Citrus Sinensis ID: 045021

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-
Protein Sequence
LTIDSCPKLQSLVAEEEKDQQQQLCELSCRLEYLILRYCKGLVKLPQSSLSLSSLREIEICRCHSLVSFPEVALPSKLKKIEIRECDALKSLPEAWMCGTNSSLEILKIWSCHSLPYIARVQLPPSLKRLDISHCDNIRTLTVEDGIQSSSRRYTSYLLEKLEIWDCPSLTCIFSKNELPATLESLEVGNQPPSLKSLNVWSCSKLESIAERLDNNTSLEMISILWCENLKFLPSGLHNLRQLQEIQLWGCENLVSFPEGGLPCAKLSKLGIYRCERLEALPKGLHNLKSLKKLRIGGKLPSLEEDGLPTNLHFLKIERNMEIWKSMIERGFHKFSSLRHLTIEGCDDDMVSFPPEDRRLGTTLPLPASLASLTIGDFPNLERLSSSIVDLQNLKYLKLYDCPKLKYFSEKGLPSSLLRLYIDECPLIEEKCRKDGEQYWDLLTHIPRVRIHLPVVFDDST
Secondary Structure (PSIPRED)
cEEEcccccccccccHHHHHHHHHHcccccccEEEEEEccccEEccccccccccccEEEccccccccccccccccccccEEEEEEccccEEccccccccccccccEEEEEccccccccccccccccccEEEEEcccccccccccccccccccccccccccEEEEccccccccccccccccccccccccccccccccEEEEEcccccccHHHcccccccccEEEEEcccccccccccccccccccEEEEEcccccEEEcccccccccccEEEEEcccccccccccccccccccEEEEccccccccccccccccccEEEccccccccccccccccccccccEEEEccccccccccccccccccccccccccccEEEEEcccccccccccccccccccEEEccccccccccccccccccccEEEccccHHHHHHHcccccccccccccccEEEEccEEEccccc
Secondary Structure Prediction (SSPRO)
ccccccHHHHccccccccHHcccccccccccEEEEccccccHHcccccccccccccEEEccccccccccccccccccccEEEccccccccccccccccccccccEEEEccccccccccccccccccccEEEccccccHHcccccccccccccHcccHHccEEEccccccHHccccHccccHHHHcccccccccccEEEEEcccccHHcccccccccccccEEEccccccHccccccccccccccEEEccccccHccccccccccccccEEEEccccHHHHccccccccccccEEEcccccccccccccccccHHEEEHccccccHcccccHHcccccccEEEccccccHHHHccHHHccccHHccccccccEEEEcccccHHHccHHHcccccccEEEccccccHcccccccccccccEEEccccHHHHHHHHcccccccccEccccEEEEcccccccccc
Coil and Loop (DISEMBL)
ltidscpklqSLVAEEEKDQQQQLCELSCRLEYLILRYCKGlvklpqsslslsslrEIEICrchslvsfpevalpsklkkIEIRECDAlkslpeawmcgtnssleILKIWSchslpyiarvqlppslkrldishcdnirtltvedgiqssSRRYTSYLLEkleiwdcpsltcifsknelpatleslevgnqppslkslnvwsCSKLESIAERLDNNTSLEMISILWCENLKFLPSGLHNLRQLQEIQLWgcenlvsfpegglpcaklsklgiyRCERLEALPKGLHNLKSLKklriggklpsleedglptnlhfLKIERNMEIWKSMIERGFHKFSSLRHltiegcdddmvsfppedrrlgttlplpaslasltigdfpnlerlsssivdlqnlkylklydcpklkyfsekglpssLLRLYIDECPLIEEKCRKDGEQYWDLLThiprvrihlpvvfddst
Flexible Loop (DISEMBL)
LTIDSCPKLQSLVAEEEKDQQQQLCELSCRLEYLILRYCKGLVKLPQSSLSLSSLREIEICRCHSlvsfpevalpsklkKIEIRECDALKSLPEAWMCGTNSSLEILKIWSCHSLPYIARVQLPPSLKRLDISHCDNIRtltvedgiqsssRRYTSYLLEKLEIWDCPSLTCIFSKNELPATLESLevgnqppslkSLNVWSCSKLESIAERLDNNTSLEMISILWCENLKFLPSGLHNLRQLQEIQLWGCENLVSFPEGGLPCAKLSKLGIYRCERLEALpkglhnlkslKKLRIGgklpsleedglptnlHFLKIERNMEIWKSMIERGFHKFSSLRHLTIEGCDDDMVSFPPEDRRLGTTLPLPASLASLTIGDFPNLERLSSSIVDLQNLKYLKLYDCPKLKyfsekglpssLLRLYIDECPLIEEKCRKDGEQYWDLLthiprvrihlpvvfddst
Low Complexity Region (SEG)
LTIDSCPKLQSLVAEEEKDQQQQLCELSCRLEYLILRYCKGLVKLPQsslslsslREIEICRCHSLVSFPEVALPSKLKKIEIRECDALKSLPEAWMCGTNSSLEILKIWSCHSLPYIARVQLPPSLKRLDISHCDNIRTLTVEDGIQSSSRRYTSYLLEKLEIWDCPSLTCIFSKNELPATLESLEVGNQPPSLKSLNVWSCSKLESIAERLDNNTSLEMISILWCENLKFLPSGLHNLRQLQEIQLWGCENLVSFPEGGLPCAKLSKLGIYRCERLEALPKGLHNLKSLKKLRIGGKLPSLEEDGLPTNLHFLKIERNMEIWKSMIERGFHKFSSLRHLTIEGCDDDMVSFPPEDRRLGTTLPLPASLASLTIGDFPNLERLSSSIVDLQNLKYLKLYDCPKLKYFSEKGLPSSLLRLYIDECPLIEEKCRKDGEQYWDLLTHIPRVRIHLPVVFDDST
Disordered region (IsUnstruct)
***********************LCELSCRLEYLILRYCKGLVKLPQSSLSLSSLREIEICRCHSLVSFPEVALPSKLKKIEIRECDALKSLPEAWMCGTNSSLEILKIWSCHSLPYIARVQLPPSLKRLDISHCDNIRTLTVEDGIQSSSRRYTSYLLEKLEIWDCPSLTCIFSKNELPATLESL********LKSLNVWSCSKLESIAERLDNNTSLEMISILWCENLKFLPSGLHNLRQLQEIQLWGCENLVSFPEGGLPCAKLSKLGIYRCERLEALPKGLHNLKSLKKLRIGGKLPSLEEDGLPTNLHFLKIERNMEIWKSMIERGFHKFSSLRHLTIEGCDDDMVSFP***RRLGTTLPLPASLASLTIGDFPNLERLSSSIVDLQNLKYLKLYDCPKLKYFSEKGLPSSLLRLYIDECPLIEEKCRKDGEQYWDLLTHIPRVRIHLPVVF****
Disordered Region (DISOPRED)
LTIDSCPKLQSLVAEEEKDQQQQLCELSCRLEYLILRYCKGLVKLPQSSLSLSSLREIEICRCHSLVSFPEVALPSKLKKIEIRECDALKSLPEAWMCGTNSSLEILKIWSCHSLPYIARVQLPPSLKRLDISHCDNIRTLTVEDGI*SSSRRYTSYLLEKLEIWDCPSLTCIFSKNELPATLESLEVGNQPPSLKSLNVWSCSKLESIAERLDNNTSLEMISILWCENLKFLPSGLHNLRQLQEIQLWGCENLVSFPEGGLPCAKLSKLGIYRCERLEALPKGLHNLKSLKKLRIGGKLPSLEE*GLPTNLHFLKIERNMEIWKSMI*RGFHKFSSLRHLTIEGCDDDMVSFPPEDRRLGTTLPLPASLASLTIGDFPNLERLSSSIVDLQNLKYLKLYDCPKLKYFSEKGLPSSLLRLYIDECPLIEEKCRKDGEQYWDLLTHIPRVRIHLPVVFD***
Disordered Region (DISEMBL)
LTIDSCPKLQSLV*********QLCELSCRLEYLILRYCKGLVKLPQSSLSLSSLREIEICRCHSLVSFPEVALPSKLKKIEIRECDALKSLPEAWMCGTNSSLEILKIWSCHSLPYIARVQLPPSLKRLDISHCDNIRTLTVEDGIQSSSRRYTSYLLEKLEIWDCPSLTCIFSKNELPATLESLEVGNQPPSLKSLNVWSCSKLESIAERLDNNTSLEMISILWCENLKFLPSGLHNLRQLQEIQLWGCENLVSFPEGGLPCAKLSKLGIYRCERLEALPKGLHNLKSLKKLRIGGKLPSLEEDGLPTNLHFLKIERNMEIWKSMIERGFHKFSSLRHLTIEGCDDDMVSFPPEDRRLGTTLPLPASLASLTIGDFPNLERLSSSIVDLQNLKYLKLYDCPKLKYFSEKGLPSSLLRLYIDECPLIEEKCRKDGEQYWDLLTHIPRVRIHLPVVFDDST
Disordered Region (DISPRO)
*TIDSCPKLQSLVAEEEKDQQQQLCELSCRLEYLILRYCKGLVKLPQSSLSLSSLREIEICRCHSLVSFPEVALPSKLKKIEIRECDALKSLPEAWMCGTNSSLEILKIWSCHSLPYIARVQLPPSLKRLDISHCDNIRTLTVEDGIQSSSRRYTSYLLEKLEIWDCPSLTCIFSKNELPATLESLEVGNQPPSLKSLNVWSCSKLESIAERLDNNTSLEMISILWCENLKFLPSGLHNLRQLQEIQLWGCENLVSFPEGGLPCAKLSKLGIYRCERLEALPKGLHNLKSLKKLRIGGKLPSLEEDGLPTNLHFLKIERNMEIWKSMIERGFHKFSSLRHLTIEGCDDDMVSFPPEDRRLGTTLPLPASLASLTIGDFPNLERLSSSIVDLQNLKYLKLYDCPKLKYFSEKGLPSSLLRLYIDECPLIEEKCRKDGEQYWDLLTHIPRVRIHLPV******
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
LTIDSCPKLQSLVAEEEKDQQQQLCELSCRLEYLILRYCKGLVKLPQSSLSLSSLREIEICRCHSLVSFPEVALPSKLKKIEIRECDALKSLPEAWMCGTNSSLEILKIWSCHSLPYIARVQLPPSLKRLDISHCDNIRTLTVEDGIQSSSRRYTSYLLEKLEIWDCPSLTCIFSKNELPATLESLEVGNQPPSLKSLNVWSCSKLESIAERLDNNTSLEMISILWCENLKFLPSGLHNLRQLQEIQLWGCENLVSFPEGGLPCAKLSKLGIYRCERLEALPKGLHNLKSLKKLRIGGKLPSLEEDGLPTNLHFLKIERNMEIWKSMIERGFHKFSSLRHLTIEGCDDDMVSFPPEDRRLGTTLPLPASLASLTIGDFPNLERLSSSIVDLQNLKYLKLYDCPKLKYFSEKGLPSSLLRLYIDECPLIEEKCRKDGEQYWDLLTHIPRVRIHLPVVFDDST
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	461	2.2.26 [Sep-21-2011]
Q9LRR5	1424	Putative disease resistan	yes	no	0.622	0.201	0.303	6e-23
Q7XA39	988	Putative disease resistan	N/A	no	0.353	0.164	0.315	1e-09
Q7XA40	992	Putative disease resistan	N/A	no	0.420	0.195	0.295	1e-08
O23530	1301	Protein SUPPRESSOR OF npr	no	no	0.542	0.192	0.274	2e-08
Q7XBQ9	970	Disease resistance protei	N/A	no	0.457	0.217	0.287	1e-07
Q9LVT1	623	Putative disease resistan	no	no	0.197	0.146	0.290	3e-06
Q9LZ25	811	Probable disease resistan	no	no	0.253	0.144	0.304	4e-06
Q9FKZ0	815	Probable disease resistan	no	no	0.208	0.117	0.38	1e-05
P26337	630	Putative adenylate cyclas	N/A	no	0.516	0.377	0.256	4e-05
P0CB16	1201	Putative disease resistan	no	no	0.509	0.195	0.279	4e-05

>sp|Q9LRR5|DRL21_ARATH Putative disease resistance protein At3g14460 OS=Arabidopsis thaliana GN=At3g14460 PE=3 SV=1

 Score =  108 bits (271), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 102/336 (30%), Positives = 155/336 (46%), Gaps = 49/336 (14%)

Query: 23   QLCELSCRLEYLILRYCKGLVKLPQS-SLSLSSLREIEICRCHSLVSFPEVALPSKLKKI 81
             L EL   L+ L +  C GL  LP++ + S  +L E+ I  CHSL SFP    P+ LK +
Sbjct: 1085 HLMELPQNLQSLHIDSCDGLTSLPENLTESYPNLHELLIIACHSLESFPGSHPPTTLKTL 1144

Query: 82   EIRECDALKSLPEAWMCGTNSSLEILKIWSCHSLPYIARVQLPPSLKRLDISHCDNIRTL 141
             IR+C  L          + S LE L I S  S      + L P L+ L I  C++ +T 
Sbjct: 1145 YIRDCKKLNFTESLQPTRSYSQLEYLFIGSSCSNLVNFPLSLFPKLRSLSIRDCESFKTF 1204

Query: 142  TVEDGIQSSSRRYTSYLLEKLEIWDCPSLTCIFSKNELPATLESLEVGNQPPSLKSLNVW 201
            ++  G+           LE LEI DCP+L   F +  LP            P L S+ + 
Sbjct: 1205 SIHAGLGDD-----RIALESLEIRDCPNLET-FPQGGLPT-----------PKLSSMLLS 1247

Query: 202  SCSKLESIAERLDNNTSLEMISILWCENLKFLPSGLHNLRQLQEIQLWGCENLVSFPEGG 261
            +C KL+++ E+L   TSL  + I+ C  ++ +P                         GG
Sbjct: 1248 NCKKLQALPEKLFGLTSLLSLFIIKCPEIETIPG------------------------GG 1283

Query: 262  LPCAKLSKLGIYRCERLEA-LPKGLHNLKSLKKLRIGG---KLPSLEEDG-LPTNLHFLK 316
             P + L  L I  C++L   +  GL +L++L+ L I G    + S  E+G LP ++  L+
Sbjct: 1284 FP-SNLRTLCISLCDKLTPRIEWGLRDLENLRNLEIDGGNEDIESFPEEGLLPKSVFSLR 1342

Query: 317  IERNMEIWKSMIERGFHKFSSLRHLTIEGCDDDMVS 352
            I R  E  K++  +GFH   ++  + I GCD   +S
Sbjct: 1343 ISR-FENLKTLNRKGFHDTKAIETMEISGCDKLQIS 1377

Potential disease resistance protein.
Arabidopsis thaliana (taxid: 3702)

>sp|Q7XA39|RGA4_SOLBU Putative disease resistance protein RGA4 OS=Solanum bulbocastanum GN=RGA4 PE=2 SV=1

 Score = 64.7 bits (156), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 59/187 (31%), Positives = 99/187 (52%), Gaps = 24/187 (12%)

Query: 125 PSLKRLDISHCDNIRTLTVEDGIQSSSRRYTSYLLEKLEIWDCPSLTCIFSKNELPATLE 184
           PSLK+L I    +++ L  E+G +         +LE++ I  CP    +F    L ++++
Sbjct: 785 PSLKKLRIWFFRSLKGLMKEEGEEKFP------MLEEMAILYCP----LFVFPTL-SSVK 833

Query: 185 SLEV-GNQPP----------SLKSLNVWSCSKLESIAERLDNN-TSLEMISILWCENLKF 232
            LEV GN             +L SL + +  +  S+ E +  + T+LE +S    +NLK 
Sbjct: 834 KLEVHGNTNTRGLSSISNLSTLTSLRIGANYRATSLPEEMFTSLTNLEFLSFFDFKNLKD 893

Query: 233 LPSGLHNLRQLQEIQLWGCENLVSFPEGGLP-CAKLSKLGIYRCERLEALPKGLHNLKSL 291
           LP+ L +L  L+ +Q+  C++L SFPE GL     L++L +  C+ L+ LP+GL +L +L
Sbjct: 894 LPTSLTSLNALKRLQIESCDSLESFPEQGLEGLTSLTQLFVKYCKMLKCLPEGLQHLTAL 953

Query: 292 KKLRIGG 298
             L + G
Sbjct: 954 TNLGVSG 960

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system which restricts the pathogen growth.

Solanum bulbocastanum (taxid: 147425)

>sp|Q7XA40|RGA3_SOLBU Putative disease resistance protein RGA3 OS=Solanum bulbocastanum GN=RGA3 PE=2 SV=2

 Score = 61.6 bits (148), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 62/210 (29%), Positives = 105/210 (50%), Gaps = 16/210 (7%)

Query: 125 PSLKRLDISHCDNIRTLTVEDGIQSSSRRYTSYLLEKLEIWDCPSLT--CIFSKNELPAT 182
           PSL++L I    N++ L    G +         +LE+++I DCP      + S  +L   
Sbjct: 788 PSLRKLHIGGFCNLKGLQRMKGAEQFP------VLEEMKISDCPMFVFPTLSSVKKLEIW 841

Query: 183 LESLEVG----NQPPSLKSLNVWSCSKLESIAERLDNN-TSLEMISILWCENLKFLPSGL 237
            E+   G    +   +L SL ++S   + S+ E +  N  +L  +S+ + ENLK LP+ L
Sbjct: 842 GEADAGGLSSISNLSTLTSLKIFSNHTVTSLLEEMFKNLENLIYLSVSFLENLKELPTSL 901

Query: 238 HNLRQLQEIQLWGCENLVSFPEGGLP-CAKLSKLGIYRCERLEALPKGLHNLKSLKKLRI 296
            +L  L+ + +  C  L S PE GL   + L++L +  C  L+ LP+GL +L +L  L+I
Sbjct: 902 ASLNNLKCLDIRYCYALESLPEEGLEGLSSLTELFVEHCNMLKCLPEGLQHLTTLTSLKI 961

Query: 297 GG--KLPSLEEDGLPTNLHFLKIERNMEIW 324
            G  +L    E G+  + H +    N+ I+
Sbjct: 962 RGCPQLIKRCEKGIGEDWHKISHIPNVNIY 991

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system which restricts the pathogen growth.

Solanum bulbocastanum (taxid: 147425)

>sp|O23530|SNC1_ARATH Protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1 OS=Arabidopsis thaliana GN=SNC1 PE=1 SV=3

 Score = 61.2 bits (147), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 75/273 (27%), Positives = 127/273 (46%), Gaps = 23/273 (8%)

Query: 34  LILRYCKGLVKLPQSSLSLSSLREIEICRCHSLVSFPEVALPSKLKKIEIRECDALKSLP 93
           LI++Y K L KL + +L L SL+E+ +   ++L   P+++L   L+++++  C +L +LP
Sbjct: 595 LIMKYSK-LEKLWEGTLPLGSLKEMNLRYSNNLKEIPDLSLAINLEELDLVGCKSLVTLP 653

Query: 94  EAWMCGTNSSLEILKIWSCHSLPYIARVQLPPSLKRLDISHCDNIRTL-TVEDGIQSSSR 152
            +    T   L  L +  C  L          SL+ L+++ C N+R    ++ G      
Sbjct: 654 SSIQNATK--LIYLDMSDCKKLESFPTDLNLESLEYLNLTGCPNLRNFPAIKMGCSDVDF 711

Query: 153 RYTSYLLEKLEIWDCPSLTCIFSKNELPATLESLEVGN-------QPPSLKSLNVWSCSK 205
                   ++ + DC      F    LPA L+ L+          +P  L  LNV    K
Sbjct: 712 PEGR---NEIVVEDC------FWNKNLPAGLDYLDCLTRCMPCEFRPEQLAFLNVRG-YK 761

Query: 206 LESIAERLDNNTSLEMISILWCENLKFLPSGLHNLRQLQEIQLWGCENLVSFPEGGLPCA 265
            E + E + +  SLE + +   ENL  +P  L    +L+ + L  C++LV+ P       
Sbjct: 762 HEKLWEGIQSLGSLEGMDLSESENLTEIPD-LSKATKLESLILNNCKSLVTLPSTIGNLH 820

Query: 266 KLSKLGIYRCERLEALPKGLHNLKSLKKLRIGG 298
           +L +L +  C  LE LP  + NL SL+ L + G
Sbjct: 821 RLVRLEMKECTGLEVLPTDV-NLSSLETLDLSG 852

Disease resistance protein of the TIR-NB-LRR-type. Part of the RPP5 locus that contains a cluster of several paralogous disease resistance (R) genes. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. Regulated by RNA silencing. Expression regulated by MOS1 at chromatin level. Negatively regulated at the transcript level by BON1.

Arabidopsis thaliana (taxid: 3702)

>sp|Q7XBQ9|RGA2_SOLBU Disease resistance protein RGA2 OS=Solanum bulbocastanum GN=RGA2 PE=1 SV=1

 Score = 58.5 bits (140), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 69/240 (28%), Positives = 116/240 (48%), Gaps = 29/240 (12%)

Query: 89  LKSLPEAWMCGTNSSLEILKIWSCHSLPYIARVQLPPSLKRLDISHCDNIRTLTVEDGIQ 148
           L+SL   W       +E + I   HS  +  R++ P SL++LDI    +++ L  ++G +
Sbjct: 755 LESLELHWGSADVEYVEEVDI-DVHS-GFPTRIRFP-SLRKLDIWDFGSLKGLLKKEGEE 811

Query: 149 SSSRRYTSYLLEKLEIWDCPSLTCIFSKNELPATLESLEVGNQPPSLKSLNVWSCSKLES 208
                    +LE++ I +CP LT       L + L +L          SL +       S
Sbjct: 812 QFP------VLEEMIIHECPFLT-------LSSNLRAL---------TSLRICYNKVATS 849

Query: 209 IAERLDNN-TSLEMISILWCENLKFLPSGLHNLRQLQEIQLWGCENLVSFPEGGL-PCAK 266
             E +  N  +L+ ++I  C NLK LP+ L +L  L+ +++  C  L S PE GL   + 
Sbjct: 850 FPEEMFKNLANLKYLTISRCNNLKELPTSLASLNALKSLKIQLCCALESLPEEGLEGLSS 909

Query: 267 LSKLGIYRCERLEALPKGLHNLKSLKKLRIGG--KLPSLEEDGLPTNLHFLKIERNMEIW 324
           L++L +  C  L+ LP+GL +L +L  L+I G  +L    E G+  + H +    N+ I+
Sbjct: 910 LTELFVEHCNMLKCLPEGLQHLTTLTSLKIRGCPQLIKRCEKGIGEDWHKISHIPNVNIY 969

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system which restricts the pathogen growth. Confers a broad resistance to all known races of P.infestans.

Solanum bulbocastanum (taxid: 147425)

>sp|Q9LVT1|DRL39_ARATH Putative disease resistance protein At5g47280 OS=Arabidopsis thaliana GN=At5g47280 PE=3 SV=1

 Score = 53.9 bits (128), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 32/110 (29%), Positives = 56/110 (50%)

Query: 185 SLEVGNQPPSLKSLNVWSCSKLESIAERLDNNTSLEMISILWCENLKFLPSGLHNLRQLQ 244
           ++++    P L  + +  C  L  +   +   TSL  ISI  C N+K LP  +  L+ LQ
Sbjct: 455 AIDIAQIFPKLTDITIDYCDDLAELPSTICGITSLNSISITNCPNIKELPKNISKLQALQ 514

Query: 245 EIQLWGCENLVSFPEGGLPCAKLSKLGIYRCERLEALPKGLHNLKSLKKL 294
            ++L+ C  L S P       +L  + I  C  L +LP+ + N+++L+K+
Sbjct: 515 LLRLYACPELKSLPVEICELPRLVYVDISHCLSLSSLPEKIGNVRTLEKI 564

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LZ25|DRL30_ARATH Probable disease resistance protein At5g04720 OS=Arabidopsis thaliana GN=At5g04720 PE=2 SV=1

 Score = 53.5 bits (127), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 38/125 (30%), Positives = 59/125 (47%)

Query: 170 LTCIFSKNELPATLESLEVGNQPPSLKSLNVWSCSKLESIAERLDNNTSLEMISILWCEN 229
           L+ IF K         L++    P L  L +  C  L  +   +   TSL  ISI  C  
Sbjct: 628 LSLIFCKINTSLDQTELDIAQIFPKLSDLTIDHCDDLLELPSTICGITSLNSISITNCPR 687

Query: 230 LKFLPSGLHNLRQLQEIQLWGCENLVSFPEGGLPCAKLSKLGIYRCERLEALPKGLHNLK 289
           +K LP  L  L+ LQ ++L+ C  L S P       +L  + I +C  L +LP+ +  +K
Sbjct: 688 IKELPKNLSKLKALQLLRLYACHELNSLPVEICELPRLKYVDISQCVSLSSLPEKIGKVK 747

Query: 290 SLKKL 294
           +L+K+
Sbjct: 748 TLEKI 752

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FKZ0|DRL43_ARATH Probable disease resistance protein At5g66910 OS=Arabidopsis thaliana GN=At5g66910 PE=2 SV=1

 Score = 51.6 bits (122), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/100 (38%), Positives = 55/100 (55%), Gaps = 4/100 (4%)

Query: 49  SLSLSSLREIEICRCHSLVSFPE-VALPSKLKKIEIRECDALKSLPEAWMCGTNSSLEIL 107
           S +LS+L+EI+I  C+ L   P  +     LK + I  C+ L  LPEA   G  S LE+L
Sbjct: 651 SKALSNLQEIDIDYCYDLDELPYWIPEVVSLKTLSITNCNKLSQLPEA--IGNLSRLEVL 708

Query: 108 KIWSCHSLPYIARV-QLPPSLKRLDISHCDNIRTLTVEDG 146
           ++ SC +L  +    +   +L+ LDISHC  +R L  E G
Sbjct: 709 RMCSCMNLSELPEATERLSNLRSLDISHCLGLRKLPQEIG 748

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|P26337|ESA8C_TRYEQ Putative adenylate cyclase regulatory protein OS=Trypanosoma equiperdum GN=ESAG8C PE=2 SV=1

 Score = 50.1 bits (118), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 64/250 (25%), Positives = 110/250 (44%), Gaps = 12/250 (4%)

Query: 52  LSSLREIEICRCHSLVSFPEVALPSKLKKIEIRECDALKSLPEAWMCGTNSSLEILKIWS 111
           L +L ++ +  CH + S   VA  S LK+++I  C++L            ++LE+L +  
Sbjct: 346 LVNLDKLNLSGCHGVSSLGFVANLSNLKELDISGCESLVCFDGLQ---DLNNLEVLYLRD 402

Query: 112 CHSLPYIARVQLPPSLKRLDISHCDNIRTLT---VEDGIQSSSRRYTSYLLEKLEIWDCP 168
             S   +  ++    ++ LD+S C+ I +L+      G++  S      ++    IW   
Sbjct: 403 VKSFTNVGAIKNLSKMRELDLSGCERITSLSGLETLKGLEELSLEGCGEIMSFDPIWSLH 462

Query: 169 SLTCIFSKNELPATLESLEVGNQPPSLKSLNVWSCSKLESIAERLDNNTSLEMISILWCE 228
            L  ++        LE L        L+ L +  C K  +    + N  ++ ++ +  CE
Sbjct: 463 HLRVLYVSE--CGNLEDLSGLEGITGLEELYLHGCRKCTNFGP-IWNLRNVCVVELSCCE 519

Query: 229 NLKFLPSGLHNLRQLQEIQLWGCENLVSFPEGGLPCAKLSKLGIYRCERLEALPKGLHNL 288
           NL+ L SGL  L  L+E+ L GCE +      G     L  L    C  L+ L  GL  L
Sbjct: 520 NLEDL-SGLQCLTGLEELYLIGCEEITPIGVVG-NLRNLKCLSTCWCANLKELG-GLDRL 576

Query: 289 KSLKKLRIGG 298
            +L+KL + G
Sbjct: 577 VNLEKLDLSG 586

May be involved in the postranscriptional regulation of genes in VSG expression sites.

Trypanosoma equiperdum (taxid: 5694)

>sp|P0CB16|DRL25_ARATH Putative disease resistance protein At4g19050 OS=Arabidopsis thaliana GN=At4g19050 PE=3 SV=2

 Score = 49.7 bits (117), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 75/268 (27%), Positives = 122/268 (45%), Gaps = 33/268 (12%)

Query: 31  LEYLILRYCKGLVKLPQSSLSLSSLREIEICRCHSLVSFPEVALPSKLKKIEIRECDALK 90
           L  L+LR C  L +LPQ    L++L+ ++ C    LV   EV L    +K E+R  D  K
Sbjct: 633 LTRLLLRNCTRLKRLPQLR-PLTNLQILDACGATDLVEMLEVCLE---EKKELRILDMSK 688

Query: 91  -SLPE-AWMCGTNSSLEILKIWSCHSLPYIARVQLPPSLKRLDISHCDNIRTLTVEDGIQ 148
            SLPE A       +L  L + +C  +  +  ++    L+  D+S C  ++ +       
Sbjct: 689 TSLPELADTIADVVNLNKLLLRNCSLIEELPSIEKLTHLEVFDVSGCIKLKNI------- 741

Query: 149 SSSRRYTSYLLEKLEIWDCPSLTCIFSKNELPATLESLEVGNQPPSLKSLNVWSCSKLES 208
           + S    SYL E + + +        + +ELP  +  L       +LK L +  CSKL++
Sbjct: 742 NGSFGEMSYLHE-VNLSET-------NLSELPDKISEL------SNLKELIIRKCSKLKT 787

Query: 209 IAERLDNNTSLEMISILWCENLKFLPSGLHNLRQLQEIQLWGCENLVSFPEGGLPCAKLS 268
           +   L+  T+LE+  +  C  L+ +     NL  L ++ L    NL   P      + L 
Sbjct: 788 LP-NLEKLTNLEIFDVSGCTELETIEGSFENLSCLHKVNLSET-NLGELPNKISELSNLK 845

Query: 269 KLGIYRCERLEALPKGLHNLKSLKKLRI 296
           +L +  C +L+ALP    NL+ L  L I
Sbjct: 846 ELILRNCSKLKALP----NLEKLTHLVI 869

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	461
224132254	552	predicted protein [Populus trichocarpa]	0.958	0.800	0.414	1e-73
356554923	1399	PREDICTED: putative disease resistance R	0.813	0.268	0.443	8e-69
284026888	1424	CC-NBS-LRR protein [Quercus suber]	0.885	0.286	0.408	9e-67
45826061	739	resistance protein [Quercus suber]	0.850	0.530	0.410	7e-64
147825318	1824	hypothetical protein VITISV_003723 [Viti	0.793	0.200	0.373	1e-52
400131587	1388	FB_MR5 [Malus x robusta]	0.819	0.272	0.363	4e-52
359487255	1336	PREDICTED: putative disease resistance p	0.804	0.277	0.365	6e-52
147777746	1199	hypothetical protein VITISV_010202 [Viti	0.804	0.309	0.363	1e-51
359487225	1373	PREDICTED: putative disease resistance R	0.908	0.305	0.348	1e-49
225449649	1418	PREDICTED: putative disease resistance p	0.882	0.287	0.365	1e-49

>gi|224132254|ref|XP_002328223.1| predicted protein [Populus trichocarpa] gi|222837738|gb|EEE76103.1| predicted protein [Populus trichocarpa]

 Score =  283 bits (725), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 203/490 (41%), Positives = 281/490 (57%), Gaps = 48/490 (9%)

Query: 1   LTIDSCPKLQSLV-AEEEKDQQQQLCELSCRLEYLILRYCKGLVKLPQSSLSLSSLREIE 59
           L + +CP++ SL+  E     QQQL   +C+LE L    C+ L KLPQ   SL SL+E++
Sbjct: 76  LEVRNCPQVVSLMEGEVPVYMQQQLA--NCKLESLTFSTCESLKKLPQWVHSLVSLKELK 133

Query: 60  ICRCHSLVSFPEVALPSKLKKIEIRECDALKSLPEA----WMCGTNSSLEILKIWSCHSL 115
           I  C  L+SFPE  LPS L+ IEI  C+AL  LP A     MC     LE L+I +C SL
Sbjct: 134 IQYCPRLLSFPEAGLPSTLRIIEIVGCNALTPLPAAVTYNMMC-----LEQLRIENCESL 188

Query: 116 PYIARVQLPPSLKRLDISHCDNIRTLTVEDGIQSSSRRY---------TSYLLEKLEIWD 166
               R+QLPP+LK+L+I +C+N+  L ++DG  SSS++           S LLE L +  
Sbjct: 189 ISFGRIQLPPTLKKLEIRYCENLLCL-LDDGEGSSSKKSDENTSCSGNNSSLLEYLYVGI 247

Query: 167 CPSLTCIFSKNELPATLESLEVGNQ------------PPSLKSLNVWSCSKLESIAERLD 214
           C SLT I    ELP+ L+ L+V +             P  LK L + SC  LES+ +R  
Sbjct: 248 CNSLTSI---GELPSALKYLQVCSCSKLKSLSSRDKLPAGLKHLAIDSCENLESMPDRFQ 304

Query: 215 NNTSLEMISILWCENLKFLPSGLHNLRQLQEIQLWGCENLVSFPEGGLPCAKLSKLGIYR 274
           +N SLE + I +C NL+ LP GLH L  L+EI +W C  LVSF   GLP   L +L I +
Sbjct: 305 DNMSLENLKIWFCFNLRSLPEGLHKLCHLREISIWYCPALVSFAAEGLP-INLRRLFIIK 363

Query: 275 CERLEALPKGLHNLKSLKKLRIG--GKLPSLEEDGLPTNLHFLKIERNMEIWKSMIERGF 332
           C+ L+A+P  +HNL SL++L I     + S  E+G PT+L +L    +++I + +   G 
Sbjct: 364 CDGLKAIPDHMHNLMSLEELSIYYCPDIVSFPEEGFPTSLTYLA-TVDLKICELLFNWGM 422

Query: 333 HKFSSLRHLTIEGCDDDMVSFPPEDRRLGTTLPLPASLASLTIGDFPNLERLS-SSIVDL 391
           HK S+LR L I+G     +SFP  D      + LP++L  L+I DFPNLE LS S   +L
Sbjct: 423 HKLSALRTLIIQG-GFSHISFPSVD----MGVRLPSALNRLSIEDFPNLEYLSYSGFQNL 477

Query: 392 QNLKYLKLYDCPKLKYFSEKGLPSSLLRLYIDECPLIEEKCRKDGEQYWDLLTHIPRVRI 451
            +L+ L + DCPKL  F  KGLPSSLL L I  CPL+ ++ +   ++ W  + HIP + I
Sbjct: 478 SSLERLSISDCPKLTSFPGKGLPSSLLELRIRACPLLVQQIKGRVKE-WLKIRHIPYINI 536

Query: 452 HLPVVFDDST 461
              VV D +T
Sbjct: 537 DGKVVSDPAT 546

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356554923|ref|XP_003545790.1| PREDICTED: putative disease resistance RPP13-like protein 1-like [Glycine max]

 Score =  267 bits (683), Expect = 8e-69,   Method: Compositional matrix adjust.
 Identities = 183/413 (44%), Positives = 244/413 (59%), Gaps = 38/413 (9%)

Query: 73   ALPSKLKKIEIRECDALKSLPEAWMCGTNSSLEILKIWSCHSLPYIARVQLPPSLKRLDI 132
             L S L+ IEIR C+ +KS+P+  M  ++  LE L I  C S+ ++   QLP SLK L+I
Sbjct: 993  GLSSILRLIEIRNCNIMKSIPKVLMVNSHF-LERLYICHCDSIVFVTMDQLPHSLKSLEI 1051

Query: 133  SHCDNIRTLTVEDGIQSSSR--------RYTSYLLEKLE---IWDCPSLTCIFSKNELPA 181
            S+C N+R L +++G  +SS         ++ S ++  LE   I  CPSLTCI    ELP 
Sbjct: 1052 SNCKNLRCL-LDNGTCTSSSIIMHDDNVQHGSTIISHLEYVYIGWCPSLTCISRSGELPE 1110

Query: 182  TLESLEV------------GNQPPSLKSLNVWSCSKLESIAERLDNNTSLEMISILWCEN 229
            +++ L +            G  P S++ L + SC KLESIA RL  NTSLE I I  CEN
Sbjct: 1111 SVKHLFIWNCSELSCLSMKGQLPKSIERLEIQSCPKLESIANRLHRNTSLESIQIWNCEN 1170

Query: 230  LKFLPSGLHNLRQLQEIQLWGCENLVSFPEGGLPCAKLSKLGIYRCERLEALPKGLHNLK 289
            LK LP GLH L  L+EI++ GC NLVSFPE GLP + LS+L I  CE+L ALP  ++NL 
Sbjct: 1171 LKSLPEGLHFLVNLKEIKIIGCPNLVSFPEEGLPASSLSELSIMSCEKLVALPNSMYNLD 1230

Query: 290  SLKKLRIGGKLPSLE---EDGLPTNLHFLKIERNMEIWKSMIERGFHKFSSLRHLTIEGC 346
            SLK+L I G  PS++   E   P NL  L I  +    ++M   G +K S LR LTI G 
Sbjct: 1231 SLKELEI-GYCPSIQYFPEINFPDNLTSLWI-NDHNACEAMFNWGLYKLSFLRDLTIIGG 1288

Query: 347  DDDMVSFPPEDRRLGTTLPLPASLASLTIGDFPNLERLSS-SIVDLQNLKYLKLYDCPKL 405
            +  M   P E  +LGT   LP++L SLT+  FP+LE LSS     L +L  L +Y+CPKL
Sbjct: 1289 NLFM---PLE--KLGTM--LPSTLTSLTVQGFPHLENLSSEGFHKLTSLSKLSIYNCPKL 1341

Query: 406  KYFSEKGLPSSLLRLYIDECPLIEEKCRKDGEQYWDLLTHIPRVRIHLPVVFD 458
                EKGLPSSLL LYI +CP ++E+CRKD  + W  +  +P V I    ++D
Sbjct: 1342 LCLPEKGLPSSLLELYIQDCPFLKEQCRKDKGRDWLKIADVPYVEIDGKFIYD 1394

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|284026888|gb|ADB66335.1| CC-NBS-LRR protein [Quercus suber]

 Score =  260 bits (665), Expect = 9e-67,   Method: Compositional matrix adjust.
 Identities = 184/450 (40%), Positives = 249/450 (55%), Gaps = 42/450 (9%)

Query: 44   KLPQSSLSLSSLREIEICRCHSLVSFPEVALPSKLKKIEIRECDALKSL-PEAWMCGT-N 101
            K+P+    L  LRE+ I  C +LVSFP    PS LK I+I+ C  LKSL PE  +    N
Sbjct: 975  KIPEGLHRLKFLRELSIEDCPTLVSFPASGFPSMLKVIQIKSCSGLKSLLPEGTLHSREN 1034

Query: 102  SSLEILKIWSCHSLPYIARVQLPPSLKRLDISHCDNIRTL------------TVEDGIQS 149
            + LE L +  C S+  IAR QLP +LK+L+ISHC N++ +              ++ I +
Sbjct: 1035 ACLERLCVVRCDSMKSIARGQLPTTLKKLEISHCMNLQCVLDEGEGSSSSSGMHDEDINN 1094

Query: 150  SSRRYTSYLLEKLEIWDCPSLTCIFSKNELPATLESL------------EVGNQPPSLKS 197
             S+ +  YL    +I  CPSLT + S  +LPATL  L              G  P +L+ 
Sbjct: 1095 RSKTHLQYL----DIKSCPSLTTLTSSGKLPATLTHLLLRECPKLMCLSSTGKLPAALQY 1150

Query: 198  LNVWSCSKLESIAERLDNNTSLEMISILWCENLKFLPSGLHNLRQLQEIQLWGCENLVSF 257
            L + S SKL+ IAERL  NTSLE I I  C  LK LP  LHNL +L++  ++ C++  SF
Sbjct: 1151 LEIQSISKLQKIAERLHQNTSLECIKIWNCHGLKSLPEDLHNLSKLRQFLIFWCQSFSSF 1210

Query: 258  PEGGLPCAKLSKLGIYRCERLEALPKGLHNLKSLKKLRIGGKLPSL--EEDGLPTNLHFL 315
            P  GLP + L  LGI  C+ L+ALP G+ NL SL+KL I  +L SL   ++GLPTNL   
Sbjct: 1211 PAAGLP-SNLRVLGIKNCKNLKALPNGMRNLTSLQKLDISHRLDSLPSPQEGLPTNL--- 1266

Query: 316  KIERNM---EIWKSMIERGFHKFSSLRHLTIEGCDDDMVSFPPEDRRLGTTLPLPASLAS 372
             IE NM   + +K M E G  + +SL  L+I G   D+ S+P E R  G  + LP SL+ 
Sbjct: 1267 -IELNMHDLKFYKPMFEWGLQQPTSLIKLSIHGECLDVDSYPGE-RENGVMMLLPNSLSI 1324

Query: 373  LTIGDFPNLERLS-SSIVDLQNLKYLKLYDCPKLKYFSEKGLPSSLLRLYIDECPLIEEK 431
            L I  F NLE LS     +L +L  LK+Y+C KL    ++GLP SL +L I  CPL+ + 
Sbjct: 1325 LCISYFQNLECLSPKGFQNLTSLNQLKIYNCLKLTSLPKEGLPPSLTQLEIRNCPLLSQH 1384

Query: 432  CRKDGEQYWDLLTHIPRVRIHLPVVFDDST 461
            C  +  Q W  + HIP V I    + +  T
Sbjct: 1385 CNNEKGQEWSKIAHIPCVLIDNKFIHETVT 1414

Source: Quercus suber

Species: Quercus suber

Genus: Quercus

Family: Fagaceae

Order: Fagales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|45826061|gb|AAS77675.1| resistance protein [Quercus suber]

 Score =  251 bits (640), Expect = 7e-64,   Method: Compositional matrix adjust.
 Identities = 178/434 (41%), Positives = 238/434 (54%), Gaps = 42/434 (9%)

Query: 44  KLPQSSLSLSSLREIEICRCHSLVSFPEVALPSKLKKIEIRECDALKSL-PEAWMCG-TN 101
           K+P+    L  LRE+ I  C +LVSFP    PS LK I+I+ C  LKSL PE  +    N
Sbjct: 316 KIPEGLHRLKFLRELSIEDCPTLVSFPASGFPSMLKVIQIKSCSGLKSLLPEGTLHSREN 375

Query: 102 SSLEILKIWSCHSLPYIARVQLPPSLKRLDISHCDNIR------------TLTVEDGIQS 149
           + L  L +  C S+  IAR QLP +LKRL+ISHC N++            ++  ++ I +
Sbjct: 376 ACLVRLCVVRCDSMKSIARGQLPTTLKRLEISHCMNLQCALDEGEGSSSSSVMHDEDINN 435

Query: 150 SSRRYTSYLLEKLEIWDCPSLTCIFSKNELPATLESL------------EVGNQPPSLKS 197
            S+ +  YL    +I  CPSLT + S  +LPATL  L              G  P +L+ 
Sbjct: 436 RSKTHLQYL----DIKSCPSLTTLTSSGKLPATLTHLLLRECPKLMCLSSTGKLPAALQY 491

Query: 198 LNVWSCSKLESIAERLDNNTSLEMISILWCENLKFLPSGLHNLRQLQEIQLWGCENLVSF 257
           L + S  KL+ IAERL  NT LE I I  C  LK LP  LHNL +L++ Q+  C +  SF
Sbjct: 492 LEIQSIPKLQKIAERLHQNTFLECIKIWNCHGLKSLPEDLHNLSKLRQFQIVWCTSFSSF 551

Query: 258 PEGGLPCAKLSKLGIYRCERLEALPKGLHNLKSLKKLRIGGKLPSL--EEDGLPTNLHFL 315
           P  GLP +    LGI  C+ L+ALP G+ NL SL+KL I  +L SL   ++GLPTNL   
Sbjct: 552 PAAGLP-SNPRVLGIKNCKNLKALPNGMRNLTSLQKLDISNRLDSLPSPQEGLPTNL--- 607

Query: 316 KIERNM---EIWKSMIERGFHKFSSLRHLTIEGCDDDMVSFPPEDRRLGTTLPLPASLAS 372
            IE NM   + +K M E G  + +SL  L+I G   D+ SFP E R  G  + LP SL+ 
Sbjct: 608 -IELNMIDLKFYKPMFEWGLQQLTSLIKLSIHGECLDVDSFPGE-RENGAMMLLPNSLSI 665

Query: 373 LTIGDFPNLERLS-SSIVDLQNLKYLKLYDCPKLKYFSEKGLPSSLLRLYIDECPLIEEK 431
           L I  F NLE LS     +L +L  LK+Y+C KL    ++GLP SL +L I  CPL+ + 
Sbjct: 666 LCISYFQNLECLSPKGFQNLTSLNQLKIYNCLKLTSLPKEGLPPSLTQLEIRNCPLLSQH 725

Query: 432 CRKDGEQYWDLLTH 445
           C  +  Q W  + H
Sbjct: 726 CNNEKGQEWSKIAH 739

Source: Quercus suber

Species: Quercus suber

Genus: Quercus

Family: Fagaceae

Order: Fagales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147825318|emb|CAN73260.1| hypothetical protein VITISV_003723 [Vitis vinifera]

 Score =  214 bits (544), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 159/426 (37%), Positives = 233/426 (54%), Gaps = 60/426 (14%)

Query: 34   LILRYCKGLVKLPQSSLSLSSLREIEICRCHSLVSFPEVALPSKLKKIEIRECDALKSLP 93
            L +R+C  L ++P    SL+SL+ + I  C SL SFPE+ALP  L+ +EIR C  L+SLP
Sbjct: 958  LSVRFCPELKEIPPILHSLTSLKNLNIENCESLASFPEMALPPMLESLEIRGCPTLESLP 1017

Query: 94   EAWMCGTNSSLEILKIWSCHSLPYIARVQLPPSLKRLDISHCDNIRTLTVEDGIQSSSRR 153
            E  M   N++L++L I +C SL  + R          DI   D+++TL +          
Sbjct: 1018 EG-MMQNNTTLQLLVIGACGSLRSLPR----------DI---DSLKTLAI---------- 1053

Query: 154  YTSYLLEKLEIWDCPSLTCIFSKNELPATLESLEVGNQPPSLKSLNVWSCSKLESIAERL 213
               Y  +KLE+    +L    + N   A+L   E+     S  S  + S +KLE      
Sbjct: 1054 ---YACKKLEL----ALHEDMTHNHY-ASLTKFEITGSFDSFTSFPLASFTKLE------ 1099

Query: 214  DNNTSLEMISILWCENLK--FLPSGLH--NLRQLQEIQLWGCENLVSFPEGGLPCAKLSK 269
                    + I+ C NL+  ++P GLH  +L  LQ +++W C NLVSFP GGLP   L K
Sbjct: 1100 -------YLRIINCGNLESLYIPDGLHHVDLTSLQSLEIWECPNLVSFPRGGLPTPNLRK 1152

Query: 270  LGIYRCERLEALPKGLHN-LKSLKKLRIGG--KLPSLEEDGLPTNLHFLKIERNMEIWKS 326
            L I+ CE+L++LP+G+H  L SL  LRI    ++ S  E GLPTNL  L I    ++   
Sbjct: 1153 LWIWNCEKLKSLPQGMHALLTSLHYLRIKDCPEIDSFPEGGLPTNLSDLHIMNCNKLMAC 1212

Query: 327  MIERGFHKFSSLRHLTIEGCDDDMVSFPPEDRRLGTTLPLPASLASLTIGDFPNLERLSS 386
             +E        LR L IEG ++ M SFP E         LP++L SL I +F NL+ L +
Sbjct: 1213 RMEWRLQTLPFLRKLEIEGLEERMESFPEERF-------LPSTLTSLIIDNFANLKSLDN 1265

Query: 387  SIVD-LQNLKYLKLYDCPKLKYFSEKGLPSSLLRLYIDECPLIEEKCRKDGEQYWDLLTH 445
              ++ L +L+ L +YDC KL+   ++GLPSSL RL I +CPL+E++C++D  + W  ++H
Sbjct: 1266 KGLEHLTSLETLSIYDCEKLESLPKQGLPSSLSRLSIRKCPLLEKRCQRDKGKKWPNISH 1325

Query: 446  IPRVRI 451
            IP + I
Sbjct: 1326 IPCIVI 1331

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|400131587|emb|CCH50986.1| FB_MR5 [Malus x robusta]

 Score =  212 bits (539), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 167/460 (36%), Positives = 244/460 (53%), Gaps = 82/460 (17%)

Query: 10   QSLVAEE---EKDQQQQLCELSCRLEYLILRYCKGLVKLPQSSLSLSSLREIEICRCHSL 66
             SL+ EE   E D+  QL  L C+LE+L L+ CK L+KLP+    LSSL+E+ I  C SL
Sbjct: 998  NSLLVEELGKEADELLQLQILGCKLEFLKLKKCKNLLKLPEGLNQLSSLQELRIHECSSL 1057

Query: 67   VSFPEVALPSKLKKIEIRECDALKSLPEAWMCGTNSSLEILKIWSCHSLPYIARVQLPPS 126
            VSFP+V LP  LK IEI EC                          HSL Y A+ Q+P +
Sbjct: 1058 VSFPDVGLPPSLKDIEITEC--------------------------HSLIYFAKSQIPQN 1091

Query: 127  LKRLDISHCDNIRTLTVEDGIQSSSRRYTSYLLEKLEIWDCPSLTCIFSKNELPATLESL 186
            L+R+ I  C ++R+L   + + S S   +   LE L I  C SLT +   ++L       
Sbjct: 1092 LRRIQIRDCRSLRSLVDNEAVGSCSSS-SHNCLEYLNIERCQSLTLLSLSDQLVR----- 1145

Query: 187  EVGNQPPSLKSLNVWSCSKLESIAERLDNNTSLEMISILWCENLKFLPSGLHNLRQLQEI 246
                   +L+ L+++ C +LE +A              L+C N  +          L+  
Sbjct: 1146 -------ALRELDIYDCEQLEFLAP-----------DGLFCNNTNYF---------LENF 1178

Query: 247  QLWGCENLVSFPE--GGLPCAKLSKLGIYRCERLEALPKGLHNLKSLKKLRIGGKLPSLE 304
            ++  C+NL S P   GG+  + L ++ I  C+RLEALP+ +HN  SL+KL I  +     
Sbjct: 1179 RIRRCQNLKSLPRLSGGIRGSNLREIRITDCDRLEALPEDMHNFNSLEKLIIDYR----- 1233

Query: 305  EDGL----PTNLHFL---KIERNMEIWKSMIERGFHKFSSLRHLTIEGCDDDMVSFPPED 357
             +GL    P NL  L   K++    +W+  +E G H+ +SLR+L I G D DMVSFPP+ 
Sbjct: 1234 -EGLTCSFPANLTSLMIWKVKSCKSLWE--LEWGLHRLTSLRYLWIGGEDPDMVSFPPDM 1290

Query: 358  RRLGTTLPLPASLASLTIGDFPNLERLSSSIVD-LQNLKYLKLYDCPKLKYFSEKGLPSS 416
             R+ T LP   SL  L+IG FPNL++LSS     L +L+ L+L+DCPKL    ++GLP S
Sbjct: 1291 VRMETLLP--KSLTELSIGGFPNLKKLSSKGFQFLTSLESLELWDCPKLASIPKEGLPLS 1348

Query: 417  LLRLYIDECPLIEEKCRKDGEQYWDLLTHIPRVRIHLPVV 456
            L  L I  CP+++E+C+    +YW  ++HIP + I   ++
Sbjct: 1349 LTELCIYGCPVLKERCQPGKGRYWHKISHIPYIDIDWKMI 1388

Source: Malus x robusta

Species: Malus x robusta

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359487255|ref|XP_002269744.2| PREDICTED: putative disease resistance protein At3g14460 [Vitis vinifera]

 Score =  211 bits (537), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 158/432 (36%), Positives = 232/432 (53%), Gaps = 61/432 (14%)

Query: 23   QLCELSCRLEYLILRYCKGLVKLPQSSLSLSSLREIEICRCHSLVSFPEVALPSKLKKIE 82
            +L +L+  ++  + R C  L ++P    SL+SL+ + I  C SL SFPE+ALP  L+ +E
Sbjct: 942  ELGQLNSLVQLCVYR-CPELKEIPPILHSLTSLKNLNIENCESLASFPEMALPPMLESLE 1000

Query: 83   IRECDALKSLPEAWMCGTNSSLEILKIWSCHSLPYIARVQLPPSLKRLDISHCDNIRTLT 142
            IR C  L+SLPE  M   N++L+ L+IW C SL  + R     SLKRL I  C  +    
Sbjct: 1001 IRACPTLESLPEGMM-QNNTTLQCLEIWHCGSLRSLPRD--IDSLKRLVICECKKLELAL 1057

Query: 143  VEDGIQSSSRRYTSYLLEKLEIWDCPSLTCIFSKNELP-ATLESLEVGNQPPSLKSLNVW 201
             ED    +   Y S  L K +I      +C  S    P A+   LE         +L+ +
Sbjct: 1058 HED---MTHNHYAS--LTKFDI-----TSCCDSLTSFPLASFTKLE---------TLDFF 1098

Query: 202  SCSKLESIAERLDNNTSLEMISILWCENLKFLPSGLH--NLRQLQEIQLWGCENLVSFPE 259
            +C  LES+                      ++P GLH  +L  LQ +++  C NLVSFP 
Sbjct: 1099 NCGNLESL----------------------YIPDGLHHVDLTSLQSLEIRNCPNLVSFPR 1136

Query: 260  GGLPCAKLSKLGIYRCERLEALPKGLHNL-KSLKKLRIGG--KLPSLEEDGLPTNLHFLK 316
            GGLP   L +L I  CE+L++LP+G+H L  SL+ L I    ++ S  E GLPTNL  L 
Sbjct: 1137 GGLPTPNLRRLWILNCEKLKSLPQGMHTLLTSLQHLHISNCPEIDSFPEGGLPTNLSELD 1196

Query: 317  IERNMEIWKSMIERGFHKFSSLRHLTIEGCDDDMVSFPPEDRRLGTTLPLPASLASLTIG 376
            I    ++  + +E G      LR LTIEG +++     PE+R L      P++L SL I 
Sbjct: 1197 IRNCNKLVANQMEWGLQTLPFLRTLTIEGYENERF---PEERFL------PSTLTSLEIR 1247

Query: 377  DFPNLERLSS-SIVDLQNLKYLKLYDCPKLKYFSEKGLPSSLLRLYIDECPLIEEKCRKD 435
             FPNL+ L +  +  L +L+ L++ +C  LK F ++GLPSSL  LYI+ECPL+ ++C++D
Sbjct: 1248 GFPNLKSLDNKGLQHLTSLETLRIRECGNLKSFPKQGLPSSLSSLYIEECPLLNKRCQRD 1307

Query: 436  GEQYWDLLTHIP 447
              + W  ++HIP
Sbjct: 1308 KGKEWPKISHIP 1319

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147777746|emb|CAN60302.1| hypothetical protein VITISV_010202 [Vitis vinifera]

 Score =  210 bits (535), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 157/432 (36%), Positives = 232/432 (53%), Gaps = 61/432 (14%)

Query: 23   QLCELSCRLEYLILRYCKGLVKLPQSSLSLSSLREIEICRCHSLVSFPEVALPSKLKKIE 82
            +L +L+  ++  + R C  L ++P    SL+SL+ + I  C SL SFPE+ALP  L+ +E
Sbjct: 805  ELGQLNSLVQLCVYR-CPELKEIPPILHSLTSLKNLNIENCESLASFPEMALPPMLESLE 863

Query: 83   IRECDALKSLPEAWMCGTNSSLEILKIWSCHSLPYIARVQLPPSLKRLDISHCDNIRTLT 142
            IR C  L+SLPE  M   N++L+ L+IW C SL  + R     SLKRL I  C  +    
Sbjct: 864  IRACPTLESLPEGMM-QNNTTLQCLEIWHCGSLRSLPRDI--DSLKRLVICECKKLELAL 920

Query: 143  VEDGIQSSSRRYTSYLLEKLEIWDCPSLTCIFSKNELP-ATLESLEVGNQPPSLKSLNVW 201
             ED    +   Y S  L K +I      +C  S    P A+   LE         +L+ +
Sbjct: 921  HED---MTHNHYAS--LTKFDI-----TSCCDSLTSFPLASFTKLE---------TLDFF 961

Query: 202  SCSKLESIAERLDNNTSLEMISILWCENLKFLPSGLH--NLRQLQEIQLWGCENLVSFPE 259
            +C  LES+                      ++P GLH  +L  JQ +++  C NLVSFP 
Sbjct: 962  NCGNLESL----------------------YIPDGLHHVDLTSJQSLEIRNCPNLVSFPR 999

Query: 260  GGLPCAKLSKLGIYRCERLEALPKGLHNL-KSLKKLRIGG--KLPSLEEDGLPTNLHFLK 316
            GGLP   L +L I  CE+L++LP+G+H L  SL+ L I    ++ S  E GLPTNL  L 
Sbjct: 1000 GGLPTPNLRRLWILNCEKLKSLPQGMHTLLTSLQHLHISNCPEIDSFPEGGLPTNLSELD 1059

Query: 317  IERNMEIWKSMIERGFHKFSSLRHLTIEGCDDDMVSFPPEDRRLGTTLPLPASLASLTIG 376
            I    ++  + +E G      LR LTIEG +++     PE+R L      P++L SL I 
Sbjct: 1060 IRNCNKLVANQMEWGLQTLPFLRTLTIEGYENERF---PEERFL------PSTLTSLEIR 1110

Query: 377  DFPNLERLSS-SIVDLQNLKYLKLYDCPKLKYFSEKGLPSSLLRLYIDECPLIEEKCRKD 435
             FPNL+ L +  +  L +L+ L++ +C  LK F ++GLPSSL  LYI+ECPL+ ++C++D
Sbjct: 1111 GFPNLKSLDNKGLQHLTSLETLRIRECGNLKSFPKQGLPSSLSSLYIEECPLLNKRCQRD 1170

Query: 436  GEQYWDLLTHIP 447
              + W  ++HIP
Sbjct: 1171 KGKEWPKISHIP 1182

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359487225|ref|XP_002268551.2| PREDICTED: putative disease resistance RPP13-like protein 1-like [Vitis vinifera]

 Score =  204 bits (518), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 171/490 (34%), Positives = 240/490 (48%), Gaps = 71/490 (14%)

Query: 1    LTIDSCPKLQSLVAEEEKDQQQQLCELSCRLEYLILRYCKGLVKLPQSSLSLSSLREIEI 60
            L I  CP L    +      +Q+L    C L+ L +     L KLP    +L+ L +++I
Sbjct: 902  LDISCCPNLGFASSRFASLGEQRL---PCNLKMLRIHDDANLEKLPNGLQTLTCLEQLDI 958

Query: 61   CRCHSLVSFPEVALPSKLKKIEIRECDALKSLPEAWMCGTNSS-LEILKIWSCHSLPYIA 119
              C SL  FP   LP+ LK + I++C  L++LPE  M   ++  LE LKI  C  L    
Sbjct: 959  TGCPSLRCFPNCELPTTLKSLCIKDCKNLEALPEGMMHHDSTCCLEELKIEGCPRLESFP 1018

Query: 120  RVQLPPSLKRLDISHCDNIRTLTVEDGIQSSSRRYTSYLLEKLEIWDCPSLTCIFSKNEL 179
               LPP L+RL++S C          G++S    Y+S  LE LEI DCPSL C F   EL
Sbjct: 1019 DTGLPPLLRRLEVSECK---------GLKSLPHNYSSCALESLEISDCPSLRC-FPNGEL 1068

Query: 180  PATLESL---------------------------------------EVGNQPPSLKSLNV 200
            P TL+S+                                       + G  P +LK L +
Sbjct: 1069 PTTLKSIWIQDCENLESLPEGMMHHDSTCCLEEVIIMGCPRLESFPDTGELPSTLKKLEI 1128

Query: 201  WSCSKLESIAERL-DNNTSLEMISILWCENLKFLPSGLHNLRQLQEIQLWGCENLVSFPE 259
              C  LES++E +  NN++L+ + +    NLK LP  LH+L+ LQ I    CE L  FP 
Sbjct: 1129 CGCPDLESMSENMCPNNSALDNLVLEGYPNLKILPECLHSLKSLQIIN---CEGLECFPA 1185

Query: 260  GGLPCAKLSKLGIYRCERLEALPKGLHNLKSLKKLRI--GGKLPSLEEDGLPTNLHFLKI 317
             GL    L+ L I  CE L++LP  + +LKSL+ L I     + S  EDG+P NL  L+I
Sbjct: 1186 RGLSTPTLTSLRIEGCENLKSLPHQMRDLKSLRDLTILFCPGVESFPEDGMPPNLISLEI 1245

Query: 318  ERNMEIWKSMIERGFHKFSSLRHLTIEGCDDDMVSFPPEDRRLGTTLPLPASLASLTIGD 377
                 + K +    FH  +SL  LTIE    DMVSF  E+        LP SL SL I  
Sbjct: 1246 SYCENLKKPI--SAFHTLTSLFSLTIENVFPDMVSFRDEE------CLLPISLTSLRITA 1297

Query: 378  FPNLERLSSSIVDLQNLKYLKLYDCPKLKYFSEKGLPSSLLRLYIDECPLIEEKCRKDGE 437
              +L  LS  + +L +L+YL++  CP L   S   +P++L +L I  CP++EE+  K+  
Sbjct: 1298 MESLAYLS--LQNLISLQYLEVATCPNLG--SLGSMPATLEKLEIWCCPILEERYSKEKG 1353

Query: 438  QYWDLLTHIP 447
            +YW  + HIP
Sbjct: 1354 EYWPKIAHIP 1363

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225449649|ref|XP_002262753.1| PREDICTED: putative disease resistance protein At3g14460 [Vitis vinifera]

 Score =  203 bits (517), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 170/465 (36%), Positives = 245/465 (52%), Gaps = 58/465 (12%)

Query: 1    LTIDSCPKLQSLVAEEEKDQQQQLCELSCRLEYLILRYCKGLVKLPQSSLSLSSLREIEI 60
            L I  CPKL  L+AE++         L C LEYL +  C  L KLP    SL+SLRE+ I
Sbjct: 997  LVIVMCPKL-VLLAEDQP--------LPCNLEYLEINKCASLEKLPIGLQSLTSLRELSI 1047

Query: 61   CRCHSLVSFPEVALPSKLKKIEIRECDALKSLPEAWMC-GTNSS---LEILKIWSCHSLP 116
             +C  L S  E+  P  L  +E+ +C+ L+SLP+  M  G N +   LE LKI  C SL 
Sbjct: 1048 QKCPKLCSLAEMDFPPMLISLELYDCEGLESLPDGMMINGENRNFCLLECLKIVHCPSLI 1107

Query: 117  YIARVQLPPSLKRLDISHCDNIRTLTVEDGIQSSSRRYTSYLLEKLEIWDCPSLTCIFSK 176
               R +LP  LK L+I  C  +++L   +G+      +T + LE L I  CP L+  F +
Sbjct: 1108 CFPRGELPSKLKELEIIDCAKLQSLP--EGLILGD--HTCH-LEFLRIHRCPLLSS-FPR 1161

Query: 177  NELPATLESLEVGNQPPSLKSLNVWSCSKLESIAERLDNNTSLEMISILWCENLKFLPSG 236
              LP+T++ LE+ N            C +LESI+  L ++T+LE + I   + LK   SG
Sbjct: 1162 GLLPSTMKRLEIRN------------CKQLESIS-LLSHSTTLEYLRI---DRLKINFSG 1205

Query: 237  -LHNLRQLQEIQLWGCENLVSFPEGGLPCAKLSKLGIYRCERLEALPKGLHNLKSLKKLR 295
             LH+L+ L E+ ++ C  L SFPE G     L  L I  C+ L++LP  + +  SL+ LR
Sbjct: 1206 CLHSLKHLIELHIYSCSGLESFPERGFSSPNLKMLHIDDCKNLKSLPLQMQSFTSLRDLR 1265

Query: 296  IGG--KLPSLEEDGLPTNLHFLKIERNMEIWKSMIERGFHKFSSLRHLTIEG----CDDD 349
            I     L S  E+GL  NL    I     +   + + G H  +SL+   I      CD D
Sbjct: 1266 IYDCPNLVSFAEEGLSLNLTSFWIRNCKNLKMPLYQWGLHGLTSLQTFVINNVAPFCDHD 1325

Query: 350  MVSFPPEDRRLGTTLP-LPASLASLTIGDFPNLERLSS-SIVDLQNLKYLKLYDCPKLKY 407
                         +LP LP +L  L+I  F NLE LSS  + +L +L+ L++Y CPKL+ 
Sbjct: 1326 -------------SLPLLPRTLTYLSISKFHNLESLSSMGLQNLTSLEILEIYSCPKLQT 1372

Query: 408  FSEK-GLPSSLLRLYIDECPLIEEKCRKDGEQYWDLLTHIPRVRI 451
            F  K GL ++L  L I  CP+IE +CRK+  + W +++HIPR+ +
Sbjct: 1373 FLPKEGLSATLSNLRIKFCPIIEARCRKNKGEDWPMISHIPRIDM 1417

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	461
TAIR|locus:2091662	1424	AT3G14460 [Arabidopsis thalian	0.702	0.227	0.314	1.3e-24
TAIR|locus:2163426	1187	TAO1 "target of AVRB operation	0.583	0.226	0.273	1.2e-16
TAIR|locus:2094498	1981	AT3G25510 [Arabidopsis thalian	0.594	0.138	0.287	3e-16
TAIR|locus:2175991	1294	AT5G17680 [Arabidopsis thalian	0.791	0.282	0.263	1.3e-13
TAIR|locus:2151506	1127	RPS6 "RESISTANT TO P. SYRINGAE	0.570	0.233	0.259	3.5e-11
TAIR|locus:2053405	1215	AT2G14080 [Arabidopsis thalian	0.744	0.282	0.248	3.9e-11
TAIR|locus:2147992	1189	AT5G11250 [Arabidopsis thalian	0.735	0.285	0.258	4.9e-11
TAIR|locus:2028681	1161	AT1G31540 [Arabidopsis thalian	0.505	0.200	0.282	6.1e-11
TAIR|locus:2205804	1556	AT1G27180 [Arabidopsis thalian	0.828	0.245	0.250	1.9e-10
TAIR|locus:2153072	1229	AT5G51630 [Arabidopsis thalian	0.718	0.269	0.236	1.9e-10

TAIR|locus:2091662 AT3G14460 [Arabidopsis thaliana (taxid:3702)]

 Score = 290 (107.1 bits), Expect = 1.3e-24, Sum P(2) = 1.3e-24
 Identities = 117/372 (31%), Positives = 185/372 (49%)

Query:   102 SSLEILKIWSCHSLPYIARVQLPPSLKRLDISHCDNIRTLTVEDGIQSSSRRYTSYLLEK 161
             + +E LK+     L     ++LP +L+ L I  CD + +L      ++ +  Y +  L +
Sbjct:  1073 TDMEYLKVTDISHL-----MELPQNLQSLHIDSCDGLTSLP-----ENLTESYPN--LHE 1120

Query:   162 LEIWDCPSLTCIFSKNELPATLESLEVGN----------QPP----SLKSLNVWS-CSKL 206
             L I  C SL   F  +  P TL++L + +          QP      L+ L + S CS L
Sbjct:  1121 LLIIACHSLES-FPGSHPPTTLKTLYIRDCKKLNFTESLQPTRSYSQLEYLFIGSSCSNL 1179

Query:   207 ESIAERLDNNTSLEMISILWCENLK-F-LPSGLHNLR-QLQEIQLWGCENLVSFPEGGLP 263
              +    L     L  +SI  CE+ K F + +GL + R  L+ +++  C NL +FP+GGLP
Sbjct:  1180 VNFP--LSLFPKLRSLSIRDCESFKTFSIHAGLGDDRIALESLEIRDCPNLETFPQGGLP 1237

Query:   264 CAKLSKLGIYRCERLEALPKGLHNLKSLKKLRIGGKLPSLEE---DGLPTNLHFLKIERN 320
               KLS + +  C++L+ALP+ L  L SL  L I  K P +E     G P+NL  L I   
Sbjct:  1238 TPKLSSMLLSNCKKLQALPEKLFGLTSLLSLFII-KCPEIETIPGGGFPSNLRTLCISLC 1296

Query:   321 MEIWKSMIERGFHKFSSLRHLTIEGCDDDMVSFPPEDRRLGTTLPLPASLASLTIGDFPN 380
              ++    IE G     +LR+L I+G ++D+ SFP E    G    LP S+ SL I  F N
Sbjct:  1297 DKL-TPRIEWGLRDLENLRNLEIDGGNEDIESFPEE----GL---LPKSVFSLRISRFEN 1348

Query:   381 LERLS-SSIVDLQNLKYLKLYDCPKLKYFSEKGLPSSLLRLYIDECPLIEEKCRKDGEQY 439
             L+ L+     D + ++ +++  C KL+   ++ LP  L  L I  C L+ E   +   ++
Sbjct:  1349 LKTLNRKGFHDTKAIETMEISGCDKLQISIDEDLPP-LSCLRISSCSLLTETFAEVETEF 1407

Query:   440 WDLLTHIPRVRI 451
             + +L +IP V I
Sbjct:  1408 FKVL-NIPYVEI 1418

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2163426 TAO1 "target of AVRB operation1" [Arabidopsis thaliana (taxid:3702)]

 Score = 239 (89.2 bits), Expect = 1.2e-16, P = 1.2e-16
 Identities = 77/282 (27%), Positives = 130/282 (46%)

Query:    31 LEYLILRYCKGLVKLPQXXXXXXXXREIEICRCHSLVSFPE-VALPSKLKKIEIRECDAL 89
             L+ L L  C  LV+LP          E+++  C SLV  P  +   + LKK+ +  C +L
Sbjct:   682 LQELRLINCLSLVELPSSIGNATNLLELDLIDCSSLVKLPSSIGNLTNLKKLFLNRCSSL 741

Query:    90 KSLPEAWMCGTNSSLEILKIWSCHSLPYI-ARVQLPPSLKRLDISHCDNIRTLTVEDGIQ 148
               LP ++  G  +SL+ L +  C SL  I + +    +LK++    C ++  L    G  
Sbjct:   742 VKLPSSF--GNVTSLKELNLSGCSSLLEIPSSIGNIVNLKKVYADGCSSLVQLPSSIGNN 799

Query:   149 SSSRRYTSYLLEKLEIWDCPSLTCIFSKNE---LPATLESLE---VGNQPPSLKSLNVWS 202
             ++ +    +LL    + +CPS     ++ E   L   L  ++   +GN   +L+SL +  
Sbjct:   800 TNLKEL--HLLNCSSLMECPSSMLNLTRLEDLNLSGCLSLVKLPSIGNVI-NLQSLYLSD 856

Query:   203 CSKLESIAERLDNNTSLEMISILWCENLKFLPSGLHNLRQLQEIQLWGCENLVSFPEGGL 262
             CS L  +   ++N T+L+ + +  C NL  LPS + N+  LQ + L GC +L   P    
Sbjct:   857 CSSLMELPFTIENATNLDTLYLDGCSNLLELPSSIWNITNLQSLYLNGCSSLKELPSLVE 916

Query:   263 PCAKLSKLGIYRCERLEALPKGLHNLKSLKKLRIGGKLPSLE 304
                 L  L + +C  L  LP  +  + +L  L +      LE
Sbjct:   917 NAINLQSLSLMKCSSLVELPSSIWRISNLSYLDVSNCSSLLE 958

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0042742 "defense response to bacterium" evidence=IMP

TAIR|locus:2094498 AT3G25510 [Arabidopsis thaliana (taxid:3702)]

 Score = 241 (89.9 bits), Expect = 3.0e-16, Sum P(2) = 3.0e-16
 Identities = 87/303 (28%), Positives = 142/303 (46%)

Query:    31 LEYLILRYCKGLVKLPQXXXXXXXXREIEICRCHSLVSFP-EVALPSKLKKIEIRECDAL 89
             L+ L L  C  LV+LP         + +++  C  L+  P  +   + LKK  +  C +L
Sbjct:   737 LQSLDLNECSSLVELPSSIGNAINLQNLDL-GCLRLLKLPLSIVKFTNLKKFILNGCSSL 795

Query:    90 KSLPEAWMCGTNSSLEILKIWSCHSLPYI-ARVQLPPSLKRLDISHCDNIRTLTVEDG-- 146
               LP     G  ++L+ L + +C SL  + + +    +L+ LD+S+C ++  L    G  
Sbjct:   796 VELP---FMGNATNLQNLDLGNCSSLVELPSSIGNAINLQNLDLSNCSSLVKLPSFIGNA 852

Query:   147 --IQSSSRRYTSYLLE-------KLEIWDCPSLTCIFSKNELPATLESLEVGNQPPSLKS 197
               ++    R  S L+E          +W      C  S  ELP++     VGN    L+ 
Sbjct:   853 TNLEILDLRKCSSLVEIPTSIGHVTNLWRLDLSGCS-SLVELPSS-----VGNIS-ELQV 905

Query:   198 LNVWSCSKLESIAERLDNNTSLEMISILWCENLKFLPSGLHNLRQLQEIQLWGCENLVSF 257
             LN+ +CS L  +     + T+L  + +  C +L  LPS + N+  LQE+ L  C NLV  
Sbjct:   906 LNLHNCSNLVKLPSSFGHATNLWRLDLSGCSSLVELPSSIGNITNLQELNLCNCSNLVKL 965

Query:   258 PEGGLPCAKLSKLGIYRCERLEALPKGLHNLKSLKKLRIG--GKLPSLEEDGLPTNLHFL 315
             P        L  L + RC++LEALP  + NLKSL++L +    +  S  E  + TN+  L
Sbjct:   966 PSSIGNLHLLFTLSLARCQKLEALPSNI-NLKSLERLDLTDCSQFKSFPE--ISTNIECL 1022

Query:   316 KIE 318
              ++
Sbjct:  1023 YLD 1025

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2175991 AT5G17680 [Arabidopsis thaliana (taxid:3702)]

 Score = 212 (79.7 bits), Expect = 1.3e-13, P = 1.3e-13
 Identities = 109/414 (26%), Positives = 175/414 (42%)

Query:    31 LEYLILRYCKGLVKLPQXXXXXXXXREIEICRCHSLVSFPEVALPSKLKKIEIRECDALK 90
             LE L L YC+ LV++              +  C  L   P   +   L+ + +  C +LK
Sbjct:   650 LEELNLSYCQSLVEVTPSIKNLKGLSCFYLTNCIQLKDIPIGIILKSLETVGMSGCSSLK 709

Query:    91 SLPE-AWMCGTNSSLEILKIWSCHSLPY-IARVQLPPSLKRLDISHCDNIRTLTVEDGIQ 148
               PE +W    N+    L       LP  I+R+     L +LD+S C  +RTL       
Sbjct:   710 HFPEISW----NTRRLYLSSTKIEELPSSISRLSC---LVKLDMSDCQRLRTLP------ 756

Query:   149 SSSRRYTSYL--LEKLEIWDCPSLTCIFSKNELPATLESLEVG-----NQPPSLK-SLNV 200
                  Y  +L  L+ L +  C  L  +    +   +LE+LEV      N+ P +  S+ V
Sbjct:   757 ----SYLGHLVSLKSLNLDGCRRLENLPDTLQNLTSLETLEVSGCLNVNEFPRVSTSIEV 812

Query:   201 WSCSK--LESIAERLDNNTSLEMISILWCENLKFLPSGLHNLRQLQEIQLWGCENLVSFP 258
                S+  +E I  R+ N + L  + I   + L  LP  +  LR L++++L GC  L SFP
Sbjct:   813 LRISETSIEEIPARICNLSQLRSLDISENKRLASLPVSISELRSLEKLKLSGCSVLESFP 872

Query:   259 EGGLPCAKLSKLGIYRCER--LEALPKGLHNLKSLKKLRIGGKLPSLEEDGLP--TNLHF 314
                  C  +S L  +  +R  ++ LP+ + NL +L+ L+    +       +   T L  
Sbjct:   873 LE--ICQTMSCLRWFDLDRTSIKELPENIGNLVALEVLQASRTVIRRAPWSIARLTRLQV 930

Query:   315 LKIERNMEIWKSMIER---GFHKFSSLRHLTIEGCDDDMVSFPPEDRRLGTTLPLPASLA 371
             L I  +    + ++        +F  LR L++   +  M   P     L   L L  S  
Sbjct:   931 LAIGNSFFTPEGLLHSLCPPLSRFDDLRALSLSNMN--MTEIPNSIGNLWNLLELDLS-- 986

Query:   372 SLTIGDFPNLERLSSSIVDLQNLKYLKLYDCPKLKYFSEKGLPSSLLRLYIDEC 425
                 G+  N E + +SI  L  L  L L +C +L+   ++ LP  LL +YI  C
Sbjct:   987 ----GN--NFEFIPASIKRLTRLNRLNLNNCQRLQALPDE-LPRGLLYIYIHSC 1033

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2151506 RPS6 "RESISTANT TO P. SYRINGAE 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 189 (71.6 bits), Expect = 3.5e-11, P = 3.5e-11
 Identities = 77/297 (25%), Positives = 132/297 (44%)

Query:    78 LKKIEIRECDALKSLPEAWMCGTNSSLEILKIWSCHSLPYI-ARVQLPPSLKRLDISHCD 136
             L+ +++R    LK +P+  M  TN  LE LK+ SC SL  + + +Q    L  LD+S+CD
Sbjct:   635 LRNMDLRGSRNLKEIPDLSMA-TN--LETLKLSSCSSLVELPSSIQYLNKLNDLDMSYCD 691

Query:   137 NIRTLTVEDGIQSSSRRYTSYLLEKLEIWDCPSLTCIFSKNELPATLESLEVGNQPPSLK 196
             ++ T  +  G+   S       L++L +  C  L       ++P  +  L++G       
Sbjct:   692 HLET--IPSGVNLKS-------LDRLNLSGCSRLKSFL---DIPTNISWLDIGQTADIPS 739

Query:   197 SLNVWSCSKLESIAERLDNNTSL-EMIS-----ILWCENLKFL--PSGLHNLRQLQEIQL 248
             +L + +  +L  + ER+   T L  M+S     + +  N  F+  PS + NL QL+ +++
Sbjct:   740 NLRLQNLDEL-ILCERVQLRTPLMTMLSPTLTRLTFSNNPSFVEVPSSIQNLYQLEHLEI 798

Query:   249 WGCENLVSFPEGGLPCAKLSKLGIYRCERLEALPKGLHNLKSLKKLRIG-GKLP-SLEED 306
               C NLV+ P G +    L  L +  C +L+  P    N+  L        ++P S+E+ 
Sbjct:   799 MNCRNLVTLPTG-INLDSLISLDLSHCSQLKTFPDISTNISDLNLSYTAIEEVPLSIEKL 857

Query:   307 GLPTNL------HFLKIERNMEIWKSMIERGFHKFSSLRHLTIEGCDDDMVSFPPED 357
              L   L      + L +  N+   K +    F     L   +  G   +MV   P D
Sbjct:   858 SLLCYLDMNGCSNLLCVSPNISKLKHLERADFSDCVELTEASWNGSSSEMVKLLPAD 914

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0042742 "defense response to bacterium" evidence=IMP

TAIR|locus:2053405 AT2G14080 [Arabidopsis thaliana (taxid:3702)]

 Score = 189 (71.6 bits), Expect = 3.9e-11, P = 3.9e-11
 Identities = 97/390 (24%), Positives = 173/390 (44%)

Query:    56 REIEICRCHSLVSFPEVALPSKLKKIEIRECDALKSLPEAWMCGTNSSLEILKIWSCHSL 115
             + +++    +L   P+++  + L+ + +  C +L  LP  +  G  + L  L++  C SL
Sbjct:   677 KRMDLFSSKNLKELPDLSSATNLEVLNLNGCSSLVELP--FSIGNATKLLKLELSGCSSL 734

Query:   116 PYI-ARVQLPPSLKRLDISHCDNIRTLTVEDGIQSSSRRYTSYLLEKLE-----IWDCPS 169
               + + +    +L+ +D SHC+N+  L    G  ++ +         L+     I +C +
Sbjct:   735 LELPSSIGNAINLQTIDFSHCENLVELPSSIGNATNLKELDLSCCSSLKELPSSIGNCTN 794

Query:   170 LT-----CIFSKNELPATLESLEVGNQPPSLKSLNVWSCSKLESIAERLDNNTSLEMISI 224
             L      C  S  ELP++     +GN   +LK L++  CS L  +   + N  +LE + +
Sbjct:   795 LKKLHLICCSSLKELPSS-----IGNCT-NLKELHLTCCSSLIKLPSSIGNAINLEKLIL 848

Query:   225 LWCENLKFLPSGLHNLRQLQEIQLWGCENLVSFPE--GGLPCAKLSKLGIYRCERLEALP 282
               CE+L  LPS +     L+ + L     LV  P   G L   KLS+L +  C++L+ LP
Sbjct:   849 AGCESLVELPSFIGKATNLKILNLGYLSCLVELPSFIGNLH--KLSELRLRGCKKLQVLP 906

Query:   283 KGLHNLKSLKKLRIGGKLPSLEEDGLPTNLHFLKIERNM--EIWKSMIERGFHKFSSLRH 340
               + NL+ L +L +   +       + TN+  L +      E+  S+  R + +   L+ 
Sbjct:   907 TNI-NLEFLNELDLTDCILLKTFPVISTNIKRLHLRGTQIEEVPSSL--RSWPRLEDLQM 963

Query:   341 LTIEGCDDDMVSFPPEDRRLGTTLPLPASLASLTIGDF-PNLERLSSSIVDLQNLKYLKL 399
             L  E   +    F     R+ T L     L+ + I +  P L R++        L+ LKL
Sbjct:   964 LYSENLSE----FSHVLERI-TVL----ELSDINIREMTPWLNRIT-------RLRRLKL 1007

Query:   400 YDCPKLKYFSEKGLPSSLLRLYIDECPLIE 429
               C KL    +  L  SL+ L  + C  +E
Sbjct:  1008 SGCGKLVSLPQ--LSDSLIILDAENCGSLE 1035

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2147992 AT5G11250 [Arabidopsis thaliana (taxid:3702)]

 Score = 188 (71.2 bits), Expect = 4.9e-11, P = 4.9e-11
 Identities = 98/379 (25%), Positives = 162/379 (42%)

Query:    22 QQLCELSC--RLEYLILRYCKGLVKLPQXXXXXXXXREIEICRCHSLVSFPEVALPSKLK 79
             ++L +LS    L  LIL  C  L+KLP          ++++  C SLV  P       L+
Sbjct:   690 KELPDLSTAINLRKLILSNCSSLIKLPSCIGNAINLEDLDLNGCSSLVELPSFGDAINLQ 749

Query:    80 KIEIRECDALKSLPEAWMCGTNSSLEILKIWSCHSLPYI-ARVQLPPSLKRLDISHCDNI 138
             K+ +R C  L  LP +   G   +L  L ++ C SL  + + +    +L  LD++ C N+
Sbjct:   750 KLLLRYCSNLVELPSS--IGNAINLRELDLYYCSSLIRLPSSIGNAINLLILDLNGCSNL 807

Query:   139 RTLTVEDG----IQSSSRRYTSYLLE-KLEIWDCPSLTCIFSKNELPATLE-SLEVGNQP 192
               L    G    +Q    R  + LLE    I +  +L  +   ++  + LE    +GN  
Sbjct:   808 LELPSSIGNAINLQKLDLRRCAKLLELPSSIGNAINLQNLLL-DDCSSLLELPSSIGNAT 866

Query:   193 PSLKSLNVWSCSKLESIAERLDNNTSLEMISILWCENLKFLPSGLHNLRQLQEIQLWGCE 252
              +L  +N+ +CS L  +   + N   L+ + +  C  L+ LP  + NL  L  + L  C 
Sbjct:   867 -NLVYMNLSNCSNLVELPLSIGNLQKLQELILKGCSKLEDLPINI-NLESLDILVLNDCS 924

Query:   253 NLVSFPEGGLPCAKLSKLGIYRC-ERLEALPKGLHNLKSLKKLRIGGKLPSLEEDGLPTN 311
              L  FPE        +   +Y C   +E +P  + +   L +L +     +L E   P  
Sbjct:   925 MLKRFPE-----ISTNVRALYLCGTAIEEVPLSIRSWPRLDELLMS-YFDNLVE--FP-- 974

Query:   312 LHFLKIERNMEIWKSMIERG---FHKFSSLRHLTIEGCDDDMVSFPPEDRRLGTTLPLPA 368
              H L I  N+++    I+       + S L+ L ++G    +VS P           +P 
Sbjct:   975 -HVLDIITNLDLSGKEIQEVPPLIKRISRLQTLILKGYRK-VVSLPQ----------IPD 1022

Query:   369 SLASLTIGDFPNLERLSSS 387
             SL  +   D  +LERL  S
Sbjct:  1023 SLKWIDAEDCESLERLDCS 1041

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2028681 AT1G31540 [Arabidopsis thaliana (taxid:3702)]

 Score = 187 (70.9 bits), Expect = 6.1e-11, P = 6.1e-11
 Identities = 72/255 (28%), Positives = 121/255 (47%)

Query:   183 LESLEVGNQPPS-LKSLNVWSCSKLESIAERLDNNTSLEMISILWCENLKFLPSGLHNLR 241
             L  L  G  P + LK +++   S L+ I + L   T+LE++++ +CE+L  LPS + NL 
Sbjct:   617 LHKLWEGVAPLTCLKEMDLHGSSNLKVIPD-LSEATNLEILNLKFCESLVELPSSIRNLN 675

Query:   242 QLQEIQLWGCENLVSFPEGGLPCAKLSKLGIYRCERLEALPKGLHNLKSLKKLRIGGKLP 301
             +L  + +  C++L   P G      L +L +Y C +L+  PK   N+  L        L 
Sbjct:   676 KLLNLDMLNCKSLKILPTG-FNLKSLDRLNLYHCSKLKTFPKFSTNISVLNL-----NLT 729

Query:   302 SLEEDGLPTNLHFLKIERNMEIWKSMIERGFHKFSSLRHLTIEGCDDDMVSFPPEDRRLG 361
             ++E+   P+NLH   +       +   E+ + +   L           + S   E+  L 
Sbjct:   730 NIED--FPSNLHLENLVEFRISKEESDEKQWEEEKPLTPFLAMMLSPTLTSLHLEN--LP 785

Query:   362 TTLPLPAS------LASLTIGDFPNLERLSSSIVDLQNLKYLKLYDCPKLKYFSEKGLPS 415
             + + L +S      L  L I +  NLE L + I +LQ+L YL    C +L+ F E  + +
Sbjct:   786 SLVELTSSFQNLNQLKDLIIINCINLETLPTGI-NLQSLDYLCFSGCSQLRSFPE--IST 842

Query:   416 SLLRLYIDECPLIEE 430
             ++  LY+DE   IEE
Sbjct:   843 NISVLYLDETA-IEE 856

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2205804 AT1G27180 [Arabidopsis thaliana (taxid:3702)]

 Score = 184 (69.8 bits), Expect = 1.9e-10, P = 1.9e-10
 Identities = 107/427 (25%), Positives = 187/427 (43%)

Query:    27 LSCRLEYLILRYCKGLVKLPQXXXXXXXXREIEICRCHSLVSFP-EVALPSKLKKIEIRE 85
             L C LE   L  C  L  LP+        +E+ +    ++ + P  +    KL+K+ +  
Sbjct:   913 LKC-LEKFFLSGCSNLSVLPENIGSMPCLKEL-LLDGTAISNLPYSIFRLQKLEKLSLMG 970

Query:    86 CDALKSLPEAWMCGTNSSLEILKI--WSCHSLPYIARVQLPPSLKRLDISHCDNIRTL-- 141
             C +++ LP     G  +SLE L +   +  +LP  + +    +L++L +  C ++ T+  
Sbjct:   971 CRSIEELPSC--VGYLTSLEDLYLDDTALRNLP--SSIGDLKNLQKLHLMRCTSLSTIPE 1026

Query:   142 TVEDGIQSSSRRYTSYLLEKLEIWDCPSLTCIFSKNELPATLESLEVGNQPPSLKSLNVW 201
             T+   +           +E+L I +  SL C+    +L A  +   +   P S+  LN  
Sbjct:  1027 TINKLMSLKELFINGSAVEELPI-ETGSLLCL---TDLSAG-DCKFLKQVPSSIGGLNSL 1081

Query:   202 -----SCSKLESIAERLDNNTSLEMISILWCENLKFLPSGLHNLRQLQEIQLWGCENLVS 256
                    + +E++ E + +   +  + +  C++LK LP  +  +  L  + L G  N+  
Sbjct:  1082 LQLQLDSTPIEALPEEIGDLHFIRQLDLRNCKSLKALPKTIGKMDTLYSLNLVG-SNIEE 1140

Query:   257 FPEGGLPCAKLSKLGIYRCERLEALPKGLHNLKSLKKLRIGGKLPS-LEED-GLPTNLHF 314
              PE       L +L +  C+ L+ LPK   +LKSL +L +   L + L E  G  +NL  
Sbjct:  1141 LPEEFGKLENLVELRMNNCKMLKRLPKSFGDLKSLHRLYMQETLVAELPESFGNLSNLMV 1200

Query:   315 LKIERN--MEIWKSMI-----ERGF----HKFSSLRHLT-IEGCDDDMVSFPPEDRRLGT 362
             L++ +     I +S +     E  F    + FS L  L  ++ C   +    P+D     
Sbjct:  1201 LEMLKKPLFRISESNVPGTSEEPRFVEVPNSFSKLLKLEELDACSWRISGKIPDD----- 1255

Query:   363 TLPLPASLASLTIGDFPNLERLSSSIVDLQNLKYLKLYDCPKLKYFSEKGLPSSLLRLYI 422
              L   + L  L +G+      L SS+V L NL+ L L DC +LK      LP  L +L +
Sbjct:  1256 -LEKLSCLMKLNLGN-NYFHSLPSSLVKLSNLQELSLRDCRELKRLPP--LPCKLEQLNL 1311

Query:   423 DECPLIE 429
               C  +E
Sbjct:  1312 ANCFSLE 1318

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2153072 AT5G51630 [Arabidopsis thaliana (taxid:3702)]

 Score = 193 (73.0 bits), Expect = 1.9e-10, Sum P(2) = 1.9e-10
 Identities = 86/363 (23%), Positives = 171/363 (47%)

Query:    30 RLEYLI---LRYCKGLVKLPQXXXXXXXXREIEICRCHSLVSFPEVALPSKLKKIEIREC 86
             + EYL+   + Y + L +L +        +++++ +  +L   P+++    L+++++  C
Sbjct:   599 KAEYLVNLEMAYSQ-LERLWEGTQQLGSLKKMDLSKSENLKEIPDLSYAVNLEEMDLCSC 657

Query:    87 DALKSLPEAWMCGTNSSLEILKIWSCHSLPYIARVQLPPSLKRLDISHCDNIRTLT-VED 145
              +L +LP +        L +L++ SC ++  +       SL  L++  C  +R+   +  
Sbjct:   658 KSLVTLPSS--VRNLDKLRVLRMSSCSNVEVLPTDLNLESLDLLNLEDCSQLRSFPQISR 715

Query:   146 GIQSSSRRYTSYLLEKLEIWDCPSLTCIFSKNELPATLESLEVGNQPPSLKSLNVWSCSK 205
              I   +   T+ + E+  +W   +++ +         L+SL    +   L SL++ + SK
Sbjct:   716 NISILNLSGTA-IDEESSLW-IENMSRLTHLRWDFCPLKSLPSNFRQEHLVSLHM-THSK 772

Query:   206 LESIAERLDNNTSLEMISILWCENLKFLPSGLHNLRQLQEIQLWGCENLVSFPEGGLPCA 265
             LE + E      +L  I +   E LK  P+ L  +  L  + L+GC++LV+ P      +
Sbjct:   773 LEKLWEGAQPFGNLVNIDLSLSEKLKEFPN-LSKVTNLDTLDLYGCKSLVTVPSSIQSLS 831

Query:   266 KLSKLGIYRCERLEALPKGLHNLKSLKKLRIGG--KLPSLEEDGLPTNLHFLKIERN-ME 322
             KL++L + RC  LEALP  + NL+SL  L + G  KL +  +  +  N+  L ++   +E
Sbjct:   832 KLTELNMRRCTGLEALPTDV-NLESLHTLDLSGCSKLTTFPK--ISRNIERLLLDDTAIE 888

Query:   323 IWKSMIERGFHKFSSLRHLTIEGCDDDMVSFPPEDRRLGTTLPLPASLASLTIGDFPNLE 382
                S I+     F  L  L+++GC           R + T++     L  + + +F + E
Sbjct:   889 EVPSWID----DFFELTTLSMKGCK--------RLRNISTSI---CELKCIEVANFSDCE 933

Query:   383 RLS 385
             RL+
Sbjct:   934 RLT 936

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00660113 hypothetical protein (552 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	461
PLN03210	1153	PLN03210, PLN03210, Resistant to P	4e-10
PLN03210	1153	PLN03210, PLN03210, Resistant to P	4e-09
PLN03210	1153	PLN03210, PLN03210, Resistant to P	8e-09

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score = 62.2 bits (151), Expect = 4e-10
 Identities = 88/346 (25%), Positives = 137/346 (39%), Gaps = 53/346 (15%)

Query: 27  LSCRLEYLILRYCKGLVKLPQSSLSLSSLREIEICRCHSLVSFPEVALPSKLKKIEIREC 86
           ++  LE L L  C  LV+LP S   L+ L ++++ RC +L   P       L ++ +  C
Sbjct: 655 MATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGINLKSLYRLNLSGC 714

Query: 87  DALKSLPE-----AWMCGTNSSLE------------ILKIWSCHSLPYIARVQ------- 122
             LKS P+     +W+    +++E             L +    S     RVQ       
Sbjct: 715 SRLKSFPDISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMT 774

Query: 123 -LPPSLKRLDISHCDNIRTLTVEDGIQSSSRRYTSYLLEKLEIWDCPSLTCIFSKNELPA 181
            L PSL RL +S   +I +L VE  + SS +      LE LEI +C              
Sbjct: 775 MLSPSLTRLFLS---DIPSL-VE--LPSSIQNLHK--LEHLEIENC-------------I 813

Query: 182 TLESLEVGNQPPSLKSLNVWSCSKLESIAERLDNNTSLEMISILWCENLKFLPSGLHNLR 241
            LE+L  G    SL+SL++  CS+L +     D +T++  +  L    ++ +P  +    
Sbjct: 814 NLETLPTGINLESLESLDLSGCSRLRTFP---DISTNISDL-NLSRTGIEEVPWWIEKFS 869

Query: 242 QLQEIQLWGCENLVSFPEGGLPCAKLSKLGIYRCERL-EALPKGLHNLKSLKKLRIGGKL 300
            L  + + GC NL            L  +    C  L EA   G  +  ++    I  KL
Sbjct: 870 NLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEASWNGSPSEVAMATDNIHSKL 929

Query: 301 PSLEEDGLPT--NLHFLKIERNMEIWKSMIERGFHKFSSLRHLTIE 344
           PS          NL    + +   I+K +I  G    S   H T  
Sbjct: 930 PSTVCINFINCFNLDQEALLQQQSIFKQLILSGEEVPSYFTHRTTG 975

syringae 6; Provisional. Length = 1153

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score = 58.7 bits (142), Expect = 4e-09
 Identities = 64/233 (27%), Positives = 99/233 (42%), Gaps = 50/233 (21%)

Query: 183 LESLEVGNQP-PSLKSLNVWSCSKLESIAERLDNNTSLEMISILWCENLKFLPSGLHNLR 241
           LE L  G      L+++++     L+ I + L   T+LE + +  C +L  LPS +  L 
Sbjct: 623 LEKLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLN 681

Query: 242 QLQEIQLWGCENLVSFPEGGLPCAKLSKLGIYRCERLEALPKGLHNLKSLKKLRIGG--K 299
           +L+++ +  CENL   P G                          NLKSL +L + G  +
Sbjct: 682 KLEDLDMSRCENLEILPTG-------------------------INLKSLYRLNLSGCSR 716

Query: 300 LPSLEEDGLPTNLHFLKIERNMEIWKSMIERGFHKFSSLRHLTIEGCDD----DMVSFPP 355
           L S           F  I  N+  W  + E    +F S   L  E  D+    +M S   
Sbjct: 717 LKS-----------FPDISTNIS-WLDLDETAIEEFPSNLRL--ENLDELILCEMKSEKL 762

Query: 356 EDR-RLGTTL--PLPASLASLTIGDFPNLERLSSSIVDLQNLKYLKLYDCPKL 405
            +R +  T L   L  SL  L + D P+L  L SSI +L  L++L++ +C  L
Sbjct: 763 WERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINL 815

syringae 6; Provisional. Length = 1153

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score = 58.0 bits (140), Expect = 8e-09
 Identities = 88/363 (24%), Positives = 141/363 (38%), Gaps = 103/363 (28%)

Query: 78  LKKIEIRECDALKSLPEAWMCGTNSSLEILKIWSCHSLPYIARVQLPPS------LKRLD 131
           L+ I++R    LK +P+  M    ++LE LK+  C SL     V+LP S      L+ LD
Sbjct: 636 LRNIDLRGSKNLKEIPDLSMA---TNLETLKLSDCSSL-----VELPSSIQYLNKLEDLD 687

Query: 132 ISHCDNIRTLTVEDGIQSSSRRYTSYLLEKLEIWDCPSLTCIFSKNELPATLESLEVGNQ 191
           +S C+N+  L     ++S         L +L +  C  L    S  ++   +  L++   
Sbjct: 688 MSRCENLEILPTGINLKS---------LYRLNLSGCSRLK---SFPDISTNISWLDLDET 735

Query: 192 -----PPSLKSLNVWSCSKLESIAERLDNNT------------SLEMISILWCENLKFLP 234
                P +L+  N+      E  +E+L                SL  + +    +L  LP
Sbjct: 736 AIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELP 795

Query: 235 SGLHNLRQLQEIQLWGCENLVSFPEGGLPCAKLSKLGIYRCERLEALPKGLHNLKSLKKL 294
           S + NL +L+ +++  C NL + P G +    L  L +  C RL   P    N+  L   
Sbjct: 796 SSIQNLHKLEHLEIENCINLETLPTG-INLESLESLDLSGCSRLRTFPDISTNISDLNLS 854

Query: 295 RIGGKLPSLEEDGLPTNLHFLKIERNMEIWKSMIERGFHKFSSLRHLTIEGCDDDMVSFP 354
           R G     +EE               +  W   IE    KFS+L  L + GC+       
Sbjct: 855 RTG-----IEE---------------VPWW---IE----KFSNLSFLDMNGCN------- 880

Query: 355 PEDRRLGTTLPLPASLASLTIGDFPNLERLSSSIVDLQNLKYLKLYDCPKLKYFSEKGLP 414
                                    NL+R+S +I  L++L+ +   DC  L   S  G P
Sbjct: 881 -------------------------NLQRVSLNISKLKHLETVDFSDCGALTEASWNGSP 915

Query: 415 SSL 417
           S +
Sbjct: 916 SEV 918

syringae 6; Provisional. Length = 1153

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	461
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.96
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.96
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.93
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.91
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.9
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.89
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.84
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.82
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.79
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.77
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.71
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.67
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.56
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.52
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.43
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.42
KOG4341	483	consensus F-box protein containing LRR [General fu	99.39
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.39
KOG4341	483	consensus F-box protein containing LRR [General fu	99.34
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.12
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.07
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	99.03
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.0
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.98
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.9
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.89
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.75
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.68
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.67
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.62
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.62
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.51
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.49
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.47
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.43
PRK15386	426	type III secretion protein GogB; Provisional	98.43
PRK15386	426	type III secretion protein GogB; Provisional	98.42
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.29
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.1
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.08
KOG1947	482	consensus Leucine rich repeat proteins, some prote	98.05
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.02
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	97.98
KOG1947	482	consensus Leucine rich repeat proteins, some prote	97.96
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.95
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	97.86
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	97.83
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.79
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.7
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.68
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	97.58
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.52
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	97.5
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.48
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	97.46
PLN03150	623	hypothetical protein; Provisional	97.43
PLN03150	623	hypothetical protein; Provisional	97.39
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	97.32
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.18
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	96.99
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	96.54
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.29
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	96.23
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.1
KOG3864	221	consensus Uncharacterized conserved protein [Funct	95.83
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	95.26
KOG2123	388	consensus Uncharacterized conserved protein [Funct	95.23
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	94.8
KOG3864	221	consensus Uncharacterized conserved protein [Funct	93.99
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	93.8
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	93.73
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	93.54
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	93.27
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	91.75
smart00367	26	LRR_CC Leucine-rich repeat - CC (cysteine-containi	89.43

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.96  E-value=4.9e-28  Score=262.10  Aligned_cols=264  Identities=19%  Similarity=0.161  Sum_probs=148.0

Q ss_pred             hhhhhhhhhcCCccEEEecCCcCCccccccCCCCCCcCEEEecCCcCcccccC-CCCCCCccEEEEeecCCccccCcccc
Q 045021           19 DQQQQLCELSCRLEYLILRYCKGLVKLPQSSLSLSSLREIEICRCHSLVSFPE-VALPSKLKKIEIRECDALKSLPEAWM   97 (461)
Q Consensus        19 ~~l~~l~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~-~~~l~~L~~L~l~~~~~l~~~~~~~~   97 (461)
                      ..++.+    ++|++|+++++.-...+|..+.++++|++|++++|.....+|. ++.+++|++|+++++.....+|..+.
T Consensus       158 ~~~~~l----~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~  233 (968)
T PLN00113        158 NDIGSF----SSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIG  233 (968)
T ss_pred             hHHhcC----CCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHh
Confidence            346666    8889999888654446777888888888888888755445565 77788888888888764446676666


Q ss_pred             cCCCCcccEEEeeCCCCCcccccc-CCCCCccEEecccCCCceEeccCCCcccccccccccCccEEEEecCCCCeecccC
Q 045021           98 CGTNSSLEILKIWSCHSLPYIARV-QLPPSLKRLDISHCDNIRTLTVEDGIQSSSRRYTSYLLEKLEIWDCPSLTCIFSK  176 (461)
Q Consensus        98 ~~~~~~L~~L~l~~~~~l~~~~~~-~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~  176 (461)
                      ..  ++|++|+++++......+.. ..+++|+.|+++++.....+|  ..+..      +++|+.|++++ +.+...+|.
T Consensus       234 ~l--~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p--~~l~~------l~~L~~L~Ls~-n~l~~~~p~  302 (968)
T PLN00113        234 GL--TSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIP--PSIFS------LQKLISLDLSD-NSLSGEIPE  302 (968)
T ss_pred             cC--CCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCc--hhHhh------ccCcCEEECcC-CeeccCCCh
Confidence            55  78888888876433333333 566778888887765333444  44443      45677777766 333321221


Q ss_pred             CCCcch--hhhccc------------CCCCCCccEEEEecCCchhhhHHhhcCCCccceeeccccccceecccccCCCCC
Q 045021          177 NELPAT--LESLEV------------GNQPPSLKSLNVWSCSKLESIAERLDNNTSLEMISILWCENLKFLPSGLHNLRQ  242 (461)
Q Consensus       177 ~~~~~~--~~~~~~------------~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~  242 (461)
                      . +...  ++.+.+            ...+++|+.|++.++.....++..+..+++|+.|++++|.....+|.++..+++
T Consensus       303 ~-~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~  381 (968)
T PLN00113        303 L-VIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGN  381 (968)
T ss_pred             h-HcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCC
Confidence            1 0000  000000            001134555555554333344444555555555555554333344444444445


Q ss_pred             ccEEEecCCCCCccCCCCCCCCCCcceEeeccCccccccccccCCCCCccEEEecc
Q 045021          243 LQEIQLWGCENLVSFPEGGLPCAKLSKLGIYRCERLEALPKGLHNLKSLKKLRIGG  298 (461)
Q Consensus       243 L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~l~~L~~L~l~~  298 (461)
                      |+.|++++|.....++.....+++|+.|++.+|.....+|..+..+++|+.|++++
T Consensus       382 L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~  437 (968)
T PLN00113        382 LFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISN  437 (968)
T ss_pred             CCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcC
Confidence            55555554433333333333445666666666544444455555556666666555

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.96  E-value=9.4e-28  Score=259.89  Aligned_cols=315  Identities=18%  Similarity=0.165  Sum_probs=198.4

Q ss_pred             cCCCCccccccch--hhhhh--hhhhhhcCCccEEEecCCcCCccccccCCCCCCcCEEEecCCcCcccccC-CCCCCCc
Q 045021            4 DSCPKLQSLVAEE--EKDQQ--QQLCELSCRLEYLILRYCKGLVKLPQSSLSLSSLREIEICRCHSLVSFPE-VALPSKL   78 (461)
Q Consensus         4 ~~c~~l~~l~~~~--~~~~l--~~l~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~-~~~l~~L   78 (461)
                      ..+.+|++|..+.  +.+.+  ..+    ++|++|+++++.-...+|..++.+++|++|++++|.....+|. ++.+++|
T Consensus       115 ~~l~~L~~L~Ls~n~l~~~~p~~~l----~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L  190 (968)
T PLN00113        115 TTSSSLRYLNLSNNNFTGSIPRGSI----PNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSL  190 (968)
T ss_pred             ccCCCCCEEECcCCccccccCcccc----CCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCC
Confidence            3677888887631  11111  235    9999999999654347788899999999999999865556666 8899999


Q ss_pred             cEEEEeecCCccccCcccccCCCCcccEEEeeCCCCCcccccc-CCCCCccEEecccCCCceEeccCCCccccccccccc
Q 045021           79 KKIEIRECDALKSLPEAWMCGTNSSLEILKIWSCHSLPYIARV-QLPPSLKRLDISHCDNIRTLTVEDGIQSSSRRYTSY  157 (461)
Q Consensus        79 ~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~~~  157 (461)
                      ++|++++|.....+|..+...  ++|+.|+++++.....++.. ..+++|++|+++++.....+|  ..+..      ++
T Consensus       191 ~~L~L~~n~l~~~~p~~l~~l--~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p--~~l~~------l~  260 (968)
T PLN00113        191 EFLTLASNQLVGQIPRELGQM--KSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIP--SSLGN------LK  260 (968)
T ss_pred             CeeeccCCCCcCcCChHHcCc--CCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccC--hhHhC------CC
Confidence            999999988556778777766  99999999987544445543 778999999999987555666  66665      66


Q ss_pred             CccEEEEecCCCCeecccCCCCcchhhhcccCCCCCCccEEEEecCCchhhhHHhhcCCCccceeeccccccceeccccc
Q 045021          158 LLEKLEIWDCPSLTCIFSKNELPATLESLEVGNQPPSLKSLNVWSCSKLESIAERLDNNTSLEMISILWCENLKFLPSGL  237 (461)
Q Consensus       158 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~  237 (461)
                      +|+.|++++ +.+...+|.. +..          +++|+.|++++|.....+|..+..+++|+.|++.+|......|..+
T Consensus       261 ~L~~L~L~~-n~l~~~~p~~-l~~----------l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~  328 (968)
T PLN00113        261 NLQYLFLYQ-NKLSGPIPPS-IFS----------LQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVAL  328 (968)
T ss_pred             CCCEEECcC-CeeeccCchh-Hhh----------ccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhH
Confidence            899999998 5554312221 111          1456777776654444455556666666666666654444555556


Q ss_pred             CCCCCccEEEecCCCCCccCCCCCCCCCCcceEeeccCc------------------------cccccccccCCCCCccE
Q 045021          238 HNLRQLQEIQLWGCENLVSFPEGGLPCAKLSKLGIYRCE------------------------RLEALPKGLHNLKSLKK  293 (461)
Q Consensus       238 ~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~------------------------~~~~~~~~~~~l~~L~~  293 (461)
                      ..+++|+.|++++|.....++.....+++|+.|++++|.                        ....+|..+..+++|+.
T Consensus       329 ~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~  408 (968)
T PLN00113        329 TSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRR  408 (968)
T ss_pred             hcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCE
Confidence            666666666666654333444433344455555555543                        33334444555666666


Q ss_pred             EEecc-cCC-CcCCC-CCCCCcceEEeecCchhhHHhhhhcccCCCCcCEEEEecC
Q 045021          294 LRIGG-KLP-SLEED-GLPTNLHFLKIERNMEIWKSMIERGFHKFSSLRHLTIEGC  346 (461)
Q Consensus       294 L~l~~-~~~-~l~~~-~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~  346 (461)
                      |++++ .+. .++.. ..+++|+.|++++|. +....+ ..+..+++|+.|++++|
T Consensus       409 L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~-l~~~~~-~~~~~l~~L~~L~L~~n  462 (968)
T PLN00113        409 VRLQDNSFSGELPSEFTKLPLVYFLDISNNN-LQGRIN-SRKWDMPSLQMLSLARN  462 (968)
T ss_pred             EECcCCEeeeECChhHhcCCCCCEEECcCCc-ccCccC-hhhccCCCCcEEECcCc
Confidence            66665 222 12211 334556666666554 221111 12334566666666665

>PLN03210 Resistant to P

Probab=99.93  E-value=9.2e-25  Score=237.19  Aligned_cols=344  Identities=22%  Similarity=0.285  Sum_probs=274.1

Q ss_pred             hhhhhhhhhcCCccEEEecCCc-----CC-ccccccCCCCC-CcCEEEecCCcCcccccCCCCCCCccEEEEeecCCccc
Q 045021           19 DQQQQLCELSCRLEYLILRYCK-----GL-VKLPQSSLSLS-SLREIEICRCHSLVSFPEVALPSKLKKIEIRECDALKS   91 (461)
Q Consensus        19 ~~l~~l~~~~~~L~~L~l~~~~-----~l-~~l~~~~~~l~-~L~~L~l~~~~~l~~~~~~~~l~~L~~L~l~~~~~l~~   91 (461)
                      ..+..+    ++|+.|.+....     .. ..+|..+..++ +|+.|++.++ .++.+|....+.+|+.|++.++. +..
T Consensus       552 ~aF~~m----~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~-~l~~lP~~f~~~~L~~L~L~~s~-l~~  625 (1153)
T PLN03210        552 NAFKGM----RNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKY-PLRCMPSNFRPENLVKLQMQGSK-LEK  625 (1153)
T ss_pred             HHHhcC----ccccEEEEecccccccccceeecCcchhhcCcccEEEEecCC-CCCCCCCcCCccCCcEEECcCcc-ccc
Confidence            457777    999999996531     11 14566666664 6999999996 56778875568999999999965 888


Q ss_pred             cCcccccCCCCcccEEEeeCCCCCccccccCCCCCccEEecccCCCceEeccCCCcccccccccccCccEEEEecCCCCe
Q 045021           92 LPEAWMCGTNSSLEILKIWSCHSLPYIARVQLPPSLKRLDISHCDNIRTLTVEDGIQSSSRRYTSYLLEKLEIWDCPSLT  171 (461)
Q Consensus        92 ~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~  171 (461)
                      ++..+...  ++|+.|+++++..++.++....+++|+.|++.+|..+..+|  ..+..      +++|+.|++++|+.++
T Consensus       626 L~~~~~~l--~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp--~si~~------L~~L~~L~L~~c~~L~  695 (1153)
T PLN03210        626 LWDGVHSL--TGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELP--SSIQY------LNKLEDLDMSRCENLE  695 (1153)
T ss_pred             cccccccC--CCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccc--hhhhc------cCCCCEEeCCCCCCcC
Confidence            88776655  99999999999889988888889999999999999998888  77766      7789999999999988


Q ss_pred             ecccCCCCcchhhhcccCCCCCCccEEEEecCCchhhhHHhhcCCCccceeeccccccceecccccCCCCCccEEEecCC
Q 045021          172 CIFSKNELPATLESLEVGNQPPSLKSLNVWSCSKLESIAERLDNNTSLEMISILWCENLKFLPSGLHNLRQLQEIQLWGC  251 (461)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~  251 (461)
                      . +|...-            +++|+.|++.+|..+...|..   ..+|++|+++++ .+..+|..+ .+++|+.|.+.++
T Consensus       696 ~-Lp~~i~------------l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n-~i~~lP~~~-~l~~L~~L~l~~~  757 (1153)
T PLN03210        696 I-LPTGIN------------LKSLYRLNLSGCSRLKSFPDI---STNISWLDLDET-AIEEFPSNL-RLENLDELILCEM  757 (1153)
T ss_pred             c-cCCcCC------------CCCCCEEeCCCCCCccccccc---cCCcCeeecCCC-ccccccccc-ccccccccccccc
Confidence            7 665431            257999999999877766532   468999999886 467777655 5788999988775


Q ss_pred             CCCc------cCCC-CCCCCCCcceEeeccCccccccccccCCCCCccEEEecc--cCCCcCCCCCCCCcceEEeecCch
Q 045021          252 ENLV------SFPE-GGLPCAKLSKLGIYRCERLEALPKGLHNLKSLKKLRIGG--KLPSLEEDGLPTNLHFLKIERNME  322 (461)
Q Consensus       252 ~~l~------~l~~-~~~~~~~L~~L~l~~c~~~~~~~~~~~~l~~L~~L~l~~--~~~~l~~~~~~~~L~~L~l~~~~~  322 (461)
                      ....      .++. ....+++|+.|++++|..+..+|..++++++|+.|++++  .+..+|....+++|+.|++++|..
T Consensus       758 ~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~  837 (1153)
T PLN03210        758 KSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSR  837 (1153)
T ss_pred             chhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCc
Confidence            3211      1111 122346899999999999999999999999999999998  778888777788999999999986


Q ss_pred             hhHHhhhhcccCCCCcCEEEEecCCCcccccCccccccCCCCCCCCCcceeecCCCCCCcccccchhhccCCcEEEecCC
Q 045021          323 IWKSMIERGFHKFSSLRHLTIEGCDDDMVSFPPEDRRLGTTLPLPASLASLTIGDFPNLERLSSSIVDLQNLKYLKLYDC  402 (461)
Q Consensus       323 l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~L~~L~l~~C  402 (461)
                      +....     ...++|+.|+++++  ++..+|.. +      ..+++|+.|++++|++++.++..+..+++|+.+++.+|
T Consensus       838 L~~~p-----~~~~nL~~L~Ls~n--~i~~iP~s-i------~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C  903 (1153)
T PLN03210        838 LRTFP-----DISTNISDLNLSRT--GIEEVPWW-I------EKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDC  903 (1153)
T ss_pred             ccccc-----ccccccCEeECCCC--CCccChHH-H------hcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCC
Confidence            64221     22468999999997  88888876 4      36789999999999999999888888999999999999


Q ss_pred             CCCcccCC
Q 045021          403 PKLKYFSE  410 (461)
Q Consensus       403 ~~l~~~~~  410 (461)
                      .+++.++-
T Consensus       904 ~~L~~~~l  911 (1153)
T PLN03210        904 GALTEASW  911 (1153)
T ss_pred             cccccccC
Confidence            99987644

syringae 6; Provisional

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.91  E-value=1.9e-25  Score=209.55  Aligned_cols=360  Identities=18%  Similarity=0.249  Sum_probs=158.9

Q ss_pred             cCCccEEEecCCcCCccc-cccCCCCCCcCEEEecCCcCcccccCCCC-CCCccEEEEeecCCccccCcccccCCCCccc
Q 045021           28 SCRLEYLILRYCKGLVKL-PQSSLSLSSLREIEICRCHSLVSFPEVAL-PSKLKKIEIRECDALKSLPEAWMCGTNSSLE  105 (461)
Q Consensus        28 ~~~L~~L~l~~~~~l~~l-~~~~~~l~~L~~L~l~~~~~l~~~~~~~~-l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~  105 (461)
                      |+.-+.|++++ +.+.++ +..|.++++|+.+++..+ .++.+|.++. ..+|++|++..+. +..+...-... .+.|+
T Consensus        77 p~~t~~Ldlsn-Nkl~~id~~~f~nl~nLq~v~l~~N-~Lt~IP~f~~~sghl~~L~L~~N~-I~sv~se~L~~-l~alr  152 (873)
T KOG4194|consen   77 PSQTQTLDLSN-NKLSHIDFEFFYNLPNLQEVNLNKN-ELTRIPRFGHESGHLEKLDLRHNL-ISSVTSEELSA-LPALR  152 (873)
T ss_pred             ccceeeeeccc-cccccCcHHHHhcCCcceeeeeccc-hhhhcccccccccceeEEeeeccc-cccccHHHHHh-Hhhhh
Confidence            34555566665 334433 334556666666666653 4555665333 3346666665532 44333221111 15566


Q ss_pred             EEEeeCCCCCccccccCCC--CCccEEecccCCCceEeccCCCcccccccccccCccEEEEecCCCCeecccCCCCcchh
Q 045021          106 ILKIWSCHSLPYIARVQLP--PSLKRLDISHCDNIRTLTVEDGIQSSSRRYTSYLLEKLEIWDCPSLTCIFSKNELPATL  183 (461)
Q Consensus       106 ~L~l~~~~~l~~~~~~~~~--~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~  183 (461)
                      +||++. +.+++++....+  .++++|+++++. ++.+.  .+-..     ++.+|..|.++. ++++. +|.-.|... 
T Consensus       153 slDLSr-N~is~i~~~sfp~~~ni~~L~La~N~-It~l~--~~~F~-----~lnsL~tlkLsr-Nritt-Lp~r~Fk~L-  220 (873)
T KOG4194|consen  153 SLDLSR-NLISEIPKPSFPAKVNIKKLNLASNR-ITTLE--TGHFD-----SLNSLLTLKLSR-NRITT-LPQRSFKRL-  220 (873)
T ss_pred             hhhhhh-chhhcccCCCCCCCCCceEEeecccc-ccccc--ccccc-----ccchheeeeccc-Ccccc-cCHHHhhhc-
Confidence            666655 344444443221  345555555532 33222  21111     122344555555 44444 333222211 


Q ss_pred             hhcccCCCCCCccEEEEecCCchhhh-HHhhcCCCccceeeccccccceecccccCCCCCccEEEecCCCCCccCCC-CC
Q 045021          184 ESLEVGNQPPSLKSLNVWSCSKLESI-AERLDNNTSLEMISILWCENLKFLPSGLHNLRQLQEIQLWGCENLVSFPE-GG  261 (461)
Q Consensus       184 ~~~~~~~~~~~L~~L~l~~~~~l~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~-~~  261 (461)
                               ++|+.|++.++ .+..+ ...+..+++|+.|.+..|..-+--...|-.+.++++|++..| .+..+.. -.
T Consensus       221 ---------~~L~~LdLnrN-~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N-~l~~vn~g~l  289 (873)
T KOG4194|consen  221 ---------PKLESLDLNRN-RIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETN-RLQAVNEGWL  289 (873)
T ss_pred             ---------chhhhhhcccc-ceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccc-hhhhhhcccc
Confidence                     44555555542 22221 224455555555555544222222234444555555555554 3333332 22


Q ss_pred             CCCCCcceEeeccCccccccccccCCCCCccEEEecc-cCCCcCCCC--CCCCcceEEeecCchhhHHhhhhcccCCCCc
Q 045021          262 LPCAKLSKLGIYRCERLEALPKGLHNLKSLKKLRIGG-KLPSLEEDG--LPTNLHFLKIERNMEIWKSMIERGFHKFSSL  338 (461)
Q Consensus       262 ~~~~~L~~L~l~~c~~~~~~~~~~~~l~~L~~L~l~~-~~~~l~~~~--~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L  338 (461)
                      ..++.|+.|+++.+..-..-+.+.+.+++|+.|++++ .+..++...  .+..|++|.++.|. ++ ......+..+++|
T Consensus       290 fgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Ns-i~-~l~e~af~~lssL  367 (873)
T KOG4194|consen  290 FGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNS-ID-HLAEGAFVGLSSL  367 (873)
T ss_pred             cccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccc-hH-HHHhhHHHHhhhh
Confidence            3344555555555322222233444455555555555 555554442  23455555555554 22 2222234455555


Q ss_pred             CEEEEecCCCcccccCccccccCCCCCCCCCcceeecCCCCCCcccc-cchhhccCCcEEEecCCCCCcccCCCCC-ccc
Q 045021          339 RHLTIEGCDDDMVSFPPEDRRLGTTLPLPASLASLTIGDFPNLERLS-SSIVDLQNLKYLKLYDCPKLKYFSEKGL-PSS  416 (461)
Q Consensus       339 ~~L~l~~~~~~~~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~-~~~~~~~~L~~L~l~~C~~l~~~~~~~~-~~~  416 (461)
                      ++|++++|  .+.-.-+++-+   ....+++|++|++.| ++++.|+ ..+.++++|++|++.+ +-|.++..+.+ +-.
T Consensus       368 ~~LdLr~N--~ls~~IEDaa~---~f~gl~~LrkL~l~g-Nqlk~I~krAfsgl~~LE~LdL~~-NaiaSIq~nAFe~m~  440 (873)
T KOG4194|consen  368 HKLDLRSN--ELSWCIEDAAV---AFNGLPSLRKLRLTG-NQLKSIPKRAFSGLEALEHLDLGD-NAIASIQPNAFEPME  440 (873)
T ss_pred             hhhcCcCC--eEEEEEecchh---hhccchhhhheeecC-ceeeecchhhhccCcccceecCCC-Ccceeecccccccch
Confidence            55555554  22211111000   001345555555555 4555555 3445555555555555 55555444322 234


Q ss_pred             ccEeecc
Q 045021          417 LLRLYID  423 (461)
Q Consensus       417 L~~L~i~  423 (461)
                      |++|.++
T Consensus       441 Lk~Lv~n  447 (873)
T KOG4194|consen  441 LKELVMN  447 (873)
T ss_pred             hhhhhhc
Confidence            4444443

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.90  E-value=2.3e-24  Score=202.38  Aligned_cols=361  Identities=16%  Similarity=0.239  Sum_probs=273.5

Q ss_pred             CCcCEEEecCCcCcccccC--CCCCCCccEEEEeecCCccccCcccccCCCCcccEEEeeCCCCCcccccc--CCCCCcc
Q 045021           53 SSLREIEICRCHSLVSFPE--VALPSKLKKIEIRECDALKSLPEAWMCGTNSSLEILKIWSCHSLPYIARV--QLPPSLK  128 (461)
Q Consensus        53 ~~L~~L~l~~~~~l~~~~~--~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~--~~~~~L~  128 (461)
                      +.-+.|+++++ ++.++..  +..+++|+++++..+. ++.+|......  .+|+.|++.+ +.++.+...  ..++.|+
T Consensus        78 ~~t~~LdlsnN-kl~~id~~~f~nl~nLq~v~l~~N~-Lt~IP~f~~~s--ghl~~L~L~~-N~I~sv~se~L~~l~alr  152 (873)
T KOG4194|consen   78 SQTQTLDLSNN-KLSHIDFEFFYNLPNLQEVNLNKNE-LTRIPRFGHES--GHLEKLDLRH-NLISSVTSEELSALPALR  152 (873)
T ss_pred             cceeeeecccc-ccccCcHHHHhcCCcceeeeeccch-hhhcccccccc--cceeEEeeec-cccccccHHHHHhHhhhh
Confidence            45677999996 6665544  7889999999999965 88998776665  7899999988 566655443  6778999


Q ss_pred             EEecccCCCceEeccCCCcccccccccccCccEEEEecCCCCeecccCCCCcchhhhcccCCCCCCccEEEEecCCchhh
Q 045021          129 RLDISHCDNIRTLTVEDGIQSSSRRYTSYLLEKLEIWDCPSLTCIFSKNELPATLESLEVGNQPPSLKSLNVWSCSKLES  208 (461)
Q Consensus       129 ~L~l~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~  208 (461)
                      +|+++.+. +..++  ..-..     ..+++++|++.+ +.++. +..+.|...          .+|..|.+++ +.++.
T Consensus       153 slDLSrN~-is~i~--~~sfp-----~~~ni~~L~La~-N~It~-l~~~~F~~l----------nsL~tlkLsr-Nritt  211 (873)
T KOG4194|consen  153 SLDLSRNL-ISEIP--KPSFP-----AKVNIKKLNLAS-NRITT-LETGHFDSL----------NSLLTLKLSR-NRITT  211 (873)
T ss_pred             hhhhhhch-hhccc--CCCCC-----CCCCceEEeecc-ccccc-ccccccccc----------chheeeeccc-Ccccc
Confidence            99999854 55554  22111     135799999999 99998 777766654          5799999999 46666


Q ss_pred             hHH-hhcCCCccceeeccccccceec-ccccCCCCCccEEEecCCCCCccCCC-CCCCCCCcceEeeccCcccccc-ccc
Q 045021          209 IAE-RLDNNTSLEMISILWCENLKFL-PSGLHNLRQLQEIQLWGCENLVSFPE-GGLPCAKLSKLGIYRCERLEAL-PKG  284 (461)
Q Consensus       209 ~~~-~~~~l~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~c~~~~~~-~~~  284 (461)
                      +|. .++++++|+.|++..| .++.. .-.|.++++|+.|.+..| .+..+.. .+..+.++++|++..+ +++.+ ..+
T Consensus       212 Lp~r~Fk~L~~L~~LdLnrN-~irive~ltFqgL~Sl~nlklqrN-~I~kL~DG~Fy~l~kme~l~L~~N-~l~~vn~g~  288 (873)
T KOG4194|consen  212 LPQRSFKRLPKLESLDLNRN-RIRIVEGLTFQGLPSLQNLKLQRN-DISKLDDGAFYGLEKMEHLNLETN-RLQAVNEGW  288 (873)
T ss_pred             cCHHHhhhcchhhhhhcccc-ceeeehhhhhcCchhhhhhhhhhc-CcccccCcceeeecccceeecccc-hhhhhhccc
Confidence            665 7888999999999886 55544 456888999999999997 5666665 4455779999999985 45444 347


Q ss_pred             cCCCCCccEEEecc-cCCCcCCC--CCCCCcceEEeecCchhhHHhhhhcccCCCCcCEEEEecCCCcccccCccccccC
Q 045021          285 LHNLKSLKKLRIGG-KLPSLEED--GLPTNLHFLKIERNMEIWKSMIERGFHKFSSLRHLTIEGCDDDMVSFPPEDRRLG  361 (461)
Q Consensus       285 ~~~l~~L~~L~l~~-~~~~l~~~--~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~i~~~~~~~~  361 (461)
                      +.++++|+.|++++ .++.+...  .++++|+.|++++|. ++ ..+...+..+..|++|.+++|  ++..+.+.++   
T Consensus       289 lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~-i~-~l~~~sf~~L~~Le~LnLs~N--si~~l~e~af---  361 (873)
T KOG4194|consen  289 LFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNR-IT-RLDEGSFRVLSQLEELNLSHN--SIDHLAEGAF---  361 (873)
T ss_pred             ccccchhhhhccchhhhheeecchhhhcccceeEeccccc-cc-cCChhHHHHHHHhhhhccccc--chHHHHhhHH---
Confidence            88999999999999 88777765  567999999999998 33 344556888999999999998  8888888766   


Q ss_pred             CCCCCCCCcceeecCCCCCCcc----cccchhhccCCcEEEecCCCCCcccCCCCC--cccccEeeccCCchhHHhhccc
Q 045021          362 TTLPLPASLASLTIGDFPNLER----LSSSIVDLQNLKYLKLYDCPKLKYFSEKGL--PSSLLRLYIDECPLIEEKCRKD  435 (461)
Q Consensus       362 ~~~~~~~~L~~L~l~~~~~l~~----i~~~~~~~~~L~~L~l~~C~~l~~~~~~~~--~~~L~~L~i~~c~~l~~~~~~~  435 (461)
                         ..+.+|++||++. +.+..    -...+..+++|+.|.+.| +++++++...+  ++.|++|++.+++....+    
T Consensus       362 ---~~lssL~~LdLr~-N~ls~~IEDaa~~f~gl~~LrkL~l~g-Nqlk~I~krAfsgl~~LE~LdL~~NaiaSIq----  432 (873)
T KOG4194|consen  362 ---VGLSSLHKLDLRS-NELSWCIEDAAVAFNGLPSLRKLRLTG-NQLKSIPKRAFSGLEALEHLDLGDNAIASIQ----  432 (873)
T ss_pred             ---HHhhhhhhhcCcC-CeEEEEEecchhhhccchhhhheeecC-ceeeecchhhhccCcccceecCCCCcceeec----
Confidence               4778999999998 56532    225577899999999999 99999988544  699999999998755433    


Q ss_pred             CccccccccccceEEEcccEEecCC
Q 045021          436 GEQYWDLLTHIPRVRIHLPVVFDDS  460 (461)
Q Consensus       436 ~~~~~~~~~~~~~~~~~~~~~~~~~  460 (461)
                       ...+.+. +++.+.+....+-|||
T Consensus       433 -~nAFe~m-~Lk~Lv~nSssflCDC  455 (873)
T KOG4194|consen  433 -PNAFEPM-ELKELVMNSSSFLCDC  455 (873)
T ss_pred             -ccccccc-hhhhhhhcccceEEec
Confidence             2233333 5555555555555544

>PLN03210 Resistant to P

Probab=99.89  E-value=2.8e-22  Score=217.89  Aligned_cols=284  Identities=22%  Similarity=0.335  Sum_probs=144.6

Q ss_pred             CCccEEEecCCcCCccccccCCCCCCcCEEEecCCcCcccccCCCCCCCccEEEEeecCCccccCcccccCCCCcccEEE
Q 045021           29 CRLEYLILRYCKGLVKLPQSSLSLSSLREIEICRCHSLVSFPEVALPSKLKKIEIRECDALKSLPEAWMCGTNSSLEILK  108 (461)
Q Consensus        29 ~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~  108 (461)
                      .+|++|++.+ ..+..+|..+..+++|++|+++++..+..+|.++.+++|+.|++++|..+..+|..+...  ++|+.|+
T Consensus       611 ~~L~~L~L~~-s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si~~L--~~L~~L~  687 (1153)
T PLN03210        611 ENLVKLQMQG-SKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSIQYL--NKLEDLD  687 (1153)
T ss_pred             cCCcEEECcC-ccccccccccccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccchhhhcc--CCCCEEe
Confidence            3444444444 223444444445555555555554444445545555555555555555555555444433  5555555


Q ss_pred             eeCCCCCccccccCCCCCccEEecccCCCceEeccCCCcccccccccccCccEEEEecCCCCeecccCCCCcchhhhccc
Q 045021          109 IWSCHSLPYIARVQLPPSLKRLDISHCDNIRTLTVEDGIQSSSRRYTSYLLEKLEIWDCPSLTCIFSKNELPATLESLEV  188 (461)
Q Consensus       109 l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~  188 (461)
                      +++|+.++.+|....+++|+.|++++|..+..+|  ...         .+|+.|++++ +.+.. +|...-         
T Consensus       688 L~~c~~L~~Lp~~i~l~sL~~L~Lsgc~~L~~~p--~~~---------~nL~~L~L~~-n~i~~-lP~~~~---------  745 (1153)
T PLN03210        688 MSRCENLEILPTGINLKSLYRLNLSGCSRLKSFP--DIS---------TNISWLDLDE-TAIEE-FPSNLR---------  745 (1153)
T ss_pred             CCCCCCcCccCCcCCCCCCCEEeCCCCCCccccc--ccc---------CCcCeeecCC-Ccccc-cccccc---------
Confidence            5555555555444444555555555554444443  211         1355555554 33333 322210         


Q ss_pred             CCCCCCccEEEEecCCchh------hh-HHhhcCCCccceeeccccccceecccccCCCCCccEEEecCCCCCccCCCCC
Q 045021          189 GNQPPSLKSLNVWSCSKLE------SI-AERLDNNTSLEMISILWCENLKFLPSGLHNLRQLQEIQLWGCENLVSFPEGG  261 (461)
Q Consensus       189 ~~~~~~L~~L~l~~~~~l~------~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~  261 (461)
                         +++|+.|.+.++....      .+ +.....+++|+.|++++|..+..+|.+++++++|+.|++++|..++.+|...
T Consensus       746 ---l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~  822 (1153)
T PLN03210        746 ---LENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI  822 (1153)
T ss_pred             ---ccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC
Confidence               1334444444321110      00 0011223566666666666666666666666666666666666666665543


Q ss_pred             CCCCCcceEeeccCccccccccccCCCCCccEEEecc-cCCCcCCC-CCCCCcceEEeecCchhhHHhhhhcccCCCCcC
Q 045021          262 LPCAKLSKLGIYRCERLEALPKGLHNLKSLKKLRIGG-KLPSLEED-GLPTNLHFLKIERNMEIWKSMIERGFHKFSSLR  339 (461)
Q Consensus       262 ~~~~~L~~L~l~~c~~~~~~~~~~~~l~~L~~L~l~~-~~~~l~~~-~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~  339 (461)
                       .+++|+.|++++|..+..+|.   ..++|++|++++ .+..+|.. ..+++|++|++++|..+.....  ....+++|+
T Consensus       823 -~L~sL~~L~Ls~c~~L~~~p~---~~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~--~~~~L~~L~  896 (1153)
T PLN03210        823 -NLESLESLDLSGCSRLRTFPD---ISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSL--NISKLKHLE  896 (1153)
T ss_pred             -CccccCEEECCCCCccccccc---cccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccCc--ccccccCCC
Confidence             345666666666666665543   234566666666 55555543 4455666666666665553222  234556666


Q ss_pred             EEEEecC
Q 045021          340 HLTIEGC  346 (461)
Q Consensus       340 ~L~l~~~  346 (461)
                      .+++++|
T Consensus       897 ~L~l~~C  903 (1153)
T PLN03210        897 TVDFSDC  903 (1153)
T ss_pred             eeecCCC
Confidence            6666665

syringae 6; Provisional

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.84  E-value=2.4e-23  Score=197.14  Aligned_cols=344  Identities=20%  Similarity=0.272  Sum_probs=205.4

Q ss_pred             hhhhhhhhhhhcCCccEEEecCCcCCccccccCCCCCCcCEEEecCCcCcccccC-CCCCCCccEEEEeecCCcc--ccC
Q 045021           17 EKDQQQQLCELSCRLEYLILRYCKGLVKLPQSSLSLSSLREIEICRCHSLVSFPE-VALPSKLKKIEIRECDALK--SLP   93 (461)
Q Consensus        17 ~~~~l~~l~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~-~~~l~~L~~L~l~~~~~l~--~~~   93 (461)
                      |...+.++    .+++-|.|.. .++..+|+.++.+.+|++|.+.++ .+.++.. +..++.|+.+.+..+. ++  -+|
T Consensus        24 FP~~v~qM----t~~~WLkLnr-t~L~~vPeEL~~lqkLEHLs~~HN-~L~~vhGELs~Lp~LRsv~~R~N~-LKnsGiP   96 (1255)
T KOG0444|consen   24 FPHDVEQM----TQMTWLKLNR-TKLEQVPEELSRLQKLEHLSMAHN-QLISVHGELSDLPRLRSVIVRDNN-LKNSGIP   96 (1255)
T ss_pred             CchhHHHh----hheeEEEech-hhhhhChHHHHHHhhhhhhhhhhh-hhHhhhhhhccchhhHHHhhhccc-cccCCCC
Confidence            33556666    7888888877 667777887888888888888875 4444433 6777788888777644 43  367


Q ss_pred             cccccCCCCcccEEEeeCCCCCcccccc-CCCCCccEEecccCCCceEeccCCCcccccccccccCccEEEEecCCCCee
Q 045021           94 EAWMCGTNSSLEILKIWSCHSLPYIARV-QLPPSLKRLDISHCDNIRTLTVEDGIQSSSRRYTSYLLEKLEIWDCPSLTC  172 (461)
Q Consensus        94 ~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~  172 (461)
                      .+++..  ..|+.|++++ ++++..|.. ....++-+|+++++ +++.+|  ..+.-        +|.            
T Consensus        97 ~diF~l--~dLt~lDLSh-NqL~EvP~~LE~AKn~iVLNLS~N-~IetIP--n~lfi--------nLt------------  150 (1255)
T KOG0444|consen   97 TDIFRL--KDLTILDLSH-NQLREVPTNLEYAKNSIVLNLSYN-NIETIP--NSLFI--------NLT------------  150 (1255)
T ss_pred             chhccc--ccceeeecch-hhhhhcchhhhhhcCcEEEEcccC-ccccCC--chHHH--------hhH------------
Confidence            777766  7778888877 566666654 45566667777763 355666  43321        111            


Q ss_pred             cccCCCCcchhhhcccCCCCCCccEEEEecCCchhhhHHhhcCCCccceeeccccccceecccccCCCCCccEEEecCCC
Q 045021          173 IFSKNELPATLESLEVGNQPPSLKSLNVWSCSKLESIAERLDNNTSLEMISILWCENLKFLPSGLHNLRQLQEIQLWGCE  252 (461)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~  252 (461)
                                           -|-.|++++ +.++.+|.-+.++..|++|.+++++-.-.--..+..+.+|+.|.+++..
T Consensus       151 ---------------------DLLfLDLS~-NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~Tq  208 (1255)
T KOG0444|consen  151 ---------------------DLLFLDLSN-NRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQ  208 (1255)
T ss_pred             ---------------------hHhhhcccc-chhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhccccc
Confidence                                 144444444 3444444445555555555555554221101122334555555555432


Q ss_pred             C-CccCCCCCCCCCCcceEeeccCccccccccccCCCCCccEEEecc-cCCCcCCC-CCCCCcceEEeecCchhhHHhhh
Q 045021          253 N-LVSFPEGGLPCAKLSKLGIYRCERLEALPKGLHNLKSLKKLRIGG-KLPSLEED-GLPTNLHFLKIERNMEIWKSMIE  329 (461)
Q Consensus       253 ~-l~~l~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~l~~L~~L~l~~-~~~~l~~~-~~~~~L~~L~l~~~~~l~~~~~~  329 (461)
                      . +.++|...-.+.+|..++++. +++..+|..+..+++|+.|++++ .++.+... +.-.+|++|+++.|. ++ ..+ 
T Consensus       209 RTl~N~Ptsld~l~NL~dvDlS~-N~Lp~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQ-Lt-~LP-  284 (1255)
T KOG0444|consen  209 RTLDNIPTSLDDLHNLRDVDLSE-NNLPIVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQ-LT-VLP-  284 (1255)
T ss_pred             chhhcCCCchhhhhhhhhccccc-cCCCcchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccch-hc-cch-
Confidence            2 334555444445666666654 45555666666666666666666 44443322 222466777777665 22 111 


Q ss_pred             hcccCCCCcCEEEEecCCCcccccCccccccCCCCCCCCCcceeecCCCCCCcccccchhhccCCcEEEecCCCCCcccC
Q 045021          330 RGFHKFSSLRHLTIEGCDDDMVSFPPEDRRLGTTLPLPASLASLTIGDFPNLERLSSSIVDLQNLKYLKLYDCPKLKYFS  409 (461)
Q Consensus       330 ~~~~~l~~L~~L~l~~~~~~~~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~L~~L~l~~C~~l~~~~  409 (461)
                      ..+-.++.|+.|.+.+|...++-||.+ +|      .+.+|+.+...+ +.++-+|+++.+|..|+.|.+.. +.+-.+|
T Consensus       285 ~avcKL~kL~kLy~n~NkL~FeGiPSG-IG------KL~~Levf~aan-N~LElVPEglcRC~kL~kL~L~~-NrLiTLP  355 (1255)
T KOG0444|consen  285 DAVCKLTKLTKLYANNNKLTFEGIPSG-IG------KLIQLEVFHAAN-NKLELVPEGLCRCVKLQKLKLDH-NRLITLP  355 (1255)
T ss_pred             HHHhhhHHHHHHHhccCcccccCCccc-hh------hhhhhHHHHhhc-cccccCchhhhhhHHHHHhcccc-cceeech
Confidence            135566777777777765556667766 54      556677777776 57777777777777777777765 6666666


Q ss_pred             CC-CCcccccEeeccCCchh
Q 045021          410 EK-GLPSSLLRLYIDECPLI  428 (461)
Q Consensus       410 ~~-~~~~~L~~L~i~~c~~l  428 (461)
                      .. .+++.|+.|++..+|.+
T Consensus       356 eaIHlL~~l~vLDlreNpnL  375 (1255)
T KOG0444|consen  356 EAIHLLPDLKVLDLRENPNL  375 (1255)
T ss_pred             hhhhhcCCcceeeccCCcCc
Confidence            64 45677777777777654

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.82  E-value=4e-22  Score=196.84  Aligned_cols=365  Identities=20%  Similarity=0.200  Sum_probs=184.3

Q ss_pred             hhhhhhhhhhhcCCccEEEecCCcCCccccccCCCCCCcCEEEecCCcCcccccC-CCCCCCccEEEEeecCCccccCcc
Q 045021           17 EKDQQQQLCELSCRLEYLILRYCKGLVKLPQSSLSLSSLREIEICRCHSLVSFPE-VALPSKLKKIEIRECDALKSLPEA   95 (461)
Q Consensus        17 ~~~~l~~l~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~-~~~l~~L~~L~l~~~~~l~~~~~~   95 (461)
                      |-..+..+    ++|+.|++++ +.+...|...+++.+|++|.|.++ .+..+|. +..+.+|+.|+++++. ...+|.-
T Consensus        60 fp~~it~l----~~L~~ln~s~-n~i~~vp~s~~~~~~l~~lnL~~n-~l~~lP~~~~~lknl~~LdlS~N~-f~~~Pl~  132 (1081)
T KOG0618|consen   60 FPIQITLL----SHLRQLNLSR-NYIRSVPSSCSNMRNLQYLNLKNN-RLQSLPASISELKNLQYLDLSFNH-FGPIPLV  132 (1081)
T ss_pred             CCchhhhH----HHHhhcccch-hhHhhCchhhhhhhcchhheeccc-hhhcCchhHHhhhcccccccchhc-cCCCchh
Confidence            33444455    6677777766 555666766777777777777764 5566665 6667777777777743 4444422


Q ss_pred             cccCC-----------------CCcccEEEeeCCCCCccccccCCCCCccE-EecccCC----------CceEeccCCCc
Q 045021           96 WMCGT-----------------NSSLEILKIWSCHSLPYIARVQLPPSLKR-LDISHCD----------NIRTLTVEDGI  147 (461)
Q Consensus        96 ~~~~~-----------------~~~L~~L~l~~~~~l~~~~~~~~~~~L~~-L~l~~~~----------~~~~l~~~~~~  147 (461)
                      +....                 -..++.+++.....-..+...  ...+++ +++.++.          +++.+.  -.-
T Consensus       133 i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~--i~~l~~~ldLr~N~~~~~dls~~~~l~~l~--c~r  208 (1081)
T KOG0618|consen  133 IEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLID--IYNLTHQLDLRYNEMEVLDLSNLANLEVLH--CER  208 (1081)
T ss_pred             HHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcc--hhhhheeeecccchhhhhhhhhccchhhhh--hhh
Confidence            21110                 011222222221111111111  011222 3443322          222111  000


Q ss_pred             cc-ccccccccCccEEEEecCCCCeecccCCCCcchhhhcccCCCCCCccEEEEecCCchhhhHHhhcCCCccceeeccc
Q 045021          148 QS-SSRRYTSYLLEKLEIWDCPSLTCIFSKNELPATLESLEVGNQPPSLKSLNVWSCSKLESIAERLDNNTSLEMISILW  226 (461)
Q Consensus       148 ~~-~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~  226 (461)
                      .. +.-....++++.|..+. +.+.. ....            -.+.+|++++++. ..+..+|+++..+.+|+.+....
T Consensus       209 n~ls~l~~~g~~l~~L~a~~-n~l~~-~~~~------------p~p~nl~~~dis~-n~l~~lp~wi~~~~nle~l~~n~  273 (1081)
T KOG0618|consen  209 NQLSELEISGPSLTALYADH-NPLTT-LDVH------------PVPLNLQYLDISH-NNLSNLPEWIGACANLEALNANH  273 (1081)
T ss_pred             cccceEEecCcchheeeecc-Cccee-eccc------------cccccceeeecch-hhhhcchHHHHhcccceEecccc
Confidence            00 00011133444444444 22221 1111            1234688998888 57777888888899999999887


Q ss_pred             cccceecccccCCCCCccEEEecCCCCCccCCCCCCCCCCcceEeeccCcccccccccc-CCCC-CccEEEecc-cCCCc
Q 045021          227 CENLKFLPSGLHNLRQLQEIQLWGCENLVSFPEGGLPCAKLSKLGIYRCERLEALPKGL-HNLK-SLKKLRIGG-KLPSL  303 (461)
Q Consensus       227 ~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~~~~~~~~~-~~l~-~L~~L~l~~-~~~~l  303 (461)
                      + .+..+|..+....+|+.|.+..| .++.++....+.++|++|++.. +.+..+|..+ .... +|+.|..+. .+...
T Consensus       274 N-~l~~lp~ri~~~~~L~~l~~~~n-el~yip~~le~~~sL~tLdL~~-N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~l  350 (1081)
T KOG0618|consen  274 N-RLVALPLRISRITSLVSLSAAYN-ELEYIPPFLEGLKSLRTLDLQS-NNLPSLPDNFLAVLNASLNTLNVSSNKLSTL  350 (1081)
T ss_pred             h-hHHhhHHHHhhhhhHHHHHhhhh-hhhhCCCcccccceeeeeeehh-ccccccchHHHhhhhHHHHHHhhhhcccccc
Confidence            6 44666666666778888888876 6777787777777888888887 3555555522 1111 234444433 33333


Q ss_pred             CCC--CCCCCcceEEeecCchhhHHhhhhcccCCCCcCEEEEecCCCcccccCccccccCCCCCCCCCcceeecCCCCCC
Q 045021          304 EED--GLPTNLHFLKIERNMEIWKSMIERGFHKFSSLRHLTIEGCDDDMVSFPPEDRRLGTTLPLPASLASLTIGDFPNL  381 (461)
Q Consensus       304 ~~~--~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l  381 (461)
                      +..  ...+.|+.|.+.+|. +++.... .+.++++|+.|++++|  ++..||....      ..++.|++|+++| +++
T Consensus       351 p~~~e~~~~~Lq~LylanN~-Ltd~c~p-~l~~~~hLKVLhLsyN--rL~~fpas~~------~kle~LeeL~LSG-NkL  419 (1081)
T KOG0618|consen  351 PSYEENNHAALQELYLANNH-LTDSCFP-VLVNFKHLKVLHLSYN--RLNSFPASKL------RKLEELEELNLSG-NKL  419 (1081)
T ss_pred             ccccchhhHHHHHHHHhcCc-ccccchh-hhccccceeeeeeccc--ccccCCHHHH------hchHHhHHHhccc-chh
Confidence            322  223445555555554 2222211 2445555666666655  5555555422      2344555555555 455


Q ss_pred             cccccchhhccCCcEEEecCCCCCcccCCCCCcccccEeec
Q 045021          382 ERLSSSIVDLQNLKYLKLYDCPKLKYFSEKGLPSSLLRLYI  422 (461)
Q Consensus       382 ~~i~~~~~~~~~L~~L~l~~C~~l~~~~~~~~~~~L~~L~i  422 (461)
                      +.+|..+..++.|++|...+ ++|..+|+....+.|+.+|+
T Consensus       420 ~~Lp~tva~~~~L~tL~ahs-N~l~~fPe~~~l~qL~~lDl  459 (1081)
T KOG0618|consen  420 TTLPDTVANLGRLHTLRAHS-NQLLSFPELAQLPQLKVLDL  459 (1081)
T ss_pred             hhhhHHHHhhhhhHHHhhcC-CceeechhhhhcCcceEEec
Confidence            55554444444444444443 44444443222344444444

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.79  E-value=4.9e-22  Score=188.34  Aligned_cols=320  Identities=21%  Similarity=0.322  Sum_probs=250.5

Q ss_pred             hhhhhhhhcCCccEEEecCCcCCccccccCCCCCCcCEEEecCCcCcc--cccC-CCCCCCccEEEEeecCCccccCccc
Q 045021           20 QQQQLCELSCRLEYLILRYCKGLVKLPQSSLSLSSLREIEICRCHSLV--SFPE-VALPSKLKKIEIRECDALKSLPEAW   96 (461)
Q Consensus        20 ~l~~l~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~--~~~~-~~~l~~L~~L~l~~~~~l~~~~~~~   96 (461)
                      .++++    ++|++|.+++ +++..+-+.+..+|.|+.++++.+ .++  .+|. +..+..|..|+++.+. ++..|...
T Consensus        50 EL~~l----qkLEHLs~~H-N~L~~vhGELs~Lp~LRsv~~R~N-~LKnsGiP~diF~l~dLt~lDLShNq-L~EvP~~L  122 (1255)
T KOG0444|consen   50 ELSRL----QKLEHLSMAH-NQLISVHGELSDLPRLRSVIVRDN-NLKNSGIPTDIFRLKDLTILDLSHNQ-LREVPTNL  122 (1255)
T ss_pred             HHHHH----hhhhhhhhhh-hhhHhhhhhhccchhhHHHhhhcc-ccccCCCCchhcccccceeeecchhh-hhhcchhh
Confidence            47777    8999999988 566777777888899999999885 343  5666 8888999999999955 88888776


Q ss_pred             ccCCCCcccEEEeeCCCCCcccccc--CCCCCccEEecccCCCceEeccCCCcccccccccccCccEEEEecCCCCeecc
Q 045021           97 MCGTNSSLEILKIWSCHSLPYIARV--QLPPSLKRLDISHCDNIRTLTVEDGIQSSSRRYTSYLLEKLEIWDCPSLTCIF  174 (461)
Q Consensus        97 ~~~~~~~L~~L~l~~~~~l~~~~~~--~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~  174 (461)
                      -..  .++-.|++++ +++..+|..  .+++.|-.|+++++. ++.+|  .-+..      +..|+.|++++ +-+.. +
T Consensus       123 E~A--Kn~iVLNLS~-N~IetIPn~lfinLtDLLfLDLS~Nr-Le~LP--PQ~RR------L~~LqtL~Ls~-NPL~h-f  188 (1255)
T KOG0444|consen  123 EYA--KNSIVLNLSY-NNIETIPNSLFINLTDLLFLDLSNNR-LEMLP--PQIRR------LSMLQTLKLSN-NPLNH-F  188 (1255)
T ss_pred             hhh--cCcEEEEccc-CccccCCchHHHhhHhHhhhccccch-hhhcC--HHHHH------HhhhhhhhcCC-ChhhH-H
Confidence            655  7888899988 577777765  667788888998854 77777  65555      55788888888 55554 5


Q ss_pred             cCCCCcchhhhcccCCCCCCccEEEEecC-CchhhhHHhhcCCCccceeeccccccceecccccCCCCCccEEEecCCCC
Q 045021          175 SKNELPATLESLEVGNQPPSLKSLNVWSC-SKLESIAERLDNNTSLEMISILWCENLKFLPSGLHNLRQLQEIQLWGCEN  253 (461)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~  253 (461)
                      ..-.+|+.          +.|+.|.+++. ..+..+|..+..+.+|..++++.+ .+..+|+.+-++++|+.|++++| .
T Consensus       189 QLrQLPsm----------tsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N-~Lp~vPecly~l~~LrrLNLS~N-~  256 (1255)
T KOG0444|consen  189 QLRQLPSM----------TSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSEN-NLPIVPECLYKLRNLRRLNLSGN-K  256 (1255)
T ss_pred             HHhcCccc----------hhhhhhhcccccchhhcCCCchhhhhhhhhcccccc-CCCcchHHHhhhhhhheeccCcC-c
Confidence            55555555          56888888764 234566778888999999999975 77888998989999999999997 6


Q ss_pred             CccCCCCCCCCCCcceEeeccCccccccccccCCCCCccEEEecc---cCCCcCCC-CCCCCcceEEeecCchhhHHhhh
Q 045021          254 LVSFPEGGLPCAKLSKLGIYRCERLEALPKGLHNLKSLKKLRIGG---KLPSLEED-GLPTNLHFLKIERNMEIWKSMIE  329 (461)
Q Consensus       254 l~~l~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~l~~L~~L~l~~---~~~~l~~~-~~~~~L~~L~l~~~~~l~~~~~~  329 (461)
                      ++.+......+.+|++|+++. ++++.+|..+-.+++|+.|.+.+   ....+|.+ +.+.+|+.+...+|. ++  ...
T Consensus       257 iteL~~~~~~W~~lEtLNlSr-NQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~-LE--lVP  332 (1255)
T KOG0444|consen  257 ITELNMTEGEWENLETLNLSR-NQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNK-LE--LVP  332 (1255)
T ss_pred             eeeeeccHHHHhhhhhhcccc-chhccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccc-cc--cCc
Confidence            677666555566899999998 57889999999999999999888   66788876 777789999888876 33  223


Q ss_pred             hcccCCCCcCEEEEecCCCcccccCccccccCCCCCCCCCcceeecCCCCCCcccc
Q 045021          330 RGFHKFSSLRHLTIEGCDDDMVSFPPEDRRLGTTLPLPASLASLTIGDFPNLERLS  385 (461)
Q Consensus       330 ~~~~~l~~L~~L~l~~~~~~~~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~  385 (461)
                      .++.+++.|+.|.+++|  ++..+|+. +      ..++.|+.||+.+.+++-.-|
T Consensus       333 EglcRC~kL~kL~L~~N--rLiTLPea-I------HlL~~l~vLDlreNpnLVMPP  379 (1255)
T KOG0444|consen  333 EGLCRCVKLQKLKLDHN--RLITLPEA-I------HLLPDLKVLDLRENPNLVMPP  379 (1255)
T ss_pred             hhhhhhHHHHHhccccc--ceeechhh-h------hhcCCcceeeccCCcCccCCC
Confidence            36788999999999987  88889887 5      478899999999988876554

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.77  E-value=4.2e-22  Score=179.46  Aligned_cols=353  Identities=20%  Similarity=0.225  Sum_probs=188.7

Q ss_pred             CCccEEEecCCcCCccccccCCCCCCcCEEEecCCcCcccccC-CCCCCCccEEEEeec---------------------
Q 045021           29 CRLEYLILRYCKGLVKLPQSSLSLSSLREIEICRCHSLVSFPE-VALPSKLKKIEIREC---------------------   86 (461)
Q Consensus        29 ~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~-~~~l~~L~~L~l~~~---------------------   86 (461)
                      +.+++|++.+ +++..+|..++.+..++.|+++.+ ++..+|+ ++...+|++++++.+                     
T Consensus        68 ~~l~vl~~~~-n~l~~lp~aig~l~~l~~l~vs~n-~ls~lp~~i~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~  145 (565)
T KOG0472|consen   68 ACLTVLNVHD-NKLSQLPAAIGELEALKSLNVSHN-KLSELPEQIGSLISLVKLDCSSNELKELPDSIGRLLDLEDLDAT  145 (565)
T ss_pred             cceeEEEecc-chhhhCCHHHHHHHHHHHhhcccc-hHhhccHHHhhhhhhhhhhccccceeecCchHHHHhhhhhhhcc
Confidence            5555565555 334455554555444555554443 3333444 444444444444442                     


Q ss_pred             -CCccccCcccccCCCCcccEEEeeCCCCCcccccc-CCCCCccEEecccCCCceEeccCCCcccccccccccCccEEEE
Q 045021           87 -DALKSLPEAWMCGTNSSLEILKIWSCHSLPYIARV-QLPPSLKRLDISHCDNIRTLTVEDGIQSSSRRYTSYLLEKLEI  164 (461)
Q Consensus        87 -~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~l  164 (461)
                       ..+.++|++++..  .+|..+++.+ +.++..++. ..+..|++++..... ++.+|  ..++.      +.+|+.|++
T Consensus       146 ~N~i~slp~~~~~~--~~l~~l~~~~-n~l~~l~~~~i~m~~L~~ld~~~N~-L~tlP--~~lg~------l~~L~~LyL  213 (565)
T KOG0472|consen  146 NNQISSLPEDMVNL--SKLSKLDLEG-NKLKALPENHIAMKRLKHLDCNSNL-LETLP--PELGG------LESLELLYL  213 (565)
T ss_pred             ccccccCchHHHHH--HHHHHhhccc-cchhhCCHHHHHHHHHHhcccchhh-hhcCC--hhhcc------hhhhHHHHh
Confidence             2355555555444  5566666655 344444333 335667777766533 56677  66665      456777777


Q ss_pred             ecCCCCeecccCCCCcchhhhcccCCCCCCccEEEEecCCchhhhHH-hhcCCCccceeeccccccceecccccCCCCCc
Q 045021          165 WDCPSLTCIFSKNELPATLESLEVGNQPPSLKSLNVWSCSKLESIAE-RLDNNTSLEMISILWCENLKFLPSGLHNLRQL  243 (461)
Q Consensus       165 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L  243 (461)
                      .. ++++. .|...-.            ..|+++.+.. ..++.++. ....+.++..|++..+ +++++|..+..+.+|
T Consensus       214 ~~-Nki~~-lPef~gc------------s~L~Elh~g~-N~i~~lpae~~~~L~~l~vLDLRdN-klke~Pde~clLrsL  277 (565)
T KOG0472|consen  214 RR-NKIRF-LPEFPGC------------SLLKELHVGE-NQIEMLPAEHLKHLNSLLVLDLRDN-KLKEVPDEICLLRSL  277 (565)
T ss_pred             hh-ccccc-CCCCCcc------------HHHHHHHhcc-cHHHhhHHHHhcccccceeeecccc-ccccCchHHHHhhhh
Confidence            77 77776 5522222            2366666665 45555554 3346777777777764 667777767677777


Q ss_pred             cEEEecCCCCCccCCCCCCCCCCcceEeeccCcccc-------------------------------------cccc---
Q 045021          244 QEIQLWGCENLVSFPEGGLPCAKLSKLGIYRCERLE-------------------------------------ALPK---  283 (461)
Q Consensus       244 ~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~~~-------------------------------------~~~~---  283 (461)
                      ++||+++| .+..+|...+.+ +|++|-+.|++--+                                     ..+.   
T Consensus       278 ~rLDlSNN-~is~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~  355 (565)
T KOG0472|consen  278 ERLDLSNN-DISSLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESF  355 (565)
T ss_pred             hhhcccCC-ccccCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcc
Confidence            77777765 556666655555 66666666642110                                     0000   


Q ss_pred             -ccCCCCCccEEEecc-cCCCcCCCC----CCCCcceEEeecCchhhH---------------------HhhhhcccCCC
Q 045021          284 -GLHNLKSLKKLRIGG-KLPSLEEDG----LPTNLHFLKIERNMEIWK---------------------SMIERGFHKFS  336 (461)
Q Consensus       284 -~~~~l~~L~~L~l~~-~~~~l~~~~----~~~~L~~L~l~~~~~l~~---------------------~~~~~~~~~l~  336 (461)
                       ......+.+.|++++ .+..+|...    .-.-...++++.|...+-                     .+....+..++
T Consensus       356 ~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~  435 (565)
T KOG0472|consen  356 PDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQ  435 (565)
T ss_pred             cchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhh
Confidence             122355677777777 555555321    111133344444431110                     11222355678


Q ss_pred             CcCEEEEecCCCcccccCccccccCCCCCCCCCcceeecCCCCCCcccccchhhccCCcEEEecCCCCCcccCCCCC--c
Q 045021          337 SLRHLTIEGCDDDMVSFPPEDRRLGTTLPLPASLASLTIGDFPNLERLSSSIVDLQNLKYLKLYDCPKLKYFSEKGL--P  414 (461)
Q Consensus       337 ~L~~L~l~~~~~~~~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~L~~L~l~~C~~l~~~~~~~~--~  414 (461)
                      +|..|++++|  -+..+|.+ ++      ....||+|+++. ++.+.+|...-....|+.+..++ +++..+++.++  .
T Consensus       436 kLt~L~L~NN--~Ln~LP~e-~~------~lv~Lq~LnlS~-NrFr~lP~~~y~lq~lEtllas~-nqi~~vd~~~l~nm  504 (565)
T KOG0472|consen  436 KLTFLDLSNN--LLNDLPEE-MG------SLVRLQTLNLSF-NRFRMLPECLYELQTLETLLASN-NQIGSVDPSGLKNM  504 (565)
T ss_pred             cceeeecccc--hhhhcchh-hh------hhhhhheecccc-cccccchHHHhhHHHHHHHHhcc-ccccccChHHhhhh
Confidence            8888888887  67788887 43      555688888887 46666553222223333333333 44444443322  2


Q ss_pred             ccccEeeccC
Q 045021          415 SSLLRLYIDE  424 (461)
Q Consensus       415 ~~L~~L~i~~  424 (461)
                      .+|.+|++++
T Consensus       505 ~nL~tLDL~n  514 (565)
T KOG0472|consen  505 RNLTTLDLQN  514 (565)
T ss_pred             hhcceeccCC
Confidence            3444444443

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.71  E-value=6.6e-21  Score=171.80  Aligned_cols=358  Identities=22%  Similarity=0.266  Sum_probs=205.5

Q ss_pred             hhhhhhhhcCCccEEEecCCcCCccccccCCCCCCcCEEEecCCcCcccccC-CCCCCCccEEEEeecCCccccCccccc
Q 045021           20 QQQQLCELSCRLEYLILRYCKGLVKLPQSSLSLSSLREIEICRCHSLVSFPE-VALPSKLKKIEIRECDALKSLPEAWMC   98 (461)
Q Consensus        20 ~l~~l~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~-~~~l~~L~~L~l~~~~~l~~~~~~~~~   98 (461)
                      ++.++    +.+++|++++ +.+.++++.++.+-.|+.|+-.++ .+.++|+ +..+.+|..+++.++. ++.+|+...+
T Consensus       109 ~i~s~----~~l~~l~~s~-n~~~el~~~i~~~~~l~dl~~~~N-~i~slp~~~~~~~~l~~l~~~~n~-l~~l~~~~i~  181 (565)
T KOG0472|consen  109 QIGSL----ISLVKLDCSS-NELKELPDSIGRLLDLEDLDATNN-QISSLPEDMVNLSKLSKLDLEGNK-LKALPENHIA  181 (565)
T ss_pred             HHhhh----hhhhhhhccc-cceeecCchHHHHhhhhhhhcccc-ccccCchHHHHHHHHHHhhccccc-hhhCCHHHHH
Confidence            46666    7888888887 556778888888888888887775 4555666 7777777777777744 6777766666


Q ss_pred             CCCCcccEEEeeCCCCCcccccc-CCCCCccEEecccCCCceEeccCCCcccccccccccCccEEEEecCCCCeecccCC
Q 045021           99 GTNSSLEILKIWSCHSLPYIARV-QLPPSLKRLDISHCDNIRTLTVEDGIQSSSRRYTSYLLEKLEIWDCPSLTCIFSKN  177 (461)
Q Consensus        99 ~~~~~L~~L~l~~~~~l~~~~~~-~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~  177 (461)
                      +  ..|++++... +.++.+|+. +.+.+|..|++...+ +..+|   .+..      +..|++|+++. +++.. +|.+
T Consensus       182 m--~~L~~ld~~~-N~L~tlP~~lg~l~~L~~LyL~~Nk-i~~lP---ef~g------cs~L~Elh~g~-N~i~~-lpae  246 (565)
T KOG0472|consen  182 M--KRLKHLDCNS-NLLETLPPELGGLESLELLYLRRNK-IRFLP---EFPG------CSLLKELHVGE-NQIEM-LPAE  246 (565)
T ss_pred             H--HHHHhcccch-hhhhcCChhhcchhhhHHHHhhhcc-cccCC---CCCc------cHHHHHHHhcc-cHHHh-hHHH
Confidence            5  6777777654 445555554 666667777776643 44444   1111      22466666665 55544 4443


Q ss_pred             CCcchhhhcccCCCCCCccEEEEecCCchhhhHHhhcCCCccceeeccccccceecccccCCCCCccEEEecCCCC----
Q 045021          178 ELPATLESLEVGNQPPSLKSLNVWSCSKLESIAERLDNNTSLEMISILWCENLKFLPSGLHNLRQLQEIQLWGCEN----  253 (461)
Q Consensus       178 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~----  253 (461)
                      .....          +++..|++++ ..+...|..+..+.+|++|+++++ .+..+|.+++++ .|+.|.+.+|+-    
T Consensus       247 ~~~~L----------~~l~vLDLRd-Nklke~Pde~clLrsL~rLDlSNN-~is~Lp~sLgnl-hL~~L~leGNPlrTiR  313 (565)
T KOG0472|consen  247 HLKHL----------NSLLVLDLRD-NKLKEVPDEICLLRSLERLDLSNN-DISSLPYSLGNL-HLKFLALEGNPLRTIR  313 (565)
T ss_pred             Hhccc----------ccceeeeccc-cccccCchHHHHhhhhhhhcccCC-ccccCCcccccc-eeeehhhcCCchHHHH
Confidence            32222          4566666666 456666666666666666666654 455566666666 666666655530    


Q ss_pred             -----------------------Cc----------cCCC----CCCCCCCcceEeeccCccccccccccCCCC---CccE
Q 045021          254 -----------------------LV----------SFPE----GGLPCAKLSKLGIYRCERLEALPKGLHNLK---SLKK  293 (461)
Q Consensus       254 -----------------------l~----------~l~~----~~~~~~~L~~L~l~~c~~~~~~~~~~~~l~---~L~~  293 (461)
                                             +.          ..+.    ......+.+.|++++ .+++.+|..+....   -...
T Consensus       314 r~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~-~qlt~VPdEVfea~~~~~Vt~  392 (565)
T KOG0472|consen  314 REIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSD-KQLTLVPDEVFEAAKSEIVTS  392 (565)
T ss_pred             HHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccc-cccccCCHHHHHHhhhcceEE
Confidence                                   00          0000    001122456666655 44555554221111   1222


Q ss_pred             EEecc------------------------cCCCcCCC--CCCCCcceEEeecCchhhHHhhhhcccCCCCcCEEEEecCC
Q 045021          294 LRIGG------------------------KLPSLEED--GLPTNLHFLKIERNMEIWKSMIERGFHKFSSLRHLTIEGCD  347 (461)
Q Consensus       294 L~l~~------------------------~~~~l~~~--~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~  347 (461)
                      .+++.                        +..+++..  ...++|..|++++|. +. ..+. .+..+..|+.|+++.| 
T Consensus       393 VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~-Ln-~LP~-e~~~lv~Lq~LnlS~N-  468 (565)
T KOG0472|consen  393 VNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNL-LN-DLPE-EMGSLVRLQTLNLSFN-  468 (565)
T ss_pred             EecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccch-hh-hcch-hhhhhhhhheeccccc-
Confidence            33332                        22222222  334688888888886 32 2222 3556677888888887 


Q ss_pred             CcccccCccccccCCCCCCCCCcceeecCCCCCCcccc-cchhhccCCcEEEecCCCCCcccCCC-CCcccccEeeccCC
Q 045021          348 DDMVSFPPEDRRLGTTLPLPASLASLTIGDFPNLERLS-SSIVDLQNLKYLKLYDCPKLKYFSEK-GLPSSLLRLYIDEC  425 (461)
Q Consensus       348 ~~~~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~-~~~~~~~~L~~L~l~~C~~l~~~~~~-~~~~~L~~L~i~~c  425 (461)
                       +++.+|.. +.      .+..++.+-.++ +.+.+++ .++..+.+|..|++.+ +.+..+|.. +-..+|++|++.++
T Consensus       469 -rFr~lP~~-~y------~lq~lEtllas~-nqi~~vd~~~l~nm~nL~tLDL~n-Ndlq~IPp~LgnmtnL~hLeL~gN  538 (565)
T KOG0472|consen  469 -RFRMLPEC-LY------ELQTLETLLASN-NQIGSVDPSGLKNMRNLTTLDLQN-NDLQQIPPILGNMTNLRHLELDGN  538 (565)
T ss_pred             -ccccchHH-Hh------hHHHHHHHHhcc-ccccccChHHhhhhhhcceeccCC-CchhhCChhhccccceeEEEecCC
Confidence             77777775 21      233344444444 4566665 3466677777777776 666666663 33567777777776


Q ss_pred             ch
Q 045021          426 PL  427 (461)
Q Consensus       426 ~~  427 (461)
                      |.
T Consensus       539 pf  540 (565)
T KOG0472|consen  539 PF  540 (565)
T ss_pred             cc
Confidence            64

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.67  E-value=1.1e-18  Score=172.87  Aligned_cols=356  Identities=21%  Similarity=0.249  Sum_probs=242.2

Q ss_pred             hhhhhhhhcCCccEEEecCCcCCccccccCCCCCCcCEEEecCCcCcccccC-CCCCCCccEEEEeec------------
Q 045021           20 QQQQLCELSCRLEYLILRYCKGLVKLPQSSLSLSSLREIEICRCHSLVSFPE-VALPSKLKKIEIREC------------   86 (461)
Q Consensus        20 ~l~~l~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~-~~~l~~L~~L~l~~~------------   86 (461)
                      ...++    .+|++|.|.+ +.+..+|.++..+++|++|+++.+ .+..+|. +..+..+..+..+++            
T Consensus        86 s~~~~----~~l~~lnL~~-n~l~~lP~~~~~lknl~~LdlS~N-~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik  159 (1081)
T KOG0618|consen   86 SCSNM----RNLQYLNLKN-NRLQSLPASISELKNLQYLDLSFN-HFGPIPLVIEVLTAEEELAASNNEKIQRLGQTSIK  159 (1081)
T ss_pred             hhhhh----hcchhheecc-chhhcCchhHHhhhcccccccchh-ccCCCchhHHhhhHHHHHhhhcchhhhhhccccch
Confidence            36677    9999999987 677899999999999999999996 4455665 444444444444433            


Q ss_pred             -------CCccccCcccccCCCCcccE-EEeeCCC----------CCcccccc--------CCCCCccEEecccCCCceE
Q 045021           87 -------DALKSLPEAWMCGTNSSLEI-LKIWSCH----------SLPYIARV--------QLPPSLKRLDISHCDNIRT  140 (461)
Q Consensus        87 -------~~l~~~~~~~~~~~~~~L~~-L~l~~~~----------~l~~~~~~--------~~~~~L~~L~l~~~~~~~~  140 (461)
                             .....++.+.     ..++. |+++++.          +++.+...        ..-++++.|+..++...+.
T Consensus       160 ~~~l~~n~l~~~~~~~i-----~~l~~~ldLr~N~~~~~dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~  234 (1081)
T KOG0618|consen  160 KLDLRLNVLGGSFLIDI-----YNLTHQLDLRYNEMEVLDLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTL  234 (1081)
T ss_pred             hhhhhhhhcccchhcch-----hhhheeeecccchhhhhhhhhccchhhhhhhhcccceEEecCcchheeeeccCcceee
Confidence                   1111122221     33333 5555532          11111100        1114455555555543322


Q ss_pred             eccCCCcccccccccccCccEEEEecCCCCeecccCCCCcchhhhcccCCCCCCccEEEEecCCchhhhHHhhcCCCccc
Q 045021          141 LTVEDGIQSSSRRYTSYLLEKLEIWDCPSLTCIFSKNELPATLESLEVGNQPPSLKSLNVWSCSKLESIAERLDNNTSLE  220 (461)
Q Consensus       141 l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~  220 (461)
                      .+  .....        +++.++++. ++++. +|     .|+..      |.+|+.++... +.+..++..+....+|+
T Consensus       235 ~~--~p~p~--------nl~~~dis~-n~l~~-lp-----~wi~~------~~nle~l~~n~-N~l~~lp~ri~~~~~L~  290 (1081)
T KOG0618|consen  235 DV--HPVPL--------NLQYLDISH-NNLSN-LP-----EWIGA------CANLEALNANH-NRLVALPLRISRITSLV  290 (1081)
T ss_pred             cc--ccccc--------cceeeecch-hhhhc-ch-----HHHHh------cccceEecccc-hhHHhhHHHHhhhhhHH
Confidence            22  22222        689999998 77776 44     33211      25899999988 56788888888899999


Q ss_pred             eeeccccccceecccccCCCCCccEEEecCCCCCccCCCCCCC--CCCcceEeeccCcccccccc-ccCCCCCccEEEec
Q 045021          221 MISILWCENLKFLPSGLHNLRQLQEIQLWGCENLVSFPEGGLP--CAKLSKLGIYRCERLEALPK-GLHNLKSLKKLRIG  297 (461)
Q Consensus       221 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~--~~~L~~L~l~~c~~~~~~~~-~~~~l~~L~~L~l~  297 (461)
                      .|....| .++.+|.....+++|++|++..| ++..+|.....  ...++.+..+. ..+...|. .-...+.|+.|.+.
T Consensus       291 ~l~~~~n-el~yip~~le~~~sL~tLdL~~N-~L~~lp~~~l~v~~~~l~~ln~s~-n~l~~lp~~~e~~~~~Lq~Lyla  367 (1081)
T KOG0618|consen  291 SLSAAYN-ELEYIPPFLEGLKSLRTLDLQSN-NLPSLPDNFLAVLNASLNTLNVSS-NKLSTLPSYEENNHAALQELYLA  367 (1081)
T ss_pred             HHHhhhh-hhhhCCCcccccceeeeeeehhc-cccccchHHHhhhhHHHHHHhhhh-ccccccccccchhhHHHHHHHHh
Confidence            9999886 67888888888999999999997 66777762222  11245554443 34444443 22356788888888


Q ss_pred             c---cCCCcCCCCCCCCcceEEeecCchhhHHhhhhcccCCCCcCEEEEecCCCcccccCccccccCCCCCCCCCcceee
Q 045021          298 G---KLPSLEEDGLPTNLHFLKIERNMEIWKSMIERGFHKFSSLRHLTIEGCDDDMVSFPPEDRRLGTTLPLPASLASLT  374 (461)
Q Consensus       298 ~---~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~i~~~~~~~~~~~~~~~~L~~L~  374 (461)
                      +   .-..+|....+..|+.|++++|+ +. .++...+.++..|++|++++|  .+..++.. .      ..++.|++|.
T Consensus       368 nN~Ltd~c~p~l~~~~hLKVLhLsyNr-L~-~fpas~~~kle~LeeL~LSGN--kL~~Lp~t-v------a~~~~L~tL~  436 (1081)
T KOG0618|consen  368 NNHLTDSCFPVLVNFKHLKVLHLSYNR-LN-SFPASKLRKLEELEELNLSGN--KLTTLPDT-V------ANLGRLHTLR  436 (1081)
T ss_pred             cCcccccchhhhccccceeeeeecccc-cc-cCCHHHHhchHHhHHHhcccc--hhhhhhHH-H------HhhhhhHHHh
Confidence            8   55567777778899999999997 22 345556788999999999998  88999876 4      3677899998


Q ss_pred             cCCCCCCcccccchhhccCCcEEEecCCCCCcccCC-CCCc-ccccEeeccCCch
Q 045021          375 IGDFPNLERLSSSIVDLQNLKYLKLYDCPKLKYFSE-KGLP-SSLLRLYIDECPL  427 (461)
Q Consensus       375 l~~~~~l~~i~~~~~~~~~L~~L~l~~C~~l~~~~~-~~~~-~~L~~L~i~~c~~  427 (461)
                      ..+ +.+..+| .+..+++|+.++++. ++++.+-. ..++ ++|++|++++++.
T Consensus       437 ahs-N~l~~fP-e~~~l~qL~~lDlS~-N~L~~~~l~~~~p~p~LkyLdlSGN~~  488 (1081)
T KOG0618|consen  437 AHS-NQLLSFP-ELAQLPQLKVLDLSC-NNLSEVTLPEALPSPNLKYLDLSGNTR  488 (1081)
T ss_pred             hcC-Cceeech-hhhhcCcceEEeccc-chhhhhhhhhhCCCcccceeeccCCcc
Confidence            888 6888887 778899999999975 88888644 3456 8999999999875

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.56  E-value=5.5e-14  Score=143.32  Aligned_cols=256  Identities=27%  Similarity=0.341  Sum_probs=141.9

Q ss_pred             ccEEEEeecCCccccCcccccCCCCcccEEEeeCCCCCccccccCCCCCccEEecccCCCceEeccCCCccccccccccc
Q 045021           78 LKKIEIRECDALKSLPEAWMCGTNSSLEILKIWSCHSLPYIARVQLPPSLKRLDISHCDNIRTLTVEDGIQSSSRRYTSY  157 (461)
Q Consensus        78 L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~~~  157 (461)
                      -..|+++++. ++.+|..+.    ++|+.|++.+ +.++.+|.  .+++|++|+++++ .++.+|  ...         +
T Consensus       203 ~~~LdLs~~~-LtsLP~~l~----~~L~~L~L~~-N~Lt~LP~--lp~~Lk~LdLs~N-~LtsLP--~lp---------~  262 (788)
T PRK15387        203 NAVLNVGESG-LTTLPDCLP----AHITTLVIPD-NNLTSLPA--LPPELRTLEVSGN-QLTSLP--VLP---------P  262 (788)
T ss_pred             CcEEEcCCCC-CCcCCcchh----cCCCEEEccC-CcCCCCCC--CCCCCcEEEecCC-ccCccc--Ccc---------c
Confidence            4455555543 555555432    3456666655 34554443  2455666666654 344444  211         2


Q ss_pred             CccEEEEecCCCCeecccCCCCcchhhhcccCCCCCCccEEEEecCCchhhhHHhhcCCCccceeeccccccceeccccc
Q 045021          158 LLEKLEIWDCPSLTCIFSKNELPATLESLEVGNQPPSLKSLNVWSCSKLESIAERLDNNTSLEMISILWCENLKFLPSGL  237 (461)
Q Consensus       158 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~  237 (461)
                      +|+.|++.+ +.+.. ++.  .+            ++|+.|++.++ .+..+|.   .+++|+.|++++| .+..+|.. 
T Consensus       263 sL~~L~Ls~-N~L~~-Lp~--lp------------~~L~~L~Ls~N-~Lt~LP~---~p~~L~~LdLS~N-~L~~Lp~l-  320 (788)
T PRK15387        263 GLLELSIFS-NPLTH-LPA--LP------------SGLCKLWIFGN-QLTSLPV---LPPGLQELSVSDN-QLASLPAL-  320 (788)
T ss_pred             ccceeeccC-Cchhh-hhh--ch------------hhcCEEECcCC-ccccccc---cccccceeECCCC-ccccCCCC-
Confidence            466666655 44443 222  11            23666666553 3444432   2356666676665 34444432 


Q ss_pred             CCCCCccEEEecCCCCCccCCCCCCCCCCcceEeeccCccccccccccCCCCCccEEEecc-cCCCcCCCCCCCCcceEE
Q 045021          238 HNLRQLQEIQLWGCENLVSFPEGGLPCAKLSKLGIYRCERLEALPKGLHNLKSLKKLRIGG-KLPSLEEDGLPTNLHFLK  316 (461)
Q Consensus       238 ~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~l~~L~~L~l~~-~~~~l~~~~~~~~L~~L~  316 (461)
                        ..+|+.|++++| .+..+|..   ..+|+.|++++| .++.+|..   .++|+.|++++ .+..+|.  .+++|+.|+
T Consensus       321 --p~~L~~L~Ls~N-~L~~LP~l---p~~Lq~LdLS~N-~Ls~LP~l---p~~L~~L~Ls~N~L~~LP~--l~~~L~~Ld  388 (788)
T PRK15387        321 --PSELCKLWAYNN-QLTSLPTL---PSGLQELSVSDN-QLASLPTL---PSELYKLWAYNNRLTSLPA--LPSGLKELI  388 (788)
T ss_pred             --cccccccccccC-cccccccc---ccccceEecCCC-ccCCCCCC---CcccceehhhccccccCcc--cccccceEE
Confidence              135666666665 44455431   136777777663 45555542   24566666666 5555553  245677777


Q ss_pred             eecCchhhHHhhhhcccCCCCcCEEEEecCCCcccccCccccccCCCCCCCCCcceeecCCCCCCcccccchhhccCCcE
Q 045021          317 IERNMEIWKSMIERGFHKFSSLRHLTIEGCDDDMVSFPPEDRRLGTTLPLPASLASLTIGDFPNLERLSSSIVDLQNLKY  396 (461)
Q Consensus       317 l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~L~~  396 (461)
                      +++|. +.. .+    ...++|+.|++++|  .+..+|.          .+.+|+.|++++ +.++.+|..+..+++|+.
T Consensus       389 Ls~N~-Lt~-LP----~l~s~L~~LdLS~N--~LssIP~----------l~~~L~~L~Ls~-NqLt~LP~sl~~L~~L~~  449 (788)
T PRK15387        389 VSGNR-LTS-LP----VLPSELKELMVSGN--RLTSLPM----------LPSGLLSLSVYR-NQLTRLPESLIHLSSETT  449 (788)
T ss_pred             ecCCc-ccC-CC----CcccCCCEEEccCC--cCCCCCc----------chhhhhhhhhcc-CcccccChHHhhccCCCe
Confidence            77775 321 11    11357788888876  6666664          234677788887 567778777777888888


Q ss_pred             EEecCCCCCcc
Q 045021          397 LKLYDCPKLKY  407 (461)
Q Consensus       397 L~l~~C~~l~~  407 (461)
                      |++++ |.++.
T Consensus       450 LdLs~-N~Ls~  459 (788)
T PRK15387        450 VNLEG-NPLSE  459 (788)
T ss_pred             EECCC-CCCCc
Confidence            88887 55654

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.52  E-value=1.4e-13  Score=140.31  Aligned_cols=116  Identities=28%  Similarity=0.336  Sum_probs=73.4

Q ss_pred             CCccEEEecCCcCCccccccCCCCCCcCEEEecCCcCcccccCCCCCCCccEEEEeecCCccccCcccccCCCCcccEEE
Q 045021           29 CRLEYLILRYCKGLVKLPQSSLSLSSLREIEICRCHSLVSFPEVALPSKLKKIEIRECDALKSLPEAWMCGTNSSLEILK  108 (461)
Q Consensus        29 ~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~  108 (461)
                      .+-..|+++++ +++.+|..+.  ++|+.|++.+| .++.+|.  .+++|++|+++++. ++.+|..     .++|+.|+
T Consensus       201 ~~~~~LdLs~~-~LtsLP~~l~--~~L~~L~L~~N-~Lt~LP~--lp~~Lk~LdLs~N~-LtsLP~l-----p~sL~~L~  268 (788)
T PRK15387        201 NGNAVLNVGES-GLTTLPDCLP--AHITTLVIPDN-NLTSLPA--LPPELRTLEVSGNQ-LTSLPVL-----PPGLLELS  268 (788)
T ss_pred             CCCcEEEcCCC-CCCcCCcchh--cCCCEEEccCC-cCCCCCC--CCCCCcEEEecCCc-cCcccCc-----ccccceee
Confidence            44567788774 5677777665  47888888875 5676764  35788888888854 7777642     15677777


Q ss_pred             eeCCCCCccccccCCCCCccEEecccCCCceEeccCCCcccccccccccCccEEEEecCCCCee
Q 045021          109 IWSCHSLPYIARVQLPPSLKRLDISHCDNIRTLTVEDGIQSSSRRYTSYLLEKLEIWDCPSLTC  172 (461)
Q Consensus       109 l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~  172 (461)
                      +.++ .++.++.  .+.+|+.|+++++. ++.+|  ..         .++|+.|++++ ++++.
T Consensus       269 Ls~N-~L~~Lp~--lp~~L~~L~Ls~N~-Lt~LP--~~---------p~~L~~LdLS~-N~L~~  316 (788)
T PRK15387        269 IFSN-PLTHLPA--LPSGLCKLWIFGNQ-LTSLP--VL---------PPGLQELSVSD-NQLAS  316 (788)
T ss_pred             ccCC-chhhhhh--chhhcCEEECcCCc-ccccc--cc---------ccccceeECCC-Ccccc
Confidence            7764 4555443  33566777777653 44454  31         23567777766 55554

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.43  E-value=4.6e-13  Score=137.40  Aligned_cols=76  Identities=18%  Similarity=0.349  Sum_probs=34.0

Q ss_pred             CCcCEEEEecCCCcccccCccccccCCCCCCCCCcceeecCCCCCCcccccchhhccCCcEEEecCCCCCcccCCC----
Q 045021          336 SSLRHLTIEGCDDDMVSFPPEDRRLGTTLPLPASLASLTIGDFPNLERLSSSIVDLQNLKYLKLYDCPKLKYFSEK----  411 (461)
Q Consensus       336 ~~L~~L~l~~~~~~~~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~L~~L~l~~C~~l~~~~~~----  411 (461)
                      ++|+.|++++|  .+..+|..         .+++|+.|++++| .+..+|..+.  .+|+.|++++ ++++.+|..    
T Consensus       346 ~sL~~L~Ls~N--~L~~LP~~---------lp~~L~~LdLs~N-~Lt~LP~~l~--~sL~~LdLs~-N~L~~LP~sl~~~  410 (754)
T PRK15370        346 PELQVLDVSKN--QITVLPET---------LPPTITTLDVSRN-ALTNLPENLP--AALQIMQASR-NNLVRLPESLPHF  410 (754)
T ss_pred             CcccEEECCCC--CCCcCChh---------hcCCcCEEECCCC-cCCCCCHhHH--HHHHHHhhcc-CCcccCchhHHHH
Confidence            35555555554  44444442         2345555555552 4444443322  2455555555 444444431    


Q ss_pred             -CCcccccEeeccCCc
Q 045021          412 -GLPSSLLRLYIDECP  426 (461)
Q Consensus       412 -~~~~~L~~L~i~~c~  426 (461)
                       +..+.+..+++.++|
T Consensus       411 ~~~~~~l~~L~L~~Np  426 (754)
T PRK15370        411 RGEGPQPTRIIVEYNP  426 (754)
T ss_pred             hhcCCCccEEEeeCCC
Confidence             012344555555554

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.42  E-value=2.3e-15  Score=136.11  Aligned_cols=86  Identities=16%  Similarity=0.131  Sum_probs=63.3

Q ss_pred             hhcCCCccceeeccccccceecccccCCCCCccEEEecCCCCCccCCC-CCCCCCCcceEeeccCccccccccccCCCCC
Q 045021          212 RLDNNTSLEMISILWCENLKFLPSGLHNLRQLQEIQLWGCENLVSFPE-GGLPCAKLSKLGIYRCERLEALPKGLHNLKS  290 (461)
Q Consensus       212 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~c~~~~~~~~~~~~l~~  290 (461)
                      .++.+++|++|+++++..-..-+.+|.....++.|.+..| .++.+.. ....+..|+.|++.+++.-+.-|.+|..+.+
T Consensus       269 cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N-~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~  347 (498)
T KOG4237|consen  269 CFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRN-KLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFS  347 (498)
T ss_pred             HHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcc-hHHHHHHHhhhccccceeeeecCCeeEEEecccccccce
Confidence            6788999999999987433444678888899999999887 5565544 3445668899999985544444667888888


Q ss_pred             ccEEEecc
Q 045021          291 LKKLRIGG  298 (461)
Q Consensus       291 L~~L~l~~  298 (461)
                      |.+|.+-.
T Consensus       348 l~~l~l~~  355 (498)
T KOG4237|consen  348 LSTLNLLS  355 (498)
T ss_pred             eeeeehcc
Confidence            88887654

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=99.39  E-value=5.9e-15  Score=134.51  Aligned_cols=151  Identities=18%  Similarity=0.267  Sum_probs=80.4

Q ss_pred             ccEEEEecCCchhhh--HHhhcCCCccceeeccccccceecc--cccCCCCCccEEEecCCCCCccC--CCCCCCCCCcc
Q 045021          195 LKSLNVWSCSKLESI--AERLDNNTSLEMISILWCENLKFLP--SGLHNLRQLQEIQLWGCENLVSF--PEGGLPCAKLS  268 (461)
Q Consensus       195 L~~L~l~~~~~l~~~--~~~~~~l~~L~~L~l~~~~~~~~~~--~~~~~l~~L~~L~l~~~~~l~~l--~~~~~~~~~L~  268 (461)
                      +.++++..|..+++.  ...-..+..|+.+..++|..+.+.+  ..-.+.++|+.+.+++|..+.+.  ....-.++.|+
T Consensus       270 i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le  349 (483)
T KOG4341|consen  270 ILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLE  349 (483)
T ss_pred             hhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhh
Confidence            444444444444332  2233445566666666655543321  22234466666666666544432  11333455666


Q ss_pred             eEeeccCccccc--cccccCCCCCccEEEecc-------cCCCcCCC-CCCCCcceEEeecCchhhHHhhhhcccCCCCc
Q 045021          269 KLGIYRCERLEA--LPKGLHNLKSLKKLRIGG-------KLPSLEED-GLPTNLHFLKIERNMEIWKSMIERGFHKFSSL  338 (461)
Q Consensus       269 ~L~l~~c~~~~~--~~~~~~~l~~L~~L~l~~-------~~~~l~~~-~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L  338 (461)
                      .+++.+|..+..  +...-.+++.|++|.++.       ++..+... .....|+.+.+.+|+.+++.... .+..+++|
T Consensus       350 ~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le-~l~~c~~L  428 (483)
T KOG4341|consen  350 RLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLE-HLSICRNL  428 (483)
T ss_pred             hhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHH-HHhhCccc
Confidence            666666654432  222234566666666665       11111211 23457888888888877655543 46777888


Q ss_pred             CEEEEecC
Q 045021          339 RHLTIEGC  346 (461)
Q Consensus       339 ~~L~l~~~  346 (461)
                      +.+++.+|
T Consensus       429 eri~l~~~  436 (483)
T KOG4341|consen  429 ERIELIDC  436 (483)
T ss_pred             ceeeeech
Confidence            88888887

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.39  E-value=1.3e-12  Score=134.03  Aligned_cols=246  Identities=21%  Similarity=0.361  Sum_probs=164.6

Q ss_pred             CcccEEEeeCCCCCccccccCCCCCccEEecccCCCceEeccCCCcccccccccccCccEEEEecCCCCeecccCCCCcc
Q 045021          102 SSLEILKIWSCHSLPYIARVQLPPSLKRLDISHCDNIRTLTVEDGIQSSSRRYTSYLLEKLEIWDCPSLTCIFSKNELPA  181 (461)
Q Consensus       102 ~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~  181 (461)
                      .+...|++++. .++.+|.. .++.++.|+++++. ++.+|  ..+.        ++|+.|++++ +.++. +|.. ++ 
T Consensus       178 ~~~~~L~L~~~-~LtsLP~~-Ip~~L~~L~Ls~N~-LtsLP--~~l~--------~nL~~L~Ls~-N~Lts-LP~~-l~-  240 (754)
T PRK15370        178 NNKTELRLKIL-GLTTIPAC-IPEQITTLILDNNE-LKSLP--ENLQ--------GNIKTLYANS-NQLTS-IPAT-LP-  240 (754)
T ss_pred             cCceEEEeCCC-CcCcCCcc-cccCCcEEEecCCC-CCcCC--hhhc--------cCCCEEECCC-Ccccc-CChh-hh-
Confidence            45667777663 55555542 23578888887753 66666  5442        3688888887 56665 4432 11 


Q ss_pred             hhhhcccCCCCCCccEEEEecCCchhhhHHhhcCCCccceeeccccccceecccccCCCCCccEEEecCCCCCccCCCCC
Q 045021          182 TLESLEVGNQPPSLKSLNVWSCSKLESIAERLDNNTSLEMISILWCENLKFLPSGLHNLRQLQEIQLWGCENLVSFPEGG  261 (461)
Q Consensus       182 ~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~  261 (461)
                                 ++|+.|++++| .+..+|..+.  .+|+.|++++| .+..+|..+.  ++|+.|++++| .+..+|...
T Consensus       241 -----------~~L~~L~Ls~N-~L~~LP~~l~--s~L~~L~Ls~N-~L~~LP~~l~--~sL~~L~Ls~N-~Lt~LP~~l  302 (754)
T PRK15370        241 -----------DTIQEMELSIN-RITELPERLP--SALQSLDLFHN-KISCLPENLP--EELRYLSVYDN-SIRTLPAHL  302 (754)
T ss_pred             -----------ccccEEECcCC-ccCcCChhHh--CCCCEEECcCC-ccCccccccC--CCCcEEECCCC-ccccCcccc
Confidence                       35888888875 4455555443  47888888865 5666676553  58899999887 566666433


Q ss_pred             CCCCCcceEeeccCccccccccccCCCCCccEEEecc-cCCCcCCCCCCCCcceEEeecCchhhHHhhhhcccCCCCcCE
Q 045021          262 LPCAKLSKLGIYRCERLEALPKGLHNLKSLKKLRIGG-KLPSLEEDGLPTNLHFLKIERNMEIWKSMIERGFHKFSSLRH  340 (461)
Q Consensus       262 ~~~~~L~~L~l~~c~~~~~~~~~~~~l~~L~~L~l~~-~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~  340 (461)
                      .  ++|+.|++++| .++.+|..+  .++|+.|++++ .+..+|. ..+++|+.|++++|. +.. .+. .+  .++|++
T Consensus       303 p--~sL~~L~Ls~N-~Lt~LP~~l--~~sL~~L~Ls~N~Lt~LP~-~l~~sL~~L~Ls~N~-L~~-LP~-~l--p~~L~~  371 (754)
T PRK15370        303 P--SGITHLNVQSN-SLTALPETL--PPGLKTLEAGENALTSLPA-SLPPELQVLDVSKNQ-ITV-LPE-TL--PPTITT  371 (754)
T ss_pred             h--hhHHHHHhcCC-ccccCCccc--cccceeccccCCccccCCh-hhcCcccEEECCCCC-CCc-CCh-hh--cCCcCE
Confidence            2  37888888874 455566433  36888898888 7777764 345789999999886 331 221 11  368999


Q ss_pred             EEEecCCCcccccCccccccCCCCCCCCCcceeecCCCCCCcccccchh----hccCCcEEEecCCCCCc
Q 045021          341 LTIEGCDDDMVSFPPEDRRLGTTLPLPASLASLTIGDFPNLERLSSSIV----DLQNLKYLKLYDCPKLK  406 (461)
Q Consensus       341 L~l~~~~~~~~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~----~~~~L~~L~l~~C~~l~  406 (461)
                      |++++|  .+..+|..         .+.+|+.|++++ +.+..+|..+.    .++++..|.+.+ +.+.
T Consensus       372 LdLs~N--~Lt~LP~~---------l~~sL~~LdLs~-N~L~~LP~sl~~~~~~~~~l~~L~L~~-Npls  428 (754)
T PRK15370        372 LDVSRN--ALTNLPEN---------LPAALQIMQASR-NNLVRLPESLPHFRGEGPQPTRIIVEY-NPFS  428 (754)
T ss_pred             EECCCC--cCCCCCHh---------HHHHHHHHhhcc-CCcccCchhHHHHhhcCCCccEEEeeC-CCcc
Confidence            999998  77788875         445799999998 57777774443    347889999988 6654

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=99.34  E-value=1.8e-14  Score=131.39  Aligned_cols=293  Identities=16%  Similarity=0.255  Sum_probs=160.0

Q ss_pred             CCccEEEEeecCCccccCcccccCCCCcccEEEeeCCCCCcccccc---CCCCCccEEecccCCCceEeccCCCcccccc
Q 045021           76 SKLKKIEIRECDALKSLPEAWMCGTNSSLEILKIWSCHSLPYIARV---QLPPSLKRLDISHCDNIRTLTVEDGIQSSSR  152 (461)
Q Consensus        76 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~---~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~  152 (461)
                      ..|+.|++.||..+..-+.......|+++++|.+.+|.++++..-.   ..+++|+++++..|..++...    +...+.
T Consensus       138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~----Lk~la~  213 (483)
T KOG4341|consen  138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVS----LKYLAE  213 (483)
T ss_pred             cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHH----HHHHHH
Confidence            3566777777666655555444455677777777777666553222   556667777777666555422    111222


Q ss_pred             cccccCccEEEEecCCCCeecccCCCCcchhhhcccCCCCCCccEEEEecCCchhh--hHHhhcCCCccceeeccccccc
Q 045021          153 RYTSYLLEKLEIWDCPSLTCIFSKNELPATLESLEVGNQPPSLKSLNVWSCSKLES--IAERLDNNTSLEMISILWCENL  230 (461)
Q Consensus       153 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~--~~~~~~~l~~L~~L~l~~~~~~  230 (461)
                      +  +++|+.+++++|+.+.. -....+.         +.+.+++.+...+|...+.  +...-+.+.-+.++++..|..+
T Consensus       214 g--C~kL~~lNlSwc~qi~~-~gv~~~~---------rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~l  281 (483)
T KOG4341|consen  214 G--CRKLKYLNLSWCPQISG-NGVQALQ---------RGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQL  281 (483)
T ss_pred             h--hhhHHHhhhccCchhhc-CcchHHh---------ccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccc
Confidence            2  33677777777766554 1111111         1223355555555544432  2223344455555565555444


Q ss_pred             eecc--cccCCCCCccEEEecCCCCCccCCC--CCCCCCCcceEeeccCccccccccccCCCCCccEEEecccCCCcCCC
Q 045021          231 KFLP--SGLHNLRQLQEIQLWGCENLVSFPE--GGLPCAKLSKLGIYRCERLEALPKGLHNLKSLKKLRIGGKLPSLEED  306 (461)
Q Consensus       231 ~~~~--~~~~~l~~L~~L~l~~~~~l~~l~~--~~~~~~~L~~L~l~~c~~~~~~~~~~~~l~~L~~L~l~~~~~~l~~~  306 (461)
                      .+..  ..-..+..|+.+..++|..+...+.  ....+++|+.+-+.+|..++...  |.                 ..+
T Consensus       282 TD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~--ft-----------------~l~  342 (483)
T KOG4341|consen  282 TDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRG--FT-----------------MLG  342 (483)
T ss_pred             cchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhh--hh-----------------hhh
Confidence            3221  2223355667777766655443222  33344566666666666544321  11                 112


Q ss_pred             CCCCCcceEEeecCchhhHHhhhhcccCCCCcCEEEEecCC----CcccccCccccccCCCCCCCCCcceeecCCCCCCc
Q 045021          307 GLPTNLHFLKIERNMEIWKSMIERGFHKFSSLRHLTIEGCD----DDMVSFPPEDRRLGTTLPLPASLASLTIGDFPNLE  382 (461)
Q Consensus       307 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~----~~~~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~  382 (461)
                      ...+.|+.+++.+|....+........+++.|+.+.+++|.    .+++.+....       -....|+.+.+++|+.+.
T Consensus       343 rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~-------c~~~~l~~lEL~n~p~i~  415 (483)
T KOG4341|consen  343 RNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSS-------CSLEGLEVLELDNCPLIT  415 (483)
T ss_pred             cCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhcc-------ccccccceeeecCCCCch
Confidence            34456777777777655544333345567888888888771    1122222210       144578888888888775


Q ss_pred             cc-ccchhhccCCcEEEecCCCCCcccCC
Q 045021          383 RL-SSSIVDLQNLKYLKLYDCPKLKYFSE  410 (461)
Q Consensus       383 ~i-~~~~~~~~~L~~L~l~~C~~l~~~~~  410 (461)
                      +- -+.+..+++|+.+++.+|..+++-+.
T Consensus       416 d~~Le~l~~c~~Leri~l~~~q~vtk~~i  444 (483)
T KOG4341|consen  416 DATLEHLSICRNLERIELIDCQDVTKEAI  444 (483)
T ss_pred             HHHHHHHhhCcccceeeeechhhhhhhhh
Confidence            42 36777888899888888888877554

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.12  E-value=1.8e-12  Score=117.69  Aligned_cols=292  Identities=18%  Similarity=0.211  Sum_probs=168.2

Q ss_pred             CCccccCcccccCCCCcccEEEeeCCCCCcccccc--CCCCCccEEecccCCCceEeccCCCcccccccccccCccEEEE
Q 045021           87 DALKSLPEAWMCGTNSSLEILKIWSCHSLPYIARV--QLPPSLKRLDISHCDNIRTLTVEDGIQSSSRRYTSYLLEKLEI  164 (461)
Q Consensus        87 ~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~--~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~l  164 (461)
                      ++++.+|.+.-    +.-.++++.. +.++.+|+.  +.+++|++|+++++..-..-|  +.+..      ++++..|.+
T Consensus        56 ~GL~eVP~~LP----~~tveirLdq-N~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p--~AF~G------L~~l~~Lvl  122 (498)
T KOG4237|consen   56 KGLTEVPANLP----PETVEIRLDQ-NQISSIPPGAFKTLHRLRRLDLSKNNISFIAP--DAFKG------LASLLSLVL  122 (498)
T ss_pred             CCcccCcccCC----CcceEEEecc-CCcccCChhhccchhhhceecccccchhhcCh--Hhhhh------hHhhhHHHh
Confidence            35666666643    4456777765 677777776  667888888888754222223  33333      445666655


Q ss_pred             ecCCCCeecccCCCCcchhhhcccCCCCCCccEEEEecCCchhhh-HHhhcCCCccceeeccccccceeccc-ccCCCCC
Q 045021          165 WDCPSLTCIFSKNELPATLESLEVGNQPPSLKSLNVWSCSKLESI-AERLDNNTSLEMISILWCENLKFLPS-GLHNLRQ  242 (461)
Q Consensus       165 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~  242 (461)
                      .+-+++++ ++.+.+...          ..++.|.+.-+ .+..+ ...+..+++|..|.+.++ .+..++. .+..+..
T Consensus       123 yg~NkI~~-l~k~~F~gL----------~slqrLllNan-~i~Cir~~al~dL~~l~lLslyDn-~~q~i~~~tf~~l~~  189 (498)
T KOG4237|consen  123 YGNNKITD-LPKGAFGGL----------SSLQRLLLNAN-HINCIRQDALRDLPSLSLLSLYDN-KIQSICKGTFQGLAA  189 (498)
T ss_pred             hcCCchhh-hhhhHhhhH----------HHHHHHhcChh-hhcchhHHHHHHhhhcchhcccch-hhhhhccccccchhc
Confidence            55478887 776666543          34666666653 33333 447778888888888765 5555554 6777777


Q ss_pred             ccEEEecCCCCCccCCCCCCCCCCcceEeeccCccccccccccCCCCCccEEEecc-cCCCcCCCCCCCCcceE--Eeec
Q 045021          243 LQEIQLWGCENLVSFPEGGLPCAKLSKLGIYRCERLEALPKGLHNLKSLKKLRIGG-KLPSLEEDGLPTNLHFL--KIER  319 (461)
Q Consensus       243 L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~l~~L~~L~l~~-~~~~l~~~~~~~~L~~L--~l~~  319 (461)
                      ++++.+..++.+..       | +|+.+.=    .....|..++.+....-..+.+ .+.+++...+.-.++.+  .+..
T Consensus       190 i~tlhlA~np~icd-------C-nL~wla~----~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~  257 (498)
T KOG4237|consen  190 IKTLHLAQNPFICD-------C-NLPWLAD----DLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSS  257 (498)
T ss_pred             cchHhhhcCccccc-------c-ccchhhh----HHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhcc
Confidence            77777776643221       1 2222210    0111122222332222222333 33333322222122222  1111


Q ss_pred             CchhhHHhhhhcccCCCCcCEEEEecCCCcccccCccccccCCCCCCCCCcceeecCCCCCCcccc-cchhhccCCcEEE
Q 045021          320 NMEIWKSMIERGFHKFSSLRHLTIEGCDDDMVSFPPEDRRLGTTLPLPASLASLTIGDFPNLERLS-SSIVDLQNLKYLK  398 (461)
Q Consensus       320 ~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~-~~~~~~~~L~~L~  398 (461)
                      ....+...+...+..+++|++|++++|  .+..+.+..++      ....+++|.+.. +.++.+. ..|..+..|+.|+
T Consensus       258 ~d~~d~~cP~~cf~~L~~L~~lnlsnN--~i~~i~~~aFe------~~a~l~eL~L~~-N~l~~v~~~~f~~ls~L~tL~  328 (498)
T KOG4237|consen  258 EDFPDSICPAKCFKKLPNLRKLNLSNN--KITRIEDGAFE------GAAELQELYLTR-NKLEFVSSGMFQGLSGLKTLS  328 (498)
T ss_pred             ccCcCCcChHHHHhhcccceEeccCCC--ccchhhhhhhc------chhhhhhhhcCc-chHHHHHHHhhhccccceeee
Confidence            111233333345778888888888887  77777766442      566888888888 6777765 3466788888888


Q ss_pred             ecCCCCCcccCCCCC--cccccEeeccCCc
Q 045021          399 LYDCPKLKYFSEKGL--PSSLLRLYIDECP  426 (461)
Q Consensus       399 l~~C~~l~~~~~~~~--~~~L~~L~i~~c~  426 (461)
                      +.+ ++|+-+....+  ..+|.+|.+-.+|
T Consensus       329 L~~-N~it~~~~~aF~~~~~l~~l~l~~Np  357 (498)
T KOG4237|consen  329 LYD-NQITTVAPGAFQTLFSLSTLNLLSNP  357 (498)
T ss_pred             ecC-CeeEEEecccccccceeeeeehccCc
Confidence            888 88888766433  4577777776544

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.07  E-value=2.6e-12  Score=103.45  Aligned_cols=161  Identities=23%  Similarity=0.340  Sum_probs=105.0

Q ss_pred             cCCCccceeeccccccceecccccCCCCCccEEEecCCCCCccCCCCCCCCCCcceEeeccCccccccccccCCCCCccE
Q 045021          214 DNNTSLEMISILWCENLKFLPSGLHNLRQLQEIQLWGCENLVSFPEGGLPCAKLSKLGIYRCERLEALPKGLHNLKSLKK  293 (461)
Q Consensus       214 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~l~~L~~  293 (461)
                      ..+.+.+.|.++.+ ++..+|..++.+.+|+.|++++| .++++|.....++.|+.|.+.- +.+..+|.+|+++|.|++
T Consensus        30 f~~s~ITrLtLSHN-Kl~~vppnia~l~nlevln~~nn-qie~lp~~issl~klr~lnvgm-nrl~~lprgfgs~p~lev  106 (264)
T KOG0617|consen   30 FNMSNITRLTLSHN-KLTVVPPNIAELKNLEVLNLSNN-QIEELPTSISSLPKLRILNVGM-NRLNILPRGFGSFPALEV  106 (264)
T ss_pred             cchhhhhhhhcccC-ceeecCCcHHHhhhhhhhhcccc-hhhhcChhhhhchhhhheecch-hhhhcCccccCCCchhhh
Confidence            34555666666664 55556666777777777777765 5667777666666777777654 455566667777776666


Q ss_pred             EEecccCCCcCCCCCCCCcceEEeecCchhhHHhhhhcccCCCCcCEEEEecCCCcccccCccccccCCCCCCCCCccee
Q 045021          294 LRIGGKLPSLEEDGLPTNLHFLKIERNMEIWKSMIERGFHKFSSLRHLTIEGCDDDMVSFPPEDRRLGTTLPLPASLASL  373 (461)
Q Consensus       294 L~l~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~i~~~~~~~~~~~~~~~~L~~L  373 (461)
                      |++..                     |..-+...+. .+-.+..|+-|++++|  .++.+|.+ .|      .+++|+.|
T Consensus       107 ldlty---------------------nnl~e~~lpg-nff~m~tlralyl~dn--dfe~lp~d-vg------~lt~lqil  155 (264)
T KOG0617|consen  107 LDLTY---------------------NNLNENSLPG-NFFYMTTLRALYLGDN--DFEILPPD-VG------KLTNLQIL  155 (264)
T ss_pred             hhccc---------------------cccccccCCc-chhHHHHHHHHHhcCC--CcccCChh-hh------hhcceeEE
Confidence            66654                     2211111111 1233456666777776  67777776 53      67788888


Q ss_pred             ecCCCCCCcccccchhhccCCcEEEecCCCCCcccCC
Q 045021          374 TIGDFPNLERLSSSIVDLQNLKYLKLYDCPKLKYFSE  410 (461)
Q Consensus       374 ~l~~~~~l~~i~~~~~~~~~L~~L~l~~C~~l~~~~~  410 (461)
                      .+++ +.+-++|..++.+..|++|.+++ +.++-+|.
T Consensus       156 ~lrd-ndll~lpkeig~lt~lrelhiqg-nrl~vlpp  190 (264)
T KOG0617|consen  156 SLRD-NDLLSLPKEIGDLTRLRELHIQG-NRLTVLPP  190 (264)
T ss_pred             eecc-CchhhCcHHHHHHHHHHHHhccc-ceeeecCh
Confidence            8888 56777777778888888888888 77776665

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=99.03  E-value=1.5e-10  Score=121.01  Aligned_cols=82  Identities=15%  Similarity=0.163  Sum_probs=38.2

Q ss_pred             CcCEEEecCCcC-cccccC--CCCCCCccEEEEeecCCccccCcccccCCCCcccEEEeeCCCCCcccccc-CCCCCccE
Q 045021           54 SLREIEICRCHS-LVSFPE--VALPSKLKKIEIRECDALKSLPEAWMCGTNSSLEILKIWSCHSLPYIARV-QLPPSLKR  129 (461)
Q Consensus        54 ~L~~L~l~~~~~-l~~~~~--~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~~~L~~  129 (461)
                      .|++|-+.++.. +..++.  +..++.|+.|++++|..+..+|..+...  .+|+.|++++ ..++.+|.. ..+..|.+
T Consensus       546 ~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~L--i~LryL~L~~-t~I~~LP~~l~~Lk~L~~  622 (889)
T KOG4658|consen  546 KLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGEL--VHLRYLDLSD-TGISHLPSGLGNLKKLIY  622 (889)
T ss_pred             ccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhh--hhhhcccccC-CCccccchHHHHHHhhhe
Confidence            455555544321 333333  4445555555555555455555554444  4555555544 234444443 44445555


Q ss_pred             EecccCCCc
Q 045021          130 LDISHCDNI  138 (461)
Q Consensus       130 L~l~~~~~~  138 (461)
                      |++..+...
T Consensus       623 Lnl~~~~~l  631 (889)
T KOG4658|consen  623 LNLEVTGRL  631 (889)
T ss_pred             ecccccccc
Confidence            555544433

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.00  E-value=1.1e-11  Score=100.00  Aligned_cols=156  Identities=22%  Similarity=0.354  Sum_probs=117.8

Q ss_pred             CCccEEEEecCCchhhhHHhhcCCCccceeeccccccceecccccCCCCCccEEEecCCCCCccCCCCCCCCCCcceEee
Q 045021          193 PSLKSLNVWSCSKLESIAERLDNNTSLEMISILWCENLKFLPSGLHNLRQLQEIQLWGCENLVSFPEGGLPCAKLSKLGI  272 (461)
Q Consensus       193 ~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l  272 (461)
                      .++..|.++. ..+..+|..++.+.+|+.|++.++ .+.++|.+++.+++|+.|++.-| .+..+|..++.+|.|+.|++
T Consensus        33 s~ITrLtLSH-NKl~~vppnia~l~nlevln~~nn-qie~lp~~issl~klr~lnvgmn-rl~~lprgfgs~p~levldl  109 (264)
T KOG0617|consen   33 SNITRLTLSH-NKLTVVPPNIAELKNLEVLNLSNN-QIEELPTSISSLPKLRILNVGMN-RLNILPRGFGSFPALEVLDL  109 (264)
T ss_pred             hhhhhhhccc-CceeecCCcHHHhhhhhhhhcccc-hhhhcChhhhhchhhhheecchh-hhhcCccccCCCchhhhhhc
Confidence            4588888888 567777778888999999999975 78999999999999999999875 77889999999999999999


Q ss_pred             ccCc-cccccccccCCCCCccEEEecc-cCCCcCCC-CCCCCcceEEeecCchhhHHhhhhcccCCCCcCEEEEecCCCc
Q 045021          273 YRCE-RLEALPKGLHNLKSLKKLRIGG-KLPSLEED-GLPTNLHFLKIERNMEIWKSMIERGFHKFSSLRHLTIEGCDDD  349 (461)
Q Consensus       273 ~~c~-~~~~~~~~~~~l~~L~~L~l~~-~~~~l~~~-~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~  349 (461)
                      ..++ +-..+|..|..++.|+.|.+++ +.+.+|.. +...+|+.|.+++|..++-+-   .++.+..|++|.+.+|  +
T Consensus       110 tynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll~lpk---eig~lt~lrelhiqgn--r  184 (264)
T KOG0617|consen  110 TYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLSLPK---EIGDLTRLRELHIQGN--R  184 (264)
T ss_pred             cccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchhhCcH---HHHHHHHHHHHhcccc--e
Confidence            8754 3346787788888888888888 66666654 556666667666666433211   2455566666666665  5


Q ss_pred             ccccCcc
Q 045021          350 MVSFPPE  356 (461)
Q Consensus       350 ~~~i~~~  356 (461)
                      +..+|.+
T Consensus       185 l~vlppe  191 (264)
T KOG0617|consen  185 LTVLPPE  191 (264)
T ss_pred             eeecChh
Confidence            5555544

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.98  E-value=8.1e-11  Score=111.46  Aligned_cols=88  Identities=24%  Similarity=0.134  Sum_probs=39.5

Q ss_pred             HhhcCCCccceeeccccccceecccccCCC---CCccEEEecCCCCCc----cCCCCCCCC-CCcceEeeccCccc----
Q 045021          211 ERLDNNTSLEMISILWCENLKFLPSGLHNL---RQLQEIQLWGCENLV----SFPEGGLPC-AKLSKLGIYRCERL----  278 (461)
Q Consensus       211 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l---~~L~~L~l~~~~~l~----~l~~~~~~~-~~L~~L~l~~c~~~----  278 (461)
                      ..+..+++|++|++++|......+..+..+   ++|++|++++|....    .+......+ ++|+.|++++|...    
T Consensus        75 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~  154 (319)
T cd00116          75 QGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASC  154 (319)
T ss_pred             HHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHH
Confidence            344556666666666654332222222222   336666666653211    011111112 45666666665422    


Q ss_pred             cccccccCCCCCccEEEecc
Q 045021          279 EALPKGLHNLKSLKKLRIGG  298 (461)
Q Consensus       279 ~~~~~~~~~l~~L~~L~l~~  298 (461)
                      ..++..+..+++|++|++++
T Consensus       155 ~~~~~~~~~~~~L~~L~l~~  174 (319)
T cd00116         155 EALAKALRANRDLKELNLAN  174 (319)
T ss_pred             HHHHHHHHhCCCcCEEECcC
Confidence            12222344455566666555

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.90  E-value=1.6e-10  Score=109.49  Aligned_cols=254  Identities=20%  Similarity=0.121  Sum_probs=147.9

Q ss_pred             CccEEEEecCCc----hhhhHHhhcCCCccceeeccccccc------eecccccCCCCCccEEEecCCCCCccCCC----
Q 045021          194 SLKSLNVWSCSK----LESIAERLDNNTSLEMISILWCENL------KFLPSGLHNLRQLQEIQLWGCENLVSFPE----  259 (461)
Q Consensus       194 ~L~~L~l~~~~~----l~~~~~~~~~l~~L~~L~l~~~~~~------~~~~~~~~~l~~L~~L~l~~~~~l~~l~~----  259 (461)
                      +|+.+++.++..    ...++..+...+++++++++++..-      ..++..+..+++|+.|++++|......+.    
T Consensus        24 ~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~  103 (319)
T cd00116          24 CLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLES  103 (319)
T ss_pred             hccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHH
Confidence            477777777542    1234445666777888888765322      22344566788999999999854322222    


Q ss_pred             CCCCCCCcceEeeccCcccc----ccccccCCC-CCccEEEecc-cCCC-----cCC-CCCCCCcceEEeecCchhhHHh
Q 045021          260 GGLPCAKLSKLGIYRCERLE----ALPKGLHNL-KSLKKLRIGG-KLPS-----LEE-DGLPTNLHFLKIERNMEIWKSM  327 (461)
Q Consensus       260 ~~~~~~~L~~L~l~~c~~~~----~~~~~~~~l-~~L~~L~l~~-~~~~-----l~~-~~~~~~L~~L~l~~~~~l~~~~  327 (461)
                      .... ++|++|++++|.-..    .+...+..+ ++|+.|++++ .+..     +.. ...+++|++|++++|..-....
T Consensus       104 l~~~-~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~  182 (319)
T cd00116         104 LLRS-SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGI  182 (319)
T ss_pred             Hhcc-CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHH
Confidence            1112 469999999875331    222345566 8999999998 4441     111 1334689999999987332111


Q ss_pred             h--hhcccCCCCcCEEEEecCCCcccccCccccccCCCCCCCCCcceeecCCCCCCcccc--cchhh----ccCCcEEEe
Q 045021          328 I--ERGFHKFSSLRHLTIEGCDDDMVSFPPEDRRLGTTLPLPASLASLTIGDFPNLERLS--SSIVD----LQNLKYLKL  399 (461)
Q Consensus       328 ~--~~~~~~l~~L~~L~l~~~~~~~~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~--~~~~~----~~~L~~L~l  399 (461)
                      .  ...+..+++|++|++++|  .+.......+.  ......++|+.|++++| .+.+..  .....    .+.|++|++
T Consensus       183 ~~l~~~l~~~~~L~~L~L~~n--~i~~~~~~~l~--~~~~~~~~L~~L~ls~n-~l~~~~~~~l~~~~~~~~~~L~~L~l  257 (319)
T cd00116         183 RALAEGLKANCNLEVLDLNNN--GLTDEGASALA--ETLASLKSLEVLNLGDN-NLTDAGAAALASALLSPNISLLTLSL  257 (319)
T ss_pred             HHHHHHHHhCCCCCEEeccCC--ccChHHHHHHH--HHhcccCCCCEEecCCC-cCchHHHHHHHHHHhccCCCceEEEc
Confidence            1  123455679999999998  44322111000  00124578999999996 454321  11122    479999999


Q ss_pred             cCCCCCcccC-----C-CCCcccccEeeccCCchhHHhhcccCccccccc-cccceEEEcccE
Q 045021          400 YDCPKLKYFS-----E-KGLPSSLLRLYIDECPLIEEKCRKDGEQYWDLL-THIPRVRIHLPV  455 (461)
Q Consensus       400 ~~C~~l~~~~-----~-~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~  455 (461)
                      .+| .++...     . ....++|+++++++|..-.+.+.. -...|... .++..+.+.++.
T Consensus       258 ~~n-~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  318 (319)
T cd00116         258 SCN-DITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQL-LAESLLEPGNELESLWVKDDS  318 (319)
T ss_pred             cCC-CCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHH-HHHHHhhcCCchhhcccCCCC
Confidence            995 554211     1 011368999999998655442221 12234333 466666665543

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.89  E-value=1.1e-09  Score=114.67  Aligned_cols=81  Identities=25%  Similarity=0.283  Sum_probs=52.7

Q ss_pred             CCccEEEecCCcCCccccccCCCCCCcCEEEecCCcCcccccC-CCCCCCccEEEEeecCCccccCcccccCCCCcccEE
Q 045021           29 CRLEYLILRYCKGLVKLPQSSLSLSSLREIEICRCHSLVSFPE-VALPSKLKKIEIRECDALKSLPEAWMCGTNSSLEIL  107 (461)
Q Consensus        29 ~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~-~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L  107 (461)
                      |.|++|++++|..+.++|..++.+-+||+|+++++ .+..+|. ++.+.+|.+|++..+..+..++......  ++|+.|
T Consensus       571 ~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t-~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L--~~Lr~L  647 (889)
T KOG4658|consen  571 PLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDT-GISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLEL--QSLRVL  647 (889)
T ss_pred             cceEEEECCCCCccCcCChHHhhhhhhhcccccCC-CccccchHHHHHHhhheeccccccccccccchhhhc--ccccEE
Confidence            77777777766666677777777777777777774 5566666 6667777777777655555554333333  667777


Q ss_pred             EeeCC
Q 045021          108 KIWSC  112 (461)
Q Consensus       108 ~l~~~  112 (461)
                      .+...
T Consensus       648 ~l~~s  652 (889)
T KOG4658|consen  648 RLPRS  652 (889)
T ss_pred             Eeecc
Confidence            66553

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.75  E-value=9.9e-10  Score=101.42  Aligned_cols=188  Identities=17%  Similarity=0.131  Sum_probs=105.9

Q ss_pred             hcCCCccceeeccccc--cceecccccCCCCCccEEEecCCCCCccCCC--CCCCCCCcceEeeccCccc-cccccccCC
Q 045021          213 LDNNTSLEMISILWCE--NLKFLPSGLHNLRQLQEIQLWGCENLVSFPE--GGLPCAKLSKLGIYRCERL-EALPKGLHN  287 (461)
Q Consensus       213 ~~~l~~L~~L~l~~~~--~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~--~~~~~~~L~~L~l~~c~~~-~~~~~~~~~  287 (461)
                      ...+++++.|+++.+-  ....+......+++|+.|+++.|. +.....  ....+++|+.|.+++|.-- .++......
T Consensus       142 ~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nr-l~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~  220 (505)
T KOG3207|consen  142 SKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNR-LSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLT  220 (505)
T ss_pred             hhhCCcceeecchhhhHHhHHHHHHHHHhcccchhccccccc-ccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHh
Confidence            3445666666666541  112222333456677777776652 221111  1123457777777777532 233334456


Q ss_pred             CCCccEEEecc-cCCCc--CCCCCCCCcceEEeecCchhhHHhhhhcccCCCCcCEEEEecCCCcccccCccccccCCCC
Q 045021          288 LKSLKKLRIGG-KLPSL--EEDGLPTNLHFLKIERNMEIWKSMIERGFHKFSSLRHLTIEGCDDDMVSFPPEDRRLGTTL  364 (461)
Q Consensus       288 l~~L~~L~l~~-~~~~l--~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~i~~~~~~~~~~~  364 (461)
                      +|+|+.|++.. ....+  .....+..|++|+|++|..++.... .....++.|+.|.++.|  ++.++..-..+-.+..
T Consensus       221 fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~-~~~~~l~~L~~Lnls~t--gi~si~~~d~~s~~kt  297 (505)
T KOG3207|consen  221 FPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQG-YKVGTLPGLNQLNLSST--GIASIAEPDVESLDKT  297 (505)
T ss_pred             CCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccc-cccccccchhhhhcccc--CcchhcCCCccchhhh
Confidence            77777777776 22111  1224556788888888886653322 24677888888888887  6665543212222223


Q ss_pred             CCCCCcceeecCCCCCCcccc--cchhhccCCcEEEecCCCCCc
Q 045021          365 PLPASLASLTIGDFPNLERLS--SSIVDLQNLKYLKLYDCPKLK  406 (461)
Q Consensus       365 ~~~~~L~~L~l~~~~~l~~i~--~~~~~~~~L~~L~l~~C~~l~  406 (461)
                      ..+++|+.|.+.. +.+.+++  ..+..+++|+.|.+.. +.+.
T Consensus       298 ~~f~kL~~L~i~~-N~I~~w~sl~~l~~l~nlk~l~~~~-n~ln  339 (505)
T KOG3207|consen  298 HTFPKLEYLNISE-NNIRDWRSLNHLRTLENLKHLRITL-NYLN  339 (505)
T ss_pred             cccccceeeeccc-Cccccccccchhhccchhhhhhccc-cccc
Confidence            4667888888888 5666554  3455667777777654 4444

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.68  E-value=1.2e-08  Score=85.85  Aligned_cols=58  Identities=22%  Similarity=0.310  Sum_probs=15.1

Q ss_pred             CCCcceeecCCCCCCcccccch-hhccCCcEEEecCCCCCcccCCC-C--CcccccEeeccCCc
Q 045021          367 PASLASLTIGDFPNLERLSSSI-VDLQNLKYLKLYDCPKLKYFSEK-G--LPSSLLRLYIDECP  426 (461)
Q Consensus       367 ~~~L~~L~l~~~~~l~~i~~~~-~~~~~L~~L~l~~C~~l~~~~~~-~--~~~~L~~L~i~~c~  426 (461)
                      ++.|++|++++ +.++.+...+ ..+|+|++|++++ ++|+++..- .  .+++|++|++.++|
T Consensus        63 L~~L~~L~L~~-N~I~~i~~~l~~~lp~L~~L~L~~-N~I~~l~~l~~L~~l~~L~~L~L~~NP  124 (175)
T PF14580_consen   63 LPRLKTLDLSN-NRISSISEGLDKNLPNLQELYLSN-NKISDLNELEPLSSLPKLRVLSLEGNP  124 (175)
T ss_dssp             -TT--EEE--S-S---S-CHHHHHH-TT--EEE-TT-S---SCCCCGGGGG-TT--EEE-TT-G
T ss_pred             hhhhhhcccCC-CCCCccccchHHhCCcCCEEECcC-CcCCChHHhHHHHcCCCcceeeccCCc
Confidence            34444444444 3444443222 2344555555544 444443331 1  13445555555444

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.67  E-value=1.1e-10  Score=102.41  Aligned_cols=181  Identities=17%  Similarity=0.197  Sum_probs=122.8

Q ss_pred             CcCEEEecCCcCcc--cccC-CCCCCCccEEEEeecCCccccCcccccCCCCcccEEEeeCCCCCcccccc---CCCCCc
Q 045021           54 SLREIEICRCHSLV--SFPE-VALPSKLKKIEIRECDALKSLPEAWMCGTNSSLEILKIWSCHSLPYIARV---QLPPSL  127 (461)
Q Consensus        54 ~L~~L~l~~~~~l~--~~~~-~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~---~~~~~L  127 (461)
                      .||+|||++. .++  .+-. +..|.+||.|++.|..--+.+...+...  .+|+.|+++.|..++....-   ..++.|
T Consensus       186 Rlq~lDLS~s-~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN--~~L~~lnlsm~sG~t~n~~~ll~~scs~L  262 (419)
T KOG2120|consen  186 RLQHLDLSNS-VITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKN--SNLVRLNLSMCSGFTENALQLLLSSCSRL  262 (419)
T ss_pred             hhHHhhcchh-heeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhcc--ccceeeccccccccchhHHHHHHHhhhhH
Confidence            5899999884 333  2222 5668899999998876333444444444  88999999999888876554   677889


Q ss_pred             cEEecccCCCceEeccCCCcccccccccccCccEEEEecCCCCeecccCCCCcchhhhcccCCCCCCccEEEEecCCchh
Q 045021          128 KRLDISHCDNIRTLTVEDGIQSSSRRYTSYLLEKLEIWDCPSLTCIFSKNELPATLESLEVGNQPPSLKSLNVWSCSKLE  207 (461)
Q Consensus       128 ~~L~l~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~  207 (461)
                      ..|+++.|...++.- ...+.     .-.++|+.|+++||.+.-   ....+      -...+.||+|..|++++|..+.
T Consensus       263 ~~LNlsWc~l~~~~V-tv~V~-----hise~l~~LNlsG~rrnl---~~sh~------~tL~~rcp~l~~LDLSD~v~l~  327 (419)
T KOG2120|consen  263 DELNLSWCFLFTEKV-TVAVA-----HISETLTQLNLSGYRRNL---QKSHL------STLVRRCPNLVHLDLSDSVMLK  327 (419)
T ss_pred             hhcCchHhhccchhh-hHHHh-----hhchhhhhhhhhhhHhhh---hhhHH------HHHHHhCCceeeeccccccccC
Confidence            999999887444321 01111     114578889998865431   11111      1224667999999999987776


Q ss_pred             h-hHHhhcCCCccceeeccccccce-ecccccCCCCCccEEEecCCC
Q 045021          208 S-IAERLDNNTSLEMISILWCENLK-FLPSGLHNLRQLQEIQLWGCE  252 (461)
Q Consensus       208 ~-~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~  252 (461)
                      . ....+..++.|++|+++.|+.+. +.--.+...|+|.+|++.+|-
T Consensus       328 ~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~v  374 (419)
T KOG2120|consen  328 NDCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCV  374 (419)
T ss_pred             chHHHHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEecccc
Confidence            5 34478889999999999997662 112235677999999999874

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.62  E-value=7.7e-09  Score=95.65  Aligned_cols=175  Identities=20%  Similarity=0.166  Sum_probs=111.0

Q ss_pred             CCCCCccEEEecCCCCCccCCC--CCCCCCCcceEeeccCcccccc---ccccCCCCCccEEEecc-cCCCcCC---CCC
Q 045021          238 HNLRQLQEIQLWGCENLVSFPE--GGLPCAKLSKLGIYRCERLEAL---PKGLHNLKSLKKLRIGG-KLPSLEE---DGL  308 (461)
Q Consensus       238 ~~l~~L~~L~l~~~~~l~~l~~--~~~~~~~L~~L~l~~c~~~~~~---~~~~~~l~~L~~L~l~~-~~~~l~~---~~~  308 (461)
                      .++++|+.+.+.++ .+.....  ....|++++.|+++.+- +..|   ......+|+|+.|.++. .+...-.   ...
T Consensus       118 sn~kkL~~IsLdn~-~V~~~~~~~~~k~~~~v~~LdLS~NL-~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~  195 (505)
T KOG3207|consen  118 SNLKKLREISLDNY-RVEDAGIEEYSKILPNVRDLDLSRNL-FHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLL  195 (505)
T ss_pred             hhHHhhhheeecCc-cccccchhhhhhhCCcceeecchhhh-HHhHHHHHHHHHhcccchhcccccccccCCccccchhh
Confidence            34567777777665 3333332  33456778888887742 2222   22456788888888887 3332221   135


Q ss_pred             CCCcceEEeecCchhhHHhhhhcccCCCCcCEEEEecCC-CcccccCccccccCCCCCCCCCcceeecCCCCCCcccc--
Q 045021          309 PTNLHFLKIERNMEIWKSMIERGFHKFSSLRHLTIEGCD-DDMVSFPPEDRRLGTTLPLPASLASLTIGDFPNLERLS--  385 (461)
Q Consensus       309 ~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~--  385 (461)
                      .+.|+.|.+++|. +......+.+..+|+|+.|++..|. ..+...+.         ..+..|++|++++. .+.+.+  
T Consensus       196 l~~lK~L~l~~CG-ls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~---------~i~~~L~~LdLs~N-~li~~~~~  264 (505)
T KOG3207|consen  196 LSHLKQLVLNSCG-LSWKDVQWILLTFPSLEVLYLEANEIILIKATST---------KILQTLQELDLSNN-NLIDFDQG  264 (505)
T ss_pred             hhhhheEEeccCC-CCHHHHHHHHHhCCcHHHhhhhcccccceecchh---------hhhhHHhhccccCC-cccccccc
Confidence            6788999999987 4334444567788999999999871 11112222         36678999999984 454444  


Q ss_pred             cchhhccCCcEEEecCCCCCcccCC--C------CCcccccEeeccCCc
Q 045021          386 SSIVDLQNLKYLKLYDCPKLKYFSE--K------GLPSSLLRLYIDECP  426 (461)
Q Consensus       386 ~~~~~~~~L~~L~l~~C~~l~~~~~--~------~~~~~L~~L~i~~c~  426 (461)
                      .....++.|+.|.++. ..++++-.  .      ...++|++|++..++
T Consensus       265 ~~~~~l~~L~~Lnls~-tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~  312 (505)
T KOG3207|consen  265 YKVGTLPGLNQLNLSS-TGIASIAEPDVESLDKTHTFPKLEYLNISENN  312 (505)
T ss_pred             cccccccchhhhhccc-cCcchhcCCCccchhhhcccccceeeecccCc
Confidence            4567788888888888 56666522  2      236788888888775

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.62  E-value=1.8e-09  Score=102.84  Aligned_cols=189  Identities=20%  Similarity=0.269  Sum_probs=130.5

Q ss_pred             cEEEEecCCchhhhHHhhcCCCccceeeccccccceecccccCCCCCccEEEecCCCCCccCCCCCCCCCCcceEeeccC
Q 045021          196 KSLNVWSCSKLESIAERLDNNTSLEMISILWCENLKFLPSGLHNLRQLQEIQLWGCENLVSFPEGGLPCAKLSKLGIYRC  275 (461)
Q Consensus       196 ~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c  275 (461)
                      ...++.. +.+..+|..+..+..|+.+.+..+ .+..+|..+.++..|.+++++.| .+..+|...+.+ -|+.|.+++ 
T Consensus        78 ~~aDlsr-NR~~elp~~~~~f~~Le~liLy~n-~~r~ip~~i~~L~~lt~l~ls~N-qlS~lp~~lC~l-pLkvli~sN-  152 (722)
T KOG0532|consen   78 VFADLSR-NRFSELPEEACAFVSLESLILYHN-CIRTIPEAICNLEALTFLDLSSN-QLSHLPDGLCDL-PLKVLIVSN-  152 (722)
T ss_pred             hhhhccc-cccccCchHHHHHHHHHHHHHHhc-cceecchhhhhhhHHHHhhhccc-hhhcCChhhhcC-cceeEEEec-
Confidence            3445555 355566767777777888887764 56777888888888999999887 667777766666 588887776 


Q ss_pred             ccccccccccCCCCCccEEEecccCCCcCCCCCCCCcceEEeecCchhhHHhhhhcccCCCCcCEEEEecCCCcccccCc
Q 045021          276 ERLEALPKGLHNLKSLKKLRIGGKLPSLEEDGLPTNLHFLKIERNMEIWKSMIERGFHKFSSLRHLTIEGCDDDMVSFPP  355 (461)
Q Consensus       276 ~~~~~~~~~~~~l~~L~~L~l~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~i~~  355 (461)
                      ++++.+|..++..+.|                     ..|+++.|...+...   .+..+.+|+.|.+..|  ++..+|+
T Consensus       153 Nkl~~lp~~ig~~~tl---------------------~~ld~s~nei~slps---ql~~l~slr~l~vrRn--~l~~lp~  206 (722)
T KOG0532|consen  153 NKLTSLPEEIGLLPTL---------------------AHLDVSKNEIQSLPS---QLGYLTSLRDLNVRRN--HLEDLPE  206 (722)
T ss_pred             CccccCCcccccchhH---------------------HHhhhhhhhhhhchH---HhhhHHHHHHHHHhhh--hhhhCCH
Confidence            5677777766655544                     445555555332111   4666778888888876  7778887


Q ss_pred             cccccCCCCCCCCCcceeecCCCCCCcccccchhhccCCcEEEecCCCCCcccCC----CCCcccccEeeccCC
Q 045021          356 EDRRLGTTLPLPASLASLTIGDFPNLERLSSSIVDLQNLKYLKLYDCPKLKYFSE----KGLPSSLLRLYIDEC  425 (461)
Q Consensus       356 ~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~L~~L~l~~C~~l~~~~~----~~~~~~L~~L~i~~c  425 (461)
                      + .       .--.|.+||++. +++..||..|.++..|++|.+++ |-+++-|+    .|...-.++|+++-|
T Consensus       207 E-l-------~~LpLi~lDfSc-Nkis~iPv~fr~m~~Lq~l~Len-NPLqSPPAqIC~kGkVHIFKyL~~qA~  270 (722)
T KOG0532|consen  207 E-L-------CSLPLIRLDFSC-NKISYLPVDFRKMRHLQVLQLEN-NPLQSPPAQICEKGKVHIFKYLSTQAC  270 (722)
T ss_pred             H-H-------hCCceeeeeccc-Cceeecchhhhhhhhheeeeecc-CCCCCChHHHHhccceeeeeeecchhc
Confidence            6 2       122588888885 78888888888888888888876 77777554    344455666777666

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.51  E-value=5.3e-08  Score=81.89  Aligned_cols=54  Identities=22%  Similarity=0.303  Sum_probs=8.9

Q ss_pred             CcceEeeccCccccccccccC-CCCCccEEEecc-cCCCcCCCCCCCCcceEEeecCc
Q 045021          266 KLSKLGIYRCERLEALPKGLH-NLKSLKKLRIGG-KLPSLEEDGLPTNLHFLKIERNM  321 (461)
Q Consensus       266 ~L~~L~l~~c~~~~~~~~~~~-~l~~L~~L~l~~-~~~~l~~~~~~~~L~~L~l~~~~  321 (461)
                      .+++|+++++ .++.+. .++ .+.+|+.|++++ .+..++....++.|++|++++|.
T Consensus        20 ~~~~L~L~~n-~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~   75 (175)
T PF14580_consen   20 KLRELNLRGN-QISTIE-NLGATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNR   75 (175)
T ss_dssp             ------------------S--TT-TT--EEE-TTS--S--TT----TT--EEE--SS-
T ss_pred             cccccccccc-cccccc-chhhhhcCCCEEECCCCCCccccCccChhhhhhcccCCCC
Confidence            4555555553 333332 232 344555555555 44444433344444444444444

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.49  E-value=3.1e-08  Score=87.37  Aligned_cols=131  Identities=15%  Similarity=0.242  Sum_probs=73.8

Q ss_pred             CCCcceEeeccCccccccccccCCCCCccEEEecc-cCCCcCCCCCCCCcceEEeecCchhhHHhhhhcccCCCCcCEEE
Q 045021          264 CAKLSKLGIYRCERLEALPKGLHNLKSLKKLRIGG-KLPSLEEDGLPTNLHFLKIERNMEIWKSMIERGFHKFSSLRHLT  342 (461)
Q Consensus       264 ~~~L~~L~l~~c~~~~~~~~~~~~l~~L~~L~l~~-~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~  342 (461)
                      +..|+++++++ +.++.+.+++.-.|.++.|+++. .+..+......++|+.||+++|. +.... . .-..+-++++|.
T Consensus       283 Wq~LtelDLS~-N~I~~iDESvKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~-Ls~~~-G-wh~KLGNIKtL~  358 (490)
T KOG1259|consen  283 WQELTELDLSG-NLITQIDESVKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNL-LAECV-G-WHLKLGNIKTLK  358 (490)
T ss_pred             Hhhhhhccccc-cchhhhhhhhhhccceeEEeccccceeeehhhhhcccceEeecccch-hHhhh-h-hHhhhcCEeeee
Confidence            34566666666 34555555555566666666666 55555545555666666666665 22111 1 123455666666


Q ss_pred             EecCCCcccccCccccccCCCCCCCCCcceeecCCCCCCcccc--cchhhccCCcEEEecCCCCCcccCC
Q 045021          343 IEGCDDDMVSFPPEDRRLGTTLPLPASLASLTIGDFPNLERLS--SSIVDLQNLKYLKLYDCPKLKYFSE  410 (461)
Q Consensus       343 l~~~~~~~~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~--~~~~~~~~L~~L~l~~C~~l~~~~~  410 (461)
                      ++.|  .++++..-        ..+-+|..||+++ ++++.+.  .+++++|-|+++.+.+ +.++.++.
T Consensus       359 La~N--~iE~LSGL--------~KLYSLvnLDl~~-N~Ie~ldeV~~IG~LPCLE~l~L~~-NPl~~~vd  416 (490)
T KOG1259|consen  359 LAQN--KIETLSGL--------RKLYSLVNLDLSS-NQIEELDEVNHIGNLPCLETLRLTG-NPLAGSVD  416 (490)
T ss_pred             hhhh--hHhhhhhh--------Hhhhhheeccccc-cchhhHHHhcccccccHHHHHhhcC-CCccccch
Confidence            6665  45554442        2444666777766 4555443  4566667777777766 55555444

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.47  E-value=3.3e-08  Score=87.20  Aligned_cols=125  Identities=19%  Similarity=0.274  Sum_probs=97.3

Q ss_pred             CCCCCccEEEecc-cCCCcCCC-CCCCCcceEEeecCchhhHHhhhhcccCCCCcCEEEEecCCCcccccCccccccCCC
Q 045021          286 HNLKSLKKLRIGG-KLPSLEED-GLPTNLHFLKIERNMEIWKSMIERGFHKFSSLRHLTIEGCDDDMVSFPPEDRRLGTT  363 (461)
Q Consensus       286 ~~l~~L~~L~l~~-~~~~l~~~-~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~i~~~~~~~~~~  363 (461)
                      ...+.|+++++++ .++.+++. ...|.++.|+++.|....  ..  .++.+++|.+|++++|  .+..+..  |-    
T Consensus       281 dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~--v~--nLa~L~~L~~LDLS~N--~Ls~~~G--wh----  348 (490)
T KOG1259|consen  281 DTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRT--VQ--NLAELPQLQLLDLSGN--LLAECVG--WH----  348 (490)
T ss_pred             chHhhhhhccccccchhhhhhhhhhccceeEEeccccceee--eh--hhhhcccceEeecccc--hhHhhhh--hH----
Confidence            4567899999999 77777766 677899999999988332  11  3778899999999997  5665554  21    


Q ss_pred             CCCCCCcceeecCCCCCCcccccchhhccCCcEEEecCCCCCcccCCC---CCcccccEeeccCCc
Q 045021          364 LPLPASLASLTIGDFPNLERLSSSIVDLQNLKYLKLYDCPKLKYFSEK---GLPSSLLRLYIDECP  426 (461)
Q Consensus       364 ~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~L~~L~l~~C~~l~~~~~~---~~~~~L~~L~i~~c~  426 (461)
                       ..+.++++|.+++ +.++++ .+++.+-+|..|++++ ++|+.+.+.   +.+|-|+.+.+.++|
T Consensus       349 -~KLGNIKtL~La~-N~iE~L-SGL~KLYSLvnLDl~~-N~Ie~ldeV~~IG~LPCLE~l~L~~NP  410 (490)
T KOG1259|consen  349 -LKLGNIKTLKLAQ-NKIETL-SGLRKLYSLVNLDLSS-NQIEELDEVNHIGNLPCLETLRLTGNP  410 (490)
T ss_pred             -hhhcCEeeeehhh-hhHhhh-hhhHhhhhheeccccc-cchhhHHHhcccccccHHHHHhhcCCC
Confidence             2466899999999 678888 7889999999999999 888887552   346788888888876

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.43  E-value=4.1e-09  Score=92.73  Aligned_cols=194  Identities=19%  Similarity=0.212  Sum_probs=110.0

Q ss_pred             CccEEEEecCCchh--hhHHhhcCCCccceeeccccccceecccccCCCCCccEEEecCCCCCccCCC--CCCCCCCcce
Q 045021          194 SLKSLNVWSCSKLE--SIAERLDNNTSLEMISILWCENLKFLPSGLHNLRQLQEIQLWGCENLVSFPE--GGLPCAKLSK  269 (461)
Q Consensus       194 ~L~~L~l~~~~~l~--~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~--~~~~~~~L~~  269 (461)
                      .|+.+++++. .++  .+...+..|.+|+.|++.+..--..+...++.-.+|+.++++.|.++.+...  ....|+.|..
T Consensus       186 Rlq~lDLS~s-~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~  264 (419)
T KOG2120|consen  186 RLQHLDLSNS-VITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE  264 (419)
T ss_pred             hhHHhhcchh-heeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence            4666666652 222  2233556667777777766533333344455566777777777766654332  3344566777


Q ss_pred             EeeccCcccccccc-cc-CCCCCccEEEecc---cC--CCcCC-CCCCCCcceEEeecCchhhHHhhhhcccCCCCcCEE
Q 045021          270 LGIYRCERLEALPK-GL-HNLKSLKKLRIGG---KL--PSLEE-DGLPTNLHFLKIERNMEIWKSMIERGFHKFSSLRHL  341 (461)
Q Consensus       270 L~l~~c~~~~~~~~-~~-~~l~~L~~L~l~~---~~--~~l~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L  341 (461)
                      |+++.|...+..-. .+ .--++|+.|++++   .+  ..+.. ...+|+|.+||+++|..+++.... .+..++.|++|
T Consensus       265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~-~~~kf~~L~~l  343 (419)
T KOG2120|consen  265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQ-EFFKFNYLQHL  343 (419)
T ss_pred             cCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHH-HHHhcchheee
Confidence            77777654432211 11 1235677777777   11  11211 256788999999999888764332 46788999999


Q ss_pred             EEecCCCcccccCccccccCCCCCCCCCcceeecCCCCCCcccccchhhccCCcE
Q 045021          342 TIEGCDDDMVSFPPEDRRLGTTLPLPASLASLTIGDFPNLERLSSSIVDLQNLKY  396 (461)
Q Consensus       342 ~l~~~~~~~~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~L~~  396 (461)
                      .++.|+.-.-..-.+ +      ...|+|.+|++.+|-.-....-....+++|+.
T Consensus       344 SlsRCY~i~p~~~~~-l------~s~psl~yLdv~g~vsdt~mel~~e~~~~lki  391 (419)
T KOG2120|consen  344 SLSRCYDIIPETLLE-L------NSKPSLVYLDVFGCVSDTTMELLKEMLSHLKI  391 (419)
T ss_pred             ehhhhcCCChHHeee-e------ccCcceEEEEeccccCchHHHHHHHhCccccc
Confidence            999983211111111 2      24568999999998543333222334555543

>PRK15386 type III secretion protein GogB; Provisional

Probab=98.43  E-value=6.8e-07  Score=84.50  Aligned_cols=134  Identities=26%  Similarity=0.470  Sum_probs=89.5

Q ss_pred             CCccEEEecCCcCCccccccCCCCCCcCEEEecCCcCcccccCCCCCCCccEEEEeecCCccccCcccccCCCCcccEEE
Q 045021           29 CRLEYLILRYCKGLVKLPQSSLSLSSLREIEICRCHSLVSFPEVALPSKLKKIEIRECDALKSLPEAWMCGTNSSLEILK  108 (461)
Q Consensus        29 ~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~  108 (461)
                      +++++|++++| .+..+|. +.  ++|++|.+++|..+..+|. ..+.+|++|++++|..+..+|        ++|+.|+
T Consensus        52 ~~l~~L~Is~c-~L~sLP~-LP--~sLtsL~Lsnc~nLtsLP~-~LP~nLe~L~Ls~Cs~L~sLP--------~sLe~L~  118 (426)
T PRK15386         52 RASGRLYIKDC-DIESLPV-LP--NELTEITIENCNNLTTLPG-SIPEGLEKLTVCHCPEISGLP--------ESVRSLE  118 (426)
T ss_pred             cCCCEEEeCCC-CCcccCC-CC--CCCcEEEccCCCCcccCCc-hhhhhhhheEccCcccccccc--------cccceEE
Confidence            99999999998 6788873 32  3799999999998887775 225799999999997787776        4578888


Q ss_pred             eeCCCCCccccccCCCCCccEEecccCCCce--EeccCCCcccccccccccCccEEEEecCCCCeecccCCCCcchhhhc
Q 045021          109 IWSCHSLPYIARVQLPPSLKRLDISHCDNIR--TLTVEDGIQSSSRRYTSYLLEKLEIWDCPSLTCIFSKNELPATLESL  186 (461)
Q Consensus       109 l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~--~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~  186 (461)
                      +.+ +....+.  ..+++|+.|.+.+.....  .++  ..+        -++|+.|.+.+|..+.  .| ..+|.     
T Consensus       119 L~~-n~~~~L~--~LPssLk~L~I~~~n~~~~~~lp--~~L--------PsSLk~L~Is~c~~i~--LP-~~LP~-----  177 (426)
T PRK15386        119 IKG-SATDSIK--NVPNGLTSLSINSYNPENQARID--NLI--------SPSLKTLSLTGCSNII--LP-EKLPE-----  177 (426)
T ss_pred             eCC-CCCcccc--cCcchHhheeccccccccccccc--ccc--------CCcccEEEecCCCccc--Cc-ccccc-----
Confidence            764 3322221  233678888875432111  111  111        1369999999877542  23 23444     


Q ss_pred             ccCCCCCCccEEEEecC
Q 045021          187 EVGNQPPSLKSLNVWSC  203 (461)
Q Consensus       187 ~~~~~~~~L~~L~l~~~  203 (461)
                             +|+.|.+..+
T Consensus       178 -------SLk~L~ls~n  187 (426)
T PRK15386        178 -------SLQSITLHIE  187 (426)
T ss_pred             -------cCcEEEeccc
Confidence                   4888888663

>PRK15386 type III secretion protein GogB; Provisional

Probab=98.42  E-value=1.3e-06  Score=82.51  Aligned_cols=136  Identities=29%  Similarity=0.497  Sum_probs=72.6

Q ss_pred             cCCCccceeeccccccceecccccCCCCCccEEEecCCCCCccCCCCCCCCCCcceEeeccCccccccccccCCCCCccE
Q 045021          214 DNNTSLEMISILWCENLKFLPSGLHNLRQLQEIQLWGCENLVSFPEGGLPCAKLSKLGIYRCERLEALPKGLHNLKSLKK  293 (461)
Q Consensus       214 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~l~~L~~  293 (461)
                      ..+.+++.|++++| .+..+|. +  .++|+.|.+++|..+..+|...  .++|++|++++|..+..+|.      +|+.
T Consensus        49 ~~~~~l~~L~Is~c-~L~sLP~-L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~------sLe~  116 (426)
T PRK15386         49 EEARASGRLYIKDC-DIESLPV-L--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPE------SVRS  116 (426)
T ss_pred             HHhcCCCEEEeCCC-CCcccCC-C--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccccc------ccce
Confidence            33567777777766 5555552 2  2457777777776666665432  23677777777766666553      4555


Q ss_pred             EEecc-cCCCcCCCCCCCCcceEEeecCchhhHHhhhhcccCC-CCcCEEEEecCCCcccccCccccccCCCCCCCCCcc
Q 045021          294 LRIGG-KLPSLEEDGLPTNLHFLKIERNMEIWKSMIERGFHKF-SSLRHLTIEGCDDDMVSFPPEDRRLGTTLPLPASLA  371 (461)
Q Consensus       294 L~l~~-~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l-~~L~~L~l~~~~~~~~~i~~~~~~~~~~~~~~~~L~  371 (461)
                      |++.. ....+  ...|++|+.|.+.++........   -..+ ++|++|.+.+|  ....+|..         .|.+|+
T Consensus       117 L~L~~n~~~~L--~~LPssLk~L~I~~~n~~~~~~l---p~~LPsSLk~L~Is~c--~~i~LP~~---------LP~SLk  180 (426)
T PRK15386        117 LEIKGSATDSI--KNVPNGLTSLSINSYNPENQARI---DNLISPSLKTLSLTGC--SNIILPEK---------LPESLQ  180 (426)
T ss_pred             EEeCCCCCccc--ccCcchHhheecccccccccccc---ccccCCcccEEEecCC--CcccCccc---------ccccCc
Confidence            55554 32222  23445666666643321100000   0112 36677777665  32233432         455666


Q ss_pred             eeecCC
Q 045021          372 SLTIGD  377 (461)
Q Consensus       372 ~L~l~~  377 (461)
                      .|+++.
T Consensus       181 ~L~ls~  186 (426)
T PRK15386        181 SITLHI  186 (426)
T ss_pred             EEEecc
Confidence            666655

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.29  E-value=5.7e-07  Score=87.79  Aligned_cols=178  Identities=24%  Similarity=0.299  Sum_probs=121.2

Q ss_pred             hcCCCccceeeccccccceecccccCCCC-CccEEEecCCCCCccCCCCCCCCCCcceEeeccCccccccccccCCCCCc
Q 045021          213 LDNNTSLEMISILWCENLKFLPSGLHNLR-QLQEIQLWGCENLVSFPEGGLPCAKLSKLGIYRCERLEALPKGLHNLKSL  291 (461)
Q Consensus       213 ~~~l~~L~~L~l~~~~~~~~~~~~~~~l~-~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~l~~L  291 (461)
                      +...+.++.|++.++ .+.+++....... +|+.|+++++ .+..++.....+++|+.|++++| .+..+|...+..++|
T Consensus       112 ~~~~~~l~~L~l~~n-~i~~i~~~~~~~~~nL~~L~l~~N-~i~~l~~~~~~l~~L~~L~l~~N-~l~~l~~~~~~~~~L  188 (394)
T COG4886         112 LLELTNLTSLDLDNN-NITDIPPLIGLLKSNLKELDLSDN-KIESLPSPLRNLPNLKNLDLSFN-DLSDLPKLLSNLSNL  188 (394)
T ss_pred             hhcccceeEEecCCc-ccccCccccccchhhccccccccc-chhhhhhhhhccccccccccCCc-hhhhhhhhhhhhhhh
Confidence            344467777777764 5566666666664 8888888876 55666545555668888888874 566666655578888


Q ss_pred             cEEEecc-cCCCcCCC-CCCCCcceEEeecCchhhHHhhhhcccCCCCcCEEEEecCCCcccccCccccccCCCCCCCCC
Q 045021          292 KKLRIGG-KLPSLEED-GLPTNLHFLKIERNMEIWKSMIERGFHKFSSLRHLTIEGCDDDMVSFPPEDRRLGTTLPLPAS  369 (461)
Q Consensus       292 ~~L~l~~-~~~~l~~~-~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~i~~~~~~~~~~~~~~~~  369 (461)
                      +.|++++ .+..++.. ..+..|+++.++++.......   .+..+.++..+.+.++  .+..++.. .      ..+++
T Consensus       189 ~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~---~~~~~~~l~~l~l~~n--~~~~~~~~-~------~~l~~  256 (394)
T COG4886         189 NNLDLSGNKISDLPPEIELLSALEELDLSNNSIIELLS---SLSNLKNLSGLELSNN--KLEDLPES-I------GNLSN  256 (394)
T ss_pred             hheeccCCccccCchhhhhhhhhhhhhhcCCcceecch---hhhhcccccccccCCc--eeeeccch-h------ccccc
Confidence            8888888 77777766 455568888888885233222   3566677777776665  55554333 3      25667


Q ss_pred             cceeecCCCCCCcccccchhhccCCcEEEecCCCCCccc
Q 045021          370 LASLTIGDFPNLERLSSSIVDLQNLKYLKLYDCPKLKYF  408 (461)
Q Consensus       370 L~~L~l~~~~~l~~i~~~~~~~~~L~~L~l~~C~~l~~~  408 (461)
                      ++.|++++ +.+.+++. ++...+++.|++.+ +.+...
T Consensus       257 l~~L~~s~-n~i~~i~~-~~~~~~l~~L~~s~-n~~~~~  292 (394)
T COG4886         257 LETLDLSN-NQISSISS-LGSLTNLRELDLSG-NSLSNA  292 (394)
T ss_pred             cceecccc-cccccccc-ccccCccCEEeccC-cccccc
Confidence            88888888 57777754 77888888888888 555433

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.10  E-value=5.8e-06  Score=56.82  Aligned_cols=57  Identities=23%  Similarity=0.353  Sum_probs=40.6

Q ss_pred             CCccEEEecCCcCCcccc-ccCCCCCCcCEEEecCCcCcccccC--CCCCCCccEEEEeecC
Q 045021           29 CRLEYLILRYCKGLVKLP-QSSLSLSSLREIEICRCHSLVSFPE--VALPSKLKKIEIRECD   87 (461)
Q Consensus        29 ~~L~~L~l~~~~~l~~l~-~~~~~l~~L~~L~l~~~~~l~~~~~--~~~l~~L~~L~l~~~~   87 (461)
                      |+|++|+++++ .+..+| ..|..+++|++|++++| .+..+++  +..+++|++|++++|.
T Consensus         1 p~L~~L~l~~n-~l~~i~~~~f~~l~~L~~L~l~~N-~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    1 PNLESLDLSNN-KLTEIPPDSFSNLPNLETLDLSNN-NLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TTESEEEETSS-TESEECTTTTTTGTTESEEEETSS-SESEEETTTTTTSTTESEEEETSSS
T ss_pred             CcCcEEECCCC-CCCccCHHHHcCCCCCCEeEccCC-ccCccCHHHHcCCCCCCEEeCcCCc
Confidence            56778888874 566665 46777888888888865 5666665  6677788888777754

...

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.08  E-value=4.3e-06  Score=81.68  Aligned_cols=87  Identities=16%  Similarity=0.257  Sum_probs=41.9

Q ss_pred             CCCCCCccEEEEeecCCccccCcccccCCCC-cccEEEeeCCCCCcccc-ccCCCCCccEEecccCCCceEeccCCCccc
Q 045021           72 VALPSKLKKIEIRECDALKSLPEAWMCGTNS-SLEILKIWSCHSLPYIA-RVQLPPSLKRLDISHCDNIRTLTVEDGIQS  149 (461)
Q Consensus        72 ~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~-~L~~L~l~~~~~l~~~~-~~~~~~~L~~L~l~~~~~~~~l~~~~~~~~  149 (461)
                      +.....++.|++.+.. +..++......  . +|+.|++++ +.+..++ ....+++|+.|+++++. +.+++  .....
T Consensus       112 ~~~~~~l~~L~l~~n~-i~~i~~~~~~~--~~nL~~L~l~~-N~i~~l~~~~~~l~~L~~L~l~~N~-l~~l~--~~~~~  184 (394)
T COG4886         112 LLELTNLTSLDLDNNN-ITDIPPLIGLL--KSNLKELDLSD-NKIESLPSPLRNLPNLKNLDLSFND-LSDLP--KLLSN  184 (394)
T ss_pred             hhcccceeEEecCCcc-cccCccccccc--hhhcccccccc-cchhhhhhhhhccccccccccCCch-hhhhh--hhhhh
Confidence            3444556666665533 55555443332  2 566666655 3444442 33555556666655543 34444  22211


Q ss_pred             ccccccccCccEEEEecCCCCee
Q 045021          150 SSRRYTSYLLEKLEIWDCPSLTC  172 (461)
Q Consensus       150 ~~~~~~~~~L~~L~l~~~~~l~~  172 (461)
                            .++|+.|++++ +.+++
T Consensus       185 ------~~~L~~L~ls~-N~i~~  200 (394)
T COG4886         185 ------LSNLNNLDLSG-NKISD  200 (394)
T ss_pred             ------hhhhhheeccC-Ccccc
Confidence                  33455555555 44444

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=98.05  E-value=2.2e-07  Score=93.27  Aligned_cols=137  Identities=23%  Similarity=0.399  Sum_probs=76.2

Q ss_pred             CCccEEEecCCcCCcc---ccccCCCCCCcCEEEecCCcCccc--ccC-CCCCCCccEEEEeec-CCccccC--cccccC
Q 045021           29 CRLEYLILRYCKGLVK---LPQSSLSLSSLREIEICRCHSLVS--FPE-VALPSKLKKIEIREC-DALKSLP--EAWMCG   99 (461)
Q Consensus        29 ~~L~~L~l~~~~~l~~---l~~~~~~l~~L~~L~l~~~~~l~~--~~~-~~~l~~L~~L~l~~~-~~l~~~~--~~~~~~   99 (461)
                      ..++.++...+.....   .-.....+++|+.|.+.+|..+..  +.. ...+++|+.|++++| ......+  ......
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~  240 (482)
T KOG1947|consen  161 ANLESLSLSCCGSLLLDKILLRLLSSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLS  240 (482)
T ss_pred             HHHheeeeecccccccHHHHHHHHhhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhh
Confidence            4555666655432111   111233467888888888766664  222 556788888888762 2222222  111222


Q ss_pred             CCCcccEEEeeCCCCCcccccc---CCCCCccEEecccCCCceEeccCCCcccccccccccCccEEEEecCCCCe
Q 045021          100 TNSSLEILKIWSCHSLPYIARV---QLPPSLKRLDISHCDNIRTLTVEDGIQSSSRRYTSYLLEKLEIWDCPSLT  171 (461)
Q Consensus       100 ~~~~L~~L~l~~~~~l~~~~~~---~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~  171 (461)
                      .+++|+++++++|..+++....   ..+++|+.|.+.+|..+++    .++......++  +|++|++++|..++
T Consensus       241 ~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~----~gl~~i~~~~~--~L~~L~l~~c~~~~  309 (482)
T KOG1947|consen  241 ICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTD----EGLVSIAERCP--SLRELDLSGCHGLT  309 (482)
T ss_pred             hcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccch----hHHHHHHHhcC--cccEEeeecCccch
Confidence            3477888888887766554332   3467777777777765433    33433333333  67777777766653

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.02  E-value=9.4e-06  Score=55.76  Aligned_cols=57  Identities=25%  Similarity=0.507  Sum_probs=32.2

Q ss_pred             CCcCEEEEecCCCcccccCccccccCCCCCCCCCcceeecCCCCCCcccc-cchhhccCCcEEEecC
Q 045021          336 SSLRHLTIEGCDDDMVSFPPEDRRLGTTLPLPASLASLTIGDFPNLERLS-SSIVDLQNLKYLKLYD  401 (461)
Q Consensus       336 ~~L~~L~l~~~~~~~~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~-~~~~~~~~L~~L~l~~  401 (461)
                      |+|++|++++|  .+..++.+.+      ..+++|++|++++ +.++.++ ..+..+++|++|++++
T Consensus         1 p~L~~L~l~~n--~l~~i~~~~f------~~l~~L~~L~l~~-N~l~~i~~~~f~~l~~L~~L~l~~   58 (61)
T PF13855_consen    1 PNLESLDLSNN--KLTEIPPDSF------SNLPNLETLDLSN-NNLTSIPPDAFSNLPNLRYLDLSN   58 (61)
T ss_dssp             TTESEEEETSS--TESEECTTTT------TTGTTESEEEETS-SSESEEETTTTTTSTTESEEEETS
T ss_pred             CcCcEEECCCC--CCCccCHHHH------cCCCCCCEeEccC-CccCccCHHHHcCCCCCCEEeCcC
Confidence            35566666665  5556655433      2455666666665 3555554 3455666666666665

...

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=97.98  E-value=8.7e-07  Score=80.11  Aligned_cols=110  Identities=15%  Similarity=0.158  Sum_probs=47.2

Q ss_pred             CCcceEEeecCchhhHH--hhhhcccCCCCcCEEEEecCCCcccccCccccccCCCCCCCCCcceeecCCCCCCcc----
Q 045021          310 TNLHFLKIERNMEIWKS--MIERGFHKFSSLRHLTIEGCDDDMVSFPPEDRRLGTTLPLPASLASLTIGDFPNLER----  383 (461)
Q Consensus       310 ~~L~~L~l~~~~~l~~~--~~~~~~~~l~~L~~L~l~~~~~~~~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~----  383 (461)
                      ++|+.+.++.|..-...  .....+.++++|+.|++.+|  .+..-..  ..+......+++|+.|.+++|. ++.    
T Consensus       185 ~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DN--tft~egs--~~LakaL~s~~~L~El~l~dcl-l~~~Ga~  259 (382)
T KOG1909|consen  185 PTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDN--TFTLEGS--VALAKALSSWPHLRELNLGDCL-LENEGAI  259 (382)
T ss_pred             cccceEEEecccccCchhHHHHHHHHhCCcceeeecccc--hhhhHHH--HHHHHHhcccchheeecccccc-cccccHH
Confidence            45555555555422111  11223555666666666665  1111000  0011111234456666666663 221    


Q ss_pred             -cccc-hhhccCCcEEEecCCCCCcccCC-------CCCcccccEeeccCCc
Q 045021          384 -LSSS-IVDLQNLKYLKLYDCPKLKYFSE-------KGLPSSLLRLYIDECP  426 (461)
Q Consensus       384 -i~~~-~~~~~~L~~L~l~~C~~l~~~~~-------~~~~~~L~~L~i~~c~  426 (461)
                       +... -+..|+|+.|.+.+ +.|+.-..       .. -+.|+.|++++|.
T Consensus       260 a~~~al~~~~p~L~vl~l~g-NeIt~da~~~la~~~~e-k~dL~kLnLngN~  309 (382)
T KOG1909|consen  260 AFVDALKESAPSLEVLELAG-NEITRDAALALAACMAE-KPDLEKLNLNGNR  309 (382)
T ss_pred             HHHHHHhccCCCCceeccCc-chhHHHHHHHHHHHHhc-chhhHHhcCCccc
Confidence             1111 12356666666666 44444111       11 3566666666653

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=97.96  E-value=6.2e-07  Score=90.07  Aligned_cols=104  Identities=23%  Similarity=0.315  Sum_probs=56.5

Q ss_pred             CcceEEeecCchhh-HHhhhhcccCCCCcCEEEEecCCCcccccCccccccCCCCCCCCCcceeecCCCCCC-cccccch
Q 045021          311 NLHFLKIERNMEIW-KSMIERGFHKFSSLRHLTIEGCDDDMVSFPPEDRRLGTTLPLPASLASLTIGDFPNL-ERLSSSI  388 (461)
Q Consensus       311 ~L~~L~l~~~~~l~-~~~~~~~~~~l~~L~~L~l~~~~~~~~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l-~~i~~~~  388 (461)
                      .++.+.+.++.... +.........+++++.+.+..+  +...                ....+.+.+|+.+ ..+....
T Consensus       336 ~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~--~~~~----------------~~~~~~l~gc~~l~~~l~~~~  397 (482)
T KOG1947|consen  336 SLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYC--GISD----------------LGLELSLRGCPNLTESLELRL  397 (482)
T ss_pred             cHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhh--hccC----------------cchHHHhcCCcccchHHHHHh
Confidence            44444444444332 2333334556666666666665  1111                1114556777776 3433223


Q ss_pred             hhccCCcEEEecCCCCCcccCCCCC---cccccEeeccCCchhHHhh
Q 045021          389 VDLQNLKYLKLYDCPKLKYFSEKGL---PSSLLRLYIDECPLIEEKC  432 (461)
Q Consensus       389 ~~~~~L~~L~l~~C~~l~~~~~~~~---~~~L~~L~i~~c~~l~~~~  432 (461)
                      ..+..++.|.+..|...+.......   ...++.+++.+|+.+....
T Consensus       398 ~~~~~l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~~~~~  444 (482)
T KOG1947|consen  398 CRSDSLRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVITLKS  444 (482)
T ss_pred             ccCCccceEecccCccccccchHHHhhhhhccccCCccCcccccchh
Confidence            3344488889988887776433211   4567888888887765554

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.95  E-value=2.1e-06  Score=88.03  Aligned_cols=160  Identities=17%  Similarity=0.152  Sum_probs=101.9

Q ss_pred             CCccEEEecCCCCCccC--CCCCCCCCCcceEeeccCccc-cccccccCCCCCccEEEecc-cCCCcCCCCCCCCcceEE
Q 045021          241 RQLQEIQLWGCENLVSF--PEGGLPCAKLSKLGIYRCERL-EALPKGLHNLKSLKKLRIGG-KLPSLEEDGLPTNLHFLK  316 (461)
Q Consensus       241 ~~L~~L~l~~~~~l~~l--~~~~~~~~~L~~L~l~~c~~~-~~~~~~~~~l~~L~~L~l~~-~~~~l~~~~~~~~L~~L~  316 (461)
                      .+|++|++++...+..-  ...+.-+|+|++|.+.+-... .++.....++|+|..||+++ ++..+...+..++|+.|.
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~GIS~LknLq~L~  201 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLSGISRLKNLQVLS  201 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCcHHHhccccHHHHh
Confidence            57899999875433211  124455789999999874322 22334567889999999999 888887778888999888


Q ss_pred             eecCchhhHHhhhhcccCCCCcCEEEEecCCCcccc--cCccccccCCCCCCCCCcceeecCCCCCCc-cc-ccchhhcc
Q 045021          317 IERNMEIWKSMIERGFHKFSSLRHLTIEGCDDDMVS--FPPEDRRLGTTLPLPASLASLTIGDFPNLE-RL-SSSIVDLQ  392 (461)
Q Consensus       317 l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~--i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~-~i-~~~~~~~~  392 (461)
                      +++-. +.....-..+-.+++|+.|+++.. .....  +...   +.+....+|.||.||.++ ..+. ++ ...+...|
T Consensus       202 mrnLe-~e~~~~l~~LF~L~~L~vLDIS~~-~~~~~~~ii~q---Ylec~~~LpeLrfLDcSg-Tdi~~~~le~ll~sH~  275 (699)
T KOG3665|consen  202 MRNLE-FESYQDLIDLFNLKKLRVLDISRD-KNNDDTKIIEQ---YLECGMVLPELRFLDCSG-TDINEEILEELLNSHP  275 (699)
T ss_pred             ccCCC-CCchhhHHHHhcccCCCeeecccc-ccccchHHHHH---HHHhcccCccccEEecCC-cchhHHHHHHHHHhCc
Confidence            87755 222222234667999999999985 22111  1110   112225678999999998 4443 22 24455677


Q ss_pred             CCcEEEecCCCCCc
Q 045021          393 NLKYLKLYDCPKLK  406 (461)
Q Consensus       393 ~L~~L~l~~C~~l~  406 (461)
                      +|+.+.+-+|....
T Consensus       276 ~L~~i~~~~~~~~~  289 (699)
T KOG3665|consen  276 NLQQIAALDCLALS  289 (699)
T ss_pred             cHhhhhhhhhhccc
Confidence            88887777654433

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=97.86  E-value=1.3e-06  Score=78.96  Aligned_cols=144  Identities=14%  Similarity=0.113  Sum_probs=87.4

Q ss_pred             CCCCCcceEEeecCchhhHHh--hhhcccCCCCcCEEEEecCCCcccccCccccccCCCCCCCCCcceeecCCCCCCcc-
Q 045021          307 GLPTNLHFLKIERNMEIWKSM--IERGFHKFSSLRHLTIEGCDDDMVSFPPEDRRLGTTLPLPASLASLTIGDFPNLER-  383 (461)
Q Consensus       307 ~~~~~L~~L~l~~~~~l~~~~--~~~~~~~l~~L~~L~l~~~~~~~~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~-  383 (461)
                      ..++.|+++...+|+--....  ....++..+.|+.+.++.|  ++..=...  .........++|+.||+.++ -.+. 
T Consensus       154 ~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN--~I~~eG~~--al~eal~~~~~LevLdl~DN-tft~e  228 (382)
T KOG1909|consen  154 ASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQN--GIRPEGVT--ALAEALEHCPHLEVLDLRDN-TFTLE  228 (382)
T ss_pred             CCCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecc--cccCchhH--HHHHHHHhCCcceeeecccc-hhhhH
Confidence            456789999998887433222  1234667799999999997  44321110  00011146789999999994 4432 


Q ss_pred             ----cccchhhccCCcEEEecCCCCCcccCC-------CCCcccccEeeccCCchhHHhhcccCccccccccccceEEEc
Q 045021          384 ----LSSSIVDLQNLKYLKLYDCPKLKYFSE-------KGLPSSLLRLYIDECPLIEEKCRKDGEQYWDLLTHIPRVRIH  452 (461)
Q Consensus       384 ----i~~~~~~~~~L~~L~l~~C~~l~~~~~-------~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~  452 (461)
                          +...+..+++|+.|.+.+|.- +.-..       ....++|+++++.+|....+....... ..-.-+++.-++++
T Consensus       229 gs~~LakaL~s~~~L~El~l~dcll-~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~-~~~ek~dL~kLnLn  306 (382)
T KOG1909|consen  229 GSVALAKALSSWPHLRELNLGDCLL-ENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAA-CMAEKPDLEKLNLN  306 (382)
T ss_pred             HHHHHHHHhcccchheeeccccccc-ccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHH-HHhcchhhHHhcCC
Confidence                225567788999999999853 33221       122689999999999754433221100 11114466667777


Q ss_pred             ccEEe
Q 045021          453 LPVVF  457 (461)
Q Consensus       453 ~~~~~  457 (461)
                      +|++.
T Consensus       307 gN~l~  311 (382)
T KOG1909|consen  307 GNRLG  311 (382)
T ss_pred             ccccc
Confidence            77763

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=97.83  E-value=2.9e-06  Score=83.16  Aligned_cols=176  Identities=19%  Similarity=0.203  Sum_probs=91.2

Q ss_pred             hhcCCCccceeeccccccceecccccCCCCCccEEEecCCCCCccCCCCCCCCCCcceEeeccCccccccccccCCCCCc
Q 045021          212 RLDNNTSLEMISILWCENLKFLPSGLHNLRQLQEIQLWGCENLVSFPEGGLPCAKLSKLGIYRCERLEALPKGLHNLKSL  291 (461)
Q Consensus       212 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~l~~L  291 (461)
                      .+..+.+|+.+++.++ .+..+...+..+++|++|++++| .+..+..... ++.|+.|++.+| .+..+. .+..+++|
T Consensus        90 ~l~~~~~l~~l~l~~n-~i~~i~~~l~~~~~L~~L~ls~N-~I~~i~~l~~-l~~L~~L~l~~N-~i~~~~-~~~~l~~L  164 (414)
T KOG0531|consen   90 HLSKLKSLEALDLYDN-KIEKIENLLSSLVNLQVLDLSFN-KITKLEGLST-LTLLKELNLSGN-LISDIS-GLESLKSL  164 (414)
T ss_pred             ccccccceeeeecccc-chhhcccchhhhhcchheecccc-ccccccchhh-ccchhhheeccC-cchhcc-CCccchhh
Confidence            4556667777777664 44444333556677777777776 4444443222 224777777763 344443 35556677


Q ss_pred             cEEEecc-cCCCcCC--CCCCCCcceEEeecCchhhHHhhhhcccCCCCcCEEEEecCCCcccccCccccccCCCCCCCC
Q 045021          292 KKLRIGG-KLPSLEE--DGLPTNLHFLKIERNMEIWKSMIERGFHKFSSLRHLTIEGCDDDMVSFPPEDRRLGTTLPLPA  368 (461)
Q Consensus       292 ~~L~l~~-~~~~l~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~i~~~~~~~~~~~~~~~  368 (461)
                      +.+++++ .+..++.  .....+++.+.+.++......    .+..+..+..+++..+  .+..+..-        ...+
T Consensus       165 ~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i~----~~~~~~~l~~~~l~~n--~i~~~~~l--------~~~~  230 (414)
T KOG0531|consen  165 KLLDLSYNRIVDIENDELSELISLEELDLGGNSIREIE----GLDLLKKLVLLSLLDN--KISKLEGL--------NELV  230 (414)
T ss_pred             hcccCCcchhhhhhhhhhhhccchHHHhccCCchhccc----chHHHHHHHHhhcccc--cceeccCc--------ccch
Confidence            7777776 5555555  245556666666666522111    1222223333344433  33222221        1111


Q ss_pred             --CcceeecCCCCCCcccccchhhccCCcEEEecCCCCCccc
Q 045021          369 --SLASLTIGDFPNLERLSSSIVDLQNLKYLKLYDCPKLKYF  408 (461)
Q Consensus       369 --~L~~L~l~~~~~l~~i~~~~~~~~~L~~L~l~~C~~l~~~  408 (461)
                        +|+.+++.+ +.+..++..+..+.++..+++.+ +++..+
T Consensus       231 ~~~L~~l~l~~-n~i~~~~~~~~~~~~l~~l~~~~-n~~~~~  270 (414)
T KOG0531|consen  231 MLHLRELYLSG-NRISRSPEGLENLKNLPVLDLSS-NRISNL  270 (414)
T ss_pred             hHHHHHHhccc-Cccccccccccccccccccchhh-cccccc
Confidence              266666666 45555444555666666666665 554443

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.79  E-value=2.1e-05  Score=69.79  Aligned_cols=182  Identities=15%  Similarity=0.131  Sum_probs=112.2

Q ss_pred             cCCCccceeeccccccc--eecccccCCCCCccEEEecCCCCCccCCCCCCCCCCcceEeeccCcc-ccccccccCCCCC
Q 045021          214 DNNTSLEMISILWCENL--KFLPSGLHNLRQLQEIQLWGCENLVSFPEGGLPCAKLSKLGIYRCER-LEALPKGLHNLKS  290 (461)
Q Consensus       214 ~~l~~L~~L~l~~~~~~--~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~-~~~~~~~~~~l~~  290 (461)
                      ..++.++.+++.+|...  .++...+.++|.|+.|+++.|+--..+.....+..+|++|-+.|..- .+.....+..+|.
T Consensus        68 ~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~  147 (418)
T KOG2982|consen   68 SSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPK  147 (418)
T ss_pred             HHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchh
Confidence            34667788888776322  34455567788888888887743333333445667888888876321 1222234567788


Q ss_pred             ccEEEecc-cCCCcC--C---CCCCCCcceEEeecCchhhHHhhhhcccCCCCcCEEEEecCCCcccccCccccccCCCC
Q 045021          291 LKKLRIGG-KLPSLE--E---DGLPTNLHFLKIERNMEIWKSMIERGFHKFSSLRHLTIEGCDDDMVSFPPEDRRLGTTL  364 (461)
Q Consensus       291 L~~L~l~~-~~~~l~--~---~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~i~~~~~~~~~~~  364 (461)
                      ++.|+++. ....+-  .   ..+.+.+++++..+|..............||++..+-+..|  .+++...+..+     
T Consensus       148 vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~--PlK~~s~ek~s-----  220 (418)
T KOG2982|consen  148 VTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEG--PLKTESSEKGS-----  220 (418)
T ss_pred             hhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecC--cccchhhcccC-----
Confidence            88888877 222221  1   13446788888888874443333334456899999988887  55555443111     


Q ss_pred             CCCCCcceeecCCCCCCcccc--cchhhccCCcEEEecCCC
Q 045021          365 PLPASLASLTIGDFPNLERLS--SSIVDLQNLKYLKLYDCP  403 (461)
Q Consensus       365 ~~~~~L~~L~l~~~~~l~~i~--~~~~~~~~L~~L~l~~C~  403 (461)
                      ...|.+--|.++. +++.++.  ..+.+|++|..|.+.+-+
T Consensus       221 e~~p~~~~LnL~~-~~idswasvD~Ln~f~~l~dlRv~~~P  260 (418)
T KOG2982|consen  221 EPFPSLSCLNLGA-NNIDSWASVDALNGFPQLVDLRVSENP  260 (418)
T ss_pred             CCCCcchhhhhcc-cccccHHHHHHHcCCchhheeeccCCc
Confidence            2345666666766 5666654  557788888888888733

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.70  E-value=5.9e-05  Score=47.53  Aligned_cols=41  Identities=20%  Similarity=0.284  Sum_probs=25.1

Q ss_pred             CCccEEEecCCcCCccccccCCCCCCcCEEEecCCcCcccccC
Q 045021           29 CRLEYLILRYCKGLVKLPQSSLSLSSLREIEICRCHSLVSFPE   71 (461)
Q Consensus        29 ~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~   71 (461)
                      ++|++|++++ +++.++|..+++|++|++|++++| .+.+++.
T Consensus         1 ~~L~~L~l~~-N~i~~l~~~l~~l~~L~~L~l~~N-~i~~i~~   41 (44)
T PF12799_consen    1 KNLEELDLSN-NQITDLPPELSNLPNLETLNLSNN-PISDISP   41 (44)
T ss_dssp             TT-SEEEETS-SS-SSHGGHGTTCTTSSEEEETSS-CCSBEGG
T ss_pred             CcceEEEccC-CCCcccCchHhCCCCCCEEEecCC-CCCCCcC
Confidence            4567777776 345666666677777777777776 4555543

...

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.68  E-value=1.2e-05  Score=82.66  Aligned_cols=127  Identities=20%  Similarity=0.160  Sum_probs=63.1

Q ss_pred             CCccceeeccccccc-eecccccCCCCCccEEEecCCCCCccCCCCCCCCCCcceEeeccCcccc-ccccccCCCCCccE
Q 045021          216 NTSLEMISILWCENL-KFLPSGLHNLRQLQEIQLWGCENLVSFPEGGLPCAKLSKLGIYRCERLE-ALPKGLHNLKSLKK  293 (461)
Q Consensus       216 l~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~~~-~~~~~~~~l~~L~~  293 (461)
                      +|.|++|.+.+-.-. .++.....++++|..|||+++ ++..+ .+...+++|+.|.+.+-..-. .--..+.++++|++
T Consensus       147 LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~T-nI~nl-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~v  224 (699)
T KOG3665|consen  147 LPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGT-NISNL-SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRV  224 (699)
T ss_pred             CcccceEEecCceecchhHHHHhhccCccceeecCCC-CccCc-HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCe
Confidence            455555555442111 122233344566666666654 34444 233344556555555422111 00013456777777


Q ss_pred             EEecc--cC-------CCcCCCCCCCCcceEEeecCchhhHHhhhhcccCCCCcCEEEEec
Q 045021          294 LRIGG--KL-------PSLEEDGLPTNLHFLKIERNMEIWKSMIERGFHKFSSLRHLTIEG  345 (461)
Q Consensus       294 L~l~~--~~-------~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~  345 (461)
                      ||+|.  ..       ..++....+|.|+.||.++.. +...........-|+|+.+...+
T Consensus       225 LDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTd-i~~~~le~ll~sH~~L~~i~~~~  284 (699)
T KOG3665|consen  225 LDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTD-INEEILEELLNSHPNLQQIAALD  284 (699)
T ss_pred             eeccccccccchHHHHHHHHhcccCccccEEecCCcc-hhHHHHHHHHHhCccHhhhhhhh
Confidence            77776  11       122334456788888888776 44444444455566666665443

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=97.58  E-value=2.7e-06  Score=81.77  Aligned_cols=99  Identities=24%  Similarity=0.354  Sum_probs=65.5

Q ss_pred             ccEEEEecCCchhhhHHhhcCCCccceeeccccccceecccccCCCCCccEEEecCCCCCccCCCCCCCCCCcceEeecc
Q 045021          195 LKSLNVWSCSKLESIAERLDNNTSLEMISILWCENLKFLPSGLHNLRQLQEIQLWGCENLVSFPEGGLPCAKLSKLGIYR  274 (461)
Q Consensus       195 L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~  274 (461)
                      |+.|-+.+ +.++.+|..++....|..|+.+.| .+..+|..++++.+|+.|.+..| .+..+|.....+ .|.+|+++.
T Consensus       145 Lkvli~sN-Nkl~~lp~~ig~~~tl~~ld~s~n-ei~slpsql~~l~slr~l~vrRn-~l~~lp~El~~L-pLi~lDfSc  220 (722)
T KOG0532|consen  145 LKVLIVSN-NKLTSLPEEIGLLPTLAHLDVSKN-EIQSLPSQLGYLTSLRDLNVRRN-HLEDLPEELCSL-PLIRLDFSC  220 (722)
T ss_pred             ceeEEEec-CccccCCcccccchhHHHhhhhhh-hhhhchHHhhhHHHHHHHHHhhh-hhhhCCHHHhCC-ceeeeeccc
Confidence            66666666 466666666666677777777765 55566666777777777777765 555666644444 566777663


Q ss_pred             CccccccccccCCCCCccEEEecc
Q 045021          275 CERLEALPKGLHNLKSLKKLRIGG  298 (461)
Q Consensus       275 c~~~~~~~~~~~~l~~L~~L~l~~  298 (461)
                       +++..+|-.|.+|+.|++|-+.+
T Consensus       221 -Nkis~iPv~fr~m~~Lq~l~Len  243 (722)
T KOG0532|consen  221 -NKISYLPVDFRKMRHLQVLQLEN  243 (722)
T ss_pred             -Cceeecchhhhhhhhheeeeecc
Confidence             56666777777777777777766

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.52  E-value=0.00014  Score=45.87  Aligned_cols=41  Identities=22%  Similarity=0.380  Sum_probs=29.2

Q ss_pred             CCcceeecCCCCCCcccccchhhccCCcEEEecCCCCCcccCC
Q 045021          368 ASLASLTIGDFPNLERLSSSIVDLQNLKYLKLYDCPKLKYFSE  410 (461)
Q Consensus       368 ~~L~~L~l~~~~~l~~i~~~~~~~~~L~~L~l~~C~~l~~~~~  410 (461)
                      ++|++|++++ +.+++++..+.++++|+.|++++ +.+++++.
T Consensus         1 ~~L~~L~l~~-N~i~~l~~~l~~l~~L~~L~l~~-N~i~~i~~   41 (44)
T PF12799_consen    1 KNLEELDLSN-NQITDLPPELSNLPNLETLNLSN-NPISDISP   41 (44)
T ss_dssp             TT-SEEEETS-SS-SSHGGHGTTCTTSSEEEETS-SCCSBEGG
T ss_pred             CcceEEEccC-CCCcccCchHhCCCCCCEEEecC-CCCCCCcC
Confidence            4678888888 47778876678888888888888 56776643

...

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=97.50  E-value=1.5e-05  Score=78.08  Aligned_cols=192  Identities=18%  Similarity=0.203  Sum_probs=120.9

Q ss_pred             CCCccceeeccccccceecccccCCCCCccEEEecCCCCCccCCCCCCCCCCcceEeeccCccccccccccCCCCCccEE
Q 045021          215 NNTSLEMISILWCENLKFLPSGLHNLRQLQEIQLWGCENLVSFPEGGLPCAKLSKLGIYRCERLEALPKGLHNLKSLKKL  294 (461)
Q Consensus       215 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~l~~L~~L  294 (461)
                      .+..++.+.+..+ .+..+-..+..+.+|+.+++.++ .+..+......+++|++|+++++ .++.+. .+..++.|+.|
T Consensus        70 ~l~~l~~l~l~~n-~i~~~~~~l~~~~~l~~l~l~~n-~i~~i~~~l~~~~~L~~L~ls~N-~I~~i~-~l~~l~~L~~L  145 (414)
T KOG0531|consen   70 SLTSLKELNLRQN-LIAKILNHLSKLKSLEALDLYDN-KIEKIENLLSSLVNLQVLDLSFN-KITKLE-GLSTLTLLKEL  145 (414)
T ss_pred             HhHhHHhhccchh-hhhhhhcccccccceeeeecccc-chhhcccchhhhhcchheecccc-cccccc-chhhccchhhh
Confidence            3455566665553 33333344667788999999887 55555553445678999999884 555553 36777778888


Q ss_pred             Eecc-cCCCcCCCCCCCCcceEEeecCchhhHHhhhhcccCCCCcCEEEEecCCCcccccCccccccCCCCCCCCCccee
Q 045021          295 RIGG-KLPSLEEDGLPTNLHFLKIERNMEIWKSMIERGFHKFSSLRHLTIEGCDDDMVSFPPEDRRLGTTLPLPASLASL  373 (461)
Q Consensus       295 ~l~~-~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~i~~~~~~~~~~~~~~~~L~~L  373 (461)
                      ++++ .+..+.....+++|+.+++++|.... ..... ...+.+++.+++.++  .+..+...        .....+..+
T Consensus       146 ~l~~N~i~~~~~~~~l~~L~~l~l~~n~i~~-ie~~~-~~~~~~l~~l~l~~n--~i~~i~~~--------~~~~~l~~~  213 (414)
T KOG0531|consen  146 NLSGNLISDISGLESLKSLKLLDLSYNRIVD-IENDE-LSELISLEELDLGGN--SIREIEGL--------DLLKKLVLL  213 (414)
T ss_pred             eeccCcchhccCCccchhhhcccCCcchhhh-hhhhh-hhhccchHHHhccCC--chhcccch--------HHHHHHHHh
Confidence            8888 77777776667888888888887322 11101 467788888888886  55554432        123344444


Q ss_pred             ecCCCCCCcccccchhhccC--CcEEEecCCCCCcccC-CCCCcccccEeeccCC
Q 045021          374 TIGDFPNLERLSSSIVDLQN--LKYLKLYDCPKLKYFS-EKGLPSSLLRLYIDEC  425 (461)
Q Consensus       374 ~l~~~~~l~~i~~~~~~~~~--L~~L~l~~C~~l~~~~-~~~~~~~L~~L~i~~c  425 (461)
                      ++.. +.+..+ ..+.....  |+.+++.+ +.+...+ .......+..|++.+.
T Consensus       214 ~l~~-n~i~~~-~~l~~~~~~~L~~l~l~~-n~i~~~~~~~~~~~~l~~l~~~~n  265 (414)
T KOG0531|consen  214 SLLD-NKISKL-EGLNELVMLHLRELYLSG-NRISRSPEGLENLKNLPVLDLSSN  265 (414)
T ss_pred             hccc-ccceec-cCcccchhHHHHHHhccc-Cccccccccccccccccccchhhc
Confidence            5555 444444 33333444  88889988 7777763 2223466666666643

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.48  E-value=0.00022  Score=59.92  Aligned_cols=104  Identities=14%  Similarity=0.220  Sum_probs=77.3

Q ss_pred             CCCcceEEeecCchhhHHhhhhcccCCCCcCEEEEecCCCcccccCccccccCCCCCCCCCcceeecCCCCCCcccc--c
Q 045021          309 PTNLHFLKIERNMEIWKSMIERGFHKFSSLRHLTIEGCDDDMVSFPPEDRRLGTTLPLPASLASLTIGDFPNLERLS--S  386 (461)
Q Consensus       309 ~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~--~  386 (461)
                      ..+...+|+.+|....    ...+.+++.|.+|.+.+|  ++..|... .+     ..+++|+.|.+.+ +.+..+.  .
T Consensus        41 ~d~~d~iDLtdNdl~~----l~~lp~l~rL~tLll~nN--rIt~I~p~-L~-----~~~p~l~~L~Ltn-Nsi~~l~dl~  107 (233)
T KOG1644|consen   41 LDQFDAIDLTDNDLRK----LDNLPHLPRLHTLLLNNN--RITRIDPD-LD-----TFLPNLKTLILTN-NSIQELGDLD  107 (233)
T ss_pred             ccccceecccccchhh----cccCCCccccceEEecCC--cceeeccc-hh-----hhccccceEEecC-cchhhhhhcc
Confidence            3466778888877322    224778889999999987  88888776 43     4677899999998 5666554  5


Q ss_pred             chhhccCCcEEEecCCCCCcccCCCCC-----cccccEeeccCCc
Q 045021          387 SIVDLQNLKYLKLYDCPKLKYFSEKGL-----PSSLLRLYIDECP  426 (461)
Q Consensus       387 ~~~~~~~L~~L~l~~C~~l~~~~~~~~-----~~~L~~L~i~~c~  426 (461)
                      .+..||+|++|.+-+ +.++.......     .|+|++||.+.=.
T Consensus       108 pLa~~p~L~~Ltll~-Npv~~k~~YR~yvl~klp~l~~LDF~kVt  151 (233)
T KOG1644|consen  108 PLASCPKLEYLTLLG-NPVEHKKNYRLYVLYKLPSLRTLDFQKVT  151 (233)
T ss_pred             hhccCCccceeeecC-CchhcccCceeEEEEecCcceEeehhhhh
Confidence            678899999999999 77777655322     6899999998754

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=97.46  E-value=1.4e-06  Score=86.02  Aligned_cols=122  Identities=25%  Similarity=0.272  Sum_probs=88.9

Q ss_pred             CccEEEecc-cCCCcCCC-CCCCCcceEEeecCchhhHHhhhhcccCCCCcCEEEEecCCCcccccCccccccCCCCCCC
Q 045021          290 SLKKLRIGG-KLPSLEED-GLPTNLHFLKIERNMEIWKSMIERGFHKFSSLRHLTIEGCDDDMVSFPPEDRRLGTTLPLP  367 (461)
Q Consensus       290 ~L~~L~l~~-~~~~l~~~-~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~i~~~~~~~~~~~~~~  367 (461)
                      .|.+.+.+. .+..++.. ...+.++.|+++.|. +++..   .+..++.|++|++++|  .+..+|.-  +     ..-
T Consensus       165 ~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk-~~~v~---~Lr~l~~LkhLDlsyN--~L~~vp~l--~-----~~g  231 (1096)
T KOG1859|consen  165 KLATASFSYNRLVLMDESLQLLPALESLNLSHNK-FTKVD---NLRRLPKLKHLDLSYN--CLRHVPQL--S-----MVG  231 (1096)
T ss_pred             hHhhhhcchhhHHhHHHHHHHHHHhhhhccchhh-hhhhH---HHHhcccccccccccc--hhcccccc--c-----hhh
Confidence            344444444 44445443 456789999999988 33222   5788999999999998  88888773  2     122


Q ss_pred             CCcceeecCCCCCCcccccchhhccCCcEEEecCCCCCcccCC---CCCcccccEeeccCCch
Q 045021          368 ASLASLTIGDFPNLERLSSSIVDLQNLKYLKLYDCPKLKYFSE---KGLPSSLLRLYIDECPL  427 (461)
Q Consensus       368 ~~L~~L~l~~~~~l~~i~~~~~~~~~L~~L~l~~C~~l~~~~~---~~~~~~L~~L~i~~c~~  427 (461)
                      -+|+.|.+++ |.++.+ .++.++.+|+.|++++ |-|...+.   -..+..|++|++.++|.
T Consensus       232 c~L~~L~lrn-N~l~tL-~gie~LksL~~LDlsy-Nll~~hseL~pLwsLs~L~~L~LeGNPl  291 (1096)
T KOG1859|consen  232 CKLQLLNLRN-NALTTL-RGIENLKSLYGLDLSY-NLLSEHSELEPLWSLSSLIVLWLEGNPL  291 (1096)
T ss_pred             hhheeeeecc-cHHHhh-hhHHhhhhhhccchhH-hhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence            3699999999 688888 6889999999999999 76666544   13367999999999874

>PLN03150 hypothetical protein; Provisional

Probab=97.43  E-value=0.00033  Score=72.20  Aligned_cols=107  Identities=21%  Similarity=0.241  Sum_probs=78.2

Q ss_pred             ccceeeccccccceecccccCCCCCccEEEecCCCCCccCCCCCCCCCCcceEeeccCccccccccccCCCCCccEEEec
Q 045021          218 SLEMISILWCENLKFLPSGLHNLRQLQEIQLWGCENLVSFPEGGLPCAKLSKLGIYRCERLEALPKGLHNLKSLKKLRIG  297 (461)
Q Consensus       218 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~l~~L~~L~l~  297 (461)
                      .++.|++.++.....+|..++.+++|+.|++++|.....+|.....+++|+.|++++|.....+|..++.+++|++|+++
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN  498 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence            36778888775556778888888999999998885545677666777889999998876666778888889999999998


Q ss_pred             c-cCC-CcCCC--CCCCCcceEEeecCchhh
Q 045021          298 G-KLP-SLEED--GLPTNLHFLKIERNMEIW  324 (461)
Q Consensus       298 ~-~~~-~l~~~--~~~~~L~~L~l~~~~~l~  324 (461)
                      + .+. .+|..  ....++..+++.+|..+.
T Consensus       499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc  529 (623)
T PLN03150        499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLC  529 (623)
T ss_pred             CCcccccCChHHhhccccCceEEecCCcccc
Confidence            8 443 44432  223456778888876443

>PLN03150 hypothetical protein; Provisional

Probab=97.39  E-value=0.0003  Score=72.52  Aligned_cols=86  Identities=14%  Similarity=0.091  Sum_probs=43.4

Q ss_pred             cCEEEecCCcCcccccC-CCCCCCccEEEEeecCCccccCcccccCCCCcccEEEeeCCCCCcccccc-CCCCCccEEec
Q 045021           55 LREIEICRCHSLVSFPE-VALPSKLKKIEIRECDALKSLPEAWMCGTNSSLEILKIWSCHSLPYIARV-QLPPSLKRLDI  132 (461)
Q Consensus        55 L~~L~l~~~~~l~~~~~-~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~~~L~~L~l  132 (461)
                      ++.|+|+++.--..+|. ++.+++|+.|+++++..-..+|..+...  ++|+.|+++++..-..++.. ..+++|+.|++
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l--~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~L  497 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSI--TSLEVLDLSYNSFNGSIPESLGQLTSLRILNL  497 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCC--CCCCEEECCCCCCCCCCchHHhcCCCCCEEEC
Confidence            55556655432223343 5556666666666654223455544444  56666666654322233332 55566666666


Q ss_pred             ccCCCceEec
Q 045021          133 SHCDNIRTLT  142 (461)
Q Consensus       133 ~~~~~~~~l~  142 (461)
                      +++.....+|
T Consensus       498 s~N~l~g~iP  507 (623)
T PLN03150        498 NGNSLSGRVP  507 (623)
T ss_pred             cCCcccccCC
Confidence            6654333444

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=97.32  E-value=3.6e-06  Score=83.16  Aligned_cols=203  Identities=21%  Similarity=0.229  Sum_probs=114.7

Q ss_pred             hhhhhhhhhcCCccEEEecCCcCCccc-cccCCCCCCcCEEEecCCcCcccccC-CCCCCCccEEEEeec-CC-------
Q 045021           19 DQQQQLCELSCRLEYLILRYCKGLVKL-PQSSLSLSSLREIEICRCHSLVSFPE-VALPSKLKKIEIREC-DA-------   88 (461)
Q Consensus        19 ~~l~~l~~~~~~L~~L~l~~~~~l~~l-~~~~~~l~~L~~L~l~~~~~l~~~~~-~~~l~~L~~L~l~~~-~~-------   88 (461)
                      .+++.+-.+.++++.|.+-..+.-.-- |-.+-.|+.|+.|.+++|+--. .-. ...-..|++|.-.+. ..       
T Consensus        74 ~qLq~i~d~lqkt~~lkl~~~pa~~pt~pi~ifpF~sLr~LElrg~~L~~-~~GL~~lr~qLe~LIC~~Sl~Al~~v~as  152 (1096)
T KOG1859|consen   74 EQLQRILDFLQKTKVLKLLPSPARDPTEPISIFPFRSLRVLELRGCDLST-AKGLQELRHQLEKLICHNSLDALRHVFAS  152 (1096)
T ss_pred             HHHHHHHHHHhhheeeeecccCCCCCCCCceeccccceeeEEecCcchhh-hhhhHHHHHhhhhhhhhccHHHHHHHHHH
Confidence            344444445688888888876542211 5567789999999999996322 211 122234444432211 00       


Q ss_pred             -ccccCcccccCCCCcccEEEeeCCCCCcccccc-CCCCCccEEecccCCCceEeccCCCcccccccccccCccEEEEec
Q 045021           89 -LKSLPEAWMCGTNSSLEILKIWSCHSLPYIARV-QLPPSLKRLDISHCDNIRTLTVEDGIQSSSRRYTSYLLEKLEIWD  166 (461)
Q Consensus        89 -l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~  166 (461)
                       +.++..... +  ..|...++++ +.++..... ..++.++.|++++++ +...   +.+..      ++.|++||+++
T Consensus       153 cggd~~ns~~-W--n~L~~a~fsy-N~L~~mD~SLqll~ale~LnLshNk-~~~v---~~Lr~------l~~LkhLDlsy  218 (1096)
T KOG1859|consen  153 CGGDISNSPV-W--NKLATASFSY-NRLVLMDESLQLLPALESLNLSHNK-FTKV---DNLRR------LPKLKHLDLSY  218 (1096)
T ss_pred             hccccccchh-h--hhHhhhhcch-hhHHhHHHHHHHHHHhhhhccchhh-hhhh---HHHHh------ccccccccccc
Confidence             111111111 1  3456666655 344433332 566788888888754 2211   23333      66788899988


Q ss_pred             CCCCeecccCCCCcchhhhcccCCCCCCccEEEEecCCchhhhHHhhcCCCccceeeccccccceecc--cccCCCCCcc
Q 045021          167 CPSLTCIFSKNELPATLESLEVGNQPPSLKSLNVWSCSKLESIAERLDNNTSLEMISILWCENLKFLP--SGLHNLRQLQ  244 (461)
Q Consensus       167 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~--~~~~~l~~L~  244 (461)
                       +.++. +|.......           +|+.|++++ +.++.+- .+.++.+|+.|++++|- +....  .-+..+..|+
T Consensus       219 -N~L~~-vp~l~~~gc-----------~L~~L~lrn-N~l~tL~-gie~LksL~~LDlsyNl-l~~hseL~pLwsLs~L~  282 (1096)
T KOG1859|consen  219 -NCLRH-VPQLSMVGC-----------KLQLLNLRN-NALTTLR-GIENLKSLYGLDLSYNL-LSEHSELEPLWSLSSLI  282 (1096)
T ss_pred             -chhcc-ccccchhhh-----------hheeeeecc-cHHHhhh-hHHhhhhhhccchhHhh-hhcchhhhHHHHHHHHH
Confidence             88877 555443332           488888888 4555443 45667788888888752 22221  1133456777


Q ss_pred             EEEecCCC
Q 045021          245 EIQLWGCE  252 (461)
Q Consensus       245 ~L~l~~~~  252 (461)
                      .|++.+|+
T Consensus       283 ~L~LeGNP  290 (1096)
T KOG1859|consen  283 VLWLEGNP  290 (1096)
T ss_pred             HHhhcCCc
Confidence            77787765

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.18  E-value=8.2e-05  Score=66.20  Aligned_cols=130  Identities=10%  Similarity=0.063  Sum_probs=67.9

Q ss_pred             CCCCCcceEeeccCcccccccc---ccCCCCCccEEEecc-----cCCCcCCCCCCCCcceEEeecCchhhHHhhhhccc
Q 045021          262 LPCAKLSKLGIYRCERLEALPK---GLHNLKSLKKLRIGG-----KLPSLEEDGLPTNLHFLKIERNMEIWKSMIERGFH  333 (461)
Q Consensus       262 ~~~~~L~~L~l~~c~~~~~~~~---~~~~l~~L~~L~l~~-----~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~  333 (461)
                      ..++.++.+++.++ .+..|.+   .+.++|.|++|+++.     .+..+|  ....+|++|.+.|.. +........+.
T Consensus        68 ~~~~~v~elDL~~N-~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp--~p~~nl~~lVLNgT~-L~w~~~~s~l~  143 (418)
T KOG2982|consen   68 SSVTDVKELDLTGN-LISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLP--LPLKNLRVLVLNGTG-LSWTQSTSSLD  143 (418)
T ss_pred             HHhhhhhhhhcccc-hhccHHHHHHHHhcCccceEeeccCCcCCCccccCc--ccccceEEEEEcCCC-CChhhhhhhhh
Confidence            34456777777773 4444432   446778888888777     223332  123577888777765 43333334466


Q ss_pred             CCCCcCEEEEecCCCccccc--CccccccCCCCCCCCCcceeecCCCCCCc--ccccchhhccCCcEEEecCC
Q 045021          334 KFSSLRHLTIEGCDDDMVSF--PPEDRRLGTTLPLPASLASLTIGDFPNLE--RLSSSIVDLQNLKYLKLYDC  402 (461)
Q Consensus       334 ~l~~L~~L~l~~~~~~~~~i--~~~~~~~~~~~~~~~~L~~L~l~~~~~l~--~i~~~~~~~~~L~~L~l~~C  402 (461)
                      .+|.++.|.++.|  ..+.+  ..+ +    .++..+.+++|++..|....  .+...-+.||++..+-+.+|
T Consensus       144 ~lP~vtelHmS~N--~~rq~n~Dd~-c----~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~  209 (418)
T KOG2982|consen  144 DLPKVTELHMSDN--SLRQLNLDDN-C----IEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEG  209 (418)
T ss_pred             cchhhhhhhhccc--hhhhhccccc-c----ccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecC
Confidence            6777888887776  33222  111 1    01223456666666553221  11122234556665555554

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=96.99  E-value=0.0021  Score=54.26  Aligned_cols=78  Identities=12%  Similarity=0.150  Sum_probs=36.1

Q ss_pred             CcCEEEecCCcCcccccCCCCCCCccEEEEeecCCccccCcccccCCCCcccEEEeeCCCCCcc---ccccCCCCCccEE
Q 045021           54 SLREIEICRCHSLVSFPEVALPSKLKKIEIRECDALKSLPEAWMCGTNSSLEILKIWSCHSLPY---IARVQLPPSLKRL  130 (461)
Q Consensus        54 ~L~~L~l~~~~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~---~~~~~~~~~L~~L  130 (461)
                      +...++|+++ .+..++.+..+++|..|.+.+++ +..+.+..... +++|+.|.+++ +++..   +.....+|.|+.|
T Consensus        43 ~~d~iDLtdN-dl~~l~~lp~l~rL~tLll~nNr-It~I~p~L~~~-~p~l~~L~Ltn-Nsi~~l~dl~pLa~~p~L~~L  118 (233)
T KOG1644|consen   43 QFDAIDLTDN-DLRKLDNLPHLPRLHTLLLNNNR-ITRIDPDLDTF-LPNLKTLILTN-NSIQELGDLDPLASCPKLEYL  118 (233)
T ss_pred             ccceeccccc-chhhcccCCCccccceEEecCCc-ceeeccchhhh-ccccceEEecC-cchhhhhhcchhccCCcccee
Confidence            4445555554 23334444455555555555533 44444443332 25555555554 22222   2222445555555


Q ss_pred             ecccC
Q 045021          131 DISHC  135 (461)
Q Consensus       131 ~l~~~  135 (461)
                      .+-+.
T Consensus       119 tll~N  123 (233)
T KOG1644|consen  119 TLLGN  123 (233)
T ss_pred             eecCC
Confidence            55553

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=96.54  E-value=0.00018  Score=63.21  Aligned_cols=85  Identities=16%  Similarity=0.180  Sum_probs=43.4

Q ss_pred             CCCCCcceEeeccCcccccccc----ccCCCCCccEEEecc-cCCCcCCC---------------CCCCCcceEEeecCc
Q 045021          262 LPCAKLSKLGIYRCERLEALPK----GLHNLKSLKKLRIGG-KLPSLEED---------------GLPTNLHFLKIERNM  321 (461)
Q Consensus       262 ~~~~~L~~L~l~~c~~~~~~~~----~~~~l~~L~~L~l~~-~~~~l~~~---------------~~~~~L~~L~l~~~~  321 (461)
                      ..||.|++++++++..-...|+    .+++-+.|++|.+++ ++..+...               ..-|.|+++....|+
T Consensus        89 lkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNR  168 (388)
T COG5238          89 LKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNR  168 (388)
T ss_pred             hcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccch
Confidence            3345556666555443332222    445566777777776 55544332               122567777666665


Q ss_pred             hhhHHhhh--hcccCCCCcCEEEEecC
Q 045021          322 EIWKSMIE--RGFHKFSSLRHLTIEGC  346 (461)
Q Consensus       322 ~l~~~~~~--~~~~~l~~L~~L~l~~~  346 (461)
                      -.......  ..+..-.+|+.+.+..|
T Consensus       169 lengs~~~~a~~l~sh~~lk~vki~qN  195 (388)
T COG5238         169 LENGSKELSAALLESHENLKEVKIQQN  195 (388)
T ss_pred             hccCcHHHHHHHHHhhcCceeEEeeec
Confidence            32222211  12333357777777776

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.29  E-value=0.0019  Score=56.73  Aligned_cols=110  Identities=21%  Similarity=0.192  Sum_probs=62.8

Q ss_pred             CCCCCccEEEecc-cCCCcCCCCCCCCcceEEeecCchhhHHhhhhcccCCCCcCEEEEecCCCc-ccccCccccccCCC
Q 045021          286 HNLKSLKKLRIGG-KLPSLEEDGLPTNLHFLKIERNMEIWKSMIERGFHKFSSLRHLTIEGCDDD-MVSFPPEDRRLGTT  363 (461)
Q Consensus       286 ~~l~~L~~L~l~~-~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~-~~~i~~~~~~~~~~  363 (461)
                      ..+..|+.|.+.+ .+.++.....+|+|+.|.++.|+.-........+..+|+|+++++++|..+ +.++..-       
T Consensus        40 d~~~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl-------  112 (260)
T KOG2739|consen   40 DEFVELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPL-------  112 (260)
T ss_pred             ccccchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchh-------
Confidence            3455566666666 555555555667888888877731111111223445588888888887222 2233332       


Q ss_pred             CCCCCCcceeecCCCCCCcccc----cchhhccCCcEEEecCCCC
Q 045021          364 LPLPASLASLTIGDFPNLERLS----SSIVDLQNLKYLKLYDCPK  404 (461)
Q Consensus       364 ~~~~~~L~~L~l~~~~~l~~i~----~~~~~~~~L~~L~l~~C~~  404 (461)
                       ..+.+|.+|++.+|.-.. +.    ..+.-+++|++|+-.++..
T Consensus       113 -~~l~nL~~Ldl~n~~~~~-l~dyre~vf~ll~~L~~LD~~dv~~  155 (260)
T KOG2739|consen  113 -KELENLKSLDLFNCSVTN-LDDYREKVFLLLPSLKYLDGCDVDG  155 (260)
T ss_pred             -hhhcchhhhhcccCCccc-cccHHHHHHHHhhhhccccccccCC
Confidence             345677888888774332 21    4456677888877776443

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=96.23  E-value=0.0013  Score=51.92  Aligned_cols=89  Identities=15%  Similarity=0.200  Sum_probs=55.6

Q ss_pred             cceEEeecCchhhHHhhhhcccCCCCcCEEEEecCCCcccccCccccccCCCCCCCCCcceeecCCCCCCcccccchhhc
Q 045021          312 LHFLKIERNMEIWKSMIERGFHKFSSLRHLTIEGCDDDMVSFPPEDRRLGTTLPLPASLASLTIGDFPNLERLSSSIVDL  391 (461)
Q Consensus       312 L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~  391 (461)
                      +..++++.|..+.-......+.....|+..++++|  +++.+|.. +.     ..++.+..+.+++ +++.++|+.+..+
T Consensus        29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N--~fk~fp~k-ft-----~kf~t~t~lNl~~-neisdvPeE~Aam   99 (177)
T KOG4579|consen   29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDN--GFKKFPKK-FT-----IKFPTATTLNLAN-NEISDVPEELAAM   99 (177)
T ss_pred             hhhcccccchhhHHHHHHHHHhCCceEEEEecccc--hhhhCCHH-Hh-----hccchhhhhhcch-hhhhhchHHHhhh
Confidence            44566666654422222224555666777777776  77777766 43     4556677777777 5777777667777


Q ss_pred             cCCcEEEecCCCCCcccCC
Q 045021          392 QNLKYLKLYDCPKLKYFSE  410 (461)
Q Consensus       392 ~~L~~L~l~~C~~l~~~~~  410 (461)
                      +.|+.|.++. +.+...|.
T Consensus       100 ~aLr~lNl~~-N~l~~~p~  117 (177)
T KOG4579|consen  100 PALRSLNLRF-NPLNAEPR  117 (177)
T ss_pred             HHhhhccccc-CccccchH
Confidence            7777777777 55555444

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.10  E-value=0.00054  Score=60.56  Aligned_cols=98  Identities=18%  Similarity=0.108  Sum_probs=62.7

Q ss_pred             CcceEEeecCchhhHHhhhhcccCCCCcCEEEEecCCCcccccCccccccCCCCCCCCCcceeecCCCCCCcccc--cch
Q 045021          311 NLHFLKIERNMEIWKSMIERGFHKFSSLRHLTIEGCDDDMVSFPPEDRRLGTTLPLPASLASLTIGDFPNLERLS--SSI  388 (461)
Q Consensus       311 ~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~--~~~  388 (461)
                      +.+.|+.+||. +++..   ....|+.|+.|.++-|  .+..+..-        .-+++|++|+++. +.+.++.  +.+
T Consensus        20 ~vkKLNcwg~~-L~DIs---ic~kMp~lEVLsLSvN--kIssL~pl--------~rCtrLkElYLRk-N~I~sldEL~YL   84 (388)
T KOG2123|consen   20 NVKKLNCWGCG-LDDIS---ICEKMPLLEVLSLSVN--KISSLAPL--------QRCTRLKELYLRK-NCIESLDELEYL   84 (388)
T ss_pred             HhhhhcccCCC-ccHHH---HHHhcccceeEEeecc--ccccchhH--------HHHHHHHHHHHHh-cccccHHHHHHH
Confidence            56667777776 44333   4667888888888876  56655442        3557788888887 5676664  456


Q ss_pred             hhccCCcEEEecCCCCCcccCCC------CCcccccEeecc
Q 045021          389 VDLQNLKYLKLYDCPKLKYFSEK------GLPSSLLRLYID  423 (461)
Q Consensus       389 ~~~~~L~~L~l~~C~~l~~~~~~------~~~~~L~~L~i~  423 (461)
                      .++|+|+.|.+.+.+....-+..      ..+|+|++||=.
T Consensus        85 knlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLDnv  125 (388)
T KOG2123|consen   85 KNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLDNV  125 (388)
T ss_pred             hcCchhhhHhhccCCcccccchhHHHHHHHHcccchhccCc
Confidence            77888888888775554443331      125677776543

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.83  E-value=0.0024  Score=53.97  Aligned_cols=89  Identities=19%  Similarity=0.346  Sum_probs=57.4

Q ss_pred             CcceEEeecCchhhHHhhhhcccCCCCcCEEEEecCCCcccccCccccccCCCCCCCCCcceeecCCCCCCcccc-cchh
Q 045021          311 NLHFLKIERNMEIWKSMIERGFHKFSSLRHLTIEGCDDDMVSFPPEDRRLGTTLPLPASLASLTIGDFPNLERLS-SSIV  389 (461)
Q Consensus       311 ~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~-~~~~  389 (461)
                      .++.++-+++....  .....+..++.++.|.+.+| ..+.+..-+-++     ...++|+.|++++|+++++-. ..+.
T Consensus       102 ~IeaVDAsds~I~~--eGle~L~~l~~i~~l~l~~c-k~~dD~~L~~l~-----~~~~~L~~L~lsgC~rIT~~GL~~L~  173 (221)
T KOG3864|consen  102 KIEAVDASDSSIMY--EGLEHLRDLRSIKSLSLANC-KYFDDWCLERLG-----GLAPSLQDLDLSGCPRITDGGLACLL  173 (221)
T ss_pred             eEEEEecCCchHHH--HHHHHHhccchhhhheeccc-cchhhHHHHHhc-----ccccchheeeccCCCeechhHHHHHH
Confidence            35666666665332  22224677788888888887 444332211121     356789999999999887654 6778


Q ss_pred             hccCCcEEEecCCCCCcc
Q 045021          390 DLQNLKYLKLYDCPKLKY  407 (461)
Q Consensus       390 ~~~~L~~L~l~~C~~l~~  407 (461)
                      ++++|+.|.+.+.+.+..
T Consensus       174 ~lknLr~L~l~~l~~v~~  191 (221)
T KOG3864|consen  174 KLKNLRRLHLYDLPYVAN  191 (221)
T ss_pred             HhhhhHHHHhcCchhhhc
Confidence            888888888887554443

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=95.26  E-value=0.0013  Score=51.97  Aligned_cols=58  Identities=14%  Similarity=0.224  Sum_probs=31.0

Q ss_pred             CCCCcCEEEecCCcCcccccC--CCCCCCccEEEEeecCCccccCcccccCCCCcccEEEeeCC
Q 045021           51 SLSSLREIEICRCHSLVSFPE--VALPSKLKKIEIRECDALKSLPEAWMCGTNSSLEILKIWSC  112 (461)
Q Consensus        51 ~l~~L~~L~l~~~~~l~~~~~--~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~  112 (461)
                      .-..|...+|+++ .+.++|+  ..+++-++.|+++++. +.++|.++..+  +.|+.|+++.+
T Consensus        51 ~~~el~~i~ls~N-~fk~fp~kft~kf~t~t~lNl~~ne-isdvPeE~Aam--~aLr~lNl~~N  110 (177)
T KOG4579|consen   51 KGYELTKISLSDN-GFKKFPKKFTIKFPTATTLNLANNE-ISDVPEELAAM--PALRSLNLRFN  110 (177)
T ss_pred             CCceEEEEecccc-hhhhCCHHHhhccchhhhhhcchhh-hhhchHHHhhh--HHhhhcccccC
Confidence            3344555555553 4455554  3444555566665533 55666655555  56666666553

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.23  E-value=0.00065  Score=60.06  Aligned_cols=78  Identities=23%  Similarity=0.243  Sum_probs=46.2

Q ss_pred             CcceEeeccCccccccccccCCCCCccEEEecc-cCCCcCCCCCCCCcceEEeecCchhhHHhhhhcccCCCCcCEEEEe
Q 045021          266 KLSKLGIYRCERLEALPKGLHNLKSLKKLRIGG-KLPSLEEDGLPTNLHFLKIERNMEIWKSMIERGFHKFSSLRHLTIE  344 (461)
Q Consensus       266 ~L~~L~l~~c~~~~~~~~~~~~l~~L~~L~l~~-~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~  344 (461)
                      +.++|+..||. +.++. ....++.|++|.++- .+.++.....|.+|++|.|+.|. +.+.....-+.++|+|+.|++.
T Consensus        20 ~vkKLNcwg~~-L~DIs-ic~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~-I~sldEL~YLknlpsLr~LWL~   96 (388)
T KOG2123|consen   20 NVKKLNCWGCG-LDDIS-ICEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNC-IESLDELEYLKNLPSLRTLWLD   96 (388)
T ss_pred             HhhhhcccCCC-ccHHH-HHHhcccceeEEeeccccccchhHHHHHHHHHHHHHhcc-cccHHHHHHHhcCchhhhHhhc
Confidence            45666666652 33331 245677777777776 66666666666677777776655 2222222335667777777776


Q ss_pred             cC
Q 045021          345 GC  346 (461)
Q Consensus       345 ~~  346 (461)
                      .|
T Consensus        97 EN   98 (388)
T KOG2123|consen   97 EN   98 (388)
T ss_pred             cC
Confidence            65

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=94.80  E-value=0.017  Score=50.91  Aligned_cols=86  Identities=17%  Similarity=0.250  Sum_probs=38.4

Q ss_pred             CCCCCCcCEEEecCCcCcccccCCCCCCCccEEEEeecCCccccCcccccCCCCcccEEEeeCCCCCcc---ccccCCCC
Q 045021           49 SLSLSSLREIEICRCHSLVSFPEVALPSKLKKIEIRECDALKSLPEAWMCGTNSSLEILKIWSCHSLPY---IARVQLPP  125 (461)
Q Consensus        49 ~~~l~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~---~~~~~~~~  125 (461)
                      ...+..|+.|.+.++ .+.++..+-.+++||.|.++.+..-......+....+|+|+++++++ ++++.   +.....+.
T Consensus        39 ~d~~~~le~ls~~n~-gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~-Nki~~lstl~pl~~l~  116 (260)
T KOG2739|consen   39 TDEFVELELLSVINV-GLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSG-NKIKDLSTLRPLKELE  116 (260)
T ss_pred             cccccchhhhhhhcc-ceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecC-Cccccccccchhhhhc
Confidence            334455555555554 33334334456666666666652111122222222236666666655 23332   22223344


Q ss_pred             CccEEecccCC
Q 045021          126 SLKRLDISHCD  136 (461)
Q Consensus       126 ~L~~L~l~~~~  136 (461)
                      +|..|++.+|.
T Consensus       117 nL~~Ldl~n~~  127 (260)
T KOG2739|consen  117 NLKSLDLFNCS  127 (260)
T ss_pred             chhhhhcccCC
Confidence            44455555443

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.99  E-value=0.0075  Score=51.01  Aligned_cols=67  Identities=15%  Similarity=0.208  Sum_probs=46.9

Q ss_pred             CCCCCCccEEEEeecCCccccCcccccCCCCcccEEEeeCCCCCcccccc--CCCCCccEEecccCCCc
Q 045021           72 VALPSKLKKIEIRECDALKSLPEAWMCGTNSSLEILKIWSCHSLPYIARV--QLPPSLKRLDISHCDNI  138 (461)
Q Consensus        72 ~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~--~~~~~L~~L~l~~~~~~  138 (461)
                      +..++.++.|.+.+|..+.+...+......++|+.|++++|+.+++....  ..+++|+.|.+.+.+.+
T Consensus       121 L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l~~v  189 (221)
T KOG3864|consen  121 LRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDLPYV  189 (221)
T ss_pred             HhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHHhcCchhh
Confidence            56677888888888887776655444444588888888888888775443  56677777777765433

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=93.80  E-value=0.19  Score=39.97  Aligned_cols=32  Identities=16%  Similarity=0.304  Sum_probs=11.0

Q ss_pred             CCcceEeeccCcccccccc-ccCCCCCccEEEecc
Q 045021          265 AKLSKLGIYRCERLEALPK-GLHNLKSLKKLRIGG  298 (461)
Q Consensus       265 ~~L~~L~l~~c~~~~~~~~-~~~~l~~L~~L~l~~  298 (461)
                      ++|+.+.+..  .++.++. .|.++++|+.+.+.+
T Consensus        12 ~~l~~i~~~~--~~~~I~~~~F~~~~~l~~i~~~~   44 (129)
T PF13306_consen   12 SNLESITFPN--TIKKIGENAFSNCTSLKSINFPN   44 (129)
T ss_dssp             TT--EEEETS--T--EE-TTTTTT-TT-SEEEESS
T ss_pred             CCCCEEEECC--CeeEeChhhcccccccccccccc
Confidence            3455555542  2222222 344455555555443

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=93.73  E-value=0.046  Score=28.42  Aligned_cols=20  Identities=40%  Similarity=0.439  Sum_probs=10.4

Q ss_pred             CccEEEecCCcCCccccccCC
Q 045021           30 RLEYLILRYCKGLVKLPQSSL   50 (461)
Q Consensus        30 ~L~~L~l~~~~~l~~l~~~~~   50 (461)
                      +|++|++++| .++.+|.+|+
T Consensus         1 ~L~~Ldls~n-~l~~ip~~~~   20 (22)
T PF00560_consen    1 NLEYLDLSGN-NLTSIPSSFS   20 (22)
T ss_dssp             TESEEEETSS-EESEEGTTTT
T ss_pred             CccEEECCCC-cCEeCChhhc
Confidence            3556666654 3445555443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=93.54  E-value=0.018  Score=51.14  Aligned_cols=38  Identities=13%  Similarity=0.119  Sum_probs=20.4

Q ss_pred             CCCCccEEEecCCCCCc----cCCCCCCCCCCcceEeeccCc
Q 045021          239 NLRQLQEIQLWGCENLV----SFPEGGLPCAKLSKLGIYRCE  276 (461)
Q Consensus       239 ~l~~L~~L~l~~~~~l~----~l~~~~~~~~~L~~L~l~~c~  276 (461)
                      .+.+|+.|++..|....    .+......++.|+.|.+.+|.
T Consensus       212 y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDCl  253 (388)
T COG5238         212 YSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCL  253 (388)
T ss_pred             HhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchh
Confidence            45666666666653211    112233445567777777774

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=93.27  E-value=0.46  Score=37.76  Aligned_cols=57  Identities=21%  Similarity=0.247  Sum_probs=19.9

Q ss_pred             hcCCCccceeeccccccceecc-cccCCCCCccEEEecCCCCCccCCC-CCCCCCCcceEeec
Q 045021          213 LDNNTSLEMISILWCENLKFLP-SGLHNLRQLQEIQLWGCENLVSFPE-GGLPCAKLSKLGIY  273 (461)
Q Consensus       213 ~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~  273 (461)
                      +..+.+|+.+.+..  .+..+. ..+.++++|+.+.+.+.  +..+.. ....+++++.+.+.
T Consensus         8 F~~~~~l~~i~~~~--~~~~I~~~~F~~~~~l~~i~~~~~--~~~i~~~~F~~~~~l~~i~~~   66 (129)
T PF13306_consen    8 FYNCSNLESITFPN--TIKKIGENAFSNCTSLKSINFPNN--LTSIGDNAFSNCKSLESITFP   66 (129)
T ss_dssp             TTT-TT--EEEETS--T--EE-TTTTTT-TT-SEEEESST--TSCE-TTTTTT-TT-EEEEET
T ss_pred             HhCCCCCCEEEECC--CeeEeChhhccccccccccccccc--ccccceeeeeccccccccccc
Confidence            44445555555542  222222 33445555555555442  333333 12223345555553

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=91.75  E-value=0.14  Score=24.69  Aligned_cols=9  Identities=22%  Similarity=0.564  Sum_probs=3.5

Q ss_pred             CcceeecCC
Q 045021          369 SLASLTIGD  377 (461)
Q Consensus       369 ~L~~L~l~~  377 (461)
                      +|+.|++++
T Consensus         2 ~L~~L~l~~   10 (17)
T PF13504_consen    2 NLRTLDLSN   10 (17)
T ss_dssp             T-SEEEETS
T ss_pred             ccCEEECCC
Confidence            344444444

...

>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily

Probab=89.43  E-value=0.23  Score=27.00  Aligned_cols=17  Identities=29%  Similarity=0.497  Sum_probs=10.9

Q ss_pred             ccCCcEEEecCCCCCcc
Q 045021          391 LQNLKYLKLYDCPKLKY  407 (461)
Q Consensus       391 ~~~L~~L~l~~C~~l~~  407 (461)
                      |++|++|++++|+++++
T Consensus         1 c~~L~~L~l~~C~~itD   17 (26)
T smart00367        1 CPNLRELDLSGCTNITD   17 (26)
T ss_pred             CCCCCEeCCCCCCCcCH
Confidence            45666666666666655

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	461
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-21
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-17
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-13
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-09
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	6e-11
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	1e-08
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	1e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-09
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-07
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-06
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-05
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	3e-08
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	1e-06
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	9e-08
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-07
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	6e-07
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	9e-08
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	8e-07
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-05
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-06
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-06
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	7e-05
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	9e-05
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-06
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	6e-06
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-05
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	6e-04
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	7e-06
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-05
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-05
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	9e-04
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-05
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	6e-04
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-05
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-05
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	4e-05
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	6e-05
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	6e-05
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-04
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-04
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-04
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-04
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-04
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-04
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	6e-04
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	6e-04
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	7e-04
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	8e-04

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 93.1 bits (232), Expect = 3e-21
 Identities = 68/320 (21%), Positives = 111/320 (34%), Gaps = 48/320 (15%)

Query: 31  LEYLILRYCKGLVKLPQSSLSLSSLREIEICRCHSLVSFPEVALPSKLKKIEIRECDALK 90
            E L  +    L                +  R HS          S   +IE R   ALK
Sbjct: 14  RENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQAN----SNNPQIETRTGRALK 69

Query: 91  SLPEAWMCGTNSSLEILKIWSCH--SLP------------YIAR---VQLPPS------L 127
           +  +     T      L++ S      P             I     ++LP +      L
Sbjct: 70  ATADLLEDATQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGL 129

Query: 128 KRLDISHCDNIRTLTVEDGIQSSSRRYTSYLLEKLEIWDCPSLTCIFSKNELPATLESLE 187
           + L ++    +R L       +         L +L I  CP LT      ELP  L S +
Sbjct: 130 ETLTLARN-PLRALPASIASLNR--------LRELSIRACPELT------ELPEPLASTD 174

Query: 188 VGNQPPSLKSLNVW--SCSKLESIAERLDNNTSLEMISILWCENLKFLPSGLHNLRQLQE 245
              +   L +L       + + S+   + N  +L+ + I     L  L   +H+L +L+E
Sbjct: 175 ASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNS-PLSALGPAIHHLPKLEE 233

Query: 246 IQLWGCENLVSFPEGGLPCAKLSKLGIYRCERLEALPKGLHNLKSLKKLRIGG--KLPSL 303
           + L GC  L ++P      A L +L +  C  L  LP  +H L  L+KL + G   L  L
Sbjct: 234 LDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRL 293

Query: 304 -EEDGLPTNLHFLKIERNME 322
                       + +  +++
Sbjct: 294 PSLIAQLPANCIILVPPHLQ 313

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 81.1 bits (201), Expect = 4e-17
 Identities = 69/310 (22%), Positives = 105/310 (33%), Gaps = 37/310 (11%)

Query: 126 SLKRLDISHCDNIRTLTVEDGIQSSSRRYTSYLLEKLEIWDCPSLTCIF----SKNELPA 181
             + L       +R     D +    R Y +        W   +         +   L A
Sbjct: 13  GRENLYFQGSTALRPY--HDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKA 70

Query: 182 TLESLEVGNQPPSLKSLNVWSCSKLESIAERLDNNTSLEMISILWCENLKFLPSGLHNLR 241
           T + LE   QP    +L       L    ++    + L+ ++I     L  LP  +    
Sbjct: 71  TADLLEDATQP-GRVALE-LRSVPLPQFPDQAFRLSHLQHMTIDAA-GLMELPDTMQQFA 127

Query: 242 QLQEIQLWGCENLVSFPEGGLPCAKLSKLGIYRCERLEALPKGL---------HNLKSLK 292
            L+ + L     L + P       +L +L I  C  L  LP+ L           L +L+
Sbjct: 128 GLETLTLARN-PLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQ 186

Query: 293 KLRIGG-KLPSL-EEDGLPTNLHFLKIERNMEIWKSMIERGFHKFSSLRHLTIEGCDDDM 350
            LR+    + SL        NL  LKI  +  +  S +    H    L  L + GC   +
Sbjct: 187 SLRLEWTGIRSLPASIANLQNLKSLKIRNS-PL--SALGPAIHHLPKLEELDLRGCTA-L 242

Query: 351 VSFPPEDRRLGTTLPLPASLASLTIGDFPNLERLSSSIVDLQNLKYLKLYDCPKLKYFSE 410
            ++PP            A L  L + D  NL  L   I  L  L+ L L  C  L     
Sbjct: 243 RNYPPIFGGR-------APLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSR--- 292

Query: 411 KGLPSSLLRL 420
             LPS + +L
Sbjct: 293 --LPSLIAQL 300

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 69.2 bits (170), Expect = 3e-13
 Identities = 54/296 (18%), Positives = 99/296 (33%), Gaps = 62/296 (20%)

Query: 28  SCRLEYLILRYCKGLVKLPQSSLSLSSLREIEICRCHSLVSFP-EVALPSKLKKIEIREC 86
                 L LR    L + P  +  LS L+ + I     L+  P  +   + L+ + +   
Sbjct: 80  QPGRVALELRSVP-LPQFPDQAFRLSHLQHMTIDAA-GLMELPDTMQQFAGLETLTLARN 137

Query: 87  DALKSLPEAWMCGTNSSLEILKIWSCHSL----PYIARVQLPP------SLKRLDISHCD 136
             L++LP +    + + L  L I +C  L      +A            +L+ L +    
Sbjct: 138 P-LRALPAS--IASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWT- 193

Query: 137 NIRTLTVEDGIQSSSRRYTSYLLEKLEIWDCPSLTCIFSKNELPATLESLEVGNQPPSLK 196
            IR+L        +        L+ L+I +   L+       L   +  L        L+
Sbjct: 194 GIRSLPASIANLQN--------LKSLKIRNS-PLS------ALGPAIHHLP------KLE 232

Query: 197 SLNVWSCSKLESIAERLDNNTSLEMISILWCENLKFLPSGLHNLRQLQEIQLWGCENLVS 256
            L++  C+ L +          L+ + +  C NL  LP  +H L QL++           
Sbjct: 233 ELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEK----------- 281

Query: 257 FPEGGLPCAKLSKLGIYRCERLEALPKGLHNLKSLKKLRIGGKLPSLEEDGLPTNL 312
                        L +  C  L  LP  +  L +   + +   L +  +   P   
Sbjct: 282 -------------LDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQHRPVAR 324

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 57.6 bits (140), Expect = 2e-09
 Identities = 39/246 (15%), Positives = 68/246 (27%), Gaps = 49/246 (19%)

Query: 206 LESIAERLDNNTSLEMISILWCENLKFLPSGLHNLRQLQEIQLWGCENLVSFPE------ 259
           + S      +++  E +       L+     L   ++          +            
Sbjct: 1   MGSSHHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQI 60

Query: 260 ---------------GGLPCAKLSKLGIYRCERLEALPKGLHNLKSLKKLRIGG-KLPSL 303
                                    L +     L   P     L  L+ + I    L  L
Sbjct: 61  ETRTGRALKATADLLEDATQPGRVALELRSV-PLPQFPDQAFRLSHLQHMTIDAAGLMEL 119

Query: 304 -EEDGLPTNLHFLKIERNM------EIWKSMIERGFHKFSSLRHLTIEGCDDDMVSFPPE 356
            +       L  L + RN        I            + LR L+I  C  ++   P  
Sbjct: 120 PDTMQQFAGLETLTLARNPLRALPASIA---------SLNRLRELSIRAC-PELTELPEP 169

Query: 357 --DRRLGTTLPLPASLASLTIGDFPNLERLSSSIVDLQNLKYLKLYDCPKLKYFSEKGLP 414
                         +L SL + ++  +  L +SI +LQNLK LK+ +   L       L 
Sbjct: 170 LASTDASGEHQGLVNLQSLRL-EWTGIRSLPASIANLQNLKSLKIRNS-PL-----SALG 222

Query: 415 SSLLRL 420
            ++  L
Sbjct: 223 PAIHHL 228

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 63.8 bits (155), Expect = 6e-11
 Identities = 60/358 (16%), Positives = 113/358 (31%), Gaps = 39/358 (10%)

Query: 95  AWMCGTNSSLEILKIWSCHSLPYIARVQLPPSLKRLDISHCDNIRTLTVEDGIQSSSRRY 154
           +W          + I +C+++     ++  P ++ +++    +     +   +      Y
Sbjct: 36  SWYEIERWCRRKVFIGNCYAVSPATVIRRFPKVRSVELKGKPHFADFNL---VPDGWGGY 92

Query: 155 TSYLLEKLEIWDCPSLTCIFSKNELPATLESLE-VGNQPPSLKSLNVWSCSKL--ESIAE 211
               +E +       L  I  K  +  T + LE +     + K L + SC     + +A 
Sbjct: 93  VYPWIEAMSSS-YTWLEEIRLKR-MVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAA 150

Query: 212 RLDNNTSLEMISILWCENLKFLPSGL----HNLRQLQEIQLWGCENLVSFPEGGLP---- 263
                 +L+ + +   +        L         L  + +    + VSF    L     
Sbjct: 151 IAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSF--SALERLVT 208

Query: 264 -CAKLSKLGIYRCERLEALPKGLHNLKSLKKLRIGGKLPSLEED---GLPTNLHFLKIER 319
            C  L  L + R   LE L   L     L++L  GG    +  D   GL   L   K  R
Sbjct: 209 RCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELR 268

Query: 320 NM----EIWKSMIERGFHKFSSLRHLTIEGC---DDDMVSFPPEDRRLGTTLPLPASLAS 372
            +    +   + +   +   S L  L +        D+V        L    P    L  
Sbjct: 269 CLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVK-------LLCQCP---KLQR 318

Query: 373 LTIGDFPNLERLSSSIVDLQNLKYLKLYDCPKLKYFSEKGLPSSLLRLYIDECPLIEE 430
           L + D+     L       ++L+ L+++            L    L      CP +E 
Sbjct: 319 LWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLES 376

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 56.4 bits (136), Expect = 1e-08
 Identities = 67/472 (14%), Positives = 143/472 (30%), Gaps = 88/472 (18%)

Query: 30  RLEYLILRYCK----GLVKLPQSSLSLSSLREIEICRCHSL--VSFPEVALP-SKLKKIE 82
            LE + L+        L  +   + S  + + + +  C          +A     LK+++
Sbjct: 106 WLEEIRLKRMVVTDDCLELI---AKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELD 162

Query: 83  IRECDALKSLPEAW--MCGTNSSLEILKIWSCH------SLPYIARVQLPPSLKRLDISH 134
           +RE D              T +SL  L I          +L  +      P+LK L ++ 
Sbjct: 163 LRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRC--PNLKSLKLNR 220

Query: 135 CDNIRTLTVEDGIQSSSRRYTSYLLEKLEIWDCPSLTCIFSKNELPATLESLEVGNQPPS 194
              +      + + +  +R     LE+L      +       + L   L           
Sbjct: 221 AVPL------EKLATLLQRAPQ--LEELGTGGYTAEVRPDVYSGLSVALSGC------KE 266

Query: 195 LKSLNVWSCSKLESIAERLDNNTSLEMISILWC----ENLKFLPSGLHNLRQLQEIQLWG 250
           L+ L+ +  +    +       + L  +++ +      +L  L      L++L  +    
Sbjct: 267 LRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIE 326

Query: 251 CENLVSFPEGGLPCAKLSKLGIYRCER-------------LEALPKGLHNLKSLKK---- 293
              L         C  L +L ++  E              L ++  G   L+S+      
Sbjct: 327 DAGLEVLAST---CKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQ 383

Query: 294 ------LRIGGKLPSLEEDGLPTNLHFLKIERNMEIWKSMIERGFHKFSSLRHLTIEGCD 347
                 + I    P++    L            +E               LR L++ G  
Sbjct: 384 MTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGLL 443

Query: 348 DDMVSFPPEDRRLGTTLPLPASLASLTIGDFPN----LERLSSSIVDLQNLKYLKLYDCP 403
            D          +GT       +  L++    +    +  + S      +L+ L++ DCP
Sbjct: 444 TD-----KVFEYIGTYAK---KMEMLSVAFAGDSDLGMHHVLSG---CDSLRKLEIRDCP 492

Query: 404 KLKYFSEKGLPS--SLLRLYIDECPLIEEKCRKDGEQYWDLLTHIPRVRIHL 453
                         ++  L++  C +    C+        L   +P++ + +
Sbjct: 493 FGDKALLANASKLETMRSLWMSSCSVSFGACKL-------LGQKMPKLNVEV 537

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 46.8 bits (111), Expect = 1e-05
 Identities = 55/378 (14%), Positives = 104/378 (27%), Gaps = 77/378 (20%)

Query: 4   DSCPKLQSLVAEEEKDQ-----QQQLCELSCRLEYLILRYCKGLVKLPQSSLSLSSLREI 58
           D+   L SL       +      ++L      L+ L L     L KL         L E+
Sbjct: 181 DTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEEL 240

Query: 59  EICRCHSLVSFPEVALPSKLKKIEIRECDALKSLPEAWMCGTNSSLEILKIWSCHSLPYI 118
                 + V     +  S      +  C  L+ L   W     + L  +           
Sbjct: 241 GTGGYTAEVRPDVYSGLSVA----LSGCKELRCLSGFW-DAVPAYLPAV----------- 284

Query: 119 ARVQLPPSLKRLDISHCDNIRTLTVEDGIQSSSRRYTSYLLEKLEIWDCPSLTCIFSKNE 178
               +   L  L++S+     T+   D ++   +              CP L  ++  + 
Sbjct: 285 --YSVCSRLTTLNLSYA----TVQSYDLVKLLCQ--------------CPKLQRLWVLDY 324

Query: 179 LPATLESLE-VGNQPPSLKSLNVWSCSKLESIAERLDNNTSLEMISILWCENLKFLPSG- 236
           +      LE + +    L+ L V+                 L  +S+  C  L+ +    
Sbjct: 325 I--EDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMG-CPKLESVLYFC 381

Query: 237 -----------LHNLRQLQEIQLWGCENLVSFPEGGLP-----------CAKLSKLGIYR 274
                        N   +   +L   E          P           C  L +L +  
Sbjct: 382 RQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG 441

Query: 275 CERLEALPKGLHNLKSLKKLRIGGKLPSLEEDGLP------TNLHFLKIERNMEIWKSMI 328
               +         K ++ L +        + G+        +L  L+I R+       +
Sbjct: 442 LLTDKVFEYIGTYAKKMEMLSVAF--AGDSDLGMHHVLSGCDSLRKLEI-RDCPFGDKAL 498

Query: 329 ERGFHKFSSLRHLTIEGC 346
                K  ++R L +  C
Sbjct: 499 LANASKLETMRSLWMSSC 516

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 61.0 bits (147), Expect = 6e-10
 Identities = 80/517 (15%), Positives = 150/517 (29%), Gaps = 170/517 (32%)

Query: 15  EEEKDQ-QQQLCELSCRLEYLILRYCKGLVKLPQSSLSLSSLREIEI------------- 60
            +   + +Q L EL    + +++    G  K   + ++L      ++             
Sbjct: 134 LQPYLKLRQALLELR-PAKNVLIDGVLGSGK---TWVALDVCLSYKVQCKMDFKIFWLNL 189

Query: 61  --CRCHSLVSFPEVALPSKLKKIEIRECDALKSLPEAWMCGTNSSLEILKIWS-CHSLPY 117
             C     V      L  ++        D   ++             +LK     + L  
Sbjct: 190 KNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLV 249

Query: 118 IARVQLPPSLKRLDISHCDNIRTL------TVEDGIQSSSRRYTSYLLEKLEIWDCPSLT 171
           +  VQ   +    ++  C   + L       V D + +++  + S  L+        +LT
Sbjct: 250 LLNVQNAKAWNAFNL-SC---KILLTTRFKQVTDFLSAATTTHIS--LDHHS----MTLT 299

Query: 172 -----CIFSK------NELPATLESLEVGNQPPSLKSL---------NVW------SCSK 205
                 +  K       +LP   E L      P   S+           W      +C K
Sbjct: 300 PDEVKSLLLKYLDCRPQDLPR--EVLTTN---PRRLSIIAESIRDGLATWDNWKHVNCDK 354

Query: 206 LESIAER-LDNNTSLEM--------------------ISILWCENLKFLP----SGLHNL 240
           L +I E  L+     E                     +S++W + +K       + LH  
Sbjct: 355 LTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKY 414

Query: 241 RQLQEIQLWGCENLVSFPEGGLPCAKLSKLGIYRCERLEALPKG-LHNLKSLKKLRIGGK 299
             +++      E+ +S P             IY   +++   +  LH    +    I   
Sbjct: 415 SLVEK---QPKESTISIP------------SIYLELKVKLENEYALHR-SIVDHYNIPKT 458

Query: 300 LPSLEEDGLPTNL----------HFLKIERNMEIWKSMIERGFHKFSSLRHLTIEGCDDD 349
             S  +D +P  L          H   IE               + +  R + +   D  
Sbjct: 459 FDS--DDLIPPYLDQYFYSHIGHHLKNIEHP------------ERMTLFRMVFL---DFR 501

Query: 350 MVSFPPEDRRL---GTTLPLPASLASLTIGDFPNLERLSSSIVDLQNLKYLKLYDCPKLK 406
            +     ++++    T      S+ +                  LQ LK+ K Y C    
Sbjct: 502 FL-----EQKIRHDSTAWNASGSILNT-----------------LQQLKFYKPYICDNDP 539

Query: 407 YFSEKGLPSSLLRLYIDECPLIEEKCRKDGEQYWDLL 443
            +        L+   +D  P IEE       +Y DLL
Sbjct: 540 KYER------LVNAILDFLPKIEENLICS--KYTDLL 568

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.9 bits (100), Expect = 2e-04
 Identities = 60/357 (16%), Positives = 104/357 (29%), Gaps = 77/357 (21%)

Query: 147 IQSSSRRYTSYLLEKL-EIWDCP----SLTCIFSKNELPATLESLEVGNQPPSLKSLN-- 199
            Q   +   S   +   + +DC         I SK E+        +     ++      
Sbjct: 14  HQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEID------HIIMSKDAVSGTLRL 67

Query: 200 VWS-CSKLESIAERLDNNTSLEMISILWCENLKFLPSGLHNLRQLQEIQLWGCENLVSFP 258
            W+  SK E + ++      L         N KFL S +   ++   +            
Sbjct: 68  FWTLLSKQEEMVQKF-VEEVLR-------INYKFLMSPIKTEQRQPSMMTRMYIEQRDRL 119

Query: 259 EGGLPCAKLSKLGIYRCERLEALPKGLHNLKSLKKLRI-G----GK-------LPSLE-E 305
                    +K  + R +    L + L  L+  K + I G    GK         S + +
Sbjct: 120 YNDNQ--VFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQ 177

Query: 306 DGLPTNLHFLKI------ERNMEIWKSMIERGFHKFSSLRHLTIEGCDDDMVSFPPEDRR 359
             +   + +L +      E  +E+ + ++ +    ++S R          + S   E RR
Sbjct: 178 CKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTS-RSDHSSNIKLRIHSIQAELRR 236

Query: 360 LGTTLPLPASLASL-------TIGDFPNLE-------RLSSSIVD-LQNLKYLKLYDCPK 404
           L  + P    L  L           F NL        R    + D L       +     
Sbjct: 237 LLKSKPYENCLLVLLNVQNAKAWNAF-NLSCKILLTTR-FKQVTDFLSAATTTHISLDHH 294

Query: 405 LKYFSE---KGLPSSLLRLYIDECP------------LIEEKCRKDGEQYWDLLTHI 446
               +    K L    L     + P            +I E  R DG   WD   H+
Sbjct: 295 SMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIR-DGLATWDNWKHV 350

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 58.0 bits (140), Expect = 4e-09
 Identities = 49/318 (15%), Positives = 96/318 (30%), Gaps = 56/318 (17%)

Query: 30  RLEYLILRYCKGLVKLPQSSL--SLSSLREIEICRCHSLVSFPEVALPSKLKKIEIRECD 87
           +++   + Y   L + P S+    +  L  ++      +          KL  +++    
Sbjct: 549 KIQIFYMGYNN-LEEFPASASLQKMVKLGLLDCVHNK-VRHLEAFGTNVKLTDLKLDYN- 605

Query: 88  ALKSLPEAWMCGTNSSLEILKIWSCH--SLPYIARVQLPPSLKRLDISHCDNIRTLTVED 145
            ++ +PE   C     +E L         +P I   +    +  +D S+   I +     
Sbjct: 606 QIEEIPE-DFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYN-KIGSEGRNI 663

Query: 146 GIQSSSRRYTSYLLEKL-------------EIWDCPSLTCI-FSKNELPATLESLEVGNQ 191
                  +  +     +                    ++ I  S N +  ++    +  +
Sbjct: 664 SCSMDDYKGIN--ASTVTLSYNEIQKFPTELFATGSPISTIILSNNLM-TSIPENSLKPK 720

Query: 192 PPSLKSLNVWSCSKLESIAERLDNNTSLEMISILWCENLKFLPSGLH--NLRQLQEIQLW 249
             + K+        L +I   L  N             L  L        L  L  + + 
Sbjct: 721 DGNYKNT-----YLLTTI--DLRFN------------KLTSLSDDFRATTLPYLSNMDVS 761

Query: 250 GCENLVSFPEGGLPCAKLSKLGIYRCERL------EALPKGLHNLKSLKKLRIGG-KLPS 302
                 SFP   L  ++L   GI               P G+    SL +L+IG   +  
Sbjct: 762 YN-CFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRK 820

Query: 303 LEEDGLPTNLHFLKIERN 320
           ++E   P  L+ L I  N
Sbjct: 821 VDEKLTP-QLYILDIADN 837

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 51.4 bits (123), Expect = 4e-07
 Identities = 57/422 (13%), Positives = 124/422 (29%), Gaps = 72/422 (17%)

Query: 31  LEYLILRYCKGLVKLPQSSLSLSSLREIEICRCHSLVSFPEV--ALPSKLKKIEIRECDA 88
            E     Y K       S  +L  L ++E+  C ++   P+    LP  L+ + I     
Sbjct: 469 WEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPE-LQSLNIACN-R 526

Query: 89  LKSLPEAWMCGTNSSLEILKIWSCHSLPYIARVQLPPSLKRLDISHCDNIRTLTVEDGIQ 148
             S  +     T  + +                   P ++   + +  N+        +Q
Sbjct: 527 GISAAQLKADWTRLADDEDTG---------------PKIQIFYMGYN-NLEEFPASASLQ 570

Query: 149 SSSRRYTSYLLEKLEIWDCPSLTCIFSKNELPATLESLEVGNQPPSLKSLNVWSCSKLES 208
                     + KL + DC         N++   LE+         L  L +    ++E 
Sbjct: 571 K---------MVKLGLLDC-------VHNKV-RHLEAFG---TNVKLTDLKLDYN-QIEE 609

Query: 209 I-AERLDNNTSLEMISILWCENLKFLPS--GLHNLRQLQEI-----QLWGCENLVSFPEG 260
           I  +       +E +       LK++P+     ++  +  +     ++      +S    
Sbjct: 610 IPEDFCAFTDQVEGLGFSHN-KLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMD 668

Query: 261 GLPCAKLSKLGIYRCERLEALPKG-LHNLKSLKKLRIGG-KLPSLEEDGLP--------- 309
                  S + +     ++  P         +  + +    + S+ E+ L          
Sbjct: 669 DYKGINASTVTLSYN-EIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNT 727

Query: 310 TNLHFLKIERNMEIWKSMIERGFHKFSSLRHLTIEGCDDDMVSFPPEDRRLG--TTLPLP 367
             L  + +  N ++     +        L ++ +        SFP +           + 
Sbjct: 728 YLLTTIDLRFN-KLTSLSDDFRATTLPYLSNMDVSYNC--FSSFPTQPLNSSQLKAFGI- 783

Query: 368 ASLASLTIGDFPNLERLSSSIVDLQNLKYLKLYDCPKLKYFSEKGLPSSLLRLYIDECPL 427
                        L +  + I    +L  L++     ++   EK  P  L  L I + P 
Sbjct: 784 --RHQRDAEGNRILRQWPTGITTCPSLIQLQIGSN-DIRKVDEKLTP-QLYILDIADNPN 839

Query: 428 IE 429
           I 
Sbjct: 840 IS 841

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 49.1 bits (117), Expect = 3e-06
 Identities = 48/314 (15%), Positives = 85/314 (27%), Gaps = 58/314 (18%)

Query: 122 QLPPSLKRLDISHCDNIRTLTVEDGIQSSSRRYTSYL--------LEKL--EIWDCPSLT 171
                L   D+   D I        I+  SR              +  +   I     L 
Sbjct: 393 DYDQRLNLSDLLQ-DAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQ 451

Query: 172 CIF-SKNELPATLESLEVGNQPPSLKSLNVWSCSKLESIAERLDNNTSLEMISILWCENL 230
            I+ + +       ++         +  N     + E+      N   L  + +  C N+
Sbjct: 452 IIYFANSPFTYDNIAV-------DWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNM 504

Query: 231 KFLPSGLHNLRQLQEIQLWG---------CENLVSFPEGGLPCAKLSKLGIYRCERLEAL 281
             LP  L++L +LQ + +             +     +      K+    +     LE  
Sbjct: 505 TQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYN-NLEEF 563

Query: 282 PK--GLHNLKSLKKLRIGG-KLPSLEEDGLPTNLHFLKIERNMEIWKSMIERGFHKFSSL 338
           P    L  +  L  L     K+  LE  G    L  LK++ N +I + + E        +
Sbjct: 564 PASASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYN-QI-EEIPEDFCAFTDQV 621

Query: 339 RHLTIEGCDDDMVSFPPEDRRLGTTLPLPASLASLT-----------IGDFPNLERLSSS 387
             L                 +L   +P   +  S+            IG        S  
Sbjct: 622 EGLGFSHN------------KL-KYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMD 668

Query: 388 IVDLQNLKYLKLYD 401
                N   + L  
Sbjct: 669 DYKGINASTVTLSY 682

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 46.4 bits (110), Expect = 2e-05
 Identities = 30/214 (14%), Positives = 60/214 (28%), Gaps = 24/214 (11%)

Query: 213 LDNNTSLEMISILWCENLKFLPSGLHNLRQLQEIQLWGCENLVSFPEGGLPCAKLSKLGI 272
           LDNN  +  +S+        +P  +  L +L+ +        VS    G           
Sbjct: 319 LDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEE 378

Query: 273 YRCE-RLEALPKGLHNLKSLKKLR-IGGKLPSLEEDGLPTNLHFLKIERNMEIWKS---- 326
            +   R+      L   + L     +   +    E         + ++       +    
Sbjct: 379 RKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRIT 438

Query: 327 MIERGFHKFSSLRHLTIEGCDDDMVSFPPEDRRLGTTLPLPASLASLTIGDFPNLERLSS 386
            I +   + + L+ +                    T   +               E    
Sbjct: 439 FISKAIQRLTKLQIIYFANS------------PF-TYDNIAVDWEDANSDYAKQYENEEL 485

Query: 387 SIVDLQNLKYLKLYDCPKLKYFSEKGLPSSLLRL 420
           S  +L++L  ++LY+CP +       LP  L  L
Sbjct: 486 SWSNLKDLTDVELYNCPNMTQ-----LPDFLYDL 514

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 54.9 bits (132), Expect = 3e-08
 Identities = 58/455 (12%), Positives = 137/455 (30%), Gaps = 83/455 (18%)

Query: 5   SCPKLQSL------VAEEEKDQQQQLCELSCRLEYLILRYC-------KGLVKLPQSSLS 51
            C K+++L       +E++     +L + +  LE L            K L  + ++   
Sbjct: 162 HCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNC-- 219

Query: 52  LSSLREIEICRCHSLVSFPEVALPSKLKKIEIRECDALKSLPEAWM-CGTNSSLEILKIW 110
             SL  +++     L         + L++      +    +PE +M       L  L + 
Sbjct: 220 -RSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLS 278

Query: 111 SCHSLPYIARVQLPPSLKRLDISHCDNIRTLTVEDGIQSSSRRYTSYLLEKLEIWDCPSL 170
                           +++LD+ +      L  ED      +      LE LE  +    
Sbjct: 279 YMGPNEMPILFPFAAQIRKLDLLYA----LLETEDHCTLIQK---CPNLEVLETRNVIGD 331

Query: 171 TCIFSKNELPATLESLEVGNQPPSLKSLNVWSCSKLESIAERLDNNTSLEMISILWCENL 230
             +              +      LK L +   +  + + +     +   +I++      
Sbjct: 332 RGLEV------------LAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALA----- 374

Query: 231 KFLPSGLHNLRQLQEIQLWGC----ENLVSFPEGGLPCAKLSKLGIYRCERL------EA 280
                     ++L+ + ++      E+L S             + + R ER+        
Sbjct: 375 -------QGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNG 427

Query: 281 LPKGLHNLKSLKKLRIGGKLPSLEEDGL------PTNLHFLKIERNMEIWKSMIERGFHK 334
           +   L   K L++     +   L + GL        N+ ++ +      +    + G  +
Sbjct: 428 VRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLG-----YVGESDEGLME 482

Query: 335 FSS----LRHLTIEGC---DDDMVSFPPEDRRLGTTLPLPASLASLTIGDFPNLERLSSS 387
           FS     L+ L + GC   +  + +   +   L   L +       ++     ++     
Sbjct: 483 FSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSL-RYLWV--QGYRASMTGQDLMQMARPY 539

Query: 388 IVDLQNLKYLKLYDCPKLKYFSEKGLPSSLLRLYI 422
                N++ +     P++    E         +  
Sbjct: 540 ----WNIELIPSRRVPEVNQQGEIREMEHPAHILA 570

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 49.9 bits (119), Expect = 1e-06
 Identities = 38/330 (11%), Positives = 100/330 (30%), Gaps = 26/330 (7%)

Query: 95  AWMCGTNSSLEILKIWSCHSLPYIARVQLPPSLKRLDISHCDNIRTLTVEDGIQSSSRRY 154
            W    + + E + +  C++       +  P+L+ L +          + + I  +   Y
Sbjct: 43  RWFKIDSETREHVTMALCYTATPDRLSRRFPNLRSLKLKGK---PRAAMFNLIPENWGGY 99

Query: 155 TSYLLEKLEIWDCPSLTCIFSKNELPATLESLEV--GNQPPSLKSLNVWSCSKL--ESIA 210
            +  + ++   +   L  +  +  +  +   L+     +   L++L +  CS    + + 
Sbjct: 100 VTPWVTEISN-NLRQLKSVHFRR-MIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLL 157

Query: 211 ERLDNNTSLEMISILWCENLKFLPSGLH----NLRQLQEIQLWGCE----NLVSFPEGGL 262
             + +   ++ + +      +     LH    +   L+ +  +  E    +         
Sbjct: 158 SIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIAR 217

Query: 263 PCAKLSKLGIYRCERLE--ALPKGLHNLKSLKKLRIGGKLPSLEEDGLPTNLHFLKIERN 320
            C  L  + +   E LE     K   NL+      +   +   E+         L     
Sbjct: 218 NCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGL 277

Query: 321 MEIWKSMIERGFHKFSSLRHLTIEGCDDDMVSFPPEDRRLGTTLPLPASLASLTIGDFPN 380
             +  + +   F   + +R L +     +            T +    +L  L   +   
Sbjct: 278 SYMGPNEMPILFPFAAQIRKLDLLYALLE-------TEDHCTLIQKCPNLEVLETRNVIG 330

Query: 381 LERLSSSIVDLQNLKYLKLYDCPKLKYFSE 410
              L       + LK L++      +   +
Sbjct: 331 DRGLEVLAQYCKQLKRLRIERGADEQGMED 360

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 53.5 bits (129), Expect = 9e-08
 Identities = 47/445 (10%), Positives = 116/445 (26%), Gaps = 93/445 (20%)

Query: 30  RLEYLILRYCKGLVKLPQSSLSLSSLREI------------EICRCHSLV-------SFP 70
            L    +        + +SS       +I             + R   L         F 
Sbjct: 160 DLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFV 219

Query: 71  EVALPSKLKKIEIRECDALKSLPEAWMCGTNSSLEILKIWSCHSLPYIARVQLP------ 124
              +    +          K+    W       L  +++++C +L      +LP      
Sbjct: 220 AENICEAWENENSEYAQQYKTEDLKW--DNLKDLTDVEVYNCPNL-----TKLPTFLKAL 272

Query: 125 PSLKRLDISHCDNIRTLTVEDGIQSSSRRYTSYLLEKLEIWDCPSLTCIFSKNELPATLE 184
           P ++ ++++    I    ++D  Q+ +       ++ + I    +L        +  +L+
Sbjct: 273 PEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYN-NLKTF----PVETSLQ 327

Query: 185 SLEVGNQPPSLKSLNVWSCSKLESIAERLDNNTSLEMISILWCENLKFLPSGL-HNLRQL 243
            +        L  L      +LE       +   L  ++ L    +  +P+       Q+
Sbjct: 328 KM------KKLGMLECLYN-QLEGKLPAFGSEIKLASLN-LAYNQITEIPANFCGFTEQV 379

Query: 244 QEIQLWGCENLVSFPEGGLP--CAKLSKLGIYR-------CERLEALPKGLHNLKSLKKL 294
           + +       L   P        + +S +            +  + L        ++  +
Sbjct: 380 ENLSFAHN-KLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSI 438

Query: 295 RIGG-KLPSL--EEDGLPTNLHFLKIERNM-----EIWKSMIERGFHKFSSLRHLTIEGC 346
            +   ++     E     + L  + +  NM     +         F     L  + +   
Sbjct: 439 NLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFN 498

Query: 347 DDDMVSFPPEDRRLGTTLPLPASLASLTIGDFPNLERLS----------SSIVDLQNLKY 396
                       +L T L              P L  +           +  ++   LK 
Sbjct: 499 ------------KL-TKLS-----DDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKG 540

Query: 397 LKLYDCPKLKYFSEKG-LPSSLLRL 420
             + +    +        P  +   
Sbjct: 541 FGIRNQRDAQGNRTLREWPEGITLC 565

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 51.6 bits (124), Expect = 4e-07
 Identities = 59/414 (14%), Positives = 119/414 (28%), Gaps = 93/414 (22%)

Query: 30  RLEYLILRYCKGLVKLPQSSLSLSSLREIEICRCHSLVSFPEVALPSKLKKIEIRECDAL 89
           R+  L L       ++P +   L+ L  + +   H       +  P  +           
Sbjct: 82  RVTGLSLEGFGASGRVPDAIGQLTELEVLAL-GSHGEKVNERLFGPKGI----------- 129

Query: 90  KSLPEAWMCGTNSSLEILKIWSCH----SLPYIARVQLPPSLKRLDISHCDNIRTLTVED 145
                      N S E  +    H     + Y  R      L +  I+     +++    
Sbjct: 130 ---------SANMSDEQKQKMRMHYQKTFVDYDPREDFS-DLIKDCINSDPQQKSIKKSS 179

Query: 146 GIQSSSRRYTSY--LLEKL--EIWDCPSLTCIF-SKNELPATLESLEVGNQPPSLKSLNV 200
            I     +       +  +   +     L   +   +   A        N   + ++ N 
Sbjct: 180 RITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAE-------NICEAWENENS 232

Query: 201 WSCSKLESIAERLDNNTSLEMISILWCENLKFLPSGLHNLRQLQEIQLWGCENLVSFPEG 260
               + ++   + DN   L  + +  C NL  LP+ L  L ++Q I +      +S  + 
Sbjct: 233 EYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACN-RGISGEQL 291

Query: 261 GLPCAKLSKLGIYRCERLEAL------------PKGLHNLKSLKKL-----RIGGKLPSL 303
                 L+   +   E+++ +               L  +K L  L     ++ GKLP+ 
Sbjct: 292 KDDWQALADAPV--GEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAF 349

Query: 304 EEDGLPTNLHFLKIERNM--EIWKSMIERGFHKFSSLRHLTIEGCDDDMVSFPPEDRRLG 361
              G    L  L +  N   EI              + +L+                +L 
Sbjct: 350 ---GSEIKLASLNLAYNQITEI----PANFCGFTEQVENLSFAHN------------KL- 389

Query: 362 TTLPLPASLASLT-----------IGDFPN--LERLSSSIVDLQNLKYLKLYDC 402
             +P      S++           IG       + L  +     N+  + L + 
Sbjct: 390 KYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNN 443

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 50.8 bits (122), Expect = 6e-07
 Identities = 54/427 (12%), Positives = 120/427 (28%), Gaps = 82/427 (19%)

Query: 31  LEYLILRYCKGLVKLPQSSLSLSSLREIEICRCHSLVSFPEVALPSKLKKIEIRECDALK 90
            E     Y +          +L  L ++E+  C +L   P            ++    ++
Sbjct: 227 WENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPT----------FLKALPEMQ 276

Query: 91  SLPEAWMCGTNSSLEILKIWSCHSLPYIARVQLPPSLKRLDISHCDNIRTLTVEDGIQSS 150
            +        N  +   ++        +A   +   ++ + I +  N++T  VE  +Q  
Sbjct: 277 LI----NVACNRGISGEQLKD--DWQALADAPVGEKIQIIYIGYN-NLKTFPVETSLQKM 329

Query: 151 SRRYTSYLLEKLEIWDCPSLTCIFSKNELPATLESLEVGNQPPSLKSLNVWSCSKLESIA 210
            +      L  LE      L              S         L SLN+    ++  I 
Sbjct: 330 KK------LGMLECLYN-QLE------GKLPAFGSE------IKLASLNLAYN-QITEIP 369

Query: 211 ERLDNN-TSLEMISILWCENLKFLPS--GLHNLRQLQEIQLWG-------CENLVSFPEG 260
                    +E +S      LK++P+     ++  +  I            +N       
Sbjct: 370 ANFCGFTEQVENLS-FAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPT 428

Query: 261 GLPCAKLSKLGIYRCERLEALPKG-LHNLKSLKKLRIGG----KLPSLEEDGLP------ 309
                 +S + +    ++   PK        L  + + G    ++P              
Sbjct: 429 PFKGINVSSINLSNN-QISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNT 487

Query: 310 TNLHFLKIERNM--EIWKSMIERGFHKFSSLRHLTIEGCDDDMVSFPPEDRRLGTTLPLP 367
             L  + +  N   ++              L  + +         FP +           
Sbjct: 488 YLLTSIDLRFNKLTKLSDDF---RATTLPYLVGIDLSYNS--FSKFPTQPLNSS------ 536

Query: 368 ASLASLTIGDFPNLER------LSSSIVDLQNLKYLKLYDCPKLKYFSEKGLPSSLLRLY 421
            +L    I +  + +           I    +L  L++     ++  +E  +  ++  L 
Sbjct: 537 -TLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSN-DIRKVNE-KITPNISVLD 593

Query: 422 IDECPLI 428
           I + P I
Sbjct: 594 IKDNPNI 600

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 53.4 bits (128), Expect = 9e-08
 Identities = 74/354 (20%), Positives = 121/354 (34%), Gaps = 45/354 (12%)

Query: 42  LVKLPQSSLSLSSLREIEICRCHSLVSFPEVALPSKLKKIEIRECDALKSLPEAWMCGTN 101
            V L +  L ++   E+++ R + L S P+  LP ++  +EI +  AL SLPE       
Sbjct: 49  AVSLLKECL-INQFSELQLNRLN-LSSLPD-NLPPQITVLEITQN-ALISLPELP----- 99

Query: 102 SSLEILKIWSCH--SLPYIARVQLPPSLKRLDISHCDNIRTLTVEDGIQSSSRRYTSYLL 159
           +SLE L        +LP     +LP SLK LD+ +   +  L                LL
Sbjct: 100 ASLEYLDACDNRLSTLP-----ELPASLKHLDVDNN-QLTMLPELPA-----------LL 142

Query: 160 EKLEIWDCPSLTCIFSKNELPATLESLEVGN--------QPPSLKSLNVWSCSKLESIAE 211
           E +   +   LT +    ELP +LE L V N         P SL++L+V +   LES+  
Sbjct: 143 EYINADNN-QLTML---PELPTSLEVLSVRNNQLTFLPELPESLEALDVSTN-LLESLPA 197

Query: 212 RLDNNTSL-EMISILWCEN--LKFLPSGLHNLRQLQEIQLWGCENLVSFPEGGLPCAKLS 268
               N    E      C    +  +P  + +L     I L     L S     L      
Sbjct: 198 VPVRNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDN-PLSSRIRESLSQQTAQ 256

Query: 269 KLGIYRCERLEALPKGLHNLKSLKKLRIGGKLPSLEEDGLPTNLHFLKIERNMEIWKSMI 328
                            + L       +    P  ++  +    H  + E +   + + +
Sbjct: 257 PDYHGPRIYFSMSDGQQNTLHRPLADAVTAWFPENKQSDVSQIWHAFEHEEHANTFSAFL 316

Query: 329 ERGFHKFSSLRHLTIEGCDDDMVSFPPEDRRLGTTLPLPASLASLTIGDFPNLE 382
           +R     S+             +        L       A+ A+ +  D   L 
Sbjct: 317 DRLSDTVSARNTSGFREQVAAWLEKLSASAELRQQSFAVAADATESCEDRVALT 370

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 50.1 bits (120), Expect = 8e-07
 Identities = 34/239 (14%), Positives = 78/239 (32%), Gaps = 58/239 (24%)

Query: 193 PSLKSLNVWSCSKLESIAER--LDNNTSLEMISILWCENLKFLPSG-LHNLRQLQEIQLW 249
            SL  LN+   +  +++ E     + T L+++ +   +    +       L  L+E+++ 
Sbjct: 124 SSLTFLNL-LGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEID 182

Query: 250 GCENLVSFPEGGL-PCAKLSKLGIYRCERLEALPKGL-HNLKSLKKLRIGG--------- 298
              +L S+    L     +S L ++   +   L +       S++ L +           
Sbjct: 183 AS-DLQSYEPKSLKSIQNVSHLILHMK-QHILLLEIFVDVTSSVECLELRDTDLDTFHFS 240

Query: 299 KLPSLEEDGLPTNLHFLKIERNMEIWKSMIERGFHKFSSLRHLTIEGCDDDMVSFPPEDR 358
           +L + E + L       +  +  +     + +  ++ S L  L                 
Sbjct: 241 ELSTGETNSL-IKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRN------------ 287

Query: 359 RLGTTLPLPASLASLTIGDFPNLERLSSSIVD-LQNLKYLKLY------DCPKLKYFSE 410
                                 L+ +   I D L +L+ + L+       CP++ Y S 
Sbjct: 288 ---------------------QLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSR 325

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 46.3 bits (110), Expect = 1e-05
 Identities = 28/126 (22%), Positives = 46/126 (36%), Gaps = 12/126 (9%)

Query: 229 NLKFLPSG-LHNLRQLQEIQLWGCENLVSFPEG---GLPCAKLSKLGIYRCERLEALPKG 284
            + ++ +  L     LQ + L     + +  E     L    L  L +     L  L   
Sbjct: 63  RITYISNSDLQRCVNLQALVLTSN-GINTIEEDSFSSLG--SLEHLDLSYN-YLSNLSSS 118

Query: 285 L-HNLKSLKKLRIGG-KLPSLEEDGLPTNLHFLKIERNMEIWK-SMIERG-FHKFSSLRH 340
               L SL  L + G    +L E  L ++L  L+I R   +   + I+R  F   + L  
Sbjct: 119 WFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEE 178

Query: 341 LTIEGC 346
           L I+  
Sbjct: 179 LEIDAS 184

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 48.8 bits (117), Expect = 2e-06
 Identities = 84/416 (20%), Positives = 138/416 (33%), Gaps = 95/416 (22%)

Query: 30  RLEYLILRYCKGLVKLPQSSLSLSSLREIEICRCH------------SLVSFPEVALPSK 77
                   + +     P  +     +    +  C              L S PE  LP  
Sbjct: 35  SKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLPE--LPPH 92

Query: 78  LKKIEIRECDALKSLPEAWMCGTNSSLEILKIWSCHSLPYIARVQLPPSLKRLDISHCDN 137
           L+ +    C++L  LPE     +  SL +    +  +L       LPP L+ L +S+   
Sbjct: 93  LESLVA-SCNSLTELPEL--PQSLKSLLVDNN-NLKALS-----DLPPLLEYLGVSNN-Q 142

Query: 138 IRTLTVEDGIQSSSRRYTSYLLEKLEIWDCPSLTCI-FSKNELPATLESLEVGNQPPSLK 196
           +  L                     E+ +   L  I    N L       ++ + PPSL+
Sbjct: 143 LEKLP--------------------ELQNSSFLKIIDVDNNSLK------KLPDLPPSLE 176

Query: 197 SLNVWSCSKLESIAERLDNNTSLEMISILWCEN--LKFLPSGLHNLRQLQEIQLWGCENL 254
            +     ++LE + E L N   L     ++ +N  LK LP    +L  +          L
Sbjct: 177 FIAA-GNNQLEELPE-LQNLPFLT---AIYADNNSLKKLPDLPLSLESI---VAGNN-IL 227

Query: 255 VSFPEGGLPCAKLSKLGIYRCERLEALPKGLHNLKSLKKLRIGGKLPSLEEDGLPTNLHF 314
              PE       L+ +       L+ LP    +L++L        L  L E  LP +L F
Sbjct: 228 EELPELQN-LPFLTTIYADNN-LLKTLPDLPPSLEALNVRDN--YLTDLPE--LPQSLTF 281

Query: 315 LKIERNMEIWKSMIERGFHKFSSLRHLTIEGCDDDMVSFPPEDRRLGTTLPLPASLASLT 374
           L +  N      +         +L +L                  + +   LP SL  L 
Sbjct: 282 LDVSEN------IFSGLSELPPNLYYLNASSN------------EIRSLCDLPPSLEELN 323

Query: 375 IGDFPN-LERLSSSIVDLQNLKYLKLYDCPKLKYFSEKGLPSSLLRLYIDECPLIE 429
           + +  N L  L +       L+ L       L    E  LP +L +L+++  PL E
Sbjct: 324 VSN--NKLIELPALP---PRLERLIASFN-HLAEVPE--LPQNLKQLHVEYNPLRE 371

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 43.8 bits (104), Expect = 7e-05
 Identities = 48/259 (18%), Positives = 73/259 (28%), Gaps = 61/259 (23%)

Query: 202 SCSKLESIAERLDNNTSLEMISILWCENLKFLPSGLHNLRQLQEIQLWGCE--------- 252
             S L  +    +N  S       W E  +  P G    R++   +L  C          
Sbjct: 19  HSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELEL 78

Query: 253 ---NLVSFPEGGLPCAKLSKLGIYRCERLEALPKGLHNLKSLKKLRIGG-KLPSLEEDGL 308
               L S PE       L  L       L  LP+   +LKSL         L       L
Sbjct: 79  NNLGLSSLPEL---PPHLESLVASCN-SLTELPELPQSLKSLLVDNNNLKALSD-----L 129

Query: 309 PTNLHFLKIERNMEIWKSMIER--GFHKFSSLRHLTIEGCDDDMVSFPPEDRRLGTTLPL 366
           P  L +L +  N       +E+       S L+ + ++               L     L
Sbjct: 130 PPLLEYLGVSNN------QLEKLPELQNSSFLKIIDVDNN------------SLKKLPDL 171

Query: 367 PASLASLT-----------IGDFPNLE-------RLSSSIVDLQNLKYLKLYDCPKLKYF 408
           P SL  +            + + P L         L        +L+ +   +   L+  
Sbjct: 172 PPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNN-ILEEL 230

Query: 409 SEKGLPSSLLRLYIDECPL 427
            E      L  +Y D   L
Sbjct: 231 PELQNLPFLTTIYADNNLL 249

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 43.8 bits (104), Expect = 9e-05
 Identities = 70/300 (23%), Positives = 109/300 (36%), Gaps = 58/300 (19%)

Query: 31  LEYLILRYCKGLVKLPQSSLSLSSLREIEICRCHSLVSFPEVALPSKLKKIEIRECDALK 90
           L+ + +     L KLP    SL  +        + L   PE+     L  I       LK
Sbjct: 155 LKIIDVDNNS-LKKLPDLPPSLEFIA----AGNNQLEELPELQNLPFLTAIYADNNS-LK 208

Query: 91  SLPEAWMCGTNSSLEILKIWSC--HSLPYIARVQLPPSLKRLDISHCDNIRTLTVEDGIQ 148
            LP+        SLE +   +     LP +      P L  +   +   ++TL   D   
Sbjct: 209 KLPDLP-----LSLESIVAGNNILEELPELQN---LPFLTTIYADNN-LLKTL--PDLPP 257

Query: 149 SSSRRYTSYLLEKLEIWDCPSLTCIFSKNELPATLESLEVGN--------QPPSLKSLNV 200
           S         LE L + D   LT +    ELP +L  L+V           PP+L  LN 
Sbjct: 258 S---------LEALNVRDN-YLTDL---PELPQSLTFLDVSENIFSGLSELPPNLYYLNA 304

Query: 201 WSCSKLESIAERLDNNTSLEMISILWCENLKFLPSGLHNLRQLQEIQLWGCENLVSFPEG 260
            S +++ S+ +      SLE +++     L  LP+    L +L         +L   PE 
Sbjct: 305 -SSNEIRSLCDLP---PSLEELNVSNN-KLIELPALPPRLERLI---ASFN-HLAEVPEL 355

Query: 261 GLPCAKLSKLGIYRCERLEALPKGLHNLKSLKKLRIGGKLPSLEEDGLPTNLHFLKIERN 320
                 L +L +     L   P    +++ L+      ++P      LP NL  L +E N
Sbjct: 356 ---PQNLKQLHVEYN-PLREFPDIPESVEDLRMNSHLAEVPE-----LPQNLKQLHVETN 406

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 48.7 bits (116), Expect = 3e-06
 Identities = 81/407 (19%), Positives = 125/407 (30%), Gaps = 73/407 (17%)

Query: 14  AEEEKDQQQQLCEL-SCR---LEYLILRYCKGLVKLPQSSLSLSSLREIEICRCHSLVSF 69
           AEE + +   + ++ +C       L +    GL  LP    +   +  + I    +L S 
Sbjct: 21  AEESRGRAAVVQKMRACLNNGNAVLNVG-ESGLTTLPDCLPA--HITTLVIPDN-NLTSL 76

Query: 70  PEVALPSKLKKIEIRECDALKSLPEAWMCGTNSSLEILKIWSCHSLPYIARVQLPPSLKR 129
           P   LP +L+ +E+     L SLP          L I        LP      LP  L +
Sbjct: 77  PA--LPPELRTLEVSGNQ-LTSLPVL--PPGLLELSIFSN-PLTHLP-----ALPSGLCK 125

Query: 130 LDISHC---------DNIRTLTVEDGIQSSSRRYTSYLLEKLEIWDCPSLTCIFSKNELP 180
           L I              ++ L+V D  Q +S       L KL  ++   LT       LP
Sbjct: 126 LWIFGNQLTSLPVLPPGLQELSVSD-NQLASLPALPSELCKLWAYNN-QLT------SLP 177

Query: 181 ATLESLEV----GNQ-------PPSLKSLNVWSCSKLESIAERLDNNTSLEMISILWCEN 229
                L+      NQ       P  L  L  ++  +L S+         L    I+    
Sbjct: 178 MLPSGLQELSVSDNQLASLPTLPSELYKLWAYNN-RLTSLPALPSGLKEL----IVSGNR 232

Query: 230 LKFLPSGLHNLRQLQEIQLWGCENLVSFPEGGLPCAKLSKLGIYRCERLEALPKGLHNLK 289
           L  LP     L++L    + G   L S P      + L  L +YR  +L  LP+ L +L 
Sbjct: 233 LTSLPVLPSELKELM---VSGN-RLTSLPML---PSGLLSLSVYRN-QLTRLPESLIHLS 284

Query: 290 SLKKLRIGG-KLPSLEEDGLPTNLHFLKIERNMEIWKSMIERGFHKFSSLRHLTIEGCDD 348
           S   + + G  L           +          I   M      + +   HL       
Sbjct: 285 SETTVNLEGNPLSERTLQ-ALREITSAPGYSGPIIRFDMAGASAPRETRALHLAAAD--- 340

Query: 349 DMVSFPPEDRRLGTTLPLPASLASLTIGDFPNLERLSSSIVDLQNLK 395
                 P                        N +  S  +  L   +
Sbjct: 341 ---WLVPAREGEPAPADRWHMFGQE-----DNADAFSLFLDRLSETE 379

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 47.4 bits (113), Expect = 6e-06
 Identities = 62/416 (14%), Positives = 132/416 (31%), Gaps = 41/416 (9%)

Query: 30  RLEYLILRYCKGLVKLPQSSL-SLSSLREIEICRCHSLVSFPEVALP--SKLKKIEIREC 86
            L+ LIL+  + +  +   +  SL SL  +++   H L S         S LK + +   
Sbjct: 51  NLQVLILKSSR-INTIEGDAFYSLGSLEHLDLSDNH-LSSLSSSWFGPLSSLKYLNLMGN 108

Query: 87  DALKSLPEAWMCGTNSSLEILKIWSCHSLPYIARVQLP--PSLKRLDISHCDNIRTLTVE 144
              ++L    +    ++L+ L+I +  +   I R+      SL  L+I    ++R    +
Sbjct: 109 P-YQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKAL-SLRNYQSQ 166

Query: 145 --DGIQSSSRRYTSY----LLEKLEIWDCPSLTCIFSKNELPATLESLEVGNQPPSLKSL 198
               I+              L ++      S+  +  ++                    +
Sbjct: 167 SLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRD-TNLARFQFSPLPVDEVSSPM 225

Query: 199 NVWSCSKLESIAERLDNNTSLEMISILWCENLKFLPSGLHNLRQLQEIQLWGCENLVSFP 258
              +        E  +    L    IL    ++F    L+ L      +      L    
Sbjct: 226 KKLAFRGSVLTDESFNELLKLLR-YILELSEVEFDDCTLNGLGDFNPSESDVVSELGK-- 282

Query: 259 EGGLPCAKLSKLGIYRCERLEALPKGLHNLKSLKKLRIGG----KLPSLEEDGLPTNLHF 314
              +    + +L I +      L      L+ +K++ +       +P      L  +L F
Sbjct: 283 ---VETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLK-SLEF 338

Query: 315 LKIERNMEIWKSMIERG-FHKFSSLRHLTIEGCDDDMVSFPPEDRRLGTTLPLPASLASL 373
           L +  N+ + + +        + SL+ L +       +            L L     +L
Sbjct: 339 LDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTG-----EILLTLK----NL 389

Query: 374 TIGDFPN--LERLSSSIVDLQNLKYLKLYDCPKLKYFSEKGLPSSLLRLYIDECPL 427
           T  D        +  S    + +++L L     ++      +P +L  L +    L
Sbjct: 390 TSLDISRNTFHPMPDSCQWPEKMRFLNLSST-GIRVVKT-CIPQTLEVLDVSNNNL 443

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 46.3 bits (110), Expect = 2e-05
 Identities = 52/287 (18%), Positives = 92/287 (32%), Gaps = 59/287 (20%)

Query: 123 LPPSLKRLDISHCDNIRTLTVEDGIQSSSRRYTSYLLEKLEIWDCPSLTCIFSKNELPAT 182
           L  ++K LD+S    I  +                                         
Sbjct: 24  LTAAMKSLDLSFN-KITYIG-------------------------------------HGD 45

Query: 183 LESLEVGNQPPSLKSLNVWSCSKLESIAER-LDNNTSLEMISILWCENLKFLPSG-LHNL 240
           L +        +L+ L + S  ++ +I      +  SLE + +    +L  L S     L
Sbjct: 46  LRAC------ANLQVLILKSS-RINTIEGDAFYSLGSLEHLDLSDN-HLSSLSSSWFGPL 97

Query: 241 RQLQEIQLWGCENLVSFPEGGL--PCAKLSKLGIYRCERLEALPKG-LHNLKSLKKLRIG 297
             L+ + L G     +     L      L  L I   E    + +     L SL +L I 
Sbjct: 98  SSLKYLNLMGN-PYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIK 156

Query: 298 G-KLPSLEEDGLP--TNLHFLKIERNMEIWKSMIERGFHKFSSLRHLTIEGCDDDMVSFP 354
              L + +   L    ++H L +  + E    ++E      SS+R+L +   +     F 
Sbjct: 157 ALSLRNYQSQSLKSIRDIHHLTLHLS-ES-AFLLEIFADILSSVRYLELRDTNLARFQFS 214

Query: 355 PE--DRRLGTTLPLPASLASLTIGDFPNLERLSSSIVDLQNLKYLKL 399
           P   D        L    + LT   F  L +L   I++L  +++   
Sbjct: 215 PLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDC 261

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 41.2 bits (97), Expect = 6e-04
 Identities = 54/393 (13%), Positives = 109/393 (27%), Gaps = 62/393 (15%)

Query: 40  KGLVKLPQSSLSLSSLREIEICRCHSLVSFPEVALPS-KLKKIEIRECDALKSLPEAWMC 98
           K +  +   +L LS    +       L S   + L    L + +       +        
Sbjct: 169 KSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMK-- 226

Query: 99  GTNSSLEILKIWSCHSLPYIARVQLPPSLKRLDISHCDNIRTLTVEDGIQSSSRRYTSYL 158
               +     +        +  ++    L  ++   C                       
Sbjct: 227 --KLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVE 284

Query: 159 LEKLEIWDCPSLTCIFSKNELPATLESLEVGNQPPSLKSLNVWSCSKLESIAER-LDNNT 217
              +       +   +   +L      L        +K + V   SK+  +      +  
Sbjct: 285 TVTIRRLH---IPQFYLFYDLSTVYSLL------EKVKRITV-ENSKVFLVPCSFSQHLK 334

Query: 218 SLE-------MISILWCENLKFLPSGLHNLRQLQEIQLWGCENLVSFPEGGLPCAKLSKL 270
           SLE       ++   + +N             LQ + L    +L S  + G     L  L
Sbjct: 335 SLEFLDLSENLMVEEYLKNSACK----GAWPSLQTLVLSQN-HLRSMQKTGEILLTLKNL 389

Query: 271 ---GIYRCERLEALPKGLHNLKSLKKLRIGG-KLPSLEEDGLPTNLHFLKIERNMEIWKS 326
               I R      +P      + ++ L +    +  ++   +P  L  L +  N      
Sbjct: 390 TSLDISRN-TFHPMPDSCQWPEKMRFLNLSSTGIRVVK-TCIPQTLEVLDVSNNN----- 442

Query: 327 MIERGFHKFSSLRHLTIEGCDDDMVSFPPEDRRLGTTLPLPASLASLTIGDFPN--LERL 384
            ++        L+ L I               +L  TLP  +    L +       L+ +
Sbjct: 443 -LDSFSLFLPRLQELYISRN------------KL-KTLPDASLFPVLLVMKISRNQLKSV 488

Query: 385 SSSIVD-LQNLKYLKLY------DCPKLKYFSE 410
              I D L +L+ + L+       CP++ Y S 
Sbjct: 489 PDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSR 521

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 47.0 bits (112), Expect = 7e-06
 Identities = 48/250 (19%), Positives = 93/250 (37%), Gaps = 34/250 (13%)

Query: 192 PPSLKSLNVWSCSKLESIAER-LDNNTSLEMISILWCENLKFLPSG-LHNLRQLQEIQLW 249
           P   + L+    ++++++ +    +   LE + +     +  +  G  +NL  L+ + L 
Sbjct: 31  PTETRLLD-LGKNRIKTLNQDEFASFPHLEELELNEN-IVSAVEPGAFNNLFNLRTLGLR 88

Query: 250 GCENLVSFPEG---GLPCAKLSKLGIYRCERLEALPKGL-HNLKSLKKLRIGG-KLPSLE 304
               L   P G   GL    L+KL I    ++  L   +  +L +LK L +G   L  + 
Sbjct: 89  SN-RLKLIPLGVFTGLS--NLTKLDISEN-KIVILLDYMFQDLYNLKSLEVGDNDLVYIS 144

Query: 305 ED---GLPTNLHFLKIERNMEIWKSMIERG-FHKFSSLRHLTIEGCDDDMVSFPPEDRRL 360
                GL  +L  L +E+   +  + I          L  L +   +  + +        
Sbjct: 145 HRAFSGLN-SLEQLTLEKC-NL--TSIPTEALSHLHGLIVLRLRHLN--INAIRD----- 193

Query: 361 GTTLPLPASLASLTIGDFPNLERLSSSIVDLQNLKYLKLYDCPKLKYFSE---KGLPSSL 417
            +   L   L  L I  +P L+ ++ + +   NL  L +  C  L        + L   L
Sbjct: 194 YSFKRLY-RLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHC-NLTAVPYLAVRHLV-YL 250

Query: 418 LRLYIDECPL 427
             L +   P+
Sbjct: 251 RFLNLSYNPI 260

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 45.5 bits (108), Expect = 2e-05
 Identities = 62/341 (18%), Positives = 121/341 (35%), Gaps = 72/341 (21%)

Query: 123 LPPSLKRLDISHCDNIRTLTVEDGIQSSSRRYTSYLLEKLEIWDCPSLTCIFSKNEL--- 179
           +P   + LD+     I+TL      Q     +    LE+LE+          ++N +   
Sbjct: 30  IPTETRLLDLGKN-RIKTLN-----QDEFASFPH--LEELEL----------NENIVSAV 71

Query: 180 -PATLESLEVGNQPPSLKSLNVWSCSKLESIAER-LDNNTSLEMISILWCENLKFLPSGL 237
            P    +L       +L++L + S  +L+ I        ++L  + I     +  L   +
Sbjct: 72  EPGAFNNL------FNLRTLGLRSN-RLKLIPLGVFTGLSNLTKLDISEN-KIVILLDYM 123

Query: 238 -HNLRQLQEIQLWGCENLVSFPEG---GLPCAKLSKLGIYRCERLEALPKG-LHNLKSLK 292
             +L  L+ +++    +LV        GL    L +L + +C  L ++P   L +L  L 
Sbjct: 124 FQDLYNLKSLEVGDN-DLVYISHRAFSGLN--SLEQLTLEKC-NLTSIPTEALSHLHGLI 179

Query: 293 KLRIGG-KLPSLEEDGLP--TNLHFLKIERNMEIWKSMIERGFHKFSSLRHLTIEGCDDD 349
            LR+    + ++ +        L  L+I     +    +        +L  L+I  C  +
Sbjct: 180 VLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYL--DTMTPNCLYGLNLTSLSITHC--N 235

Query: 350 MVSFPPED----RRLGTTLPLPA-SLASLTIGDFPNLERLS---------SSI-----VD 390
           + + P         L   L L    ++++       L RL          + +       
Sbjct: 236 LTAVPYLAVRHLVYL-RFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRG 294

Query: 391 LQNLKYLKLYDCPKLKYFSE---KGLPSSLLRLYIDECPLI 428
           L  L+ L +    +L    E     +  +L  L +D  PL 
Sbjct: 295 LNYLRVLNVSGN-QLTTLEESVFHSVG-NLETLILDSNPLA 333

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 46.5 bits (111), Expect = 1e-05
 Identities = 69/434 (15%), Positives = 135/434 (31%), Gaps = 90/434 (20%)

Query: 30  RLEYLILRYCKGLVKLPQSSLS-LSSLREIEICRCHSLVSFPEVALP--SKLKKIEIREC 86
           RL+ L+L     L+ + +++LS   +L+ +   +   + S   + L     L+ + +   
Sbjct: 82  RLDTLVLTANP-LIFMAETALSGPKALKHLFFIQTG-ISSIDFIPLHNQKTLESLYLGSN 139

Query: 87  DALKSLPEAWMCGTNSSLEILKIWSCHSLPYIARVQLP--PSLKRLDISHCDNIRTLTVE 144
             + S+           L++L   +   + Y+++  +        L ++   N       
Sbjct: 140 -HISSIKLP-KGFPTEKLKVLDFQNNA-IHYLSKEDMSSLQQATNLSLNLNGNDIAGIEP 196

Query: 145 DGIQSSSRRYTSYLLEKLEIWDCPSL---------TCIFSKNELPATLESLEVGNQPPSL 195
               S+  +  ++   +  +     L            F   +      ++  G    S+
Sbjct: 197 GAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSV 256

Query: 196 KSLNVWSCSKLESIAER-LDNNTSLEMISILWCENLKFLPSGLHNLRQLQEIQLWGCENL 254
           +S+N+       +I+       + L+ + +    +L  LPSGL  L  L+++ L      
Sbjct: 257 ESINL-QKHYFFNISSNTFHCFSGLQELDLTAT-HLSELPSGLVGLSTLKKLVLSAN--- 311

Query: 255 VSFPEGGLPCAKLSKLGIYRCERLEALPKG-LHNLKSLKKL-----RIGGKLPSLEEDGL 308
                                 + E L +    N  SL  L         +L +   + L
Sbjct: 312 ----------------------KFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENL 349

Query: 309 PTNLHFLKIERNMEIWKSMIERGFHKFSSLRHLTIEGCDDDMVSFPPEDRRLGTTLPLPA 368
             NL  L +  +               S L+ L +     + +S   E            
Sbjct: 350 E-NLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYN--EPLSLKTE------------ 394

Query: 369 SLASLTIGDFPNLERLS------------SSIVDLQNLKYLKLYDCPKLKYFSE---KGL 413
                   + P LE L             S   +L  LK L L     L   SE    GL
Sbjct: 395 -----AFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHS-LLDISSEQLFDGL 448

Query: 414 PSSLLRLYIDECPL 427
           P +L  L +     
Sbjct: 449 P-ALQHLNLQGNHF 461

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 40.8 bits (96), Expect = 9e-04
 Identities = 61/357 (17%), Positives = 109/357 (30%), Gaps = 100/357 (28%)

Query: 123 LPPSLKRLDISHCDNIRTLTVEDGIQSSSRRYTSYLLEKLEIWDCPSLTCIFSKNELPAT 182
           LP S + L+ S    + T+       ++  R  +  L  L++  C  +  I    +   +
Sbjct: 31  LPNSTECLEFSFN-VLPTI-----QNTTFSRLIN--LTFLDLTRC-QIYWI--HEDTFQS 79

Query: 183 LESLEV----GNQ-----------PPSLKSLNVWSCSKLESIAER------------LDN 215
              L+      N            P +LK L       + SI               L +
Sbjct: 80  QHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQT-GISSIDFIPLHNQKTLESLYLGS 138

Query: 216 N--TSLEMISILWCENLKFL-----------PSGLHNLRQLQEIQLWGCEN-LVSFPEGG 261
           N  +S+++      E LK L              + +L+Q   + L    N +     G 
Sbjct: 139 NHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGA 198

Query: 262 LPCAKLSKLGIYRCERLEALPKGLHNLK-------SLKKLRIGGKLPSLEEDGLPTNLHF 314
              A    L     + L  + KGL N         + + +      P++ E     ++  
Sbjct: 199 FDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVES 258

Query: 315 LKIERNMEIWKSMIERGFHKFSSLRHLTIEGCDDDMVSFPPEDRRLGTTLPLPASLASLT 374
           + ++++   + ++    FH FS L+ L +                               
Sbjct: 259 INLQKHY--FFNISSNTFHCFSGLQELDLTAT---------------------------- 288

Query: 375 IGDFPNLERLSSSIVDLQNLKYLKLYDCPKLKYFSE---KGLPSSLLRLYIDECPLI 428
                +L  L S +V L  LK L L    K +   +      P SL  L I      
Sbjct: 289 -----HLSELPSGLVGLSTLKKLVLSAN-KFENLCQISASNFP-SLTHLSIKGNTKR 338

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 46.2 bits (110), Expect = 2e-05
 Identities = 54/383 (14%), Positives = 122/383 (31%), Gaps = 64/383 (16%)

Query: 22  QQLCELSCRLEYLILRYCKGLVKLPQSSLSLSSLREIEICRCHSLVSFPEVALPS----- 76
           + L ++      L L     +  +   +     L ++ +      ++  +  +       
Sbjct: 170 RVLHQMPLLNLSLDLSLNP-MNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLE 228

Query: 77  --KLKKIEIRECDALKSLPEAWMCG-TNSSLEILKI--WSCHSLPYIARVQLPPSLKRLD 131
             +L   E R    L+   ++ + G  N ++E  ++     +    I       ++    
Sbjct: 229 VHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFS 288

Query: 132 ISHCDNIRTLTVEDGIQSSSRRYTSYL-LEKLEIWDCPSLTCI-FSKNELPATLESLEVG 189
           +     I  +                    +       SL  + F+ N+      +    
Sbjct: 289 LVSV-TIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKG----GNAFSE 343

Query: 190 NQPPSLKSLNVWSCSKLESI---AERLDNNTSLEMISILWCENLKFLPSGLHNLRQLQEI 246
              PSL+ L++ S + L      ++     TSL+ + + +   +  + S    L QL+ +
Sbjct: 344 VDLPSLEFLDL-SRNGLSFKGCCSQSDFGTTSLKYLDLSFN-GVITMSSNFLGLEQLEHL 401

Query: 247 QLWGCENLVSFPEGGL--PCAKLSKLGIYRCERLEALPKG-LHNLKSLKKLRIGG----- 298
                 NL    E  +      L  L I           G  + L SL+ L++ G     
Sbjct: 402 DFQHS-NLKQMSEFSVFLSLRNLIYLDISHT-HTRVAFNGIFNGLSSLEVLKMAGNSFQE 459

Query: 299 --------KLPSLEE----------------DGLPTNLHFLKIERNMEIWKSMIERGFHK 334
                   +L +L                  + L ++L  L +  N ++ KS+ +  F +
Sbjct: 460 NFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSL-SSLQVLNMASN-QL-KSVPDGIFDR 516

Query: 335 FSSLRHLTIEG----CDDDMVSF 353
            +SL+ + +      C    + +
Sbjct: 517 LTSLQKIWLHTNPWDCSCPRIDY 539

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 41.2 bits (97), Expect = 6e-04
 Identities = 69/438 (15%), Positives = 142/438 (32%), Gaps = 65/438 (14%)

Query: 26  ELSCRLEYLILRYCKGLVKLPQSSLS-LSSLREIEICRCHSLVSFPEVALP--SKLKKIE 82
            L    + L L +   L  L   S      L+ +++ RC  + +  + A    S L  + 
Sbjct: 25  NLPFSTKNLDLSFNP-LRHLGSYSFFSFPELQVLDLSRCE-IQTIEDGAYQSLSHLSTLI 82

Query: 83  IRECDALKSLPEAWMCGTNSSLEILKIWSCH--SLPYIARVQLPPSLKRLDISHCDNIRT 140
           +     ++SL      G  SSL+ L     +  SL       L  +LK L+++H   I++
Sbjct: 83  LTGN-PIQSLALGAFSG-LSSLQKLVAVETNLASLENFPIGHLK-TLKELNVAHN-LIQS 138

Query: 141 LTVEDGIQSSSRRYTSYLLEKLEIWDCPSLTCIFSKNELPATLESLEVGNQPPSLKSLNV 200
             + +   + +       LE L++     +  I         L  L     P    SL++
Sbjct: 139 FKLPEYFSNLTN------LEHLDLSSNK-IQSI-----YCTDLRVL--HQMPLLNLSLDL 184

Query: 201 WSCSKLESIAERLDNNTSLEMISILWCENLKFLPSG-LHNLRQLQEIQLW-----GCENL 254
            S + +  I         L  +++    +   +    +  L  L+  +L         NL
Sbjct: 185 -SLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNL 243

Query: 255 VSFPEG---GLPCAKLSKLGIYRCE-RLEALPKGLHNLKSLKKLRIGG-KLPSLEEDGLP 309
             F +    GL    + +  +   +  L+ +    + L ++    +    +  +++    
Sbjct: 244 EKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYN 303

Query: 310 TNLHFLKIERNMEIWKSMIE-----------------RGFHKFSSLRHLTIEGCDDDMVS 352
                L++          ++                        SL  L +         
Sbjct: 304 FGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKG 363

Query: 353 FPPEDRRLGTTLPLPASLASLTIGDFPNLERLSSSIVDLQNLKYLKLYDCPKLKYFSEKG 412
              +      +     SL  L +  F  +  +SS+ + L+ L++L       LK  SE  
Sbjct: 364 CCSQ------SDFGTTSLKYLDL-SFNGVITMSSNFLGLEQLEHLDFQHS-NLKQMSEFS 415

Query: 413 L---PSSLLRLYIDECPL 427
           +     +L+ L I     
Sbjct: 416 VFLSLRNLIYLDISHTHT 433

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 46.2 bits (110), Expect = 2e-05
 Identities = 48/320 (15%), Positives = 98/320 (30%), Gaps = 44/320 (13%)

Query: 123 LPPSLKRLDISHCDNIRTLTVEDGIQSSSRRYTSYLLEKLEIWDCPSLTCIFSKNELPAT 182
           LP S K LD+S    +R L        S   +    L+ L++  C  +  I         
Sbjct: 26  LPFSTKNLDLSFN-PLRHL-----GSYSFFSFPE--LQVLDLSRC-EIQTIE-----DGA 71

Query: 183 LESLEVGNQPPSLKSLNVWSCSKLESIAERLDNNTSLEMISILWCENLKFLPSGLHNLRQ 242
            +SL        L +L +                +SL+ +  +           + +L+ 
Sbjct: 72  YQSL------SHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKT 125

Query: 243 LQEIQLWGCENLVSFPEGGL--PCAKLSKLGIYRCERLEALPKG-LHNLKSLKKLRI--- 296
           L+E+ +     + SF           L  L +    +++++    L  L  +  L +   
Sbjct: 126 LKELNVAHN-LIQSFKLPEYFSNLTNLEHLDLSSN-KIQSIYCTDLRVLHQMPLLNLSLD 183

Query: 297 --GGKLPSLEEDGL-PTNLHFLKIERNMEIWKSMIERGFHKFSSLRHLTIEGCDDDMVSF 353
                +  ++        LH L +  N +   ++++      + L    +      +  F
Sbjct: 184 LSLNPMNFIQPGAFKEIRLHKLTLRNNFDSL-NVMKTCIQGLAGLEVHRL-----VLGEF 237

Query: 354 PPEDRRLGTTLPLPASLASLTIGDFP------NLERLSSSIVDLQNLKYLKLYDCPKLKY 407
             E             L +LTI +F        L+ +      L N+    L     ++ 
Sbjct: 238 RNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSV-TIER 296

Query: 408 FSEKGLPSSLLRLYIDECPL 427
             +         L +  C  
Sbjct: 297 VKDFSYNFGWQHLELVNCKF 316

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 45.8 bits (109), Expect = 2e-05
 Identities = 75/427 (17%), Positives = 139/427 (32%), Gaps = 67/427 (15%)

Query: 31  LEYLILRYCKGLVKLPQSSLS-LSSLREIEICRCHSLVSFPEVALP--SKLKKIEIRECD 87
            + + L +   L  L   S S  S L+ +++ RC  + +  + A      L  + +    
Sbjct: 34  TKNIDLSFNP-LKILKSYSFSNFSELQWLDLSRCE-IETIEDKAWHGLHHLSNLILTGNP 91

Query: 88  ALKSLPEAWMCGTNSSLEILKIWSCH--SLPYIARVQLPPSLKRLDISHCDNIRTLTVED 145
            ++S       G  +SLE L        SL      QL  +LK+L+++H   I +  +  
Sbjct: 92  -IQSFSPGSFSG-LTSLENLVAVETKLASLESFPIGQLI-TLKKLNVAHN-FIHSCKLPA 147

Query: 146 GIQSSSRRYTSYLLEKLEIWDCPSLTCIFSKNEL----PATLESLEVGNQPPSLKSLNVW 201
              + +       L  +            S N +       L+ L     P    SL++ 
Sbjct: 148 YFSNLTN------LVHV----------DLSYNYIQTITVNDLQFLR--ENPQVNLSLDM- 188

Query: 202 SCSKLESIAERLDNNTSLEMISILWCENLKFLPSG-LHNLRQLQEIQLW-----GCENLV 255
           S + ++ I ++      L  +++    N   +    L NL  L   +L         NL 
Sbjct: 189 SLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLE 248

Query: 256 SFPEG---GLPCAKLSKLGIYRCERLEALPKGLHNLKSLKKLRIGG-KLPSLEEDGLPTN 311
            F      GL    + +  +             H L ++  + + G  +  LE+      
Sbjct: 249 IFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFK 308

Query: 312 LHFLKIERNMEIWKSMIERGFHKFSSLRHLTIEGC---DDDMVSFPPEDRRLG------T 362
              L I R       + +        L+ LT+              P    L       +
Sbjct: 309 WQSLSIIRC-----QLKQFPTLDLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALS 363

Query: 363 TLPLPA-------SLASLTIGDFPNLERLSSSIVDLQNLKYLKLYDCPKLKYFSEKGLPS 415
                +       SL  L +  F     +S++ + L+ L++L       LK  +E     
Sbjct: 364 FSGCCSYSDLGTNSLRHLDL-SFNGAIIMSANFMGLEELQHLDFQHS-TLKRVTEFSAFL 421

Query: 416 SLLRLYI 422
           SL +L  
Sbjct: 422 SLEKLLY 428

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 44.5 bits (105), Expect = 4e-05
 Identities = 35/225 (15%), Positives = 73/225 (32%), Gaps = 36/225 (16%)

Query: 25  CELSCRLEYLILRYCKGLVKLPQSSLSLSSLREIEICRCHSLVSFPEVALPSKLKKIEIR 84
             +     + IL  C  L  L    L LS      + +             S L ++ + 
Sbjct: 103 SVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKN------------SNLVRLNLS 150

Query: 85  ECDALKSLPEAWMCGTNSSLEILKIWSCHSL----PYIARVQLPPSLKRLDISHCDNIRT 140
            C          +  + S L+ L +  C         +A   +  ++ +L++S     + 
Sbjct: 151 GCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGY--RKN 208

Query: 141 LTVEDGIQSSSRRYTSYLLEKLEIWDCPSLTCIFSKNELPATLESLEVGNQPPSLKSLNV 200
           L  +  + +  RR  +  L  L++ D   L             +  +   Q   L+ L++
Sbjct: 209 LQ-KSDLSTLVRRCPN--LVHLDLSDSVMLKN-----------DCFQEFFQLNYLQHLSL 254

Query: 201 WSCSKLESIA-ERLDNNTSLEMISILWC---ENLKFLPSGLHNLR 241
             C  +       L    +L+ + +        L+ L   L +L+
Sbjct: 255 SRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEALPHLQ 299

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 44.3 bits (105), Expect = 6e-05
 Identities = 51/296 (17%), Positives = 85/296 (28%), Gaps = 58/296 (19%)

Query: 126 SLKRLDISHCDNIRTLTVEDGIQSSSRRYTSYLLEKLEIWDCPSLTCI-FSKNELPATLE 184
           ++  LD+S   N+  L  +              L  L++     LT +    N+L     
Sbjct: 75  NITTLDLSQNTNLTYLACDSN-----------KLTNLDVTPLTKLTYLNCDTNKL----T 119

Query: 185 SLEVGNQPPSLKSLNVWSCSKLESIAERLDNNTSLEMISILWCENLKFLPSGLHNLRQLQ 244
            L+V    P L  LN  + + L  I   + +NT L  +     + +  L   +    QL 
Sbjct: 120 KLDVSQ-NPLLTYLNC-ARNTLTEID--VSHNTQLTELDCHLNKKITKLD--VTPQTQLT 173

Query: 245 EIQLWGCENLVSFPEGGLPCAKLSKLGIYRCERLEALPKGLHNLKSLKKLRIGG-KLPSL 303
            +       +            L++L       +  L   L+    L  L     KL  +
Sbjct: 174 TLDCSFN-KITELDVSQNK--LLNRLNCDTN-NITKLD--LNQNIQLTFLDCSSNKLTEI 227

Query: 304 EEDGLPTNLHFLKIERNMEIWKSMIERGFHKFSSLRHLTIEGCDDDMVSFPPEDRRLGTT 363
           +   L T L +     N      + E      S L  L     D                
Sbjct: 228 DVTPL-TQLTYFDCSVN-----PLTELDVSTLSKLTTLHCIQTD-------------LLE 268

Query: 364 LPLPASLA----------SLTIGDFPNLERLSSSIVDLQNLKYLKLYDCPKLKYFS 409
           + L  +             +   D  +  +L         +  L L   PKL Y  
Sbjct: 269 IDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLY 324

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 43.8 bits (104), Expect = 6e-05
 Identities = 31/159 (19%), Positives = 54/159 (33%), Gaps = 16/159 (10%)

Query: 193 PSLKSLNVWSCSKLESIAERLDNNTSLEMISILWCEN--LKFLPSGLHNLRQLQEIQLWG 250
             L  L++ S + L        ++     +  L      +  + S    L QL+ +    
Sbjct: 52  TQLTKLSL-SSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQH 110

Query: 251 CENLVSFPEGGL--PCAKLSKLGIYRCERLEALPKG-LHNLKSLKKLRIGG--KLPSLEE 305
             NL    E  +      L  L I           G  + L SL+ L++ G     +   
Sbjct: 111 S-NLKQMSEFSVFLSLRNLIYLDISHT-HTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP 168

Query: 306 DGLP--TNLHFLKIERNMEIWKSMIERG-FHKFSSLRHL 341
           D      NL FL + +  ++    +    F+  SSL+ L
Sbjct: 169 DIFTELRNLTFLDLSQC-QL--EQLSPTAFNSLSSLQVL 204

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 43.3 bits (102), Expect = 1e-04
 Identities = 27/125 (21%), Positives = 46/125 (36%), Gaps = 16/125 (12%)

Query: 229 NLKFLPSG-LHNLRQLQEIQLWGCENLVSFPEG---GLPCAKLSKLGIYRCERLEALPKG 284
            L+ +  G       L++I++   + L          LP  KL ++ I +   L  +   
Sbjct: 41  KLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLP--KLHEIRIEKANNLLYINPE 98

Query: 285 -LHNLKSLKKLRIGG----KLPSLEEDGLPTNLHFLKIERNMEIWKSMIERGFHKFSSLR 339
              NL +L+ L I       LP + +         L I+ N+ I    IER    F  L 
Sbjct: 99  AFQNLPNLQYLLISNTGIKHLPDVHKIHSL-QKVLLDIQDNINI--HTIERN--SFVGLS 153

Query: 340 HLTIE 344
             ++ 
Sbjct: 154 FESVI 158

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 42.6 bits (101), Expect = 2e-04
 Identities = 68/410 (16%), Positives = 142/410 (34%), Gaps = 86/410 (20%)

Query: 31  LEYLILRYCKGLVKLPQSSLSLSSLREIEICRCHSLVSFPEVALPSKLKKIEIRECDALK 90
               +L        + Q+ L    +  ++  R   + S   V   + L +I       L 
Sbjct: 26  KMKTVLGKTNVTDTVSQTDLD--QVTTLQADRL-GIKSIDGVEYLNNLTQINFSNNQ-LT 81

Query: 91  SLPEAWMCGTNSSLEILKIWSCH--SLPYIARVQLPPSLKRLDISHCDNIRTLTVEDGIQ 148
            +         + L  + + +     +  +A +    +L  L + +   I  +     + 
Sbjct: 82  DITP---LKNLTKLVDILMNNNQIADITPLANL---TNLTGLTLFNN-QITDIDPLKNLT 134

Query: 149 SSSRRYTSYLLEKLEIWDCPSLTCIFSKNELPATLESLEVGNQPPSLKSLNVWSCSKLES 208
           +         L +LE+    +++ I + + L + L+ L  GNQ   LK L   + + LE 
Sbjct: 135 N---------LNRLELSSN-TISDISALSGLTS-LQQLSFGNQVTDLKPLA--NLTTLER 181

Query: 209 IAERLDNN--TSLEMISILWCENLKFL---------PSGLHNLRQLQEIQLWGCENLVSF 257
           +   + +N  + + +++ L   NL+ L          + L  L  L E+ L G  N +  
Sbjct: 182 L--DISSNKVSDISVLAKL--TNLESLIATNNQISDITPLGILTNLDELSLNG--NQLKD 235

Query: 258 PEGGLPCAKLSKLGIYRCERLEALPKGLHNLKSLKKLRIGG-KLPSLEEDGLPTNLHFLK 316
                    L+ L +    ++  L   L  L  L +L++G  ++ ++      T L  L+
Sbjct: 236 IGTLASLTNLTDLDLANN-QISNLA-PLSGLTKLTELKLGANQISNISPLAGLTALTNLE 293

Query: 317 IERNMEIWKSMIERGFHKFSSLRHLTIEGCDDDMVSFPPEDRRLGTTLPLPASLASLT-- 374
           +  N ++    I        +L +LT+                +    P+ +SL  L   
Sbjct: 294 LNEN-QL--EDIS-PISNLKNLTYLTLYFN------------NISDISPV-SSLTKLQRL 336

Query: 375 ------------IGDFPNLERLS---------SSIVDLQNLKYLKLYDCP 403
                       + +  N+  LS         + + +L  +  L L D  
Sbjct: 337 FFYNNKVSDVSSLANLTNINWLSAGHNQISDLTPLANLTRITQLGLNDQA 386

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 42.7 bits (101), Expect = 2e-04
 Identities = 51/320 (15%), Positives = 107/320 (33%), Gaps = 45/320 (14%)

Query: 30  RLEYLILRYCKGLVKLPQSSLS-LSSLREIEICRCHSLVSFPEVALP--SKLKKIEIREC 86
             + +  +    + KLP + L     +  + +     +      A      ++K+ +   
Sbjct: 46  NQKIVTFKNST-MRKLPAALLDSFRQVELLNLNDLQ-IEEIDTYAFAYAHTIQKLYMGFN 103

Query: 87  DALKSLPEAWMCGTNSSLEILKIWSCH--SLPYIARVQLPPSLKRLDISHCDNIRTLTVE 144
            A++ LP          L +L +      SLP       P  L  L +S+  N+  +  E
Sbjct: 104 -AIRYLPPHVFQNV-PLLTVLVLERNDLSSLPRGIFHNTP-KLTTLSMSNN-NLERI--E 157

Query: 145 DGIQSSSRRYTS-YL----LEKLEIWDCPSLTCI-FSKNEL-----PATLESLEV-GNQP 192
           D    ++    +  L    L  +++   PSL     S N L     P  +E L+   N  
Sbjct: 158 DDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNS- 216

Query: 193 PSLKSLNVWSCSKLESIAERLDNN--------TSLEMISILWCEN--LKFLPSG-LHNLR 241
             +  +      +L  +  +L +N         +   +  +      L+ +       ++
Sbjct: 217 --INVVRGPVNVELTIL--KLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQ 272

Query: 242 QLQEIQLWGCENLVSFPEGGLPCAKLSKLGIYRCERLEALPKGLHNLKSLKKLRIGG-KL 300
           +L+ + +     LV+    G P   L  L +     L  + +       L+ L +    +
Sbjct: 273 RLERLYISNN-RLVALNLYGQPIPTLKVLDLSHN-HLLHVERNQPQFDRLENLYLDHNSI 330

Query: 301 PSLEEDGLPTNLHFLKIERN 320
            +L+       L  L +  N
Sbjct: 331 VTLKLSTHH-TLKNLTLSHN 349

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 42.5 bits (100), Expect = 3e-04
 Identities = 75/446 (16%), Positives = 134/446 (30%), Gaps = 112/446 (25%)

Query: 30  RLEYLILRYCKGLVKLPQSS---LSLSSLREIEICRCH--SLVSFPEVALPSKLKKIEIR 84
            L+ +     + +  + +     L   +L    +      S VS       +  + + + 
Sbjct: 149 SLKSIDFSSNQ-IFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLE 207

Query: 85  ECD----ALKSLPEAWMCGTNSSLEILKIWSCHSL--------------PYIARVQLPPS 126
             D                  S  +   +   H +                        S
Sbjct: 208 ILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSS 267

Query: 127 LKRLDISHCDNIRTLTVEDGIQSSSRRYTSYLLEKLEIWDCPSLTCIF-SKNELP----- 180
           ++ LD+SH   + +L              S + E L       L  +  + N++      
Sbjct: 268 VRHLDLSHG-FVFSLN-------------SRVFETL-----KDLKVLNLAYNKINKIADE 308

Query: 181 --ATLESLEV----GNQPPSLKSLNVWSCSKLESIAERLDNN--TSLEMISILWCENLKF 232
               L++L+V     N    L S N +   K+  I   L  N    ++  +  + E L+ 
Sbjct: 309 AFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYI--DLQKNHIAIIQDQTFKFLEKLQT 366

Query: 233 L------PSGLHNLRQLQEIQLWGCENLVSFPEGGLPCAKLSKLGIYRCERLEALPKG-- 284
           L       + +H +  + +I L     LV+ P+  L    +         RLE L     
Sbjct: 367 LDLRDNALTTIHFIPSIPDIFL-SGNKLVTLPKINLTANLIHLSEN----RLENLDILYF 421

Query: 285 LHNLKSLKKLRIGG-KLPSLEEDGL---PTNLHFLKIERNM--EIWKSMIERG-FHKFSS 337
           L  +  L+ L +   +  S   D       +L  L +  NM    W++ +    F   S 
Sbjct: 422 LLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSH 481

Query: 338 LRHLTIEGCDDDMVSFPPEDRRLGTTLPLPASLASLTIGDFPNLERLSSSIVDLQNLKYL 397
           L+ L +                          L SL  G F +L            L+ L
Sbjct: 482 LQVLYLNHNY----------------------LNSLPPGVFSHLT----------ALRGL 509

Query: 398 KLYDCPKLKYFSEKGLPSSLLRLYID 423
            L    +L   S   LP++L  L I 
Sbjct: 510 SLNSN-RLTVLSHNDLPANLEILDIS 534

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 41.5 bits (98), Expect = 3e-04
 Identities = 38/277 (13%), Positives = 80/277 (28%), Gaps = 44/277 (15%)

Query: 208 SIAERLDNNTSLEMISILWCENLKFLPSG-LHNLRQLQEIQLWGCENLVSFPEGGL-PCA 265
           +I E   N    ++   +   +LK   +    +   ++E+ L G   L       L P  
Sbjct: 1   AIHEIKQNGNRYKIEK-VTDSSLKQALASLRQSAWNVKELDLSGN-PLSQISAADLAPFT 58

Query: 266 KLSKLGIYRCERLEALPKGLHNLKSLKKLRIGG-------KLPSLEE------------D 306
           KL  L +     L      L +L +L+ L +           PS+E              
Sbjct: 59  KLELLNLSSN-VLYETL-DLESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSC 116

Query: 307 GLPTNLHFLKIERNMEIWKSMIERGFHKFSSLRHLTIEGCDDDMVSFPPEDRRLG----- 361
                   + +  N +I   + +      S +++L ++  + D V+F             
Sbjct: 117 SRGQGKKNIYLANN-KI-TMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHL 174

Query: 362 -------TTLPLPASLASLTIGDFPN--LERLSSSIVDLQNLKYLKLYDCPKLKYFSEK- 411
                    +      A L   D  +  L  +         + ++ L +  KL    +  
Sbjct: 175 NLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNN-KLVLIEKAL 233

Query: 412 GLPSSLLRLYIDECPLIEEKCRKDGEQYWDLLTHIPR 448
               +L    +           +D       +  + +
Sbjct: 234 RFSQNLEHFDLRGNG-FHCGTLRDFFSKNQRVQTVAK 269

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 41.5 bits (98), Expect = 5e-04
 Identities = 57/349 (16%), Positives = 102/349 (29%), Gaps = 103/349 (29%)

Query: 123 LPPSLKRLDISHCDNIRTLTVEDGIQSSSRRYTSYLLEKLEIWDCPSLTCIFSKNEL--- 179
           LP ++  L+++H   +R L       ++  RY+   L  L++            N +   
Sbjct: 23  LPTNITVLNLTHN-QLRRL-----PAANFTRYSQ--LTSLDV----------GFNTISKL 64

Query: 180 -PATLESLEVGNQPPSLKSLNV-------------WSCSKLESIAERLDNN--TSLEMIS 223
            P   + L      P LK LN+               C+ L  +   L +N    ++   
Sbjct: 65  EPELCQKL------PMLKVLNLQHNELSQLSDKTFAFCTNLTEL--HLMSNSIQKIKNNP 116

Query: 224 ILWCENLKFL-----------PSGLHNLRQLQEIQLWGCENLVSFPE---GGLPCAKLSK 269
            +  +NL  L                 L  LQE+ L     + +           + L K
Sbjct: 117 FVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNN-KIQALKSEELDIFANSSLKK 175

Query: 270 LGIYRCERLEALPKG-LHNLKSLKKLRIGG---------------KLPSLEE-------- 305
           L +    +++    G  H +  L  L +                    S+          
Sbjct: 176 LELSSN-QIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQL 234

Query: 306 --------DGLP-TNLHFLKIERNMEIWKSMIERGFHKFSSLRHLTIEGCDDDMVSFPPE 356
                    GL  TNL  L +  N      +    F     L +  +E    ++      
Sbjct: 235 STTSNTTFLGLKWTNLTMLDLSYNN--LNVVGNDSFAWLPQLEYFFLEYN--NIQHLFSH 290

Query: 357 D----RRLGTTLPLPASLASLTIGDFPNLERLSSSIVDLQNLKYLKLYD 401
                  +   L L  S    +I      +    S   L+ L++L + D
Sbjct: 291 SLHGLFNV-RYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMED 338

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 40.8 bits (96), Expect = 6e-04
 Identities = 34/240 (14%), Positives = 75/240 (31%), Gaps = 55/240 (22%)

Query: 123 LPPSLKRLDISHCDNIRTLTVE--DGIQS------SSRRYTSYLLEKLEIWDCPSLTCIF 174
           +P +L+ L +     I  +     +G+         +    S  +E         L+ I 
Sbjct: 119 MPKTLQELRVHEN-EITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIR 177

Query: 175 -SKNELPATLESLEVGNQPPSLKSLNVWSCSKLESIAERLDNNTSLEMISILWCENLKFL 233
            +   +     ++  G  PPSL  L              LD N             +  +
Sbjct: 178 IADTNI----TTIPQGL-PPSLTEL-------------HLDGN------------KITKV 207

Query: 234 PSG-LHNLRQLQEIQLWGCENLVSFPEGGL-PCAKLSKLGIYRCERLEALPKGLHNLKSL 291
            +  L  L  L ++ L    ++ +   G L     L +L +    +L  +P GL + K +
Sbjct: 208 DAASLKGLNNLAKLGLSFN-SISAVDNGSLANTPHLRELHLNNN-KLVKVPGGLADHKYI 265

Query: 292 KKLRIGG-KLPSLEEDGLP--------TNLHFLKIERNMEIWKSMIERG-FHKFSSLRHL 341
           + + +    + ++  +            +   + +  N  +    I+   F        +
Sbjct: 266 QVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSN-PVQYWEIQPSTFRCVYVRAAV 324

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 41.1 bits (96), Expect = 6e-04
 Identities = 51/320 (15%), Positives = 107/320 (33%), Gaps = 45/320 (14%)

Query: 30  RLEYLILRYCKGLVKLPQSSLS-LSSLREIEICRCHSLVSFPEVALP--SKLKKIEIREC 86
             + +  +    + KLP + L     +  + +     +      A      ++K+ +   
Sbjct: 52  NQKIVTFKNST-MRKLPAALLDSFRQVELLNLNDLQ-IEEIDTYAFAYAHTIQKLYMGFN 109

Query: 87  DALKSLPEAWMCGTNSSLEILKIWSC--HSLPYIARVQLPPSLKRLDISHCDNIRTLTVE 144
            A++ LP          L +L +      SLP       P  L  L +S+  N+  +  E
Sbjct: 110 -AIRYLPPHVFQNV-PLLTVLVLERNDLSSLPRGIFHNTP-KLTTLSMSNN-NLERI--E 163

Query: 145 DGIQSSSRRYTS-YL----LEKLEIWDCPSLTCI-FSKNEL-----PATLESLEV-GNQP 192
           D    ++    +  L    L  +++   PSL     S N L     P  +E L+   N  
Sbjct: 164 DDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNS- 222

Query: 193 PSLKSLNVWSCSKLESIAERLDNN--------TSLEMISILWCEN--LKFLPSG-LHNLR 241
             +  +      +L  +  +L +N         +   +  +      L+ +       ++
Sbjct: 223 --INVVRGPVNVELTIL--KLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQ 278

Query: 242 QLQEIQLWGCENLVSFPEGGLPCAKLSKLGIYRCERLEALPKGLHNLKSLKKLRIGG-KL 300
           +L+ + +     LV+    G P   L  L +     L  + +       L+ L +    +
Sbjct: 279 RLERLYISNN-RLVALNLYGQPIPTLKVLDLSHN-HLLHVERNQPQFDRLENLYLDHNSI 336

Query: 301 PSLEEDGLPTNLHFLKIERN 320
            +L+       L  L +  N
Sbjct: 337 VTLKLSTHH-TLKNLTLSHN 355

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 40.5 bits (95), Expect = 7e-04
 Identities = 47/199 (23%), Positives = 73/199 (36%), Gaps = 35/199 (17%)

Query: 179 LPATLESLEV-GNQPPSLKSLNVWSCSKLESIAERLDNN--------TSLEMISILWCEN 229
           LP     L +  N   +     +   ++L  +   LD           +L ++  L   +
Sbjct: 29  LPKDTTILHLSENLLYTFSLATLMPYTRLTQL--NLDRAELTKLQVDGTLPVLGTLDLSH 86

Query: 230 --LKFLPSGLHNLRQLQEIQLWGCEN-LVSFPEG---GLPCAKLSKLGIYRCERLEALPK 283
             L+ LP     L  L    L    N L S P G   GL   +L +L +     L+ LP 
Sbjct: 87  NQLQSLPLLGQTLPALTV--LDVSFNRLTSLPLGALRGLG--ELQELYLKGN-ELKTLPP 141

Query: 284 GL-HNLKSLKKLRIGG-KLPSLEE---DGLPTNLHFLKIERNMEIWKSMIERGFHKFSSL 338
           GL      L+KL +    L  L     +GL  NL  L ++ N       I +GF     L
Sbjct: 142 GLLTPTPKLEKLSLANNNLTELPAGLLNGL-ENLDTLLLQEN---SLYTIPKGFFGSHLL 197

Query: 339 RHLTIEG----CDDDMVSF 353
               + G    C+ +++ F
Sbjct: 198 PFAFLHGNPWLCNCEILYF 216

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 40.6 bits (96), Expect = 8e-04
 Identities = 53/303 (17%), Positives = 104/303 (34%), Gaps = 61/303 (20%)

Query: 159 LEKLEIWDCPSLTCIFSKNELPATLESLEV-GNQPPSLKSLNVWSCSKLESIAERLDNNT 217
             +  +    S+T + ++ EL  ++  L V G +  S++ +     + LE +   L+ N 
Sbjct: 24  GIRAVLQKA-SVTDVVTQEELE-SITKLVVAGEKVASIQGIE--YLTNLEYL--NLNGNQ 77

Query: 218 SLEMISILWCENLKFL---------PSGLHNLRQLQEIQLWGCENLVSFPEGGLPCAKLS 268
             ++  +     L  L          S L NL  L+E+ L    + +S         K+ 
Sbjct: 78  ITDISPLSNLVKLTNLYIGTNKITDISALQNLTNLRELYLNE--DNISDISPLANLTKMY 135

Query: 269 KLGIYRCERLEALPKGLHNLKSLKKLRIGG-KLPSLEEDGLPTNLHFLKIERNMEIWKSM 327
            L +       +    L N+  L  L +   K+  +      T+L+ L +  N +I    
Sbjct: 136 SLNLGAN-HNLSDLSPLSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYN-QI--ED 191

Query: 328 IERGFHKFSSLRHLTIEGCDDDMVSFPPEDRRLGTTLPLPASLASLT------------- 374
           I       +SL + T                ++ T +   A++  L              
Sbjct: 192 IS-PLASLTSLHYFTAYVN------------QI-TDITPVANMTRLNSLKIGNNKITDLS 237

Query: 375 -IGDFPNLERLS---------SSIVDLQNLKYLKLYDCPKLKYFSEKGLPSSLLRLYIDE 424
            + +   L  L          +++ DL  LK L +    ++   S     S L  L+++ 
Sbjct: 238 PLANLSQLTWLEIGTNQISDINAVKDLTKLKMLNVGSN-QISDISVLNNLSQLNSLFLNN 296

Query: 425 CPL 427
             L
Sbjct: 297 NQL 299

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	461
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.97
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.97
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.97
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.97
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.96
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.96
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.96
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.96
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.96
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.96
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.96
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.96
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.96
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.95
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.95
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.95
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.95
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.94
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.94
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.94
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.94
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.94
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.93
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.93
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.93
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.93
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.92
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.92
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.92
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.91
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.91
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.91
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.91
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.91
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.9
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.9
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.89
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.89
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.88
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.87
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.87
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.86
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.85
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.85
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.85
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.83
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.82
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.82
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.81
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.81
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.8
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.8
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.8
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.79
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.78
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.78
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.78
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.78
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.77
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.77
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.76
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.76
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.76
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.75
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.75
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.74
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.73
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.73
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.72
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.7
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.68
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.67
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.67
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.67
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.66
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.64
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.64
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.62
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.61
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.61
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.61
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.61
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.6
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.6
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.59
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.58
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.58
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.58
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.55
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.54
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.48
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.45
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.45
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.44
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.41
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.4
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.39
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.36
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.36
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.36
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.36
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.35
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.34
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.34
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.32
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.25
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.25
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.2
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.2
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.19
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.17
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.16
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.15
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.15
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.13
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.12
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.12
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.12
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.11
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.1
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.1
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.06
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.04
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.01
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.01
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.0
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	98.97
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	98.96
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	98.96
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	98.91
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	98.9
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	98.88
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	98.85
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	98.83
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	98.83
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	98.76
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.75
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	98.74
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.67
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	98.63
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	98.59
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	98.55
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	98.48
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	98.48
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.47
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	98.47
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	98.42
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.35
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.32
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.28
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.27
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.2
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.18
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.08
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	97.89
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	97.83
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	96.72
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	96.71
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	96.52
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	96.38
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	92.2
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	90.34

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.97  E-value=3e-29  Score=257.46  Aligned_cols=409  Identities=15%  Similarity=0.121  Sum_probs=197.5

Q ss_pred             hhhhhhhhcCCccEEEecCCcCCccccccCCCCCCcCEEEecCCcCcccccC--CCCCCCccEEEEeecCCccccC-ccc
Q 045021           20 QQQQLCELSCRLEYLILRYCKGLVKLPQSSLSLSSLREIEICRCHSLVSFPE--VALPSKLKKIEIRECDALKSLP-EAW   96 (461)
Q Consensus        20 ~l~~l~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~--~~~l~~L~~L~l~~~~~l~~~~-~~~   96 (461)
                      .+..+    ++|++|+++++.-....|..|.++++|++|++++|. +..+++  ++.+++|++|+++++. +..++ ..+
T Consensus        52 ~~~~l----~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~-i~~l~~~~~  125 (606)
T 3t6q_A           52 TFSRL----INLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANP-LIFMAETALSGPKALKHLFFIQTG-ISSIDFIPL  125 (606)
T ss_dssp             TSTTC----TTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC-CSEECTTTTSSCTTCCEEECTTSC-CSCGGGSCC
T ss_pred             HhccC----ccceEEECCCCccceeChhhccCccccCeeeCCCCc-ccccChhhhcccccccEeeccccC-cccCCcchh
Confidence            45555    777777777643222335567777777777777753 333422  6667777777777654 55442 333


Q ss_pred             ccCCCCcccEEEeeCCCCCccc--cccCCCCCccEEecccCCCceEe-ccCCCcccccccccccCcc--EEEEecCCCCe
Q 045021           97 MCGTNSSLEILKIWSCHSLPYI--ARVQLPPSLKRLDISHCDNIRTL-TVEDGIQSSSRRYTSYLLE--KLEIWDCPSLT  171 (461)
Q Consensus        97 ~~~~~~~L~~L~l~~~~~l~~~--~~~~~~~~L~~L~l~~~~~~~~l-~~~~~~~~~~~~~~~~~L~--~L~l~~~~~l~  171 (461)
                      ..  +++|++|+++++ .++.+  +....+++|++|+++++. +..+ +  ..+..      +++|+  .|++++ +.+.
T Consensus       126 ~~--l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~--~~~~~------l~~L~~l~L~l~~-n~l~  192 (606)
T 3t6q_A          126 HN--QKTLESLYLGSN-HISSIKLPKGFPTEKLKVLDFQNNA-IHYLSK--EDMSS------LQQATNLSLNLNG-NDIA  192 (606)
T ss_dssp             TT--CTTCCEEECCSS-CCCCCCCCTTCCCTTCCEEECCSSC-CCEECH--HHHHT------TTTCCSEEEECTT-CCCC
T ss_pred             cc--CCcccEEECCCC-cccccCcccccCCcccCEEEcccCc-ccccCh--hhhhh------hcccceeEEecCC-CccC
Confidence            22  367777777664 34333  333446677777776654 2222 2  22222      23344  444444 3333


Q ss_pred             ecccCCCCcc-----------------------------------------------------hhhhccc----------
Q 045021          172 CIFSKNELPA-----------------------------------------------------TLESLEV----------  188 (461)
Q Consensus       172 ~~~~~~~~~~-----------------------------------------------------~~~~~~~----------  188 (461)
                      . .+...+..                                                     .++.+.+          
T Consensus       193 ~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~  271 (606)
T 3t6q_A          193 G-IEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISS  271 (606)
T ss_dssp             E-ECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCT
T ss_pred             c-cChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCH
Confidence            3 11111100                                                     0000000          


Q ss_pred             --CCCCCCccEEEEecCCchhhhHHhhcCCCccceeeccccccceecccccCCCCCccEEEecCCCCCccCCC-CCCCCC
Q 045021          189 --GNQPPSLKSLNVWSCSKLESIAERLDNNTSLEMISILWCENLKFLPSGLHNLRQLQEIQLWGCENLVSFPE-GGLPCA  265 (461)
Q Consensus       189 --~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~-~~~~~~  265 (461)
                        ...+++|++|++.++ .+..+|..+..+++|++|++++|......+..+..+++|++|++++|.....++. ....++
T Consensus       272 ~~~~~l~~L~~L~l~~n-~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~  350 (606)
T 3t6q_A          272 NTFHCFSGLQELDLTAT-HLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLE  350 (606)
T ss_dssp             TTTTTCTTCSEEECTTS-CCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCT
T ss_pred             HHhccccCCCEEeccCC-ccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccC
Confidence              111244555555553 3334444455555555555555432222234455555555555555533323333 233445


Q ss_pred             CcceEeeccCcccccc--ccccCCCCCccEEEecc-cCCCcCCC--CCCCCcceEEeecCchhhHHhhhhcccCCCCcCE
Q 045021          266 KLSKLGIYRCERLEAL--PKGLHNLKSLKKLRIGG-KLPSLEED--GLPTNLHFLKIERNMEIWKSMIERGFHKFSSLRH  340 (461)
Q Consensus       266 ~L~~L~l~~c~~~~~~--~~~~~~l~~L~~L~l~~-~~~~l~~~--~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~  340 (461)
                      +|++|++++|......  +..+..+++|++|++++ .+..+...  ..+++|++|++++|.. ....+...+..+++|++
T Consensus       351 ~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~~l~~L~~  429 (606)
T 3t6q_A          351 NLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRL-KVKDAQSPFQNLHLLKV  429 (606)
T ss_dssp             TCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCE-ECCTTCCTTTTCTTCCE
T ss_pred             cCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcC-CCcccchhhhCcccCCE
Confidence            5666666554322211  33455566666666655 33333211  3345666666666552 21222223455666666


Q ss_pred             EEEecCCCcccccCccccccCCCCCCCCCcceeecCCCCCCcc--cc--cchhhccCCcEEEecCCCCCcccCCCCC--c
Q 045021          341 LTIEGCDDDMVSFPPEDRRLGTTLPLPASLASLTIGDFPNLER--LS--SSIVDLQNLKYLKLYDCPKLKYFSEKGL--P  414 (461)
Q Consensus       341 L~l~~~~~~~~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~--i~--~~~~~~~~L~~L~l~~C~~l~~~~~~~~--~  414 (461)
                      |++++|  .+...+...+      ..+++|++|+++++ .+..  ++  ..+..+++|++|++++ ++++.++...+  .
T Consensus       430 L~l~~n--~l~~~~~~~~------~~l~~L~~L~L~~n-~l~~~~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l  499 (606)
T 3t6q_A          430 LNLSHS--LLDISSEQLF------DGLPALQHLNLQGN-HFPKGNIQKTNSLQTLGRLEILVLSF-CDLSSIDQHAFTSL  499 (606)
T ss_dssp             EECTTC--CCBTTCTTTT------TTCTTCCEEECTTC-BCGGGEECSSCGGGGCTTCCEEECTT-SCCCEECTTTTTTC
T ss_pred             EECCCC--ccCCcCHHHH------hCCCCCCEEECCCC-CCCccccccchhhccCCCccEEECCC-CccCccChhhhccc
Confidence            666665  4443332212      24556666666664 3332  11  3455666666666666 35555543222  4


Q ss_pred             ccccEeeccCCchhHHhhc------------------ccCccccccccccceEEEcccEEecCC
Q 045021          415 SSLLRLYIDECPLIEEKCR------------------KDGEQYWDLLTHIPRVRIHLPVVFDDS  460 (461)
Q Consensus       415 ~~L~~L~i~~c~~l~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~  460 (461)
                      ++|++|++++|........                  ......+..+.++..+++.+|++.+++
T Consensus       500 ~~L~~L~Ls~N~l~~~~~~~l~~l~~L~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c  563 (606)
T 3t6q_A          500 KMMNHVDLSHNRLTSSSIEALSHLKGIYLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTC  563 (606)
T ss_dssp             TTCCEEECCSSCCCGGGGGGGTTCCSCEEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSG
T ss_pred             cCCCEEECCCCccCcCChhHhCcccccEEECcCCcccccCHhhcccCCCCCEEeCCCCCccccC
Confidence            6666666666632211100                  001112334556777888888877654

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.97  E-value=9.9e-31  Score=274.87  Aligned_cols=389  Identities=17%  Similarity=0.132  Sum_probs=231.1

Q ss_pred             CCccEEEecCCcCCccccccCCC-CCCcCEEEecCCcCcccccC-CCCCCCccEEEEeecCCccccCcc-cccCCCCccc
Q 045021           29 CRLEYLILRYCKGLVKLPQSSLS-LSSLREIEICRCHSLVSFPE-VALPSKLKKIEIRECDALKSLPEA-WMCGTNSSLE  105 (461)
Q Consensus        29 ~~L~~L~l~~~~~l~~l~~~~~~-l~~L~~L~l~~~~~l~~~~~-~~~l~~L~~L~l~~~~~l~~~~~~-~~~~~~~~L~  105 (461)
                      ++|++|+++++.-...+|..+.. +++|++|++++|.....+|. ++.+++|++|++++|.....+|.. +...  ++|+
T Consensus       269 ~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l--~~L~  346 (768)
T 3rgz_A          269 KSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKM--RGLK  346 (768)
T ss_dssp             TTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTC--TTCC
T ss_pred             CCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcC--CCCC
Confidence            56666666654322244544443 25555555555532223333 455555555555554422244433 2222  4455


Q ss_pred             EEEeeCCCC------------------------Cc-ccccc-C--CCCCccEEecccCCCceEeccCCCccccccccccc
Q 045021          106 ILKIWSCHS------------------------LP-YIARV-Q--LPPSLKRLDISHCDNIRTLTVEDGIQSSSRRYTSY  157 (461)
Q Consensus       106 ~L~l~~~~~------------------------l~-~~~~~-~--~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~~~  157 (461)
                      +|+++++..                        ++ .++.. .  .+++|++|+++++.....+|  ..+..      ++
T Consensus       347 ~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p--~~l~~------l~  418 (768)
T 3rgz_A          347 VLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIP--PTLSN------CS  418 (768)
T ss_dssp             EEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECC--GGGGG------CT
T ss_pred             EEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccC--HHHhc------CC
Confidence            555544321                        11 11111 1  14556666666655333455  44444      55


Q ss_pred             CccEEEEecCCCCeecccCCCCcchhhhcccCCCCCCccEEEEecCCchhhhHHhhcCCCccceeeccccccceeccccc
Q 045021          158 LLEKLEIWDCPSLTCIFSKNELPATLESLEVGNQPPSLKSLNVWSCSKLESIAERLDNNTSLEMISILWCENLKFLPSGL  237 (461)
Q Consensus       158 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~  237 (461)
                      +|+.|++++ +.++...|. .+..          +++|+.|++.++.....++..+..+++|++|++++|.....+|..+
T Consensus       419 ~L~~L~Ls~-N~l~~~~p~-~l~~----------l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l  486 (768)
T 3rgz_A          419 ELVSLHLSF-NYLSGTIPS-SLGS----------LSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGL  486 (768)
T ss_dssp             TCCEEECCS-SEEESCCCG-GGGG----------CTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGG
T ss_pred             CCCEEECcC-CcccCcccH-HHhc----------CCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHH
Confidence            777777777 454431111 1111          2578888888876555667777888888888888876555677788


Q ss_pred             CCCCCccEEEecCCCCCccCCCCCCCCCCcceEeeccCccccccccccCCCCCccEEEecc-cCC-CcCC----------
Q 045021          238 HNLRQLQEIQLWGCENLVSFPEGGLPCAKLSKLGIYRCERLEALPKGLHNLKSLKKLRIGG-KLP-SLEE----------  305 (461)
Q Consensus       238 ~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~l~~L~~L~l~~-~~~-~l~~----------  305 (461)
                      ..+++|+.|++++|.....+|.....+++|++|++++|.....+|..+..+++|++|++++ .+. .+|.          
T Consensus       487 ~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~  566 (768)
T 3rgz_A          487 SNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIA  566 (768)
T ss_dssp             GGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBC
T ss_pred             hcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhh
Confidence            8888888888888865556666666677888888888776667788888888888888887 221 1111          


Q ss_pred             -------------------------------------------------------------CCCCCCcceEEeecCchhh
Q 045021          306 -------------------------------------------------------------DGLPTNLHFLKIERNMEIW  324 (461)
Q Consensus       306 -------------------------------------------------------------~~~~~~L~~L~l~~~~~l~  324 (461)
                                                                                   ...+++|+.|++++|. +.
T Consensus       567 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~-l~  645 (768)
T 3rgz_A          567 ANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNM-LS  645 (768)
T ss_dssp             CSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSC-CB
T ss_pred             hhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCc-cc
Confidence                                                                         1123568888888887 33


Q ss_pred             HHhhhhcccCCCCcCEEEEecCCCccc-ccCccccccCCCCCCCCCcceeecCCCCCCcccccchhhccCCcEEEecCCC
Q 045021          325 KSMIERGFHKFSSLRHLTIEGCDDDMV-SFPPEDRRLGTTLPLPASLASLTIGDFPNLERLSSSIVDLQNLKYLKLYDCP  403 (461)
Q Consensus       325 ~~~~~~~~~~l~~L~~L~l~~~~~~~~-~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~L~~L~l~~C~  403 (461)
                      +..+ ..++.+++|+.|++++|  .+. .+|.. ++      .+++|++|+++++.-...+|..+..+++|++|++++++
T Consensus       646 g~ip-~~l~~l~~L~~L~Ls~N--~l~g~ip~~-l~------~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~  715 (768)
T 3rgz_A          646 GYIP-KEIGSMPYLFILNLGHN--DISGSIPDE-VG------DLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNN  715 (768)
T ss_dssp             SCCC-GGGGGCTTCCEEECCSS--CCCSCCCGG-GG------GCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSE
T ss_pred             ccCC-HHHhccccCCEEeCcCC--ccCCCCChH-Hh------CCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCc
Confidence            3333 24778888999999987  554 66766 53      67789999999853334778888888999999999843


Q ss_pred             CCcccCCCCCcccccEeeccCCchh----HHhhcccCccccccccccceEE
Q 045021          404 KLKYFSEKGLPSSLLRLYIDECPLI----EEKCRKDGEQYWDLLTHIPRVR  450 (461)
Q Consensus       404 ~l~~~~~~~~~~~L~~L~i~~c~~l----~~~~~~~~~~~~~~~~~~~~~~  450 (461)
                      --..+|..+.+.++....+.+||.+    -..|....+++|.+++|++.++
T Consensus       716 l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l~~C~~~~~~~~~~~~~~~~~~  766 (768)
T 3rgz_A          716 LSGPIPEMGQFETFPPAKFLNNPGLCGYPLPRCDPSNADGYAHHQRSHHHH  766 (768)
T ss_dssp             EEEECCSSSSGGGSCGGGGCSCTEEESTTSCCCCSCC--------------
T ss_pred             ccccCCCchhhccCCHHHhcCCchhcCCCCcCCCCCccCCCCCCCCccccC
Confidence            3344666666667777777776532    2368888899999999998764

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.97  E-value=1.5e-29  Score=260.04  Aligned_cols=343  Identities=17%  Similarity=0.215  Sum_probs=256.9

Q ss_pred             ccccccCCCCCCcCEEEecCCcCccc------------------ccC-CC--CCCCccEEEEeecCCccccCcccccCCC
Q 045021           43 VKLPQSSLSLSSLREIEICRCHSLVS------------------FPE-VA--LPSKLKKIEIRECDALKSLPEAWMCGTN  101 (461)
Q Consensus        43 ~~l~~~~~~l~~L~~L~l~~~~~l~~------------------~~~-~~--~l~~L~~L~l~~~~~l~~~~~~~~~~~~  101 (461)
                      ..+|..++++++|++|++++|. +..                  +|. ++  .+++|++|++++|.....+|..+...  
T Consensus       196 ~~ip~~l~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l--  272 (636)
T 4eco_A          196 TFVSKAVMRLTKLRQFYMGNSP-FVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKAL--  272 (636)
T ss_dssp             EEECGGGGGCTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTC--
T ss_pred             ccCCHHHhcccCCCEEECcCCc-cccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcC--
Confidence            3477778889999999999875 665                  777 77  89999999999987677788777766  


Q ss_pred             CcccEEEeeCCCCCcc--cccc-CC------CCCccEEecccCCCceEeccCC--CcccccccccccCccEEEEecCCCC
Q 045021          102 SSLEILKIWSCHSLPY--IARV-QL------PPSLKRLDISHCDNIRTLTVED--GIQSSSRRYTSYLLEKLEIWDCPSL  170 (461)
Q Consensus       102 ~~L~~L~l~~~~~l~~--~~~~-~~------~~~L~~L~l~~~~~~~~l~~~~--~~~~~~~~~~~~~L~~L~l~~~~~l  170 (461)
                      ++|+.|+++++..++.  +|.. ..      +++|++|+++++. +..+|  .  .+..      +++|+.|++++ +.+
T Consensus       273 ~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~-l~~ip--~~~~l~~------l~~L~~L~L~~-N~l  342 (636)
T 4eco_A          273 PEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNN-LKTFP--VETSLQK------MKKLGMLECLY-NQL  342 (636)
T ss_dssp             SSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSC-CSSCC--CHHHHTT------CTTCCEEECCS-CCC
T ss_pred             CCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCc-CCccC--chhhhcc------CCCCCEEeCcC-CcC
Confidence            8999999998754553  4433 32      3889999999876 44677  6  5555      66899999998 677


Q ss_pred             e-ecccCCCCcchhhhcccCCCCCCccEEEEecCCchhhhHHhhcCCCc-cceeeccccccceecccccCCCC--CccEE
Q 045021          171 T-CIFSKNELPATLESLEVGNQPPSLKSLNVWSCSKLESIAERLDNNTS-LEMISILWCENLKFLPSGLHNLR--QLQEI  246 (461)
Q Consensus       171 ~-~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~-L~~L~l~~~~~~~~~~~~~~~l~--~L~~L  246 (461)
                      + . +|  .+...          ++|+.|++.++ .+..+|..+..+++ |++|++++|. +..+|..+..++  +|+.|
T Consensus       343 ~g~-ip--~~~~l----------~~L~~L~L~~N-~l~~lp~~l~~l~~~L~~L~Ls~N~-l~~lp~~~~~~~l~~L~~L  407 (636)
T 4eco_A          343 EGK-LP--AFGSE----------IKLASLNLAYN-QITEIPANFCGFTEQVENLSFAHNK-LKYIPNIFDAKSVSVMSAI  407 (636)
T ss_dssp             EEE-CC--CCEEE----------EEESEEECCSS-EEEECCTTSEEECTTCCEEECCSSC-CSSCCSCCCTTCSSCEEEE
T ss_pred             ccc-hh--hhCCC----------CCCCEEECCCC-ccccccHhhhhhcccCcEEEccCCc-CcccchhhhhcccCccCEE
Confidence            7 5 55  33332          57999999885 45577777888888 9999999874 557787776654  89999


Q ss_pred             EecCCCCCccCCCCCC-------CCCCcceEeeccCccccccccc-cCCCCCccEEEecc-cCCCcCCCCCC--------
Q 045021          247 QLWGCENLVSFPEGGL-------PCAKLSKLGIYRCERLEALPKG-LHNLKSLKKLRIGG-KLPSLEEDGLP--------  309 (461)
Q Consensus       247 ~l~~~~~l~~l~~~~~-------~~~~L~~L~l~~c~~~~~~~~~-~~~l~~L~~L~l~~-~~~~l~~~~~~--------  309 (461)
                      ++++|......|....       .+++|++|++++|. ++.+|.. +..+++|++|++++ .+..++.....        
T Consensus       408 ~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~-l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~  486 (636)
T 4eco_A          408 DFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQ-ISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKN  486 (636)
T ss_dssp             ECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSC-CCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTT
T ss_pred             ECcCCcCCCcchhhhcccccccccCCCCCEEECcCCc-cCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccc
Confidence            9999855444444333       55689999999864 4566653 45689999999999 77777654221        


Q ss_pred             -CCcceEEeecCchhhHHhhhhcc--cCCCCcCEEEEecCCCcccccCccccccCCCCCCCCCcceeecCC------CCC
Q 045021          310 -TNLHFLKIERNMEIWKSMIERGF--HKFSSLRHLTIEGCDDDMVSFPPEDRRLGTTLPLPASLASLTIGD------FPN  380 (461)
Q Consensus       310 -~~L~~L~l~~~~~l~~~~~~~~~--~~l~~L~~L~l~~~~~~~~~i~~~~~~~~~~~~~~~~L~~L~l~~------~~~  380 (461)
                       ++|++|++++|. ++ ..+. .+  ..+++|++|++++|  .+..+|.. ++      .+++|+.|++++      +.-
T Consensus       487 l~~L~~L~Ls~N~-l~-~lp~-~~~~~~l~~L~~L~Ls~N--~l~~ip~~-~~------~l~~L~~L~Ls~N~~ls~N~l  554 (636)
T 4eco_A          487 TYLLTSIDLRFNK-LT-KLSD-DFRATTLPYLVGIDLSYN--SFSKFPTQ-PL------NSSTLKGFGIRNQRDAQGNRT  554 (636)
T ss_dssp             GGGCCEEECCSSC-CC-BCCG-GGSTTTCTTCCEEECCSS--CCSSCCCG-GG------GCSSCCEEECCSCBCTTCCBC
T ss_pred             cCCccEEECcCCc-CC-ccCh-hhhhccCCCcCEEECCCC--CCCCcChh-hh------cCCCCCEEECCCCcccccCcc
Confidence             289999999987 33 2332 34  38999999999998  77778776 43      678999999954      333


Q ss_pred             CcccccchhhccCCcEEEecCCCCCcccCCCCCcccccEeeccCCchh
Q 045021          381 LERLSSSIVDLQNLKYLKLYDCPKLKYFSEKGLPSSLLRLYIDECPLI  428 (461)
Q Consensus       381 l~~i~~~~~~~~~L~~L~l~~C~~l~~~~~~~~~~~L~~L~i~~c~~l  428 (461)
                      ...+|..+..+++|++|++++ ++++.+|.. +.++|++|++++|+..
T Consensus       555 ~~~~p~~l~~l~~L~~L~Ls~-N~l~~ip~~-~~~~L~~L~Ls~N~l~  600 (636)
T 4eco_A          555 LREWPEGITLCPSLTQLQIGS-NDIRKVNEK-ITPNISVLDIKDNPNI  600 (636)
T ss_dssp             CCCCCTTGGGCSSCCEEECCS-SCCCBCCSC-CCTTCCEEECCSCTTC
T ss_pred             cccChHHHhcCCCCCEEECCC-CcCCccCHh-HhCcCCEEECcCCCCc
Confidence            467788889999999999999 677888875 4489999999999643

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.97  E-value=5.5e-29  Score=261.59  Aligned_cols=428  Identities=17%  Similarity=0.126  Sum_probs=261.8

Q ss_pred             cCCCCccccccch--h---hhhhhhhhhhcCCccEEEecCCcCCccccccCCCCCCcCEEEecCCcCcccccCCCCCCCc
Q 045021            4 DSCPKLQSLVAEE--E---KDQQQQLCELSCRLEYLILRYCKGLVKLPQSSLSLSSLREIEICRCHSLVSFPEVALPSKL   78 (461)
Q Consensus         4 ~~c~~l~~l~~~~--~---~~~l~~l~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~l~~L   78 (461)
                      ..|.+|++|..+.  +   ...++.+    ++|++|+++++.--..+|..++.+++|++|++++|.....+|.. .+++|
T Consensus       197 ~~l~~L~~L~Ls~n~l~~~~~~l~~l----~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~-~l~~L  271 (768)
T 3rgz_A          197 SRCVNLEFLDVSSNNFSTGIPFLGDC----SALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL-PLKSL  271 (768)
T ss_dssp             TTCTTCCEEECCSSCCCSCCCBCTTC----CSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC-CCTTC
T ss_pred             ccCCcCCEEECcCCcCCCCCcccccC----CCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc-ccCCC
Confidence            4556666665421  1   1125555    78888888875432356667777888888888777433333333 56677


Q ss_pred             cEEEEeecCCccccCcccccCCCCcccEEEeeCCCCCcccccc-CCCCCccEEecccCCCceEeccCCC-cccccccccc
Q 045021           79 KKIEIRECDALKSLPEAWMCGTNSSLEILKIWSCHSLPYIARV-QLPPSLKRLDISHCDNIRTLTVEDG-IQSSSRRYTS  156 (461)
Q Consensus        79 ~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~~~L~~L~l~~~~~~~~l~~~~~-~~~~~~~~~~  156 (461)
                      ++|++++|.....+|..+... +++|++|+++++..-..++.. ..+++|++|+++++.....+|  .. +..      +
T Consensus       272 ~~L~L~~n~l~~~ip~~~~~~-~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip--~~~l~~------l  342 (768)
T 3rgz_A          272 QYLSLAENKFTGEIPDFLSGA-CDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELP--MDTLLK------M  342 (768)
T ss_dssp             CEEECCSSEEEESCCCCSCTT-CTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECC--HHHHTT------C
T ss_pred             CEEECcCCccCCccCHHHHhh-cCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCC--HHHHhc------C
Confidence            777777665222455544332 356666666664322222222 445566666666554222333  22 222      3


Q ss_pred             cCccEEEEecCCCCeecccCCCC--cchhhhccc--------------CCCCCCccEEEEecCCchhhhHHhhcCCCccc
Q 045021          157 YLLEKLEIWDCPSLTCIFSKNEL--PATLESLEV--------------GNQPPSLKSLNVWSCSKLESIAERLDNNTSLE  220 (461)
Q Consensus       157 ~~L~~L~l~~~~~l~~~~~~~~~--~~~~~~~~~--------------~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~  220 (461)
                      ++|+.|++++ +.+...+|....  +..++.+.+              ...+++|+.|++.+|.....++..+..+++|+
T Consensus       343 ~~L~~L~Ls~-n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~  421 (768)
T 3rgz_A          343 RGLKVLDLSF-NEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELV  421 (768)
T ss_dssp             TTCCEEECCS-SEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCC
T ss_pred             CCCCEEeCcC-CccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCC
Confidence            3455555554 233211111100  000111111              00135788898888765556777888899999


Q ss_pred             eeeccccccceecccccCCCCCccEEEecCCCCCccCCCCCCCCCCcceEeeccCccccccccccCCCCCccEEEecc-c
Q 045021          221 MISILWCENLKFLPSGLHNLRQLQEIQLWGCENLVSFPEGGLPCAKLSKLGIYRCERLEALPKGLHNLKSLKKLRIGG-K  299 (461)
Q Consensus       221 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~l~~L~~L~l~~-~  299 (461)
                      +|++++|.....+|..++.+++|+.|++++|.....++.....+++|++|++++|.....+|..+..+++|++|++++ .
T Consensus       422 ~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~  501 (768)
T 3rgz_A          422 SLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNR  501 (768)
T ss_dssp             EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSC
T ss_pred             EEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCc
Confidence            999998865557788888889999999998865556666666677899999998776667788888899999999988 5


Q ss_pred             CC-CcCCC-CCCCCcceEEeecCchhhHHhhhhcccCCCCcCEEEEecCCCccc-ccCccccccC---------------
Q 045021          300 LP-SLEED-GLPTNLHFLKIERNMEIWKSMIERGFHKFSSLRHLTIEGCDDDMV-SFPPEDRRLG---------------  361 (461)
Q Consensus       300 ~~-~l~~~-~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~i~~~~~~~~---------------  361 (461)
                      +. .+|.. +.+++|++|++++|.. ....+ ..+..+++|+.|++++|  .+. .+|.. +...               
T Consensus       502 l~~~~p~~~~~l~~L~~L~L~~N~l-~~~~p-~~l~~l~~L~~L~Ls~N--~l~g~ip~~-~~~~~~~~~~~~~~~~~~~  576 (768)
T 3rgz_A          502 LTGEIPKWIGRLENLAILKLSNNSF-SGNIP-AELGDCRSLIWLDLNTN--LFNGTIPAA-MFKQSGKIAANFIAGKRYV  576 (768)
T ss_dssp             CCSCCCGGGGGCTTCCEEECCSSCC-EEECC-GGGGGCTTCCEEECCSS--EEESBCCGG-GGTTTTCBCCSTTCSCEEE
T ss_pred             cCCcCChHHhcCCCCCEEECCCCcc-cCcCC-HHHcCCCCCCEEECCCC--ccCCcCChH-Hhcccchhhhhcccccccc
Confidence            54 44433 5677899999998873 22222 24778889999999887  332 44432 1100               


Q ss_pred             -------------------------------------------------CCCCCCCCcceeecCCCCCCcccccchhhcc
Q 045021          362 -------------------------------------------------TTLPLPASLASLTIGDFPNLERLSSSIVDLQ  392 (461)
Q Consensus       362 -------------------------------------------------~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~  392 (461)
                                                                       .....+++|+.|+++++.-...+|..+..++
T Consensus       577 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~  656 (768)
T 3rgz_A          577 YIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMP  656 (768)
T ss_dssp             EEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCT
T ss_pred             ccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccc
Confidence                                                             0011246788888888543347778888888


Q ss_pred             CCcEEEecCCCCCc-ccCCC-CCcccccEeeccCCchhHHhhcccCccccccccccceEEEcccEEe
Q 045021          393 NLKYLKLYDCPKLK-YFSEK-GLPSSLLRLYIDECPLIEEKCRKDGEQYWDLLTHIPRVRIHLPVVF  457 (461)
Q Consensus       393 ~L~~L~l~~C~~l~-~~~~~-~~~~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  457 (461)
                      +|+.|++++ ++++ .+|.. +-.++|++|++++|...     ....+.+..+..+..+++.+|.+.
T Consensus       657 ~L~~L~Ls~-N~l~g~ip~~l~~L~~L~~LdLs~N~l~-----g~ip~~l~~l~~L~~L~ls~N~l~  717 (768)
T 3rgz_A          657 YLFILNLGH-NDISGSIPDEVGDLRGLNILDLSSNKLD-----GRIPQAMSALTMLTEIDLSNNNLS  717 (768)
T ss_dssp             TCCEEECCS-SCCCSCCCGGGGGCTTCCEEECCSSCCE-----ECCCGGGGGCCCCSEEECCSSEEE
T ss_pred             cCCEEeCcC-CccCCCCChHHhCCCCCCEEECCCCccc-----CcCChHHhCCCCCCEEECcCCccc
Confidence            888888888 5665 45542 22578888888887532     112234556667777777777654

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.96  E-value=5.6e-28  Score=247.99  Aligned_cols=389  Identities=17%  Similarity=0.136  Sum_probs=217.1

Q ss_pred             ccCCCCccccccchh------hhhhhhhhhhcCCccEEEecCCcCCccccccCCCCCCcCEEEecCCcCcccccC--CCC
Q 045021            3 IDSCPKLQSLVAEEE------KDQQQQLCELSCRLEYLILRYCKGLVKLPQSSLSLSSLREIEICRCHSLVSFPE--VAL   74 (461)
Q Consensus         3 ~~~c~~l~~l~~~~~------~~~l~~l~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~--~~~   74 (461)
                      ++++++|++|..+.-      ...+..+    ++|++|+++++.-....|..++++++|++|++++| .+..+++  ++.
T Consensus        53 ~~~l~~L~~L~Ls~n~i~~~~~~~~~~l----~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~i~~l~~~~~~~  127 (606)
T 3t6q_A           53 FSRLINLTFLDLTRCQIYWIHEDTFQSQ----HRLDTLVLTANPLIFMAETALSGPKALKHLFFIQT-GISSIDFIPLHN  127 (606)
T ss_dssp             STTCTTCSEEECTTCCCCEECTTTTTTC----TTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTS-CCSCGGGSCCTT
T ss_pred             hccCccceEEECCCCccceeChhhccCc----cccCeeeCCCCcccccChhhhcccccccEeecccc-CcccCCcchhcc
Confidence            556677777665221      1446667    99999999985532344778999999999999997 4565533  788


Q ss_pred             CCCccEEEEeecCCccccC-cccccCCCCcccEEEeeCCCCCccccc--cCCCCCcc--EEecccCCCceEeccCCCccc
Q 045021           75 PSKLKKIEIRECDALKSLP-EAWMCGTNSSLEILKIWSCHSLPYIAR--VQLPPSLK--RLDISHCDNIRTLTVEDGIQS  149 (461)
Q Consensus        75 l~~L~~L~l~~~~~l~~~~-~~~~~~~~~~L~~L~l~~~~~l~~~~~--~~~~~~L~--~L~l~~~~~~~~l~~~~~~~~  149 (461)
                      +++|++|+++++. +..++ ..+..  +++|+.|+++++ .++.++.  ...+++|+  +|+++++.. ..++  .....
T Consensus       128 l~~L~~L~L~~n~-l~~~~~~~~~~--l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~l~L~l~~n~l-~~~~--~~~~~  200 (606)
T 3t6q_A          128 QKTLESLYLGSNH-ISSIKLPKGFP--TEKLKVLDFQNN-AIHYLSKEDMSSLQQATNLSLNLNGNDI-AGIE--PGAFD  200 (606)
T ss_dssp             CTTCCEEECCSSC-CCCCCCCTTCC--CTTCCEEECCSS-CCCEECHHHHHTTTTCCSEEEECTTCCC-CEEC--TTTTT
T ss_pred             CCcccEEECCCCc-ccccCcccccC--CcccCEEEcccC-cccccChhhhhhhcccceeEEecCCCcc-CccC--hhHhh
Confidence            9999999999976 66543 23333  488888888874 4444322  24455565  566655432 1111  10000


Q ss_pred             --------------------------------------------------------------------cc--ccccccCc
Q 045021          150 --------------------------------------------------------------------SS--RRYTSYLL  159 (461)
Q Consensus       150 --------------------------------------------------------------------~~--~~~~~~~L  159 (461)
                                                                                          ..  ....+++|
T Consensus       201 ~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L  280 (606)
T 3t6q_A          201 SAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGL  280 (606)
T ss_dssp             TCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTC
T ss_pred             hccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCC
Confidence                                                                                00  00113456


Q ss_pred             cEEEEecCCCCeecccCCCCcchhhhcccCCCCCCccEEEEecCCchhhhHHhhcCCCccceeeccccccceecc-cccC
Q 045021          160 EKLEIWDCPSLTCIFSKNELPATLESLEVGNQPPSLKSLNVWSCSKLESIAERLDNNTSLEMISILWCENLKFLP-SGLH  238 (461)
Q Consensus       160 ~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~  238 (461)
                      +.|++++ +.++. +|...           ..+++|++|++.++......+..+..+++|++|++++|.....++ ..+.
T Consensus       281 ~~L~l~~-n~l~~-lp~~l-----------~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~  347 (606)
T 3t6q_A          281 QELDLTA-THLSE-LPSGL-----------VGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLE  347 (606)
T ss_dssp             SEEECTT-SCCSC-CCSSC-----------CSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTT
T ss_pred             CEEeccC-CccCC-CChhh-----------cccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhh
Confidence            6666666 44444 33321           112456666666653333333445555555555555543332232 2244


Q ss_pred             CCCCccEEEecC--------------------------CCCCccCCCCCCCCCCcceEeeccCcccccccc-ccCCCCCc
Q 045021          239 NLRQLQEIQLWG--------------------------CENLVSFPEGGLPCAKLSKLGIYRCERLEALPK-GLHNLKSL  291 (461)
Q Consensus       239 ~l~~L~~L~l~~--------------------------~~~l~~l~~~~~~~~~L~~L~l~~c~~~~~~~~-~~~~l~~L  291 (461)
                      .+++|+.|++++                          |......+.....+++|++|++++|......+. .+..+++|
T Consensus       348 ~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L  427 (606)
T 3t6q_A          348 NLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLL  427 (606)
T ss_dssp             TCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTC
T ss_pred             ccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccC
Confidence            444555555544                          422222222333344555555555433222222 25556666


Q ss_pred             cEEEecc-cCCCcCC--CCCCCCcceEEeecCchhhHHh-hhhcccCCCCcCEEEEecCCCcccccCccccccCCCCCCC
Q 045021          292 KKLRIGG-KLPSLEE--DGLPTNLHFLKIERNMEIWKSM-IERGFHKFSSLRHLTIEGCDDDMVSFPPEDRRLGTTLPLP  367 (461)
Q Consensus       292 ~~L~l~~-~~~~l~~--~~~~~~L~~L~l~~~~~l~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~i~~~~~~~~~~~~~~  367 (461)
                      ++|++++ .+...+.  ...+++|++|++++|....... ....+..+++|++|++++|  .+..++...+      ..+
T Consensus       428 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n--~l~~~~~~~~------~~l  499 (606)
T 3t6q_A          428 KVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFC--DLSSIDQHAF------TSL  499 (606)
T ss_dssp             CEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTS--CCCEECTTTT------TTC
T ss_pred             CEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCC--ccCccChhhh------ccc
Confidence            6666666 4333222  1345667777777765222111 1123566777777777776  5555543323      256


Q ss_pred             CCcceeecCCCCCCc-ccccchhhccCCcEEEecCCCCCcccCCCCC--cccccEeeccCCch
Q 045021          368 ASLASLTIGDFPNLE-RLSSSIVDLQNLKYLKLYDCPKLKYFSEKGL--PSSLLRLYIDECPL  427 (461)
Q Consensus       368 ~~L~~L~l~~~~~l~-~i~~~~~~~~~L~~L~l~~C~~l~~~~~~~~--~~~L~~L~i~~c~~  427 (461)
                      ++|++|+++++ .+. ..+..+..+++| +|++++ ++++.++...+  .++|++|++++||.
T Consensus       500 ~~L~~L~Ls~N-~l~~~~~~~l~~l~~L-~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~N~~  559 (606)
T 3t6q_A          500 KMMNHVDLSHN-RLTSSSIEALSHLKGI-YLNLAS-NHISIILPSLLPILSQQRTINLRQNPL  559 (606)
T ss_dssp             TTCCEEECCSS-CCCGGGGGGGTTCCSC-EEECCS-SCCCCCCGGGHHHHHTSSEEECTTCCE
T ss_pred             cCCCEEECCCC-ccCcCChhHhCccccc-EEECcC-CcccccCHhhcccCCCCCEEeCCCCCc
Confidence            67888888875 443 344677777888 888888 66776665433  57889999998874

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.96  E-value=1e-28  Score=251.66  Aligned_cols=182  Identities=18%  Similarity=0.090  Sum_probs=99.0

Q ss_pred             CCCCcceEeeccCccccc--cccccCCCCCccEEEecc-cCCCcCC-CCCCCCcceEEeecCchhhHHhhhhcccCCCCc
Q 045021          263 PCAKLSKLGIYRCERLEA--LPKGLHNLKSLKKLRIGG-KLPSLEE-DGLPTNLHFLKIERNMEIWKSMIERGFHKFSSL  338 (461)
Q Consensus       263 ~~~~L~~L~l~~c~~~~~--~~~~~~~l~~L~~L~l~~-~~~~l~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L  338 (461)
                      .+++|++|++++|.....  .+..+..+++|++|++++ .+..++. ...+++|++|++++|. +....+...+..+++|
T Consensus       345 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L  423 (570)
T 2z63_A          345 DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSN-LKQMSEFSVFLSLRNL  423 (570)
T ss_dssp             BCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSE-EESCTTSCTTTTCTTC
T ss_pred             cCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCc-cccccchhhhhcCCCC
Confidence            345666666665432111  133455666666666666 4433332 2345566777776665 2222222245566777


Q ss_pred             CEEEEecCCCcccccCccccccCCCCCCCCCcceeecCCCCCCc--ccccchhhccCCcEEEecCCCCCcccCCCCC--c
Q 045021          339 RHLTIEGCDDDMVSFPPEDRRLGTTLPLPASLASLTIGDFPNLE--RLSSSIVDLQNLKYLKLYDCPKLKYFSEKGL--P  414 (461)
Q Consensus       339 ~~L~l~~~~~~~~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~--~i~~~~~~~~~L~~L~l~~C~~l~~~~~~~~--~  414 (461)
                      ++|++++|  .+.......+      ..+++|++|++++| .+.  .+|..+..+++|++|++++ ++++.++...+  +
T Consensus       424 ~~L~l~~n--~l~~~~~~~~------~~l~~L~~L~l~~n-~l~~~~~p~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l  493 (570)
T 2z63_A          424 IYLDISHT--HTRVAFNGIF------NGLSSLEVLKMAGN-SFQENFLPDIFTELRNLTFLDLSQ-CQLEQLSPTAFNSL  493 (570)
T ss_dssp             CEEECTTS--CCEECCTTTT------TTCTTCCEEECTTC-EEGGGEECSCCTTCTTCCEEECTT-SCCCEECTTTTTTC
T ss_pred             CEEeCcCC--cccccchhhh------hcCCcCcEEECcCC-cCccccchhhhhcccCCCEEECCC-CccccCChhhhhcc
Confidence            77777766  4444333213      24567777777774 333  4556666777777777777 45555533222  4


Q ss_pred             ccccEeeccCCchhHHhhcccCccccccccccceEEEcccEEecCC
Q 045021          415 SSLLRLYIDECPLIEEKCRKDGEQYWDLLTHIPRVRIHLPVVFDDS  460 (461)
Q Consensus       415 ~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  460 (461)
                      ++|++|++++|...     ......+..+.++..+++.+|.+.+++
T Consensus       494 ~~L~~L~l~~n~l~-----~~~~~~~~~l~~L~~L~l~~N~~~~~~  534 (570)
T 2z63_A          494 SSLQVLNMASNQLK-----SVPDGIFDRLTSLQKIWLHTNPWDCSC  534 (570)
T ss_dssp             TTCCEEECCSSCCS-----CCCTTTTTTCTTCCEEECCSSCBCCCT
T ss_pred             cCCCEEeCCCCcCC-----CCCHHHhhcccCCcEEEecCCcccCCC
Confidence            67777777776321     112223445566777777777766543

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.96  E-value=3.3e-28  Score=249.71  Aligned_cols=175  Identities=15%  Similarity=0.121  Sum_probs=96.1

Q ss_pred             CcceEeeccCccccccccccCCCCCccEEEecc-cCCCcC---CCCCCCCcceEEeecCchhhHHhhhhcccCCCCcCEE
Q 045021          266 KLSKLGIYRCERLEALPKGLHNLKSLKKLRIGG-KLPSLE---EDGLPTNLHFLKIERNMEIWKSMIERGFHKFSSLRHL  341 (461)
Q Consensus       266 ~L~~L~l~~c~~~~~~~~~~~~l~~L~~L~l~~-~~~~l~---~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L  341 (461)
                      +|++|++++|. ++.+|..+..+++|++|++++ .+..++   ....+++|++|++++|.... . ....+..+++|++|
T Consensus       377 ~L~~L~L~~n~-l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~-~-~~~~~~~l~~L~~L  453 (606)
T 3vq2_A          377 SLRHLDLSFNG-AIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKI-D-FDGIFLGLTSLNTL  453 (606)
T ss_dssp             CCCEEECCSCS-EEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEE-C-CTTTTTTCTTCCEE
T ss_pred             cccEeECCCCc-cccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCc-c-chhhhcCCCCCCEE
Confidence            34444444332 223334444555555555555 222221   12344556666666555211 1 11234556666666


Q ss_pred             EEecCCCcccc--cCccccccCCCCCCCCCcceeecCCCCCCccc-ccchhhccCCcEEEecCCCCCcccCCCCC--ccc
Q 045021          342 TIEGCDDDMVS--FPPEDRRLGTTLPLPASLASLTIGDFPNLERL-SSSIVDLQNLKYLKLYDCPKLKYFSEKGL--PSS  416 (461)
Q Consensus       342 ~l~~~~~~~~~--i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i-~~~~~~~~~L~~L~l~~C~~l~~~~~~~~--~~~  416 (461)
                      ++++|  .+..  ++.. +      ..+++|++|++++| .+..+ +..+..+++|++|++++ ++++.++...+  .++
T Consensus       454 ~l~~n--~l~~~~~~~~-~------~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~  522 (606)
T 3vq2_A          454 KMAGN--SFKDNTLSNV-F------ANTTNLTFLDLSKC-QLEQISWGVFDTLHRLQLLNMSH-NNLLFLDSSHYNQLYS  522 (606)
T ss_dssp             ECTTC--EEGGGEECSC-C------TTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCS-SCCSCEEGGGTTTCTT
T ss_pred             ECCCC--cCCCcchHHh-h------ccCCCCCEEECCCC-cCCccChhhhcccccCCEEECCC-CcCCCcCHHHccCCCc
Confidence            66665  4432  3332 3      25678888888885 45444 45677788888888888 46666533222  578


Q ss_pred             ccEeeccCCchhHHhhcccCcccccccc-ccceEEEcccEEecCC
Q 045021          417 LLRLYIDECPLIEEKCRKDGEQYWDLLT-HIPRVRIHLPVVFDDS  460 (461)
Q Consensus       417 L~~L~i~~c~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  460 (461)
                      |++|++++|... . .   .. .+..+. .+..+++.+|++.+++
T Consensus       523 L~~L~l~~N~l~-~-~---p~-~~~~l~~~L~~l~l~~N~~~c~c  561 (606)
T 3vq2_A          523 LSTLDCSFNRIE-T-S---KG-ILQHFPKSLAFFNLTNNSVACIC  561 (606)
T ss_dssp             CCEEECTTSCCC-C-E---ES-CGGGSCTTCCEEECCSCCCCCSS
T ss_pred             CCEEECCCCcCc-c-c---CH-hHhhhcccCcEEEccCCCcccCC
Confidence            888888887522 1 1   11 134443 5888999999888765

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.96  E-value=4.6e-29  Score=256.45  Aligned_cols=392  Identities=13%  Similarity=0.164  Sum_probs=290.2

Q ss_pred             CCccEEEecCCcCCccccccCCCCCCcCEEEecCCc--------------------------------------------
Q 045021           29 CRLEYLILRYCKGLVKLPQSSLSLSSLREIEICRCH--------------------------------------------   64 (461)
Q Consensus        29 ~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~--------------------------------------------   64 (461)
                      .+++.|+|+++.--..+|..++++++|++|++++|.                                            
T Consensus        81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~  160 (636)
T 4eco_A           81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSD  160 (636)
T ss_dssp             CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred             CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHH
Confidence            478888888855333678888889999999988763                                            


Q ss_pred             ---------------------------------CcccccC-CCCCCCccEEEEeecCCccc------------------c
Q 045021           65 ---------------------------------SLVSFPE-VALPSKLKKIEIRECDALKS------------------L   92 (461)
Q Consensus        65 ---------------------------------~l~~~~~-~~~l~~L~~L~l~~~~~l~~------------------~   92 (461)
                                                       .+..+|. ++.+++|++|+++++. +..                  +
T Consensus       161 ~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~ip~~l~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~~~~~~~~i  239 (636)
T 4eco_A          161 LIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSP-FVAENICEAWENENSEYAQQYK  239 (636)
T ss_dssp             HHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHT
T ss_pred             HHHHHhhcCccccccccccccchhhhhhccccCCCccCCHHHhcccCCCEEECcCCc-cccccccccccccccchhcccC
Confidence                                             2334666 8889999999999987 666                  8


Q ss_pred             Ccccc--cCCCCcccEEEeeCCCCCcccccc-CCCCCccEEecccCCCce--EeccCCCcccccccccccCccEEEEecC
Q 045021           93 PEAWM--CGTNSSLEILKIWSCHSLPYIARV-QLPPSLKRLDISHCDNIR--TLTVEDGIQSSSRRYTSYLLEKLEIWDC  167 (461)
Q Consensus        93 ~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~-~~~~~L~~L~l~~~~~~~--~l~~~~~~~~~~~~~~~~~L~~L~l~~~  167 (461)
                      |..+.  ..  ++|++|++++|.....+|.. ..+++|++|+++++..+.  .+|  ..+........+++|+.|++++ 
T Consensus       240 p~~l~~~~l--~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp--~~~~~L~~~~~l~~L~~L~L~~-  314 (636)
T 4eco_A          240 TEDLKWDNL--KDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLK--DDWQALADAPVGEKIQIIYIGY-  314 (636)
T ss_dssp             TSCCCGGGC--TTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHH--HHHHHHHHSGGGGTCCEEECCS-
T ss_pred             chhhhhccc--CCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccch--HHHHhhhccccCCCCCEEECCC-
Confidence            88877  66  99999999998766667654 788999999999987344  466  5554411111136899999999 


Q ss_pred             CCCeecccCCCCcchhhhcccCCCCCCccEEEEecCCchhhhHHhhcCCCccceeeccccccceecccccCCCCC-ccEE
Q 045021          168 PSLTCIFSKNELPATLESLEVGNQPPSLKSLNVWSCSKLESIAERLDNNTSLEMISILWCENLKFLPSGLHNLRQ-LQEI  246 (461)
Q Consensus       168 ~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~-L~~L  246 (461)
                      +.++. +|...   .+      ..+++|+.|++.++.....++ .+..+++|++|++++| .+..+|..+..+++ |+.|
T Consensus       315 n~l~~-ip~~~---~l------~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N-~l~~lp~~l~~l~~~L~~L  382 (636)
T 4eco_A          315 NNLKT-FPVET---SL------QKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYN-QITEIPANFCGFTEQVENL  382 (636)
T ss_dssp             SCCSS-CCCHH---HH------TTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSS-EEEECCTTSEEECTTCCEE
T ss_pred             CcCCc-cCchh---hh------ccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCC-ccccccHhhhhhcccCcEE
Confidence            66655 44300   11      112679999999975444777 7888999999999987 46688988999999 9999


Q ss_pred             EecCCCCCccCCCCCCC--CCCcceEeeccCccccccccccC-------CCCCccEEEecc-cCCCcCCC--CCCCCcce
Q 045021          247 QLWGCENLVSFPEGGLP--CAKLSKLGIYRCERLEALPKGLH-------NLKSLKKLRIGG-KLPSLEED--GLPTNLHF  314 (461)
Q Consensus       247 ~l~~~~~l~~l~~~~~~--~~~L~~L~l~~c~~~~~~~~~~~-------~l~~L~~L~l~~-~~~~l~~~--~~~~~L~~  314 (461)
                      ++++|. +..+|.....  +++|++|++++|......|..+.       .+++|++|++++ .+..++..  ..+++|++
T Consensus       383 ~Ls~N~-l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~  461 (636)
T 4eco_A          383 SFAHNK-LKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSS  461 (636)
T ss_dssp             ECCSSC-CSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSE
T ss_pred             EccCCc-CcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCE
Confidence            999984 5677775444  34899999999876666676676       788999999999 77777764  34789999


Q ss_pred             EEeecCchhhHHhhhhcccCC-------CCcCEEEEecCCCcccccCccccccCCCCCCCCCcceeecCCCCCCcccccc
Q 045021          315 LKIERNMEIWKSMIERGFHKF-------SSLRHLTIEGCDDDMVSFPPEDRRLGTTLPLPASLASLTIGDFPNLERLSSS  387 (461)
Q Consensus       315 L~l~~~~~l~~~~~~~~~~~l-------~~L~~L~l~~~~~~~~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~  387 (461)
                      |++++|. ++ ..+...+...       ++|++|++++|  .+..++.. +.    ...+++|+.|++++ +.+..+|..
T Consensus       462 L~Ls~N~-l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N--~l~~lp~~-~~----~~~l~~L~~L~Ls~-N~l~~ip~~  531 (636)
T 4eco_A          462 INLMGNM-LT-EIPKNSLKDENENFKNTYLLTSIDLRFN--KLTKLSDD-FR----ATTLPYLVGIDLSY-NSFSKFPTQ  531 (636)
T ss_dssp             EECCSSC-CS-BCCSSSSEETTEECTTGGGCCEEECCSS--CCCBCCGG-GS----TTTCTTCCEEECCS-SCCSSCCCG
T ss_pred             EECCCCC-CC-CcCHHHhccccccccccCCccEEECcCC--cCCccChh-hh----hccCCCcCEEECCC-CCCCCcChh
Confidence            9999998 33 3333233333       39999999998  77788876 30    01578999999999 477779988


Q ss_pred             hhhccCCcEEEecCCC-----C-CcccCCC-CCcccccEeeccCCchhHHhhcccCccccccccccceEEEcccEEe
Q 045021          388 IVDLQNLKYLKLYDCP-----K-LKYFSEK-GLPSSLLRLYIDECPLIEEKCRKDGEQYWDLLTHIPRVRIHLPVVF  457 (461)
Q Consensus       388 ~~~~~~L~~L~l~~C~-----~-l~~~~~~-~~~~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  457 (461)
                      +..+++|+.|++++++     + ...+|.. .-+++|++|++++|.. .. ..   . .+.  ..+..+++.+|.+.
T Consensus       532 ~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~-ip---~-~~~--~~L~~L~Ls~N~l~  600 (636)
T 4eco_A          532 PLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RK-VN---E-KIT--PNISVLDIKDNPNI  600 (636)
T ss_dssp             GGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CB-CC---S-CCC--TTCCEEECCSCTTC
T ss_pred             hhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-Cc-cC---H-hHh--CcCCEEECcCCCCc
Confidence            9999999999996532     2 3344442 2268999999999975 21 11   1 122  67888888888543

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.96  E-value=1.3e-28  Score=257.78  Aligned_cols=340  Identities=16%  Similarity=0.200  Sum_probs=260.6

Q ss_pred             ccccCCCCCCcCEEEecCCcCccc------------------ccC-CC--CCCCccEEEEeecCCccccCcccccCCCCc
Q 045021           45 LPQSSLSLSSLREIEICRCHSLVS------------------FPE-VA--LPSKLKKIEIRECDALKSLPEAWMCGTNSS  103 (461)
Q Consensus        45 l~~~~~~l~~L~~L~l~~~~~l~~------------------~~~-~~--~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~  103 (461)
                      +|..++++++|++|+|++|. +..                  +|. ++  .+++|++|++++|.....+|..+...  ++
T Consensus       440 IP~~l~~L~~L~~L~Ls~N~-Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L--~~  516 (876)
T 4ecn_A          440 ISKAIQRLTKLQIIYFANSP-FTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDL--PE  516 (876)
T ss_dssp             ECGGGGGCTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGC--SS
T ss_pred             hhHHHhcCCCCCEEECcCCc-CCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCC--CC
Confidence            77788899999999999974 555                  777 66  89999999999988777888877776  89


Q ss_pred             ccEEEeeCCCCCcc--ccc--------cCCCCCccEEecccCCCceEeccCC--CcccccccccccCccEEEEecCCCCe
Q 045021          104 LEILKIWSCHSLPY--IAR--------VQLPPSLKRLDISHCDNIRTLTVED--GIQSSSRRYTSYLLEKLEIWDCPSLT  171 (461)
Q Consensus       104 L~~L~l~~~~~l~~--~~~--------~~~~~~L~~L~l~~~~~~~~l~~~~--~~~~~~~~~~~~~L~~L~l~~~~~l~  171 (461)
                      |+.|+++++..++.  +|.        ...+++|++|+++++. +..+|  .  .+..      +++|+.|++++ +.++
T Consensus       517 L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~-L~~ip--~~~~l~~------L~~L~~L~Ls~-N~l~  586 (876)
T 4ecn_A          517 LQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN-LEEFP--ASASLQK------MVKLGLLDCVH-NKVR  586 (876)
T ss_dssp             CCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSC-CCBCC--CHHHHTT------CTTCCEEECTT-SCCC
T ss_pred             CCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCc-CCccC--Chhhhhc------CCCCCEEECCC-CCcc
Confidence            99999998754554  432        2455699999999976 44777  6  5655      67899999998 6666


Q ss_pred             ecccCCCCcchhhhcccCCCCCCccEEEEecCCchhhhHHhhcCCCc-cceeeccccccceecccccCCCCC--ccEEEe
Q 045021          172 CIFSKNELPATLESLEVGNQPPSLKSLNVWSCSKLESIAERLDNNTS-LEMISILWCENLKFLPSGLHNLRQ--LQEIQL  248 (461)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~-L~~L~l~~~~~~~~~~~~~~~l~~--L~~L~l  248 (461)
                      . +|  .+...          ++|+.|++.++. +..++..+..+++ |++|++++|. +..+|..+..++.  |+.|++
T Consensus       587 ~-lp--~~~~L----------~~L~~L~Ls~N~-l~~lp~~l~~l~~~L~~L~Ls~N~-L~~lp~~~~~~~~~~L~~L~L  651 (876)
T 4ecn_A          587 H-LE--AFGTN----------VKLTDLKLDYNQ-IEEIPEDFCAFTDQVEGLGFSHNK-LKYIPNIFNAKSVYVMGSVDF  651 (876)
T ss_dssp             B-CC--CCCTT----------SEESEEECCSSC-CSCCCTTSCEECTTCCEEECCSSC-CCSCCSCCCTTCSSCEEEEEC
T ss_pred             c-ch--hhcCC----------CcceEEECcCCc-cccchHHHhhccccCCEEECcCCC-CCcCchhhhccccCCCCEEEC
Confidence            5 55  33222          679999999864 4477777888888 9999999874 5577877776654  999999


Q ss_pred             cCCCCCccCCCC-----CCCCCCcceEeeccCcccccccccc-CCCCCccEEEecc-cCCCcCCCCC---------CCCc
Q 045021          249 WGCENLVSFPEG-----GLPCAKLSKLGIYRCERLEALPKGL-HNLKSLKKLRIGG-KLPSLEEDGL---------PTNL  312 (461)
Q Consensus       249 ~~~~~l~~l~~~-----~~~~~~L~~L~l~~c~~~~~~~~~~-~~l~~L~~L~l~~-~~~~l~~~~~---------~~~L  312 (461)
                      ++|.....++..     ....++|+.|++++|. ++.+|..+ ..+++|+.|++++ .+..++....         +++|
T Consensus       652 s~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~-L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L  730 (876)
T 4ecn_A          652 SYNKIGSEGRNISCSMDDYKGINASTVTLSYNE-IQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLL  730 (876)
T ss_dssp             CSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSC-CCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGC
T ss_pred             cCCcCCCccccchhhhccccCCCcCEEEccCCc-CCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCc
Confidence            998544333321     1234589999999964 55777644 4899999999999 7777776422         1289


Q ss_pred             ceEEeecCchhhHHhhhhccc--CCCCcCEEEEecCCCcccccCccccccCCCCCCCCCcceeecCC------CCCCccc
Q 045021          313 HFLKIERNMEIWKSMIERGFH--KFSSLRHLTIEGCDDDMVSFPPEDRRLGTTLPLPASLASLTIGD------FPNLERL  384 (461)
Q Consensus       313 ~~L~l~~~~~l~~~~~~~~~~--~l~~L~~L~l~~~~~~~~~i~~~~~~~~~~~~~~~~L~~L~l~~------~~~l~~i  384 (461)
                      ++|++++|. +. ..+. .+.  .+++|+.|++++|  .+..+|.. ++      .+++|+.|++++      +.-...+
T Consensus       731 ~~L~Ls~N~-L~-~lp~-~l~~~~l~~L~~L~Ls~N--~L~~lp~~-l~------~L~~L~~L~Ls~N~~ls~N~l~~~i  798 (876)
T 4ecn_A          731 TTIDLRFNK-LT-SLSD-DFRATTLPYLSNMDVSYN--CFSSFPTQ-PL------NSSQLKAFGIRHQRDAEGNRILRQW  798 (876)
T ss_dssp             CEEECCSSC-CC-CCCG-GGSTTTCTTCCEEECCSS--CCSSCCCG-GG------GCTTCCEEECCCCBCTTCCBCCCCC
T ss_pred             cEEECCCCC-Cc-cchH-HhhhccCCCcCEEEeCCC--CCCccchh-hh------cCCCCCEEECCCCCCcccccccccC
Confidence            999999997 44 2332 344  8999999999998  77778776 43      678999999986      3334677


Q ss_pred             ccchhhccCCcEEEecCCCCCcccCCCCCcccccEeeccCCch
Q 045021          385 SSSIVDLQNLKYLKLYDCPKLKYFSEKGLPSSLLRLYIDECPL  427 (461)
Q Consensus       385 ~~~~~~~~~L~~L~l~~C~~l~~~~~~~~~~~L~~L~i~~c~~  427 (461)
                      |..+..+++|+.|++++ +.++.+|.. +.++|+.|++++|+.
T Consensus       799 p~~l~~L~~L~~L~Ls~-N~L~~Ip~~-l~~~L~~LdLs~N~l  839 (876)
T 4ecn_A          799 PTGITTCPSLIQLQIGS-NDIRKVDEK-LTPQLYILDIADNPN  839 (876)
T ss_dssp             CTTGGGCSSCCEEECCS-SCCCBCCSC-CCSSSCEEECCSCTT
T ss_pred             hHHHhcCCCCCEEECCC-CCCCccCHh-hcCCCCEEECCCCCC
Confidence            88899999999999999 677888885 558999999999975

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.96  E-value=5.3e-28  Score=256.69  Aligned_cols=251  Identities=15%  Similarity=0.143  Sum_probs=151.5

Q ss_pred             CCccEEEEecCCchhhhHHhhcCCCccceeeccccccceecccccCCCCCccEEEecCCCCCccC-CCCCCCCCCcceEe
Q 045021          193 PSLKSLNVWSCSKLESIAERLDNNTSLEMISILWCENLKFLPSGLHNLRQLQEIQLWGCENLVSF-PEGGLPCAKLSKLG  271 (461)
Q Consensus       193 ~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l-~~~~~~~~~L~~L~  271 (461)
                      ++|+.|++.++......+..+..+++|++|++++|......+..+..+++|++|++++|. +..+ +.....+++|++|+
T Consensus       266 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~  344 (844)
T 3j0a_A          266 SSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNL-LGELYSSNFYGLPKVAYID  344 (844)
T ss_dssp             SCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCC-CSCCCSCSCSSCTTCCEEE
T ss_pred             CCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCC-CCccCHHHhcCCCCCCEEE
Confidence            467777777654333334466777778888887764444445667777788888887773 3333 44555667788888


Q ss_pred             eccCcccccc-ccccCCCCCccEEEecc-cCCCcCCCCCCCCcceEEeecCchh-------------------hHHhhhh
Q 045021          272 IYRCERLEAL-PKGLHNLKSLKKLRIGG-KLPSLEEDGLPTNLHFLKIERNMEI-------------------WKSMIER  330 (461)
Q Consensus       272 l~~c~~~~~~-~~~~~~l~~L~~L~l~~-~~~~l~~~~~~~~L~~L~l~~~~~l-------------------~~~~~~~  330 (461)
                      +++|. +..+ +..+..+++|++|++++ .+..++.   +++|+.|++++|...                   .......
T Consensus       345 L~~N~-i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~---~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~  420 (844)
T 3j0a_A          345 LQKNH-IAIIQDQTFKFLEKLQTLDLRDNALTTIHF---IPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILY  420 (844)
T ss_dssp             CCSCC-CCCCCSSCSCSCCCCCEEEEETCCSCCCSS---CCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTTHH
T ss_pred             CCCCC-CCccChhhhcCCCCCCEEECCCCCCCcccC---CCCcchhccCCCCcccccccccccceeecccCccccCchhh
Confidence            87763 4444 33567777777777777 5444332   334444444433211                   0000011


Q ss_pred             cccCCCCcCEEEEecCCCcccccCccc-cc-----------------------cCCCCCCCCCcceeecCCCCCCcccc-
Q 045021          331 GFHKFSSLRHLTIEGCDDDMVSFPPED-RR-----------------------LGTTLPLPASLASLTIGDFPNLERLS-  385 (461)
Q Consensus       331 ~~~~l~~L~~L~l~~~~~~~~~i~~~~-~~-----------------------~~~~~~~~~~L~~L~l~~~~~l~~i~-  385 (461)
                      .+..+++|+.|++++|  .+..++... ..                       .......+++|+.|+++++ .++.++ 
T Consensus       421 ~~~~l~~L~~L~Ls~N--~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~  497 (844)
T 3j0a_A          421 FLLRVPHLQILILNQN--RFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHN-YLNSLPP  497 (844)
T ss_dssp             HHTTCTTCCEEEEESC--CCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHH-HHTTCCT
T ss_pred             hhhcCCccceeeCCCC--cccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCC-cccccCh
Confidence            1335666666666665  333221110 00                       0001124567788888874 565555 


Q ss_pred             cchhhccCCcEEEecCCCCCcccCCCCCcccccEeeccCCchhHHhhcccCccccccccccceEEEcccEEecCC
Q 045021          386 SSIVDLQNLKYLKLYDCPKLKYFSEKGLPSSLLRLYIDECPLIEEKCRKDGEQYWDLLTHIPRVRIHLPVVFDDS  460 (461)
Q Consensus       386 ~~~~~~~~L~~L~l~~C~~l~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  460 (461)
                      ..+..+++|+.|++++ ++++.++...++++|+.|++++|....        .....+..+..+++.+|+..|+|
T Consensus       498 ~~~~~l~~L~~L~Ls~-N~l~~l~~~~~~~~L~~L~Ls~N~l~~--------~~~~~~~~L~~l~l~~Np~~C~c  563 (844)
T 3j0a_A          498 GVFSHLTALRGLSLNS-NRLTVLSHNDLPANLEILDISRNQLLA--------PNPDVFVSLSVLDITHNKFICEC  563 (844)
T ss_dssp             TSSSSCCSCSEEEEES-CCCSSCCCCCCCSCCCEEEEEEECCCC--------CCSCCCSSCCEEEEEEECCCCSS
T ss_pred             hHccchhhhheeECCC-CCCCccChhhhhccccEEECCCCcCCC--------CChhHhCCcCEEEecCCCccccc
Confidence            4567889999999999 789988887777899999999874321        11122457888999999888765

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.96  E-value=7e-28  Score=247.23  Aligned_cols=219  Identities=18%  Similarity=0.087  Sum_probs=158.0

Q ss_pred             CccEEEEecCCchhhhHHhhcCCCccceeecccccccee---cccccCCCCCccEEEecCCCCCccCCCCCCCCCCcceE
Q 045021          194 SLKSLNVWSCSKLESIAERLDNNTSLEMISILWCENLKF---LPSGLHNLRQLQEIQLWGCENLVSFPEGGLPCAKLSKL  270 (461)
Q Consensus       194 ~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~---~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L  270 (461)
                      +|+.|++.++......  .+..+++|++|++++|. +..   .+..+..+++|++|++++| .+..++.....+++|++|
T Consensus       329 ~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~-l~~~~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L  404 (606)
T 3vq2_A          329 FLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNA-LSFSGCCSYSDLGTNSLRHLDLSFN-GAIIMSANFMGLEELQHL  404 (606)
T ss_dssp             SCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSC-EEEEEECCHHHHCCSCCCEEECCSC-SEEEECCCCTTCTTCCEE
T ss_pred             ccceeeccCCcCccch--hhccCCCCCEEECcCCc-cCCCcchhhhhccCCcccEeECCCC-ccccchhhccCCCCCCee
Confidence            3444444443222222  34456666667666653 222   2566677888888888887 456666666778899999


Q ss_pred             eeccCccccccc-cccCCCCCccEEEecc-cCCCcC-C-CCCCCCcceEEeecCchhhHHhhhhcccCCCCcCEEEEecC
Q 045021          271 GIYRCERLEALP-KGLHNLKSLKKLRIGG-KLPSLE-E-DGLPTNLHFLKIERNMEIWKSMIERGFHKFSSLRHLTIEGC  346 (461)
Q Consensus       271 ~l~~c~~~~~~~-~~~~~l~~L~~L~l~~-~~~~l~-~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~  346 (461)
                      ++++|......+ ..+..+++|++|++++ .+.... . ...+++|++|++++|. +.+......+..+++|++|++++|
T Consensus       405 ~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~Ls~n  483 (606)
T 3vq2_A          405 DFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNS-FKDNTLSNVFANTTNLTFLDLSKC  483 (606)
T ss_dssp             ECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCE-EGGGEECSCCTTCTTCCEEECTTS
T ss_pred             ECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCc-CCCcchHHhhccCCCCCEEECCCC
Confidence            999976555555 4788999999999999 554432 2 2567899999999997 333223345788999999999998


Q ss_pred             CCcccccCccccccCCCCCCCCCcceeecCCCCCCccc-ccchhhccCCcEEEecCCCCCcccCCC--CCcccccEeecc
Q 045021          347 DDDMVSFPPEDRRLGTTLPLPASLASLTIGDFPNLERL-SSSIVDLQNLKYLKLYDCPKLKYFSEK--GLPSSLLRLYID  423 (461)
Q Consensus       347 ~~~~~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i-~~~~~~~~~L~~L~l~~C~~l~~~~~~--~~~~~L~~L~i~  423 (461)
                        .+..++...+      ..+++|++|+++++ .+..+ |..+..+++|++|++++ ++++.+|..  .++++|++|+++
T Consensus       484 --~l~~~~~~~~------~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~l~~-N~l~~~p~~~~~l~~~L~~l~l~  553 (606)
T 3vq2_A          484 --QLEQISWGVF------DTLHRLQLLNMSHN-NLLFLDSSHYNQLYSLSTLDCSF-NRIETSKGILQHFPKSLAFFNLT  553 (606)
T ss_dssp             --CCCEECTTTT------TTCTTCCEEECCSS-CCSCEEGGGTTTCTTCCEEECTT-SCCCCEESCGGGSCTTCCEEECC
T ss_pred             --cCCccChhhh------cccccCCEEECCCC-cCCCcCHHHccCCCcCCEEECCC-CcCcccCHhHhhhcccCcEEEcc
Confidence              7766655434      36789999999996 56554 68889999999999999 679998875  223579999999


Q ss_pred             CCch
Q 045021          424 ECPL  427 (461)
Q Consensus       424 ~c~~  427 (461)
                      +||.
T Consensus       554 ~N~~  557 (606)
T 3vq2_A          554 NNSV  557 (606)
T ss_dssp             SCCC
T ss_pred             CCCc
Confidence            8764

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.96  E-value=1.1e-28  Score=250.37  Aligned_cols=82  Identities=24%  Similarity=0.273  Sum_probs=48.6

Q ss_pred             CCcceeecCCCCCCcccccchhhccCCcEEEecCCCCCcccCCCCCcccccEeeccCCchhHHhhcccCccccccccccc
Q 045021          368 ASLASLTIGDFPNLERLSSSIVDLQNLKYLKLYDCPKLKYFSEKGLPSSLLRLYIDECPLIEEKCRKDGEQYWDLLTHIP  447 (461)
Q Consensus       368 ~~L~~L~l~~~~~l~~i~~~~~~~~~L~~L~l~~C~~l~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~  447 (461)
                      ++|++|+++++ .++.++   ..+++|++|++++ ++++.+|.....++|++|++++|...     ....+.+..+.++.
T Consensus       431 ~~L~~L~Ls~N-~l~~~~---~~l~~L~~L~Ls~-N~l~~ip~~~~l~~L~~L~Ls~N~l~-----~~~~~~~~~l~~L~  500 (549)
T 2z81_A          431 QTLEVLDVSNN-NLDSFS---LFLPRLQELYISR-NKLKTLPDASLFPVLLVMKISRNQLK-----SVPDGIFDRLTSLQ  500 (549)
T ss_dssp             TTCSEEECCSS-CCSCCC---CCCTTCCEEECCS-SCCSSCCCGGGCTTCCEEECCSSCCC-----CCCTTGGGGCTTCC
T ss_pred             CCceEEECCCC-Chhhhc---ccCChhcEEECCC-CccCcCCCcccCccCCEEecCCCccC-----CcCHHHHhcCcccC
Confidence            34555555552 333332   3567777777777 56777766444677777777776321     11222345566777


Q ss_pred             eEEEcccEEecC
Q 045021          448 RVRIHLPVVFDD  459 (461)
Q Consensus       448 ~~~~~~~~~~~~  459 (461)
                      .+++.+|.+.++
T Consensus       501 ~L~l~~N~~~~~  512 (549)
T 2z81_A          501 KIWLHTNPWDCS  512 (549)
T ss_dssp             EEECCSSCBCCC
T ss_pred             EEEecCCCccCC
Confidence            777777776654

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.96  E-value=2.6e-26  Score=238.70  Aligned_cols=105  Identities=15%  Similarity=0.072  Sum_probs=50.5

Q ss_pred             CccEEEEecCCchhhhHHhhcCCCccceeeccccccceecccccCCCCCccEEEecCCCCCc-----cCCC----CCCCC
Q 045021          194 SLKSLNVWSCSKLESIAERLDNNTSLEMISILWCENLKFLPSGLHNLRQLQEIQLWGCENLV-----SFPE----GGLPC  264 (461)
Q Consensus       194 ~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~-----~l~~----~~~~~  264 (461)
                      +|+.|+++++......+..+..+++|++|++++|......+..+..+++|+.|+++++....     .++.    ....+
T Consensus       249 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l  328 (680)
T 1ziw_A          249 NLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWL  328 (680)
T ss_dssp             CCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTC
T ss_pred             CCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccC
Confidence            36666666643322233455666666666666654334444555556666666665432111     1111    22234


Q ss_pred             CCcceEeeccCccccccccccCCCCCccEEEecc
Q 045021          265 AKLSKLGIYRCERLEALPKGLHNLKSLKKLRIGG  298 (461)
Q Consensus       265 ~~L~~L~l~~c~~~~~~~~~~~~l~~L~~L~l~~  298 (461)
                      ++|++|++++|......+..+..+++|++|++++
T Consensus       329 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~  362 (680)
T 1ziw_A          329 KCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSN  362 (680)
T ss_dssp             TTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTT
T ss_pred             CCCCEEECCCCccCCCChhHhccccCCcEEECCC
Confidence            4555555555433222233445555555555543

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.95  E-value=3e-26  Score=238.29  Aligned_cols=123  Identities=19%  Similarity=0.161  Sum_probs=77.7

Q ss_pred             ccCCCCccccccch--h----hhhhhhhhhhcCCccEEEecCCcCCccccc-cCCCCCCcCEEEecCCcCcccccC--CC
Q 045021            3 IDSCPKLQSLVAEE--E----KDQQQQLCELSCRLEYLILRYCKGLVKLPQ-SSLSLSSLREIEICRCHSLVSFPE--VA   73 (461)
Q Consensus         3 ~~~c~~l~~l~~~~--~----~~~l~~l~~~~~~L~~L~l~~~~~l~~l~~-~~~~l~~L~~L~l~~~~~l~~~~~--~~   73 (461)
                      +.+|++|++|..+.  +    ...+..+    ++|++|+++++ .+..+|. .|+++++|++|++++| .+..+++  ++
T Consensus        45 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l----~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~  118 (680)
T 1ziw_A           45 FTRYSQLTSLDVGFNTISKLEPELCQKL----PMLKVLNLQHN-ELSQLSDKTFAFCTNLTELHLMSN-SIQKIKNNPFV  118 (680)
T ss_dssp             GGGGTTCSEEECCSSCCCCCCTTHHHHC----TTCCEEECCSS-CCCCCCTTTTTTCTTCSEEECCSS-CCCCCCSCTTT
T ss_pred             HhCCCcCcEEECCCCccCccCHHHHhcc----cCcCEEECCCC-ccCccChhhhccCCCCCEEECCCC-ccCccChhHcc
Confidence            45566666666521  0    1446667    88899999884 4566665 5888888888888887 4566654  77


Q ss_pred             CCCCccEEEEeecCCccccC-cccccCCCCcccEEEeeCCCCCcccccc----CCCCCccEEecccC
Q 045021           74 LPSKLKKIEIRECDALKSLP-EAWMCGTNSSLEILKIWSCHSLPYIARV----QLPPSLKRLDISHC  135 (461)
Q Consensus        74 ~l~~L~~L~l~~~~~l~~~~-~~~~~~~~~~L~~L~l~~~~~l~~~~~~----~~~~~L~~L~l~~~  135 (461)
                      .+++|++|+++++. +...+ ..+..  +++|++|+++++ .++.++..    ..+++|++|+++++
T Consensus       119 ~l~~L~~L~Ls~n~-l~~~~~~~~~~--l~~L~~L~L~~n-~l~~~~~~~~~~~~~~~L~~L~L~~n  181 (680)
T 1ziw_A          119 KQKNLITLDLSHNG-LSSTKLGTQVQ--LENLQELLLSNN-KIQALKSEELDIFANSSLKKLELSSN  181 (680)
T ss_dssp             TCTTCCEEECCSSC-CSCCCCCSSSC--CTTCCEEECCSS-CCCCBCHHHHGGGTTCEESEEECTTC
T ss_pred             ccCCCCEEECCCCc-ccccCchhhcc--cccCCEEEccCC-cccccCHHHhhccccccccEEECCCC
Confidence            78888888888865 44433 33333  377777777764 33333221    23356666666654

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.95  E-value=4.9e-27  Score=245.90  Aligned_cols=349  Identities=11%  Similarity=0.125  Sum_probs=243.0

Q ss_pred             ccC-CCCCCCccEEEEeecCCccc------------------cCcccc--cCCCCcccEEEeeCCCCCcccccc-CCCCC
Q 045021           69 FPE-VALPSKLKKIEIRECDALKS------------------LPEAWM--CGTNSSLEILKIWSCHSLPYIARV-QLPPS  126 (461)
Q Consensus        69 ~~~-~~~l~~L~~L~l~~~~~l~~------------------~~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~-~~~~~  126 (461)
                      +|. ++.+++|++|+++++. +..                  +|..+.  ..  ++|+.|++++|.....+|.. ..+++
T Consensus       440 IP~~l~~L~~L~~L~Ls~N~-Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L--~~L~~L~Ls~N~l~~~iP~~l~~L~~  516 (876)
T 4ecn_A          440 ISKAIQRLTKLQIIYFANSP-FTYDNIAVDWEDANSDYAKQYENEELSWSNL--KDLTDVELYNCPNMTQLPDFLYDLPE  516 (876)
T ss_dssp             ECGGGGGCTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHTTSCCCGGGC--TTCCEEEEESCTTCCSCCGGGGGCSS
T ss_pred             hhHHHhcCCCCCEEECcCCc-CCCCcccccccccccccccccCChhhhhccC--CCCCEEECcCCCCCccChHHHhCCCC
Confidence            666 7788999999999976 665                  787765  55  88999999988766666654 77889


Q ss_pred             ccEEecccCCCce--EeccCCCccccc-ccccccCccEEEEecCCCCeecccC-CCCcchhhhcccCCCCCCccEEEEec
Q 045021          127 LKRLDISHCDNIR--TLTVEDGIQSSS-RRYTSYLLEKLEIWDCPSLTCIFSK-NELPATLESLEVGNQPPSLKSLNVWS  202 (461)
Q Consensus       127 L~~L~l~~~~~~~--~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~L~~L~l~~  202 (461)
                      |+.|+++++..+.  .+|  ..+.... ....+++|+.|++++ +.+.. +|. ..+..          +++|+.|++.+
T Consensus       517 L~~L~Ls~N~~lsg~~iP--~~i~~L~~~~~~l~~L~~L~Ls~-N~L~~-ip~~~~l~~----------L~~L~~L~Ls~  582 (876)
T 4ecn_A          517 LQSLNIACNRGISAAQLK--ADWTRLADDEDTGPKIQIFYMGY-NNLEE-FPASASLQK----------MVKLGLLDCVH  582 (876)
T ss_dssp             CCEEECTTCTTSCHHHHH--HHHHHHHHCTTTTTTCCEEECCS-SCCCB-CCCHHHHTT----------CTTCCEEECTT
T ss_pred             CCEEECcCCCCcccccch--HHHHhhhhcccccCCccEEEeeC-CcCCc-cCChhhhhc----------CCCCCEEECCC
Confidence            9999999876343  366  5554421 222345899999998 66665 443 11111          25799999988


Q ss_pred             CCchhhhHHhhcCCCccceeeccccccceecccccCCCCC-ccEEEecCCCCCccCCCCCCCC--CCcceEeeccCcccc
Q 045021          203 CSKLESIAERLDNNTSLEMISILWCENLKFLPSGLHNLRQ-LQEIQLWGCENLVSFPEGGLPC--AKLSKLGIYRCERLE  279 (461)
Q Consensus       203 ~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~-L~~L~l~~~~~l~~l~~~~~~~--~~L~~L~l~~c~~~~  279 (461)
                      +. +..+| .+..+++|+.|++++|. +..+|..+..+++ |+.|++++|. +..+|......  ++|+.|++++|....
T Consensus       583 N~-l~~lp-~~~~L~~L~~L~Ls~N~-l~~lp~~l~~l~~~L~~L~Ls~N~-L~~lp~~~~~~~~~~L~~L~Ls~N~l~g  658 (876)
T 4ecn_A          583 NK-VRHLE-AFGTNVKLTDLKLDYNQ-IEEIPEDFCAFTDQVEGLGFSHNK-LKYIPNIFNAKSVYVMGSVDFSYNKIGS  658 (876)
T ss_dssp             SC-CCBCC-CCCTTSEESEEECCSSC-CSCCCTTSCEECTTCCEEECCSSC-CCSCCSCCCTTCSSCEEEEECCSSCTTT
T ss_pred             CC-cccch-hhcCCCcceEEECcCCc-cccchHHHhhccccCCEEECcCCC-CCcCchhhhccccCCCCEEECcCCcCCC
Confidence            64 44667 78888999999999874 4478888888888 9999999884 55777644443  349999999876444


Q ss_pred             cccc---ccC--CCCCccEEEecc-cCCCcCCC--CCCCCcceEEeecCchhhHHhhhhccc-------CCCCcCEEEEe
Q 045021          280 ALPK---GLH--NLKSLKKLRIGG-KLPSLEED--GLPTNLHFLKIERNMEIWKSMIERGFH-------KFSSLRHLTIE  344 (461)
Q Consensus       280 ~~~~---~~~--~l~~L~~L~l~~-~~~~l~~~--~~~~~L~~L~l~~~~~l~~~~~~~~~~-------~l~~L~~L~l~  344 (461)
                      .+|.   .+.  .+++|++|++++ .+..++..  ..+++|+.|++++|. +. ..+...+.       ++++|++|+++
T Consensus       659 ~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~-L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls  736 (876)
T 4ecn_A          659 EGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNL-MT-SIPENSLKPKDGNYKNTYLLTTIDLR  736 (876)
T ss_dssp             TSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCC-CS-CCCTTSSSCTTSCCTTGGGCCEEECC
T ss_pred             ccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCc-CC-ccChHHhccccccccccCCccEEECC
Confidence            3332   222  345899999998 77777654  356789999999886 33 23332232       23389999999


Q ss_pred             cCCCcccccCccccccCCCCCCCCCcceeecCCCCCCcccccchhhccCCcEEEecCCC-----C-CcccCCC-CCcccc
Q 045021          345 GCDDDMVSFPPEDRRLGTTLPLPASLASLTIGDFPNLERLSSSIVDLQNLKYLKLYDCP-----K-LKYFSEK-GLPSSL  417 (461)
Q Consensus       345 ~~~~~~~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~L~~L~l~~C~-----~-l~~~~~~-~~~~~L  417 (461)
                      +|  .+..+|.. +.    ...+++|+.|++++ +.+..+|..+..+++|+.|++++++     + ...+|.. .-+++|
T Consensus       737 ~N--~L~~lp~~-l~----~~~l~~L~~L~Ls~-N~L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L  808 (876)
T 4ecn_A          737 FN--KLTSLSDD-FR----ATTLPYLSNMDVSY-NCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSL  808 (876)
T ss_dssp             SS--CCCCCCGG-GS----TTTCTTCCEEECCS-SCCSSCCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSC
T ss_pred             CC--CCccchHH-hh----hccCCCcCEEEeCC-CCCCccchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCC
Confidence            98  77777775 30    01567999999999 4777788888899999999997632     2 3334432 226899


Q ss_pred             cEeeccCCchhHHhhcccCccccccccccceEEEcccEE
Q 045021          418 LRLYIDECPLIEEKCRKDGEQYWDLLTHIPRVRIHLPVV  456 (461)
Q Consensus       418 ~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  456 (461)
                      ++|++++|.. . .+.   . .+.  .++..+++.+|.+
T Consensus       809 ~~L~Ls~N~L-~-~Ip---~-~l~--~~L~~LdLs~N~l  839 (876)
T 4ecn_A          809 IQLQIGSNDI-R-KVD---E-KLT--PQLYILDIADNPN  839 (876)
T ss_dssp             CEEECCSSCC-C-BCC---S-CCC--SSSCEEECCSCTT
T ss_pred             CEEECCCCCC-C-ccC---H-hhc--CCCCEEECCCCCC
Confidence            9999999865 2 111   1 122  4788888888765

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.95  E-value=1.6e-26  Score=232.69  Aligned_cols=361  Identities=18%  Similarity=0.138  Sum_probs=220.5

Q ss_pred             CCccEEEecCCcCCcccc-ccCCCCCCcCEEEecCCcCcccc-cC-CCCCCCccEEEEeecCCccccCcccccCCCCccc
Q 045021           29 CRLEYLILRYCKGLVKLP-QSSLSLSSLREIEICRCHSLVSF-PE-VALPSKLKKIEIRECDALKSLPEAWMCGTNSSLE  105 (461)
Q Consensus        29 ~~L~~L~l~~~~~l~~l~-~~~~~l~~L~~L~l~~~~~l~~~-~~-~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~  105 (461)
                      ++|++|+++++. +..++ ..+..+++|++|++++| .+..+ |. ++.+++|++|+++++. ++.+|..  .  +++|+
T Consensus        21 ~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~--~--l~~L~   93 (520)
T 2z7x_B           21 QKTTILNISQNY-ISELWTSDILSLSKLRILIISHN-RIQYLDISVFKFNQELEYLDLSHNK-LVKISCH--P--TVNLK   93 (520)
T ss_dssp             TTCSEEECCSSC-CCCCCHHHHTTCTTCCEEECCSS-CCCEEEGGGGTTCTTCCEEECCSSC-CCEEECC--C--CCCCS
T ss_pred             ccccEEECCCCc-ccccChhhccccccccEEecCCC-ccCCcChHHhhcccCCCEEecCCCc-eeecCcc--c--cCCcc
Confidence            899999999965 56554 67999999999999998 46656 43 8899999999999976 8888877  3  49999


Q ss_pred             EEEeeCCCCCcc--cc-ccCCCCCccEEecccCCCceEeccCCCcccccccccccCc--cEEEEecCCCC--eecccCCC
Q 045021          106 ILKIWSCHSLPY--IA-RVQLPPSLKRLDISHCDNIRTLTVEDGIQSSSRRYTSYLL--EKLEIWDCPSL--TCIFSKNE  178 (461)
Q Consensus       106 ~L~l~~~~~l~~--~~-~~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~~~~L--~~L~l~~~~~l--~~~~~~~~  178 (461)
                      +|+++++ .++.  ++ ..+.+++|++|+++++. +..    ..+..      +++|  +.|++++ +.+  ....+.. 
T Consensus        94 ~L~L~~N-~l~~~~~p~~~~~l~~L~~L~L~~n~-l~~----~~~~~------l~~L~L~~L~l~~-n~l~~~~~~~~~-  159 (520)
T 2z7x_B           94 HLDLSFN-AFDALPICKEFGNMSQLKFLGLSTTH-LEK----SSVLP------IAHLNISKVLLVL-GETYGEKEDPEG-  159 (520)
T ss_dssp             EEECCSS-CCSSCCCCGGGGGCTTCCEEEEEESS-CCG----GGGGG------GTTSCEEEEEEEE-CTTTTSSCCTTT-
T ss_pred             EEeccCC-ccccccchhhhccCCcceEEEecCcc-cch----hhccc------cccceeeEEEeec-cccccccccccc-
Confidence            9999996 4554  32 34788999999999975 222    12222      3456  9999998 454  2212221 


Q ss_pred             Ccchh-hhc---------------ccCCCCCCccEEEEecCC-------chhhhHHhhcCC-------------------
Q 045021          179 LPATL-ESL---------------EVGNQPPSLKSLNVWSCS-------KLESIAERLDNN-------------------  216 (461)
Q Consensus       179 ~~~~~-~~~---------------~~~~~~~~L~~L~l~~~~-------~l~~~~~~~~~l-------------------  216 (461)
                      +...- +.+               .....+++|+.+++.++.       ....++ .+..+                   
T Consensus       160 l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~  238 (520)
T 2z7x_B          160 LQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIETTWNSFI  238 (520)
T ss_dssp             TTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEEEEHHHHH
T ss_pred             ccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhccccccccCHHHHH
Confidence            11100 000               001123456666665542       111111 22333                   


Q ss_pred             --------Cccceeeccccccceeccccc-----CCCCCccEEEecCCCCCccCCC------------------------
Q 045021          217 --------TSLEMISILWCENLKFLPSGL-----HNLRQLQEIQLWGCENLVSFPE------------------------  259 (461)
Q Consensus       217 --------~~L~~L~l~~~~~~~~~~~~~-----~~l~~L~~L~l~~~~~l~~l~~------------------------  259 (461)
                              ++|++|++++|...+.+|..+     +.+++|+.++++++..  .+|.                        
T Consensus       239 ~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~  316 (520)
T 2z7x_B          239 RILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVH  316 (520)
T ss_dssp             HHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCC
T ss_pred             HHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCcccc
Confidence                    356666666653333566655     6666666666655432  2221                        


Q ss_pred             C--CCCCCCcceEeeccCccccccccccCCCCCccEEEecc-cCCCcCC----CCCCCCcceEEeecCchhhHHhhhhcc
Q 045021          260 G--GLPCAKLSKLGIYRCERLEALPKGLHNLKSLKKLRIGG-KLPSLEE----DGLPTNLHFLKIERNMEIWKSMIERGF  332 (461)
Q Consensus       260 ~--~~~~~~L~~L~l~~c~~~~~~~~~~~~l~~L~~L~l~~-~~~~l~~----~~~~~~L~~L~l~~~~~l~~~~~~~~~  332 (461)
                      .  ...+++|++|++++|.....+|..+..+++|++|++++ .+..++.    ...+++|++|++++|. +....+...+
T Consensus       317 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~-l~~~l~~~~~  395 (520)
T 2z7x_B          317 MLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNS-VSYDEKKGDC  395 (520)
T ss_dssp             CCCCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSC-CBCCGGGCSC
T ss_pred             ccchhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCc-CCcccccchh
Confidence            0  13445677777776544444555666677777777766 5543322    2455667777777666 2222222235


Q ss_pred             cCCCCcCEEEEecCCCccc-ccCccccccCCCCCCCCCcceeecCCCCCCcccccchhhccCCcEEEecCCCCCcccCCC
Q 045021          333 HKFSSLRHLTIEGCDDDMV-SFPPEDRRLGTTLPLPASLASLTIGDFPNLERLSSSIVDLQNLKYLKLYDCPKLKYFSEK  411 (461)
Q Consensus       333 ~~l~~L~~L~l~~~~~~~~-~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~L~~L~l~~C~~l~~~~~~  411 (461)
                      ..+++|++|++++|  .+. .++..         .+++|+.|+++++ .++.+|..+..+++|++|++++ ++++.+|..
T Consensus       396 ~~l~~L~~L~Ls~N--~l~~~~~~~---------l~~~L~~L~Ls~N-~l~~ip~~~~~l~~L~~L~L~~-N~l~~l~~~  462 (520)
T 2z7x_B          396 SWTKSLLSLNMSSN--ILTDTIFRC---------LPPRIKVLDLHSN-KIKSIPKQVVKLEALQELNVAS-NQLKSVPDG  462 (520)
T ss_dssp             CCCTTCCEEECCSS--CCCGGGGGS---------CCTTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCS-SCCCCCCTT
T ss_pred             ccCccCCEEECcCC--CCCcchhhh---------hcccCCEEECCCC-cccccchhhhcCCCCCEEECCC-CcCCccCHH
Confidence            56667777777776  342 23332         3357788888774 6777776666777888888877 577777764


Q ss_pred             CC--cccccEeeccCCch
Q 045021          412 GL--PSSLLRLYIDECPL  427 (461)
Q Consensus       412 ~~--~~~L~~L~i~~c~~  427 (461)
                      .+  .++|++|++++|+.
T Consensus       463 ~~~~l~~L~~L~l~~N~~  480 (520)
T 2z7x_B          463 IFDRLTSLQKIWLHTNPW  480 (520)
T ss_dssp             TTTTCTTCCEEECCSSCB
T ss_pred             HhccCCcccEEECcCCCC
Confidence            22  56777888777653

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.95  E-value=4.1e-26  Score=232.37  Aligned_cols=389  Identities=19%  Similarity=0.210  Sum_probs=207.1

Q ss_pred             CCccEEEecCCcCCccc-cccCCCCCCcCEEEecCCcCcccccC--CCCCCCccEEEEeecCCccccCcccccCCCCccc
Q 045021           29 CRLEYLILRYCKGLVKL-PQSSLSLSSLREIEICRCHSLVSFPE--VALPSKLKKIEIRECDALKSLPEAWMCGTNSSLE  105 (461)
Q Consensus        29 ~~L~~L~l~~~~~l~~l-~~~~~~l~~L~~L~l~~~~~l~~~~~--~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~  105 (461)
                      +++++|+++++ .+..+ +..|.++++|++|++++| .+..+++  ++.+++|++|+++++. +..++...+.. +++|+
T Consensus        28 ~~l~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~n-~i~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~-l~~L~  103 (570)
T 2z63_A           28 FSTKNLDLSFN-PLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNP-IQSLALGAFSG-LSSLQ  103 (570)
T ss_dssp             SSCCEEECCSC-CCCEECTTTTTTCSSCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTCC-CCEECTTTTTT-CTTCC
T ss_pred             ccccEEEccCC-ccCccChhHhhCCCCceEEECCCC-cCCccCcccccCchhCCEEeCcCCc-CCccCHhhhcC-ccccc
Confidence            56777777763 34444 335667777777777776 3555543  5667777777777755 55554332222 36777


Q ss_pred             EEEeeCCCCCccccc--cCCCCCccEEecccCCCce-EeccCCCcccccccccccCccEEEEecCCCCeecccCCCCcch
Q 045021          106 ILKIWSCHSLPYIAR--VQLPPSLKRLDISHCDNIR-TLTVEDGIQSSSRRYTSYLLEKLEIWDCPSLTCIFSKNELPAT  182 (461)
Q Consensus       106 ~L~l~~~~~l~~~~~--~~~~~~L~~L~l~~~~~~~-~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~  182 (461)
                      +|+++++ .++.++.  ...+++|++|+++++.... .+|  ..+..      +++|+.|++++ +.++. .+...+...
T Consensus       104 ~L~L~~n-~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp--~~~~~------l~~L~~L~l~~-n~l~~-~~~~~~~~l  172 (570)
T 2z63_A          104 KLVAVET-NLASLENFPIGHLKTLKELNVAHNLIQSFKLP--EYFSN------LTNLEHLDLSS-NKIQS-IYCTDLRVL  172 (570)
T ss_dssp             EEECTTS-CCCCSTTCSCTTCTTCCEEECCSSCCCCCCCC--GGGGG------CTTCCEEECTT-SCCCE-ECGGGGHHH
T ss_pred             ccccccc-ccccCCCccccccccccEEecCCCccceecCh--hhhcc------cCCCCEEeCcC-Cccce-ecHHHccch
Confidence            7777664 4444443  3566677777777654221 234  44444      45666666666 44444 221111000


Q ss_pred             h------hhccc------------CCCCCCccEEEEecCCch-hh-----------------------------------
Q 045021          183 L------ESLEV------------GNQPPSLKSLNVWSCSKL-ES-----------------------------------  208 (461)
Q Consensus       183 ~------~~~~~------------~~~~~~L~~L~l~~~~~l-~~-----------------------------------  208 (461)
                      -      ..+.+            ... .+|+.|++.++... ..                                   
T Consensus       173 ~~L~~~~~~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~  251 (570)
T 2z63_A          173 HQMPLLNLSLDLSLNPMNFIQPGAFKE-IRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSAL  251 (570)
T ss_dssp             HTCTTCCCEEECTTCCCCEECTTTTTT-CEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTT
T ss_pred             hccchhhhhcccCCCCceecCHHHhcc-CcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhh
Confidence            0      00000            000 24777776654110 11                                   


Q ss_pred             ----------------------hHHhhcCCCccceeeccccccceecccccCCCCCccEEEecCCCCCccCCCCCCCCCC
Q 045021          209 ----------------------IAERLDNNTSLEMISILWCENLKFLPSGLHNLRQLQEIQLWGCENLVSFPEGGLPCAK  266 (461)
Q Consensus       209 ----------------------~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~  266 (461)
                                            .+..+..+++|++|+++++ .+..+|..+..+ +|+.|++++| .+..++.  ..+++
T Consensus       252 ~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~-~l~~l~~~~~~~-~L~~L~l~~n-~~~~l~~--~~l~~  326 (570)
T 2z63_A          252 EGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSV-TIERVKDFSYNF-GWQHLELVNC-KFGQFPT--LKLKS  326 (570)
T ss_dssp             GGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESC-EECSCCBCCSCC-CCSEEEEESC-BCSSCCB--CBCSS
T ss_pred             ccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCc-cchhhhhhhccC-CccEEeeccC-cccccCc--ccccc
Confidence                                  1122333455555555544 233445445444 5555555554 2333333  23345


Q ss_pred             cceEeeccCccccccccccCCCCCccEEEecc-cCCCcC---C-CCCCCCcceEEeecCchhhHHhhhhcccCCCCcCEE
Q 045021          267 LSKLGIYRCERLEALPKGLHNLKSLKKLRIGG-KLPSLE---E-DGLPTNLHFLKIERNMEIWKSMIERGFHKFSSLRHL  341 (461)
Q Consensus       267 L~~L~l~~c~~~~~~~~~~~~l~~L~~L~l~~-~~~~l~---~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L  341 (461)
                      |++|++.+|......+.  ..+++|++|++++ .+....   . ...+++|++|++++|.... . +. .+..+++|++|
T Consensus       327 L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~-~-~~-~~~~l~~L~~L  401 (570)
T 2z63_A          327 LKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-M-SS-NFLGLEQLEHL  401 (570)
T ss_dssp             CCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEE-E-EE-EEETCTTCCEE
T ss_pred             cCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccc-c-cc-cccccCCCCEE
Confidence            66666655443332221  4566666666666 433321   1 1344566666666665221 1 11 25567777777


Q ss_pred             EEecCCCcccccCc-cccccCCCCCCCCCcceeecCCCCCCcccccchhhccCCcEEEecCCCCCc--ccCCC-CCcccc
Q 045021          342 TIEGCDDDMVSFPP-EDRRLGTTLPLPASLASLTIGDFPNLERLSSSIVDLQNLKYLKLYDCPKLK--YFSEK-GLPSSL  417 (461)
Q Consensus       342 ~l~~~~~~~~~i~~-~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~L~~L~l~~C~~l~--~~~~~-~~~~~L  417 (461)
                      ++++|  .+...+. ..+      ..+++|++|++++|.-....+..+..+++|++|++++| .++  .+|.. ..+++|
T Consensus       402 ~l~~n--~l~~~~~~~~~------~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~p~~~~~l~~L  472 (570)
T 2z63_A          402 DFQHS--NLKQMSEFSVF------LSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGN-SFQENFLPDIFTELRNL  472 (570)
T ss_dssp             ECTTS--EEESCTTSCTT------TTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTC-EEGGGEECSCCTTCTTC
T ss_pred             EccCC--ccccccchhhh------hcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCC-cCccccchhhhhcccCC
Confidence            77776  4444322 112      35678888888886433344566778888888888884 444  34432 225888


Q ss_pred             cEeeccCCchhHHhhcccCccccccccccceEEEcccEEe
Q 045021          418 LRLYIDECPLIEEKCRKDGEQYWDLLTHIPRVRIHLPVVF  457 (461)
Q Consensus       418 ~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  457 (461)
                      ++|++++|...     ......+..+.++..+++.++.+.
T Consensus       473 ~~L~l~~n~l~-----~~~~~~~~~l~~L~~L~l~~n~l~  507 (570)
T 2z63_A          473 TFLDLSQCQLE-----QLSPTAFNSLSSLQVLNMASNQLK  507 (570)
T ss_dssp             CEEECTTSCCC-----EECTTTTTTCTTCCEEECCSSCCS
T ss_pred             CEEECCCCccc-----cCChhhhhcccCCCEEeCCCCcCC
Confidence            99999888432     112234455678888888887654

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.94  E-value=4e-25  Score=234.63  Aligned_cols=401  Identities=16%  Similarity=0.156  Sum_probs=220.7

Q ss_pred             cCCccEEEecCCcCCccc-cccCCCCCCcCEEEecCCcCcccccC--CCCCCCccEEEEeecCCcccc-CcccccCCCCc
Q 045021           28 SCRLEYLILRYCKGLVKL-PQSSLSLSSLREIEICRCHSLVSFPE--VALPSKLKKIEIRECDALKSL-PEAWMCGTNSS  103 (461)
Q Consensus        28 ~~~L~~L~l~~~~~l~~l-~~~~~~l~~L~~L~l~~~~~l~~~~~--~~~l~~L~~L~l~~~~~l~~~-~~~~~~~~~~~  103 (461)
                      ++++++|+|+++. +..+ +..+.++++|++|++++|.....+++  ++.+++|++|+++++. +..+ |..+...  ++
T Consensus        23 p~~l~~LdLs~N~-i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~-l~~~~p~~~~~l--~~   98 (844)
T 3j0a_A           23 LNTTERLLLSFNY-IRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSK-IYFLHPDAFQGL--FH   98 (844)
T ss_dssp             CTTCCEEEEESCC-CCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCC-CCEECTTSSCSC--SS
T ss_pred             CCCcCEEECCCCc-CCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCc-CcccCHhHccCC--cc
Confidence            3666777776633 3433 45566667777777766644444533  6666667777766655 4443 4444433  66


Q ss_pred             ccEEEeeCCCCCccccc---cCCCCCccEEecccCCCceEeccCCCcccccccccccCccEEEEecCCCCeecccCCCCc
Q 045021          104 LEILKIWSCHSLPYIAR---VQLPPSLKRLDISHCDNIRTLTVEDGIQSSSRRYTSYLLEKLEIWDCPSLTCIFSKNELP  180 (461)
Q Consensus       104 L~~L~l~~~~~l~~~~~---~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~  180 (461)
                      |++|+++++.--...+.   ...+++|++|+++++. +..++....+..      +++|+.|++++ +.++. .....+.
T Consensus        99 L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~-l~~~~~~~~~~~------L~~L~~L~Ls~-N~i~~-~~~~~l~  169 (844)
T 3j0a_A           99 LFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQ-IRSLYLHPSFGK------LNSLKSIDFSS-NQIFL-VCEHELE  169 (844)
T ss_dssp             CCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCC-CCCCCCCGGGGT------CSSCCEEEEES-SCCCC-CCSGGGH
T ss_pred             cCEeeCcCCCCCcccccCccccccCCCCEEECCCCc-ccccccchhHhh------CCCCCEEECCC-CcCCe-eCHHHcc
Confidence            66666666432222222   3456666666666654 222210012332      44666666666 44433 1111110


Q ss_pred             c----hhhhcccC------------CCC------CCccEEEEecCCchhhhHH---------------------------
Q 045021          181 A----TLESLEVG------------NQP------PSLKSLNVWSCSKLESIAE---------------------------  211 (461)
Q Consensus       181 ~----~~~~~~~~------------~~~------~~L~~L~l~~~~~l~~~~~---------------------------  211 (461)
                      .    .++.+.+.            ..+      .+|+.|+++++......+.                           
T Consensus       170 ~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~  249 (844)
T 3j0a_A          170 PLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGF  249 (844)
T ss_dssp             HHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSC
T ss_pred             cccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccc
Confidence            0    00000000            000      1377777776522111111                           


Q ss_pred             ---------hhcC--CCccceeeccccccceecccccCCCCCccEEEecCCCCCccCCCCCCCCCCcceEeeccCccccc
Q 045021          212 ---------RLDN--NTSLEMISILWCENLKFLPSGLHNLRQLQEIQLWGCENLVSFPEGGLPCAKLSKLGIYRCERLEA  280 (461)
Q Consensus       212 ---------~~~~--l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~~~~  280 (461)
                               .+..  .++|+.|++++|......+..+..+++|+.|++++|..-...+.....+++|++|++++|.-...
T Consensus       250 ~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~  329 (844)
T 3j0a_A          250 HNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGEL  329 (844)
T ss_dssp             SSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCC
T ss_pred             cccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCcc
Confidence                     1111  26788888888755455567788889999999998743333344556677899999988754444


Q ss_pred             cccccCCCCCccEEEecc-cCCCcCCC--CCCCCcceEEeecCchhhHHhhhhcccCCCCcCEEEEecCCCcccccCccc
Q 045021          281 LPKGLHNLKSLKKLRIGG-KLPSLEED--GLPTNLHFLKIERNMEIWKSMIERGFHKFSSLRHLTIEGCDDDMVSFPPED  357 (461)
Q Consensus       281 ~~~~~~~l~~L~~L~l~~-~~~~l~~~--~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~i~~~~  357 (461)
                      .+..+..+++|++|++++ .+..++..  ..+++|++|++++|. ++      .+..+++|+.|.+++|  .+..++...
T Consensus       330 ~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~-l~------~i~~~~~L~~L~l~~N--~l~~l~~~~  400 (844)
T 3j0a_A          330 YSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNA-LT------TIHFIPSIPDIFLSGN--KLVTLPKIN  400 (844)
T ss_dssp             CSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCC-SC------CCSSCCSCSEEEEESC--CCCCCCCCC
T ss_pred             CHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCC-CC------cccCCCCcchhccCCC--Ccccccccc
Confidence            466788899999999988 66666643  456889999999887 22      2444788888888887  666665420


Q ss_pred             ccc-----C-----CC-----CCCCCCcceeecCCCCCCcccc--cchhhccCCcEEEecCCCCCcccCCC-------CC
Q 045021          358 RRL-----G-----TT-----LPLPASLASLTIGDFPNLERLS--SSIVDLQNLKYLKLYDCPKLKYFSEK-------GL  413 (461)
Q Consensus       358 ~~~-----~-----~~-----~~~~~~L~~L~l~~~~~l~~i~--~~~~~~~~L~~L~l~~C~~l~~~~~~-------~~  413 (461)
                      ...     .     ..     ...+++|+.|+++++ .+..++  ..+..+++|+.|++++ +.++..+..       .-
T Consensus       401 ~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~~~L~~L~Ls~-N~l~~~~~~~~~~~~~~~  478 (844)
T 3j0a_A          401 LTANLIHLSENRLENLDILYFLLRVPHLQILILNQN-RFSSCSGDQTPSENPSLEQLFLGE-NMLQLAWETELCWDVFEG  478 (844)
T ss_dssp             TTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESC-CCCCCCSSSSSCSCTTCCBCEEES-CCCSSSCCSCCCSSCSSC
T ss_pred             cccceeecccCccccCchhhhhhcCCccceeeCCCC-cccccccccccccCCccccccCCC-CccccccccccchhhhcC
Confidence            000     0     00     012345555555552 343332  1233455566666655 444432211       11


Q ss_pred             cccccEeeccCCchhHHhhcccCccccccccccceEEEcccEEe
Q 045021          414 PSSLLRLYIDECPLIEEKCRKDGEQYWDLLTHIPRVRIHLPVVF  457 (461)
Q Consensus       414 ~~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  457 (461)
                      +++|++|++++|. ++    ......+..+.++..+++.+|.+.
T Consensus       479 l~~L~~L~Ls~N~-l~----~~~~~~~~~l~~L~~L~Ls~N~l~  517 (844)
T 3j0a_A          479 LSHLQVLYLNHNY-LN----SLPPGVFSHLTALRGLSLNSNRLT  517 (844)
T ss_dssp             BCCEECCCCCHHH-HT----TCCTTSSSSCCSCSEEEEESCCCS
T ss_pred             cccccEEECCCCc-cc----ccChhHccchhhhheeECCCCCCC
Confidence            3567777776662 11    222334566778888888888764

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.94  E-value=1.1e-25  Score=223.34  Aligned_cols=340  Identities=18%  Similarity=0.226  Sum_probs=195.8

Q ss_pred             CCccEEEecCCcCCccccccCCCCCCcCEEEecCCcCcccccCCCCCCCccEEEEeecCCccccCcccccCCCCcccEEE
Q 045021           29 CRLEYLILRYCKGLVKLPQSSLSLSSLREIEICRCHSLVSFPEVALPSKLKKIEIRECDALKSLPEAWMCGTNSSLEILK  108 (461)
Q Consensus        29 ~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~  108 (461)
                      +++++|++.++ .+..+|. +..+++|++|++++| .+..++++..+++|++|+++++. +..++. +...  ++|+.|+
T Consensus        46 ~~l~~L~l~~~-~i~~l~~-~~~l~~L~~L~Ls~n-~l~~~~~~~~l~~L~~L~l~~n~-l~~~~~-~~~l--~~L~~L~  118 (466)
T 1o6v_A           46 DQVTTLQADRL-GIKSIDG-VEYLNNLTQINFSNN-QLTDITPLKNLTKLVDILMNNNQ-IADITP-LANL--TNLTGLT  118 (466)
T ss_dssp             HTCCEEECCSS-CCCCCTT-GGGCTTCCEEECCSS-CCCCCGGGTTCTTCCEEECCSSC-CCCCGG-GTTC--TTCCEEE
T ss_pred             ccccEEecCCC-CCccCcc-hhhhcCCCEEECCCC-ccCCchhhhccccCCEEECCCCc-cccChh-hcCC--CCCCEEE
Confidence            67777777764 3455654 667777777777776 45556556777777777777765 555554 3333  7777777


Q ss_pred             eeCCCCCccccccCCCCCccEEecccCCCceEeccCCCcccccccccccCccEEEEecCCCCeecccCCCCcchhhhccc
Q 045021          109 IWSCHSLPYIARVQLPPSLKRLDISHCDNIRTLTVEDGIQSSSRRYTSYLLEKLEIWDCPSLTCIFSKNELPATLESLEV  188 (461)
Q Consensus       109 l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~  188 (461)
                      ++++ .++.++....+++|++|+++++. +..++  . +..      +++|+.|++.+  .+.. .+.  +         
T Consensus       119 L~~n-~l~~~~~~~~l~~L~~L~l~~n~-l~~~~--~-~~~------l~~L~~L~l~~--~~~~-~~~--~---------  173 (466)
T 1o6v_A          119 LFNN-QITDIDPLKNLTNLNRLELSSNT-ISDIS--A-LSG------LTSLQQLSFGN--QVTD-LKP--L---------  173 (466)
T ss_dssp             CCSS-CCCCCGGGTTCTTCSEEEEEEEE-ECCCG--G-GTT------CTTCSEEEEEE--SCCC-CGG--G---------
T ss_pred             CCCC-CCCCChHHcCCCCCCEEECCCCc-cCCCh--h-hcc------CCcccEeecCC--cccC-chh--h---------
Confidence            7774 55565556667777777777754 33333  1 222      44677777653  2222 111  1         


Q ss_pred             CCCCCCccEEEEecCCchhhhHHhhcCCCccceeeccccccceecccccCCCCCccEEEecCCCCCccCCCCCCCCCCcc
Q 045021          189 GNQPPSLKSLNVWSCSKLESIAERLDNNTSLEMISILWCENLKFLPSGLHNLRQLQEIQLWGCENLVSFPEGGLPCAKLS  268 (461)
Q Consensus       189 ~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~  268 (461)
                       ..+++|+.|++.++. +..++ .+..+++|++|++++|. +...+. ++.+++|+.|++++| .+..++. ...+++|+
T Consensus       174 -~~l~~L~~L~l~~n~-l~~~~-~l~~l~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L~l~~n-~l~~~~~-l~~l~~L~  246 (466)
T 1o6v_A          174 -ANLTTLERLDISSNK-VSDIS-VLAKLTNLESLIATNNQ-ISDITP-LGILTNLDELSLNGN-QLKDIGT-LASLTNLT  246 (466)
T ss_dssp             -TTCTTCCEEECCSSC-CCCCG-GGGGCTTCSEEECCSSC-CCCCGG-GGGCTTCCEEECCSS-CCCCCGG-GGGCTTCS
T ss_pred             -ccCCCCCEEECcCCc-CCCCh-hhccCCCCCEEEecCCc-cccccc-ccccCCCCEEECCCC-Ccccchh-hhcCCCCC
Confidence             112457777776643 33332 35566777777776653 322222 455667777777665 3333322 23345677


Q ss_pred             eEeeccCccccccccccCCCCCccEEEecc-cCCCcCCCCCCCCcceEEeecCchhhHHhhhhcccCCCCcCEEEEecCC
Q 045021          269 KLGIYRCERLEALPKGLHNLKSLKKLRIGG-KLPSLEEDGLPTNLHFLKIERNMEIWKSMIERGFHKFSSLRHLTIEGCD  347 (461)
Q Consensus       269 ~L~l~~c~~~~~~~~~~~~l~~L~~L~l~~-~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~  347 (461)
                      +|++++|. +..++. +..+++|++|++++ .+..++....+++|++|++++|. +....   .+..+++|++|++++| 
T Consensus       247 ~L~l~~n~-l~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~-l~~~~---~~~~l~~L~~L~L~~n-  319 (466)
T 1o6v_A          247 DLDLANNQ-ISNLAP-LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQ-LEDIS---PISNLKNLTYLTLYFN-  319 (466)
T ss_dssp             EEECCSSC-CCCCGG-GTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSC-CSCCG---GGGGCTTCSEEECCSS-
T ss_pred             EEECCCCc-cccchh-hhcCCCCCEEECCCCccCccccccCCCccCeEEcCCCc-ccCch---hhcCCCCCCEEECcCC-
Confidence            77776653 333333 66667777777766 55555545555667777777665 22221   2456667777777766 


Q ss_pred             CcccccCccccccCCCCCCCCCcceeecCCCCCCcccccchhhccCCcEEEecCCCCCcccCCCCCcccccEeeccCCc
Q 045021          348 DDMVSFPPEDRRLGTTLPLPASLASLTIGDFPNLERLSSSIVDLQNLKYLKLYDCPKLKYFSEKGLPSSLLRLYIDECP  426 (461)
Q Consensus       348 ~~~~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~L~~L~l~~C~~l~~~~~~~~~~~L~~L~i~~c~  426 (461)
                       .+..++.  +      ..+++|++|++++| .+..+ ..+..+++|+.|++++ +.++..+.-..+++|++|++++|+
T Consensus       320 -~l~~~~~--~------~~l~~L~~L~l~~n-~l~~~-~~l~~l~~L~~L~l~~-n~l~~~~~~~~l~~L~~L~l~~n~  386 (466)
T 1o6v_A          320 -NISDISP--V------SSLTKLQRLFFYNN-KVSDV-SSLANLTNINWLSAGH-NQISDLTPLANLTRITQLGLNDQA  386 (466)
T ss_dssp             -CCSCCGG--G------GGCTTCCEEECCSS-CCCCC-GGGTTCTTCCEEECCS-SCCCBCGGGTTCTTCCEEECCCEE
T ss_pred             -cCCCchh--h------ccCccCCEeECCCC-ccCCc-hhhccCCCCCEEeCCC-CccCccchhhcCCCCCEEeccCCc
Confidence             4444433  1      24556777777764 55555 3556667777777766 344444333334666777766664

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.94  E-value=2.4e-25  Score=220.78  Aligned_cols=328  Identities=17%  Similarity=0.192  Sum_probs=252.3

Q ss_pred             hhhhhhhcCCccEEEecCCcCCccccccCCCCCCcCEEEecCCcCcccccCCCCCCCccEEEEeecCCccccCcccccCC
Q 045021           21 QQQLCELSCRLEYLILRYCKGLVKLPQSSLSLSSLREIEICRCHSLVSFPEVALPSKLKKIEIRECDALKSLPEAWMCGT  100 (461)
Q Consensus        21 l~~l~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~  100 (461)
                      +..+    ++|++|+++++ .+..++. +..+++|++|++++| .+..+++++.+++|++|++++|. +..++. +..  
T Consensus        64 ~~~l----~~L~~L~Ls~n-~l~~~~~-~~~l~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~L~~n~-l~~~~~-~~~--  132 (466)
T 1o6v_A           64 VEYL----NNLTQINFSNN-QLTDITP-LKNLTKLVDILMNNN-QIADITPLANLTNLTGLTLFNNQ-ITDIDP-LKN--  132 (466)
T ss_dssp             GGGC----TTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSS-CCCCCGGGTTCTTCCEEECCSSC-CCCCGG-GTT--
T ss_pred             hhhh----cCCCEEECCCC-ccCCchh-hhccccCCEEECCCC-ccccChhhcCCCCCCEEECCCCC-CCCChH-HcC--
Confidence            5555    99999999995 4677776 999999999999997 56667668999999999999976 777765 443  


Q ss_pred             CCcccEEEeeCCCCCccccccCCCCCccEEecccCCCceEeccCCCcccccccccccCccEEEEecCCCCeecccCCCCc
Q 045021          101 NSSLEILKIWSCHSLPYIARVQLPPSLKRLDISHCDNIRTLTVEDGIQSSSRRYTSYLLEKLEIWDCPSLTCIFSKNELP  180 (461)
Q Consensus       101 ~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~  180 (461)
                      +++|++|+++++ .++.++....+++|+.|++.+.  +..++  . +..      +++|+.|++++ +.+.. ++.  +.
T Consensus       133 l~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~l~~~--~~~~~--~-~~~------l~~L~~L~l~~-n~l~~-~~~--l~  196 (466)
T 1o6v_A          133 LTNLNRLELSSN-TISDISALSGLTSLQQLSFGNQ--VTDLK--P-LAN------LTTLERLDISS-NKVSD-ISV--LA  196 (466)
T ss_dssp             CTTCSEEEEEEE-EECCCGGGTTCTTCSEEEEEES--CCCCG--G-GTT------CTTCCEEECCS-SCCCC-CGG--GG
T ss_pred             CCCCCEEECCCC-ccCCChhhccCCcccEeecCCc--ccCch--h-hcc------CCCCCEEECcC-CcCCC-Chh--hc
Confidence            499999999985 5666777788999999999752  23333  2 333      56899999999 56665 321  11


Q ss_pred             chhhhcccCCCCCCccEEEEecCCchhhhHHhhcCCCccceeeccccccceecccccCCCCCccEEEecCCCCCccCCCC
Q 045021          181 ATLESLEVGNQPPSLKSLNVWSCSKLESIAERLDNNTSLEMISILWCENLKFLPSGLHNLRQLQEIQLWGCENLVSFPEG  260 (461)
Q Consensus       181 ~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~  260 (461)
                                .+++|++|++.++......+  ++.+++|++|++++| .+..++ .+..+++|+.|++++|. +..++. 
T Consensus       197 ----------~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n-~l~~~~-~l~~l~~L~~L~l~~n~-l~~~~~-  260 (466)
T 1o6v_A          197 ----------KLTNLESLIATNNQISDITP--LGILTNLDELSLNGN-QLKDIG-TLASLTNLTDLDLANNQ-ISNLAP-  260 (466)
T ss_dssp             ----------GCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSS-CCCCCG-GGGGCTTCSEEECCSSC-CCCCGG-
T ss_pred             ----------cCCCCCEEEecCCccccccc--ccccCCCCEEECCCC-Ccccch-hhhcCCCCCEEECCCCc-cccchh-
Confidence                      22689999999964333322  677999999999987 454443 57788999999999984 444443 


Q ss_pred             CCCCCCcceEeeccCccccccccccCCCCCccEEEecc-cCCCcCCCCCCCCcceEEeecCchhhHHhhhhcccCCCCcC
Q 045021          261 GLPCAKLSKLGIYRCERLEALPKGLHNLKSLKKLRIGG-KLPSLEEDGLPTNLHFLKIERNMEIWKSMIERGFHKFSSLR  339 (461)
Q Consensus       261 ~~~~~~L~~L~l~~c~~~~~~~~~~~~l~~L~~L~l~~-~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~  339 (461)
                      ...+++|++|++++| .++.++. +..+++|++|++++ .+..++....+++|+.|++++|. +.+..   .+..+++|+
T Consensus       261 ~~~l~~L~~L~l~~n-~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~L~~n~-l~~~~---~~~~l~~L~  334 (466)
T 1o6v_A          261 LSGLTKLTELKLGAN-QISNISP-LAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNN-ISDIS---PVSSLTKLQ  334 (466)
T ss_dssp             GTTCTTCSEEECCSS-CCCCCGG-GTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSC-CSCCG---GGGGCTTCC
T ss_pred             hhcCCCCCEEECCCC-ccCcccc-ccCCCccCeEEcCCCcccCchhhcCCCCCCEEECcCCc-CCCch---hhccCccCC
Confidence            455679999999996 4555655 88999999999999 77777766778899999999997 43333   267899999


Q ss_pred             EEEEecCCCcccccCccccccCCCCCCCCCcceeecCCCCCCcccccchhhccCCcEEEecCCCCCcccCC
Q 045021          340 HLTIEGCDDDMVSFPPEDRRLGTTLPLPASLASLTIGDFPNLERLSSSIVDLQNLKYLKLYDCPKLKYFSE  410 (461)
Q Consensus       340 ~L~l~~~~~~~~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~L~~L~l~~C~~l~~~~~  410 (461)
                      +|++++|  .+..++.  +      ..+++|+.|++++| .+..++. +..+++|+.|++++ +.++..|.
T Consensus       335 ~L~l~~n--~l~~~~~--l------~~l~~L~~L~l~~n-~l~~~~~-~~~l~~L~~L~l~~-n~~~~~p~  392 (466)
T 1o6v_A          335 RLFFYNN--KVSDVSS--L------ANLTNINWLSAGHN-QISDLTP-LANLTRITQLGLND-QAWTNAPV  392 (466)
T ss_dssp             EEECCSS--CCCCCGG--G------TTCTTCCEEECCSS-CCCBCGG-GTTCTTCCEEECCC-EEEECCCB
T ss_pred             EeECCCC--ccCCchh--h------ccCCCCCEEeCCCC-ccCccch-hhcCCCCCEEeccC-CcccCCch
Confidence            9999998  6766643  3      36789999999996 5666544 88999999999999 66776655

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.94  E-value=4.4e-25  Score=223.75  Aligned_cols=379  Identities=17%  Similarity=0.182  Sum_probs=224.2

Q ss_pred             CCccEEEecCCcCCccc-cccCCCCCCcCEEEecCCcCcccccC--CCCCCCccEEEEeecCCccccCcc-cccCCCCcc
Q 045021           29 CRLEYLILRYCKGLVKL-PQSSLSLSSLREIEICRCHSLVSFPE--VALPSKLKKIEIRECDALKSLPEA-WMCGTNSSL  104 (461)
Q Consensus        29 ~~L~~L~l~~~~~l~~l-~~~~~~l~~L~~L~l~~~~~l~~~~~--~~~l~~L~~L~l~~~~~l~~~~~~-~~~~~~~~L  104 (461)
                      ++|++|+++++. +..+ |..+..+++|++|++++| .+..+++  ++.+++|++|+++++. +..++.. +...  ++|
T Consensus        26 ~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l--~~L  100 (549)
T 2z81_A           26 AAMKSLDLSFNK-ITYIGHGDLRACANLQVLILKSS-RINTIEGDAFYSLGSLEHLDLSDNH-LSSLSSSWFGPL--SSL  100 (549)
T ss_dssp             TTCCEEECCSSC-CCEECSSTTSSCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTSC-CCSCCHHHHTTC--TTC
T ss_pred             CCccEEECcCCc-cCccChhhhhcCCcccEEECCCC-CcCccChhhccccccCCEEECCCCc-cCccCHHHhccC--CCC
Confidence            789999999854 5655 567899999999999997 5666654  8889999999999976 7777665 4444  899


Q ss_pred             cEEEeeCCCCCccc---cccCCCCCccEEecccCCCceEeccCC-CcccccccccccCccEEEEecCCCCeecccCCCCc
Q 045021          105 EILKIWSCHSLPYI---ARVQLPPSLKRLDISHCDNIRTLTVED-GIQSSSRRYTSYLLEKLEIWDCPSLTCIFSKNELP  180 (461)
Q Consensus       105 ~~L~l~~~~~l~~~---~~~~~~~~L~~L~l~~~~~~~~l~~~~-~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~  180 (461)
                      ++|+++++ .++.+   .....+++|++|+++++..+..++  . .+..      +++|+.|++++ +.++...+ ..+.
T Consensus       101 ~~L~Ls~n-~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~--~~~~~~------l~~L~~L~L~~-n~l~~~~~-~~l~  169 (549)
T 2z81_A          101 KYLNLMGN-PYQTLGVTSLFPNLTNLQTLRIGNVETFSEIR--RIDFAG------LTSLNELEIKA-LSLRNYQS-QSLK  169 (549)
T ss_dssp             CEEECTTC-CCSSSCSSCSCTTCTTCCEEEEEESSSCCEEC--TTTTTT------CCEEEEEEEEE-TTCCEECT-TTTT
T ss_pred             cEEECCCC-cccccchhhhhhccCCccEEECCCCccccccC--Hhhhhc------ccccCeeeccC-CcccccCh-hhhh
Confidence            99999885 45432   234778899999999987666665  3 3333      56899999998 66665222 2222


Q ss_pred             chhhhcccCCCCCCccEEEEecCCchhhhHH-hhcCCCccceeecccccccee---------------------------
Q 045021          181 ATLESLEVGNQPPSLKSLNVWSCSKLESIAE-RLDNNTSLEMISILWCENLKF---------------------------  232 (461)
Q Consensus       181 ~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~-~~~~l~~L~~L~l~~~~~~~~---------------------------  232 (461)
                      ..          ++|+.|++.++. ...++. .+..+++|++|++++|.....                           
T Consensus       170 ~l----------~~L~~L~l~~n~-~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~  238 (549)
T 2z81_A          170 SI----------RDIHHLTLHLSE-SAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDE  238 (549)
T ss_dssp             TC----------SEEEEEEEECSB-STTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHH
T ss_pred             cc----------ccCceEecccCc-ccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchh
Confidence            21          456667666643 233333 234566666666665532110                           


Q ss_pred             ----cccccCCCCCccEEEecCCCCCc--cCC----CCCCCC-----------------------------CCcceEeec
Q 045021          233 ----LPSGLHNLRQLQEIQLWGCENLV--SFP----EGGLPC-----------------------------AKLSKLGIY  273 (461)
Q Consensus       233 ----~~~~~~~l~~L~~L~l~~~~~l~--~l~----~~~~~~-----------------------------~~L~~L~l~  273 (461)
                          ++..+..+++|+.+++++|....  .++    .....+                             ++|++|+++
T Consensus       239 ~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~  318 (549)
T 2z81_A          239 SFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVE  318 (549)
T ss_dssp             HHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEE
T ss_pred             HHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEec
Confidence                11112233444444444432100  000    001112                             245555555


Q ss_pred             cCcccccccccc-CCCCCccEEEecc-cCCCc-----CCCCCCCCcceEEeecCchhhHHhhhhcccCCCCcCEEEEecC
Q 045021          274 RCERLEALPKGL-HNLKSLKKLRIGG-KLPSL-----EEDGLPTNLHFLKIERNMEIWKSMIERGFHKFSSLRHLTIEGC  346 (461)
Q Consensus       274 ~c~~~~~~~~~~-~~l~~L~~L~l~~-~~~~l-----~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~  346 (461)
                      +| .++.+|..+ ..+++|++|++++ .+...     ...+.+++|++|++++|..-........+..+++|++|++++|
T Consensus       319 ~n-~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N  397 (549)
T 2z81_A          319 NS-KVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRN  397 (549)
T ss_dssp             SS-CCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTC
T ss_pred             cC-ccccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCC
Confidence            53 244455443 3567777777776 43321     1124456777777777652221111123566777777777776


Q ss_pred             CCcccccCccccccCCCCCCCCCcceeecCCCCCCcccccchhhccCCcEEEecCCCCCcccCCCCCcccccEeeccCCc
Q 045021          347 DDDMVSFPPEDRRLGTTLPLPASLASLTIGDFPNLERLSSSIVDLQNLKYLKLYDCPKLKYFSEKGLPSSLLRLYIDECP  426 (461)
Q Consensus       347 ~~~~~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~L~~L~l~~C~~l~~~~~~~~~~~L~~L~i~~c~  426 (461)
                        .+..+|.. +      ..+++|++|+++++ .++.++..+  .++|++|++++ ++++.++.  ..++|++|++++|.
T Consensus       398 --~l~~lp~~-~------~~~~~L~~L~Ls~N-~l~~l~~~~--~~~L~~L~Ls~-N~l~~~~~--~l~~L~~L~Ls~N~  462 (549)
T 2z81_A          398 --TFHPMPDS-C------QWPEKMRFLNLSST-GIRVVKTCI--PQTLEVLDVSN-NNLDSFSL--FLPRLQELYISRNK  462 (549)
T ss_dssp             --CCCCCCSC-C------CCCTTCCEEECTTS-CCSCCCTTS--CTTCSEEECCS-SCCSCCCC--CCTTCCEEECCSSC
T ss_pred             --CCccCChh-h------cccccccEEECCCC-Ccccccchh--cCCceEEECCC-CChhhhcc--cCChhcEEECCCCc
Confidence              56666654 3      24567777777773 565554222  25677777777 46665532  34788888888874


Q ss_pred             hhHHhhcccCccccccccccceEEEcccEEe
Q 045021          427 LIEEKCRKDGEQYWDLLTHIPRVRIHLPVVF  457 (461)
Q Consensus       427 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  457 (461)
                      .- .      -+.+..+.++..+++.+|.+.
T Consensus       463 l~-~------ip~~~~l~~L~~L~Ls~N~l~  486 (549)
T 2z81_A          463 LK-T------LPDASLFPVLLVMKISRNQLK  486 (549)
T ss_dssp             CS-S------CCCGGGCTTCCEEECCSSCCC
T ss_pred             cC-c------CCCcccCccCCEEecCCCccC
Confidence            22 1      122445677888888777654

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.94  E-value=4.1e-25  Score=224.42  Aligned_cols=363  Identities=15%  Similarity=0.134  Sum_probs=238.1

Q ss_pred             cCCccEEEecCCcCCcccc-ccCCCCCCcCEEEecCCcCcccccC--CCCCCCccEEEEeecCCccccCcccccCCCCcc
Q 045021           28 SCRLEYLILRYCKGLVKLP-QSSLSLSSLREIEICRCHSLVSFPE--VALPSKLKKIEIRECDALKSLPEAWMCGTNSSL  104 (461)
Q Consensus        28 ~~~L~~L~l~~~~~l~~l~-~~~~~l~~L~~L~l~~~~~l~~~~~--~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L  104 (461)
                      +++|++|+++++. +..++ ..+..+++|++|++++| .+..+++  ++.+++|++|+++++. ++.+|..  .  +++|
T Consensus        51 ~~~L~~L~Ls~N~-i~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~--~--l~~L  123 (562)
T 3a79_B           51 PPRTKALSLSQNS-ISELRMPDISFLSELRVLRLSHN-RIRSLDFHVFLFNQDLEYLDVSHNR-LQNISCC--P--MASL  123 (562)
T ss_dssp             CTTCCEEECCSSC-CCCCCGGGTTTCTTCCEEECCSC-CCCEECTTTTTTCTTCCEEECTTSC-CCEECSC--C--CTTC
T ss_pred             CCCcCEEECCCCC-ccccChhhhccCCCccEEECCCC-CCCcCCHHHhCCCCCCCEEECCCCc-CCccCcc--c--cccC
Confidence            4899999999954 56664 57999999999999997 5666644  8889999999999976 8888877  3  4899


Q ss_pred             cEEEeeCCCCCcccc---ccCCCCCccEEecccCCCceEeccCCCcccccccccccCc--cEEEEecCCCC--eecccCC
Q 045021          105 EILKIWSCHSLPYIA---RVQLPPSLKRLDISHCDNIRTLTVEDGIQSSSRRYTSYLL--EKLEIWDCPSL--TCIFSKN  177 (461)
Q Consensus       105 ~~L~l~~~~~l~~~~---~~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~~~~L--~~L~l~~~~~l--~~~~~~~  177 (461)
                      ++|+++++ .++.++   ....+++|++|+++++. +..    ..+..      +++|  +.|++++ +.+  .. ....
T Consensus       124 ~~L~Ls~N-~l~~l~~p~~~~~l~~L~~L~L~~n~-l~~----~~~~~------l~~L~L~~L~L~~-n~l~~~~-~~~~  189 (562)
T 3a79_B          124 RHLDLSFN-DFDVLPVCKEFGNLTKLTFLGLSAAK-FRQ----LDLLP------VAHLHLSCILLDL-VSYHIKG-GETE  189 (562)
T ss_dssp             SEEECCSS-CCSBCCCCGGGGGCTTCCEEEEECSB-CCT----TTTGG------GTTSCEEEEEEEE-SSCCCCS-SSCC
T ss_pred             CEEECCCC-CccccCchHhhcccCcccEEecCCCc-ccc----Cchhh------hhhceeeEEEeec-ccccccc-cCcc
Confidence            99999995 566544   34778999999999864 222    22222      3345  9999998 555  33 1111


Q ss_pred             CCcchh-hhcc---------------cCCCCCCccEEEEecCC----chhhhHHhhcC----------------------
Q 045021          178 ELPATL-ESLE---------------VGNQPPSLKSLNVWSCS----KLESIAERLDN----------------------  215 (461)
Q Consensus       178 ~~~~~~-~~~~---------------~~~~~~~L~~L~l~~~~----~l~~~~~~~~~----------------------  215 (461)
                      .+...- ..+.               ....+++|+.+++.++.    .+......+..                      
T Consensus       190 ~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~  269 (562)
T 3a79_B          190 SLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKL  269 (562)
T ss_dssp             EEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHH
T ss_pred             cccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHH
Confidence            111100 0000               01122456666666532    01111111122                      


Q ss_pred             -----CCccceeeccccccceeccccc-----CCCC--------------------------CccEEEecCCCCCccCCC
Q 045021          216 -----NTSLEMISILWCENLKFLPSGL-----HNLR--------------------------QLQEIQLWGCENLVSFPE  259 (461)
Q Consensus       216 -----l~~L~~L~l~~~~~~~~~~~~~-----~~l~--------------------------~L~~L~l~~~~~l~~l~~  259 (461)
                           ..+|++|++++|...+.+|..+     ..++                          +|+.|++++|. +.....
T Consensus       270 ~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~-~~~~~~  348 (562)
T 3a79_B          270 FQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTP-FIHMVC  348 (562)
T ss_dssp             HHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSC-CCCCCC
T ss_pred             HHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCC-cccccC
Confidence                 2367777777664333555444     3333                          35555555542 221111


Q ss_pred             CCCCCCCcceEeeccCccccccccccCCCCCccEEEecc-cCCCcCC----CCCCCCcceEEeecCchhhHHhhhhcccC
Q 045021          260 GGLPCAKLSKLGIYRCERLEALPKGLHNLKSLKKLRIGG-KLPSLEE----DGLPTNLHFLKIERNMEIWKSMIERGFHK  334 (461)
Q Consensus       260 ~~~~~~~L~~L~l~~c~~~~~~~~~~~~l~~L~~L~l~~-~~~~l~~----~~~~~~L~~L~l~~~~~l~~~~~~~~~~~  334 (461)
                       ...+++|++|++++|......|..+..+++|++|++++ .+..++.    ...+++|++|++++|. +....+...+..
T Consensus       349 -~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~~  426 (562)
T 3a79_B          349 -PPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNS-LNSHAYDRTCAW  426 (562)
T ss_dssp             -CSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSC-CBSCCSSCCCCC
T ss_pred             -ccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCc-CCCccChhhhcC
Confidence             14566889999988765555677788889999999988 6665542    3566789999998887 332233335677


Q ss_pred             CCCcCEEEEecCCCccc-ccCccccccCCCCCCCCCcceeecCCCCCCcccccchhhccCCcEEEecCCCCCcccCCC--
Q 045021          335 FSSLRHLTIEGCDDDMV-SFPPEDRRLGTTLPLPASLASLTIGDFPNLERLSSSIVDLQNLKYLKLYDCPKLKYFSEK--  411 (461)
Q Consensus       335 l~~L~~L~l~~~~~~~~-~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~L~~L~l~~C~~l~~~~~~--  411 (461)
                      +++|++|++++|  .+. .++..         .+++|+.|+++++ .++.+|..+..+++|++|++++ ++++.+|..  
T Consensus       427 l~~L~~L~l~~n--~l~~~~~~~---------l~~~L~~L~L~~N-~l~~ip~~~~~l~~L~~L~L~~-N~l~~l~~~~~  493 (562)
T 3a79_B          427 AESILVLNLSSN--MLTGSVFRC---------LPPKVKVLDLHNN-RIMSIPKDVTHLQALQELNVAS-NQLKSVPDGVF  493 (562)
T ss_dssp             CTTCCEEECCSS--CCCGGGGSS---------CCTTCSEEECCSS-CCCCCCTTTTSSCCCSEEECCS-SCCCCCCTTST
T ss_pred             cccCCEEECCCC--CCCcchhhh---------hcCcCCEEECCCC-cCcccChhhcCCCCCCEEECCC-CCCCCCCHHHH
Confidence            889999999987  443 33332         3368999999984 7888887777899999999999 788888875  


Q ss_pred             CCcccccEeeccCCch
Q 045021          412 GLPSSLLRLYIDECPL  427 (461)
Q Consensus       412 ~~~~~L~~L~i~~c~~  427 (461)
                      ...++|++|+++++|.
T Consensus       494 ~~l~~L~~L~l~~N~~  509 (562)
T 3a79_B          494 DRLTSLQYIWLHDNPW  509 (562)
T ss_dssp             TTCTTCCCEECCSCCB
T ss_pred             hcCCCCCEEEecCCCc
Confidence            2268899999988763

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.93  E-value=5e-25  Score=218.02  Aligned_cols=341  Identities=15%  Similarity=0.145  Sum_probs=222.6

Q ss_pred             hcCCccEEEecCCcCCccc-cccCCCCCCcCEEEecCCcCcccccC--CCCCCCccEEEEeecCCcccc-CcccccCCCC
Q 045021           27 LSCRLEYLILRYCKGLVKL-PQSSLSLSSLREIEICRCHSLVSFPE--VALPSKLKKIEIRECDALKSL-PEAWMCGTNS  102 (461)
Q Consensus        27 ~~~~L~~L~l~~~~~l~~l-~~~~~~l~~L~~L~l~~~~~l~~~~~--~~~l~~L~~L~l~~~~~l~~~-~~~~~~~~~~  102 (461)
                      .+++|++|+++++. +..+ |..++++++|++|++++|.....+++  +..+++|++|+++++. +..+ |..+...  +
T Consensus        28 l~~~l~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l--~  103 (455)
T 3v47_A           28 LPAHVNYVDLSLNS-IAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQ-FLQLETGAFNGL--A  103 (455)
T ss_dssp             CCTTCCEEECCSSC-CCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCT-TCEECTTTTTTC--T
T ss_pred             CCCccCEEEecCCc-cCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCc-cCccChhhccCc--c
Confidence            45899999999954 5655 77899999999999999855445654  8889999999999977 5555 5555555  9


Q ss_pred             cccEEEeeCCCCCcc-cc-c--cCCCCCccEEecccCCCceEeccCCC-cccccccccccCccEEEEecCCCCeecccCC
Q 045021          103 SLEILKIWSCHSLPY-IA-R--VQLPPSLKRLDISHCDNIRTLTVEDG-IQSSSRRYTSYLLEKLEIWDCPSLTCIFSKN  177 (461)
Q Consensus       103 ~L~~L~l~~~~~l~~-~~-~--~~~~~~L~~L~l~~~~~~~~l~~~~~-~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~  177 (461)
                      +|++|+++++. ++. .+ .  ...+++|++|+++++......|  .. +..      +++|+.|++++ +.++. ....
T Consensus       104 ~L~~L~L~~n~-l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~~~~------l~~L~~L~L~~-n~l~~-~~~~  172 (455)
T 3v47_A          104 NLEVLTLTQCN-LDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQP--ASFFLN------MRRFHVLDLTF-NKVKS-ICEE  172 (455)
T ss_dssp             TCCEEECTTSC-CBTHHHHSSTTTTCTTCCEEECCSSBCCSCCC--CGGGGG------CTTCCEEECTT-CCBSC-CCTT
T ss_pred             cCCEEeCCCCC-CCccccCcccccCcccCCEEECCCCccCccCc--ccccCC------CCcccEEeCCC-Ccccc-cChh
Confidence            99999999964 443 22 2  4678999999999976333334  33 333      66899999999 67766 3333


Q ss_pred             CCcchhhhcccCCCCCCccEEEEecCCchhhhHH--------hhcCCCccceeeccccccceecccccCC---CCCccEE
Q 045021          178 ELPATLESLEVGNQPPSLKSLNVWSCSKLESIAE--------RLDNNTSLEMISILWCENLKFLPSGLHN---LRQLQEI  246 (461)
Q Consensus       178 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~--------~~~~l~~L~~L~l~~~~~~~~~~~~~~~---l~~L~~L  246 (461)
                      .+...        ..++|+.|++.++......+.        .+..+++|++|++++|......+..+..   .++|+.|
T Consensus       173 ~l~~l--------~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L  244 (455)
T 3v47_A          173 DLLNF--------QGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSL  244 (455)
T ss_dssp             TSGGG--------TTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEE
T ss_pred             hhhcc--------ccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeE
Confidence            33221        013588888888543321111        2335688999999988544444443332   3789999


Q ss_pred             EecCCCCCccCCC------------CCCCCCCcceEeeccCccccccccccCCCCCccEEEecc-cCCCcCCC--CCCCC
Q 045021          247 QLWGCENLVSFPE------------GGLPCAKLSKLGIYRCERLEALPKGLHNLKSLKKLRIGG-KLPSLEED--GLPTN  311 (461)
Q Consensus       247 ~l~~~~~l~~l~~------------~~~~~~~L~~L~l~~c~~~~~~~~~~~~l~~L~~L~l~~-~~~~l~~~--~~~~~  311 (461)
                      ++++|........            .....++|++|++++|......|..+..+++|++|++++ .+..++..  ..+++
T Consensus       245 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~  324 (455)
T 3v47_A          245 ILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTH  324 (455)
T ss_dssp             ECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred             eeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCccc
Confidence            9988743322110            111234788888888665555566777788888888877 55554332  34567


Q ss_pred             cceEEeecCchhhHHhhhhcccCCCCcCEEEEecCCCcccccCccccccCCCCCCCCCcceeecCCCCCCcccc-cchhh
Q 045021          312 LHFLKIERNMEIWKSMIERGFHKFSSLRHLTIEGCDDDMVSFPPEDRRLGTTLPLPASLASLTIGDFPNLERLS-SSIVD  390 (461)
Q Consensus       312 L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~-~~~~~  390 (461)
                      |++|++++|. ++ ......+..+++|++|++++|  .+..++...+      ..+++|++|++++ +.++.++ ..+..
T Consensus       325 L~~L~Ls~N~-l~-~~~~~~~~~l~~L~~L~Ls~N--~l~~~~~~~~------~~l~~L~~L~L~~-N~l~~~~~~~~~~  393 (455)
T 3v47_A          325 LLKLNLSQNF-LG-SIDSRMFENLDKLEVLDLSYN--HIRALGDQSF------LGLPNLKELALDT-NQLKSVPDGIFDR  393 (455)
T ss_dssp             CCEEECCSSC-CC-EECGGGGTTCTTCCEEECCSS--CCCEECTTTT------TTCTTCCEEECCS-SCCSCCCTTTTTT
T ss_pred             CCEEECCCCc-cC-CcChhHhcCcccCCEEECCCC--cccccChhhc------cccccccEEECCC-CccccCCHhHhcc
Confidence            7777777775 22 122234566777777777776  5555533323      2456777777777 4566665 34466


Q ss_pred             ccCCcEEEecC
Q 045021          391 LQNLKYLKLYD  401 (461)
Q Consensus       391 ~~~L~~L~l~~  401 (461)
                      +++|++|++++
T Consensus       394 l~~L~~L~l~~  404 (455)
T 3v47_A          394 LTSLQKIWLHT  404 (455)
T ss_dssp             CTTCCEEECCS
T ss_pred             CCcccEEEccC
Confidence            77777777776

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.93  E-value=2.5e-24  Score=216.68  Aligned_cols=355  Identities=14%  Similarity=0.121  Sum_probs=228.7

Q ss_pred             hhhhhhhhhcCCccEEEecCCcCCccc-cccCCCCCCcCEEEecCCcCcccccCCCCCCCccEEEEeecCCccc--cCcc
Q 045021           19 DQQQQLCELSCRLEYLILRYCKGLVKL-PQSSLSLSSLREIEICRCHSLVSFPEVALPSKLKKIEIRECDALKS--LPEA   95 (461)
Q Consensus        19 ~~l~~l~~~~~~L~~L~l~~~~~l~~l-~~~~~~l~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~l~~~~~l~~--~~~~   95 (461)
                      ..+..+    ++|++|+++++. +..+ |..+.++++|++|++++| .+..+|.. .+++|++|+++++. +..  +|..
T Consensus        39 ~~~~~l----~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~-~l~~L~~L~L~~N~-l~~~~~p~~  110 (520)
T 2z7x_B           39 SDILSL----SKLRILIISHNR-IQYLDISVFKFNQELEYLDLSHN-KLVKISCH-PTVNLKHLDLSFNA-FDALPICKE  110 (520)
T ss_dssp             HHHTTC----TTCCEEECCSSC-CCEEEGGGGTTCTTCCEEECCSS-CCCEEECC-CCCCCSEEECCSSC-CSSCCCCGG
T ss_pred             hhcccc----ccccEEecCCCc-cCCcChHHhhcccCCCEEecCCC-ceeecCcc-ccCCccEEeccCCc-cccccchhh
Confidence            456777    999999999954 5655 778999999999999997 56778877 88999999999976 554  4567


Q ss_pred             cccCCCCcccEEEeeCCCCCccccccCCCCCc--cEEecccCCC--ceEeccCCCccccc--------------------
Q 045021           96 WMCGTNSSLEILKIWSCHSLPYIARVQLPPSL--KRLDISHCDN--IRTLTVEDGIQSSS--------------------  151 (461)
Q Consensus        96 ~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L--~~L~l~~~~~--~~~l~~~~~~~~~~--------------------  151 (461)
                      +...  ++|++|+++++ .++. .....+++|  ++|+++++..  ....|  ..+....                    
T Consensus       111 ~~~l--~~L~~L~L~~n-~l~~-~~~~~l~~L~L~~L~l~~n~l~~~~~~~--~~l~~l~~~~l~l~l~~n~~~~~~~~~  184 (520)
T 2z7x_B          111 FGNM--SQLKFLGLSTT-HLEK-SSVLPIAHLNISKVLLVLGETYGEKEDP--EGLQDFNTESLHIVFPTNKEFHFILDV  184 (520)
T ss_dssp             GGGC--TTCCEEEEEES-SCCG-GGGGGGTTSCEEEEEEEECTTTTSSCCT--TTTTTCCEEEEEEECCSSSCCCCCCCC
T ss_pred             hccC--CcceEEEecCc-ccch-hhccccccceeeEEEeeccccccccccc--ccccccccceEEEEeccCcchhhhhhh
Confidence            7666  89999999985 4443 223445666  8888887653  22223  2222100                    


Q ss_pred             ccccccCccEEEEecCCC------CeecccC-CCCcchhhhccc---------------CCCCCCccEEEEecCCchhhh
Q 045021          152 RRYTSYLLEKLEIWDCPS------LTCIFSK-NELPATLESLEV---------------GNQPPSLKSLNVWSCSKLESI  209 (461)
Q Consensus       152 ~~~~~~~L~~L~l~~~~~------l~~~~~~-~~~~~~~~~~~~---------------~~~~~~L~~L~l~~~~~l~~~  209 (461)
                      ....+++|+.++++++..      +...++. ...+ .++.+.+               ....++|++|++.++...+.+
T Consensus       185 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~-~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~  263 (520)
T 2z7x_B          185 SVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNP-KLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQL  263 (520)
T ss_dssp             CCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCT-TCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCC
T ss_pred             hhhcccceeeccccccccccccceeecchhhhcccc-chhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCcc
Confidence            000122344444443210      0000000 0000 0000000               000123455555443222123


Q ss_pred             HHhh-----cCC--------------------------CccceeeccccccceecccccCCCCCccEEEecCCCCCccCC
Q 045021          210 AERL-----DNN--------------------------TSLEMISILWCENLKFLPSGLHNLRQLQEIQLWGCENLVSFP  258 (461)
Q Consensus       210 ~~~~-----~~l--------------------------~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~  258 (461)
                      |..+     ..+                          .+|++|+++++. +...+ ....+++|++|++++|......+
T Consensus       264 p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~-l~~~~-~~~~l~~L~~L~Ls~n~l~~~~~  341 (520)
T 2z7x_B          264 DFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTR-MVHML-CPSKISPFLHLDFSNNLLTDTVF  341 (520)
T ss_dssp             CCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSC-CCCCC-CCSSCCCCCEEECCSSCCCTTTT
T ss_pred             ccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCc-ccccc-chhhCCcccEEEeECCccChhhh
Confidence            3222     333                          345666665543 21111 12678999999999985544466


Q ss_pred             CCCCCCCCcceEeeccCcccc--ccccccCCCCCccEEEecc-cCCC-cCCC--CCCCCcceEEeecCchhhHHhhhhcc
Q 045021          259 EGGLPCAKLSKLGIYRCERLE--ALPKGLHNLKSLKKLRIGG-KLPS-LEED--GLPTNLHFLKIERNMEIWKSMIERGF  332 (461)
Q Consensus       259 ~~~~~~~~L~~L~l~~c~~~~--~~~~~~~~l~~L~~L~l~~-~~~~-l~~~--~~~~~L~~L~l~~~~~l~~~~~~~~~  332 (461)
                      .....+++|++|++++|....  .+|..+..+++|++|++++ .+.. ++..  ..+++|++|++++|. ++...+    
T Consensus       342 ~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~-l~~~~~----  416 (520)
T 2z7x_B          342 ENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNI-LTDTIF----  416 (520)
T ss_dssp             TTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSC-CCGGGG----
T ss_pred             hhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCC-CCcchh----
Confidence            666778899999999975433  4566789999999999999 7666 6653  567899999999998 332222    


Q ss_pred             cCC-CCcCEEEEecCCCcccccCccccccCCCCCCCCCcceeecCCCCCCcccccc-hhhccCCcEEEecCCCCCc
Q 045021          333 HKF-SSLRHLTIEGCDDDMVSFPPEDRRLGTTLPLPASLASLTIGDFPNLERLSSS-IVDLQNLKYLKLYDCPKLK  406 (461)
Q Consensus       333 ~~l-~~L~~L~l~~~~~~~~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~-~~~~~~L~~L~l~~C~~l~  406 (461)
                      ..+ ++|++|++++|  ++..+|.. +      ..+++|++|+++++ .++.+|.. +..+++|++|++++ +.++
T Consensus       417 ~~l~~~L~~L~Ls~N--~l~~ip~~-~------~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~l~~-N~~~  481 (520)
T 2z7x_B          417 RCLPPRIKVLDLHSN--KIKSIPKQ-V------VKLEALQELNVASN-QLKSVPDGIFDRLTSLQKIWLHT-NPWD  481 (520)
T ss_dssp             GSCCTTCCEEECCSS--CCCCCCGG-G------GGCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCS-SCBC
T ss_pred             hhhcccCCEEECCCC--cccccchh-h------hcCCCCCEEECCCC-cCCccCHHHhccCCcccEEECcC-CCCc
Confidence            223 79999999998  88888886 4      26789999999995 78889865 88899999999999 5544

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.93  E-value=1.4e-24  Score=206.92  Aligned_cols=100  Identities=11%  Similarity=0.102  Sum_probs=53.9

Q ss_pred             CCccEEEecCCcCCccccccCCCCCCcCEEEecCCcCcccccCCCCCCCccEEEEeecCCccccCcccccCCCCcccEEE
Q 045021           29 CRLEYLILRYCKGLVKLPQSSLSLSSLREIEICRCHSLVSFPEVALPSKLKKIEIRECDALKSLPEAWMCGTNSSLEILK  108 (461)
Q Consensus        29 ~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~  108 (461)
                      ++|++|+++++ .+..++. +..+++|++|++++| .+.+++.+..+++|++|++++|. +..++ .+..  +++|++|+
T Consensus        44 ~~L~~L~l~~~-~i~~~~~-~~~~~~L~~L~l~~n-~i~~~~~~~~l~~L~~L~L~~n~-i~~~~-~~~~--l~~L~~L~  116 (347)
T 4fmz_A           44 ESITKLVVAGE-KVASIQG-IEYLTNLEYLNLNGN-QITDISPLSNLVKLTNLYIGTNK-ITDIS-ALQN--LTNLRELY  116 (347)
T ss_dssp             TTCSEEECCSS-CCCCCTT-GGGCTTCCEEECCSS-CCCCCGGGTTCTTCCEEECCSSC-CCCCG-GGTT--CTTCSEEE
T ss_pred             ccccEEEEeCC-ccccchh-hhhcCCccEEEccCC-ccccchhhhcCCcCCEEEccCCc-ccCch-HHcC--CCcCCEEE
Confidence            66666666663 3345543 566666666666665 44555556666666666666653 44443 2222  25566666


Q ss_pred             eeCCCCCccccccCCCCCccEEecccCC
Q 045021          109 IWSCHSLPYIARVQLPPSLKRLDISHCD  136 (461)
Q Consensus       109 l~~~~~l~~~~~~~~~~~L~~L~l~~~~  136 (461)
                      ++++ .++.++....+++|++|+++++.
T Consensus       117 l~~n-~i~~~~~~~~l~~L~~L~l~~n~  143 (347)
T 4fmz_A          117 LNED-NISDISPLANLTKMYSLNLGANH  143 (347)
T ss_dssp             CTTS-CCCCCGGGTTCTTCCEEECTTCT
T ss_pred             CcCC-cccCchhhccCCceeEEECCCCC
Confidence            6553 34444434444555555555543

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.93  E-value=2.5e-24  Score=205.20  Aligned_cols=306  Identities=16%  Similarity=0.207  Sum_probs=235.7

Q ss_pred             CCCCCCcCEEEecCCcCcccccCCCCCCCccEEEEeecCCccccCcccccCCCCcccEEEeeCCCCCccccccCCCCCcc
Q 045021           49 SLSLSSLREIEICRCHSLVSFPEVALPSKLKKIEIRECDALKSLPEAWMCGTNSSLEILKIWSCHSLPYIARVQLPPSLK  128 (461)
Q Consensus        49 ~~~l~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~  128 (461)
                      +..+++|++|++.++ .+..++.+..+++|++|++++|. +..++. +..  +++|++|+++++ .++.++....+++|+
T Consensus        40 ~~~l~~L~~L~l~~~-~i~~~~~~~~~~~L~~L~l~~n~-i~~~~~-~~~--l~~L~~L~L~~n-~i~~~~~~~~l~~L~  113 (347)
T 4fmz_A           40 QEELESITKLVVAGE-KVASIQGIEYLTNLEYLNLNGNQ-ITDISP-LSN--LVKLTNLYIGTN-KITDISALQNLTNLR  113 (347)
T ss_dssp             HHHHTTCSEEECCSS-CCCCCTTGGGCTTCCEEECCSSC-CCCCGG-GTT--CTTCCEEECCSS-CCCCCGGGTTCTTCS
T ss_pred             chhcccccEEEEeCC-ccccchhhhhcCCccEEEccCCc-cccchh-hhc--CCcCCEEEccCC-cccCchHHcCCCcCC
Confidence            557889999999997 56778878889999999999975 777776 444  499999999996 677777778899999


Q ss_pred             EEecccCCCceEeccCCCcccccccccccCccEEEEecCCCCeecccCCCCcchhhhcccCCCCCCccEEEEecCCchhh
Q 045021          129 RLDISHCDNIRTLTVEDGIQSSSRRYTSYLLEKLEIWDCPSLTCIFSKNELPATLESLEVGNQPPSLKSLNVWSCSKLES  208 (461)
Q Consensus       129 ~L~l~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~  208 (461)
                      +|+++++. +..++  . +..      +++|+.|++++|..+.. .+.  +          ..+++|+.|++.++. +..
T Consensus       114 ~L~l~~n~-i~~~~--~-~~~------l~~L~~L~l~~n~~~~~-~~~--~----------~~l~~L~~L~l~~~~-~~~  169 (347)
T 4fmz_A          114 ELYLNEDN-ISDIS--P-LAN------LTKMYSLNLGANHNLSD-LSP--L----------SNMTGLNYLTVTESK-VKD  169 (347)
T ss_dssp             EEECTTSC-CCCCG--G-GTT------CTTCCEEECTTCTTCCC-CGG--G----------TTCTTCCEEECCSSC-CCC
T ss_pred             EEECcCCc-ccCch--h-hcc------CCceeEEECCCCCCccc-ccc--h----------hhCCCCcEEEecCCC-cCC
Confidence            99999976 44555  3 333      66899999999766654 222  1          122679999999964 333


Q ss_pred             hHHhhcCCCccceeeccccccceecccccCCCCCccEEEecCCCCCccCCCCCCCCCCcceEeeccCccccccccccCCC
Q 045021          209 IAERLDNNTSLEMISILWCENLKFLPSGLHNLRQLQEIQLWGCENLVSFPEGGLPCAKLSKLGIYRCERLEALPKGLHNL  288 (461)
Q Consensus       209 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~l  288 (461)
                      .+. +..+++|++|++++| .+..++. +..+++|+.+++++| .+..++. ...+++|++|++++| .++.++. +..+
T Consensus       170 ~~~-~~~l~~L~~L~l~~n-~l~~~~~-~~~l~~L~~L~l~~n-~l~~~~~-~~~~~~L~~L~l~~n-~l~~~~~-~~~l  242 (347)
T 4fmz_A          170 VTP-IANLTDLYSLSLNYN-QIEDISP-LASLTSLHYFTAYVN-QITDITP-VANMTRLNSLKIGNN-KITDLSP-LANL  242 (347)
T ss_dssp             CGG-GGGCTTCSEEECTTS-CCCCCGG-GGGCTTCCEEECCSS-CCCCCGG-GGGCTTCCEEECCSS-CCCCCGG-GTTC
T ss_pred             chh-hccCCCCCEEEccCC-ccccccc-ccCCCccceeecccC-CCCCCch-hhcCCcCCEEEccCC-ccCCCcc-hhcC
Confidence            332 788999999999987 4555554 778899999999997 4444433 445679999999996 4555655 8899


Q ss_pred             CCccEEEecc-cCCCcCCCCCCCCcceEEeecCchhhHHhhhhcccCCCCcCEEEEecCCCcccccCccccccCCCCCCC
Q 045021          289 KSLKKLRIGG-KLPSLEEDGLPTNLHFLKIERNMEIWKSMIERGFHKFSSLRHLTIEGCDDDMVSFPPEDRRLGTTLPLP  367 (461)
Q Consensus       289 ~~L~~L~l~~-~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~i~~~~~~~~~~~~~~  367 (461)
                      ++|++|++++ .+..++....+++|++|++++|. +...   ..+..+++|++|++++|  .+...+...++      .+
T Consensus       243 ~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~-l~~~---~~~~~l~~L~~L~L~~n--~l~~~~~~~l~------~l  310 (347)
T 4fmz_A          243 SQLTWLEIGTNQISDINAVKDLTKLKMLNVGSNQ-ISDI---SVLNNLSQLNSLFLNNN--QLGNEDMEVIG------GL  310 (347)
T ss_dssp             TTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSC-CCCC---GGGGGCTTCSEEECCSS--CCCGGGHHHHH------TC
T ss_pred             CCCCEEECCCCccCCChhHhcCCCcCEEEccCCc-cCCC---hhhcCCCCCCEEECcCC--cCCCcChhHhh------cc
Confidence            9999999999 77777767788999999999997 4322   24788999999999998  66655544243      57


Q ss_pred             CCcceeecCCCCCCcccccchhhccCCcEEEecCCCCCc
Q 045021          368 ASLASLTIGDFPNLERLSSSIVDLQNLKYLKLYDCPKLK  406 (461)
Q Consensus       368 ~~L~~L~l~~~~~l~~i~~~~~~~~~L~~L~l~~C~~l~  406 (461)
                      ++|++|++++| .+..++. +..+++|++|++++ +.++
T Consensus       311 ~~L~~L~L~~n-~l~~~~~-~~~l~~L~~L~l~~-N~i~  346 (347)
T 4fmz_A          311 TNLTTLFLSQN-HITDIRP-LASLSKMDSADFAN-QVIK  346 (347)
T ss_dssp             TTCSEEECCSS-SCCCCGG-GGGCTTCSEESSSC-C---
T ss_pred             ccCCEEEccCC-ccccccC-hhhhhccceeehhh-hccc
Confidence            89999999996 5777654 78999999999999 4443

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.92  E-value=3.6e-24  Score=210.70  Aligned_cols=325  Identities=26%  Similarity=0.295  Sum_probs=176.0

Q ss_pred             hhhhhhhcCCccEEEecCCcCCccccccCCCCCCc-------------CEEEecCCcCcccccCCCCCCCccEEEEeecC
Q 045021           21 QQQLCELSCRLEYLILRYCKGLVKLPQSSLSLSSL-------------REIEICRCHSLVSFPEVALPSKLKKIEIRECD   87 (461)
Q Consensus        21 l~~l~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L-------------~~L~l~~~~~l~~~~~~~~l~~L~~L~l~~~~   87 (461)
                      ++++    ++|++|+++++.-...+|..++.+++|             ++|++++| .+..+|.  .+++|++|+++++.
T Consensus        30 i~~L----~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~-~l~~lp~--~~~~L~~L~l~~n~  102 (454)
T 1jl5_A           30 AENV----KSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNL-GLSSLPE--LPPHLESLVASCNS  102 (454)
T ss_dssp             --------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTS-CCSCCCS--CCTTCSEEECCSSC
T ss_pred             Hhcc----cchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCC-ccccCCC--CcCCCCEEEccCCc
Confidence            5555    666666666644323556666666553             66666665 3555554  24566677666644


Q ss_pred             CccccCcccccCCCCcccEEEeeCCCCCccccccCCCCCccEEecccCCCceEeccCCCcccccccccccCccEEEEecC
Q 045021           88 ALKSLPEAWMCGTNSSLEILKIWSCHSLPYIARVQLPPSLKRLDISHCDNIRTLTVEDGIQSSSRRYTSYLLEKLEIWDC  167 (461)
Q Consensus        88 ~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~  167 (461)
                       ++.+|..     .++|+.|+++++ .++.++.  ..++|++|+++++. ++.+|  . +..      +++|+.|++++ 
T Consensus       103 -l~~lp~~-----~~~L~~L~l~~n-~l~~l~~--~~~~L~~L~L~~n~-l~~lp--~-~~~------l~~L~~L~l~~-  162 (454)
T 1jl5_A          103 -LTELPEL-----PQSLKSLLVDNN-NLKALSD--LPPLLEYLGVSNNQ-LEKLP--E-LQN------SSFLKIIDVDN-  162 (454)
T ss_dssp             -CSSCCCC-----CTTCCEEECCSS-CCSCCCS--CCTTCCEEECCSSC-CSSCC--C-CTT------CTTCCEEECCS-
T ss_pred             -CCccccc-----cCCCcEEECCCC-ccCcccC--CCCCCCEEECcCCC-CCCCc--c-cCC------CCCCCEEECCC-
Confidence             5555532     156666666663 4444332  12566666666653 33344  2 322      44666666666 


Q ss_pred             CCCeecccCCCCcchhhhcccCCCCCCccEEEEecCCchhhhHHhhcCCCccceeeccccccceecccccCCCCCccEEE
Q 045021          168 PSLTCIFSKNELPATLESLEVGNQPPSLKSLNVWSCSKLESIAERLDNNTSLEMISILWCENLKFLPSGLHNLRQLQEIQ  247 (461)
Q Consensus       168 ~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~  247 (461)
                      ++++. +|...              ++|++|++.++ .+..++ .+..+++|++|++++| .+..+|...   ++|+.|+
T Consensus       163 N~l~~-lp~~~--------------~~L~~L~L~~n-~l~~l~-~~~~l~~L~~L~l~~N-~l~~l~~~~---~~L~~L~  221 (454)
T 1jl5_A          163 NSLKK-LPDLP--------------PSLEFIAAGNN-QLEELP-ELQNLPFLTAIYADNN-SLKKLPDLP---LSLESIV  221 (454)
T ss_dssp             SCCSC-CCCCC--------------TTCCEEECCSS-CCSSCC-CCTTCTTCCEEECCSS-CCSSCCCCC---TTCCEEE
T ss_pred             CcCcc-cCCCc--------------ccccEEECcCC-cCCcCc-cccCCCCCCEEECCCC-cCCcCCCCc---CcccEEE
Confidence            45544 33211              24666666664 333344 4566666666666665 233333322   4666666


Q ss_pred             ecCCCCCccCCCCCCCCCCcceEeeccCccccccccccCCCCCccEEEecc-cCCCcCCCCCCCCcceEEeecCchhhHH
Q 045021          248 LWGCENLVSFPEGGLPCAKLSKLGIYRCERLEALPKGLHNLKSLKKLRIGG-KLPSLEEDGLPTNLHFLKIERNMEIWKS  326 (461)
Q Consensus       248 l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~l~~L~~L~l~~-~~~~l~~~~~~~~L~~L~l~~~~~l~~~  326 (461)
                      +++| .+..++. ...+++|++|++++| .++.+|.   .+++|++|++++ .+..++.  .+++|++|++++|. +.. 
T Consensus       222 l~~n-~l~~lp~-~~~l~~L~~L~l~~N-~l~~l~~---~~~~L~~L~l~~N~l~~l~~--~~~~L~~L~ls~N~-l~~-  291 (454)
T 1jl5_A          222 AGNN-ILEELPE-LQNLPFLTTIYADNN-LLKTLPD---LPPSLEALNVRDNYLTDLPE--LPQSLTFLDVSENI-FSG-  291 (454)
T ss_dssp             CCSS-CCSSCCC-CTTCTTCCEEECCSS-CCSSCCS---CCTTCCEEECCSSCCSCCCC--CCTTCCEEECCSSC-CSE-
T ss_pred             CcCC-cCCcccc-cCCCCCCCEEECCCC-cCCcccc---cccccCEEECCCCcccccCc--ccCcCCEEECcCCc-cCc-
Confidence            6665 3445553 444556666666664 3344443   235666666666 5554443  23566666666665 211 


Q ss_pred             hhhhcccCCCCcCEEEEecCCCcccccCccccccCCCCCCCCCcceeecCCCCCCcccccchhhccCCcEEEecCCCCCc
Q 045021          327 MIERGFHKFSSLRHLTIEGCDDDMVSFPPEDRRLGTTLPLPASLASLTIGDFPNLERLSSSIVDLQNLKYLKLYDCPKLK  406 (461)
Q Consensus       327 ~~~~~~~~l~~L~~L~l~~~~~~~~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~L~~L~l~~C~~l~  406 (461)
                      .+    ...++|++|++++|  .+..++.          .+++|++|++++ +.+..+|..   +++|++|++++ ++++
T Consensus       292 l~----~~~~~L~~L~l~~N--~l~~i~~----------~~~~L~~L~Ls~-N~l~~lp~~---~~~L~~L~L~~-N~l~  350 (454)
T 1jl5_A          292 LS----ELPPNLYYLNASSN--EIRSLCD----------LPPSLEELNVSN-NKLIELPAL---PPRLERLIASF-NHLA  350 (454)
T ss_dssp             ES----CCCTTCCEEECCSS--CCSEECC----------CCTTCCEEECCS-SCCSCCCCC---CTTCCEEECCS-SCCS
T ss_pred             cc----CcCCcCCEEECcCC--cCCcccC----------CcCcCCEEECCC-Ccccccccc---CCcCCEEECCC-Cccc
Confidence            00    11246666666665  4444332          335777777777 456666533   46777777777 5666


Q ss_pred             ccCCCCCcccccEeeccCCc
Q 045021          407 YFSEKGLPSSLLRLYIDECP  426 (461)
Q Consensus       407 ~~~~~~~~~~L~~L~i~~c~  426 (461)
                      .+|.  .+++|++|++++|.
T Consensus       351 ~lp~--~l~~L~~L~L~~N~  368 (454)
T 1jl5_A          351 EVPE--LPQNLKQLHVEYNP  368 (454)
T ss_dssp             CCCC--CCTTCCEEECCSSC
T ss_pred             cccc--hhhhccEEECCCCC
Confidence            6666  45777777777764

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.92  E-value=4.1e-24  Score=211.42  Aligned_cols=358  Identities=16%  Similarity=0.141  Sum_probs=243.0

Q ss_pred             EEEecCCcCCccccccCCCCCCcCEEEecCCcCcccc-cC-CCCCCCccEEEEeecCCccccCcc-cccCCCCcccEEEe
Q 045021           33 YLILRYCKGLVKLPQSSLSLSSLREIEICRCHSLVSF-PE-VALPSKLKKIEIRECDALKSLPEA-WMCGTNSSLEILKI  109 (461)
Q Consensus        33 ~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~-~~-~~~l~~L~~L~l~~~~~l~~~~~~-~~~~~~~~L~~L~l  109 (461)
                      .++.++ .++..+|. +.  ++|++|++++| .+..+ |. ++.+++|++|+++++.....++.. +..  +++|++|++
T Consensus        14 ~~~c~~-~~l~~lp~-l~--~~l~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~--l~~L~~L~L   86 (455)
T 3v47_A           14 NAICIN-RGLHQVPE-LP--AHVNYVDLSLN-SIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRG--LSSLIILKL   86 (455)
T ss_dssp             EEECCS-SCCSSCCC-CC--TTCCEEECCSS-CCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTT--CTTCCEEEC
T ss_pred             ccCcCC-CCcccCCC-CC--CccCEEEecCC-ccCcCChhHhccCccccEEECcCCcccceECcccccc--cccCCEEeC
Confidence            445554 45677777 33  79999999997 55656 33 889999999999998744455544 433  499999999


Q ss_pred             eCCCCCccc-cc-cCCCCCccEEecccCCCceEeccCCCcccccccccccCccEEEEecCCCCeecccCCCCcchhhhcc
Q 045021          110 WSCHSLPYI-AR-VQLPPSLKRLDISHCDNIRTLTVEDGIQSSSRRYTSYLLEKLEIWDCPSLTCIFSKNELPATLESLE  187 (461)
Q Consensus       110 ~~~~~l~~~-~~-~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~  187 (461)
                      +++. ++.. +. ...+++|++|+++++......+....+..      +++|+.|++++ +.++.+.+...+...     
T Consensus        87 s~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~------l~~L~~L~L~~-n~l~~~~~~~~~~~l-----  153 (455)
T 3v47_A           87 DYNQ-FLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKP------LTSLEMLVLRD-NNIKKIQPASFFLNM-----  153 (455)
T ss_dssp             TTCT-TCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTT------CTTCCEEECCS-SBCCSCCCCGGGGGC-----
T ss_pred             CCCc-cCccChhhccCcccCCEEeCCCCCCCccccCcccccC------cccCCEEECCC-CccCccCcccccCCC-----
Confidence            9964 5554 33 37789999999999863322231112333      56899999998 666652232222222     


Q ss_pred             cCCCCCCccEEEEecCCchhhhHHhhcCC--Cccceeeccccccceeccc--------ccCCCCCccEEEecCCCCCccC
Q 045021          188 VGNQPPSLKSLNVWSCSKLESIAERLDNN--TSLEMISILWCENLKFLPS--------GLHNLRQLQEIQLWGCENLVSF  257 (461)
Q Consensus       188 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~l--~~L~~L~l~~~~~~~~~~~--------~~~~l~~L~~L~l~~~~~l~~l  257 (461)
                           ++|++|++.++......+..+..+  .+|+.|+++++......+.        .+..+++|+.|++++|......
T Consensus       154 -----~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~  228 (455)
T 3v47_A          154 -----RRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESM  228 (455)
T ss_dssp             -----TTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHH
T ss_pred             -----CcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccc
Confidence                 679999998865444444444443  6889999988743322111        2335678999999998433322


Q ss_pred             CCC---CCCCCCcceEeeccCccccccc----------cccC--CCCCccEEEecc-cCCCcCCC--CCCCCcceEEeec
Q 045021          258 PEG---GLPCAKLSKLGIYRCERLEALP----------KGLH--NLKSLKKLRIGG-KLPSLEED--GLPTNLHFLKIER  319 (461)
Q Consensus       258 ~~~---~~~~~~L~~L~l~~c~~~~~~~----------~~~~--~l~~L~~L~l~~-~~~~l~~~--~~~~~L~~L~l~~  319 (461)
                      +..   ....++|+.|++++|.......          ..+.  ..++|++|++++ .+..+...  ..+++|++|++++
T Consensus       229 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~  308 (455)
T 3v47_A          229 AKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQ  308 (455)
T ss_dssp             HHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTT
T ss_pred             hhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCC
Confidence            221   1122589999998875332110          0111  236899999999 66554332  5678999999999


Q ss_pred             CchhhHHhhhhcccCCCCcCEEEEecCCCcccccCccccccCCCCCCCCCcceeecCCCCCCccc-ccchhhccCCcEEE
Q 045021          320 NMEIWKSMIERGFHKFSSLRHLTIEGCDDDMVSFPPEDRRLGTTLPLPASLASLTIGDFPNLERL-SSSIVDLQNLKYLK  398 (461)
Q Consensus       320 ~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i-~~~~~~~~~L~~L~  398 (461)
                      |. +.. .....+..+++|++|++++|  .+..++...+      ..+++|++|+++++ .+..+ +..+..+++|++|+
T Consensus       309 n~-l~~-~~~~~~~~l~~L~~L~Ls~N--~l~~~~~~~~------~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~  377 (455)
T 3v47_A          309 NE-INK-IDDNAFWGLTHLLKLNLSQN--FLGSIDSRMF------ENLDKLEVLDLSYN-HIRALGDQSFLGLPNLKELA  377 (455)
T ss_dssp             SC-CCE-ECTTTTTTCTTCCEEECCSS--CCCEECGGGG------TTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEE
T ss_pred             Cc-ccc-cChhHhcCcccCCEEECCCC--ccCCcChhHh------cCcccCCEEECCCC-cccccChhhccccccccEEE
Confidence            97 332 22335778999999999998  7777755434      36789999999995 66665 57788999999999


Q ss_pred             ecCCCCCcccCCCCC--cccccEeeccCCch
Q 045021          399 LYDCPKLKYFSEKGL--PSSLLRLYIDECPL  427 (461)
Q Consensus       399 l~~C~~l~~~~~~~~--~~~L~~L~i~~c~~  427 (461)
                      +++ ++++.++...+  .++|++|++++|+.
T Consensus       378 L~~-N~l~~~~~~~~~~l~~L~~L~l~~N~l  407 (455)
T 3v47_A          378 LDT-NQLKSVPDGIFDRLTSLQKIWLHTNPW  407 (455)
T ss_dssp             CCS-SCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred             CCC-CccccCCHhHhccCCcccEEEccCCCc
Confidence            999 78998887533  68999999998753

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.92  E-value=7.6e-23  Score=203.57  Aligned_cols=289  Identities=19%  Similarity=0.226  Sum_probs=165.2

Q ss_pred             CcCEEEecCCcCcccccC--CCCCCCccEEEEeecCCcccc-CcccccCCCCcccEEEeeCCCCCcccccc--CCCCCcc
Q 045021           54 SLREIEICRCHSLVSFPE--VALPSKLKKIEIRECDALKSL-PEAWMCGTNSSLEILKIWSCHSLPYIARV--QLPPSLK  128 (461)
Q Consensus        54 ~L~~L~l~~~~~l~~~~~--~~~l~~L~~L~l~~~~~l~~~-~~~~~~~~~~~L~~L~l~~~~~l~~~~~~--~~~~~L~  128 (461)
                      ++++|+++++ .+..+++  +..+++|++|+++++. +..+ |..+...  ++|+.|+++++ .++.++..  ..+++|+
T Consensus        33 ~l~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~-i~~~~~~~~~~l--~~L~~L~L~~n-~l~~~~~~~~~~l~~L~  107 (477)
T 2id5_A           33 ETRLLDLGKN-RIKTLNQDEFASFPHLEELELNENI-VSAVEPGAFNNL--FNLRTLGLRSN-RLKLIPLGVFTGLSNLT  107 (477)
T ss_dssp             TCSEEECCSS-CCCEECTTTTTTCTTCCEEECTTSC-CCEECTTTTTTC--TTCCEEECCSS-CCCSCCTTSSTTCTTCC
T ss_pred             CCcEEECCCC-ccceECHhHccCCCCCCEEECCCCc-cCEeChhhhhCC--ccCCEEECCCC-cCCccCcccccCCCCCC
Confidence            4444444443 2333322  4444444444444432 3333 2222222  44444444442 23333321  3345555


Q ss_pred             EEecccCCCceEeccCCCcccccccccccCccEEEEecCCCCeecccCCCCcchhhhcccCCCCCCccEEEEecCCchhh
Q 045021          129 RLDISHCDNIRTLTVEDGIQSSSRRYTSYLLEKLEIWDCPSLTCIFSKNELPATLESLEVGNQPPSLKSLNVWSCSKLES  208 (461)
Q Consensus       129 ~L~l~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~  208 (461)
                      +|+++++......+  ..+..      +++|+.|++++ +.+.. ++...+...          ++|+.|++.++.....
T Consensus       108 ~L~Ls~n~i~~~~~--~~~~~------l~~L~~L~l~~-n~l~~-~~~~~~~~l----------~~L~~L~l~~n~l~~~  167 (477)
T 2id5_A          108 KLDISENKIVILLD--YMFQD------LYNLKSLEVGD-NDLVY-ISHRAFSGL----------NSLEQLTLEKCNLTSI  167 (477)
T ss_dssp             EEECTTSCCCEECT--TTTTT------CTTCCEEEECC-TTCCE-ECTTSSTTC----------TTCCEEEEESCCCSSC
T ss_pred             EEECCCCccccCCh--hHccc------cccCCEEECCC-Cccce-eChhhccCC----------CCCCEEECCCCcCccc
Confidence            55555544222223  33333      44666677666 55555 333333222          5677777777533322


Q ss_pred             hHHhhcCCCccceeeccccccceecccccCCCCCccEEEecCCCCCccCCCCCCCCCCcceEeeccCccccccc-cccCC
Q 045021          209 IAERLDNNTSLEMISILWCENLKFLPSGLHNLRQLQEIQLWGCENLVSFPEGGLPCAKLSKLGIYRCERLEALP-KGLHN  287 (461)
Q Consensus       209 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~~~~~~-~~~~~  287 (461)
                      .+..+..+++|+.|++.++......+..+..+++|+.|++++|..+..++.......+|++|++++| .++.+| ..+..
T Consensus       168 ~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~  246 (477)
T 2id5_A          168 PTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHC-NLTAVPYLAVRH  246 (477)
T ss_dssp             CHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESS-CCCSCCHHHHTT
T ss_pred             ChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCC-cccccCHHHhcC
Confidence            3346777788888888876444444456777888888888887777776665555557888888875 455555 36777


Q ss_pred             CCCccEEEecc-cCCCcCCC--CCCCCcceEEeecCchhhHHhhhhcccCCCCcCEEEEecCCCcccccCccccccCCCC
Q 045021          288 LKSLKKLRIGG-KLPSLEED--GLPTNLHFLKIERNMEIWKSMIERGFHKFSSLRHLTIEGCDDDMVSFPPEDRRLGTTL  364 (461)
Q Consensus       288 l~~L~~L~l~~-~~~~l~~~--~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~i~~~~~~~~~~~  364 (461)
                      +++|++|++++ .+..++..  ..+++|++|++++|. +.. .....+..+++|++|++++|  .+..++...+      
T Consensus       247 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~-~~~~~~~~l~~L~~L~L~~N--~l~~~~~~~~------  316 (477)
T 2id5_A          247 LVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQ-LAV-VEPYAFRGLNYLRVLNVSGN--QLTTLEESVF------  316 (477)
T ss_dssp             CTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSC-CSE-ECTTTBTTCTTCCEEECCSS--CCSCCCGGGB------
T ss_pred             ccccCeeECCCCcCCccChhhccccccCCEEECCCCc-cce-ECHHHhcCcccCCEEECCCC--cCceeCHhHc------
Confidence            88888888887 66555543  445678888888776 222 22234677788888888887  6777766533      


Q ss_pred             CCCCCcceeecCCC
Q 045021          365 PLPASLASLTIGDF  378 (461)
Q Consensus       365 ~~~~~L~~L~l~~~  378 (461)
                      ..+++|++|+++++
T Consensus       317 ~~l~~L~~L~l~~N  330 (477)
T 2id5_A          317 HSVGNLETLILDSN  330 (477)
T ss_dssp             SCGGGCCEEECCSS
T ss_pred             CCCcccCEEEccCC
Confidence            24567888888874

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.91  E-value=1.1e-23  Score=207.15  Aligned_cols=346  Identities=25%  Similarity=0.265  Sum_probs=240.3

Q ss_pred             CCccEEEecCCcCCccccccCCCCCCcCEEEecCCcCcccccC-CCCCCCc-------------cEEEEeecCCccccCc
Q 045021           29 CRLEYLILRYCKGLVKLPQSSLSLSSLREIEICRCHSLVSFPE-VALPSKL-------------KKIEIRECDALKSLPE   94 (461)
Q Consensus        29 ~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~-~~~l~~L-------------~~L~l~~~~~l~~~~~   94 (461)
                      .+|++|++++ ..+..+|..++++++|++|++++|.....+|. ++.+.+|             ++|+++++. ++.+|.
T Consensus        11 ~~L~~L~l~~-n~l~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~-l~~lp~   88 (454)
T 1jl5_A           11 TFLQEPLRHS-SNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLG-LSSLPE   88 (454)
T ss_dssp             ------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSC-CSCCCS
T ss_pred             ccchhhhccc-CchhhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCc-cccCCC
Confidence            8899999998 45689999999999999999999864446776 7777765             999999976 777776


Q ss_pred             ccccCCCCcccEEEeeCCCCCccccccCCCCCccEEecccCCCceEeccCCCcccccccccccCccEEEEecCCCCeecc
Q 045021           95 AWMCGTNSSLEILKIWSCHSLPYIARVQLPPSLKRLDISHCDNIRTLTVEDGIQSSSRRYTSYLLEKLEIWDCPSLTCIF  174 (461)
Q Consensus        95 ~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~  174 (461)
                      .     .++|+.|+++++ .++.++.  .+++|++|+++++. +..++  ...         ++|+.|++++ +.++. +
T Consensus        89 ~-----~~~L~~L~l~~n-~l~~lp~--~~~~L~~L~l~~n~-l~~l~--~~~---------~~L~~L~L~~-n~l~~-l  146 (454)
T 1jl5_A           89 L-----PPHLESLVASCN-SLTELPE--LPQSLKSLLVDNNN-LKALS--DLP---------PLLEYLGVSN-NQLEK-L  146 (454)
T ss_dssp             C-----CTTCSEEECCSS-CCSSCCC--CCTTCCEEECCSSC-CSCCC--SCC---------TTCCEEECCS-SCCSS-C
T ss_pred             C-----cCCCCEEEccCC-cCCcccc--ccCCCcEEECCCCc-cCccc--CCC---------CCCCEEECcC-CCCCC-C
Confidence            3     278999999884 6666653  45899999999864 44444  211         3799999999 67776 5


Q ss_pred             cCCCCcchhhhcccCCCCCCccEEEEecCCchhhhHHhhcCCCccceeeccccccceecccccCCCCCccEEEecCCCCC
Q 045021          175 SKNELPATLESLEVGNQPPSLKSLNVWSCSKLESIAERLDNNTSLEMISILWCENLKFLPSGLHNLRQLQEIQLWGCENL  254 (461)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l  254 (461)
                      |.  +...          ++|++|+++++ .+..++.   ...+|++|++++| .+..+| .++.+++|+.|++++| .+
T Consensus       147 p~--~~~l----------~~L~~L~l~~N-~l~~lp~---~~~~L~~L~L~~n-~l~~l~-~~~~l~~L~~L~l~~N-~l  207 (454)
T 1jl5_A          147 PE--LQNS----------SFLKIIDVDNN-SLKKLPD---LPPSLEFIAAGNN-QLEELP-ELQNLPFLTAIYADNN-SL  207 (454)
T ss_dssp             CC--CTTC----------TTCCEEECCSS-CCSCCCC---CCTTCCEEECCSS-CCSSCC-CCTTCTTCCEEECCSS-CC
T ss_pred             cc--cCCC----------CCCCEEECCCC-cCcccCC---CcccccEEECcCC-cCCcCc-cccCCCCCCEEECCCC-cC
Confidence            52  3222          68999999996 4544543   2469999999987 555566 5899999999999998 45


Q ss_pred             ccCCCCCCCCCCcceEeeccCccccccccccCCCCCccEEEecc-cCCCcCCCCCCCCcceEEeecCchhhHHhhhhccc
Q 045021          255 VSFPEGGLPCAKLSKLGIYRCERLEALPKGLHNLKSLKKLRIGG-KLPSLEEDGLPTNLHFLKIERNMEIWKSMIERGFH  333 (461)
Q Consensus       255 ~~l~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~l~~L~~L~l~~-~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~  333 (461)
                      ..++...   ++|++|++++| .++.+|. ++.+++|++|++++ .+..++.  .+++|++|++++|. +.. .+    .
T Consensus       208 ~~l~~~~---~~L~~L~l~~n-~l~~lp~-~~~l~~L~~L~l~~N~l~~l~~--~~~~L~~L~l~~N~-l~~-l~----~  274 (454)
T 1jl5_A          208 KKLPDLP---LSLESIVAGNN-ILEELPE-LQNLPFLTTIYADNNLLKTLPD--LPPSLEALNVRDNY-LTD-LP----E  274 (454)
T ss_dssp             SSCCCCC---TTCCEEECCSS-CCSSCCC-CTTCTTCCEEECCSSCCSSCCS--CCTTCCEEECCSSC-CSC-CC----C
T ss_pred             CcCCCCc---CcccEEECcCC-cCCcccc-cCCCCCCCEEECCCCcCCcccc--cccccCEEECCCCc-ccc-cC----c
Confidence            5555432   48999999997 5567874 89999999999999 7777764  45899999999997 332 11    2


Q ss_pred             CCCCcCEEEEecCCCcccccCccccccCCCCCCCCCcceeecCCCCCCcccccchhhccCCcEEEecCCCCCcccCCCCC
Q 045021          334 KFSSLRHLTIEGCDDDMVSFPPEDRRLGTTLPLPASLASLTIGDFPNLERLSSSIVDLQNLKYLKLYDCPKLKYFSEKGL  413 (461)
Q Consensus       334 ~l~~L~~L~l~~~~~~~~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~L~~L~l~~C~~l~~~~~~~~  413 (461)
                      .+++|++|++++|  .+..++.          .+++|+.|+++++ .+..++.   ..++|++|++++ ++++.+|..  
T Consensus       275 ~~~~L~~L~ls~N--~l~~l~~----------~~~~L~~L~l~~N-~l~~i~~---~~~~L~~L~Ls~-N~l~~lp~~--  335 (454)
T 1jl5_A          275 LPQSLTFLDVSEN--IFSGLSE----------LPPNLYYLNASSN-EIRSLCD---LPPSLEELNVSN-NKLIELPAL--  335 (454)
T ss_dssp             CCTTCCEEECCSS--CCSEESC----------CCTTCCEEECCSS-CCSEECC---CCTTCCEEECCS-SCCSCCCCC--
T ss_pred             ccCcCCEEECcCC--ccCcccC----------cCCcCCEEECcCC-cCCcccC---CcCcCCEEECCC-Ccccccccc--
Confidence            3479999999998  6666654          4479999999994 6766642   125999999999 788887663  


Q ss_pred             cccccEeeccCCchhHHhhcccCccccccccccceEEEcccEEec
Q 045021          414 PSSLLRLYIDECPLIEEKCRKDGEQYWDLLTHIPRVRIHLPVVFD  458 (461)
Q Consensus       414 ~~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  458 (461)
                      +++|++|++++|..- .    ...    ...++..+++.++.+..
T Consensus       336 ~~~L~~L~L~~N~l~-~----lp~----~l~~L~~L~L~~N~l~~  371 (454)
T 1jl5_A          336 PPRLERLIASFNHLA-E----VPE----LPQNLKQLHVEYNPLRE  371 (454)
T ss_dssp             CTTCCEEECCSSCCS-C----CCC----CCTTCCEEECCSSCCSS
T ss_pred             CCcCCEEECCCCccc-c----ccc----hhhhccEEECCCCCCCc
Confidence            589999999998422 1    111    24667777777766543

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.91  E-value=1.9e-22  Score=207.92  Aligned_cols=371  Identities=19%  Similarity=0.207  Sum_probs=218.0

Q ss_pred             cCCccEEEecCCcCCcccc-ccCCCCCCcCEEEecCCcCcccccC--CCCCCCccEEEEeecCCccccCcccccCCCCcc
Q 045021           28 SCRLEYLILRYCKGLVKLP-QSSLSLSSLREIEICRCHSLVSFPE--VALPSKLKKIEIRECDALKSLPEAWMCGTNSSL  104 (461)
Q Consensus        28 ~~~L~~L~l~~~~~l~~l~-~~~~~l~~L~~L~l~~~~~l~~~~~--~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L  104 (461)
                      ++++++|+|++ +.++.++ ..|.++++|++|+|++| .+..+++  ++.+++|++|+++++. ++.+|..++.. +++|
T Consensus        51 p~~~~~LdLs~-N~i~~l~~~~f~~l~~L~~L~Ls~N-~i~~i~~~~f~~L~~L~~L~Ls~N~-l~~l~~~~f~~-L~~L  126 (635)
T 4g8a_A           51 PFSTKNLDLSF-NPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNP-IQSLALGAFSG-LSSL  126 (635)
T ss_dssp             CTTCCEEECTT-SCCCEECTTTTTTCTTCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTCC-CCEECGGGGTT-CTTC
T ss_pred             CcCCCEEEeeC-CCCCCCCHHHHhCCCCCCEEECCCC-cCCCcChhHhcCCCCCCEEEccCCc-CCCCCHHHhcC-CCCC
Confidence            36788888887 5567765 46888888888888886 5666665  6778888888888865 77777654432 3788


Q ss_pred             cEEEeeCCCCCcccccc--CCCCCccEEecccCCCceE--eccCCCcccccccccccCccEEEEecCCCCeecccCCCCc
Q 045021          105 EILKIWSCHSLPYIARV--QLPPSLKRLDISHCDNIRT--LTVEDGIQSSSRRYTSYLLEKLEIWDCPSLTCIFSKNELP  180 (461)
Q Consensus       105 ~~L~l~~~~~l~~~~~~--~~~~~L~~L~l~~~~~~~~--l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~  180 (461)
                      ++|+++++ .++.++..  +.+++|++|+++++. +..  +|  ..+..      +++|+.|++++ +.++. ++...+.
T Consensus       127 ~~L~Ls~N-~l~~l~~~~~~~L~~L~~L~Ls~N~-l~~~~~~--~~~~~------l~~L~~L~L~~-N~l~~-~~~~~l~  194 (635)
T 4g8a_A          127 QKLVAVET-NLASLENFPIGHLKTLKELNVAHNL-IQSFKLP--EYFSN------LTNLEHLDLSS-NKIQS-IYCTDLR  194 (635)
T ss_dssp             CEEECTTS-CCCCSTTCCCTTCTTCCEEECCSSC-CCCCCCC--GGGGG------CTTCCEEECCS-SCCCE-ECGGGGH
T ss_pred             CEEECCCC-cCCCCChhhhhcCcccCeeccccCc-cccCCCc--hhhcc------chhhhhhcccC-ccccc-ccccccc
Confidence            88888874 56665543  667888888888764 222  23  33333      45677777777 55544 2111100


Q ss_pred             ch----------------hhhcccC-CCCCCccEEEEecCCc--------------------------------------
Q 045021          181 AT----------------LESLEVG-NQPPSLKSLNVWSCSK--------------------------------------  205 (461)
Q Consensus       181 ~~----------------~~~~~~~-~~~~~L~~L~l~~~~~--------------------------------------  205 (461)
                      ..                +..+..+ .....++.+.+.++..                                      
T Consensus       195 ~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~  274 (635)
T 4g8a_A          195 VLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSA  274 (635)
T ss_dssp             HHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTT
T ss_pred             chhhhhhhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccc
Confidence            00                0000000 0000111111111100                                      


Q ss_pred             -------------------------------------------hhhhHHhhcCCCccceeecccccccee----------
Q 045021          206 -------------------------------------------LESIAERLDNNTSLEMISILWCENLKF----------  232 (461)
Q Consensus       206 -------------------------------------------l~~~~~~~~~l~~L~~L~l~~~~~~~~----------  232 (461)
                                                                 +..+. .+....+|+.|++.++.....          
T Consensus       275 ~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~  353 (635)
T 4g8a_A          275 LEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVK-DFSYNFGWQHLELVNCKFGQFPTLKLKSLKR  353 (635)
T ss_dssp             TGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECG-GGGSCCCCSEEEEESCEESSCCCCBCTTCCE
T ss_pred             cccccchhhhhhhhhhhcccccchhhhhhhhccccccccccccccccc-ccccchhhhhhhcccccccCcCcccchhhhh
Confidence                                                       00000 111223344444433311000          


Q ss_pred             ---------cccccCCCCCccEEEecCCCCC-------------------------ccCCCCCCCCCCcceEeeccCccc
Q 045021          233 ---------LPSGLHNLRQLQEIQLWGCENL-------------------------VSFPEGGLPCAKLSKLGIYRCERL  278 (461)
Q Consensus       233 ---------~~~~~~~l~~L~~L~l~~~~~l-------------------------~~l~~~~~~~~~L~~L~l~~c~~~  278 (461)
                               .+.....+++|+.++++.+...                         ...+.....++.|+.+++.++...
T Consensus       354 l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~  433 (635)
T 4g8a_A          354 LTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLK  433 (635)
T ss_dssp             EEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEE
T ss_pred             cccccccCCCCcccccccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhcccc
Confidence                     0111224566777777665321                         111222333456666666655444


Q ss_pred             cccc-cccCCCCCccEEEecc-cCCCcCCC--CCCCCcceEEeecCchhhHHhhhhcccCCCCcCEEEEecCCCcccccC
Q 045021          279 EALP-KGLHNLKSLKKLRIGG-KLPSLEED--GLPTNLHFLKIERNMEIWKSMIERGFHKFSSLRHLTIEGCDDDMVSFP  354 (461)
Q Consensus       279 ~~~~-~~~~~l~~L~~L~l~~-~~~~l~~~--~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~i~  354 (461)
                      ...+ ..+..+++++.++++. .+..+...  ..+++++.|++++|...... ....+..+++|++|++++|  ++..++
T Consensus       434 ~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~-~~~~~~~l~~L~~L~Ls~N--~L~~l~  510 (635)
T 4g8a_A          434 QMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENF-LPDIFTELRNLTFLDLSQC--QLEQLS  510 (635)
T ss_dssp             STTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGE-ECSCCTTCTTCCEEECTTS--CCCEEC
T ss_pred             ccccccccccccccccccccccccccccccccccchhhhhhhhhhccccccc-CchhhhhccccCEEECCCC--ccCCcC
Confidence            3332 2456677777777777 44433322  45678999999988754432 2335788899999999998  787776


Q ss_pred             ccccccCCCCCCCCCcceeecCCCCCCcccc-cchhhccCCcEEEecCCCCCcccCCCCC---cccccEeeccCCc
Q 045021          355 PEDRRLGTTLPLPASLASLTIGDFPNLERLS-SSIVDLQNLKYLKLYDCPKLKYFSEKGL---PSSLLRLYIDECP  426 (461)
Q Consensus       355 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~-~~~~~~~~L~~L~l~~C~~l~~~~~~~~---~~~L~~L~i~~c~  426 (461)
                      ...+      ..+++|++|++++ +.+..++ ..+..+++|++|++++ ++++.++...+   +++|++|+++++|
T Consensus       511 ~~~f------~~l~~L~~L~Ls~-N~l~~l~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~l~~l~~~L~~L~L~~Np  578 (635)
T 4g8a_A          511 PTAF------NSLSSLQVLNMSH-NNFFSLDTFPYKCLNSLQVLDYSL-NHIMTSKKQELQHFPSSLAFLNLTQND  578 (635)
T ss_dssp             TTTT------TTCTTCCEEECTT-SCCCBCCCGGGTTCTTCCEEECTT-SCCCBCCSSCTTCCCTTCCEEECTTCC
T ss_pred             hHHH------cCCCCCCEEECCC-CcCCCCChhHHhCCCCCCEEECCC-CcCCCCCHHHHHhhhCcCCEEEeeCCC
Confidence            6545      3678999999999 5777775 5678899999999999 88888876433   5789999998765

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.91  E-value=8.9e-23  Score=200.99  Aligned_cols=317  Identities=16%  Similarity=0.183  Sum_probs=220.7

Q ss_pred             hhhhhhhhcCCccEEEecCCcCCccccccCCCCCCcCEEEecCCcCcccccCCCCCCCccEEEEeecCCccccCcccccC
Q 045021           20 QQQQLCELSCRLEYLILRYCKGLVKLPQSSLSLSSLREIEICRCHSLVSFPEVALPSKLKKIEIRECDALKSLPEAWMCG   99 (461)
Q Consensus        20 ~l~~l~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~   99 (461)
                      .++.+    ++|++|+++++ .+..+| .++.+++|++|++++| .+..+| ++.+++|++|+++++. ++.++  +.. 
T Consensus        37 ~~~~l----~~L~~L~Ls~n-~l~~~~-~l~~l~~L~~L~Ls~n-~l~~~~-~~~l~~L~~L~Ls~N~-l~~~~--~~~-  104 (457)
T 3bz5_A           37 SEEQL----ATLTSLDCHNS-SITDMT-GIEKLTGLTKLICTSN-NITTLD-LSQNTNLTYLACDSNK-LTNLD--VTP-  104 (457)
T ss_dssp             EHHHH----TTCCEEECCSS-CCCCCT-TGGGCTTCSEEECCSS-CCSCCC-CTTCTTCSEEECCSSC-CSCCC--CTT-
T ss_pred             ChhHc----CCCCEEEccCC-CcccCh-hhcccCCCCEEEccCC-cCCeEc-cccCCCCCEEECcCCC-Cceee--cCC-
Confidence            35566    99999999985 567777 5889999999999997 567675 8889999999999976 77665  333 


Q ss_pred             CCCcccEEEeeCCCCCccccccCCCCCccEEecccCCCceEeccCCCcccccccccccCccEEEEecCCCCeecccCCCC
Q 045021          100 TNSSLEILKIWSCHSLPYIARVQLPPSLKRLDISHCDNIRTLTVEDGIQSSSRRYTSYLLEKLEIWDCPSLTCIFSKNEL  179 (461)
Q Consensus       100 ~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~  179 (461)
                       +++|++|+++++ .++.++ ...+++|++|+++++. ++.++    +..      +++|+.|+++++..+.. ++... 
T Consensus       105 -l~~L~~L~L~~N-~l~~l~-~~~l~~L~~L~l~~N~-l~~l~----l~~------l~~L~~L~l~~n~~~~~-~~~~~-  168 (457)
T 3bz5_A          105 -LTKLTYLNCDTN-KLTKLD-VSQNPLLTYLNCARNT-LTEID----VSH------NTQLTELDCHLNKKITK-LDVTP-  168 (457)
T ss_dssp             -CTTCCEEECCSS-CCSCCC-CTTCTTCCEEECTTSC-CSCCC----CTT------CTTCCEEECTTCSCCCC-CCCTT-
T ss_pred             -CCcCCEEECCCC-cCCeec-CCCCCcCCEEECCCCc-cceec----ccc------CCcCCEEECCCCCcccc-ccccc-
Confidence             389999999985 566664 6778899999999865 33333    112      45788888888655554 32111 


Q ss_pred             cchhhhcccCCCCCCccEEEEecCCchhhhHHhhcCCCccceeeccccccceecccccCCCCCccEEEecCCCCCccCCC
Q 045021          180 PATLESLEVGNQPPSLKSLNVWSCSKLESIAERLDNNTSLEMISILWCENLKFLPSGLHNLRQLQEIQLWGCENLVSFPE  259 (461)
Q Consensus       180 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~  259 (461)
                                  +++|+.|+++++ .++.++  +..+++|++|++++| .+..+  .++.+++|+.|++++| .+..++ 
T Consensus       169 ------------l~~L~~L~ls~n-~l~~l~--l~~l~~L~~L~l~~N-~l~~~--~l~~l~~L~~L~Ls~N-~l~~ip-  228 (457)
T 3bz5_A          169 ------------QTQLTTLDCSFN-KITELD--VSQNKLLNRLNCDTN-NITKL--DLNQNIQLTFLDCSSN-KLTEID-  228 (457)
T ss_dssp             ------------CTTCCEEECCSS-CCCCCC--CTTCTTCCEEECCSS-CCSCC--CCTTCTTCSEEECCSS-CCSCCC-
T ss_pred             ------------CCcCCEEECCCC-ccceec--cccCCCCCEEECcCC-cCCee--ccccCCCCCEEECcCC-cccccC-
Confidence                        156888888885 444454  677888888888876 34433  3677788888888887 455565 


Q ss_pred             CCCCCCCcceEeeccCccccccccccCCCCCccEEEecccCCCcCCCCCCCCcceEEeecCchhhHHhhhhcccCCCCcC
Q 045021          260 GGLPCAKLSKLGIYRCERLEALPKGLHNLKSLKKLRIGGKLPSLEEDGLPTNLHFLKIERNMEIWKSMIERGFHKFSSLR  339 (461)
Q Consensus       260 ~~~~~~~L~~L~l~~c~~~~~~~~~~~~l~~L~~L~l~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~  339 (461)
                       ...+++|++|++++| .++.+|  ++.+++|+.|++++           .+|+.|++++|.... ..   .+..+++|+
T Consensus       229 -~~~l~~L~~L~l~~N-~l~~~~--~~~l~~L~~L~l~~-----------n~L~~L~l~~n~~~~-~~---~~~~l~~L~  289 (457)
T 3bz5_A          229 -VTPLTQLTYFDCSVN-PLTELD--VSTLSKLTTLHCIQ-----------TDLLEIDLTHNTQLI-YF---QAEGCRKIK  289 (457)
T ss_dssp             -CTTCTTCSEEECCSS-CCSCCC--CTTCTTCCEEECTT-----------CCCSCCCCTTCTTCC-EE---ECTTCTTCC
T ss_pred             -ccccCCCCEEEeeCC-cCCCcC--HHHCCCCCEEeccC-----------CCCCEEECCCCccCC-cc---cccccccCC
Confidence             445668888888875 444444  55677888877643           356667777776332 12   246778899


Q ss_pred             EEEEecCCCcccccCccccc-cC-CCCCCCCCcceeecCCCCCCcccccchhhccCCcEEEecCCCCCcccC
Q 045021          340 HLTIEGCDDDMVSFPPEDRR-LG-TTLPLPASLASLTIGDFPNLERLSSSIVDLQNLKYLKLYDCPKLKYFS  409 (461)
Q Consensus       340 ~L~l~~~~~~~~~i~~~~~~-~~-~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~L~~L~l~~C~~l~~~~  409 (461)
                      .|++++| ...+.++.. .. .. -.....++|++|++++ +.++.++  +..+++|+.|++++ ++++.++
T Consensus       290 ~L~Ls~n-~~l~~l~~~-~~~L~~L~l~~~~~L~~L~L~~-N~l~~l~--l~~l~~L~~L~l~~-N~l~~l~  355 (457)
T 3bz5_A          290 ELDVTHN-TQLYLLDCQ-AAGITELDLSQNPKLVYLYLNN-TELTELD--VSHNTKLKSLSCVN-AHIQDFS  355 (457)
T ss_dssp             CCCCTTC-TTCCEEECT-TCCCSCCCCTTCTTCCEEECTT-CCCSCCC--CTTCTTCSEEECCS-SCCCBCT
T ss_pred             EEECCCC-cccceeccC-CCcceEechhhcccCCEEECCC-Ccccccc--cccCCcCcEEECCC-CCCCCcc
Confidence            9999987 445555432 10 00 0112446888888888 4677763  78899999999999 7887654

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.91  E-value=8.5e-23  Score=207.35  Aligned_cols=355  Identities=16%  Similarity=0.139  Sum_probs=232.2

Q ss_pred             hhhhhhhhhcCCccEEEecCCcCCccc-cccCCCCCCcCEEEecCCcCcccccCCCCCCCccEEEEeecCCccccC--cc
Q 045021           19 DQQQQLCELSCRLEYLILRYCKGLVKL-PQSSLSLSSLREIEICRCHSLVSFPEVALPSKLKKIEIRECDALKSLP--EA   95 (461)
Q Consensus        19 ~~l~~l~~~~~~L~~L~l~~~~~l~~l-~~~~~~l~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~--~~   95 (461)
                      ..+..+    ++|++|+++++ .+..+ |..+.++++|++|++++| .+..+|.. .+++|++|+++++. +..++  ..
T Consensus        70 ~~~~~l----~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~-~l~~L~~L~Ls~N~-l~~l~~p~~  141 (562)
T 3a79_B           70 PDISFL----SELRVLRLSHN-RIRSLDFHVFLFNQDLEYLDVSHN-RLQNISCC-PMASLRHLDLSFND-FDVLPVCKE  141 (562)
T ss_dssp             GGTTTC----TTCCEEECCSC-CCCEECTTTTTTCTTCCEEECTTS-CCCEECSC-CCTTCSEEECCSSC-CSBCCCCGG
T ss_pred             hhhccC----CCccEEECCCC-CCCcCCHHHhCCCCCCCEEECCCC-cCCccCcc-ccccCCEEECCCCC-ccccCchHh
Confidence            457777    99999999995 45666 678999999999999997 57788877 89999999999976 77654  56


Q ss_pred             cccCCCCcccEEEeeCCCCCccccccCCCCCc--cEEecccCCC--ceEeccCCCccccc--------------------
Q 045021           96 WMCGTNSSLEILKIWSCHSLPYIARVQLPPSL--KRLDISHCDN--IRTLTVEDGIQSSS--------------------  151 (461)
Q Consensus        96 ~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L--~~L~l~~~~~--~~~l~~~~~~~~~~--------------------  151 (461)
                      +...  ++|++|+++++ .++.. ....+++|  +.|+++++..  ....+  ..+....                    
T Consensus       142 ~~~l--~~L~~L~L~~n-~l~~~-~~~~l~~L~L~~L~L~~n~l~~~~~~~--~~l~~l~~~~l~l~l~~n~~~~~~~~~  215 (562)
T 3a79_B          142 FGNL--TKLTFLGLSAA-KFRQL-DLLPVAHLHLSCILLDLVSYHIKGGET--ESLQIPNTTVLHLVFHPNSLFSVQVNM  215 (562)
T ss_dssp             GGGC--TTCCEEEEECS-BCCTT-TTGGGTTSCEEEEEEEESSCCCCSSSC--CEEEECCEEEEEEEECSSSCCCCCCEE
T ss_pred             hccc--CcccEEecCCC-ccccC-chhhhhhceeeEEEeecccccccccCc--ccccccCcceEEEEecCccchhhhhhh
Confidence            6665  99999999984 44432 22334455  9999998753  11112  2211100                    


Q ss_pred             ccccccCccEEEEecCC-----------------CCeec-ccCCCCcc-hhhhcccCCCCCCccEEEEecCCchhhhHHh
Q 045021          152 RRYTSYLLEKLEIWDCP-----------------SLTCI-FSKNELPA-TLESLEVGNQPPSLKSLNVWSCSKLESIAER  212 (461)
Q Consensus       152 ~~~~~~~L~~L~l~~~~-----------------~l~~~-~~~~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~  212 (461)
                      ....+++|+.+++++..                 .++.+ +....+.. .+..+......++|++|++.++...+.+|..
T Consensus       216 ~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~  295 (562)
T 3a79_B          216 SVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDRE  295 (562)
T ss_dssp             EESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCC
T ss_pred             cccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccch
Confidence            00113356666666521                 00000 00000000 0000000001125666666664322233322


Q ss_pred             h-----cCC--------------------------CccceeeccccccceecccccCCCCCccEEEecCCCCCccCCCCC
Q 045021          213 L-----DNN--------------------------TSLEMISILWCENLKFLPSGLHNLRQLQEIQLWGCENLVSFPEGG  261 (461)
Q Consensus       213 ~-----~~l--------------------------~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~  261 (461)
                      +     ..+                          .+|++|+++++.. ...+ ....+++|++|++++|......+...
T Consensus       296 ~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~-~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~  373 (562)
T 3a79_B          296 EFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPF-IHMV-CPPSPSSFTFLNFTQNVFTDSVFQGC  373 (562)
T ss_dssp             CCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCC-CCCC-CCSSCCCCCEEECCSSCCCTTTTTTC
T ss_pred             hhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCc-cccc-CccCCCCceEEECCCCccccchhhhh
Confidence            2     122                          3466666666532 1111 12678999999999985544466666


Q ss_pred             CCCCCcceEeeccCccccc---cccccCCCCCccEEEecc-cCCC-cCCC--CCCCCcceEEeecCchhhHHhhhhcccC
Q 045021          262 LPCAKLSKLGIYRCERLEA---LPKGLHNLKSLKKLRIGG-KLPS-LEED--GLPTNLHFLKIERNMEIWKSMIERGFHK  334 (461)
Q Consensus       262 ~~~~~L~~L~l~~c~~~~~---~~~~~~~l~~L~~L~l~~-~~~~-l~~~--~~~~~L~~L~l~~~~~l~~~~~~~~~~~  334 (461)
                      ..+++|++|++++| .++.   +|..+..+++|++|++++ .+.. ++..  ..+++|++|++++|. +++..    ...
T Consensus       374 ~~l~~L~~L~L~~N-~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~----~~~  447 (562)
T 3a79_B          374 STLKRLQTLILQRN-GLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNM-LTGSV----FRC  447 (562)
T ss_dssp             CSCSSCCEEECCSS-CCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSC-CCGGG----GSS
T ss_pred             cccCCCCEEECCCC-CcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCC-CCcch----hhh
Confidence            77889999999996 4444   345689999999999999 6665 6653  556899999999998 33222    234


Q ss_pred             C-CCcCEEEEecCCCcccccCccccccCCCCCCCCCcceeecCCCCCCcccccc-hhhccCCcEEEecCCCCCc
Q 045021          335 F-SSLRHLTIEGCDDDMVSFPPEDRRLGTTLPLPASLASLTIGDFPNLERLSSS-IVDLQNLKYLKLYDCPKLK  406 (461)
Q Consensus       335 l-~~L~~L~l~~~~~~~~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~-~~~~~~L~~L~l~~C~~l~  406 (461)
                      + ++|++|++++|  ++..+|.. .      ..+++|++|++++ +.++.+|.. +..+++|+.|++++ +.+.
T Consensus       448 l~~~L~~L~L~~N--~l~~ip~~-~------~~l~~L~~L~L~~-N~l~~l~~~~~~~l~~L~~L~l~~-N~~~  510 (562)
T 3a79_B          448 LPPKVKVLDLHNN--RIMSIPKD-V------THLQALQELNVAS-NQLKSVPDGVFDRLTSLQYIWLHD-NPWD  510 (562)
T ss_dssp             CCTTCSEEECCSS--CCCCCCTT-T------TSSCCCSEEECCS-SCCCCCCTTSTTTCTTCCCEECCS-CCBC
T ss_pred             hcCcCCEEECCCC--cCcccChh-h------cCCCCCCEEECCC-CCCCCCCHHHHhcCCCCCEEEecC-CCcC
Confidence            4 69999999998  88888886 3      2678999999999 588899866 88999999999999 4443

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.91  E-value=5e-23  Score=199.40  Aligned_cols=302  Identities=15%  Similarity=0.150  Sum_probs=189.3

Q ss_pred             CCCCcCEEEecCCcCcccccC--CCCCCCccEEEEeecCCccccCc-ccccCCCCcccEEEeeCCCCCcccccc--CCCC
Q 045021           51 SLSSLREIEICRCHSLVSFPE--VALPSKLKKIEIRECDALKSLPE-AWMCGTNSSLEILKIWSCHSLPYIARV--QLPP  125 (461)
Q Consensus        51 ~l~~L~~L~l~~~~~l~~~~~--~~~l~~L~~L~l~~~~~l~~~~~-~~~~~~~~~L~~L~l~~~~~l~~~~~~--~~~~  125 (461)
                      .++++++|+++++ .+..+|.  +..+++|++|+++++. +..++. .+...  ++|++|+++++ .++.++..  ..++
T Consensus        43 ~l~~l~~l~l~~~-~l~~l~~~~~~~l~~L~~L~L~~n~-i~~~~~~~~~~l--~~L~~L~L~~n-~l~~~~~~~~~~l~  117 (390)
T 3o6n_A           43 TLNNQKIVTFKNS-TMRKLPAALLDSFRQVELLNLNDLQ-IEEIDTYAFAYA--HTIQKLYMGFN-AIRYLPPHVFQNVP  117 (390)
T ss_dssp             GGCCCSEEEEESC-EESEECTHHHHHCCCCSEEECTTSC-CCEECTTTTTTC--TTCCEEECCSS-CCCCCCTTTTTTCT
T ss_pred             ccCCceEEEecCC-chhhCChhHhcccccCcEEECCCCc-ccccChhhccCC--CCcCEEECCCC-CCCcCCHHHhcCCC
Confidence            4567788888775 4666766  5667788888887765 565554 33333  67777777764 34443322  4455


Q ss_pred             CccEEecccCCCceEeccCCCc-ccccccccccCccEEEEecCCCCeecccCCCCcchhhhcccCCCCCCccEEEEecCC
Q 045021          126 SLKRLDISHCDNIRTLTVEDGI-QSSSRRYTSYLLEKLEIWDCPSLTCIFSKNELPATLESLEVGNQPPSLKSLNVWSCS  204 (461)
Q Consensus       126 ~L~~L~l~~~~~~~~l~~~~~~-~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  204 (461)
                      +|++|+++++. +..+|  ... ..      .++|+.|++++ +.++.                                
T Consensus       118 ~L~~L~L~~n~-l~~l~--~~~~~~------l~~L~~L~L~~-n~l~~--------------------------------  155 (390)
T 3o6n_A          118 LLTVLVLERND-LSSLP--RGIFHN------TPKLTTLSMSN-NNLER--------------------------------  155 (390)
T ss_dssp             TCCEEECCSSC-CCCCC--TTTTTT------CTTCCEEECCS-SCCCB--------------------------------
T ss_pred             CCCEEECCCCc-cCcCC--HHHhcC------CCCCcEEECCC-CccCc--------------------------------
Confidence            66666666543 33343  322 12      33455555544 33333                                


Q ss_pred             chhhhHHhhcCCCccceeeccccccceecccccCCCCCccEEEecCCCCCccCCCCCCCCCCcceEeeccCccccccccc
Q 045021          205 KLESIAERLDNNTSLEMISILWCENLKFLPSGLHNLRQLQEIQLWGCENLVSFPEGGLPCAKLSKLGIYRCERLEALPKG  284 (461)
Q Consensus       205 ~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~~~~~~~~  284 (461)
                         ..+..+..+++|++|++++|. +..+  .+..+++|+.+++++| .+..++    ..++|++|++++| .+..+|. 
T Consensus       156 ---~~~~~~~~l~~L~~L~l~~n~-l~~~--~~~~l~~L~~L~l~~n-~l~~~~----~~~~L~~L~l~~n-~l~~~~~-  222 (390)
T 3o6n_A          156 ---IEDDTFQATTSLQNLQLSSNR-LTHV--DLSLIPSLFHANVSYN-LLSTLA----IPIAVEELDASHN-SINVVRG-  222 (390)
T ss_dssp             ---CCTTTTSSCTTCCEEECCSSC-CSBC--CGGGCTTCSEEECCSS-CCSEEE----CCSSCSEEECCSS-CCCEEEC-
T ss_pred             ---cChhhccCCCCCCEEECCCCc-CCcc--ccccccccceeecccc-cccccC----CCCcceEEECCCC-eeeeccc-
Confidence               222344555566666665542 2222  1344566666666665 223221    1236677777664 3333332 


Q ss_pred             cCCCCCccEEEecc-cCCCcCCCCCCCCcceEEeecCchhhHHhhhhcccCCCCcCEEEEecCCCcccccCccccccCCC
Q 045021          285 LHNLKSLKKLRIGG-KLPSLEEDGLPTNLHFLKIERNMEIWKSMIERGFHKFSSLRHLTIEGCDDDMVSFPPEDRRLGTT  363 (461)
Q Consensus       285 ~~~l~~L~~L~l~~-~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~i~~~~~~~~~~  363 (461)
                       ...++|++|++++ .+...+....+++|++|++++|. +... ....+..+++|++|++++|  .+..++.. .     
T Consensus       223 -~~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n~-l~~~-~~~~~~~l~~L~~L~L~~n--~l~~~~~~-~-----  291 (390)
T 3o6n_A          223 -PVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNE-LEKI-MYHPFVKMQRLERLYISNN--RLVALNLY-G-----  291 (390)
T ss_dssp             -CCCSSCCEEECCSSCCCCCGGGGGCTTCSEEECCSSC-CCEE-ESGGGTTCSSCCEEECCSS--CCCEEECS-S-----
T ss_pred             -cccccccEEECCCCCCcccHHHcCCCCccEEECCCCc-CCCc-ChhHccccccCCEEECCCC--cCcccCcc-c-----
Confidence             2346777777777 55555555566788888888886 3222 2235778999999999998  77777664 3     


Q ss_pred             CCCCCCcceeecCCCCCCcccccchhhccCCcEEEecCCCCCcccCCCCCcccccEeeccCCch
Q 045021          364 LPLPASLASLTIGDFPNLERLSSSIVDLQNLKYLKLYDCPKLKYFSEKGLPSSLLRLYIDECPL  427 (461)
Q Consensus       364 ~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~L~~L~l~~C~~l~~~~~~~~~~~L~~L~i~~c~~  427 (461)
                       ..+++|++|+++++ .+..++..+..+++|++|++++ +.++.++.. .+++|++|++++++.
T Consensus       292 -~~l~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~L~~-N~i~~~~~~-~~~~L~~L~l~~N~~  351 (390)
T 3o6n_A          292 -QPIPTLKVLDLSHN-HLLHVERNQPQFDRLENLYLDH-NSIVTLKLS-THHTLKNLTLSHNDW  351 (390)
T ss_dssp             -SCCTTCCEEECCSS-CCCCCGGGHHHHTTCSEEECCS-SCCCCCCCC-TTCCCSEEECCSSCE
T ss_pred             -CCCCCCCEEECCCC-cceecCccccccCcCCEEECCC-CccceeCch-hhccCCEEEcCCCCc
Confidence             35779999999995 7888888888999999999999 678888753 358999999999875

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.90  E-value=2.1e-22  Score=200.30  Aligned_cols=310  Identities=20%  Similarity=0.223  Sum_probs=197.6

Q ss_pred             CEEEecCCcCcccccCCCCCCCccEEEEeecCCccccCc-ccccCCCCcccEEEeeCCCCCccccc--cCCCCCccEEec
Q 045021           56 REIEICRCHSLVSFPEVALPSKLKKIEIRECDALKSLPE-AWMCGTNSSLEILKIWSCHSLPYIAR--VQLPPSLKRLDI  132 (461)
Q Consensus        56 ~~L~l~~~~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~~~~~~L~~L~l~~~~~l~~~~~--~~~~~~L~~L~l  132 (461)
                      +.++.++. .+..+|. ...+++++|+++++. ++.++. .+...  ++|++|+++++ .++.+..  ...+++|++|++
T Consensus        14 ~~v~c~~~-~l~~ip~-~~~~~l~~L~L~~n~-l~~~~~~~~~~l--~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L   87 (477)
T 2id5_A           14 RAVLCHRK-RFVAVPE-GIPTETRLLDLGKNR-IKTLNQDEFASF--PHLEELELNEN-IVSAVEPGAFNNLFNLRTLGL   87 (477)
T ss_dssp             TEEECCSC-CCSSCCS-CCCTTCSEEECCSSC-CCEECTTTTTTC--TTCCEEECTTS-CCCEECTTTTTTCTTCCEEEC
T ss_pred             CEEEeCCC-CcCcCCC-CCCCCCcEEECCCCc-cceECHhHccCC--CCCCEEECCCC-ccCEeChhhhhCCccCCEEEC
Confidence            45666553 5666764 345788999999865 776654 34333  88999999885 5555533  266788888888


Q ss_pred             ccCCCceEeccCCC-cccccccccccCccEEEEecCCCCeecccCCCCcchhhhcccCCCCCCccEEEEecCCchhhhHH
Q 045021          133 SHCDNIRTLTVEDG-IQSSSRRYTSYLLEKLEIWDCPSLTCIFSKNELPATLESLEVGNQPPSLKSLNVWSCSKLESIAE  211 (461)
Q Consensus       133 ~~~~~~~~l~~~~~-~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~  211 (461)
                      +++. +..++  .. +..      +++|+.|++++ +.+.. .....+...          ++|+.|++.++......+.
T Consensus        88 ~~n~-l~~~~--~~~~~~------l~~L~~L~Ls~-n~i~~-~~~~~~~~l----------~~L~~L~l~~n~l~~~~~~  146 (477)
T 2id5_A           88 RSNR-LKLIP--LGVFTG------LSNLTKLDISE-NKIVI-LLDYMFQDL----------YNLKSLEVGDNDLVYISHR  146 (477)
T ss_dssp             CSSC-CCSCC--TTSSTT------CTTCCEEECTT-SCCCE-ECTTTTTTC----------TTCCEEEECCTTCCEECTT
T ss_pred             CCCc-CCccC--cccccC------CCCCCEEECCC-Ccccc-CChhHcccc----------ccCCEEECCCCccceeChh
Confidence            8864 45555  33 223      55788888887 66666 333333322          5788888877543333344


Q ss_pred             hhcCCCccceeeccccccceecc-cccCCCCCccEEEecCCCCCccCCC-CCCCCCCcceEeeccCccccccccccCCCC
Q 045021          212 RLDNNTSLEMISILWCENLKFLP-SGLHNLRQLQEIQLWGCENLVSFPE-GGLPCAKLSKLGIYRCERLEALPKGLHNLK  289 (461)
Q Consensus       212 ~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~c~~~~~~~~~~~~l~  289 (461)
                      .+..+++|++|++++| .+..++ ..+..+++|+.|++++|. +..++. ....+++|++|++++|.....++.......
T Consensus       147 ~~~~l~~L~~L~l~~n-~l~~~~~~~l~~l~~L~~L~l~~n~-i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~  224 (477)
T 2id5_A          147 AFSGLNSLEQLTLEKC-NLTSIPTEALSHLHGLIVLRLRHLN-INAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGL  224 (477)
T ss_dssp             SSTTCTTCCEEEEESC-CCSSCCHHHHTTCTTCCEEEEESCC-CCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTC
T ss_pred             hccCCCCCCEEECCCC-cCcccChhHhcccCCCcEEeCCCCc-CcEeChhhcccCcccceeeCCCCccccccCcccccCc
Confidence            6777788888888876 343333 456777888888888763 333333 445566788888887777776666555566


Q ss_pred             CccEEEecc-cCCCcCC--CCCCCCcceEEeecCchhhHHhhhhcccCCCCcCEEEEecCCCcccccCccccccCCCCCC
Q 045021          290 SLKKLRIGG-KLPSLEE--DGLPTNLHFLKIERNMEIWKSMIERGFHKFSSLRHLTIEGCDDDMVSFPPEDRRLGTTLPL  366 (461)
Q Consensus       290 ~L~~L~l~~-~~~~l~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~i~~~~~~~~~~~~~  366 (461)
                      +|++|++++ .+..++.  ...+++|++|++++|. +. ......+..+++|++|++++|  .+..+....+      ..
T Consensus       225 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~-~~~~~~~~~l~~L~~L~L~~n--~l~~~~~~~~------~~  294 (477)
T 2id5_A          225 NLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNP-IS-TIEGSMLHELLRLQEIQLVGG--QLAVVEPYAF------RG  294 (477)
T ss_dssp             CCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSC-CC-EECTTSCTTCTTCCEEECCSS--CCSEECTTTB------TT
T ss_pred             cccEEECcCCcccccCHHHhcCccccCeeECCCCc-CC-ccChhhccccccCCEEECCCC--ccceECHHHh------cC
Confidence            777777777 6666653  2455677777777776 22 222234566777777777776  5555544323      25


Q ss_pred             CCCcceeecCCCCCCcccc-cchhhccCCcEEEecCCCCCc
Q 045021          367 PASLASLTIGDFPNLERLS-SSIVDLQNLKYLKLYDCPKLK  406 (461)
Q Consensus       367 ~~~L~~L~l~~~~~l~~i~-~~~~~~~~L~~L~l~~C~~l~  406 (461)
                      +++|+.|+++++ .++.++ ..+..+++|++|++.+ +.++
T Consensus       295 l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~-N~l~  333 (477)
T 2id5_A          295 LNYLRVLNVSGN-QLTTLEESVFHSVGNLETLILDS-NPLA  333 (477)
T ss_dssp             CTTCCEEECCSS-CCSCCCGGGBSCGGGCCEEECCS-SCEE
T ss_pred             cccCCEEECCCC-cCceeCHhHcCCCcccCEEEccC-CCcc
Confidence            567777777773 566665 3456677777777777 4443

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.90  E-value=3.2e-22  Score=206.19  Aligned_cols=378  Identities=16%  Similarity=0.155  Sum_probs=231.4

Q ss_pred             cCCccccccCCCCCCcCEEEecCCcCcccccC--CCCCCCccEEEEeecCCccccCcccccCCCCcccEEEeeCCCCCcc
Q 045021           40 KGLVKLPQSSLSLSSLREIEICRCHSLVSFPE--VALPSKLKKIEIRECDALKSLPEAWMCGTNSSLEILKIWSCHSLPY  117 (461)
Q Consensus        40 ~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~--~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~  117 (461)
                      .+++.+|..++  +++++|+|+++ .++.+++  +..+++|++|++++|. ++.+++..+.. +++|++|+++++ .++.
T Consensus        41 ~~l~~vP~~lp--~~~~~LdLs~N-~i~~l~~~~f~~l~~L~~L~Ls~N~-i~~i~~~~f~~-L~~L~~L~Ls~N-~l~~  114 (635)
T 4g8a_A           41 LNFYKIPDNLP--FSTKNLDLSFN-PLRHLGSYSFFSFPELQVLDLSRCE-IQTIEDGAYQS-LSHLSTLILTGN-PIQS  114 (635)
T ss_dssp             SCCSSCCSSSC--TTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTCC-CCEECTTTTTT-CTTCCEEECTTC-CCCE
T ss_pred             CCcCccCCCCC--cCCCEEEeeCC-CCCCCCHHHHhCCCCCCEEECCCCc-CCCcChhHhcC-CCCCCEEEccCC-cCCC
Confidence            35678887665  58999999996 6888876  8899999999999976 88887764432 499999999995 6777


Q ss_pred             cccc--CCCCCccEEecccCCCceEeccCCC-cccccccccccCccEEEEecCCCCeecccCCCCcchhhhcccCCCCCC
Q 045021          118 IARV--QLPPSLKRLDISHCDNIRTLTVEDG-IQSSSRRYTSYLLEKLEIWDCPSLTCIFSKNELPATLESLEVGNQPPS  194 (461)
Q Consensus       118 ~~~~--~~~~~L~~L~l~~~~~~~~l~~~~~-~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  194 (461)
                      ++..  ..+++|++|+++++. ++.++  .. +..      +++|+.|++++ +.++. ++......         .+++
T Consensus       115 l~~~~f~~L~~L~~L~Ls~N~-l~~l~--~~~~~~------L~~L~~L~Ls~-N~l~~-~~~~~~~~---------~l~~  174 (635)
T 4g8a_A          115 LALGAFSGLSSLQKLVAVETN-LASLE--NFPIGH------LKTLKELNVAH-NLIQS-FKLPEYFS---------NLTN  174 (635)
T ss_dssp             ECGGGGTTCTTCCEEECTTSC-CCCST--TCCCTT------CTTCCEEECCS-SCCCC-CCCCGGGG---------GCTT
T ss_pred             CCHHHhcCCCCCCEEECCCCc-CCCCC--hhhhhc------CcccCeecccc-Ccccc-CCCchhhc---------cchh
Confidence            7654  788999999999975 55555  43 343      66899999999 67655 32211111         1157


Q ss_pred             ccEEEEecCCchhhhHHhhcC---------------------------CCccceeecccccc------------------
Q 045021          195 LKSLNVWSCSKLESIAERLDN---------------------------NTSLEMISILWCEN------------------  229 (461)
Q Consensus       195 L~~L~l~~~~~l~~~~~~~~~---------------------------l~~L~~L~l~~~~~------------------  229 (461)
                      |++|++.++......+..+..                           ...++.+++.++..                  
T Consensus       175 L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~  254 (635)
T 4g8a_A          175 LEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVH  254 (635)
T ss_dssp             CCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEE
T ss_pred             hhhhcccCccccccccccccchhhhhhhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccc
Confidence            888888775321111111110                           00111111111100                  


Q ss_pred             ------------c----------------------------eec----------------------ccccCCCCCccEEE
Q 045021          230 ------------L----------------------------KFL----------------------PSGLHNLRQLQEIQ  247 (461)
Q Consensus       230 ------------~----------------------------~~~----------------------~~~~~~l~~L~~L~  247 (461)
                                  +                            ...                      ...+....+|+.|+
T Consensus       255 ~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~  334 (635)
T 4g8a_A          255 RLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLE  334 (635)
T ss_dssp             EEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEE
T ss_pred             cccccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccccccccchhhhhhh
Confidence                        0                            000                      00112234556666


Q ss_pred             ecCCCCCccCC--------------------CCCCCCCCcceEeeccCcccc--ccc-----------------------
Q 045021          248 LWGCENLVSFP--------------------EGGLPCAKLSKLGIYRCERLE--ALP-----------------------  282 (461)
Q Consensus       248 l~~~~~l~~l~--------------------~~~~~~~~L~~L~l~~c~~~~--~~~-----------------------  282 (461)
                      +.++. +..++                    .....+++|+.++++++....  ..+                       
T Consensus       335 l~~~~-~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~  413 (635)
T 4g8a_A          335 LVNCK-FGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMS  413 (635)
T ss_dssp             EESCE-ESSCCCCBCTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEEC
T ss_pred             ccccc-ccCcCcccchhhhhcccccccCCCCcccccccccccchhhccccccccccccchhhhhhhhhhhcccccccccc
Confidence            65542 11110                    111235678888887653211  112                       


Q ss_pred             cccCCCCCccEEEecc-cCC---CcCCCCCCCCcceEEeecCchhhHHhhhhcccCCCCcCEEEEecCCCcccccCcccc
Q 045021          283 KGLHNLKSLKKLRIGG-KLP---SLEEDGLPTNLHFLKIERNMEIWKSMIERGFHKFSSLRHLTIEGCDDDMVSFPPEDR  358 (461)
Q Consensus       283 ~~~~~l~~L~~L~l~~-~~~---~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~i~~~~~  358 (461)
                      ..+..+++|+.+++.. ...   .......+++++.+++++|....  .....+..+++|+.|++++| .....+....+
T Consensus       414 ~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~--~~~~~~~~~~~L~~L~Ls~N-~~~~~~~~~~~  490 (635)
T 4g8a_A          414 SNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV--AFNGIFNGLSSLEVLKMAGN-SFQENFLPDIF  490 (635)
T ss_dssp             SCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEE--CCTTTTTTCTTCCEEECTTC-EEGGGEECSCC
T ss_pred             ccccccccccchhhhhcccccccccccccccccccccccccccccc--ccccccccchhhhhhhhhhc-ccccccCchhh
Confidence            2234455555555554 111   11112334566777776665221  22234567788888888886 22333333224


Q ss_pred             ccCCCCCCCCCcceeecCCCCCCccc-ccchhhccCCcEEEecCCCCCcccCCCCC--cccccEeeccCCchhHHhhccc
Q 045021          359 RLGTTLPLPASLASLTIGDFPNLERL-SSSIVDLQNLKYLKLYDCPKLKYFSEKGL--PSSLLRLYIDECPLIEEKCRKD  435 (461)
Q Consensus       359 ~~~~~~~~~~~L~~L~l~~~~~l~~i-~~~~~~~~~L~~L~l~~C~~l~~~~~~~~--~~~L~~L~i~~c~~l~~~~~~~  435 (461)
                            ..+++|++|++++| .++.+ |..+..+++|++|++++ ++++.++...+  +++|++|+++++...     ..
T Consensus       491 ------~~l~~L~~L~Ls~N-~L~~l~~~~f~~l~~L~~L~Ls~-N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-----~~  557 (635)
T 4g8a_A          491 ------TELRNLTFLDLSQC-QLEQLSPTAFNSLSSLQVLNMSH-NNFFSLDTFPYKCLNSLQVLDYSLNHIM-----TS  557 (635)
T ss_dssp             ------TTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTT-SCCCBCCCGGGTTCTTCCEEECTTSCCC-----BC
T ss_pred             ------hhccccCEEECCCC-ccCCcChHHHcCCCCCCEEECCC-CcCCCCChhHHhCCCCCCEEECCCCcCC-----CC
Confidence                  36789999999995 67766 46788999999999999 78998876433  589999999998532     11


Q ss_pred             Cccccccc-cccceEEEcccEEecCC
Q 045021          436 GEQYWDLL-THIPRVRIHLPVVFDDS  460 (461)
Q Consensus       436 ~~~~~~~~-~~~~~~~~~~~~~~~~~  460 (461)
                      ..+.+..+ ..+..+++.+|+..|+|
T Consensus       558 ~~~~l~~l~~~L~~L~L~~Np~~C~C  583 (635)
T 4g8a_A          558 KKQELQHFPSSLAFLNLTQNDFACTC  583 (635)
T ss_dssp             CSSCTTCCCTTCCEEECTTCCBCCSG
T ss_pred             CHHHHHhhhCcCCEEEeeCCCCcccC
Confidence            22223333 57889999999999886

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.89  E-value=7e-22  Score=194.60  Aligned_cols=284  Identities=18%  Similarity=0.169  Sum_probs=195.5

Q ss_pred             hhhhhhhhcCCccEEEecCCcCCccccccCCCCCCcCEEEecCCcCcccccCCCCCCCccEEEEeecCCccccCcccccC
Q 045021           20 QQQQLCELSCRLEYLILRYCKGLVKLPQSSLSLSSLREIEICRCHSLVSFPEVALPSKLKKIEIRECDALKSLPEAWMCG   99 (461)
Q Consensus        20 ~l~~l~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~   99 (461)
                      .+..+    ++|++|+++++ .+..++  ++.+++|++|++++| .+..++ ++.+++|++|+++++. ++.++  +.. 
T Consensus        59 ~l~~l----~~L~~L~Ls~n-~l~~~~--~~~l~~L~~L~Ls~N-~l~~~~-~~~l~~L~~L~L~~N~-l~~l~--~~~-  125 (457)
T 3bz5_A           59 GIEKL----TGLTKLICTSN-NITTLD--LSQNTNLTYLACDSN-KLTNLD-VTPLTKLTYLNCDTNK-LTKLD--VSQ-  125 (457)
T ss_dssp             TGGGC----TTCSEEECCSS-CCSCCC--CTTCTTCSEEECCSS-CCSCCC-CTTCTTCCEEECCSSC-CSCCC--CTT-
T ss_pred             hhccc----CCCCEEEccCC-cCCeEc--cccCCCCCEEECcCC-CCceee-cCCCCcCCEEECCCCc-CCeec--CCC-
Confidence            36666    99999999995 467775  889999999999997 566665 8889999999999975 77765  333 


Q ss_pred             CCCcccEEEeeCCCCCccccccCCCCCccEEecccCCCceEeccCCCcccccccccccCccEEEEecCCCCeecccCCCC
Q 045021          100 TNSSLEILKIWSCHSLPYIARVQLPPSLKRLDISHCDNIRTLTVEDGIQSSSRRYTSYLLEKLEIWDCPSLTCIFSKNEL  179 (461)
Q Consensus       100 ~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~  179 (461)
                       +++|+.|+++++ .++.++ ...+++|++|+++++..+..++    +..      +++|+.|++++ ++++. ++... 
T Consensus       126 -l~~L~~L~l~~N-~l~~l~-l~~l~~L~~L~l~~n~~~~~~~----~~~------l~~L~~L~ls~-n~l~~-l~l~~-  189 (457)
T 3bz5_A          126 -NPLLTYLNCARN-TLTEID-VSHNTQLTELDCHLNKKITKLD----VTP------QTQLTTLDCSF-NKITE-LDVSQ-  189 (457)
T ss_dssp             -CTTCCEEECTTS-CCSCCC-CTTCTTCCEEECTTCSCCCCCC----CTT------CTTCCEEECCS-SCCCC-CCCTT-
T ss_pred             -CCcCCEEECCCC-ccceec-cccCCcCCEEECCCCCcccccc----ccc------CCcCCEEECCC-Cccce-ecccc-
Confidence             399999999985 566653 6778999999999986555443    222      56899999999 77776 44221 


Q ss_pred             cchhhhcccCCCCCCccEEEEecCCchhhhHHhhcCCCccceeeccccccceecccccCCCCCccEEEecCCCCCccCCC
Q 045021          180 PATLESLEVGNQPPSLKSLNVWSCSKLESIAERLDNNTSLEMISILWCENLKFLPSGLHNLRQLQEIQLWGCENLVSFPE  259 (461)
Q Consensus       180 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~  259 (461)
                                  +++|+.|++.++ .+..+  .+..+++|++|++++| .+..+|  +..+++|+.|++++| .+..++.
T Consensus       190 ------------l~~L~~L~l~~N-~l~~~--~l~~l~~L~~L~Ls~N-~l~~ip--~~~l~~L~~L~l~~N-~l~~~~~  250 (457)
T 3bz5_A          190 ------------NKLLNRLNCDTN-NITKL--DLNQNIQLTFLDCSSN-KLTEID--VTPLTQLTYFDCSVN-PLTELDV  250 (457)
T ss_dssp             ------------CTTCCEEECCSS-CCSCC--CCTTCTTCSEEECCSS-CCSCCC--CTTCTTCSEEECCSS-CCSCCCC
T ss_pred             ------------CCCCCEEECcCC-cCCee--ccccCCCCCEEECcCC-cccccC--ccccCCCCEEEeeCC-cCCCcCH
Confidence                        267999999985 44444  4788999999999987 455566  788999999999998 4555543


Q ss_pred             CCCCCCCcc----------eEeeccCccccccccccCCCCCccEEEecc--cCCCcCCCCCCCCcceEEeecCchhhHHh
Q 045021          260 GGLPCAKLS----------KLGIYRCERLEALPKGLHNLKSLKKLRIGG--KLPSLEEDGLPTNLHFLKIERNMEIWKSM  327 (461)
Q Consensus       260 ~~~~~~~L~----------~L~l~~c~~~~~~~~~~~~l~~L~~L~l~~--~~~~l~~~~~~~~L~~L~l~~~~~l~~~~  327 (461)
                        ..+++|+          .|++++|.....+|  ++.+++|+.|++++  ....++.  ..++|+.|++++        
T Consensus       251 --~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~--~~~~L~~L~l~~--------  316 (457)
T 3bz5_A          251 --STLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDC--QAAGITELDLSQ--------  316 (457)
T ss_dssp             --TTCTTCCEEECTTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEEC--TTCCCSCCCCTT--------
T ss_pred             --HHCCCCCEEeccCCCCCEEECCCCccCCccc--ccccccCCEEECCCCcccceecc--CCCcceEechhh--------
Confidence              2233454          45555554444444  45667777777776  3333332  122344443332        


Q ss_pred             hhhcccCCCCcCEEEEecCCCcccccCccccccCCCCCCCCCcceeecCCCCCCccc
Q 045021          328 IERGFHKFSSLRHLTIEGCDDDMVSFPPEDRRLGTTLPLPASLASLTIGDFPNLERL  384 (461)
Q Consensus       328 ~~~~~~~l~~L~~L~l~~~~~~~~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i  384 (461)
                             +++|++|++++|  .+..++-         ..+++|+.|++++ +.++.+
T Consensus       317 -------~~~L~~L~L~~N--~l~~l~l---------~~l~~L~~L~l~~-N~l~~l  354 (457)
T 3bz5_A          317 -------NPKLVYLYLNNT--ELTELDV---------SHNTKLKSLSCVN-AHIQDF  354 (457)
T ss_dssp             -------CTTCCEEECTTC--CCSCCCC---------TTCTTCSEEECCS-SCCCBC
T ss_pred             -------cccCCEEECCCC--ccccccc---------ccCCcCcEEECCC-CCCCCc
Confidence                   356666777665  5555432         2455677777766 345443

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.89  E-value=4e-22  Score=203.62  Aligned_cols=301  Identities=15%  Similarity=0.148  Sum_probs=179.1

Q ss_pred             CCCcCEEEecCCcCcccccC--CCCCCCccEEEEeecCCccccCc-ccccCCCCcccEEEeeCCCCCcccccc--CCCCC
Q 045021           52 LSSLREIEICRCHSLVSFPE--VALPSKLKKIEIRECDALKSLPE-AWMCGTNSSLEILKIWSCHSLPYIARV--QLPPS  126 (461)
Q Consensus        52 l~~L~~L~l~~~~~l~~~~~--~~~l~~L~~L~l~~~~~l~~~~~-~~~~~~~~~L~~L~l~~~~~l~~~~~~--~~~~~  126 (461)
                      +++++.|+++++ .+..+|.  +..+++|++|+++++. +..++. .+...  ++|+.|+++++ .++.++..  ..+++
T Consensus        50 l~~l~~l~l~~~-~l~~lp~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l--~~L~~L~L~~n-~l~~~~~~~~~~l~~  124 (597)
T 3oja_B           50 LNNQKIVTFKNS-TMRKLPAALLDSFRQVELLNLNDLQ-IEEIDTYAFAYA--HTIQKLYMGFN-AIRYLPPHVFQNVPL  124 (597)
T ss_dssp             GCCCSEEEESSC-EESEECTHHHHHCCCCSEEECTTSC-CCEECTTTTTTC--TTCCEEECCSS-CCCCCCTTTTTTCTT
T ss_pred             CCCceEEEeeCC-CCCCcCHHHHccCCCCcEEECCCCC-CCCCChHHhcCC--CCCCEEECCCC-cCCCCCHHHHcCCCC
Confidence            456777777765 4555665  5556777777777754 555544 33332  66667766664 34443332  44555


Q ss_pred             ccEEecccCCCceEeccCCCc-ccccccccccCccEEEEecCCCCeecccCCCCcchhhhcccCCCCCCccEEEEecCCc
Q 045021          127 LKRLDISHCDNIRTLTVEDGI-QSSSRRYTSYLLEKLEIWDCPSLTCIFSKNELPATLESLEVGNQPPSLKSLNVWSCSK  205 (461)
Q Consensus       127 L~~L~l~~~~~~~~l~~~~~~-~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  205 (461)
                      |++|+++++. +..+|  ... ..      +++|+.|++++ +.++.                                 
T Consensus       125 L~~L~L~~n~-l~~l~--~~~~~~------l~~L~~L~Ls~-N~l~~---------------------------------  161 (597)
T 3oja_B          125 LTVLVLERND-LSSLP--RGIFHN------TPKLTTLSMSN-NNLER---------------------------------  161 (597)
T ss_dssp             CCEEECCSSC-CCCCC--TTTTTT------CTTCCEEECCS-SCCCB---------------------------------
T ss_pred             CCEEEeeCCC-CCCCC--HHHhcc------CCCCCEEEeeC-CcCCC---------------------------------
Confidence            5555555543 33333  222 11      33444444444 33332                                 


Q ss_pred             hhhhHHhhcCCCccceeeccccccceecccccCCCCCccEEEecCCCCCccCCCCCCCCCCcceEeeccCcccccccccc
Q 045021          206 LESIAERLDNNTSLEMISILWCENLKFLPSGLHNLRQLQEIQLWGCENLVSFPEGGLPCAKLSKLGIYRCERLEALPKGL  285 (461)
Q Consensus       206 l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~~~~~~~~~  285 (461)
                        ..+..+..+++|++|++++|. +..++  ++.+++|+.|++++| .+..++    ..++|+.|++++|. +..++.. 
T Consensus       162 --~~~~~~~~l~~L~~L~L~~N~-l~~~~--~~~l~~L~~L~l~~n-~l~~l~----~~~~L~~L~ls~n~-l~~~~~~-  229 (597)
T 3oja_B          162 --IEDDTFQATTSLQNLQLSSNR-LTHVD--LSLIPSLFHANVSYN-LLSTLA----IPIAVEELDASHNS-INVVRGP-  229 (597)
T ss_dssp             --CCTTTTTTCTTCCEEECTTSC-CSBCC--GGGCTTCSEEECCSS-CCSEEE----CCTTCSEEECCSSC-CCEEECS-
T ss_pred             --CChhhhhcCCcCcEEECcCCC-CCCcC--hhhhhhhhhhhcccC-cccccc----CCchhheeeccCCc-ccccccc-
Confidence              223345555666666665542 22222  334566666666665 222221    12356666666643 3333322 


Q ss_pred             CCCCCccEEEecc-cCCCcCCCCCCCCcceEEeecCchhhHHhhhhcccCCCCcCEEEEecCCCcccccCccccccCCCC
Q 045021          286 HNLKSLKKLRIGG-KLPSLEEDGLPTNLHFLKIERNMEIWKSMIERGFHKFSSLRHLTIEGCDDDMVSFPPEDRRLGTTL  364 (461)
Q Consensus       286 ~~l~~L~~L~l~~-~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~i~~~~~~~~~~~  364 (461)
                       ..++|+.|++++ .+...+....+++|++|++++|. +... ....+..+++|++|++++|  .+..++.. .      
T Consensus       230 -~~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~-l~~~-~~~~~~~l~~L~~L~Ls~N--~l~~l~~~-~------  297 (597)
T 3oja_B          230 -VNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNE-LEKI-MYHPFVKMQRLERLYISNN--RLVALNLY-G------  297 (597)
T ss_dssp             -CCSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSC-CCEE-ESGGGTTCSSCCEEECTTS--CCCEEECS-S------
T ss_pred             -cCCCCCEEECCCCCCCCChhhccCCCCCEEECCCCc-cCCC-CHHHhcCccCCCEEECCCC--CCCCCCcc-c------
Confidence             235677777777 55555545566778888888776 3222 2235778889999999987  77777665 3      


Q ss_pred             CCCCCcceeecCCCCCCcccccchhhccCCcEEEecCCCCCcccCCCCCcccccEeeccCCch
Q 045021          365 PLPASLASLTIGDFPNLERLSSSIVDLQNLKYLKLYDCPKLKYFSEKGLPSSLLRLYIDECPL  427 (461)
Q Consensus       365 ~~~~~L~~L~l~~~~~l~~i~~~~~~~~~L~~L~l~~C~~l~~~~~~~~~~~L~~L~i~~c~~  427 (461)
                      ..+++|+.|++++| .+..+|..+..+++|+.|++++ +.++.++... +++|++|++++|+.
T Consensus       298 ~~l~~L~~L~Ls~N-~l~~i~~~~~~l~~L~~L~L~~-N~l~~~~~~~-~~~L~~L~l~~N~~  357 (597)
T 3oja_B          298 QPIPTLKVLDLSHN-HLLHVERNQPQFDRLENLYLDH-NSIVTLKLST-HHTLKNLTLSHNDW  357 (597)
T ss_dssp             SCCTTCCEEECCSS-CCCCCGGGHHHHTTCSEEECCS-SCCCCCCCCT-TCCCSEEECCSSCE
T ss_pred             ccCCCCcEEECCCC-CCCccCcccccCCCCCEEECCC-CCCCCcChhh-cCCCCEEEeeCCCC
Confidence            25679999999984 6778887888899999999999 6777776533 48999999998864

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.88  E-value=2.4e-21  Score=187.51  Aligned_cols=286  Identities=18%  Similarity=0.165  Sum_probs=187.7

Q ss_pred             ccccccchhhhhhhhhhhhcCCccEEEecCCcCCcccc-ccCCCCCCcCEEEecCCcCcccccC--CCCCCCccEEEEee
Q 045021            9 LQSLVAEEEKDQQQQLCELSCRLEYLILRYCKGLVKLP-QSSLSLSSLREIEICRCHSLVSFPE--VALPSKLKKIEIRE   85 (461)
Q Consensus         9 l~~l~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~l~-~~~~~l~~L~~L~l~~~~~l~~~~~--~~~l~~L~~L~l~~   85 (461)
                      ++.++.    ..+..+    ++|++|+++++. +..++ ..+..+++|++|++++| .+..+++  ++.+++|++|++++
T Consensus        57 l~~l~~----~~~~~l----~~L~~L~L~~n~-i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~  126 (390)
T 3o6n_A           57 MRKLPA----ALLDSF----RQVELLNLNDLQ-IEEIDTYAFAYAHTIQKLYMGFN-AIRYLPPHVFQNVPLLTVLVLER  126 (390)
T ss_dssp             ESEECT----HHHHHC----CCCSEEECTTSC-CCEECTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCS
T ss_pred             hhhCCh----hHhccc----ccCcEEECCCCc-ccccChhhccCCCCcCEEECCCC-CCCcCCHHHhcCCCCCCEEECCC
Confidence            444554    446677    999999999954 56664 47999999999999997 4666655  78899999999999


Q ss_pred             cCCccccCcccccCCCCcccEEEeeCCCCCccccc--cCCCCCccEEecccCCCceEeccCCCcccccccccccCccEEE
Q 045021           86 CDALKSLPEAWMCGTNSSLEILKIWSCHSLPYIAR--VQLPPSLKRLDISHCDNIRTLTVEDGIQSSSRRYTSYLLEKLE  163 (461)
Q Consensus        86 ~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~--~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~  163 (461)
                      +. +..+|...+.. +++|++|+++++ .++.++.  ...+++|++|+++++. ++.++    +..      +++|+.++
T Consensus       127 n~-l~~l~~~~~~~-l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~----~~~------l~~L~~L~  192 (390)
T 3o6n_A          127 ND-LSSLPRGIFHN-TPKLTTLSMSNN-NLERIEDDTFQATTSLQNLQLSSNR-LTHVD----LSL------IPSLFHAN  192 (390)
T ss_dssp             SC-CCCCCTTTTTT-CTTCCEEECCSS-CCCBCCTTTTSSCTTCCEEECCSSC-CSBCC----GGG------CTTCSEEE
T ss_pred             Cc-cCcCCHHHhcC-CCCCcEEECCCC-ccCccChhhccCCCCCCEEECCCCc-CCccc----ccc------ccccceee
Confidence            76 88888775332 389999999985 5555544  3678999999999875 33333    111      45788888


Q ss_pred             EecCCCCeecccCCCCcchhhhcccCCCCCCccEEEEecCCchhhhHHhhcCCCccceeeccccccceecccccCCCCCc
Q 045021          164 IWDCPSLTCIFSKNELPATLESLEVGNQPPSLKSLNVWSCSKLESIAERLDNNTSLEMISILWCENLKFLPSGLHNLRQL  243 (461)
Q Consensus       164 l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L  243 (461)
                      +++ +.+.. ++.               +++|+.|++.++ .+..++.  ...++|++|++++|. +... ..+..+++|
T Consensus       193 l~~-n~l~~-~~~---------------~~~L~~L~l~~n-~l~~~~~--~~~~~L~~L~l~~n~-l~~~-~~l~~l~~L  250 (390)
T 3o6n_A          193 VSY-NLLST-LAI---------------PIAVEELDASHN-SINVVRG--PVNVELTILKLQHNN-LTDT-AWLLNYPGL  250 (390)
T ss_dssp             CCS-SCCSE-EEC---------------CSSCSEEECCSS-CCCEEEC--CCCSSCCEEECCSSC-CCCC-GGGGGCTTC
T ss_pred             ccc-ccccc-cCC---------------CCcceEEECCCC-eeeeccc--cccccccEEECCCCC-Cccc-HHHcCCCCc
Confidence            887 55554 221               134777777664 3333322  234567777777653 3332 346666777


Q ss_pred             cEEEecCCCCCccCCCCCCCCCCcceEeeccCccccccccccCCCCCccEEEecc-cCCCcCCC-CCCCCcceEEeecCc
Q 045021          244 QEIQLWGCENLVSFPEGGLPCAKLSKLGIYRCERLEALPKGLHNLKSLKKLRIGG-KLPSLEED-GLPTNLHFLKIERNM  321 (461)
Q Consensus       244 ~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~l~~L~~L~l~~-~~~~l~~~-~~~~~L~~L~l~~~~  321 (461)
                      +.|++++|......+.....+++|++|++++| .++.++..+..+++|++|++++ .+..++.. ..+++|++|++++|.
T Consensus       251 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~N~  329 (390)
T 3o6n_A          251 VEVDLSYNELEKIMYHPFVKMQRLERLYISNN-RLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNS  329 (390)
T ss_dssp             SEEECCSSCCCEEESGGGTTCSSCCEEECCSS-CCCEEECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSC
T ss_pred             cEEECCCCcCCCcChhHccccccCCEEECCCC-cCcccCcccCCCCCCCEEECCCCcceecCccccccCcCCEEECCCCc
Confidence            77777776332222334445567777777764 4455555556677777777777 55555433 344677777777776


Q ss_pred             hhhHHhhhhcccCCCCcCEEEEecC
Q 045021          322 EIWKSMIERGFHKFSSLRHLTIEGC  346 (461)
Q Consensus       322 ~l~~~~~~~~~~~l~~L~~L~l~~~  346 (461)
                      . +..    .+..+++|++|++++|
T Consensus       330 i-~~~----~~~~~~~L~~L~l~~N  349 (390)
T 3o6n_A          330 I-VTL----KLSTHHTLKNLTLSHN  349 (390)
T ss_dssp             C-CCC----CCCTTCCCSEEECCSS
T ss_pred             c-cee----CchhhccCCEEEcCCC
Confidence            2 211    2556777777777776

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.87  E-value=7.8e-21  Score=179.63  Aligned_cols=243  Identities=14%  Similarity=0.184  Sum_probs=140.2

Q ss_pred             CccEEEecCCcCCccccccCCCCCCcCEEEecCCcCcccccC--CCCCCCccEEEEeecCCcccc-CcccccCCCCcccE
Q 045021           30 RLEYLILRYCKGLVKLPQSSLSLSSLREIEICRCHSLVSFPE--VALPSKLKKIEIRECDALKSL-PEAWMCGTNSSLEI  106 (461)
Q Consensus        30 ~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~--~~~l~~L~~L~l~~~~~l~~~-~~~~~~~~~~~L~~  106 (461)
                      +++++++++ ..+..+|..+.  ++|++|++++| .+..++.  ++.+++|++|+++++. +..+ |..+...  ++|++
T Consensus        32 ~l~~l~~~~-~~l~~lp~~~~--~~l~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l--~~L~~  104 (330)
T 1xku_A           32 HLRVVQCSD-LGLEKVPKDLP--PDTALLDLQNN-KITEIKDGDFKNLKNLHTLILINNK-ISKISPGAFAPL--VKLER  104 (330)
T ss_dssp             ETTEEECTT-SCCCSCCCSCC--TTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCSSC-CCCBCTTTTTTC--TTCCE
T ss_pred             CCeEEEecC-CCccccCccCC--CCCeEEECCCC-cCCEeChhhhccCCCCCEEECCCCc-CCeeCHHHhcCC--CCCCE
Confidence            678888877 34567776554  67888888886 4666654  7778888888888865 5555 4444444  78888


Q ss_pred             EEeeCCCCCccccccCCCCCccEEecccCCCceEeccCCCcccccccccccCccEEEEecCCCCeec-ccCCCCcchhhh
Q 045021          107 LKIWSCHSLPYIARVQLPPSLKRLDISHCDNIRTLTVEDGIQSSSRRYTSYLLEKLEIWDCPSLTCI-FSKNELPATLES  185 (461)
Q Consensus       107 L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~-~~~~~~~~~~~~  185 (461)
                      |+++++ .++.++... .++|++|+++++. +..++. ..+..      +++|+.|++++ +.++.. .....+..    
T Consensus       105 L~Ls~n-~l~~l~~~~-~~~L~~L~l~~n~-l~~~~~-~~~~~------l~~L~~L~l~~-n~l~~~~~~~~~~~~----  169 (330)
T 1xku_A          105 LYLSKN-QLKELPEKM-PKTLQELRVHENE-ITKVRK-SVFNG------LNQMIVVELGT-NPLKSSGIENGAFQG----  169 (330)
T ss_dssp             EECCSS-CCSBCCSSC-CTTCCEEECCSSC-CCBBCH-HHHTT------CTTCCEEECCS-SCCCGGGBCTTGGGG----
T ss_pred             EECCCC-cCCccChhh-cccccEEECCCCc-ccccCH-hHhcC------CccccEEECCC-CcCCccCcChhhccC----
Confidence            888774 455554432 3677777777754 333220 11222      44677777776 444320 01111111    


Q ss_pred             cccCCCCCCccEEEEecCCchhhhHHhhcCCCccceeeccccccceecccccCCCCCccEEEecCCCCCccCCC-CCCCC
Q 045021          186 LEVGNQPPSLKSLNVWSCSKLESIAERLDNNTSLEMISILWCENLKFLPSGLHNLRQLQEIQLWGCENLVSFPE-GGLPC  264 (461)
Q Consensus       186 ~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~-~~~~~  264 (461)
                            +++|+.|++.++ .+..++..+  .++|++|++++|......+..+..+++|+.|++++|. +..++. ....+
T Consensus       170 ------l~~L~~L~l~~n-~l~~l~~~~--~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l  239 (330)
T 1xku_A          170 ------MKKLSYIRIADT-NITTIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNS-ISAVDNGSLANT  239 (330)
T ss_dssp             ------CTTCCEEECCSS-CCCSCCSSC--CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSC-CCEECTTTGGGS
T ss_pred             ------CCCcCEEECCCC-ccccCCccc--cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCc-CceeChhhccCC
Confidence                  145666766663 333343322  2566777776654333334556666677777776653 333332 33445


Q ss_pred             CCcceEeeccCccccccccccCCCCCccEEEecc-cCCCcCC
Q 045021          265 AKLSKLGIYRCERLEALPKGLHNLKSLKKLRIGG-KLPSLEE  305 (461)
Q Consensus       265 ~~L~~L~l~~c~~~~~~~~~~~~l~~L~~L~l~~-~~~~l~~  305 (461)
                      ++|++|++++| .++.+|..+..+++|++|++++ .+..++.
T Consensus       240 ~~L~~L~L~~N-~l~~lp~~l~~l~~L~~L~l~~N~i~~~~~  280 (330)
T 1xku_A          240 PHLRELHLNNN-KLVKVPGGLADHKYIQVVYLHNNNISAIGS  280 (330)
T ss_dssp             TTCCEEECCSS-CCSSCCTTTTTCSSCCEEECCSSCCCCCCT
T ss_pred             CCCCEEECCCC-cCccCChhhccCCCcCEEECCCCcCCccCh
Confidence            56666666664 4445666666666666666666 5544443

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.87  E-value=4e-21  Score=181.09  Aligned_cols=230  Identities=22%  Similarity=0.305  Sum_probs=176.5

Q ss_pred             cCCccEEEecCCcCCccccccCCCCCCcCEEEecCCcCcccccC-CCCCCCccEEEEeecCCccccCcccccCCCCcccE
Q 045021           28 SCRLEYLILRYCKGLVKLPQSSLSLSSLREIEICRCHSLVSFPE-VALPSKLKKIEIRECDALKSLPEAWMCGTNSSLEI  106 (461)
Q Consensus        28 ~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~-~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~  106 (461)
                      ++++++|++++ ..+..+|..+..+++|++|++++| .+..+|. ++.+++|++|+++++. +..+|..+...  ++|+.
T Consensus        80 ~~~l~~L~L~~-n~l~~lp~~l~~l~~L~~L~L~~n-~l~~lp~~~~~l~~L~~L~Ls~n~-l~~lp~~l~~l--~~L~~  154 (328)
T 4fcg_A           80 QPGRVALELRS-VPLPQFPDQAFRLSHLQHMTIDAA-GLMELPDTMQQFAGLETLTLARNP-LRALPASIASL--NRLRE  154 (328)
T ss_dssp             STTCCEEEEES-SCCSSCCSCGGGGTTCSEEEEESS-CCCCCCSCGGGGTTCSEEEEESCC-CCCCCGGGGGC--TTCCE
T ss_pred             ccceeEEEccC-CCchhcChhhhhCCCCCEEECCCC-CccchhHHHhccCCCCEEECCCCc-cccCcHHHhcC--cCCCE
Confidence            38899999998 456788888888999999999997 4557877 8889999999999976 77888877766  88999


Q ss_pred             EEeeCCCCCccccccCCCCCccEEecccCCCceEeccCCCcccccccccccCccEEEEecCCCCeecccCCCCcchhhhc
Q 045021          107 LKIWSCHSLPYIARVQLPPSLKRLDISHCDNIRTLTVEDGIQSSSRRYTSYLLEKLEIWDCPSLTCIFSKNELPATLESL  186 (461)
Q Consensus       107 L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~  186 (461)
                      |++++|+....++..     +....+.           ..+..      +++|+.|++++ +.++. +|.. +..     
T Consensus       155 L~L~~n~~~~~~p~~-----~~~~~~~-----------~~~~~------l~~L~~L~L~~-n~l~~-lp~~-l~~-----  204 (328)
T 4fcg_A          155 LSIRACPELTELPEP-----LASTDAS-----------GEHQG------LVNLQSLRLEW-TGIRS-LPAS-IAN-----  204 (328)
T ss_dssp             EEEEEETTCCCCCSC-----SEEEC-C-----------CCEEE------STTCCEEEEEE-ECCCC-CCGG-GGG-----
T ss_pred             EECCCCCCccccChh-----Hhhccch-----------hhhcc------CCCCCEEECcC-CCcCc-chHh-hcC-----
Confidence            999887766655532     1111111           11222      44677777777 45554 3322 111     


Q ss_pred             ccCCCCCCccEEEEecCCchhhhHHhhcCCCccceeeccccccceecccccCCCCCccEEEecCCCCCccCCCCCCCCCC
Q 045021          187 EVGNQPPSLKSLNVWSCSKLESIAERLDNNTSLEMISILWCENLKFLPSGLHNLRQLQEIQLWGCENLVSFPEGGLPCAK  266 (461)
Q Consensus       187 ~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~  266 (461)
                           +++|+.|++.++ .+..++..+..+++|++|++++|.....+|..++.+++|+.|++++|.....++.....+++
T Consensus       205 -----l~~L~~L~L~~N-~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~  278 (328)
T 4fcg_A          205 -----LQNLKSLKIRNS-PLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQ  278 (328)
T ss_dssp             -----CTTCCEEEEESS-CCCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTT
T ss_pred             -----CCCCCEEEccCC-CCCcCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCC
Confidence                 156888888875 44456667888999999999998888888888999999999999999888888887777889


Q ss_pred             cceEeeccCccccccccccCCCCCccEEEecc
Q 045021          267 LSKLGIYRCERLEALPKGLHNLKSLKKLRIGG  298 (461)
Q Consensus       267 L~~L~l~~c~~~~~~~~~~~~l~~L~~L~l~~  298 (461)
                      |++|++++|.....+|..++.+++|+.+++..
T Consensus       279 L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~  310 (328)
T 4fcg_A          279 LEKLDLRGCVNLSRLPSLIAQLPANCIILVPP  310 (328)
T ss_dssp             CCEEECTTCTTCCCCCGGGGGSCTTCEEECCG
T ss_pred             CCEEeCCCCCchhhccHHHhhccCceEEeCCH
Confidence            99999999999999999999999999998876

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.86  E-value=1.6e-20  Score=191.78  Aligned_cols=280  Identities=18%  Similarity=0.205  Sum_probs=159.4

Q ss_pred             CccccccchhhhhhhhhhhhcCCccEEEecCCcCCcccc-ccCCCCCCcCEEEecCCcCcccccC--CCCCCCccEEEEe
Q 045021            8 KLQSLVAEEEKDQQQQLCELSCRLEYLILRYCKGLVKLP-QSSLSLSSLREIEICRCHSLVSFPE--VALPSKLKKIEIR   84 (461)
Q Consensus         8 ~l~~l~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~l~-~~~~~l~~L~~L~l~~~~~l~~~~~--~~~l~~L~~L~l~   84 (461)
                      .++.++.    ..++.+    ++|++|+++++. +..++ ..++.+++|++|++++| .+..+++  ++.+++|++|+++
T Consensus        62 ~l~~lp~----~~~~~l----~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~  131 (597)
T 3oja_B           62 TMRKLPA----ALLDSF----RQVELLNLNDLQ-IEEIDTYAFAYAHTIQKLYMGFN-AIRYLPPHVFQNVPLLTVLVLE  131 (597)
T ss_dssp             EESEECT----HHHHHC----CCCSEEECTTSC-CCEECTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCCCcCH----HHHccC----CCCcEEECCCCC-CCCCChHHhcCCCCCCEEECCCC-cCCCCCHHHHcCCCCCCEEEee
Confidence            3455554    446777    999999999954 56654 48999999999999997 4666765  6889999999999


Q ss_pred             ecCCccccCcccccCCCCcccEEEeeCCCCCccccc--cCCCCCccEEecccCCCceEeccCCCcccccccccccCccEE
Q 045021           85 ECDALKSLPEAWMCGTNSSLEILKIWSCHSLPYIAR--VQLPPSLKRLDISHCDNIRTLTVEDGIQSSSRRYTSYLLEKL  162 (461)
Q Consensus        85 ~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~--~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L  162 (461)
                      +|. +..+|..++.. +++|+.|+++++ .++.++.  ...+++|++|+++++. +..++  .+.        +++|+.|
T Consensus       132 ~n~-l~~l~~~~~~~-l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~--~~~--------l~~L~~L  197 (597)
T 3oja_B          132 RND-LSSLPRGIFHN-TPKLTTLSMSNN-NLERIEDDTFQATTSLQNLQLSSNR-LTHVD--LSL--------IPSLFHA  197 (597)
T ss_dssp             SSC-CCCCCTTTTTT-CTTCCEEECCSS-CCCBCCTTTTTTCTTCCEEECTTSC-CSBCC--GGG--------CTTCSEE
T ss_pred             CCC-CCCCCHHHhcc-CCCCCEEEeeCC-cCCCCChhhhhcCCcCcEEECcCCC-CCCcC--hhh--------hhhhhhh
Confidence            976 88888775322 389999999986 5555544  3778999999999875 33333  111        4467777


Q ss_pred             EEecCCCCeecccCCCCcchhhhccc---------CCCCCCccEEEEecCCchhhhHHhhcCCCccceeeccccccceec
Q 045021          163 EIWDCPSLTCIFSKNELPATLESLEV---------GNQPPSLKSLNVWSCSKLESIAERLDNNTSLEMISILWCENLKFL  233 (461)
Q Consensus       163 ~l~~~~~l~~~~~~~~~~~~~~~~~~---------~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~  233 (461)
                      ++++ +.+.. ++.   +..+..+.+         +..+++|+.|++.++. +... ..+..+++|++|++++|......
T Consensus       198 ~l~~-n~l~~-l~~---~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~-l~~~-~~l~~l~~L~~L~Ls~N~l~~~~  270 (597)
T 3oja_B          198 NVSY-NLLST-LAI---PIAVEELDASHNSINVVRGPVNVELTILKLQHNN-LTDT-AWLLNYPGLVEVDLSYNELEKIM  270 (597)
T ss_dssp             ECCS-SCCSE-EEC---CTTCSEEECCSSCCCEEECSCCSCCCEEECCSSC-CCCC-GGGGGCTTCSEEECCSSCCCEEE
T ss_pred             hccc-Ccccc-ccC---CchhheeeccCCcccccccccCCCCCEEECCCCC-CCCC-hhhccCCCCCEEECCCCccCCCC
Confidence            7776 45444 211   111000000         0111234555554432 2111 23444555555555554333333


Q ss_pred             ccccCCCCCccEEEecCCCCCccCCCCCCCCCCcceEeeccCccccccccccCCCCCccEEEecc-cCCCcCCCCCCCCc
Q 045021          234 PSGLHNLRQLQEIQLWGCENLVSFPEGGLPCAKLSKLGIYRCERLEALPKGLHNLKSLKKLRIGG-KLPSLEEDGLPTNL  312 (461)
Q Consensus       234 ~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~l~~L~~L~l~~-~~~~l~~~~~~~~L  312 (461)
                      |..++.+++|+.|++++| .+..++.....+++|++|++++| .+..+|..+..+++|++|++++ .+..++ ...+++|
T Consensus       271 ~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~L  347 (597)
T 3oja_B          271 YHPFVKMQRLERLYISNN-RLVALNLYGQPIPTLKVLDLSHN-HLLHVERNQPQFDRLENLYLDHNSIVTLK-LSTHHTL  347 (597)
T ss_dssp             SGGGTTCSSCCEEECTTS-CCCEEECSSSCCTTCCEEECCSS-CCCCCGGGHHHHTTCSEEECCSSCCCCCC-CCTTCCC
T ss_pred             HHHhcCccCCCEEECCCC-CCCCCCcccccCCCCcEEECCCC-CCCccCcccccCCCCCEEECCCCCCCCcC-hhhcCCC
Confidence            444555555555555554 33334433334445555555543 2334444444455555555555 443333 2233445


Q ss_pred             ceEEeecCc
Q 045021          313 HFLKIERNM  321 (461)
Q Consensus       313 ~~L~l~~~~  321 (461)
                      +.|++++|+
T Consensus       348 ~~L~l~~N~  356 (597)
T 3oja_B          348 KNLTLSHND  356 (597)
T ss_dssp             SEEECCSSC
T ss_pred             CEEEeeCCC
Confidence            555555544

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.85  E-value=2.6e-20  Score=176.05  Aligned_cols=287  Identities=12%  Similarity=0.126  Sum_probs=200.7

Q ss_pred             CccEEecccCCCceEeccCCCcccccccccccCccEEEEecCCCCeecccCCCCcchhhhcccCCCCCCccEEEEecCCc
Q 045021          126 SLKRLDISHCDNIRTLTVEDGIQSSSRRYTSYLLEKLEIWDCPSLTCIFSKNELPATLESLEVGNQPPSLKSLNVWSCSK  205 (461)
Q Consensus       126 ~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  205 (461)
                      +++.++++++. ++.+|  ..+.        ++++.|++++ +.++. ++...+...          ++|++|++.++..
T Consensus        32 ~l~~l~~~~~~-l~~lp--~~~~--------~~l~~L~L~~-n~i~~-~~~~~~~~l----------~~L~~L~L~~n~l   88 (330)
T 1xku_A           32 HLRVVQCSDLG-LEKVP--KDLP--------PDTALLDLQN-NKITE-IKDGDFKNL----------KNLHTLILINNKI   88 (330)
T ss_dssp             ETTEEECTTSC-CCSCC--CSCC--------TTCCEEECCS-SCCCC-BCTTTTTTC----------TTCCEEECCSSCC
T ss_pred             CCeEEEecCCC-ccccC--ccCC--------CCCeEEECCC-CcCCE-eChhhhccC----------CCCCEEECCCCcC
Confidence            45556665533 44455  4332        3577777777 56665 444333332          5688888877543


Q ss_pred             hhhhHHhhcCCCccceeeccccccceecccccCCCCCccEEEecCCCCCccCCC-CCCCCCCcceEeeccCcccc--ccc
Q 045021          206 LESIAERLDNNTSLEMISILWCENLKFLPSGLHNLRQLQEIQLWGCENLVSFPE-GGLPCAKLSKLGIYRCERLE--ALP  282 (461)
Q Consensus       206 l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~c~~~~--~~~  282 (461)
                      ....+..+..+++|++|++++| .+..+|..+.  ++|++|++++| .+..++. ....+++|++|++++|....  ..+
T Consensus        89 ~~~~~~~~~~l~~L~~L~Ls~n-~l~~l~~~~~--~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~  164 (330)
T 1xku_A           89 SKISPGAFAPLVKLERLYLSKN-QLKELPEKMP--KTLQELRVHEN-EITKVRKSVFNGLNQMIVVELGTNPLKSSGIEN  164 (330)
T ss_dssp             CCBCTTTTTTCTTCCEEECCSS-CCSBCCSSCC--TTCCEEECCSS-CCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCT
T ss_pred             CeeCHHHhcCCCCCCEEECCCC-cCCccChhhc--ccccEEECCCC-cccccCHhHhcCCccccEEECCCCcCCccCcCh
Confidence            3333667788888999999876 4556665554  78999999887 4444443 34456789999998865422  445


Q ss_pred             cccCCCCCccEEEecc-cCCCcCCCCCCCCcceEEeecCchhhHHhhhhcccCCCCcCEEEEecCCCcccccCccccccC
Q 045021          283 KGLHNLKSLKKLRIGG-KLPSLEEDGLPTNLHFLKIERNMEIWKSMIERGFHKFSSLRHLTIEGCDDDMVSFPPEDRRLG  361 (461)
Q Consensus       283 ~~~~~l~~L~~L~l~~-~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~i~~~~~~~~  361 (461)
                      ..+..+++|++|++++ .+..++... +++|++|++++|. ++. .....+..+++|++|++++|  .+..++...+   
T Consensus       165 ~~~~~l~~L~~L~l~~n~l~~l~~~~-~~~L~~L~l~~n~-l~~-~~~~~~~~l~~L~~L~Ls~n--~l~~~~~~~~---  236 (330)
T 1xku_A          165 GAFQGMKKLSYIRIADTNITTIPQGL-PPSLTELHLDGNK-ITK-VDAASLKGLNNLAKLGLSFN--SISAVDNGSL---  236 (330)
T ss_dssp             TGGGGCTTCCEEECCSSCCCSCCSSC-CTTCSEEECTTSC-CCE-ECTGGGTTCTTCCEEECCSS--CCCEECTTTG---
T ss_pred             hhccCCCCcCEEECCCCccccCCccc-cccCCEEECCCCc-CCc-cCHHHhcCCCCCCEEECCCC--cCceeChhhc---
Confidence            5788899999999999 777777543 4799999999997 332 22335788999999999998  7777765434   


Q ss_pred             CCCCCCCCcceeecCCCCCCcccccchhhccCCcEEEecCCCCCcccCCCCC--------cccccEeeccCCchhHHhhc
Q 045021          362 TTLPLPASLASLTIGDFPNLERLSSSIVDLQNLKYLKLYDCPKLKYFSEKGL--------PSSLLRLYIDECPLIEEKCR  433 (461)
Q Consensus       362 ~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~L~~L~l~~C~~l~~~~~~~~--------~~~L~~L~i~~c~~l~~~~~  433 (461)
                         ..+++|++|+++++ .+..+|..+..+++|++|++++ +.++.++...+        .++++.|+++++|.....  
T Consensus       237 ---~~l~~L~~L~L~~N-~l~~lp~~l~~l~~L~~L~l~~-N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~--  309 (330)
T 1xku_A          237 ---ANTPHLRELHLNNN-KLVKVPGGLADHKYIQVVYLHN-NNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWE--  309 (330)
T ss_dssp             ---GGSTTCCEEECCSS-CCSSCCTTTTTCSSCCEEECCS-SCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGG--
T ss_pred             ---cCCCCCCEEECCCC-cCccCChhhccCCCcCEEECCC-CcCCccChhhcCCcccccccccccceEeecCcccccc--
Confidence               25779999999995 7889998899999999999999 78998876433        368899999999853221  


Q ss_pred             ccCccccccccccceEEEcccE
Q 045021          434 KDGEQYWDLLTHIPRVRIHLPV  455 (461)
Q Consensus       434 ~~~~~~~~~~~~~~~~~~~~~~  455 (461)
                       .....+....++..+++.+|.
T Consensus       310 -i~~~~f~~~~~l~~l~L~~N~  330 (330)
T 1xku_A          310 -IQPSTFRCVYVRAAVQLGNYK  330 (330)
T ss_dssp             -SCGGGGTTCCCGGGEEC----
T ss_pred             -cCccccccccceeEEEecccC
Confidence             123456667788888887763

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.85  E-value=3.8e-20  Score=175.02  Aligned_cols=199  Identities=13%  Similarity=0.138  Sum_probs=111.6

Q ss_pred             CccEEEEecCCchhhh-HHhhcCCCccceeeccccccc--eecccccCCCCCccEEEecCCCCCccCCCCCCCCCCcceE
Q 045021          194 SLKSLNVWSCSKLESI-AERLDNNTSLEMISILWCENL--KFLPSGLHNLRQLQEIQLWGCENLVSFPEGGLPCAKLSKL  270 (461)
Q Consensus       194 ~L~~L~l~~~~~l~~~-~~~~~~l~~L~~L~l~~~~~~--~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L  270 (461)
                      +|++|++.++. +..+ +..+..+++|++|+++++..-  ...+..+..+ +|+.|++++| .+..++....  ++|++|
T Consensus       124 ~L~~L~l~~n~-i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n-~l~~l~~~~~--~~L~~L  198 (332)
T 2ft3_A          124 SLVELRIHDNR-IRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEA-KLTGIPKDLP--ETLNEL  198 (332)
T ss_dssp             TCCEEECCSSC-CCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSS-BCSSCCSSSC--SSCSCC
T ss_pred             cCCEEECCCCc-cCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCC-CCCccCcccc--CCCCEE
Confidence            35566665532 2222 224566677777777765331  2334555555 7777777776 4555554333  477777


Q ss_pred             eeccCccccccccccCCCCCccEEEecc-cCCCcCCC--CCCCCcceEEeecCchhhHHhhhhcccCCCCcCEEEEecCC
Q 045021          271 GIYRCERLEALPKGLHNLKSLKKLRIGG-KLPSLEED--GLPTNLHFLKIERNMEIWKSMIERGFHKFSSLRHLTIEGCD  347 (461)
Q Consensus       271 ~l~~c~~~~~~~~~~~~l~~L~~L~l~~-~~~~l~~~--~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~  347 (461)
                      ++++|......+..+..+++|++|++++ .+..++..  ..+++|++|++++|. +. ..+. .+..+++|++|++++| 
T Consensus       199 ~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~-~lp~-~l~~l~~L~~L~l~~N-  274 (332)
T 2ft3_A          199 HLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNK-LS-RVPA-GLPDLKLLQVVYLHTN-  274 (332)
T ss_dssp             BCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSC-CC-BCCT-TGGGCTTCCEEECCSS-
T ss_pred             ECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCc-Ce-ecCh-hhhcCccCCEEECCCC-
Confidence            7777543333334677777777777777 55555432  345677777777765 22 1221 3566778888888876 


Q ss_pred             CcccccCccccccCCCCCCCCCcceeecCCCCCC--cccccchhhccCCcEEEecCC
Q 045021          348 DDMVSFPPEDRRLGTTLPLPASLASLTIGDFPNL--ERLSSSIVDLQNLKYLKLYDC  402 (461)
Q Consensus       348 ~~~~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l--~~i~~~~~~~~~L~~L~l~~C  402 (461)
                       .+..++...++........++|+.|++++++..  ...+..+..+++|+.++++++
T Consensus       275 -~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n  330 (332)
T 2ft3_A          275 -NITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY  330 (332)
T ss_dssp             -CCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC---
T ss_pred             -CCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhcccc
Confidence             666665542321000112456777777775422  122355666777777777764

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.85  E-value=5.1e-20  Score=174.16  Aligned_cols=286  Identities=15%  Similarity=0.172  Sum_probs=194.5

Q ss_pred             CccEEecccCCCceEeccCCCcccccccccccCccEEEEecCCCCeecccCCCCcchhhhcccCCCCCCccEEEEecCCc
Q 045021          126 SLKRLDISHCDNIRTLTVEDGIQSSSRRYTSYLLEKLEIWDCPSLTCIFSKNELPATLESLEVGNQPPSLKSLNVWSCSK  205 (461)
Q Consensus       126 ~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  205 (461)
                      +++.++++++. ++.+|  ..+.        ++++.|++++ +.++. ++...+...          ++|++|++.++..
T Consensus        34 ~l~~l~~~~~~-l~~ip--~~~~--------~~l~~L~l~~-n~i~~-~~~~~~~~l----------~~L~~L~L~~n~l   90 (332)
T 2ft3_A           34 HLRVVQCSDLG-LKAVP--KEIS--------PDTTLLDLQN-NDISE-LRKDDFKGL----------QHLYALVLVNNKI   90 (332)
T ss_dssp             ETTEEECCSSC-CSSCC--SCCC--------TTCCEEECCS-SCCCE-ECTTTTTTC----------TTCCEEECCSSCC
T ss_pred             cCCEEECCCCC-ccccC--CCCC--------CCCeEEECCC-CcCCc-cCHhHhhCC----------CCCcEEECCCCcc
Confidence            45666666543 44555  4332        3577777777 55655 433333332          5688888877543


Q ss_pred             hhhhHHhhcCCCccceeeccccccceecccccCCCCCccEEEecCCCCCccCCC-CCCCCCCcceEeeccCccc--cccc
Q 045021          206 LESIAERLDNNTSLEMISILWCENLKFLPSGLHNLRQLQEIQLWGCENLVSFPE-GGLPCAKLSKLGIYRCERL--EALP  282 (461)
Q Consensus       206 l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~c~~~--~~~~  282 (461)
                      ....+..+..+++|++|++++| .+..+|..+.  ++|++|++++| .+..++. ....+++|++|++++|..-  ...+
T Consensus        91 ~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~--~~L~~L~l~~n-~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~  166 (332)
T 2ft3_A           91 SKIHEKAFSPLRKLQKLYISKN-HLVEIPPNLP--SSLVELRIHDN-RIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEP  166 (332)
T ss_dssp             CEECGGGSTTCTTCCEEECCSS-CCCSCCSSCC--TTCCEEECCSS-CCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCT
T ss_pred             CccCHhHhhCcCCCCEEECCCC-cCCccCcccc--ccCCEEECCCC-ccCccCHhHhCCCccCCEEECCCCccccCCCCc
Confidence            3333567788888888888876 4556665554  78888888887 4555554 3455778888988886542  2345


Q ss_pred             cccCCCCCccEEEecc-cCCCcCCCCCCCCcceEEeecCchhhHHhhhhcccCCCCcCEEEEecCCCcccccCccccccC
Q 045021          283 KGLHNLKSLKKLRIGG-KLPSLEEDGLPTNLHFLKIERNMEIWKSMIERGFHKFSSLRHLTIEGCDDDMVSFPPEDRRLG  361 (461)
Q Consensus       283 ~~~~~l~~L~~L~l~~-~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~i~~~~~~~~  361 (461)
                      ..+..+ +|++|++++ .+..++.. .+++|++|++++|. ++. .....+..+++|++|++++|  .+..++...+   
T Consensus       167 ~~~~~l-~L~~L~l~~n~l~~l~~~-~~~~L~~L~l~~n~-i~~-~~~~~l~~l~~L~~L~L~~N--~l~~~~~~~~---  237 (332)
T 2ft3_A          167 GAFDGL-KLNYLRISEAKLTGIPKD-LPETLNELHLDHNK-IQA-IELEDLLRYSKLYRLGLGHN--QIRMIENGSL---  237 (332)
T ss_dssp             TSSCSC-CCSCCBCCSSBCSSCCSS-SCSSCSCCBCCSSC-CCC-CCTTSSTTCTTCSCCBCCSS--CCCCCCTTGG---
T ss_pred             ccccCC-ccCEEECcCCCCCccCcc-ccCCCCEEECCCCc-CCc-cCHHHhcCCCCCCEEECCCC--cCCcCChhHh---
Confidence            566666 889999988 77777654 34789999999987 322 22235778899999999998  7777766434   


Q ss_pred             CCCCCCCCcceeecCCCCCCcccccchhhccCCcEEEecCCCCCcccCCCCC--------cccccEeeccCCchhHHhhc
Q 045021          362 TTLPLPASLASLTIGDFPNLERLSSSIVDLQNLKYLKLYDCPKLKYFSEKGL--------PSSLLRLYIDECPLIEEKCR  433 (461)
Q Consensus       362 ~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~L~~L~l~~C~~l~~~~~~~~--------~~~L~~L~i~~c~~l~~~~~  433 (461)
                         ..+++|++|++++ +.+..+|..+..+++|++|++++ +.++.++...+        .++++.|+++++|...... 
T Consensus       238 ---~~l~~L~~L~L~~-N~l~~lp~~l~~l~~L~~L~l~~-N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~-  311 (332)
T 2ft3_A          238 ---SFLPTLRELHLDN-NKLSRVPAGLPDLKLLQVVYLHT-NNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEV-  311 (332)
T ss_dssp             ---GGCTTCCEEECCS-SCCCBCCTTGGGCTTCCEEECCS-SCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGS-
T ss_pred             ---hCCCCCCEEECCC-CcCeecChhhhcCccCCEEECCC-CCCCccChhHccccccccccccccceEeecCccccccc-
Confidence               2677999999999 47889988899999999999999 78888876422        3578999999998542222 


Q ss_pred             ccCccccccccccceEEEcccE
Q 045021          434 KDGEQYWDLLTHIPRVRIHLPV  455 (461)
Q Consensus       434 ~~~~~~~~~~~~~~~~~~~~~~  455 (461)
                        ....+..+.++..+.+.+++
T Consensus       312 --~~~~~~~l~~L~~l~l~~n~  331 (332)
T 2ft3_A          312 --QPATFRCVTDRLAIQFGNYK  331 (332)
T ss_dssp             --CGGGGTTBCCSTTEEC----
T ss_pred             --Ccccccccchhhhhhccccc
Confidence              22345567778888877664

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.83  E-value=1.2e-21  Score=200.44  Aligned_cols=134  Identities=15%  Similarity=0.214  Sum_probs=79.5

Q ss_pred             hhhhhhhcCCccEEEecCCcCCc-cccccCCC-CCC-cCEEEecCCcCcc--cccC-CCCCCCccEEEEeecCCccccCc
Q 045021           21 QQQLCELSCRLEYLILRYCKGLV-KLPQSSLS-LSS-LREIEICRCHSLV--SFPE-VALPSKLKKIEIRECDALKSLPE   94 (461)
Q Consensus        21 l~~l~~~~~~L~~L~l~~~~~l~-~l~~~~~~-l~~-L~~L~l~~~~~l~--~~~~-~~~l~~L~~L~l~~~~~l~~~~~   94 (461)
                      +..+...+++|++|+++++. +. ..+..+.. ++. |++|++++|..+.  .++. ...+++|++|++++|. +.....
T Consensus       104 l~~l~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-~~~~~~  181 (592)
T 3ogk_B          104 VTEISNNLRQLKSVHFRRMI-VSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESS-FSEKDG  181 (592)
T ss_dssp             HHHHHHHCTTCCEEEEESCB-CCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCE-EECCCS
T ss_pred             HHHHHhhCCCCCeEEeeccE-ecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECcccc-ccCcch
Confidence            33333345899999999864 33 22333443 444 9999998886432  2222 3467899999998875 333221


Q ss_pred             cc---ccCCCCcccEEEeeCCCCCc-----ccccc-CCCCCccEEecccCCCceEeccCCCcccccccccccCccEEEEe
Q 045021           95 AW---MCGTNSSLEILKIWSCHSLP-----YIARV-QLPPSLKRLDISHCDNIRTLTVEDGIQSSSRRYTSYLLEKLEIW  165 (461)
Q Consensus        95 ~~---~~~~~~~L~~L~l~~~~~l~-----~~~~~-~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~  165 (461)
                      .+   ....+++|++|+++++. ++     .++.. ..+++|++|++.+|. +..++  ..+..      .++|+.|+++
T Consensus       182 ~~l~~~~~~~~~L~~L~L~~n~-~~~~~~~~l~~~~~~~~~L~~L~L~~~~-~~~l~--~~~~~------~~~L~~L~l~  251 (592)
T 3ogk_B          182 KWLHELAQHNTSLEVLNFYMTE-FAKISPKDLETIARNCRSLVSVKVGDFE-ILELV--GFFKA------AANLEEFCGG  251 (592)
T ss_dssp             HHHHHHHHHCCCCCEEECTTCC-CSSCCHHHHHHHHHHCTTCCEEECSSCB-GGGGH--HHHHH------CTTCCEEEEC
T ss_pred             hHHHHHHhcCCCccEEEeeccC-CCccCHHHHHHHHhhCCCCcEEeccCcc-HHHHH--HHHhh------hhHHHhhccc
Confidence            11   01113889999987743 33     12222 456889999998865 33344  33333      5578888776


Q ss_pred             c
Q 045021          166 D  166 (461)
Q Consensus       166 ~  166 (461)
                      .
T Consensus       252 ~  252 (592)
T 3ogk_B          252 S  252 (592)
T ss_dssp             B
T ss_pred             c
Confidence            5

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.82  E-value=6.6e-22  Score=202.23  Aligned_cols=399  Identities=14%  Similarity=0.060  Sum_probs=199.9

Q ss_pred             cCCccEEEecCCcCCcc---ccccCC------------CCCCcCEEEecCCcCcccc-cC-CCC-CC-CccEEEEeecCC
Q 045021           28 SCRLEYLILRYCKGLVK---LPQSSL------------SLSSLREIEICRCHSLVSF-PE-VAL-PS-KLKKIEIRECDA   88 (461)
Q Consensus        28 ~~~L~~L~l~~~~~l~~---l~~~~~------------~l~~L~~L~l~~~~~l~~~-~~-~~~-l~-~L~~L~l~~~~~   88 (461)
                      +++|++|++++|+....   +|..++            .+++|++|++++|. +.+. +. +.. ++ +|++|++++|..
T Consensus        72 ~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~~L~~L~L~~~~~  150 (592)
T 3ogk_B           72 FPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMI-VSDLDLDRLAKARADDLETLKLDKCSG  150 (592)
T ss_dssp             CTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCB-CCHHHHHHHHHHHGGGCCEEEEESCEE
T ss_pred             CCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccE-ecHHHHHHHHHhccccCcEEECcCCCC
Confidence            36777777776654321   121122            56677777777663 2211 11 222 23 377777766653


Q ss_pred             ccccCcccccCCCCcccEEEeeCCCCCccc-----ccc-CCCCCccEEecccCCCc----eEeccCCCcccccccccccC
Q 045021           89 LKSLPEAWMCGTNSSLEILKIWSCHSLPYI-----ARV-QLPPSLKRLDISHCDNI----RTLTVEDGIQSSSRRYTSYL  158 (461)
Q Consensus        89 l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~-----~~~-~~~~~L~~L~l~~~~~~----~~l~~~~~~~~~~~~~~~~~  158 (461)
                      +...........+++|++|++++|. +++.     +.. ..+++|++|+++++..-    ..++  ..+..      +++
T Consensus       151 ~~~~~l~~~~~~~~~L~~L~L~~~~-~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~--~~~~~------~~~  221 (592)
T 3ogk_B          151 FTTDGLLSIVTHCRKIKTLLMEESS-FSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLE--TIARN------CRS  221 (592)
T ss_dssp             EEHHHHHHHHHHCTTCSEEECTTCE-EECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHH--HHHHH------CTT
T ss_pred             cCHHHHHHHHhhCCCCCEEECcccc-ccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHH--HHHhh------CCC
Confidence            2221111111123667777776653 2211     111 34566777766654321    1111  11111      346


Q ss_pred             ccEEEEecCCCCeecccCCCCcchhhhcccCCCCCCccEEEEecCCch---hhhHHhhcCCCccceeeccccccceeccc
Q 045021          159 LEKLEIWDCPSLTCIFSKNELPATLESLEVGNQPPSLKSLNVWSCSKL---ESIAERLDNNTSLEMISILWCENLKFLPS  235 (461)
Q Consensus       159 L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l---~~~~~~~~~l~~L~~L~l~~~~~~~~~~~  235 (461)
                      |+.|++++| .+..      ++..+.      .+++|+.|.+......   ......+..+++|+.+++.++ ....++.
T Consensus       222 L~~L~L~~~-~~~~------l~~~~~------~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~l~~  287 (592)
T 3ogk_B          222 LVSVKVGDF-EILE------LVGFFK------AAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYM-GPNEMPI  287 (592)
T ss_dssp             CCEEECSSC-BGGG------GHHHHH------HCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTC-CTTTGGG
T ss_pred             CcEEeccCc-cHHH------HHHHHh------hhhHHHhhcccccccccchHHHHHHhhccccccccCcccc-chhHHHH
Confidence            666666662 2222      111111      1145666666542221   112224455666666666653 3334455


Q ss_pred             ccCCCCCccEEEecCCCCCcc--CCCCCCCCCCcceEeeccCccccccccccCCCCCccEEEecc------------cCC
Q 045021          236 GLHNLRQLQEIQLWGCENLVS--FPEGGLPCAKLSKLGIYRCERLEALPKGLHNLKSLKKLRIGG------------KLP  301 (461)
Q Consensus       236 ~~~~l~~L~~L~l~~~~~l~~--l~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~l~~L~~L~l~~------------~~~  301 (461)
                      .+..+++|++|++++|. +..  +......+++|++|++.++..-..++.....+++|++|++++            .+.
T Consensus       288 ~~~~~~~L~~L~Ls~~~-l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~  366 (592)
T 3ogk_B          288 LFPFAAQIRKLDLLYAL-LETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVS  366 (592)
T ss_dssp             GGGGGGGCCEEEETTCC-CCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCC
T ss_pred             HHhhcCCCcEEecCCCc-CCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccC
Confidence            56666777777777764 221  111223456777777764332233333345667777777771            111


Q ss_pred             --CcCC-CCCCCCcceEEeecCchhhHHhhhhcccCCCCcCEEEEecC--CCcccccCccccccCCCCCCCCCcceeecC
Q 045021          302 --SLEE-DGLPTNLHFLKIERNMEIWKSMIERGFHKFSSLRHLTIEGC--DDDMVSFPPEDRRLGTTLPLPASLASLTIG  376 (461)
Q Consensus       302 --~l~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~--~~~~~~i~~~~~~~~~~~~~~~~L~~L~l~  376 (461)
                        .+.. ...+++|++|+++.+. +++.........+++|++|++.++  ...+...|.+ .+.......+++|++|+++
T Consensus       367 ~~~~~~l~~~~~~L~~L~l~~~~-l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~-~~~~~~~~~~~~L~~L~L~  444 (592)
T 3ogk_B          367 QRGLIALAQGCQELEYMAVYVSD-ITNESLESIGTYLKNLCDFRLVLLDREERITDLPLD-NGVRSLLIGCKKLRRFAFY  444 (592)
T ss_dssp             HHHHHHHHHHCTTCSEEEEEESC-CCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCH-HHHHHHHHHCTTCCEEEEE
T ss_pred             HHHHHHHHhhCccCeEEEeecCC-ccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHH-HHHHHHHHhCCCCCEEEEe
Confidence              0111 1235678888884443 554443333344778888888742  1234432211 0000000235788888887


Q ss_pred             CCCC-Ccc-cccc-hhhccCCcEEEecCCCCCcccC--C-CCCcccccEeeccCCchhHHhhcccCccccccccccceEE
Q 045021          377 DFPN-LER-LSSS-IVDLQNLKYLKLYDCPKLKYFS--E-KGLPSSLLRLYIDECPLIEEKCRKDGEQYWDLLTHIPRVR  450 (461)
Q Consensus       377 ~~~~-l~~-i~~~-~~~~~~L~~L~l~~C~~l~~~~--~-~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~~~  450 (461)
                      .|.+ +.. .... ...+++|++|++++| +++...  . ..-+++|++|++++|+.-.....    .-+..+.+++.++
T Consensus       445 ~~~~~l~~~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~----~~~~~l~~L~~L~  519 (592)
T 3ogk_B          445 LRQGGLTDLGLSYIGQYSPNVRWMLLGYV-GESDEGLMEFSRGCPNLQKLEMRGCCFSERAIA----AAVTKLPSLRYLW  519 (592)
T ss_dssp             CCGGGCCHHHHHHHHHSCTTCCEEEECSC-CSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHH----HHHHHCSSCCEEE
T ss_pred             cCCCCccHHHHHHHHHhCccceEeeccCC-CCCHHHHHHHHhcCcccCeeeccCCCCcHHHHH----HHHHhcCccCeeE
Confidence            7653 221 1122 234888999999884 465421  1 12248999999999983211111    1123467888999


Q ss_pred             EcccEEec
Q 045021          451 IHLPVVFD  458 (461)
Q Consensus       451 ~~~~~~~~  458 (461)
                      +.++.+.+
T Consensus       520 ls~n~it~  527 (592)
T 3ogk_B          520 VQGYRASM  527 (592)
T ss_dssp             EESCBCCT
T ss_pred             CcCCcCCH
Confidence            98888654

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.82  E-value=1.1e-19  Score=171.19  Aligned_cols=215  Identities=24%  Similarity=0.320  Sum_probs=114.2

Q ss_pred             ccEEEEecCCchhhhHHhhcCCCccceeeccccccceecccccCCCCCccEEEecCCCCCccCCCCCCCCCCcceEeecc
Q 045021          195 LKSLNVWSCSKLESIAERLDNNTSLEMISILWCENLKFLPSGLHNLRQLQEIQLWGCENLVSFPEGGLPCAKLSKLGIYR  274 (461)
Q Consensus       195 L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~  274 (461)
                      ++.|++.++ .+..++..+..+++|++|++++| .+..+|..++.+++|++|++++| .+..+|.....+++|++|++++
T Consensus        83 l~~L~L~~n-~l~~lp~~l~~l~~L~~L~L~~n-~l~~lp~~~~~l~~L~~L~Ls~n-~l~~lp~~l~~l~~L~~L~L~~  159 (328)
T 4fcg_A           83 RVALELRSV-PLPQFPDQAFRLSHLQHMTIDAA-GLMELPDTMQQFAGLETLTLARN-PLRALPASIASLNRLRELSIRA  159 (328)
T ss_dssp             CCEEEEESS-CCSSCCSCGGGGTTCSEEEEESS-CCCCCCSCGGGGTTCSEEEEESC-CCCCCCGGGGGCTTCCEEEEEE
T ss_pred             eeEEEccCC-CchhcChhhhhCCCCCEEECCCC-CccchhHHHhccCCCCEEECCCC-ccccCcHHHhcCcCCCEEECCC
Confidence            444444442 23333333444445555555444 22244444455555555555554 2334444334444555555555


Q ss_pred             CccccccccccC---------CCCCccEEEecc-cCCCcCCC-CCCCCcceEEeecCchhhHHhhhhcccCCCCcCEEEE
Q 045021          275 CERLEALPKGLH---------NLKSLKKLRIGG-KLPSLEED-GLPTNLHFLKIERNMEIWKSMIERGFHKFSSLRHLTI  343 (461)
Q Consensus       275 c~~~~~~~~~~~---------~l~~L~~L~l~~-~~~~l~~~-~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l  343 (461)
                      |.....+|..+.         .+++|++|++++ .+..++.. ..+++|++|++++|.. .. .+. .+..+++|++|++
T Consensus       160 n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l-~~-l~~-~l~~l~~L~~L~L  236 (328)
T 4fcg_A          160 CPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPL-SA-LGP-AIHHLPKLEELDL  236 (328)
T ss_dssp             ETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCC-CC-CCG-GGGGCTTCCEEEC
T ss_pred             CCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCC-Cc-Cch-hhccCCCCCEEEC
Confidence            444444444332         356666666666 55455432 3445666666666652 21 111 3556677777777


Q ss_pred             ecCCCcccccCccccccCCCCCCCCCcceeecCCCCCCcccccchhhccCCcEEEecCCCCCcccCCC-CCcccccEeec
Q 045021          344 EGCDDDMVSFPPEDRRLGTTLPLPASLASLTIGDFPNLERLSSSIVDLQNLKYLKLYDCPKLKYFSEK-GLPSSLLRLYI  422 (461)
Q Consensus       344 ~~~~~~~~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~L~~L~l~~C~~l~~~~~~-~~~~~L~~L~i  422 (461)
                      ++| .....++.. +      ..+++|++|++++|+....+|..+..+++|++|++++|+.+..+|.. +-.++++.+++
T Consensus       237 s~n-~~~~~~p~~-~------~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l  308 (328)
T 4fcg_A          237 RGC-TALRNYPPI-F------GGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILV  308 (328)
T ss_dssp             TTC-TTCCBCCCC-T------TCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEEC
T ss_pred             cCC-cchhhhHHH-h------cCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeC
Confidence            775 334444543 3      24567777777776666667666677777777777777766666653 12456666655


Q ss_pred             c
Q 045021          423 D  423 (461)
Q Consensus       423 ~  423 (461)
                      .
T Consensus       309 ~  309 (328)
T 4fcg_A          309 P  309 (328)
T ss_dssp             C
T ss_pred             C
Confidence            4

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.81  E-value=5e-22  Score=196.75  Aligned_cols=373  Identities=19%  Similarity=0.187  Sum_probs=203.8

Q ss_pred             CCccEEEecCCcCCccc--cccCCCCCCcCEEEecCCcCcc-----cccC-CCCCCCccEEEEeecCCccccCc-ccccC
Q 045021           29 CRLEYLILRYCKGLVKL--PQSSLSLSSLREIEICRCHSLV-----SFPE-VALPSKLKKIEIRECDALKSLPE-AWMCG   99 (461)
Q Consensus        29 ~~L~~L~l~~~~~l~~l--~~~~~~l~~L~~L~l~~~~~l~-----~~~~-~~~l~~L~~L~l~~~~~l~~~~~-~~~~~   99 (461)
                      ++|++|+++++. +...  ...+..+++|++|++++|. +.     .++. +..+++|++|+++++. +.+... .+...
T Consensus         3 ~~l~~L~Ls~~~-l~~~~~~~~~~~~~~L~~L~L~~~~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~~~~~~~l~~~   79 (461)
T 1z7x_W            3 LDIQSLDIQCEE-LSDARWAELLPLLQQCQVVRLDDCG-LTEARCKDISSALRVNPALAELNLRSNE-LGDVGVHCVLQG   79 (461)
T ss_dssp             EEEEEEEEESCC-CCHHHHHHHHHHHTTCSEEEEESSC-CCHHHHHHHHHHHHTCTTCCEEECTTCC-CHHHHHHHHHHT
T ss_pred             ccceehhhhhcc-cCchhHHHHHhhcCCccEEEccCCC-CCHHHHHHHHHHHHhCCCcCEEeCCCCc-CChHHHHHHHHH
Confidence            566666666533 3322  2224556666666666653 32     2222 4455666666666654 333111 11110


Q ss_pred             CCC----cccEEEeeCCCCCcc-----cc-ccCCCCCccEEecccCCCceEe-ccCCCcccccccccccCccEEEEecCC
Q 045021          100 TNS----SLEILKIWSCHSLPY-----IA-RVQLPPSLKRLDISHCDNIRTL-TVEDGIQSSSRRYTSYLLEKLEIWDCP  168 (461)
Q Consensus       100 ~~~----~L~~L~l~~~~~l~~-----~~-~~~~~~~L~~L~l~~~~~~~~l-~~~~~~~~~~~~~~~~~L~~L~l~~~~  168 (461)
                       ++    +|++|++++|. ++.     ++ ....+++|++|+++++. +... +  ..+.... ....++|+.|++++ +
T Consensus        80 -l~~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~--~~l~~~l-~~~~~~L~~L~L~~-n  152 (461)
T 1z7x_W           80 -LQTPSCKIQKLSLQNCC-LTGAGCGVLSSTLRTLPTLQELHLSDNL-LGDAGL--QLLCEGL-LDPQCRLEKLQLEY-C  152 (461)
T ss_dssp             -TCSTTCCCCEEECTTSC-CBGGGHHHHHHHTTSCTTCCEEECCSSB-CHHHHH--HHHHHHH-TSTTCCCCEEECTT-S
T ss_pred             -HhhCCCceeEEEccCCC-CCHHHHHHHHHHHccCCceeEEECCCCc-CchHHH--HHHHHHH-hcCCCcceEEECCC-C
Confidence             12    56666666643 332     11 12455667777776654 2210 0  0000000 00022577777777 3


Q ss_pred             CCeecccCCCCcchhhhcccCCCCCCccEEEEecCCchhhhHHhhc-----CCCccceeeccccccce----ecccccCC
Q 045021          169 SLTCIFSKNELPATLESLEVGNQPPSLKSLNVWSCSKLESIAERLD-----NNTSLEMISILWCENLK----FLPSGLHN  239 (461)
Q Consensus       169 ~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~-----~l~~L~~L~l~~~~~~~----~~~~~~~~  239 (461)
                      .++. .....++..+      ..+++|++|+++++...+..+..+.     ..++|++|++++|..-.    .++..+..
T Consensus       153 ~l~~-~~~~~l~~~l------~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~  225 (461)
T 1z7x_W          153 SLSA-ASCEPLASVL------RAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVAS  225 (461)
T ss_dssp             CCBG-GGHHHHHHHH------HHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHH
T ss_pred             CCCH-HHHHHHHHHH------hhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHh
Confidence            4433 1111111111      1125688888877643222222221     35688888888773222    24556667


Q ss_pred             CCCccEEEecCCCCCccC------CCCCCCCCCcceEeeccCccccc-----cccccCCCCCccEEEecc-cCC-----C
Q 045021          240 LRQLQEIQLWGCENLVSF------PEGGLPCAKLSKLGIYRCERLEA-----LPKGLHNLKSLKKLRIGG-KLP-----S  302 (461)
Q Consensus       240 l~~L~~L~l~~~~~l~~l------~~~~~~~~~L~~L~l~~c~~~~~-----~~~~~~~l~~L~~L~l~~-~~~-----~  302 (461)
                      +++|++|++++|. +...      +.....+++|++|++++| .++.     ++..+..+++|++|++++ .+.     .
T Consensus       226 ~~~L~~L~Ls~n~-l~~~~~~~l~~~~~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~  303 (461)
T 1z7x_W          226 KASLRELALGSNK-LGDVGMAELCPGLLHPSSRLRTLWIWEC-GITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARL  303 (461)
T ss_dssp             CTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTS-CCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHH
T ss_pred             CCCccEEeccCCc-CChHHHHHHHHHHhcCCCCceEEECcCC-CCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHH
Confidence            7888888888873 3321      112223568889988887 4443     566677788999999988 432     1


Q ss_pred             cCCC--CCCCCcceEEeecCchhhHHh---hhhcccCCCCcCEEEEecCCCcccccCccccccCCCCCCCCCcceeecCC
Q 045021          303 LEED--GLPTNLHFLKIERNMEIWKSM---IERGFHKFSSLRHLTIEGCDDDMVSFPPEDRRLGTTLPLPASLASLTIGD  377 (461)
Q Consensus       303 l~~~--~~~~~L~~L~l~~~~~l~~~~---~~~~~~~l~~L~~L~l~~~~~~~~~i~~~~~~~~~~~~~~~~L~~L~l~~  377 (461)
                      +...  ...++|++|++++|. ++...   ....+..+++|++|++++|  .+.......++.. -....++|++|++++
T Consensus       304 l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n--~i~~~~~~~l~~~-l~~~~~~L~~L~L~~  379 (461)
T 1z7x_W          304 LCETLLEPGCQLESLWVKSCS-FTAACCSHFSSVLAQNRFLLELQISNN--RLEDAGVRELCQG-LGQPGSVLRVLWLAD  379 (461)
T ss_dssp             HHHHHTSTTCCCCEEECTTSC-CBGGGHHHHHHHHHHCSSCCEEECCSS--BCHHHHHHHHHHH-HTSTTCCCCEEECTT
T ss_pred             HHHHhccCCccceeeEcCCCC-CchHHHHHHHHHHhhCCCccEEEccCC--ccccccHHHHHHH-HcCCCCceEEEECCC
Confidence            2111  233589999999997 33221   1224667899999999998  5544322101100 001256999999999


Q ss_pred             CCCCc-----ccccchhhccCCcEEEecCCCCCcccCCC-------CCcccccEeeccCCc
Q 045021          378 FPNLE-----RLSSSIVDLQNLKYLKLYDCPKLKYFSEK-------GLPSSLLRLYIDECP  426 (461)
Q Consensus       378 ~~~l~-----~i~~~~~~~~~L~~L~l~~C~~l~~~~~~-------~~~~~L~~L~i~~c~  426 (461)
                      | .+.     .++..+..+++|++|++++ +.++.....       ....+|+.|.+.++.
T Consensus       380 n-~i~~~~~~~l~~~l~~~~~L~~L~l~~-N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~  438 (461)
T 1z7x_W          380 C-DVSDSSCSSLAATLLANHSLRELDLSN-NCLGDAGILQLVESVRQPGCLLEQLVLYDIY  438 (461)
T ss_dssp             S-CCCHHHHHHHHHHHHHCCCCCEEECCS-SSCCHHHHHHHHHHHTSTTCCCCEEECTTCC
T ss_pred             C-CCChhhHHHHHHHHHhCCCccEEECCC-CCCCHHHHHHHHHHhccCCcchhheeecccc
Confidence            6 565     5677788899999999999 567654221       112367777776653

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.81  E-value=2.9e-21  Score=197.58  Aligned_cols=59  Identities=15%  Similarity=0.256  Sum_probs=26.1

Q ss_pred             CCCcceeecCCCCCCccc-c-cchhhccCCcEEEecCCCCCcccCCC---CCcccccEeeccCCch
Q 045021          367 PASLASLTIGDFPNLERL-S-SSIVDLQNLKYLKLYDCPKLKYFSEK---GLPSSLLRLYIDECPL  427 (461)
Q Consensus       367 ~~~L~~L~l~~~~~l~~i-~-~~~~~~~~L~~L~l~~C~~l~~~~~~---~~~~~L~~L~i~~c~~  427 (461)
                      +++|+.|++++|. +... . .....+++|++|++++|+. +.....   ..+++|++|++++|+.
T Consensus       455 ~~~L~~L~L~~~~-i~~~~~~~l~~~~~~L~~L~L~~n~~-~~~~~~~~~~~l~~L~~L~l~~~~~  518 (594)
T 2p1m_B          455 AKKMEMLSVAFAG-DSDLGMHHVLSGCDSLRKLEIRDCPF-GDKALLANASKLETMRSLWMSSCSV  518 (594)
T ss_dssp             CTTCCEEEEESCC-SSHHHHHHHHHHCTTCCEEEEESCSC-CHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred             chhccEeeccCCC-CcHHHHHHHHhcCCCcCEEECcCCCC-cHHHHHHHHHhCCCCCEEeeeCCCC
Confidence            3455666665542 3211 1 1124455566666655443 221110   1135556666655543

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.80  E-value=1.4e-21  Score=199.86  Aligned_cols=395  Identities=16%  Similarity=0.126  Sum_probs=226.3

Q ss_pred             CCccEEEecCCcCCcccc---c------------cCCCCCCcCEEEecCCcCcccccC-CC-CCCCccEEEEeecCCccc
Q 045021           29 CRLEYLILRYCKGLVKLP---Q------------SSLSLSSLREIEICRCHSLVSFPE-VA-LPSKLKKIEIRECDALKS   91 (461)
Q Consensus        29 ~~L~~L~l~~~~~l~~l~---~------------~~~~l~~L~~L~l~~~~~l~~~~~-~~-~l~~L~~L~l~~~~~l~~   91 (461)
                      ++|++|++++++.+.++.   .            ....+++|++|++++|..-...+. +. .+++|++|++++|..+..
T Consensus        66 ~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~  145 (594)
T 2p1m_B           66 PKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFST  145 (594)
T ss_dssp             TTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEH
T ss_pred             CCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCH
Confidence            888888888876543221   1            123577888888888742221111 32 477888888888754544


Q ss_pred             --cCcccccCCCCcccEEEeeCCCCCcc-----cccc-CCCCCccEEecccCC-CceEeccCCCcccccccccccCccEE
Q 045021           92 --LPEAWMCGTNSSLEILKIWSCHSLPY-----IARV-QLPPSLKRLDISHCD-NIRTLTVEDGIQSSSRRYTSYLLEKL  162 (461)
Q Consensus        92 --~~~~~~~~~~~~L~~L~l~~~~~l~~-----~~~~-~~~~~L~~L~l~~~~-~~~~l~~~~~~~~~~~~~~~~~L~~L  162 (461)
                        ++.....  +++|++|++++|. +++     ++.. ..+++|++|+++++. .+..    ..+......  +++|+.|
T Consensus       146 ~~l~~~~~~--~~~L~~L~L~~~~-i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~----~~l~~l~~~--~~~L~~L  216 (594)
T 2p1m_B          146 DGLAAIAAT--CRNLKELDLRESD-VDDVSGHWLSHFPDTYTSLVSLNISCLASEVSF----SALERLVTR--CPNLKSL  216 (594)
T ss_dssp             HHHHHHHHH--CTTCCEEECTTCE-EECCCGGGGGGSCTTCCCCCEEECTTCCSCCCH----HHHHHHHHH--CTTCCEE
T ss_pred             HHHHHHHHh--CCCCCEEeCcCCc-cCCcchHHHHHHhhcCCcCcEEEecccCCcCCH----HHHHHHHHh--CCCCcEE
Confidence              2222222  3788888888765 332     2222 356778888888765 1110    111110011  3578888


Q ss_pred             EEecCCCCeecccCCCCcchhhhcccCCCCCCccEEEEecCCc------hhhhHHhhcCCCcccee-eccccccceeccc
Q 045021          163 EIWDCPSLTCIFSKNELPATLESLEVGNQPPSLKSLNVWSCSK------LESIAERLDNNTSLEMI-SILWCENLKFLPS  235 (461)
Q Consensus       163 ~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~------l~~~~~~~~~l~~L~~L-~l~~~~~~~~~~~  235 (461)
                      ++++|..+..      ++..+      ..+++|+.|.+..+..      +..++..+.++++|+.+ .+... ....++.
T Consensus       217 ~L~~~~~~~~------l~~~~------~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~-~~~~l~~  283 (594)
T 2p1m_B          217 KLNRAVPLEK------LATLL------QRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDA-VPAYLPA  283 (594)
T ss_dssp             ECCTTSCHHH------HHHHH------HHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTC-CGGGGGG
T ss_pred             ecCCCCcHHH------HHHHH------hcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCccc-chhhHHH
Confidence            8877644332      11111      1125677777655422      23344466777788877 34332 2233444


Q ss_pred             ccCCCCCccEEEecCCCCCcc--CCCCCCCCCCcceEeeccCccccccccccCCCCCccEEEecc----------cCCC-
Q 045021          236 GLHNLRQLQEIQLWGCENLVS--FPEGGLPCAKLSKLGIYRCERLEALPKGLHNLKSLKKLRIGG----------KLPS-  302 (461)
Q Consensus       236 ~~~~l~~L~~L~l~~~~~l~~--l~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~l~~L~~L~l~~----------~~~~-  302 (461)
                      .+..+++|++|++++|. +..  +......+++|++|++.+|.....++.....+++|++|++++          .+.. 
T Consensus       284 ~~~~~~~L~~L~L~~~~-l~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~  362 (594)
T 2p1m_B          284 VYSVCSRLTTLNLSYAT-VQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQ  362 (594)
T ss_dssp             GHHHHTTCCEEECTTCC-CCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHH
T ss_pred             HHHhhCCCCEEEccCCC-CCHHHHHHHHhcCCCcCEEeCcCccCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHH
Confidence            44567899999999986 432  111234567999999998833223333344689999999932          1111 


Q ss_pred             -cCCC-CCCCCcceEEeecCchhhHHhhhhcccCCCCcCEEEEe-----cCCCcccccCccccccCCCCCCCCCcceeec
Q 045021          303 -LEED-GLPTNLHFLKIERNMEIWKSMIERGFHKFSSLRHLTIE-----GCDDDMVSFPPEDRRLGTTLPLPASLASLTI  375 (461)
Q Consensus       303 -l~~~-~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~-----~~~~~~~~i~~~~~~~~~~~~~~~~L~~L~l  375 (461)
                       +... ..+++|++|.+.++. +++.........+++|++|++.     +| ..+...+.+ .+.......+++|++|++
T Consensus       363 ~l~~l~~~~~~L~~L~~~~~~-l~~~~~~~l~~~~~~L~~L~L~~~~~~~~-~~l~~~~~~-~~~~~l~~~~~~L~~L~L  439 (594)
T 2p1m_B          363 GLVSVSMGCPKLESVLYFCRQ-MTNAALITIARNRPNMTRFRLCIIEPKAP-DYLTLEPLD-IGFGAIVEHCKDLRRLSL  439 (594)
T ss_dssp             HHHHHHHHCTTCCEEEEEESC-CCHHHHHHHHHHCTTCCEEEEEESSTTCC-CTTTCCCTH-HHHHHHHHHCTTCCEEEC
T ss_pred             HHHHHHHhchhHHHHHHhcCC-cCHHHHHHHHhhCCCcceeEeecccCCCc-ccccCCchh-hHHHHHHhhCCCccEEee
Confidence             1111 235799999665544 6555444444568999999999     33 344433221 000000024579999999


Q ss_pred             CCCCCCccc-ccchh-hccCCcEEEecCCCCCcccCCCC---CcccccEeeccCCchhHHhhcccCccccccccccceEE
Q 045021          376 GDFPNLERL-SSSIV-DLQNLKYLKLYDCPKLKYFSEKG---LPSSLLRLYIDECPLIEEKCRKDGEQYWDLLTHIPRVR  450 (461)
Q Consensus       376 ~~~~~l~~i-~~~~~-~~~~L~~L~l~~C~~l~~~~~~~---~~~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~~~  450 (461)
                      ++  .+... ...+. .+++|+.|++++|. ++......   .+++|++|++++|+.-......    -...+.+++.++
T Consensus       440 ~~--~l~~~~~~~l~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~----~~~~l~~L~~L~  512 (594)
T 2p1m_B          440 SG--LLTDKVFEYIGTYAKKMEMLSVAFAG-DSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLA----NASKLETMRSLW  512 (594)
T ss_dssp             CS--SCCHHHHHHHHHHCTTCCEEEEESCC-SSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHH----TGGGGGGSSEEE
T ss_pred             cC--cccHHHHHHHHHhchhccEeeccCCC-CcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHH----HHHhCCCCCEEe
Confidence            87  44332 23333 48999999999954 65432211   1589999999999863222211    122356888888


Q ss_pred             EcccEE
Q 045021          451 IHLPVV  456 (461)
Q Consensus       451 ~~~~~~  456 (461)
                      +.++.+
T Consensus       513 l~~~~~  518 (594)
T 2p1m_B          513 MSSCSV  518 (594)
T ss_dssp             EESSCC
T ss_pred             eeCCCC
Confidence            888765

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.80  E-value=1.8e-19  Score=168.76  Aligned_cols=250  Identities=17%  Similarity=0.110  Sum_probs=139.3

Q ss_pred             CCccEEEecCCcCCc--cccccCCCCCCcCEEEecCCcCcc-cccC-CCCCCCccEEEEeecCCccccCcccccCCCCcc
Q 045021           29 CRLEYLILRYCKGLV--KLPQSSLSLSSLREIEICRCHSLV-SFPE-VALPSKLKKIEIRECDALKSLPEAWMCGTNSSL  104 (461)
Q Consensus        29 ~~L~~L~l~~~~~l~--~l~~~~~~l~~L~~L~l~~~~~l~-~~~~-~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L  104 (461)
                      .++++|+++++.--.  .+|..+..+++|++|++++++.+. .+|. ++.+++|++|+++++.....+|..+...  ++|
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l--~~L  127 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQI--KTL  127 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGC--TTC
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCC--CCC
Confidence            345555555533211  345555555555555555312222 3343 5555555555555544222444444433  455


Q ss_pred             cEEEeeCCCCCccccccCCCCCccEEecccCCCceEeccCCCcccccccccccCccEEEEecCCCCeecccCCCCcchhh
Q 045021          105 EILKIWSCHSLPYIARVQLPPSLKRLDISHCDNIRTLTVEDGIQSSSRRYTSYLLEKLEIWDCPSLTCIFSKNELPATLE  184 (461)
Q Consensus       105 ~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~  184 (461)
                      ++|++++                       +.....+|  ..+..      +++|+.|++++ +.++..+|...      
T Consensus       128 ~~L~Ls~-----------------------N~l~~~~p--~~~~~------l~~L~~L~L~~-N~l~~~~p~~l------  169 (313)
T 1ogq_A          128 VTLDFSY-----------------------NALSGTLP--PSISS------LPNLVGITFDG-NRISGAIPDSY------  169 (313)
T ss_dssp             CEEECCS-----------------------SEEESCCC--GGGGG------CTTCCEEECCS-SCCEEECCGGG------
T ss_pred             CEEeCCC-----------------------CccCCcCC--hHHhc------CCCCCeEECcC-CcccCcCCHHH------
Confidence            5555544                       33111233  33333      44566666655 44442122111      


Q ss_pred             hcccCCCCCCccEEEEecCCchhhhHHhhcCCCccceeeccccccceecccccCCCCCccEEEecCCCCCccCCCCCCCC
Q 045021          185 SLEVGNQPPSLKSLNVWSCSKLESIAERLDNNTSLEMISILWCENLKFLPSGLHNLRQLQEIQLWGCENLVSFPEGGLPC  264 (461)
Q Consensus       185 ~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~  264 (461)
                          ....++|+.|++.++......+..+..+. |++|++++|......+..+..+++|+.|++++|......+. ...+
T Consensus       170 ----~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l  243 (313)
T 1ogq_A          170 ----GSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLS  243 (313)
T ss_dssp             ----GCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCC
T ss_pred             ----hhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-cccc
Confidence                11112566666666543334555566665 88888887754455667778888888888888743223332 4445


Q ss_pred             CCcceEeeccCccccccccccCCCCCccEEEecc-cCC-CcCCCCCCCCcceEEeecCchhh
Q 045021          265 AKLSKLGIYRCERLEALPKGLHNLKSLKKLRIGG-KLP-SLEEDGLPTNLHFLKIERNMEIW  324 (461)
Q Consensus       265 ~~L~~L~l~~c~~~~~~~~~~~~l~~L~~L~l~~-~~~-~l~~~~~~~~L~~L~l~~~~~l~  324 (461)
                      ++|++|++++|.....+|..+..+++|++|++++ .+. .+|....+++|+.+++.+|+.+.
T Consensus       244 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~lc  305 (313)
T 1ogq_A          244 KNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLC  305 (313)
T ss_dssp             TTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEE
T ss_pred             CCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhcCCCCcc
Confidence            6888888888765556777788888888888887 443 45555566777777777776443

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.80  E-value=6.5e-18  Score=171.37  Aligned_cols=254  Identities=27%  Similarity=0.326  Sum_probs=154.2

Q ss_pred             CCccEEEecCCcCCccccccCCCCCCcCEEEecCCcCcccccCCCCCCCccEEEEeecCCccccCcccccCCCCcccEEE
Q 045021           29 CRLEYLILRYCKGLVKLPQSSLSLSSLREIEICRCHSLVSFPEVALPSKLKKIEIRECDALKSLPEAWMCGTNSSLEILK  108 (461)
Q Consensus        29 ~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~  108 (461)
                      .++++|++++ .++..+|..+.  ++|++|++++| .+..+|.  .+++|++|++++|. ++.+|.   .  .++|++|+
T Consensus        40 ~~l~~L~ls~-n~L~~lp~~l~--~~L~~L~L~~N-~l~~lp~--~l~~L~~L~Ls~N~-l~~lp~---~--l~~L~~L~  107 (622)
T 3g06_A           40 NGNAVLNVGE-SGLTTLPDCLP--AHITTLVIPDN-NLTSLPA--LPPELRTLEVSGNQ-LTSLPV---L--PPGLLELS  107 (622)
T ss_dssp             HCCCEEECCS-SCCSCCCSCCC--TTCSEEEECSC-CCSCCCC--CCTTCCEEEECSCC-CSCCCC---C--CTTCCEEE
T ss_pred             CCCcEEEecC-CCcCccChhhC--CCCcEEEecCC-CCCCCCC--cCCCCCEEEcCCCc-CCcCCC---C--CCCCCEEE
Confidence            5699999998 55788888665  89999999997 5777876  67899999999976 788876   2  38899999


Q ss_pred             eeCCCCCccccccCCCCCccEEecccCCCceEeccCCCcccccccccccCccEEEEecCCCCeecccCCCCcchhhhccc
Q 045021          109 IWSCHSLPYIARVQLPPSLKRLDISHCDNIRTLTVEDGIQSSSRRYTSYLLEKLEIWDCPSLTCIFSKNELPATLESLEV  188 (461)
Q Consensus       109 l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~  188 (461)
                      ++++ .++.++.  .+++|+.|+++++. +..+|  ..+         ++|+.|++++ +.++. ++..           
T Consensus       108 Ls~N-~l~~l~~--~l~~L~~L~L~~N~-l~~lp--~~l---------~~L~~L~Ls~-N~l~~-l~~~-----------  159 (622)
T 3g06_A          108 IFSN-PLTHLPA--LPSGLCKLWIFGNQ-LTSLP--VLP---------PGLQELSVSD-NQLAS-LPAL-----------  159 (622)
T ss_dssp             ECSC-CCCCCCC--CCTTCCEEECCSSC-CSCCC--CCC---------TTCCEEECCS-SCCSC-CCCC-----------
T ss_pred             CcCC-cCCCCCC--CCCCcCEEECCCCC-CCcCC--CCC---------CCCCEEECcC-CcCCC-cCCc-----------
Confidence            9884 5666665  66788888888864 55565  432         3688888887 56554 3321           


Q ss_pred             CCCCCCccEEEEecCCchhhhHHhhcCCCccceeeccccccceecccccCCCCCccEEEecCCCCCccCCCCCCCCCCcc
Q 045021          189 GNQPPSLKSLNVWSCSKLESIAERLDNNTSLEMISILWCENLKFLPSGLHNLRQLQEIQLWGCENLVSFPEGGLPCAKLS  268 (461)
Q Consensus       189 ~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~  268 (461)
                         +++|+.|++.++ .+..++   ..+++|+.|++++| .+..+|..   +++|+.|++++| .+..++..   +++|+
T Consensus       160 ---~~~L~~L~L~~N-~l~~l~---~~~~~L~~L~Ls~N-~l~~l~~~---~~~L~~L~L~~N-~l~~l~~~---~~~L~  224 (622)
T 3g06_A          160 ---PSELCKLWAYNN-QLTSLP---MLPSGLQELSVSDN-QLASLPTL---PSELYKLWAYNN-RLTSLPAL---PSGLK  224 (622)
T ss_dssp             ---CTTCCEEECCSS-CCSCCC---CCCTTCCEEECCSS-CCSCCCCC---CTTCCEEECCSS-CCSSCCCC---CTTCC
T ss_pred             ---cCCCCEEECCCC-CCCCCc---ccCCCCcEEECCCC-CCCCCCCc---cchhhEEECcCC-cccccCCC---CCCCC
Confidence               135777777663 333343   34566666666655 33334432   255666666655 33444331   23566


Q ss_pred             eEeeccCccccccccccCCCCCccEEEecc-cCCCcCCCCCCCCcceEEeecCchhhHHhhhhcccCCCCcCEEEEecC
Q 045021          269 KLGIYRCERLEALPKGLHNLKSLKKLRIGG-KLPSLEEDGLPTNLHFLKIERNMEIWKSMIERGFHKFSSLRHLTIEGC  346 (461)
Q Consensus       269 ~L~l~~c~~~~~~~~~~~~l~~L~~L~l~~-~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~  346 (461)
                      +|++++| .++.+|   ..+++|++|++++ .+..++.  .+++|+.|++++|. +. ..+ ..+..+++|+.|++++|
T Consensus       225 ~L~Ls~N-~L~~lp---~~l~~L~~L~Ls~N~L~~lp~--~~~~L~~L~Ls~N~-L~-~lp-~~l~~l~~L~~L~L~~N  294 (622)
T 3g06_A          225 ELIVSGN-RLTSLP---VLPSELKELMVSGNRLTSLPM--LPSGLLSLSVYRNQ-LT-RLP-ESLIHLSSETTVNLEGN  294 (622)
T ss_dssp             EEECCSS-CCSCCC---CCCTTCCEEECCSSCCSCCCC--CCTTCCEEECCSSC-CC-SCC-GGGGGSCTTCEEECCSC
T ss_pred             EEEccCC-ccCcCC---CCCCcCcEEECCCCCCCcCCc--ccccCcEEeCCCCC-CC-cCC-HHHhhccccCEEEecCC
Confidence            6666553 344444   2345555555555 4444443  34445555555543 22 111 12344444555555444

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.79  E-value=3.5e-18  Score=167.95  Aligned_cols=219  Identities=16%  Similarity=0.187  Sum_probs=140.1

Q ss_pred             CccEEEEecCCCCeecccCCCCcchhhhcccCCCCCCccEEEEecCCchhhhHHhhcCCCccceeeccccccceecc-cc
Q 045021          158 LLEKLEIWDCPSLTCIFSKNELPATLESLEVGNQPPSLKSLNVWSCSKLESIAERLDNNTSLEMISILWCENLKFLP-SG  236 (461)
Q Consensus       158 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~  236 (461)
                      +++.|++++ ++++. ++...+...          ++|+.|++.++......+..+..+++|++|++++| .+..++ ..
T Consensus        65 ~l~~L~L~~-n~i~~-~~~~~~~~l----------~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~  131 (440)
T 3zyj_A           65 NTRLLNLHE-NQIQI-IKVNSFKHL----------RHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN-RLTTIPNGA  131 (440)
T ss_dssp             TCSEEECCS-CCCCE-ECTTTTSSC----------SSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSS-CCSSCCTTT
T ss_pred             CCcEEEccC-CcCCe-eCHHHhhCC----------CCCCEEECCCCcCCccChhhccCCccCCEEECCCC-cCCeeCHhH
Confidence            566666666 55555 333333322          56777777664332223346677777777777776 444444 35


Q ss_pred             cCCCCCccEEEecCCCCCccCCC-CCCCCCCcceEeeccCcccccccc-ccCCCCCccEEEecc-cCCCcCCCCCCCCcc
Q 045021          237 LHNLRQLQEIQLWGCENLVSFPE-GGLPCAKLSKLGIYRCERLEALPK-GLHNLKSLKKLRIGG-KLPSLEEDGLPTNLH  313 (461)
Q Consensus       237 ~~~l~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~c~~~~~~~~-~~~~l~~L~~L~l~~-~~~~l~~~~~~~~L~  313 (461)
                      +..+++|++|++++| .+..++. ....+++|++|++++|..+..++. .+..+++|++|++++ .+..++....+++|+
T Consensus       132 ~~~l~~L~~L~L~~N-~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~  210 (440)
T 3zyj_A          132 FVYLSKLKELWLRNN-PIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLD  210 (440)
T ss_dssp             SCSCSSCCEEECCSC-CCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCCCTTCSSCC
T ss_pred             hhccccCceeeCCCC-cccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccccccCCCcccC
Confidence            677777777777776 3444444 444566777777777766666654 567777888888877 777777666677788


Q ss_pred             eEEeecCchhhHHhhhhcccCCCCcCEEEEecCCCcccccCccccccCCCCCCCCCcceeecCCCCCCcccc-cchhhcc
Q 045021          314 FLKIERNMEIWKSMIERGFHKFSSLRHLTIEGCDDDMVSFPPEDRRLGTTLPLPASLASLTIGDFPNLERLS-SSIVDLQ  392 (461)
Q Consensus       314 ~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~-~~~~~~~  392 (461)
                      +|++++|. +.. .....+..+++|++|++++|  .+..++...+      ..+++|+.|++++ +.++.++ ..+..++
T Consensus       211 ~L~Ls~N~-l~~-~~~~~~~~l~~L~~L~L~~n--~l~~~~~~~~------~~l~~L~~L~L~~-N~l~~~~~~~~~~l~  279 (440)
T 3zyj_A          211 ELDLSGNH-LSA-IRPGSFQGLMHLQKLWMIQS--QIQVIERNAF------DNLQSLVEINLAH-NNLTLLPHDLFTPLH  279 (440)
T ss_dssp             EEECTTSC-CCE-ECTTTTTTCTTCCEEECTTC--CCCEECTTSS------TTCTTCCEEECTT-SCCCCCCTTTTSSCT
T ss_pred             EEECCCCc-cCc-cChhhhccCccCCEEECCCC--ceeEEChhhh------cCCCCCCEEECCC-CCCCccChhHhcccc
Confidence            88887775 332 22234667778888888876  6666655434      2566788888887 4666665 4456677


Q ss_pred             CCcEEEecC
Q 045021          393 NLKYLKLYD  401 (461)
Q Consensus       393 ~L~~L~l~~  401 (461)
                      +|+.|++++
T Consensus       280 ~L~~L~L~~  288 (440)
T 3zyj_A          280 HLERIHLHH  288 (440)
T ss_dssp             TCCEEECCS
T ss_pred             CCCEEEcCC
Confidence            788888777

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.78  E-value=4.8e-18  Score=167.54  Aligned_cols=196  Identities=21%  Similarity=0.229  Sum_probs=116.0

Q ss_pred             CCccEEEEecCCchhhhHHhhcCCCccceeeccccccceecc-cccCCCCCccEEEecCCCCCccCCC-CCCCCCCcceE
Q 045021          193 PSLKSLNVWSCSKLESIAERLDNNTSLEMISILWCENLKFLP-SGLHNLRQLQEIQLWGCENLVSFPE-GGLPCAKLSKL  270 (461)
Q Consensus       193 ~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L  270 (461)
                      ++|+.|++.++..-...+..+..+++|++|++++|. +..++ ..+..+++|++|++++| .+..++. ....+++|++|
T Consensus        99 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L  176 (452)
T 3zyi_A           99 HHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW-LTVIPSGAFEYLSKLRELWLRNN-PIESIPSYAFNRVPSLMRL  176 (452)
T ss_dssp             TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CSBCCTTTSSSCTTCCEEECCSC-CCCEECTTTTTTCTTCCEE
T ss_pred             CCCCEEECCCCccCCcChhhccCcccCCEEECCCCc-CCccChhhhcccCCCCEEECCCC-CcceeCHhHHhcCCcccEE
Confidence            456666665542222223455666666666666653 33333 34666667777777666 3444443 34445667777


Q ss_pred             eeccCcccccccc-ccCCCCCccEEEecc-cCCCcCCCCCCCCcceEEeecCchhhHHhhhhcccCCCCcCEEEEecCCC
Q 045021          271 GIYRCERLEALPK-GLHNLKSLKKLRIGG-KLPSLEEDGLPTNLHFLKIERNMEIWKSMIERGFHKFSSLRHLTIEGCDD  348 (461)
Q Consensus       271 ~l~~c~~~~~~~~-~~~~l~~L~~L~l~~-~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~  348 (461)
                      ++++|..++.++. .+..+++|++|++++ .+..++....+++|++|++++|. +.. .....+..+++|++|++++|  
T Consensus       177 ~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~-l~~-~~~~~~~~l~~L~~L~L~~n--  252 (452)
T 3zyi_A          177 DLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNH-FPE-IRPGSFHGLSSLKKLWVMNS--  252 (452)
T ss_dssp             ECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCCCCTTCTTCCEEECTTSC-CSE-ECGGGGTTCTTCCEEECTTS--
T ss_pred             eCCCCCCccccChhhccCCCCCCEEECCCCcccccccccccccccEEECcCCc-Ccc-cCcccccCccCCCEEEeCCC--
Confidence            7776666665544 466677777777777 66666655666677777777765 221 22224666777777777776  


Q ss_pred             cccccCccccccCCCCCCCCCcceeecCCCCCCcccc-cchhhccCCcEEEecC
Q 045021          349 DMVSFPPEDRRLGTTLPLPASLASLTIGDFPNLERLS-SSIVDLQNLKYLKLYD  401 (461)
Q Consensus       349 ~~~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~-~~~~~~~~L~~L~l~~  401 (461)
                      .+..++...+      ..+++|+.|+++++ .+..++ ..+..+++|+.|++.+
T Consensus       253 ~l~~~~~~~~------~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~  299 (452)
T 3zyi_A          253 QVSLIERNAF------DGLASLVELNLAHN-NLSSLPHDLFTPLRYLVELHLHH  299 (452)
T ss_dssp             CCCEECTTTT------TTCTTCCEEECCSS-CCSCCCTTSSTTCTTCCEEECCS
T ss_pred             cCceECHHHh------cCCCCCCEEECCCC-cCCccChHHhccccCCCEEEccC
Confidence            5555544323      24567777777773 566555 3455667777777766

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.78  E-value=2.8e-18  Score=163.58  Aligned_cols=247  Identities=19%  Similarity=0.196  Sum_probs=149.7

Q ss_pred             CccEEEEecCCCCeecccCCCCcchhhhcccCCCCCCccEEEEecCCchhhhHHhhcCCCccceeeccccccceeccc-c
Q 045021          158 LLEKLEIWDCPSLTCIFSKNELPATLESLEVGNQPPSLKSLNVWSCSKLESIAERLDNNTSLEMISILWCENLKFLPS-G  236 (461)
Q Consensus       158 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~  236 (461)
                      +|+.|++++ +.++. ++...+...          ++|++|++.++......+..+..+++|++|++++| .+..++. .
T Consensus        53 ~L~~L~l~~-n~i~~-~~~~~~~~l----------~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~  119 (353)
T 2z80_A           53 AVKSLDLSN-NRITY-ISNSDLQRC----------VNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYN-YLSNLSSSW  119 (353)
T ss_dssp             TCCEEECTT-SCCCE-ECTTTTTTC----------TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCSSCCHHH
T ss_pred             cCcEEECCC-CcCcc-cCHHHhccC----------CCCCEEECCCCccCccCHhhcCCCCCCCEEECCCC-cCCcCCHhH
Confidence            455555555 44544 333333222          45666666654222222335666677777777765 3444443 3


Q ss_pred             cCCCCCccEEEecCCCCCccCCC--CCCCCCCcceEeeccCcccccc-ccccCCCCCccEEEecc-cCCCcCC--CCCCC
Q 045021          237 LHNLRQLQEIQLWGCENLVSFPE--GGLPCAKLSKLGIYRCERLEAL-PKGLHNLKSLKKLRIGG-KLPSLEE--DGLPT  310 (461)
Q Consensus       237 ~~~l~~L~~L~l~~~~~l~~l~~--~~~~~~~L~~L~l~~c~~~~~~-~~~~~~l~~L~~L~l~~-~~~~l~~--~~~~~  310 (461)
                      +..+++|++|++++| .+..++.  ....+++|++|++++|..++.+ +..+..+++|++|++++ .+..+..  ...++
T Consensus       120 ~~~l~~L~~L~L~~n-~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~  198 (353)
T 2z80_A          120 FKPLSSLTFLNLLGN-PYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQ  198 (353)
T ss_dssp             HTTCTTCSEEECTTC-CCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCS
T ss_pred             hCCCccCCEEECCCC-CCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccc
Confidence            666777777777776 4445554  3445667777777776555554 34567777788888777 5544422  24557


Q ss_pred             CcceEEeecCchhhHHhhhhcccCCCCcCEEEEecCCCcccccCccccccCCCCCCCCCcceeecCCCCCCc-----ccc
Q 045021          311 NLHFLKIERNMEIWKSMIERGFHKFSSLRHLTIEGCDDDMVSFPPEDRRLGTTLPLPASLASLTIGDFPNLE-----RLS  385 (461)
Q Consensus       311 ~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~-----~i~  385 (461)
                      +|++|++++|.. . ..+...+..+++|++|++++|  .+..++...+.   .....+.++.++++++ .+.     .+|
T Consensus       199 ~L~~L~l~~n~l-~-~~~~~~~~~~~~L~~L~L~~n--~l~~~~~~~l~---~~~~~~~l~~l~L~~~-~l~~~~l~~l~  270 (353)
T 2z80_A          199 NVSHLILHMKQH-I-LLLEIFVDVTSSVECLELRDT--DLDTFHFSELS---TGETNSLIKKFTFRNV-KITDESLFQVM  270 (353)
T ss_dssp             EEEEEEEECSCS-T-THHHHHHHHTTTEEEEEEESC--BCTTCCCC---------CCCCCCEEEEESC-BCCHHHHHHHH
T ss_pred             cCCeecCCCCcc-c-cchhhhhhhcccccEEECCCC--ccccccccccc---cccccchhhccccccc-cccCcchhhhH
Confidence            788888888773 2 223333556788999999887  55554432111   0023456777777764 332     356


Q ss_pred             cchhhccCCcEEEecCCCCCcccCCCC--CcccccEeeccCCch
Q 045021          386 SSIVDLQNLKYLKLYDCPKLKYFSEKG--LPSSLLRLYIDECPL  427 (461)
Q Consensus       386 ~~~~~~~~L~~L~l~~C~~l~~~~~~~--~~~~L~~L~i~~c~~  427 (461)
                      ..+..+++|++|++++ ++++.+|...  ..++|++|++++|+.
T Consensus       271 ~~l~~l~~L~~L~Ls~-N~l~~i~~~~~~~l~~L~~L~L~~N~~  313 (353)
T 2z80_A          271 KLLNQISGLLELEFSR-NQLKSVPDGIFDRLTSLQKIWLHTNPW  313 (353)
T ss_dssp             HHHHTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred             HHHhcccCCCEEECCC-CCCCccCHHHHhcCCCCCEEEeeCCCc
Confidence            6778889999999998 6888887743  368899999988753

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.78  E-value=1.1e-18  Score=163.24  Aligned_cols=221  Identities=14%  Similarity=0.115  Sum_probs=127.8

Q ss_pred             CccEEEEec-CCchhhhHHhhcCCCccceeeccccccceecccccCCCCCccEEEecCCCCCccCCCCCCCCCCcceEee
Q 045021          194 SLKSLNVWS-CSKLESIAERLDNNTSLEMISILWCENLKFLPSGLHNLRQLQEIQLWGCENLVSFPEGGLPCAKLSKLGI  272 (461)
Q Consensus       194 ~L~~L~l~~-~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l  272 (461)
                      +|++|++.+ +.....+|..+..+++|++|++++|.....+|..+..+++|++|++++|.....++.....+++|++|++
T Consensus        77 ~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L  156 (313)
T 1ogq_A           77 YLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITF  156 (313)
T ss_dssp             TCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEEC
T ss_pred             CCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEEC
Confidence            344444442 2222233444555555555555554333344555555555555555555322234443444455555555


Q ss_pred             ccCccccccccccCCCC-CccEEEecc-cCC-CcCCC-CCCCCcceEEeecCchhhHHhhhhcccCCCCcCEEEEecCCC
Q 045021          273 YRCERLEALPKGLHNLK-SLKKLRIGG-KLP-SLEED-GLPTNLHFLKIERNMEIWKSMIERGFHKFSSLRHLTIEGCDD  348 (461)
Q Consensus       273 ~~c~~~~~~~~~~~~l~-~L~~L~l~~-~~~-~l~~~-~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~  348 (461)
                      ++|.....+|..+..++ +|++|++++ .+. .++.. ..+ +|++|++++|. +... ....+..+++|++|++++|  
T Consensus       157 ~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l-~L~~L~Ls~N~-l~~~-~~~~~~~l~~L~~L~L~~N--  231 (313)
T 1ogq_A          157 DGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNM-LEGD-ASVLFGSDKNTQKIHLAKN--  231 (313)
T ss_dssp             CSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGC-CCSEEECCSSE-EEEC-CGGGCCTTSCCSEEECCSS--
T ss_pred             cCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCC-cccEEECcCCc-ccCc-CCHHHhcCCCCCEEECCCC--
Confidence            55433334555555555 666666665 332 22211 222 27777777776 2211 2235677888888888887  


Q ss_pred             cccccCccccccCCCCCCCCCcceeecCCCCCCc-ccccchhhccCCcEEEecCCCCCc-ccCCCCCcccccEeeccCCc
Q 045021          349 DMVSFPPEDRRLGTTLPLPASLASLTIGDFPNLE-RLSSSIVDLQNLKYLKLYDCPKLK-YFSEKGLPSSLLRLYIDECP  426 (461)
Q Consensus       349 ~~~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~-~i~~~~~~~~~L~~L~l~~C~~l~-~~~~~~~~~~L~~L~i~~c~  426 (461)
                      .+...... +      ..+++|++|+++++ .+. .+|..+..+++|++|++++ ++++ .+|.....++|+.+++++++
T Consensus       232 ~l~~~~~~-~------~~l~~L~~L~Ls~N-~l~~~~p~~l~~l~~L~~L~Ls~-N~l~~~ip~~~~l~~L~~l~l~~N~  302 (313)
T 1ogq_A          232 SLAFDLGK-V------GLSKNLNGLDLRNN-RIYGTLPQGLTQLKFLHSLNVSF-NNLCGEIPQGGNLQRFDVSAYANNK  302 (313)
T ss_dssp             EECCBGGG-C------CCCTTCCEEECCSS-CCEECCCGGGGGCTTCCEEECCS-SEEEEECCCSTTGGGSCGGGTCSSS
T ss_pred             ceeeecCc-c------cccCCCCEEECcCC-cccCcCChHHhcCcCCCEEECcC-CcccccCCCCccccccChHHhcCCC
Confidence            55433332 3      35678999999985 554 6778888899999999998 5665 56665556888888898887


Q ss_pred             hh
Q 045021          427 LI  428 (461)
Q Consensus       427 ~l  428 (461)
                      .+
T Consensus       303 ~l  304 (313)
T 1ogq_A          303 CL  304 (313)
T ss_dssp             EE
T ss_pred             Cc
Confidence            44

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.78  E-value=1.6e-17  Score=168.58  Aligned_cols=253  Identities=29%  Similarity=0.374  Sum_probs=134.6

Q ss_pred             CCcCEEEecCCcCcccccCCCCCCCccEEEEeecCCccccCcccccCCCCcccEEEeeCCCCCccccccCCCCCccEEec
Q 045021           53 SSLREIEICRCHSLVSFPEVALPSKLKKIEIRECDALKSLPEAWMCGTNSSLEILKIWSCHSLPYIARVQLPPSLKRLDI  132 (461)
Q Consensus        53 ~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l  132 (461)
                      .+++.|+++++ .+..+|. ...++|++|++++|. ++.+|..     +++|+.|+++++ .++.++.  .+++|++|++
T Consensus        40 ~~l~~L~ls~n-~L~~lp~-~l~~~L~~L~L~~N~-l~~lp~~-----l~~L~~L~Ls~N-~l~~lp~--~l~~L~~L~L  108 (622)
T 3g06_A           40 NGNAVLNVGES-GLTTLPD-CLPAHITTLVIPDNN-LTSLPAL-----PPELRTLEVSGN-QLTSLPV--LPPGLLELSI  108 (622)
T ss_dssp             HCCCEEECCSS-CCSCCCS-CCCTTCSEEEECSCC-CSCCCCC-----CTTCCEEEECSC-CCSCCCC--CCTTCCEEEE
T ss_pred             CCCcEEEecCC-CcCccCh-hhCCCCcEEEecCCC-CCCCCCc-----CCCCCEEEcCCC-cCCcCCC--CCCCCCEEEC
Confidence            35889999886 5677775 123789999998875 7777762     378888888885 4666655  5677788887


Q ss_pred             ccCCCceEeccCCCcccccccccccCccEEEEecCCCCeecccCCCCcchhhhcccCCCCCCccEEEEecCCchhhhHHh
Q 045021          133 SHCDNIRTLTVEDGIQSSSRRYTSYLLEKLEIWDCPSLTCIFSKNELPATLESLEVGNQPPSLKSLNVWSCSKLESIAER  212 (461)
Q Consensus       133 ~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~  212 (461)
                      +++. +..+|  ..         .++|+.|++++ ++++. +|...              ++|++|++++| .+..++. 
T Consensus       109 s~N~-l~~l~--~~---------l~~L~~L~L~~-N~l~~-lp~~l--------------~~L~~L~Ls~N-~l~~l~~-  158 (622)
T 3g06_A          109 FSNP-LTHLP--AL---------PSGLCKLWIFG-NQLTS-LPVLP--------------PGLQELSVSDN-QLASLPA-  158 (622)
T ss_dssp             CSCC-CCCCC--CC---------CTTCCEEECCS-SCCSC-CCCCC--------------TTCCEEECCSS-CCSCCCC-
T ss_pred             cCCc-CCCCC--CC---------CCCcCEEECCC-CCCCc-CCCCC--------------CCCCEEECcCC-cCCCcCC-
Confidence            7754 44455  31         33577777776 55554 33210              34666666654 3333221 


Q ss_pred             hcCCCccceeeccccccceecccccCCCCCccEEEecCCCCCccCCCCCCCCCCcceEeeccCccccccccccCCCCCcc
Q 045021          213 LDNNTSLEMISILWCENLKFLPSGLHNLRQLQEIQLWGCENLVSFPEGGLPCAKLSKLGIYRCERLEALPKGLHNLKSLK  292 (461)
Q Consensus       213 ~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~l~~L~  292 (461)
                        .+.+|+.|++++| .+..+|   ..+++|+.|++++| .+..++..   .++|+.|++++| .++.+|.   .+++|+
T Consensus       159 --~~~~L~~L~L~~N-~l~~l~---~~~~~L~~L~Ls~N-~l~~l~~~---~~~L~~L~L~~N-~l~~l~~---~~~~L~  224 (622)
T 3g06_A          159 --LPSELCKLWAYNN-QLTSLP---MLPSGLQELSVSDN-QLASLPTL---PSELYKLWAYNN-RLTSLPA---LPSGLK  224 (622)
T ss_dssp             --CCTTCCEEECCSS-CCSCCC---CCCTTCCEEECCSS-CCSCCCCC---CTTCCEEECCSS-CCSSCCC---CCTTCC
T ss_pred             --ccCCCCEEECCCC-CCCCCc---ccCCCCcEEECCCC-CCCCCCCc---cchhhEEECcCC-cccccCC---CCCCCC
Confidence              2345555555544 333333   22345555555554 23333321   134555555443 2333332   124444


Q ss_pred             EEEecc-cCCCcCCCCCCCCcceEEeecCchhhHHhhhhcccCCCCcCEEEEecCCCcccccCccccccCCCCCCCCCcc
Q 045021          293 KLRIGG-KLPSLEEDGLPTNLHFLKIERNMEIWKSMIERGFHKFSSLRHLTIEGCDDDMVSFPPEDRRLGTTLPLPASLA  371 (461)
Q Consensus       293 ~L~l~~-~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~i~~~~~~~~~~~~~~~~L~  371 (461)
                      +|++++ .+..++                            ..+++|++|++++|  .+..++.          .+++|+
T Consensus       225 ~L~Ls~N~L~~lp----------------------------~~l~~L~~L~Ls~N--~L~~lp~----------~~~~L~  264 (622)
T 3g06_A          225 ELIVSGNRLTSLP----------------------------VLPSELKELMVSGN--RLTSLPM----------LPSGLL  264 (622)
T ss_dssp             EEECCSSCCSCCC----------------------------CCCTTCCEEECCSS--CCSCCCC----------CCTTCC
T ss_pred             EEEccCCccCcCC----------------------------CCCCcCcEEECCCC--CCCcCCc----------ccccCc
Confidence            444444 333333                            23345555555554  4444433          223555


Q ss_pred             eeecCCCCCCcccccchhhccCCcEEEecC
Q 045021          372 SLTIGDFPNLERLSSSIVDLQNLKYLKLYD  401 (461)
Q Consensus       372 ~L~l~~~~~l~~i~~~~~~~~~L~~L~l~~  401 (461)
                      .|++++| .+..+|..+..+++|+.|++++
T Consensus       265 ~L~Ls~N-~L~~lp~~l~~l~~L~~L~L~~  293 (622)
T 3g06_A          265 SLSVYRN-QLTRLPESLIHLSSETTVNLEG  293 (622)
T ss_dssp             EEECCSS-CCCSCCGGGGGSCTTCEEECCS
T ss_pred             EEeCCCC-CCCcCCHHHhhccccCEEEecC
Confidence            5555552 4445554555555555555555

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.77  E-value=2.3e-19  Score=168.42  Aligned_cols=244  Identities=13%  Similarity=0.090  Sum_probs=158.7

Q ss_pred             hhhhhhhcCCccEEEecCCcCCccc-cccCCCCCCcCEEEecCCcCcccccCCCCCCCccEEEEeecCCccccCcccccC
Q 045021           21 QQQLCELSCRLEYLILRYCKGLVKL-PQSSLSLSSLREIEICRCHSLVSFPEVALPSKLKKIEIRECDALKSLPEAWMCG   99 (461)
Q Consensus        21 l~~l~~~~~~L~~L~l~~~~~l~~l-~~~~~~l~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~   99 (461)
                      +..+...+++|++|+++++ .+..+ |..+..+++|++|++++| .+...+++..+++|++|+++++. ++.++..    
T Consensus        26 ~~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~l~~L~~L~Ls~n~-l~~l~~~----   98 (317)
T 3o53_A           26 LASLRQSAWNVKELDLSGN-PLSQISAADLAPFTKLELLNLSSN-VLYETLDLESLSTLRTLDLNNNY-VQELLVG----   98 (317)
T ss_dssp             HHHHHTTGGGCSEEECTTS-CCCCCCHHHHTTCTTCCEEECTTS-CCEEEEEETTCTTCCEEECCSSE-EEEEEEC----
T ss_pred             HHHHhccCCCCCEEECcCC-ccCcCCHHHhhCCCcCCEEECCCC-cCCcchhhhhcCCCCEEECcCCc-cccccCC----
Confidence            3334334489999999995 45655 457899999999999997 45556568889999999999976 7766643    


Q ss_pred             CCCcccEEEeeCCCCCccccccCCCCCccEEecccCCCceEeccCCCcccccccccccCccEEEEecCCCCeecccCCCC
Q 045021          100 TNSSLEILKIWSCHSLPYIARVQLPPSLKRLDISHCDNIRTLTVEDGIQSSSRRYTSYLLEKLEIWDCPSLTCIFSKNEL  179 (461)
Q Consensus       100 ~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~  179 (461)
                        ++|+.|+++++ .++.++. ..+++|++|+++++. +..++. ..+..      +++|+.|++++ +.++. .+...+
T Consensus        99 --~~L~~L~l~~n-~l~~~~~-~~~~~L~~L~l~~N~-l~~~~~-~~~~~------l~~L~~L~Ls~-N~l~~-~~~~~~  164 (317)
T 3o53_A           99 --PSIETLHAANN-NISRVSC-SRGQGKKNIYLANNK-ITMLRD-LDEGC------RSRVQYLDLKL-NEIDT-VNFAEL  164 (317)
T ss_dssp             --TTCCEEECCSS-CCSEEEE-CCCSSCEEEECCSSC-CCSGGG-BCTGG------GSSEEEEECTT-SCCCE-EEGGGG
T ss_pred             --CCcCEEECCCC-ccCCcCc-cccCCCCEEECCCCC-CCCccc-hhhhc------cCCCCEEECCC-CCCCc-ccHHHH
Confidence              78999999884 5555543 336778888888865 333320 23332      45788888887 66665 322222


Q ss_pred             cchhhhcccCCCCCCccEEEEecCCchhhhHHhhcCCCccceeeccccccceecccccCCCCCccEEEecCCCCCccCCC
Q 045021          180 PATLESLEVGNQPPSLKSLNVWSCSKLESIAERLDNNTSLEMISILWCENLKFLPSGLHNLRQLQEIQLWGCENLVSFPE  259 (461)
Q Consensus       180 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~  259 (461)
                      ...         +++|+.|+++++ .+..++ ....+++|++|++++| .+..++..+..+++|+.|++++| .+..++.
T Consensus       165 ~~~---------l~~L~~L~L~~N-~l~~~~-~~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~L~~N-~l~~l~~  231 (317)
T 3o53_A          165 AAS---------SDTLEHLNLQYN-FIYDVK-GQVVFAKLKTLDLSSN-KLAFMGPEFQSAAGVTWISLRNN-KLVLIEK  231 (317)
T ss_dssp             GGG---------TTTCCEEECTTS-CCCEEE-CCCCCTTCCEEECCSS-CCCEECGGGGGGTTCSEEECTTS-CCCEECT
T ss_pred             hhc---------cCcCCEEECCCC-cCcccc-cccccccCCEEECCCC-cCCcchhhhcccCcccEEECcCC-cccchhh
Confidence            111         146777777774 333333 2234677777777775 45555555667777777777776 4556666


Q ss_pred             CCCCCCCcceEeeccCccc-cccccccCCCCCccEEEecc
Q 045021          260 GGLPCAKLSKLGIYRCERL-EALPKGLHNLKSLKKLRIGG  298 (461)
Q Consensus       260 ~~~~~~~L~~L~l~~c~~~-~~~~~~~~~l~~L~~L~l~~  298 (461)
                      ....+++|+.|++++|... ..++..+..+++|+.+++.+
T Consensus       232 ~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~  271 (317)
T 3o53_A          232 ALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQT  271 (317)
T ss_dssp             TCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCC
Confidence            5555667777777775544 34455666666666666654

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.77  E-value=7.4e-18  Score=160.70  Aligned_cols=241  Identities=14%  Similarity=0.160  Sum_probs=113.6

Q ss_pred             CcCEEEecCCcCcccccC--CCCCCCccEEEEeecCCccccCcc-cccCCCCcccEEEeeCCCCCcccccc--CCCCCcc
Q 045021           54 SLREIEICRCHSLVSFPE--VALPSKLKKIEIRECDALKSLPEA-WMCGTNSSLEILKIWSCHSLPYIARV--QLPPSLK  128 (461)
Q Consensus        54 ~L~~L~l~~~~~l~~~~~--~~~l~~L~~L~l~~~~~l~~~~~~-~~~~~~~~L~~L~l~~~~~l~~~~~~--~~~~~L~  128 (461)
                      +|++|++++| .+..++.  +..+++|++|+++++. +..++.. +...  ++|++|+++++ .++.++..  ..+++|+
T Consensus        53 ~L~~L~l~~n-~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l--~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~  127 (353)
T 2z80_A           53 AVKSLDLSNN-RITYISNSDLQRCVNLQALVLTSNG-INTIEEDSFSSL--GSLEHLDLSYN-YLSNLSSSWFKPLSSLT  127 (353)
T ss_dssp             TCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTSC-CCEECTTTTTTC--TTCCEEECCSS-CCSSCCHHHHTTCTTCS
T ss_pred             cCcEEECCCC-cCcccCHHHhccCCCCCEEECCCCc-cCccCHhhcCCC--CCCCEEECCCC-cCCcCCHhHhCCCccCC
Confidence            4555555554 2333433  4445555555555543 3333322 2222  45555555442 33333331  3445555


Q ss_pred             EEecccCCCceEeccCC--CcccccccccccCccEEEEecCCCCeecccCCCCcchhhhcccCCCCCCccEEEEecCCch
Q 045021          129 RLDISHCDNIRTLTVED--GIQSSSRRYTSYLLEKLEIWDCPSLTCIFSKNELPATLESLEVGNQPPSLKSLNVWSCSKL  206 (461)
Q Consensus       129 ~L~l~~~~~~~~l~~~~--~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l  206 (461)
                      +|+++++. +..++  .  .+..      +++|+.|+++++..+.. ++...+...          ++|++|++.++...
T Consensus       128 ~L~L~~n~-l~~l~--~~~~~~~------l~~L~~L~l~~n~~~~~-~~~~~~~~l----------~~L~~L~l~~n~l~  187 (353)
T 2z80_A          128 FLNLLGNP-YKTLG--ETSLFSH------LTKLQILRVGNMDTFTK-IQRKDFAGL----------TFLEELEIDASDLQ  187 (353)
T ss_dssp             EEECTTCC-CSSSC--SSCSCTT------CTTCCEEEEEESSSCCE-ECTTTTTTC----------CEEEEEEEEETTCC
T ss_pred             EEECCCCC-CcccC--chhhhcc------CCCCcEEECCCCccccc-cCHHHccCC----------CCCCEEECCCCCcC
Confidence            55555432 22333  2  1222      33455555555333443 222222211          34555555554332


Q ss_pred             hhhHHhhcCCCccceeeccccccceecccc-cCCCCCccEEEecCCCCCccCCC----CCCCCCCcceEeeccCc----c
Q 045021          207 ESIAERLDNNTSLEMISILWCENLKFLPSG-LHNLRQLQEIQLWGCENLVSFPE----GGLPCAKLSKLGIYRCE----R  277 (461)
Q Consensus       207 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~l~~l~~----~~~~~~~L~~L~l~~c~----~  277 (461)
                      ...+..+..+++|++|++++|. +..++.. +..+++|+.|++++| .+..++.    .....+.++.+++.++.    .
T Consensus       188 ~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~  265 (353)
T 2z80_A          188 SYEPKSLKSIQNVSHLILHMKQ-HILLLEIFVDVTSSVECLELRDT-DLDTFHFSELSTGETNSLIKKFTFRNVKITDES  265 (353)
T ss_dssp             EECTTTTTTCSEEEEEEEECSC-STTHHHHHHHHTTTEEEEEEESC-BCTTCCCC------CCCCCCEEEEESCBCCHHH
T ss_pred             ccCHHHHhccccCCeecCCCCc-cccchhhhhhhcccccEEECCCC-ccccccccccccccccchhhccccccccccCcc
Confidence            2234455555666666665543 2333322 223566666666665 2222221    01123355666665543    1


Q ss_pred             ccccccccCCCCCccEEEecc-cCCCcCCC--CCCCCcceEEeecCc
Q 045021          278 LEALPKGLHNLKSLKKLRIGG-KLPSLEED--GLPTNLHFLKIERNM  321 (461)
Q Consensus       278 ~~~~~~~~~~l~~L~~L~l~~-~~~~l~~~--~~~~~L~~L~l~~~~  321 (461)
                      +..+|..+..+++|++|++++ .+..++..  ..+++|++|++++|+
T Consensus       266 l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~  312 (353)
T 2z80_A          266 LFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNP  312 (353)
T ss_dssp             HHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             hhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCC
Confidence            234566677788888888877 66666653  345667777777665

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.76  E-value=1.3e-17  Score=155.74  Aligned_cols=103  Identities=23%  Similarity=0.242  Sum_probs=54.5

Q ss_pred             CCccEEEEecCCchhhh---HHhhcCCCccceeeccccccceecccccCCCCCccEEEecCCCCCccCCC--CCCCCCCc
Q 045021          193 PSLKSLNVWSCSKLESI---AERLDNNTSLEMISILWCENLKFLPSGLHNLRQLQEIQLWGCENLVSFPE--GGLPCAKL  267 (461)
Q Consensus       193 ~~L~~L~l~~~~~l~~~---~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~--~~~~~~~L  267 (461)
                      ++|+.|++.++. +...   +..+..+++|++|++++| .+..++..+..+++|++|++++| .+..++.  ....+++|
T Consensus        52 ~~L~~L~L~~n~-l~~~~~~~~~~~~~~~L~~L~Ls~n-~i~~l~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L  128 (306)
T 2z66_A           52 TQLTKLSLSSNG-LSFKGCCSQSDFGTTSLKYLDLSFN-GVITMSSNFLGLEQLEHLDFQHS-NLKQMSEFSVFLSLRNL  128 (306)
T ss_dssp             TTCSEEECCSSC-CCEEEEEEHHHHSCSCCCEEECCSC-SEEEEEEEEETCTTCCEEECTTS-EEESSTTTTTTTTCTTC
T ss_pred             ccCCEEECCCCc-cCcccCcccccccccccCEEECCCC-ccccChhhcCCCCCCCEEECCCC-cccccccchhhhhccCC
Confidence            456666665532 2211   234445667777777665 34455555666677777777665 3333332  33445566


Q ss_pred             ceEeeccCccccccccccCCCCCccEEEecc
Q 045021          268 SKLGIYRCERLEALPKGLHNLKSLKKLRIGG  298 (461)
Q Consensus       268 ~~L~l~~c~~~~~~~~~~~~l~~L~~L~l~~  298 (461)
                      ++|++++|......+..+..+++|++|++++
T Consensus       129 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~  159 (306)
T 2z66_A          129 IYLDISHTHTRVAFNGIFNGLSSLEVLKMAG  159 (306)
T ss_dssp             CEEECTTSCCEECSTTTTTTCTTCCEEECTT
T ss_pred             CEEECCCCcCCccchhhcccCcCCCEEECCC
Confidence            6666666543333344455555555555544

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.76  E-value=7.4e-17  Score=158.49  Aligned_cols=236  Identities=19%  Similarity=0.272  Sum_probs=107.4

Q ss_pred             cEEEecCCcCCccccccCCCCCCcCEEEecCCcCcccccC--CCCCCCccEEEEeecCCccccCcccccCCCCcccEEEe
Q 045021           32 EYLILRYCKGLVKLPQSSLSLSSLREIEICRCHSLVSFPE--VALPSKLKKIEIRECDALKSLPEAWMCGTNSSLEILKI  109 (461)
Q Consensus        32 ~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~--~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l  109 (461)
                      +.++..+ .++..+|..+.  ++++.|++++| .+..++.  +..+++|++|+++++. +..++...+.. +++|+.|++
T Consensus        46 ~~v~c~~-~~l~~iP~~~~--~~l~~L~L~~n-~i~~~~~~~~~~l~~L~~L~Ls~n~-i~~i~~~~~~~-l~~L~~L~L  119 (440)
T 3zyj_A           46 SKVICVR-KNLREVPDGIS--TNTRLLNLHEN-QIQIIKVNSFKHLRHLEILQLSRNH-IRTIEIGAFNG-LANLNTLEL  119 (440)
T ss_dssp             CEEECCS-CCCSSCCSCCC--TTCSEEECCSC-CCCEECTTTTSSCSSCCEEECCSSC-CCEECGGGGTT-CSSCCEEEC
T ss_pred             CEEEeCC-CCcCcCCCCCC--CCCcEEEccCC-cCCeeCHHHhhCCCCCCEEECCCCc-CCccChhhccC-CccCCEEEC
Confidence            3444444 34455555443  46666666664 3444433  5556666666666644 45444332221 256666666


Q ss_pred             eCCCCCcccccc--CCCCCccEEecccCCCceEeccCC-CcccccccccccCccEEEEecCCCCeecccCCCCcchhhhc
Q 045021          110 WSCHSLPYIARV--QLPPSLKRLDISHCDNIRTLTVED-GIQSSSRRYTSYLLEKLEIWDCPSLTCIFSKNELPATLESL  186 (461)
Q Consensus       110 ~~~~~l~~~~~~--~~~~~L~~L~l~~~~~~~~l~~~~-~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~  186 (461)
                      +++ .++.++..  ..+++|++|+++++. +..++  . .+..      +++|+.|++++++.+.. ++..         
T Consensus       120 ~~n-~l~~~~~~~~~~l~~L~~L~L~~N~-i~~~~--~~~~~~------l~~L~~L~l~~~~~l~~-i~~~---------  179 (440)
T 3zyj_A          120 FDN-RLTTIPNGAFVYLSKLKELWLRNNP-IESIP--SYAFNR------IPSLRRLDLGELKRLSY-ISEG---------  179 (440)
T ss_dssp             CSS-CCSSCCTTTSCSCSSCCEEECCSCC-CCEEC--TTTTTT------CTTCCEEECCCCTTCCE-ECTT---------
T ss_pred             CCC-cCCeeCHhHhhccccCceeeCCCCc-ccccC--HHHhhh------CcccCEeCCCCCCCcce-eCcc---------
Confidence            553 44444332  444555555555543 33333  2 1211      33455555544444433 2222         


Q ss_pred             ccCCCCCCccEEEEecCCchhhhHHhhcCCCccceeeccccccceecccccCCCCCccEEEecCCCCCccC-CCCCCCCC
Q 045021          187 EVGNQPPSLKSLNVWSCSKLESIAERLDNNTSLEMISILWCENLKFLPSGLHNLRQLQEIQLWGCENLVSF-PEGGLPCA  265 (461)
Q Consensus       187 ~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l-~~~~~~~~  265 (461)
                                               .+..+++|++|++++| .+..+|. +..+++|+.|++++| .+..+ +.....++
T Consensus       180 -------------------------~~~~l~~L~~L~L~~n-~l~~~~~-~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~  231 (440)
T 3zyj_A          180 -------------------------AFEGLSNLRYLNLAMC-NLREIPN-LTPLIKLDELDLSGN-HLSAIRPGSFQGLM  231 (440)
T ss_dssp             -------------------------TTTTCSSCCEEECTTS-CCSSCCC-CTTCSSCCEEECTTS-CCCEECTTTTTTCT
T ss_pred             -------------------------hhhcccccCeecCCCC-cCccccc-cCCCcccCEEECCCC-ccCccChhhhccCc
Confidence                                     3334444444444443 2333332 344445555555544 22222 22333344


Q ss_pred             CcceEeeccCccccccccccCCCCCccEEEecc-cCCCcCCC--CCCCCcceEEeecCc
Q 045021          266 KLSKLGIYRCERLEALPKGLHNLKSLKKLRIGG-KLPSLEED--GLPTNLHFLKIERNM  321 (461)
Q Consensus       266 ~L~~L~l~~c~~~~~~~~~~~~l~~L~~L~l~~-~~~~l~~~--~~~~~L~~L~l~~~~  321 (461)
                      +|++|++++|......+..+..+++|++|++++ .+..++..  ..+++|+.|++++|+
T Consensus       232 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np  290 (440)
T 3zyj_A          232 HLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNP  290 (440)
T ss_dssp             TCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSC
T ss_pred             cCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCC
Confidence            555555554332222233445555555555555 44444432  233555566655554

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.76  E-value=1.8e-17  Score=154.65  Aligned_cols=128  Identities=20%  Similarity=0.252  Sum_probs=75.7

Q ss_pred             CCccEEEEecCCchhhhHHhhcCCCccceeeccccccce-ecccccCCCCCccEEEecCCCCCccC-CCCCCCCCCcceE
Q 045021          193 PSLKSLNVWSCSKLESIAERLDNNTSLEMISILWCENLK-FLPSGLHNLRQLQEIQLWGCENLVSF-PEGGLPCAKLSKL  270 (461)
Q Consensus       193 ~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~l~~l-~~~~~~~~~L~~L  270 (461)
                      ++|+.|++.++......+..+..+++|++|++++|.... .+|..+..+++|++|++++|. +..+ +.....+++|++|
T Consensus       126 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L  204 (306)
T 2z66_A          126 RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ-LEQLSPTAFNSLSSLQVL  204 (306)
T ss_dssp             TTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEE
T ss_pred             cCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCC-cCCcCHHHhcCCCCCCEE
Confidence            345555555543333333445566677777777654332 356667777777777777763 3333 3344556677777


Q ss_pred             eeccCccccccccccCCCCCccEEEecc-cCCCcCCC--C-CCCCcceEEeecCc
Q 045021          271 GIYRCERLEALPKGLHNLKSLKKLRIGG-KLPSLEED--G-LPTNLHFLKIERNM  321 (461)
Q Consensus       271 ~l~~c~~~~~~~~~~~~l~~L~~L~l~~-~~~~l~~~--~-~~~~L~~L~l~~~~  321 (461)
                      ++++|......+..+..+++|++|++++ .+......  . .+++|++|++++|+
T Consensus       205 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~  259 (306)
T 2z66_A          205 NMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND  259 (306)
T ss_dssp             ECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCC
T ss_pred             ECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCC
Confidence            7777543222233567778888888887 55443322  2 23588888888876

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.75  E-value=4.6e-17  Score=160.51  Aligned_cols=238  Identities=18%  Similarity=0.212  Sum_probs=180.8

Q ss_pred             ccEEEEecCCCCeecccCCCCcchhhhcccCCCCCCccEEEEecCCchhhhHHhhcCCCccceeeccccccceecccccC
Q 045021          159 LEKLEIWDCPSLTCIFSKNELPATLESLEVGNQPPSLKSLNVWSCSKLESIAERLDNNTSLEMISILWCENLKFLPSGLH  238 (461)
Q Consensus       159 L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~  238 (461)
                      ...++..+ ..++. +|.+. +            ++++.|++.++......+..+..+++|++|++++|......+..+.
T Consensus        56 ~~~v~c~~-~~l~~-iP~~~-~------------~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~  120 (452)
T 3zyi_A           56 FSKVVCTR-RGLSE-VPQGI-P------------SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFN  120 (452)
T ss_dssp             SCEEECCS-SCCSS-CCSCC-C------------TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTT
T ss_pred             CcEEEECC-CCcCc-cCCCC-C------------CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhcc
Confidence            45666666 56666 55432 2            4699999999644444466889999999999999844444457889


Q ss_pred             CCCCccEEEecCCCCCccCCC-CCCCCCCcceEeeccCcccccccc-ccCCCCCccEEEecc--cCCCcCCC--CCCCCc
Q 045021          239 NLRQLQEIQLWGCENLVSFPE-GGLPCAKLSKLGIYRCERLEALPK-GLHNLKSLKKLRIGG--KLPSLEED--GLPTNL  312 (461)
Q Consensus       239 ~l~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~c~~~~~~~~-~~~~l~~L~~L~l~~--~~~~l~~~--~~~~~L  312 (461)
                      ++++|++|++++| .+..++. ....+++|++|++++|. ++.++. .+..+++|++|++++  .+..++..  ..+++|
T Consensus       121 ~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L  198 (452)
T 3zyi_A          121 GLASLNTLELFDN-WLTVIPSGAFEYLSKLRELWLRNNP-IESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNL  198 (452)
T ss_dssp             TCTTCCEEECCSS-CCSBCCTTTSSSCTTCCEEECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTC
T ss_pred             CcccCCEEECCCC-cCCccChhhhcccCCCCEEECCCCC-cceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCC
Confidence            9999999999998 5666665 35567899999999965 455544 788999999999998  56666543  456899


Q ss_pred             ceEEeecCchhhHHhhhhcccCCCCcCEEEEecCCCcccccCccccccCCCCCCCCCcceeecCCCCCCcccc-cchhhc
Q 045021          313 HFLKIERNMEIWKSMIERGFHKFSSLRHLTIEGCDDDMVSFPPEDRRLGTTLPLPASLASLTIGDFPNLERLS-SSIVDL  391 (461)
Q Consensus       313 ~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~-~~~~~~  391 (461)
                      ++|++++|. +... +  .+..+++|++|++++|  .+..++...+      ..+++|++|+++++ .+..++ ..+..+
T Consensus       199 ~~L~L~~n~-l~~~-~--~~~~l~~L~~L~Ls~N--~l~~~~~~~~------~~l~~L~~L~L~~n-~l~~~~~~~~~~l  265 (452)
T 3zyi_A          199 KYLNLGMCN-IKDM-P--NLTPLVGLEELEMSGN--HFPEIRPGSF------HGLSSLKKLWVMNS-QVSLIERNAFDGL  265 (452)
T ss_dssp             CEEECTTSC-CSSC-C--CCTTCTTCCEEECTTS--CCSEECGGGG------TTCTTCCEEECTTS-CCCEECTTTTTTC
T ss_pred             CEEECCCCc-cccc-c--cccccccccEEECcCC--cCcccCcccc------cCccCCCEEEeCCC-cCceECHHHhcCC
Confidence            999999997 3322 2  4778899999999998  7777755435      36789999999994 666654 667889


Q ss_pred             cCCcEEEecCCCCCcccCCCCC--cccccEeeccCCch
Q 045021          392 QNLKYLKLYDCPKLKYFSEKGL--PSSLLRLYIDECPL  427 (461)
Q Consensus       392 ~~L~~L~l~~C~~l~~~~~~~~--~~~L~~L~i~~c~~  427 (461)
                      ++|+.|++++ ++++.++...+  .++|++|+++++|.
T Consensus       266 ~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~Np~  302 (452)
T 3zyi_A          266 ASLVELNLAH-NNLSSLPHDLFTPLRYLVELHLHHNPW  302 (452)
T ss_dssp             TTCCEEECCS-SCCSCCCTTSSTTCTTCCEEECCSSCE
T ss_pred             CCCCEEECCC-CcCCccChHHhccccCCCEEEccCCCc
Confidence            9999999999 78888887543  68999999998863

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.75  E-value=2.2e-20  Score=184.98  Aligned_cols=343  Identities=19%  Similarity=0.170  Sum_probs=218.7

Q ss_pred             CCCcCEEEecCCcCcccccC---CCCCCCccEEEEeecCCcc-----ccCcccccCCCCcccEEEeeCCCCCccccc--c
Q 045021           52 LSSLREIEICRCHSLVSFPE---VALPSKLKKIEIRECDALK-----SLPEAWMCGTNSSLEILKIWSCHSLPYIAR--V  121 (461)
Q Consensus        52 l~~L~~L~l~~~~~l~~~~~---~~~l~~L~~L~l~~~~~l~-----~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~--~  121 (461)
                      .++|++|+++++. +...+.   +..+++|++|++++|. +.     .++..+...  ++|++|+++++ .+++...  .
T Consensus         2 ~~~l~~L~Ls~~~-l~~~~~~~~~~~~~~L~~L~L~~~~-l~~~~~~~l~~~l~~~--~~L~~L~Ls~n-~l~~~~~~~l   76 (461)
T 1z7x_W            2 SLDIQSLDIQCEE-LSDARWAELLPLLQQCQVVRLDDCG-LTEARCKDISSALRVN--PALAELNLRSN-ELGDVGVHCV   76 (461)
T ss_dssp             CEEEEEEEEESCC-CCHHHHHHHHHHHTTCSEEEEESSC-CCHHHHHHHHHHHHTC--TTCCEEECTTC-CCHHHHHHHH
T ss_pred             Cccceehhhhhcc-cCchhHHHHHhhcCCccEEEccCCC-CCHHHHHHHHHHHHhC--CCcCEEeCCCC-cCChHHHHHH
Confidence            3579999999874 443322   5678999999999987 55     344444444  89999999985 4544211  1


Q ss_pred             -CCCC----CccEEecccCCCce----EeccCCCcccccccccccCccEEEEecCCCCeecccCCCCcchhhhcccCCCC
Q 045021          122 -QLPP----SLKRLDISHCDNIR----TLTVEDGIQSSSRRYTSYLLEKLEIWDCPSLTCIFSKNELPATLESLEVGNQP  192 (461)
Q Consensus       122 -~~~~----~L~~L~l~~~~~~~----~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~  192 (461)
                       ..++    +|++|++++|..-.    .++  ..+..      +++|+.|++++ +.+.+ .....+...     +....
T Consensus        77 ~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~--~~l~~------~~~L~~L~Ls~-n~i~~-~~~~~l~~~-----l~~~~  141 (461)
T 1z7x_W           77 LQGLQTPSCKIQKLSLQNCCLTGAGCGVLS--STLRT------LPTLQELHLSD-NLLGD-AGLQLLCEG-----LLDPQ  141 (461)
T ss_dssp             HHTTCSTTCCCCEEECTTSCCBGGGHHHHH--HHTTS------CTTCCEEECCS-SBCHH-HHHHHHHHH-----HTSTT
T ss_pred             HHHHhhCCCceeEEEccCCCCCHHHHHHHH--HHHcc------CCceeEEECCC-CcCch-HHHHHHHHH-----HhcCC
Confidence             2233    79999999986221    233  33333      56899999998 55653 111111110     01112


Q ss_pred             CCccEEEEecCCchh----hhHHhhcCCCccceeeccccccceecccccC-----CCCCccEEEecCCCCCcc-----CC
Q 045021          193 PSLKSLNVWSCSKLE----SIAERLDNNTSLEMISILWCENLKFLPSGLH-----NLRQLQEIQLWGCENLVS-----FP  258 (461)
Q Consensus       193 ~~L~~L~l~~~~~l~----~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-----~l~~L~~L~l~~~~~l~~-----l~  258 (461)
                      ++|++|++.+|..-.    .++..+..+++|++|++++|..-...+..+.     ..++|++|++++|. +..     ++
T Consensus       142 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~l~  220 (461)
T 1z7x_W          142 CRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCG-VTSDNCRDLC  220 (461)
T ss_dssp             CCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSC-CBTTHHHHHH
T ss_pred             CcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCC-CcHHHHHHHH
Confidence            479999999874333    2455677789999999998753222122221     35699999999983 333     23


Q ss_pred             CCCCCCCCcceEeeccCccccc-----c-ccccCCCCCccEEEecc-cCCC-----cCCC-CCCCCcceEEeecCchhhH
Q 045021          259 EGGLPCAKLSKLGIYRCERLEA-----L-PKGLHNLKSLKKLRIGG-KLPS-----LEED-GLPTNLHFLKIERNMEIWK  325 (461)
Q Consensus       259 ~~~~~~~~L~~L~l~~c~~~~~-----~-~~~~~~l~~L~~L~l~~-~~~~-----l~~~-~~~~~L~~L~l~~~~~l~~  325 (461)
                      .....+++|++|++++|. ++.     + +..+..+++|++|++++ .+..     ++.. ..+++|++|++++|. +.+
T Consensus       221 ~~l~~~~~L~~L~Ls~n~-l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~  298 (461)
T 1z7x_W          221 GIVASKASLRELALGSNK-LGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNE-LGD  298 (461)
T ss_dssp             HHHHHCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCC-CHH
T ss_pred             HHHHhCCCccEEeccCCc-CChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCC-Cch
Confidence            333346799999999974 332     2 22334689999999998 5544     3322 336799999999997 433


Q ss_pred             Hhhh----hcccCCCCcCEEEEecCCCccccc-----CccccccCCCCCCCCCcceeecCCCCCCcccc-cchhh-----
Q 045021          326 SMIE----RGFHKFSSLRHLTIEGCDDDMVSF-----PPEDRRLGTTLPLPASLASLTIGDFPNLERLS-SSIVD-----  390 (461)
Q Consensus       326 ~~~~----~~~~~l~~L~~L~l~~~~~~~~~i-----~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~-~~~~~-----  390 (461)
                      ....    ......++|++|++++|  .+...     +.. +      ...++|++|+++++ .+.... ..+..     
T Consensus       299 ~~~~~l~~~l~~~~~~L~~L~L~~n--~l~~~~~~~l~~~-l------~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~  368 (461)
T 1z7x_W          299 EGARLLCETLLEPGCQLESLWVKSC--SFTAACCSHFSSV-L------AQNRFLLELQISNN-RLEDAGVRELCQGLGQP  368 (461)
T ss_dssp             HHHHHHHHHHTSTTCCCCEEECTTS--CCBGGGHHHHHHH-H------HHCSSCCEEECCSS-BCHHHHHHHHHHHHTST
T ss_pred             HHHHHHHHHhccCCccceeeEcCCC--CCchHHHHHHHHH-H------hhCCCccEEEccCC-ccccccHHHHHHHHcCC
Confidence            2211    11233479999999998  44432     221 2      14579999999996 565432 22222     


Q ss_pred             ccCCcEEEecCCCCCcc-----cCCC-CCcccccEeeccCCchh
Q 045021          391 LQNLKYLKLYDCPKLKY-----FSEK-GLPSSLLRLYIDECPLI  428 (461)
Q Consensus       391 ~~~L~~L~l~~C~~l~~-----~~~~-~~~~~L~~L~i~~c~~l  428 (461)
                      .++|++|++++| .++.     ++.. ...++|++|++++|+.-
T Consensus       369 ~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~  411 (461)
T 1z7x_W          369 GSVLRVLWLADC-DVSDSSCSSLAATLLANHSLRELDLSNNCLG  411 (461)
T ss_dssp             TCCCCEEECTTS-CCCHHHHHHHHHHHHHCCCCCEEECCSSSCC
T ss_pred             CCceEEEECCCC-CCChhhHHHHHHHHHhCCCccEEECCCCCCC
Confidence            679999999994 6763     3321 11589999999999643

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.74  E-value=4.8e-18  Score=168.69  Aligned_cols=245  Identities=12%  Similarity=0.077  Sum_probs=162.2

Q ss_pred             hhhhhhhhhcCCccEEEecCCcCCccc-cccCCCCCCcCEEEecCCcCcccccCCCCCCCccEEEEeecCCccccCcccc
Q 045021           19 DQQQQLCELSCRLEYLILRYCKGLVKL-PQSSLSLSSLREIEICRCHSLVSFPEVALPSKLKKIEIRECDALKSLPEAWM   97 (461)
Q Consensus        19 ~~l~~l~~~~~~L~~L~l~~~~~l~~l-~~~~~~l~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~   97 (461)
                      ..+..+...+++|++|+++++. +..+ |..+..+++|++|++++| .+...++++.+++|++|++++|. +..++..  
T Consensus        24 ~~l~~l~~~~~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~l~~l~~L~~L~Ls~N~-l~~l~~~--   98 (487)
T 3oja_A           24 QALASLRQSAWNVKELDLSGNP-LSQISAADLAPFTKLELLNLSSN-VLYETLDLESLSTLRTLDLNNNY-VQELLVG--   98 (487)
T ss_dssp             HHHHTTSTTGGGCCEEECCSSC-CCCCCGGGGTTCTTCCEEECTTS-CCEEEEECTTCTTCCEEECCSSE-EEEEEEC--
T ss_pred             HHHHHhcccCCCccEEEeeCCc-CCCCCHHHHhCCCCCCEEEeeCC-CCCCCcccccCCCCCEEEecCCc-CCCCCCC--
Confidence            3444443444799999999954 5655 568999999999999997 45555568899999999999976 7776644  


Q ss_pred             cCCCCcccEEEeeCCCCCccccccCCCCCccEEecccCCCceEeccCCCcccccccccccCccEEEEecCCCCeecccCC
Q 045021           98 CGTNSSLEILKIWSCHSLPYIARVQLPPSLKRLDISHCDNIRTLTVEDGIQSSSRRYTSYLLEKLEIWDCPSLTCIFSKN  177 (461)
Q Consensus        98 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~  177 (461)
                          ++|+.|+++++ .++.++. ..+++|+.|+++++......|  ..+..      +++|+.|++++ +.++. .+..
T Consensus        99 ----~~L~~L~L~~N-~l~~~~~-~~l~~L~~L~L~~N~l~~~~~--~~~~~------l~~L~~L~Ls~-N~l~~-~~~~  162 (487)
T 3oja_A           99 ----PSIETLHAANN-NISRVSC-SRGQGKKNIYLANNKITMLRD--LDEGC------RSRVQYLDLKL-NEIDT-VNFA  162 (487)
T ss_dssp             ----TTCCEEECCSS-CCCCEEE-CCCSSCEEEECCSSCCCSGGG--BCGGG------GSSEEEEECTT-SCCCE-EEGG
T ss_pred             ----CCcCEEECcCC-cCCCCCc-cccCCCCEEECCCCCCCCCCc--hhhcC------CCCCCEEECCC-CCCCC-cChH
Confidence                78999999985 5555544 346788888888875322223  33333      55788888887 66665 2222


Q ss_pred             CCcchhhhcccCCCCCCccEEEEecCCchhhhHHhhcCCCccceeeccccccceecccccCCCCCccEEEecCCCCCccC
Q 045021          178 ELPATLESLEVGNQPPSLKSLNVWSCSKLESIAERLDNNTSLEMISILWCENLKFLPSGLHNLRQLQEIQLWGCENLVSF  257 (461)
Q Consensus       178 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l  257 (461)
                      .+...         +++|+.|+++++. +..++ ....+++|++|++++| .+..+|..+..+++|+.|++++| .+..+
T Consensus       163 ~l~~~---------l~~L~~L~Ls~N~-l~~~~-~~~~l~~L~~L~Ls~N-~l~~~~~~~~~l~~L~~L~Ls~N-~l~~l  229 (487)
T 3oja_A          163 ELAAS---------SDTLEHLNLQYNF-IYDVK-GQVVFAKLKTLDLSSN-KLAFMGPEFQSAAGVTWISLRNN-KLVLI  229 (487)
T ss_dssp             GGGGG---------TTTCCEEECTTSC-CCEEE-CCCCCTTCCEEECCSS-CCCEECGGGGGGTTCSEEECTTS-CCCEE
T ss_pred             HHhhh---------CCcccEEecCCCc-ccccc-ccccCCCCCEEECCCC-CCCCCCHhHcCCCCccEEEecCC-cCccc
Confidence            22111         1567777777753 33333 2334777777777776 45555656777777777777776 45556


Q ss_pred             CCCCCCCCCcceEeeccCccc-cccccccCCCCCccEEEec
Q 045021          258 PEGGLPCAKLSKLGIYRCERL-EALPKGLHNLKSLKKLRIG  297 (461)
Q Consensus       258 ~~~~~~~~~L~~L~l~~c~~~-~~~~~~~~~l~~L~~L~l~  297 (461)
                      |.....+++|+.|++++|... ..+|..+..++.|+.+++.
T Consensus       230 p~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~  270 (487)
T 3oja_A          230 EKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ  270 (487)
T ss_dssp             CTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred             chhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence            665555667777777775543 2445556666666666554

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.73  E-value=3.4e-17  Score=151.20  Aligned_cols=179  Identities=24%  Similarity=0.270  Sum_probs=93.0

Q ss_pred             hhcCCCccceeeccccccceecccccCCCCCccEEEecCCCCCccC-CCCCCCCCCcceEeeccCccccccccccCCCCC
Q 045021          212 RLDNNTSLEMISILWCENLKFLPSGLHNLRQLQEIQLWGCENLVSF-PEGGLPCAKLSKLGIYRCERLEALPKGLHNLKS  290 (461)
Q Consensus       212 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l-~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~l~~  290 (461)
                      .+..+++|++|+++++......+..+..+++|++|++++|..+..+ +.....+++|++|++++|......+..+..+++
T Consensus        51 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~  130 (285)
T 1ozn_A           51 SFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAA  130 (285)
T ss_dssp             TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTT
T ss_pred             HcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcC
Confidence            3445555555555554222222445555555555555555434444 223334455566666554322222344555666


Q ss_pred             ccEEEecc-cCCCcCCC--CCCCCcceEEeecCchhhHHhhhhcccCCCCcCEEEEecCCCcccccCccccccCCCCCCC
Q 045021          291 LKKLRIGG-KLPSLEED--GLPTNLHFLKIERNMEIWKSMIERGFHKFSSLRHLTIEGCDDDMVSFPPEDRRLGTTLPLP  367 (461)
Q Consensus       291 L~~L~l~~-~~~~l~~~--~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~i~~~~~~~~~~~~~~  367 (461)
                      |++|++++ .+..++..  ..+++|++|++++|. ++ ..+...+..+++|++|++++|  .+..+....+      ..+
T Consensus       131 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~-~~~~~~~~~l~~L~~L~l~~n--~l~~~~~~~~------~~l  200 (285)
T 1ozn_A          131 LQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNR-IS-SVPERAFRGLHSLDRLLLHQN--RVAHVHPHAF------RDL  200 (285)
T ss_dssp             CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CC-EECTTTTTTCTTCCEEECCSS--CCCEECTTTT------TTC
T ss_pred             CCEEECCCCcccccCHhHhccCCCccEEECCCCc-cc-ccCHHHhcCccccCEEECCCC--cccccCHhHc------cCc
Confidence            66666665 44444432  334566666666664 22 122223555667777777765  4554433213      245


Q ss_pred             CCcceeecCCCCCCcccc-cchhhccCCcEEEecC
Q 045021          368 ASLASLTIGDFPNLERLS-SSIVDLQNLKYLKLYD  401 (461)
Q Consensus       368 ~~L~~L~l~~~~~l~~i~-~~~~~~~~L~~L~l~~  401 (461)
                      ++|+.|+++++ .+..++ ..+..+++|+.|++++
T Consensus       201 ~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~  234 (285)
T 1ozn_A          201 GRLMTLYLFAN-NLSALPTEALAPLRALQYLRLND  234 (285)
T ss_dssp             TTCCEEECCSS-CCSCCCHHHHTTCTTCCEEECCS
T ss_pred             ccccEeeCCCC-cCCcCCHHHcccCcccCEEeccC
Confidence            56777777763 555554 3456667777777776

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.73  E-value=4.3e-17  Score=146.39  Aligned_cols=197  Identities=15%  Similarity=0.117  Sum_probs=132.4

Q ss_pred             ccceeeccccccceecc-cccCCCCCccEEEecCCCCCccCCC-CCCCCCCcceEeeccCccccccc-cccCCCCCccEE
Q 045021          218 SLEMISILWCENLKFLP-SGLHNLRQLQEIQLWGCENLVSFPE-GGLPCAKLSKLGIYRCERLEALP-KGLHNLKSLKKL  294 (461)
Q Consensus       218 ~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~c~~~~~~~-~~~~~l~~L~~L  294 (461)
                      +|++|+++++ .+..++ ..+..+++|++|++++|..+..++. ....+++|++|++++|+.++.++ ..+..+++|++|
T Consensus        32 ~l~~L~l~~n-~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L  110 (239)
T 2xwt_C           32 STQTLKLIET-HLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL  110 (239)
T ss_dssp             TCCEEEEESC-CCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred             cccEEEEeCC-cceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence            4445555443 233333 2455566666666666543444443 23345566666666644555554 356677777777


Q ss_pred             Eecc-cCCCcCCCCCCCCcc---eEEeecCchhhHHhhhhcccCCCCcC-EEEEecCCCcccccCccccccCCCCCCCCC
Q 045021          295 RIGG-KLPSLEEDGLPTNLH---FLKIERNMEIWKSMIERGFHKFSSLR-HLTIEGCDDDMVSFPPEDRRLGTTLPLPAS  369 (461)
Q Consensus       295 ~l~~-~~~~l~~~~~~~~L~---~L~l~~~~~l~~~~~~~~~~~l~~L~-~L~l~~~~~~~~~i~~~~~~~~~~~~~~~~  369 (461)
                      ++++ .+..++....+++|+   +|++++|..++. .+...+..+++|+ +|++++|  ++..++...+       ..++
T Consensus       111 ~l~~n~l~~lp~~~~l~~L~~L~~L~l~~N~~l~~-i~~~~~~~l~~L~~~L~l~~n--~l~~i~~~~~-------~~~~  180 (239)
T 2xwt_C          111 GIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTS-IPVNAFQGLCNETLTLKLYNN--GFTSVQGYAF-------NGTK  180 (239)
T ss_dssp             EEEEECCCSCCCCTTCCBCCSEEEEEEESCTTCCE-ECTTTTTTTBSSEEEEECCSC--CCCEECTTTT-------TTCE
T ss_pred             eCCCCCCccccccccccccccccEEECCCCcchhh-cCcccccchhcceeEEEcCCC--CCcccCHhhc-------CCCC
Confidence            7777 666666555556666   899998843442 2333577899999 9999997  7888887633       2368


Q ss_pred             cceeecCCCCCCcccc-cchhhc-cCCcEEEecCCCCCcccCCCCCcccccEeeccCCch
Q 045021          370 LASLTIGDFPNLERLS-SSIVDL-QNLKYLKLYDCPKLKYFSEKGLPSSLLRLYIDECPL  427 (461)
Q Consensus       370 L~~L~l~~~~~l~~i~-~~~~~~-~~L~~L~l~~C~~l~~~~~~~~~~~L~~L~i~~c~~  427 (461)
                      |++|++++++.++.++ ..+..+ ++|+.|++++ ++++.+|.. .+++|+.|+++++..
T Consensus       181 L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~-N~l~~l~~~-~~~~L~~L~l~~~~~  238 (239)
T 2xwt_C          181 LDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQ-TSVTALPSK-GLEHLKELIARNTWT  238 (239)
T ss_dssp             EEEEECTTCTTCCEECTTTTTTCSBCCSEEECTT-CCCCCCCCT-TCTTCSEEECTTC--
T ss_pred             CCEEEcCCCCCcccCCHHHhhccccCCcEEECCC-CccccCChh-HhccCceeeccCccC
Confidence            9999999965688886 567788 9999999999 889998886 458999999998864

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.72  E-value=1.7e-16  Score=146.42  Aligned_cols=198  Identities=20%  Similarity=0.230  Sum_probs=105.0

Q ss_pred             cCccEEEEecCCCCeecccCCCCcchhhhcccCCCCCCccEEEEecCCchhhhHHhhcCCCccceeeccccccceec-cc
Q 045021          157 YLLEKLEIWDCPSLTCIFSKNELPATLESLEVGNQPPSLKSLNVWSCSKLESIAERLDNNTSLEMISILWCENLKFL-PS  235 (461)
Q Consensus       157 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~  235 (461)
                      ++++.|++++ +.++. ++...+...          ++|++|++.++......+..+..+++|++|++++|..+..+ +.
T Consensus        32 ~~l~~L~l~~-n~i~~-~~~~~~~~~----------~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~   99 (285)
T 1ozn_A           32 AASQRIFLHG-NRISH-VPAASFRAC----------RNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPA   99 (285)
T ss_dssp             TTCSEEECTT-SCCCE-ECTTTTTTC----------TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTT
T ss_pred             CCceEEEeeC-CcCCc-cCHHHcccC----------CCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHH
Confidence            4566666666 55555 443333222          45666666664222222445566666666666665434444 45


Q ss_pred             ccCCCCCccEEEecCCCCCccC-CCCCCCCCCcceEeeccCccccccc-cccCCCCCccEEEecc-cCCCcCCC--CCCC
Q 045021          236 GLHNLRQLQEIQLWGCENLVSF-PEGGLPCAKLSKLGIYRCERLEALP-KGLHNLKSLKKLRIGG-KLPSLEED--GLPT  310 (461)
Q Consensus       236 ~~~~l~~L~~L~l~~~~~l~~l-~~~~~~~~~L~~L~l~~c~~~~~~~-~~~~~l~~L~~L~l~~-~~~~l~~~--~~~~  310 (461)
                      .+..+++|++|++++|. +..+ +.....+++|++|++++|. ++.++ ..+..+++|++|++++ .+..++..  ..++
T Consensus       100 ~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~  177 (285)
T 1ozn_A          100 TFHGLGRLHTLHLDRCG-LQELGPGLFRGLAALQYLYLQDNA-LQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLH  177 (285)
T ss_dssp             TTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCT
T ss_pred             HhcCCcCCCEEECCCCc-CCEECHhHhhCCcCCCEEECCCCc-ccccCHhHhccCCCccEEECCCCcccccCHHHhcCcc
Confidence            56666666666666653 3333 2333445566666666643 33332 2455666666666666 55554432  3445


Q ss_pred             CcceEEeecCchhhHHhhhhcccCCCCcCEEEEecCCCcccccCccccccCCCCCCCCCcceeecCCC
Q 045021          311 NLHFLKIERNMEIWKSMIERGFHKFSSLRHLTIEGCDDDMVSFPPEDRRLGTTLPLPASLASLTIGDF  378 (461)
Q Consensus       311 ~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~i~~~~~~~~~~~~~~~~L~~L~l~~~  378 (461)
                      +|++|++++|. +... ....+..+++|++|++++|  .+..++...+      ..+++|+.|+++++
T Consensus       178 ~L~~L~l~~n~-l~~~-~~~~~~~l~~L~~L~l~~n--~l~~~~~~~~------~~l~~L~~L~l~~N  235 (285)
T 1ozn_A          178 SLDRLLLHQNR-VAHV-HPHAFRDLGRLMTLYLFAN--NLSALPTEAL------APLRALQYLRLNDN  235 (285)
T ss_dssp             TCCEEECCSSC-CCEE-CTTTTTTCTTCCEEECCSS--CCSCCCHHHH------TTCTTCCEEECCSS
T ss_pred             ccCEEECCCCc-cccc-CHhHccCcccccEeeCCCC--cCCcCCHHHc------ccCcccCEEeccCC
Confidence            66666666665 2211 1223555666666666665  5555554323      24456666666663

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.70  E-value=6.9e-17  Score=151.45  Aligned_cols=192  Identities=15%  Similarity=0.163  Sum_probs=81.6

Q ss_pred             hhcCCCccceeeccccccceecccccCCCCCccEEEecCCCCCccCCCCCCCCCCcceEeeccCccccccccccCCCCCc
Q 045021          212 RLDNNTSLEMISILWCENLKFLPSGLHNLRQLQEIQLWGCENLVSFPEGGLPCAKLSKLGIYRCERLEALPKGLHNLKSL  291 (461)
Q Consensus       212 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~l~~L  291 (461)
                      .+..+++|++|++++|. +...+. +..+++|++|++++| .+..++.    .++|++|++++|. ++.++  ...+++|
T Consensus        53 ~~~~l~~L~~L~Ls~n~-l~~~~~-~~~l~~L~~L~Ls~n-~l~~l~~----~~~L~~L~l~~n~-l~~~~--~~~~~~L  122 (317)
T 3o53_A           53 DLAPFTKLELLNLSSNV-LYETLD-LESLSTLRTLDLNNN-YVQELLV----GPSIETLHAANNN-ISRVS--CSRGQGK  122 (317)
T ss_dssp             HHTTCTTCCEEECTTSC-CEEEEE-ETTCTTCCEEECCSS-EEEEEEE----CTTCCEEECCSSC-CSEEE--ECCCSSC
T ss_pred             HhhCCCcCCEEECCCCc-CCcchh-hhhcCCCCEEECcCC-ccccccC----CCCcCEEECCCCc-cCCcC--ccccCCC
Confidence            44444455555554442 221221 444445555555444 2222221    1345555554432 22222  1224445


Q ss_pred             cEEEecc-cCCCcCCC--CCCCCcceEEeecCchhhHHhhhhcccCCCCcCEEEEecCCCcccccCccccccCCCCCCCC
Q 045021          292 KKLRIGG-KLPSLEED--GLPTNLHFLKIERNMEIWKSMIERGFHKFSSLRHLTIEGCDDDMVSFPPEDRRLGTTLPLPA  368 (461)
Q Consensus       292 ~~L~l~~-~~~~l~~~--~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~i~~~~~~~~~~~~~~~  368 (461)
                      ++|++++ .+..++..  ..+++|++|++++|. +....+......+++|++|++++|  .+..++..        ..++
T Consensus       123 ~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~l~~L~~L~L~~N--~l~~~~~~--------~~l~  191 (317)
T 3o53_A          123 KNIYLANNKITMLRDLDEGCRSRVQYLDLKLNE-IDTVNFAELAASSDTLEHLNLQYN--FIYDVKGQ--------VVFA  191 (317)
T ss_dssp             EEEECCSSCCCSGGGBCTGGGSSEEEEECTTSC-CCEEEGGGGGGGTTTCCEEECTTS--CCCEEECC--------CCCT
T ss_pred             CEEECCCCCCCCccchhhhccCCCCEEECCCCC-CCcccHHHHhhccCcCCEEECCCC--cCcccccc--------cccc
Confidence            5555555 44333322  223455555555544 221111111234455555555554  44444332        1344


Q ss_pred             CcceeecCCCCCCcccccchhhccCCcEEEecCCCCCcccCCC-CCcccccEeeccCCc
Q 045021          369 SLASLTIGDFPNLERLSSSIVDLQNLKYLKLYDCPKLKYFSEK-GLPSSLLRLYIDECP  426 (461)
Q Consensus       369 ~L~~L~l~~~~~l~~i~~~~~~~~~L~~L~l~~C~~l~~~~~~-~~~~~L~~L~i~~c~  426 (461)
                      +|++|++++ +.++.++..+..+++|++|++++ +.++.+|.. ...++|+.|++++|+
T Consensus       192 ~L~~L~Ls~-N~l~~l~~~~~~l~~L~~L~L~~-N~l~~l~~~~~~l~~L~~L~l~~N~  248 (317)
T 3o53_A          192 KLKTLDLSS-NKLAFMGPEFQSAAGVTWISLRN-NKLVLIEKALRFSQNLEHFDLRGNG  248 (317)
T ss_dssp             TCCEEECCS-SCCCEECGGGGGGTTCSEEECTT-SCCCEECTTCCCCTTCCEEECTTCC
T ss_pred             cCCEEECCC-CcCCcchhhhcccCcccEEECcC-CcccchhhHhhcCCCCCEEEccCCC
Confidence            555555555 24444444445555555555555 445544442 113455555555543

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.68  E-value=2.1e-15  Score=143.32  Aligned_cols=100  Identities=22%  Similarity=0.222  Sum_probs=63.1

Q ss_pred             CccEEEEecCCchhhhHHhhcCCCccceeeccccccceeccc-ccCCCCCccEEEecCCCCCccCCCCCCCCCCcceEee
Q 045021          194 SLKSLNVWSCSKLESIAERLDNNTSLEMISILWCENLKFLPS-GLHNLRQLQEIQLWGCENLVSFPEGGLPCAKLSKLGI  272 (461)
Q Consensus       194 ~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l  272 (461)
                      .++.|++.+ ..+..++.......+|+++.+.++..+..+|. .+..+++|+.|++++| .+..+|...  +.+|+.|.+
T Consensus       155 ~l~~L~L~~-N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N-~l~~lp~~~--~~~L~~L~~  230 (350)
T 4ay9_X          155 ESVILWLNK-NGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRT-RIHSLPSYG--LENLKKLRA  230 (350)
T ss_dssp             SCEEEECCS-SCCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTS-CCCCCCSSS--CTTCCEEEC
T ss_pred             hhhhhcccc-ccccCCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCC-CcCccChhh--hccchHhhh
Confidence            356666665 34444444444456677777766556666663 4677777788888776 566666543  336777777


Q ss_pred             ccCccccccccccCCCCCccEEEecc
Q 045021          273 YRCERLEALPKGLHNLKSLKKLRIGG  298 (461)
Q Consensus       273 ~~c~~~~~~~~~~~~l~~L~~L~l~~  298 (461)
                      .++..++.+|. +..+++|+.+++.+
T Consensus       231 l~~~~l~~lP~-l~~l~~L~~l~l~~  255 (350)
T 4ay9_X          231 RSTYNLKKLPT-LEKLVALMEASLTY  255 (350)
T ss_dssp             TTCTTCCCCCC-TTTCCSCCEEECSC
T ss_pred             ccCCCcCcCCC-chhCcChhhCcCCC
Confidence            77777777764 66666666666644

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.67  E-value=1.4e-15  Score=136.52  Aligned_cols=205  Identities=15%  Similarity=0.231  Sum_probs=118.5

Q ss_pred             cccccCCCCCCCccEEEEeecCCccccCcccccCCCCcccEEEeeCCCCCcccccc--CCCCCccEEecccCCCceEecc
Q 045021           66 LVSFPEVALPSKLKKIEIRECDALKSLPEAWMCGTNSSLEILKIWSCHSLPYIARV--QLPPSLKRLDISHCDNIRTLTV  143 (461)
Q Consensus        66 l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~--~~~~~L~~L~l~~~~~~~~l~~  143 (461)
                      ++.+|.  ...+|++|+++++. ++.++...+.. +++|+.|+++++..++.++..  ..+++|++|++++         
T Consensus        23 l~~ip~--~~~~l~~L~l~~n~-l~~i~~~~~~~-l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~---------   89 (239)
T 2xwt_C           23 IQRIPS--LPPSTQTLKLIETH-LRTIPSHAFSN-LPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRN---------   89 (239)
T ss_dssp             CSSCCC--CCTTCCEEEEESCC-CSEECTTTTTT-CTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEE---------
T ss_pred             ccccCC--CCCcccEEEEeCCc-ceEECHHHccC-CCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCC---------
Confidence            555554  44466666666644 55555532221 256666666654334444332  3344444444444         


Q ss_pred             CCCcccccccccccCccEEEEecCCCCeecccCCCCcchhhhcccCCCCCCccEEEEecCCchhhhHHhhcCCCccc---
Q 045021          144 EDGIQSSSRRYTSYLLEKLEIWDCPSLTCIFSKNELPATLESLEVGNQPPSLKSLNVWSCSKLESIAERLDNNTSLE---  220 (461)
Q Consensus       144 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~---  220 (461)
                                             |+.++. ++...+...          ++|+.|++.++ .+..++. +..+++|+   
T Consensus        90 -----------------------~n~l~~-i~~~~f~~l----------~~L~~L~l~~n-~l~~lp~-~~~l~~L~~L~  133 (239)
T 2xwt_C           90 -----------------------TRNLTY-IDPDALKEL----------PLLKFLGIFNT-GLKMFPD-LTKVYSTDIFF  133 (239)
T ss_dssp             -----------------------ETTCCE-ECTTSEECC----------TTCCEEEEEEE-CCCSCCC-CTTCCBCCSEE
T ss_pred             -----------------------CCCeeE-cCHHHhCCC----------CCCCEEeCCCC-CCccccc-ccccccccccc
Confidence                                   344443 332222211          34555555553 2333333 45555555   


Q ss_pred             eeeccccccceecc-cccCCCCCcc-EEEecCCCCCccCCCCCCCCCCcceEeeccCccccccc-cccCCC-CCccEEEe
Q 045021          221 MISILWCENLKFLP-SGLHNLRQLQ-EIQLWGCENLVSFPEGGLPCAKLSKLGIYRCERLEALP-KGLHNL-KSLKKLRI  296 (461)
Q Consensus       221 ~L~l~~~~~~~~~~-~~~~~l~~L~-~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~~~~~~-~~~~~l-~~L~~L~l  296 (461)
                      +|++++|..+..++ ..+..+++|+ .|++++| .+..++...+..++|++|++++|..++.++ ..+..+ ++|++|++
T Consensus       134 ~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n-~l~~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l  212 (239)
T 2xwt_C          134 ILEITDNPYMTSIPVNAFQGLCNETLTLKLYNN-GFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDV  212 (239)
T ss_dssp             EEEEESCTTCCEECTTTTTTTBSSEEEEECCSC-CCCEECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEEC
T ss_pred             EEECCCCcchhhcCcccccchhcceeEEEcCCC-CCcccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEEC
Confidence            77777764555554 3577788888 8888876 455666644444678888888875566664 356777 88888888


Q ss_pred             cc-cCCCcCCCCCCCCcceEEeecCc
Q 045021          297 GG-KLPSLEEDGLPTNLHFLKIERNM  321 (461)
Q Consensus       297 ~~-~~~~l~~~~~~~~L~~L~l~~~~  321 (461)
                      ++ .+..++.. .+++|+.|++.++.
T Consensus       213 ~~N~l~~l~~~-~~~~L~~L~l~~~~  237 (239)
T 2xwt_C          213 SQTSVTALPSK-GLEHLKELIARNTW  237 (239)
T ss_dssp             TTCCCCCCCCT-TCTTCSEEECTTC-
T ss_pred             CCCccccCChh-HhccCceeeccCcc
Confidence            88 77777655 56678888877765

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.67  E-value=2.5e-16  Score=156.31  Aligned_cols=192  Identities=15%  Similarity=0.161  Sum_probs=84.7

Q ss_pred             hhcCCCccceeeccccccceecccccCCCCCccEEEecCCCCCccCCCCCCCCCCcceEeeccCccccccccccCCCCCc
Q 045021          212 RLDNNTSLEMISILWCENLKFLPSGLHNLRQLQEIQLWGCENLVSFPEGGLPCAKLSKLGIYRCERLEALPKGLHNLKSL  291 (461)
Q Consensus       212 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~l~~L  291 (461)
                      .+..+++|++|++++|. +...++ +..+++|++|++++| .+..++.    .++|++|++++|. ++.++.  ..+++|
T Consensus        53 ~~~~l~~L~~L~Ls~N~-l~~~~~-l~~l~~L~~L~Ls~N-~l~~l~~----~~~L~~L~L~~N~-l~~~~~--~~l~~L  122 (487)
T 3oja_A           53 DLAPFTKLELLNLSSNV-LYETLD-LESLSTLRTLDLNNN-YVQELLV----GPSIETLHAANNN-ISRVSC--SRGQGK  122 (487)
T ss_dssp             GGTTCTTCCEEECTTSC-CEEEEE-CTTCTTCCEEECCSS-EEEEEEE----CTTCCEEECCSSC-CCCEEE--CCCSSC
T ss_pred             HHhCCCCCCEEEeeCCC-CCCCcc-cccCCCCCEEEecCC-cCCCCCC----CCCcCEEECcCCc-CCCCCc--cccCCC
Confidence            44444555555554442 221111 444455555555544 2232221    1345555555432 222221  233445


Q ss_pred             cEEEecc-cCCCcCCC--CCCCCcceEEeecCchhhHHhhhhcccCCCCcCEEEEecCCCcccccCccccccCCCCCCCC
Q 045021          292 KKLRIGG-KLPSLEED--GLPTNLHFLKIERNMEIWKSMIERGFHKFSSLRHLTIEGCDDDMVSFPPEDRRLGTTLPLPA  368 (461)
Q Consensus       292 ~~L~l~~-~~~~l~~~--~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~i~~~~~~~~~~~~~~~  368 (461)
                      ++|++++ .+..++..  ..+++|++|++++|. +....+......+++|++|++++|  .+..++..        ..++
T Consensus       123 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~l~~~l~~L~~L~Ls~N--~l~~~~~~--------~~l~  191 (487)
T 3oja_A          123 KNIYLANNKITMLRDLDEGCRSRVQYLDLKLNE-IDTVNFAELAASSDTLEHLNLQYN--FIYDVKGQ--------VVFA  191 (487)
T ss_dssp             EEEECCSSCCCSGGGBCGGGGSSEEEEECTTSC-CCEEEGGGGGGGTTTCCEEECTTS--CCCEEECC--------CCCT
T ss_pred             CEEECCCCCCCCCCchhhcCCCCCCEEECCCCC-CCCcChHHHhhhCCcccEEecCCC--cccccccc--------ccCC
Confidence            5555555 33333221  223455555555554 221122211224555555555555  44444332        1344


Q ss_pred             CcceeecCCCCCCcccccchhhccCCcEEEecCCCCCcccCCC-CCcccccEeeccCCc
Q 045021          369 SLASLTIGDFPNLERLSSSIVDLQNLKYLKLYDCPKLKYFSEK-GLPSSLLRLYIDECP  426 (461)
Q Consensus       369 ~L~~L~l~~~~~l~~i~~~~~~~~~L~~L~l~~C~~l~~~~~~-~~~~~L~~L~i~~c~  426 (461)
                      +|+.|++++ +.+..++..+..+++|+.|++++ +.++.+|.. ..+++|+.|++++|+
T Consensus       192 ~L~~L~Ls~-N~l~~~~~~~~~l~~L~~L~Ls~-N~l~~lp~~l~~l~~L~~L~l~~N~  248 (487)
T 3oja_A          192 KLKTLDLSS-NKLAFMGPEFQSAAGVTWISLRN-NKLVLIEKALRFSQNLEHFDLRGNG  248 (487)
T ss_dssp             TCCEEECCS-SCCCEECGGGGGGTTCSEEECTT-SCCCEECTTCCCCTTCCEEECTTCC
T ss_pred             CCCEEECCC-CCCCCCCHhHcCCCCccEEEecC-CcCcccchhhccCCCCCEEEcCCCC
Confidence            555555555 34555544455555555555555 455555442 123555555555554

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.67  E-value=4e-18  Score=159.53  Aligned_cols=199  Identities=14%  Similarity=0.067  Sum_probs=126.8

Q ss_pred             CCCccceeeccccccceeccccc--CCCCCccEEEecCCCCCccCCCCCCCC-----CCcceEeeccCccccccccccCC
Q 045021          215 NNTSLEMISILWCENLKFLPSGL--HNLRQLQEIQLWGCENLVSFPEGGLPC-----AKLSKLGIYRCERLEALPKGLHN  287 (461)
Q Consensus       215 ~l~~L~~L~l~~~~~~~~~~~~~--~~l~~L~~L~l~~~~~l~~l~~~~~~~-----~~L~~L~l~~c~~~~~~~~~~~~  287 (461)
                      .+++|++|++++|.....+|..+  ..+++|++|++++| .+...+.....+     ++|++|++++|.-....+..++.
T Consensus        93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~  171 (312)
T 1wwl_A           93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNV-SWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRV  171 (312)
T ss_dssp             TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESC-BCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCC
T ss_pred             CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCC-CCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhcc
Confidence            56677777777764444555554  66777777777776 334333322111     57777777775433333356777


Q ss_pred             CCCccEEEecc-cCCC----cCCC--CCCCCcceEEeecCchhh-HHhhhhcccCCCCcCEEEEecCCCcccccC-cccc
Q 045021          288 LKSLKKLRIGG-KLPS----LEED--GLPTNLHFLKIERNMEIW-KSMIERGFHKFSSLRHLTIEGCDDDMVSFP-PEDR  358 (461)
Q Consensus       288 l~~L~~L~l~~-~~~~----l~~~--~~~~~L~~L~l~~~~~l~-~~~~~~~~~~l~~L~~L~l~~~~~~~~~i~-~~~~  358 (461)
                      +++|++|++++ .+..    .+..  ..+++|++|++++|..-. .......+..+++|++|++++|  .+...+ ...+
T Consensus       172 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N--~l~~~~~~~~~  249 (312)
T 1wwl_A          172 FPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHN--SLRDAAGAPSC  249 (312)
T ss_dssp             CSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTS--CCCSSCCCSCC
T ss_pred             CCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCC--cCCcccchhhh
Confidence            77777777777 4321    1112  455678888888876321 1222234567788889998887  565543 2212


Q ss_pred             ccCCCCCCCCCcceeecCCCCCCcccccchhhccCCcEEEecCCCCCcccCCCCCcccccEeeccCCc
Q 045021          359 RLGTTLPLPASLASLTIGDFPNLERLSSSIVDLQNLKYLKLYDCPKLKYFSEKGLPSSLLRLYIDECP  426 (461)
Q Consensus       359 ~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~L~~L~l~~C~~l~~~~~~~~~~~L~~L~i~~c~  426 (461)
                            ..+++|++|++++ +.++.+|..+.  ++|++|++++ ++++.+|.-...++|++|++++++
T Consensus       250 ------~~l~~L~~L~Ls~-N~l~~ip~~~~--~~L~~L~Ls~-N~l~~~p~~~~l~~L~~L~L~~N~  307 (312)
T 1wwl_A          250 ------DWPSQLNSLNLSF-TGLKQVPKGLP--AKLSVLDLSY-NRLDRNPSPDELPQVGNLSLKGNP  307 (312)
T ss_dssp             ------CCCTTCCEEECTT-SCCSSCCSSCC--SEEEEEECCS-SCCCSCCCTTTSCEEEEEECTTCT
T ss_pred             ------hhcCCCCEEECCC-CccChhhhhcc--CCceEEECCC-CCCCCChhHhhCCCCCEEeccCCC
Confidence                  2467888999988 46778876554  7888999988 788888664446888888888875

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.66  E-value=1.6e-15  Score=144.18  Aligned_cols=236  Identities=18%  Similarity=0.191  Sum_probs=160.0

Q ss_pred             EEecccCCCceEeccCCCcccccccccccCccEEEEecCCCCeecccCCCCcchhhhcccCCCCCCccEEEEecCCchhh
Q 045021          129 RLDISHCDNIRTLTVEDGIQSSSRRYTSYLLEKLEIWDCPSLTCIFSKNELPATLESLEVGNQPPSLKSLNVWSCSKLES  208 (461)
Q Consensus       129 ~L~l~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~  208 (461)
                      +++.++ ..++++|  .++.        +++++|++++ ++++. ++.+.+...          ++|++|+++++...+.
T Consensus        13 ~v~C~~-~~Lt~iP--~~l~--------~~l~~L~Ls~-N~i~~-i~~~~f~~l----------~~L~~L~Ls~N~i~~~   69 (350)
T 4ay9_X           13 VFLCQE-SKVTEIP--SDLP--------RNAIELRFVL-TKLRV-IQKGAFSGF----------GDLEKIEISQNDVLEV   69 (350)
T ss_dssp             EEEEES-TTCCSCC--TTCC--------TTCSEEEEES-CCCSE-ECTTSSTTC----------TTCCEEEEECCTTCCE
T ss_pred             EEEecC-CCCCccC--cCcC--------CCCCEEEccC-CcCCC-cCHHHHcCC----------CCCCEEECcCCCCCCc
Confidence            344444 2355666  5442        2677788877 77777 665555443          5788888887655555


Q ss_pred             hHH-hhcCCCccceeeccccccceec-ccccCCCCCccEEEecCCCCCccCCC-CCCCCCCcceEeeccCcccccccc-c
Q 045021          209 IAE-RLDNNTSLEMISILWCENLKFL-PSGLHNLRQLQEIQLWGCENLVSFPE-GGLPCAKLSKLGIYRCERLEALPK-G  284 (461)
Q Consensus       209 ~~~-~~~~l~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~c~~~~~~~~-~  284 (461)
                      ++. .+..+++++++....+..+..+ +..+..+++|++|++++| .+..++. .......+..+++.++..+..++. .
T Consensus        70 i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n-~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~  148 (350)
T 4ay9_X           70 IEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNT-GIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNS  148 (350)
T ss_dssp             ECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEE-CCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTS
T ss_pred             cChhHhhcchhhhhhhcccCCcccccCchhhhhcccccccccccc-ccccCCchhhcccchhhhhhhccccccccccccc
Confidence            543 5677777776555444456555 467788888999988887 4555554 333445677888877777776654 4


Q ss_pred             cCCC-CCccEEEecc-cCCCcCCCC-CCCCcceEEeecCchhhHHhhhhcccCCCCcCEEEEecCCCcccccCccccccC
Q 045021          285 LHNL-KSLKKLRIGG-KLPSLEEDG-LPTNLHFLKIERNMEIWKSMIERGFHKFSSLRHLTIEGCDDDMVSFPPEDRRLG  361 (461)
Q Consensus       285 ~~~l-~~L~~L~l~~-~~~~l~~~~-~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~i~~~~~~~~  361 (461)
                      +..+ ..++.|++++ .++.++... ...+|+++++.++..++ ..+...+..+++|++|++++|  .+..+|..     
T Consensus       149 f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~-~i~~~~f~~l~~L~~LdLs~N--~l~~lp~~-----  220 (350)
T 4ay9_X          149 FVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLE-ELPNDVFHGASGPVILDISRT--RIHSLPSY-----  220 (350)
T ss_dssp             STTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTTCC-CCCTTTTTTEECCSEEECTTS--CCCCCCSS-----
T ss_pred             hhhcchhhhhhccccccccCCChhhccccchhHHhhccCCccc-CCCHHHhccCcccchhhcCCC--CcCccChh-----
Confidence            4454 4688888888 777776552 34578888887766554 233345778888889999887  78888875     


Q ss_pred             CCCCCCCCcceeecCCCCCCcccccchhhccCCcEEEecC
Q 045021          362 TTLPLPASLASLTIGDFPNLERLSSSIVDLQNLKYLKLYD  401 (461)
Q Consensus       362 ~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~L~~L~l~~  401 (461)
                          .+.+|+.|.+.+++.++.+| .+..+++|+.+++.+
T Consensus       221 ----~~~~L~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~~  255 (350)
T 4ay9_X          221 ----GLENLKKLRARSTYNLKKLP-TLEKLVALMEASLTY  255 (350)
T ss_dssp             ----SCTTCCEEECTTCTTCCCCC-CTTTCCSCCEEECSC
T ss_pred             ----hhccchHhhhccCCCcCcCC-CchhCcChhhCcCCC
Confidence                55688888888888888886 467788888888865

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.64  E-value=3.2e-16  Score=146.58  Aligned_cols=202  Identities=19%  Similarity=0.120  Sum_probs=115.0

Q ss_pred             CCCCccEEEecCCCCCccCCCCC--CCCCCcceEeeccCccccccccccCCC-----CCccEEEecc-cCCCcCCC--CC
Q 045021          239 NLRQLQEIQLWGCENLVSFPEGG--LPCAKLSKLGIYRCERLEALPKGLHNL-----KSLKKLRIGG-KLPSLEED--GL  308 (461)
Q Consensus       239 ~l~~L~~L~l~~~~~l~~l~~~~--~~~~~L~~L~l~~c~~~~~~~~~~~~l-----~~L~~L~l~~-~~~~l~~~--~~  308 (461)
                      .+++|++|++++|.....++...  ..+++|++|++++|. ++.+|..++.+     ++|++|++++ .+..++..  ..
T Consensus        93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~  171 (312)
T 1wwl_A           93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVS-WATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRV  171 (312)
T ss_dssp             TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCB-CSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCC
T ss_pred             CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCC-CcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhcc
Confidence            46777777777764333455433  456677777777753 33335545444     6777777777 55555522  45


Q ss_pred             CCCcceEEeecCchhhHH--hhhhcccCCCCcCEEEEecCCCcccccC---ccccccCCCCCCCCCcceeecCCCCCCcc
Q 045021          309 PTNLHFLKIERNMEIWKS--MIERGFHKFSSLRHLTIEGCDDDMVSFP---PEDRRLGTTLPLPASLASLTIGDFPNLER  383 (461)
Q Consensus       309 ~~~L~~L~l~~~~~l~~~--~~~~~~~~l~~L~~L~l~~~~~~~~~i~---~~~~~~~~~~~~~~~L~~L~l~~~~~l~~  383 (461)
                      +++|++|++++|......  .....+..+++|++|++++|  .+..++   ...+      ..+++|++|+++++ .+..
T Consensus       172 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N--~l~~~~~~~~~~~------~~l~~L~~L~Ls~N-~l~~  242 (312)
T 1wwl_A          172 FPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNA--GMETPSGVCSALA------AARVQLQGLDLSHN-SLRD  242 (312)
T ss_dssp             CSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTS--CCCCHHHHHHHHH------HTTCCCSEEECTTS-CCCS
T ss_pred             CCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCC--cCcchHHHHHHHH------hcCCCCCEEECCCC-cCCc
Confidence            667777777777632211  11112366777777777776  554322   2111      13457777777773 4544


Q ss_pred             cc--cchhhccCCcEEEecCCCCCcccCCCCCcccccEeeccCCchhHHhhcccCccccccccccceEEEcccEEecC
Q 045021          384 LS--SSIVDLQNLKYLKLYDCPKLKYFSEKGLPSSLLRLYIDECPLIEEKCRKDGEQYWDLLTHIPRVRIHLPVVFDD  459 (461)
Q Consensus       384 i~--~~~~~~~~L~~L~l~~C~~l~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  459 (461)
                      .+  ..+..+++|++|++++ ++++.+|.... ++|++|++++|..-     ..  +.+..+.++..+++.+|.+.+.
T Consensus       243 ~~~~~~~~~l~~L~~L~Ls~-N~l~~ip~~~~-~~L~~L~Ls~N~l~-----~~--p~~~~l~~L~~L~L~~N~l~~~  311 (312)
T 1wwl_A          243 AAGAPSCDWPSQLNSLNLSF-TGLKQVPKGLP-AKLSVLDLSYNRLD-----RN--PSPDELPQVGNLSLKGNPFLDS  311 (312)
T ss_dssp             SCCCSCCCCCTTCCEEECTT-SCCSSCCSSCC-SEEEEEECCSSCCC-----SC--CCTTTSCEEEEEECTTCTTTCC
T ss_pred             ccchhhhhhcCCCCEEECCC-CccChhhhhcc-CCceEEECCCCCCC-----CC--hhHhhCCCCCEEeccCCCCCCC
Confidence            32  3344567777777777 56666665333 67777777776321     11  2244556666667777665543

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.64  E-value=2.1e-15  Score=140.67  Aligned_cols=193  Identities=16%  Similarity=0.223  Sum_probs=147.5

Q ss_pred             CCccEEEEecCCchhhhHHhhcCCCccceeeccccccceecccccCCCCCccEEEecCCCCCccCCCCCCCCCCcceEee
Q 045021          193 PSLKSLNVWSCSKLESIAERLDNNTSLEMISILWCENLKFLPSGLHNLRQLQEIQLWGCENLVSFPEGGLPCAKLSKLGI  272 (461)
Q Consensus       193 ~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l  272 (461)
                      ++|++|++.++ .+..++ .+..+++|++|++++| .+..++. +..+++|++|++++|. +..++ ....+++|++|++
T Consensus        41 ~~L~~L~l~~~-~i~~l~-~~~~l~~L~~L~L~~n-~i~~~~~-~~~l~~L~~L~L~~n~-l~~~~-~~~~l~~L~~L~l  114 (308)
T 1h6u_A           41 DGITTLSAFGT-GVTTIE-GVQYLNNLIGLELKDN-QITDLAP-LKNLTKITELELSGNP-LKNVS-AIAGLQSIKTLDL  114 (308)
T ss_dssp             HTCCEEECTTS-CCCCCT-TGGGCTTCCEEECCSS-CCCCCGG-GTTCCSCCEEECCSCC-CSCCG-GGTTCTTCCEEEC
T ss_pred             CCcCEEEeeCC-CccCch-hhhccCCCCEEEccCC-cCCCChh-HccCCCCCEEEccCCc-CCCch-hhcCCCCCCEEEC
Confidence            57999999885 455554 5778899999999987 5555555 8888999999999884 55554 3445678999999


Q ss_pred             ccCccccccccccCCCCCccEEEecc-cCCCcCCCCCCCCcceEEeecCchhhHHhhhhcccCCCCcCEEEEecCCCccc
Q 045021          273 YRCERLEALPKGLHNLKSLKKLRIGG-KLPSLEEDGLPTNLHFLKIERNMEIWKSMIERGFHKFSSLRHLTIEGCDDDMV  351 (461)
Q Consensus       273 ~~c~~~~~~~~~~~~l~~L~~L~l~~-~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~  351 (461)
                      ++|. ++.++. +..+++|++|++++ .+..++....+++|++|++++|. +.+..   .+..+++|++|++++|  .+.
T Consensus       115 ~~n~-l~~~~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~-l~~~~---~l~~l~~L~~L~l~~n--~l~  186 (308)
T 1h6u_A          115 TSTQ-ITDVTP-LAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQ-VSDLT---PLANLSKLTTLKADDN--KIS  186 (308)
T ss_dssp             TTSC-CCCCGG-GTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSC-CCCCG---GGTTCTTCCEEECCSS--CCC
T ss_pred             CCCC-CCCchh-hcCCCCCCEEECCCCccCcCccccCCCCccEEEccCCc-CCCCh---hhcCCCCCCEEECCCC--ccC
Confidence            9864 555654 88899999999998 77777666677889999999886 33222   2678899999999987  676


Q ss_pred             ccCccccccCCCCCCCCCcceeecCCCCCCcccccchhhccCCcEEEecCCCCCcccCC
Q 045021          352 SFPPEDRRLGTTLPLPASLASLTIGDFPNLERLSSSIVDLQNLKYLKLYDCPKLKYFSE  410 (461)
Q Consensus       352 ~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~L~~L~l~~C~~l~~~~~  410 (461)
                      .++.  +      ..+++|++|+++++ .+..++ .+..+++|+.|++++ +.++..|.
T Consensus       187 ~~~~--l------~~l~~L~~L~L~~N-~l~~~~-~l~~l~~L~~L~l~~-N~i~~~~~  234 (308)
T 1h6u_A          187 DISP--L------ASLPNLIEVHLKNN-QISDVS-PLANTSNLFIVTLTN-QTITNQPV  234 (308)
T ss_dssp             CCGG--G------GGCTTCCEEECTTS-CCCBCG-GGTTCTTCCEEEEEE-EEEECCCE
T ss_pred             cChh--h------cCCCCCCEEEccCC-ccCccc-cccCCCCCCEEEccC-CeeecCCe
Confidence            6665  2      36679999999984 677775 478889999999998 66776555

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.62  E-value=4.5e-15  Score=136.24  Aligned_cols=195  Identities=19%  Similarity=0.158  Sum_probs=120.4

Q ss_pred             CCccEEEEecCCchhhhH-HhhcCCCccceeeccccccceecccccCCCCCccEEEecCCCCCccCC-CCCCCCCCcceE
Q 045021          193 PSLKSLNVWSCSKLESIA-ERLDNNTSLEMISILWCENLKFLPSGLHNLRQLQEIQLWGCENLVSFP-EGGLPCAKLSKL  270 (461)
Q Consensus       193 ~~L~~L~l~~~~~l~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~-~~~~~~~~L~~L  270 (461)
                      +++++|+++++ .+..++ ..+..+++|++|++++|......+..+..+++|++|++++|. +..++ .....+++|++|
T Consensus        28 ~~l~~L~ls~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L  105 (276)
T 2z62_A           28 FSTKNLDLSFN-PLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP-IQSLALGAFSGLSSLQKL  105 (276)
T ss_dssp             TTCCEEECTTC-CCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC-CCEECTTTTTTCTTCCEE
T ss_pred             CCccEEECCCC-cccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCc-cCccChhhhcCCccccEE
Confidence            45888888885 344433 367788888888888873333334567888888888888873 44443 345566788888


Q ss_pred             eeccCccccccccccCCCCCccEEEecc-cCCC--cCCC-CCCCCcceEEeecCchhhHHhhhhcccCCCCcC----EEE
Q 045021          271 GIYRCERLEALPKGLHNLKSLKKLRIGG-KLPS--LEED-GLPTNLHFLKIERNMEIWKSMIERGFHKFSSLR----HLT  342 (461)
Q Consensus       271 ~l~~c~~~~~~~~~~~~l~~L~~L~l~~-~~~~--l~~~-~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~----~L~  342 (461)
                      ++.+|......+..+..+++|++|++++ .+..  ++.. ..+++|++|++++|.. +.. +...+..+++|+    +|+
T Consensus       106 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l-~~~-~~~~~~~l~~L~~l~l~L~  183 (276)
T 2z62_A          106 VAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI-QSI-YCTDLRVLHQMPLLNLSLD  183 (276)
T ss_dssp             ECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCC-CEE-CGGGGHHHHTCTTCCEEEE
T ss_pred             ECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCC-CcC-CHHHhhhhhhccccceeee
Confidence            8887643332233577788888888877 5554  2322 4456777777777752 211 111233333333    677


Q ss_pred             EecCCCcccccCccccccCCCCCCCCCcceeecCCCCCCccccc-chhhccCCcEEEecC
Q 045021          343 IEGCDDDMVSFPPEDRRLGTTLPLPASLASLTIGDFPNLERLSS-SIVDLQNLKYLKLYD  401 (461)
Q Consensus       343 l~~~~~~~~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~-~~~~~~~L~~L~l~~  401 (461)
                      +++|  .+..++...+       ...+|++|+++++ .++.++. .+..+++|+.|++++
T Consensus       184 ls~n--~l~~~~~~~~-------~~~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~  233 (276)
T 2z62_A          184 LSLN--PMNFIQPGAF-------KEIRLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHT  233 (276)
T ss_dssp             CCSS--CCCEECTTSS-------CSCCEEEEECCSS-CCSCCCTTTTTTCCSCCEEECCS
T ss_pred             cCCC--cccccCcccc-------CCCcccEEECCCC-ceeecCHhHhcccccccEEEccC
Confidence            7776  5666655422       2336777777773 5666653 346677777777776

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.61  E-value=6.1e-15  Score=136.12  Aligned_cols=193  Identities=18%  Similarity=0.134  Sum_probs=136.7

Q ss_pred             ccCccEEEEecCCCCeecccCCCCcchhhhcccCCCCCCccEEEEecCCchhhhHHhhcCCCccceeeccccccceeccc
Q 045021          156 SYLLEKLEIWDCPSLTCIFSKNELPATLESLEVGNQPPSLKSLNVWSCSKLESIAERLDNNTSLEMISILWCENLKFLPS  235 (461)
Q Consensus       156 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~  235 (461)
                      +++++.+++++ +.++. +|....             ++++.|++.++......+..+..+++|++|+++++ .+..++.
T Consensus         9 l~~l~~l~~~~-~~l~~-ip~~~~-------------~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~   72 (290)
T 1p9a_G            9 VASHLEVNCDK-RNLTA-LPPDLP-------------KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA-ELTKLQV   72 (290)
T ss_dssp             STTCCEEECTT-SCCSS-CCSCCC-------------TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTS-CCCEEEC
T ss_pred             cCCccEEECCC-CCCCc-CCCCCC-------------CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCC-ccCcccC
Confidence            56788898888 77776 554432             35889999886543334567888899999999886 4555554


Q ss_pred             ccCCCCCccEEEecCCCCCccCCCCCCCCCCcceEeeccCccccccc-cccCCCCCccEEEecc-cCCCcCCC--CCCCC
Q 045021          236 GLHNLRQLQEIQLWGCENLVSFPEGGLPCAKLSKLGIYRCERLEALP-KGLHNLKSLKKLRIGG-KLPSLEED--GLPTN  311 (461)
Q Consensus       236 ~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~~~~~~-~~~~~l~~L~~L~l~~-~~~~l~~~--~~~~~  311 (461)
                      . +.+++|++|++++| .+..++.....+++|++|++++| .++.++ ..+..+++|++|++++ .+..++..  ..+++
T Consensus        73 ~-~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~l~~N-~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~  149 (290)
T 1p9a_G           73 D-GTLPVLGTLDLSHN-QLQSLPLLGQTLPALTVLDVSFN-RLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPK  149 (290)
T ss_dssp             C-SCCTTCCEEECCSS-CCSSCCCCTTTCTTCCEEECCSS-CCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTT
T ss_pred             C-CCCCcCCEEECCCC-cCCcCchhhccCCCCCEEECCCC-cCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccC
Confidence            3 67888999999887 56677776677778899998885 455554 4678888888888888 77766654  34567


Q ss_pred             cceEEeecCchhhHHhhhhcccCCCCcCEEEEecCCCcccccCccccccCCCCCCCCCcceeecCCC
Q 045021          312 LHFLKIERNMEIWKSMIERGFHKFSSLRHLTIEGCDDDMVSFPPEDRRLGTTLPLPASLASLTIGDF  378 (461)
Q Consensus       312 L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~i~~~~~~~~~~~~~~~~L~~L~l~~~  378 (461)
                      |+.|++++|. ++ ..+...+..+++|++|++++|  .+..++.. +      ...++|+.|+++++
T Consensus       150 L~~L~L~~N~-l~-~l~~~~~~~l~~L~~L~L~~N--~l~~ip~~-~------~~~~~L~~l~L~~N  205 (290)
T 1p9a_G          150 LEKLSLANNN-LT-ELPAGLLNGLENLDTLLLQEN--SLYTIPKG-F------FGSHLLPFAFLHGN  205 (290)
T ss_dssp             CCEEECTTSC-CS-CCCTTTTTTCTTCCEEECCSS--CCCCCCTT-T------TTTCCCSEEECCSC
T ss_pred             CCEEECCCCc-CC-ccCHHHhcCcCCCCEEECCCC--cCCccChh-h------cccccCCeEEeCCC
Confidence            8888888776 33 233334566778888888876  67777765 3      13457788888764

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.61  E-value=2.1e-14  Score=131.21  Aligned_cols=191  Identities=25%  Similarity=0.352  Sum_probs=106.9

Q ss_pred             CccEEEEecCCchhhhHHhhcCCCccceeeccccccceecc-cccCCCCCccEEEecCCCCCccCCCCC-CCCCCcceEe
Q 045021          194 SLKSLNVWSCSKLESIAERLDNNTSLEMISILWCENLKFLP-SGLHNLRQLQEIQLWGCENLVSFPEGG-LPCAKLSKLG  271 (461)
Q Consensus       194 ~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~l~~l~~~~-~~~~~L~~L~  271 (461)
                      +.+.+++.+ ..++.+|..+  .+++++|+++++. +..++ ..+..+++|++|++++| .+..++... ..+++|++|+
T Consensus        17 ~~~~l~~~~-~~l~~ip~~~--~~~l~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n-~l~~i~~~~~~~l~~L~~L~   91 (270)
T 2o6q_A           17 NKNSVDCSS-KKLTAIPSNI--PADTKKLDLQSNK-LSSLPSKAFHRLTKLRLLYLNDN-KLQTLPAGIFKELKNLETLW   91 (270)
T ss_dssp             TTTEEECTT-SCCSSCCSCC--CTTCSEEECCSSC-CSCCCTTSSSSCTTCCEEECCSS-CCSCCCTTTTSSCTTCCEEE
T ss_pred             CCCEEEccC-CCCCccCCCC--CCCCCEEECcCCC-CCeeCHHHhcCCCCCCEEECCCC-ccCeeChhhhcCCCCCCEEE
Confidence            456676666 3455554333  2567777777653 43343 46677777777777776 445555433 4466777777


Q ss_pred             eccCccccccc-cccCCCCCccEEEecc-cCCCcCCC--CCCCCcceEEeecCchhhHHhhhhcccCCCCcCEEEEecCC
Q 045021          272 IYRCERLEALP-KGLHNLKSLKKLRIGG-KLPSLEED--GLPTNLHFLKIERNMEIWKSMIERGFHKFSSLRHLTIEGCD  347 (461)
Q Consensus       272 l~~c~~~~~~~-~~~~~l~~L~~L~l~~-~~~~l~~~--~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~  347 (461)
                      +++|. ++.++ ..+..+++|++|++++ .+..++..  ..+++|++|++++|. +. ..+...+..+++|++|++++| 
T Consensus        92 l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~-~~~~~~~~~l~~L~~L~L~~n-  167 (270)
T 2o6q_A           92 VTDNK-LQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNE-LQ-SLPKGVFDKLTSLKELRLYNN-  167 (270)
T ss_dssp             CCSSC-CCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CC-CCCTTTTTTCTTCCEEECCSS-
T ss_pred             CCCCc-CCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCc-CC-ccCHhHccCCcccceeEecCC-
Confidence            77653 33443 3456677777777766 55555432  345566666666664 22 122223455666666666665 


Q ss_pred             CcccccCccccccCCCCCCCCCcceeecCCCCCCccccc-chhhccCCcEEEecC
Q 045021          348 DDMVSFPPEDRRLGTTLPLPASLASLTIGDFPNLERLSS-SIVDLQNLKYLKLYD  401 (461)
Q Consensus       348 ~~~~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~-~~~~~~~L~~L~l~~  401 (461)
                       .+..++...+      ..+++|+.|+++++ .++.++. .+..+++|+.|++++
T Consensus       168 -~l~~~~~~~~------~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~  214 (270)
T 2o6q_A          168 -QLKRVPEGAF------DKLTELKTLKLDNN-QLKRVPEGAFDSLEKLKMLQLQE  214 (270)
T ss_dssp             -CCSCCCTTTT------TTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCS
T ss_pred             -cCcEeChhHh------ccCCCcCEEECCCC-cCCcCCHHHhccccCCCEEEecC
Confidence             5555554322      23456666666663 4555542 345566666666665

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.61  E-value=2.1e-14  Score=131.30  Aligned_cols=194  Identities=20%  Similarity=0.223  Sum_probs=107.4

Q ss_pred             CCccEEEecCCcCCccccccCCCCCCcCEEEecCCcCcccccC--CCCCCCccEEEEeecCCccccCcccccCCCCcccE
Q 045021           29 CRLEYLILRYCKGLVKLPQSSLSLSSLREIEICRCHSLVSFPE--VALPSKLKKIEIRECDALKSLPEAWMCGTNSSLEI  106 (461)
Q Consensus        29 ~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~--~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~  106 (461)
                      .+.+.+++++ .+++.+|..+.  ++|++|+++++ .+..++.  +..+++|++|+++++. ++.++...+.. +++|++
T Consensus        16 ~~~~~l~~~~-~~l~~ip~~~~--~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~-l~~i~~~~~~~-l~~L~~   89 (270)
T 2o6q_A           16 NNKNSVDCSS-KKLTAIPSNIP--ADTKKLDLQSN-KLSSLPSKAFHRLTKLRLLYLNDNK-LQTLPAGIFKE-LKNLET   89 (270)
T ss_dssp             TTTTEEECTT-SCCSSCCSCCC--TTCSEEECCSS-CCSCCCTTSSSSCTTCCEEECCSSC-CSCCCTTTTSS-CTTCCE
T ss_pred             CCCCEEEccC-CCCCccCCCCC--CCCCEEECcCC-CCCeeCHHHhcCCCCCCEEECCCCc-cCeeChhhhcC-CCCCCE
Confidence            4567888877 55677776554  67888888886 4566664  7778888888888865 66766654332 377778


Q ss_pred             EEeeCCCCCcccccc--CCCCCccEEecccCCCceEeccCCCcccccccccccCccEEEEecCCCCeecccCCCCcchhh
Q 045021          107 LKIWSCHSLPYIARV--QLPPSLKRLDISHCDNIRTLTVEDGIQSSSRRYTSYLLEKLEIWDCPSLTCIFSKNELPATLE  184 (461)
Q Consensus       107 L~l~~~~~l~~~~~~--~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~  184 (461)
                      |+++++ .++.++..  ..+++|++|+++++. +..++. ..+..      +++|+.|++++ +.++. ++..       
T Consensus        90 L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~-~~~~~------l~~L~~L~Ls~-n~l~~-~~~~-------  151 (270)
T 2o6q_A           90 LWVTDN-KLQALPIGVFDQLVNLAELRLDRNQ-LKSLPP-RVFDS------LTKLTYLSLGY-NELQS-LPKG-------  151 (270)
T ss_dssp             EECCSS-CCCCCCTTTTTTCSSCCEEECCSSC-CCCCCT-TTTTT------CTTCCEEECCS-SCCCC-CCTT-------
T ss_pred             EECCCC-cCCcCCHhHcccccCCCEEECCCCc-cCeeCH-HHhCc------CcCCCEEECCC-CcCCc-cCHh-------
Confidence            777774 34444432  345556666665543 222220 11111      33455555544 33333 2221       


Q ss_pred             hcccCCCCCCccEEEEecCCchhhhHHhhcCCCccceeeccccccceecc-cccCCCCCccEEEecCCCCCccCCC-CCC
Q 045021          185 SLEVGNQPPSLKSLNVWSCSKLESIAERLDNNTSLEMISILWCENLKFLP-SGLHNLRQLQEIQLWGCENLVSFPE-GGL  262 (461)
Q Consensus       185 ~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~l~~l~~-~~~  262 (461)
                                                 .+..+++|++|++++| .+..++ ..+..+++|+.|++++| .+..++. ...
T Consensus       152 ---------------------------~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~  202 (270)
T 2o6q_A          152 ---------------------------VFDKLTSLKELRLYNN-QLKRVPEGAFDKLTELKTLKLDNN-QLKRVPEGAFD  202 (270)
T ss_dssp             ---------------------------TTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTT
T ss_pred             ---------------------------HccCCcccceeEecCC-cCcEeChhHhccCCCcCEEECCCC-cCCcCCHHHhc
Confidence                                       3445555555555554 232232 34555666666666665 3444443 233


Q ss_pred             CCCCcceEeeccC
Q 045021          263 PCAKLSKLGIYRC  275 (461)
Q Consensus       263 ~~~~L~~L~l~~c  275 (461)
                      .+++|+.|++++|
T Consensus       203 ~l~~L~~L~l~~N  215 (270)
T 2o6q_A          203 SLEKLKMLQLQEN  215 (270)
T ss_dssp             TCTTCCEEECCSS
T ss_pred             cccCCCEEEecCC
Confidence            3556666666654

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.61  E-value=6.2e-15  Score=135.29  Aligned_cols=196  Identities=21%  Similarity=0.242  Sum_probs=136.6

Q ss_pred             Cccceeeccccccceecc-cccCCCCCccEEEecCCCCCccCCC-CCCCCCCcceEeeccCccccccccccCCCCCccEE
Q 045021          217 TSLEMISILWCENLKFLP-SGLHNLRQLQEIQLWGCENLVSFPE-GGLPCAKLSKLGIYRCERLEALPKGLHNLKSLKKL  294 (461)
Q Consensus       217 ~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~c~~~~~~~~~~~~l~~L~~L  294 (461)
                      ++|++|+++++ .+..++ ..+..+++|++|++++| .+..++. ....+++|++|++++|.-....+..+..+++|++|
T Consensus        28 ~~l~~L~ls~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  105 (276)
T 2z62_A           28 FSTKNLDLSFN-PLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL  105 (276)
T ss_dssp             TTCCEEECTTC-CCCEECTTTTTTCTTCSEEECTTC-CCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEE
T ss_pred             CCccEEECCCC-cccccCHhHhccccCCcEEECCCC-cCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEE
Confidence            57888998887 444444 47888889999999887 4555544 45567789999998865433334568888899999


Q ss_pred             Eecc-cCCCcCC--CCCCCCcceEEeecCchhhHHhhhhcccCCCCcCEEEEecCCCcccccCccccccCCCCCCCCCcc
Q 045021          295 RIGG-KLPSLEE--DGLPTNLHFLKIERNMEIWKSMIERGFHKFSSLRHLTIEGCDDDMVSFPPEDRRLGTTLPLPASLA  371 (461)
Q Consensus       295 ~l~~-~~~~l~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~i~~~~~~~~~~~~~~~~L~  371 (461)
                      ++++ .+..++.  ...+++|++|++++|. +........+..+++|++|++++|  .+..++...++      .+++|+
T Consensus       106 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~l~~~~~~l~~L~~L~Ls~N--~l~~~~~~~~~------~l~~L~  176 (276)
T 2z62_A          106 VAVETNLASLENFPIGHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSN--KIQSIYCTDLR------VLHQMP  176 (276)
T ss_dssp             ECTTSCCCCSTTCCCTTCTTCCEEECCSSC-CCCCCCCGGGGGCTTCCEEECCSS--CCCEECGGGGH------HHHTCT
T ss_pred             ECCCCCccccCchhcccCCCCCEEECcCCc-cceecCchhhccCCCCCEEECCCC--CCCcCCHHHhh------hhhhcc
Confidence            9888 6666554  3556789999998887 222111235677889999999887  67666554232      334455


Q ss_pred             ----eeecCCCCCCcccccchhhccCCcEEEecCCCCCcccCCCCC--cccccEeeccCC
Q 045021          372 ----SLTIGDFPNLERLSSSIVDLQNLKYLKLYDCPKLKYFSEKGL--PSSLLRLYIDEC  425 (461)
Q Consensus       372 ----~L~l~~~~~l~~i~~~~~~~~~L~~L~l~~C~~l~~~~~~~~--~~~L~~L~i~~c  425 (461)
                          +|++++ +.+..++.......+|++|++++ ++++.++...+  .++|++|+++++
T Consensus       177 ~l~l~L~ls~-n~l~~~~~~~~~~~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~l~~N  234 (276)
T 2z62_A          177 LLNLSLDLSL-NPMNFIQPGAFKEIRLKELALDT-NQLKSVPDGIFDRLTSLQKIWLHTN  234 (276)
T ss_dssp             TCCEEEECCS-SCCCEECTTSSCSCCEEEEECCS-SCCSCCCTTTTTTCCSCCEEECCSS
T ss_pred             ccceeeecCC-CcccccCccccCCCcccEEECCC-CceeecCHhHhcccccccEEEccCC
Confidence                788888 56777765555556889999988 66888776432  578888988843

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.60  E-value=4.5e-15  Score=138.62  Aligned_cols=223  Identities=13%  Similarity=0.053  Sum_probs=146.6

Q ss_pred             CccEEEEecCCchhh-hHH--hhcCCCccceeeccccccceeccccc--CCCCCccEEEecCCCCCccCCC----CCCCC
Q 045021          194 SLKSLNVWSCSKLES-IAE--RLDNNTSLEMISILWCENLKFLPSGL--HNLRQLQEIQLWGCENLVSFPE----GGLPC  264 (461)
Q Consensus       194 ~L~~L~l~~~~~l~~-~~~--~~~~l~~L~~L~l~~~~~~~~~~~~~--~~l~~L~~L~l~~~~~l~~l~~----~~~~~  264 (461)
                      .++.+.+.++..... +..  ....+++|++|++++|......|..+  ..+++|++|++++|......+.    ....+
T Consensus        65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~  144 (310)
T 4glp_A           65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK  144 (310)
T ss_dssp             CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred             ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence            366777766432211 111  12234679999998886555666666  7888999999998854332221    12246


Q ss_pred             CCcceEeeccCccccccccccCCCCCccEEEecc-cCCC---cCC---CCCCCCcceEEeecCchhh-HHhhhhcccCCC
Q 045021          265 AKLSKLGIYRCERLEALPKGLHNLKSLKKLRIGG-KLPS---LEE---DGLPTNLHFLKIERNMEIW-KSMIERGFHKFS  336 (461)
Q Consensus       265 ~~L~~L~l~~c~~~~~~~~~~~~l~~L~~L~l~~-~~~~---l~~---~~~~~~L~~L~l~~~~~l~-~~~~~~~~~~l~  336 (461)
                      ++|++|++++|.-....+..+..+++|++|++++ .+..   ++.   ...+++|++|++++|..-. .....+.+..++
T Consensus       145 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~  224 (310)
T 4glp_A          145 PGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGV  224 (310)
T ss_dssp             SCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTC
T ss_pred             cCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCC
Confidence            6899999988765444456788889999999988 4432   221   1456789999999887321 111122346788


Q ss_pred             CcCEEEEecCCCccccc-CccccccCCCCCCCCCcceeecCCCCCCcccccchhhccCCcEEEecCCCCCcccCCCCCcc
Q 045021          337 SLRHLTIEGCDDDMVSF-PPEDRRLGTTLPLPASLASLTIGDFPNLERLSSSIVDLQNLKYLKLYDCPKLKYFSEKGLPS  415 (461)
Q Consensus       337 ~L~~L~l~~~~~~~~~i-~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~L~~L~l~~C~~l~~~~~~~~~~  415 (461)
                      +|++|++++|  .+..+ |.. ++   ....+++|++|++++ +.++.+|..+.  ++|++|++++ ++++.+|....++
T Consensus       225 ~L~~L~Ls~N--~l~~~~p~~-~~---~~~~~~~L~~L~Ls~-N~l~~lp~~~~--~~L~~L~Ls~-N~l~~~~~~~~l~  294 (310)
T 4glp_A          225 QPHSLDLSHN--SLRATVNPS-AP---RCMWSSALNSLNLSF-AGLEQVPKGLP--AKLRVLDLSS-NRLNRAPQPDELP  294 (310)
T ss_dssp             CCSSEECTTS--CCCCCCCSC-CS---SCCCCTTCCCEECCS-SCCCSCCSCCC--SCCSCEECCS-CCCCSCCCTTSCC
T ss_pred             CCCEEECCCC--CCCccchhh-HH---hccCcCcCCEEECCC-CCCCchhhhhc--CCCCEEECCC-CcCCCCchhhhCC
Confidence            9999999987  66655 433 21   001236899999988 47778876553  7899999988 7888776644468


Q ss_pred             cccEeeccCCc
Q 045021          416 SLLRLYIDECP  426 (461)
Q Consensus       416 ~L~~L~i~~c~  426 (461)
                      +|++|++++++
T Consensus       295 ~L~~L~L~~N~  305 (310)
T 4glp_A          295 EVDNLTLDGNP  305 (310)
T ss_dssp             CCSCEECSSTT
T ss_pred             CccEEECcCCC
Confidence            88888888875

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.60  E-value=5.1e-15  Score=138.00  Aligned_cols=193  Identities=16%  Similarity=0.193  Sum_probs=133.9

Q ss_pred             ccCccEEEEecCCCCeecccCCCCcchhhhcccCCCCCCccEEEEecCCchhhhHHhhcCCCccceeeccccccceeccc
Q 045021          156 SYLLEKLEIWDCPSLTCIFSKNELPATLESLEVGNQPPSLKSLNVWSCSKLESIAERLDNNTSLEMISILWCENLKFLPS  235 (461)
Q Consensus       156 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~  235 (461)
                      +++|+.|++++ ..++. ++.  +..          +++|+.|+++++ .+..++. +..+++|++|++++|. +..++ 
T Consensus        40 l~~L~~L~l~~-~~i~~-l~~--~~~----------l~~L~~L~L~~n-~i~~~~~-~~~l~~L~~L~L~~n~-l~~~~-  101 (308)
T 1h6u_A           40 LDGITTLSAFG-TGVTT-IEG--VQY----------LNNLIGLELKDN-QITDLAP-LKNLTKITELELSGNP-LKNVS-  101 (308)
T ss_dssp             HHTCCEEECTT-SCCCC-CTT--GGG----------CTTCCEEECCSS-CCCCCGG-GTTCCSCCEEECCSCC-CSCCG-
T ss_pred             cCCcCEEEeeC-CCccC-chh--hhc----------cCCCCEEEccCC-cCCCChh-HccCCCCCEEEccCCc-CCCch-
Confidence            56788888888 46655 331  222          267888888885 4444544 7788888888888764 55544 


Q ss_pred             ccCCCCCccEEEecCCCCCccCCCCCCCCCCcceEeeccCccccccccccCCCCCccEEEecc-cCCCcCCCCCCCCcce
Q 045021          236 GLHNLRQLQEIQLWGCENLVSFPEGGLPCAKLSKLGIYRCERLEALPKGLHNLKSLKKLRIGG-KLPSLEEDGLPTNLHF  314 (461)
Q Consensus       236 ~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~l~~L~~L~l~~-~~~~l~~~~~~~~L~~  314 (461)
                      .+..+++|+.|++++| .+..++. ...+++|++|++++| .++.++. +..+++|++|++++ .+..++....+++|++
T Consensus       102 ~~~~l~~L~~L~l~~n-~l~~~~~-l~~l~~L~~L~l~~n-~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~  177 (308)
T 1h6u_A          102 AIAGLQSIKTLDLTST-QITDVTP-LAGLSNLQVLYLDLN-QITNISP-LAGLTNLQYLSIGNAQVSDLTPLANLSKLTT  177 (308)
T ss_dssp             GGTTCTTCCEEECTTS-CCCCCGG-GTTCTTCCEEECCSS-CCCCCGG-GGGCTTCCEEECCSSCCCCCGGGTTCTTCCE
T ss_pred             hhcCCCCCCEEECCCC-CCCCchh-hcCCCCCCEEECCCC-ccCcCcc-ccCCCCccEEEccCCcCCCChhhcCCCCCCE
Confidence            5777888888888887 4555543 445678888888885 4555554 77888888888888 6766666666778888


Q ss_pred             EEeecCchhhHHhhhhcccCCCCcCEEEEecCCCcccccCccccccCCCCCCCCCcceeecCCCCCCcccc
Q 045021          315 LKIERNMEIWKSMIERGFHKFSSLRHLTIEGCDDDMVSFPPEDRRLGTTLPLPASLASLTIGDFPNLERLS  385 (461)
Q Consensus       315 L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~  385 (461)
                      |++++|. +....   .+..+++|++|++++|  .+..++.  +      ..+++|+.|+++++ .+...+
T Consensus       178 L~l~~n~-l~~~~---~l~~l~~L~~L~L~~N--~l~~~~~--l------~~l~~L~~L~l~~N-~i~~~~  233 (308)
T 1h6u_A          178 LKADDNK-ISDIS---PLASLPNLIEVHLKNN--QISDVSP--L------ANTSNLFIVTLTNQ-TITNQP  233 (308)
T ss_dssp             EECCSSC-CCCCG---GGGGCTTCCEEECTTS--CCCBCGG--G------TTCTTCCEEEEEEE-EEECCC
T ss_pred             EECCCCc-cCcCh---hhcCCCCCCEEEccCC--ccCcccc--c------cCCCCCCEEEccCC-eeecCC
Confidence            8888886 33222   2677888888888887  6666654  3      36678888888884 555554

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.59  E-value=2.5e-14  Score=132.07  Aligned_cols=75  Identities=15%  Similarity=0.149  Sum_probs=39.6

Q ss_pred             CCccEEEecCCcCCccccccCCCCCCcCEEEecCCcCcccccC--CCCCCCccEEEEeecCCccccCcccccCCCCcccE
Q 045021           29 CRLEYLILRYCKGLVKLPQSSLSLSSLREIEICRCHSLVSFPE--VALPSKLKKIEIRECDALKSLPEAWMCGTNSSLEI  106 (461)
Q Consensus        29 ~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~--~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~  106 (461)
                      ++++++++++ .++..+|..+.  +++++|++++| .+..++.  +..+++|++|+++++. +..++.. .  .+++|+.
T Consensus        10 ~~l~~l~~~~-~~l~~ip~~~~--~~l~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~-~--~l~~L~~   81 (290)
T 1p9a_G           10 ASHLEVNCDK-RNLTALPPDLP--KDTTILHLSEN-LLYTFSLATLMPYTRLTQLNLDRAE-LTKLQVD-G--TLPVLGT   81 (290)
T ss_dssp             TTCCEEECTT-SCCSSCCSCCC--TTCCEEECTTS-CCSEEEGGGGTTCTTCCEEECTTSC-CCEEECC-S--CCTTCCE
T ss_pred             CCccEEECCC-CCCCcCCCCCC--CCCCEEEcCCC-cCCccCHHHhhcCCCCCEEECCCCc-cCcccCC-C--CCCcCCE
Confidence            6666666666 44556665443  56666666665 3343332  5556666666666643 4444332 1  1244455


Q ss_pred             EEeeC
Q 045021          107 LKIWS  111 (461)
Q Consensus       107 L~l~~  111 (461)
                      |++++
T Consensus        82 L~Ls~   86 (290)
T 1p9a_G           82 LDLSH   86 (290)
T ss_dssp             EECCS
T ss_pred             EECCC
Confidence            44444

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.58  E-value=2.1e-16  Score=149.47  Aligned_cols=226  Identities=13%  Similarity=0.122  Sum_probs=121.0

Q ss_pred             cCccEEEEecCCCCeecccCCCCcchhhhcccCCCCCCccEEEEecCCchhh-hHHhhcCCCccceeeccccccceeccc
Q 045021          157 YLLEKLEIWDCPSLTCIFSKNELPATLESLEVGNQPPSLKSLNVWSCSKLES-IAERLDNNTSLEMISILWCENLKFLPS  235 (461)
Q Consensus       157 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~  235 (461)
                      ++++.+++.+ +.+.. .....+ .          +++|++|+++++..... ++..+..+++|++|++++|......+.
T Consensus        70 ~~l~~L~l~~-n~l~~-~~~~~~-~----------~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~  136 (336)
T 2ast_B           70 QGVIAFRCPR-SFMDQ-PLAEHF-S----------PFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVN  136 (336)
T ss_dssp             TTCSEEECTT-CEECS-CCCSCC-C----------CBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHH
T ss_pred             ccceEEEcCC-ccccc-cchhhc-c----------CCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHH
Confidence            5778888777 55444 111111 1          25677777777642222 555667777777777777643334455


Q ss_pred             ccCCCCCccEEEecCCCCCcc--CCCCCCCCCCcceEeeccCccccc--cccccCCCCCccEEEecccCCCcCCCCCCCC
Q 045021          236 GLHNLRQLQEIQLWGCENLVS--FPEGGLPCAKLSKLGIYRCERLEA--LPKGLHNLKSLKKLRIGGKLPSLEEDGLPTN  311 (461)
Q Consensus       236 ~~~~l~~L~~L~l~~~~~l~~--l~~~~~~~~~L~~L~l~~c~~~~~--~~~~~~~l~~L~~L~l~~~~~~l~~~~~~~~  311 (461)
                      .++.+++|++|++++|..+..  ++.....+++|++|++++|..++.  ++..+..++                    ++
T Consensus       137 ~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~--------------------~~  196 (336)
T 2ast_B          137 TLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVS--------------------ET  196 (336)
T ss_dssp             HHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSC--------------------TT
T ss_pred             HHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcc--------------------cC
Confidence            566667777777777643332  222233345666666666533332  233333343                    15


Q ss_pred             cceEEeecCc-hhhHHhhhhcccCCCCcCEEEEecCCCccc-ccCccccccCCCCCCCCCcceeecCCCCCCccc-ccch
Q 045021          312 LHFLKIERNM-EIWKSMIERGFHKFSSLRHLTIEGCDDDMV-SFPPEDRRLGTTLPLPASLASLTIGDFPNLERL-SSSI  388 (461)
Q Consensus       312 L~~L~l~~~~-~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i-~~~~  388 (461)
                      |++|++++|. .+++......+..+++|++|++++| ..+. ..+.. ++      ..++|++|++++|..+... ...+
T Consensus       197 L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~-~~l~~~~~~~-l~------~l~~L~~L~l~~~~~~~~~~~~~l  268 (336)
T 2ast_B          197 ITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDS-VMLKNDCFQE-FF------QLNYLQHLSLSRCYDIIPETLLEL  268 (336)
T ss_dssp             CCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTC-TTCCGGGGGG-GG------GCTTCCEEECTTCTTCCGGGGGGG
T ss_pred             CCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCC-CcCCHHHHHH-Hh------CCCCCCEeeCCCCCCCCHHHHHHH
Confidence            5666666664 2332222224556777888888776 2132 22222 32      4467888888877543221 1346


Q ss_pred             hhccCCcEEEecCCCCCcccCCCCCcccccEeeccCC
Q 045021          389 VDLQNLKYLKLYDCPKLKYFSEKGLPSSLLRLYIDEC  425 (461)
Q Consensus       389 ~~~~~L~~L~l~~C~~l~~~~~~~~~~~L~~L~i~~c  425 (461)
                      ..+++|+.|++++|  ++.-....+...++.|++++|
T Consensus       269 ~~~~~L~~L~l~~~--i~~~~~~~l~~~l~~L~l~~n  303 (336)
T 2ast_B          269 GEIPTLKTLQVFGI--VPDGTLQLLKEALPHLQINCS  303 (336)
T ss_dssp             GGCTTCCEEECTTS--SCTTCHHHHHHHSTTSEESCC
T ss_pred             hcCCCCCEEeccCc--cCHHHHHHHHhhCcceEEecc
Confidence            67778888888876  222111112245677777544

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.58  E-value=4.5e-16  Score=147.23  Aligned_cols=220  Identities=14%  Similarity=0.118  Sum_probs=152.5

Q ss_pred             ccEEEEecCCchhhhHHhhcCC--CccceeeccccccceecccccCCCCCccEEEecCCCCCcc-CCCCCCCCCCcceEe
Q 045021          195 LKSLNVWSCSKLESIAERLDNN--TSLEMISILWCENLKFLPSGLHNLRQLQEIQLWGCENLVS-FPEGGLPCAKLSKLG  271 (461)
Q Consensus       195 L~~L~l~~~~~l~~~~~~~~~l--~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~-l~~~~~~~~~L~~L~  271 (461)
                      ++.+++.++...   +..+..+  ++++.|++.++. +...+..+..+++|++|++++|..... ++.....+++|++|+
T Consensus        49 ~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~-l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~  124 (336)
T 2ast_B           49 WQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSF-MDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLS  124 (336)
T ss_dssp             SSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCE-ECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEE
T ss_pred             heeeccccccCC---HHHHHhhhhccceEEEcCCcc-ccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEe
Confidence            677777764322   2334444  688888888763 433344466788999999998742212 444455677899999


Q ss_pred             eccCccccccccccCCCCCccEEEecc--cCCC--cCC-CCCCCCcceEEeecCchhhHHhhhhcccCCC-CcCEEEEec
Q 045021          272 IYRCERLEALPKGLHNLKSLKKLRIGG--KLPS--LEE-DGLPTNLHFLKIERNMEIWKSMIERGFHKFS-SLRHLTIEG  345 (461)
Q Consensus       272 l~~c~~~~~~~~~~~~l~~L~~L~l~~--~~~~--l~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~-~L~~L~l~~  345 (461)
                      +++|......+..+..+++|++|++++  .+..  ++. ...+++|++|++++|..+++......+..++ +|++|++++
T Consensus       125 L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~  204 (336)
T 2ast_B          125 LEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSG  204 (336)
T ss_dssp             CTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCS
T ss_pred             CcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCC
Confidence            998854445566788899999999988  3432  333 2456799999999995566543344577899 999999999


Q ss_pred             CCCcc--cccCccccccCCCCCCCCCcceeecCCCCCCc-ccccchhhccCCcEEEecCCCCCcccCCC--CCcccccEe
Q 045021          346 CDDDM--VSFPPEDRRLGTTLPLPASLASLTIGDFPNLE-RLSSSIVDLQNLKYLKLYDCPKLKYFSEK--GLPSSLLRL  420 (461)
Q Consensus       346 ~~~~~--~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~-~i~~~~~~~~~L~~L~l~~C~~l~~~~~~--~~~~~L~~L  420 (461)
                      |...+  ..++.. +      ..+++|++|++++|..++ ..+..+..+++|++|++++|..+......  ...++|++|
T Consensus       205 ~~~~~~~~~l~~~-~------~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L  277 (336)
T 2ast_B          205 YRKNLQKSDLSTL-V------RRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTL  277 (336)
T ss_dssp             CGGGSCHHHHHHH-H------HHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEE
T ss_pred             CcccCCHHHHHHH-H------hhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEE
Confidence            81122  334443 2      256799999999986554 44567889999999999998765543221  226899999


Q ss_pred             eccCC
Q 045021          421 YIDEC  425 (461)
Q Consensus       421 ~i~~c  425 (461)
                      ++++|
T Consensus       278 ~l~~~  282 (336)
T 2ast_B          278 QVFGI  282 (336)
T ss_dssp             ECTTS
T ss_pred             eccCc
Confidence            99999

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.58  E-value=1.4e-14  Score=132.63  Aligned_cols=205  Identities=14%  Similarity=0.106  Sum_probs=110.3

Q ss_pred             CCccEEEecCCcCCccccccCCCCCCcCEEEecCCcCcccccCCCCCCCccEEEEeecCCccccCcccccCCCCcccEEE
Q 045021           29 CRLEYLILRYCKGLVKLPQSSLSLSSLREIEICRCHSLVSFPEVALPSKLKKIEIRECDALKSLPEAWMCGTNSSLEILK  108 (461)
Q Consensus        29 ~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~  108 (461)
                      ++|++|+++++. +..++. +..+++|++|++++| .+..++.+..+++|++|++++|. ++.++...+.. +++|++|+
T Consensus        41 ~~L~~L~l~~~~-i~~~~~-l~~l~~L~~L~l~~n-~l~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~~~~-l~~L~~L~  115 (272)
T 3rfs_A           41 NSIDQIIANNSD-IKSVQG-IQYLPNVRYLALGGN-KLHDISALKELTNLTYLILTGNQ-LQSLPNGVFDK-LTNLKELV  115 (272)
T ss_dssp             TTCCEEECTTSC-CCCCTT-GGGCTTCCEEECTTS-CCCCCGGGTTCTTCCEEECTTSC-CCCCCTTTTTT-CTTCCEEE
T ss_pred             cceeeeeeCCCC-cccccc-cccCCCCcEEECCCC-CCCCchhhcCCCCCCEEECCCCc-cCccChhHhcC-CcCCCEEE
Confidence            666666666632 344443 556666666666665 34445445666666666666654 44444432211 25555555


Q ss_pred             eeCCCCCccccc--cCCCCCccEEecccCCCceEeccCCCcccccccccccCccEEEEecCCCCeecccCCCCcchhhhc
Q 045021          109 IWSCHSLPYIAR--VQLPPSLKRLDISHCDNIRTLTVEDGIQSSSRRYTSYLLEKLEIWDCPSLTCIFSKNELPATLESL  186 (461)
Q Consensus       109 l~~~~~l~~~~~--~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~  186 (461)
                      ++++ .++.++.  ...++                                +|+.|++++ +.++. ++...+...    
T Consensus       116 L~~n-~l~~~~~~~~~~l~--------------------------------~L~~L~L~~-n~l~~-~~~~~~~~l----  156 (272)
T 3rfs_A          116 LVEN-QLQSLPDGVFDKLT--------------------------------NLTYLNLAH-NQLQS-LPKGVFDKL----  156 (272)
T ss_dssp             CTTS-CCCCCCTTTTTTCT--------------------------------TCCEEECCS-SCCCC-CCTTTTTTC----
T ss_pred             CCCC-cCCccCHHHhccCC--------------------------------CCCEEECCC-CccCc-cCHHHhccC----
Confidence            5553 2333222  12333                                455555555 34443 222222111    


Q ss_pred             ccCCCCCCccEEEEecCCchhhhHHhhcCCCccceeeccccccceecccccCCCCCccEEEecCCCCCccCCCCCCCCCC
Q 045021          187 EVGNQPPSLKSLNVWSCSKLESIAERLDNNTSLEMISILWCENLKFLPSGLHNLRQLQEIQLWGCENLVSFPEGGLPCAK  266 (461)
Q Consensus       187 ~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~  266 (461)
                            ++|+.|++.++......+..+..+++|++|++++|......+..+..+++|+.|++++|+..       +.+++
T Consensus       157 ------~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~-------~~~~~  223 (272)
T 3rfs_A          157 ------TNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD-------CTCPG  223 (272)
T ss_dssp             ------TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC-------CCTTT
T ss_pred             ------ccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcc-------ccCcH
Confidence                  45666666664222222234566778888888776433333445677888888888887432       23557


Q ss_pred             cceEeeccCccccccccccCCCCC
Q 045021          267 LSKLGIYRCERLEALPKGLHNLKS  290 (461)
Q Consensus       267 L~~L~l~~c~~~~~~~~~~~~l~~  290 (461)
                      ++.+++..+.....+|..++.++.
T Consensus       224 l~~l~~~~n~~~g~ip~~~~~~~~  247 (272)
T 3rfs_A          224 IRYLSEWINKHSGVVRNSAGSVAP  247 (272)
T ss_dssp             THHHHHHHHHTGGGBBCTTSCBCG
T ss_pred             HHHHHHHHHhCCCcccCcccccCC
Confidence            788877776555566666665543

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.55  E-value=2.6e-14  Score=130.75  Aligned_cols=182  Identities=19%  Similarity=0.223  Sum_probs=124.5

Q ss_pred             hhhhhhhcCCccEEEecCCcCCccccccCCCCCCcCEEEecCCcCcccccC--CCCCCCccEEEEeecCCccccCccccc
Q 045021           21 QQQLCELSCRLEYLILRYCKGLVKLPQSSLSLSSLREIEICRCHSLVSFPE--VALPSKLKKIEIRECDALKSLPEAWMC   98 (461)
Q Consensus        21 l~~l~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~--~~~l~~L~~L~l~~~~~l~~~~~~~~~   98 (461)
                      +..+    ++|++|+++++. +..++ .+..+++|++|++++| .+..++.  ++.+++|++|++++|. +..++...+.
T Consensus        59 l~~l----~~L~~L~l~~n~-l~~~~-~l~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~  130 (272)
T 3rfs_A           59 IQYL----PNVRYLALGGNK-LHDIS-ALKELTNLTYLILTGN-QLQSLPNGVFDKLTNLKELVLVENQ-LQSLPDGVFD  130 (272)
T ss_dssp             GGGC----TTCCEEECTTSC-CCCCG-GGTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTSC-CCCCCTTTTT
T ss_pred             cccC----CCCcEEECCCCC-CCCch-hhcCCCCCCEEECCCC-ccCccChhHhcCCcCCCEEECCCCc-CCccCHHHhc
Confidence            5666    999999999954 56665 5889999999999997 5677766  7889999999999976 7777765432


Q ss_pred             CCCCcccEEEeeCCCCCcccccc--CCCCCccEEecccCCCceEeccCCC-cccccccccccCccEEEEecCCCCeeccc
Q 045021           99 GTNSSLEILKIWSCHSLPYIARV--QLPPSLKRLDISHCDNIRTLTVEDG-IQSSSRRYTSYLLEKLEIWDCPSLTCIFS  175 (461)
Q Consensus        99 ~~~~~L~~L~l~~~~~l~~~~~~--~~~~~L~~L~l~~~~~~~~l~~~~~-~~~~~~~~~~~~L~~L~l~~~~~l~~~~~  175 (461)
                      . +++|+.|+++++ .++.++..  ..+++|++|+++++. +..++  .. +..      +++|+.|++++ +.++. ++
T Consensus       131 ~-l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~--~~~~~~------l~~L~~L~L~~-N~l~~-~~  197 (272)
T 3rfs_A          131 K-LTNLTYLNLAHN-QLQSLPKGVFDKLTNLTELDLSYNQ-LQSLP--EGVFDK------LTQLKDLRLYQ-NQLKS-VP  197 (272)
T ss_dssp             T-CTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CCCCC--TTTTTT------CTTCCEEECCS-SCCSC-CC
T ss_pred             c-CCCCCEEECCCC-ccCccCHHHhccCccCCEEECCCCC-cCccC--HHHhcC------CccCCEEECCC-CcCCc-cC
Confidence            2 389999999996 66666553  567889999998875 44444  32 232      45788888877 56655 33


Q ss_pred             CCCCcchhhhcccCCCCCCccEEEEecCCchhhhHHhhcCCCccceeeccccccceecccccCCC
Q 045021          176 KNELPATLESLEVGNQPPSLKSLNVWSCSKLESIAERLDNNTSLEMISILWCENLKFLPSGLHNL  240 (461)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l  240 (461)
                      ...+...          ++|+.|++.++..       .+.+++|+.+++..+...+.+|.+++.+
T Consensus       198 ~~~~~~l----------~~L~~L~l~~N~~-------~~~~~~l~~l~~~~n~~~g~ip~~~~~~  245 (272)
T 3rfs_A          198 DGVFDRL----------TSLQYIWLHDNPW-------DCTCPGIRYLSEWINKHSGVVRNSAGSV  245 (272)
T ss_dssp             TTTTTTC----------TTCCEEECCSSCB-------CCCTTTTHHHHHHHHHTGGGBBCTTSCB
T ss_pred             HHHHhCC----------cCCCEEEccCCCc-------cccCcHHHHHHHHHHhCCCcccCccccc
Confidence            3333222          5677777766422       1335566666666554444555555443

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.54  E-value=7.7e-15  Score=137.05  Aligned_cols=204  Identities=17%  Similarity=0.127  Sum_probs=110.4

Q ss_pred             ccCccEEEEecCCCCeecccCCCC-cchhhhcccCCCCCCccEEEEecCCchhhhH----HhhcCCCccceeeccccccc
Q 045021          156 SYLLEKLEIWDCPSLTCIFSKNEL-PATLESLEVGNQPPSLKSLNVWSCSKLESIA----ERLDNNTSLEMISILWCENL  230 (461)
Q Consensus       156 ~~~L~~L~l~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~----~~~~~l~~L~~L~l~~~~~~  230 (461)
                      .++|++|++++ +.+....+...+ ...          ++|++|+++++......+    ..+..+++|++|++++|...
T Consensus        90 ~~~L~~L~l~~-n~l~~~~~~~~~~~~~----------~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~  158 (310)
T 4glp_A           90 YSRLKELTLED-LKITGTMPPLPLEATG----------LALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSP  158 (310)
T ss_dssp             HSCCCEEEEES-CCCBSCCCCCSSSCCC----------BCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSC
T ss_pred             cCceeEEEeeC-CEeccchhhhhhhccC----------CCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcc
Confidence            45677777777 455431222211 111          457777776653322111    13345666666666665433


Q ss_pred             eecccccCCCCCccEEEecCCCCCcc--CC--CCCCCCCCcceEeeccCcccccccc----ccCCCCCccEEEecccCCC
Q 045021          231 KFLPSGLHNLRQLQEIQLWGCENLVS--FP--EGGLPCAKLSKLGIYRCERLEALPK----GLHNLKSLKKLRIGGKLPS  302 (461)
Q Consensus       231 ~~~~~~~~~l~~L~~L~l~~~~~l~~--l~--~~~~~~~~L~~L~l~~c~~~~~~~~----~~~~l~~L~~L~l~~~~~~  302 (461)
                      ...+..+..+++|++|++++|.....  ++  .....+++|++|++++|. ++.++.    .+..+++|           
T Consensus       159 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~~l~~L-----------  226 (310)
T 4glp_A          159 AFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTG-METPTGVCAALAAAGVQP-----------  226 (310)
T ss_dssp             CCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSC-CCCHHHHHHHHHHHTCCC-----------
T ss_pred             hhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCC-CCchHHHHHHHHhcCCCC-----------
Confidence            33345556666666666666532211  11  111234456666666542 332222    12344444           


Q ss_pred             cCCCCCCCCcceEEeecCchhhHHhhh--hcccCCCCcCEEEEecCCCcccccCccccccCCCCCCCCCcceeecCCCCC
Q 045021          303 LEEDGLPTNLHFLKIERNMEIWKSMIE--RGFHKFSSLRHLTIEGCDDDMVSFPPEDRRLGTTLPLPASLASLTIGDFPN  380 (461)
Q Consensus       303 l~~~~~~~~L~~L~l~~~~~l~~~~~~--~~~~~l~~L~~L~l~~~~~~~~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~  380 (461)
                                ++|++++|. +....+.  ..+..+++|++|++++|  ++..+|..         .+++|++|++++ +.
T Consensus       227 ----------~~L~Ls~N~-l~~~~p~~~~~~~~~~~L~~L~Ls~N--~l~~lp~~---------~~~~L~~L~Ls~-N~  283 (310)
T 4glp_A          227 ----------HSLDLSHNS-LRATVNPSAPRCMWSSALNSLNLSFA--GLEQVPKG---------LPAKLRVLDLSS-NR  283 (310)
T ss_dssp             ----------SSEECTTSC-CCCCCCSCCSSCCCCTTCCCEECCSS--CCCSCCSC---------CCSCCSCEECCS-CC
T ss_pred             ----------CEEECCCCC-CCccchhhHHhccCcCcCCEEECCCC--CCCchhhh---------hcCCCCEEECCC-Cc
Confidence                      455555544 2111110  11223468888888887  77777775         347899999988 57


Q ss_pred             CcccccchhhccCCcEEEecCCCCCcc
Q 045021          381 LERLSSSIVDLQNLKYLKLYDCPKLKY  407 (461)
Q Consensus       381 l~~i~~~~~~~~~L~~L~l~~C~~l~~  407 (461)
                      ++.+|. +..+++|+.|++++ +.++.
T Consensus       284 l~~~~~-~~~l~~L~~L~L~~-N~l~~  308 (310)
T 4glp_A          284 LNRAPQ-PDELPEVDNLTLDG-NPFLV  308 (310)
T ss_dssp             CCSCCC-TTSCCCCSCEECSS-TTTSC
T ss_pred             CCCCch-hhhCCCccEEECcC-CCCCC
Confidence            777753 67788999999988 66653

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.48  E-value=5.8e-13  Score=120.25  Aligned_cols=169  Identities=18%  Similarity=0.235  Sum_probs=89.6

Q ss_pred             ccceeeccccccceecccccCCCCCccEEEecCCCCCccCCC-CCCCCCCcceEeeccCccccccccccCCCCCccEEEe
Q 045021          218 SLEMISILWCENLKFLPSGLHNLRQLQEIQLWGCENLVSFPE-GGLPCAKLSKLGIYRCERLEALPKGLHNLKSLKKLRI  296 (461)
Q Consensus       218 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~c~~~~~~~~~~~~l~~L~~L~l  296 (461)
                      +.++++++++ .+..+|..+.  ++++.|++++|. +..++. ....+++|++|++++|..-...+..+..+++|++|++
T Consensus        15 ~~~~l~~~~~-~l~~~p~~~~--~~l~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L   90 (251)
T 3m19_A           15 GKKEVDCQGK-SLDSVPSGIP--ADTEKLDLQSTG-LATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL   90 (251)
T ss_dssp             GGTEEECTTC-CCSSCCSCCC--TTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCeEEecCCC-CccccCCCCC--CCCCEEEccCCC-cCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence            4455666553 4555555443  567777777663 333333 3444567777777765332323334566677777777


Q ss_pred             cc-cCCCcCCC--CCCCCcceEEeecCchhhHHhhhhcccCCCCcCEEEEecCCCcccccCccccccCCCCCCCCCccee
Q 045021          297 GG-KLPSLEED--GLPTNLHFLKIERNMEIWKSMIERGFHKFSSLRHLTIEGCDDDMVSFPPEDRRLGTTLPLPASLASL  373 (461)
Q Consensus       297 ~~-~~~~l~~~--~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~i~~~~~~~~~~~~~~~~L~~L  373 (461)
                      ++ .+..++..  ..+++|++|++++|. ++ ..+...+..+++|++|++++|  .+..++...+      ..+++|+.|
T Consensus        91 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~-~~~~~~~~~l~~L~~L~Ls~N--~l~~~~~~~~------~~l~~L~~L  160 (251)
T 3m19_A           91 ANNQLASLPLGVFDHLTQLDKLYLGGNQ-LK-SLPSGVFDRLTKLKELRLNTN--QLQSIPAGAF------DKLTNLQTL  160 (251)
T ss_dssp             TTSCCCCCCTTTTTTCTTCCEEECCSSC-CC-CCCTTTTTTCTTCCEEECCSS--CCCCCCTTTT------TTCTTCCEE
T ss_pred             CCCcccccChhHhcccCCCCEEEcCCCc-CC-CcChhHhccCCcccEEECcCC--cCCccCHHHc------CcCcCCCEE
Confidence            66 55555432  344566666666654 22 122223455566666666655  5555544323      234556666


Q ss_pred             ecCCCCCCcccc-cchhhccCCcEEEecC
Q 045021          374 TIGDFPNLERLS-SSIVDLQNLKYLKLYD  401 (461)
Q Consensus       374 ~l~~~~~l~~i~-~~~~~~~~L~~L~l~~  401 (461)
                      ++++ +.+..++ ..+..+++|+.|++.+
T Consensus       161 ~L~~-N~l~~~~~~~~~~l~~L~~L~l~~  188 (251)
T 3m19_A          161 SLST-NQLQSVPHGAFDRLGKLQTITLFG  188 (251)
T ss_dssp             ECCS-SCCSCCCTTTTTTCTTCCEEECCS
T ss_pred             ECCC-CcCCccCHHHHhCCCCCCEEEeeC
Confidence            6665 3444444 2445555666666655

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.45  E-value=1.4e-12  Score=117.66  Aligned_cols=168  Identities=21%  Similarity=0.252  Sum_probs=85.8

Q ss_pred             ccEEEEecCCchhhhHHhhcCCCccceeeccccccceecccccCCCCCccEEEecCCCCCccCCC-CCCCCCCcceEeec
Q 045021          195 LKSLNVWSCSKLESIAERLDNNTSLEMISILWCENLKFLPSGLHNLRQLQEIQLWGCENLVSFPE-GGLPCAKLSKLGIY  273 (461)
Q Consensus       195 L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~  273 (461)
                      .+.++..+ ..+..+|..+.  +++++|+++++......+..+..+++|++|++++| .+..++. ....+++|++|+++
T Consensus        16 ~~~l~~~~-~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~   91 (251)
T 3m19_A           16 KKEVDCQG-KSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYN-QLQTLSAGVFDDLTELGTLGLA   91 (251)
T ss_dssp             GTEEECTT-CCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECT
T ss_pred             CeEEecCC-CCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCC-cCCccCHhHhccCCcCCEEECC
Confidence            45555554 34444443222  45666666655332333345556666666666665 3333332 23445566666666


Q ss_pred             cCcccccc-ccccCCCCCccEEEecc-cCCCcCCC--CCCCCcceEEeecCchhhHHhhhhcccCCCCcCEEEEecCCCc
Q 045021          274 RCERLEAL-PKGLHNLKSLKKLRIGG-KLPSLEED--GLPTNLHFLKIERNMEIWKSMIERGFHKFSSLRHLTIEGCDDD  349 (461)
Q Consensus       274 ~c~~~~~~-~~~~~~l~~L~~L~l~~-~~~~l~~~--~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~  349 (461)
                      +|. ++.+ +..+..+++|++|++++ .+..++..  ..+++|++|++++|. +. ..+...+..+++|++|++++|  .
T Consensus        92 ~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~-~~~~~~~~~l~~L~~L~L~~N--~  166 (251)
T 3m19_A           92 NNQ-LASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQ-LQ-SIPAGAFDKLTNLQTLSLSTN--Q  166 (251)
T ss_dssp             TSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CC-CCCTTTTTTCTTCCEEECCSS--C
T ss_pred             CCc-ccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCc-CC-ccCHHHcCcCcCCCEEECCCC--c
Confidence            643 3333 23455666666666666 55555443  334566666666664 22 122223455666666666665  5


Q ss_pred             ccccCccccccCCCCCCCCCcceeecCC
Q 045021          350 MVSFPPEDRRLGTTLPLPASLASLTIGD  377 (461)
Q Consensus       350 ~~~i~~~~~~~~~~~~~~~~L~~L~l~~  377 (461)
                      +..++...+      ..+++|+.|++++
T Consensus       167 l~~~~~~~~------~~l~~L~~L~l~~  188 (251)
T 3m19_A          167 LQSVPHGAF------DRLGKLQTITLFG  188 (251)
T ss_dssp             CSCCCTTTT------TTCTTCCEEECCS
T ss_pred             CCccCHHHH------hCCCCCCEEEeeC
Confidence            555544323      2445666666666

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.45  E-value=3.2e-13  Score=124.69  Aligned_cols=173  Identities=19%  Similarity=0.232  Sum_probs=114.7

Q ss_pred             CCCccceeeccccccceecccccCCCCCccEEEecCCCCCccCCCCCCCCCCcceEeeccCccccccccccCCCCCccEE
Q 045021          215 NNTSLEMISILWCENLKFLPSGLHNLRQLQEIQLWGCENLVSFPEGGLPCAKLSKLGIYRCERLEALPKGLHNLKSLKKL  294 (461)
Q Consensus       215 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~l~~L~~L  294 (461)
                      .+++|++|++++| .+..++ .+..+++|+.|++++| .+..++. ...+++|++|++++| .++.++. +..+++|++|
T Consensus        44 ~l~~L~~L~l~~~-~i~~~~-~~~~l~~L~~L~L~~n-~l~~~~~-l~~l~~L~~L~l~~n-~l~~~~~-l~~l~~L~~L  117 (291)
T 1h6t_A           44 ELNSIDQIIANNS-DIKSVQ-GIQYLPNVTKLFLNGN-KLTDIKP-LANLKNLGWLFLDEN-KVKDLSS-LKDLKKLKSL  117 (291)
T ss_dssp             HHHTCCEEECTTS-CCCCCT-TGGGCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSS-CCCCGGG-GTTCTTCCEE
T ss_pred             hcCcccEEEccCC-CcccCh-hHhcCCCCCEEEccCC-ccCCCcc-cccCCCCCEEECCCC-cCCCChh-hccCCCCCEE
Confidence            3456667777665 344443 3566677777777776 3444443 444567777777764 3444443 7777788888


Q ss_pred             Eecc-cCCCcCCCCCCCCcceEEeecCchhhHHhhhhcccCCCCcCEEEEecCCCcccccCccccccCCCCCCCCCccee
Q 045021          295 RIGG-KLPSLEEDGLPTNLHFLKIERNMEIWKSMIERGFHKFSSLRHLTIEGCDDDMVSFPPEDRRLGTTLPLPASLASL  373 (461)
Q Consensus       295 ~l~~-~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~i~~~~~~~~~~~~~~~~L~~L  373 (461)
                      ++++ .+..++....+++|++|++++|. ++..   ..+..+++|++|++++|  .+..++.  +      ..+++|+.|
T Consensus       118 ~L~~n~i~~~~~l~~l~~L~~L~l~~n~-l~~~---~~l~~l~~L~~L~L~~N--~l~~~~~--l------~~l~~L~~L  183 (291)
T 1h6t_A          118 SLEHNGISDINGLVHLPQLESLYLGNNK-ITDI---TVLSRLTKLDTLSLEDN--QISDIVP--L------AGLTKLQNL  183 (291)
T ss_dssp             ECTTSCCCCCGGGGGCTTCCEEECCSSC-CCCC---GGGGGCTTCSEEECCSS--CCCCCGG--G------TTCTTCCEE
T ss_pred             ECCCCcCCCChhhcCCCCCCEEEccCCc-CCcc---hhhccCCCCCEEEccCC--ccccchh--h------cCCCccCEE
Confidence            8877 66666555666778888888776 3322   24677888888888887  6666554  3      366788888


Q ss_pred             ecCCCCCCcccccchhhccCCcEEEecCCCCCcccCC
Q 045021          374 TIGDFPNLERLSSSIVDLQNLKYLKLYDCPKLKYFSE  410 (461)
Q Consensus       374 ~l~~~~~l~~i~~~~~~~~~L~~L~l~~C~~l~~~~~  410 (461)
                      +++++ .++.++ .+..+++|+.|++++ +.++..+.
T Consensus       184 ~L~~N-~i~~l~-~l~~l~~L~~L~l~~-n~i~~~~~  217 (291)
T 1h6t_A          184 YLSKN-HISDLR-ALAGLKNLDVLELFS-QECLNKPI  217 (291)
T ss_dssp             ECCSS-CCCBCG-GGTTCTTCSEEEEEE-EEEECCCE
T ss_pred             ECCCC-cCCCCh-hhccCCCCCEEECcC-CcccCCcc
Confidence            88884 777775 477888888888888 55655444

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.44  E-value=5.8e-13  Score=122.92  Aligned_cols=170  Identities=18%  Similarity=0.163  Sum_probs=138.6

Q ss_pred             cCCCCCccEEEecCCCCCccCCCCCCCCCCcceEeeccCccccccccccCCCCCccEEEecc-cCCCcCCCCCCCCcceE
Q 045021          237 LHNLRQLQEIQLWGCENLVSFPEGGLPCAKLSKLGIYRCERLEALPKGLHNLKSLKKLRIGG-KLPSLEEDGLPTNLHFL  315 (461)
Q Consensus       237 ~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~l~~L~~L~l~~-~~~~l~~~~~~~~L~~L  315 (461)
                      ...+++|+.|++++| .+..++. ...+++|++|++++| .++.++. +..+++|++|++++ .+..++....+++|++|
T Consensus        42 ~~~l~~L~~L~l~~~-~i~~~~~-~~~l~~L~~L~L~~n-~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L  117 (291)
T 1h6t_A           42 QNELNSIDQIIANNS-DIKSVQG-IQYLPNVTKLFLNGN-KLTDIKP-LANLKNLGWLFLDENKVKDLSSLKDLKKLKSL  117 (291)
T ss_dssp             HHHHHTCCEEECTTS-CCCCCTT-GGGCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSSCCCCGGGGTTCTTCCEE
T ss_pred             hhhcCcccEEEccCC-CcccChh-HhcCCCCCEEEccCC-ccCCCcc-cccCCCCCEEECCCCcCCCChhhccCCCCCEE
Confidence            345789999999997 5666654 455779999999996 5666665 89999999999999 88888877888999999


Q ss_pred             EeecCchhhHHhhhhcccCCCCcCEEEEecCCCcccccCccccccCCCCCCCCCcceeecCCCCCCcccccchhhccCCc
Q 045021          316 KIERNMEIWKSMIERGFHKFSSLRHLTIEGCDDDMVSFPPEDRRLGTTLPLPASLASLTIGDFPNLERLSSSIVDLQNLK  395 (461)
Q Consensus       316 ~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~L~  395 (461)
                      ++++|. +...   ..+..+++|++|++++|  .+..++.  +      ..+++|+.|+++++ .+..++. +..+++|+
T Consensus       118 ~L~~n~-i~~~---~~l~~l~~L~~L~l~~n--~l~~~~~--l------~~l~~L~~L~L~~N-~l~~~~~-l~~l~~L~  181 (291)
T 1h6t_A          118 SLEHNG-ISDI---NGLVHLPQLESLYLGNN--KITDITV--L------SRLTKLDTLSLEDN-QISDIVP-LAGLTKLQ  181 (291)
T ss_dssp             ECTTSC-CCCC---GGGGGCTTCCEEECCSS--CCCCCGG--G------GGCTTCSEEECCSS-CCCCCGG-GTTCTTCC
T ss_pred             ECCCCc-CCCC---hhhcCCCCCCEEEccCC--cCCcchh--h------ccCCCCCEEEccCC-ccccchh-hcCCCccC
Confidence            999997 3322   25778999999999998  7777743  4      36789999999995 7877765 88999999


Q ss_pred             EEEecCCCCCcccCCCCCcccccEeeccCCch
Q 045021          396 YLKLYDCPKLKYFSEKGLPSSLLRLYIDECPL  427 (461)
Q Consensus       396 ~L~l~~C~~l~~~~~~~~~~~L~~L~i~~c~~  427 (461)
                      +|++++ +.++.++.-...++|+.|++++|+.
T Consensus       182 ~L~L~~-N~i~~l~~l~~l~~L~~L~l~~n~i  212 (291)
T 1h6t_A          182 NLYLSK-NHISDLRALAGLKNLDVLELFSQEC  212 (291)
T ss_dssp             EEECCS-SCCCBCGGGTTCTTCSEEEEEEEEE
T ss_pred             EEECCC-CcCCCChhhccCCCCCEEECcCCcc
Confidence            999999 7888887644478999999998853

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.41  E-value=2.4e-14  Score=138.06  Aligned_cols=235  Identities=12%  Similarity=0.071  Sum_probs=143.8

Q ss_pred             ccCccEEEEecCCCCeecccCCCCcchhhhcccCCCCCCccEEEEecCC--ch--------hhhHHhhcCCCccceeecc
Q 045021          156 SYLLEKLEIWDCPSLTCIFSKNELPATLESLEVGNQPPSLKSLNVWSCS--KL--------ESIAERLDNNTSLEMISIL  225 (461)
Q Consensus       156 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~--~l--------~~~~~~~~~l~~L~~L~l~  225 (461)
                      .++|+.|++++ +.+.. .....++.      ....+++|++|+++++.  .+        ..+...+..+++|++|+++
T Consensus        31 ~~~L~~L~L~~-n~i~~-~~~~~l~~------~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls  102 (386)
T 2ca6_A           31 DDSVKEIVLSG-NTIGT-EAARWLSE------NIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS  102 (386)
T ss_dssp             CSCCCEEECTT-SEECH-HHHHHHHH------TTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred             CCCccEEECCC-CCCCH-HHHHHHHH------HHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECC
Confidence            66899999988 45543 11100100      11223679999988862  11        1222345788899999998


Q ss_pred             ccccce----ecccccCCCCCccEEEecCCCCCcc-----CCCCCCCC---------CCcceEeeccCccc-cccc---c
Q 045021          226 WCENLK----FLPSGLHNLRQLQEIQLWGCENLVS-----FPEGGLPC---------AKLSKLGIYRCERL-EALP---K  283 (461)
Q Consensus       226 ~~~~~~----~~~~~~~~l~~L~~L~l~~~~~l~~-----l~~~~~~~---------~~L~~L~l~~c~~~-~~~~---~  283 (461)
                      +|..-.    .++..+..+++|++|++++|.. ..     ++.....+         ++|++|++++|.-- ..++   .
T Consensus       103 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l-~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~  181 (386)
T 2ca6_A          103 DNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGL-GPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAK  181 (386)
T ss_dssp             SCCCCTTTHHHHHHHHHHCTTCCEEECCSSCC-HHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHH
T ss_pred             CCcCCHHHHHHHHHHHHhCCCCCEEECcCCCC-CHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHH
Confidence            874332    3566677788999999988743 21     11111111         58899999887532 2333   3


Q ss_pred             ccCCCCCccEEEecc-cCC------CcC-CCCCCCCcceEEeecCchhhH---HhhhhcccCCCCcCEEEEecCCCcccc
Q 045021          284 GLHNLKSLKKLRIGG-KLP------SLE-EDGLPTNLHFLKIERNMEIWK---SMIERGFHKFSSLRHLTIEGCDDDMVS  352 (461)
Q Consensus       284 ~~~~l~~L~~L~l~~-~~~------~l~-~~~~~~~L~~L~l~~~~~l~~---~~~~~~~~~l~~L~~L~l~~~~~~~~~  352 (461)
                      .+..+++|++|++++ .+.      .++ ....+++|++|++++|. +++   ......+..+++|++|++++|  .+..
T Consensus       182 ~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~-l~~~g~~~l~~~l~~~~~L~~L~L~~n--~i~~  258 (386)
T 2ca6_A          182 TFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNT-FTHLGSSALAIALKSWPNLRELGLNDC--LLSA  258 (386)
T ss_dssp             HHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSC-CHHHHHHHHHHHGGGCTTCCEEECTTC--CCCH
T ss_pred             HHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCC-CCcHHHHHHHHHHccCCCcCEEECCCC--CCch
Confidence            566788888998888 554      122 23456788888888887 321   111224677888888888887  4443


Q ss_pred             c-----CccccccCCCCCCCCCcceeecCCCCCCcc-----cccch-hhccCCcEEEecCCCCCcccC
Q 045021          353 F-----PPEDRRLGTTLPLPASLASLTIGDFPNLER-----LSSSI-VDLQNLKYLKLYDCPKLKYFS  409 (461)
Q Consensus       353 i-----~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~-----i~~~~-~~~~~L~~L~l~~C~~l~~~~  409 (461)
                      .     +.. +.    ....++|++|++++| .+..     ++..+ ..+++|++|++++ +.++...
T Consensus       259 ~~~~~l~~~-l~----~~~~~~L~~L~L~~n-~i~~~g~~~l~~~l~~~l~~L~~L~l~~-N~l~~~~  319 (386)
T 2ca6_A          259 RGAAAVVDA-FS----KLENIGLQTLRLQYN-EIELDAVRTLKTVIDEKMPDLLFLELNG-NRFSEED  319 (386)
T ss_dssp             HHHHHHHHH-HH----TCSSCCCCEEECCSS-CCBHHHHHHHHHHHHHHCTTCCEEECTT-SBSCTTS
T ss_pred             hhHHHHHHH-Hh----hccCCCeEEEECcCC-cCCHHHHHHHHHHHHhcCCCceEEEccC-CcCCcch
Confidence            2     221 10    012578888888885 5655     66555 5578888888888 5555443

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.40  E-value=2.5e-14  Score=137.97  Aligned_cols=223  Identities=16%  Similarity=0.140  Sum_probs=144.7

Q ss_pred             CCccEEEEecCCchhh----hHHhhcCCCccceeecccccc--c-eecc-------cccCCCCCccEEEecCCCCCc---
Q 045021          193 PSLKSLNVWSCSKLES----IAERLDNNTSLEMISILWCEN--L-KFLP-------SGLHNLRQLQEIQLWGCENLV---  255 (461)
Q Consensus       193 ~~L~~L~l~~~~~l~~----~~~~~~~l~~L~~L~l~~~~~--~-~~~~-------~~~~~l~~L~~L~l~~~~~l~---  255 (461)
                      ++|++|+++++.....    ++..+..+++|++|++++|..  + ..+|       ..+..+++|++|++++|..-.   
T Consensus        32 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~  111 (386)
T 2ca6_A           32 DSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQ  111 (386)
T ss_dssp             SCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTH
T ss_pred             CCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHH
Confidence            6799999988643333    333577889999999987621  1 1223       234678899999999874322   


Q ss_pred             -cCCCCCCCCCCcceEeeccCcccc----ccccccCCC---------CCccEEEecc-cCC--CcCC----CCCCCCcce
Q 045021          256 -SFPEGGLPCAKLSKLGIYRCERLE----ALPKGLHNL---------KSLKKLRIGG-KLP--SLEE----DGLPTNLHF  314 (461)
Q Consensus       256 -~l~~~~~~~~~L~~L~l~~c~~~~----~~~~~~~~l---------~~L~~L~l~~-~~~--~l~~----~~~~~~L~~  314 (461)
                       .++.....+++|++|++++|..-.    .++..+..+         ++|++|++++ .+.  .++.    ...+++|++
T Consensus       112 ~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~  191 (386)
T 2ca6_A          112 EPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHT  191 (386)
T ss_dssp             HHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCE
T ss_pred             HHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCE
Confidence             133333446789999999875422    222233334         8899999988 543  3331    134568999


Q ss_pred             EEeecCchhhHH----hhhhcccCCCCcCEEEEecCCCcc-----cccCccccccCCCCCCCCCcceeecCCCCCCccc-
Q 045021          315 LKIERNMEIWKS----MIERGFHKFSSLRHLTIEGCDDDM-----VSFPPEDRRLGTTLPLPASLASLTIGDFPNLERL-  384 (461)
Q Consensus       315 L~l~~~~~l~~~----~~~~~~~~l~~L~~L~l~~~~~~~-----~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i-  384 (461)
                      |++++|. +.+.    .....+..+++|++|++++|  .+     ..++.. +      ...++|++|++++| .+... 
T Consensus       192 L~L~~n~-l~~~g~~~l~~~~l~~~~~L~~L~Ls~n--~l~~~g~~~l~~~-l------~~~~~L~~L~L~~n-~i~~~~  260 (386)
T 2ca6_A          192 VKMVQNG-IRPEGIEHLLLEGLAYCQELKVLDLQDN--TFTHLGSSALAIA-L------KSWPNLRELGLNDC-LLSARG  260 (386)
T ss_dssp             EECCSSC-CCHHHHHHHHHTTGGGCTTCCEEECCSS--CCHHHHHHHHHHH-G------GGCTTCCEEECTTC-CCCHHH
T ss_pred             EECcCCC-CCHhHHHHHHHHHhhcCCCccEEECcCC--CCCcHHHHHHHHH-H------ccCCCcCEEECCCC-CCchhh
Confidence            9999886 3321    12225678889999999987  55     444543 3      25678999999986 45443 


Q ss_pred             ----ccchhh--ccCCcEEEecCCCCCcc-----cCCCC--CcccccEeeccCCch
Q 045021          385 ----SSSIVD--LQNLKYLKLYDCPKLKY-----FSEKG--LPSSLLRLYIDECPL  427 (461)
Q Consensus       385 ----~~~~~~--~~~L~~L~l~~C~~l~~-----~~~~~--~~~~L~~L~i~~c~~  427 (461)
                          +..+..  +++|++|++++ +.++.     ++..-  .+++|++|++++|+.
T Consensus       261 ~~~l~~~l~~~~~~~L~~L~L~~-n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l  315 (386)
T 2ca6_A          261 AAAVVDAFSKLENIGLQTLRLQY-NEIELDAVRTLKTVIDEKMPDLLFLELNGNRF  315 (386)
T ss_dssp             HHHHHHHHHTCSSCCCCEEECCS-SCCBHHHHHHHHHHHHHHCTTCCEEECTTSBS
T ss_pred             HHHHHHHHhhccCCCeEEEECcC-CcCCHHHHHHHHHHHHhcCCCceEEEccCCcC
Confidence                344533  88899999998 56766     54421  148899999988863

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.39  E-value=3.2e-12  Score=128.09  Aligned_cols=174  Identities=25%  Similarity=0.349  Sum_probs=105.4

Q ss_pred             CccEEEecCCcCCccccccCCCCCCcCEEEecCCcCcccccCCCCCCCccEEEEeecCCccccCcccccCCCCcccEEEe
Q 045021           30 RLEYLILRYCKGLVKLPQSSLSLSSLREIEICRCHSLVSFPEVALPSKLKKIEIRECDALKSLPEAWMCGTNSSLEILKI  109 (461)
Q Consensus        30 ~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l  109 (461)
                      +|++|+++++ .+..+|..+  +++|++|++++| .+..+|  ..+++|++|+++++. ++.+|. +.    .+|+.|++
T Consensus        60 ~L~~L~Ls~n-~L~~lp~~l--~~~L~~L~Ls~N-~l~~ip--~~l~~L~~L~Ls~N~-l~~ip~-l~----~~L~~L~L  127 (571)
T 3cvr_A           60 QFSELQLNRL-NLSSLPDNL--PPQITVLEITQN-ALISLP--ELPASLEYLDACDNR-LSTLPE-LP----ASLKHLDV  127 (571)
T ss_dssp             TCSEEECCSS-CCSCCCSCC--CTTCSEEECCSS-CCSCCC--CCCTTCCEEECCSSC-CSCCCC-CC----TTCCEEEC
T ss_pred             CccEEEeCCC-CCCccCHhH--cCCCCEEECcCC-CCcccc--cccCCCCEEEccCCC-CCCcch-hh----cCCCEEEC
Confidence            7888888874 456677655  377888888886 566677  567888888888864 666766 32    27888888


Q ss_pred             eCCCCCccccccCCCCCccEEecccCCCceEeccCCCcccccccccccCccEEEEecCCCCeecccCCCCcchhhhcccC
Q 045021          110 WSCHSLPYIARVQLPPSLKRLDISHCDNIRTLTVEDGIQSSSRRYTSYLLEKLEIWDCPSLTCIFSKNELPATLESLEVG  189 (461)
Q Consensus       110 ~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~  189 (461)
                      +++ .++.++.  .+++|+.|+++++. ++.+|  .   .      .++|+.|++++ +.++. +|.  +.         
T Consensus       128 s~N-~l~~lp~--~l~~L~~L~Ls~N~-l~~lp--~---~------l~~L~~L~Ls~-N~L~~-lp~--l~---------  179 (571)
T 3cvr_A          128 DNN-QLTMLPE--LPALLEYINADNNQ-LTMLP--E---L------PTSLEVLSVRN-NQLTF-LPE--LP---------  179 (571)
T ss_dssp             CSS-CCSCCCC--CCTTCCEEECCSSC-CSCCC--C---C------CTTCCEEECCS-SCCSC-CCC--CC---------
T ss_pred             CCC-cCCCCCC--cCccccEEeCCCCc-cCcCC--C---c------CCCcCEEECCC-CCCCC-cch--hh---------
Confidence            773 5666655  56777777777754 44455  3   1      33677777776 55555 333  21         


Q ss_pred             CCCCCccEEEEecCCchhhhHHhhcCCCcc-------ceeeccccccceecccccCCCCCccEEEecCC
Q 045021          190 NQPPSLKSLNVWSCSKLESIAERLDNNTSL-------EMISILWCENLKFLPSGLHNLRQLQEIQLWGC  251 (461)
Q Consensus       190 ~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L-------~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~  251 (461)
                         ++|+.|+++++ .+..+|. +..  +|       +.|++++| .+..+|..+..+++|+.|++++|
T Consensus       180 ---~~L~~L~Ls~N-~L~~lp~-~~~--~L~~~~~~L~~L~Ls~N-~l~~lp~~l~~l~~L~~L~L~~N  240 (571)
T 3cvr_A          180 ---ESLEALDVSTN-LLESLPA-VPV--RNHHSEETEIFFRCREN-RITHIPENILSLDPTCTIILEDN  240 (571)
T ss_dssp             ---TTCCEEECCSS-CCSSCCC-CC----------CCEEEECCSS-CCCCCCGGGGGSCTTEEEECCSS
T ss_pred             ---CCCCEEECcCC-CCCchhh-HHH--hhhcccccceEEecCCC-cceecCHHHhcCCCCCEEEeeCC
Confidence               24666666663 3444443 222  44       55555554 34445554545555555555555

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.36  E-value=2.6e-12  Score=130.19  Aligned_cols=171  Identities=19%  Similarity=0.240  Sum_probs=91.3

Q ss_pred             CCccceeeccccccceecccccCCCCCccEEEecCCCCCccCCCCCCCCCCcceEeeccCccccccccccCCCCCccEEE
Q 045021          216 NTSLEMISILWCENLKFLPSGLHNLRQLQEIQLWGCENLVSFPEGGLPCAKLSKLGIYRCERLEALPKGLHNLKSLKKLR  295 (461)
Q Consensus       216 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~l~~L~~L~  295 (461)
                      +++|+.|+++++ .+..++ .+..+++|+.|++++| .+..++. ...+++|+.|++++| .+..++ .+..+++|++|+
T Consensus        42 L~~L~~L~l~~n-~i~~l~-~l~~l~~L~~L~Ls~N-~l~~~~~-l~~l~~L~~L~Ls~N-~l~~l~-~l~~l~~L~~L~  115 (605)
T 1m9s_A           42 LNSIDQIIANNS-DIKSVQ-GIQYLPNVTKLFLNGN-KLTDIKP-LTNLKNLGWLFLDEN-KIKDLS-SLKDLKKLKSLS  115 (605)
T ss_dssp             HTTCCCCBCTTC-CCCCCT-TGGGCTTCCEEECTTS-CCCCCGG-GGGCTTCCEEECCSS-CCCCCT-TSTTCTTCCEEE
T ss_pred             CCCCCEEECcCC-CCCCCh-HHccCCCCCEEEeeCC-CCCCChh-hccCCCCCEEECcCC-CCCCCh-hhccCCCCCEEE
Confidence            445555555544 233333 3455556666666555 3333332 333445666666554 333333 355666666666


Q ss_pred             ecc-cCCCcCCCCCCCCcceEEeecCchhhHHhhhhcccCCCCcCEEEEecCCCcccccCccccccCCCCCCCCCcceee
Q 045021          296 IGG-KLPSLEEDGLPTNLHFLKIERNMEIWKSMIERGFHKFSSLRHLTIEGCDDDMVSFPPEDRRLGTTLPLPASLASLT  374 (461)
Q Consensus       296 l~~-~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~i~~~~~~~~~~~~~~~~L~~L~  374 (461)
                      +++ .+..++....+++|+.|++++|. +...   ..+..+++|+.|++++|  .+..++.  +      ..+++|+.|+
T Consensus       116 Ls~N~l~~l~~l~~l~~L~~L~Ls~N~-l~~l---~~l~~l~~L~~L~Ls~N--~l~~~~~--l------~~l~~L~~L~  181 (605)
T 1m9s_A          116 LEHNGISDINGLVHLPQLESLYLGNNK-ITDI---TVLSRLTKLDTLSLEDN--QISDIVP--L------AGLTKLQNLY  181 (605)
T ss_dssp             CTTSCCCCCGGGGGCTTCSEEECCSSC-CCCC---GGGGSCTTCSEEECCSS--CCCCCGG--G------TTCTTCCEEE
T ss_pred             ecCCCCCCCccccCCCccCEEECCCCc-cCCc---hhhcccCCCCEEECcCC--cCCCchh--h------ccCCCCCEEE
Confidence            666 55555444555566666666665 2211   24556666777777665  4444433  2      2455677777


Q ss_pred             cCCCCCCcccccchhhccCCcEEEecCCCCCcccC
Q 045021          375 IGDFPNLERLSSSIVDLQNLKYLKLYDCPKLKYFS  409 (461)
Q Consensus       375 l~~~~~l~~i~~~~~~~~~L~~L~l~~C~~l~~~~  409 (461)
                      +++| .+..++ .+..+++|+.|++++ +.+...|
T Consensus       182 Ls~N-~i~~l~-~l~~l~~L~~L~L~~-N~l~~~p  213 (605)
T 1m9s_A          182 LSKN-HISDLR-ALAGLKNLDVLELFS-QECLNKP  213 (605)
T ss_dssp             CCSS-CCCBCG-GGTTCTTCSEEECCS-EEEECCC
T ss_pred             CcCC-CCCCCh-HHccCCCCCEEEccC-CcCcCCc
Confidence            7663 555553 456666777777766 4444433

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.36  E-value=6.7e-12  Score=125.81  Aligned_cols=184  Identities=21%  Similarity=0.255  Sum_probs=98.1

Q ss_pred             CccEEEEecCCchhhhHHhhcCCCccceeeccccccceecccccCCCCCccEEEecCCCCCccCCCCCCCCCCcceEeec
Q 045021          194 SLKSLNVWSCSKLESIAERLDNNTSLEMISILWCENLKFLPSGLHNLRQLQEIQLWGCENLVSFPEGGLPCAKLSKLGIY  273 (461)
Q Consensus       194 ~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~  273 (461)
                      +++.|++.++ .+..+|..+  +++|++|++++| .+..+|   ..+++|+.|++++| .+..++. ...  +|++|+++
T Consensus        60 ~L~~L~Ls~n-~L~~lp~~l--~~~L~~L~Ls~N-~l~~ip---~~l~~L~~L~Ls~N-~l~~ip~-l~~--~L~~L~Ls  128 (571)
T 3cvr_A           60 QFSELQLNRL-NLSSLPDNL--PPQITVLEITQN-ALISLP---ELPASLEYLDACDN-RLSTLPE-LPA--SLKHLDVD  128 (571)
T ss_dssp             TCSEEECCSS-CCSCCCSCC--CTTCSEEECCSS-CCSCCC---CCCTTCCEEECCSS-CCSCCCC-CCT--TCCEEECC
T ss_pred             CccEEEeCCC-CCCccCHhH--cCCCCEEECcCC-CCcccc---cccCCCCEEEccCC-CCCCcch-hhc--CCCEEECC
Confidence            4666666664 344444333  256666666665 344455   33566666666665 4444555 222  66666666


Q ss_pred             cCccccccccccCCCCCccEEEecc-cCCCcCCCCCCCCcceEEeecCchhhHHhhhhcccCCCCcCEEEEecCCCcccc
Q 045021          274 RCERLEALPKGLHNLKSLKKLRIGG-KLPSLEEDGLPTNLHFLKIERNMEIWKSMIERGFHKFSSLRHLTIEGCDDDMVS  352 (461)
Q Consensus       274 ~c~~~~~~~~~~~~l~~L~~L~l~~-~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~  352 (461)
                      +| .++.+|.   .+++|++|++++ .+..++.  .+++|++|++++|. ++. .+.  +.  ++|++|++++|  .+..
T Consensus       129 ~N-~l~~lp~---~l~~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~N~-L~~-lp~--l~--~~L~~L~Ls~N--~L~~  194 (571)
T 3cvr_A          129 NN-QLTMLPE---LPALLEYINADNNQLTMLPE--LPTSLEVLSVRNNQ-LTF-LPE--LP--ESLEALDVSTN--LLES  194 (571)
T ss_dssp             SS-CCSCCCC---CCTTCCEEECCSSCCSCCCC--CCTTCCEEECCSSC-CSC-CCC--CC--TTCCEEECCSS--CCSS
T ss_pred             CC-cCCCCCC---cCccccEEeCCCCccCcCCC--cCCCcCEEECCCCC-CCC-cch--hh--CCCCEEECcCC--CCCc
Confidence            64 3444554   456666666666 5555554  45566666666665 222 211  22  56666666665  5555


Q ss_pred             cCccccccCCCCCCCCCcceeecCCCCCCcccccchhhccCCcEEEecCCCCCcc
Q 045021          353 FPPEDRRLGTTLPLPASLASLTIGDFPNLERLSSSIVDLQNLKYLKLYDCPKLKY  407 (461)
Q Consensus       353 i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~L~~L~l~~C~~l~~  407 (461)
                      +|.  +.. .-...++.|+.|++++ +.++.+|..+..+++|+.|++++ +.++.
T Consensus       195 lp~--~~~-~L~~~~~~L~~L~Ls~-N~l~~lp~~l~~l~~L~~L~L~~-N~l~~  244 (571)
T 3cvr_A          195 LPA--VPV-RNHHSEETEIFFRCRE-NRITHIPENILSLDPTCTIILED-NPLSS  244 (571)
T ss_dssp             CCC--CC---------CCEEEECCS-SCCCCCCGGGGGSCTTEEEECCS-SSCCH
T ss_pred             hhh--HHH-hhhcccccceEEecCC-CcceecCHHHhcCCCCCEEEeeC-CcCCC
Confidence            554  210 0000111226666666 35666665555666666666666 44443

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.36  E-value=2.8e-12  Score=111.17  Aligned_cols=128  Identities=12%  Similarity=0.135  Sum_probs=60.4

Q ss_pred             hcCCCccceeeccccccceecccccCCCCCccEEEecCCCCCccCCCCCCCCCCcceEeeccCccccccccccCCCCCcc
Q 045021          213 LDNNTSLEMISILWCENLKFLPSGLHNLRQLQEIQLWGCENLVSFPEGGLPCAKLSKLGIYRCERLEALPKGLHNLKSLK  292 (461)
Q Consensus       213 ~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~l~~L~  292 (461)
                      +..+++|++|++++| .+..+ ..+..+++|++|++++|..-...+.....+++|++|++++|......+..+..+++|+
T Consensus        62 l~~l~~L~~L~l~~n-~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~  139 (197)
T 4ezg_A           62 IEYAHNIKDLTINNI-HATNY-NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVN  139 (197)
T ss_dssp             GGGCTTCSEEEEESC-CCSCC-GGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCC
T ss_pred             HhcCCCCCEEEccCC-CCCcc-hhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCC
Confidence            333444444444444 22222 2344445555555555422222233333344555555555433333344455555555


Q ss_pred             EEEecc-c-CCCcCCCCCCCCcceEEeecCchhhHHhhhhcccCCCCcCEEEEecC
Q 045021          293 KLRIGG-K-LPSLEEDGLPTNLHFLKIERNMEIWKSMIERGFHKFSSLRHLTIEGC  346 (461)
Q Consensus       293 ~L~l~~-~-~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~  346 (461)
                      +|++++ . +..++....+++|++|++++|. +.+..   .+..+++|++|++++|
T Consensus       140 ~L~L~~n~~i~~~~~l~~l~~L~~L~l~~n~-i~~~~---~l~~l~~L~~L~l~~N  191 (197)
T 4ezg_A          140 SIDLSYNGAITDIMPLKTLPELKSLNIQFDG-VHDYR---GIEDFPKLNQLYAFSQ  191 (197)
T ss_dssp             EEECCSCTBCCCCGGGGGCSSCCEEECTTBC-CCCCT---TGGGCSSCCEEEECBC
T ss_pred             EEEccCCCCccccHhhcCCCCCCEEECCCCC-CcChH---HhccCCCCCEEEeeCc
Confidence            555555 3 4444444445566666666654 22111   3555666777777665

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.36  E-value=1.4e-13  Score=131.41  Aligned_cols=222  Identities=16%  Similarity=0.100  Sum_probs=134.5

Q ss_pred             CCCCccEEEEecCCchhhh-H----HhhcCCC-ccceeeccccccceecccccCCC-----CCccEEEecCCCCCccCCC
Q 045021          191 QPPSLKSLNVWSCSKLESI-A----ERLDNNT-SLEMISILWCENLKFLPSGLHNL-----RQLQEIQLWGCENLVSFPE  259 (461)
Q Consensus       191 ~~~~L~~L~l~~~~~l~~~-~----~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~l-----~~L~~L~l~~~~~l~~l~~  259 (461)
                      .+++|++|+++++. ++.. +    ..+..++ +|++|++++|..-...+..+..+     ++|++|++++|. +.....
T Consensus        20 ~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~-l~~~~~   97 (362)
T 3goz_A           20 IPHGVTSLDLSLNN-LYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNF-LSYKSS   97 (362)
T ss_dssp             SCTTCCEEECTTSC-GGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSCH
T ss_pred             CCCCceEEEccCCC-CChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCc-CChHHH
Confidence            33569999998864 4332 2    5677787 89999999874333323334333     889999999884 443221


Q ss_pred             -----CCCCC-CCcceEeeccCccccccc-c----ccCC-CCCccEEEecc-cCCC-----cCCC--CCCCCcceEEeec
Q 045021          260 -----GGLPC-AKLSKLGIYRCERLEALP-K----GLHN-LKSLKKLRIGG-KLPS-----LEED--GLPTNLHFLKIER  319 (461)
Q Consensus       260 -----~~~~~-~~L~~L~l~~c~~~~~~~-~----~~~~-l~~L~~L~l~~-~~~~-----l~~~--~~~~~L~~L~l~~  319 (461)
                           ....+ ++|++|++++|. ++..+ .    .+.. .++|++|++++ .+..     ++..  ..+++|++|++++
T Consensus        98 ~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~  176 (362)
T 3goz_A           98 DELVKTLAAIPFTITVLDLGWND-FSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRG  176 (362)
T ss_dssp             HHHHHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTT
T ss_pred             HHHHHHHHhCCCCccEEECcCCc-CCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecC
Confidence                 11122 589999998875 33322 1    2444 36899999888 4442     2111  2234889999988


Q ss_pred             CchhhHHhh---hhcccCC-CCcCEEEEecCCCcccc-----cCccccccCCCCCCCCCcceeecCCCCCCcccc-----
Q 045021          320 NMEIWKSMI---ERGFHKF-SSLRHLTIEGCDDDMVS-----FPPEDRRLGTTLPLPASLASLTIGDFPNLERLS-----  385 (461)
Q Consensus       320 ~~~l~~~~~---~~~~~~l-~~L~~L~l~~~~~~~~~-----i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~-----  385 (461)
                      |. +++...   ...+..+ ++|++|++++|  .+..     ++.. +.     ..+++|++|+++++ .+...+     
T Consensus       177 n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N--~i~~~~~~~l~~~-l~-----~~~~~L~~L~Ls~N-~l~~~~~~~l~  246 (362)
T 3goz_A          177 NN-LASKNCAELAKFLASIPASVTSLDLSAN--LLGLKSYAELAYI-FS-----SIPNHVVSLNLCLN-CLHGPSLENLK  246 (362)
T ss_dssp             SC-GGGSCHHHHHHHHHTSCTTCCEEECTTS--CGGGSCHHHHHHH-HH-----HSCTTCCEEECCSS-CCCCCCHHHHH
T ss_pred             CC-CchhhHHHHHHHHHhCCCCCCEEECCCC--CCChhHHHHHHHH-Hh-----cCCCCceEEECcCC-CCCcHHHHHHH
Confidence            86 332221   1234455 48899999887  5554     3332 21     12458889999884 565543     


Q ss_pred             cchhhccCCcEEEecCCCCCcccCC--------C-CCcccccEeeccCCc
Q 045021          386 SSIVDLQNLKYLKLYDCPKLKYFSE--------K-GLPSSLLRLYIDECP  426 (461)
Q Consensus       386 ~~~~~~~~L~~L~l~~C~~l~~~~~--------~-~~~~~L~~L~i~~c~  426 (461)
                      ..+..+++|++|++++| .+..++.        . ...++|++|++++++
T Consensus       247 ~~~~~l~~L~~L~L~~n-~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~  295 (362)
T 3goz_A          247 LLKDSLKHLQTVYLDYD-IVKNMSKEQCKALGAAFPNIQKIILVDKNGKE  295 (362)
T ss_dssp             HTTTTTTTCSEEEEEHH-HHTTCCHHHHHHHHTTSTTCCEEEEECTTSCB
T ss_pred             HHHhcCCCccEEEeccC-CccccCHHHHHHHHHHhccCCceEEEecCCCc
Confidence            33466788899998884 3222211        1 124678888888875

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.35  E-value=3.4e-12  Score=129.27  Aligned_cols=170  Identities=18%  Similarity=0.166  Sum_probs=138.4

Q ss_pred             cCCCCCccEEEecCCCCCccCCCCCCCCCCcceEeeccCccccccccccCCCCCccEEEecc-cCCCcCCCCCCCCcceE
Q 045021          237 LHNLRQLQEIQLWGCENLVSFPEGGLPCAKLSKLGIYRCERLEALPKGLHNLKSLKKLRIGG-KLPSLEEDGLPTNLHFL  315 (461)
Q Consensus       237 ~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~l~~L~~L~l~~-~~~~l~~~~~~~~L~~L  315 (461)
                      +..+++|+.|++++| .+..++. ...+++|+.|++++| .+..++. +..+++|+.|++++ .+..++....+++|++|
T Consensus        39 ~~~L~~L~~L~l~~n-~i~~l~~-l~~l~~L~~L~Ls~N-~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L  114 (605)
T 1m9s_A           39 QNELNSIDQIIANNS-DIKSVQG-IQYLPNVTKLFLNGN-KLTDIKP-LTNLKNLGWLFLDENKIKDLSSLKDLKKLKSL  114 (605)
T ss_dssp             HHHHTTCCCCBCTTC-CCCCCTT-GGGCTTCCEEECTTS-CCCCCGG-GGGCTTCCEEECCSSCCCCCTTSTTCTTCCEE
T ss_pred             hhcCCCCCEEECcCC-CCCCChH-HccCCCCCEEEeeCC-CCCCChh-hccCCCCCEEECcCCCCCCChhhccCCCCCEE
Confidence            456789999999987 5666653 455789999999996 4566655 88999999999999 88888877888999999


Q ss_pred             EeecCchhhHHhhhhcccCCCCcCEEEEecCCCcccccCccccccCCCCCCCCCcceeecCCCCCCcccccchhhccCCc
Q 045021          316 KIERNMEIWKSMIERGFHKFSSLRHLTIEGCDDDMVSFPPEDRRLGTTLPLPASLASLTIGDFPNLERLSSSIVDLQNLK  395 (461)
Q Consensus       316 ~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~L~  395 (461)
                      ++++|. +...   ..+..+++|+.|++++|  .+..++.  +      ..+++|+.|++++| .+..++. +..+++|+
T Consensus       115 ~Ls~N~-l~~l---~~l~~l~~L~~L~Ls~N--~l~~l~~--l------~~l~~L~~L~Ls~N-~l~~~~~-l~~l~~L~  178 (605)
T 1m9s_A          115 SLEHNG-ISDI---NGLVHLPQLESLYLGNN--KITDITV--L------SRLTKLDTLSLEDN-QISDIVP-LAGLTKLQ  178 (605)
T ss_dssp             ECTTSC-CCCC---GGGGGCTTCSEEECCSS--CCCCCGG--G------GSCTTCSEEECCSS-CCCCCGG-GTTCTTCC
T ss_pred             EecCCC-CCCC---ccccCCCccCEEECCCC--ccCCchh--h------cccCCCCEEECcCC-cCCCchh-hccCCCCC
Confidence            999998 3322   24788999999999998  7777743  4      36789999999995 6777755 88999999


Q ss_pred             EEEecCCCCCcccCCCCCcccccEeeccCCch
Q 045021          396 YLKLYDCPKLKYFSEKGLPSSLLRLYIDECPL  427 (461)
Q Consensus       396 ~L~l~~C~~l~~~~~~~~~~~L~~L~i~~c~~  427 (461)
                      .|++++ +.++.++.-..+++|+.|++++|+.
T Consensus       179 ~L~Ls~-N~i~~l~~l~~l~~L~~L~L~~N~l  209 (605)
T 1m9s_A          179 NLYLSK-NHISDLRALAGLKNLDVLELFSQEC  209 (605)
T ss_dssp             EEECCS-SCCCBCGGGTTCTTCSEEECCSEEE
T ss_pred             EEECcC-CCCCCChHHccCCCCCEEEccCCcC
Confidence            999999 6888886644479999999999864

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.34  E-value=3.3e-12  Score=110.66  Aligned_cols=145  Identities=17%  Similarity=0.135  Sum_probs=76.2

Q ss_pred             CCccceeeccccccceecccccCCCCCccEEEecCCCCCccCCCCCCCCCCcceEeeccCccccccccccCCCCCccEEE
Q 045021          216 NTSLEMISILWCENLKFLPSGLHNLRQLQEIQLWGCENLVSFPEGGLPCAKLSKLGIYRCERLEALPKGLHNLKSLKKLR  295 (461)
Q Consensus       216 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~l~~L~~L~  295 (461)
                      +++|++|+++++ .+..++ .+..+++|++|++++| .+..++ ....+++|++|++++|.-....+..+..+++|++|+
T Consensus        43 l~~L~~L~l~~n-~i~~l~-~l~~l~~L~~L~l~~n-~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~  118 (197)
T 4ezg_A           43 MNSLTYITLANI-NVTDLT-GIEYAHNIKDLTINNI-HATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD  118 (197)
T ss_dssp             HHTCCEEEEESS-CCSCCT-TGGGCTTCSEEEEESC-CCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEE
T ss_pred             cCCccEEeccCC-CccChH-HHhcCCCCCEEEccCC-CCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEE
Confidence            445566666554 333444 4555666666666665 333332 223345666666666443333444566666666666


Q ss_pred             ecc-cCCC--cCCCCCCCCcceEEeecCchhhHHhhhhcccCCCCcCEEEEecCCCcccccCccccccCCCCCCCCCcce
Q 045021          296 IGG-KLPS--LEEDGLPTNLHFLKIERNMEIWKSMIERGFHKFSSLRHLTIEGCDDDMVSFPPEDRRLGTTLPLPASLAS  372 (461)
Q Consensus       296 l~~-~~~~--l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~i~~~~~~~~~~~~~~~~L~~  372 (461)
                      +++ .+..  ......+++|++|++++|..+++..   .+..+++|++|++++|  .+..++.  +      ..+++|+.
T Consensus       119 Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~---~l~~l~~L~~L~l~~n--~i~~~~~--l------~~l~~L~~  185 (197)
T 4ezg_A          119 ISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM---PLKTLPELKSLNIQFD--GVHDYRG--I------EDFPKLNQ  185 (197)
T ss_dssp             CCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG---GGGGCSSCCEEECTTB--CCCCCTT--G------GGCSSCCE
T ss_pred             ecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH---hhcCCCCCCEEECCCC--CCcChHH--h------ccCCCCCE
Confidence            666 4433  2222445566666666665333221   3555666666666665  4554442  2      24456666


Q ss_pred             eecCC
Q 045021          373 LTIGD  377 (461)
Q Consensus       373 L~l~~  377 (461)
                      |++++
T Consensus       186 L~l~~  190 (197)
T 4ezg_A          186 LYAFS  190 (197)
T ss_dssp             EEECB
T ss_pred             EEeeC
Confidence            66666

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.34  E-value=1.2e-12  Score=118.96  Aligned_cols=170  Identities=16%  Similarity=0.176  Sum_probs=120.2

Q ss_pred             CccceeeccccccceecccccCCCCCccEEEecCCCCCccCCCCCCCCCCcceEeeccCccccccccccCCCCCccEEEe
Q 045021          217 TSLEMISILWCENLKFLPSGLHNLRQLQEIQLWGCENLVSFPEGGLPCAKLSKLGIYRCERLEALPKGLHNLKSLKKLRI  296 (461)
Q Consensus       217 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~l~~L~~L~l  296 (461)
                      .++..++++.+ .+..++ .+..+++|+.|++++| .+..++ ....+++|++|++++| .++.++. +..+++|++|++
T Consensus        19 ~~l~~l~l~~~-~i~~~~-~~~~l~~L~~L~l~~n-~i~~l~-~l~~l~~L~~L~L~~N-~i~~~~~-l~~l~~L~~L~L   92 (263)
T 1xeu_A           19 ANAVKQNLGKQ-SVTDLV-SQKELSGVQNFNGDNS-NIQSLA-GMQFFTNLKELHLSHN-QISDLSP-LKDLTKLEELSV   92 (263)
T ss_dssp             HHHHHHHHTCS-CTTSEE-CHHHHTTCSEEECTTS-CCCCCT-TGGGCTTCCEEECCSS-CCCCCGG-GTTCSSCCEEEC
T ss_pred             HHHHHHHhcCC-Cccccc-chhhcCcCcEEECcCC-Ccccch-HHhhCCCCCEEECCCC-ccCCChh-hccCCCCCEEEC
Confidence            34555555553 333333 3556778888888876 556665 3444668888888875 4566655 788888888888


Q ss_pred             cc-cCCCcCCCCCCCCcceEEeecCchhhHHhhhhcccCCCCcCEEEEecCCCcccccCccccccCCCCCCCCCcceeec
Q 045021          297 GG-KLPSLEEDGLPTNLHFLKIERNMEIWKSMIERGFHKFSSLRHLTIEGCDDDMVSFPPEDRRLGTTLPLPASLASLTI  375 (461)
Q Consensus       297 ~~-~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~i~~~~~~~~~~~~~~~~L~~L~l  375 (461)
                      ++ .+..++.... ++|++|++++|. +...   ..+..+++|++|++++|  .+..++.  +      ..+++|+.|++
T Consensus        93 ~~N~l~~l~~~~~-~~L~~L~L~~N~-l~~~---~~l~~l~~L~~L~Ls~N--~i~~~~~--l------~~l~~L~~L~L  157 (263)
T 1xeu_A           93 NRNRLKNLNGIPS-ACLSRLFLDNNE-LRDT---DSLIHLKNLEILSIRNN--KLKSIVM--L------GFLSKLEVLDL  157 (263)
T ss_dssp             CSSCCSCCTTCCC-SSCCEEECCSSC-CSBS---GGGTTCTTCCEEECTTS--CCCBCGG--G------GGCTTCCEEEC
T ss_pred             CCCccCCcCcccc-CcccEEEccCCc-cCCC---hhhcCcccccEEECCCC--cCCCChH--H------ccCCCCCEEEC
Confidence            88 7777665544 789999998886 3322   24778889999999987  6777653  3      36778999999


Q ss_pred             CCCCCCcccccchhhccCCcEEEecCCCCCcccCC
Q 045021          376 GDFPNLERLSSSIVDLQNLKYLKLYDCPKLKYFSE  410 (461)
Q Consensus       376 ~~~~~l~~i~~~~~~~~~L~~L~l~~C~~l~~~~~  410 (461)
                      ++ +.+..+ ..+..+++|+.|++++ +.+...|.
T Consensus       158 ~~-N~i~~~-~~l~~l~~L~~L~l~~-N~~~~~~~  189 (263)
T 1xeu_A          158 HG-NEITNT-GGLTRLKKVNWIDLTG-QKCVNEPV  189 (263)
T ss_dssp             TT-SCCCBC-TTSTTCCCCCEEEEEE-EEEECCCE
T ss_pred             CC-CcCcch-HHhccCCCCCEEeCCC-CcccCCcc
Confidence            98 477777 6778889999999988 56665544

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.32  E-value=3.7e-11  Score=106.62  Aligned_cols=144  Identities=18%  Similarity=0.210  Sum_probs=68.3

Q ss_pred             ccEEEecCCCCCccCCCCCCCCCCcceEeeccCccccccccccCCCCCccEEEecc-cCCCcCCC--CCCCCcceEEeec
Q 045021          243 LQEIQLWGCENLVSFPEGGLPCAKLSKLGIYRCERLEALPKGLHNLKSLKKLRIGG-KLPSLEED--GLPTNLHFLKIER  319 (461)
Q Consensus       243 L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~l~~L~~L~l~~-~~~~l~~~--~~~~~L~~L~l~~  319 (461)
                      .+.++.+++ .+..+|....  ++|++|++++|......+..+..+++|++|++++ .+..++..  ..+++|++|++++
T Consensus        21 ~~~v~c~~~-~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~   97 (229)
T 3e6j_A           21 GTTVDCRSK-RHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT   97 (229)
T ss_dssp             TTEEECTTS-CCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEeEccCC-CcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence            445555543 4555555333  3677777776543333344566667677666666 55544432  2334444444444


Q ss_pred             CchhhHHhhhhcccCCCCcCEEEEecCCCcccccCccccccCCCCCCCCCcceeecCCCCCCcccc-cchhhccCCcEEE
Q 045021          320 NMEIWKSMIERGFHKFSSLRHLTIEGCDDDMVSFPPEDRRLGTTLPLPASLASLTIGDFPNLERLS-SSIVDLQNLKYLK  398 (461)
Q Consensus       320 ~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~-~~~~~~~~L~~L~  398 (461)
                      |. ++ ..+...+..+++|++|++++|  .+..++.. +      ..+++|+.|++++ +.+..++ ..+..+++|+.|+
T Consensus        98 N~-l~-~l~~~~~~~l~~L~~L~Ls~N--~l~~lp~~-~------~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~  165 (229)
T 3e6j_A           98 NQ-LT-VLPSAVFDRLVHLKELFMCCN--KLTELPRG-I------ERLTHLTHLALDQ-NQLKSIPHGAFDRLSSLTHAY  165 (229)
T ss_dssp             SC-CC-CCCTTTTTTCTTCCEEECCSS--CCCSCCTT-G------GGCTTCSEEECCS-SCCCCCCTTTTTTCTTCCEEE
T ss_pred             Cc-CC-ccChhHhCcchhhCeEeccCC--cccccCcc-c------ccCCCCCEEECCC-CcCCccCHHHHhCCCCCCEEE
Confidence            43 21 111112344455555555554  44444433 2      1334555555554 2444443 2244444555555


Q ss_pred             ecC
Q 045021          399 LYD  401 (461)
Q Consensus       399 l~~  401 (461)
                      +.+
T Consensus       166 l~~  168 (229)
T 3e6j_A          166 LFG  168 (229)
T ss_dssp             CTT
T ss_pred             eeC
Confidence            544

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.25  E-value=5.9e-11  Score=103.67  Aligned_cols=156  Identities=16%  Similarity=0.196  Sum_probs=70.3

Q ss_pred             CCcCEEEecCCcCcccccC--CCCCCCccEEEEeecCCccccCcccccCCCCcccEEEeeCCCCCcccccc--CCCCCcc
Q 045021           53 SSLREIEICRCHSLVSFPE--VALPSKLKKIEIRECDALKSLPEAWMCGTNSSLEILKIWSCHSLPYIARV--QLPPSLK  128 (461)
Q Consensus        53 ~~L~~L~l~~~~~l~~~~~--~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~--~~~~~L~  128 (461)
                      ++|++|+++++ .+..++.  ++.+++|++|+++++. ++.++...+.. +++|++|+++++ .++.++..  ..+++|+
T Consensus        28 ~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~-l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~  103 (208)
T 2o6s_A           28 AQTTYLDLETN-SLKSLPNGVFDELTSLTQLYLGGNK-LQSLPNGVFNK-LTSLTYLNLSTN-QLQSLPNGVFDKLTQLK  103 (208)
T ss_dssp             TTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTT-CTTCCEEECCSS-CCCCCCTTTTTTCTTCC
T ss_pred             CCCcEEEcCCC-ccCcCChhhhcccccCcEEECCCCc-cCccChhhcCC-CCCcCEEECCCC-cCCccCHhHhcCccCCC
Confidence            34555555554 2333333  3445555555555533 44444332211 245555555442 23333321  3344555


Q ss_pred             EEecccCCCceEeccCCC-cccccccccccCccEEEEecCCCCeecccCCCCcchhhhcccCCCCCCccEEEEecCCchh
Q 045021          129 RLDISHCDNIRTLTVEDG-IQSSSRRYTSYLLEKLEIWDCPSLTCIFSKNELPATLESLEVGNQPPSLKSLNVWSCSKLE  207 (461)
Q Consensus       129 ~L~l~~~~~~~~l~~~~~-~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~  207 (461)
                      +|+++++. +..++  .. +..      +++|+.|++++ +.++. ++...+...          ++|+.|++.++..  
T Consensus       104 ~L~L~~N~-l~~~~--~~~~~~------l~~L~~L~l~~-N~l~~-~~~~~~~~l----------~~L~~L~l~~N~~--  160 (208)
T 2o6s_A          104 ELALNTNQ-LQSLP--DGVFDK------LTQLKDLRLYQ-NQLKS-VPDGVFDRL----------TSLQYIWLHDNPW--  160 (208)
T ss_dssp             EEECCSSC-CCCCC--TTTTTT------CTTCCEEECCS-SCCSC-CCTTTTTTC----------TTCCEEECCSCCB--
T ss_pred             EEEcCCCc-CcccC--HhHhcc------CCcCCEEECCC-Cccce-eCHHHhccC----------CCccEEEecCCCe--
Confidence            55555432 23333  22 222      34566666665 45444 333222221          4566666666421  


Q ss_pred             hhHHhhcCCCccceeeccccccceecccccCCC
Q 045021          208 SIAERLDNNTSLEMISILWCENLKFLPSGLHNL  240 (461)
Q Consensus       208 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l  240 (461)
                           .+.+++|+.|++..+...+.+|.+++.+
T Consensus       161 -----~~~~~~l~~L~~~~n~~~g~ip~~~~~l  188 (208)
T 2o6s_A          161 -----DCTCPGIRYLSEWINKHSGVVRNSAGSV  188 (208)
T ss_dssp             -----CCCTTTTHHHHHHHHHCTTTBBCTTSSB
T ss_pred             -----ecCCCCHHHHHHHHHhCCceeeccCccc
Confidence                 2345566666666554445555555444

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.25  E-value=4.8e-13  Score=127.66  Aligned_cols=236  Identities=14%  Similarity=0.043  Sum_probs=144.0

Q ss_pred             CccEEEEecCCCCeecccCCCCcchhhhcccCCCCCCccEEEEecCCchhhhHHhhcC----C-Cccceeecccccccee
Q 045021          158 LLEKLEIWDCPSLTCIFSKNELPATLESLEVGNQPPSLKSLNVWSCSKLESIAERLDN----N-TSLEMISILWCENLKF  232 (461)
Q Consensus       158 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~----l-~~L~~L~l~~~~~~~~  232 (461)
                      +|+.|++++ +.++. .+...+...+     ...+.+|++|+++++......+..+..    . ++|++|++++|..-..
T Consensus        23 ~L~~L~Ls~-n~l~~-~~~~~l~~~l-----~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~   95 (362)
T 3goz_A           23 GVTSLDLSL-NNLYS-ISTVELIQAF-----ANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYK   95 (362)
T ss_dssp             TCCEEECTT-SCGGG-SCHHHHHHHH-----HTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGS
T ss_pred             CceEEEccC-CCCCh-HHHHHHHHHH-----HhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChH
Confidence            499999999 56665 3221111111     112227999999997433332333333    3 8999999998853322


Q ss_pred             ccc----ccCCC-CCccEEEecCCCCCccCCCC-----CCC-CCCcceEeeccCcccc----ccccccCCCC-CccEEEe
Q 045021          233 LPS----GLHNL-RQLQEIQLWGCENLVSFPEG-----GLP-CAKLSKLGIYRCERLE----ALPKGLHNLK-SLKKLRI  296 (461)
Q Consensus       233 ~~~----~~~~l-~~L~~L~l~~~~~l~~l~~~-----~~~-~~~L~~L~l~~c~~~~----~~~~~~~~l~-~L~~L~l  296 (461)
                      .+.    .+..+ ++|++|++++|. +......     ... .++|++|++++|.--.    .++..+..++ +|++|++
T Consensus        96 ~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~L  174 (362)
T 3goz_A           96 SSDELVKTLAAIPFTITVLDLGWND-FSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNL  174 (362)
T ss_dssp             CHHHHHHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEEC
T ss_pred             HHHHHHHHHHhCCCCccEEECcCCc-CCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeee
Confidence            222    24445 799999999984 4443321     111 3489999999975332    3344455665 9999999


Q ss_pred             cc-cCCCcCC-----C-CCC-CCcceEEeecCchhhHH----hhhhcccC-CCCcCEEEEecCCCcccccCccccccCCC
Q 045021          297 GG-KLPSLEE-----D-GLP-TNLHFLKIERNMEIWKS----MIERGFHK-FSSLRHLTIEGCDDDMVSFPPEDRRLGTT  363 (461)
Q Consensus       297 ~~-~~~~l~~-----~-~~~-~~L~~L~l~~~~~l~~~----~~~~~~~~-l~~L~~L~l~~~~~~~~~i~~~~~~~~~~  363 (461)
                      ++ .+.....     . ... ++|++|++++|. +.+.    ... .+.. .++|++|++++|  .+...+...+.  ..
T Consensus       175 s~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-i~~~~~~~l~~-~l~~~~~~L~~L~Ls~N--~l~~~~~~~l~--~~  248 (362)
T 3goz_A          175 RGNNLASKNCAELAKFLASIPASVTSLDLSANL-LGLKSYAELAY-IFSSIPNHVVSLNLCLN--CLHGPSLENLK--LL  248 (362)
T ss_dssp             TTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSC-GGGSCHHHHHH-HHHHSCTTCCEEECCSS--CCCCCCHHHHH--HT
T ss_pred             cCCCCchhhHHHHHHHHHhCCCCCCEEECCCCC-CChhHHHHHHH-HHhcCCCCceEEECcCC--CCCcHHHHHHH--HH
Confidence            99 5544331     1 122 599999999997 4331    111 2333 469999999998  55554331110  01


Q ss_pred             CCCCCCcceeecCCCC--C-----CcccccchhhccCCcEEEecCCCCCccc
Q 045021          364 LPLPASLASLTIGDFP--N-----LERLSSSIVDLQNLKYLKLYDCPKLKYF  408 (461)
Q Consensus       364 ~~~~~~L~~L~l~~~~--~-----l~~i~~~~~~~~~L~~L~l~~C~~l~~~  408 (461)
                      ....++|+.|++++|.  .     +..++..+..+++|+.|++++ +.+...
T Consensus       249 ~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~-N~l~~~  299 (362)
T 3goz_A          249 KDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNG-KEIHPS  299 (362)
T ss_dssp             TTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTS-CBCCGG
T ss_pred             HhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCC-CcCCCc
Confidence            1356789999999963  1     222335566788899999998 666654

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.20  E-value=6.5e-11  Score=112.78  Aligned_cols=126  Identities=19%  Similarity=0.213  Sum_probs=58.0

Q ss_pred             eeeccccccceecccccCCCCCccEEEecCCCCCccCCCCCC--CCCCcceEeeccCccccccc-cccCCCCCccEEEec
Q 045021          221 MISILWCENLKFLPSGLHNLRQLQEIQLWGCENLVSFPEGGL--PCAKLSKLGIYRCERLEALP-KGLHNLKSLKKLRIG  297 (461)
Q Consensus       221 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~--~~~~L~~L~l~~c~~~~~~~-~~~~~l~~L~~L~l~  297 (461)
                      .++.+++ .+..+|..+.  +.++.|++++| .+..++....  .+++|++|++++| .++.++ ..+..+++|++|+++
T Consensus        22 ~l~c~~~-~l~~iP~~~~--~~l~~L~Ls~N-~l~~l~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls   96 (361)
T 2xot_A           22 ILSCSKQ-QLPNVPQSLP--SYTALLDLSHN-NLSRLRAEWTPTRLTNLHSLLLSHN-HLNFISSEAFVPVPNLRYLDLS   96 (361)
T ss_dssp             EEECCSS-CCSSCCSSCC--TTCSEEECCSS-CCCEECTTSSSSCCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECC
T ss_pred             EEEeCCC-CcCccCccCC--CCCCEEECCCC-CCCccChhhhhhcccccCEEECCCC-cCCccChhhccCCCCCCEEECC
Confidence            4444432 3444554332  34666666665 3444443222  4556666666654 233332 345556666666665


Q ss_pred             c-cCCCcCCC--CCCCCcceEEeecCchhhHHhhhhcccCCCCcCEEEEecCCCcccccCc
Q 045021          298 G-KLPSLEED--GLPTNLHFLKIERNMEIWKSMIERGFHKFSSLRHLTIEGCDDDMVSFPP  355 (461)
Q Consensus       298 ~-~~~~l~~~--~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~i~~  355 (461)
                      + .+..++..  ..+++|++|++++|. +. ......+..+++|++|++++|  .+..++.
T Consensus        97 ~N~l~~~~~~~~~~l~~L~~L~L~~N~-i~-~~~~~~~~~l~~L~~L~L~~N--~l~~l~~  153 (361)
T 2xot_A           97 SNHLHTLDEFLFSDLQALEVLLLYNNH-IV-VVDRNAFEDMAQLQKLYLSQN--QISRFPV  153 (361)
T ss_dssp             SSCCCEECTTTTTTCTTCCEEECCSSC-CC-EECTTTTTTCTTCCEEECCSS--CCCSCCG
T ss_pred             CCcCCcCCHHHhCCCcCCCEEECCCCc-cc-EECHHHhCCcccCCEEECCCC--cCCeeCH
Confidence            5 44444332  233445555555444 11 111122444445555555544  4444443

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.20  E-value=1.3e-10  Score=101.54  Aligned_cols=124  Identities=26%  Similarity=0.330  Sum_probs=66.1

Q ss_pred             CccEEEEecCCchhhhH-HhhcCCCccceeeccccccceecc-cccCCCCCccEEEecCCCCCccCCCC-CCCCCCcceE
Q 045021          194 SLKSLNVWSCSKLESIA-ERLDNNTSLEMISILWCENLKFLP-SGLHNLRQLQEIQLWGCENLVSFPEG-GLPCAKLSKL  270 (461)
Q Consensus       194 ~L~~L~l~~~~~l~~~~-~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~l~~l~~~-~~~~~~L~~L  270 (461)
                      ++++|++.++ .+..++ ..+..+++|++|+++++ .+..++ ..+..+++|++|++++| .+..++.. ...+++|++|
T Consensus        29 ~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L  105 (208)
T 2o6s_A           29 QTTYLDLETN-SLKSLPNGVFDELTSLTQLYLGGN-KLQSLPNGVFNKLTSLTYLNLSTN-QLQSLPNGVFDKLTQLKEL  105 (208)
T ss_dssp             TCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEE
T ss_pred             CCcEEEcCCC-ccCcCChhhhcccccCcEEECCCC-ccCccChhhcCCCCCcCEEECCCC-cCCccCHhHhcCccCCCEE
Confidence            4667777664 333332 24556677777777665 333333 33566677777777665 34444432 3445566666


Q ss_pred             eeccCcccccccc-ccCCCCCccEEEecc-cCCCcCCC--CCCCCcceEEeecCc
Q 045021          271 GIYRCERLEALPK-GLHNLKSLKKLRIGG-KLPSLEED--GLPTNLHFLKIERNM  321 (461)
Q Consensus       271 ~l~~c~~~~~~~~-~~~~l~~L~~L~l~~-~~~~l~~~--~~~~~L~~L~l~~~~  321 (461)
                      ++++| .++.++. .+..+++|++|++++ .+..++..  ..+++|++|++++|+
T Consensus       106 ~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~  159 (208)
T 2o6s_A          106 ALNTN-QLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNP  159 (208)
T ss_dssp             ECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCC
T ss_pred             EcCCC-cCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCC
Confidence            66664 3333333 345566666666665 44444432  233455555555543

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.19  E-value=2.5e-11  Score=110.12  Aligned_cols=166  Identities=14%  Similarity=0.140  Sum_probs=129.3

Q ss_pred             CCCccEEEecCCCCCccCCCCCCCCCCcceEeeccCccccccccccCCCCCccEEEecc-cCCCcCCCCCCCCcceEEee
Q 045021          240 LRQLQEIQLWGCENLVSFPEGGLPCAKLSKLGIYRCERLEALPKGLHNLKSLKKLRIGG-KLPSLEEDGLPTNLHFLKIE  318 (461)
Q Consensus       240 l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~l~~L~~L~l~~-~~~~l~~~~~~~~L~~L~l~  318 (461)
                      +.++..++++++ .+..++ ....+++|++|++++| .++.++ .+..+++|++|++++ .+..++....+++|++|+++
T Consensus        18 l~~l~~l~l~~~-~i~~~~-~~~~l~~L~~L~l~~n-~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~l~~l~~L~~L~L~   93 (263)
T 1xeu_A           18 LANAVKQNLGKQ-SVTDLV-SQKELSGVQNFNGDNS-NIQSLA-GMQFFTNLKELHLSHNQISDLSPLKDLTKLEELSVN   93 (263)
T ss_dssp             HHHHHHHHHTCS-CTTSEE-CHHHHTTCSEEECTTS-CCCCCT-TGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECC
T ss_pred             HHHHHHHHhcCC-Cccccc-chhhcCcCcEEECcCC-Ccccch-HHhhCCCCCEEECCCCccCCChhhccCCCCCEEECC
Confidence            456667777765 445554 2344679999999996 577776 688999999999999 88777767778899999999


Q ss_pred             cCchhhHHhhhhcccCCCCcCEEEEecCCCcccccCccccccCCCCCCCCCcceeecCCCCCCcccccchhhccCCcEEE
Q 045021          319 RNMEIWKSMIERGFHKFSSLRHLTIEGCDDDMVSFPPEDRRLGTTLPLPASLASLTIGDFPNLERLSSSIVDLQNLKYLK  398 (461)
Q Consensus       319 ~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~L~~L~  398 (461)
                      +|. +....   .+.. ++|++|++++|  ++..++.  +      ..+++|+.|++++ +.++.++ .+..+++|+.|+
T Consensus        94 ~N~-l~~l~---~~~~-~~L~~L~L~~N--~l~~~~~--l------~~l~~L~~L~Ls~-N~i~~~~-~l~~l~~L~~L~  156 (263)
T 1xeu_A           94 RNR-LKNLN---GIPS-ACLSRLFLDNN--ELRDTDS--L------IHLKNLEILSIRN-NKLKSIV-MLGFLSKLEVLD  156 (263)
T ss_dssp             SSC-CSCCT---TCCC-SSCCEEECCSS--CCSBSGG--G------TTCTTCCEEECTT-SCCCBCG-GGGGCTTCCEEE
T ss_pred             CCc-cCCcC---cccc-CcccEEEccCC--ccCCChh--h------cCcccccEEECCC-CcCCCCh-HHccCCCCCEEE
Confidence            997 33221   1233 89999999998  7777754  4      3678999999999 5788885 788999999999


Q ss_pred             ecCCCCCcccCCCCCcccccEeeccCCch
Q 045021          399 LYDCPKLKYFSEKGLPSSLLRLYIDECPL  427 (461)
Q Consensus       399 l~~C~~l~~~~~~~~~~~L~~L~i~~c~~  427 (461)
                      +++ +.++.++.-...++|+.|++++++.
T Consensus       157 L~~-N~i~~~~~l~~l~~L~~L~l~~N~~  184 (263)
T 1xeu_A          157 LHG-NEITNTGGLTRLKKVNWIDLTGQKC  184 (263)
T ss_dssp             CTT-SCCCBCTTSTTCCCCCEEEEEEEEE
T ss_pred             CCC-CcCcchHHhccCCCCCEEeCCCCcc
Confidence            999 7888874434468999999999864

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.17  E-value=3.2e-10  Score=99.86  Aligned_cols=126  Identities=14%  Similarity=0.207  Sum_probs=85.3

Q ss_pred             CccEEEEecCCchhhhH-HhhcCCCccceeeccccccceecccccCCCCCccEEEecCCCCCccCCCC-CCCCCCcceEe
Q 045021          194 SLKSLNVWSCSKLESIA-ERLDNNTSLEMISILWCENLKFLPSGLHNLRQLQEIQLWGCENLVSFPEG-GLPCAKLSKLG  271 (461)
Q Consensus       194 ~L~~L~l~~~~~l~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~-~~~~~~L~~L~  271 (461)
                      +++.|++.++ .+..++ ..+..+++|++|++++|......+..+..+++|++|++++| .+..++.. ...+++|++|+
T Consensus        33 ~l~~L~l~~n-~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~  110 (220)
T 2v9t_B           33 TITEIRLEQN-TIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN-KITELPKSLFEGLFSLQLLL  110 (220)
T ss_dssp             TCCEEECCSS-CCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS-CCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCEEECCCC-cCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC-cCCccCHhHccCCCCCCEEE
Confidence            5777777774 344333 36777888888888877444444677888888888888887 55666653 34567888888


Q ss_pred             eccCccccccccccCCCCCccEEEecc-cCCCcCCC--CCCCCcceEEeecCc
Q 045021          272 IYRCERLEALPKGLHNLKSLKKLRIGG-KLPSLEED--GLPTNLHFLKIERNM  321 (461)
Q Consensus       272 l~~c~~~~~~~~~~~~l~~L~~L~l~~-~~~~l~~~--~~~~~L~~L~l~~~~  321 (461)
                      +++|......+..+..+++|++|++++ .+..++..  ..+++|++|++++|+
T Consensus       111 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~  163 (220)
T 2v9t_B          111 LNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNP  163 (220)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCC
Confidence            888643333355677888888888887 66666543  345667777776665

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.16  E-value=7.4e-10  Score=104.01  Aligned_cols=107  Identities=17%  Similarity=0.166  Sum_probs=56.9

Q ss_pred             CccEEEEecCCchhhhHHhhcCCCccceeeccccccceecc-cccCCCCCccEEEecCCCCCccCCC-CCCCCCCcc-eE
Q 045021          194 SLKSLNVWSCSKLESIAERLDNNTSLEMISILWCENLKFLP-SGLHNLRQLQEIQLWGCENLVSFPE-GGLPCAKLS-KL  270 (461)
Q Consensus       194 ~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~l~~l~~-~~~~~~~L~-~L  270 (461)
                      ++..+.+.+.............+++|+++++.++ .+..++ .+|.++++|+.+++.++  +..++. ....+++|+ .+
T Consensus       203 ~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n-~i~~I~~~aF~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l  279 (329)
T 3sb4_A          203 DINFLTIEGKLDNADFKLIRDYMPNLVSLDISKT-NATTIPDFTFAQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTL  279 (329)
T ss_dssp             GCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTB-CCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEE
T ss_pred             ccceEEEeeeecHHHHHHHHHhcCCCeEEECCCC-CcceecHhhhhCCCCCCEEECCcc--cceehHHHhhCChhccEEE
Confidence            3555555553222222212223667777777654 344443 45666777777777664  455544 334455666 66


Q ss_pred             eeccCccccccc-cccCCCCCccEEEecc-cCCCcCC
Q 045021          271 GIYRCERLEALP-KGLHNLKSLKKLRIGG-KLPSLEE  305 (461)
Q Consensus       271 ~l~~c~~~~~~~-~~~~~l~~L~~L~l~~-~~~~l~~  305 (461)
                      .+.+  .++.++ .+|.+|++|+.+++.+ .+..++.
T Consensus       280 ~l~~--~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~  314 (329)
T 3sb4_A          280 ELPA--SVTAIEFGAFMGCDNLRYVLATGDKITTLGD  314 (329)
T ss_dssp             EECT--TCCEECTTTTTTCTTEEEEEECSSCCCEECT
T ss_pred             EEcc--cceEEchhhhhCCccCCEEEeCCCccCccch
Confidence            6655  344443 3566666666666644 4444443

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.15  E-value=2.9e-10  Score=100.17  Aligned_cols=146  Identities=17%  Similarity=0.248  Sum_probs=112.0

Q ss_pred             cceEeeccCccccccccccCCCCCccEEEecc-cCCCcCC---CCCCCCcceEEeecCchhhHHhhhhcccCCCCcCEEE
Q 045021          267 LSKLGIYRCERLEALPKGLHNLKSLKKLRIGG-KLPSLEE---DGLPTNLHFLKIERNMEIWKSMIERGFHKFSSLRHLT  342 (461)
Q Consensus       267 L~~L~l~~c~~~~~~~~~~~~l~~L~~L~l~~-~~~~l~~---~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~  342 (461)
                      -+++++++ ..++.+|..+  .+.+++|++++ .+..++.   ...+++|++|++++|. ++. .....+..+++|++|+
T Consensus        13 ~~~l~~s~-n~l~~iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~-i~~-i~~~~~~~l~~L~~L~   87 (220)
T 2v70_A           13 GTTVDCSN-QKLNKIPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNK-ITD-IEEGAFEGASGVNEIL   87 (220)
T ss_dssp             TTEEECCS-SCCSSCCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSC-CCE-ECTTTTTTCTTCCEEE
T ss_pred             CCEeEeCC-CCcccCccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCc-CCE-ECHHHhCCCCCCCEEE
Confidence            46788877 4567777644  34678999999 7777643   2457899999999987 332 2333578899999999


Q ss_pred             EecCCCcccccCccccccCCCCCCCCCcceeecCCCCCCccc-ccchhhccCCcEEEecCCCCCcccCCCCC--cccccE
Q 045021          343 IEGCDDDMVSFPPEDRRLGTTLPLPASLASLTIGDFPNLERL-SSSIVDLQNLKYLKLYDCPKLKYFSEKGL--PSSLLR  419 (461)
Q Consensus       343 l~~~~~~~~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i-~~~~~~~~~L~~L~l~~C~~l~~~~~~~~--~~~L~~  419 (461)
                      +++|  .+..++...+      ..+++|++|++++ +.+..+ +..+..+++|++|++++ ++++.++...+  .++|++
T Consensus        88 Ls~N--~l~~~~~~~~------~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~  157 (220)
T 2v70_A           88 LTSN--RLENVQHKMF------KGLESLKTLMLRS-NRITCVGNDSFIGLSSVRLLSLYD-NQITTVAPGAFDTLHSLST  157 (220)
T ss_dssp             CCSS--CCCCCCGGGG------TTCSSCCEEECTT-SCCCCBCTTSSTTCTTCSEEECTT-SCCCCBCTTTTTTCTTCCE
T ss_pred             CCCC--ccCccCHhHh------cCCcCCCEEECCC-CcCCeECHhHcCCCccCCEEECCC-CcCCEECHHHhcCCCCCCE
Confidence            9998  7887777545      3678999999999 577766 47788999999999999 88888855433  689999


Q ss_pred             eeccCCch
Q 045021          420 LYIDECPL  427 (461)
Q Consensus       420 L~i~~c~~  427 (461)
                      |++++++.
T Consensus       158 L~L~~N~l  165 (220)
T 2v70_A          158 LNLLANPF  165 (220)
T ss_dssp             EECCSCCE
T ss_pred             EEecCcCC
Confidence            99998863

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.15  E-value=4e-13  Score=135.21  Aligned_cols=196  Identities=13%  Similarity=0.085  Sum_probs=115.0

Q ss_pred             CCccEEEEecCCchhhhHHhhcCCCccceeecccccc-------------ceecccccCCCCCccEEE-ecCCCCCccCC
Q 045021          193 PSLKSLNVWSCSKLESIAERLDNNTSLEMISILWCEN-------------LKFLPSGLHNLRQLQEIQ-LWGCENLVSFP  258 (461)
Q Consensus       193 ~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~-------------~~~~~~~~~~l~~L~~L~-l~~~~~l~~l~  258 (461)
                      ++|+.|++++ ..++.+|..++.+++|+.|+++++..             ....|..++.+++|+.|+ ++.+ .+    
T Consensus       349 ~~L~~L~Ls~-n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n-~~----  422 (567)
T 1dce_A          349 EQLFRCELSV-EKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAA-YL----  422 (567)
T ss_dssp             TTSSSCCCCH-HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHH-HH----
T ss_pred             ccceeccCCh-hhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhc-cc----
Confidence            5678888887 46777888888888888888765531             222344455555666655 3322 11    


Q ss_pred             CCCCCCCCcceEeeccCccccccccccCCCCCccEEEecc-cCCCcCCCCCCCCcceEEeecCchhhHHhhhhcccCCCC
Q 045021          259 EGGLPCAKLSKLGIYRCERLEALPKGLHNLKSLKKLRIGG-KLPSLEEDGLPTNLHFLKIERNMEIWKSMIERGFHKFSS  337 (461)
Q Consensus       259 ~~~~~~~~L~~L~l~~c~~~~~~~~~~~~l~~L~~L~l~~-~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~  337 (461)
                            ..|+.+.+.++ .++.++.     ..|+.|++++ .+..+|....+++|+.|++++|. ++ ..+ ..+..+++
T Consensus       423 ------~~L~~l~l~~n-~i~~l~~-----~~L~~L~Ls~n~l~~lp~~~~l~~L~~L~Ls~N~-l~-~lp-~~~~~l~~  487 (567)
T 1dce_A          423 ------DDLRSKFLLEN-SVLKMEY-----ADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNR-LR-ALP-PALAALRC  487 (567)
T ss_dssp             ------HHHHHHHHHHH-HHHHHHH-----TTCSEEECTTSCCSSCCCGGGGTTCCEEECCSSC-CC-CCC-GGGGGCTT
T ss_pred             ------chhhhhhhhcc-cccccCc-----cCceEEEecCCCCCCCcCccccccCcEeecCccc-cc-ccc-hhhhcCCC
Confidence                  12222222221 1222221     1355666666 55555544445566666666665 22 122 24667778


Q ss_pred             cCEEEEecCCCcccccCccccccCCCCCCCCCcceeecCCCCCCccc--ccchhhccCCcEEEecCCCCCcccCCCCC--
Q 045021          338 LRHLTIEGCDDDMVSFPPEDRRLGTTLPLPASLASLTIGDFPNLERL--SSSIVDLQNLKYLKLYDCPKLKYFSEKGL--  413 (461)
Q Consensus       338 L~~L~l~~~~~~~~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i--~~~~~~~~~L~~L~l~~C~~l~~~~~~~~--  413 (461)
                      |+.|++++|  .+..+| . +      ..+++|+.|++++ +.+..+  |..+..+++|+.|++++ +.++.+|....  
T Consensus       488 L~~L~Ls~N--~l~~lp-~-l------~~l~~L~~L~Ls~-N~l~~~~~p~~l~~l~~L~~L~L~~-N~l~~~~~~~~~l  555 (567)
T 1dce_A          488 LEVLQASDN--ALENVD-G-V------ANLPRLQELLLCN-NRLQQSAAIQPLVSCPRLVLLNLQG-NSLCQEEGIQERL  555 (567)
T ss_dssp             CCEEECCSS--CCCCCG-G-G------TTCSSCCEEECCS-SCCCSSSTTGGGGGCTTCCEEECTT-SGGGGSSSCTTHH
T ss_pred             CCEEECCCC--CCCCCc-c-c------CCCCCCcEEECCC-CCCCCCCCcHHHhcCCCCCEEEecC-CcCCCCccHHHHH
Confidence            888888876  666666 2 4      2567788888887 466666  67777788888888887 66776655221  


Q ss_pred             ---cccccEee
Q 045021          414 ---PSSLLRLY  421 (461)
Q Consensus       414 ---~~~L~~L~  421 (461)
                         +++|+.|+
T Consensus       556 ~~~lp~L~~L~  566 (567)
T 1dce_A          556 AEMLPSVSSIL  566 (567)
T ss_dssp             HHHCTTCSEEE
T ss_pred             HHHCcccCccC
Confidence               45666664

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.13  E-value=4.2e-10  Score=105.72  Aligned_cols=80  Identities=14%  Similarity=0.120  Sum_probs=55.7

Q ss_pred             CCCCcCEEEEecCCCcccccCccccccCCCCCCCCCcceeecCCCCCCcccc-cchhhccCCc-EEEecCCCCCcccCCC
Q 045021          334 KFSSLRHLTIEGCDDDMVSFPPEDRRLGTTLPLPASLASLTIGDFPNLERLS-SSIVDLQNLK-YLKLYDCPKLKYFSEK  411 (461)
Q Consensus       334 ~l~~L~~L~l~~~~~~~~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~-~~~~~~~~L~-~L~l~~C~~l~~~~~~  411 (461)
                      .+++|+++++.+|  ++..++..++      ..+++|++|++.+  +++.|+ ..|..|++|+ .+.+.+  +++.++..
T Consensus       224 ~~~~L~~l~L~~n--~i~~I~~~aF------~~~~~L~~l~l~~--ni~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~~  291 (329)
T 3sb4_A          224 YMPNLVSLDISKT--NATTIPDFTF------AQKKYLLKIKLPH--NLKTIGQRVFSNCGRLAGTLELPA--SVTAIEFG  291 (329)
T ss_dssp             HCTTCCEEECTTB--CCCEECTTTT------TTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEEEECT--TCCEECTT
T ss_pred             hcCCCeEEECCCC--CcceecHhhh------hCCCCCCEEECCc--ccceehHHHhhCChhccEEEEEcc--cceEEchh
Confidence            3678888888876  6777777655      3567788888876  366666 4567778887 888875  67777664


Q ss_pred             CC--cccccEeeccCC
Q 045021          412 GL--PSSLLRLYIDEC  425 (461)
Q Consensus       412 ~~--~~~L~~L~i~~c  425 (461)
                      .+  +++|+.+++++.
T Consensus       292 aF~~c~~L~~l~l~~n  307 (329)
T 3sb4_A          292 AFMGCDNLRYVLATGD  307 (329)
T ss_dssp             TTTTCTTEEEEEECSS
T ss_pred             hhhCCccCCEEEeCCC
Confidence            33  567777777543

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.12  E-value=5.3e-10  Score=98.47  Aligned_cols=107  Identities=13%  Similarity=0.061  Sum_probs=53.4

Q ss_pred             hcCCCccceeeccccccceec-ccccCCCCCccEEEecCCCCCccCCC-CCCCCCCcceEeeccCccccccccccCCCCC
Q 045021          213 LDNNTSLEMISILWCENLKFL-PSGLHNLRQLQEIQLWGCENLVSFPE-GGLPCAKLSKLGIYRCERLEALPKGLHNLKS  290 (461)
Q Consensus       213 ~~~l~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~c~~~~~~~~~~~~l~~  290 (461)
                      +..+++|++|+++++. +..+ +..+..+++|++|++++| .+..++. ....+++|++|++++|......|..+..+++
T Consensus        53 ~~~l~~L~~L~L~~N~-i~~i~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~  130 (220)
T 2v70_A           53 FKKLPQLRKINFSNNK-ITDIEEGAFEGASGVNEILLTSN-RLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSS  130 (220)
T ss_dssp             GGGCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSS-CCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTT
T ss_pred             hccCCCCCEEECCCCc-CCEECHHHhCCCCCCCEEECCCC-ccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCcc
Confidence            4445555555555542 3222 234555555555555554 2333332 2333455566665554322222445556666


Q ss_pred             ccEEEecc-cCCCcCCC--CCCCCcceEEeecCc
Q 045021          291 LKKLRIGG-KLPSLEED--GLPTNLHFLKIERNM  321 (461)
Q Consensus       291 L~~L~l~~-~~~~l~~~--~~~~~L~~L~l~~~~  321 (461)
                      |++|++++ .+..++..  ..+++|++|++++|+
T Consensus       131 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~  164 (220)
T 2v70_A          131 VRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANP  164 (220)
T ss_dssp             CSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred             CCEEECCCCcCCEECHHHhcCCCCCCEEEecCcC
Confidence            66666666 45444221  344566666666665

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.12  E-value=5.3e-10  Score=99.15  Aligned_cols=126  Identities=20%  Similarity=0.203  Sum_probs=80.8

Q ss_pred             CCccEEEEecCCchhhhHHhhcCCCccceeeccccccceecc-cccCCCCCccEEEecCCCCCccCCCC-CCCCCCcceE
Q 045021          193 PSLKSLNVWSCSKLESIAERLDNNTSLEMISILWCENLKFLP-SGLHNLRQLQEIQLWGCENLVSFPEG-GLPCAKLSKL  270 (461)
Q Consensus       193 ~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~l~~l~~~-~~~~~~L~~L  270 (461)
                      ++|+.|+++++......+..+..+++|++|++++|. +..++ ..+..+++|+.|++++| .+..++.. ...+++|++|
T Consensus        40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~-l~~i~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~L  117 (229)
T 3e6j_A           40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQ-LGALPVGVFDSLTQLTVLDLGTN-QLTVLPSAVFDRLVHLKEL  117 (229)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEE
T ss_pred             CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCC-CCCcChhhcccCCCcCEEECCCC-cCCccChhHhCcchhhCeE
Confidence            357777777753333335566777788888887763 44444 44577778888888776 45555543 3456677777


Q ss_pred             eeccCccccccccccCCCCCccEEEecc-cCCCcCCC--CCCCCcceEEeecCc
Q 045021          271 GIYRCERLEALPKGLHNLKSLKKLRIGG-KLPSLEED--GLPTNLHFLKIERNM  321 (461)
Q Consensus       271 ~l~~c~~~~~~~~~~~~l~~L~~L~l~~-~~~~l~~~--~~~~~L~~L~l~~~~  321 (461)
                      ++++| .++.+|..+..+++|++|++++ .+..++..  ..+++|++|++++|+
T Consensus       118 ~Ls~N-~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~  170 (229)
T 3e6j_A          118 FMCCN-KLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNP  170 (229)
T ss_dssp             ECCSS-CCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred             eccCC-cccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCC
Confidence            77774 4556776677777777777777 55555532  334566666666655

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.12  E-value=1.9e-10  Score=96.68  Aligned_cols=133  Identities=20%  Similarity=0.224  Sum_probs=67.8

Q ss_pred             CcceEeeccCccc-cccccccCCCCCccEEEecc-cCCCcCCCCCCCCcceEEeecCchhhHHhhhhcccCCCCcCEEEE
Q 045021          266 KLSKLGIYRCERL-EALPKGLHNLKSLKKLRIGG-KLPSLEEDGLPTNLHFLKIERNMEIWKSMIERGFHKFSSLRHLTI  343 (461)
Q Consensus       266 ~L~~L~l~~c~~~-~~~~~~~~~l~~L~~L~l~~-~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l  343 (461)
                      +|++|++++|... ..+|..+..+++|++|++++ .+..++....+++|++|++++|. +.... ...+..+++|++|++
T Consensus        25 ~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~N~-l~~~~-~~~~~~l~~L~~L~L  102 (168)
T 2ell_A           25 AVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENR-IFGGL-DMLAEKLPNLTHLNL  102 (168)
T ss_dssp             SCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCCSSCCCCSSCCEEEEESCC-CCSCC-CHHHHHCTTCCEEEC
T ss_pred             cCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCChhhhccCCCCCEEECcCCc-CchHH-HHHHhhCCCCCEEec
Confidence            4444444443211 13344444455555555555 33333323344555555665555 22111 112345677777777


Q ss_pred             ecCCCcccccCc-cccccCCCCCCCCCcceeecCCCCCCccccc----chhhccCCcEEEecCCCCCcccCC
Q 045021          344 EGCDDDMVSFPP-EDRRLGTTLPLPASLASLTIGDFPNLERLSS----SIVDLQNLKYLKLYDCPKLKYFSE  410 (461)
Q Consensus       344 ~~~~~~~~~i~~-~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~----~~~~~~~L~~L~l~~C~~l~~~~~  410 (461)
                      ++|  .+..++. ..+      ..+++|+.|+++++ .+..++.    .+..+++|++|++.+| .++.+|.
T Consensus       103 s~N--~l~~~~~~~~l------~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~~n-~~~~~~~  164 (168)
T 2ell_A          103 SGN--KLKDISTLEPL------KKLECLKSLDLFNC-EVTNLNDYRESVFKLLPQLTYLDGYDR-EDQEAPD  164 (168)
T ss_dssp             BSS--SCCSSGGGGGG------SSCSCCCEEECCSS-GGGTSTTHHHHHHTTCSSCCEETTEET-TSCBCCS
T ss_pred             cCC--ccCcchhHHHH------hcCCCCCEEEeeCC-cCcchHHHHHHHHHhCccCcEecCCCC-Chhhccc
Confidence            776  5555542 113      24567777777773 5555543    5666777777777773 4444443

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.11  E-value=2e-10  Score=96.62  Aligned_cols=130  Identities=17%  Similarity=0.106  Sum_probs=72.1

Q ss_pred             cCCCccceeeccccccc-eecccccCCCCCccEEEecCCCCCccCCCCCCCCCCcceEeeccCccccccccccCCCCCcc
Q 045021          214 DNNTSLEMISILWCENL-KFLPSGLHNLRQLQEIQLWGCENLVSFPEGGLPCAKLSKLGIYRCERLEALPKGLHNLKSLK  292 (461)
Q Consensus       214 ~~l~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~l~~L~  292 (461)
                      ...++|++|++++|... ..+|..+..+++|+.|++++|. +..+ .....+++|++|++++|.....+|..+..+++|+
T Consensus        21 ~~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~-l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~   98 (168)
T 2ell_A           21 RTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVG-LISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLT   98 (168)
T ss_dssp             SCTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSC-CCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCC
T ss_pred             CCcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCC-CCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCC
Confidence            34567777777776422 2566666777777888877763 4444 4444456777777777543333555555567777


Q ss_pred             EEEecc-cCCCcC---CCCCCCCcceEEeecCchhhHHhh--hhcccCCCCcCEEEEecC
Q 045021          293 KLRIGG-KLPSLE---EDGLPTNLHFLKIERNMEIWKSMI--ERGFHKFSSLRHLTIEGC  346 (461)
Q Consensus       293 ~L~l~~-~~~~l~---~~~~~~~L~~L~l~~~~~l~~~~~--~~~~~~l~~L~~L~l~~~  346 (461)
                      +|++++ .+..++   ....+++|++|++++|. +.....  ...+..+++|++|++++|
T Consensus        99 ~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~~n  157 (168)
T 2ell_A           99 HLNLSGNKLKDISTLEPLKKLECLKSLDLFNCE-VTNLNDYRESVFKLLPQLTYLDGYDR  157 (168)
T ss_dssp             EEECBSSSCCSSGGGGGGSSCSCCCEEECCSSG-GGTSTTHHHHHHTTCSSCCEETTEET
T ss_pred             EEeccCCccCcchhHHHHhcCCCCCEEEeeCCc-CcchHHHHHHHHHhCccCcEecCCCC
Confidence            777666 444443   12334455555555554 211111  113445555555555554

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.10  E-value=8.1e-10  Score=97.26  Aligned_cols=126  Identities=13%  Similarity=0.213  Sum_probs=88.0

Q ss_pred             CccEEEEecCCCCeecccCCCCcchhhhcccCCCCCCccEEEEecCCchhhhHHhhcCCCccceeeccccccceecc-cc
Q 045021          158 LLEKLEIWDCPSLTCIFSKNELPATLESLEVGNQPPSLKSLNVWSCSKLESIAERLDNNTSLEMISILWCENLKFLP-SG  236 (461)
Q Consensus       158 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~  236 (461)
                      +++.|++++ +.++. ++...+...          ++|+.|++.++..-...+..+..+++|++|++++| .+..++ ..
T Consensus        33 ~l~~L~l~~-n~i~~-i~~~~~~~l----------~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~   99 (220)
T 2v9t_B           33 TITEIRLEQ-NTIKV-IPPGAFSPY----------KKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN-KITELPKSL   99 (220)
T ss_dssp             TCCEEECCS-SCCCE-ECTTSSTTC----------TTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS-CCCCCCTTT
T ss_pred             CCCEEECCC-CcCCC-cCHhHhhCC----------CCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC-cCCccCHhH
Confidence            577777777 66666 444444332          56888888775433333567888889999999887 455555 44


Q ss_pred             cCCCCCccEEEecCCCCCccCC-CCCCCCCCcceEeeccCccccccc-cccCCCCCccEEEecc
Q 045021          237 LHNLRQLQEIQLWGCENLVSFP-EGGLPCAKLSKLGIYRCERLEALP-KGLHNLKSLKKLRIGG  298 (461)
Q Consensus       237 ~~~l~~L~~L~l~~~~~l~~l~-~~~~~~~~L~~L~l~~c~~~~~~~-~~~~~l~~L~~L~l~~  298 (461)
                      +..+++|+.|++++| .+..++ .....+++|++|++++|. ++.++ ..+..+++|++|++++
T Consensus       100 f~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~  161 (220)
T 2v9t_B          100 FEGLFSLQLLLLNAN-KINCLRVDAFQDLHNLNLLSLYDNK-LQTIAKGTFSPLRAIQTMHLAQ  161 (220)
T ss_dssp             TTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCS
T ss_pred             ccCCCCCCEEECCCC-CCCEeCHHHcCCCCCCCEEECCCCc-CCEECHHHHhCCCCCCEEEeCC
Confidence            678899999999987 445543 455567789999998864 44444 4688899999999877

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.10  E-value=3.3e-10  Score=107.87  Aligned_cols=125  Identities=22%  Similarity=0.203  Sum_probs=62.5

Q ss_pred             CCccEEEEecCCchhhh-HHhhcCCCccceeeccccccceecc-cccCCCCCccEEEecCCCCCccC-CCCCCCCCCcce
Q 045021          193 PSLKSLNVWSCSKLESI-AERLDNNTSLEMISILWCENLKFLP-SGLHNLRQLQEIQLWGCENLVSF-PEGGLPCAKLSK  269 (461)
Q Consensus       193 ~~L~~L~l~~~~~l~~~-~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~l~~l-~~~~~~~~~L~~  269 (461)
                      ++|+.|++.++ .+..+ +..+..+++|++|++++|. +..++ ..+..+++|+.|++++|. +..+ +.....+++|++
T Consensus        64 ~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~  140 (361)
T 2xot_A           64 TNLHSLLLSHN-HLNFISSEAFVPVPNLRYLDLSSNH-LHTLDEFLFSDLQALEVLLLYNNH-IVVVDRNAFEDMAQLQK  140 (361)
T ss_dssp             TTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCE
T ss_pred             cccCEEECCCC-cCCccChhhccCCCCCCEEECCCCc-CCcCCHHHhCCCcCCCEEECCCCc-ccEECHHHhCCcccCCE
Confidence            34556665553 22222 2345556666666666653 33332 345566666666666653 3333 233444556666


Q ss_pred             EeeccCcccccccccc----CCCCCccEEEecc-cCCCcCCC--CCCCC--cceEEeecCc
Q 045021          270 LGIYRCERLEALPKGL----HNLKSLKKLRIGG-KLPSLEED--GLPTN--LHFLKIERNM  321 (461)
Q Consensus       270 L~l~~c~~~~~~~~~~----~~l~~L~~L~l~~-~~~~l~~~--~~~~~--L~~L~l~~~~  321 (461)
                      |++++| .++.+|..+    ..+++|++|++++ .+..++..  ..++.  ++.|++.+|+
T Consensus       141 L~L~~N-~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~  200 (361)
T 2xot_A          141 LYLSQN-QISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNP  200 (361)
T ss_dssp             EECCSS-CCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSC
T ss_pred             EECCCC-cCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCC
Confidence            666663 344444422    4566666666666 55544421  12222  3556666654

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.06  E-value=2.8e-13  Score=136.39  Aligned_cols=87  Identities=23%  Similarity=0.232  Sum_probs=43.3

Q ss_pred             hcCCCccceeeccccccceecccccCCCCCccEEEecCCCCCccCCCCCCCCCCcceEeeccCcccccc--ccccCCCCC
Q 045021          213 LDNNTSLEMISILWCENLKFLPSGLHNLRQLQEIQLWGCENLVSFPEGGLPCAKLSKLGIYRCERLEAL--PKGLHNLKS  290 (461)
Q Consensus       213 ~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~~~~~--~~~~~~l~~  290 (461)
                      ++.+++|+.|++++| .+..+|..++.+++|+.|++++| .+..+| ....+++|++|++++| .++.+  |..++.+++
T Consensus       459 ~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N-~l~~lp-~l~~l~~L~~L~Ls~N-~l~~~~~p~~l~~l~~  534 (567)
T 1dce_A          459 LEQLLLVTHLDLSHN-RLRALPPALAALRCLEVLQASDN-ALENVD-GVANLPRLQELLLCNN-RLQQSAAIQPLVSCPR  534 (567)
T ss_dssp             GGGGTTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSS-CCCCCG-GGTTCSSCCEEECCSS-CCCSSSTTGGGGGCTT
T ss_pred             ccccccCcEeecCcc-cccccchhhhcCCCCCEEECCCC-CCCCCc-ccCCCCCCcEEECCCC-CCCCCCCcHHHhcCCC
Confidence            444555555555554 33344555555555555555554 333344 3334445555555553 23333  455555556


Q ss_pred             ccEEEecc-cCCCc
Q 045021          291 LKKLRIGG-KLPSL  303 (461)
Q Consensus       291 L~~L~l~~-~~~~l  303 (461)
                      |++|++++ .+..+
T Consensus       535 L~~L~L~~N~l~~~  548 (567)
T 1dce_A          535 LVLLNLQGNSLCQE  548 (567)
T ss_dssp             CCEEECTTSGGGGS
T ss_pred             CCEEEecCCcCCCC
Confidence            66666655 44333

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.04  E-value=4.1e-10  Score=92.58  Aligned_cols=123  Identities=20%  Similarity=0.192  Sum_probs=58.0

Q ss_pred             CcceEeeccCccc-cccccccCCCCCccEEEecc-cCCCcCCCCCCCCcceEEeecCchhhHHhhhhcccCCCCcCEEEE
Q 045021          266 KLSKLGIYRCERL-EALPKGLHNLKSLKKLRIGG-KLPSLEEDGLPTNLHFLKIERNMEIWKSMIERGFHKFSSLRHLTI  343 (461)
Q Consensus       266 ~L~~L~l~~c~~~-~~~~~~~~~l~~L~~L~l~~-~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l  343 (461)
                      +++.|++++|... ..+|..+..+++|++|++++ .+..++....+++|++|++++|. +.... ...+..+++|++|++
T Consensus        18 ~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~-i~~~~-~~~~~~l~~L~~L~l   95 (149)
T 2je0_A           18 DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNR-VSGGL-EVLAEKCPNLTHLNL   95 (149)
T ss_dssp             GCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCCTTCCCCTTCCEEECCSSC-CCSCT-HHHHHHCTTCCEEEC
T ss_pred             cCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCchhhhcCCCCCEEECCCCc-ccchH-HHHhhhCCCCCEEEC
Confidence            3444444443211 13343444445555555544 33333222334455555555554 22111 112344666666666


Q ss_pred             ecCCCcccccC--ccccccCCCCCCCCCcceeecCCCCCCccccc----chhhccCCcEEEec
Q 045021          344 EGCDDDMVSFP--PEDRRLGTTLPLPASLASLTIGDFPNLERLSS----SIVDLQNLKYLKLY  400 (461)
Q Consensus       344 ~~~~~~~~~i~--~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~----~~~~~~~L~~L~l~  400 (461)
                      ++|  .+..++  .. +      ..+++|++|+++++ .+..++.    .+..+++|+.|+++
T Consensus        96 s~N--~i~~~~~~~~-~------~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           96 SGN--KIKDLSTIEP-L------KKLENLKSLDLFNC-EVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             TTS--CCCSHHHHGG-G------GGCTTCCEEECTTC-GGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             CCC--cCCChHHHHH-H------hhCCCCCEEeCcCC-cccchHHHHHHHHHHCCCcccccCC
Confidence            665  444443  22 2      24456666666663 4555443    45566666666654

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.01  E-value=2.5e-08  Score=95.86  Aligned_cols=210  Identities=12%  Similarity=0.126  Sum_probs=125.6

Q ss_pred             CccEEEEecCCchhhhH-HhhcCCCccceeeccccccceecccccCCCCCccEEEecCCCCCccCCC-CCCCCCCcceEe
Q 045021          194 SLKSLNVWSCSKLESIA-ERLDNNTSLEMISILWCENLKFLPSGLHNLRQLQEIQLWGCENLVSFPE-GGLPCAKLSKLG  271 (461)
Q Consensus       194 ~L~~L~l~~~~~l~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~  271 (461)
                      +|+.+.+..  .+..+. .++..+.+|+.+++..+ .+..++...-.+.+|+.+.+..  .+..+.. ....+++|+.+.
T Consensus       158 ~L~~i~lp~--~l~~I~~~aF~~c~~L~~l~l~~n-~l~~I~~~aF~~~~L~~l~lp~--~l~~I~~~aF~~~~~L~~l~  232 (401)
T 4fdw_A          158 TVQEIVFPS--TLEQLKEDIFYYCYNLKKADLSKT-KITKLPASTFVYAGIEEVLLPV--TLKEIGSQAFLKTSQLKTIE  232 (401)
T ss_dssp             CCCEEECCT--TCCEECSSTTTTCTTCCEEECTTS-CCSEECTTTTTTCCCSEEECCT--TCCEECTTTTTTCTTCCCEE
T ss_pred             CceEEEeCC--CccEehHHHhhCcccCCeeecCCC-cceEechhhEeecccCEEEeCC--chheehhhHhhCCCCCCEEe
Confidence            366665554  233332 25666666777766653 3444443222246666666653  2444444 333455677776


Q ss_pred             eccCcccccccc-ccCCCCCccEEEecccCCCcCCC--CCCCCcceEEeecCchh---hHHhhhhcccCCCCcCEEEEec
Q 045021          272 IYRCERLEALPK-GLHNLKSLKKLRIGGKLPSLEED--GLPTNLHFLKIERNMEI---WKSMIERGFHKFSSLRHLTIEG  345 (461)
Q Consensus       272 l~~c~~~~~~~~-~~~~l~~L~~L~l~~~~~~l~~~--~~~~~L~~L~l~~~~~l---~~~~~~~~~~~l~~L~~L~l~~  345 (461)
                      +.+  .++.++. +|.+ .+|+.+.+.+.+..++..  ..+++|+.+.+.++...   ........+..+++|+.+.+.+
T Consensus       233 l~~--~l~~I~~~aF~~-~~L~~i~lp~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~  309 (401)
T 4fdw_A          233 IPE--NVSTIGQEAFRE-SGITTVKLPNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE  309 (401)
T ss_dssp             CCT--TCCEECTTTTTT-CCCSEEEEETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT
T ss_pred             cCC--CccCcccccccc-CCccEEEeCCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC
Confidence            654  2444433 3444 567777775555444433  34567777777665421   0013344678888999998885


Q ss_pred             CCCcccccCccccccCCCCCCCCCcceeecCCCCCCcccc-cchhhccCCcEEEecCCCCCcccCCC---CCcccccEee
Q 045021          346 CDDDMVSFPPEDRRLGTTLPLPASLASLTIGDFPNLERLS-SSIVDLQNLKYLKLYDCPKLKYFSEK---GLPSSLLRLY  421 (461)
Q Consensus       346 ~~~~~~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~-~~~~~~~~L~~L~l~~C~~l~~~~~~---~~~~~L~~L~  421 (461)
                         ++..++..++      ..+++|+.+++..  +++.+. ..|..+ +|+.+.+.+ +.+..++..   +.+..++.|.
T Consensus       310 ---~i~~I~~~aF------~~c~~L~~l~lp~--~l~~I~~~aF~~~-~L~~l~l~~-n~~~~l~~~~F~~~~~~l~~l~  376 (401)
T 4fdw_A          310 ---SIRILGQGLL------GGNRKVTQLTIPA--NVTQINFSAFNNT-GIKEVKVEG-TTPPQVFEKVWYGFPDDITVIR  376 (401)
T ss_dssp             ---TCCEECTTTT------TTCCSCCEEEECT--TCCEECTTSSSSS-CCCEEEECC-SSCCBCCCSSCCCSCTTCCEEE
T ss_pred             ---ceEEEhhhhh------cCCCCccEEEECc--cccEEcHHhCCCC-CCCEEEEcC-CCCcccccccccCCCCCccEEE
Confidence               5777777655      3667899999965  577775 557778 999999988 666766653   3346788888


Q ss_pred             ccC
Q 045021          422 IDE  424 (461)
Q Consensus       422 i~~  424 (461)
                      |-.
T Consensus       377 vp~  379 (401)
T 4fdw_A          377 VPA  379 (401)
T ss_dssp             ECG
T ss_pred             eCH
Confidence            865

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.01  E-value=6e-08  Score=93.18  Aligned_cols=253  Identities=11%  Similarity=0.178  Sum_probs=153.8

Q ss_pred             CCccEEEecCCcCCcccc-ccCCCCCCcCEEEecCCcCcccccC--CCCCCCccEEEEeecCCccccCcccccCCCCccc
Q 045021           29 CRLEYLILRYCKGLVKLP-QSSLSLSSLREIEICRCHSLVSFPE--VALPSKLKKIEIRECDALKSLPEAWMCGTNSSLE  105 (461)
Q Consensus        29 ~~L~~L~l~~~~~l~~l~-~~~~~l~~L~~L~l~~~~~l~~~~~--~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~  105 (461)
                      ..++.+.+-+  .++.++ ..|.++ +|+.+.+..  .++.++.  +.. .+|+.+.+..  .++.++...+.. |++|+
T Consensus       113 ~~l~~i~ip~--~i~~I~~~aF~~~-~L~~i~l~~--~i~~I~~~aF~~-~~L~~i~lp~--~l~~I~~~aF~~-c~~L~  183 (401)
T 4fdw_A          113 KGYNEIILPN--SVKSIPKDAFRNS-QIAKVVLNE--GLKSIGDMAFFN-STVQEIVFPS--TLEQLKEDIFYY-CYNLK  183 (401)
T ss_dssp             SSCSEEECCT--TCCEECTTTTTTC-CCSEEECCT--TCCEECTTTTTT-CCCCEEECCT--TCCEECSSTTTT-CTTCC
T ss_pred             CCccEEEECC--ccCEehHhhcccC-CccEEEeCC--CccEECHHhcCC-CCceEEEeCC--CccEehHHHhhC-cccCC
Confidence            5556666643  234443 245554 577777765  2555554  334 3577777765  366666655543 57777


Q ss_pred             EEEeeCCCCCcccccc-CCCCCccEEecccCCCceEeccCCCcccccccccccCccEEEEecCCCCeecccCCCCcchhh
Q 045021          106 ILKIWSCHSLPYIARV-QLPPSLKRLDISHCDNIRTLTVEDGIQSSSRRYTSYLLEKLEIWDCPSLTCIFSKNELPATLE  184 (461)
Q Consensus       106 ~L~l~~~~~l~~~~~~-~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~  184 (461)
                      .+++.+ +.++.++.. -...+|+.+.+..  .++.++  .....     .+++|+.+.+..  .++. ++...+..   
T Consensus       184 ~l~l~~-n~l~~I~~~aF~~~~L~~l~lp~--~l~~I~--~~aF~-----~~~~L~~l~l~~--~l~~-I~~~aF~~---  247 (401)
T 4fdw_A          184 KADLSK-TKITKLPASTFVYAGIEEVLLPV--TLKEIG--SQAFL-----KTSQLKTIEIPE--NVST-IGQEAFRE---  247 (401)
T ss_dssp             EEECTT-SCCSEECTTTTTTCCCSEEECCT--TCCEEC--TTTTT-----TCTTCCCEECCT--TCCE-ECTTTTTT---
T ss_pred             eeecCC-CcceEechhhEeecccCEEEeCC--chheeh--hhHhh-----CCCCCCEEecCC--CccC-cccccccc---
Confidence            777765 345555544 2246677777763  255555  43322     134677777764  3444 44444433   


Q ss_pred             hcccCCCCCCccEEEEecCCchhhh-HHhhcCCCccceeeccccccc-----eecccccCCCCCccEEEecCCCCCccCC
Q 045021          185 SLEVGNQPPSLKSLNVWSCSKLESI-AERLDNNTSLEMISILWCENL-----KFLPSGLHNLRQLQEIQLWGCENLVSFP  258 (461)
Q Consensus       185 ~~~~~~~~~~L~~L~l~~~~~l~~~-~~~~~~l~~L~~L~l~~~~~~-----~~~~~~~~~l~~L~~L~l~~~~~l~~l~  258 (461)
                              .+|+.+.+..  .+..+ ..++..+++|+.+.+.++...     ..-..+|.++++|+.+.+..  .+..+.
T Consensus       248 --------~~L~~i~lp~--~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~--~i~~I~  315 (401)
T 4fdw_A          248 --------SGITTVKLPN--GVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE--SIRILG  315 (401)
T ss_dssp             --------CCCSEEEEET--TCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT--TCCEEC
T ss_pred             --------CCccEEEeCC--CccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC--ceEEEh
Confidence                    2578888754  34444 337778888888888764221     12346788888999998874  356665


Q ss_pred             C-CCCCCCCcceEeeccCccccccc-cccCCCCCccEEEecc-cCCCcCCC---CCCCCcceEEeecCc
Q 045021          259 E-GGLPCAKLSKLGIYRCERLEALP-KGLHNLKSLKKLRIGG-KLPSLEED---GLPTNLHFLKIERNM  321 (461)
Q Consensus       259 ~-~~~~~~~L~~L~l~~c~~~~~~~-~~~~~l~~L~~L~l~~-~~~~l~~~---~~~~~L~~L~l~~~~  321 (461)
                      . ....|++|+.+.+..  .++.++ .+|.++ +|+.+.+.+ ....+...   +.+.+++.|.+-...
T Consensus       316 ~~aF~~c~~L~~l~lp~--~l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~  381 (401)
T 4fdw_A          316 QGLLGGNRKVTQLTIPA--NVTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAES  381 (401)
T ss_dssp             TTTTTTCCSCCEEEECT--TCCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGG
T ss_pred             hhhhcCCCCccEEEECc--cccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHH
Confidence            5 344467899998865  355553 377888 999999988 55555443   334578889887755

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.00  E-value=4.4e-10  Score=92.40  Aligned_cols=129  Identities=16%  Similarity=0.103  Sum_probs=66.9

Q ss_pred             CCccceeeccccccc-eecccccCCCCCccEEEecCCCCCccCCCCCCCCCCcceEeeccCccccccccccCCCCCccEE
Q 045021          216 NTSLEMISILWCENL-KFLPSGLHNLRQLQEIQLWGCENLVSFPEGGLPCAKLSKLGIYRCERLEALPKGLHNLKSLKKL  294 (461)
Q Consensus       216 l~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~l~~L~~L  294 (461)
                      .++|+.|++++|... +.+|..+..+++|+.|++++| .+..+ .....+++|++|++++|.....+|..+..+++|++|
T Consensus        16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L   93 (149)
T 2je0_A           16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINV-GLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL   93 (149)
T ss_dssp             GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTS-CCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred             CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCC-CCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence            456666776665322 255665666667777777665 33433 333344566666666543322244444445555555


Q ss_pred             EecccCCCcCCCCCCCCcceEEeecCchhhHHhhhhcccCCCCcCEEEEecCCCcccccCc---cccccCCCCCCCCCcc
Q 045021          295 RIGGKLPSLEEDGLPTNLHFLKIERNMEIWKSMIERGFHKFSSLRHLTIEGCDDDMVSFPP---EDRRLGTTLPLPASLA  371 (461)
Q Consensus       295 ~l~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~i~~---~~~~~~~~~~~~~~L~  371 (461)
                      ++                     ++|. +++......+..+++|++|++++|  .+..++.   ..+      ..+++|+
T Consensus        94 ~l---------------------s~N~-i~~~~~~~~~~~l~~L~~L~l~~N--~l~~~~~~~~~~~------~~l~~L~  143 (149)
T 2je0_A           94 NL---------------------SGNK-IKDLSTIEPLKKLENLKSLDLFNC--EVTNLNDYRENVF------KLLPQLT  143 (149)
T ss_dssp             EC---------------------TTSC-CCSHHHHGGGGGCTTCCEEECTTC--GGGGSTTHHHHHH------HHCTTCC
T ss_pred             EC---------------------CCCc-CCChHHHHHHhhCCCCCEEeCcCC--cccchHHHHHHHH------HHCCCcc
Confidence            44                     4444 221111124556666777777665  5555544   112      1455666


Q ss_pred             eeecC
Q 045021          372 SLTIG  376 (461)
Q Consensus       372 ~L~l~  376 (461)
                      .|+++
T Consensus       144 ~L~l~  148 (149)
T 2je0_A          144 YLDGY  148 (149)
T ss_dssp             EETTB
T ss_pred             cccCC
Confidence            66665

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=98.97  E-value=2.6e-08  Score=95.87  Aligned_cols=301  Identities=18%  Similarity=0.144  Sum_probs=168.0

Q ss_pred             cCCCCCCcCEEEecCCcCcccccC--CCCCCCccEEEEeecCCccccCcccccCCCCcccEEEeeCCCCCcccccc--CC
Q 045021           48 SSLSLSSLREIEICRCHSLVSFPE--VALPSKLKKIEIRECDALKSLPEAWMCGTNSSLEILKIWSCHSLPYIARV--QL  123 (461)
Q Consensus        48 ~~~~l~~L~~L~l~~~~~l~~~~~--~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~--~~  123 (461)
                      .|.++.+|+.+.+..  .++.++.  +..+.+|+.+++..  +++.++...+.. +.+|+.+.+..  .++.+...  ..
T Consensus        66 AF~~c~~L~~i~lp~--~i~~I~~~aF~~c~~L~~i~lp~--~l~~I~~~aF~~-c~~L~~i~~p~--~l~~i~~~aF~~  138 (394)
T 4fs7_A           66 AFQGCRKVTEIKIPS--TVREIGEFAFENCSKLEIINIPD--SVKMIGRCTFSG-CYALKSILLPL--MLKSIGVEAFKG  138 (394)
T ss_dssp             TTTTCTTEEEEECCT--TCCEECTTTTTTCTTCCEECCCT--TCCEECTTTTTT-CTTCCCCCCCT--TCCEECTTTTTT
T ss_pred             HhhCCCCceEEEeCC--CccCcchhHhhCCCCCcEEEeCC--CceEccchhhcc-cccchhhcccC--ceeeecceeeec
Confidence            577888888888854  4566655  66778888888764  266666655443 46666655543  23332222  11


Q ss_pred             CCCccEEecccCCCceEeccCCC-cccccccccccCccEEEEecCCCCeecccCCCCcchhhhcccCCCCCCccEEEEec
Q 045021          124 PPSLKRLDISHCDNIRTLTVEDG-IQSSSRRYTSYLLEKLEIWDCPSLTCIFSKNELPATLESLEVGNQPPSLKSLNVWS  202 (461)
Q Consensus       124 ~~~L~~L~l~~~~~~~~l~~~~~-~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~  202 (461)
                      +. +....+.  .....+.  +. +..      +++|+.+.+.+  .+.. ++...+..          |++|+.+.+..
T Consensus       139 ~~-~~~~~~~--~~~~~i~--~~aF~~------c~~L~~i~l~~--~~~~-I~~~~F~~----------c~~L~~i~l~~  194 (394)
T 4fs7_A          139 CD-FKEITIP--EGVTVIG--DEAFAT------CESLEYVSLPD--SMET-LHNGLFSG----------CGKLKSIKLPR  194 (394)
T ss_dssp             CC-CSEEECC--TTCCEEC--TTTTTT------CTTCCEEECCT--TCCE-ECTTTTTT----------CTTCCBCCCCT
T ss_pred             cc-ccccccC--ccccccc--hhhhcc------cCCCcEEecCC--ccce-eccccccC----------CCCceEEEcCC
Confidence            11 1111111  1122222  21 211      34677776653  2333 33333322          24566666644


Q ss_pred             CCchhhhH-HhhcCCCccceeeccccccceecccccCCCCCccEEEecCCCCCccCCC-CCCCCCCcceEeeccCccccc
Q 045021          203 CSKLESIA-ERLDNNTSLEMISILWCENLKFLPSGLHNLRQLQEIQLWGCENLVSFPE-GGLPCAKLSKLGIYRCERLEA  280 (461)
Q Consensus       203 ~~~l~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~c~~~~~  280 (461)
                      .  +..+. ..+..+..|+.+.+...  ...+........+|+.+.+...  +..+.. ....+..++.+.+... ....
T Consensus       195 ~--~~~I~~~~F~~~~~L~~i~~~~~--~~~i~~~~~~~~~l~~i~ip~~--~~~i~~~~f~~~~~l~~~~~~~~-~~~i  267 (394)
T 4fs7_A          195 N--LKIIRDYCFAECILLENMEFPNS--LYYLGDFALSKTGVKNIIIPDS--FTELGKSVFYGCTDLESISIQNN-KLRI  267 (394)
T ss_dssp             T--CCEECTTTTTTCTTCCBCCCCTT--CCEECTTTTTTCCCCEEEECTT--CCEECSSTTTTCSSCCEEEECCT-TCEE
T ss_pred             C--ceEeCchhhccccccceeecCCC--ceEeehhhcccCCCceEEECCC--ceecccccccccccceeEEcCCC-ccee
Confidence            2  33322 25677778887777643  2223333344567888877642  233333 3344667888777652 1222


Q ss_pred             cccccCCCCCccEEEecc-cCCCcCCCCCCCCcceEEeecCchhhHHhhhhcccCCCCcCEEEEecCCCcccccCccccc
Q 045021          281 LPKGLHNLKSLKKLRIGG-KLPSLEEDGLPTNLHFLKIERNMEIWKSMIERGFHKFSSLRHLTIEGCDDDMVSFPPEDRR  359 (461)
Q Consensus       281 ~~~~~~~l~~L~~L~l~~-~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~i~~~~~~  359 (461)
                      ....+..+..++.+.... .+... ....+.+|+.+.+.++-  + ......+..+.+|+++.+..   .+..+...++ 
T Consensus       268 ~~~~F~~~~~l~~~~~~~~~i~~~-~F~~~~~L~~i~l~~~i--~-~I~~~aF~~c~~L~~i~lp~---~v~~I~~~aF-  339 (394)
T 4fs7_A          268 GGSLFYNCSGLKKVIYGSVIVPEK-TFYGCSSLTEVKLLDSV--K-FIGEEAFESCTSLVSIDLPY---LVEEIGKRSF-  339 (394)
T ss_dssp             CSCTTTTCTTCCEEEECSSEECTT-TTTTCTTCCEEEECTTC--C-EECTTTTTTCTTCCEECCCT---TCCEECTTTT-
T ss_pred             eccccccccccceeccCceeeccc-ccccccccccccccccc--c-eechhhhcCCCCCCEEEeCC---cccEEhHHhc-
Confidence            233567777777776655 22111 11345678888776542  2 23334577888899888865   4677776645 


Q ss_pred             cCCCCCCCCCcceeecCCCCCCcccc-cchhhccCCcEEEecC
Q 045021          360 LGTTLPLPASLASLTIGDFPNLERLS-SSIVDLQNLKYLKLYD  401 (461)
Q Consensus       360 ~~~~~~~~~~L~~L~l~~~~~l~~i~-~~~~~~~~L~~L~l~~  401 (461)
                           ...++|+++++..  .++.|. ..|..|++|+.+.+..
T Consensus       340 -----~~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~lp~  375 (394)
T 4fs7_A          340 -----RGCTSLSNINFPL--SLRKIGANAFQGCINLKKVELPK  375 (394)
T ss_dssp             -----TTCTTCCEECCCT--TCCEECTTTBTTCTTCCEEEEEG
T ss_pred             -----cCCCCCCEEEECc--cccEehHHHhhCCCCCCEEEECC
Confidence                 3567889888875  366775 5677888999998864

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=98.96  E-value=6.5e-10  Score=94.22  Aligned_cols=132  Identities=19%  Similarity=0.251  Sum_probs=90.1

Q ss_pred             cCCCCCccEEEecc-cCCCcCCCC-CCCCcceEEeecCchhhHHhhhhcccCCCCcCEEEEecCCCcccccCccccccCC
Q 045021          285 LHNLKSLKKLRIGG-KLPSLEEDG-LPTNLHFLKIERNMEIWKSMIERGFHKFSSLRHLTIEGCDDDMVSFPPEDRRLGT  362 (461)
Q Consensus       285 ~~~l~~L~~L~l~~-~~~~l~~~~-~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~i~~~~~~~~~  362 (461)
                      +..+++|++|++++ .+..++... ..++|++|++++|. ++..   ..+..+++|++|++++|  .+..++...++   
T Consensus        15 ~~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~-l~~~---~~l~~l~~L~~L~Ls~N--~l~~~~~~~~~---   85 (176)
T 1a9n_A           15 YTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNE-IRKL---DGFPLLRRLKTLLVNNN--RICRIGEGLDQ---   85 (176)
T ss_dssp             EECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSC-CCEE---CCCCCCSSCCEEECCSS--CCCEECSCHHH---
T ss_pred             cCCcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCC-CCcc---cccccCCCCCEEECCCC--cccccCcchhh---
Confidence            44556666666666 555554332 23477777777776 3322   25677888888888887  77777654222   


Q ss_pred             CCCCCCCcceeecCCCCCCccccc--chhhccCCcEEEecCCCCCcccCCC-----CCcccccEeeccCCchhHH
Q 045021          363 TLPLPASLASLTIGDFPNLERLSS--SIVDLQNLKYLKLYDCPKLKYFSEK-----GLPSSLLRLYIDECPLIEE  430 (461)
Q Consensus       363 ~~~~~~~L~~L~l~~~~~l~~i~~--~~~~~~~L~~L~l~~C~~l~~~~~~-----~~~~~L~~L~i~~c~~l~~  430 (461)
                         .+++|+.|++++ +.+..++.  .+..+++|+.|++++ +.++.+|..     ...++|++|+++++..-+.
T Consensus        86 ---~l~~L~~L~L~~-N~i~~~~~~~~l~~l~~L~~L~l~~-N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~~~  155 (176)
T 1a9n_A           86 ---ALPDLTELILTN-NSLVELGDLDPLASLKSLTYLCILR-NPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKER  155 (176)
T ss_dssp             ---HCTTCCEEECCS-CCCCCGGGGGGGGGCTTCCEEECCS-SGGGGSTTHHHHHHHHCTTCSEETTEECCHHHH
T ss_pred             ---cCCCCCEEECCC-CcCCcchhhHhhhcCCCCCEEEecC-CCCCCcHhHHHHHHHHCCccceeCCCcCCHHHH
Confidence               567888888888 46777775  677888999999988 667776652     2258899999988865443

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=98.96  E-value=1e-07  Score=91.73  Aligned_cols=305  Identities=15%  Similarity=0.131  Sum_probs=193.5

Q ss_pred             cccccC--CCCCCCccEEEEeecCCccccCcccccCCCCcccEEEeeCCCCCcccccc--CCCCCccEEecccCCCceEe
Q 045021           66 LVSFPE--VALPSKLKKIEIRECDALKSLPEAWMCGTNSSLEILKIWSCHSLPYIARV--QLPPSLKRLDISHCDNIRTL  141 (461)
Q Consensus        66 l~~~~~--~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~--~~~~~L~~L~l~~~~~~~~l  141 (461)
                      +++++.  +..+.+|+.+.+..  .++.++...+.. |++|+.+++..  .++.++..  ..+++|+.+.+..  .+..+
T Consensus        59 VtsIg~~AF~~c~~L~~i~lp~--~i~~I~~~aF~~-c~~L~~i~lp~--~l~~I~~~aF~~c~~L~~i~~p~--~l~~i  131 (394)
T 4fs7_A           59 VVSIGYAAFQGCRKVTEIKIPS--TVREIGEFAFEN-CSKLEIINIPD--SVKMIGRCTFSGCYALKSILLPL--MLKSI  131 (394)
T ss_dssp             EEEECTTTTTTCTTEEEEECCT--TCCEECTTTTTT-CTTCCEECCCT--TCCEECTTTTTTCTTCCCCCCCT--TCCEE
T ss_pred             EeEhHHHHhhCCCCceEEEeCC--CccCcchhHhhC-CCCCcEEEeCC--CceEccchhhcccccchhhcccC--ceeee
Confidence            445555  67788999998864  478887776654 68899998864  35555443  4456666655543  23333


Q ss_pred             ccCCCcccccccccccCccEEEEecCCCCeecccCCCCcchhhhcccCCCCCCccEEEEecCCchhhh-HHhhcCCCccc
Q 045021          142 TVEDGIQSSSRRYTSYLLEKLEIWDCPSLTCIFSKNELPATLESLEVGNQPPSLKSLNVWSCSKLESI-AERLDNNTSLE  220 (461)
Q Consensus       142 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~-~~~~~~l~~L~  220 (461)
                      .  .....      ...+....+.  ..+.. +....+          ..|++|+.+.+.+.  ...+ ...+..+.+|+
T Consensus       132 ~--~~aF~------~~~~~~~~~~--~~~~~-i~~~aF----------~~c~~L~~i~l~~~--~~~I~~~~F~~c~~L~  188 (394)
T 4fs7_A          132 G--VEAFK------GCDFKEITIP--EGVTV-IGDEAF----------ATCESLEYVSLPDS--METLHNGLFSGCGKLK  188 (394)
T ss_dssp             C--TTTTT------TCCCSEEECC--TTCCE-ECTTTT----------TTCTTCCEEECCTT--CCEECTTTTTTCTTCC
T ss_pred             c--ceeee------cccccccccC--ccccc-cchhhh----------cccCCCcEEecCCc--cceeccccccCCCCce
Confidence            3  22221      1112222221  22222 222222          23467888888652  2333 23678889999


Q ss_pred             eeeccccccceec-ccccCCCCCccEEEecCCCCCccCCCCCCCCCCcceEeeccCccccccc-cccCCCCCccEEEecc
Q 045021          221 MISILWCENLKFL-PSGLHNLRQLQEIQLWGCENLVSFPEGGLPCAKLSKLGIYRCERLEALP-KGLHNLKSLKKLRIGG  298 (461)
Q Consensus       221 ~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~~~~~~-~~~~~l~~L~~L~l~~  298 (461)
                      .+.+..+  +..+ ..++.++..|+.+.+..+  ...+........+|+.+.+..  .++.+. ..+..+..|+.+.+..
T Consensus       189 ~i~l~~~--~~~I~~~~F~~~~~L~~i~~~~~--~~~i~~~~~~~~~l~~i~ip~--~~~~i~~~~f~~~~~l~~~~~~~  262 (394)
T 4fs7_A          189 SIKLPRN--LKIIRDYCFAECILLENMEFPNS--LYYLGDFALSKTGVKNIIIPD--SFTELGKSVFYGCTDLESISIQN  262 (394)
T ss_dssp             BCCCCTT--CCEECTTTTTTCTTCCBCCCCTT--CCEECTTTTTTCCCCEEEECT--TCCEECSSTTTTCSSCCEEEECC
T ss_pred             EEEcCCC--ceEeCchhhccccccceeecCCC--ceEeehhhcccCCCceEEECC--CceecccccccccccceeEEcCC
Confidence            9988753  4444 356777888888877653  233334444556889988865  233332 3677889999999877


Q ss_pred             cCCCcCCC--CCCCCcceEEeecCchhhHHhhhhcccCCCCcCEEEEecCCCcccccCccccccCCCCCCCCCcceeecC
Q 045021          299 KLPSLEED--GLPTNLHFLKIERNMEIWKSMIERGFHKFSSLRHLTIEGCDDDMVSFPPEDRRLGTTLPLPASLASLTIG  376 (461)
Q Consensus       299 ~~~~l~~~--~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~i~~~~~~~~~~~~~~~~L~~L~l~  376 (461)
                      ....+...  ..++.++.+......     .+...+..+.+|+.+.+..   .+..+...++      ...++|+++++.
T Consensus       263 ~~~~i~~~~F~~~~~l~~~~~~~~~-----i~~~~F~~~~~L~~i~l~~---~i~~I~~~aF------~~c~~L~~i~lp  328 (394)
T 4fs7_A          263 NKLRIGGSLFYNCSGLKKVIYGSVI-----VPEKTFYGCSSLTEVKLLD---SVKFIGEEAF------ESCTSLVSIDLP  328 (394)
T ss_dssp             TTCEECSCTTTTCTTCCEEEECSSE-----ECTTTTTTCTTCCEEEECT---TCCEECTTTT------TTCTTCCEECCC
T ss_pred             CcceeeccccccccccceeccCcee-----ecccccccccccccccccc---ccceechhhh------cCCCCCCEEEeC
Confidence            33333332  345677777765543     2333577889999999976   4777777655      366799999997


Q ss_pred             CCCCCcccc-cchhhccCCcEEEecCCCCCcccCCCCC--cccccEeeccC
Q 045021          377 DFPNLERLS-SSIVDLQNLKYLKLYDCPKLKYFSEKGL--PSSLLRLYIDE  424 (461)
Q Consensus       377 ~~~~l~~i~-~~~~~~~~L~~L~l~~C~~l~~~~~~~~--~~~L~~L~i~~  424 (461)
                      +  .++.|. ..|..|.+|+.+.+..  +++.++....  +++|+.+++..
T Consensus       329 ~--~v~~I~~~aF~~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~lp~  375 (394)
T 4fs7_A          329 Y--LVEEIGKRSFRGCTSLSNINFPL--SLRKIGANAFQGCINLKKVELPK  375 (394)
T ss_dssp             T--TCCEECTTTTTTCTTCCEECCCT--TCCEECTTTBTTCTTCCEEEEEG
T ss_pred             C--cccEEhHHhccCCCCCCEEEECc--cccEehHHHhhCCCCCCEEEECC
Confidence            5  577776 5678899999999975  4888877544  57899998854

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=98.91  E-value=5.3e-09  Score=89.87  Aligned_cols=125  Identities=17%  Similarity=0.219  Sum_probs=71.9

Q ss_pred             cceEeeccCccccccccccCCCCCccEEEecc-cCCCcCCC---CCCCCcceEEeecCchhhHHhhhhcccCCCCcCEEE
Q 045021          267 LSKLGIYRCERLEALPKGLHNLKSLKKLRIGG-KLPSLEED---GLPTNLHFLKIERNMEIWKSMIERGFHKFSSLRHLT  342 (461)
Q Consensus       267 L~~L~l~~c~~~~~~~~~~~~l~~L~~L~l~~-~~~~l~~~---~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~  342 (461)
                      -+++++++ ..++.+|..+.  ++|++|++++ .+..++..   ..+++|++|++++|. ++. .....+..+++|++|+
T Consensus        10 ~~~l~~s~-~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~-l~~-~~~~~~~~l~~L~~L~   84 (192)
T 1w8a_A           10 GTTVDCTG-RGLKEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQ-LTG-IEPNAFEGASHIQELQ   84 (192)
T ss_dssp             TTEEECTT-SCCSSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSC-CCC-BCTTTTTTCTTCCEEE
T ss_pred             CCEEEcCC-CCcCcCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCC-CCC-cCHhHcCCcccCCEEE
Confidence            36667666 34566665433  2777777777 65555532   345667777777665 221 1122456666777777


Q ss_pred             EecCCCcccccCccccccCCCCCCCCCcceeecCCCCCCccc-ccchhhccCCcEEEecCCCCCc
Q 045021          343 IEGCDDDMVSFPPEDRRLGTTLPLPASLASLTIGDFPNLERL-SSSIVDLQNLKYLKLYDCPKLK  406 (461)
Q Consensus       343 l~~~~~~~~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i-~~~~~~~~~L~~L~l~~C~~l~  406 (461)
                      +++|  .+..++...+      ..+++|++|++++ +.+..+ +..+..+++|++|++++ +.++
T Consensus        85 Ls~N--~l~~~~~~~~------~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~-N~l~  139 (192)
T 1w8a_A           85 LGEN--KIKEISNKMF------LGLHQLKTLNLYD-NQISCVMPGSFEHLNSLTSLNLAS-NPFN  139 (192)
T ss_dssp             CCSC--CCCEECSSSS------TTCTTCCEEECCS-SCCCEECTTSSTTCTTCCEEECTT-CCBC
T ss_pred             CCCC--cCCccCHHHh------cCCCCCCEEECCC-CcCCeeCHHHhhcCCCCCEEEeCC-CCcc
Confidence            7766  5555554423      2456677777776 345443 45566666777777766 4443

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=98.90  E-value=2.3e-09  Score=90.83  Aligned_cols=102  Identities=18%  Similarity=0.129  Sum_probs=76.7

Q ss_pred             CCccEEEecCCcCCccccccCCCCCCcCEEEecCCcCcccccCCCCCCCccEEEEeecCCccccCccc-ccCCCCcccEE
Q 045021           29 CRLEYLILRYCKGLVKLPQSSLSLSSLREIEICRCHSLVSFPEVALPSKLKKIEIRECDALKSLPEAW-MCGTNSSLEIL  107 (461)
Q Consensus        29 ~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~-~~~~~~~L~~L  107 (461)
                      ++|++|+++++ .+..++......++|++|++++| .+..++.++.+++|++|+++++. +..+|..+ ...  ++|+.|
T Consensus        19 ~~L~~L~l~~n-~l~~i~~~~~~~~~L~~L~Ls~N-~l~~~~~l~~l~~L~~L~Ls~N~-l~~~~~~~~~~l--~~L~~L   93 (176)
T 1a9n_A           19 VRDRELDLRGY-KIPVIENLGATLDQFDAIDFSDN-EIRKLDGFPLLRRLKTLLVNNNR-ICRIGEGLDQAL--PDLTEL   93 (176)
T ss_dssp             TSCEEEECTTS-CCCSCCCGGGGTTCCSEEECCSS-CCCEECCCCCCSSCCEEECCSSC-CCEECSCHHHHC--TTCCEE
T ss_pred             CCceEEEeeCC-CCchhHHhhhcCCCCCEEECCCC-CCCcccccccCCCCCEEECCCCc-ccccCcchhhcC--CCCCEE
Confidence            88999999985 46777653334459999999997 56667668889999999999976 77777655 444  889999


Q ss_pred             EeeCCCCCccccc---cCCCCCccEEecccCC
Q 045021          108 KIWSCHSLPYIAR---VQLPPSLKRLDISHCD  136 (461)
Q Consensus       108 ~l~~~~~l~~~~~---~~~~~~L~~L~l~~~~  136 (461)
                      +++++ .++.++.   ...+++|++|+++++.
T Consensus        94 ~L~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~  124 (176)
T 1a9n_A           94 ILTNN-SLVELGDLDPLASLKSLTYLCILRNP  124 (176)
T ss_dssp             ECCSC-CCCCGGGGGGGGGCTTCCEEECCSSG
T ss_pred             ECCCC-cCCcchhhHhhhcCCCCCEEEecCCC
Confidence            99884 5566654   3566778888887765

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=98.88  E-value=1.1e-08  Score=87.93  Aligned_cols=104  Identities=15%  Similarity=0.231  Sum_probs=51.5

Q ss_pred             CCcceEEeecCchhhHHhhhhcccCCCCcCEEEEecCCCcccccCccccccCCCCCCCCCcceeecCCCCCCcccc-cch
Q 045021          310 TNLHFLKIERNMEIWKSMIERGFHKFSSLRHLTIEGCDDDMVSFPPEDRRLGTTLPLPASLASLTIGDFPNLERLS-SSI  388 (461)
Q Consensus       310 ~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~-~~~  388 (461)
                      ++|++|++++|. ++ ..+ ..+..+++|++|++++|  .+..++...+      ..+++|++|++++ +.+..++ ..+
T Consensus        31 ~~l~~L~L~~n~-i~-~ip-~~~~~l~~L~~L~Ls~N--~i~~i~~~~f------~~l~~L~~L~Ls~-N~l~~i~~~~f   98 (193)
T 2wfh_A           31 RDVTELYLDGNQ-FT-LVP-KELSNYKHLTLIDLSNN--RISTLSNQSF------SNMTQLLTLILSY-NRLRCIPPRTF   98 (193)
T ss_dssp             TTCCEEECCSSC-CC-SCC-GGGGGCTTCCEEECCSS--CCCCCCTTTT------TTCTTCCEEECCS-SCCCBCCTTTT
T ss_pred             CCCCEEECCCCc-Cc-hhH-HHhhcccCCCEEECCCC--cCCEeCHhHc------cCCCCCCEEECCC-CccCEeCHHHh
Confidence            345555555544 11 111 23455555666666555  4555444323      2445566666665 3455444 235


Q ss_pred             hhccCCcEEEecCCCCCcccCCCCC--cccccEeeccCCc
Q 045021          389 VDLQNLKYLKLYDCPKLKYFSEKGL--PSSLLRLYIDECP  426 (461)
Q Consensus       389 ~~~~~L~~L~l~~C~~l~~~~~~~~--~~~L~~L~i~~c~  426 (461)
                      ..+++|++|++++ +.++.++...+  +++|+.|+++++|
T Consensus        99 ~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~  137 (193)
T 2wfh_A           99 DGLKSLRLLSLHG-NDISVVPEGAFNDLSALSHLAIGANP  137 (193)
T ss_dssp             TTCTTCCEEECCS-SCCCBCCTTTTTTCTTCCEEECCSSC
T ss_pred             CCCCCCCEEECCC-CCCCeeChhhhhcCccccEEEeCCCC
Confidence            5555666666655 55555554322  3555666665543

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=98.85  E-value=1.5e-08  Score=85.79  Aligned_cols=85  Identities=24%  Similarity=0.335  Sum_probs=38.0

Q ss_pred             ccCCCCcCEEEEecCCCcccccCccccccCCCCCCCCCcceeecCCCCCCccccc-chhhccCCcEEEecCCCCCcccCC
Q 045021          332 FHKFSSLRHLTIEGCDDDMVSFPPEDRRLGTTLPLPASLASLTIGDFPNLERLSS-SIVDLQNLKYLKLYDCPKLKYFSE  410 (461)
Q Consensus       332 ~~~l~~L~~L~l~~~~~~~~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~-~~~~~~~L~~L~l~~C~~l~~~~~  410 (461)
                      +..+++|++|++++|  .+..++...+      ..+++|+.|++++ +.+..++. .+..+++|++|++++ +.++.++.
T Consensus        48 ~~~l~~L~~L~l~~n--~l~~~~~~~~------~~l~~L~~L~l~~-N~l~~~~~~~~~~l~~L~~L~l~~-N~l~~~~~  117 (177)
T 2o6r_A           48 FDKLTQLTKLSLSQN--QIQSLPDGVF------DKLTKLTILYLHE-NKLQSLPNGVFDKLTQLKELALDT-NQLKSVPD  117 (177)
T ss_dssp             TTTCTTCSEEECCSS--CCCCCCTTTT------TTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCS-SCCSCCCT
T ss_pred             hcCcccccEEECCCC--cceEeChhHc------cCCCccCEEECCC-CCccccCHHHhhCCcccCEEECcC-CcceEeCH
Confidence            344455555555544  4444443312      1344555555555 24444432 234455555555555 44444444


Q ss_pred             CCC--cccccEeeccCCc
Q 045021          411 KGL--PSSLLRLYIDECP  426 (461)
Q Consensus       411 ~~~--~~~L~~L~i~~c~  426 (461)
                      ..+  .++|++|++++++
T Consensus       118 ~~~~~l~~L~~L~l~~N~  135 (177)
T 2o6r_A          118 GIFDRLTSLQKIWLHTNP  135 (177)
T ss_dssp             TTTTTCTTCCEEECCSSC
T ss_pred             HHhcCCcccCEEEecCCC
Confidence            221  3455555555443

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=98.83  E-value=1.3e-09  Score=113.04  Aligned_cols=110  Identities=20%  Similarity=0.289  Sum_probs=65.6

Q ss_pred             ecccccCCCCCccEEEecCCCCCccCCCCCCCCCCcceEeeccCccccccccccCCCCCccEEEecc-cCCCcCCC-CCC
Q 045021          232 FLPSGLHNLRQLQEIQLWGCENLVSFPEGGLPCAKLSKLGIYRCERLEALPKGLHNLKSLKKLRIGG-KLPSLEED-GLP  309 (461)
Q Consensus       232 ~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~l~~L~~L~l~~-~~~~l~~~-~~~  309 (461)
                      ..+..+..+++|+.|++++| .+..++...+.+++|++|++++| .++.+|..+..+++|++|++++ .+..+|.. ..+
T Consensus       215 ~~~~~~~~l~~L~~L~Ls~n-~l~~l~~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l  292 (727)
T 4b8c_D          215 MPKDSKYDDQLWHALDLSNL-QIFNISANIFKYDFLTRLYLNGN-SLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSC  292 (727)
T ss_dssp             -------CCCCCCEEECTTS-CCSCCCGGGGGCCSCSCCBCTTS-CCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGG
T ss_pred             cChhhhccCCCCcEEECCCC-CCCCCChhhcCCCCCCEEEeeCC-cCcccChhhhCCCCCCEEeCcCCcCCccChhhcCC
Confidence            34556677778888888876 45566665556677888888875 4557777777888888887777 66555543 334


Q ss_pred             CCcceEEeecCchhhHHhhhhcccCCCCcCEEEEecC
Q 045021          310 TNLHFLKIERNMEIWKSMIERGFHKFSSLRHLTIEGC  346 (461)
Q Consensus       310 ~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~  346 (461)
                      ++|++|+|++|. +. ..+. .+..+++|++|++++|
T Consensus       293 ~~L~~L~L~~N~-l~-~lp~-~~~~l~~L~~L~L~~N  326 (727)
T 4b8c_D          293 FQLKYFYFFDNM-VT-TLPW-EFGNLCNLQFLGVEGN  326 (727)
T ss_dssp             TTCSEEECCSSC-CC-CCCS-STTSCTTCCCEECTTS
T ss_pred             CCCCEEECCCCC-CC-ccCh-hhhcCCCccEEeCCCC
Confidence            555555555554 22 1222 2555666666666665

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=98.83  E-value=6.2e-10  Score=115.54  Aligned_cols=109  Identities=19%  Similarity=0.215  Sum_probs=69.1

Q ss_pred             HHhhcCCCccceeeccccccceecccccCCCCCccEEEecCCCCCccCCCCCCCCCCcceEeeccCccccccccccCCCC
Q 045021          210 AERLDNNTSLEMISILWCENLKFLPSGLHNLRQLQEIQLWGCENLVSFPEGGLPCAKLSKLGIYRCERLEALPKGLHNLK  289 (461)
Q Consensus       210 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~l~  289 (461)
                      +..+..+++|+.|++++| .+..++..+..+++|++|++++| .+..+|.....+++|++|++++|. ++.+|..++.++
T Consensus       217 ~~~~~~l~~L~~L~Ls~n-~l~~l~~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~  293 (727)
T 4b8c_D          217 KDSKYDDQLWHALDLSNL-QIFNISANIFKYDFLTRLYLNGN-SLTELPAEIKNLSNLRVLDLSHNR-LTSLPAELGSCF  293 (727)
T ss_dssp             -----CCCCCCEEECTTS-CCSCCCGGGGGCCSCSCCBCTTS-CCSCCCGGGGGGTTCCEEECTTSC-CSSCCSSGGGGT
T ss_pred             hhhhccCCCCcEEECCCC-CCCCCChhhcCCCCCCEEEeeCC-cCcccChhhhCCCCCCEEeCcCCc-CCccChhhcCCC
Confidence            445666677777777765 34456655666777777777776 445666555556677777777753 446666677777


Q ss_pred             CccEEEecc-cCCCcCCC-CCCCCcceEEeecCc
Q 045021          290 SLKKLRIGG-KLPSLEED-GLPTNLHFLKIERNM  321 (461)
Q Consensus       290 ~L~~L~l~~-~~~~l~~~-~~~~~L~~L~l~~~~  321 (461)
                      +|++|++++ .+..+|.. ..+++|++|+|++|.
T Consensus       294 ~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~  327 (727)
T 4b8c_D          294 QLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNP  327 (727)
T ss_dssp             TCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSC
T ss_pred             CCCEEECCCCCCCccChhhhcCCCccEEeCCCCc
Confidence            777777777 66666653 555677777777776

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=98.76  E-value=3.2e-08  Score=84.94  Aligned_cols=103  Identities=17%  Similarity=0.208  Sum_probs=57.7

Q ss_pred             CccEEEEecCCchhhhHH--hhcCCCccceeeccccccceecccccCCCCCccEEEecCCCCCccCCC-CCCCCCCcceE
Q 045021          194 SLKSLNVWSCSKLESIAE--RLDNNTSLEMISILWCENLKFLPSGLHNLRQLQEIQLWGCENLVSFPE-GGLPCAKLSKL  270 (461)
Q Consensus       194 ~L~~L~l~~~~~l~~~~~--~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L  270 (461)
                      +++.|++.++ .+..++.  .+..+++|++|++++|......|..+..+++|+.|++++| .+..++. ....+++|++|
T Consensus        30 ~l~~L~l~~n-~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L  107 (192)
T 1w8a_A           30 HTTELLLNDN-ELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN-KIKEISNKMFLGLHQLKTL  107 (192)
T ss_dssp             TCSEEECCSC-CCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC-CCCEECSSSSTTCTTCCEE
T ss_pred             CCCEEECCCC-cCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC-cCCccCHHHhcCCCCCCEE
Confidence            4666776664 3333332  3566677777777766333333566666777777777776 3343333 23445566666


Q ss_pred             eeccCccccccccccCCCCCccEEEecc
Q 045021          271 GIYRCERLEALPKGLHNLKSLKKLRIGG  298 (461)
Q Consensus       271 ~l~~c~~~~~~~~~~~~l~~L~~L~l~~  298 (461)
                      ++++|......|..+..+++|++|++++
T Consensus       108 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~  135 (192)
T 1w8a_A          108 NLYDNQISCVMPGSFEHLNSLTSLNLAS  135 (192)
T ss_dssp             ECCSSCCCEECTTSSTTCTTCCEEECTT
T ss_pred             ECCCCcCCeeCHHHhhcCCCCCEEEeCC
Confidence            6666543333344555566666655544

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=98.75  E-value=1.4e-10  Score=100.43  Aligned_cols=60  Identities=17%  Similarity=0.112  Sum_probs=26.5

Q ss_pred             ccCCCCCccEEEecCCCCCccCCCCCCCCCCcceEeeccCccccccccccCCCCCccEEEecc
Q 045021          236 GLHNLRQLQEIQLWGCENLVSFPEGGLPCAKLSKLGIYRCERLEALPKGLHNLKSLKKLRIGG  298 (461)
Q Consensus       236 ~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~l~~L~~L~l~~  298 (461)
                      .+..+++|++|++++| .+..++ ....+++|++|++++| .++.+|..+..+++|++|++++
T Consensus        43 ~~~~l~~L~~L~ls~n-~l~~l~-~~~~l~~L~~L~l~~n-~l~~l~~~~~~~~~L~~L~L~~  102 (198)
T 1ds9_A           43 TLSTLKACKHLALSTN-NIEKIS-SLSGMENLRILSLGRN-LIKKIENLDAVADTLEELWISY  102 (198)
T ss_dssp             HHHHTTTCSEEECSEE-EESCCC-CHHHHTTCCEEEEEEE-EECSCSSHHHHHHHCSEEEEEE
T ss_pred             HHhcCCCCCEEECCCC-CCcccc-ccccCCCCCEEECCCC-CcccccchhhcCCcCCEEECcC
Confidence            4555555555555554 233333 2223344555555443 2333443333334444444444

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=98.74  E-value=5.9e-08  Score=83.32  Aligned_cols=79  Identities=16%  Similarity=0.115  Sum_probs=40.3

Q ss_pred             CccEEEEecCCchhhhHHhhcCCCccceeeccccccceecccccCCCCCccEEEecCCCCCccCCC-CCCCCCCcceEee
Q 045021          194 SLKSLNVWSCSKLESIAERLDNNTSLEMISILWCENLKFLPSGLHNLRQLQEIQLWGCENLVSFPE-GGLPCAKLSKLGI  272 (461)
Q Consensus       194 ~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l  272 (461)
                      +++.|++.++ .+..++..+..+++|++|++++|......+..+..+++|+.|++++| .+..++. ....+++|++|++
T Consensus        32 ~l~~L~L~~n-~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N-~l~~i~~~~f~~l~~L~~L~L  109 (193)
T 2wfh_A           32 DVTELYLDGN-QFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN-RLRCIPPRTFDGLKSLRLLSL  109 (193)
T ss_dssp             TCCEEECCSS-CCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTTTCTTCCEEEC
T ss_pred             CCCEEECCCC-cCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC-ccCEeCHHHhCCCCCCCEEEC
Confidence            4666666663 34444455556666666666655322222344555666666666655 3333332 2333445555555


Q ss_pred             cc
Q 045021          273 YR  274 (461)
Q Consensus       273 ~~  274 (461)
                      ++
T Consensus       110 ~~  111 (193)
T 2wfh_A          110 HG  111 (193)
T ss_dssp             CS
T ss_pred             CC
Confidence            54

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=98.67  E-value=7.8e-10  Score=95.67  Aligned_cols=143  Identities=15%  Similarity=0.209  Sum_probs=103.2

Q ss_pred             CccEEEEecC-CchhhhHHhhcCCCccceeeccccccceecccccCCCCCccEEEecCCCCCccCCCCCCCCCCcceEee
Q 045021          194 SLKSLNVWSC-SKLESIAERLDNNTSLEMISILWCENLKFLPSGLHNLRQLQEIQLWGCENLVSFPEGGLPCAKLSKLGI  272 (461)
Q Consensus       194 ~L~~L~l~~~-~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l  272 (461)
                      .++...+.+. ..++.++..+..+++|++|++++| .+..+| .+..+++|+.|++++| .+..++.....+++|++|++
T Consensus        24 ~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n-~l~~l~-~~~~l~~L~~L~l~~n-~l~~l~~~~~~~~~L~~L~L  100 (198)
T 1ds9_A           24 EAEKVELHGMIPPIEKMDATLSTLKACKHLALSTN-NIEKIS-SLSGMENLRILSLGRN-LIKKIENLDAVADTLEELWI  100 (198)
T ss_dssp             TCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEE-EESCCC-CHHHHTTCCEEEEEEE-EECSCSSHHHHHHHCSEEEE
T ss_pred             chheeEeccccCcHhhhhHHHhcCCCCCEEECCCC-CCcccc-ccccCCCCCEEECCCC-CcccccchhhcCCcCCEEEC
Confidence            3666666553 235556667888999999999987 455577 7888999999999998 56677665455578999999


Q ss_pred             ccCccccccccccCCCCCccEEEecc-cCCCcCC---CCCCCCcceEEeecCchhhHHhh---------hhcccCCCCcC
Q 045021          273 YRCERLEALPKGLHNLKSLKKLRIGG-KLPSLEE---DGLPTNLHFLKIERNMEIWKSMI---------ERGFHKFSSLR  339 (461)
Q Consensus       273 ~~c~~~~~~~~~~~~l~~L~~L~l~~-~~~~l~~---~~~~~~L~~L~l~~~~~l~~~~~---------~~~~~~l~~L~  339 (461)
                      ++| .++.+| .+..+++|++|++++ .+..++.   ...+++|++|++++|. +....+         ...+..+++|+
T Consensus       101 ~~N-~l~~l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~~~~~~~~l~~L~  177 (198)
T 1ds9_A          101 SYN-QIASLS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNP-LYNDYKENNATSEYRIEVVKRLPNLK  177 (198)
T ss_dssp             EEE-ECCCHH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCH-HHHHHHTTTTHHHHHHHHHHHCSSCS
T ss_pred             cCC-cCCcCC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCc-cccccccccchHHHHHHHHHhCCCcE
Confidence            996 566666 578889999999988 6665543   3566788888888886 322211         12356677777


Q ss_pred             EEE
Q 045021          340 HLT  342 (461)
Q Consensus       340 ~L~  342 (461)
                      .|+
T Consensus       178 ~Ld  180 (198)
T 1ds9_A          178 KLD  180 (198)
T ss_dssp             EEC
T ss_pred             EEC
Confidence            775

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=98.63  E-value=2.3e-07  Score=78.33  Aligned_cols=56  Identities=25%  Similarity=0.271  Sum_probs=25.1

Q ss_pred             CccEEEEecCCchhhhH-HhhcCCCccceeeccccccceecc-cccCCCCCccEEEecCC
Q 045021          194 SLKSLNVWSCSKLESIA-ERLDNNTSLEMISILWCENLKFLP-SGLHNLRQLQEIQLWGC  251 (461)
Q Consensus       194 ~L~~L~l~~~~~l~~~~-~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~  251 (461)
                      +|+.|++.++. +..++ ..+..+++|++|+++++ .+..++ ..+..+++|+.|++++|
T Consensus        29 ~l~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N   86 (177)
T 2o6r_A           29 SATRLELESNK-LQSLPHGVFDKLTQLTKLSLSQN-QIQSLPDGVFDKLTKLTILYLHEN   86 (177)
T ss_dssp             TCSEEECCSSC-CCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CCcEEEeCCCc-ccEeCHHHhcCcccccEEECCCC-cceEeChhHccCCCccCEEECCCC
Confidence            35555555532 22222 23344555555555544 232332 22344555555555554

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=98.59  E-value=5.5e-06  Score=79.52  Aligned_cols=98  Identities=13%  Similarity=0.155  Sum_probs=54.1

Q ss_pred             CccEEEecCCcCCccc-cccCCCCCCcCEEEecCC--cCcccccC--CCCCCCccEEEEeecCCccccCcccccCCCCcc
Q 045021           30 RLEYLILRYCKGLVKL-PQSSLSLSSLREIEICRC--HSLVSFPE--VALPSKLKKIEIRECDALKSLPEAWMCGTNSSL  104 (461)
Q Consensus        30 ~L~~L~l~~~~~l~~l-~~~~~~l~~L~~L~l~~~--~~l~~~~~--~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L  104 (461)
                      .|+.+.+-.  .++.+ ...|.+|.+|+.+.+..+  ..++.++.  +..+.+|+.+.+..  .+..++...+.. +.+|
T Consensus        65 ~L~sI~iP~--svt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~--~~~~I~~~aF~~-c~~L  139 (394)
T 4gt6_A           65 VLTSVQIPD--TVTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILD--SVTEIDSEAFHH-CEEL  139 (394)
T ss_dssp             CCCEEEECT--TCCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGT--TCSEECTTTTTT-CTTC
T ss_pred             cCEEEEECC--CeeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCC--ccceehhhhhhh-hccc
Confidence            367777743  24555 335777778888777653  23445544  55566666655533  355555544433 4677


Q ss_pred             cEEEeeCCCCCcccccc--CCCCCccEEeccc
Q 045021          105 EILKIWSCHSLPYIARV--QLPPSLKRLDISH  134 (461)
Q Consensus       105 ~~L~l~~~~~l~~~~~~--~~~~~L~~L~l~~  134 (461)
                      +.+.+..  .++.+...  ..+.+|+.+.+..
T Consensus       140 ~~i~lp~--~~~~I~~~~F~~c~~L~~i~~~~  169 (394)
T 4gt6_A          140 DTVTIPE--GVTSVADGMFSYCYSLHTVTLPD  169 (394)
T ss_dssp             CEEECCT--TCCEECTTTTTTCTTCCEEECCT
T ss_pred             ccccccc--eeeeecccceecccccccccccc
Confidence            7777653  23333332  4455666666653

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=98.55  E-value=1e-05  Score=77.63  Aligned_cols=104  Identities=13%  Similarity=0.157  Sum_probs=60.8

Q ss_pred             ccCCCCCccEEEecccCCCcCCC--CCCCCcceEEeecCchhhHHhhhhcccCCCCcCEEEEecCCCcccccCccccccC
Q 045021          284 GLHNLKSLKKLRIGGKLPSLEED--GLPTNLHFLKIERNMEIWKSMIERGFHKFSSLRHLTIEGCDDDMVSFPPEDRRLG  361 (461)
Q Consensus       284 ~~~~l~~L~~L~l~~~~~~l~~~--~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~i~~~~~~~~  361 (461)
                      +|..+.+|+.+.+.+.+..+...  ..+++|+.+.+...  ++ ..+...+..+.+|+++.+..   ++..+...++   
T Consensus       260 aF~~c~~L~~i~lp~~~~~I~~~aF~~c~~L~~i~l~~~--i~-~I~~~aF~~c~~L~~i~lp~---~v~~I~~~aF---  330 (394)
T 4gt6_A          260 AFDSCAYLASVKMPDSVVSIGTGAFMNCPALQDIEFSSR--IT-ELPESVFAGCISLKSIDIPE---GITQILDDAF---  330 (394)
T ss_dssp             TTTTCSSCCEEECCTTCCEECTTTTTTCTTCCEEECCTT--CC-EECTTTTTTCTTCCEEECCT---TCCEECTTTT---
T ss_pred             eeeecccccEEecccccceecCcccccccccccccCCCc--cc-ccCceeecCCCCcCEEEeCC---cccEehHhHh---
Confidence            45666666666665533333322  23456666666432  11 22333566777777777765   3566666544   


Q ss_pred             CCCCCCCCcceeecCCCCCCcccc-cchhhccCCcEEEecC
Q 045021          362 TTLPLPASLASLTIGDFPNLERLS-SSIVDLQNLKYLKLYD  401 (461)
Q Consensus       362 ~~~~~~~~L~~L~l~~~~~l~~i~-~~~~~~~~L~~L~l~~  401 (461)
                         ....+|+++.+-.  .++.|. ..|..|.+|+.+.+.+
T Consensus       331 ---~~C~~L~~i~ip~--sv~~I~~~aF~~C~~L~~i~~~~  366 (394)
T 4gt6_A          331 ---AGCEQLERIAIPS--SVTKIPESAFSNCTALNNIEYSG  366 (394)
T ss_dssp             ---TTCTTCCEEEECT--TCCBCCGGGGTTCTTCCEEEESS
T ss_pred             ---hCCCCCCEEEECc--ccCEEhHhHhhCCCCCCEEEECC
Confidence               3556777777754  456665 4566777888887766

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=98.48  E-value=7.9e-07  Score=74.79  Aligned_cols=97  Identities=12%  Similarity=0.128  Sum_probs=55.7

Q ss_pred             cEEEecCCcCCccccccCCCCCCcCEEEecCCcCcccccC--CCCCCCccEEEEeecCCccccCcccccCCCCcccEEEe
Q 045021           32 EYLILRYCKGLVKLPQSSLSLSSLREIEICRCHSLVSFPE--VALPSKLKKIEIRECDALKSLPEAWMCGTNSSLEILKI  109 (461)
Q Consensus        32 ~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~--~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l  109 (461)
                      +.+++++ ..+..+|..+.  ++|++|+++++ .+..+++  ++.+++|++|+++++. ++.+|...+.. +++|+.|++
T Consensus        15 ~~l~~~~-n~l~~iP~~~~--~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~~-l~~L~~L~L   88 (174)
T 2r9u_A           15 TLVNCQN-IRLASVPAGIP--TDKQRLWLNNN-QITKLEPGVFDHLVNLQQLYFNSNK-LTAIPTGVFDK-LTQLTQLDL   88 (174)
T ss_dssp             SEEECCS-SCCSSCCSCCC--TTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTT-CTTCCEEEC
T ss_pred             cEEEeCC-CCCCccCCCcC--CCCcEEEeCCC-CccccCHHHhcCCcCCCEEECCCCC-CCccChhHhCC-cchhhEEEC
Confidence            5566666 44566666553  67777777775 4555543  6667777777777754 66666554221 266666666


Q ss_pred             eCCCCCcccccc--CCCCCccEEecccC
Q 045021          110 WSCHSLPYIARV--QLPPSLKRLDISHC  135 (461)
Q Consensus       110 ~~~~~l~~~~~~--~~~~~L~~L~l~~~  135 (461)
                      ++ +.++.++..  ..+++|++|+++++
T Consensus        89 ~~-N~l~~l~~~~~~~l~~L~~L~L~~N  115 (174)
T 2r9u_A           89 ND-NHLKSIPRGAFDNLKSLTHIYLYNN  115 (174)
T ss_dssp             CS-SCCCCCCTTTTTTCTTCSEEECCSS
T ss_pred             CC-CccceeCHHHhccccCCCEEEeCCC
Confidence            66 344444432  34455555555543

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=98.48  E-value=4.4e-07  Score=76.38  Aligned_cols=103  Identities=19%  Similarity=0.292  Sum_probs=61.8

Q ss_pred             EEEecc-cCCCcCCCCCCCCcceEEeecCchhhHHhhhhcccCCCCcCEEEEecCCCcccccCccccccCCCCCCCCCcc
Q 045021          293 KLRIGG-KLPSLEEDGLPTNLHFLKIERNMEIWKSMIERGFHKFSSLRHLTIEGCDDDMVSFPPEDRRLGTTLPLPASLA  371 (461)
Q Consensus       293 ~L~l~~-~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~i~~~~~~~~~~~~~~~~L~  371 (461)
                      .+++++ .+..+|.. .+++|++|++++|. +.. .....+..+++|++|++++|  ++..++...+      ..+++|+
T Consensus        16 ~l~~~~n~l~~iP~~-~~~~L~~L~Ls~N~-l~~-~~~~~~~~l~~L~~L~Ls~N--~l~~i~~~~~------~~l~~L~   84 (174)
T 2r9u_A           16 LVNCQNIRLASVPAG-IPTDKQRLWLNNNQ-ITK-LEPGVFDHLVNLQQLYFNSN--KLTAIPTGVF------DKLTQLT   84 (174)
T ss_dssp             EEECCSSCCSSCCSC-CCTTCSEEECCSSC-CCC-CCTTTTTTCTTCCEEECCSS--CCCCCCTTTT------TTCTTCC
T ss_pred             EEEeCCCCCCccCCC-cCCCCcEEEeCCCC-ccc-cCHHHhcCCcCCCEEECCCC--CCCccChhHh------CCcchhh
Confidence            344444 44444432 23566666666665 221 11224667777788888776  6777766533      2556788


Q ss_pred             eeecCCCCCCcccccc-hhhccCCcEEEecCCCCCccc
Q 045021          372 SLTIGDFPNLERLSSS-IVDLQNLKYLKLYDCPKLKYF  408 (461)
Q Consensus       372 ~L~l~~~~~l~~i~~~-~~~~~~L~~L~l~~C~~l~~~  408 (461)
                      .|++++ +.++.++.. +..+++|++|++.+ +.+...
T Consensus        85 ~L~L~~-N~l~~l~~~~~~~l~~L~~L~L~~-N~~~c~  120 (174)
T 2r9u_A           85 QLDLND-NHLKSIPRGAFDNLKSLTHIYLYN-NPWDCE  120 (174)
T ss_dssp             EEECCS-SCCCCCCTTTTTTCTTCSEEECCS-SCBCTT
T ss_pred             EEECCC-CccceeCHHHhccccCCCEEEeCC-CCcccc
Confidence            888877 567776643 66777888888877 555543

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.47  E-value=5.1e-05  Score=72.29  Aligned_cols=111  Identities=14%  Similarity=0.137  Sum_probs=57.7

Q ss_pred             cCCCCCccEEEecccCCCcCCC--CCCCCcceEEeecCchhhHHhhhhcccCCCCcCEEEEecCCCcccccCccccccCC
Q 045021          285 LHNLKSLKKLRIGGKLPSLEED--GLPTNLHFLKIERNMEIWKSMIERGFHKFSSLRHLTIEGCDDDMVSFPPEDRRLGT  362 (461)
Q Consensus       285 ~~~l~~L~~L~l~~~~~~l~~~--~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~i~~~~~~~~~  362 (461)
                      +..+.+|+.+.+...+..+...  ..+.+|+.+.+...-  . ......+..+++|+++.+.++  .++.+...++    
T Consensus       236 f~~~~~L~~i~lp~~v~~I~~~aF~~~~~l~~i~l~~~i--~-~i~~~aF~~c~~L~~i~l~~~--~i~~I~~~aF----  306 (379)
T 4h09_A          236 FYGMKALDEIAIPKNVTSIGSFLLQNCTALKTLNFYAKV--K-TVPYLLCSGCSNLTKVVMDNS--AIETLEPRVF----  306 (379)
T ss_dssp             TTTCSSCCEEEECTTCCEECTTTTTTCTTCCEEEECCCC--S-EECTTTTTTCTTCCEEEECCT--TCCEECTTTT----
T ss_pred             ccCCccceEEEcCCCccEeCccccceeehhccccccccc--e-ecccccccccccccccccccc--ccceehhhhh----
Confidence            4445555555554433322222  223445555553321  1 112234566677777777664  5666666544    


Q ss_pred             CCCCCCCcceeecCCCCCCcccc-cchhhccCCcEEEecCCCCCcccCC
Q 045021          363 TLPLPASLASLTIGDFPNLERLS-SSIVDLQNLKYLKLYDCPKLKYFSE  410 (461)
Q Consensus       363 ~~~~~~~L~~L~l~~~~~l~~i~-~~~~~~~~L~~L~l~~C~~l~~~~~  410 (461)
                        ....+|+++++..  .++.|. ..|..|.+|+.+.+..  +++.+..
T Consensus       307 --~~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~ip~--~v~~I~~  349 (379)
T 4h09_A          307 --MDCVKLSSVTLPT--ALKTIQVYAFKNCKALSTISYPK--SITLIES  349 (379)
T ss_dssp             --TTCTTCCEEECCT--TCCEECTTTTTTCTTCCCCCCCT--TCCEECT
T ss_pred             --cCCCCCCEEEcCc--cccEEHHHHhhCCCCCCEEEECC--ccCEEch
Confidence              2456677777753  455554 4466677777776643  4555544

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=98.47  E-value=8.7e-07  Score=74.22  Aligned_cols=98  Identities=14%  Similarity=0.141  Sum_probs=54.3

Q ss_pred             ccEEEecCCcCCccccccCCCCCCcCEEEecCCcCcccccC--CCCCCCccEEEEeecCCccccCcccccCCCCcccEEE
Q 045021           31 LEYLILRYCKGLVKLPQSSLSLSSLREIEICRCHSLVSFPE--VALPSKLKKIEIRECDALKSLPEAWMCGTNSSLEILK  108 (461)
Q Consensus        31 L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~--~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~  108 (461)
                      .+++++++ ..+..+|..+.  ++|++|++++| .+..+++  +..+++|++|+++++. ++.++...+.. +++|+.|+
T Consensus        11 ~~~l~~s~-n~l~~ip~~~~--~~l~~L~L~~N-~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~f~~-l~~L~~L~   84 (170)
T 3g39_A           11 GTTVDCSG-KSLASVPTGIP--TTTQVLYLYDN-QITKLEPGVFDRLTQLTRLDLDNNQ-LTVLPAGVFDK-LTQLTQLS   84 (170)
T ss_dssp             TTEEECTT-SCCSSCCSCCC--TTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTT-CTTCCEEE
T ss_pred             CCEEEeCC-CCcCccCccCC--CCCcEEEcCCC-cCCccChhhhcCcccCCEEECCCCC-cCccChhhccC-CCCCCEEE
Confidence            35666666 44566665443  66777777765 4555533  5666777777777654 66665544321 26666666


Q ss_pred             eeCCCCCcccccc--CCCCCccEEecccC
Q 045021          109 IWSCHSLPYIARV--QLPPSLKRLDISHC  135 (461)
Q Consensus       109 l~~~~~l~~~~~~--~~~~~L~~L~l~~~  135 (461)
                      +++ +.++.++..  ..+++|++|+++++
T Consensus        85 L~~-N~l~~~~~~~~~~l~~L~~L~L~~N  112 (170)
T 3g39_A           85 LND-NQLKSIPRGAFDNLKSLTHIWLLNN  112 (170)
T ss_dssp             CCS-SCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CCC-CccCEeCHHHhcCCCCCCEEEeCCC
Confidence            665 344444332  34445555555543

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=98.42  E-value=6.7e-07  Score=74.93  Aligned_cols=103  Identities=19%  Similarity=0.322  Sum_probs=58.2

Q ss_pred             cEEEecc-cCCCcCCCCCCCCcceEEeecCchhhHHhhhhcccCCCCcCEEEEecCCCcccccCccccccCCCCCCCCCc
Q 045021          292 KKLRIGG-KLPSLEEDGLPTNLHFLKIERNMEIWKSMIERGFHKFSSLRHLTIEGCDDDMVSFPPEDRRLGTTLPLPASL  370 (461)
Q Consensus       292 ~~L~l~~-~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~i~~~~~~~~~~~~~~~~L  370 (461)
                      +.+++++ .+..+|.. .+++|++|++++|. +.. .....+..+++|++|++++|  ++..++...+      ..+++|
T Consensus        12 ~~l~~s~n~l~~ip~~-~~~~l~~L~L~~N~-i~~-~~~~~~~~l~~L~~L~Ls~N--~l~~l~~~~f------~~l~~L   80 (170)
T 3g39_A           12 TTVDCSGKSLASVPTG-IPTTTQVLYLYDNQ-ITK-LEPGVFDRLTQLTRLDLDNN--QLTVLPAGVF------DKLTQL   80 (170)
T ss_dssp             TEEECTTSCCSSCCSC-CCTTCSEEECCSSC-CCC-CCTTTTTTCTTCSEEECCSS--CCCCCCTTTT------TTCTTC
T ss_pred             CEEEeCCCCcCccCcc-CCCCCcEEEcCCCc-CCc-cChhhhcCcccCCEEECCCC--CcCccChhhc------cCCCCC
Confidence            3444444 44444432 23456666666654 221 11223566777777777776  6666665433      245677


Q ss_pred             ceeecCCCCCCccccc-chhhccCCcEEEecCCCCCcc
Q 045021          371 ASLTIGDFPNLERLSS-SIVDLQNLKYLKLYDCPKLKY  407 (461)
Q Consensus       371 ~~L~l~~~~~l~~i~~-~~~~~~~L~~L~l~~C~~l~~  407 (461)
                      +.|++++ +.++.++. .+..+++|++|++++ +.++.
T Consensus        81 ~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~-N~~~c  116 (170)
T 3g39_A           81 TQLSLND-NQLKSIPRGAFDNLKSLTHIWLLN-NPWDC  116 (170)
T ss_dssp             CEEECCS-SCCCCCCTTTTTTCTTCCEEECCS-SCBCT
T ss_pred             CEEECCC-CccCEeCHHHhcCCCCCCEEEeCC-CCCCC
Confidence            7777777 46666653 366677777777777 54443

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.35  E-value=7.9e-05  Score=70.96  Aligned_cols=289  Identities=13%  Similarity=0.110  Sum_probs=162.3

Q ss_pred             cCCCCCCcCEEEecCCcCcccccC--CCCCCCccEEEEeecCCccccCcccccCCCCcccEEEeeCCCCCcccccc-CCC
Q 045021           48 SSLSLSSLREIEICRCHSLVSFPE--VALPSKLKKIEIRECDALKSLPEAWMCGTNSSLEILKIWSCHSLPYIARV-QLP  124 (461)
Q Consensus        48 ~~~~l~~L~~L~l~~~~~l~~~~~--~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~  124 (461)
                      |+....+|+.+.+..  .++.++.  +..|.+|+.+.+..  .++.++...+..  .+|+.+.+..  .++.+... -..
T Consensus        41 ~~~~~~~i~~v~ip~--~vt~Ig~~aF~~C~~L~~I~lp~--~v~~Ig~~aF~~--c~l~~i~~~~--~l~~I~~~aF~~  112 (379)
T 4h09_A           41 WYKDRDRISEVRVNS--GITSIGEANFNSCYNMTKVTVAS--TVTSIGDGAFAD--TKLQSYTGME--RVKKFGDYVFQG  112 (379)
T ss_dssp             TGGGGGGCSEEEECT--TEEEECTTTTTTCTTCCEEEECT--TCCEECTTTTTT--CCCCEEEECT--TCCEECTTTTTT
T ss_pred             ccccccCCEEEEeCC--CccChHHHHhhCCCCCCEEEeCC--cceEechhhhcC--CCCceEECCc--eeeEeccceecc
Confidence            566778899999975  5777776  77899999999965  388888877766  4688877753  45555444 122


Q ss_pred             CCccEEecccCCCceEeccCCCcccccccccccCccEEEEecCCCCeecccCCCCcchhhhcccCCCCCCccEEEEecCC
Q 045021          125 PSLKRLDISHCDNIRTLTVEDGIQSSSRRYTSYLLEKLEIWDCPSLTCIFSKNELPATLESLEVGNQPPSLKSLNVWSCS  204 (461)
Q Consensus       125 ~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  204 (461)
                      .+|+.+.+...  +..+.  .....      ..+++.+.+-.  .++. +....+..          +.+++...+....
T Consensus       113 ~~L~~i~lp~~--~~~i~--~~~F~------~~~l~~~~~~~--~v~~-i~~~~f~~----------~~~l~~~~~~~~~  169 (379)
T 4h09_A          113 TDLDDFEFPGA--TTEIG--NYIFY------NSSVKRIVIPK--SVTT-IKDGIGYK----------AENLEKIEVSSNN  169 (379)
T ss_dssp             CCCSEEECCTT--CCEEC--TTTTT------TCCCCEEEECT--TCCE-ECSCTTTT----------CTTCCEEEECTTC
T ss_pred             CCcccccCCCc--ccccc--ccccc------cceeeeeeccc--eeec-cccchhcc----------ccccccccccccc
Confidence            46777777642  34444  33322      22455554432  3333 22222211          1345555554321


Q ss_pred             chhh------------hHHhhcCCCccceeeccccccceecccccCCCCCccEEEecCCCCCccCCC-CCCCCCCcceEe
Q 045021          205 KLES------------IAERLDNNTSLEMISILWCENLKFLPSGLHNLRQLQEIQLWGCENLVSFPE-GGLPCAKLSKLG  271 (461)
Q Consensus       205 ~l~~------------~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~  271 (461)
                      ....            ....+.....+..+.+... ........+..+.+|+.+.+...  +..+.. ....+..|+.+.
T Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~f~~~~~l~~i~~~~~--~~~i~~~~f~~~~~L~~i~  246 (379)
T 4h09_A          170 KNYVAENYVLYNKNKTILESYPAAKTGTEFTIPST-VKTVTAYGFSYGKNLKKITITSG--VTTLGDGAFYGMKALDEIA  246 (379)
T ss_dssp             SSEEEETTEEEETTSSEEEECCTTCCCSEEECCTT-CCEECTTTTTTCSSCSEEECCTT--CCEECTTTTTTCSSCCEEE
T ss_pred             ceeecccceecccccceeccccccccccccccccc-eeEEeecccccccccceeeeccc--eeEEccccccCCccceEEE
Confidence            1110            0012223333444443321 11112334555677777777543  333333 334466788887


Q ss_pred             eccCcccccccc-ccCCCCCccEEEecccCCCcCCC--CCCCCcceEEeecCchhhHHhhhhcccCCCCcCEEEEecCCC
Q 045021          272 IYRCERLEALPK-GLHNLKSLKKLRIGGKLPSLEED--GLPTNLHFLKIERNMEIWKSMIERGFHKFSSLRHLTIEGCDD  348 (461)
Q Consensus       272 l~~c~~~~~~~~-~~~~l~~L~~L~l~~~~~~l~~~--~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~  348 (461)
                      +..  .++.+.. ++..+.+|+.+.+...+..++..  ..+++|+.+.+.++. ++ ......+.++.+|+++.+..   
T Consensus       247 lp~--~v~~I~~~aF~~~~~l~~i~l~~~i~~i~~~aF~~c~~L~~i~l~~~~-i~-~I~~~aF~~c~~L~~i~lp~---  319 (379)
T 4h09_A          247 IPK--NVTSIGSFLLQNCTALKTLNFYAKVKTVPYLLCSGCSNLTKVVMDNSA-IE-TLEPRVFMDCVKLSSVTLPT---  319 (379)
T ss_dssp             ECT--TCCEECTTTTTTCTTCCEEEECCCCSEECTTTTTTCTTCCEEEECCTT-CC-EECTTTTTTCTTCCEEECCT---
T ss_pred             cCC--CccEeCccccceeehhccccccccceeccccccccccccccccccccc-cc-eehhhhhcCCCCCCEEEcCc---
Confidence            755  2444433 66778888888886655555443  445788888886543 21 23334577788888888865   


Q ss_pred             cccccCccccccCCCCCCCCCcceeecCCCCCCcccc
Q 045021          349 DMVSFPPEDRRLGTTLPLPASLASLTIGDFPNLERLS  385 (461)
Q Consensus       349 ~~~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~  385 (461)
                      .+..|...++      ...++|+++.+..  .++.|.
T Consensus       320 ~l~~I~~~aF------~~C~~L~~i~ip~--~v~~I~  348 (379)
T 4h09_A          320 ALKTIQVYAF------KNCKALSTISYPK--SITLIE  348 (379)
T ss_dssp             TCCEECTTTT------TTCTTCCCCCCCT--TCCEEC
T ss_pred             cccEEHHHHh------hCCCCCCEEEECC--ccCEEc
Confidence            4666666544      2556777777753  355554

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.32  E-value=3e-07  Score=76.36  Aligned_cols=63  Identities=16%  Similarity=0.259  Sum_probs=26.8

Q ss_pred             CcCEEEecCCcCccc--ccCCCCCCCccEEEEeecCCccccCcccccCC---CCcccEEEeeCCCCCcc
Q 045021           54 SLREIEICRCHSLVS--FPEVALPSKLKKIEIRECDALKSLPEAWMCGT---NSSLEILKIWSCHSLPY  117 (461)
Q Consensus        54 ~L~~L~l~~~~~l~~--~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~---~~~L~~L~l~~~~~l~~  117 (461)
                      +|++|++++|. +.+  +..+..+++|++|++++|..+++.........   +++|++|++++|..+++
T Consensus        62 ~L~~LDLs~~~-Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD  129 (176)
T 3e4g_A           62 KIQAIDATDSC-IMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTD  129 (176)
T ss_dssp             CEEEEEEESCC-CCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCH
T ss_pred             eEeEEeCcCCC-ccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCH
Confidence            45555555553 221  12244455555555555544444322222110   12455555555544444

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.28  E-value=7.3e-07  Score=84.14  Aligned_cols=60  Identities=23%  Similarity=0.336  Sum_probs=31.4

Q ss_pred             cccCCCCCccEEEecCCCCCccCCCCCCCCCCcceEeeccCcccccccccc--CCCCCccEEEec
Q 045021          235 SGLHNLRQLQEIQLWGCENLVSFPEGGLPCAKLSKLGIYRCERLEALPKGL--HNLKSLKKLRIG  297 (461)
Q Consensus       235 ~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~~~~~~~~~--~~l~~L~~L~l~  297 (461)
                      ..+..+|+|+.|+++++..+ .++..  ..++|++|++..|.........+  ..+|+|++|+++
T Consensus       166 ~ll~~~P~L~~L~L~g~~~l-~l~~~--~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~  227 (362)
T 2ra8_A          166 PVLDAMPLLNNLKIKGTNNL-SIGKK--PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLY  227 (362)
T ss_dssp             HHHHTCTTCCEEEEECCBTC-BCCSC--BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEE
T ss_pred             HHHhcCCCCcEEEEeCCCCc-eeccc--cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEe
Confidence            33455677888888776332 22221  24577777776654211111112  256666666663

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.27  E-value=5.2e-07  Score=74.97  Aligned_cols=89  Identities=11%  Similarity=0.160  Sum_probs=67.8

Q ss_pred             CCccEEEecCCcCCccc-cccCCCCCCcCEEEecCCcCccccc--CCCCC----CCccEEEEeecCCccccCcccccCCC
Q 045021           29 CRLEYLILRYCKGLVKL-PQSSLSLSSLREIEICRCHSLVSFP--EVALP----SKLKKIEIRECDALKSLPEAWMCGTN  101 (461)
Q Consensus        29 ~~L~~L~l~~~~~l~~l-~~~~~~l~~L~~L~l~~~~~l~~~~--~~~~l----~~L~~L~l~~~~~l~~~~~~~~~~~~  101 (461)
                      .+|++|++++|. ++.. -..+.++++|++|+|++|..+++-.  .++.+    ++|++|++++|+.+++-....... +
T Consensus        61 ~~L~~LDLs~~~-Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~-~  138 (176)
T 3e4g_A           61 YKIQAIDATDSC-IMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHH-F  138 (176)
T ss_dssp             CCEEEEEEESCC-CCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGG-C
T ss_pred             ceEeEEeCcCCC-ccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhc-C
Confidence            479999999987 4432 3346899999999999998776432  24443    589999999999888755444332 5


Q ss_pred             CcccEEEeeCCCCCcccc
Q 045021          102 SSLEILKIWSCHSLPYIA  119 (461)
Q Consensus       102 ~~L~~L~l~~~~~l~~~~  119 (461)
                      ++|++|++++|+.+++..
T Consensus       139 ~~L~~L~L~~c~~Itd~g  156 (176)
T 3e4g_A          139 RNLKYLFLSDLPGVKEKE  156 (176)
T ss_dssp             TTCCEEEEESCTTCCCHH
T ss_pred             CCCCEEECCCCCCCCchH
Confidence            999999999999888743

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.20  E-value=2.8e-06  Score=80.07  Aligned_cols=74  Identities=16%  Similarity=0.135  Sum_probs=32.7

Q ss_pred             CCccccccCCCCCCcCEEEecCCcCcccccC--CCCCCCccEEEEeecCCccccCccc-ccCCCCcccEEEeeCCCCCcc
Q 045021           41 GLVKLPQSSLSLSSLREIEICRCHSLVSFPE--VALPSKLKKIEIRECDALKSLPEAW-MCGTNSSLEILKIWSCHSLPY  117 (461)
Q Consensus        41 ~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~--~~~l~~L~~L~l~~~~~l~~~~~~~-~~~~~~~L~~L~l~~~~~l~~  117 (461)
                      ++..+|. ++.+++|++|+|++++.+..+++  ++.+++|++|+++++. +..++... ...  ++|+.|++++ +.++.
T Consensus        20 ~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l--~~L~~L~l~~-N~l~~   94 (347)
T 2ifg_A           20 ALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSG-LRFVAPDAFHFT--PRLSRLNLSF-NALES   94 (347)
T ss_dssp             CCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSC-CCEECTTGGGSC--SCCCEEECCS-SCCSC
T ss_pred             CCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCc-cceeCHHHhcCC--cCCCEEeCCC-Cccce
Confidence            3444444 45555555555543223444443  4445555555555533 44433322 222  4555555544 23444


Q ss_pred             cc
Q 045021          118 IA  119 (461)
Q Consensus       118 ~~  119 (461)
                      ++
T Consensus        95 ~~   96 (347)
T 2ifg_A           95 LS   96 (347)
T ss_dssp             CC
T ss_pred             eC
Confidence            33

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.18  E-value=6.6e-06  Score=77.56  Aligned_cols=162  Identities=17%  Similarity=0.125  Sum_probs=75.0

Q ss_pred             cccCCCCCccEEEecCCCC----Cc-----cCCCCCCCCCCcceEeeccCccccccccccCCCCCccEEEecc-cCCC--
Q 045021          235 SGLHNLRQLQEIQLWGCEN----LV-----SFPEGGLPCAKLSKLGIYRCERLEALPKGLHNLKSLKKLRIGG-KLPS--  302 (461)
Q Consensus       235 ~~~~~l~~L~~L~l~~~~~----l~-----~l~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~l~~L~~L~l~~-~~~~--  302 (461)
                      .+...+++|+.|.+.+...    +.     .+......+|+|+.|.+.+|..+. ++. + .+++|++|++.. .+..  
T Consensus       133 ~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~-l~~-~-~~~~L~~L~L~~~~l~~~~  209 (362)
T 2ra8_A          133 ENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLS-IGK-K-PRPNLKSLEIISGGLPDSV  209 (362)
T ss_dssp             TTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCB-CCS-C-BCTTCSEEEEECSBCCHHH
T ss_pred             HhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCce-ecc-c-cCCCCcEEEEecCCCChHH
Confidence            3455678899998865311    10     111112334577777777653332 222 2 256677777665 2211  


Q ss_pred             cCCC--CCCCCcceEEeecCch-------hhHHhhhhcccCCCCcCEEEEecCCCcccc-cCccccccCCCCCCCCCcce
Q 045021          303 LEED--GLPTNLHFLKIERNME-------IWKSMIERGFHKFSSLRHLTIEGCDDDMVS-FPPEDRRLGTTLPLPASLAS  372 (461)
Q Consensus       303 l~~~--~~~~~L~~L~l~~~~~-------l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-i~~~~~~~~~~~~~~~~L~~  372 (461)
                      +...  ..+|+|++|+|+.+..       +...........+|+|++|.+.+|  .+.. .... +.  . ....++|++
T Consensus       210 l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~--~i~~~~~~~-la--~-a~~~~~L~~  283 (362)
T 2ra8_A          210 VEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDA--EEQNVVVEM-FL--E-SDILPQLET  283 (362)
T ss_dssp             HHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESC--TTHHHHHHH-HH--H-CSSGGGCSE
T ss_pred             HHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCC--CCchHHHHH-HH--h-CccCCCCCE
Confidence            1100  2345677776653211       100001001124667777777665  3221 0000 00  0 013456777


Q ss_pred             eecCCCCCCcc-----cccchhhccCCcEEEecCCCCCcc
Q 045021          373 LTIGDFPNLER-----LSSSIVDLQNLKYLKLYDCPKLKY  407 (461)
Q Consensus       373 L~l~~~~~l~~-----i~~~~~~~~~L~~L~l~~C~~l~~  407 (461)
                      |+++. +.+.+     ++..+..+++|+.|++++| .+..
T Consensus       284 LdLs~-n~L~d~G~~~L~~~L~~l~~L~~L~L~~n-~i~d  321 (362)
T 2ra8_A          284 MDISA-GVLTDEGARLLLDHVDKIKHLKFINMKYN-YLSD  321 (362)
T ss_dssp             EECCS-SCCBHHHHHHHHTTHHHHTTCSEEECCSB-BCCH
T ss_pred             EECCC-CCCChHHHHHHHhhcccCCcceEEECCCC-cCCH
Confidence            77765 34543     2234455666777777663 3443

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.08  E-value=1.3e-05  Score=75.53  Aligned_cols=84  Identities=20%  Similarity=0.199  Sum_probs=67.8

Q ss_pred             hhhhhhhcCCccEEEecCCcCCcccc-ccCCCCCCcCEEEecCCcCcccccC--CCCCCCccEEEEeecCCccccCcccc
Q 045021           21 QQQLCELSCRLEYLILRYCKGLVKLP-QSSLSLSSLREIEICRCHSLVSFPE--VALPSKLKKIEIRECDALKSLPEAWM   97 (461)
Q Consensus        21 l~~l~~~~~~L~~L~l~~~~~l~~l~-~~~~~l~~L~~L~l~~~~~l~~~~~--~~~l~~L~~L~l~~~~~l~~~~~~~~   97 (461)
                      ++.+    ++|++|+|++++.+..++ ..|..+++|++|+|++| .+..+++  +..+++|++|+|+++. +..+|...+
T Consensus        27 l~~~----~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~  100 (347)
T 2ifg_A           27 LPGA----ENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS-GLRFVAPDAFHFTPRLSRLNLSFNA-LESLSWKTV  100 (347)
T ss_dssp             SCSC----SCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSS-CCCEECTTGGGSCSCCCEEECCSSC-CSCCCSTTT
T ss_pred             CCCC----CCeeEEEccCCCCCCCcChhHhccccCCCEEECCCC-ccceeCHHHhcCCcCCCEEeCCCCc-cceeCHHHc
Confidence            5555    889999998656677776 57999999999999997 6777765  7889999999999965 888887766


Q ss_pred             cCCCCcccEEEeeCC
Q 045021           98 CGTNSSLEILKIWSC  112 (461)
Q Consensus        98 ~~~~~~L~~L~l~~~  112 (461)
                      ..  ..|+.|++.++
T Consensus       101 ~~--~~L~~l~l~~N  113 (347)
T 2ifg_A          101 QG--LSLQELVLSGN  113 (347)
T ss_dssp             CS--CCCCEEECCSS
T ss_pred             cc--CCceEEEeeCC
Confidence            55  44899998874

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=97.89  E-value=9.9e-07  Score=83.82  Aligned_cols=157  Identities=17%  Similarity=0.173  Sum_probs=101.7

Q ss_pred             CCCccEEEecCCCCCccC-----CC-CCCCCCCcceEeeccCccccc-cccccCCCCCccEEEecc-cCCC-----cCCC
Q 045021          240 LRQLQEIQLWGCENLVSF-----PE-GGLPCAKLSKLGIYRCERLEA-LPKGLHNLKSLKKLRIGG-KLPS-----LEED  306 (461)
Q Consensus       240 l~~L~~L~l~~~~~l~~l-----~~-~~~~~~~L~~L~l~~c~~~~~-~~~~~~~l~~L~~L~l~~-~~~~-----l~~~  306 (461)
                      ++.|+.|++++|. +...     .. .....++|++|++++|.--.. +......+++|++|++++ .+..     +...
T Consensus        71 ~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~  149 (372)
T 3un9_A           71 LSSLRQLNLAGVR-MTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDL  149 (372)
T ss_dssp             HTTCCEEECTTSC-CCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHH
T ss_pred             HhhCCEEEecCCC-CCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHH
Confidence            4689999999984 3321     11 112335899999999753221 112233467899999999 4432     2111


Q ss_pred             --CCCCCcceEEeecCchhhHHh---hhhcccCCCCcCEEEEecCCCcccccC-----ccccccCCCCCCCCCcceeecC
Q 045021          307 --GLPTNLHFLKIERNMEIWKSM---IERGFHKFSSLRHLTIEGCDDDMVSFP-----PEDRRLGTTLPLPASLASLTIG  376 (461)
Q Consensus       307 --~~~~~L~~L~l~~~~~l~~~~---~~~~~~~l~~L~~L~l~~~~~~~~~i~-----~~~~~~~~~~~~~~~L~~L~l~  376 (461)
                        ...++|++|++++|. +++..   ....+...++|++|++++|  .+....     .. +      ...++|++|+++
T Consensus       150 L~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~L~~L~Ls~N--~l~~~g~~~L~~~-L------~~~~~L~~L~Ls  219 (372)
T 3un9_A          150 LLHDQCQITTLRLSNNP-LTAAGVAVLMEGLAGNTSVTHLSLLHT--GLGDEGLELLAAQ-L------DRNRQLQELNVA  219 (372)
T ss_dssp             HHSTTCCCCEEECCSSC-CHHHHHHHHHHHHHTCSSCCEEECTTS--SCHHHHHHHHHHH-G------GGCSCCCEEECC
T ss_pred             HHhcCCccceeeCCCCC-CChHHHHHHHHHHhcCCCcCEEeCCCC--CCCcHHHHHHHHH-H------hcCCCcCeEECC
Confidence              234689999999997 44322   1223467889999999998  554322     21 2      245689999999


Q ss_pred             CCCCCccc-----ccchhhccCCcEEEecCCCCCcccC
Q 045021          377 DFPNLERL-----SSSIVDLQNLKYLKLYDCPKLKYFS  409 (461)
Q Consensus       377 ~~~~l~~i-----~~~~~~~~~L~~L~l~~C~~l~~~~  409 (461)
                      +| .+.+.     ...+...++|++|++++ +.|+..+
T Consensus       220 ~N-~i~~~g~~~l~~~L~~~~~L~~L~Ls~-N~i~~~g  255 (372)
T 3un9_A          220 YN-GAGDTAALALARAAREHPSLELLHLYF-NELSSEG  255 (372)
T ss_dssp             SS-CCCHHHHHHHHHHHHHCSSCCEEECTT-SSCCHHH
T ss_pred             CC-CCCHHHHHHHHHHHHhCCCCCEEeccC-CCCCHHH
Confidence            96 56543     34556789999999999 6677643

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=97.83  E-value=4.6e-07  Score=86.14  Aligned_cols=15  Identities=13%  Similarity=0.217  Sum_probs=8.4

Q ss_pred             ccCCCCcCEEEEecC
Q 045021          332 FHKFSSLRHLTIEGC  346 (461)
Q Consensus       332 ~~~l~~L~~L~l~~~  346 (461)
                      +...++|++|++++|
T Consensus       207 L~~~~~L~~L~Ls~N  221 (372)
T 3un9_A          207 LDRNRQLQELNVAYN  221 (372)
T ss_dssp             GGGCSCCCEEECCSS
T ss_pred             HhcCCCcCeEECCCC
Confidence            344455666666665

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=96.72  E-value=0.00057  Score=57.72  Aligned_cols=107  Identities=14%  Similarity=0.148  Sum_probs=57.7

Q ss_pred             CCCcceEEeecCchhhHHh---hhhcccCCCCcCEEEEecCCCcccc-----cCccccccCCCCCCCCCcceeecCCCCC
Q 045021          309 PTNLHFLKIERNMEIWKSM---IERGFHKFSSLRHLTIEGCDDDMVS-----FPPEDRRLGTTLPLPASLASLTIGDFPN  380 (461)
Q Consensus       309 ~~~L~~L~l~~~~~l~~~~---~~~~~~~l~~L~~L~l~~~~~~~~~-----i~~~~~~~~~~~~~~~~L~~L~l~~~~~  380 (461)
                      .++|++|++++|..+.+..   ....+...++|++|++++|  .+..     +... +      ...++|++|+++++ .
T Consensus        35 ~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n--~i~~~g~~~l~~~-L------~~n~~L~~L~L~~N-~  104 (185)
T 1io0_A           35 DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGT--RSNDPVAFALAEM-L------KVNNTLKSLNVESN-F  104 (185)
T ss_dssp             CTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTS--CCCHHHHHHHHHH-H------HHCSSCCEEECCSS-C
T ss_pred             CCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCC--CCChHHHHHHHHH-H------HhCCCcCEEECcCC-c
Confidence            3466666666662233221   1123445667777777776  3322     1111 1      12346777777774 4


Q ss_pred             Ccc-----cccchhhccCCcEEEe--cCCCCCcccCCCCC------cccccEeeccCCc
Q 045021          381 LER-----LSSSIVDLQNLKYLKL--YDCPKLKYFSEKGL------PSSLLRLYIDECP  426 (461)
Q Consensus       381 l~~-----i~~~~~~~~~L~~L~l--~~C~~l~~~~~~~~------~~~L~~L~i~~c~  426 (461)
                      +.+     +...+...++|++|++  .+ +.+..-....+      .++|++|++++|.
T Consensus       105 i~~~g~~~l~~~L~~n~~L~~L~L~~~~-N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~  162 (185)
T 1io0_A          105 ISGSGILALVEALQSNTSLIELRIDNQS-QPLGNNVEMEIANMLEKNTTLLKFGYHFTQ  162 (185)
T ss_dssp             CCHHHHHHHHHGGGGCSSCCEEECCCCS-SCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred             CCHHHHHHHHHHHHhCCCceEEEecCCC-CCCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence            543     2355566677888888  44 56655322111      3577788877774

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=96.71  E-value=0.0011  Score=59.28  Aligned_cols=58  Identities=19%  Similarity=0.107  Sum_probs=29.5

Q ss_pred             cCCccEEEecCCcCCccc---cccCCCCCCcCEEEecCCcCcccccCCCCCC--CccEEEEeecC
Q 045021           28 SCRLEYLILRYCKGLVKL---PQSSLSLSSLREIEICRCHSLVSFPEVALPS--KLKKIEIRECD   87 (461)
Q Consensus        28 ~~~L~~L~l~~~~~l~~l---~~~~~~l~~L~~L~l~~~~~l~~~~~~~~l~--~L~~L~l~~~~   87 (461)
                      +++|++|+|+++ .+..+   +..+..+++|+.|+|++| .+.++..+..+.  +|++|++++++
T Consensus       169 l~~L~~L~Ls~N-~l~~l~~l~~~~~~l~~L~~L~Ls~N-~i~~~~~l~~l~~l~L~~L~L~~Np  231 (267)
T 3rw6_A          169 IPELLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNLSGN-ELKSERELDKIKGLKLEELWLDGNS  231 (267)
T ss_dssp             CTTCCEEECTTS-CCCCCGGGTTHHHHSTTCCEEECTTS-CCCSGGGGGGGTTSCCSEEECTTST
T ss_pred             CCCCCEEECCCC-CCCCCccchhHHhhCCCCCEEECCCC-ccCCchhhhhcccCCcceEEccCCc
Confidence            366666666652 33332   333445666666666664 344333322222  56666666655

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=96.52  E-value=0.00092  Score=56.39  Aligned_cols=77  Identities=18%  Similarity=0.194  Sum_probs=44.4

Q ss_pred             CCccEEEecCCcCCc-----cccccCCCCCCcCEEEecCCcCccc-----ccC-CCCCCCccEEEEeecCCccc-----c
Q 045021           29 CRLEYLILRYCKGLV-----KLPQSSLSLSSLREIEICRCHSLVS-----FPE-VALPSKLKKIEIRECDALKS-----L   92 (461)
Q Consensus        29 ~~L~~L~l~~~~~l~-----~l~~~~~~l~~L~~L~l~~~~~l~~-----~~~-~~~l~~L~~L~l~~~~~l~~-----~   92 (461)
                      +.|++|+|++|..+.     .+...+...++|++|+|++|. +.+     +.. +...+.|++|++++|. +.+     +
T Consensus        36 ~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~-i~~~g~~~l~~~L~~n~~L~~L~L~~N~-i~~~g~~~l  113 (185)
T 1io0_A           36 PDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTR-SNDPVAFALAEMLKVNNTLKSLNVESNF-ISGSGILAL  113 (185)
T ss_dssp             TTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSC-CCHHHHHHHHHHHHHCSSCCEEECCSSC-CCHHHHHHH
T ss_pred             CCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCC-CChHHHHHHHHHHHhCCCcCEEECcCCc-CCHHHHHHH
Confidence            778888888762333     234455667778888888764 332     111 3345677777777764 433     2


Q ss_pred             CcccccCCCCcccEEEe
Q 045021           93 PEAWMCGTNSSLEILKI  109 (461)
Q Consensus        93 ~~~~~~~~~~~L~~L~l  109 (461)
                      .......  ++|++|++
T Consensus       114 ~~~L~~n--~~L~~L~L  128 (185)
T 1io0_A          114 VEALQSN--TSLIELRI  128 (185)
T ss_dssp             HHGGGGC--SSCCEEEC
T ss_pred             HHHHHhC--CCceEEEe
Confidence            2222222  56666666

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=96.38  E-value=0.0016  Score=58.18  Aligned_cols=11  Identities=27%  Similarity=0.266  Sum_probs=6.4

Q ss_pred             CcceEEeecCc
Q 045021          311 NLHFLKIERNM  321 (461)
Q Consensus       311 ~L~~L~l~~~~  321 (461)
                      +|++|++.+|+
T Consensus       221 ~L~~L~L~~Np  231 (267)
T 3rw6_A          221 KLEELWLDGNS  231 (267)
T ss_dssp             CCSEEECTTST
T ss_pred             CcceEEccCCc
Confidence            55555555555

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=92.20  E-value=0.23  Score=38.67  Aligned_cols=35  Identities=23%  Similarity=0.301  Sum_probs=22.3

Q ss_pred             CCCCcceeecCCCCCCcccc-cchhhccCCcEEEecC
Q 045021          366 LPASLASLTIGDFPNLERLS-SSIVDLQNLKYLKLYD  401 (461)
Q Consensus       366 ~~~~L~~L~l~~~~~l~~i~-~~~~~~~~L~~L~l~~  401 (461)
                      .+++|+.|++++ +.++.++ ..+..+++|+.|++.+
T Consensus        29 lp~~l~~L~Ls~-N~l~~l~~~~f~~l~~L~~L~L~~   64 (130)
T 3rfe_A           29 FPVDTTELVLTG-NNLTALPPGLLDALPALRTAHLGA   64 (130)
T ss_dssp             CCTTCSEEECTT-SCCSSCCTTTGGGCTTCCEEECCS
T ss_pred             CCcCCCEEECCC-CcCCccChhhhhhccccCEEEecC
Confidence            555677777776 5666665 3345666677777666

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=90.34  E-value=0.42  Score=37.16  Aligned_cols=51  Identities=18%  Similarity=0.158  Sum_probs=39.0

Q ss_pred             eeecCCCCCCc--ccccchhhccCCcEEEecCCCCCcccCCCCC--cccccEeeccCCc
Q 045021          372 SLTIGDFPNLE--RLSSSIVDLQNLKYLKLYDCPKLKYFSEKGL--PSSLLRLYIDECP  426 (461)
Q Consensus       372 ~L~l~~~~~l~--~i~~~~~~~~~L~~L~l~~C~~l~~~~~~~~--~~~L~~L~i~~c~  426 (461)
                      .++-++ ..++  .+|..+.  ++|++|++++ ++|+.++...+  .++|++|+++++|
T Consensus        12 ~v~Cs~-~~L~~~~vP~~lp--~~l~~L~Ls~-N~l~~l~~~~f~~l~~L~~L~L~~NP   66 (130)
T 3rfe_A           12 LVDCGR-RGLTWASLPTAFP--VDTTELVLTG-NNLTALPPGLLDALPALRTAHLGANP   66 (130)
T ss_dssp             EEECCS-SCCCTTTSCSCCC--TTCSEEECTT-SCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred             EEEeCC-CCCccccCCCCCC--cCCCEEECCC-CcCCccChhhhhhccccCEEEecCCC
Confidence            455566 5666  7774332  4799999999 99999988654  5799999999876

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	461
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.86
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.8
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.74
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.72
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.7
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.68
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.67
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.58
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.57
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.54
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.54
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.53
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.5
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.45
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.43
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.42
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.42
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.42
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.41
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.4
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.39
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.36
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.06
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.04
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.03
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.03
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	98.92
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	98.83
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.77
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	98.71
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.65
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.61
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.44
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.43
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.37
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.35
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	96.13
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	95.71
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	95.31
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	95.18
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	93.3
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	92.64

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.86  E-value=8.3e-20  Score=173.89  Aligned_cols=339  Identities=17%  Similarity=0.195  Sum_probs=203.3

Q ss_pred             CCccEEEecCCcCCccccccCCCCCCcCEEEecCCcCcccccCCCCCCCccEEEEeecCCccccCcccccCCCCcccEEE
Q 045021           29 CRLEYLILRYCKGLVKLPQSSLSLSSLREIEICRCHSLVSFPEVALPSKLKKIEIRECDALKSLPEAWMCGTNSSLEILK  108 (461)
Q Consensus        29 ~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~  108 (461)
                      .+|++|+++++ +++.+. .++.+++|++|++++| .++++++++.+++|++|+++++. +..++. +..  +++|+.|+
T Consensus        44 ~~l~~L~l~~~-~I~~l~-gl~~L~nL~~L~Ls~N-~l~~l~~l~~L~~L~~L~L~~n~-i~~i~~-l~~--l~~L~~L~  116 (384)
T d2omza2          44 DQVTTLQADRL-GIKSID-GVEYLNNLTQINFSNN-QLTDITPLKNLTKLVDILMNNNQ-IADITP-LAN--LTNLTGLT  116 (384)
T ss_dssp             TTCCEEECCSS-CCCCCT-TGGGCTTCCEEECCSS-CCCCCGGGTTCTTCCEEECCSSC-CCCCGG-GTT--CTTCCEEE
T ss_pred             CCCCEEECCCC-CCCCcc-ccccCCCCCEEeCcCC-cCCCCccccCCcccccccccccc-cccccc-ccc--cccccccc
Confidence            78899999885 456664 4788899999999987 67888878888999999998876 665543 333  38888888


Q ss_pred             eeCCCCCccccccCCCCCccEEecccCCCceEeccCCCcccccccccccCccEEEEecCCCCeecccCCCCcchhhhccc
Q 045021          109 IWSCHSLPYIARVQLPPSLKRLDISHCDNIRTLTVEDGIQSSSRRYTSYLLEKLEIWDCPSLTCIFSKNELPATLESLEV  188 (461)
Q Consensus       109 l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~  188 (461)
                      ++++ .++..........+......... +..+.  ....     ............. ..... +...           
T Consensus       117 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~-l~~~~--~~~~-----~~~~~~~~~~~~~-~~~~~-~~~~-----------  174 (384)
T d2omza2         117 LFNN-QITDIDPLKNLTNLNRLELSSNT-ISDIS--ALSG-----LTSLQQLSFGNQV-TDLKP-LANL-----------  174 (384)
T ss_dssp             CCSS-CCCCCGGGTTCTTCSEEEEEEEE-ECCCG--GGTT-----CTTCSEEEEEESC-CCCGG-GTTC-----------
T ss_pred             cccc-ccccccccccccccccccccccc-ccccc--cccc-----ccccccccccccc-chhhh-hccc-----------
Confidence            8763 44554444444444444443321 11111  0000     0000011111111 11111 0000           


Q ss_pred             CCCCCCccEEEEecCCchhhhHHhhcCCCccceeeccccccceecccccCCCCCccEEEecCCCCCccCCCCCCCCCCcc
Q 045021          189 GNQPPSLKSLNVWSCSKLESIAERLDNNTSLEMISILWCENLKFLPSGLHNLRQLQEIQLWGCENLVSFPEGGLPCAKLS  268 (461)
Q Consensus       189 ~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~  268 (461)
                          +.........+  ..........+++++.+.++++ .+..++. ...+++|+.|++++| .+..++. ...+++|+
T Consensus       175 ----~~~~~~~~~~~--~~~~~~~~~~l~~~~~l~l~~n-~i~~~~~-~~~~~~L~~L~l~~n-~l~~~~~-l~~l~~L~  244 (384)
T d2omza2         175 ----TTLERLDISSN--KVSDISVLAKLTNLESLIATNN-QISDITP-LGILTNLDELSLNGN-QLKDIGT-LASLTNLT  244 (384)
T ss_dssp             ----TTCCEEECCSS--CCCCCGGGGGCTTCSEEECCSS-CCCCCGG-GGGCTTCCEEECCSS-CCCCCGG-GGGCTTCS
T ss_pred             ----ccccccccccc--ccccccccccccccceeeccCC-ccCCCCc-ccccCCCCEEECCCC-CCCCcch-hhcccccc
Confidence                11222222221  1112224556777788887765 3333332 345678888888876 4444432 23456788


Q ss_pred             eEeeccCccccccccccCCCCCccEEEecc-cCCCcCCCCCCCCcceEEeecCchhhHHhhhhcccCCCCcCEEEEecCC
Q 045021          269 KLGIYRCERLEALPKGLHNLKSLKKLRIGG-KLPSLEEDGLPTNLHFLKIERNMEIWKSMIERGFHKFSSLRHLTIEGCD  347 (461)
Q Consensus       269 ~L~l~~c~~~~~~~~~~~~l~~L~~L~l~~-~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~  347 (461)
                      .+++.+|. ++.++. ++.+++|++|++++ .+..++.....+.++.+.+.+|. +++.   ..+..++++++|++++| 
T Consensus       245 ~L~l~~n~-l~~~~~-~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~~~n~-l~~~---~~~~~~~~l~~L~ls~n-  317 (384)
T d2omza2         245 DLDLANNQ-ISNLAP-LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQ-LEDI---SPISNLKNLTYLTLYFN-  317 (384)
T ss_dssp             EEECCSSC-CCCCGG-GTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSC-CSCC---GGGGGCTTCSEEECCSS-
T ss_pred             hhccccCc-cCCCCc-ccccccCCEeeccCcccCCCCccccccccccccccccc-cccc---cccchhcccCeEECCCC-
Confidence            88888763 555543 67778888888877 66666655666677888877775 2211   13567788888888886 


Q ss_pred             CcccccCccccccCCCCCCCCCcceeecCCCCCCcccccchhhccCCcEEEecCCCCCcccCCCCCcccccEeeccCC
Q 045021          348 DDMVSFPPEDRRLGTTLPLPASLASLTIGDFPNLERLSSSIVDLQNLKYLKLYDCPKLKYFSEKGLPSSLLRLYIDEC  425 (461)
Q Consensus       348 ~~~~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~L~~L~l~~C~~l~~~~~~~~~~~L~~L~i~~c  425 (461)
                       .+..++.  +      ..+++|++|++++| .++.++ .+..+++|++|++++ ++++.++.-.-+++|++|+++++
T Consensus       318 -~l~~l~~--l------~~l~~L~~L~L~~n-~l~~l~-~l~~l~~L~~L~l~~-N~l~~l~~l~~l~~L~~L~L~~N  383 (384)
T d2omza2         318 -NISDISP--V------SSLTKLQRLFFANN-KVSDVS-SLANLTNINWLSAGH-NQISDLTPLANLTRITQLGLNDQ  383 (384)
T ss_dssp             -CCSCCGG--G------GGCTTCCEEECCSS-CCCCCG-GGGGCTTCCEEECCS-SCCCBCGGGTTCTTCSEEECCCE
T ss_pred             -CCCCCcc--c------ccCCCCCEEECCCC-CCCCCh-hHcCCCCCCEEECCC-CcCCCChhhccCCCCCEeeCCCC
Confidence             6666553  2      25678888888885 677774 577788888888877 57777765333578888888763

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.80  E-value=9.3e-18  Score=159.50  Aligned_cols=343  Identities=17%  Similarity=0.135  Sum_probs=230.9

Q ss_pred             CCCCCcCEEEecCCcCcccccCCCCCCCccEEEEeecCCccccCcccccCCCCcccEEEeeCCCCCccccccCCCCCccE
Q 045021           50 LSLSSLREIEICRCHSLVSFPEVALPSKLKKIEIRECDALKSLPEAWMCGTNSSLEILKIWSCHSLPYIARVQLPPSLKR  129 (461)
Q Consensus        50 ~~l~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~  129 (461)
                      ..+.+|++|+++++ .+.++..++.+++|++|+++++. ++.++. +...  ++|++|+++++ .++.++....+++|+.
T Consensus        41 ~~l~~l~~L~l~~~-~I~~l~gl~~L~nL~~L~Ls~N~-l~~l~~-l~~L--~~L~~L~L~~n-~i~~i~~l~~l~~L~~  114 (384)
T d2omza2          41 TDLDQVTTLQADRL-GIKSIDGVEYLNNLTQINFSNNQ-LTDITP-LKNL--TKLVDILMNNN-QIADITPLANLTNLTG  114 (384)
T ss_dssp             HHHTTCCEEECCSS-CCCCCTTGGGCTTCCEEECCSSC-CCCCGG-GTTC--TTCCEEECCSS-CCCCCGGGTTCTTCCE
T ss_pred             HHhCCCCEEECCCC-CCCCccccccCCCCCEEeCcCCc-CCCCcc-ccCC--ccccccccccc-cccccccccccccccc
Confidence            35678999999997 57777778889999999999975 888874 4444  99999999995 5777777788999999


Q ss_pred             EecccCCCceEeccCCCcccccccccccCccEEEEecCCCCeecccCCCCcchhhhcccCCCCCCccEEEEecCCchhhh
Q 045021          130 LDISHCDNIRTLTVEDGIQSSSRRYTSYLLEKLEIWDCPSLTCIFSKNELPATLESLEVGNQPPSLKSLNVWSCSKLESI  209 (461)
Q Consensus       130 L~l~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~  209 (461)
                      +++.++. ...++  ... .      ...+....... +.+.. .........          .......... ....  
T Consensus       115 L~~~~~~-~~~~~--~~~-~------~~~~~~~~~~~-~~l~~-~~~~~~~~~----------~~~~~~~~~~-~~~~--  169 (384)
T d2omza2         115 LTLFNNQ-ITDID--PLK-N------LTNLNRLELSS-NTISD-ISALSGLTS----------LQQLSFGNQV-TDLK--  169 (384)
T ss_dssp             EECCSSC-CCCCG--GGT-T------CTTCSEEEEEE-EEECC-CGGGTTCTT----------CSEEEEEESC-CCCG--
T ss_pred             ccccccc-ccccc--ccc-c------ccccccccccc-ccccc-ccccccccc----------cccccccccc-chhh--
Confidence            9998865 33222  111 0      12344444433 22222 111111000          0111111111 1111  


Q ss_pred             HHhhcCCCccceeeccccccceecccccCCCCCccEEEecCCCCCccCCCCCCCCCCcceEeeccCccccccccccCCCC
Q 045021          210 AERLDNNTSLEMISILWCENLKFLPSGLHNLRQLQEIQLWGCENLVSFPEGGLPCAKLSKLGIYRCERLEALPKGLHNLK  289 (461)
Q Consensus       210 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~l~  289 (461)
                        .+.............+  ..........+++++.++++++ .+..++.. ...++|++|++++| .++.++ .+..++
T Consensus       170 --~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~l~l~~n-~i~~~~~~-~~~~~L~~L~l~~n-~l~~~~-~l~~l~  241 (384)
T d2omza2         170 --PLANLTTLERLDISSN--KVSDISVLAKLTNLESLIATNN-QISDITPL-GILTNLDELSLNGN-QLKDIG-TLASLT  241 (384)
T ss_dssp             --GGTTCTTCCEEECCSS--CCCCCGGGGGCTTCSEEECCSS-CCCCCGGG-GGCTTCCEEECCSS-CCCCCG-GGGGCT
T ss_pred             --hhcccccccccccccc--ccccccccccccccceeeccCC-ccCCCCcc-cccCCCCEEECCCC-CCCCcc-hhhccc
Confidence              1222333333333322  1222345667889999999987 44544432 33458999999996 466665 578899


Q ss_pred             CccEEEecc-cCCCcCCCCCCCCcceEEeecCchhhHHhhhhcccCCCCcCEEEEecCCCcccccCccccccCCCCCCCC
Q 045021          290 SLKKLRIGG-KLPSLEEDGLPTNLHFLKIERNMEIWKSMIERGFHKFSSLRHLTIEGCDDDMVSFPPEDRRLGTTLPLPA  368 (461)
Q Consensus       290 ~L~~L~l~~-~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~i~~~~~~~~~~~~~~~  368 (461)
                      +|+.|++++ .+..++....+++|++|+++++. +....   .+..++.++.+.+..|  .+..+...        ..++
T Consensus       242 ~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~~~-l~~~~---~~~~~~~l~~l~~~~n--~l~~~~~~--------~~~~  307 (384)
T d2omza2         242 NLTDLDLANNQISNLAPLSGLTKLTELKLGANQ-ISNIS---PLAGLTALTNLELNEN--QLEDISPI--------SNLK  307 (384)
T ss_dssp             TCSEEECCSSCCCCCGGGTTCTTCSEEECCSSC-CCCCG---GGTTCTTCSEEECCSS--CCSCCGGG--------GGCT
T ss_pred             ccchhccccCccCCCCcccccccCCEeeccCcc-cCCCC---cccccccccccccccc--cccccccc--------chhc
Confidence            999999999 77777777778899999999887 32222   3678899999999987  66665542        3667


Q ss_pred             CcceeecCCCCCCcccccchhhccCCcEEEecCCCCCcccCCCCCcccccEeeccCCchhHHhhcccCccccccccccce
Q 045021          369 SLASLTIGDFPNLERLSSSIVDLQNLKYLKLYDCPKLKYFSEKGLPSSLLRLYIDECPLIEEKCRKDGEQYWDLLTHIPR  448 (461)
Q Consensus       369 ~L~~L~l~~~~~l~~i~~~~~~~~~L~~L~l~~C~~l~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~  448 (461)
                      +++.|+++++ +++.++ .+..+++|++|++++| +++.++.-.-+++|++|++++|.. +..      ..+..+.+++.
T Consensus       308 ~l~~L~ls~n-~l~~l~-~l~~l~~L~~L~L~~n-~l~~l~~l~~l~~L~~L~l~~N~l-~~l------~~l~~l~~L~~  377 (384)
T d2omza2         308 NLTYLTLYFN-NISDIS-PVSSLTKLQRLFFANN-KVSDVSSLANLTNINWLSAGHNQI-SDL------TPLANLTRITQ  377 (384)
T ss_dssp             TCSEEECCSS-CCSCCG-GGGGCTTCCEEECCSS-CCCCCGGGGGCTTCCEEECCSSCC-CBC------GGGTTCTTCSE
T ss_pred             ccCeEECCCC-CCCCCc-ccccCCCCCEEECCCC-CCCCChhHcCCCCCCEEECCCCcC-CCC------hhhccCCCCCE
Confidence            9999999994 788874 5789999999999995 888876533368999999998852 221      23566789999


Q ss_pred             EEEcccE
Q 045021          449 VRIHLPV  455 (461)
Q Consensus       449 ~~~~~~~  455 (461)
                      +++++|.
T Consensus       378 L~L~~Na  384 (384)
T d2omza2         378 LGLNDQA  384 (384)
T ss_dssp             EECCCEE
T ss_pred             eeCCCCc
Confidence            9998763

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.74  E-value=2e-16  Score=145.33  Aligned_cols=222  Identities=15%  Similarity=0.171  Sum_probs=120.3

Q ss_pred             cCCccEEEecCCcCCccccc-cCCCCCCcCEEEecCCcCcccccC--CCCCCCccEEEEeecCCccccCcccccCCCCcc
Q 045021           28 SCRLEYLILRYCKGLVKLPQ-SSLSLSSLREIEICRCHSLVSFPE--VALPSKLKKIEIRECDALKSLPEAWMCGTNSSL  104 (461)
Q Consensus        28 ~~~L~~L~l~~~~~l~~l~~-~~~~l~~L~~L~l~~~~~l~~~~~--~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L  104 (461)
                      ++++++|+|+++ .++.+|. +|.++++|++|++++|. +..+++  +..+++|++|+++++. ++.+|..+.    ..+
T Consensus        30 ~~~l~~L~Ls~N-~i~~l~~~~f~~l~~L~~L~l~~n~-~~~i~~~~f~~l~~L~~L~l~~n~-l~~l~~~~~----~~l  102 (305)
T d1xkua_          30 PPDTALLDLQNN-KITEIKDGDFKNLKNLHTLILINNK-ISKISPGAFAPLVKLERLYLSKNQ-LKELPEKMP----KTL  102 (305)
T ss_dssp             CTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCSSC-CCCBCTTTTTTCTTCCEEECCSSC-CSBCCSSCC----TTC
T ss_pred             CCCCCEEECcCC-cCCCcChhHhhcccccccccccccc-ccccchhhhhCCCccCEecccCCc-cCcCccchh----hhh
Confidence            378888998884 5677765 68888889999988874 444544  7778888888888865 777776533    567


Q ss_pred             cEEEeeCCCCCcccccc--CCCCCccEEecccCCCceEeccCCCcccccccccccCccEEEEecCCCCeecccCCCCcch
Q 045021          105 EILKIWSCHSLPYIARV--QLPPSLKRLDISHCDNIRTLTVEDGIQSSSRRYTSYLLEKLEIWDCPSLTCIFSKNELPAT  182 (461)
Q Consensus       105 ~~L~l~~~~~l~~~~~~--~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~  182 (461)
                      +.|++.++ .+..++..  .....+..+....+...........+..      .++|+.+++.+ +.+.. ++..     
T Consensus       103 ~~L~~~~n-~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~------l~~L~~l~l~~-n~l~~-l~~~-----  168 (305)
T d1xkua_         103 QELRVHEN-EITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQG------MKKLSYIRIAD-TNITT-IPQG-----  168 (305)
T ss_dssp             CEEECCSS-CCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGG------CTTCCEEECCS-SCCCS-CCSS-----
T ss_pred             hhhhcccc-chhhhhhhhhhccccccccccccccccccCCCcccccc------ccccCcccccc-CCccc-cCcc-----
Confidence            77777663 34443322  3334444555444321110000011111      23455555554 23332 2211     


Q ss_pred             hhhcccCCCCCCccEEEEecCCchhhhHHhhcCCCccceeeccccccceecccccCCCCCccEEEecCCCCCccCCC-CC
Q 045021          183 LESLEVGNQPPSLKSLNVWSCSKLESIAERLDNNTSLEMISILWCENLKFLPSGLHNLRQLQEIQLWGCENLVSFPE-GG  261 (461)
Q Consensus       183 ~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~-~~  261 (461)
                                                      .+++|++|++.++......+..+..++.++.|++++| .+..++. ..
T Consensus       169 --------------------------------~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n-~l~~~~~~~~  215 (305)
T d1xkua_         169 --------------------------------LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFN-SISAVDNGSL  215 (305)
T ss_dssp             --------------------------------CCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSS-CCCEECTTTG
T ss_pred             --------------------------------cCCccCEEECCCCcCCCCChhHhhccccccccccccc-cccccccccc
Confidence                                            1344555555544333333444555555555555554 3333322 22


Q ss_pred             CCCCCcceEeeccCccccccccccCCCCCccEEEecc-cCCCcC
Q 045021          262 LPCAKLSKLGIYRCERLEALPKGLHNLKSLKKLRIGG-KLPSLE  304 (461)
Q Consensus       262 ~~~~~L~~L~l~~c~~~~~~~~~~~~l~~L~~L~l~~-~~~~l~  304 (461)
                      ..+++|++|++++| .++.+|.++..+++|++|++++ .++.++
T Consensus       216 ~~l~~L~~L~L~~N-~L~~lp~~l~~l~~L~~L~Ls~N~i~~i~  258 (305)
T d1xkua_         216 ANTPHLRELHLNNN-KLVKVPGGLADHKYIQVVYLHNNNISAIG  258 (305)
T ss_dssp             GGSTTCCEEECCSS-CCSSCCTTTTTCSSCCEEECCSSCCCCCC
T ss_pred             cccccceeeecccc-cccccccccccccCCCEEECCCCccCccC
Confidence            33445666666654 4555555566666666666666 555443

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.72  E-value=6e-16  Score=142.07  Aligned_cols=264  Identities=14%  Similarity=0.186  Sum_probs=144.0

Q ss_pred             cCEEEecCCcCcccccCCCCCCCccEEEEeecCCccccCcccccCCCCcccEEEeeCCCCCccccc--cCCCCCccEEec
Q 045021           55 LREIEICRCHSLVSFPEVALPSKLKKIEIRECDALKSLPEAWMCGTNSSLEILKIWSCHSLPYIAR--VQLPPSLKRLDI  132 (461)
Q Consensus        55 L~~L~l~~~~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~--~~~~~~L~~L~l  132 (461)
                      ++.++-++ ..++.+|. ..++++++|+++++. ++.++...+.. +++|++|+++++. +..++.  ...+++|++|++
T Consensus        12 ~~~~~C~~-~~L~~lP~-~l~~~l~~L~Ls~N~-i~~l~~~~f~~-l~~L~~L~l~~n~-~~~i~~~~f~~l~~L~~L~l   86 (305)
T d1xkua_          12 LRVVQCSD-LGLEKVPK-DLPPDTALLDLQNNK-ITEIKDGDFKN-LKNLHTLILINNK-ISKISPGAFAPLVKLERLYL   86 (305)
T ss_dssp             TTEEECTT-SCCCSCCC-SCCTTCCEEECCSSC-CCCBCTTTTTT-CTTCCEEECCSSC-CCCBCTTTTTTCTTCCEEEC
T ss_pred             CCEEEecC-CCCCccCC-CCCCCCCEEECcCCc-CCCcChhHhhc-ccccccccccccc-ccccchhhhhCCCccCEecc
Confidence            34444443 23555654 224567777777654 66666533221 2666666666643 223222  244555555555


Q ss_pred             ccCCCceEeccCCCcccccccccccCccEEEEecCCCCeecccCCCCcchhhhcccCCCCCCccEEEEecCCchhhhHHh
Q 045021          133 SHCDNIRTLTVEDGIQSSSRRYTSYLLEKLEIWDCPSLTCIFSKNELPATLESLEVGNQPPSLKSLNVWSCSKLESIAER  212 (461)
Q Consensus       133 ~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~  212 (461)
                      +++. ++.+|  ..+.        +.                                    +..|...++.........
T Consensus        87 ~~n~-l~~l~--~~~~--------~~------------------------------------l~~L~~~~n~l~~l~~~~  119 (305)
T d1xkua_          87 SKNQ-LKELP--EKMP--------KT------------------------------------LQELRVHENEITKVRKSV  119 (305)
T ss_dssp             CSSC-CSBCC--SSCC--------TT------------------------------------CCEEECCSSCCCBBCHHH
T ss_pred             cCCc-cCcCc--cchh--------hh------------------------------------hhhhhccccchhhhhhhh
Confidence            5542 33344  2221        13                                    444444432111111223


Q ss_pred             hcCCCccceeeccccccc--eecccccCCCCCccEEEecCCCCCccCCCCCCCCCCcceEeeccCccccccccccCCCCC
Q 045021          213 LDNNTSLEMISILWCENL--KFLPSGLHNLRQLQEIQLWGCENLVSFPEGGLPCAKLSKLGIYRCERLEALPKGLHNLKS  290 (461)
Q Consensus       213 ~~~l~~L~~L~l~~~~~~--~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~l~~  290 (461)
                      +.....++.+....+...  ...+..+..+++|+.+++++| .+..++...  +++|++|++.++......+..+..++.
T Consensus       120 ~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n-~l~~l~~~~--~~~L~~L~l~~n~~~~~~~~~~~~~~~  196 (305)
T d1xkua_         120 FNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADT-NITTIPQGL--PPSLTELHLDGNKITKVDAASLKGLNN  196 (305)
T ss_dssp             HTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSS-CCCSCCSSC--CTTCSEEECTTSCCCEECTGGGTTCTT
T ss_pred             hhccccccccccccccccccCCCccccccccccCccccccC-CccccCccc--CCccCEEECCCCcCCCCChhHhhcccc
Confidence            444555555555543221  223445667788888888876 445555433  458899998887766666667888888


Q ss_pred             ccEEEecc-cCCCcCCC--CCCCCcceEEeecCchhhHHhhhhcccCCCCcCEEEEecCCCcccccCccccccCCCCCCC
Q 045021          291 LKKLRIGG-KLPSLEED--GLPTNLHFLKIERNMEIWKSMIERGFHKFSSLRHLTIEGCDDDMVSFPPEDRRLGTTLPLP  367 (461)
Q Consensus       291 L~~L~l~~-~~~~l~~~--~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~i~~~~~~~~~~~~~~  367 (461)
                      +++|++++ .+..++..  ..+++|++|++++|. ++.. + ..+..+++|++|++++|  .+..++...+.-......+
T Consensus       197 l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~-L~~l-p-~~l~~l~~L~~L~Ls~N--~i~~i~~~~f~~~~~~~~~  271 (305)
T d1xkua_         197 LAKLGLSFNSISAVDNGSLANTPHLRELHLNNNK-LVKV-P-GGLADHKYIQVVYLHNN--NISAIGSNDFCPPGYNTKK  271 (305)
T ss_dssp             CCEEECCSSCCCEECTTTGGGSTTCCEEECCSSC-CSSC-C-TTTTTCSSCCEEECCSS--CCCCCCTTSSSCSSCCTTS
T ss_pred             ccccccccccccccccccccccccceeeeccccc-cccc-c-cccccccCCCEEECCCC--ccCccChhhccCcchhccc
Confidence            88888887 66665543  334677777777775 3321 2 24666777777777776  6666655422111111234


Q ss_pred             CCcceeecCCC
Q 045021          368 ASLASLTIGDF  378 (461)
Q Consensus       368 ~~L~~L~l~~~  378 (461)
                      ++|+.|+++++
T Consensus       272 ~~L~~L~L~~N  282 (305)
T d1xkua_         272 ASYSGVSLFSN  282 (305)
T ss_dssp             CCCSEEECCSS
T ss_pred             CCCCEEECCCC
Confidence            56666667663

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.70  E-value=2.5e-17  Score=152.08  Aligned_cols=246  Identities=17%  Similarity=0.108  Sum_probs=142.3

Q ss_pred             CccEEEecCCc--CCccccccCCCCCCcCEEEecCCcCcc-cccC-CCCCCCccEEEEeecCCccccC-cccccCCCCcc
Q 045021           30 RLEYLILRYCK--GLVKLPQSSLSLSSLREIEICRCHSLV-SFPE-VALPSKLKKIEIRECDALKSLP-EAWMCGTNSSL  104 (461)
Q Consensus        30 ~L~~L~l~~~~--~l~~l~~~~~~l~~L~~L~l~~~~~l~-~~~~-~~~l~~L~~L~l~~~~~l~~~~-~~~~~~~~~~L  104 (461)
                      ++++|+|+++.  +...+|..++++++|++|+|++|+.+. .+|. ++.+++|++|+++++. +..++ ..+...  .+|
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~-l~~~~~~~~~~~--~~L  127 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTN-VSGAIPDFLSQI--KTL  127 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEEC-CEEECCGGGGGC--TTC
T ss_pred             EEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhcccc-ccccccccccch--hhh
Confidence            57778887742  112467778888888888887654554 5666 7778888888888865 44433 333333  667


Q ss_pred             cEEEeeCCCCCcccccc-CCCCCccEEecccCCCceEeccCCCcccccccccccCc-cEEEEecCCCCeecccCCCCcch
Q 045021          105 EILKIWSCHSLPYIARV-QLPPSLKRLDISHCDNIRTLTVEDGIQSSSRRYTSYLL-EKLEIWDCPSLTCIFSKNELPAT  182 (461)
Q Consensus       105 ~~L~l~~~~~l~~~~~~-~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~~~~L-~~L~l~~~~~l~~~~~~~~~~~~  182 (461)
                      +.++++++.....++.. ..++.++.++++++.....+|  ..+..      +..+ +.+++++ ++++.          
T Consensus       128 ~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip--~~~~~------l~~l~~~l~~~~-n~l~~----------  188 (313)
T d1ogqa_         128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIP--DSYGS------FSKLFTSMTISR-NRLTG----------  188 (313)
T ss_dssp             CEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECC--GGGGC------CCTTCCEEECCS-SEEEE----------
T ss_pred             cccccccccccccCchhhccCcccceeeccccccccccc--ccccc------cccccccccccc-ccccc----------
Confidence            77777664433333322 455566666666554333444  33322      2222 3333333 33222          


Q ss_pred             hhhcccCCCCCCccEEEEecCCchhhhHHhhcCCCccceeeccccccceecccccCCCCCccEEEecCCCCCccCCCCCC
Q 045021          183 LESLEVGNQPPSLKSLNVWSCSKLESIAERLDNNTSLEMISILWCENLKFLPSGLHNLRQLQEIQLWGCENLVSFPEGGL  262 (461)
Q Consensus       183 ~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~  262 (461)
                                               ..+..+..+. ...+++..+.....++..+..+++++.++++++.....+ ....
T Consensus       189 -------------------------~~~~~~~~l~-~~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~-~~~~  241 (313)
T d1ogqa_         189 -------------------------KIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDL-GKVG  241 (313)
T ss_dssp             -------------------------ECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBG-GGCC
T ss_pred             -------------------------cccccccccc-ccccccccccccccccccccccccccccccccccccccc-cccc
Confidence                                     1222233332 234555555444555666666777777777766332222 2334


Q ss_pred             CCCCcceEeeccCccccccccccCCCCCccEEEecc-cCC-CcCCCCCCCCcceEEeecCchhh
Q 045021          263 PCAKLSKLGIYRCERLEALPKGLHNLKSLKKLRIGG-KLP-SLEEDGLPTNLHFLKIERNMEIW  324 (461)
Q Consensus       263 ~~~~L~~L~l~~c~~~~~~~~~~~~l~~L~~L~l~~-~~~-~l~~~~~~~~L~~L~l~~~~~l~  324 (461)
                      .+++|+.|++++|.-...+|..++++++|++|++++ .+. .+|..+.+++|+.+++++|+.+.
T Consensus       242 ~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~~~L~~L~~l~l~~N~~l~  305 (313)
T d1ogqa_         242 LSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLC  305 (313)
T ss_dssp             CCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEE
T ss_pred             cccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCCcccCCCCCHHHhCCCcccc
Confidence            455777777777654446777778888888888887 554 56666666788888888887443

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.68  E-value=1.2e-14  Score=135.72  Aligned_cols=314  Identities=27%  Similarity=0.302  Sum_probs=187.5

Q ss_pred             CCccEEEecCCcCCccccccCCCCCCcCEEEecCCcCcccccCCCCCCCccEEEEeecCCccccCcccccCCCCcccEEE
Q 045021           29 CRLEYLILRYCKGLVKLPQSSLSLSSLREIEICRCHSLVSFPEVALPSKLKKIEIRECDALKSLPEAWMCGTNSSLEILK  108 (461)
Q Consensus        29 ~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~  108 (461)
                      .++++|++++ .+++.+|..   .++|++|+++++ .++++|.  .+.+|+.|++.++. ++.++.-     .+.|++|+
T Consensus        38 ~~l~~LdLs~-~~L~~lp~~---~~~L~~L~Ls~N-~l~~lp~--~~~~L~~L~l~~n~-l~~l~~l-----p~~L~~L~  104 (353)
T d1jl5a_          38 RQAHELELNN-LGLSSLPEL---PPHLESLVASCN-SLTELPE--LPQSLKSLLVDNNN-LKALSDL-----PPLLEYLG  104 (353)
T ss_dssp             HTCSEEECTT-SCCSCCCSC---CTTCSEEECCSS-CCSSCCC--CCTTCCEEECCSSC-CSCCCSC-----CTTCCEEE
T ss_pred             cCCCEEEeCC-CCCCCCCCC---CCCCCEEECCCC-CCccccc--chhhhhhhhhhhcc-cchhhhh-----cccccccc
Confidence            5799999998 457888864   468999999986 7788874  35789999999865 6666542     15699999


Q ss_pred             eeCCCCCccccccCCCCCccEEecccCCCceEeccCCCcccccccccccCccEEEEecCCCCeecccCCCCcchhhhccc
Q 045021          109 IWSCHSLPYIARVQLPPSLKRLDISHCDNIRTLTVEDGIQSSSRRYTSYLLEKLEIWDCPSLTCIFSKNELPATLESLEV  188 (461)
Q Consensus       109 l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~  188 (461)
                      ++++ .++.++..+.+++|+++++.++. +...+  ..         .+.+..+.+..+.....    ..+.        
T Consensus       105 L~~n-~l~~lp~~~~l~~L~~L~l~~~~-~~~~~--~~---------~~~l~~l~~~~~~~~~~----~~l~--------  159 (353)
T d1jl5a_         105 VSNN-QLEKLPELQNSSFLKIIDVDNNS-LKKLP--DL---------PPSLEFIAAGNNQLEEL----PELQ--------  159 (353)
T ss_dssp             CCSS-CCSSCCCCTTCTTCCEEECCSSC-CSCCC--CC---------CTTCCEEECCSSCCSSC----CCCT--------
T ss_pred             cccc-ccccccchhhhccceeecccccc-ccccc--cc---------cccccchhhcccccccc----cccc--------
Confidence            9985 67788877888999999998865 23333  22         12466666655222111    1111        


Q ss_pred             CCCCCCccEEEEecCCchhhhHHhhcCCCccceeeccccccceecccccCCCCCccEEEecCCCCCccCCCCCCCCCCcc
Q 045021          189 GNQPPSLKSLNVWSCSKLESIAERLDNNTSLEMISILWCENLKFLPSGLHNLRQLQEIQLWGCENLVSFPEGGLPCAKLS  268 (461)
Q Consensus       189 ~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~  268 (461)
                        .++.++.+.+.++... ..+   ......+.+...+ ..+..++ ....++.|+.++++++. ...++.   ...++.
T Consensus       160 --~l~~l~~L~l~~n~~~-~~~---~~~~~~~~l~~~~-~~~~~~~-~~~~l~~L~~l~l~~n~-~~~~~~---~~~~l~  227 (353)
T d1jl5a_         160 --NLPFLTAIYADNNSLK-KLP---DLPLSLESIVAGN-NILEELP-ELQNLPFLTTIYADNNL-LKTLPD---LPPSLE  227 (353)
T ss_dssp             --TCTTCCEEECCSSCCS-SCC---CCCTTCCEEECCS-SCCSSCC-CCTTCTTCCEEECCSSC-CSSCCS---CCTTCC
T ss_pred             --ccccceeccccccccc-ccc---ccccccccccccc-ccccccc-ccccccccccccccccc-cccccc---cccccc
Confidence              1145777777664322 211   1112233333332 2233333 35567788888887763 233332   123566


Q ss_pred             eEeeccCccccccccccCCCCCccEEEecc-cCCCcCCCCCCCCcceEEeecCchhhHHhhhhcccCCCCcCEEEEecCC
Q 045021          269 KLGIYRCERLEALPKGLHNLKSLKKLRIGG-KLPSLEEDGLPTNLHFLKIERNMEIWKSMIERGFHKFSSLRHLTIEGCD  347 (461)
Q Consensus       269 ~L~l~~c~~~~~~~~~~~~l~~L~~L~l~~-~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~  347 (461)
                      .+.+.++. +...+.   ..+.+...++.. ....+..  .+......++..+. +.     .....+++|++|++++| 
T Consensus       228 ~~~~~~~~-~~~~~~---~~~~l~~~~~~~~~~~~l~~--l~~~~~~~~~~~~~-~~-----~~~~~~~~L~~L~Ls~N-  294 (353)
T d1jl5a_         228 ALNVRDNY-LTDLPE---LPQSLTFLDVSENIFSGLSE--LPPNLYYLNASSNE-IR-----SLCDLPPSLEELNVSNN-  294 (353)
T ss_dssp             EEECCSSC-CSCCCC---CCTTCCEEECCSSCCSEESC--CCTTCCEEECCSSC-CS-----EECCCCTTCCEEECCSS-
T ss_pred             cccccccc-cccccc---cccccccccccccccccccc--ccchhcccccccCc-cc-----cccccCCCCCEEECCCC-
Confidence            66666543 222221   233444444443 2222211  12233444444433 11     12234678899999887 


Q ss_pred             CcccccCccccccCCCCCCCCCcceeecCCCCCCcccccchhhccCCcEEEecCCCCCcccCCCCCcccccEeecc
Q 045021          348 DDMVSFPPEDRRLGTTLPLPASLASLTIGDFPNLERLSSSIVDLQNLKYLKLYDCPKLKYFSEKGLPSSLLRLYID  423 (461)
Q Consensus       348 ~~~~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~L~~L~l~~C~~l~~~~~~~~~~~L~~L~i~  423 (461)
                       .+..+|.          .+++|+.|+++++ .++++|.   .+++|++|++++| .++++|.  ++.+|+.|.++
T Consensus       295 -~l~~lp~----------~~~~L~~L~L~~N-~L~~l~~---~~~~L~~L~L~~N-~L~~lp~--~~~~L~~L~~~  352 (353)
T d1jl5a_         295 -KLIELPA----------LPPRLERLIASFN-HLAEVPE---LPQNLKQLHVEYN-PLREFPD--IPESVEDLRMN  352 (353)
T ss_dssp             -CCSCCCC----------CCTTCCEEECCSS-CCSCCCC---CCTTCCEEECCSS-CCSSCCC--CCTTCCEEECC
T ss_pred             -ccCcccc----------ccCCCCEEECCCC-cCCcccc---ccCCCCEEECcCC-cCCCCCc--cccccCeeECc
Confidence             6777775          3358889999874 6777763   3467889999884 5888875  56778888775

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.67  E-value=1.3e-16  Score=147.19  Aligned_cols=241  Identities=15%  Similarity=0.049  Sum_probs=150.2

Q ss_pred             CcCEEEecCCcCcc--cccC-CCCCCCccEEEEeecCCcc-ccCcccccCCCCcccEEEeeCCCCCccccc--cCCCCCc
Q 045021           54 SLREIEICRCHSLV--SFPE-VALPSKLKKIEIRECDALK-SLPEAWMCGTNSSLEILKIWSCHSLPYIAR--VQLPPSL  127 (461)
Q Consensus        54 ~L~~L~l~~~~~l~--~~~~-~~~l~~L~~L~l~~~~~l~-~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~--~~~~~~L  127 (461)
                      ++++|+|+++.--.  .+|. ++.+++|++|+++++..+. .+|..+...  ++|++|+++++. +.....  ...+..|
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L--~~L~~L~Ls~N~-l~~~~~~~~~~~~~L  127 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKL--TQLHYLYITHTN-VSGAIPDFLSQIKTL  127 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGC--TTCSEEEEEEEC-CEEECCGGGGGCTTC
T ss_pred             EEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccc--cccchhhhcccc-ccccccccccchhhh
Confidence            56777777653211  3444 6667777777776644343 566666655  666666666632 222211  1333444


Q ss_pred             cEEecccCCCceEeccCCCcccccccccccCccEEEEecCCCCeecccCCCCcchhhhcccCCCCCCccEEEEecCCchh
Q 045021          128 KRLDISHCDNIRTLTVEDGIQSSSRRYTSYLLEKLEIWDCPSLTCIFSKNELPATLESLEVGNQPPSLKSLNVWSCSKLE  207 (461)
Q Consensus       128 ~~L~l~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~  207 (461)
                      +.+++.++.....+|  ..+..      +                                    ++++.+++.++....
T Consensus       128 ~~l~l~~N~~~~~~p--~~l~~------l------------------------------------~~L~~l~l~~n~l~~  163 (313)
T d1ogqa_         128 VTLDFSYNALSGTLP--PSISS------L------------------------------------PNLVGITFDGNRISG  163 (313)
T ss_dssp             CEEECCSSEEESCCC--GGGGG------C------------------------------------TTCCEEECCSSCCEE
T ss_pred             cccccccccccccCc--hhhcc------C------------------------------------cccceeecccccccc
Confidence            444444433222222  22222      2                                    345666666544444


Q ss_pred             hhHHhhcCCCcc-ceeeccccccceecccccCCCCCccEEEecCCCCCccCCCCCCCCCCcceEeeccCccccccccccC
Q 045021          208 SIAERLDNNTSL-EMISILWCENLKFLPSGLHNLRQLQEIQLWGCENLVSFPEGGLPCAKLSKLGIYRCERLEALPKGLH  286 (461)
Q Consensus       208 ~~~~~~~~l~~L-~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~~~~~~~~~~  286 (461)
                      .+|..+..+.++ +.+.+.++......+..+..+.. ..+++..+.....++......++++.+++.++.... .+..+.
T Consensus       164 ~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~-~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~-~~~~~~  241 (313)
T d1ogqa_         164 AIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNL-AFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAF-DLGKVG  241 (313)
T ss_dssp             ECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCC-SEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECC-BGGGCC
T ss_pred             cccccccccccccccccccccccccccccccccccc-cccccccccccccccccccccccccccccccccccc-cccccc
Confidence            455556566555 67777776544555666666544 468888876555666666677899999999875443 444688


Q ss_pred             CCCCccEEEecc-cCC-CcCCC-CCCCCcceEEeecCchhhHHhhhhcccCCCCcCEEEEecC
Q 045021          287 NLKSLKKLRIGG-KLP-SLEED-GLPTNLHFLKIERNMEIWKSMIERGFHKFSSLRHLTIEGC  346 (461)
Q Consensus       287 ~l~~L~~L~l~~-~~~-~l~~~-~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~  346 (461)
                      .+++|++|++++ .+. .+|.. ..+++|++|++++|. +++..+  .+..+++|+.+++.+|
T Consensus       242 ~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~-l~g~iP--~~~~L~~L~~l~l~~N  301 (313)
T d1ogqa_         242 LSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNN-LCGEIP--QGGNLQRFDVSAYANN  301 (313)
T ss_dssp             CCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSE-EEEECC--CSTTGGGSCGGGTCSS
T ss_pred             cccccccccCccCeecccCChHHhCCCCCCEEECcCCc-ccccCC--CcccCCCCCHHHhCCC
Confidence            999999999999 665 66654 667899999999997 443344  3567888999999987

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=2.5e-14  Score=129.59  Aligned_cols=208  Identities=16%  Similarity=0.172  Sum_probs=103.6

Q ss_pred             CCccccccCCCCCCcCEEEecCCcCcccccC--CCCCCCccEEEEeecCCccccCcccccCCCCcccEEEeeCCCCCccc
Q 045021           41 GLVKLPQSSLSLSSLREIEICRCHSLVSFPE--VALPSKLKKIEIRECDALKSLPEAWMCGTNSSLEILKIWSCHSLPYI  118 (461)
Q Consensus        41 ~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~--~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~  118 (461)
                      +++.+|..+.  +++++|+|++| .++.+|.  +..+++|++|+++++. +..++...... ...++.+.+...+.++.+
T Consensus        22 ~L~~iP~~ip--~~~~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~ls~n~-l~~i~~~~~~~-~~~~~~l~~~~~~~~~~l   96 (284)
T d1ozna_          22 GLQAVPVGIP--AASQRIFLHGN-RISHVPAASFRACRNLTILWLHSNV-LARIDAAAFTG-LALLEQLDLSDNAQLRSV   96 (284)
T ss_dssp             CCSSCCTTCC--TTCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTT-CTTCCEEECCSCTTCCCC
T ss_pred             CCCccCCCCC--CCCCEEECcCC-cCCCCCHHHhhcccccccccccccc-ccccccccccc-cccccccccccccccccc
Confidence            3555665443  45677777765 4556655  5666677777776644 55444433322 255566655554555444


Q ss_pred             ccc--CCCCCccEEecccCCCceEeccCCCcccccccccccCccEEEEecCCCCeecccCCCCcchhhhcccCCCCCCcc
Q 045021          119 ARV--QLPPSLKRLDISHCDNIRTLTVEDGIQSSSRRYTSYLLEKLEIWDCPSLTCIFSKNELPATLESLEVGNQPPSLK  196 (461)
Q Consensus       119 ~~~--~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~  196 (461)
                      +..  ..+++|++|++.++.. ..++. ..+..      .++|+.+++.+ ++++. ++.                    
T Consensus        97 ~~~~~~~l~~L~~L~l~~n~~-~~~~~-~~~~~------~~~L~~l~l~~-N~l~~-i~~--------------------  146 (284)
T d1ozna_          97 DPATFHGLGRLHTLHLDRCGL-QELGP-GLFRG------LAALQYLYLQD-NALQA-LPD--------------------  146 (284)
T ss_dssp             CTTTTTTCTTCCEEECTTSCC-CCCCT-TTTTT------CTTCCEEECCS-SCCCC-CCT--------------------
T ss_pred             cchhhcccccCCEEecCCccc-ccccc-cccch------hcccchhhhcc-ccccc-cCh--------------------
Confidence            332  3445555555555431 11110 11111      22344444444 33333 222                    


Q ss_pred             EEEEecCCchhhhHHhhcCCCccceeeccccccceec-ccccCCCCCccEEEecCCCCCccCCCCCCCCCCcceEeeccC
Q 045021          197 SLNVWSCSKLESIAERLDNNTSLEMISILWCENLKFL-PSGLHNLRQLQEIQLWGCENLVSFPEGGLPCAKLSKLGIYRC  275 (461)
Q Consensus       197 ~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c  275 (461)
                                    ..+..+++|+.|+++++ .+..+ +.++.++++|+.+++++|......+.....+++|++|+++++
T Consensus       147 --------------~~f~~~~~L~~L~l~~N-~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N  211 (284)
T d1ozna_         147 --------------DTFRDLGNLTHLFLHGN-RISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFAN  211 (284)
T ss_dssp             --------------TTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             --------------hHhccccchhhcccccC-cccccchhhhccccccchhhhhhccccccChhHhhhhhhccccccccc
Confidence                          23444555555555554 23322 344555666666666655332222334444556666666664


Q ss_pred             ccccccccccCCCCCccEEEecc
Q 045021          276 ERLEALPKGLHNLKSLKKLRIGG  298 (461)
Q Consensus       276 ~~~~~~~~~~~~l~~L~~L~l~~  298 (461)
                      ......+..++.+++|++|++++
T Consensus       212 ~i~~~~~~~~~~~~~L~~L~l~~  234 (284)
T d1ozna_         212 NLSALPTEALAPLRALQYLRLND  234 (284)
T ss_dssp             CCSCCCHHHHTTCTTCCEEECCS
T ss_pred             ccccccccccccccccCEEEecC
Confidence            43333344666777777777765

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=2.6e-14  Score=128.09  Aligned_cols=96  Identities=18%  Similarity=0.192  Sum_probs=45.7

Q ss_pred             ccEEEecCCcCCccccccCCCCCCcCEEEecCCcCcccccC--CCCCCCccEEEEeecCCccccCcccccCCCCcccEEE
Q 045021           31 LEYLILRYCKGLVKLPQSSLSLSSLREIEICRCHSLVSFPE--VALPSKLKKIEIRECDALKSLPEAWMCGTNSSLEILK  108 (461)
Q Consensus        31 L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~--~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~  108 (461)
                      +.+.+.++ .+++.+|..++  +++++|+|+++ .+..+|.  +..+++|++|+++++. ++.++.. ..  +++|+.|+
T Consensus        12 ~~~v~C~~-~~L~~iP~~lp--~~l~~L~Ls~N-~i~~l~~~~f~~l~~L~~L~L~~N~-l~~l~~~-~~--l~~L~~L~   83 (266)
T d1p9ag_          12 HLEVNCDK-RNLTALPPDLP--KDTTILHLSEN-LLYTFSLATLMPYTRLTQLNLDRAE-LTKLQVD-GT--LPVLGTLD   83 (266)
T ss_dssp             CCEEECTT-SCCSSCCSCCC--TTCCEEECTTS-CCSEEEGGGGTTCTTCCEEECTTSC-CCEEECC-SC--CTTCCEEE
T ss_pred             CeEEEccC-CCCCeeCcCcC--cCCCEEECcCC-cCCCcCHHHhhcccccccccccccc-ccccccc-cc--cccccccc
Confidence            33344443 33455555443  35666666664 3444443  4555666666666543 4544432 11  25555555


Q ss_pred             eeCCCCCcccccc-CCCCCccEEecccC
Q 045021          109 IWSCHSLPYIARV-QLPPSLKRLDISHC  135 (461)
Q Consensus       109 l~~~~~l~~~~~~-~~~~~L~~L~l~~~  135 (461)
                      ++++ .++.++.. ..+++|+.|+++++
T Consensus        84 Ls~N-~l~~~~~~~~~l~~L~~L~l~~~  110 (266)
T d1p9ag_          84 LSHN-QLQSLPLLGQTLPALTVLDVSFN  110 (266)
T ss_dssp             CCSS-CCSSCCCCTTTCTTCCEEECCSS
T ss_pred             cccc-ccccccccccccccccccccccc
Confidence            5553 33332222 33445555555543

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=6.3e-14  Score=125.50  Aligned_cols=194  Identities=23%  Similarity=0.200  Sum_probs=107.5

Q ss_pred             CCCcCEEEecCCcCcccccCCCCCCCccEEEEeecCCccccCcccccCCCCcccEEEeeCCCCCccccccCCCCCccEEe
Q 045021           52 LSSLREIEICRCHSLVSFPEVALPSKLKKIEIRECDALKSLPEAWMCGTNSSLEILKIWSCHSLPYIARVQLPPSLKRLD  131 (461)
Q Consensus        52 l~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~  131 (461)
                      ...+..++.++. .++.+|. ...+++++|+++++. ++.++...+.. +++|++|+++++ .++.++....+++|++|+
T Consensus         9 ~~~~~~v~C~~~-~L~~iP~-~lp~~l~~L~Ls~N~-i~~l~~~~f~~-l~~L~~L~L~~N-~l~~l~~~~~l~~L~~L~   83 (266)
T d1p9ag_           9 VASHLEVNCDKR-NLTALPP-DLPKDTTILHLSENL-LYTFSLATLMP-YTRLTQLNLDRA-ELTKLQVDGTLPVLGTLD   83 (266)
T ss_dssp             STTCCEEECTTS-CCSSCCS-CCCTTCCEEECTTSC-CSEEEGGGGTT-CTTCCEEECTTS-CCCEEECCSCCTTCCEEE
T ss_pred             cCCCeEEEccCC-CCCeeCc-CcCcCCCEEECcCCc-CCCcCHHHhhc-cccccccccccc-cccccccccccccccccc
Confidence            344555666653 4666664 123578888888854 77766543322 377888888774 566666556666777777


Q ss_pred             cccCCCceEeccCCCcccccccccccCccEEEEecCCCCeecccCCCCcchhhhcccCCCCCCccEEEEecCCchhhhHH
Q 045021          132 ISHCDNIRTLTVEDGIQSSSRRYTSYLLEKLEIWDCPSLTCIFSKNELPATLESLEVGNQPPSLKSLNVWSCSKLESIAE  211 (461)
Q Consensus       132 l~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~  211 (461)
                      ++++. +...+  ..+..      +++|+.|++++ +.+..                                   ..+.
T Consensus        84 Ls~N~-l~~~~--~~~~~------l~~L~~L~l~~-~~~~~-----------------------------------~~~~  118 (266)
T d1p9ag_          84 LSHNQ-LQSLP--LLGQT------LPALTVLDVSF-NRLTS-----------------------------------LPLG  118 (266)
T ss_dssp             CCSSC-CSSCC--CCTTT------CTTCCEEECCS-SCCCC-----------------------------------CCSS
T ss_pred             ccccc-ccccc--ccccc------ccccccccccc-cccce-----------------------------------eecc
Confidence            76653 33333  33322      34555555555 33322                                   1222


Q ss_pred             hhcCCCccceeeccccccceec-ccccCCCCCccEEEecCCCCCccCCC-CCCCCCCcceEeeccCccccccccccCCCC
Q 045021          212 RLDNNTSLEMISILWCENLKFL-PSGLHNLRQLQEIQLWGCENLVSFPE-GGLPCAKLSKLGIYRCERLEALPKGLHNLK  289 (461)
Q Consensus       212 ~~~~l~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~c~~~~~~~~~~~~l~  289 (461)
                      .+..+.++++|.+.++ .+..+ +..+..+++++.+++++| .+..++. ....+++|++|++++| .++.+|..+..++
T Consensus       119 ~~~~l~~l~~L~l~~n-~l~~l~~~~~~~l~~l~~l~l~~N-~l~~~~~~~~~~l~~L~~L~Ls~N-~L~~lp~~~~~~~  195 (266)
T d1p9ag_         119 ALRGLGELQELYLKGN-ELKTLPPGLLTPTPKLEKLSLANN-NLTELPAGLLNGLENLDTLLLQEN-SLYTIPKGFFGSH  195 (266)
T ss_dssp             TTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTS-CCSCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTC
T ss_pred             cccccccccccccccc-ccceeccccccccccchhcccccc-cccccCccccccccccceeecccC-CCcccChhHCCCC
Confidence            3344555556666554 23233 234455566666666665 3444443 2344556666666664 3556666666666


Q ss_pred             CccEEEecc
Q 045021          290 SLKKLRIGG  298 (461)
Q Consensus       290 ~L~~L~l~~  298 (461)
                      +|+.|++++
T Consensus       196 ~L~~L~L~~  204 (266)
T d1p9ag_         196 LLPFAFLHG  204 (266)
T ss_dssp             CCSEEECCS
T ss_pred             CCCEEEecC
Confidence            777776665

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.54  E-value=2.6e-12  Score=119.60  Aligned_cols=296  Identities=27%  Similarity=0.306  Sum_probs=177.5

Q ss_pred             CCcCEEEecCCcCcccccCCCCCCCccEEEEeecCCccccCcccccCCCCcccEEEeeCCCCCccccccCCCCCccEEec
Q 045021           53 SSLREIEICRCHSLVSFPEVALPSKLKKIEIRECDALKSLPEAWMCGTNSSLEILKIWSCHSLPYIARVQLPPSLKRLDI  132 (461)
Q Consensus        53 ~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l  132 (461)
                      .++++|+++++ .++.+|.  .+++|++|+++++ .++.+|..+     .+|+.|++.++ .++.++.  .++.|++|++
T Consensus        38 ~~l~~LdLs~~-~L~~lp~--~~~~L~~L~Ls~N-~l~~lp~~~-----~~L~~L~l~~n-~l~~l~~--lp~~L~~L~L  105 (353)
T d1jl5a_          38 RQAHELELNNL-GLSSLPE--LPPHLESLVASCN-SLTELPELP-----QSLKSLLVDNN-NLKALSD--LPPLLEYLGV  105 (353)
T ss_dssp             HTCSEEECTTS-CCSCCCS--CCTTCSEEECCSS-CCSSCCCCC-----TTCCEEECCSS-CCSCCCS--CCTTCCEEEC
T ss_pred             cCCCEEEeCCC-CCCCCCC--CCCCCCEEECCCC-CCcccccch-----hhhhhhhhhhc-ccchhhh--hccccccccc
Confidence            36899999997 5788885  4679999999985 488888652     67999999884 5555543  3367999999


Q ss_pred             ccCCCceEeccCCCcccccccccccCccEEEEecCCCCeecccCCCCcchhhhcccCCCCCCccEEEEecCCchhhhHHh
Q 045021          133 SHCDNIRTLTVEDGIQSSSRRYTSYLLEKLEIWDCPSLTCIFSKNELPATLESLEVGNQPPSLKSLNVWSCSKLESIAER  212 (461)
Q Consensus       133 ~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~  212 (461)
                      +++. +..+|  .. ..      +++|+.|++++ ..+.. .+..              .+.+..+.+.+.....  ...
T Consensus       106 ~~n~-l~~lp--~~-~~------l~~L~~L~l~~-~~~~~-~~~~--------------~~~l~~l~~~~~~~~~--~~~  157 (353)
T d1jl5a_         106 SNNQ-LEKLP--EL-QN------SSFLKIIDVDN-NSLKK-LPDL--------------PPSLEFIAAGNNQLEE--LPE  157 (353)
T ss_dssp             CSSC-CSSCC--CC-TT------CTTCCEEECCS-SCCSC-CCCC--------------CTTCCEEECCSSCCSS--CCC
T ss_pred             cccc-ccccc--ch-hh------hccceeecccc-ccccc-cccc--------------cccccchhhccccccc--ccc
Confidence            8865 55565  32 22      45788888887 34333 2111              1346666665533222  123


Q ss_pred             hcCCCccceeeccccccceecccccCCCCCccEEEecCCCCCccCCCCCCCCCCcceEeeccCccccccccccCCCCCcc
Q 045021          213 LDNNTSLEMISILWCENLKFLPSGLHNLRQLQEIQLWGCENLVSFPEGGLPCAKLSKLGIYRCERLEALPKGLHNLKSLK  292 (461)
Q Consensus       213 ~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~l~~L~  292 (461)
                      +..++.++.+.+.++.. ...+..   ....+.+..... .+..++. ...++.|+.++++++. ...++.   ...++.
T Consensus       158 l~~l~~l~~L~l~~n~~-~~~~~~---~~~~~~l~~~~~-~~~~~~~-~~~l~~L~~l~l~~n~-~~~~~~---~~~~l~  227 (353)
T d1jl5a_         158 LQNLPFLTAIYADNNSL-KKLPDL---PLSLESIVAGNN-ILEELPE-LQNLPFLTTIYADNNL-LKTLPD---LPPSLE  227 (353)
T ss_dssp             CTTCTTCCEEECCSSCC-SSCCCC---CTTCCEEECCSS-CCSSCCC-CTTCTTCCEEECCSSC-CSSCCS---CCTTCC
T ss_pred             ccccccceecccccccc-cccccc---cccccccccccc-ccccccc-cccccccccccccccc-cccccc---cccccc
Confidence            55667777777776532 222211   123344444332 3333333 2345577777777653 222322   344556


Q ss_pred             EEEecc-cCCCcCCCCCCCCcceEEeecCchhhHHhhhhcccCC-CCcCEEEEecCCCcccccCccccccCCCCCCCCCc
Q 045021          293 KLRIGG-KLPSLEEDGLPTNLHFLKIERNMEIWKSMIERGFHKF-SSLRHLTIEGCDDDMVSFPPEDRRLGTTLPLPASL  370 (461)
Q Consensus       293 ~L~l~~-~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l-~~L~~L~l~~~~~~~~~i~~~~~~~~~~~~~~~~L  370 (461)
                      .+.+.+ .+...+  ..++++...++..+...       .+..+ ..........+  .+..++.          .+++|
T Consensus       228 ~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~-------~l~~l~~~~~~~~~~~~--~~~~~~~----------~~~~L  286 (353)
T d1jl5a_         228 ALNVRDNYLTDLP--ELPQSLTFLDVSENIFS-------GLSELPPNLYYLNASSN--EIRSLCD----------LPPSL  286 (353)
T ss_dssp             EEECCSSCCSCCC--CCCTTCCEEECCSSCCS-------EESCCCTTCCEEECCSS--CCSEECC----------CCTTC
T ss_pred             ccccccccccccc--ccccccccccccccccc-------ccccccchhcccccccC--ccccccc----------cCCCC
Confidence            666655 333322  22334555554433200       12222 23344444443  3443333          46799


Q ss_pred             ceeecCCCCCCcccccchhhccCCcEEEecCCCCCcccCCCCCcccccEeeccCCc
Q 045021          371 ASLTIGDFPNLERLSSSIVDLQNLKYLKLYDCPKLKYFSEKGLPSSLLRLYIDECP  426 (461)
Q Consensus       371 ~~L~l~~~~~l~~i~~~~~~~~~L~~L~l~~C~~l~~~~~~~~~~~L~~L~i~~c~  426 (461)
                      ++|++++| .++.+|.   .+++|+.|++++ ++|+++|.  .+++|++|++++|+
T Consensus       287 ~~L~Ls~N-~l~~lp~---~~~~L~~L~L~~-N~L~~l~~--~~~~L~~L~L~~N~  335 (353)
T d1jl5a_         287 EELNVSNN-KLIELPA---LPPRLERLIASF-NHLAEVPE--LPQNLKQLHVEYNP  335 (353)
T ss_dssp             CEEECCSS-CCSCCCC---CCTTCCEEECCS-SCCSCCCC--CCTTCCEEECCSSC
T ss_pred             CEEECCCC-ccCcccc---ccCCCCEEECCC-CcCCcccc--ccCCCCEEECcCCc
Confidence            99999995 7888874   468999999988 68999875  56799999999997

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=8.2e-14  Score=126.10  Aligned_cols=199  Identities=15%  Similarity=0.152  Sum_probs=131.3

Q ss_pred             cCCccEEEecCCcCCccccc-cCCCCCCcCEEEecCCcCcccccC--CCCCCCccEEEEeecCCccccCcccccCCCCcc
Q 045021           28 SCRLEYLILRYCKGLVKLPQ-SSLSLSSLREIEICRCHSLVSFPE--VALPSKLKKIEIRECDALKSLPEAWMCGTNSSL  104 (461)
Q Consensus        28 ~~~L~~L~l~~~~~l~~l~~-~~~~l~~L~~L~l~~~~~l~~~~~--~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L  104 (461)
                      |+++++|+|++ +.++.+|. .|.++++|++|+++++ .+..++.  ...+..++++.+.....++.++...+.. +++|
T Consensus        31 p~~~~~L~Ls~-N~i~~i~~~~f~~l~~L~~L~ls~n-~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~-l~~L  107 (284)
T d1ozna_          31 PAASQRIFLHG-NRISHVPAASFRACRNLTILWLHSN-VLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHG-LGRL  107 (284)
T ss_dssp             CTTCSEEECTT-SCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTT-CTTC
T ss_pred             CCCCCEEECcC-CcCCCCCHHHhhccccccccccccc-cccccccccccccccccccccccccccccccchhhcc-cccC
Confidence            47899999999 56788865 6999999999999986 5666655  6668899999888777788876655443 4899


Q ss_pred             cEEEeeCCCCCccccc--cCCCCCccEEecccCCCceEeccCCCc-ccccccccccCccEEEEecCCCCeecccCCCCcc
Q 045021          105 EILKIWSCHSLPYIAR--VQLPPSLKRLDISHCDNIRTLTVEDGI-QSSSRRYTSYLLEKLEIWDCPSLTCIFSKNELPA  181 (461)
Q Consensus       105 ~~L~l~~~~~l~~~~~--~~~~~~L~~L~l~~~~~~~~l~~~~~~-~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~  181 (461)
                      ++|+++++. +..++.  ...+++|+.+++.++. ++.++  ... ..      .++|+.|++++ ++++. ++...+..
T Consensus       108 ~~L~l~~n~-~~~~~~~~~~~~~~L~~l~l~~N~-l~~i~--~~~f~~------~~~L~~L~l~~-N~l~~-l~~~~f~~  175 (284)
T d1ozna_         108 HTLHLDRCG-LQELGPGLFRGLAALQYLYLQDNA-LQALP--DDTFRD------LGNLTHLFLHG-NRISS-VPERAFRG  175 (284)
T ss_dssp             CEEECTTSC-CCCCCTTTTTTCTTCCEEECCSSC-CCCCC--TTTTTT------CTTCCEEECCS-SCCCE-ECTTTTTT
T ss_pred             CEEecCCcc-cccccccccchhcccchhhhcccc-ccccC--hhHhcc------ccchhhccccc-Ccccc-cchhhhcc
Confidence            999999864 344333  2667899999999864 55665  332 22      44688888887 56665 44443332


Q ss_pred             hhhhcccCCCCCCccEEEEecCCchhhhHHhhcCCCccceeeccccccceecccccCCCCCccEEEecCC
Q 045021          182 TLESLEVGNQPPSLKSLNVWSCSKLESIAERLDNNTSLEMISILWCENLKFLPSGLHNLRQLQEIQLWGC  251 (461)
Q Consensus       182 ~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~  251 (461)
                      .          ++|+.+.+.++......+..+..+++|++|+++++......+.+++.+++|++|++++|
T Consensus       176 l----------~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N  235 (284)
T d1ozna_         176 L----------HSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN  235 (284)
T ss_dssp             C----------TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSS
T ss_pred             c----------cccchhhhhhccccccChhHhhhhhhcccccccccccccccccccccccccCEEEecCC
Confidence            2          45666666654333333445555566666666555332322344555556666666554

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.50  E-value=1.3e-13  Score=120.47  Aligned_cols=188  Identities=16%  Similarity=0.232  Sum_probs=127.9

Q ss_pred             cCCCccceeeccccccceecccccCCCCCccEEEecCCCCCccCCCCCCCCCCcceEeeccCccccccccccCCCCCccE
Q 045021          214 DNNTSLEMISILWCENLKFLPSGLHNLRQLQEIQLWGCENLVSFPEGGLPCAKLSKLGIYRCERLEALPKGLHNLKSLKK  293 (461)
Q Consensus       214 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~l~~L~~  293 (461)
                      ..+.+|+.|++.+| .+..++ .+..+++|++|++++| .+..+.. ...+++++++++++| .++.++ .+..+++|+.
T Consensus        38 ~~l~~L~~L~l~~~-~i~~l~-~l~~l~~L~~L~ls~n-~i~~~~~-l~~l~~l~~l~~~~n-~~~~i~-~l~~l~~L~~  111 (227)
T d1h6ua2          38 ADLDGITTLSAFGT-GVTTIE-GVQYLNNLIGLELKDN-QITDLAP-LKNLTKITELELSGN-PLKNVS-AIAGLQSIKT  111 (227)
T ss_dssp             HHHHTCCEEECTTS-CCCCCT-TGGGCTTCCEEECCSS-CCCCCGG-GTTCCSCCEEECCSC-CCSCCG-GGTTCTTCCE
T ss_pred             HHcCCcCEEECCCC-CCCcch-hHhcCCCCcEeecCCc-eeecccc-ccccccccccccccc-cccccc-cccccccccc
Confidence            34567777777776 455553 4677788888888876 3344332 344557888888775 344554 4677888888


Q ss_pred             EEecc-cCCCcCCCCCCCCcceEEeecCchhhHHhhhhcccCCCCcCEEEEecCCCcccccCccccccCCCCCCCCCcce
Q 045021          294 LRIGG-KLPSLEEDGLPTNLHFLKIERNMEIWKSMIERGFHKFSSLRHLTIEGCDDDMVSFPPEDRRLGTTLPLPASLAS  372 (461)
Q Consensus       294 L~l~~-~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~i~~~~~~~~~~~~~~~~L~~  372 (461)
                      +.+++ ....+......+.++.+.++++....    ...+..+++|++|++.+|  .+..++.  +      ..+++|++
T Consensus       112 l~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----~~~~~~~~~L~~L~l~~n--~~~~~~~--l------~~l~~L~~  177 (227)
T d1h6ua2         112 LDLTSTQITDVTPLAGLSNLQVLYLDLNQITN----ISPLAGLTNLQYLSIGNA--QVSDLTP--L------ANLSKLTT  177 (227)
T ss_dssp             EECTTSCCCCCGGGTTCTTCCEEECCSSCCCC----CGGGGGCTTCCEEECCSS--CCCCCGG--G------TTCTTCCE
T ss_pred             cccccccccccchhccccchhhhhchhhhhch----hhhhcccccccccccccc--ccccchh--h------ccccccee
Confidence            88877 55555555566778888887776221    113567788899998887  5544443  2      25678999


Q ss_pred             eecCCCCCCcccccchhhccCCcEEEecCCCCCcccCCCCCcccccEeeccC
Q 045021          373 LTIGDFPNLERLSSSIVDLQNLKYLKLYDCPKLKYFSEKGLPSSLLRLYIDE  424 (461)
Q Consensus       373 L~l~~~~~l~~i~~~~~~~~~L~~L~l~~C~~l~~~~~~~~~~~L~~L~i~~  424 (461)
                      |+++++ .+++++ .+..+++|++|++++| +++.++.-.-.++|++|++++
T Consensus       178 L~Ls~n-~l~~l~-~l~~l~~L~~L~Ls~N-~lt~i~~l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         178 LKADDN-KISDIS-PLASLPNLIEVHLKNN-QISDVSPLANTSNLFIVTLTN  226 (227)
T ss_dssp             EECCSS-CCCCCG-GGGGCTTCCEEECTTS-CCCBCGGGTTCTTCCEEEEEE
T ss_pred             cccCCC-ccCCCh-hhcCCCCCCEEECcCC-cCCCCcccccCCCCCEEEeeC
Confidence            999885 777774 4788899999999885 788887534458888888763

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=5.9e-15  Score=133.55  Aligned_cols=203  Identities=16%  Similarity=0.197  Sum_probs=117.1

Q ss_pred             CccEEEecCCcCCccccccCCCCCCcCEEEecCCcCcc-cccC-CCCCCCccEEEEeecCCccc-cCcccccCCCCcccE
Q 045021           30 RLEYLILRYCKGLVKLPQSSLSLSSLREIEICRCHSLV-SFPE-VALPSKLKKIEIRECDALKS-LPEAWMCGTNSSLEI  106 (461)
Q Consensus        30 ~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~-~~~~-~~~l~~L~~L~l~~~~~l~~-~~~~~~~~~~~~L~~  106 (461)
                      .+..+.+.... ............+|++|++++|..-. .+.. +..+++|++|++.+|. +.+ .+..+..  +++|++
T Consensus        24 ~~~~lrl~~~~-~~~~~~~~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~-l~~~~~~~l~~--~~~L~~   99 (284)
T d2astb2          24 GVIAFRCPRSF-MDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLR-LSDPIVNTLAK--NSNLVR   99 (284)
T ss_dssp             TCSEEECTTCE-ECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCB-CCHHHHHHHTT--CTTCSE
T ss_pred             cceEeeccccc-cccchhhhccCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccC-CCcHHHHHHhc--CCCCcC
Confidence            34555554421 12222233345678888888763221 2222 5667888888888775 332 2333333  377888


Q ss_pred             EEeeCCCCCccccc---cCCCCCccEEecccCCCceEeccCCCcccccccccccCccEEEEecCC-CCeecccCCCCcch
Q 045021          107 LKIWSCHSLPYIAR---VQLPPSLKRLDISHCDNIRTLTVEDGIQSSSRRYTSYLLEKLEIWDCP-SLTCIFSKNELPAT  182 (461)
Q Consensus       107 L~l~~~~~l~~~~~---~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~-~l~~~~~~~~~~~~  182 (461)
                      |++++|..+++...   ...+++|++|++++|..+.+......+..     ..++|+.|++++|. .+++    ..+   
T Consensus       100 L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~-----~~~~L~~L~l~~~~~~i~~----~~l---  167 (284)
T d2astb2         100 LNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAH-----VSETITQLNLSGYRKNLQK----SDL---  167 (284)
T ss_dssp             EECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHH-----SCTTCCEEECCSCGGGSCH----HHH---
T ss_pred             ccccccccccccccchhhHHHHhccccccccccccccccchhhhcc-----cccccchhhhccccccccc----ccc---
Confidence            88888777765322   14567888888888765542110011111     12468888887753 2332    001   


Q ss_pred             hhhcccCCCCCCccEEEEecCCchhh-hHHhhcCCCccceeecccccccee-cccccCCCCCccEEEecCC
Q 045021          183 LESLEVGNQPPSLKSLNVWSCSKLES-IAERLDNNTSLEMISILWCENLKF-LPSGLHNLRQLQEIQLWGC  251 (461)
Q Consensus       183 ~~~~~~~~~~~~L~~L~l~~~~~l~~-~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~  251 (461)
                         ..+...+++|++|++.+|..++. ....+..+++|++|++++|..+.+ ....++++++|+.|++++|
T Consensus       168 ---~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         168 ---STLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             ---HHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             ---cccccccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence               11122346788888888766653 344667788888888888876642 2345677888888888876

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=5.6e-12  Score=110.89  Aligned_cols=63  Identities=19%  Similarity=0.173  Sum_probs=29.5

Q ss_pred             ccEEEEecCCchhhhHHhhcCCCccceeeccccccceeccc-ccCCCCCccEEEecCCCCCccCCC
Q 045021          195 LKSLNVWSCSKLESIAERLDNNTSLEMISILWCENLKFLPS-GLHNLRQLQEIQLWGCENLVSFPE  259 (461)
Q Consensus       195 L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~l~~l~~  259 (461)
                      ++.+.+.+ ..+..++..+...++++++....+..+..+|. .+.++++|+.|++++| .+..++.
T Consensus       155 l~~L~l~~-n~l~~i~~~~~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N-~l~~l~~  218 (242)
T d1xwdc1         155 SVILWLNK-NGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRT-RIHSLPS  218 (242)
T ss_dssp             CEEEECCS-SCCCEECTTTTTTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTS-CCCCCCS
T ss_pred             ceeeeccc-ccccccccccccchhhhccccccccccccccHHHhcCCCCCCEEECCCC-cCCccCH
Confidence            45555544 23333333333334444443333334555543 3556666666666665 3445444

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=2.1e-14  Score=129.89  Aligned_cols=182  Identities=13%  Similarity=0.150  Sum_probs=98.7

Q ss_pred             CccEEEEecCCchh-hhHHhhcCCCccceeeccccccceecccccCCCCCccEEEecCCCCCcc--CCCCCCCCCCcceE
Q 045021          194 SLKSLNVWSCSKLE-SIAERLDNNTSLEMISILWCENLKFLPSGLHNLRQLQEIQLWGCENLVS--FPEGGLPCAKLSKL  270 (461)
Q Consensus       194 ~L~~L~l~~~~~l~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~--l~~~~~~~~~L~~L  270 (461)
                      +|++|++++|.... .+...+..+++|++|++.+|..-...+..++.+++|++|++++|..+.+  +......+++|++|
T Consensus        47 ~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L  126 (284)
T d2astb2          47 RVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDEL  126 (284)
T ss_dssp             CCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEE
T ss_pred             CCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhcccc
Confidence            58888888764332 2444677888888888888753334455567778888888888766543  11122345678888


Q ss_pred             eeccCcccccc--ccccCCCCCccEEEecccCCCcCCCCCCCCcceEEeecCc-hhhHHhhhhcccCCCCcCEEEEecCC
Q 045021          271 GIYRCERLEAL--PKGLHNLKSLKKLRIGGKLPSLEEDGLPTNLHFLKIERNM-EIWKSMIERGFHKFSSLRHLTIEGCD  347 (461)
Q Consensus       271 ~l~~c~~~~~~--~~~~~~l~~L~~L~l~~~~~~l~~~~~~~~L~~L~l~~~~-~l~~~~~~~~~~~l~~L~~L~l~~~~  347 (461)
                      ++++|..++.-  ...+..                    .+++|+.|++++|. .+++......+.++++|++|++++| 
T Consensus       127 ~ls~c~~~~~~~~~~~~~~--------------------~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~-  185 (284)
T d2astb2         127 NLSWCFDFTEKHVQVAVAH--------------------VSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDS-  185 (284)
T ss_dssp             ECCCCTTCCHHHHHHHHHH--------------------SCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTC-
T ss_pred             ccccccccccccchhhhcc--------------------cccccchhhhcccccccccccccccccccccccccccccc-
Confidence            88777665421  111111                    12344555555442 2232222223345566666666654 


Q ss_pred             CcccccCccccccCCCCCCCCCcceeecCCCCCCccc-ccchhhccCCcEEEecCC
Q 045021          348 DDMVSFPPEDRRLGTTLPLPASLASLTIGDFPNLERL-SSSIVDLQNLKYLKLYDC  402 (461)
Q Consensus       348 ~~~~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i-~~~~~~~~~L~~L~l~~C  402 (461)
                      ..+..-....+      ..+++|++|++++|+.+.+- ...+.++++|+.|++.+|
T Consensus       186 ~~itd~~~~~l------~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         186 VMLKNDCFQEF------FQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             TTCCGGGGGGG------GGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             cCCCchhhhhh------cccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence            23321111102      13446666666666555322 134455666666666665

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=1e-12  Score=115.71  Aligned_cols=194  Identities=16%  Similarity=0.190  Sum_probs=105.3

Q ss_pred             ccceeeccccccceeccc-ccCCCCCccEEEecCCCCCccCCCC-CCCCCCcceEeeccCccccccc-cccCCCCCccEE
Q 045021          218 SLEMISILWCENLKFLPS-GLHNLRQLQEIQLWGCENLVSFPEG-GLPCAKLSKLGIYRCERLEALP-KGLHNLKSLKKL  294 (461)
Q Consensus       218 ~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~l~~l~~~-~~~~~~L~~L~l~~c~~~~~~~-~~~~~l~~L~~L  294 (461)
                      ++++|+++++ .+..++. .|.++++|++|++++|.....++.. ...++.++++.+..+..+..++ ..+..+++|+++
T Consensus        30 ~l~~L~Ls~n-~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l  108 (242)
T d1xwdc1          30 NAIELRFVLT-KLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL  108 (242)
T ss_dssp             CCSEEEEESC-CCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCEE
T ss_pred             CCCEEECcCC-cCCccChhHhhccchhhhhhhccccccceeecccccccccccccccccccccccccccccccccccccc
Confidence            4444555443 2333332 3455555555555555333333321 2234455555555444444332 345666666666


Q ss_pred             Eecc-cCCCcCCCCCCCCcceEEe--ecCchhhHHhhhhcccCC-CCcCEEEEecCCCcccccCccccccCCCCCCCCCc
Q 045021          295 RIGG-KLPSLEEDGLPTNLHFLKI--ERNMEIWKSMIERGFHKF-SSLRHLTIEGCDDDMVSFPPEDRRLGTTLPLPASL  370 (461)
Q Consensus       295 ~l~~-~~~~l~~~~~~~~L~~L~l--~~~~~l~~~~~~~~~~~l-~~L~~L~l~~~~~~~~~i~~~~~~~~~~~~~~~~L  370 (461)
                      ++++ .+...+....+.+++.+..  .++..+.. .....+..+ ..++.|++.++  ++..++...+       ..+++
T Consensus       109 ~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~-i~~~~~~~~~~~l~~L~l~~n--~l~~i~~~~~-------~~~~l  178 (242)
T d1xwdc1         109 LISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHT-IERNSFVGLSFESVILWLNKN--GIQEIHNCAF-------NGTQL  178 (242)
T ss_dssp             EEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCE-ECTTSSTTSBSSCEEEECCSS--CCCEECTTTT-------TTCCE
T ss_pred             ccchhhhccccccccccccccccccccccccccc-ccccccccccccceeeecccc--cccccccccc-------cchhh
Confidence            6666 5555444444444444432  22222221 111223443 36777888876  7777776522       34567


Q ss_pred             ceeecCCCCCCccccc-chhhccCCcEEEecCCCCCcccCCCCCcccccEeeccC
Q 045021          371 ASLTIGDFPNLERLSS-SIVDLQNLKYLKLYDCPKLKYFSEKGLPSSLLRLYIDE  424 (461)
Q Consensus       371 ~~L~l~~~~~l~~i~~-~~~~~~~L~~L~l~~C~~l~~~~~~~~~~~L~~L~i~~  424 (461)
                      +++....++.++.++. .+.++++|+.|++++ ++++.+|...+ .++..|.+-+
T Consensus       179 ~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~-N~l~~l~~~~~-~~l~~L~~l~  231 (242)
T d1xwdc1         179 DELNLSDNNNLEELPNDVFHGASGPVILDISR-TRIHSLPSYGL-ENLKKLRARS  231 (242)
T ss_dssp             EEEECTTCTTCCCCCTTTTTTSCCCSEEECTT-SCCCCCCSSSC-TTCCEEESSS
T ss_pred             hccccccccccccccHHHhcCCCCCCEEECCC-CcCCccCHHHH-cCCcccccCc
Confidence            7776656678888874 468889999999988 77888877443 5555554433

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.42  E-value=9.1e-13  Score=112.27  Aligned_cols=160  Identities=18%  Similarity=0.174  Sum_probs=93.1

Q ss_pred             CCCccEEEecCCCCCccCCCCCCCCCCcceEeeccCccccccccccCCCCCccEEEecc-cCCCcCCCCCCCCcceEEee
Q 045021          240 LRQLQEIQLWGCENLVSFPEGGLPCAKLSKLGIYRCERLEALPKGLHNLKSLKKLRIGG-KLPSLEEDGLPTNLHFLKIE  318 (461)
Q Consensus       240 l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~l~~L~~L~l~~-~~~~l~~~~~~~~L~~L~l~  318 (461)
                      ++++++|+++++ .+.++.. ...+++|++|++++| .++.++. +.++++|++|++++ ....++....+++|+.|+++
T Consensus        39 l~~l~~L~l~~~-~i~~l~~-l~~l~nL~~L~Ls~N-~l~~~~~-l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~  114 (199)
T d2omxa2          39 LDQVTTLQADRL-GIKSIDG-VEYLNNLTQINFSNN-QLTDITP-LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLF  114 (199)
T ss_dssp             HTTCCEEECTTS-CCCCCTT-GGGCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEECC
T ss_pred             hcCCCEEECCCC-CCCCccc-cccCCCcCcCccccc-cccCccc-ccCCccccccccccccccccccccccccccccccc
Confidence            455666666655 3344332 233456666666664 4455543 66666777777766 55555545556677777776


Q ss_pred             cCchhhHHhhhhcccCCCCcCEEEEecCCCcccccCccccccCCCCCCCCCcceeecCCCCCCcccccchhhccCCcEEE
Q 045021          319 RNMEIWKSMIERGFHKFSSLRHLTIEGCDDDMVSFPPEDRRLGTTLPLPASLASLTIGDFPNLERLSSSIVDLQNLKYLK  398 (461)
Q Consensus       319 ~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~L~~L~  398 (461)
                      +|.... .   ..+..+++|+.|++++|  ++..++.  +      ...++|+.|++.++ .++.++ .+.++++|++|+
T Consensus       115 ~~~~~~-~---~~~~~l~~L~~L~l~~n--~l~~~~~--l------~~~~~L~~L~l~~n-~l~~l~-~l~~l~~L~~L~  178 (199)
T d2omxa2         115 NNQITD-I---DPLKNLTNLNRLELSSN--TISDISA--L------SGLTSLQQLNFSSN-QVTDLK-PLANLTTLERLD  178 (199)
T ss_dssp             SSCCCC-C---GGGTTCTTCSEEECCSS--CCCCCGG--G------TTCTTCSEEECCSS-CCCCCG-GGTTCTTCCEEE
T ss_pred             cccccc-c---cccchhhhhHHhhhhhh--hhccccc--c------cccccccccccccc-cccCCc-cccCCCCCCEEE
Confidence            665322 1   13556777777777776  5555543  2      25567777777773 566663 466777777777


Q ss_pred             ecCCCCCcccCCCCCcccccEe
Q 045021          399 LYDCPKLKYFSEKGLPSSLLRL  420 (461)
Q Consensus       399 l~~C~~l~~~~~~~~~~~L~~L  420 (461)
                      +++ +++++++.-..+++|++|
T Consensus       179 ls~-N~i~~i~~l~~L~~L~~L  199 (199)
T d2omxa2         179 ISS-NKVSDISVLAKLTNLESL  199 (199)
T ss_dssp             CCS-SCCCCCGGGGGCTTCSEE
T ss_pred             CCC-CCCCCCccccCCCCCCcC
Confidence            777 457666542223455443

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.41  E-value=1.9e-12  Score=112.73  Aligned_cols=76  Identities=14%  Similarity=0.138  Sum_probs=47.1

Q ss_pred             CCccEEEEecCCchhhhHHhhcCCCccceeeccccccceecccccCCCCCccEEEecCCCCCccCCCCCCCCCCcceEee
Q 045021          193 PSLKSLNVWSCSKLESIAERLDNNTSLEMISILWCENLKFLPSGLHNLRQLQEIQLWGCENLVSFPEGGLPCAKLSKLGI  272 (461)
Q Consensus       193 ~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l  272 (461)
                      ++|+.|.+.++.. .... .+..+++|++|++++| .+..++. ++++++|++|++++| .+..++. ...+++|+.|++
T Consensus       151 ~~L~~L~l~~n~~-~~~~-~l~~l~~L~~L~Ls~n-~l~~l~~-l~~l~~L~~L~Ls~N-~lt~i~~-l~~l~~L~~L~l  224 (227)
T d1h6ua2         151 TNLQYLSIGNAQV-SDLT-PLANLSKLTTLKADDN-KISDISP-LASLPNLIEVHLKNN-QISDVSP-LANTSNLFIVTL  224 (227)
T ss_dssp             TTCCEEECCSSCC-CCCG-GGTTCTTCCEEECCSS-CCCCCGG-GGGCTTCCEEECTTS-CCCBCGG-GTTCTTCCEEEE
T ss_pred             ccccccccccccc-ccch-hhcccccceecccCCC-ccCCChh-hcCCCCCCEEECcCC-cCCCCcc-cccCCCCCEEEe
Confidence            3566666666432 2222 3566777777777776 4555443 667778888888877 5666553 334567777777


Q ss_pred             cc
Q 045021          273 YR  274 (461)
Q Consensus       273 ~~  274 (461)
                      ++
T Consensus       225 sn  226 (227)
T d1h6ua2         225 TN  226 (227)
T ss_dssp             EE
T ss_pred             eC
Confidence            54

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.40  E-value=1e-12  Score=112.95  Aligned_cols=98  Identities=20%  Similarity=0.229  Sum_probs=43.3

Q ss_pred             CccceeeccccccceecccccCCCCCccEEEecCCCCCccCCCCCCCCCCcceEeeccCccccccccccCCCCCccEEEe
Q 045021          217 TSLEMISILWCENLKFLPSGLHNLRQLQEIQLWGCENLVSFPEGGLPCAKLSKLGIYRCERLEALPKGLHNLKSLKKLRI  296 (461)
Q Consensus       217 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~l~~L~~L~l  296 (461)
                      .+|++|++.++ .+..++ .+..+++|++|++++| .+..++. ...+++|++|++++| .++.++ .+..+++|+.|++
T Consensus        46 ~~L~~L~l~~~-~i~~l~-~l~~l~~L~~L~L~~n-~i~~l~~-~~~l~~L~~L~l~~n-~i~~l~-~l~~l~~L~~L~l  119 (210)
T d1h6ta2          46 NSIDQIIANNS-DIKSVQ-GIQYLPNVTKLFLNGN-KLTDIKP-LANLKNLGWLFLDEN-KVKDLS-SLKDLKKLKSLSL  119 (210)
T ss_dssp             HTCCEEECTTS-CCCCCT-TGGGCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSS-CCCCGG-GGTTCTTCCEEEC
T ss_pred             cCccEEECcCC-CCCCch-hHhhCCCCCEEeCCCc-cccCccc-cccCccccccccccc-cccccc-ccccccccccccc
Confidence            34555555554 333332 2444555555555554 3333332 123345555555543 334443 2444555555555


Q ss_pred             cc-cCCCcCCCCCCCCcceEEeecC
Q 045021          297 GG-KLPSLEEDGLPTNLHFLKIERN  320 (461)
Q Consensus       297 ~~-~~~~l~~~~~~~~L~~L~l~~~  320 (461)
                      ++ ....++....++.++.+++++|
T Consensus       120 ~~~~~~~~~~l~~l~~l~~l~~~~n  144 (210)
T d1h6ta2         120 EHNGISDINGLVHLPQLESLYLGNN  144 (210)
T ss_dssp             TTSCCCCCGGGGGCTTCCEEECCSS
T ss_pred             ccccccccccccccccccccccccc
Confidence            44 3333333333334444444443

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.39  E-value=9.6e-13  Score=113.11  Aligned_cols=165  Identities=18%  Similarity=0.163  Sum_probs=121.6

Q ss_pred             CCCCccEEEecCCCCCccCCCCCCCCCCcceEeeccCccccccccccCCCCCccEEEecc-cCCCcCCCCCCCCcceEEe
Q 045021          239 NLRQLQEIQLWGCENLVSFPEGGLPCAKLSKLGIYRCERLEALPKGLHNLKSLKKLRIGG-KLPSLEEDGLPTNLHFLKI  317 (461)
Q Consensus       239 ~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~l~~L~~L~l~~-~~~~l~~~~~~~~L~~L~l  317 (461)
                      .+.+|+.|++++| .+..++. ...+++|++|++++| .++.++. ++.+++|++|++++ .+..++....+++|+.|++
T Consensus        44 ~L~~L~~L~l~~~-~i~~l~~-l~~l~~L~~L~L~~n-~i~~l~~-~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l  119 (210)
T d1h6ta2          44 ELNSIDQIIANNS-DIKSVQG-IQYLPNVTKLFLNGN-KLTDIKP-LANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSL  119 (210)
T ss_dssp             HHHTCCEEECTTS-CCCCCTT-GGGCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSSCCCCGGGGTTCTTCCEEEC
T ss_pred             HhcCccEEECcCC-CCCCchh-HhhCCCCCEEeCCCc-cccCccc-cccCcccccccccccccccccccccccccccccc
Confidence            3568888999887 5555543 345678999999886 5666653 67889999999988 7777776677788999999


Q ss_pred             ecCchhhHHhhhhcccCCCCcCEEEEecCCCcccccCccccccCCCCCCCCCcceeecCCCCCCcccccchhhccCCcEE
Q 045021          318 ERNMEIWKSMIERGFHKFSSLRHLTIEGCDDDMVSFPPEDRRLGTTLPLPASLASLTIGDFPNLERLSSSIVDLQNLKYL  397 (461)
Q Consensus       318 ~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~L~~L  397 (461)
                      ++|....  .  ..+..+++++.+++.++  .+...+..        ..+++|+.++++++ .+..++ .+..+++|++|
T Consensus       120 ~~~~~~~--~--~~l~~l~~l~~l~~~~n--~l~~~~~~--------~~l~~L~~l~l~~n-~l~~i~-~l~~l~~L~~L  183 (210)
T d1h6ta2         120 EHNGISD--I--NGLVHLPQLESLYLGNN--KITDITVL--------SRLTKLDTLSLEDN-QISDIV-PLAGLTKLQNL  183 (210)
T ss_dssp             TTSCCCC--C--GGGGGCTTCCEEECCSS--CCCCCGGG--------GGCTTCSEEECCSS-CCCCCG-GGTTCTTCCEE
T ss_pred             ccccccc--c--ccccccccccccccccc--cccccccc--------cccccccccccccc-cccccc-cccCCCCCCEE
Confidence            8887322  1  24677888999998887  55554442        25678999999984 677774 47788999999


Q ss_pred             EecCCCCCcccCCCCCcccccEeeccC
Q 045021          398 KLYDCPKLKYFSEKGLPSSLLRLYIDE  424 (461)
Q Consensus       398 ~l~~C~~l~~~~~~~~~~~L~~L~i~~  424 (461)
                      ++++ +++++++.-.-+++|++|++++
T Consensus       184 ~Ls~-N~i~~l~~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         184 YLSK-NHISDLRALAGLKNLDVLELFS  209 (210)
T ss_dssp             ECCS-SCCCBCGGGTTCTTCSEEEEEE
T ss_pred             ECCC-CCCCCChhhcCCCCCCEEEccC
Confidence            9988 5788876533358889888863

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.36  E-value=4e-12  Score=108.17  Aligned_cols=160  Identities=19%  Similarity=0.260  Sum_probs=112.7

Q ss_pred             CCccceeeccccccceecccccCCCCCccEEEecCCCCCccCCCCCCCCCCcceEeeccCccccccccccCCCCCccEEE
Q 045021          216 NTSLEMISILWCENLKFLPSGLHNLRQLQEIQLWGCENLVSFPEGGLPCAKLSKLGIYRCERLEALPKGLHNLKSLKKLR  295 (461)
Q Consensus       216 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~l~~L~~L~  295 (461)
                      +.++++|++.++ .+..+. .+..+++|++|++++| .+..++. ...+++|++|++++|. +..++ .+.++++|+.|+
T Consensus        39 l~~l~~L~l~~~-~i~~l~-~l~~l~nL~~L~Ls~N-~l~~~~~-l~~l~~L~~L~l~~n~-~~~~~-~l~~l~~L~~L~  112 (199)
T d2omxa2          39 LDQVTTLQADRL-GIKSID-GVEYLNNLTQINFSNN-QLTDITP-LKNLTKLVDILMNNNQ-IADIT-PLANLTNLTGLT  112 (199)
T ss_dssp             HTTCCEEECTTS-CCCCCT-TGGGCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSSC-CCCCG-GGTTCTTCSEEE
T ss_pred             hcCCCEEECCCC-CCCCcc-ccccCCCcCcCccccc-cccCccc-ccCCcccccccccccc-ccccc-cccccccccccc
Confidence            456777777765 344443 3666788888888876 4555543 3456678888887753 44444 377888888888


Q ss_pred             ecc-cCCCcCCCCCCCCcceEEeecCchhhHHhhhhcccCCCCcCEEEEecCCCcccccCccccccCCCCCCCCCcceee
Q 045021          296 IGG-KLPSLEEDGLPTNLHFLKIERNMEIWKSMIERGFHKFSSLRHLTIEGCDDDMVSFPPEDRRLGTTLPLPASLASLT  374 (461)
Q Consensus       296 l~~-~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~i~~~~~~~~~~~~~~~~L~~L~  374 (461)
                      +++ ....++....+++|+.|++++|. +.. .+  .+..+++|++|++.+|  .+..++.  +      ..+++|++|+
T Consensus       113 l~~~~~~~~~~~~~l~~L~~L~l~~n~-l~~-~~--~l~~~~~L~~L~l~~n--~l~~l~~--l------~~l~~L~~L~  178 (199)
T d2omxa2         113 LFNNQITDIDPLKNLTNLNRLELSSNT-ISD-IS--ALSGLTSLQQLNFSSN--QVTDLKP--L------ANLTTLERLD  178 (199)
T ss_dssp             CCSSCCCCCGGGTTCTTCSEEECCSSC-CCC-CG--GGTTCTTCSEEECCSS--CCCCCGG--G------TTCTTCCEEE
T ss_pred             ccccccccccccchhhhhHHhhhhhhh-hcc-cc--cccccccccccccccc--cccCCcc--c------cCCCCCCEEE
Confidence            888 55555555667789999998886 322 11  4678899999999987  6777664  3      3678999999


Q ss_pred             cCCCCCCcccccchhhccCCcEE
Q 045021          375 IGDFPNLERLSSSIVDLQNLKYL  397 (461)
Q Consensus       375 l~~~~~l~~i~~~~~~~~~L~~L  397 (461)
                      ++++ .+++++ .+..+++|+.|
T Consensus       179 ls~N-~i~~i~-~l~~L~~L~~L  199 (199)
T d2omxa2         179 ISSN-KVSDIS-VLAKLTNLESL  199 (199)
T ss_dssp             CCSS-CCCCCG-GGGGCTTCSEE
T ss_pred             CCCC-CCCCCc-cccCCCCCCcC
Confidence            9995 688884 57788888876

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.06  E-value=1.5e-10  Score=89.67  Aligned_cols=84  Identities=19%  Similarity=0.160  Sum_probs=47.6

Q ss_pred             hhhhhhhcCCccEEEecCCcCCccccccCCCCCCcCEEEecCCcCcccccCCCCCCCccEEEEeecCCccccCcccccCC
Q 045021           21 QQQLCELSCRLEYLILRYCKGLVKLPQSSLSLSSLREIEICRCHSLVSFPEVALPSKLKKIEIRECDALKSLPEAWMCGT  100 (461)
Q Consensus        21 l~~l~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~  100 (461)
                      +..+    ++|++|++++ +.++.+|..++.+++|+.|++++| .++.+|.++.+++|++|+++++. ++.++....-..
T Consensus        16 l~~l----~~L~~L~ls~-N~l~~lp~~~~~l~~L~~L~l~~N-~i~~l~~~~~l~~L~~L~l~~N~-i~~~~~~~~l~~   88 (124)
T d1dcea3          16 LEQL----LLVTHLDLSH-NRLRALPPALAALRCLEVLQASDN-ALENVDGVANLPRLQELLLCNNR-LQQSAAIQPLVS   88 (124)
T ss_dssp             GGGG----TTCCEEECCS-SCCCCCCGGGGGCTTCCEEECCSS-CCCCCGGGTTCSSCCEEECCSSC-CCSSSTTGGGGG
T ss_pred             cccC----CCCCEEECCC-CccCcchhhhhhhhcccccccccc-cccccCccccccccCeEECCCCc-cCCCCCchhhcC
Confidence            4555    6666666666 445666655666666666666664 45556556666666666666644 554442111111


Q ss_pred             CCcccEEEeeC
Q 045021          101 NSSLEILKIWS  111 (461)
Q Consensus       101 ~~~L~~L~l~~  111 (461)
                      +++|+.|++++
T Consensus        89 ~~~L~~L~l~~   99 (124)
T d1dcea3          89 CPRLVLLNLQG   99 (124)
T ss_dssp             CTTCCEEECTT
T ss_pred             CCCCCEEECCC
Confidence            25566666655

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.04  E-value=1.4e-10  Score=94.59  Aligned_cols=103  Identities=17%  Similarity=0.113  Sum_probs=83.1

Q ss_pred             CCccEEEecCCcCCccccccCCCCCCcCEEEecCCcCcccccCCCCCCCccEEEEeecCCccccCcccccCCCCcccEEE
Q 045021           29 CRLEYLILRYCKGLVKLPQSSLSLSSLREIEICRCHSLVSFPEVALPSKLKKIEIRECDALKSLPEAWMCGTNSSLEILK  108 (461)
Q Consensus        29 ~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~  108 (461)
                      .++++|+|++ .++..++..+..+++|++|++++| .+.+++.+..+++|++|++++|. +..++..+... +++|+.|+
T Consensus        18 ~~lr~L~L~~-n~I~~i~~~~~~l~~L~~L~Ls~N-~i~~l~~~~~l~~L~~L~ls~N~-i~~l~~~~~~~-l~~L~~L~   93 (162)
T d1a9na_          18 VRDRELDLRG-YKIPVIENLGATLDQFDAIDFSDN-EIRKLDGFPLLRRLKTLLVNNNR-ICRIGEGLDQA-LPDLTELI   93 (162)
T ss_dssp             TSCEEEECTT-SCCCSCCCGGGGTTCCSEEECCSS-CCCEECCCCCCSSCCEEECCSSC-CCEECSCHHHH-CTTCCEEE
T ss_pred             CcCcEEECCC-CCCCccCccccccccCCEEECCCC-CCCccCCcccCcchhhhhccccc-ccCCCcccccc-ccccccce
Confidence            6899999999 557888877788999999999997 67888778899999999999977 88887765432 38999999


Q ss_pred             eeCCCCCccccc---cCCCCCccEEecccCC
Q 045021          109 IWSCHSLPYIAR---VQLPPSLKRLDISHCD  136 (461)
Q Consensus       109 l~~~~~l~~~~~---~~~~~~L~~L~l~~~~  136 (461)
                      ++++ .++.++.   ...+++|+++++++++
T Consensus        94 L~~N-~i~~~~~l~~l~~l~~L~~L~l~~N~  123 (162)
T d1a9na_          94 LTNN-SLVELGDLDPLASLKSLTYLCILRNP  123 (162)
T ss_dssp             CCSC-CCCCGGGGGGGGGCTTCCEEECCSSG
T ss_pred             eccc-cccccccccccccccccchhhcCCCc
Confidence            9985 5555543   3667888888888875

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.03  E-value=5.2e-12  Score=121.82  Aligned_cols=180  Identities=19%  Similarity=0.112  Sum_probs=101.1

Q ss_pred             CCCCCccEEEecCCCCCcc-----CCCCCCCCCCcceEeeccCccccc----cccccCCCCCccEEEecc-cCC-----C
Q 045021          238 HNLRQLQEIQLWGCENLVS-----FPEGGLPCAKLSKLGIYRCERLEA----LPKGLHNLKSLKKLRIGG-KLP-----S  302 (461)
Q Consensus       238 ~~l~~L~~L~l~~~~~l~~-----l~~~~~~~~~L~~L~l~~c~~~~~----~~~~~~~l~~L~~L~l~~-~~~-----~  302 (461)
                      ...+.++.+.+.++.....     ..........++.+++++|.....    ....+...+.++.+++++ .+.     .
T Consensus       223 ~~~~~~~~l~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~  302 (460)
T d1z7xw1         223 ASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARL  302 (460)
T ss_dssp             HHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHH
T ss_pred             cccccccccchhhccccccccchhhcccccccccccccccccccccccccccccccccccccccccccccccccccccch
Confidence            3446667777766532111     111222234677777776543211    122334566777777766 321     1


Q ss_pred             cCC--CCCCCCcceEEeecCchhhHHhh--hhcccCCCCcCEEEEecCCCcccc-----cCccccccCCCCCCCCCccee
Q 045021          303 LEE--DGLPTNLHFLKIERNMEIWKSMI--ERGFHKFSSLRHLTIEGCDDDMVS-----FPPEDRRLGTTLPLPASLASL  373 (461)
Q Consensus       303 l~~--~~~~~~L~~L~l~~~~~l~~~~~--~~~~~~l~~L~~L~l~~~~~~~~~-----i~~~~~~~~~~~~~~~~L~~L  373 (461)
                      +..  ......|+.+++++|..-.....  .......++|++|++++|  .+..     +... +.     ...+.|++|
T Consensus       303 l~~~l~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N--~i~~~g~~~l~~~-l~-----~~~~~L~~L  374 (460)
T d1z7xw1         303 LCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNN--RLEDAGVRELCQG-LG-----QPGSVLRVL  374 (460)
T ss_dssp             HHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSS--BCHHHHHHHHHHH-HT-----STTCCCCEE
T ss_pred             hhccccccccccccccccccchhhhhhhhcccccccccchhhhheeee--cccCcccchhhhh-hh-----cccCCCCEE
Confidence            111  11234788888888762221111  112445678999999987  4432     2222 11     134579999


Q ss_pred             ecCCCCCCcc-----cccchhhccCCcEEEecCCCCCcccCCC-------CCcccccEeeccCCch
Q 045021          374 TIGDFPNLER-----LSSSIVDLQNLKYLKLYDCPKLKYFSEK-------GLPSSLLRLYIDECPL  427 (461)
Q Consensus       374 ~l~~~~~l~~-----i~~~~~~~~~L~~L~l~~C~~l~~~~~~-------~~~~~L~~L~i~~c~~  427 (461)
                      ++++| .+.+     +...+..+++|++|++++ ++++.-...       .-...|+.|++.++..
T Consensus       375 ~Ls~n-~i~~~~~~~l~~~l~~~~~L~~L~Ls~-N~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~~  438 (460)
T d1z7xw1         375 WLADC-DVSDSSCSSLAATLLANHSLRELDLSN-NCLGDAGILQLVESVRQPGCLLEQLVLYDIYW  438 (460)
T ss_dssp             ECTTS-CCCHHHHHHHHHHHHHCCCCCEEECCS-SSCCHHHHHHHHHHHTSTTCCCCEEECTTCCC
T ss_pred             ECCCC-CCChHHHHHHHHHHhcCCCCCEEECCC-CcCCHHHHHHHHHHHHhCCCccCEEECCCCCC
Confidence            99997 5643     335567789999999998 677652221       1124789999988753

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.03  E-value=4.4e-10  Score=94.64  Aligned_cols=84  Identities=20%  Similarity=0.381  Sum_probs=38.0

Q ss_pred             ccCCCCcCEEEEecCCCcccccCccccccCCCCCCCCCcceeecCCCCCCcccc-cchhhccCCcEEEecCCCCCcccCC
Q 045021          332 FHKFSSLRHLTIEGCDDDMVSFPPEDRRLGTTLPLPASLASLTIGDFPNLERLS-SSIVDLQNLKYLKLYDCPKLKYFSE  410 (461)
Q Consensus       332 ~~~l~~L~~L~l~~~~~~~~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~-~~~~~~~~L~~L~l~~C~~l~~~~~  410 (461)
                      +..+++|++|++++|  .+..++.+.+      ..+++|++|++++ +.++.++ ..|.++++|++|++++ ++|+.++.
T Consensus        50 f~~l~~L~~L~L~~N--~i~~~~~~~~------~~~~~L~~L~Ls~-N~l~~l~~~~F~~l~~L~~L~L~~-N~l~~i~~  119 (192)
T d1w8aa_          50 FGRLPHLVKLELKRN--QLTGIEPNAF------EGASHIQELQLGE-NKIKEISNKMFLGLHQLKTLNLYD-NQISCVMP  119 (192)
T ss_dssp             GGGCTTCCEEECCSS--CCCCBCTTTT------TTCTTCCEEECCS-CCCCEECSSSSTTCTTCCEEECCS-SCCCEECT
T ss_pred             cCCCceEeeeecccc--cccccccccc------ccccccceeeecc-ccccccCHHHHhCCCcccccccCC-ccccccCH
Confidence            444455555555544  3433333322      1344455555554 3444443 2344455555555555 44555444


Q ss_pred             CCC--cccccEeeccCC
Q 045021          411 KGL--PSSLLRLYIDEC  425 (461)
Q Consensus       411 ~~~--~~~L~~L~i~~c  425 (461)
                      ..+  .++|++|+++++
T Consensus       120 ~~f~~l~~L~~l~L~~N  136 (192)
T d1w8aa_         120 GSFEHLNSLTSLNLASN  136 (192)
T ss_dssp             TSSTTCTTCCEEECTTC
T ss_pred             HHhcCCccccccccccc
Confidence            322  344555555443

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.92  E-value=6.1e-10  Score=90.67  Aligned_cols=68  Identities=16%  Similarity=0.252  Sum_probs=31.7

Q ss_pred             ccCCCCcCEEEEecCCCcccccCccccccCCCCCCCCCcceeecCCCCCCcccc--cchhhccCCcEEEecCCCCCcccC
Q 045021          332 FHKFSSLRHLTIEGCDDDMVSFPPEDRRLGTTLPLPASLASLTIGDFPNLERLS--SSIVDLQNLKYLKLYDCPKLKYFS  409 (461)
Q Consensus       332 ~~~l~~L~~L~l~~~~~~~~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~--~~~~~~~~L~~L~l~~C~~l~~~~  409 (461)
                      +..+++|++|++++|  .+..++...+      ..+++|+.|++++ +.++.++  ..+..+++|++|++++ +.++..+
T Consensus        59 ~~~l~~L~~L~ls~N--~i~~l~~~~~------~~l~~L~~L~L~~-N~i~~~~~l~~l~~l~~L~~L~l~~-N~i~~~~  128 (162)
T d1a9na_          59 FPLLRRLKTLLVNNN--RICRIGEGLD------QALPDLTELILTN-NSLVELGDLDPLASLKSLTYLCILR-NPVTNKK  128 (162)
T ss_dssp             CCCCSSCCEEECCSS--CCCEECSCHH------HHCTTCCEEECCS-CCCCCGGGGGGGGGCTTCCEEECCS-SGGGGST
T ss_pred             cccCcchhhhhcccc--cccCCCcccc------ccccccccceecc-ccccccccccccccccccchhhcCC-Ccccccc
Confidence            344455555555554  4444443311      1334555555555 2444433  2344555555555555 3344443

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.83  E-value=3.7e-09  Score=81.68  Aligned_cols=32  Identities=31%  Similarity=0.490  Sum_probs=13.1

Q ss_pred             CcceEeeccCccccccccccCCCCCccEEEecc
Q 045021          266 KLSKLGIYRCERLEALPKGLHNLKSLKKLRIGG  298 (461)
Q Consensus       266 ~L~~L~l~~c~~~~~~~~~~~~l~~L~~L~l~~  298 (461)
                      +|++|+++++ .++.+|..+..+++|++|++++
T Consensus        21 ~L~~L~ls~N-~l~~lp~~~~~l~~L~~L~l~~   52 (124)
T d1dcea3          21 LVTHLDLSHN-RLRALPPALAALRCLEVLQASD   52 (124)
T ss_dssp             TCCEEECCSS-CCCCCCGGGGGCTTCCEEECCS
T ss_pred             CCCEEECCCC-ccCcchhhhhhhhccccccccc
Confidence            4444444432 2333433344444444444444

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.77  E-value=1.2e-10  Score=112.07  Aligned_cols=351  Identities=17%  Similarity=0.167  Sum_probs=161.3

Q ss_pred             hhhhhhhhhhcCCccEEEecCCcCCc-----cccccCCCCCCcCEEEecCCcCccc-----ccC-CC-CCCCccEEEEee
Q 045021           18 KDQQQQLCELSCRLEYLILRYCKGLV-----KLPQSSLSLSSLREIEICRCHSLVS-----FPE-VA-LPSKLKKIEIRE   85 (461)
Q Consensus        18 ~~~l~~l~~~~~~L~~L~l~~~~~l~-----~l~~~~~~l~~L~~L~l~~~~~l~~-----~~~-~~-~l~~L~~L~l~~   85 (461)
                      ...++.+    +++++|+|++|. ++     .+...+..+++|++|+|++|. +.+     +.. +. ...+|++|++++
T Consensus        20 ~~l~~~l----~~l~~L~L~~~~-i~~~~~~~l~~~L~~~~~L~~LdLs~N~-i~~~~~~~l~~~l~~~~~~L~~L~L~~   93 (460)
T d1z7xw1          20 AELLPLL----QQCQVVRLDDCG-LTEARCKDISSALRVNPALAELNLRSNE-LGDVGVHCVLQGLQTPSCKIQKLSLQN   93 (460)
T ss_dssp             HHHHHHH----TTCSEEEEESSC-CCHHHHHHHHHHHHTCTTCCEEECTTCC-CHHHHHHHHHHTTCSTTCCCCEEECTT
T ss_pred             HHHHHhC----CCCCEEEeCCCC-CCHHHHHHHHHHHhcCCCCCEEECcCCc-CChHHHHHHHHHHhcCCCCCCEEECCC
Confidence            3456666    888888888874 33     334456678888888888763 432     111 11 235788888888


Q ss_pred             cCCccccC-----cccccCCCCcccEEEeeCCCCCcccccc-------CCCCCccEEecccCCCceEeccCCCccccccc
Q 045021           86 CDALKSLP-----EAWMCGTNSSLEILKIWSCHSLPYIARV-------QLPPSLKRLDISHCDNIRTLTVEDGIQSSSRR  153 (461)
Q Consensus        86 ~~~l~~~~-----~~~~~~~~~~L~~L~l~~~~~l~~~~~~-------~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~~  153 (461)
                      |. +++..     ..+..  +++|++|+++++ .+++....       ............... ..  .  .+.......
T Consensus        94 n~-it~~~~~~l~~~l~~--~~~L~~L~L~~N-~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~-~~--~--~~~~~~~~~  164 (460)
T d1z7xw1          94 CC-LTGAGCGVLSSTLRT--LPTLQELHLSDN-LLGDAGLQLLCEGLLDPQCRLEKLQLEYCS-LS--A--ASCEPLASV  164 (460)
T ss_dssp             SC-CBGGGHHHHHHHTTS--CTTCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CB--G--GGHHHHHHH
T ss_pred             CC-ccccccccccchhhc--cccccccccccc-cchhhhhhhhhhcccccccccccccccccc-cc--h--hhhcccccc
Confidence            75 54422     22222  377888888774 23321110       011112222222111 00  0  000000000


Q ss_pred             -ccccCccEEEEecCCCCeecccCCCCcchhhhcccCCCCCCccEEEEecCCchh----hhHHhhcCCCccceeeccccc
Q 045021          154 -YTSYLLEKLEIWDCPSLTCIFSKNELPATLESLEVGNQPPSLKSLNVWSCSKLE----SIAERLDNNTSLEMISILWCE  228 (461)
Q Consensus       154 -~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~----~~~~~~~~l~~L~~L~l~~~~  228 (461)
                       ...+.++.+.++++. ... .........+     .........+...++....    .....+.....++.+.+.++.
T Consensus       165 l~~~~~~~~~~ls~~~-~~~-~~~~~~~~~l-----~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~n~  237 (460)
T d1z7xw1         165 LRAKPDFKELTVSNND-INE-AGVRVLCQGL-----KDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNK  237 (460)
T ss_dssp             HHHCTTCCEEECCSSB-CHH-HHHHHHHHHH-----HHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSB
T ss_pred             cccccccccccccccc-ccc-cccccccccc-----ccccccccccccccccccchhhhcccccccccccccccchhhcc
Confidence             012245555555422 111 0000000000     0011234555555542221    122234456667777776653


Q ss_pred             cce-----ecccccCCCCCccEEEecCCCCCccC----CCCCCCCCCcceEeeccCcccc----ccccc-cCCCCCccEE
Q 045021          229 NLK-----FLPSGLHNLRQLQEIQLWGCENLVSF----PEGGLPCAKLSKLGIYRCERLE----ALPKG-LHNLKSLKKL  294 (461)
Q Consensus       229 ~~~-----~~~~~~~~l~~L~~L~l~~~~~l~~l----~~~~~~~~~L~~L~l~~c~~~~----~~~~~-~~~l~~L~~L  294 (461)
                      ...     ...........++.+++++|......    .......+.++.++++++.--.    .+... ......|+.+
T Consensus       238 ~~~~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l  317 (460)
T d1z7xw1         238 LGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESL  317 (460)
T ss_dssp             CHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEE
T ss_pred             ccccccchhhcccccccccccccccccccccccccccccccccccccccccccccccccccccchhhccccccccccccc
Confidence            221     11223334567777777776322110    0011123467777776653211    11111 1234567777


Q ss_pred             Eecc-cCCCc-----CC-CCCCCCcceEEeecCchhhHHhh----hhcccCCCCcCEEEEecCCCcccc-----cCcccc
Q 045021          295 RIGG-KLPSL-----EE-DGLPTNLHFLKIERNMEIWKSMI----ERGFHKFSSLRHLTIEGCDDDMVS-----FPPEDR  358 (461)
Q Consensus       295 ~l~~-~~~~l-----~~-~~~~~~L~~L~l~~~~~l~~~~~----~~~~~~l~~L~~L~l~~~~~~~~~-----i~~~~~  358 (461)
                      ++++ .+...     .. ....++|++|++++|. +++...    .......+.|++|++++|  .+..     +... +
T Consensus       318 ~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~-i~~~g~~~l~~~l~~~~~~L~~L~Ls~n--~i~~~~~~~l~~~-l  393 (460)
T d1z7xw1         318 WVKSCSFTAACCSHFSSVLAQNRFLLELQISNNR-LEDAGVRELCQGLGQPGSVLRVLWLADC--DVSDSSCSSLAAT-L  393 (460)
T ss_dssp             ECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTS--CCCHHHHHHHHHH-H
T ss_pred             cccccchhhhhhhhcccccccccchhhhheeeec-ccCcccchhhhhhhcccCCCCEEECCCC--CCChHHHHHHHHH-H
Confidence            7776 32211     11 0223578888888776 433211    111234567888888887  4432     2221 1


Q ss_pred             ccCCCCCCCCCcceeecCCCCCCcc-----cccchh-hccCCcEEEecC
Q 045021          359 RLGTTLPLPASLASLTIGDFPNLER-----LSSSIV-DLQNLKYLKLYD  401 (461)
Q Consensus       359 ~~~~~~~~~~~L~~L~l~~~~~l~~-----i~~~~~-~~~~L~~L~l~~  401 (461)
                            ...++|++|+++++ .+.+     +...+. ....|+.|.+.+
T Consensus       394 ------~~~~~L~~L~Ls~N-~i~~~g~~~l~~~l~~~~~~L~~l~l~~  435 (460)
T d1z7xw1         394 ------LANHSLRELDLSNN-CLGDAGILQLVESVRQPGCLLEQLVLYD  435 (460)
T ss_dssp             ------HHCCCCCEEECCSS-SCCHHHHHHHHHHHTSTTCCCCEEECTT
T ss_pred             ------hcCCCCCEEECCCC-cCCHHHHHHHHHHHHhCCCccCEEECCC
Confidence                  12367888888874 5543     112222 223688888887

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.71  E-value=3.4e-08  Score=82.72  Aligned_cols=103  Identities=16%  Similarity=0.174  Sum_probs=60.8

Q ss_pred             CccEEEEecCCchhhh-HHhhcCCCccceeeccccccceecccccCCCCCccEEEecCCCCCccCCC-CCCCCCCcceEe
Q 045021          194 SLKSLNVWSCSKLESI-AERLDNNTSLEMISILWCENLKFLPSGLHNLRQLQEIQLWGCENLVSFPE-GGLPCAKLSKLG  271 (461)
Q Consensus       194 ~L~~L~l~~~~~l~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~  271 (461)
                      ++++|++.++.....+ ...+..+++|++|+++++......+..+..+++|++|++++| .+..++. ....+++|++|+
T Consensus        30 ~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N-~l~~l~~~~F~~l~~L~~L~  108 (192)
T d1w8aa_          30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN-KIKEISNKMFLGLHQLKTLN  108 (192)
T ss_dssp             TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC-CCCEECSSSSTTCTTCCEEE
T ss_pred             CCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeeccc-cccccCHHHHhCCCcccccc
Confidence            3555555553221212 224556667777777665444444556666777777777776 4555554 334466777777


Q ss_pred             eccCcccccc-ccccCCCCCccEEEecc
Q 045021          272 IYRCERLEAL-PKGLHNLKSLKKLRIGG  298 (461)
Q Consensus       272 l~~c~~~~~~-~~~~~~l~~L~~L~l~~  298 (461)
                      ++++ .++.+ +.+|..+++|++|++++
T Consensus       109 L~~N-~l~~i~~~~f~~l~~L~~l~L~~  135 (192)
T d1w8aa_         109 LYDN-QISCVMPGSFEHLNSLTSLNLAS  135 (192)
T ss_dssp             CCSS-CCCEECTTSSTTCTTCCEEECTT
T ss_pred             cCCc-cccccCHHHhcCCcccccccccc
Confidence            7774 34444 33567777888887766

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.65  E-value=3.7e-11  Score=101.68  Aligned_cols=102  Identities=13%  Similarity=0.124  Sum_probs=66.3

Q ss_pred             CCccEEEecC-CcCCccccccCCCCCCcCEEEecCCcCcccccCCCCCCCccEEEEeecCCccccCcccccCCCCcccEE
Q 045021           29 CRLEYLILRY-CKGLVKLPQSSLSLSSLREIEICRCHSLVSFPEVALPSKLKKIEIRECDALKSLPEAWMCGTNSSLEIL  107 (461)
Q Consensus        29 ~~L~~L~l~~-~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L  107 (461)
                      ...+.+++.+ .+.+..++..+..+++|++|++++| .++.++.+..+++|++|++++|. ++.++......  ++|+.|
T Consensus        23 ~~~~~~~l~~~~~~i~~l~~sl~~L~~L~~L~Ls~n-~I~~i~~l~~l~~L~~L~Ls~N~-i~~i~~~~~~~--~~L~~L   98 (198)
T d1m9la_          23 TEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTN-NIEKISSLSGMENLRILSLGRNL-IKKIENLDAVA--DTLEEL   98 (198)
T ss_dssp             TTCSCEECCBCCTTCCCCHHHHHHTTTCCEEECSEE-EESCCCCHHHHTTCCEEECCEEE-ECSCSSHHHHH--HHCCEE
T ss_pred             cccceeeeecccCchhhhhhHHhcccccceeECccc-CCCCcccccCCccccChhhcccc-ccccccccccc--cccccc
Confidence            4456666664 2455666777888888888888886 56777667778888888888865 66666443332  567777


Q ss_pred             EeeCCCCCccccccCCCCCccEEecccC
Q 045021          108 KIWSCHSLPYIARVQLPPSLKRLDISHC  135 (461)
Q Consensus       108 ~l~~~~~l~~~~~~~~~~~L~~L~l~~~  135 (461)
                      +++++ .++.++....+++|+.|+++++
T Consensus        99 ~l~~N-~i~~l~~~~~l~~L~~L~L~~N  125 (198)
T d1m9la_          99 WISYN-QIASLSGIEKLVNLRVLYMSNN  125 (198)
T ss_dssp             ECSEE-ECCCHHHHHHHHHSSEEEESEE
T ss_pred             ccccc-cccccccccccccccccccccc
Confidence            77663 4555444444455555555553

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.61  E-value=3.7e-10  Score=95.37  Aligned_cols=110  Identities=18%  Similarity=0.141  Sum_probs=44.5

Q ss_pred             cccccCCCCCccEEEecCCCCCccCCCCCCCCCCcceEeeccCccccccccccCCCCCccEEEecc-cCCCcCCCCCCCC
Q 045021          233 LPSGLHNLRQLQEIQLWGCENLVSFPEGGLPCAKLSKLGIYRCERLEALPKGLHNLKSLKKLRIGG-KLPSLEEDGLPTN  311 (461)
Q Consensus       233 ~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~l~~L~~L~l~~-~~~~l~~~~~~~~  311 (461)
                      ++.++..+++|++|++++| .+..++. ...+++|++|++++| .++.++.....+++|++|++++ .+..++....+++
T Consensus        40 l~~sl~~L~~L~~L~Ls~n-~I~~i~~-l~~l~~L~~L~Ls~N-~i~~i~~~~~~~~~L~~L~l~~N~i~~l~~~~~l~~  116 (198)
T d1m9la_          40 MDATLSTLKACKHLALSTN-NIEKISS-LSGMENLRILSLGRN-LIKKIENLDAVADTLEELWISYNQIASLSGIEKLVN  116 (198)
T ss_dssp             CHHHHHHTTTCCEEECSEE-EESCCCC-HHHHTTCCEEECCEE-EECSCSSHHHHHHHCCEEECSEEECCCHHHHHHHHH
T ss_pred             hhhHHhcccccceeECccc-CCCCccc-ccCCccccChhhccc-cccccccccccccccccccccccccccccccccccc
Confidence            3334444455555555443 2333321 222334444444443 2333333222333444444444 3333322223334


Q ss_pred             cceEEeecCchhhHHhhhhcccCCCCcCEEEEecC
Q 045021          312 LHFLKIERNMEIWKSMIERGFHKFSSLRHLTIEGC  346 (461)
Q Consensus       312 L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~  346 (461)
                      |++|++++|. +++......+..+++|++|++++|
T Consensus       117 L~~L~L~~N~-i~~~~~~~~l~~l~~L~~L~L~~N  150 (198)
T d1m9la_         117 LRVLYMSNNK-ITNWGEIDKLAALDKLEDLLLAGN  150 (198)
T ss_dssp             SSEEEESEEE-CCCHHHHHHHTTTTTCSEEEECSS
T ss_pred             ccccccccch-hccccccccccCCCccceeecCCC
Confidence            5555555443 111111113445555555555554

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.44  E-value=5.7e-07  Score=72.08  Aligned_cols=75  Identities=15%  Similarity=0.080  Sum_probs=37.2

Q ss_pred             EEecCCcCCccccccCCCCCCcCEEEecCCcCcccccC--CCCCCCccEEEEeecCCccccCcccccCCCCcccEEEeeC
Q 045021           34 LILRYCKGLVKLPQSSLSLSSLREIEICRCHSLVSFPE--VALPSKLKKIEIRECDALKSLPEAWMCGTNSSLEILKIWS  111 (461)
Q Consensus        34 L~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~--~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~  111 (461)
                      ++.++ .++.+.|..+..+++|++|++.+++.++.++.  +..+++|+.|+++++. ++.++...+.. +++|+.|++++
T Consensus        13 l~c~~-~~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~-l~~i~~~~f~~-l~~L~~L~Ls~   89 (156)
T d2ifga3          13 LRCTR-DGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSG-LRFVAPDAFHF-TPRLSRLNLSF   89 (156)
T ss_dssp             EECCS-SCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSC-CCEECTTGGGS-CSCCCEEECCS
T ss_pred             EEecC-CCCccCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccc-cCCcccccccc-cccccceeccC
Confidence            44443 23344455555555666666655444554543  4555566666665543 55554332222 25555555554

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.43  E-value=5.6e-07  Score=72.12  Aligned_cols=86  Identities=23%  Similarity=0.168  Sum_probs=53.2

Q ss_pred             ccCCCCcCEEEEecCCCcccccCccccccCCCCCCCCCcceeecCCCCCCcccc-cchhhccCCcEEEecCCCCCcccCC
Q 045021          332 FHKFSSLRHLTIEGCDDDMVSFPPEDRRLGTTLPLPASLASLTIGDFPNLERLS-SSIVDLQNLKYLKLYDCPKLKYFSE  410 (461)
Q Consensus       332 ~~~l~~L~~L~l~~~~~~~~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~-~~~~~~~~L~~L~l~~C~~l~~~~~  410 (461)
                      +..+++|++|++.++ ..++.++..++      ..+++|+.|++++ ++++.++ ..+..+++|++|++++ ++|+.++.
T Consensus        27 l~~l~~l~~L~l~~n-~~l~~i~~~~f------~~l~~L~~L~Ls~-N~l~~i~~~~f~~l~~L~~L~Ls~-N~l~~l~~   97 (156)
T d2ifga3          27 LPGAENLTELYIENQ-QHLQHLELRDL------RGLGELRNLTIVK-SGLRFVAPDAFHFTPRLSRLNLSF-NALESLSW   97 (156)
T ss_dssp             SCSCSCCSEEECCSC-SSCCEECGGGS------CSCCCCSEEECCS-SCCCEECTTGGGSCSCCCEEECCS-SCCSCCCS
T ss_pred             ccCccccCeeecCCC-ccccccCchhh------ccccccCcceeec-cccCCcccccccccccccceeccC-CCCcccCh
Confidence            455566677776654 34666665434      2456777777776 4666664 4456677777777777 66776666


Q ss_pred             CCC-cccccEeeccCCc
Q 045021          411 KGL-PSSLLRLYIDECP  426 (461)
Q Consensus       411 ~~~-~~~L~~L~i~~c~  426 (461)
                      ..+ ..+|+.|+++++|
T Consensus        98 ~~~~~~~l~~L~L~~Np  114 (156)
T d2ifga3          98 KTVQGLSLQELVLSGNP  114 (156)
T ss_dssp             TTTCSCCCCEEECCSSC
T ss_pred             hhhccccccccccCCCc
Confidence            433 3467777777654

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.37  E-value=3.2e-08  Score=91.10  Aligned_cols=222  Identities=14%  Similarity=0.093  Sum_probs=113.2

Q ss_pred             CCccEEEEecCCch----hhhHHhhcCCCccceeeccccccc----------eecccccCCCCCccEEEecCCCCCcc--
Q 045021          193 PSLKSLNVWSCSKL----ESIAERLDNNTSLEMISILWCENL----------KFLPSGLHNLRQLQEIQLWGCENLVS--  256 (461)
Q Consensus       193 ~~L~~L~l~~~~~l----~~~~~~~~~l~~L~~L~l~~~~~~----------~~~~~~~~~l~~L~~L~l~~~~~l~~--  256 (461)
                      ..++.|+++++..-    ..+...+...++|+.+++.++..-          ..+...+..+++|+.|++++|. +..  
T Consensus        31 ~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~-i~~~~  109 (344)
T d2ca6a1          31 DSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNA-FGPTA  109 (344)
T ss_dssp             SCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCC-CCTTT
T ss_pred             CCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccccc-ccccc
Confidence            46888888775221    223335667778888888754211          1123344556788888888763 222  


Q ss_pred             ---CCCCCCCCCCcceEeeccCcccc----cccc---------ccCCCCCccEEEecc-cCCC-----cCC-CCCCCCcc
Q 045021          257 ---FPEGGLPCAKLSKLGIYRCERLE----ALPK---------GLHNLKSLKKLRIGG-KLPS-----LEE-DGLPTNLH  313 (461)
Q Consensus       257 ---l~~~~~~~~~L~~L~l~~c~~~~----~~~~---------~~~~l~~L~~L~l~~-~~~~-----l~~-~~~~~~L~  313 (461)
                         +.......++|+.|++++|..-.    .+..         .....+.|+.+.+++ .+..     +.. ....++|+
T Consensus       110 ~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~  189 (344)
T d2ca6a1         110 QEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLH  189 (344)
T ss_dssp             HHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCC
T ss_pred             ccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccccccccccccchhhhhhhhc
Confidence               11111234578888887764211    0000         113456677777766 2221     111 02345677


Q ss_pred             eEEeecCchhhHHh---hhhcccCCCCcCEEEEecCCCcccc-----cCccccccCCCCCCCCCcceeecCCCCCCccc-
Q 045021          314 FLKIERNMEIWKSM---IERGFHKFSSLRHLTIEGCDDDMVS-----FPPEDRRLGTTLPLPASLASLTIGDFPNLERL-  384 (461)
Q Consensus       314 ~L~l~~~~~l~~~~---~~~~~~~l~~L~~L~l~~~~~~~~~-----i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i-  384 (461)
                      +|++++|..-....   ....+..+++|++|++++|  .+..     +... +      ...++|++|++++| .+... 
T Consensus       190 ~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N--~i~~~g~~~L~~~-l------~~~~~L~~L~Ls~n-~i~~~g  259 (344)
T d2ca6a1         190 TVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDN--TFTHLGSSALAIA-L------KSWPNLRELGLNDC-LLSARG  259 (344)
T ss_dssp             EEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSS--CCHHHHHHHHHHH-G------GGCTTCCEEECTTC-CCCHHH
T ss_pred             ccccccccccccccccchhhhhcchhhhcccccccc--ccccccccccccc-c------cccccchhhhhhcC-ccCchh
Confidence            77777765222111   1223556677777777776  3321     2111 1      13456777777775 34321 


Q ss_pred             ----ccchhh--ccCCcEEEecCCCCCcccCCC-------CCcccccEeeccCCc
Q 045021          385 ----SSSIVD--LQNLKYLKLYDCPKLKYFSEK-------GLPSSLLRLYIDECP  426 (461)
Q Consensus       385 ----~~~~~~--~~~L~~L~l~~C~~l~~~~~~-------~~~~~L~~L~i~~c~  426 (461)
                          ...+..  .+.|++|++++ ++|+.-...       .-.++|++|+++++.
T Consensus       260 ~~~l~~~l~~~~~~~L~~L~ls~-N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~  313 (344)
T d2ca6a1         260 AAAVVDAFSKLENIGLQTLRLQY-NEIELDAVRTLKTVIDEKMPDLLFLELNGNR  313 (344)
T ss_dssp             HHHHHHHHHTCSSCCCCEEECCS-SCCBHHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred             hHHHHHHhhhccCCCCCEEECCC-CcCChHHHHHHHHHHHccCCCCCEEECCCCc
Confidence                122222  34677777777 455542110       013567777776654

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.35  E-value=1.5e-08  Score=93.43  Aligned_cols=138  Identities=14%  Similarity=0.169  Sum_probs=80.3

Q ss_pred             CCcceEeeccCcc----ccccccccCCCCCccEEEecc-cCCC------cC-CCCCCCCcceEEeecCchhhHHh---hh
Q 045021          265 AKLSKLGIYRCER----LEALPKGLHNLKSLKKLRIGG-KLPS------LE-EDGLPTNLHFLKIERNMEIWKSM---IE  329 (461)
Q Consensus       265 ~~L~~L~l~~c~~----~~~~~~~~~~l~~L~~L~l~~-~~~~------l~-~~~~~~~L~~L~l~~~~~l~~~~---~~  329 (461)
                      +.|+.+.++++..    ...+...+...+.|++|++++ .+..      +. .....++|+.|++++|. +++..   ..
T Consensus       158 ~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~-i~~~g~~~L~  236 (344)
T d2ca6a1         158 PPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNT-FTHLGSSALA  236 (344)
T ss_dssp             CCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSC-CHHHHHHHHH
T ss_pred             cccceeecccccccccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhccccccccc-cccccccccc
Confidence            3566666665421    112333445667788888777 3321      11 12345789999999886 33321   12


Q ss_pred             hcccCCCCcCEEEEecCCCcccccCccccccCCCCCCCCCcceeecCCCCCCcc-----cccchh-hccCCcEEEecCCC
Q 045021          330 RGFHKFSSLRHLTIEGCDDDMVSFPPEDRRLGTTLPLPASLASLTIGDFPNLER-----LSSSIV-DLQNLKYLKLYDCP  403 (461)
Q Consensus       330 ~~~~~l~~L~~L~l~~~~~~~~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~-----i~~~~~-~~~~L~~L~l~~C~  403 (461)
                      ..+..+++|++|++++|  .+..-....++........++|++|+++++ .+..     +...+. ++++|++|++++ +
T Consensus       237 ~~l~~~~~L~~L~Ls~n--~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N-~i~~~~~~~l~~~l~~~~~~L~~L~l~~-N  312 (344)
T d2ca6a1         237 IALKSWPNLRELGLNDC--LLSARGAAAVVDAFSKLENIGLQTLRLQYN-EIELDAVRTLKTVIDEKMPDLLFLELNG-N  312 (344)
T ss_dssp             HHGGGCTTCCEEECTTC--CCCHHHHHHHHHHHHTCSSCCCCEEECCSS-CCBHHHHHHHHHHHHHHCTTCCEEECTT-S
T ss_pred             ccccccccchhhhhhcC--ccCchhhHHHHHHhhhccCCCCCEEECCCC-cCChHHHHHHHHHHHccCCCCCEEECCC-C
Confidence            34678899999999998  443321110100000012358999999995 5643     223443 678999999998 6


Q ss_pred             CCcc
Q 045021          404 KLKY  407 (461)
Q Consensus       404 ~l~~  407 (461)
                      .+..
T Consensus       313 ~~~~  316 (344)
T d2ca6a1         313 RFSE  316 (344)
T ss_dssp             BSCT
T ss_pred             cCCC
Confidence            6543

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.13  E-value=0.00042  Score=55.13  Aligned_cols=13  Identities=31%  Similarity=0.488  Sum_probs=6.1

Q ss_pred             CCCCcCEEEEecC
Q 045021          334 KFSSLRHLTIEGC  346 (461)
Q Consensus       334 ~l~~L~~L~l~~~  346 (461)
                      .+++|+.|++++|
T Consensus        89 ~l~~L~~L~Ls~N  101 (162)
T d1koha1          89 KAPNLKILNLSGN  101 (162)
T ss_dssp             HSTTCCCCCCTTS
T ss_pred             hCCcccccccccC
Confidence            3444444444444

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.71  E-value=0.00082  Score=53.33  Aligned_cols=36  Identities=28%  Similarity=0.219  Sum_probs=16.2

Q ss_pred             CCCCCccEEEecc-cCCCcCCC--CCCCCcceEEeecCc
Q 045021          286 HNLKSLKKLRIGG-KLPSLEED--GLPTNLHFLKIERNM  321 (461)
Q Consensus       286 ~~l~~L~~L~l~~-~~~~l~~~--~~~~~L~~L~l~~~~  321 (461)
                      ..+++|+.|++++ .+..++..  ....+|+.+++.+|+
T Consensus        88 ~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Np  126 (162)
T d1koha1          88 QKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNS  126 (162)
T ss_dssp             HHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTST
T ss_pred             hhCCcccccccccCccccchhhhhhhccccceeecCCCC
Confidence            3445555555555 44333321  011245556666554

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=95.31  E-value=0.0034  Score=49.80  Aligned_cols=16  Identities=13%  Similarity=0.029  Sum_probs=9.6

Q ss_pred             cchhhccCCcEEEecC
Q 045021          386 SSIVDLQNLKYLKLYD  401 (461)
Q Consensus       386 ~~~~~~~~L~~L~l~~  401 (461)
                      ..+...++|+.|.+++
T Consensus       125 ~~L~~n~sL~~l~l~~  140 (167)
T d1pgva_         125 MAIEENESLLRVGISF  140 (167)
T ss_dssp             HHHHHCSSCCEEECCC
T ss_pred             HHHHhCCCccEeeCcC
Confidence            4445566677766655

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=95.18  E-value=0.0036  Score=49.71  Aligned_cols=113  Identities=16%  Similarity=0.123  Sum_probs=67.8

Q ss_pred             CCCCcceEEeecCchhhHHhh---hhcccCCCCcCEEEEecCCCcccccCccccccCCCCCCCCCcceeecCCCCCCcc-
Q 045021          308 LPTNLHFLKIERNMEIWKSMI---ERGFHKFSSLRHLTIEGCDDDMVSFPPEDRRLGTTLPLPASLASLTIGDFPNLER-  383 (461)
Q Consensus       308 ~~~~L~~L~l~~~~~l~~~~~---~~~~~~l~~L~~L~l~~~~~~~~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~-  383 (461)
                      ..++|++|+++++..+.+...   ...+...++|++|++++|  .+..-....++  ......+.|++|++++| .+.. 
T Consensus        13 n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n--~l~~~~~~~la--~~L~~n~~L~~L~L~~n-~i~~~   87 (167)
T d1pgva_          13 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANT--AISDSEARGLI--ELIETSPSLRVLNVESN-FLTPE   87 (167)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTS--CCBHHHHTTHH--HHHHHCSSCCEEECCSS-BCCHH
T ss_pred             CCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeecccc--ccchhHHHHHh--hhhhhcccccceeeehh-hcchH
Confidence            346788888887654443321   224566788999999987  44321110010  00013468999999996 4543 


Q ss_pred             ----cccchhhccCCcEEEecCCCCCcccCCCC-------C--cccccEeeccCCc
Q 045021          384 ----LSSSIVDLQNLKYLKLYDCPKLKYFSEKG-------L--PSSLLRLYIDECP  426 (461)
Q Consensus       384 ----i~~~~~~~~~L~~L~l~~C~~l~~~~~~~-------~--~~~L~~L~i~~c~  426 (461)
                          +...+...++|++|++.+ +.+..+...+       +  .++|+.|+++.+.
T Consensus        88 g~~~l~~aL~~n~sL~~L~l~~-n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~~  142 (167)
T d1pgva_          88 LLARLLRSTLVTQSIVEFKADN-QRQSVLGNQVEMDMMMAIEENESLLRVGISFAS  142 (167)
T ss_dssp             HHHHHHHHTTTTCCCSEEECCC-CSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred             HHHHHHHHHHhCCcCCEEECCC-CcCCCccHHHHHHHHHHHHhCCCccEeeCcCCC
Confidence                225567778899999987 4444433211       1  4688889887764

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=93.30  E-value=0.012  Score=46.42  Aligned_cols=112  Identities=14%  Similarity=0.083  Sum_probs=51.2

Q ss_pred             CCcceEEeecCchhhHHhh---hhcccCCCCcCEEEEecCCCcccccCccccccCCCCCCCCCcceeecCCCCCCc----
Q 045021          310 TNLHFLKIERNMEIWKSMI---ERGFHKFSSLRHLTIEGCDDDMVSFPPEDRRLGTTLPLPASLASLTIGDFPNLE----  382 (461)
Q Consensus       310 ~~L~~L~l~~~~~l~~~~~---~~~~~~l~~L~~L~l~~~~~~~~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~----  382 (461)
                      ++|++|+++++..+++...   ...+...++|++|++++|  ++..-....++  ......++++.+++++|.--.    
T Consensus        17 ~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n--~l~~~~~~~L~--~~l~~~~~l~~l~l~~~~~~~~g~~   92 (166)
T d1io0a_          17 PDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGT--RSNDPVAFALA--EMLKVNNTLKSLNVESNFISGSGIL   92 (166)
T ss_dssp             TTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTS--CCCHHHHHHHH--HHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred             CCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCC--cccHHHHHHHH--HHHhhcccchhhhhccccccchhHH
Confidence            4566666665443433221   123445666777777766  32211000000  000123467777777653221    


Q ss_pred             ccccchhhccCCcEEEecCCC-CCcccCCC----C--CcccccEeeccCC
Q 045021          383 RLSSSIVDLQNLKYLKLYDCP-KLKYFSEK----G--LPSSLLRLYIDEC  425 (461)
Q Consensus       383 ~i~~~~~~~~~L~~L~l~~C~-~l~~~~~~----~--~~~~L~~L~i~~c  425 (461)
                      .+...+...++|+.+++..|. .+..-...    .  ..++|+.|+++.+
T Consensus        93 ~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~  142 (166)
T d1io0a_          93 ALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT  142 (166)
T ss_dssp             HHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred             HHHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCC
Confidence            122455566677766665432 33331110    0  1356677766655

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=92.64  E-value=0.0096  Score=46.97  Aligned_cols=59  Identities=22%  Similarity=0.219  Sum_probs=27.8

Q ss_pred             CCccEEEEecCCchh-----hhHHhhcCCCccceeeccccccc----eecccccCCCCCccEEEecCC
Q 045021          193 PSLKSLNVWSCSKLE-----SIAERLDNNTSLEMISILWCENL----KFLPSGLHNLRQLQEIQLWGC  251 (461)
Q Consensus       193 ~~L~~L~l~~~~~l~-----~~~~~~~~l~~L~~L~l~~~~~~----~~~~~~~~~l~~L~~L~l~~~  251 (461)
                      ++|++|++++...++     .+...+...++|++|++++|..-    ..+...+...++++.+++++|
T Consensus        17 ~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~   84 (166)
T d1io0a_          17 PDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESN   84 (166)
T ss_dssp             TTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSS
T ss_pred             CCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccc
Confidence            345555555432221     12334455666666666665211    112233334456666666554