Citrus Sinensis ID: 045023

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810--
MNPFSSGTRLRDMIRSIRACKTAAEERAVVRKECAAIRAAINENDQDYRHRNLAKLMFIHMLGYPTHFGQMECLKSIASAGFPEKRIGYLGLMLLLDERQEVLMLVTNSLKQDLNHTNQYIVGLALCALGNICSAEMARDLAPEVERLLQFRDPNIRKKPKCLDGLVKTLRDVVNSPYAPEYDIAGITDPFLHIRLLKLLHVLGQGDADASDCMNDILAQVATKTESNKNAGNAILYECVETIMSIEDNGGLRVLAINILGRFLSNRDNNIRYVALNMLMKAITVDAQAVQRHRATILECVKDLDASIRKRALELVYLLVNESNVKPLTKELIDYLEISDQEFKGDLTAKICSMVEKFSPDKIWYIDQMLKVLSEAGNFVKDEVWHALIVVISNASDLHGYTVRALYRAVQTSIEQESLVRVAIWCIGEYGDMLVNNVGVLNIEDPITVTESDAVDVVEIAIKHHSSDITTKAMAMVALLKLSSRFPSCSERIRDIIVQNKGSLVLELQQRSIEFNSIVEKHQNIRSTLVERMPVLDEATFSGRRAGSLPATVSTSSGTSLNLPNGVAKPAAAPLVDLLDLSSDDAPVPSSSGNDFLQDLLGVDVSPASVQPGTSQAPKAGTDVLLDLLSIGSPPVQNNSTPSDILSSSQDNKSSVAILDGLSPAPSGGAASMIDLLDGFVPNSPKPEDNGPAYPSIVAFESSSLRLTFNFSKPPGNPQTTLIQATFTNLSPNVYTDFVFQAAVPKFLQLHLDPASGNTLPASGNGSITQTLRVTNSQHGKKPLVMRTRIAYKLNNRDVLEEGQINNFPRDL
cccccccccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcccccccccHHHHccccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHEEEEEcccccccccccccccccccccccccHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEccccccccEEEEEEEEEccccccccEEEEEcccccEEEEEcccccccccccccccEEEEEEEEEccccccccEEEEEEEEEEccEEEEEccccccccccc
cccccccHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHcccccEHHHHHHHHHHHHcccccHHHHHHHHHHHHccHHHHHHHHHHHHHHHHccccccHHHHHHEHHHHHHHHHHcccccccccccccEccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcHHHHHHHHHHcccccHcccHccccccccHHHccccccccccccccccccccccccccccccccccccccccccHHHHHcccccccccccccccccccccHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEccEEEEEEEEEccccccEEEEEEEEEEcccccEEEEEEEEEcccccEEEEcccccccEcHHHcccEEEEEEEEccccccccEEEEEEEEEEEcccccEEEEEcccccccc
mnpfssgtrLRDMIRSIRACKTAAEERAVVRKECAAIRAAINENDQDYRHRNLAKLMFIHMlgypthfgqmECLKSiasagfpekrIGYLGLMLLLDERQEVLMLVTNSLKQDLNHTNQYIVGLALCALGNICSAEMARDLAPEVERLLqfrdpnirkkpkclDGLVKTLRDvvnspyapeydiagitdPFLHIRLLKLLHVLgqgdadasDCMNDILAQVATKtesnknagnAILYECVETIMSIEDNGGLRVLAINILGRFLSNRDNNIRYVALNMLMKAITVDAQAVQRHRATILECVKDLDASIRKRALELVYLLVNESNVKPLTKELIDYLEISDQEFKGDLTAKICSMVekfspdkiWYIDQMLKVLSEAGNFVKDEVWHALIVVISnasdlhgyTVRALYRAVQTSIEQESLVRVAIWCIGEYGDMLVNNVgvlniedpitvtesdaVDVVEIAIKHHSSDITTKAMAMVALLKLssrfpscseRIRDIIVQNKGSLVLELQQRSIEFNSIVEKHQNIRSTLvermpvldeatfsgrragslpatvstssgtslnlpngvakpaaaplvdlldlssddapvpsssgndflqdllgvdvspasvqpgtsqapkagTDVLLDLLsigsppvqnnstpsdilsssqdnkssvaildglspapsggaaSMIDLldgfvpnspkpedngpaypsIVAFEssslrltfnfskppgnpqttLIQATFtnlspnvytdfvfQAAVPKFLQlhldpasgntlpasgngsitqTLRVtnsqhgkkplVMRTRIAYklnnrdvleegqinnfprdl
mnpfssgtrlrdmIRSIRACKTAAEERAVVRKECAAIRAainendqdyRHRNLAKLMFIHMLGYPTHFGQMECLKSIASAGFPEKRIGYLGLMLLLDERQEVLMLVTNSLKQDLNHTNQYIVGLALCALGNICSAEMARDLAPEVERLlqfrdpnirkkpkcldgLVKTLRDVVNSPYAPEYDIAGITDPFLHIRLLKLLHVLGQGDADASDCMNDILAQVAtktesnknagNAILYECVETIMSIEDNGGLRVLAINILGRFLSNRDNNIRYVALNMLMKAITVDAQAVQRHRATILECVKDLDASIRKRALELVYLlvnesnvkplTKELIDYLEISDQEFKGDLTAKICSMVEKFSPDKIWYIDQMLKVLSEAGNFVKDEVWHALIVVIsnasdlhgYTVRALYRAVQTSIEQESLVRVAIWCIGEYGDMLVNNVGVLNIEDPITVTESDAVDVVEIAIKhhssdittKAMAMVALLKLSSRFPSCSERIRDIIVQNKGSLVLELQQRSIEFNSIVEKHQNIRSTLVERMPVLDEAtfsgrragslpatvstssgtslnlpngVAKPAAAPLVDLLDLSSDDAPVPSSSGNDFLQDLLGVDVSPASVQPGTSQAPKAGTDVLLDLLSIGSPPVQNNSTPSDILSSSQDNKSSVAILDGLSPAPSGGAASMIDLLDGFVPNSPKPEDNGPAYPSIVAFESSSLRLTFNFSKPPGNPQTTLIQATFTNLSPNVYTDFVFQAAVPKFLQLHLDPASGNTLPASGNGSITQTLrvtnsqhgkkplvMRTRIAyklnnrdvleegqinnfprdl
MNPFSSGTRLRDMIRSIRACKTAAEERAVVRKECAAIRAAINENDQDYRHRNLAKLMFIHMLGYPTHFGQMECLKSIASAGFPEKRIGYLGLMLLLDERQEVLMLVTNSLKQDLNHTNQYIVGLALCALGNICSAEMARDLAPEVERLLQFRDPNIRKKPKCLDGLVKTLRDVVNSPYAPEYDIAGITDPFlhirllkllhvlGQGDADASDCMNDILAQVATKTESNKNAGNAILYECVETIMSIEDNGGLRVLAINILGRFLSNRDNNIRYVALNMLMKAITVDAQAVQRHRATILECVKDLDASIRKRALELVYLLVNESNVKPLTKELIDYLEISDQEFKGDLTAKICSMVEKFSPDKIWYIDQMLKVLSEAGNFVKDEVWHALIVVISNASDLHGYTVRALYRAVQTSIEQESLVRVAIWCIGEYGDMLVNNVGVLNIEDPITVTESDAVDVVEIAIKHHSSDITTKAMAMVALLKLSSRFPSCSERIRDIIVQNKGSLVLELQQRSIEFNSIVEKHQNIRSTLVERMPVLDEATFSGRRAGSLPATVSTSSGTSLNLPNGVAKpaaaplvdlldlssddapvpssSGNDFLQDLLGVDVSPASVQPGTSQAPKAGTDVLLDLLSIGSPPVQNNSTPSDILSSSQDNKSSVAILDGLSPAPSGGAASMIDLLDGFVPNSPKPEDNGPAYPSIVAFESSSLRLTFNFSKPPGNPQTTLIQATFTNLSPNVYTDFVFQAAVPKFLQLHLDPASGNTLPASGNGSITQTLRVTNSQHGKKPLVMRTRIAYKLNNRDVLEEGQINNFPRDL
*************IRSIRACKTAAEERAVVRKECAAIRAAINENDQDYRHRNLAKLMFIHMLGYPTHFGQMECLKSIASAGFPEKRIGYLGLMLLLDERQEVLMLVTNSLKQDLNHTNQYIVGLALCALGNICSAEMARDLAPEVERLLQFRDPNIRKKPKCLDGLVKTLRDVVNSPYAPEYDIAGITDPFLHIRLLKLLHVLGQGDADASDCMNDILAQVATKTESNKNAGNAILYECVETIMSIEDNGGLRVLAINILGRFLSNRDNNIRYVALNMLMKAITVDAQAVQRHRATILECVKDLDASIRKRALELVYLLVNESNVKPLTKELIDYLEISDQEFKGDLTAKICSMVEKFSPDKIWYIDQMLKVLSEAGNFVKDEVWHALIVVISNASDLHGYTVRALYRAVQTSIEQESLVRVAIWCIGEYGDMLVNNVGVLNIEDPITVTESDAVDVVEIAIKHHSSDITTKAMAMVALLKLSSRFPSCSERIRDIIVQNKGSLVLELQQRSIEFNSIVEKHQNIRSTLVERMPVL****************************************************************************************LLDL********************************************************************IVAF****LRLTFNF********TTLIQATFTNLSPNVYTDFVFQAAVPKFLQLHLD******************************LVMRTRIAYKLNNR***************
**********RDMIRSIRACKTAAEERAVVRKECAAIRA********YRHRNLAKLMFIHMLGYPTHFGQMECLKSIASAGFPEKRIGYLGLMLLLDERQEVLMLVTNSLKQDLNHTNQYIVGLALCALGNICSAEMARDLAPEVERLLQFRDPNIRKKPKCLDGLVKTLRDVVNSPYAPEYDIAGITDPFLHIRLLKLLHVLGQGDADASDCMNDILAQVATKTESNKNAGNAILYECVETIMSIEDNGGLRVLAINILGRFLSNRDNNIRYVALNMLMKAITVDAQAVQRHRATILECVKDLDASIRKRALELVYLLVNESNVKPLTKELIDYLEISDQEFKGDLTAKICSMVEKFSPDKIWYIDQMLKVLSEAGNFVKDEVWHALIVVISNASDLHGYTVRALYRAVQTSIEQESLVRVAIWCIGEYGDMLVNNVGVLNIEDPITVTESDAVDVVEIAIKHHSSDITTKAMAMVALLKLSSRFPSCSERIRDIIVQNKGSLVLELQQRSIEFNSIVEKHQNIRSTLVERMPVLD************************************************************************************************************************************************************YPSIVAFESSSLRLTFNFSKPPGNPQTTLIQATFTNLSPNVYTDFVFQAAVPKF*********************TQTLRVTNSQHGKKPLVMRTRIAYKLNNRDVLEEGQINNFPRD*
*********LRDMIRSIRACKTAAEERAVVRKECAAIRAAINENDQDYRHRNLAKLMFIHMLGYPTHFGQMECLKSIASAGFPEKRIGYLGLMLLLDERQEVLMLVTNSLKQDLNHTNQYIVGLALCALGNICSAEMARDLAPEVERLLQFRDPNIRKKPKCLDGLVKTLRDVVNSPYAPEYDIAGITDPFLHIRLLKLLHVLGQGDADASDCMNDILAQVATKTESNKNAGNAILYECVETIMSIEDNGGLRVLAINILGRFLSNRDNNIRYVALNMLMKAITVDAQAVQRHRATILECVKDLDASIRKRALELVYLLVNESNVKPLTKELIDYLEISDQEFKGDLTAKICSMVEKFSPDKIWYIDQMLKVLSEAGNFVKDEVWHALIVVISNASDLHGYTVRALYRAVQTSIEQESLVRVAIWCIGEYGDMLVNNVGVLNIEDPITVTESDAVDVVEIAIKHHSSDITTKAMAMVALLKLSSRFPSCSERIRDIIVQNKGSLVLELQQRSIEFNSIVEKHQNIRSTLVERMPVLDEATFSGRRAGSLPATVSTSSGTSLNLPNGVAKPAAAPLVDLLDLSSDDAPVPSSSGNDFLQDLLGVDVSPA*********PKAGTDVLLDLLSIGSPPVQN***************SSVAILDGLSPAPSGGAASMIDLLDGFVPNSPKPEDNGPAYPSIVAFESSSLRLTFNFSKPPGNPQTTLIQATFTNLSPNVYTDFVFQAAVPKFLQLHLDPASGNTLPASGNGSITQTLRVTNSQHGKKPLVMRTRIAYKLNNRDVLEEGQINNFPRDL
*******TRLRDMIRSIRACKTAAEERAVVRKECAAIRAAINENDQDYRHRNLAKLMFIHMLGYPTHFGQMECLKSIASAGFPEKRIGYLGLMLLLDERQEVLMLVTNSLKQDLNHTNQYIVGLALCALGNICSAEMARDLAPEVERLLQFRDPNIRKKPKCLDGLVKTLRDVVNSPYAPEYDIAGITDPFLHIRLLKLLHVLGQGDADASDCMNDILAQVATKTESNKNAGNAILYECVETIMSIEDNGGLRVLAINILGRFLSNRDNNIRYVALNMLMKAITVDAQAVQRHRATILECVKDLDASIRKRALELVYLLVNESNVKPLTKELIDYLEISDQEFKGDLTAKICSMVEKFSPDKIWYIDQMLKVLSEAGNFVKDEVWHALIVVISNASDLHGYTVRALYRAVQTSIEQESLVRVAIWCIGEYGDMLVNNVGVLNIEDPITVTESDAVDVVEIAIKHHSSDITTKAMAMVALLKLSSRFPSCSERIRDIIVQNKGSLVLELQQRSIEFNSIVEKHQNIRSTLVERMPVLD**********************************************************FL******DV*****************DVLLDLLS*GS*******************************************LDGFVP********GPAYPSIVAFESSSLRLTFNFSKPPGNPQTTLIQATFTNLSPNVYTDFVFQAAVPKFLQLHLDPASGNTLPASGNGSITQTLRVTNSQHGKKPLVMRTRIAYKLNNRDVLEEGQINNFPR**
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MNPFSSGTRLRDMIRSIRACKTAAEERAVVRKECAAIRAAINENDQDYRHRNLAKLMFIHMLGYPTHFGQMECLKSIASAGFPEKRIGYLGLMLLLDERQEVLMLVTNSLKQDLNHTNQYIVGLALCALGNICSAEMARDLAPEVERLLQFRDPNIRKKPKCLDGLVKTLRDVVNSPYAPEYDIAGITDPFLHIRLLKLLHVLGQGDADASDCMNDILAQVATKTESNKNAGNAILYECVETIMSIEDNGGLRVLAINILGRFLSNRDNNIRYVALNMLMKAITVDAQAVQRHRATILECVKDLDASIRKRALELVYLLVNESNVKPLTKELIDYLEISDQEFKGDLTAKICSMVEKFSPDKIWYIDQMLKVLSEAGNFVKDEVWHALIVVISNASDLHGYTVRALYRAVQTSIEQESLVRVAIWCIGEYGDMLVNNVGVLNIEDPITVTESDAVDVVEIAIKHHSSDITTKAMAMVALLKLSSRFPSCSERIRDIIVQNKGSLVLELQQRSIEFNSIVEKHQNIRSTLVERMPVLDEATFSGRRAGSLPATVSTSSGTSLNLPNGVAKPAAAPLVDLLDLSSDDAPVPSSSGNDFLQDLLGVDVSPASVQPGTSQAPKAGTDVLLDLLSIGSPPVQNNSTPSDILSSSQDNKSSVAILDGLSPAPSGGAASMIDLLDGFVPNSPKPEDNGPAYPSIVAFESSSLRLTFNFSKPPGNPQTTLIQATFTNLSPNVYTDFVFQAAVPKFLQLHLDPASGNTLPASGNGSITQTLRVTNSQHGKKPLVMRTRIAYKLNNRDVLEEGQINNFPRDL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query812 2.2.26 [Sep-21-2011]
Q9ZUI6862 AP-1 complex subunit gamm yes no 0.990 0.932 0.755 0.0
Q84K16876 AP-1 complex subunit gamm no no 1.0 0.926 0.728 0.0
P22892822 AP-1 complex subunit gamm yes no 0.931 0.919 0.416 0.0
O43747822 AP-1 complex subunit gamm yes no 0.929 0.918 0.418 0.0
Q5R5M2822 AP-1 complex subunit gamm yes no 0.929 0.918 0.417 0.0
Q8I8U2895 AP-1 complex subunit gamm yes no 0.652 0.592 0.471 1e-160
Q99128853 AP-1 complex subunit gamm N/A no 0.759 0.723 0.419 1e-148
O88512791 AP-1 complex subunit gamm no no 0.649 0.666 0.444 1e-142
O75843785 AP-1 complex subunit gamm no no 0.649 0.671 0.437 1e-139
Q9UU81865 AP-1 complex subunit gamm yes no 0.922 0.865 0.348 1e-125
>sp|Q9ZUI6|AP1G2_ARATH AP-1 complex subunit gamma-2 OS=Arabidopsis thaliana GN=At1g60070 PE=2 SV=2 Back     alignment and function desciption
 Score = 1327 bits (3434), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 657/870 (75%), Positives = 731/870 (84%), Gaps = 66/870 (7%)

Query: 1   MNPFSSGTRLRDMIRSIRACKTAAEERAVVRKECAAIRAAINENDQDYRHRNLAKLMFIH 60
           MNPFSSGTRL DMIR+IRA KTAAEERAVVRKECAAIRA+INENDQDYRHR+LAKLMFIH
Sbjct: 1   MNPFSSGTRLSDMIRAIRASKTAAEERAVVRKECAAIRASINENDQDYRHRDLAKLMFIH 60

Query: 61  MLGYPTHFGQMECLKSIASAGFPEKRIGYLGLMLLLDERQEVLMLVTNSLKQDLNHTNQY 120
           MLGYPTHFGQMECLK IAS GFPEKRIGYLGLMLLLDERQEVLMLVTNSLKQDLNHTNQY
Sbjct: 61  MLGYPTHFGQMECLKLIASPGFPEKRIGYLGLMLLLDERQEVLMLVTNSLKQDLNHTNQY 120

Query: 121 IVGLALCALGNICSAEMARDLAPEVERLLQFRDPNI------------RKKP-------- 160
           IVGLALCALGNICSAEMARDLAPEVERLLQFRDPNI            RK P        
Sbjct: 121 IVGLALCALGNICSAEMARDLAPEVERLLQFRDPNIRKKAALCAIRIIRKVPDLSENFIN 180

Query: 161 -------------------------------------KCLDGLVKTLRDVVNSPYAPEYD 183
                                                KC +GLVKTLRD+ NSPY+PEYD
Sbjct: 181 PGAALLKEKHHGVLITGVHLCTEICKVSSEALEYFRKKCTEGLVKTLRDIANSPYSPEYD 240

Query: 184 IAGITDPFLHIRLLKLLHVLGQGDADASDCMNDILAQVATKTESNKNAGNAILYECVETI 243
           +AGITDPFLHIRLLKLL VLGQGDADASDCMNDILAQVA+KTESNKNAGNAILYECV+TI
Sbjct: 241 VAGITDPFLHIRLLKLLRVLGQGDADASDCMNDILAQVASKTESNKNAGNAILYECVQTI 300

Query: 244 MSIEDNGGLRVLAINILGRFLSNRDNNIRYVALNMLMKAITVDAQAVQRHRATILECVKD 303
           MSIE+NGGLRVLAINILG+FLSNRDNNIRYVALNMLM+++TVD+QAVQRHRATILECVKD
Sbjct: 301 MSIEENGGLRVLAINILGKFLSNRDNNIRYVALNMLMRSLTVDSQAVQRHRATILECVKD 360

Query: 304 LDASIRKRALELVYLLVNESNVKPLTKELIDYLEISDQEFKGDLTAKICSMVEKFSPDKI 363
            DASI+KRALEL+YLLVNE+NVKPL KELI+YLE+S+Q+FKGDLTAKICS+VEKF+P+KI
Sbjct: 361 SDASIQKRALELIYLLVNENNVKPLAKELIEYLEVSEQDFKGDLTAKICSIVEKFAPEKI 420

Query: 364 WYIDQMLKVLSEAGNFVKDEVWHALIVVISNASDLHGYTVRALYRAVQTSIEQESLVRVA 423
           WYIDQMLKVLSEAG +VK++VWHALIVVI+NA DLHGYTVRALYRA+ TS EQE+LVRVA
Sbjct: 421 WYIDQMLKVLSEAGTYVKEDVWHALIVVITNAPDLHGYTVRALYRALHTSFEQETLVRVA 480

Query: 424 IWCIGEYGDMLVNNVGVLNIEDPITVTESDAVDVVEIAIKHHSSDITTKAMAMVALLKLS 483
           IWCIGEY D+LVNN G+L++EDPITVTESDAVDVVE AIKHH SD+TTKAMA++ALLK+S
Sbjct: 481 IWCIGEYADLLVNNAGMLDLEDPITVTESDAVDVVENAIKHHLSDVTTKAMALIALLKIS 540

Query: 484 SRFPSCSERIRDIIVQNKGSLVLELQQRSIEFNSIVEKHQNIRSTLVERMPVLDEATFSG 543
           SRFPSCSER++ II QNKGS VLELQQRS+EF+S+++KHQNIRS+LVERMPVLDEATFSG
Sbjct: 541 SRFPSCSERVKSIIGQNKGSFVLELQQRSLEFSSVIQKHQNIRSSLVERMPVLDEATFSG 600

Query: 544 RRAGSLPATVSTSSGTSLNLPNGVAKPAAAPLVDLLDLSSDDAPVPSSSGNDFLQDLLGV 603
           RRAGSLPA+VSTS  + L +PNGVAK AAAPLVDLLDL SDD P P+SS N+FLQDLLGV
Sbjct: 601 RRAGSLPASVSTSGKSPLGIPNGVAK-AAAPLVDLLDLGSDDTPAPTSSSNNFLQDLLGV 659

Query: 604 DVSPASVQPGTSQAPKAGTDVLLDLLSIGSP-PVQNNSTPSDILSSSQDNKSSVAILDGL 662
           D+S  S QPG  Q  +AG D+L+DLLSIG+P PVQN S   D+L S QDN + +A     
Sbjct: 660 DLSQPSAQPGAMQPSQAGADILMDLLSIGTPAPVQNGSANGDLL-SIQDNNAPIAPSLTS 718

Query: 663 SPAPSGGAASMIDLLDGFVPNSPKPEDNGPAYPSIVAFESSSLRLTFNFSKPPGNPQTTL 722
             APS    SM+DLLDGF P  PK ED   AYPSIVAFESSSL++ FNF+K   NPQTT 
Sbjct: 719 PTAPS----SMMDLLDGFGPTPPKSEDKSAAYPSIVAFESSSLKIEFNFTKQSENPQTTD 774

Query: 723 IQATFTNLSPNVYTDFVFQAAVPKFLQLHLDPASGNTLPASGNGSITQTLRVTNSQHGKK 782
           I A F NL+PNVYT+F+FQAAVPKFLQLHLDPAS N+LPA  NG+I QT+RVTNSQ GKK
Sbjct: 775 IVANFINLTPNVYTEFLFQAAVPKFLQLHLDPASSNSLPA--NGNIKQTMRVTNSQKGKK 832

Query: 783 PLVMRTRIAYKLNNRDVLEEGQINNFPRDL 812
           P+VMR R+ YK+N +DVLEEGQINNFPR L
Sbjct: 833 PIVMRMRVGYKINGKDVLEEGQINNFPRGL 862
Subunit of clathrin-associated adaptor protein complex 1 that plays a role in protein sorting in the late-Golgi/trans-Golgi network (TGN) and/or endosomes. The AP complexes mediate both the recruitment of clathrin to membranes and the recognition of sorting signals within the cytosolic tails of transmembrane cargo molecules.
Arabidopsis thaliana (taxid: 3702)
>sp|Q84K16|AP1G1_ARATH AP-1 complex subunit gamma-1 OS=Arabidopsis thaliana GN=GAMMA-ADR PE=1 SV=1 Back     alignment and function description
>sp|P22892|AP1G1_MOUSE AP-1 complex subunit gamma-1 OS=Mus musculus GN=Ap1g1 PE=1 SV=3 Back     alignment and function description
>sp|O43747|AP1G1_HUMAN AP-1 complex subunit gamma-1 OS=Homo sapiens GN=AP1G1 PE=1 SV=5 Back     alignment and function description
>sp|Q5R5M2|AP1G1_PONAB AP-1 complex subunit gamma-1 OS=Pongo abelii GN=AP1G1 PE=2 SV=1 Back     alignment and function description
>sp|Q8I8U2|AP1G_DICDI AP-1 complex subunit gamma OS=Dictyostelium discoideum GN=ap1g1 PE=1 SV=1 Back     alignment and function description
>sp|Q99128|AP1G1_USTMA AP-1 complex subunit gamma-1 OS=Ustilago maydis (strain 521 / FGSC 9021) GN=APL4 PE=3 SV=2 Back     alignment and function description
>sp|O88512|AP1G2_MOUSE AP-1 complex subunit gamma-like 2 OS=Mus musculus GN=Ap1g2 PE=2 SV=2 Back     alignment and function description
>sp|O75843|AP1G2_HUMAN AP-1 complex subunit gamma-like 2 OS=Homo sapiens GN=AP1G2 PE=1 SV=1 Back     alignment and function description
>sp|Q9UU81|AP1G1_SCHPO AP-1 complex subunit gamma-1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=apl4 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query812
255560015875 AP-1 complex subunit gamma-2, putative [ 0.998 0.926 0.809 0.0
225424713878 PREDICTED: AP-1 complex subunit gamma-2 1.0 0.924 0.801 0.0
224090823877 predicted protein [Populus trichocarpa] 1.0 0.925 0.792 0.0
357485969872 AP-1 complex subunit gamma-1 [Medicago t 0.997 0.928 0.776 0.0
224140325875 predicted protein [Populus trichocarpa] 0.995 0.923 0.781 0.0
449434899875 PREDICTED: AP-1 complex subunit gamma-2- 0.996 0.924 0.758 0.0
449478550875 PREDICTED: LOW QUALITY PROTEIN: AP-1 com 0.996 0.924 0.758 0.0
297837511862 clathrin binding protein [Arabidopsis ly 0.990 0.932 0.757 0.0
356497868872 PREDICTED: AP-1 complex subunit gamma-2- 0.996 0.927 0.771 0.0
356501606873 PREDICTED: AP-1 complex subunit gamma-2- 0.996 0.926 0.768 0.0
>gi|255560015|ref|XP_002521026.1| AP-1 complex subunit gamma-2, putative [Ricinus communis] gi|223539863|gb|EEF41443.1| AP-1 complex subunit gamma-2, putative [Ricinus communis] Back     alignment and taxonomy information
 Score = 1398 bits (3619), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 709/876 (80%), Positives = 762/876 (86%), Gaps = 65/876 (7%)

Query: 1   MNPFSSGTRLRDMIRSIRACKTAAEERAVVRKECAAIRAAINENDQDYRHRNLAKLMFIH 60
           MNPFSSGTRLRDMIR+IRACKTAAEERAVVRKECAAIRAAINENDQDYRHRNLAKLMFIH
Sbjct: 1   MNPFSSGTRLRDMIRAIRACKTAAEERAVVRKECAAIRAAINENDQDYRHRNLAKLMFIH 60

Query: 61  MLGYPTHFGQMECLKSIASAGFPEKRIGYLGLMLLLDERQEVLMLVTNSLKQDLNHTNQY 120
           MLGYPTHFGQMECLK IASAGFPEKRIGYLGLMLLLDERQEVLMLVTNSLKQDLNH+NQY
Sbjct: 61  MLGYPTHFGQMECLKLIASAGFPEKRIGYLGLMLLLDERQEVLMLVTNSLKQDLNHSNQY 120

Query: 121 IVGLALCALGNICSAEMARDLAPEVERLLQFRDPN------------IRKKP-------- 160
           IVGLALCALGNICSAEMARDLAPEVERLLQFRDPN            I+K P        
Sbjct: 121 IVGLALCALGNICSAEMARDLAPEVERLLQFRDPNIRKKAALCSIRIIKKVPDLAENFIN 180

Query: 161 -------------------------------------KCLDGLVKTLRDVVNSPYAPEYD 183
                                                KC DGLV+TLRDVVNSPYAPEYD
Sbjct: 181 PAAALLKEKHHGVLITGIQLCTDLCKVSPEALEYFRKKCTDGLVRTLRDVVNSPYAPEYD 240

Query: 184 IAGITDPFLHIRLLKLLHVLGQGDADASDCMNDILAQVATKTESNKNAGNAILYECVETI 243
           IAGITDPFLHIRLL+LL +LGQGDADASD MNDILAQVATKTESNKNAGNAILYECVETI
Sbjct: 241 IAGITDPFLHIRLLRLLRMLGQGDADASDAMNDILAQVATKTESNKNAGNAILYECVETI 300

Query: 244 MSIEDNGGLRVLAINILGRFLSNRDNNIRYVALNMLMKAITVDAQAVQRHRATILECVKD 303
           MSIEDNGGLRVLAINILGRFLSNRDNNIRYVALNMLMKAITVDAQAVQRHRATILECVKD
Sbjct: 301 MSIEDNGGLRVLAINILGRFLSNRDNNIRYVALNMLMKAITVDAQAVQRHRATILECVKD 360

Query: 304 LDASIRKRALELVYLLVNESNVKPLTKELIDYLEISDQEFKGDLTAKICSMVEKFSPDKI 363
            DASIRKRALELVYLLVNESNVKPLTKELI+YLE+SDQEFKGDLTAKICS+VEKFSP+KI
Sbjct: 361 SDASIRKRALELVYLLVNESNVKPLTKELIEYLEVSDQEFKGDLTAKICSIVEKFSPEKI 420

Query: 364 WYIDQMLKVLSEAGNFVKDEVWHALIVVISNASDLHGYTVRALYRAVQTSIEQESLVRVA 423
           WYIDQMLKVL+EAGNFVKDEVWHALIVVISNASDLHGY VRALY+A Q S EQE LVRVA
Sbjct: 421 WYIDQMLKVLTEAGNFVKDEVWHALIVVISNASDLHGYVVRALYKAFQASAEQEILVRVA 480

Query: 424 IWCIGEYGDMLVNNVGVLNIEDPITVTESDAVDVVEIAIKHHSSDITTKAMAMVALLKLS 483
           +WCIGEYGD+LVNNVGVL+IED ITVTESDAVDVVEIAI  H+SD+TTKAMA++ALLKLS
Sbjct: 481 VWCIGEYGDLLVNNVGVLDIEDTITVTESDAVDVVEIAINRHASDLTTKAMALIALLKLS 540

Query: 484 SRFPSCSERIRDIIVQNKGSLVLELQQRSIEFNSIVEKHQNIRSTLVERMPVLDEATFSG 543
           SRFPSCS+R++DIIVQNKGSLVLELQQRS+EFNSI+EKHQ+IRS LVERMPVLDEATFSG
Sbjct: 541 SRFPSCSQRVKDIIVQNKGSLVLELQQRSLEFNSIIEKHQSIRSALVERMPVLDEATFSG 600

Query: 544 RRAGSLPATVSTSSGTSLNLPNGVAKPAAAPLVDLLDLSSDDAPVPSSSGNDFLQDLLGV 603
           RRAGSLP TVSTSSG SLN+PNGVAKP+AAPLV  L   SDDAP PSSSG DFL DLLGV
Sbjct: 601 RRAGSLPTTVSTSSGASLNIPNGVAKPSAAPLV-DLLDLSDDAPAPSSSGGDFLHDLLGV 659

Query: 604 DVSPASVQPGTSQAPKAGTDVLLDLLSIGSPPVQNNSTPSDILSSSQDNKSSVAILDGL- 662
           D++P S QPG++QAPKAGT++LLDLLSIG+PPVQ++S+ SD+L S QDN++ +  LD L 
Sbjct: 660 DLAPGSTQPGSNQAPKAGTNILLDLLSIGTPPVQSSSSTSDLLLSGQDNQTPITTLDALS 719

Query: 663 SPAPSG------GAASMIDLLDGFVPNSPKPEDNGPAYPSIVAFESSSLRLTFNFSKPPG 716
           SP PS       GA+ M+DLLDGF P+  K E+NG  YPSIVAFESS+LR+TFNFSK PG
Sbjct: 720 SPFPSAQVKSSVGASPMMDLLDGFGPSPSKHEENGTVYPSIVAFESSNLRMTFNFSKSPG 779

Query: 717 NPQTTLIQATFTNLSPNVYTDFVFQAAVPKFLQLHLDPASGNTLPASGNGSITQTLRVTN 776
           NPQTT+IQATF NLSPN +TDFVFQAAVPKFLQLHLDPAS NTLPASGNGS+TQ LRVTN
Sbjct: 780 NPQTTIIQATFANLSPNAFTDFVFQAAVPKFLQLHLDPASSNTLPASGNGSLTQNLRVTN 839

Query: 777 SQHGKKPLVMRTRIAYKLNNRDVLEEGQINNFPRDL 812
           SQHGKKPLVMR RIAYK+N +D+LEEGQINNFPRDL
Sbjct: 840 SQHGKKPLVMRIRIAYKMNGKDMLEEGQINNFPRDL 875

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225424713|ref|XP_002265190.1| PREDICTED: AP-1 complex subunit gamma-2 [Vitis vinifera] gi|296086533|emb|CBI32122.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224090823|ref|XP_002309097.1| predicted protein [Populus trichocarpa] gi|222855073|gb|EEE92620.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|357485969|ref|XP_003613272.1| AP-1 complex subunit gamma-1 [Medicago truncatula] gi|355514607|gb|AES96230.1| AP-1 complex subunit gamma-1 [Medicago truncatula] Back     alignment and taxonomy information
>gi|224140325|ref|XP_002323533.1| predicted protein [Populus trichocarpa] gi|222868163|gb|EEF05294.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449434899|ref|XP_004135233.1| PREDICTED: AP-1 complex subunit gamma-2-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449478550|ref|XP_004155349.1| PREDICTED: LOW QUALITY PROTEIN: AP-1 complex subunit gamma-2-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|297837511|ref|XP_002886637.1| clathrin binding protein [Arabidopsis lyrata subsp. lyrata] gi|297332478|gb|EFH62896.1| clathrin binding protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|356497868|ref|XP_003517778.1| PREDICTED: AP-1 complex subunit gamma-2-like isoform 1 [Glycine max] Back     alignment and taxonomy information
>gi|356501606|ref|XP_003519615.1| PREDICTED: AP-1 complex subunit gamma-2-like isoform 1 [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query812
TAIR|locus:2199897876 GAMMA-ADAPTIN 1 "gamma-adaptin 0.805 0.746 0.706 1.50000009901e-317
ZFIN|ZDB-GENE-030131-3187821 ap1g1 "adaptor-related protein 0.467 0.462 0.469 4.1e-167
DICTYBASE|DDB_G0281957895 ap1g1 "gamma adaptin" [Dictyos 0.463 0.420 0.481 8.5e-165
MGI|MGI:1328307791 Ap1g2 "adaptor protein complex 0.471 0.484 0.435 6.2e-152
UNIPROTKB|E2R7K5787 AP1G2 "Uncharacterized protein 0.472 0.487 0.434 1.3e-151
RGD|2324507785 Ap1g2 "adaptor-related protein 0.475 0.491 0.421 2.1e-151
UNIPROTKB|O75843785 AP1G2 "AP-1 complex subunit ga 0.472 0.489 0.421 4.3e-151
ZFIN|ZDB-GENE-030616-587831 ap1g2 "adaptor-related protein 0.481 0.470 0.443 1e-149
WB|WBGene00000158829 apg-1 [Caenorhabditis elegans 0.566 0.554 0.405 5.5e-147
UNIPROTKB|E2RPG3822 AP1G1 "Uncharacterized protein 0.660 0.652 0.385 3.3e-145
TAIR|locus:2199897 GAMMA-ADAPTIN 1 "gamma-adaptin 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2310 (818.2 bits), Expect = 1.5e-317, Sum P(2) = 1.5e-317
 Identities = 467/661 (70%), Positives = 534/661 (80%)

Query:   159 KPKCLDGLVKTLRDVVNSPYAPEYDIAGITDPFXXXXXXXXXXXXGQGDADASDCMNDIL 218
             + KC +GL+KTLRD+ NS Y PEYD+AGITDPF            GQGDADASD M DIL
Sbjct:   216 RTKCTEGLIKTLRDITNSAYQPEYDVAGITDPFLHIRLLRLLRVLGQGDADASDLMTDIL 275

Query:   219 AQVATKTESNKNAGNAILYECVETIMSIEDNGGLRVLAINILGRFLSNRDNNIRYVALNM 278
             AQVATKTESNKNAGNA+LYECVETIM+IED   LRVLAINILGRFLSNRDNNIRYVALNM
Sbjct:   276 AQVATKTESNKNAGNAVLYECVETIMAIEDTNSLRVLAINILGRFLSNRDNNIRYVALNM 335

Query:   279 LMKAITVDAQAVQRHRATILECVKDLDASIRKRALELVYLLVNESNVKPLTKELIDYLEI 338
             LMKAIT D QAVQRHR TILECVKD DASIRKRALELV LLVNE+NV  LTKELIDYLEI
Sbjct:   336 LMKAITFDDQAVQRHRVTILECVKDPDASIRKRALELVTLLVNENNVTQLTKELIDYLEI 395

Query:   339 SDQEFKGDLTAKICSMVEKFSPDKIWYIDQMLKVLSEAGNFVKDEVWHALIVVISNASDL 398
             SD++FK DL+AKIC +VEKFSP+K+WYIDQMLKVL EAG FVKD+VWHALIVVISNAS+L
Sbjct:   396 SDEDFKEDLSAKICFIVEKFSPEKLWYIDQMLKVLCEAGKFVKDDVWHALIVVISNASEL 455

Query:   399 HGYTVRALYRAVQTSIEQESLVRVAIWCIGEYGDMLVNNVGVLNIEDPITVTESDAVDVV 458
             HGYTVRALY++V T  EQE+LVRVA+WCIGEYGD+LVNNVG+L IEDPITVTESDAVDV+
Sbjct:   456 HGYTVRALYKSVLTYSEQETLVRVAVWCIGEYGDLLVNNVGMLGIEDPITVTESDAVDVI 515

Query:   459 EIAIKHHSSDITTKAMAMVALLKLSSRFPSCSERIRDIIVQNKGSLVLELQQRSIEFNSI 518
             E AI  H+SD TTKAMA+VALLKLSSRFPS SERI+DIIV+ KGSL+LE+QQR+IE+NSI
Sbjct:   516 EDAITRHNSDSTTKAMALVALLKLSSRFPSISERIKDIIVKQKGSLLLEMQQRAIEYNSI 575

Query:   519 VEKHQNIRSTLVERMPVLDEATFSGRRAGSLPATVSTSSGTSLNLPNGVAKXXXXXXXXX 578
             V++H+NIRS+LV+RMPVLDEATF+ RRAGS PA+VST +  S++L NGV K         
Sbjct:   576 VDRHKNIRSSLVDRMPVLDEATFNVRRAGSFPASVSTMAKPSVSLQNGVEKLPVAPLVDL 635

Query:   579 XXXXXXXXXXXXX-SGNDFLQDLLGVDVSPASVQPGTSQAPKAGTDVLLDLLSIGSP-PV 636
                           SG DFLQDLLGVD+  +S Q G +QAPKAGTD+LLD+LSIG+P P 
Sbjct:   636 LDLDSDDIMAAPSPSGTDFLQDLLGVDLGSSSAQYGATQAPKAGTDLLLDILSIGTPSPA 695

Query:   637 QNNSTPSDILSSSQDNKSSVAILDGLS-PAP----SGGAASMIDLLDGFVPNSPKPEDNG 691
             QN+++   +LS +  N +    LD LS PAP    +  +  M DLLDG  P+  K   NG
Sbjct:   696 QNSTSSIGLLSIADVNNNPSIALDTLSSPAPPHVATTSSTGMFDLLDGLSPSPSKEATNG 755

Query:   692 PAYPSIVAFESSSLRLTFNFSKPPGNPQTTLIQATFTNLSPNVYTDFVFQAAVPKFLQLH 751
             PAY  IVA+ESSSL++ F FSK PGN QTT +QATFTNLSPN +TDF+FQAAVPKFLQLH
Sbjct:   756 PAYAPIVAYESSSLKIEFTFSKTPGNLQTTNVQATFTNLSPNTFTDFIFQAAVPKFLQLH 815

Query:   752 LDPASGNTLPASGNGSITQTLRVTNSQHGKKPLVMRTRIAYKLNNRDVLEEGQINNFPRD 811
             LDPAS NTL ASG+G+ITQ LRVTNSQ GKK LVMR RI YKLN +DVLEEGQ++NFPR 
Sbjct:   816 LDPASSNTLLASGSGAITQNLRVTNSQQGKKSLVMRMRIGYKLNGKDVLEEGQVSNFPRG 875

Query:   812 L 812
             L
Sbjct:   876 L 876
GO:0005794 "Golgi apparatus" evidence=IEA
GO:0006886 "intracellular protein transport" evidence=IEA
GO:0008565 "protein transporter activity" evidence=IEA
GO:0015031 "protein transport" evidence=IEA
GO:0016192 "vesicle-mediated transport" evidence=IEA;ISS
GO:0030117 "membrane coat" evidence=IEA
GO:0030131 "clathrin adaptor complex" evidence=IEA
GO:0030276 "clathrin binding" evidence=ISS
GO:0030121 "AP-1 adaptor complex" evidence=ISS
GO:0005515 "protein binding" evidence=IPI
ZFIN|ZDB-GENE-030131-3187 ap1g1 "adaptor-related protein complex 1, gamma 1 subunit" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0281957 ap1g1 "gamma adaptin" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
MGI|MGI:1328307 Ap1g2 "adaptor protein complex AP-1, gamma 2 subunit" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|E2R7K5 AP1G2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
RGD|2324507 Ap1g2 "adaptor-related protein complex 1, gamma 2 subunit" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|O75843 AP1G2 "AP-1 complex subunit gamma-like 2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030616-587 ap1g2 "adaptor-related protein complex 1, gamma 2 subunit" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
WB|WBGene00000158 apg-1 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
UNIPROTKB|E2RPG3 AP1G1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
O43747AP1G1_HUMANNo assigned EC number0.41840.92980.9184yesno
Q9UU81AP1G1_SCHPONo assigned EC number0.34800.92240.8658yesno
Q84K16AP1G1_ARATHNo assigned EC number0.72831.00.9269nono
Q5R5M2AP1G1_PONABNo assigned EC number0.41720.92980.9184yesno
P22892AP1G1_MOUSENo assigned EC number0.41650.93100.9197yesno
Q9ZUI6AP1G2_ARATHNo assigned EC number0.75510.99010.9327yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
estExt_fgenesh4_pm.C_LG_VI0312
hypothetical protein (877 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query812
pfam01602522 pfam01602, Adaptin_N, Adaptin N terminal region 1e-133
pfam02883115 pfam02883, Alpha_adaptinC2, Adaptin C-terminal dom 4e-35
smart00809104 smart00809, Alpha_adaptinC2, Adaptin C-terminal do 3e-31
COG5096757 COG5096, COG5096, Vesicle coat complex, various su 0.002
>gnl|CDD|216598 pfam01602, Adaptin_N, Adaptin N terminal region Back     alignment and domain information 
 Score =  405 bits (1043), Expect = e-133
 Identities = 176/548 (32%), Positives = 275/548 (50%), Gaps = 77/548 (14%)

Query: 27  RAVVRKECAAIRAAINENDQDYRHRNLAKLMFIHMLGYPTHFGQMECLKSIASAGFPEKR 86
           R  +++E A I  +  ++ +  +   + KL+++ MLG    F   E +K +AS  F  KR
Sbjct: 1   RKRIQQELARILNSFRDDPR-KKKEAVKKLIYLIMLGEDISFLFFEVVKLVASNDFTLKR 59

Query: 87  IGYLGLMLLLDERQEVLMLVTNSLKQDLNHTNQYIVGLALCALGNICSAEMARDLAPEVE 146
           +GYL L LL +E  ++ +LVTNS+K+DL   N  I GLAL  L  I   E+ARDLAP+++
Sbjct: 60  LGYLYLKLLAEESPDLAILVTNSIKKDLQSPNPLIRGLALRTLSCIRVPELARDLAPDIK 119

Query: 147 RLLQFRDPNIRKK-----PKCL--------DGLVKTLRDVVNSP---------------Y 178
           +LL  RDP +RKK      K          D LV  L+++++                  
Sbjct: 120 KLLVDRDPYVRKKAALAILKLYRKDPDLVRDFLVPELKELLSDKDPGVVSAAVALLYEIR 179

Query: 179 APE---------------YDIAGITDPFLHIRLLKLLHVLG-QGDADASDCMNDILAQVA 222
             +                ++  + +P+L +++L+LL     Q   +  + + DIL  + 
Sbjct: 180 KNDRLYLNKLLPLLVRRLCNLLTVCNPWLQVKILRLLTRYAPQDPREPKELLEDILNLLQ 239

Query: 223 TKTESNKNAGNAILYECVETIMSIEDNGGLRVLAINILGRFLSNRDNNIRYVALNMLMKA 282
                  N+ NA+LYE V+TI+ ++    L VLA+N LGR LS+ D N+RYVAL  L K 
Sbjct: 240 -------NSNNAVLYEAVKTIIHLDPEPELIVLAVNALGRLLSSPDENLRYVALRNLNKI 292

Query: 283 ITVDAQAVQRHRATILECVK-DLDASIRKRALELVYLLVNESNVKPLTKELIDYL-EISD 340
           +     AVQ H   I+ C+K D D SIR RAL+L+Y LV+ESNVK + KEL+ Y+ EI+D
Sbjct: 293 LEKHPPAVQ-HLDLIIFCLKTDDDISIRLRALDLLYKLVDESNVKEIVKELLKYVSEIAD 351

Query: 341 QEFKGDLTAKICSMVEKFSPDKIWYIDQMLKVLSEAGNFVKDEVWHALIVVISNASDLHG 400
            EFK  L   I  + EKF  D  W ID +L++LS AG++V DE+   +  +I    +L  
Sbjct: 352 PEFKIKLVKAIGRLAEKFPTDAEWCIDVLLELLSLAGSYVVDEIVEVIRDIIRKYPELRE 411

Query: 401 YTVRALYRAVQTSIEQESLVRVAIWCIGEYGDMLVNNVGVLNIEDPITVTESDAVDVVE- 459
           Y +  L   ++  IE       A+W +GEYG+                +  +   D++  
Sbjct: 412 YILEHLCELLED-IESPEARAAALWILGEYGE----------------LIPNSPSDLLRS 454

Query: 460 IAIKHHSSDITTKAMAMVALLKLSSRFPSCS--ERIRDIIVQ--NKGSLVLELQQRSIEF 515
           I        +  +   + AL+KLS  FP       I  +++    + S  LEL+ R++E+
Sbjct: 455 ILEVFVLESLKVRLALLTALVKLSLTFPDEEVQNLIVQVVLSLATQDSSDLELRDRAVEY 514

Query: 516 NSIVEKHQ 523
             ++    
Sbjct: 515 LRLLSLAD 522

This family consists of the N terminal region of various alpha, beta and gamma subunits of the AP-1, AP-2 and AP-3 adaptor protein complexes. The adaptor protein (AP) complexes are involved in the formation of clathrin-coated pits and vesicles. The N-terminal region of the various adaptor proteins (APs) is constant by comparison to the C-terminal which is variable within members of the AP-2 family; and it has been proposed that this constant region interacts with another uniform component of the coated vesicles. Length = 522
>gnl|CDD|217268 pfam02883, Alpha_adaptinC2, Adaptin C-terminal domain Back     alignment and domain information
>gnl|CDD|197886 smart00809, Alpha_adaptinC2, Adaptin C-terminal domain Back     alignment and domain information
>gnl|CDD|227427 COG5096, COG5096, Vesicle coat complex, various subunits [Intracellular trafficking and secretion] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 812
KOG1062866 consensus Vesicle coat complex AP-1, gamma subunit 100.0
KOG1077 938 consensus Vesicle coat complex AP-2, alpha subunit 100.0
PTZ00429746 beta-adaptin; Provisional 100.0
PF01602526 Adaptin_N: Adaptin N terminal region; InterPro: IP 100.0
KOG1059877 consensus Vesicle coat complex AP-3, delta subunit 100.0
KOG1060 968 consensus Vesicle coat complex AP-3, beta subunit 100.0
KOG1061734 consensus Vesicle coat complex AP-1/AP-2/AP-4, bet 100.0
KOG1058 948 consensus Vesicle coat complex COPI, beta subunit 100.0
COG5096757 Vesicle coat complex, various subunits [Intracellu 100.0
KOG1078865 consensus Vesicle coat complex COPI, gamma subunit 100.0
COG5240898 SEC21 Vesicle coat complex COPI, gamma subunit [In 99.96
PF02883115 Alpha_adaptinC2: Adaptin C-terminal domain; InterP 99.87
smart00809104 Alpha_adaptinC2 Adaptin C-terminal domain. Adaptin 99.83
KOG1086594 consensus Cytosolic sorting protein/ADP-ribosylati 99.73
PF01602526 Adaptin_N: Adaptin N terminal region; InterPro: IP 98.94
PF14764459 SPG48: AP-5 complex subunit, vesicle trafficking 98.84
PTZ00429746 beta-adaptin; Provisional 98.6
PRK09687280 putative lyase; Provisional 98.31
PLN03200 2102 cellulose synthase-interactive protein; Provisiona 98.3
KOG1062 866 consensus Vesicle coat complex AP-1, gamma subunit 98.25
PRK13800897 putative oxidoreductase/HEAT repeat-containing pro 98.25
PLN03200 2102 cellulose synthase-interactive protein; Provisiona 98.24
PRK09687280 putative lyase; Provisional 98.19
PRK13800897 putative oxidoreductase/HEAT repeat-containing pro 98.0
PF12717178 Cnd1: non-SMC mitotic condensation complex subunit 97.86
KOG18241233 consensus TATA-binding protein-interacting protein 97.49
PF10508503 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; 97.48
KOG2023885 consensus Nuclear transport receptor Karyopherin-b 97.47
KOG1059 877 consensus Vesicle coat complex AP-3, delta subunit 97.44
KOG0212675 consensus Uncharacterized conserved protein [Funct 97.4
KOG02131172 consensus Splicing factor 3b, subunit 1 [RNA proce 97.4
KOG1058 948 consensus Vesicle coat complex COPI, beta subunit 97.38
KOG2171 1075 consensus Karyopherin (importin) beta 3 [Nuclear s 97.36
KOG2023 885 consensus Nuclear transport receptor Karyopherin-b 97.3
KOG1077938 consensus Vesicle coat complex AP-2, alpha subunit 97.28
PF10508503 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; 97.23
KOG1020 1692 consensus Sister chromatid cohesion protein SCC2/N 97.19
PF05804708 KAP: Kinesin-associated protein (KAP) 97.1
KOG1078865 consensus Vesicle coat complex COPI, gamma subunit 97.01
PF12717178 Cnd1: non-SMC mitotic condensation complex subunit 96.87
KOG0212675 consensus Uncharacterized conserved protein [Funct 96.83
KOG0166514 consensus Karyopherin (importin) alpha [Intracellu 96.73
PF05804708 KAP: Kinesin-associated protein (KAP) 96.71
KOG1241859 consensus Karyopherin (importin) beta 1 [Nuclear s 96.66
cd00256429 VATPase_H VATPase_H, regulatory vacuolar ATP synth 96.49
KOG1824 1233 consensus TATA-binding protein-interacting protein 96.42
KOG1061734 consensus Vesicle coat complex AP-1/AP-2/AP-4, bet 96.36
KOG02131172 consensus Splicing factor 3b, subunit 1 [RNA proce 96.29
cd00020120 ARM Armadillo/beta-catenin-like repeats. An approx 96.2
COG5181975 HSH155 U2 snRNP spliceosome subunit [RNA processin 96.18
KOG0166514 consensus Karyopherin (importin) alpha [Intracellu 96.15
COG5240 898 SEC21 Vesicle coat complex COPI, gamma subunit [In 96.07
COG1413335 FOG: HEAT repeat [Energy production and conversion 95.79
KOG2259823 consensus Uncharacterized conserved protein [Funct 95.78
PF12719298 Cnd3: Nuclear condensing complex subunits, C-term 95.78
KOG2171 1075 consensus Karyopherin (importin) beta 3 [Nuclear s 95.78
KOG2259823 consensus Uncharacterized conserved protein [Funct 95.51
PF04826254 Arm_2: Armadillo-like; InterPro: IPR006911 This en 95.44
KOG1060 968 consensus Vesicle coat complex AP-3, beta subunit 95.31
KOG1924 1102 consensus RhoA GTPase effector DIA/Diaphanous [Sig 95.23
KOG1020 1692 consensus Sister chromatid cohesion protein SCC2/N 95.19
KOG1241859 consensus Karyopherin (importin) beta 1 [Nuclear s 95.17
COG5096 757 Vesicle coat complex, various subunits [Intracellu 95.0
KOG4224550 consensus Armadillo repeat protein VAC8 required f 94.87
PF12348228 CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi 94.81
KOG12481176 consensus Uncharacterized conserved protein [Funct 94.78
KOG1525 1266 consensus Sister chromatid cohesion complex Cohesi 94.6
PF1063378 NPCBM_assoc: NPCBM-associated, NEW3 domain of alph 94.59
PF14796145 AP3B1_C: Clathrin-adaptor complex-3 beta-1 subunit 94.12
PF1275597 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region 93.96
TIGR02270410 conserved hypothetical protein. Members are found 93.89
KOG1992960 consensus Nuclear export receptor CSE1/CAS (import 93.88
PF1364688 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I 93.87
KOG1242569 consensus Protein containing adaptin N-terminal re 93.35
PF12719298 Cnd3: Nuclear condensing complex subunits, C-term 93.13
COG5215858 KAP95 Karyopherin (importin) beta [Intracellular t 92.62
COG5215858 KAP95 Karyopherin (importin) beta [Intracellular t 92.62
PF04826254 Arm_2: Armadillo-like; InterPro: IPR006911 This en 92.5
COG5218 885 YCG1 Chromosome condensation complex Condensin, su 92.29
PF05918556 API5: Apoptosis inhibitory protein 5 (API5); Inter 92.17
PF1364688 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I 92.1
KOG2213460 consensus Apoptosis inhibitor 5/fibroblast growth 91.43
PF12460415 MMS19_C: RNAPII transcription regulator C-terminal 91.23
PF14500262 MMS19_N: Dos2-interacting transcription regulator 91.04
KOG1240 1431 consensus Protein kinase containing WD40 repeats [ 90.99
PF12460415 MMS19_C: RNAPII transcription regulator C-terminal 90.47
KOG4413524 consensus 26S proteasome regulatory complex, subun 90.15
KOG0414 1251 consensus Chromosome condensation complex Condensi 90.1
PF12348228 CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi 89.88
KOG12481176 consensus Uncharacterized conserved protein [Funct 89.69
KOG0915 1702 consensus Uncharacterized conserved protein [Funct 89.32
COG1413335 FOG: HEAT repeat [Energy production and conversion 89.28
PF12830187 Nipped-B_C: Sister chromatid cohesion C-terminus 89.05
cd00020120 ARM Armadillo/beta-catenin-like repeats. An approx 89.04
PF12530234 DUF3730: Protein of unknown function (DUF3730) ; I 88.63
PF05918556 API5: Apoptosis inhibitory protein 5 (API5); Inter 88.47
TIGR02270410 conserved hypothetical protein. Members are found 88.38
PF03224312 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004 88.17
PF08167165 RIX1: rRNA processing/ribosome biogenesis 86.81
PF02854209 MIF4G: MIF4G domain; InterPro: IPR003890 This entr 86.23
KOG0168 1051 consensus Putative ubiquitin fusion degradation pr 86.14
PF1036392 DUF2435: Protein of unknown function (DUF2435) 85.88
COG5218 885 YCG1 Chromosome condensation complex Condensin, su 85.74
PF1275597 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region 85.32
KOG1242569 consensus Protein containing adaptin N-terminal re 84.12
KOG1293678 consensus Proteins containing armadillo/beta-caten 82.97
KOG4224550 consensus Armadillo repeat protein VAC8 required f 82.57
smart00638574 LPD_N Lipoprotein N-terminal Domain. 82.56
KOG2160342 consensus Armadillo/beta-catenin-like repeat-conta 81.74
KOG04141251 consensus Chromosome condensation complex Condensi 81.51
PF1351355 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O 80.2
KOG4653982 consensus Uncharacterized conserved protein [Funct 80.18
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information 
Probab=100.00  E-value=4.1e-161  Score=1343.92  Aligned_cols=794  Identities=57%  Similarity=0.874  Sum_probs=682.3

Q ss_pred             CCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHcc--CChHHHHHHHHHHHHHHHcCCCCCChhHHHHHhhc
Q 045023            1 MNPFSSGTRLRDMIRSIRACKTAAEERAVVRKECAAIRAAINE--NDQDYRHRNLAKLMFIHMLGYPTHFGQMECLKSIA   78 (812)
Q Consensus         1 ~~~~m~~~~L~~fI~~vr~~~t~~eEr~~i~~E~a~Ir~~l~~--~~~~~r~~~l~KLiyl~~lG~~~~~~~~evikli~   78 (812)
                      +++++.+++|++|||+||+|||+||||++|+||||.||+.|++  .+..+|+++|+||+|+||+|||+||||+||+||++
T Consensus         1 ~~~~~~~srL~dlIr~IraakT~AEEr~vI~kE~a~IRa~ire~~~d~~~r~rniaKLlYi~MLGypahFGqieclKLia   80 (866)
T KOG1062|consen    1 GNMFAPSSRLRDLIRAIRAAKTAAEERAVIQKECAAIRASIREPTNDPRKRHRNIAKLLYIHMLGYPAHFGQIECLKLIA   80 (866)
T ss_pred             CCCCCccchHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCCccchhhHHHHHhc
Confidence            5788888999999999999999999999999999999999999  58899999999999999999999999999999999


Q ss_pred             cCCCCchhHHHHHHHHhcccchhHHHHHHHHHHhhcCCCCHhHHHHHHHHHhccCchhhHHHHHHHHHHhccCCCcceec
Q 045023           79 SAGFPEKRIGYLGLMLLLDERQEVLMLVTNSLKQDLNHTNQYIVGLALCALGNICSAEMARDLAPEVERLLQFRDPNIRK  158 (812)
Q Consensus        79 s~~~~~KRlgYL~~~~ll~~~~el~~L~~Nsl~kDL~s~n~~i~~lAL~~Ls~I~~~e~~~~l~~~V~~ll~~~~pyVRK  158 (812)
                      |++|.+||+|||++|+++||++|+++|+||+++|||+|+|.|++|+|||++|+|+++||||+|+|+|+++++|++|||||
T Consensus        81 s~~f~dKRiGYLaamLlLdE~qdvllLltNslknDL~s~nq~vVglAL~alg~i~s~EmardlapeVe~Ll~~~~~~irK  160 (866)
T KOG1062|consen   81 SDNFLDKRIGYLAAMLLLDERQDLLLLLTNSLKNDLNSSNQYVVGLALCALGNICSPEMARDLAPEVERLLQHRDPYIRK  160 (866)
T ss_pred             CCCchHHHHHHHHHHHHhccchHHHHHHHHHHHhhccCCCeeehHHHHHHhhccCCHHHhHHhhHHHHHHHhCCCHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cC--------------------------------------------------------CCchhHHHHHHHHhcCCCCCcc
Q 045023          159 KP--------------------------------------------------------KCLDGLVKTLRDVVNSPYAPEY  182 (812)
Q Consensus       159 kA--------------------------------------------------------~~v~~lv~~L~~L~~~~~~pe~  182 (812)
                      ||                                                        ++++.+|.+|+++..++|+|||
T Consensus       161 KA~Lca~r~irK~P~l~e~f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~l~~~lV~iLk~l~~~~yspey  240 (866)
T KOG1062|consen  161 KAALCAVRFIRKVPDLVEHFVIAFRKLLCEKHHGVLIAGLHLITELCKISPDALSYFRDLVPSLVKILKQLTNSGYSPEY  240 (866)
T ss_pred             HHHHHHHHHHHcCchHHHHhhHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCCCCcc
Confidence            99                                                        4788999999999999999999


Q ss_pred             ccccCCChhHHHHHHHHHHhcCCCCchhhhHHHHHHHHHhhccccCCCCcchHHHHHHHHHHhcCCChhHHHHHHHHHHH
Q 045023          183 DIAGITDPFLHIRLLKLLHVLGQGDADASDCMNDILAQVATKTESNKNAGNAILYECVETIMSIEDNGGLRVLAINILGR  262 (812)
Q Consensus       183 ~~~~~~dpwlqv~lL~lL~~l~~~~~~~~~~l~diL~~v~~~~~~~kn~~~aVl~e~v~~i~~i~~~~~L~~l~i~~L~~  262 (812)
                      ||+|++|||+||+|||+|+.|+++|++.+|.|+|+|+++++|||++||+||||+||||+||+.|.++++||++|+|+|||
T Consensus       241 dv~gi~dPFLQi~iLrlLriLGq~d~daSd~M~DiLaqvatntdsskN~GnAILYE~V~TI~~I~~~~~LrvlainiLgk  320 (866)
T KOG1062|consen  241 DVHGISDPFLQIRILRLLRILGQNDADASDLMNDILAQVATNTDSSKNAGNAILYECVRTIMDIRSNSGLRVLAINILGK  320 (866)
T ss_pred             CccCCCchHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhcCCCcchHHHHHHHHHHHHhhCHHHHHHhHhhhcccccccCHhHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhhcCHH
Q 045023          263 FLSNRDNNIRYVALNMLMKAITVDAQAVQRHRATILECVKDLDASIRKRALELVYLLVNESNVKPLTKELIDYLEISDQE  342 (812)
Q Consensus       263 fL~~~d~niryvaL~~L~~l~~~~p~~v~~h~~~i~~cL~d~D~sIr~~aLell~~l~n~~Nv~~Iv~eLl~yl~~~d~~  342 (812)
                      ||.++|+|+|||||++|.++++.+|++|||||.+|++||+|+|.+||||||||+|+|+|++|++.|++||++||..+|++
T Consensus       321 FL~n~d~NirYvaLn~L~r~V~~d~~avqrHr~tIleCL~DpD~SIkrralELs~~lvn~~Nv~~mv~eLl~fL~~~d~~  400 (866)
T KOG1062|consen  321 FLLNRDNNIRYVALNMLLRVVQQDPTAVQRHRSTILECLKDPDVSIKRRALELSYALVNESNVRVMVKELLEFLESSDED  400 (866)
T ss_pred             HhcCCccceeeeehhhHHhhhcCCcHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHhccHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhhCCchhHHHHHHHHHHhhcCccchHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHhhc----cchH
Q 045023          343 FKGDLTAKICSMVEKFSPDKIWYIDQMLKVLSEAGNFVKDEVWHALIVVISNA-SDLHGYTVRALYRAVQTS----IEQE  417 (812)
Q Consensus       343 ~~~~li~~I~~la~k~~~~~~w~vd~ll~lL~~~g~~v~~e~i~~i~~li~~~-p~l~~~~v~~L~~~l~~~----~~~~  417 (812)
                      ||.+++.+|+.+||||+|+.+||||+++++++.+|+||.+++|+.++++|.+. +++|+|++.+||..+..+    ++++
T Consensus       401 ~k~~~as~I~~laEkfaP~k~W~idtml~Vl~~aG~~V~~dv~~nll~LIa~~~~e~~~y~~~rLy~a~~~~~~~~is~e  480 (866)
T KOG1062|consen  401 FKADIASKIAELAEKFAPDKRWHIDTMLKVLKTAGDFVNDDVVNNLLRLIANAFQELHEYAVLRLYLALSEDTLLDISQE  480 (866)
T ss_pred             HHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhcccccchhhHHHHHHHHhcCCcchhhHHHHHHHHHHhhhhhhhhhhh
Confidence            99999999999999999999999999999999999999999999999999998 899999999999999865    7889


Q ss_pred             HHHHHHHHhhhhcccccccCccccccCCCCccChhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHccCCCChHHHHHHH
Q 045023          418 SLVRVAIWCIGEYGDMLVNNVGVLNIEDPITVTESDAVDVVEIAIKHHSSDITTKAMAMVALLKLSSRFPSCSERIRDII  497 (812)
Q Consensus       418 ~l~~~~~WiiGEY~~~l~~~~~~~~~~~~~~v~~~~vi~~l~~~l~~~~~~~~vk~~iLtAl~KL~~r~p~~~~~i~~ll  497 (812)
                      .++++++||||||||++.++..   +++|..+||+++++++++++.++..+..||.|+|+|++||++|++.+.++|++++
T Consensus       481 ~l~qVa~W~IGEYGdlll~~~~---~~~p~~vtesdivd~l~~v~~~~~s~~~tk~yal~Al~KLSsr~~s~~~ri~~lI  557 (866)
T KOG1062|consen  481 PLLQVASWCIGEYGDLLLDGAN---EEEPIKVTESDIVDKLEKVLMSHSSDSTTKGYALTALLKLSSRFHSSSERIKQLI  557 (866)
T ss_pred             hHHHHHHHHhhhhhHHhhcCcc---ccCCCcCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhhccccHHHHHHHH
Confidence            9999999999999999998764   2688999999999999999999988999999999999999999999999999999


Q ss_pred             HHhhCCCChHHHHHHHHHHHHhccCHHHHHHhhhcCCCCcccccccccCCCCCCccccCCCCccCCCCCCCCCCCCCccc
Q 045023          498 VQNKGSLVLELQQRSIEFNSIVEKHQNIRSTLVERMPVLDEATFSGRRAGSLPATVSTSSGTSLNLPNGVAKPAAAPLVD  577 (812)
Q Consensus       498 ~~~~~s~~~evqqRA~ey~~Ll~~~~~~~~~ll~~mP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  577 (812)
                      ..|+.|.|.|+||||+||..||.++.++|+.+|++||.+++.++.....+..+.... .+..++. +.+. ........|
T Consensus       558 ~~~~~s~~~elQQRa~E~~~l~~~~~~lr~siLe~mp~~e~~~~~~~~~g~~~~~i~-~~~~p~~-~~~~-~~~~~~l~d  634 (866)
T KOG1062|consen  558 SSYKSSLDTELQQRAVEYNALFAKDKHLRKSILERMPSCEDITVDARLDGNGPAAIE-QGAEPYK-SAGE-SLGVAELSD  634 (866)
T ss_pred             HHhcccccHHHHHHHHHHHHHHHHHHHHHHHhcccCccccccccccccccchHHHHH-hccCCCc-cccc-ccccchhhh
Confidence            999999999999999999999999999999999999999987654332221111100 0000000 0111 111112234


Q ss_pred             ccccCCCCCCCCCCCCcchhhhhhCCCCCCCCCCCCCCCCCCCChhhhhhhhCCCCCCCCCCCCCccccccc------cC
Q 045023          578 LLDLSSDDAPVPSSSGNDFLQDLLGVDVSPASVQPGTSQAPKAGTDVLLDLLSIGSPPVQNNSTPSDILSSS------QD  651 (812)
Q Consensus       578 lldl~~~~~~~~~~~~~d~l~dl~g~~~~~~~~~~~~~~~~~~~~~~l~dl~~~~~~~~~~~~~~~~~~~~~------~~  651 (812)
                      ++++.+...|   ..+...+.|++|...++|..++++.+.++...+.+.|++|...++..+.....+..+.+      +.
T Consensus       635 ~~~~~~~~~~---~s~~~~l~~~L~~~~~~p~~~~~~~p~p~~~~~~~~~I~~~~~s~~~~~~~~~~L~~~~~~~~~~s~  711 (866)
T KOG1062|consen  635 LLPLDSKETP---TSSLNDLEDLLDKDESSPGASNGAAPVPSEGGNVLQDILGDVLSQSKNSKEKLDLAGSLFVGSSSSA  711 (866)
T ss_pred             ccCCCCCcCC---cccccchhccCCCccCCCCCCCCCCCCCCCccchhhhhhhccccccccchhccccccccccccCCCC
Confidence            4444433322   33356677888876555544433322222334556666664222211111111111110      00


Q ss_pred             CcchhhhccCCCCCCCCCCcccccccCCCCCCCCCCCCCCCCCCceEEEecCCeEEEEEeecCCCCCCeEEEEEEEEeCC
Q 045023          652 NKSSVAILDGLSPAPSGGAASMIDLLDGFVPNSPKPEDNGPAYPSIVAFESSSLRLTFNFSKPPGNPQTTLIQATFTNLS  731 (812)
Q Consensus       652 ~p~~~~~~~~~~~~~~~~~~~~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~i~~~~~n~~  731 (812)
                      +|+.    .+   ...|.++..+++++++...|.......+..|++++|+++++.+++.+.+.+.++..++++++|+|.+
T Consensus       712 a~~~----~s---~~sp~~s~~~s~l~~l~p~p~~~~~~~~~~~~~~~~dkssl~~~~~~~k~~~n~~~t~i~~~~tn~s  784 (866)
T KOG1062|consen  712 APPA----PS---GTSPSSSQPFSLLSGLSPDPSKNTLAATDYPSIKAYDKSSLLVELSFTKGPSNKKTTVITLTFTNLS  784 (866)
T ss_pred             CCCC----cC---CCCCcCCCcchhhcccCCCccccccccccCCcceeeecccceeeeeeccCCCCCceeEEEeeccCCC
Confidence            0110    00   0011122356777777643221111222467899999999999999999888888999999999999


Q ss_pred             Ccc-ccceEEEEeecCceeEeeeCCCCCCcCCCCCCCccEEEEEEeCCCCCCCeEEEEEEEEEeCCeeeeeeeEecCCCC
Q 045023          732 PNV-YTDFVFQAAVPKFLQLHLDPASGNTLPASGNGSITQTLRVTNSQHGKKPLVMRTRIAYKLNNRDVLEEGQINNFPR  810 (812)
Q Consensus       732 ~~~-i~~f~fq~AVpK~~kL~l~p~S~~~l~~~~~~~itQ~~~i~n~~~~~k~l~lr~klsY~~~g~~~~e~~~v~~~p~  810 (812)
                      +.+ +++|.||+||||+++++++|+||+.+++.+.++++|.|+|.|+++.  +++||.|++|..+|+.+.|+++|++||.
T Consensus       785 ~~~~l~~F~~~aAv~ks~ql~l~~~ss~~~~~~~~g~~tq~~rv~n~~~~--~l~~r~rl~~~~~G~s~~e~~ev~~~p~  862 (866)
T KOG1062|consen  785 PNTDLTDFHFQAAVPKSLQLQLQPASSNSLPASGGGHITQVLRVLNPQKS--TLKLRLRLSYSLNGSSVLENFEVDNLPR  862 (866)
T ss_pred             CCcchhhhcccccchHHHhhccCCccccccCcCCCCcceeEEEEecCCCc--eEEEEEEEEeecCCchHHhhhhhccCcc
Confidence            987 9999999999999999999999999999999899999999999864  9999999999999999999999999997


Q ss_pred             CC
Q 045023          811 DL  812 (812)
Q Consensus       811 ~~  812 (812)
                      ++
T Consensus       863 ~~  864 (866)
T KOG1062|consen  863 QL  864 (866)
T ss_pred             cc
Confidence            53

>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PTZ00429 beta-adaptin; Provisional Back     alignment and domain information
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion] Back     alignment and domain information
>PF02883 Alpha_adaptinC2: Adaptin C-terminal domain; InterPro: IPR008152 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>smart00809 Alpha_adaptinC2 Adaptin C-terminal domain Back     alignment and domain information
>KOG1086 consensus Cytosolic sorting protein/ADP-ribosylation factor effector GGA [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>PF14764 SPG48: AP-5 complex subunit, vesicle trafficking Back     alignment and domain information
>PTZ00429 beta-adaptin; Provisional Back     alignment and domain information
>PRK09687 putative lyase; Provisional Back     alignment and domain information
>PLN03200 cellulose synthase-interactive protein; Provisional Back     alignment and domain information
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional Back     alignment and domain information
>PLN03200 cellulose synthase-interactive protein; Provisional Back     alignment and domain information
>PRK09687 putative lyase; Provisional Back     alignment and domain information
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional Back     alignment and domain information
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1 Back     alignment and domain information
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only] Back     alignment and domain information
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells Back     alignment and domain information
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0212 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification] Back     alignment and domain information
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells Back     alignment and domain information
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] Back     alignment and domain information
>PF05804 KAP: Kinesin-associated protein (KAP) Back     alignment and domain information
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1 Back     alignment and domain information
>KOG0212 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF05804 KAP: Kinesin-associated protein (KAP) Back     alignment and domain information
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments Back     alignment and domain information
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only] Back     alignment and domain information
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification] Back     alignment and domain information
>cd00020 ARM Armadillo/beta-catenin-like repeats Back     alignment and domain information
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification] Back     alignment and domain information
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion] Back     alignment and domain information
>COG1413 FOG: HEAT repeat [Energy production and conversion] Back     alignment and domain information
>KOG2259 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain Back     alignment and domain information
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2259 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function Back     alignment and domain information
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton] Back     alignment and domain information
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] Back     alignment and domain information
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] Back     alignment and domain information
>KOG1248 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known Back     alignment and domain information
>PF14796 AP3B1_C: Clathrin-adaptor complex-3 beta-1 subunit C-terminal Back     alignment and domain information
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region Back     alignment and domain information
>TIGR02270 conserved hypothetical protein Back     alignment and domain information
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A Back     alignment and domain information
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain Back     alignment and domain information
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion] Back     alignment and domain information
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion] Back     alignment and domain information
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function Back     alignment and domain information
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning] Back     alignment and domain information
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms Back     alignment and domain information
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A Back     alignment and domain information
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms] Back     alignment and domain information
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins Back     alignment and domain information
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II Back     alignment and domain information
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] Back     alignment and domain information
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins Back     alignment and domain information
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] Back     alignment and domain information
>KOG1248 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG0915 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>COG1413 FOG: HEAT repeat [Energy production and conversion] Back     alignment and domain information
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus Back     alignment and domain information
>cd00020 ARM Armadillo/beta-catenin-like repeats Back     alignment and domain information
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length Back     alignment and domain information
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms Back     alignment and domain information
>TIGR02270 conserved hypothetical protein Back     alignment and domain information
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane Back     alignment and domain information
>PF08167 RIX1: rRNA processing/ribosome biogenesis Back     alignment and domain information
>PF02854 MIF4G: MIF4G domain; InterPro: IPR003890 This entry represents an MIF4G-like domain Back     alignment and domain information
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF10363 DUF2435: Protein of unknown function (DUF2435) Back     alignment and domain information
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning] Back     alignment and domain information
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region Back     alignment and domain information
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only] Back     alignment and domain information
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>smart00638 LPD_N Lipoprotein N-terminal Domain Back     alignment and domain information
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B Back     alignment and domain information
>KOG4653 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query812
1w63_A618 Ap1 Clathrin Adaptor Core Length = 618 1e-155
2jkr_A623 Ap2 Clathrin Adaptor Core With Dileucine Peptide Rm 2e-42
2vgl_A621 Ap2 Clathrin Adaptor Core Length = 621 2e-42
3zy7_A122 Crystal Structure Of Computationally Redesigned Gam 4e-17
2e9g_A131 Solution Structure Of The Alpha Adaptinc2 Domain Fr 6e-17
1iu1_A146 Crystal Structure Of Human Gamma1-Adaptin Ear Domai 2e-15
1gyu_A140 Gamma-Adaptin Appendage Domain From Clathrin Adapto 5e-15
1gyw_A128 Gamma-Adaptin Appendage Domain From Clathrin Adapto 5e-15
2a7b_A120 On The Routine Use Of Soft X-Rays In Macromolecular 6e-15
1gyv_A120 Gamma-Adaptin Appendage Domain From Clathrin Adapto 4e-14
1p4u_A153 Crystal Structure Of Gga3 Gae Domain In Complex Wit 2e-09
1om9_A154 Structure Of The Gga1-Appendage In Complex With The 3e-07
1na8_A154 Crystal Structure Of Adp-Ribosylation Factor Bindin 5e-07
2dwx_A133 Co-Crystal Structure Analysis Of Gga1-Gae With The 5e-07
>pdb|1W63|A Chain A, Ap1 Clathrin Adaptor Core Length = 618 Back     alignment and structure 
Iteration: 1

 Score =  546 bits (1407), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 273/591 (46%), Positives = 392/591 (66%), Gaps = 58/591 (9%)
Query: 9   RLRDMIRSIRACKTAAEERAVVRKECAAIRAAINENDQDYRHRNLAKLMFIHMLGYPTHF 68
           RLR++IR+IR  +T AEER +++KECAAIR++  E D  YR RN+AKL+++HMLGYP HF
Sbjct: 11  RLRELIRTIRTARTQAEEREMIQKECAAIRSSFREEDNTYRCRNVAKLLYMHMLGYPAHF 70
Query: 69  GQMECLKSIASAGFPEKRIGYLGLMLLLDERQEVLMLVTNSLKQDLNHTNQYIVGLALCA 128
           GQ+ECLK IAS  F +KRIGYLG MLLLDERQ+V +L+TN +K DLNH+ Q++ GLALC 
Sbjct: 71  GQLECLKLIASQKFTDKRIGYLGAMLLLDERQDVHLLMTNCIKNDLNHSTQFVQGLALCT 130
Query: 129 LGNICSAEMARDLAPEVERLLQFRDPN------------IRKKPKCLD------------ 164
           LG + S+EM RDLA EVE+LL+  +              IRK P+ ++            
Sbjct: 131 LGCMGSSEMCRDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELMEMFLPATKNLLNE 190
Query: 165 --------------------------------GLVKTLRDVVNSPYAPEYDIAGITDPFX 192
                                            LV+ L++++ S Y+PE+D++GI+DPF 
Sbjct: 191 KNHGVLHTSVVLLTEMCERSPDMLAHFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFL 250
Query: 193 XXXXXXXXXXXGQGDADASDCMNDILAQVATKTESNKNAGNAILYECVETIMSIEDNGGL 252
                      G+ D D+S+ MNDILAQVAT TE++KN GNAILYE V TIM I+   GL
Sbjct: 251 QVRILRLLRILGRNDDDSSEAMNDILAQVATNTETSKNVGNAILYETVLTIMDIKSESGL 310
Query: 253 RVLAINILGRFLSNRDNNIRYVALNMLMKAITVDAQAVQRHRATILECVKDLDASIRKRA 312
           RVLAINILGRFL N D NIRYVAL  L+K +  D  AVQRHR+TI++C+KDLD SI++RA
Sbjct: 311 RVLAINILGRFLLNNDKNIRYVALTSLLKTVQTDHNAVQRHRSTIVDCLKDLDVSIKRRA 370
Query: 313 LELVYLLVNESNVKPLTKELIDYLEISDQEFKGDLTAKICSMVEKFSPDKIWYIDQMLKV 372
           +EL + LVN +N++ + KEL+ +L+  + EFK D  + I    EK++P K W+ID +++V
Sbjct: 371 MELSFALVNGNNIRGMMKELLYFLDSCEPEFKADCASGIFLAAEKYAPSKRWHIDTIMRV 430
Query: 373 LSEAGNFVKDEVWHALIVVISNASDLHGYTVRALYRAVQTSIEQESLVRVAIWCIGEYGD 432
           L+ AG++V+D+    LI +I+N+ ++H YTV+ LY+A+     Q+ LV+VA WCIGEYGD
Sbjct: 431 LTTAGSYVRDDAVPNLIQLITNSVEMHAYTVQRLYKAILGDYSQQPLVQVAAWCIGEYGD 490
Query: 433 MLVNNVGVLNIEDPITVTESDAVDVVEIAIKHHSSDITTKAMAMVALLKLSSRFPSCSER 492
           +LV+  G    E+PI VTE + +D++E  +  + S   T+  A+ A++KLS+RF     R
Sbjct: 491 LLVS--GQCEEEEPIQVTEDEVLDILESVLISNMSTSVTRGYALTAIMKLSTRFTCTVNR 548
Query: 493 IRDIIVQNKGSLVLELQQRSIEFNSIVEKHQNIRSTLVERMPVLDEATFSG 543
           I+ ++     S+ +ELQQR++E+N++ +K+ ++RS L+ERMPV+++ T +G
Sbjct: 549 IKKVVSIYGSSIDVELQQRAVEYNALFKKYDHMRSALLERMPVMEKVTTNG 599
>pdb|2JKR|A Chain A, Ap2 Clathrin Adaptor Core With Dileucine Peptide Rm( Phosphos)qikrllse Length = 623 Back     alignment and structure
>pdb|2VGL|A Chain A, Ap2 Clathrin Adaptor Core Length = 621 Back     alignment and structure
>pdb|3ZY7|A Chain A, Crystal Structure Of Computationally Redesigned Gamma- Adaptin Appendage Domain Forming A Symmetric Homodimer Length = 122 Back     alignment and structure
>pdb|2E9G|A Chain A, Solution Structure Of The Alpha Adaptinc2 Domain From Human Adapter-Related Protein Complex 1 Gamma 2 Subunit Length = 131 Back     alignment and structure
>pdb|1IU1|A Chain A, Crystal Structure Of Human Gamma1-Adaptin Ear Domain Length = 146 Back     alignment and structure
>pdb|1GYU|A Chain A, Gamma-Adaptin Appendage Domain From Clathrin Adaptor Ap1 Length = 140 Back     alignment and structure
>pdb|1GYW|A Chain A, Gamma-Adaptin Appendage Domain From Clathrin Adaptor Ap1 A753d Mutant Length = 128 Back     alignment and structure
>pdb|2A7B|A Chain A, On The Routine Use Of Soft X-Rays In Macromolecular Crystallography, Part Iii- The Optimal Data Collection Wavelength Length = 120 Back     alignment and structure
>pdb|1GYV|A Chain A, Gamma-Adaptin Appendage Domain From Clathrin Adaptor Ap1, L762e Mutant Length = 120 Back     alignment and structure
>pdb|1P4U|A Chain A, Crystal Structure Of Gga3 Gae Domain In Complex With Rabaptin-5 Peptide Length = 153 Back     alignment and structure
>pdb|1OM9|A Chain A, Structure Of The Gga1-Appendage In Complex With The P56 Binding Peptide Length = 154 Back     alignment and structure
>pdb|1NA8|A Chain A, Crystal Structure Of Adp-Ribosylation Factor Binding Protein Gga1 Length = 154 Back     alignment and structure
>pdb|2DWX|A Chain A, Co-Crystal Structure Analysis Of Gga1-Gae With The Wnsf Motif Length = 133 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query812
1w63_A618 Adapter-related protein complex 1 gamma 1 subunit; 0.0
2vgl_A621 Adaptor protein complex AP-2, alpha 2 subunit; cyt 1e-164
2vgl_B591 AP-2 complex subunit beta-1; cytoplasmic vesicle, 1e-114
3tjz_B355 Coatomer subunit gamma; protein trafficking, golgi 3e-51
1iu1_A146 Gamma1-adaptin; coated PITS, endocytosis; 1.80A {H 7e-41
3zy7_A122 AP-1 complex subunit gamma-1; endocytosis, protein 6e-40
1gyu_A140 Adapter-related protein complex 1 gamma 1 subunit; 4e-39
2e9g_A131 AP-1 complex subunit gamma-2; beta-sandwich, immun 1e-38
1p4u_A153 ADP-ribosylation factor binding protein GGA3; prot 4e-34
3mnm_A123 ADP-ribosylation factor-binding protein GGA2; IG-l 1e-33
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-13
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-10
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-09
2db0_A253 253AA long hypothetical protein; heat repeats, hel 6e-07
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Length = 618 Back     alignment and structure
 Score =  570 bits (1470), Expect = 0.0
 Identities = 275/597 (46%), Positives = 400/597 (67%), Gaps = 58/597 (9%)

Query: 3   PFSSGTRLRDMIRSIRACKTAAEERAVVRKECAAIRAAINENDQDYRHRNLAKLMFIHML 62
              +  RLR++IR+IR  +T AEER +++KECAAIR++  E D  YR RN+AKL+++HML
Sbjct: 5   SMPAPIRLRELIRTIRTARTQAEEREMIQKECAAIRSSFREEDNTYRCRNVAKLLYMHML 64

Query: 63  GYPTHFGQMECLKSIASAGFPEKRIGYLGLMLLLDERQEVLMLVTNSLKQDLNHTNQYIV 122
           GYP HFGQ+ECLK IAS  F +KRIGYLG MLLLDERQ+V +L+TN +K DLNH+ Q++ 
Sbjct: 65  GYPAHFGQLECLKLIASQKFTDKRIGYLGAMLLLDERQDVHLLMTNCIKNDLNHSTQFVQ 124

Query: 123 GLALCALGNICSAEMARDLAPEVERLLQFRDPNIRKK------------PKCLDGLVKTL 170
           GLALC LG + S+EM RDLA EVE+LL+  +  +RKK            P+ ++  +   
Sbjct: 125 GLALCTLGCMGSSEMCRDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELMEMFLPAT 184

Query: 171 RD--------------------------------------------VVNSPYAPEYDIAG 186
           ++                                            ++ S Y+PE+D++G
Sbjct: 185 KNLLNEKNHGVLHTSVVLLTEMCERSPDMLAHFRKLVPQLVRILKNLIMSGYSPEHDVSG 244

Query: 187 ITDPFLHIRLLKLLHVLGQGDADASDCMNDILAQVATKTESNKNAGNAILYECVETIMSI 246
           I+DPFL +R+L+LL +LG+ D D+S+ MNDILAQVAT TE++KN GNAILYE V TIM I
Sbjct: 245 ISDPFLQVRILRLLRILGRNDDDSSEAMNDILAQVATNTETSKNVGNAILYETVLTIMDI 304

Query: 247 EDNGGLRVLAINILGRFLSNRDNNIRYVALNMLMKAITVDAQAVQRHRATILECVKDLDA 306
           +   GLRVLAINILGRFL N D NIRYVAL  L+K +  D  AVQRHR+TI++C+KDLD 
Sbjct: 305 KSESGLRVLAINILGRFLLNNDKNIRYVALTSLLKTVQTDHNAVQRHRSTIVDCLKDLDV 364

Query: 307 SIRKRALELVYLLVNESNVKPLTKELIDYLEISDQEFKGDLTAKICSMVEKFSPDKIWYI 366
           SI++RA+EL + LVN +N++ + KEL+ +L+  + EFK D  + I    EK++P K W+I
Sbjct: 365 SIKRRAMELSFALVNGNNIRGMMKELLYFLDSCEPEFKADCASGIFLAAEKYAPSKRWHI 424

Query: 367 DQMLKVLSEAGNFVKDEVWHALIVVISNASDLHGYTVRALYRAVQTSIEQESLVRVAIWC 426
           D +++VL+ AG++V+D+    LI +I+N+ ++H YTV+ LY+A+     Q+ LV+VA WC
Sbjct: 425 DTIMRVLTTAGSYVRDDAVPNLIQLITNSVEMHAYTVQRLYKAILGDYSQQPLVQVAAWC 484

Query: 427 IGEYGDMLVNNVGVLNIEDPITVTESDAVDVVEIAIKHHSSDITTKAMAMVALLKLSSRF 486
           IGEYGD+LV+       E+PI VTE + +D++E  +  + S   T+  A+ A++KLS+RF
Sbjct: 485 IGEYGDLLVSGQCEE--EEPIQVTEDEVLDILESVLISNMSTSVTRGYALTAIMKLSTRF 542

Query: 487 PSCSERIRDIIVQNKGSLVLELQQRSIEFNSIVEKHQNIRSTLVERMPVLDEATFSG 543
                RI+ ++     S+ +ELQQR++E+N++ +K+ ++RS L+ERMPV+++ T +G
Sbjct: 543 TCTVNRIKKVVSIYGSSIDVELQQRAVEYNALFKKYDHMRSALLERMPVMEKVTTNG 599
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A Length = 621 Back     alignment and structure
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B Length = 591 Back     alignment and structure
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} Length = 355 Back     alignment and structure
>1iu1_A Gamma1-adaptin; coated PITS, endocytosis; 1.80A {Homo sapiens} SCOP: b.1.10.2 Length = 146 Back     alignment and structure
>3zy7_A AP-1 complex subunit gamma-1; endocytosis, protein design, computational design; 1.09A {Mus musculus} PDB: 2a7b_A 1gyv_A 1gyw_A Length = 122 Back     alignment and structure
>1gyu_A Adapter-related protein complex 1 gamma 1 subunit; clathrin, golgi, adaptin, endocytosis, adaptor; 1.81A {Mus musculus} SCOP: b.1.10.2 Length = 140 Back     alignment and structure
>2e9g_A AP-1 complex subunit gamma-2; beta-sandwich, immunoglobulin-like fold, adaptin, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 131 Back     alignment and structure
>1p4u_A ADP-ribosylation factor binding protein GGA3; protein transport; 2.20A {Homo sapiens} SCOP: b.1.10.2 PDB: 1om9_A 1na8_A 2dwy_A 2dwx_A Length = 153 Back     alignment and structure
>3mnm_A ADP-ribosylation factor-binding protein GGA2; IG-like, beta sandwich, protein transport; HET: MLY; 1.73A {Saccharomyces cerevisiae} Length = 123 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query812
2vgl_A621 Adaptor protein complex AP-2, alpha 2 subunit; cyt 100.0
1w63_A618 Adapter-related protein complex 1 gamma 1 subunit; 100.0
2vgl_B591 AP-2 complex subunit beta-1; cytoplasmic vesicle, 100.0
3tjz_B355 Coatomer subunit gamma; protein trafficking, golgi 100.0
1iu1_A146 Gamma1-adaptin; coated PITS, endocytosis; 1.80A {H 99.98
3zy7_A122 AP-1 complex subunit gamma-1; endocytosis, protein 99.97
2e9g_A131 AP-1 complex subunit gamma-2; beta-sandwich, immun 99.97
1gyu_A140 Adapter-related protein complex 1 gamma 1 subunit; 99.97
3mnm_A123 ADP-ribosylation factor-binding protein GGA2; IG-l 99.96
1p4u_A153 ADP-ribosylation factor binding protein GGA3; prot 99.96
1b3u_A588 Protein (protein phosphatase PP2A); scaffold prote 99.24
2vgl_B591 AP-2 complex subunit beta-1; cytoplasmic vesicle, 99.23
4fdd_A852 Transportin-1; heat repeats, karyopherin, nuclear 99.1
1b3u_A588 Protein (protein phosphatase PP2A); scaffold prote 99.07
4fdd_A852 Transportin-1; heat repeats, karyopherin, nuclear 99.07
1w63_A618 Adapter-related protein complex 1 gamma 1 subunit; 99.04
2z6g_A780 B-catenin; FULL-length, beta-catenin, cell adhesio 98.93
2jdq_A450 Importin alpha-1 subunit; transport, PB2 subunit, 98.92
1wa5_B530 Importin alpha subunit; nuclear transport/complex, 98.85
2bpt_A861 Importin beta-1 subunit; nuclear transport, nucleo 98.84
2jdq_A450 Importin alpha-1 subunit; transport, PB2 subunit, 98.83
2bpt_A861 Importin beta-1 subunit; nuclear transport, nucleo 98.82
1oyz_A280 Hypothetical protein YIBA; structural genomics, PS 98.79
1wa5_B530 Importin alpha subunit; nuclear transport/complex, 98.79
4b8j_A528 Importin subunit alpha-1A; transport protein, nucl 98.77
1qgr_A876 Protein (importin beta subunit); transport recepto 98.77
4b8j_A528 Importin subunit alpha-1A; transport protein, nucl 98.75
1jdh_A529 Beta-catenin; beta-catenin, protein-protein comple 98.7
2z6h_A644 Catenin beta-1, beta-catenin; C-terminal domain, a 98.7
2z6g_A780 B-catenin; FULL-length, beta-catenin, cell adhesio 98.68
1u6g_C 1230 TIP120 protein, CAND1; cullin repeat, heat repeat, 98.67
1jdh_A529 Beta-catenin; beta-catenin, protein-protein comple 98.63
1qgr_A876 Protein (importin beta subunit); transport recepto 98.63
2z6h_A644 Catenin beta-1, beta-catenin; C-terminal domain, a 98.63
3now_A810 UNC-45 protein, SD10334P; armadillo repeat, HSP90, 98.62
1ibr_B462 P95, importin beta-1 subunit, nuclear factor; smal 98.49
2vgl_A621 Adaptor protein complex AP-2, alpha 2 subunit; cyt 98.48
1u6g_C 1230 TIP120 protein, CAND1; cullin repeat, heat repeat, 98.46
3now_A810 UNC-45 protein, SD10334P; armadillo repeat, HSP90, 98.45
3ul1_B510 Importin subunit alpha-2; arm repeat, armadillo re 98.36
3ul1_B510 Importin subunit alpha-2; arm repeat, armadillo re 98.35
1ibr_B462 P95, importin beta-1 subunit, nuclear factor; smal 98.35
4hxt_A252 De novo protein OR329; structural genomics, PSI-bi 98.32
1oyz_A280 Hypothetical protein YIBA; structural genomics, PS 98.29
3tpo_A529 Importin subunit alpha-2; nuclear import, protein 98.23
3ltm_A211 Alpha-REP4; protein engineering, heat-like repeat, 98.22
3tpo_A529 Importin subunit alpha-2; nuclear import, protein 98.18
4hxt_A252 De novo protein OR329; structural genomics, PSI-bi 98.18
4db6_A210 Armadillo repeat protein; solenoid repeat, armadil 98.09
3ltm_A211 Alpha-REP4; protein engineering, heat-like repeat, 98.09
4db8_A252 Armadillo-repeat protein; solenoid repeat, de novo 98.05
4db8_A252 Armadillo-repeat protein; solenoid repeat, de novo 98.05
3ltj_A201 Alpharep-4; protein engineering, heat-like repeat, 98.05
3ltj_A201 Alpharep-4; protein engineering, heat-like repeat, 98.02
4db6_A210 Armadillo repeat protein; solenoid repeat, armadil 97.54
3opb_A778 SWI5-dependent HO expression protein 4; heat and a 97.51
3b2a_A265 TON_1937, putative uncharacterized protein; heat-r 97.45
3tjz_B355 Coatomer subunit gamma; protein trafficking, golgi 97.41
1xm9_A457 Plakophilin 1; armadillo repeat, cell adhesion; 2. 97.29
2qk2_A242 LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 97.25
2db0_A253 253AA long hypothetical protein; heat repeats, hel 97.19
1xm9_A457 Plakophilin 1; armadillo repeat, cell adhesion; 2. 97.15
3l6x_A584 Catenin delta-1; catenin, armadillo, ARM, JMD, CE 96.9
3nmw_A354 APC variant protein; ARMADIILO repeats domain, cel 96.79
2x19_B963 Importin-13; nuclear transport, protein transport; 96.79
3l6x_A584 Catenin delta-1; catenin, armadillo, ARM, JMD, CE 96.67
1xqr_A296 HSPBP1 protein; armadillo repeat, superhelical twi 96.67
2db0_A253 253AA long hypothetical protein; heat repeats, hel 96.65
3nmz_A458 APC variant protein; protein-protein complex, arma 96.56
2qk2_A242 LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 96.51
3hs8_A 273 Adaptor protein complex AP-2, alpha 2 subunit; ada 96.45
1wa5_C960 Importin alpha RE-exporter; nuclear transport/comp 96.42
1xqr_A296 HSPBP1 protein; armadillo repeat, superhelical twi 96.39
3nmw_A354 APC variant protein; ARMADIILO repeats domain, cel 96.29
1wa5_C 960 Importin alpha RE-exporter; nuclear transport/comp 96.27
2qk1_A249 Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h 96.27
2qk1_A249 Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h 96.2
1te4_A131 Conserved protein MTH187; methanobacterium thermoa 96.18
3grl_A651 General vesicular transport factor P115; vesicle t 96.15
3b2a_A265 TON_1937, putative uncharacterized protein; heat-r 96.11
4ady_A963 RPN2, 26S proteasome regulatory subunit RPN2; prot 96.03
1kyf_A 247 Alpha-adaptin C; protein-peptide complex, endocyto 95.97
2x1g_F971 Cadmus; transport protein, developmental protein, 95.89
3ibv_A 980 Exportin-T; karyopherin, heat repeat, cytoplasm, n 95.31
2x1g_F971 Cadmus; transport protein, developmental protein, 95.02
4ady_A963 RPN2, 26S proteasome regulatory subunit RPN2; prot 94.86
1ho8_A480 Vacuolar ATP synthase subunit H; heat repeat, hydr 94.65
1te4_A131 Conserved protein MTH187; methanobacterium thermoa 94.6
3opb_A778 SWI5-dependent HO expression protein 4; heat and a 94.43
3nmz_A458 APC variant protein; protein-protein complex, arma 94.19
3u0r_A507 Apoptosis inhibitor 5; heat repeat, armadillo repe 94.13
3m1i_C 1049 Exportin-1; heat repeat, GTP-binding, nucleotide-b 93.93
2of3_A266 ZYG-9; multifunctional macromolecule, kinetochore, 93.58
2x19_B963 Importin-13; nuclear transport, protein transport; 93.01
4ffb_C278 Protein STU2; tubulin fold, heat repeats, cytoskel 91.28
3gs3_A257 Symplekin, LD45768P; helix-turn-helix heat repeat 91.08
3o2t_A386 Symplekin; heat repeat, scaffold, protein binding; 90.69
3a6p_A 1204 Exportin-5; exportin-5, RANGTP, nuclearexport, imp 90.47
3o2t_A386 Symplekin; heat repeat, scaffold, protein binding; 89.25
3s4w_B 1323 Protein FACD2, fanconi anemia group D2 protein hom 88.75
3m1i_C 1049 Exportin-1; heat repeat, GTP-binding, nucleotide-b 87.97
2g30_A 258 AP-2 complex subunit beta-1; alpha-helical ARH pep 87.2
3tt9_A233 Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} 86.9
3u0r_A507 Apoptosis inhibitor 5; heat repeat, armadillo repe 86.86
3tt9_A233 Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} 86.18
3gs3_A257 Symplekin, LD45768P; helix-turn-helix heat repeat 85.78
3dad_A339 FH1/FH2 domain-containing protein 1; formin, FHOD1 85.1
2of3_A266 ZYG-9; multifunctional macromolecule, kinetochore, 84.79
3ibv_A 980 Exportin-T; karyopherin, heat repeat, cytoplasm, n 84.16
3grl_A651 General vesicular transport factor P115; vesicle t 83.81
3gjx_A 1073 Exportin-1; transport, cytoplasm, nucleus, RNA-bin 82.35
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A Back     alignment and structure
Probab=100.00  E-value=1.1e-93  Score=849.00  Aligned_cols=522  Identities=29%  Similarity=0.553  Sum_probs=476.9

Q ss_pred             CCcchHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHccC---ChHHHHHHHHHHHHHHHcCCCCCChhHHHHHhhccCC
Q 045023            5 SSGTRLRDMIRSIRACKTAAEERAVVRKECAAIRAAINEN---DQDYRHRNLAKLMFIHMLGYPTHFGQMECLKSIASAG   81 (812)
Q Consensus         5 m~~~~L~~fI~~vr~~~t~~eEr~~i~~E~a~Ir~~l~~~---~~~~r~~~l~KLiyl~~lG~~~~~~~~evikli~s~~   81 (812)
                      |+|  |++||++||+|||+++|+++|++|+++||+.|+++   +.++|+++++|+||++|+|||++|||++|+++++|++
T Consensus        10 ~~~--l~~~I~~ir~~~~~~~e~~~i~~E~~~ir~~~~~~~~~~~~~k~~~l~Kli~l~~~G~d~s~~~~~vvkl~~s~~   87 (621)
T 2vgl_A           10 MRG--LAVFISDIRNCKSKEAEIKRINKELANIRSKFKGDKALDGYSKKKYVCKLLFIFLLGHDIDFGHMEAVNLLSSNR   87 (621)
T ss_dssp             CHH--HHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHHHHHHHHHHHSCCCCSCHHHHHHGGGCSC
T ss_pred             chh--HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCCCchhHHHHHHHhcCCC
Confidence            455  99999999999999999999999999999999953   7899999999999999999999999999999999999


Q ss_pred             CCchhHHHHHHHHhcccchhHHHHHHHHHHhhcCCCCHhHHHHHHHHHhccCchhhHHHHHHHHHHhc--cCCCcceecc
Q 045023           82 FPEKRIGYLGLMLLLDERQEVLMLVTNSLKQDLNHTNQYIVGLALCALGNICSAEMARDLAPEVERLL--QFRDPNIRKK  159 (812)
Q Consensus        82 ~~~KRlgYL~~~~ll~~~~el~~L~~Nsl~kDL~s~n~~i~~lAL~~Ls~I~~~e~~~~l~~~V~~ll--~~~~pyVRKk  159 (812)
                      |+.||+||||++.++++++|+++|+||+|+|||+|+||++||+|||+||+|++++|++++.+.|.+++  .|++|||||+
T Consensus        88 ~~~Krl~YL~l~~~~~~~~e~~~L~iN~l~kDl~~~n~~ir~lALr~L~~i~~~e~~~~l~~~v~~~l~~~d~~~~VRK~  167 (621)
T 2vgl_A           88 YTEKQIGYLFISVLVNSNSELIRLINNAIKNDLASRNPTFMGLALHCIANVGSREMAEAFAGEIPKILVAGDTMDSVKQS  167 (621)
T ss_dssp             HHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHCCHHHHHHHTTHHHHHHHCSSSCHHHHHH
T ss_pred             HHHHHHHHHHHHHHccCCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHhCCCCCHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999  9999999999


Q ss_pred             C-------------------------------------------------------CCchhHHHHHHHHhcCC-CC-Ccc
Q 045023          160 P-------------------------------------------------------KCLDGLVKTLRDVVNSP-YA-PEY  182 (812)
Q Consensus       160 A-------------------------------------------------------~~v~~lv~~L~~L~~~~-~~-pe~  182 (812)
                      |                                                       .++|.+++.|++++..+ ++ +||
T Consensus       168 A~~al~kl~~~~p~~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~  247 (621)
T 2vgl_A          168 AALCLLRLYRTSPDLVPMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPEEFKTSVSLAVSRLSRIVTSASTDLQDY  247 (621)
T ss_dssp             HHHHHHHHHHHCGGGCCCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHHHHTTHHHHHHHHHHHHHHCCSSSCSTT
T ss_pred             HHHHHHHHHHhChhhcCchhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHhCCCCCccch
Confidence            9                                                       12444556666766655 43 899


Q ss_pred             ccccCCChhHHHHHHHHHHhcCCC-CchhhhHHHHHHHHHhhccc-c-------CCCCcchHHHHHHHHHHhcCCChhHH
Q 045023          183 DIAGITDPFLHIRLLKLLHVLGQG-DADASDCMNDILAQVATKTE-S-------NKNAGNAILYECVETIMSIEDNGGLR  253 (812)
Q Consensus       183 ~~~~~~dpwlqv~lL~lL~~l~~~-~~~~~~~l~diL~~v~~~~~-~-------~kn~~~aVl~e~v~~i~~i~~~~~L~  253 (812)
                      +|+|+++||+|+++|++|+.|++. +++..+.+.++|.+++++++ +       .+|+++||+|||+++|+.+.++++++
T Consensus       248 ~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~~~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~~~~~~~  327 (621)
T 2vgl_A          248 TYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTECLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHDSEPNLL  327 (621)
T ss_dssp             EETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHHHHHHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHCCCHHHH
T ss_pred             hhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhccCcccccccccchHHHHHHHHHHHHHhcCCcHHHH
Confidence            999999999999999999999985 57888889999998886532 1       23668899999999999999989999


Q ss_pred             HHHHHHHHHhhcCCCcchHHHHHHHHHHHHhhCH--HHHHHhHhhhccccc-ccCHhHHHHHHHHHHHhcCCCCHHHHHH
Q 045023          254 VLAINILGRFLSNRDNNIRYVALNMLMKAITVDA--QAVQRHRATILECVK-DLDASIRKRALELVYLLVNESNVKPLTK  330 (812)
Q Consensus       254 ~l~i~~L~~fL~~~d~niryvaL~~L~~l~~~~p--~~v~~h~~~i~~cL~-d~D~sIr~~aLell~~l~n~~Nv~~Iv~  330 (812)
                      ..+++.|++||.++|+|+||+||++|.+++..+|  .++++|+..|+.||+ |+|++||++||++++.|+|++|++.|++
T Consensus       328 ~~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~~~~~~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~~~Nv~~Iv~  407 (621)
T 2vgl_A          328 VRACNQLGQFLQHRETNLRYLALESMCTLASSEFSHEAVKTHIETVINALKTERDVSVRQRAVDLLYAMCDRSNAQQIVA  407 (621)
T ss_dssp             HHHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTTHHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHHcChhhHHHHHH
Confidence            9999999999999999999999999999999875  899999999999999 9999999999999999999999999999


Q ss_pred             HHHHHhhhcCHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHhhcCccchHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 045023          331 ELIDYLEISDQEFKGDLTAKICSMVEKFSPDKIWYIDQMLKVLSEAGNFVKDEVWHALIVVISNASDLHGYTVRALYRAV  410 (812)
Q Consensus       331 eLl~yl~~~d~~~~~~li~~I~~la~k~~~~~~w~vd~ll~lL~~~g~~v~~e~i~~i~~li~~~p~l~~~~v~~L~~~l  410 (812)
                      ||++|+...|.+||.+++.+|+.+|+||+++.+||++++++++..+|+|+.+|+|..+++++.++|++|.|++.+|++.+
T Consensus       408 eL~~yl~~~d~~~~~~~v~~I~~la~k~~~~~~~~v~~Ll~ll~~~~~~v~~ev~~~l~~ii~~~~~~~~~~~~~l~~~l  487 (621)
T 2vgl_A          408 EMLSYLETADYSIREEIVLKVAILAEKYAVDYTWYVDTILNLIRIAGDYVSEEVWYRVIQIVINRDDVQGYAAKTVFEAL  487 (621)
T ss_dssp             HHHHHHHHCCHHHHHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHGGGSCSHHHHHHHHHHGGGCSCHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhhcccchHHHHHHHHHHHhCChhHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhccchHHHHHHHHHhhhhcccccccCccccccCCCCccChhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHccCCCCh
Q 045023          411 QTSIEQESLVRVAIWCIGEYGDMLVNNVGVLNIEDPITVTESDAVDVVEIAIKHHSSDITTKAMAMVALLKLSSRFPSCS  490 (812)
Q Consensus       411 ~~~~~~~~l~~~~~WiiGEY~~~l~~~~~~~~~~~~~~v~~~~vi~~l~~~l~~~~~~~~vk~~iLtAl~KL~~r~p~~~  490 (812)
                      .+....+.++++++|++||||+.+.+.++         +++.++++.+..-+  ..++..||.++|||++|++.++|+..
T Consensus       488 ~~~~~~~~li~~~~wilGEy~~~~~~~~~---------~~p~~~l~~l~~~~--~~~~~~v~~~~Lta~~Kl~~~~p~~~  556 (621)
T 2vgl_A          488 QAPACHENLVKVGGYILGEFGNLIAGDPR---------SSPLIQFNLLHSKF--HLCSVPTRALLLSTYIKFVNLFPEVK  556 (621)
T ss_dssp             TSSSCCHHHHHHHHHHHHHHTHHHHSSTT---------SCHHHHHHHHHHHH--TTSCHHHHHHHHHHHHHHHHHCGGGH
T ss_pred             cCccchHHHHHHHHHHhcchHHHhcccCC---------CCHHHHHHHHHHHh--ccCCHHHHHHHHHHHHHHHHHChHHH
Confidence            97666778899999999999999876432         12335555443222  35689999999999999999999999


Q ss_pred             HHHHHHHHHhhC--CCChHHHHHHHHHHHHhccC-HHHHHHhhhcCCCCccc
Q 045023          491 ERIRDIIVQNKG--SLVLELQQRSIEFNSIVEKH-QNIRSTLVERMPVLDEA  539 (812)
Q Consensus       491 ~~i~~ll~~~~~--s~~~evqqRA~ey~~Ll~~~-~~~~~~ll~~mP~~~~~  539 (812)
                      +.+.++|+.+++  |.|+||||||+||++||+.. +++++.++++||+|+++
T Consensus       557 ~~i~~~l~~~~~~~~~d~evrdRA~~y~~Ll~~~~~~~~~~vl~~~P~~~~~  608 (621)
T 2vgl_A          557 ATIQDVLRSDSQLKNADVELQQRAVEYLRLSTVASTDILATVLEEMPPFPER  608 (621)
T ss_dssp             HHHHHHHSSHHHHSCSSHHHHHHHHHHHHHHHSSCSTTTTTTSSSCCCCCCC
T ss_pred             HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHccCHHHHHHHHhhcCCCCCCc
Confidence            999999999998  99999999999999999743 58999999999999876
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Back     alignment and structure
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B Back     alignment and structure
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} Back     alignment and structure
>1iu1_A Gamma1-adaptin; coated PITS, endocytosis; 1.80A {Homo sapiens} SCOP: b.1.10.2 Back     alignment and structure
>3zy7_A AP-1 complex subunit gamma-1; endocytosis, protein design, computational design; 1.09A {Mus musculus} PDB: 2a7b_A 1gyv_A 1gyw_A Back     alignment and structure
>2e9g_A AP-1 complex subunit gamma-2; beta-sandwich, immunoglobulin-like fold, adaptin, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1gyu_A Adapter-related protein complex 1 gamma 1 subunit; clathrin, golgi, adaptin, endocytosis, adaptor; 1.81A {Mus musculus} SCOP: b.1.10.2 Back     alignment and structure
>3mnm_A ADP-ribosylation factor-binding protein GGA2; IG-like, beta sandwich, protein transport; HET: MLY; 1.73A {Saccharomyces cerevisiae} Back     alignment and structure
>1p4u_A ADP-ribosylation factor binding protein GGA3; protein transport; 2.20A {Homo sapiens} SCOP: b.1.10.2 PDB: 1om9_A 1na8_A 2dwy_A 2dwx_A Back     alignment and structure
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Back     alignment and structure
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B Back     alignment and structure
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Back     alignment and structure
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Back     alignment and structure
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Back     alignment and structure
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Back     alignment and structure
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Back     alignment and structure
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Back     alignment and structure
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Back     alignment and structure
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Back     alignment and structure
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Back     alignment and structure
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Back     alignment and structure
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Back     alignment and structure
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Back     alignment and structure
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A Back     alignment and structure
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Back     alignment and structure
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A Back     alignment and structure
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Back     alignment and structure
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Back     alignment and structure
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Back     alignment and structure
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Back     alignment and structure
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Back     alignment and structure
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Back     alignment and structure
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Back     alignment and structure
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Back     alignment and structure
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Back     alignment and structure
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A Back     alignment and structure
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Back     alignment and structure
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Back     alignment and structure
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ... Back     alignment and structure
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ... Back     alignment and structure
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Back     alignment and structure
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} Back     alignment and structure
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Back     alignment and structure
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B Back     alignment and structure
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Back     alignment and structure
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B Back     alignment and structure
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} Back     alignment and structure
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Back     alignment and structure
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Back     alignment and structure
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Back     alignment and structure
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Back     alignment and structure
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Back     alignment and structure
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Back     alignment and structure
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Back     alignment and structure
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Back     alignment and structure
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus} Back     alignment and structure
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} Back     alignment and structure
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Back     alignment and structure
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Back     alignment and structure
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Back     alignment and structure
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Back     alignment and structure
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Back     alignment and structure
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Back     alignment and structure
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B Back     alignment and structure
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Back     alignment and structure
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Back     alignment and structure
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Back     alignment and structure
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Back     alignment and structure
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Back     alignment and structure
>3hs8_A Adaptor protein complex AP-2, alpha 2 subunit; adaptor complex AP-2, endocytosis, cell membrane, coated PIT binding, membrane, disease mutation; 1.90A {Mus musculus} Back     alignment and structure
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A Back     alignment and structure
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Back     alignment and structure
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Back     alignment and structure
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A Back     alignment and structure
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Back     alignment and structure
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Back     alignment and structure
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Back     alignment and structure
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A Back     alignment and structure
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus} Back     alignment and structure
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N Back     alignment and structure
>1kyf_A Alpha-adaptin C; protein-peptide complex, endocytosis, endocytosis/exocytosis complex; 1.22A {Mus musculus} SCOP: b.1.10.1 d.105.1.1 PDB: 1ky7_A 1kyd_A 1ky6_A 1kyu_A 1qtp_A 1qts_A 2vj0_A 1w80_A 1b9k_A Back     alignment and structure
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster} Back     alignment and structure
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T* Back     alignment and structure
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster} Back     alignment and structure
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N Back     alignment and structure
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9 Back     alignment and structure
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Back     alignment and structure
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Back     alignment and structure
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Back     alignment and structure
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A Back     alignment and structure
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B Back     alignment and structure
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} Back     alignment and structure
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B Back     alignment and structure
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae} Back     alignment and structure
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster} Back     alignment and structure
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A* Back     alignment and structure
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens} Back     alignment and structure
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A* Back     alignment and structure
>3s4w_B Protein FACD2, fanconi anemia group D2 protein homolog; DNA repair, DNA binding protein; 3.41A {Mus musculus} Back     alignment and structure
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B Back     alignment and structure
>2g30_A AP-2 complex subunit beta-1; alpha-helical ARH peptide, platform domain, sandwich domain, endocytosis, adaptor, endocytosis/exocytosis complex; 1.60A {Homo sapiens} SCOP: b.1.10.1 d.105.1.1 PDB: 1e42_A 3h1z_A 3hs9_A 2iv9_A 2iv8_A Back     alignment and structure
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Back     alignment and structure
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A Back     alignment and structure
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Back     alignment and structure
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster} Back     alignment and structure
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens} Back     alignment and structure
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} Back     alignment and structure
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T* Back     alignment and structure
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A Back     alignment and structure
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 812
d2vgla_584 a.118.1.10 (A:) Adaptin alpha C subunit N-terminal 1e-124
d2vglb_579 a.118.1.10 (B:) Adaptin beta subunit N-terminal fr 8e-83
d1gyva_120 b.1.10.2 (A:) Gamma1-adaptin domain {Human (Homo s 5e-42
d1p4ua_145 b.1.10.2 (A:) ADP-ribosylation factor binding prot 1e-37
d2dwya1129 b.1.10.2 (A:511-639) ADP-ribosylation factor bindi 7e-35
d1u6gc_ 1207 a.118.1.2 (C:) Cullin-associated NEDD8-dissociated 2e-04
d1u6gc_1207 a.118.1.2 (C:) Cullin-associated NEDD8-dissociated 0.002
d2bpta1 861 a.118.1.1 (A:1-861) Importin beta {Baker's yeast ( 8e-04
>d1gyva_ b.1.10.2 (A:) Gamma1-adaptin domain {Human (Homo sapiens) [TaxId: 9606]} Length = 120 Back     information, alignment and structure
>d1p4ua_ b.1.10.2 (A:) ADP-ribosylation factor binding protein Gga3 domain {Human (Homo sapiens) [TaxId: 9606]} Length = 145 Back     information, alignment and structure
>d2dwya1 b.1.10.2 (A:511-639) ADP-ribosylation factor binding protein Gga1 domain {Human (Homo sapiens) [TaxId: 9606]} Length = 129 Back     information, alignment and structure
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207 Back     information, alignment and structure
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207 Back     information, alignment and structure
>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 861 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query812
d2vgla_584 Adaptin alpha C subunit N-terminal fragment {Mouse 100.0
d2vglb_579 Adaptin beta subunit N-terminal fragment {Human (H 100.0
d1gyva_120 Gamma1-adaptin domain {Human (Homo sapiens) [TaxId 99.98
d2dwya1129 ADP-ribosylation factor binding protein Gga1 domai 99.97
d1p4ua_145 ADP-ribosylation factor binding protein Gga3 domai 99.96
d1b3ua_588 Constant regulatory domain of protein phosphatase 99.14
d1b3ua_588 Constant regulatory domain of protein phosphatase 98.85
d2vglb_579 Adaptin beta subunit N-terminal fragment {Human (H 98.84
d1q1sc_434 Importin alpha {Mouse (Mus musculus) [TaxId: 10090 98.6
d2bpta1861 Importin beta {Baker's yeast (Saccharomyces cerevi 98.4
d1qbkb_888 Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 98.4
d1q1sc_434 Importin alpha {Mouse (Mus musculus) [TaxId: 10090 98.4
d1jdha_529 beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} 98.39
d1qbkb_888 Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 98.34
d1ibrb_458 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 98.32
d1wa5b_503 Karyopherin alpha {Baker's yeast (Saccharomyces ce 98.27
d2vgla_584 Adaptin alpha C subunit N-terminal fragment {Mouse 98.17
d1oyza_276 Hypothetical protein YibA {Escherichia coli [TaxId 98.17
d1wa5b_503 Karyopherin alpha {Baker's yeast (Saccharomyces ce 98.07
d1u6gc_ 1207 Cullin-associated NEDD8-dissociated protein 1 (Tip 98.05
d1qgra_876 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 97.88
d1u6gc_ 1207 Cullin-associated NEDD8-dissociated protein 1 (Tip 97.87
d1jdha_529 beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} 97.87
d2bpta1861 Importin beta {Baker's yeast (Saccharomyces cerevi 97.86
d1oyza_276 Hypothetical protein YibA {Escherichia coli [TaxId 97.77
d1qgra_876 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 97.6
d1xm9a1457 Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} 97.37
d1ibrb_458 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 96.88
d1xqra1264 Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi 96.83
d1xqra1264 Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi 96.74
d1kyfa1133 Alpha-adaptin AP2 ear domain, N-terminal subdomain 96.59
d1te4a_111 MTH187 {Archaeon Methanobacterium thermoautotrophi 96.11
d1te4a_111 MTH187 {Archaeon Methanobacterium thermoautotrophi 95.42
d1xm9a1457 Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} 95.21
d1ho8a_477 Regulatory subunit H of the V-type ATPase {Baker's 94.77
d1lsha1336 Lipovitellin-phosvitin complex, superhelical domai 94.76
d1w8oa1103 Sialidase, "linker" domain {Micromonospora viridif 93.81
d1wa5c_959 Exportin Cse1p {Baker's yeast (Saccharomyces cerev 90.12
d1lsha1336 Lipovitellin-phosvitin complex, superhelical domai 88.9
d1e42a1120 Beta2-adaptin AP2 ear domain, N-terminal subdomain 85.83
>d1gyva_ b.1.10.2 (A:) Gamma1-adaptin domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2dwya1 b.1.10.2 (A:511-639) ADP-ribosylation factor binding protein Gga1 domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1p4ua_ b.1.10.2 (A:) ADP-ribosylation factor binding protein Gga3 domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1kyfa1 b.1.10.1 (A:692-824) Alpha-adaptin AP2 ear domain, N-terminal subdomain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Back     information, alignment and structure
>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Back     information, alignment and structure
>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]} Back     information, alignment and structure
>d1w8oa1 b.1.18.2 (A:403-505) Sialidase, "linker" domain {Micromonospora viridifaciens [TaxId: 1881]} Back     information, alignment and structure
>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]} Back     information, alignment and structure
>d1e42a1 b.1.10.1 (A:705-824) Beta2-adaptin AP2 ear domain, N-terminal subdomain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure