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD---------   74 (201)
T ss_dssp             HHHHHHHHHTTCSCHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC---------
T ss_pred             cchHHHHHHhcCCCHHHHHHHHHHHHhcCC----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC---------
Confidence            467889999999999999999999998743          3468999999999999999999999988753         


Q ss_pred             hcCCHHHHHHHhCCCChhHHHHHHHHHHHhccCcccHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCchhHHhhcC
Q 044999          260 EAGAIPLYAELLQGPDSTGKEISEDVFCILAVSEANANAIAEHLVRILREGDNEANAAAADVLWDLAGYKHSVPVIRNSG  339 (461)
Q Consensus       260 ~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~l~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g  339 (461)
                       ...++.|..++.++++.++..++.+|.++...     ...+.+..++.+.++.++..|+.+|+.+..          .+
T Consensus        75 -~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~-----~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----------~~  138 (201)
T 3ltj_A           75 -ERAVEPLIKALKDEDGWVRQSAAVALGQIGDE-----RAVEPLIKALKDEDWFVRIAAAFALGEIGD----------ER  138 (201)
T ss_dssp             -GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG-----GGHHHHHHHTTCSSHHHHHHHHHHHHHHTC----------GG
T ss_pred             -HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCcH-----HHHHHHHHHHcCCCHHHHHHHHHHHHHhCC----------HH
Confidence             24589999999999999999999999998542     233778889999999999999999999853          35


Q ss_pred             CHHHHHHhhcCCCHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhccCCCHHHHHHHHHHHHHhc
Q 044999          340 AIPILVNLLRGENDEVREKVSGAIAQLSYNEADRVALADAGAVPIMIELLHDESEELRDNAAESLINFS  408 (461)
Q Consensus       340 ~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~  408 (461)
                      .++.|..++.++++.++..++.+|+.+.. +         ..++.|..+++++++.++..|..+|..+.
T Consensus       139 ~~~~L~~~l~d~~~~vr~~A~~aL~~~~~-~---------~~~~~L~~~l~d~~~~vr~~A~~aL~~l~  197 (201)
T 3ltj_A          139 AVEPLIKALKDEDGWVRQSAADALGEIGG-E---------RVRAAMEKLAETGTGFARKVAVNYLETHK  197 (201)
T ss_dssp             GHHHHHHHTTCSSHHHHHHHHHHHHHHCS-H---------HHHHHHHHHHHHCCHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHhCc-h---------hHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence            78899999999999999999999999953 1         24788899999999999999999998874

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}

Probab=99.45  E-value=7.8e-12  Score=106.35  Aligned_cols=185  Identities=15%  Similarity=0.176  Sum_probs=158.5

Q ss_pred             cCCHHHHHhcCCCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHhhCChHHHHH
Q 044999           96 SGVINSVLRLFPQSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLNSCNDGTRRYLLEILSALALLREVRRV  175 (461)
Q Consensus        96 ~~~l~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~  175 (461)
                      .+..+.+++.|+++++.++..++..+..+..           .+.++.|++++.++++.+|..|+.+|..+..       
T Consensus        13 ~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~-------   74 (201)
T 3ltj_A           13 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD-------   74 (201)
T ss_dssp             HHHHHHHHHHTTCSCHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-------
T ss_pred             CcchHHHHHHhcCCCHHHHHHHHHHHHhcCC-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC-------
Confidence            3457889999999999999999999987653           2468899999999999999999999987752       


Q ss_pred             HHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhcccCCHHHHHHHHHHHHHHhcCccch
Q 044999          176 LICLGGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRARRLLVELGVIPGLVELFHIGDWTTKLVAGNTLGVVAAHVEYI  255 (461)
Q Consensus       176 ~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~  255 (461)
                         ...++.++..+.++++.+|..++.+|+.+..          ...++.|+.++.++++.++..++.+|+.+..     
T Consensus        75 ---~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----  136 (201)
T 3ltj_A           75 ---ERAVEPLIKALKDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD-----  136 (201)
T ss_dssp             ---GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC-----
T ss_pred             ---HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-----
Confidence               2568889999999999999999999999843          3478889999999999999999999999853     


Q ss_pred             hhhhhcCCHHHHHHHhCCCChhHHHHHHHHHHHhccCcccHHHHHHHHHHHhccCCHHHHHHHHHHHHHhh
Q 044999          256 TPVAEAGAIPLYAELLQGPDSTGKEISEDVFCILAVSEANANAIAEHLVRILREGDNEANAAAADVLWDLA  326 (461)
Q Consensus       256 ~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~l~~ll~~~~~~~~~~a~~~L~~l~  326 (461)
                           ...++.|..++.++++.++..++.+|..+..     ....+.|..++.++++.++..|..+|..+.
T Consensus       137 -----~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~-----~~~~~~L~~~l~d~~~~vr~~A~~aL~~l~  197 (201)
T 3ltj_A          137 -----ERAVEPLIKALKDEDGWVRQSAADALGEIGG-----ERVRAAMEKLAETGTGFARKVAVNYLETHK  197 (201)
T ss_dssp             -----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-----HHHHHHHHHHHHHCCHHHHHHHHHHHHHCC
T ss_pred             -----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----hhHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence                 3468999999999999999999999999842     334478888889999999999999999874

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A

Probab=99.44  E-value=1.6e-10  Score=114.95  Aligned_cols=361  Identities=17%  Similarity=0.139  Sum_probs=251.1

Q ss_pred             hHHHHHHHhhcCCHHHHHHHHHHHHhhcCCCchhHHHh-hHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHhcCCchh
Q 044999           11 AFNRFEQAVVSGSEALQVKALTKLARVSKFAPQDILAA-TIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQADGAL   89 (461)
Q Consensus        11 ~~~~l~~ll~~~~~~~~~~a~~~l~~la~~~~~~~l~~-~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~   89 (461)
                      ....+.+-+.+.++.+|-.|+++++++..+    .+.+ .++.+.+.+.+    .+.++-+++.|+.++.++... +++.
T Consensus       112 ~iN~l~kDl~~~n~~ir~lALr~L~~i~~~----e~~~~l~~~v~~~l~~----~d~~~~VRK~A~~al~kl~~~-~p~~  182 (621)
T 2vgl_A          112 INNAIKNDLASRNPTFMGLALHCIANVGSR----EMAEAFAGEIPKILVA----GDTMDSVKQSAALCLLRLYRT-SPDL  182 (621)
T ss_dssp             HHHHHHHHHHSCCHHHHHHHHHHHHHHCCH----HHHHHHTTHHHHHHHC----SSSCHHHHHHHHHHHHHHHHH-CGGG
T ss_pred             HHHHHHHhcCCCCHHHHHHHHHHhhccCCH----HHHHHHHHHHHHHHhC----CCCCHHHHHHHHHHHHHHHHh-Chhh
Confidence            346777888899999999999999999832    2444 88889999843    335788888899999999985 3322


Q ss_pred             HHHHHhcCCHHHHHhcCCCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHH----HHhcCC-------------C
Q 044999           90 ATEIGQSGVINSVLRLFPQSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVI----DLLNSC-------------N  152 (461)
Q Consensus        90 ~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~----~ll~~~-------------~  152 (461)
                         +...+.++.+.++|.+.++.++..+...+..++..++..   +  ...++.++    +++...             +
T Consensus       183 ---~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~---~--~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~  254 (621)
T 2vgl_A          183 ---VPMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPEE---F--KTSVSLAVSRLSRIVTSASTDLQDYTYYFVPA  254 (621)
T ss_dssp             ---CCCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHHH---H--TTHHHHHHHHHHHHHHCCSSSCSTTEETTEES
T ss_pred             ---cCchhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhChHH---H--HHHHHHHHHHHHHHHhCCCCCccchhhcCCCC
Confidence               222478999999999999999999998888888766432   1  12233333    443221             5


Q ss_pred             hHHHHHHHHHHHHhhC--ChHHHHHHHhcCCHHHHHHHHc---------CCCH--HHHHHHHHHHHHhhcCchhHHHHHh
Q 044999          153 DGTRRYLLEILSALAL--LREVRRVLICLGGLRYLVEAVS---------FGSM--VSRERACQAIGLLAVTGRARRLLVE  219 (461)
Q Consensus       153 ~~~~~~a~~~L~~l~~--~~~~~~~~~~~~~l~~l~~~l~---------~~~~--~~~~~a~~~L~~l~~~~~~~~~~~~  219 (461)
                      +-.+...++.+..++.  +++.+..+.+  .+..++..+.         +.+.  .+...+..++..+...++...    
T Consensus       255 ~w~qi~il~ll~~~~~~~d~~~~~~l~~--~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~~~~~~~~----  328 (621)
T 2vgl_A          255 PWLSVKLLRLLQCYPPPEDPAVRGRLTE--CLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHDSEPNLLV----  328 (621)
T ss_dssp             HHHHHHHHHHGGGSSSCSSHHHHHHHHH--HHHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHCCCHHHHH----
T ss_pred             chHHHHHHHHHHHhCCCCCHHHHHHHHH--HHHHHHHhhccCcccccccccchHHHHHHHHHHHHHhcCCcHHHHH----
Confidence            7888899999998884  3455554444  3444443321         2233  788889999998864332222    


Q ss_pred             cCChHHHHHhcccCCHHHHHHHHHHHHHHhcCccchhhhhhcCCHHHHHHHhC-CCChhHHHHHHHHHHHhccCcccHHH
Q 044999          220 LGVIPGLVELFHIGDWTTKLVAGNTLGVVAAHVEYITPVAEAGAIPLYAELLQ-GPDSTGKEISEDVFCILAVSEANANA  298 (461)
Q Consensus       220 ~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~~~~~~  298 (461)
                       .++..|..++.+.++.++..++..|..++...+....+  ....+.++..++ +++..++..++.+|..++. +.+...
T Consensus       329 -~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~~~~~--~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~-~~Nv~~  404 (621)
T 2vgl_A          329 -RACNQLGQFLQHRETNLRYLALESMCTLASSEFSHEAV--KTHIETVINALKTERDVSVRQRAVDLLYAMCD-RSNAQQ  404 (621)
T ss_dssp             -HHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTTHHHH--HTTHHHHHHHHTTCCCHHHHHHHHHHHHHHCC-HHHHHH
T ss_pred             -HHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCcHHHH--HHHHHHHHHHhccCCCHhHHHHHHHHHHHHcC-hhhHHH
Confidence             25677888888899999999999999998763222222  234677888888 8899999999999999974 346677


Q ss_pred             HHHHHHHHhccCCHHHHHHHHHHHHHhhC-CCCchhHHhhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcC-ChhhHHHH
Q 044999          299 IAEHLVRILREGDNEANAAAADVLWDLAG-YKHSVPVIRNSGAIPILVNLLRGENDEVREKVSGAIAQLSY-NEADRVAL  376 (461)
Q Consensus       299 i~~~l~~ll~~~~~~~~~~a~~~L~~l~~-~~~~~~~l~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~-~~~~~~~~  376 (461)
                      ++..+...+...+.+.+..++..++.++. .+.....     .+..|++++......+...+...+..+.. .++.+...
T Consensus       405 Iv~eL~~yl~~~d~~~~~~~v~~I~~la~k~~~~~~~-----~v~~Ll~ll~~~~~~v~~ev~~~l~~ii~~~~~~~~~~  479 (621)
T 2vgl_A          405 IVAEMLSYLETADYSIREEIVLKVAILAEKYAVDYTW-----YVDTILNLIRIAGDYVSEEVWYRVIQIVINRDDVQGYA  479 (621)
T ss_dssp             HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCSSTHH-----HHHHHHHHHHHHGGGSCSHHHHHHHHHHGGGCSCHHHH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHH-----HHHHHHHHHHhhcccchHHHHHHHHHHHhCChhHHHHH
Confidence            77888888888899999999999999983 3433333     34567777775544455556666666655 55555544


Q ss_pred             HhCCChHHHHHhccCC--CHHHHHHHHHHHHHhc
Q 044999          377 ADAGAVPIMIELLHDE--SEELRDNAAESLINFS  408 (461)
Q Consensus       377 ~~~~~i~~L~~ll~~~--~~~~~~~a~~~L~~l~  408 (461)
                           +..|.+.+.+.  ...+...++|++...+
T Consensus       480 -----~~~l~~~l~~~~~~~~li~~~~wilGEy~  508 (621)
T 2vgl_A          480 -----AKTVFEALQAPACHENLVKVGGYILGEFG  508 (621)
T ss_dssp             -----HHHHHHHHTSSSCCHHHHHHHHHHHHHHT
T ss_pred             -----HHHHHHHHcCccchHHHHHHHHHHhcchH
Confidence                 34566666442  3455566667777664

>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9

Probab=99.00  E-value=4.2e-07  Score=84.38  Aligned_cols=310  Identities=14%  Similarity=0.106  Sum_probs=199.4

Q ss_pred             hHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHhcCCc---hhHHHHHhcCCH-HHHHh-cCCCCCHHHHHHHHHHHHH
Q 044999           49 TIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQADG---ALATEIGQSGVI-NSVLR-LFPQSDDSFRTVLVKCLRV  123 (461)
Q Consensus        49 ~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~---~~~~~~~~~~~l-~~L~~-ll~~~~~~~~~~~~~~l~~  123 (461)
                      ....++++|+.    . ...+..+.....+..+... ++   .....+.+.... ..+.. .+..+++-....+..++..
T Consensus        78 ~~~~~l~lL~~----~-~~~d~vqYvL~Li~DlL~~-~~~~~~~~~~f~~~~~~~~~l~~~~~~~dd~~~ll~a~~l~~l  151 (480)
T 1ho8_A           78 TLIPLIHLLST----S-DNEDCKKSVQNLIAELLSS-DKYGDDTVKFFQEDPKQLEQLFDVSLKGDFQTVLISGFNVVSL  151 (480)
T ss_dssp             THHHHHHHHHS----C-CCHHHHHHHHHHHHHHHHC-SSSSHHHHHHHHHCTTHHHHHHHHCSCSSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhh----c-ChHHHHHHHHHHHHHHHhc-CcchHHHHHHHhhCcccchHHHHHHhcccchHHHHHHHHHHHH
Confidence            67889999985    3 3456777777888888875 43   333343443332 22333 3333444444444444444


Q ss_pred             HhccChhhHHHHHHcCCHH--HHHHHhcCC-ChHHHHHHHHHHHHhhCChHHHHHHHhcC--CHHHHHHHHcC-------
Q 044999          124 FVTFGNENRVIVARNGGLE--IVIDLLNSC-NDGTRRYLLEILSALALLREVRRVLICLG--GLRYLVEAVSF-------  191 (461)
Q Consensus       124 l~~~~~~~~~~~~~~g~i~--~L~~ll~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~--~l~~l~~~l~~-------  191 (461)
                      ++............  .+.  .++..+.+. +.+.+..++.+|..+...++.|..+.+.+  .++.++.++..       
T Consensus       152 l~~~~~~~~~~l~~--l~~~~~~~~~L~~~~~~~~~~i~v~~L~~Ll~~~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~  229 (480)
T 1ho8_A          152 LVQNGLHNVKLVEK--LLKNNNLINILQNIEQMDTCYVCIRLLQELAVIPEYRDVIWLHEKKFMPTLFKILQRATDSQLA  229 (480)
T ss_dssp             HTSTTTCCHHHHHH--HHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHTSHHHHHHHHTTHHHHHHHHHHHHHHHHC----
T ss_pred             HhccCCccHhHHHH--HhhhHHHHHHhccccCCchHHHHHHHHHHHhcchhHHHHHHHcccchhHHHHHHHHHhhccccc
Confidence            44322221111111  122  355555553 44567789999999999999999998754  36666554431       


Q ss_pred             --------C--CHHHHHHHHHHHHHhhcCchhHHHHHhcCCh--HHHHHhcc-cCCHHHHHHHHHHHHHHhcCc-cchhh
Q 044999          192 --------G--SMVSRERACQAIGLLAVTGRARRLLVELGVI--PGLVELFH-IGDWTTKLVAGNTLGVVAAHV-EYITP  257 (461)
Q Consensus       192 --------~--~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i--~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~-~~~~~  257 (461)
                              +  ...+++.++-+++-++..++....+...+..  +.|+.+++ +..+++.+.++.+|.|+.... +....
T Consensus       230 ~~~~~~~~~~~~~Ql~Y~~ll~iWlLSF~~~~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~  309 (480)
T 1ho8_A          230 TRIVATNSNHLGIQLQYHSLLLIWLLTFNPVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKK  309 (480)
T ss_dssp             ---------CCHHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHH
T ss_pred             cccccccCCCccHHHHHHHHHHHHHHHcCHHHHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhh
Confidence                    1  2467899999999999999887777766543  56677777 557889999999999998763 22222


Q ss_pred             -----hhhcCCHHHHHHHhCCC---ChhHHHHHHH-------HHHHhccCcccHHHHH----------------------
Q 044999          258 -----VAEAGAIPLYAELLQGP---DSTGKEISED-------VFCILAVSEANANAIA----------------------  300 (461)
Q Consensus       258 -----~~~~g~i~~L~~ll~~~---~~~~~~~a~~-------~L~~l~~~~~~~~~i~----------------------  300 (461)
                           ++..++ +.++..|...   |+++.+-.-.       ....++..++...++.                      
T Consensus       310 ~~~~~~~~~~~-l~~l~~L~~rk~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~k  388 (480)
T 1ho8_A          310 VIKQLLLLGNA-LPTVQSLSERKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDE  388 (480)
T ss_dssp             HHHHHHHHHCH-HHHHHHHHSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGG
T ss_pred             HHHHHHHHccc-hHHHHHHhhCCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHH
Confidence                 222344 4455555433   6665443222       1222233333333322                      


Q ss_pred             ---------HHHHHHhcc----------CCHHHHHHHHHHHHHhhC-CCCchhHHhhcCCHHHHHHhhcCCCHHHHHHHH
Q 044999          301 ---------EHLVRILRE----------GDNEANAAAADVLWDLAG-YKHSVPVIRNSGAIPILVNLLRGENDEVREKVS  360 (461)
Q Consensus       301 ---------~~l~~ll~~----------~~~~~~~~a~~~L~~l~~-~~~~~~~l~~~g~i~~L~~ll~~~~~~v~~~a~  360 (461)
                               ..|+++|.+          .++.+..-||.=|+.++. +|..+..+-+.|+=+.+++++.+++++|+..|+
T Consensus       389 f~e~~~~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL  468 (480)
T 1ho8_A          389 FKKDNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEAL  468 (480)
T ss_dssp             GSSGGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHH
T ss_pred             HHhcchHHHHHHHHHHhhhccccccccCCCcceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHH
Confidence                     788888863          368888999999999995 688888888999999999999999999999999


Q ss_pred             HHHHHhc
Q 044999          361 GAIAQLS  367 (461)
Q Consensus       361 ~~L~~l~  367 (461)
                      .|+..+.
T Consensus       469 ~avQklm  475 (480)
T 1ho8_A          469 KATQAII  475 (480)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9887764

>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A

Probab=98.96  E-value=1.6e-08  Score=101.89  Aligned_cols=216  Identities=15%  Similarity=0.049  Sum_probs=158.9

Q ss_pred             hHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHH-HhcCCCCCHHHHHHHHHHHHHHhcc
Q 044999           49 TIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQADGALATEIGQSGVINSV-LRLFPQSDDSFRTVLVKCLRVFVTF  127 (461)
Q Consensus        49 ~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L-~~ll~~~~~~~~~~~~~~l~~l~~~  127 (461)
                      .|.++++.|++      .++..+..|+.+|.+|+.  +...+..+...|++..+ ..+|.+++.+|+..++.+|.+|+.+
T Consensus        35 ~i~Pll~~L~S------~~~~~r~~A~~al~~l~~--~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~  106 (684)
T 4gmo_A           35 KILPVLKDLKS------PDAKSRTTAAGAIANIVQ--DAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQE  106 (684)
T ss_dssp             TTHHHHHHHSS------SCCSHHHHHHHHHHHHTT--SHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHcCC------CCHHHHHHHHHHHHHHHc--CcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence            66677788886      344578889999999998  78888888888888765 5678999999999999999999974


Q ss_pred             -ChhhHHHHHHcCCHHHHHHHhcCCC---------------------hHHHHHHHHHHHHhh-CChHHHHHHHhcCCHHH
Q 044999          128 -GNENRVIVARNGGLEIVIDLLNSCN---------------------DGTRRYLLEILSALA-LLREVRRVLICLGGLRY  184 (461)
Q Consensus       128 -~~~~~~~~~~~g~i~~L~~ll~~~~---------------------~~~~~~a~~~L~~l~-~~~~~~~~~~~~~~l~~  184 (461)
                       .++.+..+...|+++.|..+++...                     ..+...++.+|++++ .+.+....+...++++.
T Consensus       107 ~g~d~~~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~  186 (684)
T 4gmo_A          107 EEADFCVHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILR  186 (684)
T ss_dssp             SCHHHHHHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHH
T ss_pred             cCchHHHHHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHH
Confidence             5788899999999999998875311                     134456788999999 66777778888899999


Q ss_pred             HHHHHcCC---CHHHHHHHHHHHHHhhcCchh-HHHHHhcCChHHHHHhc--ccCCHHHHHHHHHHHHHHhcC------c
Q 044999          185 LVEAVSFG---SMVSRERACQAIGLLAVTGRA-RRLLVELGVIPGLVELF--HIGDWTTKLVAGNTLGVVAAH------V  252 (461)
Q Consensus       185 l~~~l~~~---~~~~~~~a~~~L~~l~~~~~~-~~~~~~~~~i~~L~~ll--~~~~~~~~~~a~~~L~~l~~~------~  252 (461)
                      ++.+|.+.   ..+++..++.+|..++...+. ...+.+.+....+..++  ...+...+..+++.|.|+...      .
T Consensus       187 l~~~L~~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~~~~~~~~~la~giL~Ni~~~~~~~d~s  266 (684)
T 4gmo_A          187 LLFRLISADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLATGTDPRAVMACGVLHNVFTSLQWMDHS  266 (684)
T ss_dssp             HHHHHHHHCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHHHSSCTTHHHHHHHHHHHHHHHTCBTTB
T ss_pred             HHHHHHhcCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHhcCCcHHHHHHHHHHHhHhhhhhhhhcc
Confidence            99988543   468999999999999998877 66777765433322222  233334566788899987532      2


Q ss_pred             cchhhhhhcCCHHHHHHHhC
Q 044999          253 EYITPVAEAGAIPLYAELLQ  272 (461)
Q Consensus       253 ~~~~~~~~~g~i~~L~~ll~  272 (461)
                      ...........++.+...+.
T Consensus       267 ~~~~~~~~~~li~~l~~~l~  286 (684)
T 4gmo_A          267 PGKDGACDAILIPTLTRALE  286 (684)
T ss_dssp             CCGGGCSGGGTHHHHHHHHT
T ss_pred             hhhHHHHHHHHHHhhhhhHh
Confidence            23333334445566555543

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=98.96  E-value=4.3e-06  Score=84.63  Aligned_cols=308  Identities=12%  Similarity=0.036  Sum_probs=199.6

Q ss_pred             CHHHHHhcCC---CCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhcCCC--------hHHHHHHHHHHHHh
Q 044999           98 VINSVLRLFP---QSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLNSCN--------DGTRRYLLEILSAL  166 (461)
Q Consensus        98 ~l~~L~~ll~---~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~--------~~~~~~a~~~L~~l  166 (461)
                      ++..|.+.|.   ++++.++..++..+..+......  .      ++..|...+.+.+        +.++..|+-.|+-.
T Consensus       393 gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~--~------~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla  464 (963)
T 4ady_A          393 GKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGR--D------TTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLA  464 (963)
T ss_dssp             HHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTH--H------HHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcH--H------HHHHHHHHHcCccccccccccHHHHHHHHHHHHHH
Confidence            4677777777   56777788888777765543321  1      3566777776554        67888888888876


Q ss_pred             hCChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhc-ccCCHHHHHHHHHHH
Q 044999          167 ALLREVRRVLICLGGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRARRLLVELGVIPGLVELF-HIGDWTTKLVAGNTL  245 (461)
Q Consensus       167 ~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll-~~~~~~~~~~a~~~L  245 (461)
                      .......      .+++.|...+.+++..++..|+.+|+.+-....+..      ++..|+..+ .+.+..+++.++.+|
T Consensus       465 ~~GS~~e------ev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~------ai~~LL~~~~e~~~e~vrR~aalgL  532 (963)
T 4ady_A          465 AMGSANI------EVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPE------AIHDMFTYSQETQHGNITRGLAVGL  532 (963)
T ss_dssp             STTCCCH------HHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHH------HHHHHHHHHHHCSCHHHHHHHHHHH
T ss_pred             hcCCCCH------HHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHH------HHHHHHHHHhccCcHHHHHHHHHHH
Confidence            5221111      135667888887777778888888887643333322      244555543 356778999999999


Q ss_pred             HHHhcCccchhhhhhcCCHHHHHHHhC-CCChhHHHHHHHHHHHhccCcccHHHHHHHHHHH-hccCCHHHHHHHHHHHH
Q 044999          246 GVVAAHVEYITPVAEAGAIPLYAELLQ-GPDSTGKEISEDVFCILAVSEANANAIAEHLVRI-LREGDNEANAAAADVLW  323 (461)
Q Consensus       246 ~~l~~~~~~~~~~~~~g~i~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~l~~l-l~~~~~~~~~~a~~~L~  323 (461)
                      +.+....        ...++.+++.|. +.++.+|..++.++..-.....+...+ +.|++. ..+.++.+|..|+.+|+
T Consensus       533 Gll~~g~--------~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~aI-q~LL~~~~~d~~d~VRraAViaLG  603 (963)
T 4ady_A          533 ALINYGR--------QELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSAV-KRLLHVAVSDSNDDVRRAAVIALG  603 (963)
T ss_dssp             HHHTTTC--------GGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHHH-HHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred             HhhhCCC--------hHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHHH-HHHHHHhccCCcHHHHHHHHHHHH
Confidence            9886542        223567777765 568888888887776554444443333 444444 45668899999999999


Q ss_pred             HhhCCCCchhHHhhcCCHHHHHHh-hcCCCHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhccCCCHHHHHHHHH
Q 044999          324 DLAGYKHSVPVIRNSGAIPILVNL-LRGENDEVREKVSGAIAQLSYNEADRVALADAGAVPIMIELLHDESEELRDNAAE  402 (461)
Q Consensus       324 ~l~~~~~~~~~l~~~g~i~~L~~l-l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~  402 (461)
                      .+....+        ..++.++.. .++.++.+|..+..+|+.++......      .++..|..+.++.++.+++.|+.
T Consensus       604 lI~~g~~--------e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~------~aid~L~~L~~D~d~~Vrq~Ai~  669 (963)
T 4ady_A          604 FVLLRDY--------TTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQ------SAIDVLDPLTKDPVDFVRQAAMI  669 (963)
T ss_dssp             HHTSSSC--------SSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCH------HHHHHHHHHHTCSSHHHHHHHHH
T ss_pred             hhccCCH--------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcH------HHHHHHHHHccCCCHHHHHHHHH
Confidence            9875432        345566664 45789999999999999998732221      13677888889999999999999


Q ss_pred             HHHHhcCCCcchHHHHHhhCCchHHhHHHHHHHhh-hc-hhHHHHHHHHHhHhhh
Q 044999          403 SLINFSEDPLQHERISEAIGIPSFQSMQSRLTRIR-AS-DDLMARSMRRMSIEQL  455 (461)
Q Consensus       403 ~L~~l~~~~~~~~~l~~~~~~~~~~~l~~~l~~~~-~~-~~~~~~~~~~~~~~~~  455 (461)
                      +|..+.....+.       ..+.+..+...+.+.- +. .+.+.++.++.+...+
T Consensus       670 ALG~Ig~gtnna-------~~~rva~~l~~L~~~~~dk~~d~~~~fga~iAqGll  717 (963)
T 4ady_A          670 ALSMILIQQTEK-------LNPQVADINKNFLSVITNKHQEGLAKFGACVAQGIM  717 (963)
T ss_dssp             HHHHHSTTCCTT-------TCTTHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHH
T ss_pred             HHHHHhcCCccc-------cchHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHH
Confidence            999996443222       0011111222221111 11 2678899888887765

>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}

Probab=98.96  E-value=9.4e-08  Score=78.85  Aligned_cols=219  Identities=14%  Similarity=0.120  Sum_probs=159.3

Q ss_pred             CCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCchh-HHHHHhcCChHHHHHhcccCCHHHHHHHHHHHHHHhcC-ccchhh
Q 044999          180 GGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRA-RRLLVELGVIPGLVELFHIGDWTTKLVAGNTLGVVAAH-VEYITP  257 (461)
Q Consensus       180 ~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~-~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~-~~~~~~  257 (461)
                      +.+..+..++.+.|+.++..++.+|..+....+. .....-...++.++.++++.+..+...|..+|..+-.+ +-..+.
T Consensus        33 ~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~~  112 (265)
T 3b2a_A           33 RALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSKT  112 (265)
T ss_dssp             HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHHH
T ss_pred             hHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHHH
Confidence            4688899999999999999999999999877544 22223345889999999999999999999999999887 444444


Q ss_pred             hhhcCCHHHHHHHhCCCChhHHHHHHHHHHHhccCcccHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCchhHHhh
Q 044999          258 VAEAGAIPLYAELLQGPDSTGKEISEDVFCILAVSEANANAIAEHLVRILREGDNEANAAAADVLWDLAGYKHSVPVIRN  337 (461)
Q Consensus       258 ~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~l~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~  337 (461)
                      +..  .+.++.++++++++-++..++..+..+.... ....+...+..++.|.+++++..++.++.+++...+....+  
T Consensus       113 y~K--l~~aL~dlik~~~~il~~eaae~Lgklkv~~-~~~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~D~~i~--  187 (265)
T 3b2a_A          113 FLK--AAKTLVSLLESPDDMMRIETIDVLSKLQPLE-DSKLVRTYINELVVSPDLYTKVAGFCLFLNMLNSSADSGHL--  187 (265)
T ss_dssp             HHH--HHHHHHHHTTSCCHHHHHHHHHHHHHCCBSC-CCHHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCSSCCCG--
T ss_pred             HHH--HHHHHHHHhcCCCchHHHHHHHHhCcCCccc-chHHHHHHHHHHHhCCChhHHHHHHHHHHHhhcccCCHHHH--
Confidence            432  3588999999999999999999999993322 23445588888899999999999999999999643322211  


Q ss_pred             cCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHH-hc-cCCCHHHHHHHHHH
Q 044999          338 SGAIPILVNLLRGENDEVREKVSGAIAQLSYNEADRVALADAGAVPIMIE-LL-HDESEELRDNAAES  403 (461)
Q Consensus       338 ~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~-ll-~~~~~~~~~~a~~~  403 (461)
                      .+++..+-.++++.++.+++.|+.++..+...|-..+.+-+--.+...+. +. ..+.|.++..|-..
T Consensus       188 ~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~pi~~~~~~~~~~~~~~v~~l~~~~~~~~~~~ka~~v  255 (265)
T 3b2a_A          188 TLILDEIPSLLQNDNEFIVELALDVLEKALSFPLLENVKIELLKISRIVDGLVYREGAPIIRLKAKKV  255 (265)
T ss_dssp             GGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSCCCSCCHHHHHHHHHHHHHGGGCSSCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCcccHhHHHHHHHHHHHHHHHHHhcCChhHHHHHHHH
Confidence            13455588899999999999999999999885432111111111222222 22 34677777666543

>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}

Probab=98.92  E-value=3.7e-08  Score=89.46  Aligned_cols=279  Identities=10%  Similarity=0.038  Sum_probs=160.0

Q ss_pred             HHhHHHHHHHhhcCCHHHHHHHHHHHHhhcCCCchhHHHhhHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHhcCCch
Q 044999            9 EEAFNRFEQAVVSGSEALQVKALTKLARVSKFAPQDILAATIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQADGA   88 (461)
Q Consensus         9 ~~~~~~l~~ll~~~~~~~~~~a~~~l~~la~~~~~~~l~~~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~   88 (461)
                      ...|...++++.+.|...|+..-..+..++.. ..+.+ =++..+.+-+++      +++-++-.|.++|+++..  ++-
T Consensus        67 t~lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~-~~e~i-Lv~Nsl~kDl~~------~N~~iR~lALRtL~~I~~--~~m  136 (355)
T 3tjz_B           67 TEAFFAMTKLFQSNDPTLRRMCYLTIKEMSCI-AEDVI-IVTSSLTKDMTG------KEDSYRGPAVRALCQITD--STM  136 (355)
T ss_dssp             HHHHHHHHGGGGCCCHHHHHHHHHHHHHHTTT-SSCGG-GGHHHHHHHHHS------SCHHHHHHHHHHHHHHCC--TTT
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCC-HHHHH-HHHHHHHhhcCC------CcHhHHHHHHHHHhcCCC--HHH
Confidence            34566677888888988888888888877722 11121 377888888886      344455559999999997  332


Q ss_pred             hHHHHHhcCCHHHHHhcCCCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHhhC
Q 044999           89 LATEIGQSGVINSVLRLFPQSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLNSCNDGTRRYLLEILSALAL  168 (461)
Q Consensus        89 ~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~  168 (461)
                      .. .     ..+.+.+.+.+.++.|++.|+.+...+...+++..    + +.++.+-+++.+.++.++..|+.++..+..
T Consensus       137 ~~-~-----l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe~v----~-~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~  205 (355)
T 3tjz_B          137 LQ-A-----IERYMKQAIVDKVPSVSSSALVSSLHLLKCSFDVV----K-RWVNEAQEAASSDNIMVQYHALGLLYHVRK  205 (355)
T ss_dssp             HH-H-----HHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHHHH----H-TTHHHHHHHTTCSSHHHHHHHHHHHHHHHT
T ss_pred             HH-H-----HHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHHHH----H-HHHHHHHHHhcCCCccHHHHHHHHHHHHHh
Confidence            22 2     34668889999999999999999999998776543    2 588899999999999999999999999985


Q ss_pred             ChHHHHHHHhcCCHHHHHHHHcCC---CHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhcccCCHHHHHHHHHHH
Q 044999          169 LREVRRVLICLGGLRYLVEAVSFG---SMVSRERACQAIGLLAVTGRARRLLVELGVIPGLVELFHIGDWTTKLVAGNTL  245 (461)
Q Consensus       169 ~~~~~~~~~~~~~l~~l~~~l~~~---~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L  245 (461)
                      ++..        .+..++..+...   ++-.+...++.+..+...++..   .....++.+...+++.++.+...|+.++
T Consensus       206 ~d~~--------a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~---~~~~~~~~l~~~L~~~~~aVvyEa~k~I  274 (355)
T 3tjz_B          206 NDRL--------AVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDGS---RDSPLFDFIESCLRNKHEMVVYEAASAI  274 (355)
T ss_dssp             TCHH--------HHHHHHHHHHSSCCSCHHHHHHHHHHHTCC--------------------CCCCCSSHHHHHHHHHHH
T ss_pred             hchH--------HHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccchh---hHHHHHHHHHHHHcCCChHHHHHHHHHH
Confidence            4321        233444444442   5666666666665555443111   1234677888888999999999999999


Q ss_pred             HHHhcCccchhhhhhcCCHHHHHHHhCCCChhHHHHHHHHHHHhccCccc-HHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 044999          246 GVVAAHVEYITPVAEAGAIPLYAELLQGPDSTGKEISEDVFCILAVSEAN-ANAIAEHLVRILREGDNEANAAAADVLW  323 (461)
Q Consensus       246 ~~l~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~-~~~i~~~l~~ll~~~~~~~~~~a~~~L~  323 (461)
                      ..+...+..   .. ..++..+..++.+.++.+|..|+..|..++...+. -......+.+++++++..+...|+..|.
T Consensus       275 ~~l~~~~~~---~~-~~a~~~L~~fLss~d~niryvaLr~L~~l~~~~P~~v~~~n~~ie~li~d~n~sI~t~Aittll  349 (355)
T 3tjz_B          275 VNLPGCSAK---EL-APAVSVLQLFCSSPKAALRYAAVRTLNKVAMKHPSAVTACNLDLENLVTDANRSIATLAITTLL  349 (355)
T ss_dssp             TC---------------CCCTHHHHHHSSSSSSHHHHHHCC--------------------------------------
T ss_pred             HhccCCCHH---HH-HHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHccCCcHhHHHHHHHHhh
Confidence            888653211   11 23356677778889999999999988888654332 2223377778888888777777766554

>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A

Probab=98.90  E-value=1.1e-08  Score=103.30  Aligned_cols=193  Identities=12%  Similarity=0.056  Sum_probs=145.2

Q ss_pred             HHhHHHHHHHhhcCCHHHHHHHHHHHHhhc-CCCchhHHHh--hHHHHHH-hhccCCCCCCCcHHHHHHHHHHHHHHHhc
Q 044999            9 EEAFNRFEQAVVSGSEALQVKALTKLARVS-KFAPQDILAA--TIPILAR-LLGENNFSGNLTRSIQQAAAYCLKQIASQ   84 (461)
Q Consensus         9 ~~~~~~l~~ll~~~~~~~~~~a~~~l~~la-~~~~~~~l~~--~i~~l~~-~l~~~~~~~~~~~~~~~~a~~~L~~l~~~   84 (461)
                      ++.+.++++.++|.++..|..|+.+|++|+ ++..+..+.+  ++..++. +|..      ++.+++..|+.+|.+|+.+
T Consensus        33 ~~~i~Pll~~L~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D------~~~~Vr~~A~gaLrnL~~~  106 (684)
T 4gmo_A           33 EDKILPVLKDLKSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTD------NNIDSRAAGWEILKVLAQE  106 (684)
T ss_dssp             HHTTHHHHHHHSSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTC------SCHHHHHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHcCCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCC------CCHHHHHHHHHHHHHHHhh
Confidence            345567888899999999999999999999 7666666555  7777655 4543      4677888899999999986


Q ss_pred             CCchhHHHHHhcCCHHHHHhcCCCCC---------------------HHHHHHHHHHHHHHhccChhhHHHHHHcCCHHH
Q 044999           85 ADGALATEIGQSGVINSVLRLFPQSD---------------------DSFRTVLVKCLRVFVTFGNENRVIVARNGGLEI  143 (461)
Q Consensus        85 ~~~~~~~~~~~~~~l~~L~~ll~~~~---------------------~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~  143 (461)
                      +.++.+..+...|+++.|..+++...                     .++...+...+..++..+.+....+...++++.
T Consensus       107 ~g~d~~~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~  186 (684)
T 4gmo_A          107 EEADFCVHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILR  186 (684)
T ss_dssp             SCHHHHHHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHH
T ss_pred             cCchHHHHHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHH
Confidence            56788899999999999988775311                     122345666777899888888888999999999


Q ss_pred             HHHHhcCC---ChHHHHHHHHHHHHhh-CChHHHHHHHhcCC---HHHHHHHHcCCCHHHHHHHHHHHHHhh
Q 044999          144 VIDLLNSC---NDGTRRYLLEILSALA-LLREVRRVLICLGG---LRYLVEAVSFGSMVSRERACQAIGLLA  208 (461)
Q Consensus       144 L~~ll~~~---~~~~~~~a~~~L~~l~-~~~~~~~~~~~~~~---l~~l~~~l~~~~~~~~~~a~~~L~~l~  208 (461)
                      |+..|.+.   ..+++..|+.+|..++ .+++....+.+.+.   +..+..+..+ +...+..+++++.|+.
T Consensus       187 l~~~L~~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~~~-~~~~~~la~giL~Ni~  257 (684)
T 4gmo_A          187 LLFRLISADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLATG-TDPRAVMACGVLHNVF  257 (684)
T ss_dssp             HHHHHHHHCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHHHS-SCTTHHHHHHHHHHHH
T ss_pred             HHHHHHhcCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHhcC-CcHHHHHHHHHHHhHh
Confidence            99987543   3589999999999999 56677777777653   3333333333 3345677888888874

>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}

Probab=98.88  E-value=1.8e-07  Score=77.19  Aligned_cols=181  Identities=17%  Similarity=0.170  Sum_probs=147.9

Q ss_pred             CHHHHHHHhcCCChHHHHHHHHHHHHhhCC--hHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCchh-HHH
Q 044999          140 GLEIVIDLLNSCNDGTRRYLLEILSALALL--REVRRVLICLGGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRA-RRL  216 (461)
Q Consensus       140 ~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~--~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~-~~~  216 (461)
                      .+..+..++...|+.++..++.+|..+...  ...+...++ ..++.++.++.+.|+.+.-.|++++..+-.+.+- ...
T Consensus        34 ~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e-~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~~  112 (265)
T 3b2a_A           34 ALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLE-RHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSKT  112 (265)
T ss_dssp             HHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHH-HHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHHH
T ss_pred             HHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHH-HHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHHH
Confidence            577899999999999999999999999833  444444444 3799999999999999999999999999887765 554


Q ss_pred             HHhcCChHHHHHhcccCCHHHHHHHHHHHHHHhcCccchhhhhhcCCHHHHHHHhCCCChhHHHHHHHHHHHhccCc---
Q 044999          217 LVELGVIPGLVELFHIGDWTTKLVAGNTLGVVAAHVEYITPVAEAGAIPLYAELLQGPDSTGKEISEDVFCILAVSE---  293 (461)
Q Consensus       217 ~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~---  293 (461)
                      +..  ....+..++.++++-.+..++..++.+......+      +++..+.+++.+.+.+++..+..+|.+++...   
T Consensus       113 y~K--l~~aL~dlik~~~~il~~eaae~Lgklkv~~~~~------~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~D~  184 (265)
T 3b2a_A          113 FLK--AAKTLVSLLESPDDMMRIETIDVLSKLQPLEDSK------LVRTYINELVVSPDLYTKVAGFCLFLNMLNSSADS  184 (265)
T ss_dssp             HHH--HHHHHHHHTTSCCHHHHHHHHHHHHHCCBSCCCH------HHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCSSC
T ss_pred             HHH--HHHHHHHHhcCCCchHHHHHHHHhCcCCcccchH------HHHHHHHHHHhCCChhHHHHHHHHHHHhhcccCCH
Confidence            444  5788899999999999999999999993323232      23688999999999999999999999996533   


Q ss_pred             ccHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhCCC
Q 044999          294 ANANAIAEHLVRILREGDNEANAAAADVLWDLAGYK  329 (461)
Q Consensus       294 ~~~~~i~~~l~~ll~~~~~~~~~~a~~~L~~l~~~~  329 (461)
                      +.-..+...+-.++++.++.+++.|+.++-.+...|
T Consensus       185 ~i~~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~p  220 (265)
T 3b2a_A          185 GHLTLILDEIPSLLQNDNEFIVELALDVLEKALSFP  220 (265)
T ss_dssp             CCGGGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSC
T ss_pred             HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCc
Confidence            334445577888999999999999999999998764

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}

Probab=98.87  E-value=2.8e-06  Score=67.16  Aligned_cols=213  Identities=17%  Similarity=0.159  Sum_probs=163.3

Q ss_pred             HhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCchh-HHHHHhcCChHHHHHhcc-cCCHHHHHHHHHHHHHHhcC-cc
Q 044999          177 ICLGGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRA-RRLLVELGVIPGLVELFH-IGDWTTKLVAGNTLGVVAAH-VE  253 (461)
Q Consensus       177 ~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~-~~~~~~~~~i~~L~~ll~-~~~~~~~~~a~~~L~~l~~~-~~  253 (461)
                      .+..++..++.+|.++-+.++..|+..+.+++...+. ...+     +..|+.+++ ++.-........+++.++.- |+
T Consensus        29 ~d~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~epl-----~~kL~vm~~ksEaIpltqeIa~a~G~la~i~Pe  103 (253)
T 2db0_A           29 YDESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPM-----LKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPE  103 (253)
T ss_dssp             HCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHHH-----HHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCHH
T ss_pred             hhHHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHHH-----HHHHHHHHhhcccCchHHHHHHHHhHHHHhCHH
Confidence            3445788999999999999999999999999988876 4443     556677766 55556656677788888864 33


Q ss_pred             chhhhhhcCCHHHHHHHhCCCChhHHHHHHHHHHHhcc-CcccHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCch
Q 044999          254 YITPVAEAGAIPLYAELLQGPDSTGKEISEDVFCILAV-SEANANAIAEHLVRILREGDNEANAAAADVLWDLAGYKHSV  332 (461)
Q Consensus       254 ~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~-~~~~~~~i~~~l~~ll~~~~~~~~~~a~~~L~~l~~~~~~~  332 (461)
                      .-..     .+|.+..-..-+++.++.+...+|..++. +|+.-..++..+..++.+++..-+-.|+..+..+..+   .
T Consensus       104 ~v~~-----vVp~lfanyrigd~kikIn~~yaLeeIaranP~l~~~v~rdi~smltskd~~Dkl~aLnFi~alGen---~  175 (253)
T 2db0_A          104 LVKS-----MIPVLFANYRIGDEKTKINVSYALEEIAKANPMLMASIVRDFMSMLSSKNREDKLTALNFIEAMGEN---S  175 (253)
T ss_dssp             HHHH-----HHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTSCSSHHHHHHHHHHHHTCCTT---T
T ss_pred             HHHh-----hHHHHHHHHhcCCccceecHHHHHHHHHHhChHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcc---C
Confidence            3333     37888888888899999999999999964 5555556668899999999988888888877777432   2


Q ss_pred             hHHhhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcC-ChhhHHHHHhCCChHHHHHhccCCCHHHHHHHHHHHHHhcC
Q 044999          333 PVIRNSGAIPILVNLLRGENDEVREKVSGAIAQLSY-NEADRVALADAGAVPIMIELLHDESEELRDNAAESLINFSE  409 (461)
Q Consensus       333 ~~l~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~-~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~  409 (461)
                      ...+. -.+|.|..+|.+.+.-|+..+..+|.+++. ++..|..+.      .-++-+.+.+..++.....+|..+..
T Consensus       176 ~~yv~-PfLprL~aLL~D~deiVRaSaVEtL~~lA~~npklRkii~------~kl~e~~D~S~lv~~~V~egL~rl~l  246 (253)
T 2db0_A          176 FKYVN-PFLPRIINLLHDGDEIVRASAVEALVHLATLNDKLRKVVI------KRLEELNDTSSLVNKTVKEGISRLLL  246 (253)
T ss_dssp             HHHHG-GGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHHHHHHHH------HHHHHCCCSCHHHHHHHHHHHHHHHH
T ss_pred             ccccC-cchHHHHHHHcCcchhhhHHHHHHHHHHHHcCHHHHHHHH------HHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence            22222 378999999999999999999999999999 887665543      23445677888888888888887753

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}

Probab=98.81  E-value=5.7e-08  Score=84.87  Aligned_cols=179  Identities=12%  Similarity=0.122  Sum_probs=139.5

Q ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHhhcC-chh-HHHHHhcCChHHHHHhcc-cCCHHHHHHHHHHHHHHhcC--ccchhh
Q 044999          183 RYLVEAVSFGSMVSRERACQAIGLLAVT-GRA-RRLLVELGVIPGLVELFH-IGDWTTKLVAGNTLGVVAAH--VEYITP  257 (461)
Q Consensus       183 ~~l~~~l~~~~~~~~~~a~~~L~~l~~~-~~~-~~~~~~~~~i~~L~~ll~-~~~~~~~~~a~~~L~~l~~~--~~~~~~  257 (461)
                      +.+.+.+.+.++..|..++..|..+... +.. ...+  ..+++.|...+. +.+..++..|+.++..++..  +.... 
T Consensus        18 ~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~--~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~-   94 (242)
T 2qk2_A           18 KDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEY--GALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSN-   94 (242)
T ss_dssp             TTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCC--HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHH-
T ss_pred             HHHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCH--HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHH-
Confidence            4577888899999999999999998765 221 1111  134677788884 88999999999999999965  21111 


Q ss_pred             hhhcCCHHHHHHHhCCCChhHHHHHHHHHHHhccCcccHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhCC--CC--chh
Q 044999          258 VAEAGAIPLYAELLQGPDSTGKEISEDVFCILAVSEANANAIAEHLVRILREGDNEANAAAADVLWDLAGY--KH--SVP  333 (461)
Q Consensus       258 ~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~l~~ll~~~~~~~~~~a~~~L~~l~~~--~~--~~~  333 (461)
                       .-..++|.++..+.+.++.+|..+..+|..+..... -..+.+.+...+++.++.++..++..|..+...  ++  ...
T Consensus        95 -~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~-~~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~~~  172 (242)
T 2qk2_A           95 -YASACVPSLLEKFKEKKPNVVTALREAIDAIYASTS-LEAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKK  172 (242)
T ss_dssp             -HHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC-HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCCHH
T ss_pred             -HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCccHH
Confidence             113468999999999999999999999999976544 344558999999999999999999999996543  22  122


Q ss_pred             HHhhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcC
Q 044999          334 VIRNSGAIPILVNLLRGENDEVREKVSGAIAQLSY  368 (461)
Q Consensus       334 ~l~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~  368 (461)
                      .+  ...+|.|..++.+.++++|..|..+++.++.
T Consensus       173 ~l--~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~  205 (242)
T 2qk2_A          173 LL--KLLTTSLVKTLNEPDPTVRDSSAEALGTLIK  205 (242)
T ss_dssp             HH--HHHHHHHHHHHTSSCHHHHHHHHHHHHHHHH
T ss_pred             HH--HHHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Confidence            22  3578999999999999999999999999986

>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}

Probab=98.74  E-value=1.4e-06  Score=79.08  Aligned_cols=272  Identities=12%  Similarity=0.064  Sum_probs=157.8

Q ss_pred             HHHHhcCCCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHhhCChHHHHHHHhc
Q 044999          100 NSVLRLFPQSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLNSCNDGTRRYLLEILSALALLREVRRVLICL  179 (461)
Q Consensus       100 ~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~  179 (461)
                      ..+++++.++|...++..-..+..++...++   .+   =++..+.+=++++++-+|..|+++++++...+-.. .    
T Consensus        71 ~~v~kl~~s~d~~lKrLvYLyl~~~~~~~~e---~i---Lv~Nsl~kDl~~~N~~iR~lALRtL~~I~~~~m~~-~----  139 (355)
T 3tjz_B           71 FAMTKLFQSNDPTLRRMCYLTIKEMSCIAED---VI---IVTSSLTKDMTGKEDSYRGPAVRALCQITDSTMLQ-A----  139 (355)
T ss_dssp             HHHHGGGGCCCHHHHHHHHHHHHHHTTTSSC---GG---GGHHHHHHHHHSSCHHHHHHHHHHHHHHCCTTTHH-H----
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHhCCCHHH---HH---HHHHHHHhhcCCCcHhHHHHHHHHHhcCCCHHHHH-H----
Confidence            4567899999999777776666677755322   12   24677888889999999999999999997443222 2    


Q ss_pred             CCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhcccCCHHHHHHHHHHHHHHhcCccchhhhh
Q 044999          180 GGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRARRLLVELGVIPGLVELFHIGDWTTKLVAGNTLGVVAAHVEYITPVA  259 (461)
Q Consensus       180 ~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~  259 (461)
                       ..+.+-+.+.+.++-+|..|+-+..++....+..   + .+++..+-+++.+.++-++.+|+.+|..+..++  +.   
T Consensus       140 -l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe~---v-~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d--~~---  209 (355)
T 3tjz_B          140 -IERYMKQAIVDKVPSVSSSALVSSLHLLKCSFDV---V-KRWVNEAQEAASSDNIMVQYHALGLLYHVRKND--RL---  209 (355)
T ss_dssp             -HHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHHH---H-HTTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTC--HH---
T ss_pred             -HHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHHH---H-HHHHHHHHHHhcCCCccHHHHHHHHHHHHHhhc--hH---
Confidence             3556778889999999999999999998766652   2 258899999999999999999999999998653  11   


Q ss_pred             hcCCHHHHHHHhCCC---ChhHHHHHHHHHHHhccCc--ccHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCchhH
Q 044999          260 EAGAIPLYAELLQGP---DSTGKEISEDVFCILAVSE--ANANAIAEHLVRILREGDNEANAAAADVLWDLAGYKHSVPV  334 (461)
Q Consensus       260 ~~g~i~~L~~ll~~~---~~~~~~~a~~~L~~l~~~~--~~~~~i~~~l~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~  334 (461)
                         .+..++.-+...   ++-.+-..+..+..+...+  .....+.+.+..+|++.++.+..+|+.++..+...+..   
T Consensus       210 ---a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~~~~~---  283 (355)
T 3tjz_B          210 ---AVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDGSRDSPLFDFIESCLRNKHEMVVYEAASAIVNLPGCSAK---  283 (355)
T ss_dssp             ---HHHHHHHHHHSSCCSCHHHHHHHHHHHTCC-----------------CCCCCSSHHHHHHHHHHHTC----------
T ss_pred             ---HHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCHH---
Confidence               133444444332   3444444444444444333  23455558888899999999999999999998653221   


Q ss_pred             HhhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcC-ChhhHHHHHhCCChHHHHHhccCCCHHHHHHHHHHH
Q 044999          335 IRNSGAIPILVNLLRGENDEVREKVSGAIAQLSY-NEADRVALADAGAVPIMIELLHDESEELRDNAAESL  404 (461)
Q Consensus       335 l~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~-~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L  404 (461)
                      . ...++..|..++.++++.+|-.|+..|..+.. +|+.   +..  +-..+.+++.+++..+...|...|
T Consensus       284 ~-~~~a~~~L~~fLss~d~niryvaLr~L~~l~~~~P~~---v~~--~n~~ie~li~d~n~sI~t~Aittl  348 (355)
T 3tjz_B          284 E-LAPAVSVLQLFCSSPKAALRYAAVRTLNKVAMKHPSA---VTA--CNLDLENLVTDANRSIATLAITTL  348 (355)
T ss_dssp             -----CCCTHHHHHHSSSSSSHHHHHHCC------------------------------------------
T ss_pred             H-HHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHCcHH---HHH--HHHHHHHHccCCcHhHHHHHHHHh
Confidence            1 12346677788888899999999998888887 5542   222  346678888888888877776655

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}

Probab=98.72  E-value=3.3e-05  Score=61.12  Aligned_cols=216  Identities=13%  Similarity=0.130  Sum_probs=161.4

Q ss_pred             HHhHHHHHHHhhcCCHHHHHHHHHHHHhhcCCCchhHHHhhHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHhcCCch
Q 044999            9 EEAFNRFEQAVVSGSEALQVKALTKLARVSKFAPQDILAATIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQADGA   88 (461)
Q Consensus         9 ~~~~~~l~~ll~~~~~~~~~~a~~~l~~la~~~~~~~l~~~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~   88 (461)
                      ++.++.+++++.++-=.|+.+|...+..+++. ..+.+.-.+.+|+.+++.    ++. .......+.++..++.. .++
T Consensus        31 ~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~-~~el~epl~~kL~vm~~k----sEa-IpltqeIa~a~G~la~i-~Pe  103 (253)
T 2db0_A           31 ESVLKKLIELLDDDLWTVVKNAISIIMVIAKT-REDLYEPMLKKLFSLLKK----SEA-IPLTQEIAKAFGQMAKE-KPE  103 (253)
T ss_dssp             HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTT-CGGGHHHHHHHHHHHHHH----CCS-HHHHHHHHHHHHHHHHH-CHH
T ss_pred             HHHHHHHHHHhccHHHHHHHhHHHHHHHHHHH-hHHHHHHHHHHHHHHHhh----ccc-CchHHHHHHHHhHHHHh-CHH
Confidence            45667778877777778999999999999822 122223378888889886    554 33433456899999985 333


Q ss_pred             hHHHHHhcCCHHHHHhcCCCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHhhC
Q 044999           89 LATEIGQSGVINSVLRLFPQSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLNSCNDGTRRYLLEILSALAL  168 (461)
Q Consensus        89 ~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~  168 (461)
                      ...     +.+|.+..-.+-+++.++...++++..++..+++.-..+     +..+..++.+++..-+..|+..+..+..
T Consensus       104 ~v~-----~vVp~lfanyrigd~kikIn~~yaLeeIaranP~l~~~v-----~rdi~smltskd~~Dkl~aLnFi~alGe  173 (253)
T 2db0_A          104 LVK-----SMIPVLFANYRIGDEKTKINVSYALEEIAKANPMLMASI-----VRDFMSMLSSKNREDKLTALNFIEAMGE  173 (253)
T ss_dssp             HHH-----HHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHHHHH-----HHHHHHHTSCSSHHHHHHHHHHHHTCCT
T ss_pred             HHH-----hhHHHHHHHHhcCCccceecHHHHHHHHHHhChHHHHHH-----HHHHHHHhcCCChHHHHHHHHHHHHHhc
Confidence            222     346888888889999999999999999998887765554     4458889999998888888888887773


Q ss_pred             ChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCchh-HHHHHhcCChHHHHHhcccCCHHHHHHHHHHHHH
Q 044999          169 LREVRRVLICLGGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRA-RRLLVELGVIPGLVELFHIGDWTTKLVAGNTLGV  247 (461)
Q Consensus       169 ~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~-~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~  247 (461)
                      +..  +.  -...+|.++.+|.+.|.-+|..+..+|.+++..++. +..      +..-++-+.+.+..++......|..
T Consensus       174 n~~--~y--v~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~npklRki------i~~kl~e~~D~S~lv~~~V~egL~r  243 (253)
T 2db0_A          174 NSF--KY--VNPFLPRIINLLHDGDEIVRASAVEALVHLATLNDKLRKV------VIKRLEELNDTSSLVNKTVKEGISR  243 (253)
T ss_dssp             TTH--HH--HGGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHHHHHH------HHHHHHHCCCSCHHHHHHHHHHHHH
T ss_pred             cCc--cc--cCcchHHHHHHHcCcchhhhHHHHHHHHHHHHcCHHHHHH------HHHHHHHhcCcHHHHHHHHHHHHHH
Confidence            321  11  135799999999999999999999999999998877 433      4455666778888888888888888


Q ss_pred             HhcC
Q 044999          248 VAAH  251 (461)
Q Consensus       248 l~~~  251 (461)
                      +...
T Consensus       244 l~l~  247 (253)
T 2db0_A          244 LLLL  247 (253)
T ss_dssp             HHHC
T ss_pred             HHHH
Confidence            7654

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A

Probab=98.69  E-value=8.1e-05  Score=78.46  Aligned_cols=378  Identities=10%  Similarity=0.023  Sum_probs=212.1

Q ss_pred             HHHHHHHhhc--CCHHHHHHHHHHHHhhc--CCC-------chhHHHh-hHHHHHHhhccCCCCCCCcHHHHHHHHHHHH
Q 044999           12 FNRFEQAVVS--GSEALQVKALTKLARVS--KFA-------PQDILAA-TIPILARLLGENNFSGNLTRSIQQAAAYCLK   79 (461)
Q Consensus        12 ~~~l~~ll~~--~~~~~~~~a~~~l~~la--~~~-------~~~~l~~-~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~   79 (461)
                      ...+.+.+.+  .+..+|..|+..|.+..  +..       ....-+. +=..++..+..    .  ++.++...+.++.
T Consensus        37 ~~~L~~il~~~~~~~~vR~~A~i~lkn~i~~~w~~~~~~~~l~~~~k~~ik~~ll~~l~~----~--~~~ir~~l~~~ia  110 (960)
T 1wa5_C           37 GLTLLHVIASTNLPLSTRLAGALFFKNFIKRKWVDENGNHLLPANNVELIKKEIVPLMIS----L--PNNLQVQIGEAIS  110 (960)
T ss_dssp             HHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHSBCSSSCBSSCHHHHHHHHHHHHHHHHH----S--CHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCCCcccCCCCCHHHHHHHHHHHHHHHHh----C--CHHHHHHHHHHHH
Confidence            3456666644  36789999999998876  221       1112222 33455666654    2  2456666888898


Q ss_pred             HHHhcCCchhHHHHHh--cCCHHHHHhcCCCCCHHHHHHHHHHHHHHhccC------hhhHHHHH--HcCCHHHHHHH--
Q 044999           80 QIASQADGALATEIGQ--SGVINSVLRLFPQSDDSFRTVLVKCLRVFVTFG------NENRVIVA--RNGGLEIVIDL--  147 (461)
Q Consensus        80 ~l~~~~~~~~~~~~~~--~~~l~~L~~ll~~~~~~~~~~~~~~l~~l~~~~------~~~~~~~~--~~g~i~~L~~l--  147 (461)
                      .++.. +.      .+  .+.++.|++.++++++..+..+..++..++...      ++.+..+.  -....+.++.+  
T Consensus       111 ~ia~~-d~------p~~Wp~ll~~L~~~l~s~~~~~~~~aL~~l~~i~~~~~~~~~~~~~~~~l~~~l~~~~~~ll~~~~  183 (960)
T 1wa5_C          111 SIADS-DF------PDRWPTLLSDLASRLSNDDMVTNKGVLTVAHSIFKRWRPLFRSDELFLEIKLVLDVFTAPFLNLLK  183 (960)
T ss_dssp             HHHHH-HS------TTTCTTHHHHHHTTCCSSCTTHHHHHHHHHHHHHGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHh-hC------ccchhHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHH
Confidence            88873 11      12  346899999999888777777887787777522      12222111  11123333332  


Q ss_pred             -----hcCCCh---------HHHHHHHHHHHHhhC--ChHHHHHHHhcCCHHHHHHHHcCC------C---------HHH
Q 044999          148 -----LNSCND---------GTRRYLLEILSALAL--LREVRRVLICLGGLRYLVEAVSFG------S---------MVS  196 (461)
Q Consensus       148 -----l~~~~~---------~~~~~a~~~L~~l~~--~~~~~~~~~~~~~l~~l~~~l~~~------~---------~~~  196 (461)
                           +.....         .+...+++++..+..  .++.-.... ...++.+..++...      +         +.+
T Consensus       184 ~~~~~l~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~~~~~~~~~~~-~~~~~~~~~~l~~~~p~~~~d~d~~~~~~~~~v  262 (960)
T 1wa5_C          184 TVDEQITANENNKASLNILFDVLLVLIKLYYDFNCQDIPEFFEDNI-QVGMGIFHKYLSYSNPLLEDPDETEHASVLIKV  262 (960)
T ss_dssp             HHHHHTTCCC--CHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHTH-HHHHHHHHHHHSCCSCCCC------CCCHHHHH
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHH-HHHHHHHHHHHcCCCCcccCCcccccccHHHHH
Confidence                 443321         222335666666541  122111100 12345555555431      1         246


Q ss_pred             HHHHHHHHHHhhcCchh--HHHHHhcCChHHHHHhcc-----cCCHHHHHHHHHHHHHHhcCccchhhhhhcCCHHHHH-
Q 044999          197 RERACQAIGLLAVTGRA--RRLLVELGVIPGLVELFH-----IGDWTTKLVAGNTLGVVAAHVEYITPVAEAGAIPLYA-  268 (461)
Q Consensus       197 ~~~a~~~L~~l~~~~~~--~~~~~~~~~i~~L~~ll~-----~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~-  268 (461)
                      +.+++.++..+......  ...+  ..+++..+..+.     ..++.+...++..+..++..+..+..+.....++.++ 
T Consensus       263 k~~~~~~l~~l~~~~~~~f~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~al~fl~~~~~~~~~~~~~~~~~~l~~li~  340 (960)
T 1wa5_C          263 KSSIQELVQLYTTRYEDVFGPMI--NEFIQITWNLLTSISNQPKYDILVSKSLSFLTAVTRIPKYFEIFNNESAMNNITE  340 (960)
T ss_dssp             HHHHHHHHHHHHHHCHHHHHHHH--HHHHHHHHHHHHHCCSCTTSHHHHHHHHHHHHHHHTSHHHHGGGCSHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhcCCCcCcHHHHHHHHHHHHHHhCcHhHHHHHcCchHHHHHHH
Confidence            78888888887754443  2222  234555555554     3456788888988888876543333221112233333 


Q ss_pred             ----HHhCC-----------------------CChhHHHHHHHHHHHhccCcccHHHHH----HHHHHHhc------cCC
Q 044999          269 ----ELLQG-----------------------PDSTGKEISEDVFCILAVSEANANAIA----EHLVRILR------EGD  311 (461)
Q Consensus       269 ----~ll~~-----------------------~~~~~~~~a~~~L~~l~~~~~~~~~i~----~~l~~ll~------~~~  311 (461)
                          ..+.-                       .....|..|..+|..++....  ..+.    +.+.+.+.      +.+
T Consensus       341 ~~i~~~m~~~~~d~e~w~~dp~e~i~~d~e~~d~~s~R~aa~~~L~~l~~~~~--~~v~~~~l~~i~~~l~~~~~~~~~~  418 (960)
T 1wa5_C          341 QIILPNVTLREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTDFLKELKEKNE--VLVTNIFLAHMKGFVDQYMSDPSKN  418 (960)
T ss_dssp             HTHHHHHSCCGGGTTTTTTCHHHHHHHHHHC----CHHHHHHHHHHHHHHHCH--HHHHHHHHHHHHHHHHHHHC----C
T ss_pred             HHhHHhcCCCHHHHHHHhcCHHHHHHhccCcccccCcHHHHHHHHHHHHHHcc--hhHHHHHHHHHHHHHHHhccCcchh
Confidence                23210                       012356677777877765443  2222    55555565      567


Q ss_pred             HHHHHHHHHHHHHhhCCCCchhHHhhc-----CCHHH----HHHhhcCC---CHHHHHHHHHHHHHhcCChhhHHHHHhC
Q 044999          312 NEANAAAADVLWDLAGYKHSVPVIRNS-----GAIPI----LVNLLRGE---NDEVREKVSGAIAQLSYNEADRVALADA  379 (461)
Q Consensus       312 ~~~~~~a~~~L~~l~~~~~~~~~l~~~-----g~i~~----L~~ll~~~---~~~v~~~a~~~L~~l~~~~~~~~~~~~~  379 (461)
                      +..++.|+.+++.++........-...     ...+.    ++..+.++   ++.+|..++++++.++..- ..+.+.  
T Consensus       419 w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~-~~~~l~--  495 (960)
T 1wa5_C          419 WKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQL-TKAQLI--  495 (960)
T ss_dssp             HHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGS-CHHHHH--
T ss_pred             HHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhC-CHHHHH--
Confidence            889999999999998531111100000     22222    33334555   8999999999999998721 122222  


Q ss_pred             CChHHHHHhccCCCHHHHHHHHHHHHHhcCC
Q 044999          380 GAVPIMIELLHDESEELRDNAAESLINFSED  410 (461)
Q Consensus       380 ~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~  410 (461)
                      ..++.+++.+.++++.++..|+.+|.+++..
T Consensus       496 ~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~  526 (960)
T 1wa5_C          496 ELMPILATFLQTDEYVVYTYAAITIEKILTI  526 (960)
T ss_dssp             HHHHHHHHHTTCSCHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHhCCCChhHHHHHHHHHHHHHhc
Confidence            2477888888888899999999999999874

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}

Probab=98.68  E-value=4.2e-07  Score=79.30  Aligned_cols=180  Identities=12%  Similarity=0.136  Sum_probs=138.5

Q ss_pred             hHHHHHhcccCCHHHHHHHHHHHHHHhcC-ccchhhhhhcCCHHHHHHHh-CCCChhHHHHHHHHHHHhccC--cccH--
Q 044999          223 IPGLVELFHIGDWTTKLVAGNTLGVVAAH-VEYITPVAEAGAIPLYAELL-QGPDSTGKEISEDVFCILAVS--EANA--  296 (461)
Q Consensus       223 i~~L~~ll~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~g~i~~L~~ll-~~~~~~~~~~a~~~L~~l~~~--~~~~--  296 (461)
                      -+.+.+.+.+.++..|..|+..|..+... +.....-. ..+++.|...+ ++.+..++..++.++..|+..  +...  
T Consensus        17 ~~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~-~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~   95 (242)
T 2qk2_A           17 PKDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEY-GALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNY   95 (242)
T ss_dssp             CTTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCC-HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHH
T ss_pred             CHHHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCH-HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence            34678888899999999999999998765 32211111 24577888889 488999999999999999642  2222  


Q ss_pred             -HHHHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCchhHHhhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcC-C-hh--
Q 044999          297 -NAIAEHLVRILREGDNEANAAAADVLWDLAGYKHSVPVIRNSGAIPILVNLLRGENDEVREKVSGAIAQLSY-N-EA--  371 (461)
Q Consensus       297 -~~i~~~l~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~-~-~~--  371 (461)
                       ..+.+.++..+.+.++.+|..|..+|..+......      ...++.+...+.+.++.+|..++..|..+.. . ++  
T Consensus        96 ~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~~------~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~  169 (242)
T 2qk2_A           96 ASACVPSLLEKFKEKKPNVVTALREAIDAIYASTSL------EAQQESIVESLSNKNPSVKSETALFIARALTRTQPTAL  169 (242)
T ss_dssp             HHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSCH------HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGC
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCCH------HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCc
Confidence             23339999999999999999999999999865331      1357778899999999999999999999654 2 33  


Q ss_pred             hHHHHHhCCChHHHHHhccCCCHHHHHHHHHHHHHhcCCC
Q 044999          372 DRVALADAGAVPIMIELLHDESEELRDNAAESLINFSEDP  411 (461)
Q Consensus       372 ~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~  411 (461)
                      ....+.  ..+|.|..++.+.++++|..|..++..++..-
T Consensus       170 ~~~~l~--~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~v  207 (242)
T 2qk2_A          170 NKKLLK--LLTTSLVKTLNEPDPTVRDSSAEALGTLIKLM  207 (242)
T ss_dssp             CHHHHH--HHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHH--HHHHHHHHHhcCCChHHHHHHHHHHHHHHHHc
Confidence            233332  47899999999999999999999999887443

>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9

Probab=98.66  E-value=6.3e-06  Score=76.56  Aligned_cols=309  Identities=10%  Similarity=0.087  Sum_probs=197.0

Q ss_pred             CCHHHHHhcCC-CCCHHHHHHHHHHHHHHhccCh---hhHHHHHHcCCHH-HHHHH-hcCCChHHHHHHHHHHHHhh-CC
Q 044999           97 GVINSVLRLFP-QSDDSFRTVLVKCLRVFVTFGN---ENRVIVARNGGLE-IVIDL-LNSCNDGTRRYLLEILSALA-LL  169 (461)
Q Consensus        97 ~~l~~L~~ll~-~~~~~~~~~~~~~l~~l~~~~~---~~~~~~~~~g~i~-~L~~l-l~~~~~~~~~~a~~~L~~l~-~~  169 (461)
                      .+...++++|+ ..+.++.+.....+..+...++   .....+.+..... .+... +..+++-....+..++..++ ..
T Consensus        77 ~~~~~~l~lL~~~~~~d~vqYvL~Li~DlL~~~~~~~~~~~~f~~~~~~~~~l~~~~~~~dd~~~ll~a~~l~~ll~~~~  156 (480)
T 1ho8_A           77 KTLIPLIHLLSTSDNEDCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSLKGDFQTVLISGFNVVSLLVQNG  156 (480)
T ss_dssp             TTHHHHHHHHHSCCCHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHCTTHHHHHHHHCSCSSHHHHHHHHHHHHHHHTSTT
T ss_pred             hHHHHHHHHHhhcChHHHHHHHHHHHHHHHhcCcchHHHHHHHhhCcccchHHHHHHhcccchHHHHHHHHHHHHHhccC
Confidence            45677888877 4667777777777777777665   3334444433222 23332 33333445566666655554 11


Q ss_pred             ---hHHHHHHHhcCCHHHHHHHHcCC-CHHHHHHHHHHHHHhhcCchhHHHHHhcC--ChHHHHHhccc-----------
Q 044999          170 ---REVRRVLICLGGLRYLVEAVSFG-SMVSRERACQAIGLLAVTGRARRLLVELG--VIPGLVELFHI-----------  232 (461)
Q Consensus       170 ---~~~~~~~~~~~~l~~l~~~l~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~--~i~~L~~ll~~-----------  232 (461)
                         .+....+....   .++..|... +.+.+..++.++..|...++.|..+.+.+  .++.++.++..           
T Consensus       157 ~~~~~~l~~l~~~~---~~~~~L~~~~~~~~~~i~v~~L~~Ll~~~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~  233 (480)
T 1ho8_A          157 LHNVKLVEKLLKNN---NLINILQNIEQMDTCYVCIRLLQELAVIPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIV  233 (480)
T ss_dssp             TCCHHHHHHHHHCH---HHHHHHHCTTCHHHHHHHHHHHHHHHTSHHHHHHHHTTHHHHHHHHHHHHHHHHC--------
T ss_pred             CccHhHHHHHhhhH---HHHHHhccccCCchHHHHHHHHHHHhcchhHHHHHHHcccchhHHHHHHHHHhhccccccccc
Confidence               12222222211   355556553 45667789999999999999988887643  35666544331           


Q ss_pred             ----C--CHHHHHHHHHHHHHHhcCccchhhhhhcCCH--HHHHHHhCCC-ChhHHHHHHHHHHHhccCcc-c----HH-
Q 044999          233 ----G--DWTTKLVAGNTLGVVAAHVEYITPVAEAGAI--PLYAELLQGP-DSTGKEISEDVFCILAVSEA-N----AN-  297 (461)
Q Consensus       233 ----~--~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i--~~L~~ll~~~-~~~~~~~a~~~L~~l~~~~~-~----~~-  297 (461)
                          .  ....+..++-+++-|+..++....+...++.  +.|+.+++.. .+.+.+-++.+|.|+..... .    .. 
T Consensus       234 ~~~~~~~~~Ql~Y~~ll~iWlLSF~~~~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~~~  313 (480)
T 1ho8_A          234 ATNSNHLGIQLQYHSLLLIWLLTFNPVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQ  313 (480)
T ss_dssp             -----CCHHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHH
T ss_pred             cccCCCccHHHHHHHHHHHHHHHcCHHHHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHHHH
Confidence                1  2456789999999999997777777766643  5677777654 67888999999999965441 1    12 


Q ss_pred             HHH----HHHHHHhccC---CHHHHHHHHH-------HHHHhhC---------------CCCch---------hHHhhc-
Q 044999          298 AIA----EHLVRILREG---DNEANAAAAD-------VLWDLAG---------------YKHSV---------PVIRNS-  338 (461)
Q Consensus       298 ~i~----~~l~~ll~~~---~~~~~~~a~~-------~L~~l~~---------------~~~~~---------~~l~~~-  338 (461)
                      .+.    ..+++.|...   |+++.+..-.       .+..++.               +|..+         ..+-+. 
T Consensus       314 ~~~~~~~l~~l~~L~~rk~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~e~~  393 (480)
T 1ho8_A          314 LLLLGNALPTVQSLSERKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDN  393 (480)
T ss_dssp             HHHHHCHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSGG
T ss_pred             HHHHccchHHHHHHhhCCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHHHhcc
Confidence            222    4555666443   5554332211       1111211               12221         122221 


Q ss_pred             -CCHHHHHHhhcC----------CCHHHHHHHHHHHHHhcC-ChhhHHHHHhCCChHHHHHhccCCCHHHHHHHHHHHHH
Q 044999          339 -GAIPILVNLLRG----------ENDEVREKVSGAIAQLSY-NEADRVALADAGAVPIMIELLHDESEELRDNAAESLIN  406 (461)
Q Consensus       339 -g~i~~L~~ll~~----------~~~~v~~~a~~~L~~l~~-~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~  406 (461)
                       ..+..|+++|.+          .++.+..-|+.=++.+++ .|..+..+-+.|+=..+++++.+++++++.+|..++..
T Consensus       394 ~~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~avQk  473 (480)
T 1ho8_A          394 YKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQA  473 (480)
T ss_dssp             GHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHhhhccccccccCCCcceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence             247889999973          357788888999999999 99999999999999999999999999999999999887


Q ss_pred             hc
Q 044999          407 FS  408 (461)
Q Consensus       407 l~  408 (461)
                      +.
T Consensus       474 lm  475 (480)
T 1ho8_A          474 II  475 (480)
T ss_dssp             HH
T ss_pred             HH
Confidence            64

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}

Probab=98.61  E-value=3.9e-07  Score=79.49  Aligned_cols=184  Identities=5%  Similarity=0.024  Sum_probs=136.1

Q ss_pred             HHHHHcCCCHHHHHHHHHHHHH-hhcCchh-HHHHHh-cCChHHHHHhc-ccCCHHHHHHHHHHHHHHhcC-c-cchhhh
Q 044999          185 LVEAVSFGSMVSRERACQAIGL-LAVTGRA-RRLLVE-LGVIPGLVELF-HIGDWTTKLVAGNTLGVVAAH-V-EYITPV  258 (461)
Q Consensus       185 l~~~l~~~~~~~~~~a~~~L~~-l~~~~~~-~~~~~~-~~~i~~L~~ll-~~~~~~~~~~a~~~L~~l~~~-~-~~~~~~  258 (461)
                      +.+.+.+.++..|..++..|.. +....+. ...-.+ ...+..|...+ ++.+..++..|+.+|..++.. . +.-..-
T Consensus        21 f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~  100 (249)
T 2qk1_A           21 FQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKD  100 (249)
T ss_dssp             HHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHH
T ss_pred             HHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHH
Confidence            4566788999999999999999 8643211 100001 12467777788 688999999999999999964 2 111101


Q ss_pred             hhcCCHHHHHHHhCCCChhHHHHHHHHHHHhccCc------ccHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCch
Q 044999          259 AEAGAIPLYAELLQGPDSTGKEISEDVFCILAVSE------ANANAIAEHLVRILREGDNEANAAAADVLWDLAGYKHSV  332 (461)
Q Consensus       259 ~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~------~~~~~i~~~l~~ll~~~~~~~~~~a~~~L~~l~~~~~~~  332 (461)
                      ...-++|.+++.+++..+.++..+..+|..+...-      ..-..+.+.+...+++.++.+++.++.+|..+.......
T Consensus       101 y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~~  180 (249)
T 2qk1_A          101 YVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDG  180 (249)
T ss_dssp             HHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCSC
T ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCc
Confidence            11235899999999999999999999988885432      224456688999999999999999999999998542221


Q ss_pred             -hH--Hhh-cCCHHHHHHhhcCCCHHHHHHHHHHHHHhcC
Q 044999          333 -PV--IRN-SGAIPILVNLLRGENDEVREKVSGAIAQLSY  368 (461)
Q Consensus       333 -~~--l~~-~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~  368 (461)
                       ..  -.- ...+|.|.+++.+.++.+|..|..++..++.
T Consensus       181 ~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~  220 (249)
T 2qk1_A          181 YSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIK  220 (249)
T ss_dssp             SHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence             11  122 5789999999999999999999999999876

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=98.59  E-value=0.00011  Score=74.66  Aligned_cols=311  Identities=12%  Similarity=0.046  Sum_probs=196.1

Q ss_pred             HHhHHHHHHHhh---cCCHHHHHHHHHHHHhhc-CCCchhHHHhhHHHHHHhhccCC-CCCCC-cHHHHHHHHHHHHHHH
Q 044999            9 EEAFNRFEQAVV---SGSEALQVKALTKLARVS-KFAPQDILAATIPILARLLGENN-FSGNL-TRSIQQAAAYCLKQIA   82 (461)
Q Consensus         9 ~~~~~~l~~ll~---~~~~~~~~~a~~~l~~la-~~~~~~~l~~~i~~l~~~l~~~~-~~~~~-~~~~~~~a~~~L~~l~   82 (461)
                      ++.+..+.+-+.   ++++.++.-|+.+||.+. ....     +++..|...|..+. ..++. .+.++..|+..|.-..
T Consensus       391 ~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~-----~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~  465 (963)
T 4ady_A          391 LEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGR-----DTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAA  465 (963)
T ss_dssp             TTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTH-----HHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcH-----HHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHh
Confidence            345666666666   678899999999999988 3332     24566666666410 01111 1334444777887765


Q ss_pred             hc-CCchhHHHHHhcCCHHHHHhcCCCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHH-hcCCChHHHHHHH
Q 044999           83 SQ-ADGALATEIGQSGVINSVLRLFPQSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDL-LNSCNDGTRRYLL  160 (461)
Q Consensus        83 ~~-~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~l-l~~~~~~~~~~a~  160 (461)
                      -+ +++         ..++.|...+.+.+..++..++.++..+-... .+..      ++..++.. .++.+..+++.++
T Consensus       466 ~GS~~e---------ev~e~L~~~L~dd~~~~~~~AalALGli~vGT-gn~~------ai~~LL~~~~e~~~e~vrR~aa  529 (963)
T 4ady_A          466 MGSANI---------EVYEALKEVLYNDSATSGEAAALGMGLCMLGT-GKPE------AIHDMFTYSQETQHGNITRGLA  529 (963)
T ss_dssp             TTCCCH---------HHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTC-CCHH------HHHHHHHHHHHCSCHHHHHHHH
T ss_pred             cCCCCH---------HHHHHHHHHHhcCCHHHHHHHHHHHhhhhccc-CCHH------HHHHHHHHHhccCcHHHHHHHH
Confidence            42 112         13466777777777666667777776432211 1111      23344443 3456778999999


Q ss_pred             HHHHHhh-CChHHHHHHHhcCCHHHHHHHHc-CCCHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhcc-cCCHHH
Q 044999          161 EILSALA-LLREVRRVLICLGGLRYLVEAVS-FGSMVSRERACQAIGLLAVTGRARRLLVELGVIPGLVELFH-IGDWTT  237 (461)
Q Consensus       161 ~~L~~l~-~~~~~~~~~~~~~~l~~l~~~l~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~-~~~~~~  237 (461)
                      ..|+.+. ..++.         ++.+++.|. +.++.+|..++.+++--.....+..      .++.|+..+. +.+..+
T Consensus       530 lgLGll~~g~~e~---------~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~------aIq~LL~~~~~d~~d~V  594 (963)
T 4ady_A          530 VGLALINYGRQEL---------ADDLITKMLASDESLLRYGGAFTIALAYAGTGNNS------AVKRLLHVAVSDSNDDV  594 (963)
T ss_dssp             HHHHHHTTTCGGG---------GHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHH------HHHHHHHHHHHCSCHHH
T ss_pred             HHHHhhhCCChHH---------HHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHH------HHHHHHHHhccCCcHHH
Confidence            9998876 33333         455556654 5688999998888876544444322      3565666554 667889


Q ss_pred             HHHHHHHHHHHhcCccchhhhhhcCCHHHHHHH-hCCCChhHHHHHHHHHHHhccCcccHHHHHHHHHHHhccCCHHHHH
Q 044999          238 KLVAGNTLGVVAAHVEYITPVAEAGAIPLYAEL-LQGPDSTGKEISEDVFCILAVSEANANAIAEHLVRILREGDNEANA  316 (461)
Q Consensus       238 ~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~l-l~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~l~~ll~~~~~~~~~  316 (461)
                      +..|+.+|+.+....+        ..++.++.+ .++.++.+|..+..+|+.++...... .+++.|..+..+.++.|+.
T Consensus       595 RraAViaLGlI~~g~~--------e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~-~aid~L~~L~~D~d~~Vrq  665 (963)
T 4ady_A          595 RRAAVIALGFVLLRDY--------TTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQ-SAIDVLDPLTKDPVDFVRQ  665 (963)
T ss_dssp             HHHHHHHHHHHTSSSC--------SSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCH-HHHHHHHHHHTCSSHHHHH
T ss_pred             HHHHHHHHHhhccCCH--------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcH-HHHHHHHHHccCCCHHHHH
Confidence            9999999999876532        235666664 46779999999999999997655543 3446788888889999999


Q ss_pred             HHHHHHHHhhCCCCch--hHHhhcCCHHHHHHhhcC--CCHHHHHHHHHHHHHh
Q 044999          317 AAADVLWDLAGYKHSV--PVIRNSGAIPILVNLLRG--ENDEVREKVSGAIAQL  366 (461)
Q Consensus       317 ~a~~~L~~l~~~~~~~--~~l~~~g~i~~L~~ll~~--~~~~v~~~a~~~L~~l  366 (461)
                      .|+.+|+.+.....+.  ..+.  +....|..+..+  .++..+-.+..+.+-+
T Consensus       666 ~Ai~ALG~Ig~gtnna~~~rva--~~l~~L~~~~~dk~~d~~~~fga~iAqGll  717 (963)
T 4ady_A          666 AAMIALSMILIQQTEKLNPQVA--DINKNFLSVITNKHQEGLAKFGACVAQGIM  717 (963)
T ss_dssp             HHHHHHHHHSTTCCTTTCTTHH--HHHHHHHHHHHCSSSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCccccchHHH--HHHHHHHHHHhcccccHHHHHHHHHHHHHH
Confidence            9999999998542221  1111  133445566654  3455666665555544

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16

Probab=98.46  E-value=3.9e-08  Score=76.80  Aligned_cols=121  Identities=17%  Similarity=0.141  Sum_probs=92.7

Q ss_pred             cCCHHHHHHHhCCCChhHHHHHHHHHHHhccCcccHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCchhHHhhcCC
Q 044999          261 AGAIPLYAELLQGPDSTGKEISEDVFCILAVSEANANAIAEHLVRILREGDNEANAAAADVLWDLAGYKHSVPVIRNSGA  340 (461)
Q Consensus       261 ~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~l~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~  340 (461)
                      ...++.+..+++++++.+|..++.+|.++....      .+.|+.++.+.++.+|..|+++|+++..          ...
T Consensus        11 ~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~~~------~~~L~~~L~d~~~~vR~~A~~aL~~~~~----------~~a   74 (131)
T 1te4_A           11 SSGLVPRGSHMADENKWVRRDVSTALSRMGDEA------FEPLLESLSNEDWRIRGAAAWIIGNFQD----------ERA   74 (131)
T ss_dssp             ----------CCSSCCCSSSSCCSSTTSCSSTT------HHHHHHGGGCSCHHHHHHHHHHHGGGCS----------HHH
T ss_pred             cccHHHHHHHhcCCCHHHHHHHHHHHHHhCchH------HHHHHHHHcCCCHHHHHHHHHHHHhcCC----------HHH
Confidence            355788999999999999999988888774321      3788899999999999999999998853          235


Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhccCCCHHHHHHHHHHHHHh
Q 044999          341 IPILVNLLRGENDEVREKVSGAIAQLSYNEADRVALADAGAVPIMIELLHDESEELRDNAAESLINF  407 (461)
Q Consensus       341 i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l  407 (461)
                      ++.|+.++.++++.|+..++++|.++.. +         ..++.|+.+++++++.++..|..+|..+
T Consensus        75 ~~~L~~~L~d~~~~VR~~A~~aL~~~~~-~---------~a~~~L~~~l~d~~~~vr~~A~~aL~~i  131 (131)
T 1te4_A           75 VEPLIKLLEDDSGFVRSGAARSLEQIGG-E---------RVRAAMEKLAETGTGFARKVAVNYLETH  131 (131)
T ss_dssp             HHHHHHHHHHCCTHHHHHHHHHHHHHCS-H---------HHHHHHHHHTTSCCTHHHHHHHHHGGGC
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHhCc-H---------HHHHHHHHHHhCCCHHHHHHHHHHHHhC
Confidence            8889999999999999999999999863 1         2478899999999999999999988653

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A

Probab=98.42  E-value=6.9e-05  Score=78.99  Aligned_cols=344  Identities=13%  Similarity=0.068  Sum_probs=194.6

Q ss_pred             HHhHHHHHHHhhcCCHHHHHHHHHHHHhhc-CCCchhHHHhhHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHhcCC-
Q 044999            9 EEAFNRFEQAVVSGSEALQVKALTKLARVS-KFAPQDILAATIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQAD-   86 (461)
Q Consensus         9 ~~~~~~l~~ll~~~~~~~~~~a~~~l~~la-~~~~~~~l~~~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~-   86 (461)
                      +..-..++..+.+++..+|...+.++..++ .+-+ ..+-+.++.+++.+++    +  ++..+..++.+|..++..-. 
T Consensus        84 ~~ik~~ll~~l~~~~~~ir~~l~~~ia~ia~~d~p-~~Wp~ll~~L~~~l~s----~--~~~~~~~aL~~l~~i~~~~~~  156 (960)
T 1wa5_C           84 ELIKKEIVPLMISLPNNLQVQIGEAISSIADSDFP-DRWPTLLSDLASRLSN----D--DMVTNKGVLTVAHSIFKRWRP  156 (960)
T ss_dssp             HHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHST-TTCTTHHHHHHTTCCS----S--CTTHHHHHHHHHHHHHGGGTT
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCc-cchhHHHHHHHHHhCC----C--CHHHHHHHHHHHHHHHHHHHH
Confidence            334456777777788999999999999999 4333 2344488999999976    3  33355668999999987311 


Q ss_pred             ----chhHHHHH--hcCCHHHH-------HhcCCCCCH---------HHHHHHHHHHHHHhccC-hh-hHHHHHHcCCHH
Q 044999           87 ----GALATEIG--QSGVINSV-------LRLFPQSDD---------SFRTVLVKCLRVFVTFG-NE-NRVIVARNGGLE  142 (461)
Q Consensus        87 ----~~~~~~~~--~~~~l~~L-------~~ll~~~~~---------~~~~~~~~~l~~l~~~~-~~-~~~~~~~~g~i~  142 (461)
                          ++.+..+.  -....+.+       .+.+.....         .+...+++++..+...+ ++ ....+  ...++
T Consensus       157 ~~~~~~~~~~l~~~l~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~~~~~~~~~~~--~~~~~  234 (960)
T 1wa5_C          157 LFRSDELFLEIKLVLDVFTAPFLNLLKTVDEQITANENNKASLNILFDVLLVLIKLYYDFNCQDIPEFFEDNI--QVGMG  234 (960)
T ss_dssp             SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC--CHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHTH--HHHHH
T ss_pred             hhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHH--HHHHH
Confidence                11111110  01112222       223444321         12233555555544211 11 11111  11234


Q ss_pred             HHHHHhcCC------C---------hHHHHHHHHHHHHhh-CChHHHHHHHhcCCHHHHHHHHc-----CCCHHHHHHHH
Q 044999          143 IVIDLLNSC------N---------DGTRRYLLEILSALA-LLREVRRVLICLGGLRYLVEAVS-----FGSMVSRERAC  201 (461)
Q Consensus       143 ~L~~ll~~~------~---------~~~~~~a~~~L~~l~-~~~~~~~~~~~~~~l~~l~~~l~-----~~~~~~~~~a~  201 (461)
                      .+..++...      +         ..++..++.++..+. ..++.-.... ...++.+...+.     ..++.++..++
T Consensus       235 ~~~~~l~~~~p~~~~d~d~~~~~~~~~vk~~~~~~l~~l~~~~~~~f~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~al  313 (960)
T 1wa5_C          235 IFHKYLSYSNPLLEDPDETEHASVLIKVKSSIQELVQLYTTRYEDVFGPMI-NEFIQITWNLLTSISNQPKYDILVSKSL  313 (960)
T ss_dssp             HHHHHHSCCSCCCC------CCCHHHHHHHHHHHHHHHHHHHCHHHHHHHH-HHHHHHHHHHHHHCCSCTTSHHHHHHHH
T ss_pred             HHHHHHcCCCCcccCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcCCCcCcHHHHHHHH
Confidence            455555331      1         146778888888877 3333211111 124555555554     33678899999


Q ss_pred             HHHHHhhcCchhHHHHHhcCChHHHH-----Hhcc---------cCC--------------HHHHHHHHHHHHHHhcCcc
Q 044999          202 QAIGLLAVTGRARRLLVELGVIPGLV-----ELFH---------IGD--------------WTTKLVAGNTLGVVAAHVE  253 (461)
Q Consensus       202 ~~L~~l~~~~~~~~~~~~~~~i~~L~-----~ll~---------~~~--------------~~~~~~a~~~L~~l~~~~~  253 (461)
                      ..+..++.....+..+...+.++.++     ..+.         ..+              ...+..|..+|..++..-.
T Consensus       314 ~fl~~~~~~~~~~~~~~~~~~l~~li~~~i~~~m~~~~~d~e~w~~dp~e~i~~d~e~~d~~s~R~aa~~~L~~l~~~~~  393 (960)
T 1wa5_C          314 SFLTAVTRIPKYFEIFNNESAMNNITEQIILPNVTLREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTDFLKELKEKNE  393 (960)
T ss_dssp             HHHHHHHTSHHHHGGGCSHHHHHHHHHHTHHHHHSCCGGGTTTTTTCHHHHHHHHHHC----CHHHHHHHHHHHHHHHCH
T ss_pred             HHHHHHhCcHhHHHHHcCchHHHHHHHHHhHHhcCCCHHHHHHHhcCHHHHHHhccCcccccCcHHHHHHHHHHHHHHcc
Confidence            99999876654333321112233333     2221         011              1355667777777776522


Q ss_pred             chhhhhhcCCHHHHHHHhC------CCChhHHHHHHHHHHHhccCc---c----------cHHHH-HHHHHHHhccC---
Q 044999          254 YITPVAEAGAIPLYAELLQ------GPDSTGKEISEDVFCILAVSE---A----------NANAI-AEHLVRILREG---  310 (461)
Q Consensus       254 ~~~~~~~~g~i~~L~~ll~------~~~~~~~~~a~~~L~~l~~~~---~----------~~~~i-~~~l~~ll~~~---  310 (461)
                        ..+. ..+++.+...+.      +.++..++.|+.++..++...   .          .-..+ ...++..+.+.   
T Consensus       394 --~~v~-~~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p~l~~~~~~  470 (960)
T 1wa5_C          394 --VLVT-NIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIP  470 (960)
T ss_dssp             --HHHH-HHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHHCSSCS
T ss_pred             --hhHH-HHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHHHhcCCCCC
Confidence              1221 112333444444      457889999999999996431   1          11122 24556666666   


Q ss_pred             CHHHHHHHHHHHHHhhCCCCchhHHhhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcC
Q 044999          311 DNEANAAAADVLWDLAGYKHSVPVIRNSGAIPILVNLLRGENDEVREKVSGAIAQLSY  368 (461)
Q Consensus       311 ~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~  368 (461)
                      ++-+|..|+++++.++..- . ... -...++.++..+.+.++.|+..|+.+|.+++.
T Consensus       471 ~p~vr~~a~~~lg~~~~~~-~-~~~-l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~  525 (960)
T 1wa5_C          471 HIILRVDAIKYIYTFRNQL-T-KAQ-LIELMPILATFLQTDEYVVYTYAAITIEKILT  525 (960)
T ss_dssp             CHHHHHHHHHHHHHTGGGS-C-HHH-HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred             CceehHHHHHHHHHHHhhC-C-HHH-HHHHHHHHHHHhCCCChhHHHHHHHHHHHHHh
Confidence            8999999999999998642 1 122 22467788888888889999999999999987

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}

Probab=98.41  E-value=5e-06  Score=72.43  Aligned_cols=185  Identities=11%  Similarity=0.186  Sum_probs=134.8

Q ss_pred             HHHHHhcccCCHHHHHHHHHHHHH-HhcC-ccchhhhhh-cCCHHHHHHHh-CCCChhHHHHHHHHHHHhccC---cccH
Q 044999          224 PGLVELFHIGDWTTKLVAGNTLGV-VAAH-VEYITPVAE-AGAIPLYAELL-QGPDSTGKEISEDVFCILAVS---EANA  296 (461)
Q Consensus       224 ~~L~~ll~~~~~~~~~~a~~~L~~-l~~~-~~~~~~~~~-~g~i~~L~~ll-~~~~~~~~~~a~~~L~~l~~~---~~~~  296 (461)
                      +.+.+.+.+.++.-|..|+..|.. +... ++....-.+ ..++..|...+ ++.+..++..|+.++..++..   +...
T Consensus        19 ~~f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~   98 (249)
T 2qk1_A           19 KDFQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFS   98 (249)
T ss_dssp             TTHHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSC
T ss_pred             hhHHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhccccccc
Confidence            356677889999999999999999 8643 222100011 13477888888 788999999999999998642   2222


Q ss_pred             ----HHHHHHHHHHhccCCHHHHHHHHHHHHHhhCC-CCchhHHhhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcC-Ch
Q 044999          297 ----NAIAEHLVRILREGDNEANAAAADVLWDLAGY-KHSVPVIRNSGAIPILVNLLRGENDEVREKVSGAIAQLSY-NE  370 (461)
Q Consensus       297 ----~~i~~~l~~ll~~~~~~~~~~a~~~L~~l~~~-~~~~~~l~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~-~~  370 (461)
                          ..+.+.++..+.+..+.++..+..++-.++.. +.....-.-...++.|...+.++++.+|..++.+|..+.. .+
T Consensus        99 ~~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~  178 (249)
T 2qk1_A           99 KDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEK  178 (249)
T ss_dssp             HHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcC
Confidence                23339999999999999999999999988853 2111110011356778899999999999999999999987 33


Q ss_pred             hhHH---HHHhCCChHHHHHhccCCCHHHHHHHHHHHHHhc
Q 044999          371 ADRV---ALADAGAVPIMIELLHDESEELRDNAAESLINFS  408 (461)
Q Consensus       371 ~~~~---~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~  408 (461)
                      ....   .......+|.|.+++.+.++++|..|..++..++
T Consensus       179 ~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~  219 (249)
T 2qk1_A          179 DGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILI  219 (249)
T ss_dssp             SCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred             CcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence            2111   2222467999999999999999999999998876

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16

Probab=98.38  E-value=3.9e-08  Score=76.80  Aligned_cols=119  Identities=16%  Similarity=0.101  Sum_probs=83.9

Q ss_pred             CCHHHHHHHhcCCChHHHHHHHHHHHHhhCChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCchhHHHHH
Q 044999          139 GGLEIVIDLLNSCNDGTRRYLLEILSALALLREVRRVLICLGGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRARRLLV  218 (461)
Q Consensus       139 g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~  218 (461)
                      ..++.+..+|++.++.+|..|+..|..+...           .++.|+..+.++++.+|..++++|+++..         
T Consensus        12 ~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~~-----------~~~~L~~~L~d~~~~vR~~A~~aL~~~~~---------   71 (131)
T 1te4_A           12 SGLVPRGSHMADENKWVRRDVSTALSRMGDE-----------AFEPLLESLSNEDWRIRGAAAWIIGNFQD---------   71 (131)
T ss_dssp             ---------CCSSCCCSSSSCCSSTTSCSST-----------THHHHHHGGGCSCHHHHHHHHHHHGGGCS---------
T ss_pred             ccHHHHHHHhcCCCHHHHHHHHHHHHHhCch-----------HHHHHHHHHcCCCHHHHHHHHHHHHhcCC---------
Confidence            4567788888888888888888887765421           25778888888888899998888888742         


Q ss_pred             hcCChHHHHHhcccCCHHHHHHHHHHHHHHhcCccchhhhhhcCCHHHHHHHhCCCChhHHHHHHHHHHH
Q 044999          219 ELGVIPGLVELFHIGDWTTKLVAGNTLGVVAAHVEYITPVAEAGAIPLYAELLQGPDSTGKEISEDVFCI  288 (461)
Q Consensus       219 ~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~  288 (461)
                       ...++.|+..+.++++.++..++++|.++..          ...++.|..+++++++.++..+..+|.+
T Consensus        72 -~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~----------~~a~~~L~~~l~d~~~~vr~~A~~aL~~  130 (131)
T 1te4_A           72 -ERAVEPLIKLLEDDSGFVRSGAARSLEQIGG----------ERVRAAMEKLAETGTGFARKVAVNYLET  130 (131)
T ss_dssp             -HHHHHHHHHHHHHCCTHHHHHHHHHHHHHCS----------HHHHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred             -HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence             1247788888888888888888888888752          2347788888888888888888777654

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=98.33  E-value=1.9e-05  Score=80.98  Aligned_cols=291  Identities=10%  Similarity=0.090  Sum_probs=195.1

Q ss_pred             HHhcCCCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHhhCCh----HHHHHHH
Q 044999          102 VLRLFPQSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLNSCNDGTRRYLLEILSALALLR----EVRRVLI  177 (461)
Q Consensus       102 L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~----~~~~~~~  177 (461)
                      +++-++..+..-+..++..+..+...+...+  ....+.+..+.+.+.+....  +.|+.++..++...    ..-..++
T Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~~~~   94 (986)
T 2iw3_A           19 LFQKLSVATADNRHEIASEVASFLNGNIIEH--DVPEHFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEPYIV   94 (986)
T ss_dssp             HHHHHTTCCTTTHHHHHHHHHHHHTSSCSSS--SCCHHHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHHHHH
T ss_pred             HHhhccccchhHHHHHHHHHHHHHhcccccc--ccchhHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCcccchH
Confidence            3333444333335666767776654321111  11125667777777665444  89999999988322    2333343


Q ss_pred             hcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhcccC-CHHHHHHHHHHHHHHhcCccchh
Q 044999          178 CLGGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRARRLLVELGVIPGLVELFHIG-DWTTKLVAGNTLGVVAAHVEYIT  256 (461)
Q Consensus       178 ~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~-~~~~~~~a~~~L~~l~~~~~~~~  256 (461)
                        +.++.++....+....+|..|-.++..+...-.....   ..++|.|+..+.+. .+..+..|+.++..++...  ..
T Consensus        95 --~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~---~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~--~~  167 (986)
T 2iw3_A           95 --QLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAI---KALLPHLTNAIVETNKWQEKIAILAAFSAMVDAA--KD  167 (986)
T ss_dssp             --TTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGH---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHS--HH
T ss_pred             --HHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHH---HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHh--HH
Confidence              5789999999988889998888777766543332111   23588899988754 6899999999999998753  23


Q ss_pred             hhhh--cCCHHHHHHHhCCCChhHHHHHHHHHHHhccCcccH--HHHHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCch
Q 044999          257 PVAE--AGAIPLYAELLQGPDSTGKEISEDVFCILAVSEANA--NAIAEHLVRILREGDNEANAAAADVLWDLAGYKHSV  332 (461)
Q Consensus       257 ~~~~--~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~--~~i~~~l~~ll~~~~~~~~~~a~~~L~~l~~~~~~~  332 (461)
                      .+..  ..++|.+.+.+.+..+++...|..++..++..-+|+  ..++|.|++.+..++.  ...++..|..-+...+..
T Consensus       168 ~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~~~~~~~~~~~~~~p~~--~~~~~~~l~~~tfv~~v~  245 (986)
T 2iw3_A          168 QVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDIERFIPSLIQCIADPTE--VPETVHLLGATTFVAEVT  245 (986)
T ss_dssp             HHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTTGGGHHHHHHHHHCTTH--HHHHHHHHTTCCCCSCCC
T ss_pred             HHHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcchhhhHHHHHHHhcChhh--hHHHHHHhhcCeeEeeec
Confidence            3322  367999999999999999999999999886544443  3344999999987743  334455555444333221


Q ss_pred             hHHhhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcC---ChhhHHHHHhCCChHHHHHhcc-CCCHHHHHHHHHHHHHh
Q 044999          333 PVIRNSGAIPILVNLLRGENDEVREKVSGAIAQLSY---NEADRVALADAGAVPIMIELLH-DESEELRDNAAESLINF  407 (461)
Q Consensus       333 ~~l~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~---~~~~~~~~~~~~~i~~L~~ll~-~~~~~~~~~a~~~L~~l  407 (461)
                      .-.. .=.+|.|.+-|......++++++.++-|||+   +|.....|.. ..+|.|.+... -.+|++|..+..++..|
T Consensus       246 ~~~l-~~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~-~l~p~~~~~~~~~~~pe~r~~~~~a~~~l  322 (986)
T 2iw3_A          246 PATL-SIMVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQVIAPFLG-KLLPGLKSNFATIADPEAREVTLRALKTL  322 (986)
T ss_dssp             HHHH-HHHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHHHHHHHHT-TTHHHHHHHTTTCCSHHHHHHHHHHHHHH
T ss_pred             chhH-HHHHHHHHhhhccCcchhheeeEEEEcchhhhcCCHHHHhhhhh-hhhhHHHHHhhccCCHHHHHHHHHHHHHH
Confidence            1111 1246778888888888899999999999999   5544444443 46888888774 47999999999988888

>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}

Probab=98.24  E-value=7.8e-05  Score=65.87  Aligned_cols=147  Identities=15%  Similarity=0.031  Sum_probs=119.2

Q ss_pred             HHHHHhcCCChHHHHHHHHHHHH-hhCChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCchhHHHHH-hc
Q 044999          143 IVIDLLNSCNDGTRRYLLEILSA-LALLREVRRVLICLGGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRARRLLV-EL  220 (461)
Q Consensus       143 ~L~~ll~~~~~~~~~~a~~~L~~-l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~-~~  220 (461)
                      .+++-|.+++...+..++..|.. +..+.+....|+..+|+..|+......+...+..+++++.++..+......++ ..
T Consensus       122 ~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvvs~~  201 (339)
T 3dad_A          122 AILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGVVAHS  201 (339)
T ss_dssp             HHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHHHHCH
T ss_pred             HHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccchhCCH
Confidence            34555667777888999999998 55899999999999999999999999999999999999999999877765554 56


Q ss_pred             CChHHHHHhcccCCHHHHHHHHHHHHHHhcC-ccchhhhhhc----------CCHHHHHHHhC---CCChhHHHHHHHHH
Q 044999          221 GVIPGLVELFHIGDWTTKLVAGNTLGVVAAH-VEYITPVAEA----------GAIPLYAELLQ---GPDSTGKEISEDVF  286 (461)
Q Consensus       221 ~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~----------g~i~~L~~ll~---~~~~~~~~~a~~~L  286 (461)
                      .++..+..++.+.+..+...|+..|..++.. +.+...+.+.          .....++.+|+   +.+.+++.++...+
T Consensus       202 ~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~amtLI  281 (339)
T 3dad_A          202 DTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTVTLI  281 (339)
T ss_dssp             HHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHHHHH
Confidence            7899999999988899999999999999877 3344333221          13678999997   66889999888776


Q ss_pred             HHh
Q 044999          287 CIL  289 (461)
Q Consensus       287 ~~l  289 (461)
                      -.+
T Consensus       282 N~l  284 (339)
T 3dad_A          282 NKT  284 (339)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            655

>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}

Probab=98.15  E-value=0.00012  Score=64.65  Aligned_cols=176  Identities=13%  Similarity=0.084  Sum_probs=130.9

Q ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHH-hhcCchhHHHHHhcCChHHHHHhcccCCHHHHHHHHHHHHHHhcCccchhhhhh
Q 044999          182 LRYLVEAVSFGSMVSRERACQAIGL-LAVTGRARRLLVELGVIPGLVELFHIGDWTTKLVAGNTLGVVAAHVEYITPVAE  260 (461)
Q Consensus       182 l~~l~~~l~~~~~~~~~~a~~~L~~-l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~  260 (461)
                      ...+++.|.+.+...+..++.-|.. +....+....|++.+++..|+.+....+...+..++.++.++..+.+....++.
T Consensus       120 a~~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvvs  199 (339)
T 3dad_A          120 VNAILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGVVA  199 (339)
T ss_dssp             HHHHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHHHH
T ss_pred             HHHHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccchhC
Confidence            4456677777888888899999988 555566688999999999999999999999999999999999998666655654


Q ss_pred             -cCCHHHHHHHhCCCChhHHHHHHHHHHHhccCcc-cHHHHH---------------HHHHHHhc---cCCHHHHHHHHH
Q 044999          261 -AGAIPLYAELLQGPDSTGKEISEDVFCILAVSEA-NANAIA---------------EHLVRILR---EGDNEANAAAAD  320 (461)
Q Consensus       261 -~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~-~~~~i~---------------~~l~~ll~---~~~~~~~~~a~~  320 (461)
                       ..+|..+..++.+.+..+.+.|+..|..++...+ +...+.               +.++.+|.   +.+.+++.+|+.
T Consensus       200 ~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~amt  279 (339)
T 3dad_A          200 HSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTVT  279 (339)
T ss_dssp             CHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHHH
T ss_pred             CHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHHH
Confidence             4678999999998889999999999999965554 322222               68889997   678999999998


Q ss_pred             HHHHhhCC-CCc--hhHH----hhcCCHHHHHHhhcCC--CHHHHH
Q 044999          321 VLWDLAGY-KHS--VPVI----RNSGAIPILVNLLRGE--NDEVRE  357 (461)
Q Consensus       321 ~L~~l~~~-~~~--~~~l----~~~g~i~~L~~ll~~~--~~~v~~  357 (461)
                      .|..+-.. ++.  ...+    -+.|.-..+.+.+...  ++++++
T Consensus       280 LIN~lL~~apd~d~~~di~d~Le~~gi~~~i~r~l~~~~~~~~l~~  325 (339)
T 3dad_A          280 LINKTLAALPDQDSFYDVTDALEQQGMEALVQRHLGTAGTDVDLRT  325 (339)
T ss_dssp             HHHHHHHHCSSHHHHHHHHHHHHHTTHHHHHHHHHSCTTSCHHHHH
T ss_pred             HHHHHHhcCCChhHHHHHHHHHHHccHHHHHHHHHhccCCCHHHHH
Confidence            88877643 321  1122    2334334455556543  445444

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=98.10  E-value=0.00042  Score=71.24  Aligned_cols=292  Identities=13%  Similarity=0.116  Sum_probs=188.7

Q ss_pred             HHHHhcCCChHHHHHHHHHHHHhhCChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCchh----HHHHHh
Q 044999          144 VIDLLNSCNDGTRRYLLEILSALALLREVRRVLICLGGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRA----RRLLVE  219 (461)
Q Consensus       144 L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~----~~~~~~  219 (461)
                      +++-+...+..-+..+...+.++....... .....+.+..+.+.+.+....  +.|+.++..++.....    ...++ 
T Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~~~~-   94 (986)
T 2iw3_A           19 LFQKLSVATADNRHEIASEVASFLNGNIIE-HDVPEHFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEPYIV-   94 (986)
T ss_dssp             HHHHHTTCCTTTHHHHHHHHHHHHTSSCSS-SSCCHHHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHHHHH-
T ss_pred             HHhhccccchhHHHHHHHHHHHHHhccccc-cccchhHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCcccchH-
Confidence            444444433444455666666654321000 111125677777777766444  8999999999855432    22333 


Q ss_pred             cCChHHHHHhcccCCHHHHHHHHHHHHHHhcC-ccchhhhhhcCCHHHHHHHhCCC-ChhHHHHHHHHHHHhccCcccH-
Q 044999          220 LGVIPGLVELFHIGDWTTKLVAGNTLGVVAAH-VEYITPVAEAGAIPLYAELLQGP-DSTGKEISEDVFCILAVSEANA-  296 (461)
Q Consensus       220 ~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~g~i~~L~~ll~~~-~~~~~~~a~~~L~~l~~~~~~~-  296 (461)
                       +.++.++..+.+....++..|-.++..+... +....    ..++|.|+..+.+. .|..+..|+.++..|+...... 
T Consensus        95 -~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~----~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~~  169 (986)
T 2iw3_A           95 -QLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAI----KALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQV  169 (986)
T ss_dssp             -TTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGH----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHHH
T ss_pred             -HHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHH----HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHHH
Confidence             5789999999888899999888888777655 22222    23489999988755 6999999999999997543211 


Q ss_pred             ----HHHHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCchhHHhhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCChhh
Q 044999          297 ----NAIAEHLVRILREGDNEANAAAADVLWDLAGYKHSVPVIRNSGAIPILVNLLRGENDEVREKVSGAIAQLSYNEAD  372 (461)
Q Consensus       297 ----~~i~~~l~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~  372 (461)
                          ..++|.+.+.+.+..+++...|..++..+|..-.|++.   ...+|.|++.+.+++.  ...++..|+.-+.-.+.
T Consensus       170 ~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~---~~~~~~~~~~~~~p~~--~~~~~~~l~~~tfv~~v  244 (986)
T 2iw3_A          170 ALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDI---ERFIPSLIQCIADPTE--VPETVHLLGATTFVAEV  244 (986)
T ss_dssp             HHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTT---GGGHHHHHHHHHCTTH--HHHHHHHHTTCCCCSCC
T ss_pred             HHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcch---hhhHHHHHHHhcChhh--hHHHHHHhhcCeeEeee
Confidence                11228888888899999999999999999975444433   3468999999998743  33445555554442221


Q ss_pred             HHHHHhCCChHHHHHhccCCCHHHHHHHHHHHHHhcCCCcchHHHHHhhCCchHHhHHHHHHHhhhc-hhHHHHHHHHHh
Q 044999          373 RVALADAGAVPIMIELLHDESEELRDNAAESLINFSEDPLQHERISEAIGIPSFQSMQSRLTRIRAS-DDLMARSMRRMS  451 (461)
Q Consensus       373 ~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~~~~  451 (461)
                      ...... =.+|.|.+-|+.....+++.++.++-|++.-=++.....     +.+..++-.+.+..+. .++.+|+.+..+
T Consensus       245 ~~~~l~-~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~~~-----~f~~~l~p~~~~~~~~~~~pe~r~~~~~a  318 (986)
T 2iw3_A          245 TPATLS-IMVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQVIA-----PFLGKLLPGLKSNFATIADPEAREVTLRA  318 (986)
T ss_dssp             CHHHHH-HHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHHHHH-----HHHTTTHHHHHHHTTTCCSHHHHHHHHHH
T ss_pred             cchhHH-HHHHHHHhhhccCcchhheeeEEEEcchhhhcCCHHHHh-----hhhhhhhhHHHHHhhccCCHHHHHHHHHH
Confidence            111111 137888888888899999999999999986544443333     2333444444443343 467788888888


Q ss_pred             Hhhh
Q 044999          452 IEQL  455 (461)
Q Consensus       452 ~~~~  455 (461)
                      ++.+
T Consensus       319 ~~~l  322 (986)
T 2iw3_A          319 LKTL  322 (986)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            7765

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}

Probab=98.02  E-value=0.00059  Score=72.08  Aligned_cols=383  Identities=11%  Similarity=0.039  Sum_probs=200.0

Q ss_pred             cHHHhHHHHHHHhhc---CCHHHHHHHHHHHHhhc-CCCchhHHHhhHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHH
Q 044999            7 NWEEAFNRFEQAVVS---GSEALQVKALTKLARVS-KFAPQDILAATIPILARLLGENNFSGNLTRSIQQAAAYCLKQIA   82 (461)
Q Consensus         7 ~~~~~~~~l~~ll~~---~~~~~~~~a~~~l~~la-~~~~~~~l~~~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~   82 (461)
                      ..+.....+++.+.+   +...+|.+.+.++..++ ..-+  .+.+.++.++..++++..+.-+++.....+...|..++
T Consensus        79 ~~~~ir~~ll~~l~~~~~~~~~vr~kl~~~la~i~~~~~p--~Wp~~l~~l~~~~~~~~~~~~~~~~~~~~~l~iL~~l~  156 (971)
T 2x1g_F           79 NREELKQKILESIVRFAGGPKIVLNRLCISLGAYIVHMLG--EWPGAIEEVINTFQNQRMPNVSADVQLWIMLEVLTAIP  156 (971)
T ss_dssp             GHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTC--C------HHHHHHHHTC----CHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHccc--cccHHHHHHHHHHhccccccCCCHHHHHHHHHHHHHhH
Confidence            445555666666654   36889999999999999 4333  45557888888887510011113445555888888777


Q ss_pred             hcC---Cc-h----hHHHHHhcCCHHHHH----hcCCC-CC-------HHHHHHHHHHHHHHhc--cChhhHHHHHHcCC
Q 044999           83 SQA---DG-A----LATEIGQSGVINSVL----RLFPQ-SD-------DSFRTVLVKCLRVFVT--FGNENRVIVARNGG  140 (461)
Q Consensus        83 ~~~---~~-~----~~~~~~~~~~l~~L~----~ll~~-~~-------~~~~~~~~~~l~~l~~--~~~~~~~~~~~~g~  140 (461)
                      ++-   .. .    .+..+..  .++.++    +.+.. .+       ..++..+..++.....  .-+..    .....
T Consensus       157 EEi~~~~~~~~r~~~~~~l~~--~~~~vl~ll~~~l~~~~~~~~~~~~~~~~~~al~~l~~~~~~~~ip~~----~~~~l  230 (971)
T 2x1g_F          157 EEAQVIHTSVKRVVLRAEIAK--RVQLVIHTVERYLKLQMNRVWDAEAYSNMNRAVKCVGTWIKNIGYTIE----GCVTI  230 (971)
T ss_dssp             HHHHHCCCSSCHHHHHHHHHT--THHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHSCCCGG----GHHHH
T ss_pred             HHHhccCcHHHHHHHHHHHHH--HHHHHHHHHHHHHhcccCCCCCccchhHHHHHHHHHHHHHhhCCcCcc----ccccH
Confidence            510   00 0    1122211  233333    33321 11       1567778888875443  12222    22334


Q ss_pred             HHHHHHHhc----------------CCChHHHHHHHHHHHHhhCChH--HHHHHHhcCCHHHHHH-------HHcCCC--
Q 044999          141 LEIVIDLLN----------------SCNDGTRRYLLEILSALALLRE--VRRVLICLGGLRYLVE-------AVSFGS--  193 (461)
Q Consensus       141 i~~L~~ll~----------------~~~~~~~~~a~~~L~~l~~~~~--~~~~~~~~~~l~~l~~-------~l~~~~--  193 (461)
                      ++.++. +.                ..++.++..|+.++..+...++  .....+. ..++.++.       .+..++  
T Consensus       231 l~~l~~-L~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~d~~  308 (971)
T 2x1g_F          231 TAVLLE-VVHKCYWPCIHAGDGCMTADENELAESCLKTMVNIIIQPDCHNYPKTAF-VLIKMFLDSLSEITKTEWKREND  308 (971)
T ss_dssp             HHHHHH-HHHHHHSSSCC---CCCCHHHHHHHHHHHHHHHHHHHCSGGGGCHHHHH-HHHHHHHHHHHHHHHHHSSSSCS
T ss_pred             HHHHHh-hhhhhccccccccccccCcCCcHHHHHHHHHHHHHHcCccccccHHHHH-HHHHHHHHhHHHHHHHHhccccc
Confidence            555555 31                1356889999999999884322  1111111 12223322       123334  


Q ss_pred             -HHHHHHHHHHHHHhhcCchh--H-----------HHHHhcCChHHHHHhccc-----CCHHHHHHHHHHHHHHhcC-c-
Q 044999          194 -MVSRERACQAIGLLAVTGRA--R-----------RLLVELGVIPGLVELFHI-----GDWTTKLVAGNTLGVVAAH-V-  252 (461)
Q Consensus       194 -~~~~~~a~~~L~~l~~~~~~--~-----------~~~~~~~~i~~L~~ll~~-----~~~~~~~~a~~~L~~l~~~-~-  252 (461)
                       .+.....++.+..+......  .           ..+  ...++.++.+...     .++++...++..+..++.. . 
T Consensus       309 ~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~  386 (971)
T 2x1g_F          309 NEDIIVHIYMLFVSSVERHSTLLLSGITSADPELSILV--HRIVQEILHCTDKPGIYPVEESCSTMALAFWYMLQDEVFA  386 (971)
T ss_dssp             CSHHHHHHHHHHHHHHHHTHHHHHHHHHTCCHHHHHHH--HHHHHHHHHHHHCSSCTTTTCTTHHHHHHHHHHHHHHHHC
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccHHH--HHHHHHHHHHHcCCCCCCcchhhhHHHHHHHHHHHHHHHh
Confidence             26666667777766543221  1           111  1245555555533     4677888888888777641 0 


Q ss_pred             -------cchhhhhh---cCCHHHHHHHhCCCCh---------------hHHHHHHHHHHHhccCcc--cHHHHHHHHHH
Q 044999          253 -------EYITPVAE---AGAIPLYAELLQGPDS---------------TGKEISEDVFCILAVSEA--NANAIAEHLVR  305 (461)
Q Consensus       253 -------~~~~~~~~---~g~i~~L~~ll~~~~~---------------~~~~~a~~~L~~l~~~~~--~~~~i~~~l~~  305 (461)
                             ........   ...++.++..+..++.               ..|..+..+|..++....  .-..+.+.+..
T Consensus       387 ~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~p~~~~~~~~d~~e~~~f~~~R~~~~~~l~~~~~~~~~~~l~~~~~~l~~  466 (971)
T 2x1g_F          387 MSNDEQKHKCWEYIKPLYAHLTRILVRKSEQPDEKSLAKWSSDDLECFRCYRQDISDTFMYCYDVLNDYILEILAAMLDE  466 (971)
T ss_dssp             -------CHHHHHHHHHHHHHHHHHHHHTSCCCTTTTSCSCHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred             cccccchHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccCHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence                   11111111   1334455555532211               245666667777654332  11222255555


Q ss_pred             Hhcc-----CCHHHHHHHHHHHHHhhCCCCchhHHhhcCCHHHHHHhh---c--CCCHHHHHHHHHHHHHhcC-ChhhHH
Q 044999          306 ILRE-----GDNEANAAAADVLWDLAGYKHSVPVIRNSGAIPILVNLL---R--GENDEVREKVSGAIAQLSY-NEADRV  374 (461)
Q Consensus       306 ll~~-----~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~ll---~--~~~~~v~~~a~~~L~~l~~-~~~~~~  374 (461)
                      .+.+     .++..++.++.+++.++.......    ...++.++.++   .  +.++.++..++++++.++. -..+..
T Consensus       467 ~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~~----~~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~  542 (971)
T 2x1g_F          467 AIADLQRHPTHWTKLEACIYSFQSVAEHFGGEE----KRQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPA  542 (971)
T ss_dssp             HHHHHHHCTTCCHHHHHHHHHHHHTTTC----------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----
T ss_pred             HHHhccCCCCcHHHHHHHHHHHHHHHhhcChhh----hHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHH
Confidence            5543     578899999999999986522111    12233333332   2  3588999999999999987 111111


Q ss_pred             HHHhCCChHHHHHhccCCCHHHHHHHHHHHHHhcCC
Q 044999          375 ALADAGAVPIMIELLHDESEELRDNAAESLINFSED  410 (461)
Q Consensus       375 ~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~  410 (461)
                      .+.  ..++.|+..+ +  +.++..|+.++.+++.+
T Consensus       543 ~l~--~vl~~l~~~l-~--~~v~~~A~~al~~l~~~  573 (971)
T 2x1g_F          543 YIP--PAINLLVRGL-N--SSMSAQATLGLKELCRD  573 (971)
T ss_dssp             CHH--HHHHHHHHHH-H--SSCHHHHHHHHHHHHHH
T ss_pred             HHH--HHHHHHHHHh-C--hHHHHHHHHHHHHHHHH
Confidence            111  1355566666 2  77899999999999954

>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B

Probab=97.97  E-value=0.01  Score=63.11  Aligned_cols=371  Identities=13%  Similarity=0.116  Sum_probs=197.6

Q ss_pred             HHHHHHHHHHHHhhc-CCCchhHHHhhHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHhcCC---c----hh-----H
Q 044999           24 EALQVKALTKLARVS-KFAPQDILAATIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQAD---G----AL-----A   90 (461)
Q Consensus        24 ~~~~~~a~~~l~~la-~~~~~~~l~~~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~---~----~~-----~   90 (461)
                      ..++.+.+.++..++ .+-+ ..+.+.++.+++.++.    +   +.....+..+|..+++.-.   .    ..     +
T Consensus       114 ~~i~~kl~~~ia~Ia~~~~p-~~Wp~ll~~L~~~~~~----~---~~~~~~~l~~L~~l~eev~~~~~~~~~~~r~~~lk  185 (1049)
T 3m1i_C          114 KNLINKSDLTLVQILKQEWP-QNWPEFIPELIGSSSS----S---VNVCENNMIVLKLLSEEVFDFSAEQMTQAKALHLK  185 (1049)
T ss_dssp             HHHHHHHHHHHHHHHHHHTT-TTCTTHHHHHHHHHTT----C---HHHHHHHHHHHHHHHHHHHTSCTTTSCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhCc-ccchHHHHHHHHHHcc----C---hHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHH
Confidence            678888888899888 3222 2233477888888753    2   2234446677777764200   0    00     1


Q ss_pred             HHHHhc--CCHHHHHhcCC-CCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHH-HhcCCChHHHHHHHHHHHHh
Q 044999           91 TEIGQS--GVINSVLRLFP-QSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVID-LLNSCNDGTRRYLLEILSAL  166 (461)
Q Consensus        91 ~~~~~~--~~l~~L~~ll~-~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~-ll~~~~~~~~~~a~~~L~~l  166 (461)
                      ..+...  ..++.+.+.+. ..++.++..+..++.....--+  -..+.+...++.+++ ++.  ++.++..|+.+|..+
T Consensus       186 ~~l~~~~~~i~~~~~~~l~~~~~~~~~~~aL~~l~~~l~wi~--~~~~~~~~ll~~l~~~~l~--~~~~~~~a~~~L~~i  261 (1049)
T 3m1i_C          186 NSMSKEFEQIFKLCFQVLEQGSSSSLIVATLESLLRYLHWIP--YRYIYETNILELLSTKFMT--SPDTRAITLKCLTEV  261 (1049)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSC--THHHHSSSHHHHHHTHHHH--SHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCC--HHHHhhhhHHHHHHHHhCC--CHhHHHHHHHHHHHH
Confidence            222221  11222333343 3456778888888876654222  122445666776663 442  788999999999988


Q ss_pred             hCC---hH---HHHHHHh--cCCHHHHHH-----------HH---cCCCHHHHHHHHHHHHHhhcC-------ch-hHHH
Q 044999          167 ALL---RE---VRRVLIC--LGGLRYLVE-----------AV---SFGSMVSRERACQAIGLLAVT-------GR-ARRL  216 (461)
Q Consensus       167 ~~~---~~---~~~~~~~--~~~l~~l~~-----------~l---~~~~~~~~~~a~~~L~~l~~~-------~~-~~~~  216 (461)
                      ...   +.   ....+..  .+.+..+..           ..   .+.+.+.....+..+..+...       .+ ....
T Consensus       262 ~~~~~~~~~~~~~~~~~~l~~~~l~~l~~si~p~~~~l~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  341 (1049)
T 3m1i_C          262 SNLKIPQDNDLIKRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLREL  341 (1049)
T ss_dssp             HHCCCCTTCHHHHHHHHHHHHHHHHHHHHHTCCTTSCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHH
T ss_pred             HhCCCCcchhhHHHHHHHHHHHHHHHHHHhhCCCcccHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHcCChhhHHH
Confidence            832   21   1111111  112222211           11   122334444445544433221       11 1222


Q ss_pred             HHhcCChHHHHHhcccCCHHHHHHHHHHHHHHhc----Cccchhhhhh--cCCHHHHHHHhCCCC--------h------
Q 044999          217 LVELGVIPGLVELFHIGDWTTKLVAGNTLGVVAA----HVEYITPVAE--AGAIPLYAELLQGPD--------S------  276 (461)
Q Consensus       217 ~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~----~~~~~~~~~~--~g~i~~L~~ll~~~~--------~------  276 (461)
                      +  ..+++.++.....++.++...++..+..++.    .+..+..+..  ...++.++..+..++        +      
T Consensus       342 l--~~~l~~ll~~~~~~d~~v~~~~lefw~~l~~~l~~~~~~~~~~~~~l~~Lv~~ll~~m~~~ed~~~~~dd~~e~~r~  419 (1049)
T 3m1i_C          342 L--LNAHQYLIQLSKIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVRE  419 (1049)
T ss_dssp             H--HHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHSTTCGGGGHHHHHHHHHHHHHTCCCCTTCCEEECTTSCEEEC
T ss_pred             H--HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhcCCCcceeeeeCCCCcchHh
Confidence            2  2356666666667788888888888877776    3222222211  123444444443210        0      


Q ss_pred             --------hHHHHHHHHHHHhccCccc-H-HHHHHHHHHHhcc--CCHHHHHHHHHHHHHhhCCCCch-hHHhhcCCHHH
Q 044999          277 --------TGKEISEDVFCILAVSEAN-A-NAIAEHLVRILRE--GDNEANAAAADVLWDLAGYKHSV-PVIRNSGAIPI  343 (461)
Q Consensus       277 --------~~~~~a~~~L~~l~~~~~~-~-~~i~~~l~~ll~~--~~~~~~~~a~~~L~~l~~~~~~~-~~l~~~g~i~~  343 (461)
                              ..+..+..+|..++..... . ..+.+.+-+.+.+  .++..++.++.+++.++..-... +.-.-..+++.
T Consensus       420 ~~~d~d~~~~~~~~~~~L~~l~~~~~~~~l~~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~  499 (1049)
T 3m1i_C          420 FVKESDTIQLYKSEREVLVYLTHLNVIDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKD  499 (1049)
T ss_dssp             SSCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHH
T ss_pred             hhccchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHH
Confidence                    2244455666666532211 1 1111555555643  57899999999999998542211 11111224444


Q ss_pred             HHHhhcC-----CCHHHHHHHHHHHHHhcC-ChhhHHHHHhCCChHHHHHhccCCCHHHHHHHHHHHHHhcCC
Q 044999          344 LVNLLRG-----ENDEVREKVSGAIAQLSY-NEADRVALADAGAVPIMIELLHDESEELRDNAAESLINFSED  410 (461)
Q Consensus       344 L~~ll~~-----~~~~v~~~a~~~L~~l~~-~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~  410 (461)
                      |..+...     +++.++..++++++..+. -..+...+.  ..++.++..+.+.++.++..|+.++.+++.+
T Consensus       500 l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~~~~l~--~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~  570 (1049)
T 3m1i_C          500 LLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLR--TVILKLFEFMHETHEGVQDMACDTFIKIVQK  570 (1049)
T ss_dssp             HHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHH--HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhhhccccchHHHHHHHHHHHHHHHHHHHhHHHHHH--HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence            5444321     234455568888888876 222222222  2467777788888999999999999999975

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}

Probab=97.93  E-value=0.0028  Score=66.96  Aligned_cols=384  Identities=10%  Similarity=0.014  Sum_probs=199.8

Q ss_pred             cHHHhHHHHHHHhhcC------CHHHHHHHHHHHHhhc-C-----CCc-h----hHHHh----hHHHHHHhhccCCCCCC
Q 044999            7 NWEEAFNRFEQAVVSG------SEALQVKALTKLARVS-K-----FAP-Q----DILAA----TIPILARLLGENNFSGN   65 (461)
Q Consensus         7 ~~~~~~~~l~~ll~~~------~~~~~~~a~~~l~~la-~-----~~~-~----~~l~~----~i~~l~~~l~~~~~~~~   65 (461)
                      .|.+.++.++..++++      ++..+..+...|..++ .     ... +    +.+..    +++.+.+.+....-++.
T Consensus       119 ~Wp~~l~~l~~~~~~~~~~~~~~~~~~~~~l~iL~~l~EEi~~~~~~~~r~~~~~~l~~~~~~vl~ll~~~l~~~~~~~~  198 (971)
T 2x1g_F          119 EWPGAIEEVINTFQNQRMPNVSADVQLWIMLEVLTAIPEEAQVIHTSVKRVVLRAEIAKRVQLVIHTVERYLKLQMNRVW  198 (971)
T ss_dssp             C------HHHHHHHHTC----CHHHHHHHHHHHHHHHHHHHHHCCCSSCHHHHHHHHHTTHHHHHHHHHHHHHHHTTSCC
T ss_pred             cccHHHHHHHHHHhccccccCCCHHHHHHHHHHHHHhHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCC
Confidence            8999999999999886      5667777777777666 1     111 1    22332    44444455543100000


Q ss_pred             C--cHHHHHHHHHHHHHHHh--cCCchhHHHHHhcCCHHHHHhcC----------------CCCCHHHHHHHHHHHHHHh
Q 044999           66 L--TRSIQQAAAYCLKQIAS--QADGALATEIGQSGVINSVLRLF----------------PQSDDSFRTVLVKCLRVFV  125 (461)
Q Consensus        66 ~--~~~~~~~a~~~L~~l~~--~~~~~~~~~~~~~~~l~~L~~ll----------------~~~~~~~~~~~~~~l~~l~  125 (461)
                      +  +......++.++.....  +-+..     .....++.+.. +                ...++..+..++.++..+.
T Consensus       199 ~~~~~~~~~~al~~l~~~~~~~~ip~~-----~~~~ll~~l~~-L~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~  272 (971)
T 2x1g_F          199 DAEAYSNMNRAVKCVGTWIKNIGYTIE-----GCVTITAVLLE-VVHKCYWPCIHAGDGCMTADENELAESCLKTMVNII  272 (971)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHSCCCGG-----GHHHHHHHHHH-HHHHHHSSSCC---CCCCHHHHHHHHHHHHHHHHHH
T ss_pred             CccchhHHHHHHHHHHHHHhhCCcCcc-----ccccHHHHHHh-hhhhhccccccccccccCcCCcHHHHHHHHHHHHHH
Confidence            0  01456667777776554  21221     22334555555 3                1145677888999998777


Q ss_pred             ccCh--hhHHHHHHcCCHHHHHHH-------hcCCCh---HHHHHHHHHHHHhhC-ChHH-H-----------HHHHhcC
Q 044999          126 TFGN--ENRVIVARNGGLEIVIDL-------LNSCND---GTRRYLLEILSALAL-LREV-R-----------RVLICLG  180 (461)
Q Consensus       126 ~~~~--~~~~~~~~~g~i~~L~~l-------l~~~~~---~~~~~a~~~L~~l~~-~~~~-~-----------~~~~~~~  180 (461)
                      ...+  +....+..  .++.++.+       +...+.   +.....++.+..+.. .... .           ..+  ..
T Consensus       273 ~~~~~~~~~~~~~~--l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~  348 (971)
T 2x1g_F          273 IQPDCHNYPKTAFV--LIKMFLDSLSEITKTEWKRENDNEDIIVHIYMLFVSSVERHSTLLLSGITSADPELSILV--HR  348 (971)
T ss_dssp             HCSGGGGCHHHHHH--HHHHHHHHHHHHHHHHSSSSCSCSHHHHHHHHHHHHHHHHTHHHHHHHHHTCCHHHHHHH--HH
T ss_pred             cCccccccHHHHHH--HHHHHHHhHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccHHH--HH
Confidence            5322  11112211  22333321       233342   666667777776662 2211 1           111  13


Q ss_pred             CHHHHHHHHcC-----CCHHHHHHHHHHHHHhhcCc---------hh-HHHHHh--cCChHHHHHhcccCC--------H
Q 044999          181 GLRYLVEAVSF-----GSMVSRERACQAIGLLAVTG---------RA-RRLLVE--LGVIPGLVELFHIGD--------W  235 (461)
Q Consensus       181 ~l~~l~~~l~~-----~~~~~~~~a~~~L~~l~~~~---------~~-~~~~~~--~~~i~~L~~ll~~~~--------~  235 (461)
                      .++.++.+..+     .++++...++.....++...         +. ...+..  ...++.++..+..++        +
T Consensus       349 ~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~p~~~~~~~~d~  428 (971)
T 2x1g_F          349 IVQEILHCTDKPGIYPVEESCSTMALAFWYMLQDEVFAMSNDEQKHKCWEYIKPLYAHLTRILVRKSEQPDEKSLAKWSS  428 (971)
T ss_dssp             HHHHHHHHHHCSSCTTTTCTTHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHHHHHTSCCCTTTTSCSCH
T ss_pred             HHHHHHHHHcCCCCCCcchhhhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccCH
Confidence            45666666544     36678888888887775411         11 111111  134455555543221        1


Q ss_pred             -------HHHHHHHHHHHHHhcCccchhhhhhcCCHHHHHHHhCC-----CChhHHHHHHHHHHHhccCcccHH-HHHHH
Q 044999          236 -------TTKLVAGNTLGVVAAHVEYITPVAEAGAIPLYAELLQG-----PDSTGKEISEDVFCILAVSEANAN-AIAEH  302 (461)
Q Consensus       236 -------~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~ll~~-----~~~~~~~~a~~~L~~l~~~~~~~~-~i~~~  302 (461)
                             ..|..+..+|..++..-.  ..+.. -+++.+-..+..     .++..++.++.++..++....... ...+.
T Consensus       429 ~e~~~f~~~R~~~~~~l~~~~~~~~--~~~l~-~~~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~~~~~l~~  505 (971)
T 2x1g_F          429 DDLECFRCYRQDISDTFMYCYDVLN--DYILE-ILAAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGEEKRQIPR  505 (971)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTCT--THHHH-HHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC------CHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHh--HHHHH-HHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcChhhhHHHHH
Confidence                   345566667777665421  11111 112233333332     578899999999999975433211 11233


Q ss_pred             HHHH---hc--cCCHHHHHHHHHHHHHhhCC-CCchhHHhhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCChhhHHHH
Q 044999          303 LVRI---LR--EGDNEANAAAADVLWDLAGY-KHSVPVIRNSGAIPILVNLLRGENDEVREKVSGAIAQLSYNEADRVAL  376 (461)
Q Consensus       303 l~~l---l~--~~~~~~~~~a~~~L~~l~~~-~~~~~~l~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~  376 (461)
                      ++.+   +.  +.++.++..++++++.++.. ....+.+  ..+++.|+..+ +  +.++..|+.++.+++.  ..+..+
T Consensus       506 l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l--~~vl~~l~~~l-~--~~v~~~A~~al~~l~~--~~~~~l  578 (971)
T 2x1g_F          506 LMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAYI--PPAINLLVRGL-N--SSMSAQATLGLKELCR--DCQLQL  578 (971)
T ss_dssp             HHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----CH--HHHHHHHHHHH-H--SSCHHHHHHHHHHHHH--HCHHHH
T ss_pred             HHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHHH--HHHHHHHHHHh-C--hHHHHHHHHHHHHHHH--HHHHhc
Confidence            3332   23  34899999999999999843 1111111  12456666666 3  6789999999999996  233333


Q ss_pred             Hh--CCChHHHHHhccC--CCHHHHHHHHHHHHHhcCC
Q 044999          377 AD--AGAVPIMIELLHD--ESEELRDNAAESLINFSED  410 (461)
Q Consensus       377 ~~--~~~i~~L~~ll~~--~~~~~~~~a~~~L~~l~~~  410 (461)
                      ..  ...+..+..++..  -+...+..+..++..++..
T Consensus       579 ~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~  616 (971)
T 2x1g_F          579 KPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSL  616 (971)
T ss_dssp             HHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHT
T ss_pred             cccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHh
Confidence            32  1244555566655  3578888888888888653

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B

Probab=97.86  E-value=0.017  Score=60.85  Aligned_cols=387  Identities=15%  Similarity=0.123  Sum_probs=202.4

Q ss_pred             cHHHhHHHHHHHhhc---CCHHHHHHHHHHHHhhc-CCCchhHHHhhHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHH
Q 044999            7 NWEEAFNRFEQAVVS---GSEALQVKALTKLARVS-KFAPQDILAATIPILARLLGENNFSGNLTRSIQQAAAYCLKQIA   82 (461)
Q Consensus         7 ~~~~~~~~l~~ll~~---~~~~~~~~a~~~l~~la-~~~~~~~l~~~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~   82 (461)
                      ..+.....++..+.+   ....++.+.+.++..++ .+-+. .+.+.++.++..+++ ..++.+++.....+...|..++
T Consensus        97 ~~~~ir~~ll~~l~~~~~~~~~ir~kl~~~la~i~~~~~p~-~Wp~~l~~l~~~~~~-~~~~~~~~~~~~~~l~iL~~l~  174 (963)
T 2x19_B           97 QYESLKAQLFTQITRFASGSKIVLTRLCVALASLALSMMPD-AWPCAVADMVRLFQA-EDSPVDGQGRCLALLELLTVLP  174 (963)
T ss_dssp             GHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHTTT-TSTTHHHHHHHHHCC-------CHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhCcc-ccchHHHHHHHHHhh-hccCCCcHHHHHHHHHHHHhCH
Confidence            344455566666655   46889999999999999 32221 133477888887763 0000113334555778888887


Q ss_pred             hcC-Cch----hHHH----HHhc--CCHHHHHhcCCCC--CHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhc
Q 044999           83 SQA-DGA----LATE----IGQS--GVINSVLRLFPQS--DDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLN  149 (461)
Q Consensus        83 ~~~-~~~----~~~~----~~~~--~~l~~L~~ll~~~--~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll~  149 (461)
                      ++- +..    .+..    +...  ..++.+.+.+...  +..+...+..++......+...   ......++.+++.+.
T Consensus       175 ee~~~~~~~~~~r~~~~~~l~~~~~~i~~ll~~~l~~~~~~~~~~~~~l~~l~~wi~~~~~~---~~~~~ll~~l~~~l~  251 (963)
T 2x19_B          175 EEFQTSRLPQYRKGLVRTSLAVECGAVFPLLEQLLQQPSSPSCVRQKVLKCFSSWVQLEVPL---QDCEALIQAAFAALQ  251 (963)
T ss_dssp             HHHTTCCC---------CCSGGGHHHHHHHHHHHHSCTTCCHHHHHHHHHHHHHHHTSSCCG---GGTHHHHHHHHHHTT
T ss_pred             HHHhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHcCCCCc---ccchHHHHHHHHHhC
Confidence            520 010    0000    1110  1122333444332  2236667777776544322110   011233566666664


Q ss_pred             CCChHHHHHHHHHHHHhhCCh--HH-HHH---HHh--cCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCchh--------
Q 044999          150 SCNDGTRRYLLEILSALALLR--EV-RRV---LIC--LGGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRA--------  213 (461)
Q Consensus       150 ~~~~~~~~~a~~~L~~l~~~~--~~-~~~---~~~--~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~--------  213 (461)
                        ++.++..|+.++..+....  .. ...   ++.  .+..+.+...+..++.+.....++.+..+......        
T Consensus       252 --~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~~~~~~~~~~l~~~~~~  329 (963)
T 2x19_B          252 --DSELFDSSVEAIVNAISQPDAQRYVNTLLKLIPLVLGLQEQLRQAVQNGDMETSHGICRIAVALGENHSRALLDQVEH  329 (963)
T ss_dssp             --STTTHHHHHHHHHHHHTCTTGGGCHHHHHHHHHHHHTTHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHCGGG
T ss_pred             --CchHHHHHHHHHHHHHcccccccCHHHHHHHHHHHHhhHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhHHHHHcCccc
Confidence              5678999999999988432  11 111   111  11223333333445556556666666666543221        


Q ss_pred             HHHHHhcCChHHHHHhccc-----CCHHHHHHHHHHHHHHhcC-cc-------chhhhhhc---CCHHHHHHHhCCCCh-
Q 044999          214 RRLLVELGVIPGLVELFHI-----GDWTTKLVAGNTLGVVAAH-VE-------YITPVAEA---GAIPLYAELLQGPDS-  276 (461)
Q Consensus       214 ~~~~~~~~~i~~L~~ll~~-----~~~~~~~~a~~~L~~l~~~-~~-------~~~~~~~~---g~i~~L~~ll~~~~~-  276 (461)
                      ...+  ...++.++.+...     .++++...++..+..++.. ..       ........   .+++.++..+..++. 
T Consensus       330 ~~~~--~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ll~~~~~p~~~  407 (963)
T 2x19_B          330 WQSF--LALVNMIMFCTGIPGHYPVNETTSSLTLTFWYTLQDDILSFEAEKQAVYQQVYRPVYFQLVDVLLHKAQFPSDE  407 (963)
T ss_dssp             HHHH--HHHHHHHHHHHTCSSCTTTTCGGGGGGHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHH
T ss_pred             hHHH--HHHHHHHHHHHcCCCCCCchhhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCCcc
Confidence            0111  1345555555543     2444555556555555542 10       00111110   234444444433211 


Q ss_pred             --------------hHHHHHHHHHHHhccCcc--cHHHHHHHHHHHh----ccCCHHHHHHHHHHHHHhhCCCCchhHHh
Q 044999          277 --------------TGKEISEDVFCILAVSEA--NANAIAEHLVRIL----REGDNEANAAAADVLWDLAGYKHSVPVIR  336 (461)
Q Consensus       277 --------------~~~~~a~~~L~~l~~~~~--~~~~i~~~l~~ll----~~~~~~~~~~a~~~L~~l~~~~~~~~~l~  336 (461)
                                    +.|..+..+|..++....  .-..+.+.+...+    .+.++..++.++.+++.++......    
T Consensus       408 ~~~~~~~de~~~~~~~r~~~~~~L~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~w~~~eaal~al~~i~~~~~~~----  483 (963)
T 2x19_B          408 EYGFWSSDEKEQFRIYRVDISDTLMYVYEMLGAELLSNLYDKLGRLLTSSEEPYSWQHTEALLYGFQSIAETIDVN----  483 (963)
T ss_dssp             HHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTCCCSCCHHHHHHHHHHHHHHTTSCCSS----
T ss_pred             cccCCChhHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhhcCch----
Confidence                          123445555555543222  1122225555556    5568899999999999999652211    


Q ss_pred             hcCCHHHHHHhh---cCCCHHHHHHHHHHHHHhcCC-hhhHHHHHhCCChHHHHHhccCCCHHHHHHHHHHHHHhcCC
Q 044999          337 NSGAIPILVNLL---RGENDEVREKVSGAIAQLSYN-EADRVALADAGAVPIMIELLHDESEELRDNAAESLINFSED  410 (461)
Q Consensus       337 ~~g~i~~L~~ll---~~~~~~v~~~a~~~L~~l~~~-~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~  410 (461)
                      ....++.++..+   .++++.++..++++++.++.. ..+. .+.. ..++.|+..+++  +.++..|+.++.+++.+
T Consensus       484 ~~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~-~~l~-~vl~~l~~~l~~--~~V~~~A~~al~~l~~~  557 (963)
T 2x19_B          484 YSDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHP-VMIN-SVLPLVLHALGN--PELSVSSVSTLKKICRE  557 (963)
T ss_dssp             CCSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCH-HHHT-TTHHHHHHHTTC--GGGHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCH-HHHH-HHHHHHHHHhCC--chHHHHHHHHHHHHHHH
Confidence            112334444443   335788999999999999872 2222 2333 578888888854  88999999999999854

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B

Probab=97.81  E-value=0.019  Score=60.48  Aligned_cols=383  Identities=12%  Similarity=0.084  Sum_probs=203.8

Q ss_pred             cHHHhHHHHHHHhhc-----CCHHHHHHHHHHHHhhc-C---CCc--------h----hHHHhhHHHHHHhhccCCCCCC
Q 044999            7 NWEEAFNRFEQAVVS-----GSEALQVKALTKLARVS-K---FAP--------Q----DILAATIPILARLLGENNFSGN   65 (461)
Q Consensus         7 ~~~~~~~~l~~ll~~-----~~~~~~~~a~~~l~~la-~---~~~--------~----~~l~~~i~~l~~~l~~~~~~~~   65 (461)
                      +|.+.++.++..+++     .++.....+...|..++ .   ...        +    ..+..+++.+...+..    .+
T Consensus       138 ~Wp~~l~~l~~~~~~~~~~~~~~~~~~~~l~iL~~l~ee~~~~~~~~~~r~~~~~~l~~~~~~i~~ll~~~l~~----~~  213 (963)
T 2x19_B          138 AWPCAVADMVRLFQAEDSPVDGQGRCLALLELLTVLPEEFQTSRLPQYRKGLVRTSLAVECGAVFPLLEQLLQQ----PS  213 (963)
T ss_dssp             TSTTHHHHHHHHHCC------CHHHHHHHHHHHHHHHHHHTTCCC---------CCSGGGHHHHHHHHHHHHSC----TT
T ss_pred             ccchHHHHHHHHHhhhccCCCcHHHHHHHHHHHHhCHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhC----CC
Confidence            599999999999876     35566777777777766 1   110        1    1111255666666765    33


Q ss_pred             CcHHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHhcCCCCCHHHHHHHHHHHHHHhccCh--hhHHHHH---H--c
Q 044999           66 LTRSIQQAAAYCLKQIASQADGALATEIGQSGVINSVLRLFPQSDDSFRTVLVKCLRVFVTFGN--ENRVIVA---R--N  138 (461)
Q Consensus        66 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~--~~~~~~~---~--~  138 (461)
                      ++......+..++...... ....   ......++.+.+.+.  ++..+..++.++..+.....  .....+.   .  .
T Consensus       214 ~~~~~~~~~l~~l~~wi~~-~~~~---~~~~~ll~~l~~~l~--~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~l~~~~~  287 (963)
T 2x19_B          214 SPSCVRQKVLKCFSSWVQL-EVPL---QDCEALIQAAFAALQ--DSELFDSSVEAIVNAISQPDAQRYVNTLLKLIPLVL  287 (963)
T ss_dssp             CCHHHHHHHHHHHHHHHTS-SCCG---GGTHHHHHHHHHHTT--STTTHHHHHHHHHHHHTCTTGGGCHHHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHHcC-CCCc---ccchHHHHHHHHHhC--CchHHHHHHHHHHHHHcccccccCHHHHHHHHHHHH
Confidence            3223555566666544432 1110   011334666777774  45567888888887775321  1111111   0  1


Q ss_pred             CCHHHHHHHhcCCChHHHHHHHHHHHHhhCChHHHHHHHh--------cCCHHHHHHHHcC-----CCHHHHHHHHHHHH
Q 044999          139 GGLEIVIDLLNSCNDGTRRYLLEILSALALLREVRRVLIC--------LGGLRYLVEAVSF-----GSMVSRERACQAIG  205 (461)
Q Consensus       139 g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~--------~~~l~~l~~~l~~-----~~~~~~~~a~~~L~  205 (461)
                      +..+.+.+.+...+.+.....++.+..+.....  ..+..        ...++.++.+..+     .++++...++....
T Consensus       288 ~~~~~~~~~~~~~d~~~~~~~~~l~~~~~~~~~--~~l~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~  365 (963)
T 2x19_B          288 GLQEQLRQAVQNGDMETSHGICRIAVALGENHS--RALLDQVEHWQSFLALVNMIMFCTGIPGHYPVNETTSSLTLTFWY  365 (963)
T ss_dssp             TTHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH--HHHHHCGGGHHHHHHHHHHHHHHHTCSSCTTTTCGGGGGGHHHHH
T ss_pred             hhHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhH--HHHHcCccchHHHHHHHHHHHHHHcCCCCCCchhhhhhhhHHHHH
Confidence            112222233344455555556666666552211  11110        1345566666654     24456666666666


Q ss_pred             HhhcCc--------hh-HHHHHh--cCChHHHHHhcccCCH---------------HHHHHHHHHHHHHhcCccchhhhh
Q 044999          206 LLAVTG--------RA-RRLLVE--LGVIPGLVELFHIGDW---------------TTKLVAGNTLGVVAAHVEYITPVA  259 (461)
Q Consensus       206 ~l~~~~--------~~-~~~~~~--~~~i~~L~~ll~~~~~---------------~~~~~a~~~L~~l~~~~~~~~~~~  259 (461)
                      .++...        +. ...+..  ...++.++..+..++.               +.+..+..+|..++....  ..+.
T Consensus       366 ~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ll~~~~~p~~~~~~~~~~de~~~~~~~r~~~~~~L~~~~~~~~--~~~l  443 (963)
T 2x19_B          366 TLQDDILSFEAEKQAVYQQVYRPVYFQLVDVLLHKAQFPSDEEYGFWSSDEKEQFRIYRVDISDTLMYVYEMLG--AELL  443 (963)
T ss_dssp             HHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHT--HHHH
T ss_pred             HHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHHcc--HHHH
Confidence            665411        11 111111  1234444444432221               123444555555553211  0110


Q ss_pred             hcCCHHHHHHHh----CCCChhHHHHHHHHHHHhccCccc-HHHHHHHHHHHh---ccCCHHHHHHHHHHHHHhhCC-CC
Q 044999          260 EAGAIPLYAELL----QGPDSTGKEISEDVFCILAVSEAN-ANAIAEHLVRIL---REGDNEANAAAADVLWDLAGY-KH  330 (461)
Q Consensus       260 ~~g~i~~L~~ll----~~~~~~~~~~a~~~L~~l~~~~~~-~~~i~~~l~~ll---~~~~~~~~~~a~~~L~~l~~~-~~  330 (461)
                       .-+++.+...+    .+.++..++.++.++..++..... .....+.++..+   .++++.++..++++++.++.. ..
T Consensus       444 -~~~~~~l~~~l~~~~~~~~w~~~eaal~al~~i~~~~~~~~~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~  522 (963)
T 2x19_B          444 -SNLYDKLGRLLTSSEEPYSWQHTEALLYGFQSIAETIDVNYSDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLAD  522 (963)
T ss_dssp             -HHHHHHHHHHHHTCCCSCCHHHHHHHHHHHHHHTTSCCSSCCSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHH
T ss_pred             -HHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHh
Confidence             11123333444    456788999999999999754321 111223344333   345788999999999999853 12


Q ss_pred             chhHHhhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCChhhHHHHHh--CCChHHHHHhccC--CCHHHHHHHHHHHHH
Q 044999          331 SVPVIRNSGAIPILVNLLRGENDEVREKVSGAIAQLSYNEADRVALAD--AGAVPIMIELLHD--ESEELRDNAAESLIN  406 (461)
Q Consensus       331 ~~~~l~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~--~~~i~~L~~ll~~--~~~~~~~~a~~~L~~  406 (461)
                      .. .. -..+++.++..+.+  +.++..|+.++.+++.  .++..+..  ...+..|..++..  -+...+..+..++..
T Consensus       523 ~~-~~-l~~vl~~l~~~l~~--~~V~~~A~~al~~l~~--~~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~  596 (963)
T 2x19_B          523 HP-VM-INSVLPLVLHALGN--PELSVSSVSTLKKICR--ECKYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGF  596 (963)
T ss_dssp             CH-HH-HTTTHHHHHHHTTC--GGGHHHHHHHHHHHHH--HTGGGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred             CH-HH-HHHHHHHHHHHhCC--chHHHHHHHHHHHHHH--HHHHHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHH
Confidence            22 22 23688888888865  7899999999999996  22222221  1123334445543  367888888999998


Q ss_pred             hcCC
Q 044999          407 FSED  410 (461)
Q Consensus       407 l~~~  410 (461)
                      ++..
T Consensus       597 i~~~  600 (963)
T 2x19_B          597 LLSA  600 (963)
T ss_dssp             HHTT
T ss_pred             HHhc
Confidence            8754

>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}

Probab=97.77  E-value=5.4e-05  Score=70.88  Aligned_cols=253  Identities=15%  Similarity=0.167  Sum_probs=157.7

Q ss_pred             HHHHHhcCCCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHhhCChHHHHHHHh
Q 044999           99 INSVLRLFPQSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLNSCNDGTRRYLLEILSALALLREVRRVLIC  178 (461)
Q Consensus        99 l~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~  178 (461)
                      .+.|+.-|-++.+++|..|+.+++.+........      |-.       ...+.   ..|++.++-++.+         
T Consensus       176 cE~L~~DLFdp~WEiRHGAALGLREILR~hG~GA------GR~-------~~~N~---DLAvRLLCVLALD---------  230 (800)
T 3oc3_A          176 FEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGG------DIQ-------IRVDS---KLFSKIYEILVTD---------  230 (800)
T ss_dssp             THHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----------CC-------CCCCT---THHHHHHHHHHHB---------
T ss_pred             HHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCC------cee-------ccccH---HHHHHHHHHHHhc---------
Confidence            4566666778888889999988887665332110      100       11111   3444444433310         


Q ss_pred             cCCHHHHHHHHcCC-CHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhcccCCHHHHHHHHHHHHHHhcCccchhh
Q 044999          179 LGGLRYLVEAVSFG-SMVSRERACQAIGLLAVTGRARRLLVELGVIPGLVELFHIGDWTTKLVAGNTLGVVAAHVEYITP  257 (461)
Q Consensus       179 ~~~l~~l~~~l~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~  257 (461)
                           .+-++..+. -..||+.++.+|+.+ .+-+..     ..++..++..+..+.++++..++-.|.++...-.   .
T Consensus       231 -----RFGDYVSDqVVAPVRETaAQtLGaL-~hLp~e-----~~IL~qLV~~l~~~~WEVRHGGLLGLKYL~DLL~---~  296 (800)
T 3oc3_A          231 -----KFNDFVDDRTVAPVRDAAAYLLSRI-YPLIGP-----NDIIEQLVGFLDSGDWQVQFSGLIALGYLKEFVE---D  296 (800)
T ss_dssp             -----CCBBCSSSSCBCHHHHHHHHHHHHH-TTTSCS-----CCHHHHHTTGGGCSCHHHHHHHHHHHHHTGGGCC---C
T ss_pred             -----cccccccCeeeeehHHHHHHHHHHH-HhCChh-----HHHHHHHHhhcCCCCeeehhhhHHHHHHHHHHHH---H
Confidence                 111111222 237888888888887 443332     2345555555577788999988888888821111   1


Q ss_pred             hhhcCCHHHHHHHhCCCChhHHHHHHHHHHHhccCcccHHHHHHHHHHHhccCC--HHHHHHHHHHHHHhhCCCCchhHH
Q 044999          258 VAEAGAIPLYAELLQGPDSTGKEISEDVFCILAVSEANANAIAEHLVRILREGD--NEANAAAADVLWDLAGYKHSVPVI  335 (461)
Q Consensus       258 ~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~l~~ll~~~~--~~~~~~a~~~L~~l~~~~~~~~~l  335 (461)
                        -.++++.++..|.+.+.+|+..|+.+|..++ .++....+...+.+.|.+.+  .......+..|..|+..+..  .-
T Consensus       297 --Ld~Vv~aVL~GL~D~DDDVRAVAAetLiPIA-~p~~l~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~--a~  371 (800)
T 3oc3_A          297 --KDGLCRKLVSLLSSPDEDIKLLSAELLCHFP-ITDSLDLVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPE--LS  371 (800)
T ss_dssp             --HHHHHHHHHHHTTCSSHHHHHHHHHHHTTSC-CSSTHHHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTT--CC
T ss_pred             --HHHHHHHHHhhcCCcccHHHHHHHHHhhhhc-chhhHHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcc--cc
Confidence              2455778888888889999999999999988 55556666677777775432  22233556677777755432  11


Q ss_pred             hhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHH-hccCCCHHHHHHHHHHHH
Q 044999          336 RNSGAIPILVNLLRGENDEVREKVSGAIAQLSYNEADRVALADAGAVPIMIE-LLHDESEELRDNAAESLI  405 (461)
Q Consensus       336 ~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~-ll~~~~~~~~~~a~~~L~  405 (461)
                      .....+|.|..++...-..||..++.+|..+.. .         ..+..+.+ ++-.++++++..+..+-.
T Consensus       372 ~dp~LVPRL~PFLRHtITSVR~AVL~TL~tfL~-~---------~~LRLIFQNILLE~neeIl~lS~~VWk  432 (800)
T 3oc3_A          372 IPPERLKDIFPCFTSPVPEVRTSILNMVKNLSE-E---------SIDFLVAEVVLIEEKDEIREMAIKLLK  432 (800)
T ss_dssp             CCSGGGGGTGGGGTCSSHHHHHHHHHHTTTCCC-H---------HHHHHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred             cChHHHHHHHhhhcCCcHHHHHHHHHHHHHHHh-h---------hHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence            234789999999999999999999999988771 1         12333333 345688888888777664

>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B

Probab=97.73  E-value=0.021  Score=60.74  Aligned_cols=386  Identities=10%  Similarity=0.056  Sum_probs=204.2

Q ss_pred             CcHHHhHHHHHHHhhcCCHHHHHHHHHHHHhhc---CC---C--c--h-----hHHHh----hHHHHHHhhccCCCCCCC
Q 044999            6 TNWEEAFNRFEQAVVSGSEALQVKALTKLARVS---KF---A--P--Q-----DILAA----TIPILARLLGENNFSGNL   66 (461)
Q Consensus         6 ~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~la---~~---~--~--~-----~~l~~----~i~~l~~~l~~~~~~~~~   66 (461)
                      ..|.+.++.++..++ .++..+..+..+|..++   ..   .  .  +     ..+..    +++.+.+.+..    . .
T Consensus       134 ~~Wp~ll~~L~~~~~-~~~~~~~~~l~~L~~l~eev~~~~~~~~~~~r~~~lk~~l~~~~~~i~~~~~~~l~~----~-~  207 (1049)
T 3m1i_C          134 QNWPEFIPELIGSSS-SSVNVCENNMIVLKLLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQ----G-S  207 (1049)
T ss_dssp             TTCTTHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH----C-C
T ss_pred             ccchHHHHHHHHHHc-cChHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh----c-C
Confidence            479999999999997 55666666777777766   11   0  0  0     22333    55666677765    3 3


Q ss_pred             cHHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHhcCCCCCHHHHHHHHHHHHHHhccC--hh---hHHHHHH--cC
Q 044999           67 TRSIQQAAAYCLKQIASQADGALATEIGQSGVINSVLRLFPQSDDSFRTVLVKCLRVFVTFG--NE---NRVIVAR--NG  139 (461)
Q Consensus        67 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~l~~~~--~~---~~~~~~~--~g  139 (461)
                      ++.++..++.++.+.... -+  ...+.+...++.+.+.+. .++.++..++.++..+....  +.   ....+..  .+
T Consensus       208 ~~~~~~~aL~~l~~~l~w-i~--~~~~~~~~ll~~l~~~~l-~~~~~~~~a~~~L~~i~~~~~~~~~~~~~~~~~~l~~~  283 (1049)
T 3m1i_C          208 SSSLIVATLESLLRYLHW-IP--YRYIYETNILELLSTKFM-TSPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQN  283 (1049)
T ss_dssp             CHHHHHHHHHHHHHHTTT-SC--THHHHSSSHHHHHHTHHH-HSHHHHHHHHHHHHHHHHCCCCTTCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHhh-CC--HHHHhhhhHHHHHHHHhC-CCHhHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHHHH
Confidence            456777788888877653 22  123445566776663222 37888889999998777542  11   1111111  11


Q ss_pred             CHHHHHH-H----------h---cCCChHHHHHHHHHHHHhhC--------ChHHHHHHHhcCCHHHHHHHHcCCCHHHH
Q 044999          140 GLEIVID-L----------L---NSCNDGTRRYLLEILSALAL--------LREVRRVLICLGGLRYLVEAVSFGSMVSR  197 (461)
Q Consensus       140 ~i~~L~~-l----------l---~~~~~~~~~~a~~~L~~l~~--------~~~~~~~~~~~~~l~~l~~~l~~~~~~~~  197 (461)
                      .+..+.. +          .   ...+.+.....+..+..+..        .++....+  ..+++.++.....++.++.
T Consensus       284 ~l~~l~~si~p~~~~l~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l--~~~l~~ll~~~~~~d~~v~  361 (1049)
T 3m1i_C          284 TLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELL--LNAHQYLIQLSKIEERELF  361 (1049)
T ss_dssp             HHHHHHHHTCCTTSCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHH--HHHHHHHHHHHTSSCHHHH
T ss_pred             HHHHHHHhhCCCcccHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHcCChhhHHHH--HHHHHHHHHHHcCCcHHHH
Confidence            2222211 1          1   11223333444444433321        11112211  1356667777777788899


Q ss_pred             HHHHHHHHHhhc----CchhHHHHHh--cCChHHHHHhcccC-------------------CH---HHHHHHHHHHHHHh
Q 044999          198 ERACQAIGLLAV----TGRARRLLVE--LGVIPGLVELFHIG-------------------DW---TTKLVAGNTLGVVA  249 (461)
Q Consensus       198 ~~a~~~L~~l~~----~~~~~~~~~~--~~~i~~L~~ll~~~-------------------~~---~~~~~a~~~L~~l~  249 (461)
                      ..++.....++.    .+..+..+..  ...++.++..+..+                   +.   ..+..+..+|..++
T Consensus       362 ~~~lefw~~l~~~l~~~~~~~~~~~~~l~~Lv~~ll~~m~~~ed~~~~~dd~~e~~r~~~~d~d~~~~~~~~~~~L~~l~  441 (1049)
T 3m1i_C          362 KTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREVLVYLT  441 (1049)
T ss_dssp             HHHHHHHHHHHHHHHHSTTCGGGGHHHHHHHHHHHHHTCCCCTTCCEEECTTSCEEECSSCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhcCCCcceeeeeCCCCcchHhhhccchHHHHHHHHHHHHHHHH
Confidence            999888888766    2221111111  12344445444311                   11   22334556666666


Q ss_pred             cCccchhhhhhcCCHHHHHHHhC--CCChhHHHHHHHHHHHhccCccc--HHHHH----HHHHHHhcc-----CCHHHHH
Q 044999          250 AHVEYITPVAEAGAIPLYAELLQ--GPDSTGKEISEDVFCILAVSEAN--ANAIA----EHLVRILRE-----GDNEANA  316 (461)
Q Consensus       250 ~~~~~~~~~~~~g~i~~L~~ll~--~~~~~~~~~a~~~L~~l~~~~~~--~~~i~----~~l~~ll~~-----~~~~~~~  316 (461)
                      ....  ..+ -.-+.+.+-..+.  ..++..++.++.+++.++..-..  ...+.    +.+..+...     +++.++.
T Consensus       442 ~~~~--~~~-l~~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~~~~~~~~v~~  518 (1049)
T 3m1i_C          442 HLNV--IDT-EEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKRGKDNKAVVAS  518 (1049)
T ss_dssp             HHCH--HHH-HHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSCSHHHHHHHHH
T ss_pred             ccCH--HHH-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhhccccchHHHHH
Confidence            3211  111 0111333444444  34788999999999998653222  12222    444443221     2344555


Q ss_pred             HHHHHHHHhhCCCCchhHHhhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCChhhHHHHHh------CCChHHHH----
Q 044999          317 AAADVLWDLAGYKHSVPVIRNSGAIPILVNLLRGENDEVREKVSGAIAQLSYNEADRVALAD------AGAVPIMI----  386 (461)
Q Consensus       317 ~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~------~~~i~~L~----  386 (461)
                      .++++++.++..-....... ..+++.++..+.++++.|+..|+.++.+++..  ++..+..      ...++.++    
T Consensus       519 ~~~~~lgry~~~~~~~~~~l-~~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~--~~~~l~~~~~~~~~p~~~~il~~l~  595 (1049)
T 3m1i_C          519 DIMYVVGQYPRFLKAHWNFL-RTVILKLFEFMHETHEGVQDMACDTFIKIVQK--CKYHFVIQQPRESEPFIQTIIRDIQ  595 (1049)
T ss_dssp             HHHHHHHHCHHHHHHCHHHH-HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHH--HTHHHHSCCTTCSSCHHHHHHHTHH
T ss_pred             HHHHHHHHHHHHHHhHHHHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH--HHHHhhcccCCCCCcHHHHHHHHHH
Confidence            67888887764211111222 13567778888888899999999999999972  3333330      02233333    


Q ss_pred             HhccCCCHHHHHHHHHHHHHhcC
Q 044999          387 ELLHDESEELRDNAAESLINFSE  409 (461)
Q Consensus       387 ~ll~~~~~~~~~~a~~~L~~l~~  409 (461)
                      .++..-+.+-......++..+..
T Consensus       596 ~~~~~~~~~~~~~~~eai~~ii~  618 (1049)
T 3m1i_C          596 KTTADLQPQQVHTFYKACGIIIS  618 (1049)
T ss_dssp             HHHTTSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHhCCHHHHHHHHHHHHHHHH
Confidence            34444445455566666666643

>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B

Probab=97.71  E-value=0.05  Score=57.18  Aligned_cols=371  Identities=14%  Similarity=0.134  Sum_probs=195.5

Q ss_pred             HHHHHHHHHHHHhhc-CCCchhHHHhhHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHhcC-C---c--------hhH
Q 044999           24 EALQVKALTKLARVS-KFAPQDILAATIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQA-D---G--------ALA   90 (461)
Q Consensus        24 ~~~~~~a~~~l~~la-~~~~~~~l~~~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~-~---~--------~~~   90 (461)
                      ..++.+.+.++..++ ..-+ ..+...++.+++.++.    +.   ......+..|..|.++- +   .        ..+
T Consensus       114 ~~i~nKLa~~la~I~~~~~p-~~Wp~~l~dL~~~l~~----~~---~~~~~~L~iL~~L~EEV~~~~~~~l~~~r~~~lk  185 (1023)
T 4hat_C          114 KNLINKSDLTLVQILKQEWP-QNWPEFIPELIGSSSS----SV---NVCENNMIVLKLLSEEVFDFSAEQMTQAKALHLK  185 (1023)
T ss_dssp             HHHHHHHHHHHHHHHHHHTT-TTCTTHHHHHHHHTTT----CH---HHHHHHHHHHHHHHHHHHTSCTTTSCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhCh-hhchHHHHHHHHHhcC----CH---HHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHH
Confidence            455666777788777 2211 1123377888888864    22   23333667777666520 0   0        011


Q ss_pred             HHHHhc--CCHHHHHhcCC-CCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHH-HHhcCCChHHHHHHHHHHHHh
Q 044999           91 TEIGQS--GVINSVLRLFP-QSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVI-DLLNSCNDGTRRYLLEILSAL  166 (461)
Q Consensus        91 ~~~~~~--~~l~~L~~ll~-~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~-~ll~~~~~~~~~~a~~~L~~l  166 (461)
                      +.+...  ..++.+.+.+. ..++.+...+..++.....--  .-..+.+.+.++.++ .++.  ++..+..|+.+|..+
T Consensus       186 ~~l~~~~~~I~~ll~~iL~~~~~~~l~~~~L~~l~s~l~WI--~i~~i~~~~ll~~l~~~~L~--~~~~r~~A~ecL~eI  261 (1023)
T 4hat_C          186 NSMSKEFEQIFKLCFQVLEQGASSSLIVATLESLLRYLHWI--PYRYIYETNILELLSTKFMT--SPDTRAITLKCLTEV  261 (1023)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTTS--CTHHHHSSSHHHHHHTHHHH--SHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhC--CHHHhcchhHHHHHHHHHcC--CHHHHHHHHHHHHHH
Confidence            122221  12233333443 345666777888888666421  124556678888888 7875  567999999999998


Q ss_pred             hC-C---h--HHHHHHHhc--CCHHHH-----------HHHH---cCCCHHHHHHHHHHHHHhhcCchh--------HHH
Q 044999          167 AL-L---R--EVRRVLICL--GGLRYL-----------VEAV---SFGSMVSRERACQAIGLLAVTGRA--------RRL  216 (461)
Q Consensus       167 ~~-~---~--~~~~~~~~~--~~l~~l-----------~~~l---~~~~~~~~~~a~~~L~~l~~~~~~--------~~~  216 (461)
                      .. .   +  .....+...  +.+..+           -..+   ...+.+....-++.+..+....-.        +..
T Consensus       262 v~~~~~~~~~~~~~~l~~lf~~~l~~l~~~i~p~~~~l~~~~~~~~~~D~e~~~~l~~l~~~~~e~~~~li~~~~~~~~~  341 (1023)
T 4hat_C          262 SNLKIPQDNDLIKRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLREL  341 (1023)
T ss_dssp             HTSCCCSSCHHHHHHHHHHHHHHHHHHHHHTCCTTCCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHGGGGTSCGGGHHH
T ss_pred             HccccCCchHHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHhCCcchhHH
Confidence            84 2   2  111111110  111111           1111   122445555555555544332211        111


Q ss_pred             HHhcCChHHHHHhcccCCHHHHHHHHHHHHHHhcC--cc-chhhhhhc---CCHHHHHHHhCCCC-----------h---
Q 044999          217 LVELGVIPGLVELFHIGDWTTKLVAGNTLGVVAAH--VE-YITPVAEA---GAIPLYAELLQGPD-----------S---  276 (461)
Q Consensus       217 ~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~--~~-~~~~~~~~---g~i~~L~~ll~~~~-----------~---  276 (461)
                      +  ..++..|+.+-..++.++-..++.....++..  .+ .+......   ..++.++.-+..++           +   
T Consensus       342 l--~~~l~~Ll~~~~~~d~ei~~~tl~FW~~L~~~l~~e~~~~~~~~~~~~~L~~vli~km~~P~e~~ive~d~~~~~~e  419 (1023)
T 4hat_C          342 L--LNAHQYLIQLSKIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVRE  419 (1023)
T ss_dssp             H--HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTTSTTTGGGGHHHHHHHHHHHHHSCCCCTTCCEEECTTSCEEEC
T ss_pred             H--HHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCccHHHH
Confidence            1  01233455555566777877777777677653  11 12211111   23344444443322           0   


Q ss_pred             -----h--HHH-HHHHHHHHhcc--CcccHHHHHHHHHHHhcc--CCHHHHHHHHHHHHHhhCCCCc-hhHHhhcCCHHH
Q 044999          277 -----T--GKE-ISEDVFCILAV--SEANANAIAEHLVRILRE--GDNEANAAAADVLWDLAGYKHS-VPVIRNSGAIPI  343 (461)
Q Consensus       277 -----~--~~~-~a~~~L~~l~~--~~~~~~~i~~~l~~ll~~--~~~~~~~~a~~~L~~l~~~~~~-~~~l~~~g~i~~  343 (461)
                           +  ... ..-.+|..++.  .++....+.+.+.+.+.+  .++..++.++.+++.++..... ...-.-..+++.
T Consensus       420 ~~~d~d~~~~f~~~Rd~L~~l~~l~~~~~~~~~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~  499 (1023)
T 4hat_C          420 FVKESDTIQLYKSEREVLVYLTHLNVIDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKD  499 (1023)
T ss_dssp             SSCCGGGHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHH
T ss_pred             hccchHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHH
Confidence                 0  011 11133333321  112222222555555543  5799999999999999976432 232333357788


Q ss_pred             HHHhhcC-----CCHHHHHHHHHHHHHhcC-ChhhHHHHHhCCChHHHHHhccCCCHHHHHHHHHHHHHhcCC
Q 044999          344 LVNLLRG-----ENDEVREKVSGAIAQLSY-NEADRVALADAGAVPIMIELLHDESEELRDNAAESLINFSED  410 (461)
Q Consensus       344 L~~ll~~-----~~~~v~~~a~~~L~~l~~-~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~  410 (461)
                      |+.++..     .+..++..++++++..+. -..+...+.  ..+..|.+.+.++++.++..|++++.+|+..
T Consensus       500 Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~~L~--~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~  570 (1023)
T 4hat_C          500 LLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLR--TVILKLFEFMHETHEGVQDMACDTFIKIVQK  570 (1023)
T ss_dssp             HHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHHHHH--HHHHHHHHHTTCSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHhhhccccCcchHHHHHHHHHHHHHHHHHHhccHHHHH--HHHHHHHHHhhcCCHHHHHHHHHHHHHHHHH
Confidence            8888763     334466677788888777 222222221  1355566666678899999999999999975

>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5

Probab=97.71  E-value=1.2e-05  Score=69.19  Aligned_cols=187  Identities=16%  Similarity=0.130  Sum_probs=131.8

Q ss_pred             HHhcCCCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHhhCChHHHHHHHhcCC
Q 044999          102 VLRLFPQSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLNSCNDGTRRYLLEILSALALLREVRRVLICLGG  181 (461)
Q Consensus       102 L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~  181 (461)
                      +..++.++++.++..++..+                  ....+..+++++++.+|..++..+   .              
T Consensus        55 ~~~ll~d~~~~VR~~AA~~l------------------~~~~l~~L~~D~~~~VR~~aA~~L---~--------------   99 (244)
T 1lrv_A           55 AVQYLADPFWERRAIAVRYS------------------PVEALTPLIRDSDEVVRRAVAYRL---P--------------   99 (244)
T ss_dssp             GGGGTTCSSHHHHHHHHTTS------------------CGGGGGGGTTCSSHHHHHHHHTTS---C--------------
T ss_pred             HHHHhcCCCHHHHHHHHHhC------------------CHHHHHHHccCcCHHHHHHHHHHC---C--------------
Confidence            44667888999888888642                  123467788889999999888642   1              


Q ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhcccCCHHHHHHHHHHHHHHhcCccchhhhhhc
Q 044999          182 LRYLVEAVSFGSMVSRERACQAIGLLAVTGRARRLLVELGVIPGLVELFHIGDWTTKLVAGNTLGVVAAHVEYITPVAEA  261 (461)
Q Consensus       182 l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~  261 (461)
                      .+.+..++.++++.+|..++..+                 ..+.+..+++++++.++..++..   +.            
T Consensus       100 ~~~L~~ll~D~d~~VR~~aA~~l-----------------~~~~L~~L~~D~d~~VR~~aA~~---l~------------  147 (244)
T 1lrv_A          100 REQLSALMFDEDREVRITVADRL-----------------PLEQLEQMAADRDYLVRAYVVQR---IP------------  147 (244)
T ss_dssp             SGGGGGTTTCSCHHHHHHHHHHS-----------------CTGGGGGGTTCSSHHHHHHHHHH---SC------------
T ss_pred             HHHHHHHHcCCCHHHHHHHHHhC-----------------CHHHHHHHHcCCCHHHHHHHHHh---cC------------
Confidence            13466778888999999888742                 12345667788899999887762   11            


Q ss_pred             CCHHHHHHHhCCCChhHHHHHHHHHHHhccCcccHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCchhHHhhcCCH
Q 044999          262 GAIPLYAELLQGPDSTGKEISEDVFCILAVSEANANAIAEHLVRILREGDNEANAAAADVLWDLAGYKHSVPVIRNSGAI  341 (461)
Q Consensus       262 g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~l~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i  341 (461)
                        .+.+..+++++++.||..++..   +..         +.+..++.+.++.|+..++..+                 ..
T Consensus       148 --~~~l~~l~~D~d~~VR~~aa~~---l~~---------~ll~~ll~D~d~~VR~aaa~~l-----------------~~  196 (244)
T 1lrv_A          148 --PGRLFRFMRDEDRQVRKLVAKR---LPE---------ESLGLMTQDPEPEVRRIVASRL-----------------RG  196 (244)
T ss_dssp             --GGGGGGTTTCSCHHHHHHHHHH---SCG---------GGGGGSTTCSSHHHHHHHHHHC-----------------CG
T ss_pred             --HHHHHHHHcCCCHHHHHHHHHc---CCH---------HHHHHHHcCCCHHHHHHHHHhC-----------------CH
Confidence              2344566778899999888775   111         3445667888999999888652                 23


Q ss_pred             HHHHHhhcCCCHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhccCCCHHHHHHHHHHH
Q 044999          342 PILVNLLRGENDEVREKVSGAIAQLSYNEADRVALADAGAVPIMIELLHDESEELRDNAAESL  404 (461)
Q Consensus       342 ~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L  404 (461)
                      +.|..++.+++..|+..++..+.                 .+.|..+ ++++..|+..+...|
T Consensus       197 ~~L~~Ll~D~d~~VR~~aa~~l~-----------------~~~L~~L-~D~~~~VR~aa~~~L  241 (244)
T 1lrv_A          197 DDLLELLHDPDWTVRLAAVEHAS-----------------LEALREL-DEPDPEVRLAIAGRL  241 (244)
T ss_dssp             GGGGGGGGCSSHHHHHHHHHHSC-----------------HHHHHHC-CCCCHHHHHHHHCCC
T ss_pred             HHHHHHHcCCCHHHHHHHHHcCC-----------------HHHHHHc-cCCCHHHHHHHHHHh
Confidence            56778889999999998887642                 3566666 888999998886543

>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*

Probab=97.65  E-value=0.0028  Score=66.39  Aligned_cols=390  Identities=10%  Similarity=0.053  Sum_probs=207.9

Q ss_pred             cHHHhHHHHHHHhhc-----CCHHHHHHHHHHHHhhc-CCCchhHHHhhHHHHHHhhccCCCCCCCcHHHHHHHHHHHHH
Q 044999            7 NWEEAFNRFEQAVVS-----GSEALQVKALTKLARVS-KFAPQDILAATIPILARLLGENNFSGNLTRSIQQAAAYCLKQ   80 (461)
Q Consensus         7 ~~~~~~~~l~~ll~~-----~~~~~~~~a~~~l~~la-~~~~~~~l~~~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~   80 (461)
                      +.......++.++..     +...++.+.+.++..++ ..-+ ..+...++.++.+++.    ++.+ .........|..
T Consensus        82 ~~~~lr~~ll~~l~~~~~~~~~~~IrnKL~~~la~l~~~~~p-~~Wp~~i~~l~~~~~~----~~~~-~~~~~~LriL~~  155 (980)
T 3ibv_A           82 ELQMIRDSVWSYIKELSFLDEPAYISNAVQHLLTLLFLQLYP-SNWNDFFASLQGVIAA----SSQS-EFSNFYLKVLLS  155 (980)
T ss_dssp             HHHHHHHHHHHHHHHCCSTTSCTHHHHHHHHHHHHHHHHHTT-TTCTTHHHHHHHHHHH----HCCH-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhCc-ccCchHHHHHHHHhcC----CChh-HHHHHHHHHHHH
Confidence            445555666666653     34678888888888888 2111 1122367777777765    3221 122224445554


Q ss_pred             HHhc-CCc-------------hhHHHHHhc-------CCHHHHHhcCCCCCHHHHHHHHHHHHHHhccChhhHHHHHHcC
Q 044999           81 IASQ-ADG-------------ALATEIGQS-------GVINSVLRLFPQSDDSFRTVLVKCLRVFVTFGNENRVIVARNG  139 (461)
Q Consensus        81 l~~~-~~~-------------~~~~~~~~~-------~~l~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g  139 (461)
                      +.++ .+.             ..++.+.+.       .....|.+...+.++.+...+..++.....--  .-..+...+
T Consensus       156 i~EEv~~~~~~~~~~~~~r~~~lkd~m~~~~~~~i~~~~~~iL~~~~~~~~~~l~~~~L~~l~s~i~wi--~~~~i~~~~  233 (980)
T 3ibv_A          156 IGDEIADSLVLKTDVQIQKDNLVKDAIRANDMSDIVSFVYEMMLAYSNAKNYGTVGLCLQVYAQWVSWI--NINLIVNEP  233 (980)
T ss_dssp             HHHHHCCCCSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTS--CHHHHHCHH
T ss_pred             hHHHHHhcccccCHHHHhhhHHHHHHHHhccHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhc--CHHhhhcch
Confidence            4432 000             012333322       12222223323467778888888888777522  134555567


Q ss_pred             CHHHHHHHhcCCChHHHHHHHHHHHHhh---CChHHHHHHHhcCCHHHHHHHHc--CCCHHHHHHHHHHHHHhh------
Q 044999          140 GLEIVIDLLNSCNDGTRRYLLEILSALA---LLREVRRVLICLGGLRYLVEAVS--FGSMVSRERACQAIGLLA------  208 (461)
Q Consensus       140 ~i~~L~~ll~~~~~~~~~~a~~~L~~l~---~~~~~~~~~~~~~~l~~l~~~l~--~~~~~~~~~a~~~L~~l~------  208 (461)
                      .++.++.++..  +.++..|+.+|..+.   ..++.+..++..=.+...+..+.  .+|.+.....++.+..++      
T Consensus       234 ll~~l~~~L~~--~~~r~~A~ecL~ei~~k~~~~~~k~~li~~l~L~~~~~~l~~~~~D~d~~~~la~L~~~~ge~l~~~  311 (980)
T 3ibv_A          234 CMNLLYSFLQI--EELRCAACETMTEIVNKKMKPLEKLNLLNILNLNLFFSKSQEQSTDPNFDEHVAKLINAQGVELVAI  311 (980)
T ss_dssp             HHHHHHHHTTS--HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHCC-----CCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCC--hHHHHHHHHHHHHHHHcCCChhhHHHHHHHHhHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHH
Confidence            78888888865  789999999999987   23444444444311111122222  356666554444443221      


Q ss_pred             cCch-----h-HHHH-Hh-cCChHHHHHhcccCCHHHHHHHHHHHHHHhcC----cc---chhhhhh--cCCHHHHHHHh
Q 044999          209 VTGR-----A-RRLL-VE-LGVIPGLVELFHIGDWTTKLVAGNTLGVVAAH----VE---YITPVAE--AGAIPLYAELL  271 (461)
Q Consensus       209 ~~~~-----~-~~~~-~~-~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~----~~---~~~~~~~--~g~i~~L~~ll  271 (461)
                      ...+     . +... .. .+.++.++..+.+++.++-..++..+..+...    +.   .......  ...++.++.-+
T Consensus       312 ~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~~~~~deVs~~t~~Fw~~~l~~~~~~~~~~~~~~~~~~~l~~Ll~~li~k~  391 (980)
T 3ibv_A          312 KSDPSELSPELKENCSFQLYNLFPYLIRYLSDDYDETSTAVFPFLSDLLVSLRKESSSKELSASLKEFLKSLLEAIIKKM  391 (980)
T ss_dssp             HTSCC--CHHHHHHHHHHHHHTHHHHHHHHTCSSHHHHHTTHHHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHHHHTT
T ss_pred             ccCccccchhhhhhHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHc
Confidence            1111     0 1111 11 35788888999888888887777776655432    10   1111100  01233333333


Q ss_pred             CCC-----Ch-----------hHHHHHHHHHHHhcc-CcccHHH----HH-HHHHHHhc---cCCHHHHHHHHHHHHHhh
Q 044999          272 QGP-----DS-----------TGKEISEDVFCILAV-SEANANA----IA-EHLVRILR---EGDNEANAAAADVLWDLA  326 (461)
Q Consensus       272 ~~~-----~~-----------~~~~~a~~~L~~l~~-~~~~~~~----i~-~~l~~ll~---~~~~~~~~~a~~~L~~l~  326 (461)
                      +.+     +.           +.|+.....+..++. .++....    .. +.+.+.+.   +.++..++.++.+|+.++
T Consensus       392 ~yp~d~~~~~~~d~ed~~~F~e~Rk~l~~l~d~~~~l~~~~~l~~~~~~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~ia  471 (980)
T 3ibv_A          392 KYDESQEWDDDPDSEEEAEFQEMRKKLKIFQDTINSIDSSLFSSYMYSAITSSLSTAATLSPENSWQLIEFALYETYIFG  471 (980)
T ss_dssp             SCCTTCCCCCCSSSSTHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTT
T ss_pred             cCCCccccccccchhHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHH
Confidence            322     11           244444422323322 2222222    11 33334442   336889999999999998


Q ss_pred             CC-CCchhHH-----hhcCCHHHHHHhhc-----CCCHHHHHHHHHHHHHhcC-ChhhHHHHHhCCChHHHHHhc-----
Q 044999          327 GY-KHSVPVI-----RNSGAIPILVNLLR-----GENDEVREKVSGAIAQLSY-NEADRVALADAGAVPIMIELL-----  389 (461)
Q Consensus       327 ~~-~~~~~~l-----~~~g~i~~L~~ll~-----~~~~~v~~~a~~~L~~l~~-~~~~~~~~~~~~~i~~L~~ll-----  389 (461)
                      .. .......     .....++.+..++.     ..++.++..++++++..+. -..+      ...++.++..+     
T Consensus       472 E~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~~~l~rys~~~~~~------~~~l~~~L~~ll~~~g  545 (980)
T 3ibv_A          472 EGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPHPLVQLLYMEILVRYASFFDYE------SAAIPALIEYFVGPRG  545 (980)
T ss_dssp             TTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCCHHHHHHHHHHHHHTGGGGGTC------CTTHHHHHHHHTSTTT
T ss_pred             hhccccccccCcccchhHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhcC------chhHHHHHHHHhcccc
Confidence            64 2211111     01123455556654     6789999999999999988 2221      23455555544     


Q ss_pred             -cCCCHHHHHHHHHHHHHhcCCCc
Q 044999          390 -HDESEELRDNAAESLINFSEDPL  412 (461)
Q Consensus       390 -~~~~~~~~~~a~~~L~~l~~~~~  412 (461)
                       .++++.++..|+.++.+++.+..
T Consensus       546 l~~~~~~V~~~a~~af~~f~~~~~  569 (980)
T 3ibv_A          546 IHNTNERVRPRAWYLFYRFVKSIK  569 (980)
T ss_dssp             TTCCCTTTHHHHHHHHHHHHHHTT
T ss_pred             ccCCChhHHHHHHHHHHHHHHHhh
Confidence             34678899999999999986643

>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*

Probab=97.55  E-value=0.015  Score=51.33  Aligned_cols=203  Identities=13%  Similarity=0.094  Sum_probs=151.8

Q ss_pred             HHHhcCCHHHHHhcCCCCCHHHHHHHHHHHHHHhccChhhH---HHHHHcCCHHHHHHHhcC-CChHHHHHHHHHHHHhh
Q 044999           92 EIGQSGVINSVLRLFPQSDDSFRTVLVKCLRVFVTFGNENR---VIVARNGGLEIVIDLLNS-CNDGTRRYLLEILSALA  167 (461)
Q Consensus        92 ~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~---~~~~~~g~i~~L~~ll~~-~~~~~~~~a~~~L~~l~  167 (461)
                      .+...+.+..|+..|..-+.+.++.++..+.++.......+   ...... -.+.+.-++.. .++++...+-..|..+.
T Consensus        73 ei~~~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~-~peil~~L~~gYe~~diAl~~G~mLReci  151 (341)
T 1upk_A           73 ELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICT-QQNILFMLLKGYESPEIALNCGIMLRECI  151 (341)
T ss_dssp             HHHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHT-CTHHHHHHHHGGGSTTTHHHHHHHHHHHH
T ss_pred             HHHHhCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHc-CHHHHHHHHHhhccchhHhHHHHHHHHHH
Confidence            56677889999999999999989999988887776443321   111222 12223333322 24567777888888888


Q ss_pred             CChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCchh-HHHHHhc---CChHHHHHhcccCCHHHHHHHHH
Q 044999          168 LLREVRRVLICLGGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRA-RRLLVEL---GVIPGLVELFHIGDWTTKLVAGN  243 (461)
Q Consensus       168 ~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~-~~~~~~~---~~i~~L~~ll~~~~~~~~~~a~~  243 (461)
                      .++.....+...+.+..+++..+.++-++-..|..++..+-..++. ...+...   .++...-.++.+++--+++.++.
T Consensus       152 r~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQSlK  231 (341)
T 1upk_A          152 RHEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLK  231 (341)
T ss_dssp             TSHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHH
T ss_pred             HhHHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHHHH
Confidence            9999999999988889999999999999999999999987666554 4444442   35667778899999999999999


Q ss_pred             HHHHHhcCccchhhhhh----cCCHHHHHHHhCCCChhHHHHHHHHHHHhccCccc
Q 044999          244 TLGVVAAHVEYITPVAE----AGAIPLYAELLQGPDSTGKEISEDVFCILAVSEAN  295 (461)
Q Consensus       244 ~L~~l~~~~~~~~~~~~----~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~  295 (461)
                      .|+.+-.+..+...+.+    ..-+..++.+|++.+..++..|--++.-+..+|.-
T Consensus       232 LLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVANP~K  287 (341)
T 1upk_A          232 LLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNK  287 (341)
T ss_dssp             HHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSSC
T ss_pred             HHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeCCCC
Confidence            99999888666554443    24467788889999999999888888877666544

>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*

Probab=97.49  E-value=0.0056  Score=64.14  Aligned_cols=350  Identities=12%  Similarity=0.099  Sum_probs=187.9

Q ss_pred             CcHHHhHHHHHHHhhcCCH-HHHHHHHHHHHhhc----CCC--------c-----hhHHHh-----hHHHHHHhhccCCC
Q 044999            6 TNWEEAFNRFEQAVVSGSE-ALQVKALTKLARVS----KFA--------P-----QDILAA-----TIPILARLLGENNF   62 (461)
Q Consensus         6 ~~~~~~~~~l~~ll~~~~~-~~~~~a~~~l~~la----~~~--------~-----~~~l~~-----~i~~l~~~l~~~~~   62 (461)
                      ..|...++.++.++++++. .......+.|..+.    +..        .     ++.++.     +++....+|..  +
T Consensus       124 ~~Wp~~i~~l~~~~~~~~~~~~~~~~LriL~~i~EEv~~~~~~~~~~~~~r~~~lkd~m~~~~~~~i~~~~~~iL~~--~  201 (980)
T 3ibv_A          124 SNWNDFFASLQGVIAASSQSEFSNFYLKVLLSIGDEIADSLVLKTDVQIQKDNLVKDAIRANDMSDIVSFVYEMMLA--Y  201 (980)
T ss_dssp             TTCTTHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHH--H
T ss_pred             ccCchHHHHHHHHhcCCChhHHHHHHHHHHHHhHHHHHhcccccCHHHHhhhHHHHHHHHhccHHHHHHHHHHHHHH--H
Confidence            4799999999999987654 44555566666444    111        1     122222     24555555542  0


Q ss_pred             CCCCcHHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHhcCCCCCHHHHHHHHHHHHHHhccC--hhhHHHHHHcCC
Q 044999           63 SGNLTRSIQQAAAYCLKQIASQADGALATEIGQSGVINSVLRLFPQSDDSFRTVLVKCLRVFVTFG--NENRVIVARNGG  140 (461)
Q Consensus        63 ~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~l~~~~--~~~~~~~~~~g~  140 (461)
                      ....++.....+..++......   -....+...+.++.+.+++.+  +.++..|+.|+..+....  ++.+..+...=.
T Consensus       202 ~~~~~~~l~~~~L~~l~s~i~w---i~~~~i~~~~ll~~l~~~L~~--~~~r~~A~ecL~ei~~k~~~~~~k~~li~~l~  276 (980)
T 3ibv_A          202 SNAKNYGTVGLCLQVYAQWVSW---ININLIVNEPCMNLLYSFLQI--EELRCAACETMTEIVNKKMKPLEKLNLLNILN  276 (980)
T ss_dssp             HHTTCHHHHHHHHHHHHHHTTT---SCHHHHHCHHHHHHHHHHTTS--HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHH
T ss_pred             hccCCHHHHHHHHHHHHHHHhh---cCHHhhhcchHHHHHHHHcCC--hHHHHHHHHHHHHHHHcCCChhhHHHHHHHHh
Confidence            0113455666687888877763   223455567788889998865  788999999999777633  233333332201


Q ss_pred             HHHHHHHhc--CCChHHHHHHHHHHHHhh-------CCh-----HHHHHHHh--cCCHHHHHHHHcCCCHHHHHHHHHHH
Q 044999          141 LEIVIDLLN--SCNDGTRRYLLEILSALA-------LLR-----EVRRVLIC--LGGLRYLVEAVSFGSMVSRERACQAI  204 (461)
Q Consensus       141 i~~L~~ll~--~~~~~~~~~a~~~L~~l~-------~~~-----~~~~~~~~--~~~l~~l~~~l~~~~~~~~~~a~~~L  204 (461)
                      +...+..+.  ..|.+..+.-++.+..++       ..+     +.+.....  .+.++.++.++.+++.++-..++..+
T Consensus       277 L~~~~~~l~~~~~D~d~~~~la~L~~~~ge~l~~~~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~~~~~deVs~~t~~Fw  356 (980)
T 3ibv_A          277 LNLFFSKSQEQSTDPNFDEHVAKLINAQGVELVAIKSDPSELSPELKENCSFQLYNLFPYLIRYLSDDYDETSTAVFPFL  356 (980)
T ss_dssp             HHHHHCC-----CCHHHHHHHHHHHHHHHHHHHHHHTSCC--CHHHHHHHHHHHHHTHHHHHHHHTCSSHHHHHTTHHHH
T ss_pred             HHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHccCccccchhhhhhHHHHHHHHHHHHHHHhCCCchhHHHHHHHHH
Confidence            111111111  355565554444443332       111     11111111  25789999999999888888777776


Q ss_pred             HHhhcCchh-------HHHHHh--cCChHHHHHhcccC------C----------HHHHHHHHHHHHHHhcC--ccchhh
Q 044999          205 GLLAVTGRA-------RRLLVE--LGVIPGLVELFHIG------D----------WTTKLVAGNTLGVVAAH--VEYITP  257 (461)
Q Consensus       205 ~~l~~~~~~-------~~~~~~--~~~i~~L~~ll~~~------~----------~~~~~~a~~~L~~l~~~--~~~~~~  257 (461)
                      ..+....+.       ......  ...++.++.-++.+      +          .+.|.... .+......  ++..-.
T Consensus       357 ~~~l~~~~~~~~~~~~~~~~~~~l~~Ll~~li~k~~yp~d~~~~~~~d~ed~~~F~e~Rk~l~-~l~d~~~~l~~~~~l~  435 (980)
T 3ibv_A          357 SDLLVSLRKESSSKELSASLKEFLKSLLEAIIKKMKYDESQEWDDDPDSEEEAEFQEMRKKLK-IFQDTINSIDSSLFSS  435 (980)
T ss_dssp             HHHHHHHHHHTTSCCCCHHHHHHHHHHHHHHHHTTSCCTTCCCCCCSSSSTHHHHHHHHHHHH-HHHHHHHHHCHHHHHH
T ss_pred             HHHHHHHHhccccccccHHHHHHHHHHHHHHHHHccCCCccccccccchhHHHHHHHHHHHHH-HHHHHHHhcChHHHHH
Confidence            655432110       111111  11344444444411      1          02333333 22222211  111110


Q ss_pred             hhhcCCHHHHHHHhC---CCChhHHHHHHHHHHHhccCcc-----------cHHHHHHHHHHHhc-----cCCHHHHHHH
Q 044999          258 VAEAGAIPLYAELLQ---GPDSTGKEISEDVFCILAVSEA-----------NANAIAEHLVRILR-----EGDNEANAAA  318 (461)
Q Consensus       258 ~~~~g~i~~L~~ll~---~~~~~~~~~a~~~L~~l~~~~~-----------~~~~i~~~l~~ll~-----~~~~~~~~~a  318 (461)
                      ..-.-+.+.+.+.+.   +.++...+.++.+|..++..-.           ....+.+.+..++.     ..+|.++..+
T Consensus       436 ~~~~~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~  515 (980)
T 3ibv_A          436 YMYSAITSSLSTAATLSPENSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPHPLVQLLY  515 (980)
T ss_dssp             HHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCCCHHHHHHH
Confidence            000011122223332   2368889999999999865422           12234466667765     5689999999


Q ss_pred             HHHHHHhhCCCCchhHHhhcCCHHHHHHhhc------CCCHHHHHHHHHHHHHhcC
Q 044999          319 ADVLWDLAGYKHSVPVIRNSGAIPILVNLLR------GENDEVREKVSGAIAQLSY  368 (461)
Q Consensus       319 ~~~L~~l~~~~~~~~~l~~~g~i~~L~~ll~------~~~~~v~~~a~~~L~~l~~  368 (461)
                      +.+++..+..-..     ....++.++..+-      ++++.++..|+.++.++++
T Consensus       516 ~~~l~rys~~~~~-----~~~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~  566 (980)
T 3ibv_A          516 MEILVRYASFFDY-----ESAAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVK  566 (980)
T ss_dssp             HHHHHHTGGGGGT-----CCTTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhc-----CchhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHH
Confidence            9999998854211     2244555555543      4667899999999999997

>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}

Probab=97.41  E-value=0.007  Score=53.47  Aligned_cols=183  Identities=15%  Similarity=0.080  Sum_probs=127.6

Q ss_pred             HHHHHcCCCHHHHHHHHHHHHHhhcCchh---HHH-HHh-cCChHHHHHhcccCCHHHHHHHHHHHHHHhcC--c-c-ch
Q 044999          185 LVEAVSFGSMVSRERACQAIGLLAVTGRA---RRL-LVE-LGVIPGLVELFHIGDWTTKLVAGNTLGVVAAH--V-E-YI  255 (461)
Q Consensus       185 l~~~l~~~~~~~~~~a~~~L~~l~~~~~~---~~~-~~~-~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~--~-~-~~  255 (461)
                      +-+-|.+.++..|..|+..+..+......   ... +.. ....+.+-..+.+.+..++..++.++..++..  . . .+
T Consensus        14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~   93 (278)
T 4ffb_C           14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKN   93 (278)
T ss_dssp             HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCH
T ss_pred             HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhccc
Confidence            55778899999999999999887654432   111 111 23455666788899999999999999988764  1 1 11


Q ss_pred             hhh--hhcCCHHHHHHH-hCCCChhHHHHHHHHHHHhccCcccHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhCC--CC
Q 044999          256 TPV--AEAGAIPLYAEL-LQGPDSTGKEISEDVFCILAVSEANANAIAEHLVRILREGDNEANAAAADVLWDLAGY--KH  330 (461)
Q Consensus       256 ~~~--~~~g~i~~L~~l-l~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~l~~ll~~~~~~~~~~a~~~L~~l~~~--~~  330 (461)
                      ...  .-..+++.|++= +.+..+.++..+..++..+.........+.+.+...+.+.+|.++..++..|..+...  ..
T Consensus        94 ~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~~~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~fg~~  173 (278)
T 4ffb_C           94 AHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSITQSVELVIPFFEKKLPKLIAAAANCVYELMAAFGLT  173 (278)
T ss_dssp             HHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSSHHHHHHHGGGGGCSCHHHHHHHHHHHHHHHHHHTTT
T ss_pred             chhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhCCC
Confidence            111  123456777754 6777888999998888877655444445557788888999999999999999887632  21


Q ss_pred             c--hhHHhhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcC
Q 044999          331 S--VPVIRNSGAIPILVNLLRGENDEVREKVSGAIAQLSY  368 (461)
Q Consensus       331 ~--~~~l~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~  368 (461)
                      .  ..... ..+++.+..++.+.++.||..|..++..+..
T Consensus       174 ~~~~k~~l-~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~  212 (278)
T 4ffb_C          174 NVNVQTFL-PELLKHVPQLAGHGDRNVRSQTMNLIVEIYK  212 (278)
T ss_dssp             TCCHHHHH-HHHGGGHHHHHTCSSHHHHHHHHHHHHHHHT
T ss_pred             cCCchhHH-HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence            1  11111 1345668888999999999999999988876

>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}

Probab=97.38  E-value=0.0064  Score=51.26  Aligned_cols=211  Identities=13%  Similarity=0.157  Sum_probs=146.7

Q ss_pred             ChHHHHHHHHHHHHhh-CChHHHHHHHhc-CCHHHHHHHHc-------CC--CH---HHHHHHHHHHHHhhcCchhHHHH
Q 044999          152 NDGTRRYLLEILSALA-LLREVRRVLICL-GGLRYLVEAVS-------FG--SM---VSRERACQAIGLLAVTGRARRLL  217 (461)
Q Consensus       152 ~~~~~~~a~~~L~~l~-~~~~~~~~~~~~-~~l~~l~~~l~-------~~--~~---~~~~~a~~~L~~l~~~~~~~~~~  217 (461)
                      +++.|+.|+.-|..-- ..++....+... |.+..|++=+-       .+  +.   .-...|+..+..++.+++.+..|
T Consensus        14 ~p~~Re~AL~eLsk~Re~~~~La~~LW~S~Gtia~LLQEIisiYp~lspp~Lt~~~SnRVcnaLaLlQcvAshpetr~~F   93 (268)
T 2fv2_A           14 SPETRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALALLQCVASHPETRSAF   93 (268)
T ss_dssp             STTTHHHHHHHHHHHTTTCTTHHHHHHHSTTHHHHHHHHHHHTGGGBTTBCCCHHHHHHHHHHHHHHHHHHHCTTTHHHH
T ss_pred             CchhHHHHHHHHHHhhhccccHHHHHHhccCHHHHHHHHHHHHcccCCCcccCHHHHhHHHHHHHHHHHHHcCcchhhHH
Confidence            4556888887777654 334445555553 55555543221       11  11   23457777788899999999999


Q ss_pred             HhcCChHHHHHhcccCC-----HHHHHHHHHHHHHHhcC--ccchhhhhhcCCHHHHHHHhCCCChhHHHHHHHHHHHhc
Q 044999          218 VELGVIPGLVELFHIGD-----WTTKLVAGNTLGVVAAH--VEYITPVAEAGAIPLYAELLQGPDSTGKEISEDVFCILA  290 (461)
Q Consensus       218 ~~~~~i~~L~~ll~~~~-----~~~~~~a~~~L~~l~~~--~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~  290 (461)
                      .+.+..-.|...+...+     +..+-.++++++.+...  ++.-..+.+.+++|..+..+..++.--+..|..++..+-
T Consensus        94 l~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrime~GselSKtvAtfIlqKIL  173 (268)
T 2fv2_A           94 LAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELSKTVATFILQKIL  173 (268)
T ss_dssp             HHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred             HHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHHhhccHHHHHHHHHHHHHHh
Confidence            99988888888887332     46788899999999866  555667778899999999999999988989999888886


Q ss_pred             cCcccHHHHH--------------HHHHHHhccCCHHHHHHHHHHHHHhhCCCCchhHHhhc-------CCHHHHHHhhc
Q 044999          291 VSEANANAIA--------------EHLVRILREGDNEANAAAADVLWDLAGYKHSVPVIRNS-------GAIPILVNLLR  349 (461)
Q Consensus       291 ~~~~~~~~i~--------------~~l~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~-------g~i~~L~~ll~  349 (461)
                      .++.+-..+.              ..+..+...+++.+....+++-..|+.++..++.+.+.       |...   .+++
T Consensus       174 ~dd~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn~rar~aL~~~LP~~Lrd~tf~---~~l~  250 (268)
T 2fv2_A          174 LDDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNPRAREALRQCLPDQLKDTTFA---QVLK  250 (268)
T ss_dssp             HSHHHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTSHHHHHHHHHHSCGGGTSSTTH---HHHT
T ss_pred             ccchhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCHHHHHHHHHhCcHHhhChHHH---HHHh
Confidence            6665533322              34444556778999999999999999998887776632       2222   2222


Q ss_pred             CCCHHHHHHHHHHHHHh
Q 044999          350 GENDEVREKVSGAIAQL  366 (461)
Q Consensus       350 ~~~~~v~~~a~~~L~~l  366 (461)
                       +++.++..-...+.|+
T Consensus       251 -~D~~~k~~l~qLl~n~  266 (268)
T 2fv2_A          251 -DDTTTKRWLAQLVKNL  266 (268)
T ss_dssp             -SCHHHHHHHHHHHHHS
T ss_pred             -cCHHHHHHHHHHHHhc
Confidence             4566777666666665

>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A

Probab=97.21  E-value=0.25  Score=51.99  Aligned_cols=371  Identities=11%  Similarity=0.052  Sum_probs=188.2

Q ss_pred             CHHHHHHHHHHHHhhc-CCCchhHHHhhHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHhc-CCc-----------hh
Q 044999           23 SEALQVKALTKLARVS-KFAPQDILAATIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQ-ADG-----------AL   89 (461)
Q Consensus        23 ~~~~~~~a~~~l~~la-~~~~~~~l~~~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~-~~~-----------~~   89 (461)
                      ++.++.+.+.++..++ ..-+ ..+...++.+++.++.    +   +......+..|..+.+. .+.           ..
T Consensus       125 ~~~vinKLa~~La~I~k~~~P-~~Wp~fi~dLv~~~~~----~---~~~~~~~L~IL~~L~EEV~d~~~~~l~~~r~~~l  196 (1073)
T 3gjx_A          125 EKVYIGKLNMILVQILKQEWP-KHWPTFISDIVGASRT----S---ESLCQNNMVILKLLSEEVFDFSSGQITQVKAKHL  196 (1073)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTT-TTCTTHHHHHHHHHHH----C---HHHHHHHHHHHHHHHHHHTTSHHHHBCHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHhCh-hhccHHHHHHHHHhCC----C---HHHHHHHHHHHHHHHHHHHhcccccccHHHHHHH
Confidence            4666777777787777 2111 1122366777777764    2   22333367777777763 010           11


Q ss_pred             HHHHHhcCCHHHHHh----cCC-CCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHH-HHHhcCCChHHHHHHHHHH
Q 044999           90 ATEIGQSGVINSVLR----LFP-QSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIV-IDLLNSCNDGTRRYLLEIL  163 (461)
Q Consensus        90 ~~~~~~~~~l~~L~~----ll~-~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L-~~ll~~~~~~~~~~a~~~L  163 (461)
                      ++.+.+.  .+.+++    .+. ..++.+...+..++..+..=-+  -..+.+.+.++.+ ..++  .++..+..|+.+|
T Consensus       197 k~~L~~~--~~~Il~ll~~iL~~~~~~~lv~~~L~~L~~~~sWI~--i~~i~~~~ll~~L~~~~L--~~~~~r~aA~dcL  270 (1073)
T 3gjx_A          197 KDSMCNE--FSQIFQLCQFVMENSQNAPLVHATLETLLRFLNWIP--LGYIFETKLISTLIYKFL--NVPMFRNVSLKCL  270 (1073)
T ss_dssp             HHHHHHT--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSC--THHHHSSSHHHHHHHHTS--SSHHHHHHHHHHH
T ss_pred             HHHHHHH--HHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHhcC--HHHhccchHHHHHHHHhc--CChHHHHHHHHHH
Confidence            2233322  233333    332 4566666666777776554211  2356677778877 4665  4678999999999


Q ss_pred             HHhh-CC-hHHHHHHHh--cCCHHHHHHHHc-------------CCCHHHHHHHHHHHHHhhcCchhHHHHHh-cC----
Q 044999          164 SALA-LL-REVRRVLIC--LGGLRYLVEAVS-------------FGSMVSRERACQAIGLLAVTGRARRLLVE-LG----  221 (461)
Q Consensus       164 ~~l~-~~-~~~~~~~~~--~~~l~~l~~~l~-------------~~~~~~~~~a~~~L~~l~~~~~~~~~~~~-~~----  221 (461)
                      ..+. .+ ++....+..  ...+..+-.++.             +.+.+....-++++..+....-  ..+.. .+    
T Consensus       271 ~eIv~k~~~~~~~~~~~lf~~~~~~i~~ilp~~~~l~~~y~~~~~~d~e~~~~l~~~f~~~~e~~~--~lIe~~p~~~~~  348 (1073)
T 3gjx_A          271 TEIAGVSVSQYEEQFETLFTLTMMQLKQMLPLNTNIRLAYSNGKDDEQNFIQNLSLFLCTFLKEHG--QLLEKRLNLREA  348 (1073)
T ss_dssp             HHHHHSCSGGGHHHHHHHHHHHHHHHHHHSCTTSCHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHH--HHHHHCGGGHHH
T ss_pred             HHHHhccccchHHHHHHHHHHHHHHHHHhcCCchhHHHHHhccchhhHHHHHHHHHHHHHHHHHHH--HHHhcCccchHH
Confidence            9987 32 222222211  112222222221             1122333344444444332221  11111 01    


Q ss_pred             ---ChHHHHHhcccCCHHHHHHHHHHHHHHhcC--ccc--------------------hhhhhhcCCHHHHHH----HhC
Q 044999          222 ---VIPGLVELFHIGDWTTKLVAGNTLGVVAAH--VEY--------------------ITPVAEAGAIPLYAE----LLQ  272 (461)
Q Consensus       222 ---~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~--~~~--------------------~~~~~~~g~i~~L~~----ll~  272 (461)
                         ++..++.+-..++.++.+.+......+...  .+.                    +..+. ..++..|..    -+.
T Consensus       349 l~~~l~~ll~~s~~~d~ei~kitf~fW~~L~~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~y-~~i~~~L~~vlI~~m~  427 (1073)
T 3gjx_A          349 LMEALHYMLLVSEVEETEIFKICLEYWNHLAAELYRESPFSTSASPLLSGSQHFDIPPRRQLY-LTVLSKVRLLMVSRMA  427 (1073)
T ss_dssp             HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHCCSCCCCSSCTTSSCCSCSCHHHHTT-HHHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccchhHHHHH-HHHHHHHHHHHHHhcC
Confidence               344455555677888888877776666543  110                    11010 011222222    222


Q ss_pred             CCCh-------------h---------HHHHHHHHHHHhcc-C-cccHHHHHHHHHHHhcc--CCHHHHHHHHHHHHHhh
Q 044999          273 GPDS-------------T---------GKEISEDVFCILAV-S-EANANAIAEHLVRILRE--GDNEANAAAADVLWDLA  326 (461)
Q Consensus       273 ~~~~-------------~---------~~~~a~~~L~~l~~-~-~~~~~~i~~~l~~ll~~--~~~~~~~~a~~~L~~l~  326 (461)
                      .++.             +         .....-.+|..++. . .+....+.+.+.+.+.+  .++...+.++++++.++
T Consensus       428 ~P~ev~i~e~e~ge~~re~~~d~~~~~ly~~mrd~L~~lt~l~~~~~~~i~~~~l~~~~~~~~~sW~~lea~~~aigaIa  507 (1073)
T 3gjx_A          428 KPEEVLVVENDQGEVVREFMKDTDSINLYKNMRETLVYLTHLDYVDTEIIMTKKLQNQVNGTEWSWKNLNTLCWAIGSIS  507 (1073)
T ss_dssp             CSCCEEEEECSSSCEEEEECSSCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHTSCCCCHHHHHHHHHHHHHTT
T ss_pred             CCccccccCcccchHHHHHHhhcchHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCCHHHHhHHHHHHHHHH
Confidence            2210             0         11112223333321 1 22222233666555544  36999999999999998


Q ss_pred             CCCC-chhHHhhcCCHHHHHHhhcCCC-----HHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhccCCCHHHHHHH
Q 044999          327 GYKH-SVPVIRNSGAIPILVNLLRGEN-----DEVREKVSGAIAQLSYNEADRVALADAGAVPIMIELLHDESEELRDNA  400 (461)
Q Consensus       327 ~~~~-~~~~l~~~g~i~~L~~ll~~~~-----~~v~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a  400 (461)
                      ..-. ..+.-.-..+++.|+.+...+.     +.++...+++++..++.-.....+.+ ..+..|++.+.+.++.++..|
T Consensus       508 g~~~~~~E~~~Lp~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h~~~L~-~vl~~L~~~m~~~~~~vq~aA  586 (1073)
T 3gjx_A          508 GAMHEEDEKRFLVTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHWKFLK-TVVNKLFEFMHETHDGVQDMA  586 (1073)
T ss_dssp             TSSCHHHHHHHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHH-HHHHHHHHHTTCCSTTHHHHH
T ss_pred             CcCCcccccchHHHHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHhCHHHHH-HHHHHHHHHHhcCCHHHHHHH
Confidence            5422 2222222346777777765442     23444455777777662111222322 146667777788899999999


Q ss_pred             HHHHHHhcCCC
Q 044999          401 AESLINFSEDP  411 (461)
Q Consensus       401 ~~~L~~l~~~~  411 (461)
                      +.++..++.+.
T Consensus       587 ~~af~~i~~~C  597 (1073)
T 3gjx_A          587 CDTFIKIAQKC  597 (1073)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHHH
Confidence            99999998653

>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B

Probab=97.19  E-value=0.31  Score=51.25  Aligned_cols=386  Identities=10%  Similarity=0.065  Sum_probs=202.9

Q ss_pred             CcHHHhHHHHHHHhhcCCHHHHHHHHHHHHhhc----C---CC---ch-----hHHHh----hHHHHHHhhccCCCCCCC
Q 044999            6 TNWEEAFNRFEQAVVSGSEALQVKALTKLARVS----K---FA---PQ-----DILAA----TIPILARLLGENNFSGNL   66 (461)
Q Consensus         6 ~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~la----~---~~---~~-----~~l~~----~i~~l~~~l~~~~~~~~~   66 (461)
                      ..|...++.++.+++++ +.........|..|.    +   ..   .|     +.+..    +++.+.+.|..    . .
T Consensus       134 ~~Wp~~l~dL~~~l~~~-~~~~~~~L~iL~~L~EEV~~~~~~~l~~~r~~~lk~~l~~~~~~I~~ll~~iL~~----~-~  207 (1023)
T 4hat_C          134 QNWPEFIPELIGSSSSS-VNVCENNMIVLKLLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQ----G-A  207 (1023)
T ss_dssp             TTCTTHHHHHHHHTTTC-HHHHHHHHHHHHHHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH----C-S
T ss_pred             hhchHHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhC----C-C
Confidence            46999999999998764 344555666666655    1   10   11     12222    55555666664    2 2


Q ss_pred             cHHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHH-hcCCCCCHHHHHHHHHHHHHHhccC---h--hhHHHHHHc--
Q 044999           67 TRSIQQAAAYCLKQIASQADGALATEIGQSGVINSVL-RLFPQSDDSFRTVLVKCLRVFVTFG---N--ENRVIVARN--  138 (461)
Q Consensus        67 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~-~ll~~~~~~~~~~~~~~l~~l~~~~---~--~~~~~~~~~--  138 (461)
                      +++....+..++......   -....+...+.++.+. .++  .++..+..|+.|+..+....   +  .....+...  
T Consensus       208 ~~~l~~~~L~~l~s~l~W---I~i~~i~~~~ll~~l~~~~L--~~~~~r~~A~ecL~eIv~~~~~~~~~~~~~~l~~lf~  282 (1023)
T 4hat_C          208 SSSLIVATLESLLRYLHW---IPYRYIYETNILELLSTKFM--TSPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQ  282 (1023)
T ss_dssp             SCHHHHHHHHHHHHHTTT---SCTHHHHSSSHHHHHHTHHH--HSHHHHHHHHHHHHHHHTSCCCSSCHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHh---CCHHHhcchhHHHHHHHHHc--CCHHHHHHHHHHHHHHHccccCCchHHHHHHHHHHHH
Confidence            345666688888888764   2234566778888888 777  46778999999999877522   1  122111110  


Q ss_pred             CCHHHH-----------HHHh---cCCChHHHHHHHHHHHHhhC--------ChHHHHHHHhcCCHHHHHHHHcCCCHHH
Q 044999          139 GGLEIV-----------IDLL---NSCNDGTRRYLLEILSALAL--------LREVRRVLICLGGLRYLVEAVSFGSMVS  196 (461)
Q Consensus       139 g~i~~L-----------~~ll---~~~~~~~~~~a~~~L~~l~~--------~~~~~~~~~~~~~l~~l~~~l~~~~~~~  196 (461)
                      +.+..+           ...+   ...|.+....-+..+..+..        +++.+..+ . .++..++..-..++.++
T Consensus       283 ~~l~~l~~~i~p~~~~l~~~~~~~~~~D~e~~~~l~~l~~~~~e~~~~li~~~~~~~~~l-~-~~l~~Ll~~~~~~d~ei  360 (1023)
T 4hat_C          283 NTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELL-L-NAHQYLIQLSKIEEREL  360 (1023)
T ss_dssp             HHHHHHHHHTCCTTCCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHGGGGTSCGGGHHHH-H-HHHHHHHHHTTSSCHHH
T ss_pred             HHHHHHHHHhCCCcchHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHhCCcchhHHH-H-HHHHHHHHhhCCCcHHH
Confidence            111111           1111   11233444444444443331        11112211 1 12345555555667777


Q ss_pred             HHHHHHHHHHhhcC---chhHHHHHh---cCChHHHHHhcccCC--------------------HH-HHH-HHHHHHHHH
Q 044999          197 RERACQAIGLLAVT---GRARRLLVE---LGVIPGLVELFHIGD--------------------WT-TKL-VAGNTLGVV  248 (461)
Q Consensus       197 ~~~a~~~L~~l~~~---~~~~~~~~~---~~~i~~L~~ll~~~~--------------------~~-~~~-~a~~~L~~l  248 (461)
                      -..++..=..++..   .+.+..+..   ...++.++..+..+.                    .+ ..- ..-.+|..+
T Consensus       361 ~~~tl~FW~~L~~~l~~e~~~~~~~~~~~~~L~~vli~km~~P~e~~ive~d~~~~~~e~~~d~d~~~~f~~~Rd~L~~l  440 (1023)
T 4hat_C          361 FKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREVLVYL  440 (1023)
T ss_dssp             HHHHHHHHHHHHHHHTTSTTTGGGGHHHHHHHHHHHHHSCCCCTTCCEEECTTSCEEECSSCCGGGHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCccHHHHhccchHHHHHHHHHHHHHHHH
Confidence            66666654444321   001111110   124445555444322                    00 010 111334333


Q ss_pred             hcC--ccchhhhhhcCCHHHHHHHhCC--CChhHHHHHHHHHHHhccCccc--HHHHH----HHHHHHhcc-----CCHH
Q 044999          249 AAH--VEYITPVAEAGAIPLYAELLQG--PDSTGKEISEDVFCILAVSEAN--ANAIA----EHLVRILRE-----GDNE  313 (461)
Q Consensus       249 ~~~--~~~~~~~~~~g~i~~L~~ll~~--~~~~~~~~a~~~L~~l~~~~~~--~~~i~----~~l~~ll~~-----~~~~  313 (461)
                      +.-  ++.-..     .++.+.+.+..  .++..++.++.+++.++.....  .....    +.|++++..     ....
T Consensus       441 ~~l~~~~~~~~-----~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~  515 (1023)
T 4hat_C          441 THLNVIDTEEI-----MISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAV  515 (1023)
T ss_dssp             HHHCHHHHHHH-----HHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHH
T ss_pred             hccCHHHHHHH-----HHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHH
Confidence            321  111111     13444444443  4799999999999999765543  22222    777777753     2234


Q ss_pred             HHHHHHHHHHHhhCCCCchhHHhhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCChhhHHHHHh------CCChHHHHH
Q 044999          314 ANAAAADVLWDLAGYKHSVPVIRNSGAIPILVNLLRGENDEVREKVSGAIAQLSYNEADRVALAD------AGAVPIMIE  387 (461)
Q Consensus       314 ~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~------~~~i~~L~~  387 (461)
                      ++..++++++..+.--....... ...+..|.+.+.+.++.++..|++++.++|.  +++..+..      ...++.+++
T Consensus       516 v~~t~~~~lGry~~wl~~~~~~L-~~vl~~L~~~l~~~~~~v~~~A~~al~~l~~--~c~~~l~~~~~~e~~p~~~~il~  592 (1023)
T 4hat_C          516 VASDIMYVVGQYPRFLKAHWNFL-RTVILKLFEFMHETHEGVQDMACDTFIKIVQ--KCKYHFVIQQPRESEPFIQTIIR  592 (1023)
T ss_dssp             HHHHHHHHHHTCHHHHHHCHHHH-HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHH--HHTHHHHSCCTTCSSCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhccHHHH-HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHH--HHHHHhhccCCCCCchhHHHHHH
Confidence            55567788877764211111111 1245556666777789999999999999995  34445542      113444444


Q ss_pred             ----hccCCCHHHHHHHHHHHHHhcCCCc
Q 044999          388 ----LLHDESEELRDNAAESLINFSEDPL  412 (461)
Q Consensus       388 ----ll~~~~~~~~~~a~~~L~~l~~~~~  412 (461)
                          ....-.+.-+..+..++..+...-.
T Consensus       593 ~l~~~~~~l~~~~~~~lyeai~~vi~~~~  621 (1023)
T 4hat_C          593 DIQKTTADLQPQQVHTFYKACGIIISEER  621 (1023)
T ss_dssp             THHHHHTTSCHHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHHHHHhCC
Confidence                3334567777788888888876543

>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}

Probab=97.18  E-value=0.0066  Score=51.18  Aligned_cols=171  Identities=17%  Similarity=0.126  Sum_probs=124.8

Q ss_pred             HHHHHHHHHHHhhCChHHHHHHHhcCCHHHHHHHHcCCC-----HHHHHHHHHHHHHhhcCchh--HHHHHhcCChHHHH
Q 044999          155 TRRYLLEILSALALLREVRRVLICLGGLRYLVEAVSFGS-----MVSRERACQAIGLLAVTGRA--RRLLVELGVIPGLV  227 (461)
Q Consensus       155 ~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~-----~~~~~~a~~~L~~l~~~~~~--~~~~~~~~~i~~L~  227 (461)
                      -...|+..+-.++.+++.|..|++.++.-.|..+|...+     +-+|-.++++++.+...++.  -..+.+.+++|..+
T Consensus        72 RVcnaLaLlQcvAshpetr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCL  151 (268)
T 2fv2_A           72 RVCNALALLQCVASHPETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCL  151 (268)
T ss_dssp             HHHHHHHHHHHHHHCTTTHHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHH
T ss_pred             HHHHHHHHHHHHHcCcchhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHH
Confidence            346777788888899999999999998878888887553     46899999999999876554  66778899999999


Q ss_pred             HhcccCCHHHHHHHHHHHHHHhcCccchhhhhhc--------CCHHHHH-HHhCCCChhHHHHHHHHHHHhccCcccHHH
Q 044999          228 ELFHIGDWTTKLVAGNTLGVVAAHVEYITPVAEA--------GAIPLYA-ELLQGPDSTGKEISEDVFCILAVSEANANA  298 (461)
Q Consensus       228 ~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~--------g~i~~L~-~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~  298 (461)
                      ..++.++.-.+..|...+..+-.++..-..+...        .++..++ .+.+.+++.+.++..++-..|+.++..+..
T Consensus       152 rime~GselSKtvAtfIlqKIL~dd~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn~rar~a  231 (268)
T 2fv2_A          152 RIMESGSELSKTVATFILQKILLDDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNPRAREA  231 (268)
T ss_dssp             HHHHHSCHHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTSHHHHHH
T ss_pred             HHHhhccHHHHHHHHHHHHHHhccchhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCHHHHHH
Confidence            9999999999999988888887664443333221        1222222 233566888999999999999999988877


Q ss_pred             HHHHHHHHh--------ccCCHHHHHHHHHHHHHh
Q 044999          299 IAEHLVRIL--------REGDNEANAAAADVLWDL  325 (461)
Q Consensus       299 i~~~l~~ll--------~~~~~~~~~~a~~~L~~l  325 (461)
                      +...+=..|        -.+++.++..-...+.|+
T Consensus       232 L~~~LP~~Lrd~tf~~~l~~D~~~k~~l~qLl~n~  266 (268)
T 2fv2_A          232 LRQCLPDQLKDTTFAQVLKDDTTTKRWLAQLVKNL  266 (268)
T ss_dssp             HHHHSCGGGTSSTTHHHHTSCHHHHHHHHHHHHHS
T ss_pred             HHHhCcHHhhChHHHHHHhcCHHHHHHHHHHHHhc
Confidence            761111112        134666666666666665

>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}

Probab=97.15  E-value=0.011  Score=52.31  Aligned_cols=181  Identities=12%  Similarity=0.159  Sum_probs=121.3

Q ss_pred             hHHHHHhcccCCHHHHHHHHHHHHHHhcC-cc--chhhhhh--cCCHHHHHHHhCCCChhHHHHHHHHHHHhccCcc---
Q 044999          223 IPGLVELFHIGDWTTKLVAGNTLGVVAAH-VE--YITPVAE--AGAIPLYAELLQGPDSTGKEISEDVFCILAVSEA---  294 (461)
Q Consensus       223 i~~L~~ll~~~~~~~~~~a~~~L~~l~~~-~~--~~~~~~~--~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~---  294 (461)
                      +| |-+-+.+.++..|..|+..|..+... +.  .......  ....+.+...+.+.+..++..++.++..++....   
T Consensus        12 lp-l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~   90 (278)
T 4ffb_C           12 LP-LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSS   90 (278)
T ss_dssp             CC-HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---
T ss_pred             CC-HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhh
Confidence            44 66788899999999999999887654 11  1111111  1345667788888999999999999988753211   


Q ss_pred             -cHH-------HHHHHHHH-HhccCCHHHHHHHHHHHHHhhCCCCchhHHhhcCCHHHHHHhhcCCCHHHHHHHHHHHHH
Q 044999          295 -NAN-------AIAEHLVR-ILREGDNEANAAAADVLWDLAGYKHSVPVIRNSGAIPILVNLLRGENDEVREKVSGAIAQ  365 (461)
Q Consensus       295 -~~~-------~i~~~l~~-ll~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~  365 (461)
                       ...       .+.+.++. .+.+..+.++..+..++..++........     .++.+...+.+.+|.++..++..|..
T Consensus        91 ~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~~~-----~~e~l~~~l~~Knpkv~~~~l~~l~~  165 (278)
T 4ffb_C           91 LKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSITQ-----SVELVIPFFEKKLPKLIAAAANCVYE  165 (278)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSSHH-----HHHHHGGGGGCSCHHHHHHHHHHHHH
T ss_pred             cccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcHHH-----HHHHHHHHHhccCHHHHHHHHHHHHH
Confidence             111       11255554 46778899999999988888754322222     24557778889999999999888887


Q ss_pred             hcCC--hhh--HHHHHhCCChHHHHHhccCCCHHHHHHHHHHHHHhcCC
Q 044999          366 LSYN--EAD--RVALADAGAVPIMIELLHDESEELRDNAAESLINFSED  410 (461)
Q Consensus       366 l~~~--~~~--~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~  410 (461)
                      +...  ...  ...... .+++.+..++.+.++.||..|..++..+-..
T Consensus       166 ~l~~fg~~~~~~k~~l~-~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~  213 (278)
T 4ffb_C          166 LMAAFGLTNVNVQTFLP-ELLKHVPQLAGHGDRNVRSQTMNLIVEIYKV  213 (278)
T ss_dssp             HHHHHTTTTCCHHHHHH-HHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC
T ss_pred             HHHHhCCCcCCchhHHH-HHHHHHHHHHhCCcHHHHHHHHHHHHHHHHH
Confidence            7641  111  111111 2456677788999999999999999888544

>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*

Probab=97.12  E-value=0.031  Score=49.40  Aligned_cols=199  Identities=11%  Similarity=0.050  Sum_probs=149.8

Q ss_pred             HHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHhhCC-h----HHHHHHHhc-CCHHHHHHHHcCCCHHHHHHHHHHHHH
Q 044999          133 VIVARNGGLEIVIDLLNSCNDGTRRYLLEILSALALL-R----EVRRVLICL-GGLRYLVEAVSFGSMVSRERACQAIGL  206 (461)
Q Consensus       133 ~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~-~----~~~~~~~~~-~~l~~l~~~l~~~~~~~~~~a~~~L~~  206 (461)
                      ..+...+.+..|+..+..-+.+.|..+..+..++... .    .....+... .++..|+..-.  ++++-..+-..|+.
T Consensus        72 ~ei~~~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gYe--~~diAl~~G~mLRe  149 (341)
T 1upk_A           72 QELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYE--SPEIALNCGIMLRE  149 (341)
T ss_dssp             HHHHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGG--STTTHHHHHHHHHH
T ss_pred             HHHHHhCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhhc--cchhHhHHHHHHHH
Confidence            3345557788888889888999999999998888732 2    234455442 24444444333  44556667777888


Q ss_pred             hhcCchhHHHHHhcCChHHHHHhcccCCHHHHHHHHHHHHHHh-cCccchhhhhhc---CCHHHHHHHhCCCChhHHHHH
Q 044999          207 LAVTGRARRLLVELGVIPGLVELFHIGDWTTKLVAGNTLGVVA-AHVEYITPVAEA---GAIPLYAELLQGPDSTGKEIS  282 (461)
Q Consensus       207 l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~-~~~~~~~~~~~~---g~i~~L~~ll~~~~~~~~~~a  282 (461)
                      +..+....+.+...+.+..+.+.++.++-++...|..++..+- .+......+...   .++...-.++.+++.-.++.+
T Consensus       150 cir~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQS  229 (341)
T 1upk_A          150 CIRHEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQS  229 (341)
T ss_dssp             HHTSHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHH
T ss_pred             HHHhHHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHH
Confidence            8888877888888888899999999999999999999988764 333333333332   456778889999999999999


Q ss_pred             HHHHHHhccCcccHHHHH---------HHHHHHhccCCHHHHHHHHHHHHHhhCCCCchh
Q 044999          283 EDVFCILAVSEANANAIA---------EHLVRILREGDNEANAAAADVLWDLAGYKHSVP  333 (461)
Q Consensus       283 ~~~L~~l~~~~~~~~~i~---------~~l~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~  333 (461)
                      +..|+.+-.+..+...+.         ..++.+|++.+..++..|..+..-+..+|..-.
T Consensus       230 lKLLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVANP~K~~  289 (341)
T 1upk_A          230 LKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNKTQ  289 (341)
T ss_dssp             HHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSSCCH
T ss_pred             HHHHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeCCCCCh
Confidence            999999988888766655         778889999999999999999999988765433

>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}

Probab=97.03  E-value=0.038  Score=47.71  Aligned_cols=176  Identities=10%  Similarity=0.027  Sum_probs=117.2

Q ss_pred             HHHHHHcCCCHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhc----ccCCHHHHHHHHHHHHHHhcC---ccchh
Q 044999          184 YLVEAVSFGSMVSRERACQAIGLLAVTGRARRLLVELGVIPGLVELF----HIGDWTTKLVAGNTLGVVAAH---VEYIT  256 (461)
Q Consensus       184 ~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll----~~~~~~~~~~a~~~L~~l~~~---~~~~~  256 (461)
                      .+...+-+.+...+..++..|.......+  ..+..  .+..++.++    .+.+..+...++..|..+...   .+.+-
T Consensus        50 ~~~~~lfs~d~k~~~~ale~L~~~l~~~~--~~~~~--~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~  125 (266)
T 2of3_A           50 SLMSQLFHKDFKQHLAALDSLVRLADTSP--RSLLS--NSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPM  125 (266)
T ss_dssp             HHHHHHTCSCHHHHHHHHHHHHHHHHHCH--HHHHH--THHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHhhhCh--HHHHH--HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccc
Confidence            34444555666777777777766543222  12111  233344433    367888888888888776432   11111


Q ss_pred             hhh-hcCCHHHHHHHhCCCChhHHHHHHHHHHHhccCcccHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCchhHH
Q 044999          257 PVA-EAGAIPLYAELLQGPDSTGKEISEDVFCILAVSEANANAIAEHLVRILREGDNEANAAAADVLWDLAGYKHSVPVI  335 (461)
Q Consensus       257 ~~~-~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~l~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~l  335 (461)
                      .-. ..-++|.|++-+.+....+|..+-.++..+... .....+.+.+.+-+++.++.++..++..+..+-......   
T Consensus       126 ~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v-~~~~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~---  201 (266)
T 2of3_A          126 SQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDV-VGPLKMTPMLLDALKSKNARQRSECLLVIEYYITNAGIS---  201 (266)
T ss_dssp             CHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHH-HCHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSG---
T ss_pred             hHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHH-CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCC---
Confidence            111 124589999999888889999988888777532 123334478888889999999999999999987421111   


Q ss_pred             hhcCCH---HHHHHhhcCCCHHHHHHHHHHHHHhcC
Q 044999          336 RNSGAI---PILVNLLRGENDEVREKVSGAIAQLSY  368 (461)
Q Consensus       336 ~~~g~i---~~L~~ll~~~~~~v~~~a~~~L~~l~~  368 (461)
                       ....+   +.+..++.+.+..||..|+.++..+..
T Consensus       202 -~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~  236 (266)
T 2of3_A          202 -PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFK  236 (266)
T ss_dssp             -GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHH
T ss_pred             -ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence             13467   999999999999999999998887766

>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}

Probab=96.87  E-value=0.025  Score=48.81  Aligned_cols=174  Identities=10%  Similarity=0.054  Sum_probs=114.4

Q ss_pred             HHHHhcCCCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHH----hcCCChHHHHHHHHHHHHhhCC-----h
Q 044999          100 NSVLRLFPQSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDL----LNSCNDGTRRYLLEILSALALL-----R  170 (461)
Q Consensus       100 ~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~l----l~~~~~~~~~~a~~~L~~l~~~-----~  170 (461)
                      +.+...|-+.+..-+..+...+......++   ..+..  .++.+++.    +.+.++.+...++.+|..+...     .
T Consensus        49 ~~~~~~lfs~d~k~~~~ale~L~~~l~~~~---~~~~~--~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y  123 (266)
T 2of3_A           49 VSLMSQLFHKDFKQHLAALDSLVRLADTSP---RSLLS--NSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTET  123 (266)
T ss_dssp             HHHHHHHTCSCHHHHHHHHHHHHHHHHHCH---HHHHH--THHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHhhhCh---HHHHH--HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccc
Confidence            344555556677656667766665544333   22221  23333442    3367888888888888776411     0


Q ss_pred             HHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhcccCCHHHHHHHHHHHHHHhc
Q 044999          171 EVRRVLICLGGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRARRLLVELGVIPGLVELFHIGDWTTKLVAGNTLGVVAA  250 (461)
Q Consensus       171 ~~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~  250 (461)
                      .....- ..-.+|.|++-+.+..+.+|..+-.++..+....+.      ..+++.+..-+++.+...+..++..+..+-.
T Consensus       124 ~~~~~e-a~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~------~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~  196 (266)
T 2of3_A          124 PMSQEE-VSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGP------LKMTPMLLDALKSKNARQRSECLLVIEYYIT  196 (266)
T ss_dssp             CCCHHH-HHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCH------HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred             cchHHH-HHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCCH------HHHHHHHHHHHccCCHHHHHHHHHHHHHHHH
Confidence            111110 012689999999999999999888888777543222      2256778888889999999999988888865


Q ss_pred             CccchhhhhhcCCH---HHHHHHhCCCChhHHHHHHHHHHHh
Q 044999          251 HVEYITPVAEAGAI---PLYAELLQGPDSTGKEISEDVFCIL  289 (461)
Q Consensus       251 ~~~~~~~~~~~g~i---~~L~~ll~~~~~~~~~~a~~~L~~l  289 (461)
                      .....    ....+   +.+..++.+.+..+|..|..++..+
T Consensus       197 ~~G~~----~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~  234 (266)
T 2of3_A          197 NAGIS----PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVAC  234 (266)
T ss_dssp             HHCSG----GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHH
T ss_pred             hcCCC----ccccccchHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence            42221    13457   9999999999999999888887754

>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5

Probab=96.85  E-value=0.0012  Score=56.74  Aligned_cols=141  Identities=19%  Similarity=0.143  Sum_probs=95.1

Q ss_pred             HHHHhcCCCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHhhCChHHHHHHHhc
Q 044999          100 NSVLRLFPQSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLNSCNDGTRRYLLEILSALALLREVRRVLICL  179 (461)
Q Consensus       100 ~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~  179 (461)
                      +.+..+++++++.|+..++..+                  ..+.+..+++++++.+|..++..   +.            
T Consensus       101 ~~L~~ll~D~d~~VR~~aA~~l------------------~~~~L~~L~~D~d~~VR~~aA~~---l~------------  147 (244)
T 1lrv_A          101 EQLSALMFDEDREVRITVADRL------------------PLEQLEQMAADRDYLVRAYVVQR---IP------------  147 (244)
T ss_dssp             GGGGGTTTCSCHHHHHHHHHHS------------------CTGGGGGGTTCSSHHHHHHHHHH---SC------------
T ss_pred             HHHHHHHcCCCHHHHHHHHHhC------------------CHHHHHHHHcCCCHHHHHHHHHh---cC------------
Confidence            4566777777777777766532                  12245667788889999888873   21            


Q ss_pred             CCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhcccCCHHHHHHHHHHHHHHhcCccchhhhh
Q 044999          180 GGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRARRLLVELGVIPGLVELFHIGDWTTKLVAGNTLGVVAAHVEYITPVA  259 (461)
Q Consensus       180 ~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~  259 (461)
                        .+.+..+++++++.+|..++..   +              ..+.+..+++++++.++..++..+              
T Consensus       148 --~~~l~~l~~D~d~~VR~~aa~~---l--------------~~~ll~~ll~D~d~~VR~aaa~~l--------------  194 (244)
T 1lrv_A          148 --PGRLFRFMRDEDRQVRKLVAKR---L--------------PEESLGLMTQDPEPEVRRIVASRL--------------  194 (244)
T ss_dssp             --GGGGGGTTTCSCHHHHHHHHHH---S--------------CGGGGGGSTTCSSHHHHHHHHHHC--------------
T ss_pred             --HHHHHHHHcCCCHHHHHHHHHc---C--------------CHHHHHHHHcCCCHHHHHHHHHhC--------------
Confidence              1234456678889999888774   1              124555677888888888877542              


Q ss_pred             hcCCHHHHHHHhCCCChhHHHHHHHHHHHhccCcccHHHHHHHHHHHhccCCHHHHHHHHHHH
Q 044999          260 EAGAIPLYAELLQGPDSTGKEISEDVFCILAVSEANANAIAEHLVRILREGDNEANAAAADVL  322 (461)
Q Consensus       260 ~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~l~~ll~~~~~~~~~~a~~~L  322 (461)
                         ..+.|..++.++++.||..++..+.-            +.+..+ .+.++.|+..+...|
T Consensus       195 ---~~~~L~~Ll~D~d~~VR~~aa~~l~~------------~~L~~L-~D~~~~VR~aa~~~L  241 (244)
T 1lrv_A          195 ---RGDDLLELLHDPDWTVRLAAVEHASL------------EALREL-DEPDPEVRLAIAGRL  241 (244)
T ss_dssp             ---CGGGGGGGGGCSSHHHHHHHHHHSCH------------HHHHHC-CCCCHHHHHHHHCCC
T ss_pred             ---CHHHHHHHHcCCCHHHHHHHHHcCCH------------HHHHHc-cCCCHHHHHHHHHHh
Confidence               13567777888888888888888771            334444 777888888776544

>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}

Probab=96.67  E-value=0.013  Score=55.25  Aligned_cols=213  Identities=11%  Similarity=0.068  Sum_probs=140.7

Q ss_pred             CHHHHHHHHcCCCHHHHHHHHHHHHHhhcCchh---HHHHHhcCChHHHHHhcc----------cCCHHHHHHHHHHHHH
Q 044999          181 GLRYLVEAVSFGSMVSRERACQAIGLLAVTGRA---RRLLVELGVIPGLVELFH----------IGDWTTKLVAGNTLGV  247 (461)
Q Consensus       181 ~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~---~~~~~~~~~i~~L~~ll~----------~~~~~~~~~a~~~L~~  247 (461)
                      ..+.|+.-|-++.+++|-.|+.+|+.+......   +..-.+.+..-.++..+.          .--..+|+.++.+|+.
T Consensus       175 fcE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLGa  254 (800)
T 3oc3_A          175 FFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLSR  254 (800)
T ss_dssp             TTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHHHHHHHH
Confidence            455666666788999999999999998755432   110001122333333332          1124799999999999


Q ss_pred             HhcC-ccchhhhhhcCCHHHHHHHhCCCChhHHHHHHHHHHHhccCcccHHHHHHHHHHHhccCCHHHHHHHHHHHHHhh
Q 044999          248 VAAH-VEYITPVAEAGAIPLYAELLQGPDSTGKEISEDVFCILAVSEANANAIAEHLVRILREGDNEANAAAADVLWDLA  326 (461)
Q Consensus       248 l~~~-~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~l~~ll~~~~~~~~~~a~~~L~~l~  326 (461)
                      + .+ ++.      ..++..++..+....++++..++-.|..+...-..-..+.+.++..|.+.+++|+..|+.+|.-++
T Consensus       255 L-~hLp~e------~~IL~qLV~~l~~~~WEVRHGGLLGLKYL~DLL~~Ld~Vv~aVL~GL~D~DDDVRAVAAetLiPIA  327 (800)
T 3oc3_A          255 I-YPLIGP------NDIIEQLVGFLDSGDWQVQFSGLIALGYLKEFVEDKDGLCRKLVSLLSSPDEDIKLLSAELLCHFP  327 (800)
T ss_dssp             H-TTTSCS------CCHHHHHTTGGGCSCHHHHHHHHHHHHHTGGGCCCHHHHHHHHHHHTTCSSHHHHHHHHHHHTTSC
T ss_pred             H-HhCChh------HHHHHHHHhhcCCCCeeehhhhHHHHHHHHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHhhhhc
Confidence            9 76 333      344666666667789999999999999882111113334488889999999999999999999998


Q ss_pred             CCCCchhHHhhcCCHHHHHHhhcCCCH--HHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhccCCCHHHHHHHHHHH
Q 044999          327 GYKHSVPVIRNSGAIPILVNLLRGEND--EVREKVSGAIAQLSYNEADRVALADAGAVPIMIELLHDESEELRDNAAESL  404 (461)
Q Consensus       327 ~~~~~~~~l~~~g~i~~L~~ll~~~~~--~v~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L  404 (461)
                       .++....     ++..+++.|.+.++  .-.......|+.|+..+..  .-.....+|.|.-.+++.-..||..+..+|
T Consensus       328 -~p~~l~~-----LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~--a~~dp~LVPRL~PFLRHtITSVR~AVL~TL  399 (800)
T 3oc3_A          328 -ITDSLDL-----VLEKCWKNIESEELISVSKTSNLSLLTKIYRENPE--LSIPPERLKDIFPCFTSPVPEVRTSILNMV  399 (800)
T ss_dssp             -CSSTHHH-----HHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTT--CCCCSGGGGGTGGGGTCSSHHHHHHHHHHT
T ss_pred             -chhhHHH-----HHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcc--cccChHHHHHHHhhhcCCcHHHHHHHHHHH
Confidence             3333222     34456666664321  1233444556666652221  111236688899999999999999999999


Q ss_pred             HHhc
Q 044999          405 INFS  408 (461)
Q Consensus       405 ~~l~  408 (461)
                      ..+.
T Consensus       400 ~tfL  403 (800)
T 3oc3_A          400 KNLS  403 (800)
T ss_dssp             TTCC
T ss_pred             HHHH
Confidence            8888

>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}

Probab=96.43  E-value=0.14  Score=45.30  Aligned_cols=154  Identities=12%  Similarity=0.026  Sum_probs=98.6

Q ss_pred             HHHHHHHhcCCChHHHHHHHHHHHHhhCChHHHHHHHhcCCHHHHH----HHHcC-CCHHHHHHHHHHHHHhhcCchhHH
Q 044999          141 LEIVIDLLNSCNDGTRRYLLEILSALALLREVRRVLICLGGLRYLV----EAVSF-GSMVSRERACQAIGLLAVTGRARR  215 (461)
Q Consensus       141 i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~----~~l~~-~~~~~~~~a~~~L~~l~~~~~~~~  215 (461)
                      +..+.+++.-+ .+.+..++..++-+..++.....+.+.+.-..++    ..+.+ ..+..+..+++++.|+-.+...+.
T Consensus       105 l~~l~kil~WP-~~~~fPvLDLlRl~~l~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~~~~g~~  183 (304)
T 3ebb_A          105 LQILWKAINCP-EDIVFPALDILRLSIKHPSVNENFCNEKEGAQFSSHLINLLNPKGKPANQLLALRTFCNCFVGQAGQK  183 (304)
T ss_dssp             HHHHHHHHTSC-TTTCHHHHHHHHHHTTSHHHHHHHHSTTTHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHGGGSHHHHH
T ss_pred             HHHHHHHHcCC-HHhHHHHHHHHHHHHcCccHHHHhhccccchHHHHHHHHhcCCCCChHHHHHHHHHHHHccCCchhHH
Confidence            45666666332 3566777888877777777776666543333333    33332 256678999999999999888876


Q ss_pred             HHHh--cCChHHHHHhcccCCHHHHHHHHHHHHHHhcC-ccchhhhhhcCCHHHHHHHhCC-CChhHHHHHHHHHHHhcc
Q 044999          216 LLVE--LGVIPGLVELFHIGDWTTKLVAGNTLGVVAAH-VEYITPVAEAGAIPLYAELLQG-PDSTGKEISEDVFCILAV  291 (461)
Q Consensus       216 ~~~~--~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~g~i~~L~~ll~~-~~~~~~~~a~~~L~~l~~  291 (461)
                      .+..  ..+++.+...+.+.+..++..++..+.|++.. ...+..=....++..+..++.. .++|....++.+|++|..
T Consensus       184 ~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~~~ll~~l~~il~~~~d~EalyR~LvALGtL~~  263 (304)
T 3ebb_A          184 LMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEGKAQCLSLISTILEVVQDLEATFRLLVALGTLIS  263 (304)
T ss_dssp             HHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHh
Confidence            6654  23445555555567889999999999999875 1111100011134444455543 478899999999999976


Q ss_pred             Cccc
Q 044999          292 SEAN  295 (461)
Q Consensus       292 ~~~~  295 (461)
                      .+..
T Consensus       264 ~~~~  267 (304)
T 3ebb_A          264 DDSN  267 (304)
T ss_dssp             TCHH
T ss_pred             CChh
Confidence            5543

>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}

Probab=96.13  E-value=0.081  Score=46.88  Aligned_cols=184  Identities=11%  Similarity=0.108  Sum_probs=112.2

Q ss_pred             HHHHHHHhCCCChhHHHHHHHHHHHhccCcccHHHHH---------HHHHHHhcc-CCHHHHHHHHHHHHHhhCCCCchh
Q 044999          264 IPLYAELLQGPDSTGKEISEDVFCILAVSEANANAIA---------EHLVRILRE-GDNEANAAAADVLWDLAGYKHSVP  333 (461)
Q Consensus       264 i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~i~---------~~l~~ll~~-~~~~~~~~a~~~L~~l~~~~~~~~  333 (461)
                      +..+..++ .-+.+.+..++..++-+..++.....+.         ..+...+.+ ..+..+..++++++|+-.++..+.
T Consensus       105 l~~l~kil-~WP~~~~fPvLDLlRl~~l~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~~~~g~~  183 (304)
T 3ebb_A          105 LQILWKAI-NCPEDIVFPALDILRLSIKHPSVNENFCNEKEGAQFSSHLINLLNPKGKPANQLLALRTFCNCFVGQAGQK  183 (304)
T ss_dssp             HHHHHHHH-TSCTTTCHHHHHHHHHHTTSHHHHHHHHSTTTHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHGGGSHHHHH
T ss_pred             HHHHHHHH-cCCHHhHHHHHHHHHHHHcCccHHHHhhccccchHHHHHHHHhcCCCCChHHHHHHHHHHHHccCCchhHH
Confidence            45555555 3344555566666666555554433322         334444433 357778999999999999888777


Q ss_pred             HHhhc--CCHHHHHHhhcCCCHHHHHHHHHHHHHhcCC-hhhHHHHHhCCChHHHHHhcc-CCCHHHHHHHHHHHHHhcC
Q 044999          334 VIRNS--GAIPILVNLLRGENDEVREKVSGAIAQLSYN-EADRVALADAGAVPIMIELLH-DESEELRDNAAESLINFSE  409 (461)
Q Consensus       334 ~l~~~--g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~-~~~~~~~~~~~~i~~L~~ll~-~~~~~~~~~a~~~L~~l~~  409 (461)
                      .+...  .+++.+...+.+.+..++..++..+.|++.. ...+..=....++..+..+++ ..+++....++.+|.+|..
T Consensus       184 ~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~~~ll~~l~~il~~~~d~EalyR~LvALGtL~~  263 (304)
T 3ebb_A          184 LMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEGKAQCLSLISTILEVVQDLEATFRLLVALGTLIS  263 (304)
T ss_dssp             HHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHh
Confidence            76642  2344555555567888999999999999982 110000001113344444453 4689999999999999998


Q ss_pred             CCcchHHHHHhhCCchHHhHHHHHHHhhhchhHHHHHHHHHhHh
Q 044999          410 DPLQHERISEAIGIPSFQSMQSRLTRIRASDDLMARSMRRMSIE  453 (461)
Q Consensus       410 ~~~~~~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~  453 (461)
                      .+.....+.+..+.....+...   .  .+.+..+.++++..+.
T Consensus       264 ~~~~~~~lak~l~~~~~v~~~~---~--~~~~~kv~~~~~~~~~  302 (304)
T 3ebb_A          264 DDSNAVQLAKSLGVDSQIKKYS---S--VSEPAKVSECCRFILN  302 (304)
T ss_dssp             TCHHHHHHHHHTTHHHHGGGGG---G--CCSSHHHHHHHHHHHT
T ss_pred             CChhHHHHHHHcCHHHHHHHHH---h--CCCchhHHHHHHHHHH
Confidence            7665666666555554332222   1  1245668888877664

>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}

Probab=95.83  E-value=0.1  Score=43.76  Aligned_cols=141  Identities=11%  Similarity=0.040  Sum_probs=99.9

Q ss_pred             HHHHHhcccCCHHHHHHHHHHHHHHhcCccchhhhhhcCCHHHHHH-HhCCCChhHHHHHHHHHHHhcc--CcccHHHHH
Q 044999          224 PGLVELFHIGDWTTKLVAGNTLGVVAAHVEYITPVAEAGAIPLYAE-LLQGPDSTGKEISEDVFCILAV--SEANANAIA  300 (461)
Q Consensus       224 ~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~-ll~~~~~~~~~~a~~~L~~l~~--~~~~~~~i~  300 (461)
                      +....+.+++..++|..|+..|+.+ .  ..      ...++.+.. +..+.+..|++.+..++..+..  +++.   ..
T Consensus        74 ~la~~L~~~~~deVR~~Av~lLg~~-~--~~------~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe~---~l  141 (240)
T 3l9t_A           74 KLAFLAYQSDVYQVRMYAVFLFGYL-S--KD------KEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYKK---AL  141 (240)
T ss_dssp             HHHHHHHTCSSHHHHHHHHHHHHHT-T--TS------HHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTTT---TH
T ss_pred             HHHHHHHhCcchHHHHHHHHHHHhc-c--Cc------HHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHHH---HH
Confidence            4444455677789999999988877 2  11      123566766 5567789999999999998863  4432   33


Q ss_pred             HHHHHHhccCCHHHHHHHHHHHHHhhCCCCchhHHhhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcC-ChhhHHHHHh
Q 044999          301 EHLVRILREGDNEANAAAADVLWDLAGYKHSVPVIRNSGAIPILVNLLRGENDEVREKVSGAIAQLSY-NEADRVALAD  378 (461)
Q Consensus       301 ~~l~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~-~~~~~~~~~~  378 (461)
                      +.+.....++++.+|..|...+.-.+..+..+..  -.-+++.|-.+..+++.-|+....+.|..+++ +|+....+++
T Consensus       142 ~~~~~W~~d~n~~VRR~Ase~~rpW~~~~~~k~d--p~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~Pd~V~~~~~  218 (240)
T 3l9t_A          142 PIIDEWLKSSNLHTRRAATEGLRIWTNRPYFKEN--PNEAIRRIADLKEDVSEYVRKSVGNALRDISKKFPDLVKIELK  218 (240)
T ss_dssp             HHHHHHHHCSSHHHHHHHHHHTCSGGGSTTTTTC--HHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHhcCCCHHHHHHHHHhhHHHhccchhhcC--HHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhCHHHHHHHHH
Confidence            6778889999999999999888765543211111  11145666777778889999999999999999 8886555544

>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A

Probab=95.69  E-value=0.21  Score=46.48  Aligned_cols=96  Identities=19%  Similarity=0.214  Sum_probs=59.1

Q ss_pred             HHHhHHHHHHHhhcCCHHHHHHHHHHHHhhc-CCCchhHHHhhHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHhcCC
Q 044999            8 WEEAFNRFEQAVVSGSEALQVKALTKLARVS-KFAPQDILAATIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQAD   86 (461)
Q Consensus         8 ~~~~~~~l~~ll~~~~~~~~~~a~~~l~~la-~~~~~~~l~~~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~   86 (461)
                      .++++..++.++.++|..+|.+|++.|..+| +    +.+.++.+.|.++|+.      +++......-.+|..+... +
T Consensus        63 ~~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~----~~i~kiaDvL~QlLqt------dd~~E~~~V~~sL~sllk~-D  131 (507)
T 3u0r_A           63 ADSAINAQLDLCEDEDVSIRRQAIKELPQFATG----ENLPRVADILTQLLQT------DDSAEFNLVNNALLSIFKM-D  131 (507)
T ss_dssp             HHHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT----TCHHHHHHHHHHHTTC------CCHHHHHHHHHHHHHHHHH-C
T ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHhhHHHhhh----hhhhhHHHHHHHHHhc------cchHHHHHHHHHHHHHHhc-C
Confidence            5677788888888888888888888888888 4    2245577777777775      4444444455566666553 1


Q ss_pred             chhHHHHHhcCCHHHHHhcCCCCCHHHHHHHHHHHH
Q 044999           87 GALATEIGQSGVINSVLRLFPQSDDSFRTVLVKCLR  122 (461)
Q Consensus        87 ~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~  122 (461)
                      ..        +.+..+...+..+++.++..+...|.
T Consensus       132 pk--------~tl~~lf~~i~~~~e~~Rer~lkFi~  159 (507)
T 3u0r_A          132 AK--------GTLGGLFSQILQGEDIVRERAIKFLS  159 (507)
T ss_dssp             HH--------HHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred             hH--------HHHHHHHHHHcccchHHHHHHHHHHH
Confidence            11        12233333333346666777766665

>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}

Probab=95.38  E-value=0.74  Score=39.02  Aligned_cols=144  Identities=11%  Similarity=0.085  Sum_probs=97.1

Q ss_pred             HHHHHhcCChHHHHHhccc----C-------CHHHHHHHHHHHHHHhcCccchhhhhhc-CCHHHHHHHhCCCChhHHHH
Q 044999          214 RRLLVELGVIPGLVELFHI----G-------DWTTKLVAGNTLGVVAAHVEYITPVAEA-GAIPLYAELLQGPDSTGKEI  281 (461)
Q Consensus       214 ~~~~~~~~~i~~L~~ll~~----~-------~~~~~~~a~~~L~~l~~~~~~~~~~~~~-g~i~~L~~ll~~~~~~~~~~  281 (461)
                      .+.| ..+|+..|+..+..    .       +...+..++.||..+..+......+..+ +.+..+...+.++++.++..
T Consensus        37 v~~F-~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L~s~~~~~r~~  115 (233)
T 2f31_A           37 VQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMID  115 (233)
T ss_dssp             HHHH-HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTSSHHHHHHHHTSSSHHHHHHTTCCTTSHHHHHH
T ss_pred             HHHH-HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhCChHHHHHHHcCcHHHHHHHHHhCCCCchHHHH
Confidence            3344 35667777776651    1       3456778899999998886655655554 67889999999889999999


Q ss_pred             HHHHHHHhccCcc--c-HHHHH---------------HHHHHHhc-cCCHHHHHHHHHHHHHhhCCCCc-------hhHH
Q 044999          282 SEDVFCILAVSEA--N-ANAIA---------------EHLVRILR-EGDNEANAAAADVLWDLAGYKHS-------VPVI  335 (461)
Q Consensus       282 a~~~L~~l~~~~~--~-~~~i~---------------~~l~~ll~-~~~~~~~~~a~~~L~~l~~~~~~-------~~~l  335 (461)
                      ++..|.-++..++  + ...+.               ..+++.++ +.+.+.+..++..+-.+...++.       +..+
T Consensus       116 ~leLL~~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef  195 (233)
T 2f31_A          116 AAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSEL  195 (233)
T ss_dssp             HHHHHHHHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Confidence            9998887765443  4 33333               66777776 44678888888888888866543       3444


Q ss_pred             hhcCCHHHHHHhhcCCCHHHHHH
Q 044999          336 RNSGAIPILVNLLRGENDEVREK  358 (461)
Q Consensus       336 ~~~g~i~~L~~ll~~~~~~v~~~  358 (461)
                      ...|..+.+-.+-...++.+..+
T Consensus       196 ~~~Gl~~il~~l~~~~~~~L~~Q  218 (233)
T 2f31_A          196 MRLGLHQVLQELREIENEDMKVQ  218 (233)
T ss_dssp             HHTTHHHHHHHHHHCCCHHHHHH
T ss_pred             HHCChHHHHHHHhccCCHHHHHH
Confidence            46666666655544556655444

>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A

Probab=95.37  E-value=1.8  Score=40.39  Aligned_cols=248  Identities=13%  Similarity=0.052  Sum_probs=147.7

Q ss_pred             HHhcCCCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHhhCChHHHHHHHhcCC
Q 044999          102 VLRLFPQSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLNSCNDGTRRYLLEILSALALLREVRRVLICLGG  181 (461)
Q Consensus       102 L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~  181 (461)
                      ++...+ +++..++.++..+......-++.+..-     +..+++++++.+..+|..|++.|..+|.+ +....     +
T Consensus        34 Il~~~k-g~~k~K~LaaQ~I~kffk~FP~l~~~A-----i~a~lDLcEDed~~IR~qaik~Lp~~ck~-~~i~k-----i  101 (507)
T 3u0r_A           34 ILDGVK-GGTKEKRLAAQFIPKFFKHFPELADSA-----INAQLDLCEDEDVSIRRQAIKELPQFATG-ENLPR-----V  101 (507)
T ss_dssp             HHHGGG-SCHHHHHHHHHHHHHHGGGCGGGHHHH-----HHHHHHHHTCSSHHHHHHHHHHGGGGCCT-TCHHH-----H
T ss_pred             HHHhcC-CCHHHHHHHHHHHHHHHhhChhhHHHH-----HHHHHHHHhcccHHHHHHHHHhhHHHhhh-hhhhh-----H
Confidence            444433 467778899999988887777765543     66799999999999999999999999977 44444     3


Q ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhcccCCHHHHHHHHHHHHHHhcC--ccchhhhh
Q 044999          182 LRYLVEAVSFGSMVSRERACQAIGLLAVTGRARRLLVELGVIPGLVELFHIGDWTTKLVAGNTLGVVAAH--VEYITPVA  259 (461)
Q Consensus       182 l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~--~~~~~~~~  259 (461)
                      ...|+++|+.+++......-.+|..+...++.       +.+..+...+.++++.+|+.++..|..=...  .+....=.
T Consensus       102 aDvL~QlLqtdd~~E~~~V~~sL~sllk~Dpk-------~tl~~lf~~i~~~~e~~Rer~lkFi~~kl~~l~~~~l~~E~  174 (507)
T 3u0r_A          102 ADILTQLLQTDDSAEFNLVNNALLSIFKMDAK-------GTLGGLFSQILQGEDIVRERAIKFLSTKLKTLPDEVLTKEV  174 (507)
T ss_dssp             HHHHHHHTTCCCHHHHHHHHHHHHHHHHHCHH-------HHHHHHHHHHHHSCHHHHHHHHHHHHHHGGGSCTTTSCHHH
T ss_pred             HHHHHHHHhccchHHHHHHHHHHHHHHhcChH-------HHHHHHHHHHcccchHHHHHHHHHHHHHHhhcchhhccHHH
Confidence            56789999988876666555555555433322       2455566666666788999888777654332  22222222


Q ss_pred             hcCCHHHHHHHhCCCChhHHHHHHHHHHHh--ccCcccHHHHHHHHHHHh------ccCCHHHHHHHHHHHH----HhhC
Q 044999          260 EAGAIPLYAELLQGPDSTGKEISEDVFCIL--AVSEANANAIAEHLVRIL------REGDNEANAAAADVLW----DLAG  327 (461)
Q Consensus       260 ~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l--~~~~~~~~~i~~~l~~ll------~~~~~~~~~~a~~~L~----~l~~  327 (461)
                      +.-++..+...+.+-..+--......|..+  ......+.++++.+.+..      ...+++....-+.++.    .++.
T Consensus       175 E~~i~~~ikK~L~DVT~~EF~L~m~lL~~lkl~~t~~g~qeLv~ii~eQa~L~~~f~~sD~e~vdRlI~C~~~ALP~FS~  254 (507)
T 3u0r_A          175 EELILTESKKVLEDVTGEEFVLFMKILSGLKSLQTVSGRQQLVELVAEQADLEQTFNPSDPDCVDRLLQCTRQAVPLFSK  254 (507)
T ss_dssp             HHHHHHHHHHHTTSCCHHHHHHHHHHHHTSGGGSSHHHHHHHHHHHHHHHTTTSCCCSSCHHHHHHHHHHHHHHGGGCBT
T ss_pred             HHHHHHHHHHHhccccHHHHHHHHHHHHhcccccCchHHHHHHHHHHHHHhccCCCCCcCHHHHHHHHHHHHHHHHHhcc
Confidence            223455666777655554445555666655  233444556664444442      2235554444444333    3333


Q ss_pred             CCCchhH--HhhcCCHHHHHHhhcCC-CHHHHHHHHHHHHHhcC
Q 044999          328 YKHSVPV--IRNSGAIPILVNLLRGE-NDEVREKVSGAIAQLSY  368 (461)
Q Consensus       328 ~~~~~~~--l~~~g~i~~L~~ll~~~-~~~v~~~a~~~L~~l~~  368 (461)
                      .......  .+...++|.+-.+-... .++.+...+++++-++.
T Consensus       255 ~v~StkFv~y~~~kIlP~l~~L~e~~~~~~~kL~LLK~lAE~s~  298 (507)
T 3u0r_A          255 NVHSTRFVTYFCEQVLPNLGTLTTPVEGLDIQLEVLKLLAEMSS  298 (507)
T ss_dssp             TBCCHHHHHHHHHHTGGGTTCCCCC--CCCHHHHHHHHHHHHHT
T ss_pred             CCChHHHHHHHHHhhccchhhccccccchHHHHHHHHHHHHHcc
Confidence            3222211  11223555443332221 22367788888888887

>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*

Probab=95.08  E-value=0.33  Score=42.92  Aligned_cols=115  Identities=15%  Similarity=0.122  Sum_probs=91.7

Q ss_pred             HHHHHHHHHHhhCChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCchhHH-HHHhcCChHHHHHhcc-cC
Q 044999          156 RRYLLEILSALALLREVRRVLICLGGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRARR-LLVELGVIPGLVELFH-IG  233 (461)
Q Consensus       156 ~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~-~~~~~~~i~~L~~ll~-~~  233 (461)
                      ...+...|.-+..+.+....+++.+|+..+....+-++.++.+..+..|...+....-+. .+  ...+|.++..+. ++
T Consensus       260 vtR~FDLL~LLmHdSnAIDGFVk~DGv~~I~TvinYpN~~l~RaG~KLLLQVSDaksL~~t~L--~e~LPFi~~~i~~h~  337 (619)
T 3c2g_A          260 IIRTFDLLGLLLHDSDAIDGFVRSDGVGAITTVVQYPNNDLIRAGCKLLLQVSDAKALAKTPL--ENILPFLLRLIEIHP  337 (619)
T ss_dssp             HHHHHHHHHHHCCSHHHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHTTCGGGGTSCC--TTHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHhcccccccceeecccceeEEEEeecCCcHHHHhhhheeeeecchHHHhhccc--cccchHHHHHhccCC
Confidence            344555555555788888999999999999999999999999999999998876654421 11  235788888777 77


Q ss_pred             CHHHHHHHHHHHHHHhcC-ccchhhhhhcCCHHHHHHHhC
Q 044999          234 DWTTKLVAGNTLGVVAAH-VEYITPVAEAGAIPLYAELLQ  272 (461)
Q Consensus       234 ~~~~~~~a~~~L~~l~~~-~~~~~~~~~~g~i~~L~~ll~  272 (461)
                      +.++.....+.|.|...+ ...++..+..|+++.|...+.
T Consensus       338 eDdvvYSGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~  377 (619)
T 3c2g_A          338 DDEVIYSGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIIS  377 (619)
T ss_dssp             CHHHHHHHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHH
T ss_pred             CcceEEecchHHHHHHhcccchHHHHhccCcHHHHHHHHh
Confidence            889999999999999988 677777888899999988763

>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}

Probab=95.07  E-value=0.48  Score=39.71  Aligned_cols=135  Identities=15%  Similarity=0.123  Sum_probs=96.5

Q ss_pred             HHHHHHHhCCCChhHHHHHHHHHHHhccCcccHHHHHHHHHH-HhccCCHHHHHHHHHHHHHhhC--CCCchhHHhhcCC
Q 044999          264 IPLYAELLQGPDSTGKEISEDVFCILAVSEANANAIAEHLVR-ILREGDNEANAAAADVLWDLAG--YKHSVPVIRNSGA  340 (461)
Q Consensus       264 i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~l~~-ll~~~~~~~~~~a~~~L~~l~~--~~~~~~~l~~~g~  340 (461)
                      ++....+.+++..++|..|+..|..+ .  .. ..+.+.+.. +-...+..|++.++.++..++.  +++.        .
T Consensus        73 ~~la~~L~~~~~deVR~~Av~lLg~~-~--~~-~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe~--------~  140 (240)
T 3l9t_A           73 KKLAFLAYQSDVYQVRMYAVFLFGYL-S--KD-KEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYKK--------A  140 (240)
T ss_dssp             HHHHHHHHTCSSHHHHHHHHHHHHHT-T--TS-HHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTTT--------T
T ss_pred             HHHHHHHHhCcchHHHHHHHHHHHhc-c--Cc-HHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHHH--------H
Confidence            45556666777789999999988887 2  22 334466666 4456689999999999999984  3331        6


Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhccCCCHHHHHHHHHHHHHhcCCCc
Q 044999          341 IPILVNLLRGENDEVREKVSGAIAQLSYNEADRVALADAGAVPIMIELLHDESEELRDNAAESLINFSEDPL  412 (461)
Q Consensus       341 i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~  412 (461)
                      ++.+..+..++++.+|+.|+..+.-.+..+..+..  ..-+++.|..+..+++..||....+.|..++....
T Consensus       141 l~~~~~W~~d~n~~VRR~Ase~~rpW~~~~~~k~d--p~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~P  210 (240)
T 3l9t_A          141 LPIIDEWLKSSNLHTRRAATEGLRIWTNRPYFKEN--PNEAIRRIADLKEDVSEYVRKSVGNALRDISKKFP  210 (240)
T ss_dssp             HHHHHHHHHCSSHHHHHHHHHHTCSGGGSTTTTTC--HHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHhcCCCHHHHHHHHHhhHHHhccchhhcC--HHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhCH
Confidence            67888999999999999998876543331111000  00135666667788999999999999999997754

>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*

Probab=95.00  E-value=1.6  Score=40.05  Aligned_cols=144  Identities=11%  Similarity=0.074  Sum_probs=99.3

Q ss_pred             HHHHHhcCChHHHHHhcc-----------cCCHHHHHHHHHHHHHHhcCccchhhhhhc-CCHHHHHHHhCCCChhHHHH
Q 044999          214 RRLLVELGVIPGLVELFH-----------IGDWTTKLVAGNTLGVVAAHVEYITPVAEA-GAIPLYAELLQGPDSTGKEI  281 (461)
Q Consensus       214 ~~~~~~~~~i~~L~~ll~-----------~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~-g~i~~L~~ll~~~~~~~~~~  281 (461)
                      .+.|. .+|+..|+.++.           ..+...+..++.||..+..+......+..+ ..+..+...+.+..+.++..
T Consensus       103 V~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalmN~~~G~~~vl~~~~~i~~l~~~L~s~~~~~~~~  181 (383)
T 3eg5_B          103 VQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMID  181 (383)
T ss_dssp             HHHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHTSSHHHHHHHHTCSSHHHHHHHTCCTTSHHHHHH
T ss_pred             HHHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHhcchhhHHHHHcChHHHHHHHHHhCCCchHHHHH
Confidence            34454 567788887775           123467788899999998886666656554 77899999999999999999


Q ss_pred             HHHHHHHhccCcc--c-HHHHH---------------HHHHHHhcc-CCHHHHHHHHHHHHHhhCCCCc-------hhHH
Q 044999          282 SEDVFCILAVSEA--N-ANAIA---------------EHLVRILRE-GDNEANAAAADVLWDLAGYKHS-------VPVI  335 (461)
Q Consensus       282 a~~~L~~l~~~~~--~-~~~i~---------------~~l~~ll~~-~~~~~~~~a~~~L~~l~~~~~~-------~~~l  335 (461)
                      ++..|.-++..++  + ...+.               ..+++.|++ .+.+.+..++..+-.+...++.       +..+
T Consensus       182 aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef  261 (383)
T 3eg5_B          182 AAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSEL  261 (383)
T ss_dssp             HHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHccCcHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence            9999988865543  3 33332               677888876 5788888888888888866433       3444


Q ss_pred             hhcCCHHHHHHhhcCCCHHHHHH
Q 044999          336 RNSGAIPILVNLLRGENDEVREK  358 (461)
Q Consensus       336 ~~~g~i~~L~~ll~~~~~~v~~~  358 (461)
                      ...|..+.+-.+=...++.+..+
T Consensus       262 ~~~Gl~~il~~lr~~~~~~L~~Q  284 (383)
T 3eg5_B          262 MRLGLHQVLQELREIENEDMKVQ  284 (383)
T ss_dssp             HHTTHHHHHHHHTTSCCHHHHHH
T ss_pred             HHCChHHHHHHHhcCCChhHHHH
Confidence            46666666665433445555443

>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1

Probab=94.19  E-value=4.5  Score=42.77  Aligned_cols=161  Identities=12%  Similarity=0.094  Sum_probs=99.1

Q ss_pred             hHHHHHhcccCCHHHHHHHHHHHHHHhcC-ccchhhhhhcCCHHHHHHHhCCC----ChhHHHHHHHHHHHhc----cCc
Q 044999          223 IPGLVELFHIGDWTTKLVAGNTLGVVAAH-VEYITPVAEAGAIPLYAELLQGP----DSTGKEISEDVFCILA----VSE  293 (461)
Q Consensus       223 i~~L~~ll~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~g~i~~L~~ll~~~----~~~~~~~a~~~L~~l~----~~~  293 (461)
                      +..+.+++.++.....+ |+.+|...... ....+      .+..+..+++++    ++.++..+..+++.|.    ...
T Consensus       358 ~~~i~~~i~~~~l~~~e-a~~~l~~~~~~~~Pt~e------~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~  430 (1056)
T 1lsh_A          358 LLFLKRTLASEQLTSAE-ATQIVASTLSNQQATRE------SLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANT  430 (1056)
T ss_dssp             HHHHHHHHHTTCSCHHH-HHHHHHHHHHTCCCCHH------HHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHcCCCCHHH-HHHHHHHhhccCCCCHH------HHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccC
Confidence            44555555555433333 33444433222 12222      256777777653    5677777777777763    221


Q ss_pred             -c----cHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCchhHHhhcCCHHHHHHhhcC-------CCHHHHHHHHH
Q 044999          294 -A----NANAIAEHLVRILREGDNEANAAAADVLWDLAGYKHSVPVIRNSGAIPILVNLLRG-------ENDEVREKVSG  361 (461)
Q Consensus       294 -~----~~~~i~~~l~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~ll~~-------~~~~v~~~a~~  361 (461)
                       .    ....+.+.+.+.+...+.+.+..++.+|+|+...          ..++.|..++..       ...+++..|++
T Consensus       431 ~~c~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~p----------~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~  500 (1056)
T 1lsh_A          431 VSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQP----------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIM  500 (1056)
T ss_dssp             SSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCG----------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCh----------hHHHHHHHhhcCccccccccchHHHHHHHH
Confidence             1    1223336666667777888899999999999642          356667777642       24578889999


Q ss_pred             HHHHhcC-ChhhHHHHHhCCChHHHHHhc--cCCCHHHHHHHHHHHHHhc
Q 044999          362 AIAQLSY-NEADRVALADAGAVPIMIELL--HDESEELRDNAAESLINFS  408 (461)
Q Consensus       362 ~L~~l~~-~~~~~~~~~~~~~i~~L~~ll--~~~~~~~~~~a~~~L~~l~  408 (461)
                      +|.+++. .+..        +-+.+.++.  ...++++|..|...|....
T Consensus       501 ALr~~~~~~p~~--------v~~il~~i~~n~~e~~EvRiaA~~~Lm~t~  542 (1056)
T 1lsh_A          501 ALRNIAKRDPRK--------VQEIVLPIFLNVAIKSELRIRSCIVFFESK  542 (1056)
T ss_dssp             TTTTGGGTCHHH--------HHHHHHHHHHCTTSCHHHHHHHHHHHHHTC
T ss_pred             HHHHhhhhchHH--------HHHHHHHHhcCCCCChHHHHHHHHHHHHHC
Confidence            9999986 3331        234566666  4578999998888886543

>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}

Probab=93.68  E-value=7.5  Score=41.84  Aligned_cols=286  Identities=12%  Similarity=0.038  Sum_probs=152.1

Q ss_pred             CHHHHHHHHHHHHhhc-CCCchhHHHhhHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHhcC----CchhHHHHHhcC
Q 044999           23 SEALQVKALTKLARVS-KFAPQDILAATIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQA----DGALATEIGQSG   97 (461)
Q Consensus        23 ~~~~~~~a~~~l~~la-~~~~~~~l~~~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~----~~~~~~~~~~~~   97 (461)
                      +...|..|-..|..+. ++.       ....+...|..    .+.++.++..|+..|.+.....    +++.+..+ ...
T Consensus        26 ~~~~r~~Ae~~L~~~~~~p~-------~~~~~~~~L~~----~s~~~~vR~~A~~~Lk~~I~~~W~~l~~e~k~~I-r~~   93 (1204)
T 3a6p_A           26 TQRYRLEALKFCEEFKEKCP-------ICVPCGLRLAE----KTQVAIVRHFGLQILEHVVKFRWNGMSRLEKVYL-KNS   93 (1204)
T ss_dssp             CHHHHHHHHHHHHHHHHHCT-------THHHHHHHHTS----TTSCHHHHHHHHHHHHHHHHHSGGGSCHHHHHHH-HHH
T ss_pred             ChHHHHHHHHHHHHHHhCch-------HHHHHHHHHHc----cCCCHHHHHHHHHHHHHHHHHhcccCCHHHHHHH-HHH
Confidence            7778888888887766 332       22333333322    3344556666888998887530    12233333 333


Q ss_pred             CHHHHHhcCC---CCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHhhCC-----
Q 044999           98 VINSVLRLFP---QSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLNSCNDGTRRYLLEILSALALL-----  169 (461)
Q Consensus        98 ~l~~L~~ll~---~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~-----  169 (461)
                      .+..+.+...   ..++.++...+.++..++..+-..+    =.+.++.++.++++ ++..++.++.+|..+++.     
T Consensus        94 ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~~----Wp~ll~~L~~~~~~-~~~~~e~~L~iL~~L~Eev~~~~  168 (1204)
T 3a6p_A           94 VMELIANGTLNILEEENHIKDALSRIVVEMIKREWPQH----WPDMLIELDTLSKQ-GETQTELVMFILLRLAEDVVTFQ  168 (1204)
T ss_dssp             HHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTTT----CTTHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHTSC
T ss_pred             HHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCccc----chHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHcccc
Confidence            4444444322   1457778888888887765321100    12457778887766 556677888888887632     


Q ss_pred             --hHHHH-----HHHhc--CCHHHHHHHHcC-------------------CCHHHHHHHHHHHHHhhcCchhHHHHHhcC
Q 044999          170 --REVRR-----VLICL--GGLRYLVEAVSF-------------------GSMVSRERACQAIGLLAVTGRARRLLVELG  221 (461)
Q Consensus       170 --~~~~~-----~~~~~--~~l~~l~~~l~~-------------------~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~  221 (461)
                        ...+.     .+.+.  .++..+..++..                   .+..++..++.++.+...--+. ..+.+..
T Consensus       169 ~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~l~Wi~~-~~i~~~~  247 (1204)
T 3a6p_A          169 TLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYIDWVSM-SHITAEN  247 (1204)
T ss_dssp             CSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTTTTTSCH-HHHHTTT
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHHHHhccCH-HHHHhcc
Confidence              11111     11111  122333333332                   1234566777777655432222 2222322


Q ss_pred             --ChHHHHHhcccCCHHHHHHHHHHHHHHhcCc---cchhhhhhc---CCHHHHHHHhC--C------CChhHHHHHHHH
Q 044999          222 --VIPGLVELFHIGDWTTKLVAGNTLGVVAAHV---EYITPVAEA---GAIPLYAELLQ--G------PDSTGKEISEDV  285 (461)
Q Consensus       222 --~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~---~~~~~~~~~---g~i~~L~~ll~--~------~~~~~~~~a~~~  285 (461)
                        .++.+..++.  +++++..|+.+|..+....   +.+..++..   ..+..++....  +      .+.++.+..+..
T Consensus       248 ~~ll~~l~~~l~--~~~lr~~A~ecL~~i~s~~~~~~~~~~li~~l~~~~l~~l~~~~~~~~~~~~~e~d~e~~k~l~~l  325 (1204)
T 3a6p_A          248 CKLLEILCLLLN--EQELQLGAAECLLIAVSRKGKLEDRKPLMVLFGDVAMHYILSAAQTADGGGLVEKHYVFLKRLCQV  325 (1204)
T ss_dssp             SHHHHHHHHGGG--CTTTHHHHHHHHHHHHTCCSCHHHHGGGGGGGSHHHHHHHHHHHHTCCCCSCCHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHcC--CHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHhhHHHHHHHHHhhcCCCCCCccHHHHHHHHHHHH
Confidence              5666665554  4678899999999998752   222223221   11234444432  1      134555566666


Q ss_pred             HHHhc-------------cCcccHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhCC
Q 044999          286 FCILA-------------VSEANANAIAEHLVRILREGDNEANAAAADVLWDLAGY  328 (461)
Q Consensus       286 L~~l~-------------~~~~~~~~i~~~l~~ll~~~~~~~~~~a~~~L~~l~~~  328 (461)
                      +..+.             .....-..+.+.++.++...+..+-..++..-..+...
T Consensus       326 l~~lg~~l~~l~~~~~~~~~~~~l~~~l~~lL~~t~~~~~~vs~~~l~fW~~ll~~  381 (1204)
T 3a6p_A          326 LCALGNQLCALLGADSDVETPSNFGKYLESFLAFTTHPSQFLRSSTQMTWGALFRH  381 (1204)
T ss_dssp             HHHHHHHHHHHHHTCSSCCCCTTHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHHhccccccChhHHHHHHHHHHHHHhCccHHhHHHHHHHHHHHHhc
Confidence            55553             12223334447888888777777777777655556544

>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}

Probab=93.14  E-value=11  Score=40.55  Aligned_cols=228  Identities=15%  Similarity=0.138  Sum_probs=118.2

Q ss_pred             HhHHHHHHHhhc-------CCHHHHHHHHHHHHhhc-CCCchhHHHhhHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHH
Q 044999           10 EAFNRFEQAVVS-------GSEALQVKALTKLARVS-KFAPQDILAATIPILARLLGENNFSGNLTRSIQQAAAYCLKQI   81 (461)
Q Consensus        10 ~~~~~l~~ll~~-------~~~~~~~~a~~~l~~la-~~~~~~~l~~~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l   81 (461)
                      .....++..+.+       .+..++.+.+.++..++ .+-+ ..+.+.++.++++++.    +   +.....+..+|..+
T Consensus        89 ~Ir~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p-~~Wp~ll~~L~~~~~~----~---~~~~e~~L~iL~~L  160 (1204)
T 3a6p_A           89 YLKNSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWP-QHWPDMLIELDTLSKQ----G---ETQTELVMFILLRL  160 (1204)
T ss_dssp             HHHHHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHST-TTCTTHHHHHHHHHHT----C---HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCc-ccchHHHHHHHHHhcC----C---HHHHHHHHHHHHHH
Confidence            334556666553       35788888899999988 3222 2233477888888874    2   22344488888888


Q ss_pred             HhcC-C----chh-----HHHHHhc--CCHHHHHhcCCC-------------------CCHHHHHHHHHHHHHHhccChh
Q 044999           82 ASQA-D----GAL-----ATEIGQS--GVINSVLRLFPQ-------------------SDDSFRTVLVKCLRVFVTFGNE  130 (461)
Q Consensus        82 ~~~~-~----~~~-----~~~~~~~--~~l~~L~~ll~~-------------------~~~~~~~~~~~~l~~l~~~~~~  130 (461)
                      +++- +    ...     +..+.+.  ..++.+...+..                   .+..+...+..++.+...--+ 
T Consensus       161 ~Eev~~~~~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~l~Wi~-  239 (1204)
T 3a6p_A          161 AEDVVTFQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYIDWVS-  239 (1204)
T ss_dssp             HHHHHTSCCSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTTTTTSC-
T ss_pred             HHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHHHHhccC-
Confidence            7620 0    001     1112111  111222222221                   112234444444443332111 


Q ss_pred             hHHHHHHcC--CHHHHHHHhcCCChHHHHHHHHHHHHhhC-C--hHHHHHHHhc---CCHHHHHHHHc--------CCCH
Q 044999          131 NRVIVARNG--GLEIVIDLLNSCNDGTRRYLLEILSALAL-L--REVRRVLICL---GGLRYLVEAVS--------FGSM  194 (461)
Q Consensus       131 ~~~~~~~~g--~i~~L~~ll~~~~~~~~~~a~~~L~~l~~-~--~~~~~~~~~~---~~l~~l~~~l~--------~~~~  194 (461)
                       -..+.+..  .++.++.++.  ++.++..|+.+|..+.. .  ++.+..++..   .++..++....        +.+.
T Consensus       240 -~~~i~~~~~~ll~~l~~~l~--~~~lr~~A~ecL~~i~s~~~~~~~~~~li~~l~~~~l~~l~~~~~~~~~~~~~e~d~  316 (1204)
T 3a6p_A          240 -MSHITAENCKLLEILCLLLN--EQELQLGAAECLLIAVSRKGKLEDRKPLMVLFGDVAMHYILSAAQTADGGGLVEKHY  316 (1204)
T ss_dssp             -HHHHHTTTSHHHHHHHHGGG--CTTTHHHHHHHHHHHHTCCSCHHHHGGGGGGGSHHHHHHHHHHHHTCCCCSCCHHHH
T ss_pred             -HHHHHhccchHHHHHHHHcC--CHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHhhHHHHHHHHHhhcCCCCCCccHHH
Confidence             12222322  5666666655  46789999999999983 2  2333333321   12334555542        1134


Q ss_pred             HHHHHHHHHHHHhhcCchhHHHHHh----------cCChHHHHHhcccCCHHHHHHHHHHHHHHhcC
Q 044999          195 VSRERACQAIGLLAVTGRARRLLVE----------LGVIPGLVELFHIGDWTTKLVAGNTLGVVAAH  251 (461)
Q Consensus       195 ~~~~~a~~~L~~l~~~~~~~~~~~~----------~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~  251 (461)
                      +.....++.+..+...  ....+.+          .++++.++.++.+++..+-..++.....+..+
T Consensus       317 e~~k~l~~ll~~lg~~--l~~l~~~~~~~~~~~~l~~~l~~lL~~t~~~~~~vs~~~l~fW~~ll~~  381 (1204)
T 3a6p_A          317 VFLKRLCQVLCALGNQ--LCALLGADSDVETPSNFGKYLESFLAFTTHPSQFLRSSTQMTWGALFRH  381 (1204)
T ss_dssp             HHHHHHHHHHHHHHHH--HHHHHHTCSSCCCCTTHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHHHHHH--HHHHHhccccccChhHHHHHHHHHHHHHhCccHHhHHHHHHHHHHHHhc
Confidence            6666667676666521  1111110          23577777777788888777777766656655

>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B

Probab=92.68  E-value=5.3  Score=36.66  Aligned_cols=139  Identities=12%  Similarity=0.083  Sum_probs=94.9

Q ss_pred             cCChHHHHHhccc-----------CCHHHHHHHHHHHHHHhcCccchhhhhhc-CCHHHHHHHhCCCChhHHHHHHHHHH
Q 044999          220 LGVIPGLVELFHI-----------GDWTTKLVAGNTLGVVAAHVEYITPVAEA-GAIPLYAELLQGPDSTGKEISEDVFC  287 (461)
Q Consensus       220 ~~~i~~L~~ll~~-----------~~~~~~~~a~~~L~~l~~~~~~~~~~~~~-g~i~~L~~ll~~~~~~~~~~a~~~L~  287 (461)
                      .+|+..|+..|..           .+...+..++.||..+..+......+..+ +++..+...+.+..+.++..++..|.
T Consensus        46 ~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalmN~~~Gl~~vl~~~~~i~~l~~sL~s~~~~~r~~vleLL~  125 (386)
T 2bnx_A           46 AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLS  125 (386)
T ss_dssp             HHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTSSHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHH
T ss_pred             HhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCCHHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHH
Confidence            4566666666641           13466778899999998886555555554 77888999998889999999998887


Q ss_pred             HhccCcc--c-HHHHH---------------HHHHHHhc-cCCHHHHHHHHHHHHHhhCCCCc-------hhHHhhcCCH
Q 044999          288 ILAVSEA--N-ANAIA---------------EHLVRILR-EGDNEANAAAADVLWDLAGYKHS-------VPVIRNSGAI  341 (461)
Q Consensus       288 ~l~~~~~--~-~~~i~---------------~~l~~ll~-~~~~~~~~~a~~~L~~l~~~~~~-------~~~l~~~g~i  341 (461)
                      .++..++  + ...+.               ..+++.+. +.+.+.+..++..+-.+...++.       +..+...|..
T Consensus       126 alc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~a~m~lIN~lv~~~~dl~~R~~LR~Ef~~~GL~  205 (386)
T 2bnx_A          126 ALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLH  205 (386)
T ss_dssp             HHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTHH
T ss_pred             HHHcCCCCCChHHHHHHHHHHHHHhCchhhHHHHHHHHHcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCChH
Confidence            7765443  3 33332               56777776 44678888888888888866543       4455566666


Q ss_pred             HHHHHhhcCCCHHHHHH
Q 044999          342 PILVNLLRGENDEVREK  358 (461)
Q Consensus       342 ~~L~~ll~~~~~~v~~~  358 (461)
                      +.+-.+-...++.+..+
T Consensus       206 ~il~~Lr~~~~~~L~~Q  222 (386)
T 2bnx_A          206 QVLQELREIENEDMKVQ  222 (386)
T ss_dssp             HHHHHHTTCCCHHHHHH
T ss_pred             HHHHHHhccCChhHHHH
Confidence            66665554556655444

>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A

Probab=91.79  E-value=15  Score=38.81  Aligned_cols=385  Identities=11%  Similarity=0.063  Sum_probs=190.9

Q ss_pred             CcHHHhHHHHHHHhhcCCHHHHHHHHHHHHhhc-C--CC-------c-----hhHHHh----hHHHHHHhhccCCCCCCC
Q 044999            6 TNWEEAFNRFEQAVVSGSEALQVKALTKLARVS-K--FA-------P-----QDILAA----TIPILARLLGENNFSGNL   66 (461)
Q Consensus         6 ~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~la-~--~~-------~-----~~~l~~----~i~~l~~~l~~~~~~~~~   66 (461)
                      ..|...++.++.++++. +.........|..|. .  ..       .     ++.+..    +++.+...|..    . .
T Consensus       146 ~~Wp~fi~dLv~~~~~~-~~~~~~~L~IL~~L~EEV~d~~~~~l~~~r~~~lk~~L~~~~~~Il~ll~~iL~~----~-~  219 (1073)
T 3gjx_A          146 KHWPTFISDIVGASRTS-ESLCQNNMVILKLLSEEVFDFSSGQITQVKAKHLKDSMCNEFSQIFQLCQFVMEN----S-Q  219 (1073)
T ss_dssp             TTCTTHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHTTSHHHHBCHHHHHHHHHHHHHTCHHHHHHHHHHHHH----C-C
T ss_pred             hhccHHHHHHHHHhCCC-HHHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHhcc----c-C
Confidence            36999999999988653 445566677777776 2  11       1     122333    44444555654    2 3


Q ss_pred             cHHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHH-HhcCCCCCHHHHHHHHHHHHHHhccC-hhhHHHHHH--cCCHH
Q 044999           67 TRSIQQAAAYCLKQIASQADGALATEIGQSGVINSV-LRLFPQSDDSFRTVLVKCLRVFVTFG-NENRVIVAR--NGGLE  142 (461)
Q Consensus        67 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L-~~ll~~~~~~~~~~~~~~l~~l~~~~-~~~~~~~~~--~g~i~  142 (461)
                      +++....+..+|...... -  ....+...+.++.+ ...|  +++..+..|+.|+..+...+ ++....+..  .+.+.
T Consensus       220 ~~~lv~~~L~~L~~~~sW-I--~i~~i~~~~ll~~L~~~~L--~~~~~r~aA~dcL~eIv~k~~~~~~~~~~~lf~~~~~  294 (1073)
T 3gjx_A          220 NAPLVHATLETLLRFLNW-I--PLGYIFETKLISTLIYKFL--NVPMFRNVSLKCLTEIAGVSVSQYEEQFETLFTLTMM  294 (1073)
T ss_dssp             CHHHHHHHHHHHHHHTTT-S--CTHHHHSSSHHHHHHHHTS--SSHHHHHHHHHHHHHHHHSCSGGGHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHh-c--CHHHhccchHHHHHHHHhc--CChHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHH
Confidence            455666688889888875 2  23456678888888 4777  46778999999999777542 222222211  11122


Q ss_pred             HHHHHhcC-------------CChHHHHHHHHHHHHhhCChHHHHHHHhc-C-------CHHHHHHHHcCCCHHHHHHHH
Q 044999          143 IVIDLLNS-------------CNDGTRRYLLEILSALALLREVRRVLICL-G-------GLRYLVEAVSFGSMVSRERAC  201 (461)
Q Consensus       143 ~L~~ll~~-------------~~~~~~~~a~~~L~~l~~~~~~~~~~~~~-~-------~l~~l~~~l~~~~~~~~~~a~  201 (461)
                      .+..++..             .+.+....-+..+..+..  .....+... +       ++..++.+-..++.++-..++
T Consensus       295 ~i~~ilp~~~~l~~~y~~~~~~d~e~~~~l~~~f~~~~e--~~~~lIe~~p~~~~~l~~~l~~ll~~s~~~d~ei~kitf  372 (1073)
T 3gjx_A          295 QLKQMLPLNTNIRLAYSNGKDDEQNFIQNLSLFLCTFLK--EHGQLLEKRLNLREALMEALHYMLLVSEVEETEIFKICL  372 (1073)
T ss_dssp             HHHHHSCTTSCHHHHHHTCCTTHHHHHHHHHHHHHHHHH--HHHHHHHHCGGGHHHHHHHHHHHHHHTTCSCHHHHHHHH
T ss_pred             HHHHhcCCchhHHHHHhccchhhHHHHHHHHHHHHHHHH--HHHHHHhcCccchHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence            22222211             112222333333333321  111112111 1       344455555667778777666


Q ss_pred             HHHHHhhcC----c------------------hhHHHHHh---cCChHHHHHhcccCC--------------------HH
Q 044999          202 QAIGLLAVT----G------------------RARRLLVE---LGVIPGLVELFHIGD--------------------WT  236 (461)
Q Consensus       202 ~~L~~l~~~----~------------------~~~~~~~~---~~~i~~L~~ll~~~~--------------------~~  236 (461)
                      ..=..+...    .                  ..++.+..   ......++.-+..++                    .+
T Consensus       373 ~fW~~L~~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~y~~i~~~L~~vlI~~m~~P~ev~i~e~e~ge~~re~~~d~~~  452 (1073)
T 3gjx_A          373 EYWNHLAAELYRESPFSTSASPLLSGSQHFDIPPRRQLYLTVLSKVRLLMVSRMAKPEEVLVVENDQGEVVREFMKDTDS  452 (1073)
T ss_dssp             HHHHHHHHHHHHHCCSCCCCSSCTTSSCCSCSCHHHHTTHHHHHHHHHHHHHTCCCSCCEEEEECSSSCEEEEECSSCHH
T ss_pred             HHHHHHHHHHHhhccccccccccccccccccchhHHHHHHHHHHHHHHHHHHhcCCCccccccCcccchHHHHHHhhcch
Confidence            553333211    0                  01111111   112223333333211                    00


Q ss_pred             --HHHHHHHHHHHHhcC-ccchhhhhhcCCHHHHHHHhCC--CChhHHHHHHHHHHHhccCcc--cHHHHH----HHHHH
Q 044999          237 --TKLVAGNTLGVVAAH-VEYITPVAEAGAIPLYAELLQG--PDSTGKEISEDVFCILAVSEA--NANAIA----EHLVR  305 (461)
Q Consensus       237 --~~~~a~~~L~~l~~~-~~~~~~~~~~g~i~~L~~ll~~--~~~~~~~~a~~~L~~l~~~~~--~~~~i~----~~l~~  305 (461)
                        .....-.+|..++.. .+....+    ..+.+.+.+..  .++...+.++++++.++..-.  ....+.    +.|++
T Consensus       453 ~~ly~~mrd~L~~lt~l~~~~~~~i----~~~~l~~~~~~~~~sW~~lea~~~aigaIag~~~~~~E~~~Lp~vi~~Ll~  528 (1073)
T 3gjx_A          453 INLYKNMRETLVYLTHLDYVDTEII----MTKKLQNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLG  528 (1073)
T ss_dssp             HHHHHHHHHHHHHHHHHCHHHHHHH----HHHHHHHHHTSCCCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHH----HHHHHHHHhcCCCCCHHHHhHHHHHHHHHHCcCCcccccchHHHHHHHHhc
Confidence              111111233333311 1111111    13444444443  368899999999999965433  222333    55555


Q ss_pred             HhccCC---HH--HHHHHHHHHHHhhCCCCchhHHhhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCChhhHHHHHhC-
Q 044999          306 ILREGD---NE--ANAAAADVLWDLAGYKHSVPVIRNSGAIPILVNLLRGENDEVREKVSGAIAQLSYNEADRVALADA-  379 (461)
Q Consensus       306 ll~~~~---~~--~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-  379 (461)
                      +.....   ..  ++...+.+++..+.--.....+.+ ..+..|.+.+.+.++.++..|+.++..+|.  +++..++.. 
T Consensus       529 L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h~~~L~-~vl~~L~~~m~~~~~~vq~aA~~af~~i~~--~C~~~lv~~~  605 (1073)
T 3gjx_A          529 LCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHWKFLK-TVVNKLFEFMHETHDGVQDMACDTFIKIAQ--KCRRHFVQVQ  605 (1073)
T ss_dssp             HHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHH-HHHHHHHHHTTCCSTTHHHHHHHHHHHHHH--HTGGGGTSCC
T ss_pred             ccccccccchhHHHHHHHHHHHhhhHHHHHhCHHHHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHHHH--HHHHHHhhcc
Confidence            554331   12  233334555555432111122222 256667777888899999999999999995  334444331 


Q ss_pred             -C----ChHHHHHhc----cCCCHHHHHHHHHHHHHhcCC
Q 044999          380 -G----AVPIMIELL----HDESEELRDNAAESLINFSED  410 (461)
Q Consensus       380 -~----~i~~L~~ll----~~~~~~~~~~a~~~L~~l~~~  410 (461)
                       |    .++.+++.+    ..-.++-......++..+...
T Consensus       606 ~~e~~p~i~~il~~~~~~~~~l~~~~~~~lyeav~~vi~~  645 (1073)
T 3gjx_A          606 VGEVMPFIDEILNNINTIICDLQPQQVHTFYEAVGYMIGA  645 (1073)
T ss_dssp             TTCSSCHHHHHHTSHHHHHTTCCHHHHHHHHHHHHHHHTT
T ss_pred             ccccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Confidence             1    234444432    223566666666677766544

>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}

Probab=91.10  E-value=4.1  Score=35.50  Aligned_cols=142  Identities=8%  Similarity=-0.033  Sum_probs=88.4

Q ss_pred             HHHHHhcCC------ChHHHHHHHHHHHHhhCChHHHHHHHhc--CCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCchh-
Q 044999          143 IVIDLLNSC------NDGTRRYLLEILSALALLREVRRVLICL--GGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRA-  213 (461)
Q Consensus       143 ~L~~ll~~~------~~~~~~~a~~~L~~l~~~~~~~~~~~~~--~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~-  213 (461)
                      ...+++.++      +...-..|+..|..++.+-..--.+.+.  ..+..|+ +....++.+++.+.++++....+++. 
T Consensus        26 ~~r~ll~sg~~~~~~D~~~le~aLD~L~ElSHDi~~G~KI~~~ef~lL~nL~-~~~~~~~~~rE~aarII~ssLRNNP~A  104 (315)
T 3qml_C           26 EMRNIIDSNPTLSSQDIARLEDSFDRIMEFAHDYKHGYKIITHEFALLANLS-LNENLPLTLRELSTRVITSCLRNNPPV  104 (315)
T ss_dssp             HHHHHHHHCSSCCHHHHHHHHHHHHHHGGGTTSHHHHHHHHHHHHHHHHHHH-HCTTSCHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHcCCCCCcccHHHHHHHHHHHHHhhhhHHhhhHHHhCcHHHHHHHH-hhccCChhHHHHHHHHHHHHHccCHHH
Confidence            345555554      3345688999999999888887777753  2344444 33445778999999999999988887 


Q ss_pred             HHHHHh--cCChHHHHHhccc-------CCHHHHHHHHHHHHHHhcCccchhhhhhcCCHHHHHHHhCCC--ChhHHHHH
Q 044999          214 RRLLVE--LGVIPGLVELFHI-------GDWTTKLVAGNTLGVVAAHVEYITPVAEAGAIPLYAELLQGP--DSTGKEIS  282 (461)
Q Consensus       214 ~~~~~~--~~~i~~L~~ll~~-------~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~ll~~~--~~~~~~~a  282 (461)
                      -..+.+  ..++..+..-|..       ....++..-+.+|..|..++.   .+ ...++..|.+++...  ++.++..+
T Consensus       105 l~~V~~~~p~fv~~lf~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~~---~F-~~~~m~~L~~ly~~~~~d~~~k~Kv  180 (315)
T 3qml_C          105 VEFINESFPNFKSKIMAALSNLNDSNHRSSNILIKRYLSILNELPVTSE---DL-PIYSTVVLQNVYERNNKDKQLQIKV  180 (315)
T ss_dssp             HHHHHHHCTTHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHSCCCST---TC---CCHHHHHHHHHHTTTCHHHHHHH
T ss_pred             HHHHHHhChhHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHhcChH---hh-hhccHHHHHHHHccCCCCHHHHHHH
Confidence            444444  3344444433332       234556666777777776641   12 233467777776655  67777766


Q ss_pred             HHHHHHh
Q 044999          283 EDVFCIL  289 (461)
Q Consensus       283 ~~~L~~l  289 (461)
                      +..+..+
T Consensus       181 l~li~d~  187 (315)
T 3qml_C          181 LELISKI  187 (315)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            6555443

>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*

Probab=90.84  E-value=3.5  Score=36.64  Aligned_cols=110  Identities=9%  Similarity=0.066  Sum_probs=86.7

Q ss_pred             HHHHhccChhhHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHhhCChHHHHHHHhcCCHHHHHHHHc-CCCHHHHHH
Q 044999          121 LRVFVTFGNENRVIVARNGGLEIVIDLLNSCNDGTRRYLLEILSALALLREVRRVLICLGGLRYLVEAVS-FGSMVSRER  199 (461)
Q Consensus       121 l~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~~l~-~~~~~~~~~  199 (461)
                      +.++..++...-..+++.+|+..+.....-++.++....+..|...+........-. ...+|-++..+. +++.++.+.
T Consensus       266 LL~LLmHdSnAIDGFVk~DGv~~I~TvinYpN~~l~RaG~KLLLQVSDaksL~~t~L-~e~LPFi~~~i~~h~eDdvvYS  344 (619)
T 3c2g_A          266 LLGLLLHDSDAIDGFVRSDGVGAITTVVQYPNNDLIRAGCKLLLQVSDAKALAKTPL-ENILPFLLRLIEIHPDDEVIYS  344 (619)
T ss_dssp             HHHHHCCSHHHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHTTCGGGGTSCC-TTHHHHHHHHHHHCCCHHHHHH
T ss_pred             HHHHHhcccccccceeecccceeEEEEeecCCcHHHHhhhheeeeecchHHHhhccc-cccchHHHHHhccCCCcceEEe
Confidence            347777887888999999999999999999999999999999998875443321111 235666666664 668899999


Q ss_pred             HHHHHHHhhcCchh-HHHHHhcCChHHHHHhcc
Q 044999          200 ACQAIGLLAVTGRA-RRLLVELGVIPGLVELFH  231 (461)
Q Consensus       200 a~~~L~~l~~~~~~-~~~~~~~~~i~~L~~ll~  231 (461)
                      ..+.|.|...+... ++.-...|+++.|-..+.
T Consensus       345 GTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~  377 (619)
T 3c2g_A          345 GTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIIS  377 (619)
T ss_dssp             HHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHH
T ss_pred             cchHHHHHHhcccchHHHHhccCcHHHHHHHHh
Confidence            99999999888776 777778899998888765

>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}

Probab=90.59  E-value=7.7  Score=33.82  Aligned_cols=153  Identities=10%  Similarity=0.162  Sum_probs=100.7

Q ss_pred             CCcHHHhHHHHHHHhhcC------CHHHHHHHHHHHHhhc-CCCchhHHHh-hHHHHHHhhccCCCCCCCcHHHHHHHHH
Q 044999            5 DTNWEEAFNRFEQAVVSG------SEALQVKALTKLARVS-KFAPQDILAA-TIPILARLLGENNFSGNLTRSIQQAAAY   76 (461)
Q Consensus         5 ~~~~~~~~~~l~~ll~~~------~~~~~~~a~~~l~~la-~~~~~~~l~~-~i~~l~~~l~~~~~~~~~~~~~~~~a~~   76 (461)
                      ++.....|..+..++.++      |......|+..|..++ +......|.+ -.+.|-.++..    ...++.+...|++
T Consensus        17 ~yeFs~~F~~~r~ll~sg~~~~~~D~~~le~aLD~L~ElSHDi~~G~KI~~~ef~lL~nL~~~----~~~~~~~rE~aar   92 (315)
T 3qml_C           17 DYEFSSDFKEMRNIIDSNPTLSSQDIARLEDSFDRIMEFAHDYKHGYKIITHEFALLANLSLN----ENLPLTLRELSTR   92 (315)
T ss_dssp             CCTTHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHGGGTTSHHHHHHHHHHHHHHHHHHHHC----TTSCHHHHHHHHH
T ss_pred             ccchHHHHHHHHHHHHcCCCCCcccHHHHHHHHHHHHHhhhhHHhhhHHHhCcHHHHHHHHhh----ccCChhHHHHHHH
Confidence            455778889999999998      5556778889999999 7766666665 55555555533    3344556666888


Q ss_pred             HHHHHHhcCCchhHHHHHhc--CCHHHHHhcCCC-------CCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHH
Q 044999           77 CLKQIASQADGALATEIGQS--GVINSVLRLFPQ-------SDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDL  147 (461)
Q Consensus        77 ~L~~l~~~~~~~~~~~~~~~--~~l~~L~~ll~~-------~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~l  147 (461)
                      .+..-... ++.....+...  .++..+..-|..       ....+++..+..+-.|...+.    .+ ...++..|.++
T Consensus        93 II~ssLRN-NP~Al~~V~~~~p~fv~~lf~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~~----~F-~~~~m~~L~~l  166 (315)
T 3qml_C           93 VITSCLRN-NPPVVEFINESFPNFKSKIMAALSNLNDSNHRSSNILIKRYLSILNELPVTSE----DL-PIYSTVVLQNV  166 (315)
T ss_dssp             HHHHHHTT-CHHHHHHHHHHCTTHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHSCCCST----TC---CCHHHHHHH
T ss_pred             HHHHHHcc-CHHHHHHHHHhChhHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHhcChH----hh-hhccHHHHHHH
Confidence            88888886 56555555443  334444433322       233456666666667775542    12 25578888888


Q ss_pred             hcCC--ChHHHHHHHHHHHHhh
Q 044999          148 LNSC--NDGTRRYLLEILSALA  167 (461)
Q Consensus       148 l~~~--~~~~~~~a~~~L~~l~  167 (461)
                      +...  ++.++..++..+..+-
T Consensus       167 y~~~~~d~~~k~Kvl~li~d~f  188 (315)
T 3qml_C          167 YERNNKDKQLQIKVLELISKIL  188 (315)
T ss_dssp             HHHTTTCHHHHHHHHHHHHHHH
T ss_pred             HccCCCCHHHHHHHHHHHHHHc
Confidence            8777  8889998888887665

>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1

Probab=90.53  E-value=18  Score=38.17  Aligned_cols=170  Identities=10%  Similarity=0.074  Sum_probs=107.6

Q ss_pred             HHhHHHHHHHhhc----CCHHHHHHHHHHHHhhc-----C-CCch-hHHHhhHHHHHHhhccCCCCCCCcHHHHHHHHHH
Q 044999            9 EEAFNRFEQAVVS----GSEALQVKALTKLARVS-----K-FAPQ-DILAATIPILARLLGENNFSGNLTRSIQQAAAYC   77 (461)
Q Consensus         9 ~~~~~~l~~ll~~----~~~~~~~~a~~~l~~la-----~-~~~~-~~l~~~i~~l~~~l~~~~~~~~~~~~~~~~a~~~   77 (461)
                      ++.++.+..++.+    .++.++..+..+++.|.     + .... ..+......+.+.+..    +  +......++.+
T Consensus       390 ~e~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~~i~~~l~~~~~~----~--~~~~~~~~Lka  463 (1056)
T 1lsh_A          390 RESLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDR----A--KEEEIVLALKA  463 (1056)
T ss_dssp             HHHHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHT----T--CHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhc----C--ChHHHHHHHHH
Confidence            4455666666665    35667777777777776     2 2212 2222255566666665    3  34455558899


Q ss_pred             HHHHHhcCCchhHHHHHhcCCHHHHHhcCCC-------CCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHh--
Q 044999           78 LKQIASQADGALATEIGQSGVINSVLRLFPQ-------SDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLL--  148 (461)
Q Consensus        78 L~~l~~~~~~~~~~~~~~~~~l~~L~~ll~~-------~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll--  148 (461)
                      |.|+..  +          ..++.|.+++..       ....++..|..++..++...+..        +-+.++.+.  
T Consensus       464 LGN~g~--p----------~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~~--------v~~il~~i~~n  523 (1056)
T 1lsh_A          464 LGNAGQ--P----------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRK--------VQEIVLPIFLN  523 (1056)
T ss_dssp             HHHHTC--G----------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHH--------HHHHHHHHHHC
T ss_pred             hhccCC--h----------hHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhchHH--------HHHHHHHHhcC
Confidence            999987  3          245667776642       23467788888888888654322        233466766  


Q ss_pred             cCCChHHHHHHHHHHHHhhCChHHHHHHHhcCCHHHHHHHHcC-CCHHHHHHHHHHHHHhhcCchh
Q 044999          149 NSCNDGTRRYLLEILSALALLREVRRVLICLGGLRYLVEAVSF-GSMVSRERACQAIGLLAVTGRA  213 (461)
Q Consensus       149 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~~l~~-~~~~~~~~a~~~L~~l~~~~~~  213 (461)
                      ...++++|..|+..|....-...         .+..+...+.. .+.++.......|.+++.....
T Consensus       524 ~~e~~EvRiaA~~~Lm~t~P~~~---------~l~~ia~~l~~E~~~QV~sfv~S~l~sla~s~~P  580 (1056)
T 1lsh_A          524 VAIKSELRIRSCIVFFESKPSVA---------LVSMVAVRLRREPNLQVASFVYSQMRSLSRSSNP  580 (1056)
T ss_dssp             TTSCHHHHHHHHHHHHHTCCCHH---------HHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCCSG
T ss_pred             CCCChHHHHHHHHHHHHHCcCHH---------HHHHHHHHHhhCchHHHHHHHHHHHHHHHhcCCc
Confidence            44567999999988864432111         35556666665 4889999999999999887654

>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}

Probab=88.24  E-value=11  Score=31.78  Aligned_cols=151  Identities=14%  Similarity=0.083  Sum_probs=93.9

Q ss_pred             cChhhHHHHHHcCCHHHHHHHhcCC-----------ChHHHHHHHHHHHHhhCChHHHHHHHh-cCCHHHHHHHHcCCCH
Q 044999          127 FGNENRVIVARNGGLEIVIDLLNSC-----------NDGTRRYLLEILSALALLREVRRVLIC-LGGLRYLVEAVSFGSM  194 (461)
Q Consensus       127 ~~~~~~~~~~~~g~i~~L~~ll~~~-----------~~~~~~~a~~~L~~l~~~~~~~~~~~~-~~~l~~l~~~l~~~~~  194 (461)
                      .+..=-..| ..+|+..|++.+...           +...+..++.+|..+..+......+.. .+.+..+...+.++++
T Consensus        32 ~~~~Wv~~F-~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L~s~~~  110 (233)
T 2f31_A           32 NPVSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVP  110 (233)
T ss_dssp             SCHHHHHHH-HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTSSHHHHHHHHTSSSHHHHHHTTCCTTSH
T ss_pred             CCcHHHHHH-HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhCChHHHHHHHcCcHHHHHHHHHhCCCCc
Confidence            333334555 467888888876421           346678889999999988877777766 4588889999988899


Q ss_pred             HHHHHHHHHHHHhhcCch--h-HHHHH----------hcCChHHHHHhccc-CCHHHHHHHHHHHHHH-hcCcc------
Q 044999          195 VSRERACQAIGLLAVTGR--A-RRLLV----------ELGVIPGLVELFHI-GDWTTKLVAGNTLGVV-AAHVE------  253 (461)
Q Consensus       195 ~~~~~a~~~L~~l~~~~~--~-~~~~~----------~~~~i~~L~~ll~~-~~~~~~~~a~~~L~~l-~~~~~------  253 (461)
                      .++..++..|..++..++  . ...+.          +..-+..+++.+.+ .+.+.+..+. .+.|. ...++      
T Consensus       111 ~~r~~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~~~m-~lIN~li~~~~dl~~R~  189 (233)
T 2f31_A          111 NMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCL-QLINALITPAEELDFRV  189 (233)
T ss_dssp             HHHHHHHHHHHHHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHH-HHHHHHHTTCCCHHHHH
T ss_pred             hHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhcCChHHHHHHHH-HHHHHHHCCCCCHHHHH
Confidence            999999999988886654  2 32222          23356667777774 3444544444 44443 33332      


Q ss_pred             -chhhhhhcCCHHHHHHHhCCCChhHH
Q 044999          254 -YITPVAEAGAIPLYAELLQGPDSTGK  279 (461)
Q Consensus       254 -~~~~~~~~g~i~~L~~ll~~~~~~~~  279 (461)
                       .|..+...|..+.+-.+=...++++.
T Consensus       190 ~lR~ef~~~Gl~~il~~l~~~~~~~L~  216 (233)
T 2f31_A          190 HIRSELMRLGLHQVLQELREIENEDMK  216 (233)
T ss_dssp             HHHHHHHHTTHHHHHHHHHHCCCHHHH
T ss_pred             HHHHHHHHCChHHHHHHHhccCCHHHH
Confidence             24455556644444444333444443

>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*

Probab=86.83  E-value=18  Score=32.92  Aligned_cols=205  Identities=11%  Similarity=0.088  Sum_probs=129.2

Q ss_pred             HHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhcccCCHHHHHHHHHHHHHHhcC-ccchhhhhhcCCHHHHHHHhCCC
Q 044999          196 SRERACQAIGLLAVTGRARRLLVELGVIPGLVELFHIGDWTTKLVAGNTLGVVAAH-VEYITPVAEAGAIPLYAELLQGP  274 (461)
Q Consensus       196 ~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~g~i~~L~~ll~~~  274 (461)
                      .+...+.-+..+..+.+. ..  -.++++.++.+-.+.+.+++.+.+..|...+.. .+..     ...++.|..++.+.
T Consensus        41 ~Kl~~L~q~~EL~l~~dp-sL--l~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~~~el~-----~~~l~~L~~LL~d~  112 (386)
T 3o2t_A           41 SKITVLKQVQELIINKDP-TL--LDNFLDEIIAFQADKSIEVRKFVIGFIEEACKRDIELL-----LKLIANLNMLLRDE  112 (386)
T ss_dssp             HHHHHHHHHHHHHHTTCG-GG--GGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGH-----HHHHHHHHHHHTCS
T ss_pred             HHHHHHHHHHHHHhccCH-HH--HHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHcCC
Confidence            455555555554433211 11  135788999988899999999999999888753 2222     23478899999988


Q ss_pred             ChhHHHHHHHHHHHh--------ccCcc------cHHHHH----HHHHHHhccCCHHHHHHHHHHHHHhh--CCC---Cc
Q 044999          275 DSTGKEISEDVFCIL--------AVSEA------NANAIA----EHLVRILREGDNEANAAAADVLWDLA--GYK---HS  331 (461)
Q Consensus       275 ~~~~~~~a~~~L~~l--------~~~~~------~~~~i~----~~l~~ll~~~~~~~~~~a~~~L~~l~--~~~---~~  331 (461)
                      ++.+.+.++.+..++        +.++.      ..+...    ..++.++.+++..++..|++++-.+.  ..+   +.
T Consensus       113 d~~V~K~~I~~~tslYpl~f~~i~~~~~~~~~~e~~W~~m~~lK~~Il~~~ds~n~GVrl~aiKFle~VIl~qS~~~~d~  192 (386)
T 3o2t_A          113 NVNVVKKAILTMTQLYKVALQWMVKSRVISELQEACWDMVSAMAGDIILLLDSDNDGIRTHAIKFVEGLIVTLSPRMADS  192 (386)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHTSCCCTTC
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHhCCCCCCc
Confidence            999888887766655        22332      122222    88888899999999999999887765  111   10


Q ss_pred             h-----------------------hHHh--hcCCHHHHHHhhcCC--CHHHHHHHHHHHHHhcC-ChhhHHHHHhCCChH
Q 044999          332 V-----------------------PVIR--NSGAIPILVNLLRGE--NDEVREKVSGAIAQLSY-NEADRVALADAGAVP  383 (461)
Q Consensus       332 ~-----------------------~~l~--~~g~i~~L~~ll~~~--~~~v~~~a~~~L~~l~~-~~~~~~~~~~~~~i~  383 (461)
                      .                       ..+-  ..+.+..|+.++...  ++.....++.+|..+++ .|..-..++     +
T Consensus       193 ~~p~~~~~d~SL~~VP~nHp~L~~~~Le~EA~~lLd~LL~~l~~~~iss~~l~a~lnsLa~Iak~RP~~~~rIl-----~  267 (386)
T 3o2t_A          193 EIPRRQEHDISLDRIPRDHPYIQYNVLWEEGKAALEQLLKFMVHPAISSINLTTALGSLANIARQRPMFMSEVI-----Q  267 (386)
T ss_dssp             CCCGGGTTSCCGGGSCTTCSSSCHHHHHHHHHHHHHHHHHHTTC--CCHHHHHHHHHHHHHHHHHSGGGHHHHH-----H
T ss_pred             ccccccCCCCCHhhCCCCCCcCCHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHhcHHHHHHHH-----H
Confidence            0                       0111  123467777777753  34455567788888888 776555553     3


Q ss_pred             HHHHhc--------cCCCHHHHHHHHHHHHHhcCCCcc
Q 044999          384 IMIELL--------HDESEELRDNAAESLINFSEDPLQ  413 (461)
Q Consensus       384 ~L~~ll--------~~~~~~~~~~a~~~L~~l~~~~~~  413 (461)
                      .|..+-        +.....++...-..|.++..++..
T Consensus       268 aL~~l~~n~p~t~sk~qvkSv~KtLR~~Ll~lLK~p~s  305 (386)
T 3o2t_A          268 AYETLHANLPPTLAKSQVSSVRKNLKLHLLSVLKHPAS  305 (386)
T ss_dssp             HHHHHHHCC----CGGGHHHHHHHHHHHHHHHHTSGGG
T ss_pred             HHHhhcCCCCccHHHHHHHHHHHHHHHHHHHHHcCCCc
Confidence            333221        123455777777788888877654

>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*

Probab=86.17  E-value=20  Score=32.76  Aligned_cols=158  Identities=14%  Similarity=0.126  Sum_probs=100.8

Q ss_pred             HHHHH-HHhccChhhHHHHHHcCCHHHHHHHhcC-----------CChHHHHHHHHHHHHhhCChHHHHHHHh-cCCHHH
Q 044999          118 VKCLR-VFVTFGNENRVIVARNGGLEIVIDLLNS-----------CNDGTRRYLLEILSALALLREVRRVLIC-LGGLRY  184 (461)
Q Consensus       118 ~~~l~-~l~~~~~~~~~~~~~~g~i~~L~~ll~~-----------~~~~~~~~a~~~L~~l~~~~~~~~~~~~-~~~l~~  184 (461)
                      ...|. .|......--..|. .+|+..|+++|..           .+...+..++.+|..+..+......+.. ..++..
T Consensus        88 L~sL~v~Lrt~~~sWV~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalmN~~~G~~~vl~~~~~i~~  166 (383)
T 3eg5_B           88 LESLRVSLTSHPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILL  166 (383)
T ss_dssp             HHHHHHHHHHSCHHHHHHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHTSSHHHHHHHHTCSSHHHH
T ss_pred             HHHHHHHHhhCccHHHHHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHhcchhhHHHHHcChHHHHH
Confidence            33444 34433334445555 6788888887742           2347788899999999988877777776 458899


Q ss_pred             HHHHHcCCCHHHHHHHHHHHHHhhcCch--h-HHHHH----------hcCChHHHHHhccc-CCHHHHHHHHHHHHH-Hh
Q 044999          185 LVEAVSFGSMVSRERACQAIGLLAVTGR--A-RRLLV----------ELGVIPGLVELFHI-GDWTTKLVAGNTLGV-VA  249 (461)
Q Consensus       185 l~~~l~~~~~~~~~~a~~~L~~l~~~~~--~-~~~~~----------~~~~i~~L~~ll~~-~~~~~~~~a~~~L~~-l~  249 (461)
                      +...+.+.++.++..++..|..+|..++  + ...+.          +..-+..++..+.+ .+.+.+..+. .+.| +.
T Consensus       167 l~~~L~s~~~~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~~~~~e~~~~~m-~lIN~li  245 (383)
T 3eg5_B          167 LVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCL-QLINALI  245 (383)
T ss_dssp             HHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHH-HHHHHHH
T ss_pred             HHHHhCCCchHHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHccCcHHHHHHHH-HHHHHHH
Confidence            9999999999999999999998887654  2 33322          23457788888886 4555555444 4444 33


Q ss_pred             cCcc-------chhhhhhcCCHHHHHHHhCCC-ChhH
Q 044999          250 AHVE-------YITPVAEAGAIPLYAELLQGP-DSTG  278 (461)
Q Consensus       250 ~~~~-------~~~~~~~~g~i~~L~~ll~~~-~~~~  278 (461)
                      ..++       .|..+...|..+.+-. ++.. ++++
T Consensus       246 ~~~~dl~~R~~lR~ef~~~Gl~~il~~-lr~~~~~~L  281 (383)
T 3eg5_B          246 TPAEELDFRVHIRSELMRLGLHQVLQE-LREIENEDM  281 (383)
T ss_dssp             TTCCCHHHHHHHHHHHHHTTHHHHHHH-HTTSCCHHH
T ss_pred             cCCCCHHHHHHHHHHHHHCChHHHHHH-HhcCCChhH
Confidence            3322       2444555675444444 5543 4444

>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B

Probab=85.13  E-value=23  Score=32.45  Aligned_cols=147  Identities=14%  Similarity=0.113  Sum_probs=92.5

Q ss_pred             HHHHHHcCCHHHHHHHhcC-----------CChHHHHHHHHHHHHhhCChHHHHHHHh-cCCHHHHHHHHcCCCHHHHHH
Q 044999          132 RVIVARNGGLEIVIDLLNS-----------CNDGTRRYLLEILSALALLREVRRVLIC-LGGLRYLVEAVSFGSMVSRER  199 (461)
Q Consensus       132 ~~~~~~~g~i~~L~~ll~~-----------~~~~~~~~a~~~L~~l~~~~~~~~~~~~-~~~l~~l~~~l~~~~~~~~~~  199 (461)
                      -..|. .+|+..|+.+|..           .+......++.+|..+..+......+.. .+++..+...+.+.++.++..
T Consensus        41 v~~F~-~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalmN~~~Gl~~vl~~~~~i~~l~~sL~s~~~~~r~~  119 (386)
T 2bnx_A           41 VQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMID  119 (386)
T ss_dssp             HHHHH-HHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTSSHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHH
T ss_pred             HHHHH-HhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCCHHHHHHHHcCcHHHHHHHHHhCCCCchHHHH
Confidence            34443 5677777776632           1346778899999999988777776665 468888999998889999999


Q ss_pred             HHHHHHHhhcCch--h-HHHHH----------hcCChHHHHHhccc-CCHHHHHHHHHHHHHH-hcCcc-------chhh
Q 044999          200 ACQAIGLLAVTGR--A-RRLLV----------ELGVIPGLVELFHI-GDWTTKLVAGNTLGVV-AAHVE-------YITP  257 (461)
Q Consensus       200 a~~~L~~l~~~~~--~-~~~~~----------~~~~i~~L~~ll~~-~~~~~~~~a~~~L~~l-~~~~~-------~~~~  257 (461)
                      ++..|..+|..++  . ...+.          +..-+..++..+.+ .+.+.+..+ ..+.|. ...++       .|..
T Consensus       120 vleLL~alc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~a~-m~lIN~lv~~~~dl~~R~~LR~E  198 (386)
T 2bnx_A          120 AAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGC-LQLINALITPAEELDFRVHIRSE  198 (386)
T ss_dssp             HHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTTSCHHHHHHH-HHHHHHHHTTCSCHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCCCChHHHHHHHHHHHHHhCchhhHHHHHHHHHcCChHHHHHHH-HHHHHHHHCCCCCHHHHHHHHHH
Confidence            9999988887654  2 22222          23356678887774 344554444 444444 33332       2455


Q ss_pred             hhhcCCHHHHHHHhCCCChhHHH
Q 044999          258 VAEAGAIPLYAELLQGPDSTGKE  280 (461)
Q Consensus       258 ~~~~g~i~~L~~ll~~~~~~~~~  280 (461)
                      +...|+.+.+-.+-...++++..
T Consensus       199 f~~~GL~~il~~Lr~~~~~~L~~  221 (386)
T 2bnx_A          199 LMRLGLHQVLQELREIENEDMKV  221 (386)
T ss_dssp             HHHTTHHHHHHHHTTCCCHHHHH
T ss_pred             HHHCChHHHHHHHhccCChhHHH
Confidence            56667555444443334555443

>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}

Probab=84.22  E-value=19  Score=30.76  Aligned_cols=124  Identities=11%  Similarity=0.080  Sum_probs=85.0

Q ss_pred             HHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhcccCCHHHHHHHHHHHHHHhcC-ccchhhhhhcCCHHHHHHHhCC
Q 044999          195 VSRERACQAIGLLAVTGRARRLLVELGVIPGLVELFHIGDWTTKLVAGNTLGVVAAH-VEYITPVAEAGAIPLYAELLQG  273 (461)
Q Consensus       195 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~g~i~~L~~ll~~  273 (461)
                      +.+...+.-...+..+.+.. .+  ..+++.++.+..+.+.+++...+..+...+.. ++..     ...++.|..++++
T Consensus        30 ~~kl~~L~qa~el~~~~dp~-ll--~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k~~l~-----~~~l~~L~~Ll~d  101 (257)
T 3gs3_A           30 STKCELLAKVQETVLGSCAE-LA--EEFLESVLSLAHDSNMEVRKQVVAFVEQVCKVKVELL-----PHVINVVSMLLRD  101 (257)
T ss_dssp             HHHHHHHHHHHHHHTTTTGG-GH--HHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGH-----HHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHccCHh-HH--HHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHcC
Confidence            55666666666655543321 11  23677777777778889999999999888744 2222     2347888889998


Q ss_pred             CChhHHHHHHHHHHHh--------ccCcc------cHHHHH----HHHHHHhccCCHHHHHHHHHHHHHhh
Q 044999          274 PDSTGKEISEDVFCIL--------AVSEA------NANAIA----EHLVRILREGDNEANAAAADVLWDLA  326 (461)
Q Consensus       274 ~~~~~~~~a~~~L~~l--------~~~~~------~~~~i~----~~l~~ll~~~~~~~~~~a~~~L~~l~  326 (461)
                      .++.+.+.+..+..++        +.++.      ..+...    ..+++++.+.+..++..+++.+-.+.
T Consensus       102 ~d~~V~K~~I~~~~~iY~~~l~~i~~~~~~~~~~~~~W~~m~~lK~~Il~~~~s~n~gvkl~~iKF~e~vI  172 (257)
T 3gs3_A          102 NSAQVIKRVIQACGSIYKNGLQYLCSLMEPGDSAEQAWNILSLIKAQILDMIDNENDGIRTNAIKFLEGVV  172 (257)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHHHHHHHHGGGSSCHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHH
Confidence            8898888887766554        33332      122222    88889999999999999999888765

>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}

Probab=82.41  E-value=22  Score=30.29  Aligned_cols=150  Identities=13%  Similarity=0.138  Sum_probs=97.2

Q ss_pred             CCcHHHhHHHHHHHhhc---CCHHHHHHHHHHHHhhc-CCCchhHHHhhHHHHHHhhccCCCCCCCcHHHHHHHHHHHHH
Q 044999            5 DTNWEEAFNRFEQAVVS---GSEALQVKALTKLARVS-KFAPQDILAATIPILARLLGENNFSGNLTRSIQQAAAYCLKQ   80 (461)
Q Consensus         5 ~~~~~~~~~~l~~ll~~---~~~~~~~~a~~~l~~la-~~~~~~~l~~~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~   80 (461)
                      |.+.+...+.++.+++.   .....+.........++ +..+. .+.+.++.++.+..     + .+.++++..+.++..
T Consensus         7 ~~~~~~~~~~v~~lln~A~~~~~~~kl~~L~qa~el~~~~dp~-ll~~~l~~il~~~~-----~-~~~~vrk~~~~Fi~e   79 (257)
T 3gs3_A            7 DEKTATARAKVVDWCNELVIASPSTKCELLAKVQETVLGSCAE-LAEEFLESVLSLAH-----D-SNMEVRKQVVAFVEQ   79 (257)
T ss_dssp             --CHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTTTTGG-GHHHHHHHHHGGGG-----C-SCHHHHHHHHHHHHH
T ss_pred             ccccccHHHHHHHHHHHhhhcCcHHHHHHHHHHHHHHHccCHh-HHHHHHHHHHHhcc-----C-ChHHHHHHHHHHHHH
Confidence            34566677777777774   23478999999999988 65443 55668888888643     3 557788888899988


Q ss_pred             HHhcCCchhHHHHHhcCCHHHHHhcCCCCCHHHHHHHHHHHH--------HHhccChh--hHHHH--HHcCCHHHHHHHh
Q 044999           81 IASQADGALATEIGQSGVINSVLRLFPQSDDSFRTVLVKCLR--------VFVTFGNE--NRVIV--ARNGGLEIVIDLL  148 (461)
Q Consensus        81 l~~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~--------~l~~~~~~--~~~~~--~~~g~i~~L~~ll  148 (461)
                      .+.. ..+..     ...++.|..++++.++.+.+.+..+..        .++.....  .....  .-...-..++.++
T Consensus        80 ~~~~-k~~l~-----~~~l~~L~~Ll~d~d~~V~K~~I~~~~~iY~~~l~~i~~~~~~~~~~~~~W~~m~~lK~~Il~~~  153 (257)
T 3gs3_A           80 VCKV-KVELL-----PHVINVVSMLLRDNSAQVIKRVIQACGSIYKNGLQYLCSLMEPGDSAEQAWNILSLIKAQILDMI  153 (257)
T ss_dssp             HHHH-CGGGH-----HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHHHHHHHHGG
T ss_pred             HHHH-HHHHH-----HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHH
Confidence            8874 33332     234678888899989988777665554        22322210  01111  1122334566677


Q ss_pred             cCCChHHHHHHHHHHHHhh
Q 044999          149 NSCNDGTRRYLLEILSALA  167 (461)
Q Consensus       149 ~~~~~~~~~~a~~~L~~l~  167 (461)
                      .+.+..++..+++.+..+.
T Consensus       154 ~s~n~gvkl~~iKF~e~vI  172 (257)
T 3gs3_A          154 DNENDGIRTNAIKFLEGVV  172 (257)
T ss_dssp             GSSCHHHHHHHHHHHHHHH
T ss_pred             ccCCcchHHHHHHHHHHHH
Confidence            8888899999998777643

>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2

Probab=81.32  E-value=16  Score=28.05  Aligned_cols=72  Identities=10%  Similarity=0.153  Sum_probs=54.6

Q ss_pred             hHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHhcCCC------CCHHHHHHHHHHHH
Q 044999           49 TIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQADGALATEIGQSGVINSVLRLFPQ------SDDSFRTVLVKCLR  122 (461)
Q Consensus        49 ~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~ll~~------~~~~~~~~~~~~l~  122 (461)
                      ++..+.+-|++      .++.+|..|+..|-.+..+.....+..+....++..|+++++.      .++.|+..+...+.
T Consensus        39 a~rai~krl~~------~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~  112 (148)
T 1mhq_A           39 APWLLAHKIQS------PQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILF  112 (148)
T ss_dssp             HHHHHHHHHTC------SSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcC------CCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHH
Confidence            45666666665      4677888898888888885446788888888899999999874      36788888887777


Q ss_pred             HHhc
Q 044999          123 VFVT  126 (461)
Q Consensus       123 ~l~~  126 (461)
                      ..+.
T Consensus       113 ~W~~  116 (148)
T 1mhq_A          113 SWTV  116 (148)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6654

>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0

Probab=80.51  E-value=2.4  Score=32.45  Aligned_cols=70  Identities=3%  Similarity=0.107  Sum_probs=54.8

Q ss_pred             CHHHHHHhhcCCCHHHHHHHHHHHHHhcC--ChhhHHHHHhCCChHHHHHhccCCCHHHHHHHHHHHHHhcC
Q 044999          340 AIPILVNLLRGENDEVREKVSGAIAQLSY--NEADRVALADAGAVPIMIELLHDESEELRDNAAESLINFSE  409 (461)
Q Consensus       340 ~i~~L~~ll~~~~~~v~~~a~~~L~~l~~--~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~  409 (461)
                      ++..|.+-+.++++.++..|+..|-.+..  .+..+..+.+...+..|+.++...++.++..+...+...+.
T Consensus        43 a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~~  114 (140)
T 3ldz_A           43 CLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWTD  114 (140)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Confidence            45667778888899999999988888877  34555566666677778888877889999999999987764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	461
d1wa5b_	503	a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (S	4e-18
d1wa5b_	503	a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (S	0.003
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	5e-18
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	3e-14
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	1e-12
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	6e-11
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	2e-07
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	3e-07
d1q1sc_	434	a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus	9e-17
d1xm9a1	457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	1e-14
d1xm9a1	457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	8e-13
d1xm9a1	457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	6e-11
d1xm9a1	457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	4e-06
d1u6gc_	1207	a.118.1.2 (C:) Cullin-associated NEDD8-dissociated	2e-07
d1u6gc_	1207	a.118.1.2 (C:) Cullin-associated NEDD8-dissociated	3e-06
d1xqra1	264	a.118.1.21 (A:87-350) Hsp70-binding protein 1 (Hsp	7e-05
d1b3ua_	588	a.118.1.2 (A:) Constant regulatory domain of prote	7e-04
d1b3ua_	588	a.118.1.2 (A:) Constant regulatory domain of prote	0.004
d1ibrb_	458	a.118.1.1 (B:) Importin beta {Human (Homo sapiens)	0.002

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 503

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 84.4 bits (207), Expect = 4e-18
 Identities = 78/440 (17%), Positives = 149/440 (33%), Gaps = 39/440 (8%)

Query: 3   NPDTNWEEAFNRFEQAVVSGSEALQVKALTKLARV---SKFAPQDIL--AATIPILARLL 57
              +  ++   +  Q + S     Q+ A  K  ++       P D++  A  +P L   +
Sbjct: 69  QFYSQLQQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFM 128

Query: 58  GENNFSGNLTRSIQQAAAYCLKQIASQADGALATEIGQSGVINSVLRLFPQSDDSFRTVL 117
            EN         +Q  AA+ L  IAS    A    +  +  +   ++L        +   
Sbjct: 129 RENQ-----PEMLQLEAAWALTNIAS-GTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQA 182

Query: 118 VKCLRVFVTFGNENRVIVARNGGLEIVIDLLNSCNDGTRRYLLEILSALALLREVRRVLI 177
           +  L        + R  V +   +E ++ L NS      R     LS L   ++ +    
Sbjct: 183 IWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWS 242

Query: 178 CL-GGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRARRLLVELGVIPGLVELF--HIGD 234
            +   L  L + +      +   AC AI  L+   +     V    IP  +     H   
Sbjct: 243 VVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHEST 302

Query: 235 WTTKLVAGNTLGVVAAHVEYITPVAEAGAIPLYAELLQGPD-STGKEISEDVFCILAVSE 293
                       +V  +      V  AG +P    LL  P  +  KE    +  I A + 
Sbjct: 303 LVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNT 362

Query: 294 ANANAIAEHLV-----RILREGDNEANAAAADVLWDLAGYKHSVP----VIRNSGAIPIL 344
               A+ +  +     ++L   + +    A   + + +      P     + + G I  L
Sbjct: 363 EQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPL 422

Query: 345 VNLLRGENDEVREKVSGAIAQ-LSYNEADRVA-----------LADAGAVPIMIELLHDE 392
            +LL   ++ + E    A+   L   EAD+ A           +  AG +  +     +E
Sbjct: 423 CDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNE 482

Query: 393 SEELRDNAAESLIN--FSED 410
           ++++ +  A  +I   F E+
Sbjct: 483 NDKIYE-KAYKIIETYFGEE 501

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 503

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.8 bits (86), Expect = 0.003
 Identities = 20/93 (21%), Positives = 40/93 (43%), Gaps = 4/93 (4%)

Query: 341 IPILVNLLRGENDEVREKVSGAIAQLSYNEADRV--ALADAGAVPIMIEL-LHDESEELR 397
           +P +   L  ++ + +   +    Q+   E       +  AG VP ++E    ++ E L+
Sbjct: 78  LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQ 137

Query: 398 DNAAESLINF-SEDPLQHERISEAIGIPSFQSM 429
             AA +L N  S    Q + + +A  +P F  +
Sbjct: 138 LEAAWALTNIASGTSAQTKVVVDADAVPLFIQL 170

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 84.2 bits (206), Expect = 5e-18
 Identities = 40/180 (22%), Positives = 65/180 (36%), Gaps = 14/180 (7%)

Query: 229 LFHIGDWTTKLVAGNTLGVVAAHVEYITPVAEAGAIPLYAELLQGPDSTGKEISEDVFCI 288
           L     W         +  +A       P+ E GAIP   +LL           +D    
Sbjct: 364 LHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAH-------QDTQRR 416

Query: 289 LAVSEANANAIAEHLVRILREGDNEANAAAADVLWDLAGYKHSVPVIRNSGAIPILVNLL 348
            ++       +    +  + EG           L  LA   H+  VIR    IP+ V LL
Sbjct: 417 TSMGGTQQQFVEGVRMEEIVEG-------CTGALHILARDVHNRIVIRGLNTIPLFVQLL 469

Query: 349 RGENDEVREKVSGAIAQLSYNEADRVALADAGAVPIMIELLHDESEELRDNAAESLINFS 408
               + ++   +G + +L+ ++    A+   GA   + ELLH  +E +   AA  L   S
Sbjct: 470 YSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMS 529

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.2 bits (175), Expect = 3e-14
 Identities = 27/141 (19%), Positives = 61/141 (43%), Gaps = 4/141 (2%)

Query: 292 SEANANAIAEHLVRILREGDNEANAAAADVLWDLAGYKHS-VPVIRNSGAIPILVNLLRG 350
           +E    AI E L ++L + D      AA ++  L+  + S   ++R+   +  +V  ++ 
Sbjct: 12  AELATRAIPE-LTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQN 70

Query: 351 END-EVREKVSGAIAQLSYNEADRVALADAGAVPIMIELLHDESEELRDNAAESL-INFS 408
            ND E     +G +  LS++    +A+  +G +P ++++L    + +   A  +L     
Sbjct: 71  TNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLL 130

Query: 409 EDPLQHERISEAIGIPSFQSM 429
                   +  A G+    ++
Sbjct: 131 HQEGAKMAVRLAGGLQKMVAL 151

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.6 bits (163), Expect = 1e-12
 Identities = 65/440 (14%), Positives = 148/440 (33%), Gaps = 45/440 (10%)

Query: 28  VKALTKLARVSKFAPQDILAATIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQADG 87
              L  L+   +       +  IP L ++LG          S+   A   L  +      
Sbjct: 81  AGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPV------DSVLFYAITTLHNL-LLHQE 133

Query: 88  ALATEIGQSGVINSVLRLFPQSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDL 147
                +  +G +  ++ L  +++  F  +   CL++      E+++I+  +GG + ++++
Sbjct: 134 GAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNI 193

Query: 148 LNSCN-DGTRRYLLEILSALALLREVRRVLICLGGLRYLVEAVSFGSMVSRERACQAIGL 206
           + +   +        +L  L++    +  ++  GG++ L   ++  S    +     +  
Sbjct: 194 MRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRN 253

Query: 207 LAVTGRARRLLVELGVIPGLVELFHIGDWTTKLVAGNTLGVVAAHVEYITPVAEAGAIPL 266
           L+    A +     G++  LV+L    D      A   L  +  +      +        
Sbjct: 254 LS--DAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIE 311

Query: 267 YAELLQGPDSTGKEISEDVFCILAVSEA-------------NANAIAEHLVRILREGDNE 313
                       ++I+E   C L    +                 +   +  +       
Sbjct: 312 ALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWP 371

Query: 314 ANAAAADVLWDLAGYKHSVPVIRNSGAIPILVNLLRGENDEVR----------------- 356
              A   ++ +LA    +   +R  GAIP LV LL   + + +                 
Sbjct: 372 LIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVR 431

Query: 357 -----EKVSGAIAQLSYNEADRVALADAGAVPIMIELLHDESEELRDNAAESLINFSEDP 411
                E  +GA+  L+ +  +R+ +     +P+ ++LL+   E ++  AA  L   ++D 
Sbjct: 432 MEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDK 491

Query: 412 LQHERISEAIGIPSFQSMQS 431
              E I           +  
Sbjct: 492 EAAEAIEAEGATAPLTELLH 511

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.2 bits (149), Expect = 6e-11
 Identities = 43/206 (20%), Positives = 79/206 (38%), Gaps = 11/206 (5%)

Query: 260 EAGAIPLYAELLQGPDSTGKEISEDVFCILAVSEANANAIA------EHLVRILR-EGDN 312
              AIP   +LL   D      +  +   L+  EA+ +AI         +VR ++   D 
Sbjct: 15  ATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDV 74

Query: 313 EANAAAADVLWDLAGYKHSVPVIRNSGAIPILVNLLRGENDEVREKVSGAIA-QLSYNEA 371
           E     A  L +L+ ++  +  I  SG IP LV +L    D V       +   L + E 
Sbjct: 75  ETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEG 134

Query: 372 DRVALADAGAVPIMIELLHDESEELRDNAAESLINFSEDPLQHERISEAIGIPSFQSMQS 431
            ++A+  AG +  M+ LL+  + +      + L   +    + + I  A G         
Sbjct: 135 AKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASG---GPQALV 191

Query: 432 RLTRIRASDDLMARSMRRMSIEQLTW 457
            + R    + L+  + R + +  +  
Sbjct: 192 NIMRTYTYEKLLWTTSRVLKVLSVCS 217

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.7 bits (119), Expect = 2e-07
 Identities = 34/222 (15%), Positives = 71/222 (31%), Gaps = 10/222 (4%)

Query: 218 VELGVIPGLVELFHIGDWTTKLVAGNTLGVVAAHVEYITP-VAEAGAIPLYAELLQGP-D 275
           +    IP L +L +  D      A   +  ++         +     +      +Q   D
Sbjct: 14  LATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTND 73

Query: 276 STGKEISEDVFCILAVSEANANAIAEH-----LVRILREGDNEANAAAADVLWD-LAGYK 329
                 +      L+       AI +      LV++L    +     A   L + L   +
Sbjct: 74  VETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQE 133

Query: 330 HSVPVIRNSGAIPILVNLLRGENDEVREKVSGAIAQLSYNEADRVAL-ADAGAVPIMIEL 388
            +   +R +G +  +V LL   N +     +  +  L+Y   +   +   +G    ++ +
Sbjct: 134 GAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNI 193

Query: 389 L-HDESEELRDNAAESLINFSEDPLQHERISEAIGIPSFQSM 429
           +     E+L    +  L   S        I EA G+ +    
Sbjct: 194 MRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLH 235

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.7 bits (119), Expect = 3e-07
 Identities = 48/246 (19%), Positives = 96/246 (39%), Gaps = 10/246 (4%)

Query: 185 LVEAVSFGSMVSRERACQAIGLLAVTGRARRLLV-ELGVIPGLVELF-HIGDWTTKLVAG 242
           L + ++    V   +A   +  L+    +R  ++    ++  +V    +  D  T     
Sbjct: 22  LTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTA 81

Query: 243 NTLGVVAAHVEYITPVAEAGAIPLYAELLQGPDSTGKEISEDVFCILAVSEAN------A 296
            TL  ++ H E +  + ++G IP   ++L  P  +    +      L + +         
Sbjct: 82  GTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRL 141

Query: 297 NAIAEHLVRILREGDNEANAAAADVLWDLAGYKHSVPVI-RNSGAIPILVNLLRGENDE- 354
               + +V +L + + +  A   D L  LA       +I   SG    LVN++R    E 
Sbjct: 142 AGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEK 201

Query: 355 VREKVSGAIAQLSYNEADRVALADAGAVPIMIELLHDESEELRDNAAESLINFSEDPLQH 414
           +    S  +  LS   +++ A+ +AG +  +   L D S+ L  N   +L N S+   + 
Sbjct: 202 LLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ 261

Query: 415 ERISEA 420
           E +   
Sbjct: 262 EGMEGL 267

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 79.8 bits (195), Expect = 9e-17
 Identities = 77/419 (18%), Positives = 148/419 (35%), Gaps = 34/419 (8%)

Query: 17  QAVVSGSEALQVKALTKLARVSKFAPQD-----ILAATIPILARLLGENNFSGNLTRSIQ 71
           + + S +   Q++A     ++     Q      I A  IP     LG+ + S      IQ
Sbjct: 20  KGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCS-----PIQ 74

Query: 72  QAAAYCLKQIASQADGALATEIGQSGVINSVLRLFPQSDDSFRTVLVKCLRVFVTFGNEN 131
             +A+ L  IAS         +   G I + + L            V  L      G+  
Sbjct: 75  FESAWALTNIASGTS-EQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF 133

Query: 132 RVIVARNGGLEIVIDLLNSCNDGTRRYLLEILSALALLREVRRVLICL------GGLRYL 185
           R +V ++G ++ ++ LL   +  T            L    R              L  L
Sbjct: 134 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTL 193

Query: 186 VEAVSFGSMVSRERACQAIGLLAVTGRARRLL-VELGVIPGLVELFHIGDWTTKLVAGNT 244
           V  +          +C AI  L      R  + V+ GV+P LV+L    +      A   
Sbjct: 194 VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA 253

Query: 245 LGVVAAHVEYITPVA-EAGAIPLYAELLQGPDSTGKEISEDVFCILAVSEAN------AN 297
           +G +    +  T    +AGA+ ++  LL  P +  ++ +      +     +       +
Sbjct: 254 IGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNH 313

Query: 298 AIAEHLVRILREGDNEANAAAADVLWDLA--GYKHSVPVIRNSGAIPILVNLLRGENDEV 355
            +   LV +L + D +    AA  + +    G    +  + + G I  L+NLL  ++ ++
Sbjct: 314 GLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKI 373

Query: 356 REKVSGAI-------AQLSYNEADRVALADAGAVPIMIELLHDESEELRDNAAESLINF 407
            + +  AI        +L   E   + + + G +  +  L   E+E +   +   +  +
Sbjct: 374 IQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKY 432

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.3 bits (178), Expect = 1e-14
 Identities = 66/410 (16%), Positives = 126/410 (30%), Gaps = 23/410 (5%)

Query: 49  TIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQADGALATEIGQSGVINSVLRLFPQ 108
           TIP   + L   +         Q   AY ++    Q + A   ++ Q G I  ++ L   
Sbjct: 3   TIPKAVQYLSSQD------EKYQAIGAYYIQHTCFQDESA-KQQVYQLGGICKLVDLLRS 55

Query: 109 SDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLNSCN-DGTRRYLLEILSALA 167
            + + +      LR  V     N++   R  G+   + LL        ++ L  +L  L+
Sbjct: 56  PNQNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLS 115

Query: 168 LLREVRRVLICLGGLRYLVEAVSFGSMVSRERACQA--IGLLAVTGRARRLLVELGVIPG 225
              E++  LI           +   S      +  +  +    V   A   L  L     
Sbjct: 116 STDELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADA 175

Query: 226 LVELFHIGDWTTKLVAGNTLGVVAAHVEYITPVAEAGAIPLYAELLQGPDSTGKEISEDV 285
             +           +       VAA       V           +L              
Sbjct: 176 GRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENC------MCVLHNLSYRLDAEVPTR 229

Query: 286 FCILAVSEANANAIAEHLVRILREGDNEANAAAADVLWDLAGYKHSVPVIRNSGAIPILV 345
           +  L  +  NA            + D   N      L +          + +S AI   +
Sbjct: 230 YRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYL 289

Query: 346 NLL-RGENDEVREKVSGAIAQLSYN------EADRVALADAGAVPIMIELLHDESEELRD 398
           NL+ + + D   E  +GA+  L+ +         ++       +P +  LL   + ++  
Sbjct: 290 NLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVR 349

Query: 399 NAAESLINFSEDPLQHERISEAIGIPSFQSMQSRLTRIRASDDLMARSMR 448
           + A  L N S  PL H  +   +     + + S       S+D+++ +  
Sbjct: 350 SGASLLSNMSRHPLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACY 399

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.9 bits (164), Expect = 8e-13
 Identities = 26/155 (16%), Positives = 52/155 (33%), Gaps = 3/155 (1%)

Query: 301 EHLVRILREGDNEANAAAADVLWDLAGYKHSVPV-IRNSGAIPILVNLLRGENDEVREKV 359
              V+ L   D +  A  A  +        S    +   G I  LV+LLR  N  V++  
Sbjct: 5   PKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAA 64

Query: 360 SGAIAQLSY-NEADRVALADAGAVPIMIEL-LHDESEELRDNAAESLINFSEDPLQHERI 417
           +GA+  L + +  +++       +   + L     + E++      L N S      E +
Sbjct: 65  AGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEEL 124

Query: 418 SEAIGIPSFQSMQSRLTRIRASDDLMARSMRRMSI 452
                      +    +     +  M+R +    +
Sbjct: 125 IADALPVLADRVIIPFSGWCDGNSNMSREVVDPEV 159

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.8 bits (148), Expect = 6e-11
 Identities = 51/447 (11%), Positives = 126/447 (28%), Gaps = 64/447 (14%)

Query: 21  SGSEALQVKA---LTKLARVSKFAPQDILAA-TIPILARLLGENNFSGNLTRSIQQAAAY 76
           S  E  Q      +       + A Q +     I  L  LL   N      +++QQAAA 
Sbjct: 13  SQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPN------QNVQQAAAG 66

Query: 77  CLKQIASQADGALATEIGQSGVINSVLRLFPQSDDSFRTVLVKCLRVFVTFGNENRVIVA 136
            L+ +  ++      E  +   I   + L  ++ ++     +  L   ++  +E +  + 
Sbjct: 67  ALRNLVFRSTTN-KLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELI 125

Query: 137 RNGGLEIVIDLL---------------NSCNDGTRRYLLEILSALALLREVRRVLICLGG 181
            +    +   ++                  +          L  L+     R+ +    G
Sbjct: 126 ADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNYSG 185

Query: 182 LRYLVEAVSFGSMVSRERACQAIGLLAVTGRARRLLVELGVIPGLVEL------------ 229
           L   + A     + +     +++             ++  V     +L            
Sbjct: 186 LIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKS 245

Query: 230 -----FHIGDWTTKLVAGNTLGVVAAHVEYITPVAEAGAIPLYAELLQGPDSTGKEISED 284
                 +  D          L     + +    +  + AI  Y  L+          +  
Sbjct: 246 STGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACA 305

Query: 285 VFCILAVSEANANAIA------------EHLVRILREGDNEANAAAADVLWDLAGYKHSV 332
                  +     +                + R+L+ G+++   + A +L +++ +    
Sbjct: 306 GALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLH 365

Query: 333 PVIRNSGAIPILVNLLRG------ENDEVREKVSGAIAQLSYNEAD-RVALADAGAVPIM 385
            V+ N    P +  LL         ++++       +  L  ++         +  +  +
Sbjct: 366 RVMGN-QVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNI 424

Query: 386 IELLHD-ESEELRDNAAESLINFSEDP 411
           I L     S +  + A   L +     
Sbjct: 425 INLCRSSASPKAAEAARLLLSDMWSSK 451

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.7 bits (109), Expect = 4e-06
 Identities = 23/243 (9%), Positives = 65/243 (26%), Gaps = 14/243 (5%)

Query: 146 DLLNSCNDGTRRYLLEILSALALLREVRRVLICLGGLRYLVEAVSFGSMVSRERACQAIG 205
           +L    +        ++          +    C       +   ++   +  E       
Sbjct: 217 NLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGS 276

Query: 206 LLAVTGRARRLLVELGVIPGLVELFHIGDWTTKLVAGNTLGVVAAHVEYITPVAEAGAIP 265
                  A R  + L                 + +  +   + +   + I    +   +P
Sbjct: 277 GWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLI--GLKEKGLP 334

Query: 266 LYAELLQGPDSTGKEISEDVFCILAVSEANANAIAEH----LVRILREGDN------EAN 315
             A LLQ  +S        +   ++        +       + R+L           +  
Sbjct: 335 QIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDIL 394

Query: 316 AAAADVLWDLA-GYKHSVPVIRNSGAIPILVNLLRG-ENDEVREKVSGAIAQLSYNEADR 373
           ++A   + +L            +S  +  ++NL R   + +  E     ++ +  ++  +
Sbjct: 395 SSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSSKELQ 454

Query: 374 VAL 376
             L
Sbjct: 455 GVL 457

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.3 bits (121), Expect = 2e-07
 Identities = 42/319 (13%), Positives = 85/319 (26%), Gaps = 19/319 (5%)

Query: 96   SGVINSVLRLFPQSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLNSCNDGT 155
            SG I + L    +S       L   L  F          +     L ++   + S +   
Sbjct: 728  SGSILNELIGLVRSPLLQGGALSAMLDFFQALVVTGTNNLGYMDLLRMLTGPVYSQSTAL 787

Query: 156  RRYLLEILSALALLREVRRVLICLGGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRARR 215
                     A  +    R        +          S  +      A+  L   G    
Sbjct: 788  THKQSYYSIAKCVAALTRACPKEGPAVVGQFIQDVKNSRSTDSIRLLALLSLGEVGHHID 847

Query: 216  LLVELGVIPGLVELFHIGDWTTKLVAGNTLGVVAAHVEYITPVAEAGAIPLYAELLQGPD 275
            L  +L +   ++E F       K  A   LG ++              +P   + +    
Sbjct: 848  LSGQLELKSVILEAFSSPSEEVKSAASYALGSISVG-------NLPEYLPFVLQEITSQP 900

Query: 276  STGKEISEDVFCILAVS-----EANANAIAEHLVRILREGDNEANAAAADVLWDLAGYKH 330
                 +   +  I++ +     +     I   L++     +       A+ L  L     
Sbjct: 901  KRQYLLLHSLKEIISSASVVGLKPYVENIWALLLKHCECAEEGTRNVVAECLGKLT---- 956

Query: 331  SVPVIRNSGAIPILVNLLRGENDEVREKVSGAIAQLSYNEADRVALADAGAVPIMIELLH 390
               +I     +P L   L   +   R  V  A+     +    +       +   ++ L 
Sbjct: 957  ---LIDPETLLPRLKGYLISGSSYARSSVVTAVKFTISDHPQPIDPLLKNCIGDFLKTLE 1013

Query: 391  DESEELRDNAAESLINFSE 409
            D    +R  A  +  + + 
Sbjct: 1014 DPDLNVRRVALVTFNSAAH 1032

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.4 bits (111), Expect = 3e-06
 Identities = 48/433 (11%), Positives = 130/433 (30%), Gaps = 34/433 (7%)

Query: 31  LTKLARVSKFAPQDILAATIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQADGALA 90
           +T+L + S     D     + ++ +LL + N        +Q  A  CL  + S+      
Sbjct: 28  MTELQKDSIKLDDDSERKVVKMILKLLEDKNGE------VQNLAVKCLGPLVSKVKEYQV 81

Query: 91  TEIGQSGVINSVLRLFPQSDDSFRTVLVKCLR-VFVTFGNENRVIVARNGGLEIVIDLLN 149
             I     ++++        +  R +    L+ V       +          + +   L 
Sbjct: 82  ETI-----VDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLT 136

Query: 150 SC-----NDGTRRYLLEILSALA--LLREVRRVLICLGGLRYLVEAVSFGSMVSRERACQ 202
           S      +   +   L+I++ +       +      +  L  L+  ++   +  R+R   
Sbjct: 137 SAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSI--LTCLLPQLTSPRLAVRKRTII 194

Query: 203 AIGLLAVTGRARRLLVELGVIPGLVELFHIGDWTTKLVAGNTLGVVAAHVEYITPVAEAG 262
           A+G L ++     ++    +   L EL      +T       +  ++    +        
Sbjct: 195 ALGHLVMS--CGNIVFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEK 252

Query: 263 AIPLYAELLQGPDSTGKEISEDVFCILAVS-----EANANAIAEHLVRILREGDNEANAA 317
            IPL  +     D   +E     F             + + I    ++ L    N     
Sbjct: 253 IIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDD 312

Query: 318 AADVLWDLAGYKHSVPVIRNSGAIPILVNLLRGENDEVREKVSGAIAQLSYNEADRVALA 377
             +    +                    +     + +VR   +  +  +     + +   
Sbjct: 313 EDEDENAMDADGGDDDDQ----GSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEF 368

Query: 378 DAGAVPIMIELLHDESEELRDNAAESLINFSEDPLQHERISEAIGIPSFQSMQSRLTRIR 437
                P +I    +  E ++ +   + ++  +        S      + +  ++ LT ++
Sbjct: 369 YKTVSPALISRFKEREENVKADVFHAYLSLLKQ--TRPVQSWLCDPDAMEQGETPLTMLQ 426

Query: 438 ASDDLMARSMRRM 450
           +    + +++ + 
Sbjct: 427 SQVPNIVKALHKQ 439

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 264

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.9 bits (97), Expect = 7e-05
 Identities = 38/217 (17%), Positives = 70/217 (32%), Gaps = 15/217 (6%)

Query: 197 RERACQAIGLLAVTGRARRLLVELGVIPGLVELF-HIGDWTTKLVAGNTLG-VVAAHVEY 254
           RE A + +  L           +L  +  LV  +   G    +  A   +G         
Sbjct: 34  REGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAI 93

Query: 255 ITPVAEAGAIPLYAELLQ--GPDSTGKEISEDVFCILAVSEANAN--------AIAEHLV 304
              V   GA+     LL     D+   +    + C++   EA           ++    +
Sbjct: 94  QEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAM 153

Query: 305 RILREGDNEANAAAADVLWDLAGYKHSVPVIRNSGAIPILVNLLRGENDEVREKVSGAIA 364
           +   +     +A     L    G+      + + G +  LV L+R E+    E V GA+ 
Sbjct: 154 QQQVQKLKVKSAFLLQNLL--VGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALC 211

Query: 365 QLSYNEADRVALADAGAVPIMIELLHDESEELRDNAA 401
            L  +    V       +  + ELL    + L+ +  
Sbjct: 212 SLVTDFPQGVRECREPEL-GLEELLRHRCQLLQQHEE 247

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.8 bits (91), Expect = 7e-04
 Identities = 27/182 (14%), Positives = 60/182 (32%), Gaps = 9/182 (4%)

Query: 226 LVELFHIGDWTTKLVAGNTLGVVAAHVEYITPVAEAGAIPLYAELLQGPDSTGKEISEDV 285
           +VEL     W  +L     + ++A  +       +     L    L       +E +   
Sbjct: 407 IVELAEDAKWRVRLAIIEYMPLLAGQLG--VEFFDEKLNSLCMAWLVDHVYAIREAATSN 464

Query: 286 FCILAV---SEANANAIAEHLVRILREGDNEANAAAADVLWDLAGYKHSVPVIRNSGAIP 342
              L      E     I   ++ +  + +          +  L+  +     I     +P
Sbjct: 465 LKKLVEKFGKEWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLS--EVCGQDITTKHMLP 522

Query: 343 ILVNLLRGENDEVREKVSGAIAQLSYNEADRVALADAGAVPIMIELLHDESEELRDNAAE 402
            ++ +       VR  V+ ++ ++     D   L      PI+ +L  D+  +++  A E
Sbjct: 523 TVLRMAGDPVANVRFNVAKSLQKI-GPILDNSTLQSE-VKPILEKLTQDQDVDVKYFAQE 580

Query: 403 SL 404
           +L
Sbjct: 581 AL 582

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.1 bits (84), Expect = 0.004
 Identities = 26/153 (16%), Positives = 53/153 (34%), Gaps = 17/153 (11%)

Query: 307 LREGDNEANAAAADVLWDLA---GYKHSVPVIRNSGAIPILVNLLRGENDEVREKVSGAI 363
           LR  D +    +   L  +A   G + +   +     +P L + +  + DEV   ++  +
Sbjct: 19  LRNEDVQLRLNSIKKLSTIALALGVERTRSEL-----LPFLTDTIY-DEDEVLLALAEQL 72

Query: 364 AQLS---YNEADRVALADAGAVPIMIELLHDESEELRDNAAESLINFSEDPLQHERISEA 420
              +           L     +P +  L   E   +RD A ESL   S +    +  +  
Sbjct: 73  GTFTTLVGGPEYVHCL-----LPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHF 127

Query: 421 IGIPSFQSMQSRLTRIRASDDLMARSMRRMSIE 453
           + +    +     T   ++  L +    R+S  
Sbjct: 128 VPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSA 160

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 458

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.2 bits (87), Expect = 0.002
 Identities = 21/112 (18%), Positives = 42/112 (37%), Gaps = 3/112 (2%)

Query: 311 DNEANAAAADVLWDLAGYKHSVPVIRNSGAIPILVNLLRGENDEVREKVSGAIAQLSYN- 369
           D+     AA V   L        ++ +   +P +   ++  +   R+    A   +    
Sbjct: 339 DDWNPCKAAGVCLMLLATCCEDDIVPHV--LPFIKEHIKNPDWRYRDAAVMAFGCILEGP 396

Query: 370 EADRVALADAGAVPIMIELLHDESEELRDNAAESLINFSEDPLQHERISEAI 421
           E  ++      A+P +IEL+ D S  +RD AA ++    E   +       +
Sbjct: 397 EPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYL 448

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	461
d1jdha_	529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1q1sc_	434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	100.0
d1jdha_	529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1q1sc_	434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	100.0
d1wa5b_	503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	100.0
d1wa5b_	503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	100.0
d1xm9a1	457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	99.96
d1xm9a1	457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	99.95
d1b3ua_	588	Constant regulatory domain of protein phosphatase	99.85
d1xqra1	264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	99.81
d1xqra1	264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	99.79
d1b3ua_	588	Constant regulatory domain of protein phosphatase	99.76
d2vglb_	579	Adaptin beta subunit N-terminal fragment {Human (H	99.64
d2vglb_	579	Adaptin beta subunit N-terminal fragment {Human (H	99.64
d1qbkb_	888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	99.4
d2vgla_	584	Adaptin alpha C subunit N-terminal fragment {Mouse	99.32
d1qbkb_	888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	99.26
d2vgla_	584	Adaptin alpha C subunit N-terminal fragment {Mouse	99.24
d1oyza_	276	Hypothetical protein YibA {Escherichia coli [TaxId	99.24
d1ibrb_	458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	99.24
d1u6gc_	1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	99.24
d1u6gc_	1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	99.18
d1ibrb_	458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	99.17
d1oyza_	276	Hypothetical protein YibA {Escherichia coli [TaxId	99.11
d2bpta1	861	Importin beta {Baker's yeast (Saccharomyces cerevi	99.1
d1ho8a_	477	Regulatory subunit H of the V-type ATPase {Baker's	99.04
d1qgra_	876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	98.99
d1qgra_	876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	98.97
d2bpta1	861	Importin beta {Baker's yeast (Saccharomyces cerevi	98.94
d1ho8a_	477	Regulatory subunit H of the V-type ATPase {Baker's	98.74
d1te4a_	111	MTH187 {Archaeon Methanobacterium thermoautotrophi	98.23
d1te4a_	111	MTH187 {Archaeon Methanobacterium thermoautotrophi	97.94
d1upka_	330	Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}	97.91
d1upka_	330	Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}	97.46
d1lrva_	233	Leucine-rich repeat variant {Azotobacter vinelandi	97.46
d1lrva_	233	Leucine-rich repeat variant {Azotobacter vinelandi	97.33
d1lsha1	336	Lipovitellin-phosvitin complex, superhelical domai	96.25
d1lsha1	336	Lipovitellin-phosvitin complex, superhelical domai	95.37
d1wa5c_	959	Exportin Cse1p {Baker's yeast (Saccharomyces cerev	95.37
d2bnxa1	343	Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {	91.88
d2bnxa1	343	Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {	90.54
d1wa5c_	959	Exportin Cse1p {Baker's yeast (Saccharomyces cerev	88.84

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.9e-38  Score=308.88  Aligned_cols=432  Identities=18%  Similarity=0.197  Sum_probs=371.3

Q ss_pred             HHhHHHHHHHhhcCCHHHHHHHHHHHHhhc-CCCchhHHHh---hHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHhc
Q 044999            9 EEAFNRFEQAVVSGSEALQVKALTKLARVS-KFAPQDILAA---TIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQ   84 (461)
Q Consensus         9 ~~~~~~l~~ll~~~~~~~~~~a~~~l~~la-~~~~~~~l~~---~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~   84 (461)
                      ..++|.|+++++++|..++..|+..++.++ ++..+..+..   +++.++++|+.    . ++++.++.|+.+|.+++. 
T Consensus        16 ~~aip~L~~lL~~~~~~v~~~A~~~l~~l~~~~~~~~~~~~~~~~v~~l~~~L~~----~-~~~~~~~~a~~~L~~l~~-   89 (529)
T d1jdha_          16 TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQN----T-NDVETARCTAGTLHNLSH-   89 (529)
T ss_dssp             -CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHH----C-CCHHHHHHHHHHHHHHTT-
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccHHHHHHHHhhhHHHHHHHHHcC----C-CCHHHHHHHHHHHHHHhC-
Confidence            456899999999999999999999999999 7777776655   79999999985    3 457788889999999998 


Q ss_pred             CCchhHHHHHhcCCHHHHHhcCCCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHH
Q 044999           85 ADGALATEIGQSGVINSVLRLFPQSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLNSCNDGTRRYLLEILS  164 (461)
Q Consensus        85 ~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~  164 (461)
                       +++.+..+.+.|+++.|+++|++++++++..++.++.+++.+++..+..+.+.|+++.|+++++++++.++..++.++.
T Consensus        90 -~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~  168 (529)
T d1jdha_          90 -HREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQ  168 (529)
T ss_dssp             -SHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHH
T ss_pred             -CchhHHHHHHCCCHHHHHHHhCCCCHHHHHHHHHHHHHhhcccchhhhHHHhcCCchHHHHHHHccChHHHHHHHHHHH
Confidence             8888899999999999999999999999999999999999988889999999999999999999999999999999999


Q ss_pred             Hhh-CChHHHHHHHhcCCHHHHHHHHcCC-CHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhcccCCHHHHHHHH
Q 044999          165 ALA-LLREVRRVLICLGGLRYLVEAVSFG-SMVSRERACQAIGLLAVTGRARRLLVELGVIPGLVELFHIGDWTTKLVAG  242 (461)
Q Consensus       165 ~l~-~~~~~~~~~~~~~~l~~l~~~l~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~  242 (461)
                      +++ .+++.+..+.+.|+++.++.++.+. +..++..++.++.+++...+.+..+.+.|+++.|+.++.+++.+++..++
T Consensus       169 ~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~l~~ls~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~  248 (529)
T d1jdha_         169 ILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCL  248 (529)
T ss_dssp             HHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHH
T ss_pred             HHhhhhhHHHHHHHhcccchHHHHHHHhhhhHHHHHHHHHHHhhhhccccccchhhhhhhhhhHHHHhcccchhhhhhhh
Confidence            999 6677788888999999999999765 56899999999999999888899999999999999999999999999999


Q ss_pred             HHHHHHhcCccchhhhhhcCCHHHHHHHhCCCChhHHHHHHHHHHHhccCc-ccHHHHH---------------------
Q 044999          243 NTLGVVAAHVEYITPVAEAGAIPLYAELLQGPDSTGKEISEDVFCILAVSE-ANANAIA---------------------  300 (461)
Q Consensus       243 ~~L~~l~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~-~~~~~i~---------------------  300 (461)
                      +++.+++.....  .....|+++.|+.++.++++.++..++.+|.+++..+ +++..+.                     
T Consensus       249 ~~l~~ls~~~~~--~~~~~~~i~~Lv~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Li~~l~~~~~~~~~  326 (529)
T d1jdha_         249 WTLRNLSDAATK--QEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDI  326 (529)
T ss_dssp             HHHHHHHTTCTT--CSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHH
T ss_pred             hHHHhccccccc--hhhhhhcchhhhhhcccccHHHHHHHHHHHHhhccchhHHHHHHHHhhhHHHHHHHHHhhhcchhH
Confidence            999999865322  2334577899999998888888888888888886433 2222111                     


Q ss_pred             -------------------------------HHHHHHhccC-CHHHHHHHHHHHHHhhCCCCchhHHhhcCCHHHHHHhh
Q 044999          301 -------------------------------EHLVRILREG-DNEANAAAADVLWDLAGYKHSVPVIRNSGAIPILVNLL  348 (461)
Q Consensus       301 -------------------------------~~l~~ll~~~-~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~ll  348 (461)
                                                     +.+++++..+ +..++..++.++++++.+++++..+.+.|+++.|++++
T Consensus       327 ~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~~~~~~~~~l~~l~~~~~~~~~l~~~g~i~~L~~lL  406 (529)
T d1jdha_         327 TEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLL  406 (529)
T ss_dssp             HHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHH
T ss_pred             HHHHHHHhhcccchhhcchhhhhhHHhcccchhHHHHHhccchHHHHHHHHHHHhhcchhhhhhhhhhhcccHHHHHHHH
Confidence                                           4455566544 35677788889999998888899999999999999998


Q ss_pred             cCCC----------------------HHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhccCCCHHHHHHHHHHHHH
Q 044999          349 RGEN----------------------DEVREKVSGAIAQLSYNEADRVALADAGAVPIMIELLHDESEELRDNAAESLIN  406 (461)
Q Consensus       349 ~~~~----------------------~~v~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~  406 (461)
                      .+++                      .++...++.++..++..+.++..+.+.|+++.|++++.++++.++..++++|.+
T Consensus       407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~la~~~~~r~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~  486 (529)
T d1jdha_         407 VRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCE  486 (529)
T ss_dssp             HHHHHHHC-----------CBTTBCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHH
T ss_pred             hcCCHHHHHHHHhhhhhHHhhcccchHHHHHHHHHHHHHHccCHHHHHHHHHCCCHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            6533                      346667788899999988889999999999999999999999999999999999


Q ss_pred             hcCCCcchHHHHHhhCCchHHhHHHHHHHhhhchhHHHHHHHHHhHhhhc
Q 044999          407 FSEDPLQHERISEAIGIPSFQSMQSRLTRIRASDDLMARSMRRMSIEQLT  456 (461)
Q Consensus       407 l~~~~~~~~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~  456 (461)
                      |+.+++.++.+.+.|+++.+.++++      + .++.+++.+..++.+++
T Consensus       487 L~~~~~~~~~i~~~g~~~~L~~Ll~------s-~n~~v~~~a~~aL~~ls  529 (529)
T d1jdha_         487 LAQDKEAAEAIEAEGATAPLTELLH------S-RNEGVATYAAAVLFRMS  529 (529)
T ss_dssp             HTTSHHHHHHHHHTTCHHHHHHGGG------C-SSHHHHHHHHHHHHHHC
T ss_pred             HhcChhhHHHHHHCCCHHHHHHHhC------C-CCHHHHHHHHHHHHHhC
Confidence            9999999999999888888777764      3 47789999998888775

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.8e-33  Score=269.04  Aligned_cols=400  Identities=19%  Similarity=0.246  Sum_probs=343.0

Q ss_pred             CCCCCCcHHHhHHHHHHHhhcCCHHHHHHHHHHHHhhc-CCC--chhHHHh--hHHHHHHhhccCCCCCCCcHHHHHHHH
Q 044999            1 MGNPDTNWEEAFNRFEQAVVSGSEALQVKALTKLARVS-KFA--PQDILAA--TIPILARLLGENNFSGNLTRSIQQAAA   75 (461)
Q Consensus         1 ~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~la-~~~--~~~~l~~--~i~~l~~~l~~~~~~~~~~~~~~~~a~   75 (461)
                      ||+++......++.+++.+.+++++.+..|+..+.++. .+.  ..+.+.+  ++|.|+++|++     ++++.+|..++
T Consensus         4 ~~~~~~~~~~~i~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~i~~~g~i~~Lv~lL~~-----~~~~~v~~~a~   78 (434)
T d1q1sc_           4 IGSNQGTVNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGK-----TDCSPIQFESA   78 (434)
T ss_dssp             CCSTTSSSSCCHHHHHHHHTSSCHHHHHHHHHHHHHHHHSSSCCCHHHHHHTTCHHHHHHHTTC-----GGGHHHHHHHH
T ss_pred             cccccchhhhhHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHcc-----CCCHHHHHHHH
Confidence            57777788889999999999999999999999999886 333  2445555  89999999974     35678898999


Q ss_pred             HHHHHHHhcCCchhHHHHHhcCCHHHHHhcCCCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhcCCCh--
Q 044999           76 YCLKQIASQADGALATEIGQSGVINSVLRLFPQSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLNSCND--  153 (461)
Q Consensus        76 ~~L~~l~~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~--  153 (461)
                      ++|.+++.. +......+.+.|+++.++++|+++++.++..+++++.+++.++++.+..+.+.|+++.++.++...+.  
T Consensus        79 ~~L~~la~~-~~~~~~~i~~~~~i~~l~~~L~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~~~~l~~~l~~~~~~~  157 (434)
T d1q1sc_          79 WALTNIASG-TSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLST  157 (434)
T ss_dssp             HHHHHHHTS-CHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGG
T ss_pred             HHHHHHhcC-ChhhhhHhhhccchhhhhhccccCCHHHHHHHHHHHHHHhccchHHHHHHHHhhhhhHHHHHHHhccccc
Confidence            999999985 66778889999999999999999999999999999999999888999999999999999999987653  


Q ss_pred             ---HHHHHHHHHHHHhhCCh-HHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCchh-HHHHHhcCChHHHHH
Q 044999          154 ---GTRRYLLEILSALALLR-EVRRVLICLGGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRA-RRLLVELGVIPGLVE  228 (461)
Q Consensus       154 ---~~~~~a~~~L~~l~~~~-~~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~-~~~~~~~~~i~~L~~  228 (461)
                         .....+...+.+++.+. .........++++.++.++.+++++++..+++++.+++..++. ...+...|+++.++.
T Consensus       158 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~Lv~  237 (434)
T d1q1sc_         158 LACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVK  237 (434)
T ss_dssp             SCHHHHHHHHHHHHHHTCCCTTCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHH
T ss_pred             chHHHHHHHHHHHHHHhhcccccchhhhhhhHHHHHHHHHhccccchhhhHHhhhcccchhhhhhHHHHhhcccchhccc
Confidence               34566777888888543 3333444567899999999999999999999999999988776 667778999999999


Q ss_pred             hcccCCHHHHHHHHHHHHHHhcC-ccchhhhhhcCCHHHHHHHhCCCChhHHHHHHHHHHHhccCccc-HHHHH-----H
Q 044999          229 LFHIGDWTTKLVAGNTLGVVAAH-VEYITPVAEAGAIPLYAELLQGPDSTGKEISEDVFCILAVSEAN-ANAIA-----E  301 (461)
Q Consensus       229 ll~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~-~~~i~-----~  301 (461)
                      ++.++++.++..++.+|.+++.. ++.+..+.+.|+++.+..++.+.+++++..++.+|.+++..... ...+.     +
T Consensus       238 ll~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~  317 (434)
T d1q1sc_         238 LLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVP  317 (434)
T ss_dssp             HHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHH
T ss_pred             ccccchhhhhhchhhhhhhHHhhhhHHHHHHHhccccchHHHhhcccchhhhHHHHHHHhhhccccchhHHHHhhhhhHH
Confidence            99999999999999999999987 56778888999999999999999999999999999999875544 33333     8


Q ss_pred             HHHHHhccCCHHHHHHHHHHHHHhhCC--CCchhHHhhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcC-------Chhh
Q 044999          302 HLVRILREGDNEANAAAADVLWDLAGY--KHSVPVIRNSGAIPILVNLLRGENDEVREKVSGAIAQLSY-------NEAD  372 (461)
Q Consensus       302 ~l~~ll~~~~~~~~~~a~~~L~~l~~~--~~~~~~l~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~-------~~~~  372 (461)
                      .+++++.+++++++..|+++|.+++..  ++....+.+.|+++.|++++.+.+++++..++.+|.++..       ++..
T Consensus       318 ~li~~l~~~~~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~ll~~~d~~~~~~~l~~l~~ll~~~~~~~~~~~~  397 (434)
T d1q1sc_         318 FLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKL  397 (434)
T ss_dssp             HHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHTTTCHHHH
T ss_pred             HHHHHHhccChHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhcCCcHHH
Confidence            999999999999999999999999954  4556778899999999999999999999999999998864       2234


Q ss_pred             HHHHHhCCChHHHHHhccCCCHHHHHHHHHHHHH
Q 044999          373 RVALADAGAVPIMIELLHDESEELRDNAAESLIN  406 (461)
Q Consensus       373 ~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~  406 (461)
                      +..+.+.|+++.|-.+..+++++++..|...|-+
T Consensus       398 ~~~~~~~~~~~~i~~L~~~~n~~i~~~a~~il~~  431 (434)
T d1q1sc_         398 SIMIEECGGLDKIEALQRHENESVYKASLNLIEK  431 (434)
T ss_dssp             HHHHHHTTSHHHHHHHHTCSSHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence            6677889999999888888999999999988854

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.1e-33  Score=272.92  Aligned_cols=392  Identities=18%  Similarity=0.243  Sum_probs=337.1

Q ss_pred             HhHHHHHHHhhc-CCHHHHHHHHHHHHhhc-CCCchhHHHh--hHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHhcC
Q 044999           10 EAFNRFEQAVVS-GSEALQVKALTKLARVS-KFAPQDILAA--TIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQA   85 (461)
Q Consensus        10 ~~~~~l~~ll~~-~~~~~~~~a~~~l~~la-~~~~~~~l~~--~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~   85 (461)
                      +.++.+++++.+ .+..++..|+.+|.+++ ++..+..+.+  +++.|+++|++      .+++++..|+.+|.+++.+ 
T Consensus        59 ~~v~~l~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~Li~lL~~------~~~~v~~~a~~aL~~l~~~-  131 (529)
T d1jdha_          59 QMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGS------PVDSVLFYAITTLHNLLLH-  131 (529)
T ss_dssp             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHTTC------SCHHHHHHHHHHHHHHHHH-
T ss_pred             hHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhHHHHHHCCCHHHHHHHhCC------CCHHHHHHHHHHHHHhhcc-
Confidence            467889999976 57899999999999999 7878777777  89999999986      5678999999999999986 


Q ss_pred             CchhHHHHHhcCCHHHHHhcCCCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhcCC-ChHHHHHHHHHHH
Q 044999           86 DGALATEIGQSGVINSVLRLFPQSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLNSC-NDGTRRYLLEILS  164 (461)
Q Consensus        86 ~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~-~~~~~~~a~~~L~  164 (461)
                      ++..+..+.+.|+++.|+++++++++.++..++.++.+++..+.+.+..+...|+++.++.++.+. .+.++..+..++.
T Consensus       132 ~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~l~  211 (529)
T d1jdha_         132 QEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLK  211 (529)
T ss_dssp             CTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred             cchhhhHHHhcCCchHHHHHHHccChHHHHHHHHHHHHHhhhhhHHHHHHHhcccchHHHHHHHhhhhHHHHHHHHHHHh
Confidence            677888888999999999999999999999999999999988888999999999999999999655 4578899999999


Q ss_pred             HhhCChHHHHHHHhcCCHHHHHHHHc---------------------------------------CCCHHHHHHHHHHHH
Q 044999          165 ALALLREVRRVLICLGGLRYLVEAVS---------------------------------------FGSMVSRERACQAIG  205 (461)
Q Consensus       165 ~l~~~~~~~~~~~~~~~l~~l~~~l~---------------------------------------~~~~~~~~~a~~~L~  205 (461)
                      +++.+++++..+.+.|+++.++.++.                                       +++..++..++.+|+
T Consensus       212 ~ls~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~l~~ls~~~~~~~~~~~~i~~Lv~ll~~~~~~~~~~a~~~L~  291 (529)
T d1jdha_         212 VLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILS  291 (529)
T ss_dssp             HHTTSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred             hhhccccccchhhhhhhhhhHHHHhcccchhhhhhhhhHHHhccccccchhhhhhcchhhhhhcccccHHHHHHHHHHHH
Confidence            99988888887877776665555544                                       445566777788888


Q ss_pred             HhhcCchh-HHHHHhcCChHHHHHhcc--cCCHHHHHHHHHHHHHHhcCcc----chhhhhhcCCHHHHHHHhCCC-Chh
Q 044999          206 LLAVTGRA-RRLLVELGVIPGLVELFH--IGDWTTKLVAGNTLGVVAAHVE----YITPVAEAGAIPLYAELLQGP-DST  277 (461)
Q Consensus       206 ~l~~~~~~-~~~~~~~~~i~~L~~ll~--~~~~~~~~~a~~~L~~l~~~~~----~~~~~~~~g~i~~L~~ll~~~-~~~  277 (461)
                      +++..++. +..+.+.++++.++..+.  ++.+++++.++.+|++++....    .+..+...++++.++.++..+ +..
T Consensus       292 ~l~~~~~~~~~~i~~~~~i~~Li~~l~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~  371 (529)
T d1jdha_         292 NLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWP  371 (529)
T ss_dssp             HHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHH
T ss_pred             hhccchhHHHHHHHHhhhHHHHHHHHHhhhcchhHHHHHHHHhhcccchhhcchhhhhhHHhcccchhHHHHHhccchHH
Confidence            88766655 777888999999999885  5677899999999999997733    355566789999999999876 456


Q ss_pred             HHHHHHHHHHHhccCcccHHHHH-----HHHHHHhccCC----------------------HHHHHHHHHHHHHhhCCCC
Q 044999          278 GKEISEDVFCILAVSEANANAIA-----EHLVRILREGD----------------------NEANAAAADVLWDLAGYKH  330 (461)
Q Consensus       278 ~~~~a~~~L~~l~~~~~~~~~i~-----~~l~~ll~~~~----------------------~~~~~~a~~~L~~l~~~~~  330 (461)
                      ++..++.++.|++.+++++..+.     +.+++++.+.+                      +++...++.++..++..+.
T Consensus       372 ~~~~~~~~l~~l~~~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~la~~~~  451 (529)
T d1jdha_         372 LIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVH  451 (529)
T ss_dssp             HHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHHHHHHHC-----------CBTTBCHHHHHHHHHHHHHHHTTSHH
T ss_pred             HHHHHHHHHhhcchhhhhhhhhhhcccHHHHHHHHhcCCHHHHHHHHhhhhhHHhhcccchHHHHHHHHHHHHHHccCHH
Confidence            88889999999999988877766     77888875432                      3567788889999998888


Q ss_pred             chhHHhhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhccCCCHHHHHHHHHHHHHhc
Q 044999          331 SVPVIRNSGAIPILVNLLRGENDEVREKVSGAIAQLSYNEADRVALADAGAVPIMIELLHDESEELRDNAAESLINFS  408 (461)
Q Consensus       331 ~~~~l~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~  408 (461)
                      ++..+.+.|+++.|++++.++++.++..++.+|++|+.+++.++.+.+.|+++.|+++++++++.++..+..+|.+|+
T Consensus       452 ~r~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~i~~~g~~~~L~~Ll~s~n~~v~~~a~~aL~~ls  529 (529)
T d1jdha_         452 NRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMS  529 (529)
T ss_dssp             HHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHCCCHHHHHHHhCCCCHHHHHHHHHHHHHHhcChhhHHHHHHCCCHHHHHHHhCCCCHHHHHHHHHHHHHhC
Confidence            888899999999999999999999999999999999999999999999999999999999999999999999999875

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.4e-32  Score=262.75  Aligned_cols=392  Identities=15%  Similarity=0.153  Sum_probs=328.9

Q ss_pred             hHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHhcCCC-CCHHHHHHHHHHHHHHhcc
Q 044999           49 TIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQADGALATEIGQSGVINSVLRLFPQ-SDDSFRTVLVKCLRVFVTF  127 (461)
Q Consensus        49 ~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~ll~~-~~~~~~~~~~~~l~~l~~~  127 (461)
                      .|+.+++.+++      ++++.|..|+.+++++.........+.+.+.|+++.|+++|++ +++.++..+++++.+++..
T Consensus        14 ~i~~lv~~l~s------~~~~~~~~a~~~l~~l~s~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~la~~   87 (434)
T d1q1sc_          14 SVEDIVKGINS------NNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASG   87 (434)
T ss_dssp             CHHHHHHHHTS------SCHHHHHHHHHHHHHHHHSSSCCCHHHHHHTTCHHHHHHHTTCGGGHHHHHHHHHHHHHHHTS
T ss_pred             hHHHHHHHHcC------CCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHhcC
Confidence            78899999987      5788999999999998764233345678899999999999975 4678899999999999988


Q ss_pred             ChhhHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHhh-CChHHHHHHHhcCCHHHHHHHHcCCC-----HHHHHHHH
Q 044999          128 GNENRVIVARNGGLEIVIDLLNSCNDGTRRYLLEILSALA-LLREVRRVLICLGGLRYLVEAVSFGS-----MVSRERAC  201 (461)
Q Consensus       128 ~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~-~~~~~~~~~~~~~~l~~l~~~l~~~~-----~~~~~~a~  201 (461)
                      +++.+..+.+.|+++.++.++.++++.+++.|+.+|.+++ .+++.+..+.+.|+++.++.++...+     ......++
T Consensus        88 ~~~~~~~i~~~~~i~~l~~~L~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~  167 (434)
T d1q1sc_          88 TSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLT  167 (434)
T ss_dssp             CHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHH
T ss_pred             ChhhhhHhhhccchhhhhhccccCCHHHHHHHHHHHHHHhccchHHHHHHHHhhhhhHHHHHHHhcccccchHHHHHHHH
Confidence            8889999999999999999999999999999999999999 56777888899999999999998763     24556778


Q ss_pred             HHHHHhhcCchh-HHHHHhcCChHHHHHhcccCCHHHHHHHHHHHHHHhcC-ccchhhhhhcCCHHHHHHHhCCCChhHH
Q 044999          202 QAIGLLAVTGRA-RRLLVELGVIPGLVELFHIGDWTTKLVAGNTLGVVAAH-VEYITPVAEAGAIPLYAELLQGPDSTGK  279 (461)
Q Consensus       202 ~~L~~l~~~~~~-~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~g~i~~L~~ll~~~~~~~~  279 (461)
                      +++.+++..... .......++++.+..++.+++++++..++++|.+++.+ ++....+...|+++.++.++++++++++
T Consensus       168 ~~l~~~~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~Lv~ll~~~~~~~~  247 (434)
T d1q1sc_         168 WTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIV  247 (434)
T ss_dssp             HHHHHHTCCCTTCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHH
T ss_pred             HHHHHHhhcccccchhhhhhhHHHHHHHHHhccccchhhhHHhhhcccchhhhhhHHHHhhcccchhcccccccchhhhh
Confidence            889999887665 44555667899999999999999999999999999988 4555666778999999999999999999


Q ss_pred             HHHHHHHHHhccCccc-HHHHH-----HHHHHHhccCCHHHHHHHHHHHHHhhCC-CCchhHHhhcCCHHHHHHhhcCCC
Q 044999          280 EISEDVFCILAVSEAN-ANAIA-----EHLVRILREGDNEANAAAADVLWDLAGY-KHSVPVIRNSGAIPILVNLLRGEN  352 (461)
Q Consensus       280 ~~a~~~L~~l~~~~~~-~~~i~-----~~l~~ll~~~~~~~~~~a~~~L~~l~~~-~~~~~~l~~~g~i~~L~~ll~~~~  352 (461)
                      ..++.+|.+++...+. ...+.     +.+..++++.+++++..++++|.+++.. ++....+.+.|+++.++.++.+++
T Consensus       248 ~~al~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~li~~l~~~~  327 (434)
T d1q1sc_         248 TPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKAD  327 (434)
T ss_dssp             HHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHSSC
T ss_pred             hchhhhhhhHHhhhhHHHHHHHhccccchHHHhhcccchhhhHHHHHHHhhhccccchhHHHHhhhhhHHHHHHHHhccC
Confidence            9999999999875543 44444     7899999999999999999999999964 556777889999999999999999


Q ss_pred             HHHHHHHHHHHHHhcC--ChhhHHHHHhCCChHHHHHhccCCCHHHHHHHHHHHHHhcCCC----c---chHHHHHhhCC
Q 044999          353 DEVREKVSGAIAQLSY--NEADRVALADAGAVPIMIELLHDESEELRDNAAESLINFSEDP----L---QHERISEAIGI  423 (461)
Q Consensus       353 ~~v~~~a~~~L~~l~~--~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~----~---~~~~l~~~~~~  423 (461)
                      +.++..+++++.+++.  +++....+.+.|+++.|++++.+++++++..++++|.++....    .   .+..+.+.++.
T Consensus       328 ~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~ll~~~d~~~~~~~l~~l~~ll~~~~~~~~~~~~~~~~~~~~~~  407 (434)
T d1q1sc_         328 FKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGL  407 (434)
T ss_dssp             HHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTSH
T ss_pred             hHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHcCCH
Confidence            9999999999999998  5667788999999999999999999999999999999986421    1   23456666776


Q ss_pred             chHHhHHHHHHHhhhchhHHHHHHHHHhHh
Q 044999          424 PSFQSMQSRLTRIRASDDLMARSMRRMSIE  453 (461)
Q Consensus       424 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~  453 (461)
                      +.++.+.       .++++.+++.|..+++
T Consensus       408 ~~i~~L~-------~~~n~~i~~~a~~il~  430 (434)
T d1q1sc_         408 DKIEALQ-------RHENESVYKASLNLIE  430 (434)
T ss_dssp             HHHHHHH-------TCSSHHHHHHHHHHHH
T ss_pred             HHHHHHH-------cCCCHHHHHHHHHHHH
Confidence            6655443       3446667776666554

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=5.6e-31  Score=256.54  Aligned_cols=392  Identities=15%  Similarity=0.119  Sum_probs=331.5

Q ss_pred             hHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHhcCCC-CCHHHHHHHHHHHHHHhcc
Q 044999           49 TIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQADGALATEIGQSGVINSVLRLFPQ-SDDSFRTVLVKCLRVFVTF  127 (461)
Q Consensus        49 ~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~ll~~-~~~~~~~~~~~~l~~l~~~  127 (461)
                      .++.++..+.+      +|+..|..++..+.++.........+.+.+.|+++.|+++++. .++.++..+++++.+++..
T Consensus        77 ~l~~~~~~~~s------~~~~~~~~a~~~~r~~ls~~~~~~i~~ii~~g~i~~Lv~~l~~~~~~~iq~~a~~~L~ni~~~  150 (503)
T d1wa5b_          77 ELPQMTQQLNS------DDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASG  150 (503)
T ss_dssp             CHHHHHHHHSC------SSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHhcC------CCHHHHHHHHHHHHHHHhcCCCchHHHHHHCCChHHHHHHHcCCCCHHHHHHHHHHHHHHHcC
Confidence            78888888876      5677888899999998864345556788899999999999985 5677899999999999988


Q ss_pred             ChhhHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHhh-CChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHH
Q 044999          128 GNENRVIVARNGGLEIVIDLLNSCNDGTRRYLLEILSALA-LLREVRRVLICLGGLRYLVEAVSFGSMVSRERACQAIGL  206 (461)
Q Consensus       128 ~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~-~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~  206 (461)
                      ++.....+...|+++.++.++.+++.+++..|+++|++++ .+++.+..+.+.|+++.++.++.+.+..++..+++++.+
T Consensus       151 ~~~~~~~~~~~g~i~~l~~lL~s~~~~i~~~a~~~L~nia~~~~~~r~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~n  230 (503)
T d1wa5b_         151 TSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSN  230 (503)
T ss_dssp             CHHHHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHhCCChHHHHHHhcCCChhHHHHHHHHHHHHhhhhHHHHHHHHhhcccccchhhcccCCHHHHHHHHHHHHH
Confidence            8888889999999999999999999999999999999999 568889999999999999999999999999999999999


Q ss_pred             hhcCchh-HHHHHhcCChHHHHHhcccCCHHHHHHHHHHHHHHhcC-ccchhhhhhcCCHHHHHHHhCCCChhHHHHHHH
Q 044999          207 LAVTGRA-RRLLVELGVIPGLVELFHIGDWTTKLVAGNTLGVVAAH-VEYITPVAEAGAIPLYAELLQGPDSTGKEISED  284 (461)
Q Consensus       207 l~~~~~~-~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~  284 (461)
                      ++..... .......++++.++.++.+.+++++..++++|.+++.. ++....+.+.|+++.++.++.++++.++..++.
T Consensus       231 l~~~~~~~~~~~~~~~~l~~l~~~l~~~d~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~  310 (503)
T d1wa5b_         231 LCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALR  310 (503)
T ss_dssp             HHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHH
T ss_pred             HhcCCccchHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhccCCchhhhhhhhhhhhhhhhhcccCCchhhhhhHHH
Confidence            9987655 44555678999999999999999999999999999987 556677888999999999999999999999999


Q ss_pred             HHHHhccCcccHHHHH------HHHHHHhccCCHHHHHHHHHHHHHhhCC-CCchhHHhhcCCHHHHHHhhcCCCHHHHH
Q 044999          285 VFCILAVSEANANAIA------EHLVRILREGDNEANAAAADVLWDLAGY-KHSVPVIRNSGAIPILVNLLRGENDEVRE  357 (461)
Q Consensus       285 ~L~~l~~~~~~~~~i~------~~l~~ll~~~~~~~~~~a~~~L~~l~~~-~~~~~~l~~~g~i~~L~~ll~~~~~~v~~  357 (461)
                      ++.+++.+.+......      +.+..++.++++.++..++++|.|++.+ +.....+.+.|+++.++.++.+.++.++.
T Consensus       311 ~l~nl~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~i~~~~~~~l~nl~~~~~~~~~~i~~~~~l~~li~~l~~~~~~v~~  390 (503)
T d1wa5b_         311 AVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKK  390 (503)
T ss_dssp             HHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhhccHHHHHHHHHccccchhHHhcccCChhHHH
Confidence            9999987665544333      8889999999999999999999999864 56677888999999999999999999999


Q ss_pred             HHHHHHHHhcC----ChhhHHHHHhCCChHHHHHhccCCCHHHHHHHHHHHHHhcCCC------------cchHHHHHhh
Q 044999          358 KVSGAIAQLSY----NEADRVALADAGAVPIMIELLHDESEELRDNAAESLINFSEDP------------LQHERISEAI  421 (461)
Q Consensus       358 ~a~~~L~~l~~----~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~------------~~~~~l~~~~  421 (461)
                      .++++|.+++.    .++....+.+.|+++.|++++.+.++++...++.+|.++....            .....+.+.|
T Consensus       391 ~a~~~l~nl~~~~~~~~~~~~~l~~~~~l~~l~~~L~~~d~~~~~~~L~~l~~ll~~~~~~~~~~~~~~~~~~~~iee~g  470 (503)
T d1wa5b_         391 EACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAG  470 (503)
T ss_dssp             HHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTT
T ss_pred             HHHHHHHHHHhcccccHHHHHHHHHCCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHCC
Confidence            99999999986    2345567889999999999999999999999999999886321            1234556666


Q ss_pred             CCchHHhHHHHHHHhhhchhHHHHHHHHHhHh
Q 044999          422 GIPSFQSMQSRLTRIRASDDLMARSMRRMSIE  453 (461)
Q Consensus       422 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~  453 (461)
                      +...++.+.       .+.++.+.+.|..+++
T Consensus       471 ~~~~i~~Lq-------~~~~~~i~~~A~~il~  495 (503)
T d1wa5b_         471 GMEKIFNCQ-------QNENDKIYEKAYKIIE  495 (503)
T ss_dssp             HHHHHHGGG-------GCSCHHHHHHHHHHHH
T ss_pred             CHHHHHHHH-------cCCCHHHHHHHHHHHH
Confidence            555554433       3335566666655554

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.4e-30  Score=253.80  Aligned_cols=398  Identities=17%  Similarity=0.194  Sum_probs=339.3

Q ss_pred             HHHhHHHHHHHhhcCCHHHHHHHHHHHHhhc---CCCchhHHHh--hHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHH
Q 044999            8 WEEAFNRFEQAVVSGSEALQVKALTKLARVS---KFAPQDILAA--TIPILARLLGENNFSGNLTRSIQQAAAYCLKQIA   82 (461)
Q Consensus         8 ~~~~~~~l~~ll~~~~~~~~~~a~~~l~~la---~~~~~~~l~~--~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~   82 (461)
                      ..+.++.+++.+.+++...+..|+..+..+.   +..+.+.+.+  ++|.|+++++.    + .++.+|..|+++|.+++
T Consensus        74 ~~~~l~~~~~~~~s~~~~~~~~a~~~~r~~ls~~~~~~i~~ii~~g~i~~Lv~~l~~----~-~~~~iq~~a~~~L~ni~  148 (503)
T d1wa5b_          74 LQQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRE----N-QPEMLQLEAAWALTNIA  148 (503)
T ss_dssp             --CCHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTST----T-SCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCCchHHHHHHCCChHHHHHHHcC----C-CCHHHHHHHHHHHHHHH
Confidence            3456888999999999999999999998876   3333444444  89999999985    3 45778888999999999


Q ss_pred             hcCCchhHHHHHhcCCHHHHHhcCCCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhcCCChHHHHHHHHH
Q 044999           83 SQADGALATEIGQSGVINSVLRLFPQSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLNSCNDGTRRYLLEI  162 (461)
Q Consensus        83 ~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~  162 (461)
                      .. +......+...|+++.++.+|.+++.+++..+++++.+++..+++.+..+.+.|+++.++.++.+.++.++..++++
T Consensus       149 ~~-~~~~~~~~~~~g~i~~l~~lL~s~~~~i~~~a~~~L~nia~~~~~~r~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~  227 (503)
T d1wa5b_         149 SG-TSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWT  227 (503)
T ss_dssp             TS-CHHHHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHH
T ss_pred             cC-CHHHHHHHHhCCChHHHHHHhcCCChhHHHHHHHHHHHHhhhhHHHHHHHHhhcccccchhhcccCCHHHHHHHHHH
Confidence            85 66677788899999999999999999999999999999999889999999999999999999999999999999999


Q ss_pred             HHHhhCCh-HHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCchh-HHHHHhcCChHHHHHhcccCCHHHHHH
Q 044999          163 LSALALLR-EVRRVLICLGGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRA-RRLLVELGVIPGLVELFHIGDWTTKLV  240 (461)
Q Consensus       163 L~~l~~~~-~~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~-~~~~~~~~~i~~L~~ll~~~~~~~~~~  240 (461)
                      +.+++.+. .........++++.++.++.+.+++++..+++++.+++...+. ...+.+.|+++.++.++.++++.++..
T Consensus       228 l~nl~~~~~~~~~~~~~~~~l~~l~~~l~~~d~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~  307 (503)
T d1wa5b_         228 LSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTP  307 (503)
T ss_dssp             HHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHH
T ss_pred             HHHHhcCCccchHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhccCCchhhhhhhhhhhhhhhhhcccCCchhhhhh
Confidence            99999543 3333445568899999999999999999999999999988777 778899999999999999999999999


Q ss_pred             HHHHHHHHhcC-ccchhhhhhcCCHHHHHHHhCCCChhHHHHHHHHHHHhccCccc-HHHHH-----HHHHHHhccCCHH
Q 044999          241 AGNTLGVVAAH-VEYITPVAEAGAIPLYAELLQGPDSTGKEISEDVFCILAVSEAN-ANAIA-----EHLVRILREGDNE  313 (461)
Q Consensus       241 a~~~L~~l~~~-~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~-~~~i~-----~~l~~ll~~~~~~  313 (461)
                      ++.++++++.+ +.....+...|+++.+..++.++++.++..+++++.|++..+.. ...+.     +.+++++.+++++
T Consensus       308 al~~l~nl~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~i~~~~~~~l~nl~~~~~~~~~~i~~~~~l~~li~~l~~~~~~  387 (503)
T d1wa5b_         308 ALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYK  387 (503)
T ss_dssp             HHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHH
T ss_pred             HHHHHHHHHHHHHHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhhccHHHHHHHHHccccchhHHhcccCChh
Confidence            99999999987 55566777889999999999999999999999999999765543 44444     8999999999999


Q ss_pred             HHHHHHHHHHHhhCC----CCchhHHhhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcC-C-----------hhhHHHHH
Q 044999          314 ANAAAADVLWDLAGY----KHSVPVIRNSGAIPILVNLLRGENDEVREKVSGAIAQLSY-N-----------EADRVALA  377 (461)
Q Consensus       314 ~~~~a~~~L~~l~~~----~~~~~~l~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~-~-----------~~~~~~~~  377 (461)
                      ++..|+++|.+++..    ++....+++.|+++.|+.++...++++...++.+|.++.. .           ......+.
T Consensus       388 v~~~a~~~l~nl~~~~~~~~~~~~~l~~~~~l~~l~~~L~~~d~~~~~~~L~~l~~ll~~~~~~~~~~~~~~~~~~~~ie  467 (503)
T d1wa5b_         388 TKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIE  467 (503)
T ss_dssp             HHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcccccHHHHHHHHHCCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccchHHHHHHH
Confidence            999999999999953    2345667899999999999999999999998888888763 1           12345677


Q ss_pred             hCCChHHHHHhccCCCHHHHHHHHHHHHHhcCCC
Q 044999          378 DAGAVPIMIELLHDESEELRDNAAESLINFSEDP  411 (461)
Q Consensus       378 ~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~  411 (461)
                      +.|++..|-.+..++++++...|...|-..-.++
T Consensus       468 e~g~~~~i~~Lq~~~~~~i~~~A~~il~~~f~~~  501 (503)
T d1wa5b_         468 KAGGMEKIFNCQQNENDKIYEKAYKIIETYFGEE  501 (503)
T ss_dssp             HTTHHHHHHGGGGCSCHHHHHHHHHHHHHHSSSC
T ss_pred             HCCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCc
Confidence            8899999887778899999999999887765443

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=9.1e-28  Score=229.46  Aligned_cols=358  Identities=16%  Similarity=0.155  Sum_probs=281.6

Q ss_pred             hHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHhcCCCCCHHHHHHHHHHHHHHhccC
Q 044999           49 TIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQADGALATEIGQSGVINSVLRLFPQSDDSFRTVLVKCLRVFVTFG  128 (461)
Q Consensus        49 ~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~l~~~~  128 (461)
                      .||.|+++|++      +++++|..|+.+|.++|.+ +++.+..+.+.|+++.|+++|+++++.++..++.++.+++..+
T Consensus         3 ~ip~lv~~L~~------~~~~~~~~a~~~l~~l~~~-~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~   75 (457)
T d1xm9a1           3 TIPKAVQYLSS------QDEKYQAIGAYYIQHTCFQ-DESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRS   75 (457)
T ss_dssp             CHHHHHHHHHS------SCTHHHHHHHHHHHHHTSS-CSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSC
T ss_pred             CHHHHHHHhCC------CCHHHHHHHHHHHHHHHcC-CHHHHHHHHHCCcHHHHHHHHCCCCHHHHHHHHHHHHHHHcCC
Confidence            48999999987      5678999999999999986 7889999999999999999999999999999999999999989


Q ss_pred             hhhHHHHHHcCCHHHHHHHhcC-CChHHHHHHHHHHHHhhCChHHHHHHHhcCCHHHHHHH---------------HcCC
Q 044999          129 NENRVIVARNGGLEIVIDLLNS-CNDGTRRYLLEILSALALLREVRRVLICLGGLRYLVEA---------------VSFG  192 (461)
Q Consensus       129 ~~~~~~~~~~g~i~~L~~ll~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~~---------------l~~~  192 (461)
                      ++++..+.+.|+++.++.++.+ .++.++..|+.++.+++.+...+..+...++.+.+..+               ....
T Consensus        76 ~~~~~~i~~~g~v~~li~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  155 (457)
T d1xm9a1          76 TTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVV  155 (457)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHHHHHHHHHHHTTHHHHTCC---------CC
T ss_pred             HHHHHHHHHCCChHHHHHHHhccCcHHHHHHHHHHHHHHHhhhhhHHHHHhcccHHHHHHHHhhhhhhhcchhhhhcccc
Confidence            9999999999999999998864 56789999999999999777666666655433332222               1334


Q ss_pred             CHHHHHHHHHHHHHhhcCchhHHHHH-hcCChHHHHHhcccCCH------HHHHHHHHHH--------------------
Q 044999          193 SMVSRERACQAIGLLAVTGRARRLLV-ELGVIPGLVELFHIGDW------TTKLVAGNTL--------------------  245 (461)
Q Consensus       193 ~~~~~~~a~~~L~~l~~~~~~~~~~~-~~~~i~~L~~ll~~~~~------~~~~~a~~~L--------------------  245 (461)
                      +..++..++.++.+++...+.+..+. ..|+++.++.++.+...      .........+                    
T Consensus       156 ~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  235 (457)
T d1xm9a1         156 DPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEY  235 (457)
T ss_dssp             CHHHHHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHhcCchHHHHHHHHhccHHHHHHHHhcchhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHh
Confidence            77899999999999999988855544 46778888887752110      0000000000                    


Q ss_pred             ---------------HH----------------HhcCccchhhhhhcCCHHHHHHHhCC-CChhHHHHHHHHHHHhccCc
Q 044999          246 ---------------GV----------------VAAHVEYITPVAEAGAIPLYAELLQG-PDSTGKEISEDVFCILAVSE  293 (461)
Q Consensus       246 ---------------~~----------------l~~~~~~~~~~~~~g~i~~L~~ll~~-~~~~~~~~a~~~L~~l~~~~  293 (461)
                                     ..                .+........+...++++.++.++.. .+++++..+..++.+++...
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~~~~~~l~~l~~~~  315 (457)
T d1xm9a1         236 NARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASK  315 (457)
T ss_dssp             TC----------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCS
T ss_pred             hhhhhhhHHHhhhhhhhhhHHHHHHHHhhhhHHhhhhhHHHHHHHhhcHHHHHHHHHhcccchHHHHHHHHHHHHHhhcc
Confidence                           00                01112333444555678888888754 47888999999999997654


Q ss_pred             ccH-----HHHH------HHHHHHhccCCHHHHHHHHHHHHHhhCCCCchhHHhhcCCHHHHHHhhcCC------CHHHH
Q 044999          294 ANA-----NAIA------EHLVRILREGDNEANAAAADVLWDLAGYKHSVPVIRNSGAIPILVNLLRGE------NDEVR  356 (461)
Q Consensus       294 ~~~-----~~i~------~~l~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~ll~~~------~~~v~  356 (461)
                      ...     ....      +.+++++.++++.++..++.++++++.+++++..+.+ ++++.++.++...      +++++
T Consensus       316 ~~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~l~~La~~~~~~~~i~~-~~i~~li~~L~~~~~~~~~~~~v~  394 (457)
T d1xm9a1         316 GLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVMGN-QVFPEVTRLLTSHTGNTSNSEDIL  394 (457)
T ss_dssp             SSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGGGHHHHHH-HTHHHHHHTTTSCCSCSTTHHHHH
T ss_pred             ccchHHHHHHHHHHcCChHHHHhhhcCccHHHHHHHHHHHHHHhhChhHHHHHHH-hhHHHHHHHHhccccCcCCcHHHH
Confidence            431     1121      8999999999999999999999999999888877765 6899999998642      35789


Q ss_pred             HHHHHHHHHhcC-ChhhHHHHHhCCChHHHHHhccC-CCHHHHHHHHHHHHHhcCCCcch
Q 044999          357 EKVSGAIAQLSY-NEADRVALADAGAVPIMIELLHD-ESEELRDNAAESLINFSEDPLQH  414 (461)
Q Consensus       357 ~~a~~~L~~l~~-~~~~~~~~~~~~~i~~L~~ll~~-~~~~~~~~a~~~L~~l~~~~~~~  414 (461)
                      ..++.+|.+++. ++++++.+.+.|+++.|+.++.+ +++.+++.|+.+|.+|..+++-+
T Consensus       395 ~~a~~~L~~l~~~~~~~~~~l~~~g~i~~L~~l~~~~~~~~~~~aA~~~L~~L~~~~~~~  454 (457)
T d1xm9a1         395 SSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSSKELQ  454 (457)
T ss_dssp             HHHHHHHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSSSTTCS
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHcCHhhH
Confidence            999999999998 88999999999999999999966 57899999999999998887755

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=3.2e-26  Score=218.62  Aligned_cols=357  Identities=15%  Similarity=0.137  Sum_probs=278.3

Q ss_pred             CHHHHHhcCCCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHhh-CChHHHHHH
Q 044999           98 VINSVLRLFPQSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLNSCNDGTRRYLLEILSALA-LLREVRRVL  176 (461)
Q Consensus        98 ~l~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~-~~~~~~~~~  176 (461)
                      .+|.|+++|++++++++..++.++.+++..+++++..+.+.|+++.|++++++++++++..|+.+|.+++ .+++++..+
T Consensus         3 ~ip~lv~~L~~~~~~~~~~a~~~l~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~~i   82 (457)
T d1xm9a1           3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLET   82 (457)
T ss_dssp             CHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHH
T ss_pred             CHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCcHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence            5899999999999999999999999999988899999999999999999999999999999999999999 778899999


Q ss_pred             HhcCCHHHHHHHHcCC-CHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhc---------------ccCCHHHHHH
Q 044999          177 ICLGGLRYLVEAVSFG-SMVSRERACQAIGLLAVTGRARRLLVELGVIPGLVELF---------------HIGDWTTKLV  240 (461)
Q Consensus       177 ~~~~~l~~l~~~l~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll---------------~~~~~~~~~~  240 (461)
                      .+.|+++.++.++.+. +++++..++.++.+++.....+..+...++.+.+..++               ...+..++..
T Consensus        83 ~~~g~v~~li~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  162 (457)
T d1xm9a1          83 RRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFN  162 (457)
T ss_dssp             HHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHHHHHHHHHHHTTHHHHTCC---------CCCHHHHHH
T ss_pred             HHCCChHHHHHHHhccCcHHHHHHHHHHHHHHHhhhhhHHHHHhcccHHHHHHHHhhhhhhhcchhhhhcccccHHHHHH
Confidence            9999999999998654 78999999999999999887755555544333332222               2456789999


Q ss_pred             HHHHHHHHhcCccchhhhhh-cCCHHHHHHHhCCC------ChhHHHHHHHHHHHh---------------cc-------
Q 044999          241 AGNTLGVVAAHVEYITPVAE-AGAIPLYAELLQGP------DSTGKEISEDVFCIL---------------AV-------  291 (461)
Q Consensus       241 a~~~L~~l~~~~~~~~~~~~-~g~i~~L~~ll~~~------~~~~~~~a~~~L~~l---------------~~-------  291 (461)
                      ++.++.+++.+++++..... .|+++.++.++.+.      .......+...+.+.               ..       
T Consensus       163 a~~~l~~~~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (457)
T d1xm9a1         163 ATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYT  242 (457)
T ss_dssp             HHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC-----
T ss_pred             HHHHHHHHhcCchHHHHHHHHhccHHHHHHHHhcchhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhhhhhh
Confidence            99999999998777666655 47789888887532      111111111111111               00       


Q ss_pred             -----------------------------CcccHH-----HHHHHHHHHhc-cCCHHHHHHHHHHHHHhhCCCC------
Q 044999          292 -----------------------------SEANAN-----AIAEHLVRILR-EGDNEANAAAADVLWDLAGYKH------  330 (461)
Q Consensus       292 -----------------------------~~~~~~-----~i~~~l~~ll~-~~~~~~~~~a~~~L~~l~~~~~------  330 (461)
                                                   ......     ...+.++.++. +.++.++..+..++.+++....      
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~  322 (457)
T d1xm9a1         243 EKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGM  322 (457)
T ss_dssp             -----------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHH
T ss_pred             HHHhhhhhhhhhHHHHHHHHhhhhHHhhhhhHHHHHHHhhcHHHHHHHHHhcccchHHHHHHHHHHHHHhhccccchHHH
Confidence                                         000000     00155666664 4578899999999999986533      


Q ss_pred             chhHHhhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhccC------CCHHHHHHHHHHH
Q 044999          331 SVPVIRNSGAIPILVNLLRGENDEVREKVSGAIAQLSYNEADRVALADAGAVPIMIELLHD------ESEELRDNAAESL  404 (461)
Q Consensus       331 ~~~~l~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~------~~~~~~~~a~~~L  404 (461)
                      .+..+.+.|+++.|++++.++++.++..++.++++++.++.++..+.+ ++++.++.++..      .+++++..++.+|
T Consensus       323 ~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~l~~La~~~~~~~~i~~-~~i~~li~~L~~~~~~~~~~~~v~~~a~~~L  401 (457)
T d1xm9a1         323 SQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVMGN-QVFPEVTRLLTSHTGNTSNSEDILSSACYTV  401 (457)
T ss_dssp             HHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGGGHHHHHH-HTHHHHHHTTTSCCSCSTTHHHHHHHHHHHH
T ss_pred             HHHHHHHcCChHHHHhhhcCccHHHHHHHHHHHHHHhhChhHHHHHHH-hhHHHHHHHHhccccCcCCcHHHHHHHHHHH
Confidence            245566889999999999999999999999999999998888888776 579999998843      3467999999999


Q ss_pred             HHhc-CCCcchHHHHHhhCCchHHhHHHHHHHhhhchhHHHHHHHHHhHhhhccCCCC
Q 044999          405 INFS-EDPLQHERISEAIGIPSFQSMQSRLTRIRASDDLMARSMRRMSIEQLTWDPDL  461 (461)
Q Consensus       405 ~~l~-~~~~~~~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~  461 (461)
                      .+++ .++++++.+.+.|+++.+.++..      ..+++.+++.|...+..+.+++++
T Consensus       402 ~~l~~~~~~~~~~l~~~g~i~~L~~l~~------~~~~~~~~~aA~~~L~~L~~~~~~  453 (457)
T d1xm9a1         402 RNLMASQPQLAKQYFSSSMLNNIINLCR------SSASPKAAEAARLLLSDMWSSKEL  453 (457)
T ss_dssp             HHHHTTCTHHHHHHCCHHHHHHHHHHHH------CTTCHHHHHHHHHHHHTTSSSTTC
T ss_pred             HHHhcCCHHHHHHHHHCCCHHHHHHHHh------CCCCHHHHHHHHHHHHHHHcCHhh
Confidence            9997 45677888888777777666554      445788999999999999888875

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=4.1e-18  Score=168.15  Aligned_cols=418  Identities=14%  Similarity=0.082  Sum_probs=304.9

Q ss_pred             HHHhHHHHHHHhhcCCHHHHHHHHHHHHhhc-CCCchhHHHh-hHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHhcC
Q 044999            8 WEEAFNRFEQAVVSGSEALQVKALTKLARVS-KFAPQDILAA-TIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQA   85 (461)
Q Consensus         8 ~~~~~~~l~~ll~~~~~~~~~~a~~~l~~la-~~~~~~~l~~-~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~   85 (461)
                      .++.++.+.+++.+.++.+|..|+..++.++ .-.. ..... .++.+..+++.      +++.++..|+.++..++..-
T Consensus       162 ~~~l~~~~~~l~~D~~~~VR~~a~~~l~~~~~~~~~-~~~~~~l~~~l~~l~~d------~~~~vr~~a~~~l~~i~~~~  234 (588)
T d1b3ua_         162 KAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLEL-DNVKSEIIPMFSNLASD------EQDSVRLLAVEACVNIAQLL  234 (588)
T ss_dssp             HHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCH-HHHHHTHHHHHHHHHTC------SCHHHHTTHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcH-HHHHHHHHHHHHHHhcC------CchhhHHHHHHHHHHhhccC
Confidence            4566788889999999999999999999999 4333 33334 77778887764      44566666999999988631


Q ss_pred             CchhHHHHHhcCCHHHHHhcCCCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHH
Q 044999           86 DGALATEIGQSGVINSVLRLFPQSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLNSCNDGTRRYLLEILSA  165 (461)
Q Consensus        86 ~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~  165 (461)
                      +...    .....++.+.+++.+.++.++..++.++..++..-   .........++.+..++.+.++.+|..|+..+..
T Consensus       235 ~~~~----~~~~i~~~l~~~~~D~~~~Vr~~~~~~l~~l~~~~---~~~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~  307 (588)
T d1b3ua_         235 PQED----LEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAV---GPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKE  307 (588)
T ss_dssp             CHHH----HHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHH---CHHHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHH
T ss_pred             CHHH----HHHHHHHHHHHhcccccHHHHHHHHHhHHHHHHHh---hhhhhhhhhhHHHHHHHhccchHHHHHHHHHHHH
Confidence            2221    22336788889999999999999999998877421   1223344578899999999999999999999998


Q ss_pred             hhC--ChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhcccCCHHHHHHHHH
Q 044999          166 LAL--LREVRRVLICLGGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRARRLLVELGVIPGLVELFHIGDWTTKLVAGN  243 (461)
Q Consensus       166 l~~--~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~  243 (461)
                      ++.  .........-...++.+...+.+.++.+|..++.++..++..-......  ...++.+...+++++++++..+..
T Consensus       308 ~~~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~vr~~~~~~l~~~~~~~~~~~~~--~~l~p~l~~~l~d~~~~v~~~~~~  385 (588)
T d1b3ua_         308 FCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTI--EHLLPLFLAQLKDECPEVRLNIIS  385 (588)
T ss_dssp             HHHTSCTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCHHHHH--HHTHHHHHHHHTCSCHHHHHHHHT
T ss_pred             HHHHHhhhhhhhhhHHHHHHHHHHhhcCCChHHHHHHHHHHhhhhhccchhHHH--HHHHHHHHHHHHhhhhhhhhHHHH
Confidence            872  3333444444567888999999999999999988888776433222221  336889999999999999999888


Q ss_pred             HHHHHhcCccchhhhhhcCCHHHHHHHhCCCChhHHHHHHHHHHHhccC---cccHHHHHHHHHHHhccCCHHHHHHHHH
Q 044999          244 TLGVVAAHVEYITPVAEAGAIPLYAELLQGPDSTGKEISEDVFCILAVS---EANANAIAEHLVRILREGDNEANAAAAD  320 (461)
Q Consensus       244 ~L~~l~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~---~~~~~~i~~~l~~ll~~~~~~~~~~a~~  320 (461)
                      ++..+...-..  .-.....++.+..++.+.++.+|..++..+..++..   +.....+.+.+..++.+....+|..|+.
T Consensus       386 ~l~~~~~~~~~--~~~~~~ll~~l~~~~~d~~~~~r~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~D~~~~VR~~A~~  463 (588)
T d1b3ua_         386 NLDCVNEVIGI--RQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATS  463 (588)
T ss_dssp             TCHHHHHHSCH--HHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHGGGCSSHHHHHHHHH
T ss_pred             HHHHHHhhcch--hhhhhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcChHhHHHHHHHHHHhhccCCchhHHHHHHH
Confidence            88777653111  111234578899999999999999999999888532   2223445588888999999999999999


Q ss_pred             HHHHhhCCCCchhHHhhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhccCCCHHHHHHH
Q 044999          321 VLWDLAGYKHSVPVIRNSGAIPILVNLLRGENDEVREKVSGAIAQLSYNEADRVALADAGAVPIMIELLHDESEELRDNA  400 (461)
Q Consensus       321 ~L~~l~~~~~~~~~l~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a  400 (461)
                      +|..++..-.  ........++.+.+++.+++...|..++.++..+...  ..........+|.+.+++.++.+.+|..+
T Consensus       464 ~L~~l~~~~~--~~~~~~~i~~~l~~~~~~~~~~~R~~~~~~l~~l~~~--~~~~~~~~~ilp~ll~~~~D~v~nVR~~a  539 (588)
T d1b3ua_         464 NLKKLVEKFG--KEWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEV--CGQDITTKHMLPTVLRMAGDPVANVRFNV  539 (588)
T ss_dssp             HHHHHHHHHC--HHHHHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHH--HHHHHHHHHTHHHHHHGGGCSCHHHHHHH
T ss_pred             HHHHHHHHhC--cHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH--cChHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence            9999974311  1122345788999999999999999999999888751  11223344579999999999999999999


Q ss_pred             HHHHHHhcCCCcchHHHHHhhCCchHHhHHHHHHHhhhchhHHHHHHHHHhHhhhc
Q 044999          401 AESLINFSEDPLQHERISEAIGIPSFQSMQSRLTRIRASDDLMARSMRRMSIEQLT  456 (461)
Q Consensus       401 ~~~L~~l~~~~~~~~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~  456 (461)
                      +++|..+...-+.. .+.     ..+..+++.   +..+.|..||++|..+++.+.
T Consensus       540 ~~~l~~i~~~~~~~-~~~-----~~i~~~l~~---L~~D~d~dVr~~A~~al~~l~  586 (588)
T d1b3ua_         540 AKSLQKIGPILDNS-TLQ-----SEVKPILEK---LTQDQDVDVKYFAQEALTVLS  586 (588)
T ss_dssp             HHHHHHHGGGSCHH-HHH-----HHHHHHHHH---HTTCSSHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHcCcH-hHH-----HHHHHHHHH---HcCCCCHHHHHHHHHHHHHHh
Confidence            99999997665433 221     122233332   233458899999999998774

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=3.2e-18  Score=150.62  Aligned_cols=189  Identities=15%  Similarity=0.109  Sum_probs=168.9

Q ss_pred             HHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHH-hcCCCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHH
Q 044999           68 RSIQQAAAYCLKQIASQADGALATEIGQSGVINSVL-RLFPQSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVID  146 (461)
Q Consensus        68 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~-~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~  146 (461)
                      ...+..|+.+|.+++.  +.+++..+...|+++.++ .+++++++.++..++.++.+++..++..+..+.+.|+++.|+.
T Consensus        31 ~~~~~~Al~~L~~L~~--~~d~a~~l~~~gg~~~ll~~ll~s~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~  108 (264)
T d1xqra1          31 QQEREGALELLADLCE--NMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLR  108 (264)
T ss_dssp             HHHHHHHHHHHHHHHT--SHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHc--CHHHHHHHHHcCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHH
Confidence            4455569999999998  788888999999999887 5788999999999999999999989999999999999999999


Q ss_pred             Hhc-CCChHHHHHHHHHHHHhh-CChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCchh-HHHHHhcCCh
Q 044999          147 LLN-SCNDGTRRYLLEILSALA-LLREVRRVLICLGGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRA-RRLLVELGVI  223 (461)
Q Consensus       147 ll~-~~~~~~~~~a~~~L~~l~-~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~-~~~~~~~~~i  223 (461)
                      ++. ..++.++..++.+|.+++ .++..+..+...|+++.++.++.+++..++..++.+|++++...+. +..+.+.|++
T Consensus       109 lL~~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~gi~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~v  188 (264)
T d1xqra1         109 LLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMV  188 (264)
T ss_dssp             HHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHH
T ss_pred             HhhcCCCHHHHHHHHHHHHHHhccchhhHHHHHHhhhhhHHHHHHhcCchHHHHHHHHHHHHHHhccHHHHHHHHHhhhH
Confidence            996 457889999999999999 6777888899999999999999999999999999999999876655 8889999999


Q ss_pred             HHHHHhcccCCHHHHHHHHHHHHHHhcC-ccchhhh
Q 044999          224 PGLVELFHIGDWTTKLVAGNTLGVVAAH-VEYITPV  258 (461)
Q Consensus       224 ~~L~~ll~~~~~~~~~~a~~~L~~l~~~-~~~~~~~  258 (461)
                      +.|+.++.++++++++.++.+|.+|+.. +.....+
T Consensus       189 ~~L~~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~~  224 (264)
T d1xqra1         189 QQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVREC  224 (264)
T ss_dssp             HHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence            9999999999999999999999999986 3333333

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=9.3e-18  Score=147.59  Aligned_cols=186  Identities=16%  Similarity=0.158  Sum_probs=167.4

Q ss_pred             CCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHH-HhcCCChHHHHHHHHHHHHhh-CChHHHHHHHhcCCHHHH
Q 044999          108 QSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVID-LLNSCNDGTRRYLLEILSALA-LLREVRRVLICLGGLRYL  185 (461)
Q Consensus       108 ~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~-ll~~~~~~~~~~a~~~L~~l~-~~~~~~~~~~~~~~l~~l  185 (461)
                      ..+.+.+..++..+.+++ ++.+++..+...|+++.++. +++++++.++..|+.+|.+++ .++..+..+.+.|+++.|
T Consensus        28 ~~~~~~~~~Al~~L~~L~-~~~d~a~~l~~~gg~~~ll~~ll~s~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~~i~~L  106 (264)
T d1xqra1          28 AADQQEREGALELLADLC-ENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKL  106 (264)
T ss_dssp             HHHHHHHHHHHHHHHHHH-TSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHH-cCHHHHHHHHHcCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHH
Confidence            345566888888999999 56688999999999999886 788999999999999999999 567788889999999999


Q ss_pred             HHHHcC-CCHHHHHHHHHHHHHhhcCchh-HHHHHhcCChHHHHHhcccCCHHHHHHHHHHHHHHhcC-ccchhhhhhcC
Q 044999          186 VEAVSF-GSMVSRERACQAIGLLAVTGRA-RRLLVELGVIPGLVELFHIGDWTTKLVAGNTLGVVAAH-VEYITPVAEAG  262 (461)
Q Consensus       186 ~~~l~~-~~~~~~~~a~~~L~~l~~~~~~-~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~g  262 (461)
                      +.++.+ .++.++..+++++.+++.+.+. +..+...|+++.|+.++.+++..++..++.+|++++.. ++.+..+.+.|
T Consensus       107 v~lL~~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~gi~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~  186 (264)
T d1xqra1         107 LRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMG  186 (264)
T ss_dssp             HHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTT
T ss_pred             HHHhhcCCCHHHHHHHHHHHHHHhccchhhHHHHHHhhhhhHHHHHHhcCchHHHHHHHHHHHHHHhccHHHHHHHHHhh
Confidence            999975 5789999999999999988877 88889999999999999999999999999999999876 88899999999


Q ss_pred             CHHHHHHHhCCCChhHHHHHHHHHHHhccCcc
Q 044999          263 AIPLYAELLQGPDSTGKEISEDVFCILAVSEA  294 (461)
Q Consensus       263 ~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~  294 (461)
                      +++.|+.+++++++++++.++.+|.+|+...+
T Consensus       187 ~v~~L~~lL~~~~~~~~~~a~~aL~~L~~~~~  218 (264)
T d1xqra1         187 MVQQLVALVRTEHSPFHEHVLGALCSLVTDFP  218 (264)
T ss_dssp             HHHHHHHHHTSCCSTHHHHHHHHHHHHHTTCH
T ss_pred             hHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCH
Confidence            99999999999999999999999999976543

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=2.8e-16  Score=154.81  Aligned_cols=380  Identities=13%  Similarity=0.145  Sum_probs=279.9

Q ss_pred             HHHhHHHHHHHhhcCCHHHHHHHHHHHHhhc-CCCchhHHHh-hHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHhcC
Q 044999            8 WEEAFNRFEQAVVSGSEALQVKALTKLARVS-KFAPQDILAA-TIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQA   85 (461)
Q Consensus         8 ~~~~~~~l~~ll~~~~~~~~~~a~~~l~~la-~~~~~~~l~~-~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~   85 (461)
                      +...++.+..++++++..+|..|+.++..++ .... ..... .++.+..+++.      .+..++..++.+|..++.. 
T Consensus       201 ~~~l~~~l~~l~~d~~~~vr~~a~~~l~~i~~~~~~-~~~~~~i~~~l~~~~~D------~~~~Vr~~~~~~l~~l~~~-  272 (588)
T d1b3ua_         201 KSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQ-EDLEALVMPTLRQAAED------KSWRVRYMVADKFTELQKA-  272 (588)
T ss_dssp             HHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCH-HHHHHHTHHHHHHHHTC------SSHHHHHHHHHTHHHHHHH-
T ss_pred             HHHHHHHHHHHhcCCchhhHHHHHHHHHHhhccCCH-HHHHHHHHHHHHHhccc------ccHHHHHHHHHhHHHHHHH-
Confidence            5566788888999999999999999999998 3322 22333 78888888864      4566777788999998862 


Q ss_pred             CchhHHHHHhcCCHHHHHhcCCCCCHHHHHHHHHHHHHHhcc-ChhhHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHH
Q 044999           86 DGALATEIGQSGVINSVLRLFPQSDDSFRTVLVKCLRVFVTF-GNENRVIVARNGGLEIVIDLLNSCNDGTRRYLLEILS  164 (461)
Q Consensus        86 ~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~l~~~-~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~  164 (461)
                       ..  ........++.+..++++.+++++..++..+..++.. .........-...++.+...+.+.++.+|..+..++.
T Consensus       273 -~~--~~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~vr~~~~~~l~  349 (588)
T d1b3ua_         273 -VG--PEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIM  349 (588)
T ss_dssp             -HC--HHHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGG
T ss_pred             -hh--hhhhhhhhhHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhcCCChHHHHHHHHHHh
Confidence             11  1233345788999999999999999999999877653 2233344444567888889999999999999888887


Q ss_pred             HhhCChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhcccCCHHHHHHHHHH
Q 044999          165 ALALLREVRRVLICLGGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRARRLLVELGVIPGLVELFHIGDWTTKLVAGNT  244 (461)
Q Consensus       165 ~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~  244 (461)
                      .++..-...  -.....++.+...+.+.+++++..+...+..+...-.....  ....++.+..++.+.++.++..++.+
T Consensus       350 ~~~~~~~~~--~~~~~l~p~l~~~l~d~~~~v~~~~~~~l~~~~~~~~~~~~--~~~ll~~l~~~~~d~~~~~r~~~~~~  425 (588)
T d1b3ua_         350 GLSPILGKD--NTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQL--SQSLLPAIVELAEDAKWRVRLAIIEY  425 (588)
T ss_dssp             GGHHHHCHH--HHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHHHH--HHHHHHHHHHHHTCSSHHHHHHHHHH
T ss_pred             hhhhccchh--HHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhcchhhh--hhHHHHHHHHHHhcccHHHHHHHHHH
Confidence            776211111  11223688899999999999999998888777643322211  12357888888999999999999999


Q ss_pred             HHHHhcCccchhhhhhcCCHHHHHHHhCCCChhHHHHHHHHHHHhccCcc---cHHHHHHHHHHHhccCCHHHHHHHHHH
Q 044999          245 LGVVAAHVEYITPVAEAGAIPLYAELLQGPDSTGKEISEDVFCILAVSEA---NANAIAEHLVRILREGDNEANAAAADV  321 (461)
Q Consensus       245 L~~l~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~---~~~~i~~~l~~ll~~~~~~~~~~a~~~  321 (461)
                      +..++..-.  .........+.+..++.++...+|..|+.+|..+.....   ....+.+.+..++.++++..|..++.+
T Consensus       426 l~~l~~~~~--~~~~~~~l~~~l~~~l~D~~~~VR~~A~~~L~~l~~~~~~~~~~~~i~~~l~~~~~~~~~~~R~~~~~~  503 (588)
T d1b3ua_         426 MPLLAGQLG--VEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDPNYLHRMTTLFC  503 (588)
T ss_dssp             HHHHHHHHC--GGGCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHHHHHHHTHHHHHHTTTCSCHHHHHHHHHH
T ss_pred             HHHHHHHcC--hHhHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence            998876411  111222346778888999999999999999999964322   223344888899999999999999999


Q ss_pred             HHHhhCCCCchhHHhhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhccCCCHHHHHHHH
Q 044999          322 LWDLAGYKHSVPVIRNSGAIPILVNLLRGENDEVREKVSGAIAQLSYNEADRVALADAGAVPIMIELLHDESEELRDNAA  401 (461)
Q Consensus       322 L~~l~~~~~~~~~l~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~  401 (461)
                      +..+...-  .........+|.+.+++.++.+.||..++++|..+...-+.  ........|.+.+++++++.+||..|.
T Consensus       504 l~~l~~~~--~~~~~~~~ilp~ll~~~~D~v~nVR~~a~~~l~~i~~~~~~--~~~~~~i~~~l~~L~~D~d~dVr~~A~  579 (588)
T d1b3ua_         504 INVLSEVC--GQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDN--STLQSEVKPILEKLTQDQDVDVKYFAQ  579 (588)
T ss_dssp             HHHHHHHH--HHHHHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSCH--HHHHHHHHHHHHHHTTCSSHHHHHHHH
T ss_pred             HHHHHHHc--ChHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCc--HhHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence            99887421  12233456899999999999999999999999999872221  122233467788888899999999999


Q ss_pred             HHHHHhc
Q 044999          402 ESLINFS  408 (461)
Q Consensus       402 ~~L~~l~  408 (461)
                      .++..|+
T Consensus       580 ~al~~l~  586 (588)
T d1b3ua_         580 EALTVLS  586 (588)
T ss_dssp             HHHHHTT
T ss_pred             HHHHHHh
Confidence            9998875

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=2.2e-11  Score=125.28  Aligned_cols=389  Identities=11%  Similarity=0.038  Sum_probs=240.7

Q ss_pred             HHHhHHHHHHHhhcCCHHHHHHHHHHHHhhc-CCC--chhHHHhhHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHhc
Q 044999            8 WEEAFNRFEQAVVSGSEALQVKALTKLARVS-KFA--PQDILAATIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQ   84 (461)
Q Consensus         8 ~~~~~~~l~~ll~~~~~~~~~~a~~~l~~la-~~~--~~~~l~~~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~   84 (461)
                      .+..++.+...+.+++...|..|+.+|+.++ ...  ....+.+.++.++..++.      +++.++..++++|.+++..
T Consensus       393 l~~~l~~l~~~l~s~~~~~reaa~~alg~i~eg~~~~~~~~l~~li~~l~~~l~d------~~~~Vr~~a~~~l~~~~~~  466 (888)
T d1qbkb_         393 LPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSD------KKALVRSITCWTLSRYAHW  466 (888)
T ss_dssp             HHHHHHHHHHTTTSSSHHHHHHHHHHHHHHTTTSHHHHTTTHHHHHHHHHHHTTS------SCHHHHHHHHHHHHHTHHH
T ss_pred             HHHHHHHHHHhhccchhHHHHHHHHHhhhhhhhHHHHhcccchhhhHHHHHhccC------CCHHHHHHHHHHHHHHHHH
Confidence            5566677778888999999999999999998 211  111233388888888875      4677888899999998863


Q ss_pred             CCchhHHHHHhcCCHHHHHhcCCCCCHHHHHHHHHHHHHHhccCh-hhHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHH
Q 044999           85 ADGALATEIGQSGVINSVLRLFPQSDDSFRTVLVKCLRVFVTFGN-ENRVIVARNGGLEIVIDLLNSCNDGTRRYLLEIL  163 (461)
Q Consensus        85 ~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~-~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L  163 (461)
                      ........ .-...++.+++.+.++++.++..++.++..++.... .....+  ...++.+...+...+...+..+..++
T Consensus       467 ~~~~~~~~-~~~~~l~~ll~~l~d~~~~V~~~a~~al~~l~~~~~~~l~p~~--~~il~~l~~~l~~~~~~~~~~~~~al  543 (888)
T d1qbkb_         467 VVSQPPDT-YLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYL--AYILDTLVFAFSKYQHKNLLILYDAI  543 (888)
T ss_dssp             HHSSCHHH-HTTTHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHTTSSGGGH--HHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred             hhhhhhhh-hhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhhhhhHH--HHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence            11112222 234568888888899999999999999998775221 111111  12456677777777776666666666


Q ss_pred             HHhhC---ChHHHHHHHhcCCHHHHHHHHcCC--CHHHHHHHHHHHHHhhcCchh--HHH---HHhcCChHHHHHh----
Q 044999          164 SALAL---LREVRRVLICLGGLRYLVEAVSFG--SMVSRERACQAIGLLAVTGRA--RRL---LVELGVIPGLVEL----  229 (461)
Q Consensus       164 ~~l~~---~~~~~~~~~~~~~l~~l~~~l~~~--~~~~~~~a~~~L~~l~~~~~~--~~~---~~~~~~i~~L~~l----  229 (461)
                      ..++.   ..-....+.+ ..++.+.......  +.......+.++..+......  ...   +.+ ..+..+...    
T Consensus       544 ~~l~~~~~~~~~~~~~~~-~l~~~l~~~~~~~~~~~~~~~~~le~l~~i~~~~~~~~~~~~~~~~~-~~~~~l~~~l~~~  621 (888)
T d1qbkb_         544 GTLADSVGHHLNKPEYIQ-MLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFLPYCEPVYQ-RCVNLVQKTLAQA  621 (888)
T ss_dssp             HHHHHHHGGGGCSHHHHH-HHHHHHHHHHTTSCTTCTTHHHHHHHHHHHHHHSTTTTHHHHHHHHH-HHHHHHHHHHHHH
T ss_pred             HHHHHhhhccccchHHHH-HHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhHHHHhhhHHHHHH-HHHHHHHHHHHHH
Confidence            65541   1111111111 1344454444321  112233445555554332211  111   111 011111111    


Q ss_pred             ----c-----ccCCHHHHHHHHHHHHHHhcC--ccchhhhhhcCCHHHHHHHhCCCChhHHHHHHHHHHHhccC--c---
Q 044999          230 ----F-----HIGDWTTKLVAGNTLGVVAAH--VEYITPVAEAGAIPLYAELLQGPDSTGKEISEDVFCILAVS--E---  293 (461)
Q Consensus       230 ----l-----~~~~~~~~~~a~~~L~~l~~~--~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~--~---  293 (461)
                          .     ...+.+....++.++..+...  ......+.....++.+...+++.+++++..+..++..++..  +   
T Consensus       622 ~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~llgdl~~~~~~~~~  701 (888)
T d1qbkb_         622 MLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVK  701 (888)
T ss_dssp             HHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHTTTTHHHHHTSCHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTG
T ss_pred             HHHhcccccccchhHHHHHHHHHHHHHHHHHhhhhhhhhhhHhhHHHHHHHHhCCCChHHHHHHHHHHHHHHHhhhHHHH
Confidence                1     123456677777777777654  33334444456788899999999999999999999888532  2   


Q ss_pred             ccHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhCC-CCchhHHhhcCCHHHHHHhhcCC--CHHHHHHHHHHHHHhcC-C
Q 044999          294 ANANAIAEHLVRILREGDNEANAAAADVLWDLAGY-KHSVPVIRNSGAIPILVNLLRGE--NDEVREKVSGAIAQLSY-N  369 (461)
Q Consensus       294 ~~~~~i~~~l~~ll~~~~~~~~~~a~~~L~~l~~~-~~~~~~l~~~g~i~~L~~ll~~~--~~~v~~~a~~~L~~l~~-~  369 (461)
                      .....+.+.+...+.+..++++..|+++++.++.. .+.-... -..+++.|++.++++  +..+++.++.+|+.++. +
T Consensus       702 ~~l~~~~~~l~~~L~~~~~~v~~~a~~~ig~ia~~~~~~~~py-~~~il~~L~~il~~~~~~~~v~~n~~~~lgrl~~~~  780 (888)
T d1qbkb_         702 PCIADFMPILGTNLNPEFISVCNNATWAIGEISIQMGIEMQPY-IPMVLHQLVEIINRPNTPKTLLENTAITIGRLGYVC  780 (888)
T ss_dssp             GGHHHHHHHHHHTCCGGGHHHHHHHHHHHHHHHHHTGGGGGGG-SHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHC
Confidence            22344448888888888899999999999999843 2221111 124788899999864  35688999999999998 6


Q ss_pred             hhhHHHHHhCCChHHHHHhccC-CCHHHHHHHHHHHHHhcC
Q 044999          370 EADRVALADAGAVPIMIELLHD-ESEELRDNAAESLINFSE  409 (461)
Q Consensus       370 ~~~~~~~~~~~~i~~L~~ll~~-~~~~~~~~a~~~L~~l~~  409 (461)
                      ++.-..... ..++.+...+.. .+.+-+..+...++.+..
T Consensus       781 p~~~~~~l~-~~~~~~~~~l~~~~d~~ek~~~~~g~~~~i~  820 (888)
T d1qbkb_         781 PQEVAPMLQ-QFIRPWCTSLRNIRDNEEKDSAFRGICTMIS  820 (888)
T ss_dssp             HHHHGGGGG-GTHHHHHHHHTTSCCSHHHHHHHHHHHHHHH
T ss_pred             HHHHHhhHH-HHHHHHHHHhccCCCcHHHHHHHHHHHHHHH
Confidence            653222222 356767766643 555667788888887754

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=2.1e-10  Score=117.81  Aligned_cols=371  Identities=16%  Similarity=0.119  Sum_probs=222.7

Q ss_pred             HHHHHHHHHHHhhcCCCchhHHHhhHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHh
Q 044999           25 ALQVKALTKLARVSKFAPQDILAATIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQADGALATEIGQSGVINSVLR  104 (461)
Q Consensus        25 ~~~~~a~~~l~~la~~~~~~~l~~~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~  104 (461)
                      .+|..|+.+|..++.......+...++.+.+.+.+      ++...+..|+.++..++++ ....... .-...++.+++
T Consensus       372 ~~r~~a~~~L~~l~~~~~~~il~~~l~~l~~~l~s------~~~~~reaa~~alg~i~eg-~~~~~~~-~l~~li~~l~~  443 (888)
T d1qbkb_         372 NLRKCSAAALDVLANVYRDELLPHILPLLKELLFH------HEWVVKESGILVLGAIAEG-CMQGMIP-YLPELIPHLIQ  443 (888)
T ss_dssp             SSHHHHHHHSTTTTTTCCSSSHHHHHHHHHHTTTS------SSHHHHHHHHHHHHHHTTT-SHHHHTT-THHHHHHHHHH
T ss_pred             hHHHHHHHHHhhHhhhhHHHHHHHHHHHHHHhhcc------chhHHHHHHHHHhhhhhhh-HHHHhcc-cchhhhHHHHH
Confidence            36777888888888222222333366777777765      3455555688999998874 2221111 11235788889


Q ss_pred             cCCCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHhhCCh--HHHHHHHhcCCH
Q 044999          105 LFPQSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLNSCNDGTRRYLLEILSALALLR--EVRRVLICLGGL  182 (461)
Q Consensus       105 ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~--~~~~~~~~~~~l  182 (461)
                      .+++.++.++..+++++..++.........-.-...++.++..+.+.++.++..|+.+|.+++...  .....+  ...+
T Consensus       444 ~l~d~~~~Vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~ll~~l~d~~~~V~~~a~~al~~l~~~~~~~l~p~~--~~il  521 (888)
T d1qbkb_         444 CLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYL--AYIL  521 (888)
T ss_dssp             HTTSSCHHHHHHHHHHHHHTHHHHHSSCHHHHTTTHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHTTSSGGGH--HHHH
T ss_pred             hccCCCHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhhhhhHH--HHHH
Confidence            999999999999999998776421111111123457888888888999999999999999987321  111111  2356


Q ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHhhcCchh---HHHHHhcCChHHHHHhcc--cCCHHHHHHHHHHHHHHhcC--ccch
Q 044999          183 RYLVEAVSFGSMVSRERACQAIGLLAVTGRA---RRLLVELGVIPGLVELFH--IGDWTTKLVAGNTLGVVAAH--VEYI  255 (461)
Q Consensus       183 ~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~---~~~~~~~~~i~~L~~ll~--~~~~~~~~~a~~~L~~l~~~--~~~~  255 (461)
                      +.++..+.......+..+..++..++.....   ...+.+ ..++.+.....  ..+.........++..+...  ....
T Consensus       522 ~~l~~~l~~~~~~~~~~~~~al~~l~~~~~~~~~~~~~~~-~l~~~l~~~~~~~~~~~~~~~~~le~l~~i~~~~~~~~~  600 (888)
T d1qbkb_         522 DTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQ-MLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFL  600 (888)
T ss_dssp             HHHHHHTTTCCHHHHHHHHHHHHHHHHHHGGGGCSHHHHH-HHHHHHHHHHTTSCTTCTTHHHHHHHHHHHHHHSTTTTH
T ss_pred             HHHHHHHhhhhHHHHHHHHHHHHHHHHhhhccccchHHHH-HHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhHHHHh
Confidence            7778888877777777777777776543221   111111 13344444433  11222233445555555433  1111


Q ss_pred             hhhhh--cCCHHHHHH--------Hh-----CCCChhHHHHHHHHHHHhcc--CcccHHHHH-----HHHHHHhccCCHH
Q 044999          256 TPVAE--AGAIPLYAE--------LL-----QGPDSTGKEISEDVFCILAV--SEANANAIA-----EHLVRILREGDNE  313 (461)
Q Consensus       256 ~~~~~--~g~i~~L~~--------ll-----~~~~~~~~~~a~~~L~~l~~--~~~~~~~i~-----~~l~~ll~~~~~~  313 (461)
                      .....  ..++..+..        ..     ...+.+....+..++..+..  .......+.     +.+...+.+.+++
T Consensus       601 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~  680 (888)
T d1qbkb_         601 PYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPE  680 (888)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHTTTTHHHHHTSCHHHHHHHHHTCSSHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHHHHhhhhhhhhhhHhhHHHHHHHHhCCCChH
Confidence            11100  000111111        11     11245566666666666642  222233222     7777888899999


Q ss_pred             HHHHHHHHHHHhhCC-CCc-hhHHhhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcC-C-hhhHHHHHhCCChHHHHHhc
Q 044999          314 ANAAAADVLWDLAGY-KHS-VPVIRNSGAIPILVNLLRGENDEVREKVSGAIAQLSY-N-EADRVALADAGAVPIMIELL  389 (461)
Q Consensus       314 ~~~~a~~~L~~l~~~-~~~-~~~l~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~-~-~~~~~~~~~~~~i~~L~~ll  389 (461)
                      ++..|..+++.++.. +.. ...+  ..+++.+...+.+....++..++++++.++. . ++.+..+-  .+++.|+..+
T Consensus       681 vr~~a~~llgdl~~~~~~~~~~~l--~~~~~~l~~~L~~~~~~v~~~a~~~ig~ia~~~~~~~~py~~--~il~~L~~il  756 (888)
T d1qbkb_         681 VRQSSFALLGDLTKACFQHVKPCI--ADFMPILGTNLNPEFISVCNNATWAIGEISIQMGIEMQPYIP--MVLHQLVEII  756 (888)
T ss_dssp             HHHHHHHHHHHHHHHCGGGTGGGH--HHHHHHHHHTCCGGGHHHHHHHHHHHHHHHHHTGGGGGGGSH--HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHH--HHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHhhhhHH--HHHHHHHHHH
Confidence            999999999999853 222 2222  2367788888888888999999999999987 2 22222111  3577888888


Q ss_pred             cC--CCHHHHHHHHHHHHHhcCC
Q 044999          390 HD--ESEELRDNAAESLINFSED  410 (461)
Q Consensus       390 ~~--~~~~~~~~a~~~L~~l~~~  410 (461)
                      ++  .+..++++++.+|..|+..
T Consensus       757 ~~~~~~~~v~~n~~~~lgrl~~~  779 (888)
T d1qbkb_         757 NRPNTPKTLLENTAITIGRLGYV  779 (888)
T ss_dssp             TCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             cCCCccHHHHHHHHHHHHHHHHH
Confidence            65  3567999999999988643

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

Probab=99.24  E-value=3.4e-09  Score=92.43  Aligned_cols=254  Identities=15%  Similarity=0.158  Sum_probs=189.8

Q ss_pred             CCHHHHHhcCCCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHhhCChHHHHHH
Q 044999           97 GVINSVLRLFPQSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLNSCNDGTRRYLLEILSALALLREVRRVL  176 (461)
Q Consensus        97 ~~l~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~  176 (461)
                      ...+.|+++|+++++.++..++..|..+...           ..++.++++++++++.+|..|+.+|..+..........
T Consensus        19 ~~~~~L~~~L~d~~~~vR~~A~~~L~~~~~~-----------~~~~~l~~~l~d~~~~vr~~a~~aL~~l~~~~~~~~~~   87 (276)
T d1oyza_          19 LNDDELFRLLDDHNSLKRISSARVLQLRGGQ-----------DAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCEDNV   87 (276)
T ss_dssp             SCHHHHHHHTTCSSHHHHHHHHHHHHHHCCH-----------HHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTHHHH
T ss_pred             CCHHHHHHHhcCCCHHHHHHHHHHHHhhCCH-----------hHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccccch
Confidence            4567899999999999999999998866421           24788999999999999999999999987443332222


Q ss_pred             HhcCCHHH-HHHHHcCCCHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhcccCCHHHHHHHHHHHHHHhcCccch
Q 044999          177 ICLGGLRY-LVEAVSFGSMVSRERACQAIGLLAVTGRARRLLVELGVIPGLVELFHIGDWTTKLVAGNTLGVVAAHVEYI  255 (461)
Q Consensus       177 ~~~~~l~~-l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~  255 (461)
                           ++. +..+++++++.++..++.+|+++........    ...++.+...+.+.++.++..++.++....      
T Consensus        88 -----~~~l~~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~----~~~~~~l~~~~~d~~~~vr~~a~~~l~~~~------  152 (276)
T d1oyza_          88 -----FNILNNMALNDKSACVRATAIESTAQRCKKNPIYS----PKIVEQSQITAFDKSTNVRRATAFAISVIN------  152 (276)
T ss_dssp             -----HHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGGH----HHHHHHHHHHTTCSCHHHHHHHHHHHHTC-------
T ss_pred             -----HHHHHHHHhcCCChhHHHHHHHHHHHHccccchhh----HHHHHHHHHHhcCcchHHHHHHHHHHhhcc------
Confidence                 222 3334677899999999999999876554321    124677888888889999988877776542      


Q ss_pred             hhhhhcCCHHHHHHHhCCCChhHHHHHHHHHHHhccCcccHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCchhHH
Q 044999          256 TPVAEAGAIPLYAELLQGPDSTGKEISEDVFCILAVSEANANAIAEHLVRILREGDNEANAAAADVLWDLAGYKHSVPVI  335 (461)
Q Consensus       256 ~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~l~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~l  335 (461)
                          ....++.+..++...++.++..+..++.......   ....+.+...+...++.++..+..++..+.         
T Consensus       153 ----~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~al~~~~---------  216 (276)
T d1oyza_         153 ----DKATIPLLINLLKDPNGDVRNWAAFAININKYDN---SDIRDCFVEMLQDKNEEVRIEAIIGLSYRK---------  216 (276)
T ss_dssp             ------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCC---HHHHHHHHHHTTCSCHHHHHHHHHHHHHTT---------
T ss_pred             ----hHHHHHHHHHhcccccchhhhhHHHHHHhhhccc---cccchhhhhhhhhhhhhhhhhhccccchhh---------
Confidence                2345788889998888998888888877764433   223366777788889999999999888763         


Q ss_pred             hhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhccC-CCHHHHHHHHHHHH
Q 044999          336 RNSGAIPILVNLLRGENDEVREKVSGAIAQLSYNEADRVALADAGAVPIMIELLHD-ESEELRDNAAESLI  405 (461)
Q Consensus       336 ~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~~~~~a~~~L~  405 (461)
                       ....++.|+..+.+  +.++..++.+|+.+..          .+.++.|..++.+ ++.+++..|..+|.
T Consensus       217 -~~~~~~~L~~~l~d--~~vr~~a~~aL~~ig~----------~~~~~~L~~~l~~~~d~~vr~~A~~~L~  274 (276)
T d1oyza_         217 -DKRVLSVLCDELKK--NTVYDDIIEAAGELGD----------KTLLPVLDTMLYKFDDNEIITSAIDKLK  274 (276)
T ss_dssp             -CGGGHHHHHHHHTS--SSCCHHHHHHHHHHCC----------GGGHHHHHHHHTTSSCCHHHHHHHHHHT
T ss_pred             -hhhhHHHHHHHhCC--hHHHHHHHHHHHHcCC----------HHHHHHHHHHHccCCCHHHHHHHHHHHc
Confidence             23467888888875  4588899999988762          2368999988855 57889999888763

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=1.8e-09  Score=101.43  Aligned_cols=379  Identities=15%  Similarity=0.097  Sum_probs=232.8

Q ss_pred             HHHHhhcCCHHHHHHHHHHHHhhcCCCchhHHHhhHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHhcCCchhHHHHH
Q 044999           15 FEQAVVSGSEALQVKALTKLARVSKFAPQDILAATIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQADGALATEIG   94 (461)
Q Consensus        15 l~~ll~~~~~~~~~~a~~~l~~la~~~~~~~l~~~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~   94 (461)
                      +++-+-++|..+|..|-..|..+.    .....+.+..+...+.+    ++.+...+..|+..|.+..............
T Consensus         5 il~~~~s~d~~~r~~A~~~L~~~~----~~~~~~~~~~l~~il~~----~~~~~~~R~~A~i~lk~~l~~~~~~~~~~~~   76 (458)
T d1ibrb_           5 ILEKTVSPDRLELEAAQKFLERAA----VENLPTFLVELSRVLAN----PGNSQVARVAAGLQIKNSLTSKDPDIKAQYQ   76 (458)
T ss_dssp             HHHHTTCSCHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHC----TTSCHHHHHHHHHHHHHHHCCSSHHHHHHHH
T ss_pred             HHHHHhCcCHHHHHHHHHHHHHHH----hcCchHHHHHHHHHHhc----CCCCHHHHHHHHHHHHHHhhccCchhhhHHh
Confidence            344455789999999999998777    11112256677777765    4444556666778888777531111111111


Q ss_pred             ----------hcCCHHHHHhcCCCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhcCC--ChHHHHHHHHH
Q 044999           95 ----------QSGVINSVLRLFPQSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLNSC--NDGTRRYLLEI  162 (461)
Q Consensus        95 ----------~~~~l~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~--~~~~~~~a~~~  162 (461)
                                .....+.+++.+.+.++. +..++.++..++......   -.-.+.++.++..+.+.  +...+..++.+
T Consensus        77 ~~~~~l~~~~~~~i~~~ll~~~~~~~~~-~~~~~~~~~~i~~~~~~~---~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~  152 (458)
T d1ibrb_          77 QRWLAIDANARREVKNYVLQTLGTETYR-PSSASQCVAGIACAEIPV---NQWPELIPQLVANVTNPNSTEHMKESTLEA  152 (458)
T ss_dssp             HHHHTSCHHHHHHHHHHHHHHTTCCCSS-SCSHHHHHHHHHHHHGGG---TCCTTHHHHHHHHHHCTTCCHHHHHHHHHH
T ss_pred             hhhccCCHHHHHHHHHHHHhccCCCcHH-HHHHHHHHHHHHHHhCCc---ccCcchhHHHHHHHHhhcchHHHHHHHHHH
Confidence                      112344566666665543 334444444333211000   00124677788877653  45677788888


Q ss_pred             HHHhhC-ChHHHHHHHhcCCHHHHHHHHcCC--CHHHHHHHHHHHHHhhcCchh--HHHHHhcCChHHHHHhcccCCHHH
Q 044999          163 LSALAL-LREVRRVLICLGGLRYLVEAVSFG--SMVSRERACQAIGLLAVTGRA--RRLLVELGVIPGLVELFHIGDWTT  237 (461)
Q Consensus       163 L~~l~~-~~~~~~~~~~~~~l~~l~~~l~~~--~~~~~~~a~~~L~~l~~~~~~--~~~~~~~~~i~~L~~ll~~~~~~~  237 (461)
                      +..++. .......-.....++.++..+.+.  +.+++..++.++.++......  ..........+.+...+.++++++
T Consensus       153 l~~~~~~~~~~~~~~~~~~il~~~~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  232 (458)
T d1ibrb_         153 IGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRV  232 (458)
T ss_dssp             HHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHH
T ss_pred             HHHHHhhccchhhhhhHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhHhhHHHHhcCCCHHH
Confidence            887762 111111111122467777777654  678999999999998765543  112222335677778888999999


Q ss_pred             HHHHHHHHHHHhcC-ccchhhhhhcCCHHHHHHHhCCCChhHHHHHHHHHHHhccCccc---------------------
Q 044999          238 KLVAGNTLGVVAAH-VEYITPVAEAGAIPLYAELLQGPDSTGKEISEDVFCILAVSEAN---------------------  295 (461)
Q Consensus       238 ~~~a~~~L~~l~~~-~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~---------------------  295 (461)
                      +..++.+|..+... +..-.........+.+.....+.+++++..++..+..++.....                     
T Consensus       233 ~~~~~~~l~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (458)
T d1ibrb_         233 RVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKF  312 (458)
T ss_dssp             HHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCC
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHhhhHHHHHHHH
Confidence            99999999998765 22222222233345556667788889998888888776422110                     


Q ss_pred             -HH----HHHHHHHHHhcc-------CCHHHHHHHHHHHHHhhCCCCchhHHhhcCCHHHHHHhhcCCCHHHHHHHHHHH
Q 044999          296 -AN----AIAEHLVRILRE-------GDNEANAAAADVLWDLAGYKHSVPVIRNSGAIPILVNLLRGENDEVREKVSGAI  363 (461)
Q Consensus       296 -~~----~i~~~l~~ll~~-------~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~ll~~~~~~v~~~a~~~L  363 (461)
                       ..    .+.+.+.+.+..       .+..++..+..++..++.....  .+. ...++.+.+.++++++.+|..++.+|
T Consensus       313 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~--~~~-~~l~~~i~~~l~s~~~~~r~aal~~l  389 (458)
T d1ibrb_         313 YAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED--DIV-PHVLPFIKEHIKNPDWRYRDAAVMAF  389 (458)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTT--THH-HHHHHHHHHHTTCSSHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhHHhhhhcchhhhccccccHHHHHHHHHHHHHHhccH--hhh-hHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence             11    111445555432       1235788888888888843211  111 23566777888899999999999999


Q ss_pred             HHhcCC--hhhHHHHHhCCChHHHHHhccCCCHHHHHHHHHHHHHhcC
Q 044999          364 AQLSYN--EADRVALADAGAVPIMIELLHDESEELRDNAAESLINFSE  409 (461)
Q Consensus       364 ~~l~~~--~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~  409 (461)
                      +.++..  +..-..+ -...++.++..++++++.+|..|+++|..++.
T Consensus       390 ~~i~~~~~~~~~~~~-l~~i~~~l~~~l~d~~~~VR~~a~~~l~~i~~  436 (458)
T d1ibrb_         390 GCILEGPEPSQLKPL-VIQAMPTLIELMKDPSVVVRDTAAWTVGRICE  436 (458)
T ss_dssp             HHTSSSSCTTTTCTT-TTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhcCHhHHHHH-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence            999862  2211111 23468999999999999999999999998864

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=1.3e-09  Score=115.65  Aligned_cols=381  Identities=13%  Similarity=0.104  Sum_probs=242.1

Q ss_pred             HHHHHHHhhcCCHHHHHHHHHHHHhhc-CC---CchhHHHhhHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHhcCCc
Q 044999           12 FNRFEQAVVSGSEALQVKALTKLARVS-KF---APQDILAATIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQADG   87 (461)
Q Consensus        12 ~~~l~~ll~~~~~~~~~~a~~~l~~la-~~---~~~~~l~~~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~   87 (461)
                      +..+.+-+.+.|+..|..|+..|.... .+   .......++++.++++|..      .++++|..|+.+|..+.....+
T Consensus         5 ~~~ll~k~~~~D~d~R~ma~~dl~~~l~~~~~~~~~~~~~~i~~~ll~~L~D------~~~~Vq~~A~k~l~~l~~~~~~   78 (1207)
T d1u6gc_           5 ISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLED------KNGEVQNLAVKCLGPLVSKVKE   78 (1207)
T ss_dssp             HHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTC------SSHHHHHHHHHHHHHHHTTSCH
T ss_pred             HHHHHHhcCCCCHhHHHHHHHHHHHHHhhcccccChHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHHHHhCcH
Confidence            455666789999999999998777654 21   1223344489999999975      5678999999999999875222


Q ss_pred             hhHHHHHhcCCHHHHHhcCCCCCHHHHHHHHHHHHHHhccChhh-----HHHHHHcCCHHHHHHHhc-CCChHHHHHHHH
Q 044999           88 ALATEIGQSGVINSVLRLFPQSDDSFRTVLVKCLRVFVTFGNEN-----RVIVARNGGLEIVIDLLN-SCNDGTRRYLLE  161 (461)
Q Consensus        88 ~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~-----~~~~~~~g~i~~L~~ll~-~~~~~~~~~a~~  161 (461)
                      ...     ...++.|...+.+++...+..++.++..+...-+..     -........++.+..... ..+..++..++.
T Consensus        79 ~~~-----~~l~~~L~~~l~~~~~~~r~~~~~~L~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~al~  153 (1207)
T d1u6gc_          79 YQV-----ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALD  153 (1207)
T ss_dssp             HHH-----HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHH
T ss_pred             hhH-----HHHHHHHHHHhcCCchhhhHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhhcCCCCHHHHHHHHH
Confidence            222     234677888777778777888887777554321110     011111123444455443 446688999999


Q ss_pred             HHHHhhC-ChH-HHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhcc-cCCHHHH
Q 044999          162 ILSALAL-LRE-VRRVLICLGGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRARRLLVELGVIPGLVELFH-IGDWTTK  238 (461)
Q Consensus       162 ~L~~l~~-~~~-~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~-~~~~~~~  238 (461)
                      ++..+.. ... ....  ....++.++..+.+++..+|..|+.+++.++.......   -...++.++..+. +.+...+
T Consensus       154 ~l~~l~~~~g~~l~~~--~~~il~~l~~~l~~~~~~vR~~A~~~l~~l~~~~~~~~---~~~~~~~ll~~l~~~~~~~~~  228 (1207)
T d1u6gc_         154 IMADMLSRQGGLLVNF--HPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIV---FVDLIEHLLSELSKNDSMSTT  228 (1207)
T ss_dssp             HHHHHHHHTCSSCTTT--HHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC-------CTTHHHHHHHHHHHTCSSCSC
T ss_pred             HHHHHHHHhhHhhHHH--HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHCCHHH---HHHHHHHHHHHHccCCCHHHH
Confidence            8888762 111 1000  11256777888889999999999999999986554311   0224566666554 4455566


Q ss_pred             HHHHHHHHHHhcCccchhhhhhcCCHHHHHHHhCCCChhHHHHHHHHHHHhccCcc--cHH---HHHHHHHH--------
Q 044999          239 LVAGNTLGVVAAHVEYITPVAEAGAIPLYAELLQGPDSTGKEISEDVFCILAVSEA--NAN---AIAEHLVR--------  305 (461)
Q Consensus       239 ~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~--~~~---~i~~~l~~--------  305 (461)
                      ..++.++..++.....+-.-.-..+++.+...+.+.++++++.+..++..+.....  ...   .+.+.+..        
T Consensus       229 ~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~ii~~~l~~l~~dp~~  308 (1207)
T d1u6gc_         229 RTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNY  308 (1207)
T ss_dssp             TTHHHHHHHHHHHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHTTCCCCC---
T ss_pred             HHHHHHHHHHHHHcchhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhChhhhhhhHHHHHHHHHHHHhcCcch
Confidence            66777888877652222111123568999999999999999999999888843221  111   11111111        


Q ss_pred             -----------------------------HhccCCHHHHHHHHHHHHHhhCC-CCchhHHhhcCCHHHHHHhhcCCCHHH
Q 044999          306 -----------------------------ILREGDNEANAAAADVLWDLAGY-KHSVPVIRNSGAIPILVNLLRGENDEV  355 (461)
Q Consensus       306 -----------------------------ll~~~~~~~~~~a~~~L~~l~~~-~~~~~~l~~~g~i~~L~~ll~~~~~~v  355 (461)
                                                   ...+.++.+|..++.+|..+... ++..... -..+++.++..+.+.++.+
T Consensus       309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~s~~vR~~a~~~L~~l~~~~~~~l~~~-~~~~~~~L~~~l~d~~~~v  387 (1207)
T d1u6gc_         309 NYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEF-YKTVSPALISRFKEREENV  387 (1207)
T ss_dssp             ---------------------------------CTTHHHHHHHHHHHHHHTTCCTTHHHH-HTTTHHHHHSTTSCSSSHH
T ss_pred             hhhhHHHHHhhhhhhccchhhhhHHHHHhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHH-HHHHHHHHHHHhcCCchHH
Confidence                                         11233467899999999999854 4443333 3468899999999989999


Q ss_pred             HHHHHHHHHHhcC-Chhh----------------HHHHH--hCCChHHHHHhccCCCHHHHHHHHHHHHHhcC
Q 044999          356 REKVSGAIAQLSY-NEAD----------------RVALA--DAGAVPIMIELLHDESEELRDNAAESLINFSE  409 (461)
Q Consensus       356 ~~~a~~~L~~l~~-~~~~----------------~~~~~--~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~  409 (461)
                      +..+..++..+.. ....                ...+.  -..+++.+.+.+.+.++.++..+..++..+..
T Consensus       388 r~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~l~~~~~~~r~~~~~~l~~l~~  460 (1207)
T d1u6gc_         388 KADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVN  460 (1207)
T ss_dssp             HHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccchhhhhhchHHHHhhcchHHHHHHHhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHH
Confidence            9999888887764 1110                11111  11345666777788899999999888888753

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.18  E-value=1.1e-09  Score=116.23  Aligned_cols=387  Identities=11%  Similarity=0.066  Sum_probs=237.1

Q ss_pred             cHHHhHHHHHHHhhcCCHHHHHHHHHHHHhhcCCCchhHHHhhHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHhcC-
Q 044999            7 NWEEAFNRFEQAVVSGSEALQVKALTKLARVSKFAPQDILAATIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQA-   85 (461)
Q Consensus         7 ~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~la~~~~~~~l~~~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~-   85 (461)
                      ...+.++.+++++++.++.|+..|+++|+.+...-....+...++.|+..+..    ++.  ..+..+..+|..+...- 
T Consensus        42 ~~~~i~~~ll~~L~D~~~~Vq~~A~k~l~~l~~~~~~~~~~~l~~~L~~~l~~----~~~--~~r~~~~~~L~~i~~~l~  115 (1207)
T d1u6gc_          42 SERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEYQVETIVDTLCTNMLS----DKE--QLRDISSIGLKTVIGELP  115 (1207)
T ss_dssp             HHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHTTC----SSS--HHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCcHhhHHHHHHHHHHHhcC----Cch--hhhHHHHHHHHHHHHhcc
Confidence            36678899999999999999999999999988332333444466666666553    222  12222333333332100 


Q ss_pred             --------------------------C--chhHH--------HHH---------hcCCHHHHHhcCCCCCHHHHHHHHHH
Q 044999           86 --------------------------D--GALAT--------EIG---------QSGVINSVLRLFPQSDDSFRTVLVKC  120 (461)
Q Consensus        86 --------------------------~--~~~~~--------~~~---------~~~~l~~L~~ll~~~~~~~~~~~~~~  120 (461)
                                                .  ...+.        .+.         ....++.++..+.+.++.++..++.+
T Consensus       116 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~al~~l~~l~~~~g~~l~~~~~~il~~l~~~l~~~~~~vR~~A~~~  195 (1207)
T d1u6gc_         116 PASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIA  195 (1207)
T ss_dssp             -----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHH
T ss_pred             cccccchhHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence                                      0  00000        000         11245667778889999999999999


Q ss_pred             HHHHhccChhhHHHHHHcCCHHHHHHHhc-CCChHHHHHHHHHHHHhhCChHHHHHHHhcCCHHHHHHHHcCCCHHHHHH
Q 044999          121 LRVFVTFGNENRVIVARNGGLEIVIDLLN-SCNDGTRRYLLEILSALALLREVRRVLICLGGLRYLVEAVSFGSMVSRER  199 (461)
Q Consensus       121 l~~l~~~~~~~~~~~~~~g~i~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~  199 (461)
                      +..++......    .-...++.+++.+. +.+...+..++.++..++.....+-.-.-...++.++..+.+.++++|..
T Consensus       196 l~~l~~~~~~~----~~~~~~~~ll~~l~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~r~~  271 (1207)
T d1u6gc_         196 LGHLVMSCGNI----VFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREY  271 (1207)
T ss_dssp             HHHHTTTC--------CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHH
T ss_pred             HHHHHHHCCHH----HHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHcchhhHHHHHHHHHHHHHHhcCccHHHHHH
Confidence            99887643221    11234566666553 44556667777777777622111100011357888999999999999999


Q ss_pred             HHHHHHHhhcCchh--HHHHHhcCChHHHHH-------------------------------------hcccCCHHHHHH
Q 044999          200 ACQAIGLLAVTGRA--RRLLVELGVIPGLVE-------------------------------------LFHIGDWTTKLV  240 (461)
Q Consensus       200 a~~~L~~l~~~~~~--~~~~~~~~~i~~L~~-------------------------------------ll~~~~~~~~~~  240 (461)
                      ++.++..+....+.  ...+.+  .++.+..                                     ...+..+.++..
T Consensus       272 al~~l~~l~~~~~~~~~~~~~~--ii~~~l~~l~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~s~~vR~~  349 (1207)
T d1u6gc_         272 CIQAFESFVRRCPKEVYPHVST--IINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRA  349 (1207)
T ss_dssp             HHHHHHHHHHCTTCCCHHHHHH--HHHHHTTCCCCC------------------------------------CTTHHHHH
T ss_pred             HHHHHHHHHHhChhhhhhhHHH--HHHHHHHHHhcCcchhhhhHHHHHhhhhhhccchhhhhHHHHHhhhhhhhHHHHHH
Confidence            99999888765433  111111  1111111                                     112345678889


Q ss_pred             HHHHHHHHhcC-ccchhhhhhcCCHHHHHHHhCCCChhHHHHHHHHHHHhccCcc-----------------cHHH----
Q 044999          241 AGNTLGVVAAH-VEYITPVAEAGAIPLYAELLQGPDSTGKEISEDVFCILAVSEA-----------------NANA----  298 (461)
Q Consensus       241 a~~~L~~l~~~-~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~-----------------~~~~----  298 (461)
                      ++.+|..+... ++.-... -..+++.++..+.+.++.++..+..++..+.....                 ....    
T Consensus       350 a~~~L~~l~~~~~~~l~~~-~~~~~~~L~~~l~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  428 (1207)
T d1u6gc_         350 AAKCLDAVVSTRHEMLPEF-YKTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQ  428 (1207)
T ss_dssp             HHHHHHHHHTTCCTTHHHH-HTTTHHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC------------CCCHHHHHHHH
T ss_pred             HHHHHHhHHHHHHHHHHHH-HHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhccchhhhhhchHHHHhhcchHHHHHHH
Confidence            99999998876 3332222 24578999999998899999999888877632110                 0111    


Q ss_pred             ---HHHHHHHHhccCCHHHHHHHHHHHHHhhCC-C-CchhHHhhcCCHHHHHHhhcCC--CHHHHHHHHHHHHHhcC-Ch
Q 044999          299 ---IAEHLVRILREGDNEANAAAADVLWDLAGY-K-HSVPVIRNSGAIPILVNLLRGE--NDEVREKVSGAIAQLSY-NE  370 (461)
Q Consensus       299 ---i~~~l~~ll~~~~~~~~~~a~~~L~~l~~~-~-~~~~~l~~~g~i~~L~~ll~~~--~~~v~~~a~~~L~~l~~-~~  370 (461)
                         +.+.+.+.+++.++.++..+..++..+... + .....+.  ..++.+...+.+.  ...++..++.++..+.. ..
T Consensus       429 ~~~i~~~l~~~l~~~~~~~r~~~~~~l~~l~~~~~~~l~~~l~--~~~~~i~~~l~~~~~~~~~~~~al~~l~~l~~~~~  506 (1207)
T d1u6gc_         429 VPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHIP--VLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHS  506 (1207)
T ss_dssp             TTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTTTGGGHH--HHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSC
T ss_pred             hHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHcchHHHHhhH--hhHHHHHHHHhcccchhHHHHHHHHHHHHHHHhcc
Confidence               115666777888999999999999998743 2 2222221  2455666666643  45678888888888876 22


Q ss_pred             hhHHHHHhCCChHHHHHhccCCCHHHHHHHHHHHHHhc
Q 044999          371 ADRVALADAGAVPIMIELLHDESEELRDNAAESLINFS  408 (461)
Q Consensus       371 ~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~  408 (461)
                      .....-.-....+.+...+.+..+.++..+..++..+.
T Consensus       507 ~~~~~~~~~~l~~~~~~~~~~~~~~i~~~al~~~~~l~  544 (1207)
T d1u6gc_         507 PQVFHPHVQALVPPVVACVGDPFYKITSEALLVTQQLV  544 (1207)
T ss_dssp             GGGGHHHHTTTHHHHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhhhHHHHHccccHHHHHHHHHHHHHHH
Confidence            22222223456788888888888999888887776664

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.17  E-value=4.2e-09  Score=98.78  Aligned_cols=347  Identities=11%  Similarity=0.040  Sum_probs=213.5

Q ss_pred             HHhHHHHHHHhhcC--CHHHHHHHHHHHHhhc--CCCch------------hHHHh-hHHHHHHhhccCCCCCCCcHHHH
Q 044999            9 EEAFNRFEQAVVSG--SEALQVKALTKLARVS--KFAPQ------------DILAA-TIPILARLLGENNFSGNLTRSIQ   71 (461)
Q Consensus         9 ~~~~~~l~~ll~~~--~~~~~~~a~~~l~~la--~~~~~------------~~l~~-~i~~l~~~l~~~~~~~~~~~~~~   71 (461)
                      .+.+..+...+.++  +..+|..|+..|.+..  .....            ..... +.+.+++.+..    .+.   ..
T Consensus        33 ~~~~~~l~~il~~~~~~~~~R~~A~i~lk~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~ll~~~~~----~~~---~~  105 (458)
T d1ibrb_          33 PTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLQTLGT----ETY---RP  105 (458)
T ss_dssp             HHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTC----CCS---SS
T ss_pred             hHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhccCchhhhHHhhhhccCCHHHHHHHHHHHHhccCC----CcH---HH
Confidence            45566677777654  4678888888887766  22111            11122 55667777765    332   33


Q ss_pred             HHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHhcCCC--CCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhc
Q 044999           72 QAAAYCLKQIASQADGALATEIGQSGVINSVLRLFPQ--SDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLN  149 (461)
Q Consensus        72 ~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~ll~~--~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll~  149 (461)
                      +.++.++..++..  ....  -.-.+.++.+++.+.+  .++..+..+..++..+..........-.....++.++..+.
T Consensus       106 ~~~~~~~~~i~~~--~~~~--~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~il~~~~~~l~  181 (458)
T d1ibrb_         106 SSASQCVAGIACA--EIPV--NQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMR  181 (458)
T ss_dssp             CSHHHHHHHHHHH--HGGG--TCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHH--hCCc--ccCcchhHHHHHHHHhhcchHHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHhc
Confidence            3355666666552  1000  0012457778877754  34555666777776655422221111111224566777776


Q ss_pred             CC--ChHHHHHHHHHHHHhhCChHHH--HHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCchh--HHHHHhcCCh
Q 044999          150 SC--NDGTRRYLLEILSALALLREVR--RVLICLGGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRA--RRLLVELGVI  223 (461)
Q Consensus       150 ~~--~~~~~~~a~~~L~~l~~~~~~~--~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~--~~~~~~~~~i  223 (461)
                      +.  +..++..++.++..+.......  .........+.+...+.+++++++..++.++..++.....  ...+ .....
T Consensus       182 ~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~l-~~~~~  260 (458)
T d1ibrb_         182 KEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYM-GPALF  260 (458)
T ss_dssp             TTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTT-TTTHH
T ss_pred             ccccCHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhHhhHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHH
Confidence            54  4579999999999888433221  1222233567778888888999999999999998765443  2211 12223


Q ss_pred             HHHHHhcccCCHHHHHHHHHHHHHHhcCcc-----------------chhh----hhhcCCHHHHHHHhCC-------CC
Q 044999          224 PGLVELFHIGDWTTKLVAGNTLGVVAAHVE-----------------YITP----VAEAGAIPLYAELLQG-------PD  275 (461)
Q Consensus       224 ~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~-----------------~~~~----~~~~g~i~~L~~ll~~-------~~  275 (461)
                      +.+.....+.+++++..++..+..++....                 ....    ..-...++.+...+..       .+
T Consensus       261 ~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~  340 (458)
T d1ibrb_         261 AITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDD  340 (458)
T ss_dssp             HHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTC
T ss_pred             HHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHhhhHHHHHHHHHHHHHHHHHhhhHHhhhhcchhhhcccc
Confidence            344555668888899888888887764210                 0000    0011223444554432       23


Q ss_pred             hhHHHHHHHHHHHhcc--CcccHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhCCC--CchhHHhhcCCHHHHHHhhcCC
Q 044999          276 STGKEISEDVFCILAV--SEANANAIAEHLVRILREGDNEANAAAADVLWDLAGYK--HSVPVIRNSGAIPILVNLLRGE  351 (461)
Q Consensus       276 ~~~~~~a~~~L~~l~~--~~~~~~~i~~~l~~ll~~~~~~~~~~a~~~L~~l~~~~--~~~~~l~~~g~i~~L~~ll~~~  351 (461)
                      ..++..+..++..++.  .+.....+.+.+.+.++++++.+|..|+.+|+.++...  +.... .-...++.++..++++
T Consensus       341 ~~~~~~a~~~l~~l~~~~~~~~~~~l~~~i~~~l~s~~~~~r~aal~~l~~i~~~~~~~~~~~-~l~~i~~~l~~~l~d~  419 (458)
T d1ibrb_         341 WNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKP-LVIQAMPTLIELMKDP  419 (458)
T ss_dssp             CSHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCT-TTTTHHHHHHHGGGCS
T ss_pred             ccHHHHHHHHHHHHHHhccHhhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCHhHHHH-HHHHHHHHHHHHhCCC
Confidence            4578888888888853  23333444488888999999999999999999998542  22111 2345789999999999


Q ss_pred             CHHHHHHHHHHHHHhcC
Q 044999          352 NDEVREKVSGAIAQLSY  368 (461)
Q Consensus       352 ~~~v~~~a~~~L~~l~~  368 (461)
                      ++.||..|+++|+.++.
T Consensus       420 ~~~VR~~a~~~l~~i~~  436 (458)
T d1ibrb_         420 SVVVRDTAAWTVGRICE  436 (458)
T ss_dssp             CHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHH
Confidence            99999999999999986

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

Probab=99.11  E-value=1.2e-08  Score=88.93  Aligned_cols=228  Identities=11%  Similarity=0.072  Sum_probs=169.3

Q ss_pred             HcCCHHHHHHHhcCCChHHHHHHHHHHHHhhCChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCchhHHH
Q 044999          137 RNGGLEIVIDLLNSCNDGTRRYLLEILSALALLREVRRVLICLGGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRARRL  216 (461)
Q Consensus       137 ~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~  216 (461)
                      +....+.|+++|+++++.+|..|+.+|..+..          ...++.++.+++++++.+|..|+.+|+.+.........
T Consensus        17 ~~~~~~~L~~~L~d~~~~vR~~A~~~L~~~~~----------~~~~~~l~~~l~d~~~~vr~~a~~aL~~l~~~~~~~~~   86 (276)
T d1oyza_          17 KKLNDDELFRLLDDHNSLKRISSARVLQLRGG----------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCEDN   86 (276)
T ss_dssp             HTSCHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTHHH
T ss_pred             ccCCHHHHHHHhcCCCHHHHHHHHHHHHhhCC----------HhHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccccc
Confidence            34457789999999999999999999987742          23478899999999999999999999998765544332


Q ss_pred             HHhcCChHHHH-HhcccCCHHHHHHHHHHHHHHhcCccchhhhhhcCCHHHHHHHhCCCChhHHHHHHHHHHHhccCccc
Q 044999          217 LVELGVIPGLV-ELFHIGDWTTKLVAGNTLGVVAAHVEYITPVAEAGAIPLYAELLQGPDSTGKEISEDVFCILAVSEAN  295 (461)
Q Consensus       217 ~~~~~~i~~L~-~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~  295 (461)
                      +     .+.+. .++.++++.++..++.+|.+++......    ....++.+...+.+.++.++..++.++.......  
T Consensus        87 ~-----~~~l~~~~l~d~~~~vr~~a~~aL~~~~~~~~~~----~~~~~~~l~~~~~d~~~~vr~~a~~~l~~~~~~~--  155 (276)
T d1oyza_          87 V-----FNILNNMALNDKSACVRATAIESTAQRCKKNPIY----SPKIVEQSQITAFDKSTNVRRATAFAISVINDKA--  155 (276)
T ss_dssp             H-----HHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGG----HHHHHHHHHHHTTCSCHHHHHHHHHHHHTC---C--
T ss_pred             h-----HHHHHHHHhcCCChhHHHHHHHHHHHHccccchh----hHHHHHHHHHHhcCcchHHHHHHHHHHhhcchHH--
Confidence            2     22333 3566889999999999999987653221    1234778888888889999998888877653211  


Q ss_pred             HHHHHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCchhHHhhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCChhhHHH
Q 044999          296 ANAIAEHLVRILREGDNEANAAAADVLWDLAGYKHSVPVIRNSGAIPILVNLLRGENDEVREKVSGAIAQLSYNEADRVA  375 (461)
Q Consensus       296 ~~~i~~~l~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~  375 (461)
                         ..+.+..++...++.++..+..++.......        ....+.+...+.+.+..++..+..++..+..       
T Consensus       156 ---~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~-------  217 (276)
T d1oyza_         156 ---TIPLLINLLKDPNGDVRNWAAFAININKYDN--------SDIRDCFVEMLQDKNEEVRIEAIIGLSYRKD-------  217 (276)
T ss_dssp             ---CHHHHHHHHTCSSHHHHHHHHHHHHHHTCCC--------HHHHHHHHHHTTCSCHHHHHHHHHHHHHTTC-------
T ss_pred             ---HHHHHHHhcccccchhhhhHHHHHHhhhccc--------cccchhhhhhhhhhhhhhhhhhccccchhhh-------
Confidence               1266777788888888888888887775432        2244557778888899999999998887643       


Q ss_pred             HHhCCChHHHHHhccCCCHHHHHHHHHHHHHhc
Q 044999          376 LADAGAVPIMIELLHDESEELRDNAAESLINFS  408 (461)
Q Consensus       376 ~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~  408 (461)
                         ...++.|+..+.+  +.++..++.+|..+.
T Consensus       218 ---~~~~~~L~~~l~d--~~vr~~a~~aL~~ig  245 (276)
T d1oyza_         218 ---KRVLSVLCDELKK--NTVYDDIIEAAGELG  245 (276)
T ss_dssp             ---GGGHHHHHHHHTS--SSCCHHHHHHHHHHC
T ss_pred             ---hhhHHHHHHHhCC--hHHHHHHHHHHHHcC
Confidence               2357888888864  458899999998885

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.10  E-value=7.3e-08  Score=97.66  Aligned_cols=387  Identities=14%  Similarity=0.145  Sum_probs=237.6

Q ss_pred             HHHhHHHHHHHhhcCCHHHHHHHHHHHHhhc-CCCchhHHHhhHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHhcCC
Q 044999            8 WEEAFNRFEQAVVSGSEALQVKALTKLARVS-KFAPQDILAATIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQAD   86 (461)
Q Consensus         8 ~~~~~~~l~~ll~~~~~~~~~~a~~~l~~la-~~~~~~~l~~~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~   86 (461)
                      .++..+.|...+.|+|+.+|..|-..|..+. +.     ....+..+.+.+..    .+.++..+..|+..|.+......
T Consensus         3 ~~~~~~~L~~~~~s~d~~~r~~Ae~~L~~~~~~~-----~~~~~~~l~~il~~----~~~~~~~r~~A~i~lkn~i~~~~   73 (861)
T d2bpta1           3 TAEFAQLLENSILSPDQNIRLTSETQLKKLSNDN-----FLQFAGLSSQVLID----ENTKLEGRILAALTLKNELVSKD   73 (861)
T ss_dssp             HHHHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHC-----HHHHHHHHHHHHTC----TTSCHHHHHHHHHHHHTTTCCSS
T ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcC-----chHHHHHHHHHHHc----CCCCHHHHHHHHHHHHHHhhccc
Confidence            4566666777788999999999999998776 21     12256677888876    55555566668788877765311


Q ss_pred             chhHHHH-------H----hcCCHHHHHhcCCCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhcCCC-hH
Q 044999           87 GALATEI-------G----QSGVINSVLRLFPQSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLNSCN-DG  154 (461)
Q Consensus        87 ~~~~~~~-------~----~~~~l~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~-~~  154 (461)
                      .......       .    ....-..+++.+.++++.++..++.++..++.........   ...++.|++.+.+.+ ..
T Consensus        74 ~~~~~~~~~~~~~~i~~~~~~~ik~~ll~~l~~~~~~vr~~~a~~i~~i~~~~~p~~~w---peli~~L~~~~~s~~~~~  150 (861)
T d2bpta1          74 SVKTQQFAQRWITQVSPEAKNQIKTNALTALVSIEPRIANAAAQLIAAIADIELPHGAW---PELMKIMVDNTGAEQPEN  150 (861)
T ss_dssp             HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGTCC---HHHHHHHHHHTSTTSCHH
T ss_pred             chhhhhHHhhhHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhCCcCch---HHHHHHHHHHhcCCCcHH
Confidence            1111000       0    0112345667778889999999999888776422110000   013566777776654 46


Q ss_pred             HHHHHHHHHHHhhCChHH-HHHHHh--cCCHHHHHHHHc--CCCHHHHHHHHHHHHHhhcCchh--HHHHHhcCChHHHH
Q 044999          155 TRRYLLEILSALALLREV-RRVLIC--LGGLRYLVEAVS--FGSMVSRERACQAIGLLAVTGRA--RRLLVELGVIPGLV  227 (461)
Q Consensus       155 ~~~~a~~~L~~l~~~~~~-~~~~~~--~~~l~~l~~~l~--~~~~~~~~~a~~~L~~l~~~~~~--~~~~~~~~~i~~L~  227 (461)
                      .+..|+.++..++..... ...+..  ...+..++..+.  ..+..++..++.++.++...-..  .........++.+.
T Consensus       151 ~~~~al~~l~~i~e~~~~~~~~~~~~~~~il~~i~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~  230 (861)
T d2bpta1         151 VKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVC  230 (861)
T ss_dssp             HHHHHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHhHhHHhhhhhhHHHHhHH
Confidence            788899999988732211 111111  123444444443  33679999999999988765443  11111233567778


Q ss_pred             HhcccCCHHHHHHHHHHHHHHhcC-ccchhhhhhcCCHHHHHHHhCCCChhHHHHHHHHHHHhccCccc-----------
Q 044999          228 ELFHIGDWTTKLVAGNTLGVVAAH-VEYITPVAEAGAIPLYAELLQGPDSTGKEISEDVFCILAVSEAN-----------  295 (461)
Q Consensus       228 ~ll~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~-----------  295 (461)
                      ..+.+++++++..++.++..++.. ++.-......-+...+....++.+++++..+...+..++.....           
T Consensus       231 ~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~  310 (861)
T d2bpta1         231 EATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQS  310 (861)
T ss_dssp             HHHTCSCHHHHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred             HHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence            888899999999999999998865 32222222222223344555677889999888887766432211           


Q ss_pred             --------H---HHHHHHHHHHhccC-------CHHHHHHHHHHHHHhhCCCCchhHHhhcCCHHHHHHhhcCCCHHHHH
Q 044999          296 --------A---NAIAEHLVRILREG-------DNEANAAAADVLWDLAGYKHSVPVIRNSGAIPILVNLLRGENDEVRE  357 (461)
Q Consensus       296 --------~---~~i~~~l~~ll~~~-------~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~ll~~~~~~v~~  357 (461)
                              .   ..+.+.+...+...       +...+..+..++..++.....  .+. .-..+.+...+.+.+...+.
T Consensus       311 ~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~  387 (861)
T d2bpta1         311 PLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGN--HIL-EPVLEFVEQNITADNWRNRE  387 (861)
T ss_dssp             SCCCCCHHHHHHHHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGG--GGH-HHHHHHHHHHTTCSSHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHhhcch--hhh-hhhcchhhhhhhhHHHHHHH
Confidence                    0   11115555555432       235667777777777643111  011 11234455566778888999


Q ss_pred             HHHHHHHHhcCC--hhhHHHHHhCCChHHHHHhccCCCHHHHHHHHHHHHHhcCC
Q 044999          358 KVSGAIAQLSYN--EADRVALADAGAVPIMIELLHDESEELRDNAAESLINFSED  410 (461)
Q Consensus       358 ~a~~~L~~l~~~--~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~  410 (461)
                      .+..++..++..  +........ ..++.++..+.++++.++..+++++..++..
T Consensus       388 ~a~~~l~~i~~~~~~~~~~~~l~-~~l~~l~~~l~d~~~~vr~~a~~~l~~l~~~  441 (861)
T d2bpta1         388 AAVMAFGSIMDGPDKVQRTYYVH-QALPSILNLMNDQSLQVKETTAWCIGRIADS  441 (861)
T ss_dssp             HHHHHHHHTSSSSCHHHHHHHHH-HHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhcchhhHHHHHH-HHHHHHHHHhcCcchhhhhHHHHHHHHHHHH
Confidence            999999999872  222222222 3688899999999999999999999988643

>d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Regulatory subunit H of the V-type ATPase
domain: Regulatory subunit H of the V-type ATPase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.04  E-value=1.1e-07  Score=85.87  Aligned_cols=313  Identities=13%  Similarity=0.083  Sum_probs=207.6

Q ss_pred             hHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHhcCCch---hHHHHHhcC--CHHHHHhcCCCCCHHHHHHHHHHHHH
Q 044999           49 TIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQADGA---LATEIGQSG--VINSVLRLFPQSDDSFRTVLVKCLRV  123 (461)
Q Consensus        49 ~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~---~~~~~~~~~--~l~~L~~ll~~~~~~~~~~~~~~l~~  123 (461)
                      ++..++++|..    . ..++..+.....+..|... ++.   ....+.+..  .-+.+..++..++.-+...+...+..
T Consensus        75 ~~~~~l~lL~~----~-sk~d~vqyvL~Li~dLL~~-d~~~~~~~~~~~~~~~~~~~~f~~~l~~~d~~~~~~s~~i~~l  148 (477)
T d1ho8a_          75 TLIPLIHLLST----S-DNEDCKKSVQNLIAELLSS-DKYGDDTVKFFQEDPKQLEQLFDVSLKGDFQTVLISGFNVVSL  148 (477)
T ss_dssp             THHHHHHHHHS----C-CCHHHHHHHHHHHHHHHHC-SSSSHHHHHHHHHCTTHHHHHHHHCSCSSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhh----c-CcHHHHHHHHHHHHHHHhc-CcchhHHHHHHhhCccchhHHHHHhccCchhHHHHHHHHHHHH
Confidence            67788888875    3 3455666666677777764 221   112222222  13455666766666656666656666


Q ss_pred             HhccChhhHHHHH-HcCCHHHHHHHhcCCChHHHHHHHHHHHHhhCChHHHHHHHh--cCCHHHHHHHHcCC--------
Q 044999          124 FVTFGNENRVIVA-RNGGLEIVIDLLNSCNDGTRRYLLEILSALALLREVRRVLIC--LGGLRYLVEAVSFG--------  192 (461)
Q Consensus       124 l~~~~~~~~~~~~-~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~--~~~l~~l~~~l~~~--------  192 (461)
                      ++..........- .......+-.+....+...+..++.++..+...++.|..+..  ...++.+++.+...        
T Consensus       149 l~~~~~~~~~~~e~l~~~~~~l~~l~~~~~~~~~~i~v~~lq~llr~~~~R~~fw~~~~~~~~~l~~il~~a~~~~~~~~  228 (477)
T d1ho8a_         149 LVQNGLHNVKLVEKLLKNNNLINILQNIEQMDTCYVCIRLLQELAVIPEYRDVIWLHEKKFMPTLFKILQRATDSQLATR  228 (477)
T ss_dssp             HTSTTTCCHHHHHHHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHTSHHHHHHHHTTHHHHHHHHHHHHHHHHC------
T ss_pred             HHhccccccchHHHHHHhhHHHHHhhcccccchHHHHHHHHHHHhcCccHHHHHHHcccchHHHHHHHHHHHhcccccch
Confidence            6654433222111 111233344455677888888999999999999999998864  34677777766431        


Q ss_pred             ---------CHHHHHHHHHHHHHhhcCchhHHHHHhc--CChHHHHHhcc-cCCHHHHHHHHHHHHHHhcCcc--c----
Q 044999          193 ---------SMVSRERACQAIGLLAVTGRARRLLVEL--GVIPGLVELFH-IGDWTTKLVAGNTLGVVAAHVE--Y----  254 (461)
Q Consensus       193 ---------~~~~~~~a~~~L~~l~~~~~~~~~~~~~--~~i~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~~--~----  254 (461)
                               ...+++.++-+++-|+..++....+.+.  +.++.++.+++ +..+.+.+.++.++.|+.....  +    
T Consensus       229 ~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~l~~~~~~~i~~l~~i~~~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~  308 (477)
T d1ho8a_         229 IVATNSNHLGIQLQYHSLLLIWLLTFNPVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVI  308 (477)
T ss_dssp             -------CCHHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHH
T ss_pred             hhcccCCCccHHHHHHHHHHHHHHHcCHHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhhhhhHH
Confidence                     2367999999999999988887777664  45888898887 6678899999999999987622  2    


Q ss_pred             hhhhhhcCCHHHHHHHhCC--CChhHHHHHHH-------HHHHhccCcccHHHHH-------------------------
Q 044999          255 ITPVAEAGAIPLYAELLQG--PDSTGKEISED-------VFCILAVSEANANAIA-------------------------  300 (461)
Q Consensus       255 ~~~~~~~g~i~~L~~ll~~--~~~~~~~~a~~-------~L~~l~~~~~~~~~i~-------------------------  300 (461)
                      ...++..++++.+-.+...  .|+++.+..-.       ....++..++...++-                         
T Consensus       309 ~~~~v~~~~l~~l~~L~~r~~~Dedl~edl~~L~~~L~~~~k~lTsfd~Y~~Ev~Sg~L~WSP~H~se~FW~EN~~kf~e  388 (477)
T d1ho8a_         309 KQLLLLGNALPTVQSLSERKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKK  388 (477)
T ss_dssp             HHHHHHHCHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSS
T ss_pred             HHHHHHcchhHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHhcCCCCCCCCcCChhHHHHHHHhhcc
Confidence            2334455655554444332  26665433221       1122333333333322                         


Q ss_pred             ------HHHHHHhc----------cCCHHHHHHHHHHHHHhhC-CCCchhHHhhcCCHHHHHHhhcCCCHHHHHHHHHHH
Q 044999          301 ------EHLVRILR----------EGDNEANAAAADVLWDLAG-YKHSVPVIRNSGAIPILVNLLRGENDEVREKVSGAI  363 (461)
Q Consensus       301 ------~~l~~ll~----------~~~~~~~~~a~~~L~~l~~-~~~~~~~l~~~g~i~~L~~ll~~~~~~v~~~a~~~L  363 (461)
                            ..|+++|.          +.++.+..-||.=++.++. +|..+..+-+.|+=..+++++.+++++|+.+|+.|+
T Consensus       389 ~~~~llk~L~~lL~~~~~~~~~~~s~D~~~lAVAc~DiGefvr~~P~gr~il~~lg~K~~vM~Lm~h~d~~Vr~eAL~av  468 (477)
T d1ho8a_         389 DNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKAT  468 (477)
T ss_dssp             GGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHhhcccccccccCCCcceeehhhhhHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHH
Confidence                  78888885          3367888899999999995 688899898999999999999999999999999998


Q ss_pred             HHhc
Q 044999          364 AQLS  367 (461)
Q Consensus       364 ~~l~  367 (461)
                      ..+.
T Consensus       469 Qklm  472 (477)
T d1ho8a_         469 QAII  472 (477)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8764

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.99  E-value=2.2e-07  Score=94.41  Aligned_cols=382  Identities=12%  Similarity=0.049  Sum_probs=234.9

Q ss_pred             HhHHHHHHHhhcC--CHHHHHHHHHHHHhhc--CCCc------------hhHHHh-hHHHHHHhhccCCCCCCCcHHHHH
Q 044999           10 EAFNRFEQAVVSG--SEALQVKALTKLARVS--KFAP------------QDILAA-TIPILARLLGENNFSGNLTRSIQQ   72 (461)
Q Consensus        10 ~~~~~l~~ll~~~--~~~~~~~a~~~l~~la--~~~~------------~~~l~~-~i~~l~~~l~~~~~~~~~~~~~~~   72 (461)
                      +.+..+.+.+.+.  +..+|..|+..|.+.-  +...            ....+. +...+++.+.+    ++.   ..+
T Consensus        35 ~f~~~L~~i~~~~~~~~~iR~~A~i~lKn~i~~~~~~~~~~~~~~~~~i~~~~k~~ik~~ll~~l~~----~~~---~~~  107 (876)
T d1qgra_          35 TFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLHTLGT----ETY---RPS  107 (876)
T ss_dssp             HHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTT----CCS---SSC
T ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhccccchhhhhhcccccCCHHHHHHHHHHHHHHhcC----CcH---HHH
Confidence            3455566666554  4678999999888766  2111            112222 56677788875    333   444


Q ss_pred             HHHHHHHHHHhcCCchhHHHHH-h--cCCHHHHHhcCCCCC--HHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHH
Q 044999           73 AAAYCLKQIASQADGALATEIG-Q--SGVINSVLRLFPQSD--DSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDL  147 (461)
Q Consensus        73 ~a~~~L~~l~~~~~~~~~~~~~-~--~~~l~~L~~ll~~~~--~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~l  147 (461)
                      .++.++..++..       .+. +  .+.++.|.+.+.+++  +.++..+..++..++..-......-.....++.++..
T Consensus       108 ~~a~~i~~i~~~-------~~p~~~Wpeli~~L~~~l~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~il~~i~~~  180 (876)
T d1qgra_         108 SASQCVAGIACA-------EIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQG  180 (876)
T ss_dssp             HHHHHHHHHHHH-------HGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH-------HCCccccHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
Confidence            567788888762       111 1  245788888876543  5667677778777764221111111112356677777


Q ss_pred             hcCC--ChHHHHHHHHHHHHhhCC-hHHH-HHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCchh-HHHHHhcCC
Q 044999          148 LNSC--NDGTRRYLLEILSALALL-REVR-RVLICLGGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRA-RRLLVELGV  222 (461)
Q Consensus       148 l~~~--~~~~~~~a~~~L~~l~~~-~~~~-~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~-~~~~~~~~~  222 (461)
                      +.+.  +..++..++.++.+.... .... ......-.++.+...+.+++++++..++.++..+...... -........
T Consensus       181 l~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~l  260 (876)
T d1qgra_         181 MRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPAL  260 (876)
T ss_dssp             HSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTH
T ss_pred             HcCcCccHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            7654  457889999988877632 2211 1111222467777888888999999999999999875554 222222334


Q ss_pred             hHHHHHhcccCCHHHHHHHHHHHHHHhcCcc-----------------ch----hhhhhcCCHHHHHHHhCCC-------
Q 044999          223 IPGLVELFHIGDWTTKLVAGNTLGVVAAHVE-----------------YI----TPVAEAGAIPLYAELLQGP-------  274 (461)
Q Consensus       223 i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~-----------------~~----~~~~~~g~i~~L~~ll~~~-------  274 (461)
                      .+.+...+.+..++++..+...+..++....                 ..    ........++.+...+...       
T Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~  340 (876)
T d1qgra_         261 FAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDD  340 (876)
T ss_dssp             HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTT
T ss_pred             HHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhHHHHHHHHHHHHHHHHHHhhHHHHHhcccccccc
Confidence            4556666777788888887777766654200                 00    0011112344444444322       


Q ss_pred             ChhHHHHHHHHHHHhccCcc--cHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCc-hhHHhhcCCHHHHHHhhcCC
Q 044999          275 DSTGKEISEDVFCILAVSEA--NANAIAEHLVRILREGDNEANAAAADVLWDLAGYKHS-VPVIRNSGAIPILVNLLRGE  351 (461)
Q Consensus       275 ~~~~~~~a~~~L~~l~~~~~--~~~~i~~~l~~ll~~~~~~~~~~a~~~L~~l~~~~~~-~~~l~~~g~i~~L~~ll~~~  351 (461)
                      +..++..+..++..++....  .-..+.+.+...+.+.++..++.++..+..+...... ...-.....++.+...+.++
T Consensus       341 ~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~i~~~l~~~~~~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~  420 (876)
T d1qgra_         341 DWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDP  420 (876)
T ss_dssp             CCCHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCS
T ss_pred             cchHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHhhccchHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhcCC
Confidence            33577888888877753322  2333337778888899999999999999988754322 11222335788899999999


Q ss_pred             CHHHHHHHHHHHHHhcC-ChhhHHHHHhCCC----hHHHHHhccCCCHHHHHHHHHHHHHhcC
Q 044999          352 NDEVREKVSGAIAQLSY-NEADRVALADAGA----VPIMIELLHDESEELRDNAAESLINFSE  409 (461)
Q Consensus       352 ~~~v~~~a~~~L~~l~~-~~~~~~~~~~~~~----i~~L~~ll~~~~~~~~~~a~~~L~~l~~  409 (461)
                      ++.++..++++++.++. .+.   .......    ++.+...+ +.++.++..+++++.++..
T Consensus       421 ~~~vr~~a~~~l~~~~~~~~~---~~~~~~~~~~~~~~l~~~l-~~~~~v~~~~~~~l~~l~~  479 (876)
T d1qgra_         421 SVVVRDTAAWTVGRICELLPE---AAINDVYLAPLLQCLIEGL-SAEPRVASNVCWAFSSLAE  479 (876)
T ss_dssp             SHHHHHHHHHHHHHHHHHCGG---GTSSTTTHHHHHHHHHHHT-TSCHHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHHHcch---hhhhHHHhhhHHHHHHHHh-cCCHHHHHHHHHHHHHHHH
Confidence            99999999999999986 322   1111222    34444444 4578899999999988763

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.97  E-value=2.4e-07  Score=94.12  Aligned_cols=400  Identities=15%  Similarity=0.155  Sum_probs=225.8

Q ss_pred             CCCcHHHhHHHHHHHhhcCC--HHHHHHHHHHHHhhc-CCCch---hHHHhhHHHHHHhhccCCCCCCCcHHHHHHHHHH
Q 044999            4 PDTNWEEAFNRFEQAVVSGS--EALQVKALTKLARVS-KFAPQ---DILAATIPILARLLGENNFSGNLTRSIQQAAAYC   77 (461)
Q Consensus         4 ~~~~~~~~~~~l~~ll~~~~--~~~~~~a~~~l~~la-~~~~~---~~l~~~i~~l~~~l~~~~~~~~~~~~~~~~a~~~   77 (461)
                      |...|.+.++.+.+.+.+++  ..++..+..+|..++ +....   ......++.++..+..    ...+..++..+..+
T Consensus       122 p~~~Wpeli~~L~~~l~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~il~~i~~~l~~----~~~~~~v~~~a~~~  197 (876)
T d1qgra_         122 PVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRK----EEPSNNVKLAATNA  197 (876)
T ss_dssp             GGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHST----TCSCHHHHHHHHHH
T ss_pred             CccccHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHcC----cCccHHHHHHHHHH
Confidence            44569999999999998765  677888899999887 32221   1222278888888876    55556677778888


Q ss_pred             HHHHHhcCCchhHHHHHhcCCHHHHHhcCCCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhcCCChHHHH
Q 044999           78 LKQIASQADGALATEIGQSGVINSVLRLFPQSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLNSCNDGTRR  157 (461)
Q Consensus        78 L~~l~~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~  157 (461)
                      +.+................-.++.+...+.++++.++..+..++..+....++.-.........+.+.....+.++.++.
T Consensus       198 l~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  277 (876)
T d1qgra_         198 LLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVAL  277 (876)
T ss_dssp             HHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHH
T ss_pred             HHHHHHHhhhhhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccccHHHHH
Confidence            88877631111111111223466777888899999999999999887765443322233333444455555566666666


Q ss_pred             HHHHHHHHhhCChHH----------------------------------------------------HH----------H
Q 044999          158 YLLEILSALALLREV----------------------------------------------------RR----------V  175 (461)
Q Consensus       158 ~a~~~L~~l~~~~~~----------------------------------------------------~~----------~  175 (461)
                      .++..+..++.....                                                    +.          .
T Consensus       278 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~  357 (876)
T d1qgra_         278 QGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLAT  357 (876)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHhhhhHHHHHHHHHHHHHHHHHHhhHHHHHhcccccccccchHHHHHHHHHHHHHH
Confidence            555554444311000                                                    00          0


Q ss_pred             HHhcCCHHH----HHHHHcCCCHHHHHHHHHHHHHhhcCchh-HHHHHhcCChHHHHHhcccCCHHHHHHHHHHHHHHhc
Q 044999          176 LICLGGLRY----LVEAVSFGSMVSRERACQAIGLLAVTGRA-RRLLVELGVIPGLVELFHIGDWTTKLVAGNTLGVVAA  250 (461)
Q Consensus       176 ~~~~~~l~~----l~~~l~~~~~~~~~~a~~~L~~l~~~~~~-~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~  250 (461)
                      .....+++.    +...+.+.++..+..++..++.+...... ...-.-...++.+...+.++++.++..++++++.++.
T Consensus       358 ~~~~~~~~~~~~~i~~~l~~~~~~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~~~vr~~a~~~l~~~~~  437 (876)
T d1qgra_         358 CCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICE  437 (876)
T ss_dssp             HHGGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred             HhhhhhhhhhHHHHHHhhccchHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHHH
Confidence            000122333    33334456677777888888877654432 2111223467888889999999999999999999886


Q ss_pred             C-cc-chhhhhhcCCHHHHHHHhCCCChhHHHHHHHHHHHhccCc-------------------ccHHHHHHHHHHHhcc
Q 044999          251 H-VE-YITPVAEAGAIPLYAELLQGPDSTGKEISEDVFCILAVSE-------------------ANANAIAEHLVRILRE  309 (461)
Q Consensus       251 ~-~~-~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~-------------------~~~~~i~~~l~~ll~~  309 (461)
                      . +. ......-...++.+...+. .++.++..++.++.++....                   .....+.+.+...+..
T Consensus       438 ~~~~~~~~~~~~~~~~~~l~~~l~-~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~~~~  516 (876)
T d1qgra_         438 LLPEAAINDVYLAPLLQCLIEGLS-AEPRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDR  516 (876)
T ss_dssp             HCGGGTSSTTTHHHHHHHHHHHTT-SCHHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTS
T ss_pred             HcchhhhhHHHhhhHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHh
Confidence            5 11 1111111123445555554 46888999999888874211                   1122333666666643


Q ss_pred             C---CHHHHHHHHHHHHHhhCC--CCchhHHhh--cCCHHHHHHhhcCC------CH-----HHHHHHHHHHHHhcCC--
Q 044999          310 G---DNEANAAAADVLWDLAGY--KHSVPVIRN--SGAIPILVNLLRGE------ND-----EVREKVSGAIAQLSYN--  369 (461)
Q Consensus       310 ~---~~~~~~~a~~~L~~l~~~--~~~~~~l~~--~g~i~~L~~ll~~~------~~-----~v~~~a~~~L~~l~~~--  369 (461)
                      .   ...++..+...+..+...  ......+..  ...++.+...+...      ..     ..+...+.++..+...  
T Consensus       517 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~  596 (876)
T d1qgra_         517 PDGHQNNLRSSAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQ  596 (876)
T ss_dssp             CSSCSTTHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred             hccccHhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhhhHHHHHHHHHHHHHHHHHHHHcc
Confidence            3   456778888888877743  222222221  11223333333211      11     1233344455555441  


Q ss_pred             hhhHHHHHhCCChHHHHHhccC--CCHHHHHHHHHHHHHhcC
Q 044999          370 EADRVALADAGAVPIMIELLHD--ESEELRDNAAESLINFSE  409 (461)
Q Consensus       370 ~~~~~~~~~~~~i~~L~~ll~~--~~~~~~~~a~~~L~~l~~  409 (461)
                      ......+. ...++.+.+++..  ++..++..+..++..++.
T Consensus       597 ~~~~~~~~-~~i~~~l~~~l~~~~~~~~~~~~~l~~l~~l~~  637 (876)
T d1qgra_         597 HQDALQIS-DVVMASLLRMFQSTAGSGGVQEDALMAVSTLVE  637 (876)
T ss_dssp             HHHHHTTH-HHHHHHHHHHC-----CCHHHHHHHHHHHHHHH
T ss_pred             hhhhhhhH-HHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHH
Confidence            11111111 1345666666643  456788888888887764

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.94  E-value=1.7e-07  Score=94.94  Aligned_cols=388  Identities=13%  Similarity=0.127  Sum_probs=225.7

Q ss_pred             hHHHHHHHhhcCCHHHHHHHHHHHHhhc-CCCchhHHHhhHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHhcCCchh
Q 044999           11 AFNRFEQAVVSGSEALQVKALTKLARVS-KFAPQDILAATIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQADGAL   89 (461)
Q Consensus        11 ~~~~l~~ll~~~~~~~~~~a~~~l~~la-~~~~~~~l~~~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~   89 (461)
                      ....+++.+.++++.+|..++.+++.++ .+-+...+-+.++.+++.+.+    ++ +...+..++.+|..++..-....
T Consensus        96 ik~~ll~~l~~~~~~vr~~~a~~i~~i~~~~~p~~~wpeli~~L~~~~~s----~~-~~~~~~~al~~l~~i~e~~~~~~  170 (861)
T d2bpta1          96 IKTNALTALVSIEPRIANAAAQLIAAIADIELPHGAWPELMKIMVDNTGA----EQ-PENVKRASLLALGYMCESADPQS  170 (861)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGTCCHHHHHHHHHHTST----TS-CHHHHHHHHHHHHHHHHTSSTTS
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhCCcCchHHHHHHHHHHhcC----CC-cHHHHHHHHHHHHHHHHHhhHHH
Confidence            3466777888999999999999999998 433333344578888888875    33 34445558889999986411111


Q ss_pred             HHHHHh-cCCHHHHHhcCC--CCCHHHHHHHHHHHHHHhccChhhHH-HHHHcCCHHHHHHHhcCCChHHHHHHHHHHHH
Q 044999           90 ATEIGQ-SGVINSVLRLFP--QSDDSFRTVLVKCLRVFVTFGNENRV-IVARNGGLEIVIDLLNSCNDGTRRYLLEILSA  165 (461)
Q Consensus        90 ~~~~~~-~~~l~~L~~ll~--~~~~~~~~~~~~~l~~l~~~~~~~~~-~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~  165 (461)
                      ...+.. ...+..+++.+.  ..+..++..+..++.++...-...-. .......++.+...+.+.++.++..++.++..
T Consensus       171 ~~~~~~~~~il~~i~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~  250 (861)
T d2bpta1         171 QALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCK  250 (861)
T ss_dssp             STTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHhHhHHhhhhhhHHHHhHHHHhcCCCHHHHHHHHHHHHH
Confidence            111100 112334444333  45678888888888877654332211 11122356677888899999999999999999


Q ss_pred             hhC-ChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCchh-HHHHHh----------------cCChHHHH
Q 044999          166 LAL-LREVRRVLICLGGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRA-RRLLVE----------------LGVIPGLV  227 (461)
Q Consensus       166 l~~-~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~-~~~~~~----------------~~~i~~L~  227 (461)
                      ++. .++.-......-....+.....+.++.++..++..+..++..... ......                ...++.+.
T Consensus       251 i~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~l~  330 (861)
T d2bpta1         251 IMSKYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLL  330 (861)
T ss_dssp             HHHHHGGGCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence            873 222212222222223334555677889999999988887654332 111111                11344455


Q ss_pred             Hhccc-------CCHHHHHHHHHHHHHHhcCccchhhhhhcCCHHHHHHHhCCCChhHHHHHHHHHHHhccCccc--HH-
Q 044999          228 ELFHI-------GDWTTKLVAGNTLGVVAAHVEYITPVAEAGAIPLYAELLQGPDSTGKEISEDVFCILAVSEAN--AN-  297 (461)
Q Consensus       228 ~ll~~-------~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~--~~-  297 (461)
                      ..+..       .+...+..+..++..++.....  .+. .-..+.+...+.+.++..+..+..++..+......  .. 
T Consensus       331 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~  407 (861)
T d2bpta1         331 NLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGN--HIL-EPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTY  407 (861)
T ss_dssp             HHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGG--GGH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHH
T ss_pred             HHHHHhhccccchhHHHHHHHHHHHHHHHhhcch--hhh-hhhcchhhhhhhhHHHHHHHHHHHHHHHHHhhcchhhHHH
Confidence            55542       2335666777777777654111  110 01134455566778899999999999988754432  12 


Q ss_pred             ---HHHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCchhHHhhcCCHHHHHHhh---cCCCHHHHHHHHHHHHHhcC--C
Q 044999          298 ---AIAEHLVRILREGDNEANAAAADVLWDLAGYKHSVPVIRNSGAIPILVNLL---RGENDEVREKVSGAIAQLSY--N  369 (461)
Q Consensus       298 ---~i~~~l~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~ll---~~~~~~v~~~a~~~L~~l~~--~  369 (461)
                         .+.+.++..+.+.++.++..++++++.++..-.  ..+.....++.++..+   ...++.++..+++++..+..  .
T Consensus       408 ~l~~~l~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~--~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~~l~~~~~  485 (861)
T d2bpta1         408 YVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVA--ESIDPQQHLPGVVQACLIGLQDHPKVATNCSWTIINLVEQLA  485 (861)
T ss_dssp             HHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHG--GGSCTTTTHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHhcCcchhhhhHHHHHHHHHHHHhc--hhhhhHHhhhhhhHHHHhccccChHHHHHHHHHHHHHHHHhh
Confidence               222888888899999999999999999875310  1111222333333332   13467788888877777754  1


Q ss_pred             hhhHHHHHh--CCChHHHHHhcc--CCCHHHHHHHHHHHHHhc
Q 044999          370 EADRVALAD--AGAVPIMIELLH--DESEELRDNAAESLINFS  408 (461)
Q Consensus       370 ~~~~~~~~~--~~~i~~L~~ll~--~~~~~~~~~a~~~L~~l~  408 (461)
                      +.....+..  ...+..++....  ..+..++..+..++..+.
T Consensus       486 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~i  528 (861)
T d2bpta1         486 EATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMV  528 (861)
T ss_dssp             SSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHH
T ss_pred             hcccchhhHHHhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Confidence            111110100  012334444432  234556666777766664

>d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Regulatory subunit H of the V-type ATPase
domain: Regulatory subunit H of the V-type ATPase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.74  E-value=7.3e-07  Score=80.51  Aligned_cols=309  Identities=10%  Similarity=0.065  Sum_probs=201.2

Q ss_pred             CHHHHHhcCCC-CCHHHHHHHHHHHHHHhccChhhHHH---HHHcCC--HHHHHHHhcCCChHHHHHHHHHHHHhhCCh-
Q 044999           98 VINSVLRLFPQ-SDDSFRTVLVKCLRVFVTFGNENRVI---VARNGG--LEIVIDLLNSCNDGTRRYLLEILSALALLR-  170 (461)
Q Consensus        98 ~l~~L~~ll~~-~~~~~~~~~~~~l~~l~~~~~~~~~~---~~~~g~--i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~-  170 (461)
                      ++..++++++. +++++.+.....+..+..+++.....   +.+...  -..+..++..++.-....+...+..++... 
T Consensus        75 ~~~~~l~lL~~~sk~d~vqyvL~Li~dLL~~d~~~~~~~~~~~~~~~~~~~~f~~~l~~~d~~~~~~s~~i~~ll~~~~~  154 (477)
T d1ho8a_          75 TLIPLIHLLSTSDNEDCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSLKGDFQTVLISGFNVVSLLVQNGL  154 (477)
T ss_dssp             THHHHHHHHHSCCCHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHCTTHHHHHHHHCSCSSHHHHHHHHHHHHHHHTSTTT
T ss_pred             HHHHHHHHHhhcCcHHHHHHHHHHHHHHHhcCcchhHHHHHHhhCccchhHHHHHhccCchhHHHHHHHHHHHHHHhccc
Confidence            46777887764 56676767666666666655433222   222221  223444555555566677777777776332 


Q ss_pred             HH---HHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCchhHHHHHh--cCChHHHHHhccc-------------
Q 044999          171 EV---RRVLICLGGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRARRLLVE--LGVIPGLVELFHI-------------  232 (461)
Q Consensus       171 ~~---~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~--~~~i~~L~~ll~~-------------  232 (461)
                      ..   .+.+..  ....+-.+....+.+.+..+..++..+...++.|..+..  ...++.+++.++.             
T Consensus       155 ~~~~~~e~l~~--~~~~l~~l~~~~~~~~~~i~v~~lq~llr~~~~R~~fw~~~~~~~~~l~~il~~a~~~~~~~~~~~~  232 (477)
T d1ho8a_         155 HNVKLVEKLLK--NNNLINILQNIEQMDTCYVCIRLLQELAVIPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVAT  232 (477)
T ss_dssp             CCHHHHHHHHH--CHHHHHHHHCTTCHHHHHHHHHHHHHHHTSHHHHHHHHTTHHHHHHHHHHHHHHHHC----------
T ss_pred             cccchHHHHHH--hhHHHHHhhcccccchHHHHHHHHHHHhcCccHHHHHHHcccchHHHHHHHHHHHhcccccchhhcc
Confidence            22   222222  233333444666888899999999999999888887743  4456677766652             


Q ss_pred             ----CCHHHHHHHHHHHHHHhcCccchhhhhhc--CCHHHHHHHhCCC-ChhHHHHHHHHHHHhccCcc--cH----HHH
Q 044999          233 ----GDWTTKLVAGNTLGVVAAHVEYITPVAEA--GAIPLYAELLQGP-DSTGKEISEDVFCILAVSEA--NA----NAI  299 (461)
Q Consensus       233 ----~~~~~~~~a~~~L~~l~~~~~~~~~~~~~--g~i~~L~~ll~~~-~~~~~~~a~~~L~~l~~~~~--~~----~~i  299 (461)
                          .....+..++-+++-|+.+++....+.+.  +.++.++.+++.. .+.+.+.++.+|.|+.....  ..    ..+
T Consensus       233 ~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~l~~~~~~~i~~l~~i~~~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~  312 (477)
T d1ho8a_         233 NSNHLGIQLQYHSLLLIWLLTFNPVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQLL  312 (477)
T ss_dssp             ---CCHHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHH
T ss_pred             cCCCccHHHHHHHHHHHHHHHcCHHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHH
Confidence                12367889999999999987777777766  4588899988644 67888899999999965432  11    112


Q ss_pred             H----HHHHHHhccC---CHHHHHHHHHH-------HHHhhC---------------CCCch-hHHh--------hc--C
Q 044999          300 A----EHLVRILREG---DNEANAAAADV-------LWDLAG---------------YKHSV-PVIR--------NS--G  339 (461)
Q Consensus       300 ~----~~l~~ll~~~---~~~~~~~a~~~-------L~~l~~---------------~~~~~-~~l~--------~~--g  339 (461)
                      +    ..++..|...   |+++.+..-..       +..+++               .|..+ +.+.        +.  .
T Consensus       313 v~~~~l~~l~~L~~r~~~Dedl~edl~~L~~~L~~~~k~lTsfd~Y~~Ev~Sg~L~WSP~H~se~FW~EN~~kf~e~~~~  392 (477)
T d1ho8a_         313 LLGNALPTVQSLSERKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYK  392 (477)
T ss_dssp             HHHCHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSGGGH
T ss_pred             HHcchhHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHhcCCCCCCCCcCChhHHHHHHHhhcccchH
Confidence            2    5555656443   55543221111       111221               12222 1122        11  2


Q ss_pred             CHHHHHHhhc----------CCCHHHHHHHHHHHHHhcC-ChhhHHHHHhCCChHHHHHhccCCCHHHHHHHHHHHHHhc
Q 044999          340 AIPILVNLLR----------GENDEVREKVSGAIAQLSY-NEADRVALADAGAVPIMIELLHDESEELRDNAAESLINFS  408 (461)
Q Consensus       340 ~i~~L~~ll~----------~~~~~v~~~a~~~L~~l~~-~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~  408 (461)
                      .+..|+++|.          +.++.+..-||.=++.+++ .|..|..+.+.|+=..+++++.+++++++.+|..++..+.
T Consensus       393 llk~L~~lL~~~~~~~~~~~s~D~~~lAVAc~DiGefvr~~P~gr~il~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm  472 (477)
T d1ho8a_         393 IFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAII  472 (477)
T ss_dssp             HHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhcccccccccCCCcceeehhhhhHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence            3788899986          2356677888899999999 9999999999999999999999999999999999988764

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: MTH187
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.23  E-value=7.7e-08  Score=70.79  Aligned_cols=109  Identities=16%  Similarity=0.122  Sum_probs=85.9

Q ss_pred             hcCCChHHHHHHHHHHHHhhCChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHH
Q 044999          148 LNSCNDGTRRYLLEILSALALLREVRRVLICLGGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRARRLLVELGVIPGLV  227 (461)
Q Consensus       148 l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~  227 (461)
                      |++.++.+|..|+.+|..+.           ...++.|+..+.++++.+|..++.+|+++..          .+.++.|.
T Consensus         1 L~D~~~~VR~~A~~aL~~~~-----------~~~~~~L~~~l~d~~~~vR~~a~~~L~~~~~----------~~~~~~L~   59 (111)
T d1te4a_           1 MADENKWVRRDVSTALSRMG-----------DEAFEPLLESLSNEDWRIRGAAAWIIGNFQD----------ERAVEPLI   59 (111)
T ss_dssp             CCSSCCCSSSSCCSSTTSCS-----------STTHHHHHHGGGCSCHHHHHHHHHHHGGGCS----------HHHHHHHH
T ss_pred             CCCcCHHHHHHHHHHHHHhC-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHhcch----------hhhHHHHH
Confidence            34556677777777766542           2357888999999999999999999987632          23578899


Q ss_pred             HhcccCCHHHHHHHHHHHHHHhcCccchhhhhhcCCHHHHHHHhCCCChhHHHHHHHHHH
Q 044999          228 ELFHIGDWTTKLVAGNTLGVVAAHVEYITPVAEAGAIPLYAELLQGPDSTGKEISEDVFC  287 (461)
Q Consensus       228 ~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~  287 (461)
                      .++.++++.++..++.+|+.+..          .+.++.|..+++++++.++..|..+|.
T Consensus        60 ~~l~d~~~~VR~~a~~aL~~i~~----------~~~~~~L~~ll~d~~~~vr~~A~~aL~  109 (111)
T d1te4a_          60 KLLEDDSGFVRSGAARSLEQIGG----------ERVRAAMEKLAETGTGFARKVAVNYLE  109 (111)
T ss_dssp             HHHHHCCTHHHHHHHHHHHHHCS----------HHHHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred             hhhccchhHHHHHHHHHHHHhCc----------cchHHHHHHHHcCCCHHHHHHHHHHHH
Confidence            99999999999999999998742          234788899999999999998887764

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: MTH187
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=97.94  E-value=8.8e-06  Score=59.28  Aligned_cols=108  Identities=19%  Similarity=0.152  Sum_probs=80.4

Q ss_pred             CCCChhHHHHHHHHHHHhccCcccHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCchhHHhhcCCHHHHHHhhcCC
Q 044999          272 QGPDSTGKEISEDVFCILAVSEANANAIAEHLVRILREGDNEANAAAADVLWDLAGYKHSVPVIRNSGAIPILVNLLRGE  351 (461)
Q Consensus       272 ~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~l~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~ll~~~  351 (461)
                      .++++.+|..|+.+|..+..  +    ..+.|+..+.++++.+|..|+.+|+++..          .+.++.|..++.++
T Consensus         2 ~D~~~~VR~~A~~aL~~~~~--~----~~~~L~~~l~d~~~~vR~~a~~~L~~~~~----------~~~~~~L~~~l~d~   65 (111)
T d1te4a_           2 ADENKWVRRDVSTALSRMGD--E----AFEPLLESLSNEDWRIRGAAAWIIGNFQD----------ERAVEPLIKLLEDD   65 (111)
T ss_dssp             CSSCCCSSSSCCSSTTSCSS--T----THHHHHHGGGCSCHHHHHHHHHHHGGGCS----------HHHHHHHHHHHHHC
T ss_pred             CCcCHHHHHHHHHHHHHhCH--H----HHHHHHHHHcCCCHHHHHHHHHHHHhcch----------hhhHHHHHhhhccc
Confidence            34555666666665554421  1    12556777777788888899999887642          24578899999999


Q ss_pred             CHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhccCCCHHHHHHHHHHHH
Q 044999          352 NDEVREKVSGAIAQLSYNEADRVALADAGAVPIMIELLHDESEELRDNAAESLI  405 (461)
Q Consensus       352 ~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~  405 (461)
                      ++.|+..++.+|+.+.. +         +.++.|..+++++++.++..|..+|.
T Consensus        66 ~~~VR~~a~~aL~~i~~-~---------~~~~~L~~ll~d~~~~vr~~A~~aL~  109 (111)
T d1te4a_          66 SGFVRSGAARSLEQIGG-E---------RVRAAMEKLAETGTGFARKVAVNYLE  109 (111)
T ss_dssp             CTHHHHHHHHHHHHHCS-H---------HHHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred             hhHHHHHHHHHHHHhCc-c---------chHHHHHHHHcCCCHHHHHHHHHHHH
Confidence            99999999999998753 1         24788889999999999999988873

>d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Mo25 protein
domain: Mo25 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.91  E-value=0.0023  Score=53.84  Aligned_cols=202  Identities=12%  Similarity=0.097  Sum_probs=153.3

Q ss_pred             HHHhcCCHHHHHhcCCCCCHHHHHHHHHHHHHHhccChhhH----HHHHHcCCHHHHHHHhc-CCChHHHHHHHHHHHHh
Q 044999           92 EIGQSGVINSVLRLFPQSDDSFRTVLVKCLRVFVTFGNENR----VIVARNGGLEIVIDLLN-SCNDGTRRYLLEILSAL  166 (461)
Q Consensus        92 ~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~----~~~~~~g~i~~L~~ll~-~~~~~~~~~a~~~L~~l  166 (461)
                      .+...+.+..|+..|..-+.+.++.++..+.++.......+    ..+.. . .+.+..++. -.++++...+-..|..+
T Consensus        64 e~~~~d~l~~Li~~L~~L~fE~RKD~~~if~~llR~~~~~~~p~v~Yl~~-~-~eil~~L~~gye~~eiAl~~G~mLREc  141 (330)
T d1upka_          64 ELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICT-Q-QNILFMLLKGYESPEIALNCGIMLREC  141 (330)
T ss_dssp             HHHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHT-C-THHHHHHHHGGGSTTTHHHHHHHHHHH
T ss_pred             HHHHhChHHHHHHhCCCCCCchhhhHHHHHHHHhhcCCCCCCccHHHHHc-C-HHHHHHHHhhcCCcchhhhhhHHHHHH
Confidence            56667889999999999999989999988887776433332    22322 1 233333332 23456777888889999


Q ss_pred             hCChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCchh-HHHHHhc---CChHHHHHhcccCCHHHHHHHH
Q 044999          167 ALLREVRRVLICLGGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRA-RRLLVEL---GVIPGLVELFHIGDWTTKLVAG  242 (461)
Q Consensus       167 ~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~-~~~~~~~---~~i~~L~~ll~~~~~~~~~~a~  242 (461)
                      ..++.....+.....+..++++.+.++-++...|..++..+-..++. ...+...   .++..+-.++.+++--+++.++
T Consensus       142 ik~e~lak~iL~s~~f~~fF~yv~~~~FdiasDAf~TfkelLt~hk~~~aefl~~Nyd~Ff~~~~~LL~s~NYVtrRqSl  221 (330)
T d1upka_         142 IRHEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSL  221 (330)
T ss_dssp             HTSHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHH
T ss_pred             HhhHHHHHHHHccHHHHHHHHHHcCCchHHHHHHHHHHHHHHHhCHHHHHHHHHHhHHHHHHHHHHHhcCCchHHHHHHH
Confidence            99999999999999999999999999999999999999987766654 4444443   3566777889999999999999


Q ss_pred             HHHHHHhcCccchhhhhh----cCCHHHHHHHhCCCChhHHHHHHHHHHHhccCccc
Q 044999          243 NTLGVVAAHVEYITPVAE----AGAIPLYAELLQGPDSTGKEISEDVFCILAVSEAN  295 (461)
Q Consensus       243 ~~L~~l~~~~~~~~~~~~----~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~  295 (461)
                      ..|+.+-.+..+...+..    ..-+..++.+|++.+..++..|-.++.-+..+|..
T Consensus       222 KLLgelLldr~N~~vm~~Yvs~~~nLkl~M~LLrd~sk~Iq~EAFhVFKvFVANpnK  278 (330)
T d1upka_         222 KLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNK  278 (330)
T ss_dssp             HHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSSC
T ss_pred             HHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHhcCchhhHHHHhhhHhhhhhcCCCC
Confidence            999999988666655432    24467788888998999999888888888666654

>d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Mo25 protein
domain: Mo25 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.46  E-value=0.0061  Score=51.20  Aligned_cols=197  Identities=11%  Similarity=0.063  Sum_probs=151.6

Q ss_pred             HHHcCCHHHHHHHhcCCChHHHHHHHHHHHHhhCC-----hHHHHHHHhc-CCHHHHHHHHcCCCHHHHHHHHHHHHHhh
Q 044999          135 VARNGGLEIVIDLLNSCNDGTRRYLLEILSALALL-----REVRRVLICL-GGLRYLVEAVSFGSMVSRERACQAIGLLA  208 (461)
Q Consensus       135 ~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~-----~~~~~~~~~~-~~l~~l~~~l~~~~~~~~~~a~~~L~~l~  208 (461)
                      +...+.+..|+..|..-+.+.|..+..+..++...     ....+.+... .++..|+....  ++++-..+-..|+.+.
T Consensus        65 ~~~~d~l~~Li~~L~~L~fE~RKD~~~if~~llR~~~~~~~p~v~Yl~~~~eil~~L~~gye--~~eiAl~~G~mLREci  142 (330)
T d1upka_          65 LYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYE--SPEIALNCGIMLRECI  142 (330)
T ss_dssp             HHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGG--STTTHHHHHHHHHHHH
T ss_pred             HHHhChHHHHHHhCCCCCCchhhhHHHHHHHHhhcCCCCCCccHHHHHcCHHHHHHHHhhcC--CcchhhhhhHHHHHHH
Confidence            44456788888888888999999999999988732     2233555543 24444444433  4566667777888888


Q ss_pred             cCchhHHHHHhcCChHHHHHhcccCCHHHHHHHHHHHHHHhc-Cccchhhhhhc---CCHHHHHHHhCCCChhHHHHHHH
Q 044999          209 VTGRARRLLVELGVIPGLVELFHIGDWTTKLVAGNTLGVVAA-HVEYITPVAEA---GAIPLYAELLQGPDSTGKEISED  284 (461)
Q Consensus       209 ~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~---g~i~~L~~ll~~~~~~~~~~a~~  284 (461)
                      .+....+.+.....+..+++.++.++-++...|..++..+-. ++.....+...   .++..+-.++.+++.-.+..++.
T Consensus       143 k~e~lak~iL~s~~f~~fF~yv~~~~FdiasDAf~TfkelLt~hk~~~aefl~~Nyd~Ff~~~~~LL~s~NYVtrRqSlK  222 (330)
T d1upka_         143 RHEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLK  222 (330)
T ss_dssp             TSHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHH
T ss_pred             hhHHHHHHHHccHHHHHHHHHHcCCchHHHHHHHHHHHHHHHhCHHHHHHHHHHhHHHHHHHHHHHhcCCchHHHHHHHH
Confidence            888888888888889999999999999999999999987644 44433334333   45677888999999999999999


Q ss_pred             HHHHhccCcccHHHHH---------HHHHHHhccCCHHHHHHHHHHHHHhhCCCCchh
Q 044999          285 VFCILAVSEANANAIA---------EHLVRILREGDNEANAAAADVLWDLAGYKHSVP  333 (461)
Q Consensus       285 ~L~~l~~~~~~~~~i~---------~~l~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~  333 (461)
                      .|+.+-.+..+...+.         ..++.+|++.+..++..|..++.-+..+|..-.
T Consensus       223 LLgelLldr~N~~vm~~Yvs~~~nLkl~M~LLrd~sk~Iq~EAFhVFKvFVANpnKp~  280 (330)
T d1upka_         223 LLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNKTQ  280 (330)
T ss_dssp             HHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSSCCH
T ss_pred             HHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHhcCchhhHHHHhhhHhhhhhcCCCCCH
Confidence            9999988888877664         778889999999999999999999998765433

>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Leucine-rich repeat variant
domain: Leucine-rich repeat variant
species: Azotobacter vinelandii [TaxId: 354]

Probab=97.46  E-value=8.8e-05  Score=61.16  Aligned_cols=160  Identities=19%  Similarity=0.123  Sum_probs=83.1

Q ss_pred             cCCHHHHHhcCCCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHhhCChHHHHH
Q 044999           96 SGVINSVLRLFPQSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLNSCNDGTRRYLLEILSALALLREVRRV  175 (461)
Q Consensus        96 ~~~l~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~  175 (461)
                      +-.+..|..+++++++.|+..++..+.                  .+.+..++.+.+..+|..+...+   .        
T Consensus        65 ~a~~~~L~~Ll~D~d~~VR~~AA~~Lp------------------~~~L~~L~~D~d~~VR~~aa~~l---~--------  115 (233)
T d1lrva_          65 YSPVEALTPLIRDSDEVVRRAVAYRLP------------------REQLSALMFDEDREVRITVADRL---P--------  115 (233)
T ss_dssp             TSCGGGGGGGTTCSSHHHHHHHHTTSC------------------SGGGGGTTTCSCHHHHHHHHHHS---C--------
T ss_pred             cCCHHHHHHHhcCCCHHHHHHHHHHcC------------------HHHHHHHhcCCChhHHHHHHhcc---C--------
Confidence            334667788888888888887775431                  13355556666666665555432   0        


Q ss_pred             HHhcCCHHHHHHHHcCCCHHHHHHHHHHH-----HHhhcCchh--HHHHHhcCChHHHHHhcccCCHHHHHHHHHHHHHH
Q 044999          176 LICLGGLRYLVEAVSFGSMVSRERACQAI-----GLLAVTGRA--RRLLVELGVIPGLVELFHIGDWTTKLVAGNTLGVV  248 (461)
Q Consensus       176 ~~~~~~l~~l~~~l~~~~~~~~~~a~~~L-----~~l~~~~~~--~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l  248 (461)
                            .+.|..++.++++.+|..++..+     ..+....+.  +..+...-..+.|..+++++++.++..++..+   
T Consensus       116 ------~~~L~~Ll~D~d~~VR~~aa~~~~~~~L~~L~~D~d~~VR~~aA~~~~~~~L~~l~~D~d~~VR~~aa~~L---  186 (233)
T d1lrva_         116 ------LEQLEQMAADRDYLVRAYVVQRIPPGRLFRFMRDEDRQVRKLVAKRLPEESLGLMTQDPEPEVRRIVASRL---  186 (233)
T ss_dssp             ------TGGGGGGTTCSSHHHHHHHHHHSCGGGGGGTTTCSCHHHHHHHHHHSCGGGGGGSTTCSSHHHHHHHHHHC---
T ss_pred             ------HHHHHHHhcCCCHHHHHHHHhccchhHHHHHhcCCCHHHHHHHHHhcCHHHHHHHccCCCHHHHHHHHHhc---
Confidence                  12334444555555555554321     011111100  11111122344555555566666665544322   


Q ss_pred             hcCccchhhhhhcCCHHHHHHHhCCCChhHHHHHHHHHHHhccCcccHHHHHHHHHHHhccCCHHHHHHHHH
Q 044999          249 AAHVEYITPVAEAGAIPLYAELLQGPDSTGKEISEDVFCILAVSEANANAIAEHLVRILREGDNEANAAAAD  320 (461)
Q Consensus       249 ~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~l~~ll~~~~~~~~~~a~~  320 (461)
                                    ..+.|..++++.++.++..+...+             .+.++..|.+.+++|+..++.
T Consensus       187 --------------~~~~L~~l~~D~d~~VR~aaae~~-------------~~~ll~~L~D~d~~VR~aA~~  231 (233)
T d1lrva_         187 --------------RGDDLLELLHDPDWTVRLAAVEHA-------------SLEALRELDEPDPEVRLAIAG  231 (233)
T ss_dssp             --------------CGGGGGGGGGCSSHHHHHHHHHHS-------------CHHHHHHCCCCCHHHHHHHHC
T ss_pred             --------------CcHHHHHHHhCCCHHHHHHHHHhc-------------cHHHHHHhCCCCHHHHHHHHH
Confidence                          124455566666676666554211             145667777778888887753

>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Leucine-rich repeat variant
domain: Leucine-rich repeat variant
species: Azotobacter vinelandii [TaxId: 354]

Probab=97.33  E-value=4.8e-05  Score=62.82  Aligned_cols=89  Identities=12%  Similarity=0.089  Sum_probs=59.1

Q ss_pred             HhcCCCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHhhCChHHHHHHHhcCCH
Q 044999          103 LRLFPQSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLNSCNDGTRRYLLEILSALALLREVRRVLICLGGL  182 (461)
Q Consensus       103 ~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l  182 (461)
                      -.+|.++..+++..++.                  .-.+..|..+++++++.||..|+..|.                 .
T Consensus        48 ~~~l~~p~~e~Ra~Aa~------------------~a~~~~L~~Ll~D~d~~VR~~AA~~Lp-----------------~   92 (233)
T d1lrva_          48 VQYLADPFWERRAIAVR------------------YSPVEALTPLIRDSDEVVRRAVAYRLP-----------------R   92 (233)
T ss_dssp             GGGTTCSSHHHHHHHHT------------------TSCGGGGGGGTTCSSHHHHHHHHTTSC-----------------S
T ss_pred             HHHhcCCcHHHHHHHHh------------------cCCHHHHHHHhcCCCHHHHHHHHHHcC-----------------H
Confidence            34666777776655542                  123566888999999999998875431                 2


Q ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhcccCCHHHHHHHHH
Q 044999          183 RYLVEAVSFGSMVSRERACQAIGLLAVTGRARRLLVELGVIPGLVELFHIGDWTTKLVAGN  243 (461)
Q Consensus       183 ~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~  243 (461)
                      +.+..++.+++..+|..++..+                 ..+.|..++.++++.++..++.
T Consensus        93 ~~L~~L~~D~d~~VR~~aa~~l-----------------~~~~L~~Ll~D~d~~VR~~aa~  136 (233)
T d1lrva_          93 EQLSALMFDEDREVRITVADRL-----------------PLEQLEQMAADRDYLVRAYVVQ  136 (233)
T ss_dssp             GGGGGTTTCSCHHHHHHHHHHS-----------------CTGGGGGGTTCSSHHHHHHHHH
T ss_pred             HHHHHHhcCCChhHHHHHHhcc-----------------CHHHHHHHhcCCCHHHHHHHHh
Confidence            4466777888999998876532                 1345556666777777766553

>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Lipovitellin-phosvitin complex, superhelical domain
family: Lipovitellin-phosvitin complex, superhelical domain
domain: Lipovitellin-phosvitin complex, superhelical domain
species: Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]

Probab=96.25  E-value=0.28  Score=42.08  Aligned_cols=161  Identities=12%  Similarity=0.098  Sum_probs=101.5

Q ss_pred             ChHHHHHhcccCCHHHHHHHHHHHHHHhcC-ccchhhhhhcCCHHHHHHHhCCC----ChhHHHHHHHHHHHhcc----C
Q 044999          222 VIPGLVELFHIGDWTTKLVAGNTLGVVAAH-VEYITPVAEAGAIPLYAELLQGP----DSTGKEISEDVFCILAV----S  292 (461)
Q Consensus       222 ~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~g~i~~L~~ll~~~----~~~~~~~a~~~L~~l~~----~  292 (461)
                      .+..+.+++.++..... .+...+..++.. ..... .     +..+..++++.    ++.++..+.-+++++..    .
T Consensus        89 a~~~i~~~I~~~~ls~~-ea~~~l~~l~~~~~Pt~~-~-----l~~~~~l~~~~~~~~~~~l~~~a~La~gslv~~~c~~  161 (336)
T d1lsha1          89 ALLFLKRTLASEQLTSA-EATQIVASTLSNQQATRE-S-----LSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCAN  161 (336)
T ss_dssp             HHHHHHHHHHTTCSCHH-HHHHHHHHHHHTCCCCHH-H-----HHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHcCCCCHH-HHHHHHHHHhccCCCCHH-H-----HHHHHHHHcCcccccchhHHHHHHHHHHHHHHHHhcC
Confidence            35556666665543333 233455555544 22222 2     56777777653    67788888888877732    2


Q ss_pred             -ccc----HHHHHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCchhHHhhcCCHHHHHHhhcC-------CCHHHHHHHH
Q 044999          293 -EAN----ANAIAEHLVRILREGDNEANAAAADVLWDLAGYKHSVPVIRNSGAIPILVNLLRG-------ENDEVREKVS  360 (461)
Q Consensus       293 -~~~----~~~i~~~l~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~ll~~-------~~~~v~~~a~  360 (461)
                       +.+    ...+...+.+....++.+.+..++.+|+|+..          .+.++.|..++.+       .+..++..|+
T Consensus       162 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~----------p~~i~~l~~~l~~~~~~~~~~~~~vR~aAi  231 (336)
T d1lsha1         162 TVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQ----------PNSIKKIQRFLPGQGKSLDEYSTRVQAEAI  231 (336)
T ss_dssp             CSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC----------GGGHHHHHTTSTTSSSCCCCSCHHHHHHHH
T ss_pred             CCCCcHHHHHHHHHHHHHhhcccchHHHHHHHHHHhccCC----------HhHHHHHHHHhcccccccccccHHHHHHHH
Confidence             122    22233555566667788888899999999942          2456777777753       2567999999


Q ss_pred             HHHHHhcC-ChhhHHHHHhCCChHHHHHhc--cCCCHHHHHHHHHHHHHh
Q 044999          361 GAIAQLSY-NEADRVALADAGAVPIMIELL--HDESEELRDNAAESLINF  407 (461)
Q Consensus       361 ~~L~~l~~-~~~~~~~~~~~~~i~~L~~ll--~~~~~~~~~~a~~~L~~l  407 (461)
                      ++|.+++. ++..        +.+.+..++  ...++++|..|..+|...
T Consensus       232 ~Alr~~~~~~p~~--------v~~~l~~i~~n~~e~~EvRiaA~~~lm~t  273 (336)
T d1lsha1         232 MALRNIAKRDPRK--------VQEIVLPIFLNVAIKSELRIRSCIVFFES  273 (336)
T ss_dssp             HTTTTGGGTCHHH--------HHHHHHHHHHCTTSCHHHHHHHHHHHHHT
T ss_pred             HHHHHhhhcCcHH--------HHHHHHHHHcCCCCChHHHHHHHHHHHhc
Confidence            99999987 4331        123444544  346899999988888664

>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Lipovitellin-phosvitin complex, superhelical domain
family: Lipovitellin-phosvitin complex, superhelical domain
domain: Lipovitellin-phosvitin complex, superhelical domain
species: Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]

Probab=95.37  E-value=0.7  Score=39.52  Aligned_cols=242  Identities=15%  Similarity=0.112  Sum_probs=136.3

Q ss_pred             HHHHhcCCCCCHHHHHHHHHHHHHHhccChhhHHHHH----HcC---CHHHHHHHhcCCChHHHHHHHHHHHHhh-CChH
Q 044999          100 NSVLRLFPQSDDSFRTVLVKCLRVFVTFGNENRVIVA----RNG---GLEIVIDLLNSCNDGTRRYLLEILSALA-LLRE  171 (461)
Q Consensus       100 ~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~----~~g---~i~~L~~ll~~~~~~~~~~a~~~L~~l~-~~~~  171 (461)
                      -.|+++++.-+.+.......-    ....+..+..+.    ..|   .+..+.+++.+..... ..|...+..+. ...+
T Consensus        46 ~~Lv~~lR~~~~e~l~~v~~~----~~~~~~~r~~~lDal~~~GT~~a~~~i~~~I~~~~ls~-~ea~~~l~~l~~~~~P  120 (336)
T d1lsha1          46 LRLTAFLRNVDAGVLQSIWHK----LHQQKDYRRWILDAVPAMATSEALLFLKRTLASEQLTS-AEATQIVASTLSNQQA  120 (336)
T ss_dssp             HHHHHHHTTSCHHHHHHHHHH----HTTSHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCSCH-HHHHHHHHHHHHTCCC
T ss_pred             HHHHHHHHCCCHHHHHHHHHH----HhcChhHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCH-HHHHHHHHHHhccCCC
Confidence            356666776665432222211    123334444433    223   3444566665544322 23344444444 1122


Q ss_pred             HHHHHHhcCCHHHHHHHHcC----CCHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHh----cccCCHHHHHHHHH
Q 044999          172 VRRVLICLGGLRYLVEAVSF----GSMVSRERACQAIGLLAVTGRARRLLVELGVIPGLVEL----FHIGDWTTKLVAGN  243 (461)
Q Consensus       172 ~~~~~~~~~~l~~l~~~l~~----~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~l----l~~~~~~~~~~a~~  243 (461)
                      ..+      .+..+..++.+    .++.++..+.-+++++.........-.....++.+...    ...++.+.+..++.
T Consensus       121 t~~------~l~~~~~l~~~~~~~~~~~l~~~a~La~gslv~~~c~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~Lk  194 (336)
T d1lsha1         121 TRE------SLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALK  194 (336)
T ss_dssp             CHH------HHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             CHH------HHHHHHHHHcCcccccchhHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhcccchHHHHHHHH
Confidence            222      24455666654    36778888888887775432110000011233444443    44667777778899


Q ss_pred             HHHHHhcCccchhhhhhcCCHHHHHHHhCCC-------ChhHHHHHHHHHHHhccCcccHHHHHHHHHHHhcc--CCHHH
Q 044999          244 TLGVVAAHVEYITPVAEAGAIPLYAELLQGP-------DSTGKEISEDVFCILAVSEANANAIAEHLVRILRE--GDNEA  314 (461)
Q Consensus       244 ~L~~l~~~~~~~~~~~~~g~i~~L~~ll~~~-------~~~~~~~a~~~L~~l~~~~~~~~~i~~~l~~ll~~--~~~~~  314 (461)
                      +|+|+..          .+.++.+..++.+.       +..+|..|..+|.+++....  ..+.+.+..++.+  .++++
T Consensus       195 aLGN~g~----------p~~i~~l~~~l~~~~~~~~~~~~~vR~aAi~Alr~~~~~~p--~~v~~~l~~i~~n~~e~~Ev  262 (336)
T d1lsha1         195 ALGNAGQ----------PNSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDP--RKVQEIVLPIFLNVAIKSEL  262 (336)
T ss_dssp             HHHHHTC----------GGGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCH--HHHHHHHHHHHHCTTSCHHH
T ss_pred             HHhccCC----------HhHHHHHHHHhcccccccccccHHHHHHHHHHHHHhhhcCc--HHHHHHHHHHHcCCCCChHH
Confidence            9999863          12367777776432       46799999999999876542  2233566666644  47999


Q ss_pred             HHHHHHHHHHhhCCCCchhHHhhcCCHHHHHHhhc-CCCHHHHHHHHHHHHHhcC--ChhhH
Q 044999          315 NAAAADVLWDLAGYKHSVPVIRNSGAIPILVNLLR-GENDEVREKVSGAIAQLSY--NEADR  373 (461)
Q Consensus       315 ~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~ll~-~~~~~v~~~a~~~L~~l~~--~~~~~  373 (461)
                      |..|...|...  .|..       ..+..+...+. +++..|.......|.+++.  +|..+
T Consensus       263 RiaA~~~lm~t--~P~~-------~~l~~i~~~l~~E~~~QV~sfv~S~l~~la~s~~P~~~  315 (336)
T d1lsha1         263 RIRSCIVFFES--KPSV-------ALVSMVAVRLRREPNLQVASFVYSQMRSLSRSSNPEFR  315 (336)
T ss_dssp             HHHHHHHHHHT--CCCH-------HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCCSGGGH
T ss_pred             HHHHHHHHHhc--CCCH-------HHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhCCCcchH
Confidence            99998887653  3321       23445666664 4678888888889999998  44443

>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Exportin Cse1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.37  E-value=1.5  Score=43.26  Aligned_cols=132  Identities=12%  Similarity=0.030  Sum_probs=75.4

Q ss_pred             hhHHHHHHHHHHHhccCcccH--HHHHHHHHHHh----c--cCCHHHHHHHHHHHHHhhCCCCchhHHh-----hcCCHH
Q 044999          276 STGKEISEDVFCILAVSEANA--NAIAEHLVRIL----R--EGDNEANAAAADVLWDLAGYKHSVPVIR-----NSGAIP  342 (461)
Q Consensus       276 ~~~~~~a~~~L~~l~~~~~~~--~~i~~~l~~ll----~--~~~~~~~~~a~~~L~~l~~~~~~~~~l~-----~~g~i~  342 (461)
                      ...+..+...+..++......  ..+.+.+...+    .  +.++..++.++.+++.+...........     .....+
T Consensus       375 ~~~r~~a~~ll~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~e~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~  454 (959)
T d1wa5c_         375 DTRRRACTDFLKELKEKNEVLVTNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVD  454 (959)
T ss_dssp             -CHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHH
T ss_pred             ccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhhccCCccchHHHHHHHHHHHHHHhhhhhhhhhhhcccchhhHHH
Confidence            345666666666665432211  11113333333    2  3467788888888888764321111110     011222


Q ss_pred             HH----HHhhc---CCCHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhccCCCHHHHHHHHHHHHHhcCC
Q 044999          343 IL----VNLLR---GENDEVREKVSGAIAQLSYNEADRVALADAGAVPIMIELLHDESEELRDNAAESLINFSED  410 (461)
Q Consensus       343 ~L----~~ll~---~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~  410 (461)
                      .+    ...+.   ...+.++..++++++..+.... ...+.  ..++.++..+.++++.++..|+.++..+...
T Consensus       455 ~l~~~v~~~l~~~~~~~~~lr~~~~~~i~~~~~~~~-~~~~~--~~~~~l~~~L~~~~~~V~~~a~~al~~~~~~  526 (959)
T d1wa5c_         455 FFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLT-KAQLI--ELMPILATFLQTDEYVVYTYAAITIEKILTI  526 (959)
T ss_dssp             HHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSC-HHHHH--HHHHHHHHHTTCSCHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHccCCCchHHHHHHHHHHHHHHHhhcc-HHHHH--HHHHHHHHHhCCCchhHHHHHHHHHHHHHHh
Confidence            22    22332   3356788899999999887211 11221  3588899999999999999999999999754

>d2bnxa1 a.118.1.23 (A:133-475) Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Diap1 N-terninal region-like
domain: Diaphanous protein homolog 1, Diap1 (Dia1, DRF1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.88  E-value=3.2  Score=35.22  Aligned_cols=140  Identities=12%  Similarity=0.088  Sum_probs=95.6

Q ss_pred             hcCChHHHHHhcc----c-------CCHHHHHHHHHHHHHHhcCccchhhhhh-cCCHHHHHHHhCCCChhHHHHHHHHH
Q 044999          219 ELGVIPGLVELFH----I-------GDWTTKLVAGNTLGVVAAHVEYITPVAE-AGAIPLYAELLQGPDSTGKEISEDVF  286 (461)
Q Consensus       219 ~~~~i~~L~~ll~----~-------~~~~~~~~a~~~L~~l~~~~~~~~~~~~-~g~i~~L~~ll~~~~~~~~~~a~~~L  286 (461)
                      ..+|+..|+.+|.    .       .+...+..++.||..+.........+.+ .+++..++..+.++.+.++..+...|
T Consensus        43 ~~~G~~~L~~~L~~l~~~~~~~~~~~d~~~e~e~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L~s~~~~tr~~a~elL  122 (343)
T d2bnxa1          43 GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLL  122 (343)
T ss_dssp             HHHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTSSHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHH
T ss_pred             HhccHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHhccHHHHHHHHcChHHHHHHHHccCCCchHHHHHHHHHH
Confidence            3456666666664    1       1245677889999999988655555554 47899999999999999999999999


Q ss_pred             HHhccCc---ccHHHHH---------------HHHHHHhccC-CHHHHHHHHHHHHHhhCCCCc-------hhHHhhcCC
Q 044999          287 CILAVSE---ANANAIA---------------EHLVRILREG-DNEANAAAADVLWDLAGYKHS-------VPVIRNSGA  340 (461)
Q Consensus       287 ~~l~~~~---~~~~~i~---------------~~l~~ll~~~-~~~~~~~a~~~L~~l~~~~~~-------~~~l~~~g~  340 (461)
                      ..++..+   .....+.               ..+++.++++ +.+.+..++..+-.+..+++.       +..+...|.
T Consensus       123 ~~lc~~~~~~~g~~~vL~Al~~~~~~~e~~RF~~lv~~l~~~~~~ey~~a~m~lIN~li~~~~dl~~R~~lR~E~~~~Gl  202 (343)
T d2bnxa1         123 SALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGL  202 (343)
T ss_dssp             HHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTH
T ss_pred             HHHHhccCCCchHHHHHHHHHHHHHhcCCCcHHHHHHHHhccccHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHCCh
Confidence            8886432   2222222               7788877655 678888888888888866433       455557776


Q ss_pred             HHHHHHhhcCCCHHHHHH
Q 044999          341 IPILVNLLRGENDEVREK  358 (461)
Q Consensus       341 i~~L~~ll~~~~~~v~~~  358 (461)
                      .+.+-.+=...++.+..+
T Consensus       203 ~~il~~l~~~~~~~L~~Q  220 (343)
T d2bnxa1         203 HQVLQELREIENEDMKVQ  220 (343)
T ss_dssp             HHHHHHHTTCCCHHHHHH
T ss_pred             HHHHHHHHccCChHHHHH
Confidence            666555544455554443

>d2bnxa1 a.118.1.23 (A:133-475) Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Diap1 N-terninal region-like
domain: Diaphanous protein homolog 1, Diap1 (Dia1, DRF1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.54  E-value=4.4  Score=34.33  Aligned_cols=150  Identities=15%  Similarity=0.276  Sum_probs=95.2

Q ss_pred             CchhHHHHHhcCCHHHHHhcCC---------C--CCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhcCCChH
Q 044999           86 DGALATEIGQSGVINSVLRLFP---------Q--SDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLNSCNDG  154 (461)
Q Consensus        86 ~~~~~~~~~~~~~l~~L~~ll~---------~--~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~  154 (461)
                      +...-..+ ..+|+..|+.+|.         .  .+...+..+..|+..+..........+...+++..+...+.++.+.
T Consensus        35 ~~sWv~~F-~~~G~~~L~~~L~~l~~~~~~~~~~~d~~~e~e~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L~s~~~~  113 (343)
T d2bnxa1          35 PVSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPN  113 (343)
T ss_dssp             CHHHHHHH-HHHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTSSHHHHHHHHHSSSHHHHHHHTCCTTSHH
T ss_pred             CchHHHHH-HhccHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHhccHHHHHHHHcChHHHHHHHHccCCCchH
Confidence            33344444 3455555655542         1  1245677888999988865545556667788999999999999999


Q ss_pred             HHHHHHHHHHHhhCC---hHHHHHHH----------hcCCHHHHHHHHcCC-CHHHHHHHHHHHHHhhcCchh---H---
Q 044999          155 TRRYLLEILSALALL---REVRRVLI----------CLGGLRYLVEAVSFG-SMVSRERACQAIGLLAVTGRA---R---  214 (461)
Q Consensus       155 ~~~~a~~~L~~l~~~---~~~~~~~~----------~~~~l~~l~~~l~~~-~~~~~~~a~~~L~~l~~~~~~---~---  214 (461)
                      ++..|..+|..+|..   ++....+.          +.+-...+++.+... +.+.+..++..+-.+....++   |   
T Consensus       114 tr~~a~elL~~lc~~~~~~~g~~~vL~Al~~~~~~~e~~RF~~lv~~l~~~~~~ey~~a~m~lIN~li~~~~dl~~R~~l  193 (343)
T d2bnxa1         114 MMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHI  193 (343)
T ss_dssp             HHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHhcCCCcHHHHHHHHhccccHHHHHHHHHHHHHHHcCcccHHHHHHH
Confidence            999999999998832   22222222          234567777777655 668888877777777766554   2   


Q ss_pred             -HHHHhcCChHHHHHhcc-cCCHHH
Q 044999          215 -RLLVELGVIPGLVELFH-IGDWTT  237 (461)
Q Consensus       215 -~~~~~~~~i~~L~~ll~-~~~~~~  237 (461)
                       ..+...|. ..++.-++ .+++.+
T Consensus       194 R~E~~~~Gl-~~il~~l~~~~~~~L  217 (343)
T d2bnxa1         194 RSELMRLGL-HQVLQELREIENEDM  217 (343)
T ss_dssp             HHHHHHTTH-HHHHHHHTTCCCHHH
T ss_pred             HHHHHHCCh-HHHHHHHHccCChHH
Confidence             22334554 44555555 344443

>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Exportin Cse1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=88.84  E-value=0.86  Score=45.08  Aligned_cols=132  Identities=9%  Similarity=0.041  Sum_probs=96.2

Q ss_pred             hHHHHHhcc-cCCHHHHHHHHHHHHHHhcCccchhhhhhcCCHHHHHHHhCCC--ChhHHHHHHHHHHHhcc--------
Q 044999          223 IPGLVELFH-IGDWTTKLVAGNTLGVVAAHVEYITPVAEAGAIPLYAELLQGP--DSTGKEISEDVFCILAV--------  291 (461)
Q Consensus       223 i~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~ll~~~--~~~~~~~a~~~L~~l~~--------  291 (461)
                      ++.+..++. +.+++.++.|-.-|..+..++         |+...|+.++.+.  +..+|..|+-.|.|...        
T Consensus         4 ~~~l~~ll~~s~~~~~~k~Ae~~L~~~~~~p---------~f~~~L~~i~~~~~~~~~iR~~A~i~lKn~i~~~W~~~~~   74 (959)
T d1wa5c_           4 LETVAKFLAESVIASTAKTSERNLRQLETQD---------GFGLTLLHVIASTNLPLSTRLAGALFFKNFIKRKWVDENG   74 (959)
T ss_dssp             HHHHHHHHHHTTSGGGHHHHHHHHHHHHTST---------THHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHSBCSSS
T ss_pred             HHHHHHHHHHCCChHHHHHHHHHHHHHHcCC---------CHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhcccccc
Confidence            345566665 457778888888888876543         5577788887655  45789989988888732        


Q ss_pred             ----CcccHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhCC--CCchhHHhhcCCHHHHHHhhcCCCHHHHHHHHHHHHH
Q 044999          292 ----SEANANAIAEHLVRILREGDNEANAAAADVLWDLAGY--KHSVPVIRNSGAIPILVNLLRGENDEVREKVSGAIAQ  365 (461)
Q Consensus       292 ----~~~~~~~i~~~l~~ll~~~~~~~~~~a~~~L~~l~~~--~~~~~~l~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~  365 (461)
                          .++.+..+-..++..+.+.+..++...+.++..++..  |+.=     .+.++.|.+.++++++..+..++.+|..
T Consensus        75 ~~~i~~e~k~~Ik~~ll~~l~~~~~~ir~~l~~~i~~I~~~d~p~~W-----p~ll~~l~~~l~s~~~~~~~~~L~~l~~  149 (959)
T d1wa5c_          75 NHLLPANNVELIKKEIVPLMISLPNNLQVQIGEAISSIADSDFPDRW-----PTLLSDLASRLSNDDMVTNKGVLTVAHS  149 (959)
T ss_dssp             CBSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHSTTTC-----TTHHHHHHTTCCSSCTTHHHHHHHHHHH
T ss_pred             cCCCCHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCcccc-----HHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence                1223444448888888888899999999999998853  3221     3578889999998888888888888888


Q ss_pred             hcC
Q 044999          366 LSY  368 (461)
Q Consensus       366 l~~  368 (461)
                      +++
T Consensus       150 i~k  152 (959)
T d1wa5c_         150 IFK  152 (959)
T ss_dssp             HHG
T ss_pred             HHH
Confidence            875