Citrus Sinensis ID: 045024
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 1173 | 2.2.26 [Sep-21-2011] | |||||||
| Q6DFB8 | 1564 | Tetratricopeptide repeat | N/A | no | 0.370 | 0.278 | 0.286 | 8e-43 | |
| Q6PGP7 | 1564 | Tetratricopeptide repeat | yes | no | 0.375 | 0.281 | 0.284 | 3e-37 | |
| O94474 | 1389 | Superkiller protein 3 OS= | yes | no | 0.368 | 0.311 | 0.252 | 4e-20 | |
| P17883 | 1432 | Superkiller protein 3 OS= | yes | no | 0.338 | 0.277 | 0.218 | 1e-11 | |
| O18158 | 1151 | UDP-N-acetylglucosamine-- | yes | no | 0.319 | 0.325 | 0.236 | 2e-10 | |
| Q9M8Y0 | 977 | Probable UDP-N-acetylgluc | no | no | 0.174 | 0.209 | 0.216 | 7e-08 | |
| Q8CGY8 | 1046 | UDP-N-acetylglucosamine-- | no | no | 0.313 | 0.351 | 0.236 | 1e-06 | |
| P81436 | 1046 | UDP-N-acetylglucosamine-- | no | no | 0.313 | 0.351 | 0.236 | 1e-06 | |
| Q27HV0 | 1046 | UDP-N-acetylglucosamine-- | yes | no | 0.313 | 0.351 | 0.236 | 1e-06 | |
| O15294 | 1046 | UDP-N-acetylglucosamine-- | no | no | 0.313 | 0.351 | 0.236 | 1e-06 |
| >sp|Q6DFB8|TTC37_XENLA Tetratricopeptide repeat protein 37 OS=Xenopus laevis GN=ttc37 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 176 bits (447), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 137/478 (28%), Positives = 219/478 (45%), Gaps = 43/478 (8%)
Query: 9 LQLEDSLEANPDDPSLHLDLGLHLW----ENSESKEKAAEHFVIAAKLNPQNAVAFRYLG 64
+ L+ +LE P++ H LGL+ W E K KA F+ AAK++P + AF YLG
Sbjct: 441 ISLQYALERKPENAVYHYYLGLNYWFMSKETRRDKTKAVTQFLKAAKMDPFMSRAFYYLG 500
Query: 65 HYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSP- 123
HYY+ + D RA CY++A L D +G A +L G + + + ++++
Sbjct: 501 HYYSEVAGDKSRARGCYKKAFELDDSDGEAGAAAVDLSMELGDMDVALAILTSVTERADA 560
Query: 124 -RAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKS 182
A WA+ R G L + S++V L A+R P + WE LG AY G ++ A+KS
Sbjct: 561 GTAKWAWLRRGLFYLRVGQHSKSVSDLHAALRADPKDSNCWECLGEAYLSRGGYTTALKS 620
Query: 183 YGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLASGLLGLA 242
+ +A EL+ SI+ + + +I +LG +++ V ++Q L S E V A GL L LA
Sbjct: 621 FMKASELNPDSIYSVYKIASIKQILGTYKEAVNEYQQILMKSGEYVPALKGLGECHLMLA 680
Query: 243 KQCINLGAFRWGASLLEDACKVAEANTRLAGNMSCIWKLHGD------------IQLTYA 290
K ++ +E A + RL ++ C+WKL GD +++
Sbjct: 681 KSALSDFLDLKAVDAIEKAIEFLARAIRLRPDLLCLWKLLGDACTCIYAVTHSSVKVNVL 740
Query: 291 KCFPWAEERQSLEFDVETFSASIVSWKTTCLMAAISSKSSYQRALYLAPWQANIYTDIAI 350
+E Q L E +++ C Y RAL + AN++ D+ I
Sbjct: 741 GILLGNDEEQQLLNKPE-----VLALGGRC----------YGRALRIQS-TANLWCDLGI 784
Query: 351 T----SDLIYSLNEAYGHYQSAWHVSEKMALGALLLEGDNCQFWVTLGCLS-----NYNG 401
S + + S++ A+++E N QFW LG +S N
Sbjct: 785 NYYYQSQHLMGYDSLTNDASELLEKSQQCIKKAVMVESGNHQFWNALGVVSCSKGMGNNA 844
Query: 402 LKQHALIRGLQLDVSLADAWAHIGKLYGEVGEKKLARQAFDSARSIDPSLALPWAGMS 459
L QHA I+ + + + AW ++G LY G +L+ QAF A+S+DP W G +
Sbjct: 845 LAQHAFIKSIHCEQNNVAAWTNLGALYLMNGNIELSHQAFKVAQSLDPLYVRCWIGQA 902
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Xenopus laevis (taxid: 8355) |
| >sp|Q6PGP7|TTC37_HUMAN Tetratricopeptide repeat protein 37 OS=Homo sapiens GN=TTC37 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 158 bits (399), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 133/468 (28%), Positives = 211/468 (45%), Gaps = 27/468 (5%)
Query: 11 LEDSLEANPDDPSLHLDLGLHLW----ENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHY 66
+ +LE + + H LGL W E + K KA HF+ AA+L+ F YLGHY
Sbjct: 443 FQRALEKDTEVAEYHYQLGLTYWFMGEETRKDKTKALTHFLKAARLDTYMGKVFCYLGHY 502
Query: 67 YTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSP--R 124
Y D RA CY++A L D+ SG A +L + + + + K+
Sbjct: 503 YRDVVGDKNRARGCYRKAFELDDTDAESGAAAVDLSVELEDMEMALAILTTVTQKASAGT 562
Query: 125 AFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYG 184
A WA+ R G L + S+AV LQ A+R P + WE+LG AY G ++ A+KS+
Sbjct: 563 AKWAWLRRGLYYLKAGQHSQAVADLQAALRADPKDFNCWESLGEAYLSRGGYTTALKSFT 622
Query: 185 RAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLASGLLGLAKQ 244
+A EL+ SI+ + + I +LG +++ V Q+Q+ +K + V A GL L +AK
Sbjct: 623 KASELNPESIYSVFKVAAIQQILGKYKEAVAQYQMIIKKKEDYVPALKGLGECHLMMAKA 682
Query: 245 CINLGAFRWGASLLEDACKVAEANTRLAGNMSCIWKLHGDIQLTYAKCFPWAEERQSLEF 304
+ +E A + + ++SC+WKL GD P L
Sbjct: 683 ALVDYLDGKAVDYIEKALEYFTCALQHRADVSCLWKLAGDACTCLYAVAPSKVNVHVLGV 742
Query: 305 DVETFSASIVSWKTTCLMAAISSKSSYQRALYLAPWQANIYTDIAIT--------SDLIY 356
+ V K L Y RAL L +N + D+ I ++
Sbjct: 743 LLGQKEGKQVLKKNELLHLG---GRCYGRALKLMS-TSNTWCDLGINYYRQAQHLAETGS 798
Query: 357 SLNEAYGHYQSAWHVSEKMALGALLLEGDNCQFWVTLGCLSNYNG-----LKQHALIRGL 411
++N+ + + H +K A+ L+ +N +W LG ++ Y+G L QH I+ +
Sbjct: 799 NMNDLKELLEKSLHCLKK----AVRLDSNNHLYWNALGVVACYSGIGNYALAQHCFIKSI 854
Query: 412 QLDVSLADAWAHIGKLYGEVGEKKLARQAFDSARSIDPSLALPWAGMS 459
Q + A AW ++G LY + A +AF A+S+DPS + W G +
Sbjct: 855 QSEQINAVAWTNLGVLYLTNENIEQAHEAFKMAQSLDPSYLMCWIGQA 902
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Component of the SKI complex which is thought to be involved in exosome-mediated RNA decay and associates with transcriptionally active genes in a manner dependent on PAF1 complex (PAF1C). Homo sapiens (taxid: 9606) |
| >sp|O94474|SKI3_SCHPO Superkiller protein 3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ski3 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 101 bits (251), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 125/495 (25%), Positives = 203/495 (41%), Gaps = 63/495 (12%)
Query: 46 FVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHG 105
FV + + +P A A+ LG YY R D RA KC+Q+A L + EAL +
Sbjct: 564 FVSSLRKDPNYAPAYTSLGLYY-RDIHDMVRATKCFQKAFELDASQVEAAEALAKTFAEA 622
Query: 106 GKESLEVVVCR------EASDKSPRAF-WAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPT 158
+ L V+ R E K + F W LG L+L+ K + +A+ Q A+R P
Sbjct: 623 NEWELVEVISRRVLNTSENDLKRKKKFNWHHTSLGVLELNAKNFHKAIVHFQSALRISPK 682
Query: 159 SPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQ 218
+ W LG AY R G + +A+K++ RA LD + + +G + V
Sbjct: 683 DTNAWSGLGEAYARSGRYVSALKAFNRASILDPDDWYVKYFIATLEKDMGEYEVAVSTLS 742
Query: 219 LALKISSENVSAHYGLASGLLGLAKQCINLGAFRWGASLLEDACKVAEANTRLAGNMSCI 278
L + S+ + LA + LAK G + A LE + ++ L +++ I
Sbjct: 743 EILAVRSKELCVQVSLAETYVRLAKLYHARGFYSRAADSLEKSIQI--CCNVLKEDITSI 800
Query: 279 --WKLHGDIQLTYAKCFPWAEERQSLEFDVETFSASIVS--WKTTCLMAAISSKSSYQRA 334
W++ GD L++ + + F S++S TT M ++ ++
Sbjct: 801 FSWEILGDACLSFCQLKNYHNR----------FPNSLISDILFTTEAMKCANNGRQFENM 850
Query: 335 LYLAPWQ----ANIYTDIAITSDLI----------------YSLNEAYGHY-------QS 367
+YL + A +AIT I Y+L +Y + +
Sbjct: 851 IYLPDLETSSGAIFIAAVAITCFTIHLSLVADDKLLLPVSWYNLGSSYYRFYECDTTKDA 910
Query: 368 AWHVSEKMALGALLLEGDNCQFWVTLGCL-SNYNGLK--QHALIRGLQLDVSLADAWAHI 424
V+ A+ LE N FW LG L S ++ QH I+ L L+ + WA+
Sbjct: 911 TLQVAINCIKQAIKLEAKNYVFWNMLGVLFSQTKAVRSAQHCYIQSLLLNERSSGVWANY 970
Query: 425 GKLYGEVGEKKLARQAFDSARSIDPSLALPWAGMSADVQASESLVDDAFESCLRAVQILP 484
G L + + + A AF + SIDP + W G ++ A S +AVQI+
Sbjct: 971 GALCIQNHDVECANAAFTRSISIDPDNSQAWLG--------KAYCSIAVGSIRKAVQIIH 1022
Query: 485 LAEFQIGLAKLAKLS 499
A F+I K+ ++
Sbjct: 1023 HA-FEISSGKMPDVN 1036
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Component of the SKI complex involved in 3'-mRNA degradation pathway. Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) |
| >sp|P17883|SKI3_YEAST Superkiller protein 3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SKI3 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 73.2 bits (178), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 96/440 (21%), Positives = 174/440 (39%), Gaps = 43/440 (9%)
Query: 57 AVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGK-ESLEVVVC 115
A F LG Y + D RA KCY +A L D + + + E ++ +
Sbjct: 627 APGFSTLGDIYCHYYKDHLRAFKCYFKAFDLDAGDYTAAKYITETYASKPNWQAASSIAS 686
Query: 116 REASDKSPRA-----FWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAY 170
R + +A W FR +G L ++ S++++ Q A+R P W LG AY
Sbjct: 687 RLIKGEKAKAELRSNNWPFRVVGIAHLEKQEESDSIEWFQSALRVDPNDVESWVGLGQAY 746
Query: 171 HRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSA 230
H G A+IK + +AI+L + F +G + + ++ + + ++ S
Sbjct: 747 HACGRIEASIKVFDKAIQLRPSHTFAQYFKAISLCDVGEYLESLDILEKVCQEAATEESF 806
Query: 231 HYGLASGLLGLAKQCINLGAFRWGASLLEDAC-KVAEANTRLAGNMSCIWKLHGDIQLTY 289
GL L+ + + G S+ +D ++ + L +W I L+
Sbjct: 807 QIGLVEVLMRCSLDLYSQGFLLKSVSIAKDTIERIKIIISELKCENQQVW-----IYLSQ 861
Query: 290 A-KCFPWAEER------QSLE--FDVETFSA-----SIVSWKTTCLMAAISSK--SSYQR 333
+ F W E + +SL F+ FS S+ + K L+ + + S +
Sbjct: 862 VLRLFIWIESKVDTLPVESLVSIFENSQFSGSEEIDSVDNIKIDTLLDSTTDDNVSIACK 921
Query: 334 ALYLAPWQA---NIYTDIAITSDLIYSLNEAYGHYQSAWHVSEKMALGALL--------L 382
L LA + +TDIA T Y N + + E A + L
Sbjct: 922 FLILASKYSVSDQKFTDIAGTVRASYWYNIGISELTAFITLKEPQYRDAAIFAFKKSIQL 981
Query: 383 EGDNCQFWVTLGCLS---NYNGLKQHALIRGLQLDVSLADAWAHIGKLYGEVGEKKLARQ 439
+ + + W+ LG + N+ + QH I+ L+ + W ++ L + + + A+Q
Sbjct: 982 QSNTSETWIGLGIATMDINFR-VSQHCFIKATALEPKATNTWFNLAMLGLKKKDTEFAQQ 1040
Query: 440 AFDSARSIDPSLALPWAGMS 459
+ +S+ P + PW GM+
Sbjct: 1041 VLNKLQSLAPQDSSPWLGMA 1060
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Component of the SKI complex involved in 3'-mRNA degradation pathway. Represses dsRNA virus propagation by specifically blocking translation of viral mRNAs, perhaps recognizing the absence of CAP or poly(A). Essential for cell growth only in the presence of M1 replicon. Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292) |
| >sp|O18158|OGT1_CAEEL UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase OS=Caenorhabditis elegans GN=ogt-1 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 103/436 (23%), Positives = 173/436 (39%), Gaps = 61/436 (13%)
Query: 36 SESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSG 95
+++ EK+ ++ ++A K+N Q A A+ LG+YY Q A++ Y+ AV L P+ +
Sbjct: 172 TKNLEKSMQYSMLAIKVNNQCAEAYSNLGNYYKEKG-QLQDALENYKLAVKLKPEFIDAY 230
Query: 96 EALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRG 155
L L GG V A +P + LG L + EA AI
Sbjct: 231 INLAAALVSGGDLEQAVTAYFNALQINPDLYCVRSDLGNLLKAMGRLEEAKVCYLKAIET 290
Query: 156 YPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVE 215
P W LG ++ G AI + +A+ LD + + GN+ F + V
Sbjct: 291 QPQFAVAWSNLGCVFNSQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVS 350
Query: 216 QFQLALKISSENVSAHYGLA-----SGLLGLA----KQCINL-----GAFRWGASLLEDA 261
+ AL +S + H LA GL+ LA K+ I+L A+ A+ L++
Sbjct: 351 AYLRALNLSGNHAVVHGNLACVYYEQGLIDLAIDTYKKAIDLQPHFPDAYCNLANALKEK 410
Query: 262 CKVAEANTRLAGNMSCIWKLHGDIQLTYAKCFPWAEERQSLEFDVETFSASIVSWKTTCL 321
V EA + + H D Q A E+ +E
Sbjct: 411 GSVVEAEQMYMKALE-LCPTHADSQNNLANI---KREQGKIE------------------ 448
Query: 322 MAAISSKSSYQRALYLAPWQANIYTDIAITSDLIYSLNEAYGHYQSAWHVSEKMA----- 376
+ Y +AL + P A ++++A LN+A HY+ A ++ A
Sbjct: 449 ----DATRLYLKALEIYPEFAAAHSNLASILQQQGKLNDAILHYKEAIRIAPTFADAYSN 504
Query: 377 LGALLLE-GDNCQFWVTLGCLSNYNGLKQHALIRGLQLDVSLADAWAHIGKLYGEVGEKK 435
+G L E GD+ + C YN R +Q++ + ADA +++ ++ + G
Sbjct: 505 MGNTLKEMGDSS---AAIAC---YN--------RAIQINPAFADAHSNLASIHKDAGNMA 550
Query: 436 LARQAFDSARSIDPSL 451
A Q++ +A + P
Sbjct: 551 EAIQSYSTALKLKPDF 566
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Addition of nucleotide-activated sugars directly onto the polypeptide through O-glycosidic linkage with the hydroxyl of serine or threonine. Caenorhabditis elegans (taxid: 6239) EC: 2 EC: . EC: 4 EC: . EC: 1 EC: . EC: - |
| >sp|Q9M8Y0|SEC_ARATH Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SEC OS=Arabidopsis thaliana GN=SEC PE=2 SV=1 | Back alignment and function description |
|---|
Score = 60.5 bits (145), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 52/240 (21%), Positives = 91/240 (37%), Gaps = 35/240 (14%)
Query: 32 LWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDD 91
L+ S +A +++ A KL P A+ LG+ Y T+ AI CYQ A+ + P+
Sbjct: 232 LFMESGDLNRALQYYKEAVKLKPAFPDAYLNLGNVYKALGRPTE-AIMCYQHALQMRPNS 290
Query: 92 SVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQH 151
+++ + + G+ L + ++A + PR A+ LG + EAV+
Sbjct: 291 AMAFGNIASIYYEQGQLDLAIRHYKQALSRDPRFLEAYNNLGNALKDIGRVDEAVRCYNQ 350
Query: 152 AIRGYPTSPHL----------WEALGLA------------------------YHRLGMFS 177
+ P P W +G A Y + G +S
Sbjct: 351 CLALQPNHPQAMANLGNIYMEWNMMGPASSLFKATLAVTTGLSAPFNNLAIIYKQQGNYS 410
Query: 178 AAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLASG 237
AI Y + +D + L+ GN + +G + ++ + A+ AH LAS
Sbjct: 411 DAISCYNEVLRIDPLAADALVNRGNTYKEIGRVTEAIQDYMHAINFRPTMAEAHANLASA 470
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O-linked N-acetylglucosamine transferase (OGT) that mediates O-glycosylation of capsid protein (CP) of virus in case of infection by Plum pox virus. OGTs catalyze the addition of nucleotide-activated sugars directly onto the polypeptide through O-glycosidic linkage with the hydroxyl of serine or threonine. Probably acts by adding O-linked sugars to yet unknown proteins. Its OGT activity has been proved in vitro but not in vivo. Required with SPY for gamete and seed development. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 4 EC: . EC: 1 EC: . EC: - |
| >sp|Q8CGY8|OGT1_MOUSE UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit OS=Mus musculus GN=Ogt PE=1 SV=2 | Back alignment and function description |
|---|
Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 103/435 (23%), Positives = 163/435 (37%), Gaps = 67/435 (15%)
Query: 40 EKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALC 99
+++A +A K NP A A+ LG+ Y Q AI+ Y+ A+ L PD L
Sbjct: 72 DRSAHFSTLAIKQNPLLAEAYSNLGNVYKERG-QLQEAIEHYRHALRLKPDFIDGYINLA 130
Query: 100 ELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTS 159
L G V A +P + LG L + EA AI P
Sbjct: 131 AALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNF 190
Query: 160 PHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQL 219
W LG ++ G AI + +A+ LD + + GN+ F + V +
Sbjct: 191 AVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLR 250
Query: 220 ALKISSENVSAHYGLA-----SGLLGLA----KQCINL-----GAFRWGASLLEDACKVA 265
AL +S + H LA GL+ LA ++ I L A+ A+ L++ VA
Sbjct: 251 ALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVA 310
Query: 266 EA----NTRLAGNMSCIWKLHGDIQLTYAKCFPWAEERQSLEFDVETFSASIVSWKTTCL 321
EA NT L + H D A E+ ++E V
Sbjct: 311 EAEDCYNTALR-----LCPTHADSLNNLANI---KREQGNIEEAVRL------------- 349
Query: 322 MAAISSKSSYQRALYLAPWQANIYTDIAITSDLIYSLNEAYGHYQSAWHVSEKMA----- 376
Y++AL + P A ++++A L EA HY+ A +S A
Sbjct: 350 ---------YRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSN 400
Query: 377 LGALLLEGDNCQFWVTLGCLSNYNGLKQHALIRGLQLDVSLADAWAHIGKLYGEVGEKKL 436
+G L E + Q G L Y R +Q++ + ADA +++ ++ + G
Sbjct: 401 MGNTLKEMQDVQ-----GALQCYT--------RAIQINPAFADAHSNLASIHKDSGNIPE 447
Query: 437 ARQAFDSARSIDPSL 451
A ++ +A + P
Sbjct: 448 AIASYRTALKLKPDF 462
|
Catalyzes the transfer of a single N-acetylglucosamine from UDP-GlcNAc to a serine or threonine residue in cytoplasmic and nuclear proteins resulting in their modification with a beta-linked N-acetylglucosamine (O-GlcNAc). Glycosylates a large and diverse number of proteins including histone H2B, AKT1, MLL5, MAPT/TAU and HCFC1. Can regulate their cellular processes via cross-talk between glycosylation and phosphorylation or by affecting proteolytic processing. Involved in insulin resistance in muscle and adipocyte cells via glycosylating insulin signaling components and inhibiting the 'Thr-308' phosphorylation of AKT1, enhancing IRS1 phosphorylation and attenuating insulin signaling. Component of a THAP1/THAP3-HCFC1-OGT complex that is required for the regulation of the transcriptional activity of RRM1. As part of the NSL complex it may be involved in acetylation of nucleosomal histone H4 on several lysine residues. Mus musculus (taxid: 10090) EC: 2 EC: . EC: 4 EC: . EC: 1 EC: . EC: 2 EC: 5 EC: 5 |
| >sp|P81436|OGT1_RABIT UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit OS=Oryctolagus cuniculus GN=OGT PE=1 SV=2 | Back alignment and function description |
|---|
Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 103/435 (23%), Positives = 163/435 (37%), Gaps = 67/435 (15%)
Query: 40 EKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALC 99
+++A +A K NP A A+ LG+ Y Q AI+ Y+ A+ L PD L
Sbjct: 72 DRSAHFSTLAIKQNPLLAEAYSNLGNVYKERG-QLQEAIEHYRHALRLKPDFIDGYINLA 130
Query: 100 ELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTS 159
L G V A +P + LG L + EA AI P
Sbjct: 131 AALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNF 190
Query: 160 PHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQL 219
W LG ++ G AI + +A+ LD + + GN+ F + V +
Sbjct: 191 AVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLR 250
Query: 220 ALKISSENVSAHYGLA-----SGLLGLA----KQCINL-----GAFRWGASLLEDACKVA 265
AL +S + H LA GL+ LA ++ I L A+ A+ L++ VA
Sbjct: 251 ALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVA 310
Query: 266 EA----NTRLAGNMSCIWKLHGDIQLTYAKCFPWAEERQSLEFDVETFSASIVSWKTTCL 321
EA NT L + H D A E+ ++E V
Sbjct: 311 EAEDCYNTALR-----LCPTHADSLNNLANI---KREQGNIEEAVRL------------- 349
Query: 322 MAAISSKSSYQRALYLAPWQANIYTDIAITSDLIYSLNEAYGHYQSAWHVSEKMA----- 376
Y++AL + P A ++++A L EA HY+ A +S A
Sbjct: 350 ---------YRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSN 400
Query: 377 LGALLLEGDNCQFWVTLGCLSNYNGLKQHALIRGLQLDVSLADAWAHIGKLYGEVGEKKL 436
+G L E + Q G L Y R +Q++ + ADA +++ ++ + G
Sbjct: 401 MGNTLKEMQDVQ-----GALQCYT--------RAIQINPAFADAHSNLASIHKDSGNIPE 447
Query: 437 ARQAFDSARSIDPSL 451
A ++ +A + P
Sbjct: 448 AIASYRTALKLKPDF 462
|
Catalyzes the transfer of a single N-acetylglucosamine from UDP-GlcNAc to a serine or threonine residue in cytoplasmic and nuclear proteins resulting in their modification with a beta-linked N-acetylglucosamine (O-GlcNAc). Glycosylates a large and diverse number of proteins including histone H2B, AKT1, MLL5, MAPT/TAU and HCFC1. Can regulate their cellular processes via cross-talk between glycosylation and phosphorylation or by affecting proteolytic processing. Involved in insulin resistance in muscle and adipocyte cells via glycosylating insulin signaling components and inhibiting the 'Thr-308' phosphorylation of AKT1, enhancing IRS1 phosphorylation and attenuating insulin signaling. Component of a THAP1/THAP3-HCFC1-OGT complex that is required for the regulation of the transcriptional activity of RRM1. As part of the NSL complex it may be involved in acetylation of nucleosomal histone H4 on several lysine residues. Oryctolagus cuniculus (taxid: 9986) EC: 2 EC: . EC: 4 EC: . EC: 1 EC: . EC: 2 EC: 5 EC: 5 |
| >sp|Q27HV0|OGT1_PIG UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit OS=Sus scrofa GN=OGT PE=2 SV=1 | Back alignment and function description |
|---|
Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 103/435 (23%), Positives = 163/435 (37%), Gaps = 67/435 (15%)
Query: 40 EKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALC 99
+++A +A K NP A A+ LG+ Y Q AI+ Y+ A+ L PD L
Sbjct: 72 DRSAHFSTLAIKQNPLLAEAYSNLGNVYKERG-QLQEAIEHYRHALRLKPDFIDGYINLA 130
Query: 100 ELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTS 159
L G V A +P + LG L + EA AI P
Sbjct: 131 AALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNF 190
Query: 160 PHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQL 219
W LG ++ G AI + +A+ LD + + GN+ F + V +
Sbjct: 191 AVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLR 250
Query: 220 ALKISSENVSAHYGLA-----SGLLGLA----KQCINL-----GAFRWGASLLEDACKVA 265
AL +S + H LA GL+ LA ++ I L A+ A+ L++ VA
Sbjct: 251 ALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVA 310
Query: 266 EA----NTRLAGNMSCIWKLHGDIQLTYAKCFPWAEERQSLEFDVETFSASIVSWKTTCL 321
EA NT L + H D A E+ ++E V
Sbjct: 311 EAEDCYNTALR-----LCPTHADSLNNLANI---KREQGNIEEAVRL------------- 349
Query: 322 MAAISSKSSYQRALYLAPWQANIYTDIAITSDLIYSLNEAYGHYQSAWHVSEKMA----- 376
Y++AL + P A ++++A L EA HY+ A +S A
Sbjct: 350 ---------YRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSN 400
Query: 377 LGALLLEGDNCQFWVTLGCLSNYNGLKQHALIRGLQLDVSLADAWAHIGKLYGEVGEKKL 436
+G L E + Q G L Y R +Q++ + ADA +++ ++ + G
Sbjct: 401 MGNTLKEMQDVQ-----GALQCYT--------RAIQINPAFADAHSNLASIHKDSGNIPE 447
Query: 437 ARQAFDSARSIDPSL 451
A ++ +A + P
Sbjct: 448 AIASYRTALKLKPDF 462
|
Catalyzes the transfer of a single N-acetylglucosamine from UDP-GlcNAc to a serine or threonine residue in cytoplasmic and nuclear proteins resulting in their modification with a beta-linked N-acetylglucosamine (O-GlcNAc). Glycosylates a large and diverse number of proteins including histone H2B, AKT1, MLL5, MAPT/TAU and HCFC1. Can regulate their cellular processes via cross-talk between glycosylation and phosphorylation or by affecting proteolytic processing. Involved in insulin resistance in muscle and adipocyte cells via glycosylating insulin signaling components and inhibiting the 'Thr-308' phosphorylation of AKT1, enhancing IRS1 phosphorylation and attenuating insulin signaling. Component of a THAP1/THAP3-HCFC1-OGT complex that is required for the regulation of the transcriptional activity of RRM1. As part of the NSL complex it may be involved in acetylation of nucleosomal histone H4 on several lysine residues. Sus scrofa (taxid: 9823) EC: 2 EC: . EC: 4 EC: . EC: 1 EC: . EC: 2 EC: 5 EC: 5 |
| >sp|O15294|OGT1_HUMAN UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit OS=Homo sapiens GN=OGT PE=1 SV=3 | Back alignment and function description |
|---|
Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 103/435 (23%), Positives = 163/435 (37%), Gaps = 67/435 (15%)
Query: 40 EKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALC 99
+++A +A K NP A A+ LG+ Y Q AI+ Y+ A+ L PD L
Sbjct: 72 DRSAHFSTLAIKQNPLLAEAYSNLGNVYKERG-QLQEAIEHYRHALRLKPDFIDGYINLA 130
Query: 100 ELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTS 159
L G V A +P + LG L + EA AI P
Sbjct: 131 AALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNF 190
Query: 160 PHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQL 219
W LG ++ G AI + +A+ LD + + GN+ F + V +
Sbjct: 191 AVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLR 250
Query: 220 ALKISSENVSAHYGLA-----SGLLGLA----KQCINL-----GAFRWGASLLEDACKVA 265
AL +S + H LA GL+ LA ++ I L A+ A+ L++ VA
Sbjct: 251 ALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVA 310
Query: 266 EA----NTRLAGNMSCIWKLHGDIQLTYAKCFPWAEERQSLEFDVETFSASIVSWKTTCL 321
EA NT L + H D A E+ ++E V
Sbjct: 311 EAEDCYNTALR-----LCPTHADSLNNLANI---KREQGNIEEAVRL------------- 349
Query: 322 MAAISSKSSYQRALYLAPWQANIYTDIAITSDLIYSLNEAYGHYQSAWHVSEKMA----- 376
Y++AL + P A ++++A L EA HY+ A +S A
Sbjct: 350 ---------YRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSN 400
Query: 377 LGALLLEGDNCQFWVTLGCLSNYNGLKQHALIRGLQLDVSLADAWAHIGKLYGEVGEKKL 436
+G L E + Q G L Y R +Q++ + ADA +++ ++ + G
Sbjct: 401 MGNTLKEMQDVQ-----GALQCYT--------RAIQINPAFADAHSNLASIHKDSGNIPE 447
Query: 437 ARQAFDSARSIDPSL 451
A ++ +A + P
Sbjct: 448 AIASYRTALKLKPDF 462
|
Isoform 2, the mitochondrial isoform (mOGT), is cytotoxic and triggers apoptosis in several cell types including INS1, an insulinoma cell line. Homo sapiens (taxid: 9606) EC: 2 EC: . EC: 4 EC: . EC: 1 EC: . EC: 2 EC: 5 EC: 5 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1173 | ||||||
| 255539380 | 1236 | o-linked n-acetylglucosamine transferase | 0.986 | 0.936 | 0.706 | 0.0 | |
| 297745630 | 1205 | unnamed protein product [Vitis vinifera] | 0.972 | 0.946 | 0.669 | 0.0 | |
| 359491935 | 1190 | PREDICTED: uncharacterized protein LOC10 | 0.971 | 0.957 | 0.668 | 0.0 | |
| 356497520 | 1179 | PREDICTED: uncharacterized protein LOC10 | 0.994 | 0.988 | 0.633 | 0.0 | |
| 334183946 | 1168 | superkiller protein 3-like protein [Arab | 0.988 | 0.993 | 0.624 | 0.0 | |
| 449485236 | 1194 | PREDICTED: tetratricopeptide repeat prot | 0.986 | 0.969 | 0.606 | 0.0 | |
| 334183944 | 1140 | superkiller protein 3-like protein [Arab | 0.965 | 0.992 | 0.611 | 0.0 | |
| 297839541 | 1078 | tetratricopeptide repeat-containing prot | 0.904 | 0.984 | 0.595 | 0.0 | |
| 115483264 | 1196 | Os10g0548200 [Oryza sativa Japonica Grou | 0.989 | 0.970 | 0.511 | 0.0 | |
| 242035181 | 1195 | hypothetical protein SORBIDRAFT_01g02992 | 0.986 | 0.968 | 0.511 | 0.0 |
| >gi|255539380|ref|XP_002510755.1| o-linked n-acetylglucosamine transferase, ogt, putative [Ricinus communis] gi|223551456|gb|EEF52942.1| o-linked n-acetylglucosamine transferase, ogt, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1671 bits (4327), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 819/1159 (70%), Positives = 951/1159 (82%), Gaps = 2/1159 (0%)
Query: 12 EDSLEANPDDPSLHLDLGLHLWENS-ESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRF 70
E+SL+ +P+DP L LG+ LWE ESKEKAAEHFVI+AKLNPQNA AFRYLGHYY
Sbjct: 18 EESLDEHPEDPDLRFKLGVLLWEKGGESKEKAAEHFVISAKLNPQNAAAFRYLGHYYYSG 77
Query: 71 SIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFR 130
D+QRA+KCYQRA+SL+PDDS G++LCELLE GKE+LEV VCREAS+KSPRAFWAFR
Sbjct: 78 G-DSQRALKCYQRAISLNPDDSECGDSLCELLEESGKETLEVAVCREASEKSPRAFWAFR 136
Query: 131 RLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELD 190
RLGYL LHH +WS+AVQSLQHAIRGYPTSP LWEALGLAY RLGMF+AA KSYGRAIEL+
Sbjct: 137 RLGYLHLHHTRWSDAVQSLQHAIRGYPTSPDLWEALGLAYQRLGMFTAATKSYGRAIELE 196
Query: 191 DTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLASGLLGLAKQCINLGA 250
DT +F L+ESGNI+LMLG+FRKG+EQFQ AL+IS +NVSA+YGLASGLL L+K+C+NLGA
Sbjct: 197 DTRVFALVESGNIYLMLGSFRKGIEQFQRALEISPQNVSANYGLASGLLSLSKECMNLGA 256
Query: 251 FRWGASLLEDACKVAEANTRLAGNMSCIWKLHGDIQLTYAKCFPWAEERQSLEFDVETFS 310
F+WG+SLLEDA KVA+A +LA N+SCIWKLHGDIQLT+AKCFPW E S +FD+E+F
Sbjct: 257 FKWGSSLLEDAAKVADATAQLAANISCIWKLHGDIQLTHAKCFPWMEGDNSAKFDMESFD 316
Query: 311 ASIVSWKTTCLMAAISSKSSYQRALYLAPWQANIYTDIAITSDLIYSLNEAYGHYQSAWH 370
ASI+SWK TC +A S++ SYQRAL+LAPWQAN+Y DIAIT DLI S+ E YGH W
Sbjct: 317 ASILSWKQTCNVATKSARRSYQRALHLAPWQANLYIDIAITLDLISSMTENYGHNNYPWQ 376
Query: 371 VSEKMALGALLLEGDNCQFWVTLGCLSNYNGLKQHALIRGLQLDVSLADAWAHIGKLYGE 430
+SEKMALGALLLEGDN +FWV LGCLS +N +KQHALIRGLQLD S AWA++GKLY E
Sbjct: 377 LSEKMALGALLLEGDNYEFWVALGCLSCHNAMKQHALIRGLQLDGSSVVAWAYLGKLYRE 436
Query: 431 VGEKKLARQAFDSARSIDPSLALPWAGMSADVQASESLVDDAFESCLRAVQILPLAEFQI 490
GE KLARQAFD ARS+DPSLALPWAGM+AD E D+AFESCLRAVQILPLAEFQI
Sbjct: 437 EGENKLARQAFDCARSMDPSLALPWAGMAADTHTREPATDEAFESCLRAVQILPLAEFQI 496
Query: 491 GLAKLAKLSGHLSSSQVFGAIQQAIQRGPHYPESHNLYGLVCEARSDYQAAVVSYRLARY 550
GLAKLA LSG+L+SSQVFGAIQQA+ R PHYPESHNL GLVCEARSDYQAAVVSYR AR
Sbjct: 497 GLAKLALLSGNLASSQVFGAIQQAVLRAPHYPESHNLKGLVCEARSDYQAAVVSYRFARC 556
Query: 551 AISSSSGTVPNSHFQDISINLARSLSRAGNALDAVRECESLERQGMLDAEVLQVYAFSLW 610
AI+ SSG SHF+DI++NLARSL AG A DAV+ECE+L+ +GMLD E LQ+YAF LW
Sbjct: 557 AINISSGNASKSHFRDIAVNLARSLCMAGYAADAVKECENLKTEGMLDTEGLQIYAFCLW 616
Query: 611 QLGKYDLALSMARNLASSVSAMEQSSAAASVSFICRLLYHISGLDSTINSILKMPKGLFQ 670
QLGK DLALS+A LA+SV M+Q+ AAAS+SF CRLLY+ISGLDSTI I K+PK LFQ
Sbjct: 617 QLGKSDLALSVASILAASVPTMDQTFAAASLSFFCRLLYYISGLDSTIARISKIPKELFQ 676
Query: 671 CSKMSFIVSAIHALDHSNRLESVVSSSRNCIASPEEITGMHYLVALNKLVKNGPESCLGF 730
SK+SFI+SA+HALDHSNRLES VSSSR I S E+ITGMHYL+AL KL+K+G ESCLGF
Sbjct: 677 SSKVSFILSAMHALDHSNRLESAVSSSRCSIVSHEDITGMHYLIALGKLIKDGSESCLGF 736
Query: 731 NSGIFHLRKVLHVYPNCNLIRNLLGYLLLSSDEWRYSHVASRCCSLETSDCIKKEGPKSA 790
SGI HL+K LH YPN L+RNLLG+LLLSS+EW+ +HVASRCC +++ K G KS
Sbjct: 737 QSGINHLKKSLHKYPNSKLMRNLLGHLLLSSEEWKQTHVASRCCMIDSPCNANKVGLKSG 796
Query: 791 WEILGAEGVACNVIGSVDLKFSFPTCIYEHLTGPKAVQELQKCLHREPWNYNVRYLLVLN 850
EILGA VAC IG+ D K+SFPTC Y+ GP+ +QELQK LH EPWN+N RYLL+LN
Sbjct: 797 CEILGAGSVACYAIGNKDPKYSFPTCGYQCQNGPEIIQELQKYLHHEPWNHNARYLLILN 856
Query: 851 LLQKAREERFPRHLCTILQRLIHVALSCEFYSIQHTSYQYQKFQLLLCASEISLQGGNIT 910
++Q+AREERFP+ LC IL+RLI+VALS E YS SY+ QKFQLLLC SEISLQGGN
Sbjct: 857 IMQRAREERFPQQLCVILRRLINVALSNELYSRDSLSYRCQKFQLLLCHSEISLQGGNQV 916
Query: 911 GCINHAKSASALLLPDAYRFFGHLLLSRAYAAEGNMLNLQDEYVRCLELKTDYVIGWMCL 970
GCI AKSA +LLLP+ Y FFGHLLL R YA+ GN NLQ+EYVRCLEL+TDY IGW+CL
Sbjct: 917 GCIKLAKSAVSLLLPNNYLFFGHLLLCRIYASGGNYANLQEEYVRCLELRTDYYIGWICL 976
Query: 971 KVVESLYEVQADTNTIELSFNECLKQGNNSRLIWTAKFNLVLGFVFLWKKDFFSAEKCLA 1030
K++ES Y++Q D+N ELSF EC K+ S +W A FNLV G V W ++F SA + A
Sbjct: 977 KIMESQYDIQIDSNISELSFEECSKEWKCSWNMWLAVFNLVFGLVSSWNQEFLSAVESFA 1036
Query: 1031 QACSLAGAESCLFLCHGTICMEIARQYHDSHFLSLAVRSLTKAQKTSFVQLPVVSLLLAQ 1090
QACSLAGA+SCLFLCHG CME+AR+ SHFLSLAVRS T+A S + LP+VSLLLAQ
Sbjct: 1037 QACSLAGADSCLFLCHGATCMELARESRSSHFLSLAVRSFTRAHANSAIPLPIVSLLLAQ 1096
Query: 1091 AEGSLSSIEKWEKNLRLEWFTWPPEMRPAELFFQMHLLAMLSKAGSDSSSRVEFCQSPQK 1150
AEGSL +KW+KNLR EW++WPPEMRPAELFFQMHLLA S+AG DSSS +E CQSPQK
Sbjct: 1097 AEGSLGYKQKWQKNLRFEWYSWPPEMRPAELFFQMHLLARQSEAGFDSSSNLELCQSPQK 1156
Query: 1151 WVLRAIHTNPSCLRYWKVL 1169
WVLRAIHTNPSCLRYWKV+
Sbjct: 1157 WVLRAIHTNPSCLRYWKVV 1175
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297745630|emb|CBI40795.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1542 bits (3992), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 783/1169 (66%), Positives = 927/1169 (79%), Gaps = 28/1169 (2%)
Query: 7 LLLQLEDSLEANPDDPSLHLDLGLHLWENSESKEK--AAEHFVIAAKLNPQNAVAFRYLG 64
+L +L++S+++NPDD SLH +LG+ LWE E + K AAEHFV +AKLNPQN AFRYLG
Sbjct: 62 VLRKLQESVDSNPDDASLHFNLGVFLWEKEEQEWKEKAAEHFVRSAKLNPQNGDAFRYLG 121
Query: 65 HYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPR 124
HYY R S+DTQRA KCYQR+V+L+P+DS SGEALC+LL+ GGKE+LE+ VCREAS+KSPR
Sbjct: 122 HYYARVSVDTQRAFKCYQRSVTLNPNDSDSGEALCDLLDLGGKETLEIAVCREASEKSPR 181
Query: 125 AFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYG 184
AFWAFRRLGYLQLH KWSEAVQSLQHAIRGYP+ LWEALGLAY RLGMF+AAIKSYG
Sbjct: 182 AFWAFRRLGYLQLHQNKWSEAVQSLQHAIRGYPSCADLWEALGLAYQRLGMFTAAIKSYG 241
Query: 185 RAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLASGLLGLAKQ 244
R IEL+D+ IF L+ESGNIFLMLG+FRKG+EQF+ AL+IS ++VSAHYGLASGLL L+K+
Sbjct: 242 RVIELEDSRIFALVESGNIFLMLGSFRKGIEQFRQALEISPKSVSAHYGLASGLLSLSKE 301
Query: 245 CINLGAFRWGASLLEDACKVAEANTRLAGNMSCIWKLHGDIQLTYAKCFPWAEERQSLEF 304
C NLGAFRWG SLLE+A KVA++ T LAGN+SCIWKLHGDIQL YAKC PW EE +LE
Sbjct: 302 CTNLGAFRWGTSLLEEASKVAKSTTCLAGNVSCIWKLHGDIQLAYAKCLPWLEENWNLEI 361
Query: 305 DVETFSASIVSWKTTCLMAAISSKSSYQRALYLAPWQANIYTDIAITSDLIYSLNEAYGH 364
D E FS SI++WK +C ++AIS+ SYQRAL+LAPWQANIYTDIAI+SDLI SL E H
Sbjct: 362 DEEAFSNSILNWKRSCCLSAISANYSYQRALHLAPWQANIYTDIAISSDLICSLKEDDKH 421
Query: 365 YQSAWHVSEKMALGALLLEGDNCQFWVTLGCLSNYNGLKQHALIRGLQLDVSLADAWAHI 424
++W + EKM+LG LLLEGDN +FWVTLG +S +N LKQHA IRGLQLDVSLA AWA +
Sbjct: 422 NPNSWQLPEKMSLGGLLLEGDNNEFWVTLGFVSGHNALKQHAFIRGLQLDVSLAVAWACL 481
Query: 425 GKLYGEVGEKKLARQAFDSARSIDPSLALPWAGMSADVQASESLVDDAFESCLRAVQILP 484
GKLY + GEK+LARQAFDSARSIDPSLALPWAGMSAD A + D+A+ESCLRAVQILP
Sbjct: 482 GKLYRKEGEKQLARQAFDSARSIDPSLALPWAGMSADTHARDPTTDEAYESCLRAVQILP 541
Query: 485 LAEFQIGLAKLAKLSGHLSSSQVFGAIQQAIQRGPHYPESHNLYGLVCEARSDYQAAVVS 544
+AEFQIGLAKLA LSGHLSSSQVFGAIQQA+Q P+YPESHNL GLVCEAR DYQ+AV S
Sbjct: 542 VAEFQIGLAKLALLSGHLSSSQVFGAIQQAVQHAPYYPESHNLNGLVCEARCDYQSAVAS 601
Query: 545 YRLARYAISSSSGTVPNSHFQDISINLARSLSRAGNALDAVRECESLERQGMLDAEVLQV 604
YRLAR AI++ SG++ SH +DIS N+ARSLS+AGNALDAV+ECE L+++G+LDA+ LQ+
Sbjct: 602 YRLARCAINTFSGSILKSHLRDISFNIARSLSKAGNALDAVQECEDLKKEGLLDAQGLQI 661
Query: 605 YAFSLWQLGKYDLALSMARNLASSVSAMEQSSAAASVSFICRLLYHISGLDSTINSILKM 664
YA SLWQ+G+ DLALS+AR+LA+S +S I SILKM
Sbjct: 662 YAISLWQIGENDLALSVARDLAAS--------------------------ESAIISILKM 695
Query: 665 PKGLFQCSKMSFIVSAIHALDHSNRLESVVSSSRNCIASPEEITGMHYLVALNKLVKNGP 724
PK LFQ SK+SF+VSAI ALD SN+LESVVSSSR +AS EEI MH LVAL KLVK G
Sbjct: 696 PKELFQNSKISFVVSAIDALDESNKLESVVSSSRYFLASHEEIARMHCLVALGKLVKQGS 755
Query: 725 ESCLGFNSGIFHLRKVLHVYPNCNLIRNLLGYLLLSSDEWRYSHVASRCCSLETSDCIKK 784
E CLGF +G+ HLRK LH++PN LIRNLLGYLLLSS E +H ASRCC ++ S K
Sbjct: 756 EHCLGFENGVHHLRKALHMFPNSVLIRNLLGYLLLSSQEGEDAHSASRCCIVDPSHSPNK 815
Query: 785 EGPKSAWEILGAEGVACNVIGSVDLKFSFPTCIYEHLTGPKAVQELQKCLHREPWNYNVR 844
EG KSA+EILGA VAC G + KFSFPTC Y ++GP A+Q+LQK LHREPWN+N R
Sbjct: 816 EGSKSAFEILGAGAVACFASGMSNQKFSFPTCRYRCMSGPGAIQQLQKWLHREPWNHNAR 875
Query: 845 YLLVLNLLQKAREERFPRHLCTILQRLIHVALSCEFYSIQHTSYQYQKFQLLLCASEISL 904
YLL+LN LQKAREERFPRHLCTI++RL VA+S Y + T QYQKFQLLLCASEISL
Sbjct: 876 YLLILNFLQKAREERFPRHLCTIIERLNFVAISNHLYLKKDTCCQYQKFQLLLCASEISL 935
Query: 905 QGGNITGCINHAKSASALLLPDAYRFFGHLLLSRAYAAEGNMLNLQDEYVRCLELKTDYV 964
QGG+ GC+NHA++AS LLLPD Y FF HL L RAY A+ + NL+ EY++CLELKTDY
Sbjct: 936 QGGDHLGCVNHAENASTLLLPDCYLFFAHLQLCRAYVAKDDFKNLRKEYIKCLELKTDYC 995
Query: 965 IGWMCLKVVESLYEVQADTNTIELSFNECLKQGNNSRLIWTAKFNLVLGFVFLWKKDFFS 1024
IGW+CLK ++ +E+Q D + EL+F EC K+ +S W A F+L+ G + + +DF
Sbjct: 996 IGWLCLKFMDPHHELQNDLSISELNFKECSKERKSSCNKWMALFDLLQGLISVQNQDFLC 1055
Query: 1025 AEKCLAQACSLAGAESCLFLCHGTICMEIARQYHDSHFLSLAVRSLTKAQKTSFVQLPVV 1084
AE+ LAQACSL+ ESC+FLCHG ICME+ARQ DS +LS A++SL KAQ+ S + LP V
Sbjct: 1056 AEEFLAQACSLSDTESCIFLCHGVICMELARQQCDSQYLSHAIKSLMKAQEISLIPLPFV 1115
Query: 1085 SLLLAQAEGSLSSIEKWEKNLRLEWFTWPPEMRPAELFFQMHLLAMLSKAGSDSSSRVEF 1144
LLAQAE S S KWEKNL LEWF+WPPE+RPAELF QMHLLA SK+GS+SSS VE
Sbjct: 1116 PTLLAQAEASRGSKAKWEKNLCLEWFSWPPEVRPAELFLQMHLLARHSKSGSESSSCVEP 1175
Query: 1145 CQSPQKWVLRAIHTNPSCLRYWKVLHKLF 1173
QS Q+WVLRAIH NPSCLRYWKVL KL
Sbjct: 1176 HQSQQRWVLRAIHLNPSCLRYWKVLQKLM 1204
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359491935|ref|XP_002274003.2| PREDICTED: uncharacterized protein LOC100259801 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1537 bits (3980), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 782/1169 (66%), Positives = 925/1169 (79%), Gaps = 30/1169 (2%)
Query: 7 LLLQLEDSLEANPDDPSLHLDLGLHLWENSESKEK--AAEHFVIAAKLNPQNAVAFRYLG 64
+L +L++S+++NPDD SLH +LG+ LWE E + K AAEHFV +AKLNPQN AFRYLG
Sbjct: 49 VLRKLQESVDSNPDDASLHFNLGVFLWEKEEQEWKEKAAEHFVRSAKLNPQNGDAFRYLG 108
Query: 65 HYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPR 124
HYY R S+DTQRA KCYQR+V+L+P+DS SGEALC+LL+ GGKE+LE+ VCREAS+KSPR
Sbjct: 109 HYYARVSVDTQRAFKCYQRSVTLNPNDSDSGEALCDLLDLGGKETLEIAVCREASEKSPR 168
Query: 125 AFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYG 184
AFWAFRRLGYLQLH KWSEAVQSLQHAIRGYP+ LWEALGLAY RLGMF+AAIKSYG
Sbjct: 169 AFWAFRRLGYLQLHQNKWSEAVQSLQHAIRGYPSCADLWEALGLAYQRLGMFTAAIKSYG 228
Query: 185 RAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLASGLLGLAKQ 244
R IEL+D+ IF L+ESGNIFLMLG+FRKG+EQF+ AL+IS ++VSAHYGLASGLL L+K+
Sbjct: 229 RVIELEDSRIFALVESGNIFLMLGSFRKGIEQFRQALEISPKSVSAHYGLASGLLSLSKE 288
Query: 245 CINLGAFRWGASLLEDACKVAEANTRLAGNMSCIWKLHGDIQLTYAKCFPWAEERQSLEF 304
C NLGAFRWG SLLE+A KVA++ T LAGN+SCIWKLHGDIQL YAKC PW EE +LE
Sbjct: 289 CTNLGAFRWGTSLLEEASKVAKSTTCLAGNVSCIWKLHGDIQLAYAKCLPWLEENWNLEI 348
Query: 305 DVETFSASIVSWKTTCLMAAISSKSSYQRALYLAPWQANIYTDIAITSDLIYSLNEAYGH 364
D E FS SI++WK +C ++AIS+ SYQRAL+LAPWQANIYTDIAI+SDLI SL E H
Sbjct: 349 DEEAFSNSILNWKRSCCLSAISANYSYQRALHLAPWQANIYTDIAISSDLICSLKEDDKH 408
Query: 365 YQSAWHVSEKMALGALLLEGDNCQFWVTLGCLSNYNGLKQHALIRGLQLDVSLADAWAHI 424
++W + EKM+LG LLLEGDN +FWVTLG +S +N LKQHA IRGLQLDVSLA AWA +
Sbjct: 409 NPNSWQLPEKMSLGGLLLEGDNNEFWVTLGFVSGHNALKQHAFIRGLQLDVSLAVAWACL 468
Query: 425 GKLYGEVGEKKLARQAFDSARSIDPSLALPWAGMSADVQASESLVDDAFESCLRAVQILP 484
GKLY + GEK+LARQAFDSARSIDPSLALPWAGMSAD A + D+A+ESCLRAVQILP
Sbjct: 469 GKLYRKEGEKQLARQAFDSARSIDPSLALPWAGMSADTHARDPTTDEAYESCLRAVQILP 528
Query: 485 LAEFQIGLAKLAKLSGHLSSSQVFGAIQQAIQRGPHYPESHNLYGLVCEARSDYQAAVVS 544
+AEFQIGLAKLA LSGHLSSSQVFGAIQQA+Q P+YPESHNL GLVCEAR DYQ+AV S
Sbjct: 529 VAEFQIGLAKLALLSGHLSSSQVFGAIQQAVQHAPYYPESHNLNGLVCEARCDYQSAVAS 588
Query: 545 YRLARYAISSSSGTVPNSHFQDISINLARSLSRAGNALDAVRECESLERQGMLDAEVLQV 604
YRLAR AI++ SG++ SH +DIS N+ARSLS+AGNALDAV+ECE L+++G+LDA+ LQ+
Sbjct: 589 YRLARCAINTFSGSILKSHLRDISFNIARSLSKAGNALDAVQECEDLKKEGLLDAQGLQI 648
Query: 605 YAFSLWQLGKYDLALSMARNLASSVSAMEQSSAAASVSFICRLLYHISGLDSTINSILKM 664
YA SLWQ+G+ DLALS+AR+LA +S I SILKM
Sbjct: 649 YAISLWQIGENDLALSVARDLA----------------------------ESAIISILKM 680
Query: 665 PKGLFQCSKMSFIVSAIHALDHSNRLESVVSSSRNCIASPEEITGMHYLVALNKLVKNGP 724
PK LFQ SK+SF+VSAI ALD SN+LESVVSSSR +AS EEI MH LVAL KLVK G
Sbjct: 681 PKELFQNSKISFVVSAIDALDESNKLESVVSSSRYFLASHEEIARMHCLVALGKLVKQGS 740
Query: 725 ESCLGFNSGIFHLRKVLHVYPNCNLIRNLLGYLLLSSDEWRYSHVASRCCSLETSDCIKK 784
E CLGF +G+ HLRK LH++PN LIRNLLGYLLLSS E +H ASRCC ++ S K
Sbjct: 741 EHCLGFENGVHHLRKALHMFPNSVLIRNLLGYLLLSSQEGEDAHSASRCCIVDPSHSPNK 800
Query: 785 EGPKSAWEILGAEGVACNVIGSVDLKFSFPTCIYEHLTGPKAVQELQKCLHREPWNYNVR 844
EG KSA+EILGA VAC G + KFSFPTC Y ++GP A+Q+LQK LHREPWN+N R
Sbjct: 801 EGSKSAFEILGAGAVACFASGMSNQKFSFPTCRYRCMSGPGAIQQLQKWLHREPWNHNAR 860
Query: 845 YLLVLNLLQKAREERFPRHLCTILQRLIHVALSCEFYSIQHTSYQYQKFQLLLCASEISL 904
YLL+LN LQKAREERFPRHLCTI++RL VA+S Y + T QYQKFQLLLCASEISL
Sbjct: 861 YLLILNFLQKAREERFPRHLCTIIERLNFVAISNHLYLKKDTCCQYQKFQLLLCASEISL 920
Query: 905 QGGNITGCINHAKSASALLLPDAYRFFGHLLLSRAYAAEGNMLNLQDEYVRCLELKTDYV 964
QGG+ GC+NHA++AS LLLPD Y FF HL L RAY A+ + NL+ EY++CLELKTDY
Sbjct: 921 QGGDHLGCVNHAENASTLLLPDCYLFFAHLQLCRAYVAKDDFKNLRKEYIKCLELKTDYC 980
Query: 965 IGWMCLKVVESLYEVQADTNTIELSFNECLKQGNNSRLIWTAKFNLVLGFVFLWKKDFFS 1024
IGW+CLK ++ +E+Q D + EL+F EC K+ +S W A F+L+ G + + +DF
Sbjct: 981 IGWLCLKFMDPHHELQNDLSISELNFKECSKERKSSCNKWMALFDLLQGLISVQNQDFLC 1040
Query: 1025 AEKCLAQACSLAGAESCLFLCHGTICMEIARQYHDSHFLSLAVRSLTKAQKTSFVQLPVV 1084
AE+ LAQACSL+ ESC+FLCHG ICME+ARQ DS +LS A++SL KAQ+ S + LP V
Sbjct: 1041 AEEFLAQACSLSDTESCIFLCHGVICMELARQQCDSQYLSHAIKSLMKAQEISLIPLPFV 1100
Query: 1085 SLLLAQAEGSLSSIEKWEKNLRLEWFTWPPEMRPAELFFQMHLLAMLSKAGSDSSSRVEF 1144
LLAQAE S S KWEKNL LEWF+WPPE+RPAELF QMHLLA SK+GS+SSS VE
Sbjct: 1101 PTLLAQAEASRGSKAKWEKNLCLEWFSWPPEVRPAELFLQMHLLARHSKSGSESSSCVEP 1160
Query: 1145 CQSPQKWVLRAIHTNPSCLRYWKVLHKLF 1173
QS Q+WVLRAIH NPSCLRYWKVL KL
Sbjct: 1161 HQSQQRWVLRAIHLNPSCLRYWKVLQKLM 1189
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356497520|ref|XP_003517608.1| PREDICTED: uncharacterized protein LOC100779830 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1500 bits (3884), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 744/1175 (63%), Positives = 916/1175 (77%), Gaps = 9/1175 (0%)
Query: 2 DEKGA--LLLQLEDSLEANPDDPSLHLDLGLHLWENS-ESKEKAAEHFVIAAKLNPQNAV 58
+E+GA L +L+DS DD S+H D+G+ LWE E+KEKAA+HF+++AKLNP+N
Sbjct: 8 EEEGAEHLFRRLQDS----SDDASIHFDIGVFLWEKGGEAKEKAAQHFILSAKLNPKNGD 63
Query: 59 AFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREA 118
F+YLGHYY S+DTQRAIKCYQRAV L+PDDS SGEALC LL+ GGKESLEVVVCREA
Sbjct: 64 CFKYLGHYYGGVSLDTQRAIKCYQRAVVLNPDDSESGEALCNLLDQGGKESLEVVVCREA 123
Query: 119 SDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSA 178
S+ SPRAFWAFRRLG+LQ+H KKWSEAV SLQHA+RGYPT LWEALGLAY RLG F+A
Sbjct: 124 SEMSPRAFWAFRRLGFLQVHQKKWSEAVLSLQHALRGYPTCADLWEALGLAYQRLGRFTA 183
Query: 179 AIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLASGL 238
AIKSYGRAIELDDT +F L+ESGNI + LG+F KGVEQF+ AL+IS V A YGLA GL
Sbjct: 184 AIKSYGRAIELDDTMVFALVESGNISVTLGSFSKGVEQFRQALEISPRCVPAQYGLALGL 243
Query: 239 LGLAKQCINLGAFRWGASLLEDACKVAEANTRLAGNMSCIWKLHGDIQLTYAKCFPWAEE 298
LGLAK CINLGA++WGASLLE+A +VA A+ N+SCIWKLH DIQL YA+C+PW E+
Sbjct: 244 LGLAKDCINLGAYQWGASLLEEASEVARASAYFLRNISCIWKLHADIQLAYARCYPWIED 303
Query: 299 RQSLEFDVETFSASIVSWKTTCLMAAISSKSSYQRALYLAPWQANIYTDIAITSDLIYSL 358
Q LE + E FSASI+SW+ TC +AA ++ SYQRA +L+PWQANIY DIA+ SDLI SL
Sbjct: 304 VQELEANKEAFSASIISWRRTCFLAAKHARFSYQRASHLSPWQANIYADIAVISDLITSL 363
Query: 359 NEAYGHYQSAWHVSEKMALGALLLEGDNCQFWVTLGCLSNYNGLKQHALIRGLQLDVSLA 418
++ Y +AW ++EKM++GALLLEGD+ +FW+ LGCLS++N L QHALIR LQL+VSLA
Sbjct: 364 DKNYKQDINAWQLAEKMSMGALLLEGDSYEFWLALGCLSDHNALNQHALIRALQLNVSLA 423
Query: 419 DAWAHIGKLYGEVGEKKLARQAFDSARSIDPSLALPWAGMSADVQASESLVDDAFESCLR 478
AW ++GKLY +V EK+LARQ FD ARSIDP LALPWA MS + E D+AFESC R
Sbjct: 424 VAWGYLGKLYRKVDEKQLARQMFDRARSIDPGLALPWASMSFESCVGELESDEAFESCSR 483
Query: 479 AVQILPLAEFQIGLAKLAKLSGHLSSSQVFGAIQQAIQRGPHYPESHNLYGLVCEARSDY 538
AVQI+PLAEFQ+GL KLA LSGHLSSSQVFGAIQQA+Q PHYPESHNL+GLVCEAR+DY
Sbjct: 484 AVQIMPLAEFQLGLTKLALLSGHLSSSQVFGAIQQAVQLSPHYPESHNLHGLVCEARNDY 543
Query: 539 QAAVVSYRLARYAISSSSGTVPNSHFQDISINLARSLSRAGNALDAVRECESLERQGMLD 598
++A YRLAR+AI+ S ++ NSH ++ISINLARSLS+AGNA DA++ECE L+++G LD
Sbjct: 544 KSASTFYRLARHAINIGSRSIHNSHIREISINLARSLSKAGNAADALQECEHLKKEGALD 603
Query: 599 AEVLQVYAFSLWQLGKYDLALSMARNLASSVSAMEQSSAAASVSFICRLLYHISGLDSTI 658
E LQVY FSLWQLG+ DLALS+AR+LA+++S+M+++S A S+ FICRL+Y+I GLD+ I
Sbjct: 604 DEGLQVYGFSLWQLGENDLALSVARSLAATLSSMQKTSVATSICFICRLVYYIRGLDAAI 663
Query: 659 NSILKMPKGLFQCSKMSFIVSAIHALDHSNRLESVVSSSRNCIASPEEITGMHYLVALNK 718
SI+KMPK LFQ SK+SF+++AI+ALD NRL VVSSSR + EEI GMH L+AL+K
Sbjct: 664 TSIVKMPKELFQSSKVSFVMTAINALDRQNRLGFVVSSSRYFLKYHEEIAGMHLLIALSK 723
Query: 719 LVKNGPESCLGFNSGIFHLRKVLHVYPNCNLIRNLLGYLLLSSDEWRYSHVASRCCSLET 778
LVKN + CL SG+ HL+K LH++PNC+LIRNLLGYL++SS E HVA+RCC L+
Sbjct: 724 LVKNESDCCLDIQSGVAHLKKALHMFPNCSLIRNLLGYLMVSSKELNNCHVATRCCKLDH 783
Query: 779 SDCIKKEGPKSAWEILGAEGVACNVIGSVDLKFSFPTCIYEHLTGPKAVQELQKCLHREP 838
D ++G KSA +I GA VAC G+ KF+FPTC + P A++ LQKC H++P
Sbjct: 784 LDLSDQKGFKSASDIHGAGAVACYTTGNSIPKFTFPTCTKQCSNHPGAIRHLQKCFHQKP 843
Query: 839 WNYNVRYLLVLNLLQKAREERFPRHLCTILQRLIHVALSCEFYSIQHTSYQYQKFQLLLC 898
WN++ RYLLVLN LQ+ARE+RFP HLC IL RL H ALS + YS Y+Y+ FQLLLC
Sbjct: 844 WNHDSRYLLVLNYLQRAREQRFPHHLCRILNRLTHAALSNDLYSRTEMLYRYRYFQLLLC 903
Query: 899 ASEISLQGGNITGCINHAKSASALLLPDAYRFFGHLLLSRAYAAEGNMLNLQDEYVRCLE 958
ASEISLQ GN CI HAK AS L+LPD Y FF HLLL R YA +G+ L+ Q EY+RCLE
Sbjct: 904 ASEISLQCGNHMTCITHAKKASELVLPDDYLFFAHLLLCRVYAMKGDHLSFQKEYIRCLE 963
Query: 959 LKTDYVIGWMCLKVVESLYEVQADTNTIELSFNECLKQGNNSRLIWTAKFNLVLGFVFLW 1018
LKTDY IGW+CLK++E YE+Q D+NTI+L+F EC+K+ +W A +NLV G + L
Sbjct: 964 LKTDYHIGWICLKLMECQYELQIDSNTIDLNFEECVKRSGKLCNMWMAVYNLVRGMISLQ 1023
Query: 1019 KKDFFSAEKCLAQACSLAGAESCLFLCHGTICMEIARQYHDSHFLSLAVRSLTKAQKTSF 1078
K+D SAE +AQACSLAG ESCLFLCHG ICME+ RQ H S FLS A+ SLTK + S
Sbjct: 1024 KRDLVSAEDFMAQACSLAGFESCLFLCHGAICMELVRQCHGSQFLSRAINSLTKVHEHSL 1083
Query: 1079 VQLPVVSLLLAQAEGSLSSIEKWEKNLRLEWFTWPPEMRPAELFFQMHLLAMLSKAGSDS 1138
+ LP VS+L+AQAEGS S E+W +NLRLEW+ WPPEMRPAEL+FQMH+LA K G ++
Sbjct: 1084 IPLPFVSVLVAQAEGSHGSKERWNRNLRLEWYNWPPEMRPAELYFQMHMLARQLKVGPNA 1143
Query: 1139 SSRVEFCQSPQKWVLRAIHTNPSCLRYWKVLHKLF 1173
S +E QSP +WV+RAIH NPSC+RYW++L KL
Sbjct: 1144 S--IESTQSPHRWVIRAIHMNPSCMRYWRILQKLM 1176
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|334183946|ref|NP_001185412.1| superkiller protein 3-like protein [Arabidopsis thaliana] gi|332197746|gb|AEE35867.1| superkiller protein 3-like protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1439 bits (3725), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 727/1165 (62%), Positives = 897/1165 (76%), Gaps = 5/1165 (0%)
Query: 8 LLQLEDSLEANPDDPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYY 67
L QL+ S+E NPDD SL +LGL+LW+N EKAAEHFV++AK +P NAVAF+YLGHYY
Sbjct: 3 LEQLKKSVEENPDDSSLQFELGLYLWDNGGDSEKAAEHFVLSAKSDPNNAVAFKYLGHYY 62
Query: 68 TRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFW 127
+R ++D RA KCYQRAV ++P+DS SGEALC+L + GKE LE+ VCR+AS+KSP+AFW
Sbjct: 63 SRVTLDLNRAAKCYQRAVLINPNDSDSGEALCDLFDRQGKEILEIAVCRDASEKSPKAFW 122
Query: 128 AFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAI 187
AF RLGY+QLH KKWSEAVQSLQHAIRGYPT LWEALGLAY RLGMF+AAIK+YGRAI
Sbjct: 123 AFCRLGYIQLHQKKWSEAVQSLQHAIRGYPTMSDLWEALGLAYQRLGMFTAAIKAYGRAI 182
Query: 188 ELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLASGLLGLAKQCIN 247
ELD+T IF L+ES NIFLMLG++RKGVE F+ ALKIS +N+S YGLASGLL +K+CIN
Sbjct: 183 ELDETKIFALVESANIFLMLGSYRKGVELFEQALKISPQNISVLYGLASGLLSWSKECIN 242
Query: 248 LGAFRWGASLLEDACKVAEANTRLAGNMSCIWKLHGDIQLTYAKCFPWAEERQSLEFDVE 307
LGAF W ASLLEDA K A+A++ LA +MSCIWKLHGDIQLTYA+CFPW+ ++ EF ++
Sbjct: 243 LGAFGWAASLLEDARKAAKASSELASSMSCIWKLHGDIQLTYARCFPWSGGTENSEFTLK 302
Query: 308 TFSASIVSWKTTCLMAAISSKSSYQRALYLAPWQANIYTDIAITSDLIYSLNEAYGHYQS 367
TFS SI+SW++ C AA+S+K+SYQRAL+LAPWQAN+YTDIAIT DL+ SL++ S
Sbjct: 303 TFSDSILSWRSICYSAALSAKASYQRALHLAPWQANVYTDIAITCDLVSSLSDDS-DTSS 361
Query: 368 AWHVSEKMALGALLLEGDNCQFWVTLGCLSNYNGLKQHALIRGLQLDVSLADAWAHIGKL 427
+W + EKM LGALLLE +N +FWV LGC+S+ + LK HALIR L LDVSLA AWA +G++
Sbjct: 362 SWKLPEKMVLGALLLECENSEFWVALGCMSDNSALKLHALIRALHLDVSLAVAWAFMGQI 421
Query: 428 YGEVGEKKLARQAFDSARSIDPSLALPWAGMSADVQASESLVDDAFESCLRAVQILPLAE 487
+ E E K A+QAFD ARSIDP+LALPWAG SAD A ES D+AFESCLRA QI PLAE
Sbjct: 422 FRESDEMKFAKQAFDCARSIDPTLALPWAG-SADTYARESTSDEAFESCLRAAQISPLAE 480
Query: 488 FQIGLAKLAKLSGHLSSSQVFGAIQQAIQRGPHYPESHNLYGLVCEARSDYQAAVVSYRL 547
FQ+GLA LA L G++SS Q+F I+QA+QR P+YPE HNL+GLVCEAR +Y A+ SYRL
Sbjct: 481 FQVGLAWLALLQGNISSPQIFACIEQAVQRSPYYPEPHNLHGLVCEARHNYHTAIASYRL 540
Query: 548 ARYAISSSSGTVPNSHFQDISINLARSLSRAGNALDAVRECESLERQGMLDAEVLQVYAF 607
A A+S + SH +SINL RSLS+AG ++V EC +L+ +G+LDA LQ+YAF
Sbjct: 541 ALAAMSIYPESSVKSHAGKVSINLVRSLSKAGRFKESVMECANLKSKGLLDAGGLQIYAF 600
Query: 608 SLWQLGKYDLALSMARNLASSVSAMEQSSAAASVSFICRLLYHISGLDSTINSILKMPKG 667
SLW+ G+ D ALS+ R+LA +S E++S A +SFIC LLY ISGLDS I SI KMPK
Sbjct: 601 SLWRTGQNDSALSVIRDLAGRISTREKTSIAFPISFICSLLYCISGLDSAITSIQKMPKD 660
Query: 668 LFQCSKMSFIVSAIHALDHSNRLESVVSSSRNCIASPEEITGMHYLVALNKLVKNGPESC 727
FQ SK+SFIVSAIH+LD S+RL+S+V+S+R+ I S EEI MHYL+AL+KL+K G
Sbjct: 661 FFQSSKISFIVSAIHSLDQSDRLQSIVASTRSYITSQEEIVAMHYLIALSKLLKTGAGDF 720
Query: 728 LGFNSGIFHLRKVLHVYPNCNLIRNLLGYLLLSSDEWRYSHVASRCCSLETSDCIKKEGP 787
LG+ GI HL K +H+YP+ NLIRNLLGY+LL+ + + + ASRCC + S+C KEG
Sbjct: 721 LGYEKGIAHLSKAIHMYPHSNLIRNLLGYILLAGEGMKDACTASRCCIINVSECANKEGL 780
Query: 788 KSAWEILGAEGVACNVIGSVDLKFSFPTCIYEHLTGPKAVQELQKCLHREPWNYNVRYLL 847
KSA E+LG VACNVIG+ +FSFPTC ++L P V ELQ+ LH+EP N +VRYLL
Sbjct: 781 KSALEVLGGGSVACNVIGNTAPRFSFPTCHCQYLNAPVVVVELQRFLHQEPSNSSVRYLL 840
Query: 848 VLNLLQKAREERFPRHLCTILQRLIHVALSCEFYSIQHTSYQYQKFQLLLCASEISLQGG 907
+LNL+QKARE+RFPR LC ++RLI VALS E S + +Y+KFQLLLCASEISLQ G
Sbjct: 841 ILNLVQKAREQRFPRQLCRAIERLISVALSDETCSKEG---EYKKFQLLLCASEISLQMG 897
Query: 908 NITGCINHAKSASALLLPDAYRFFGHLLLSRAYAAEGNMLNLQDEYVRCLELKTDYVIGW 967
NI INHA+ AS+L LP +Y F GHL L RAYAA G+ N+Q+EY CLELKTD IGW
Sbjct: 898 NIAESINHARKASSLSLPSSYLFLGHLQLCRAYAANGSTKNMQEEYRACLELKTDSNIGW 957
Query: 968 MCLKVVESLYEVQADTNTIELSFNECLKQGNNSRLIWTAKFNLVLGFVFLWKKDFFSAEK 1027
+CLK++ES Y ++ D N +E+S EC Q NS W A ++L G KKDFFSAE+
Sbjct: 958 ICLKLIESQYNLEPDANLLEMSLQECSSQKKNSWKEWMAVYSLARGLDSTGKKDFFSAEE 1017
Query: 1028 CLAQACSLAGAESCLFLCHGTICMEIARQYHDSHFLSLAVRSLTKAQKTSFVQLPVVSLL 1087
LAQACSL +ESCL LCHG +CME+ARQ +DS FLSLAV+SL+K Q +S LP+V L
Sbjct: 1018 FLAQACSLLNSESCLLLCHGAVCMELARQSNDSQFLSLAVKSLSKVQASSLFPLPIVYTL 1077
Query: 1088 LAQAEGSLSSIEKWEKNLRLEWFTWPPEMRPAELFFQMHLLAMLSKAGSDSSSRVEFCQS 1147
LAQA GSL S EKWEKNLRLEWF WPPEMRPAE++FQMH+LA S+ +++S +E QS
Sbjct: 1078 LAQAHGSLGSKEKWEKNLRLEWFCWPPEMRPAEVYFQMHILARQSEDRPETTSGIENYQS 1137
Query: 1148 PQKWVLRAIHTNPSCLRYWKVLHKL 1172
P+KWV+RAIHT+PSC RYWKVL KL
Sbjct: 1138 PEKWVIRAIHTDPSCRRYWKVLDKL 1162
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449485236|ref|XP_004157108.1| PREDICTED: tetratricopeptide repeat protein 37-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1402 bits (3630), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 707/1166 (60%), Positives = 871/1166 (74%), Gaps = 9/1166 (0%)
Query: 10 QLEDSLEANPDDPSLHLDLGLHLWENSESKEKAA--EHFVIAAKLNPQNAVAFRYLGHYY 67
QL+++++A+PDDPS H LG+ +WEN S +KAA +HF+ +AKL+P NA AF+YLG YY
Sbjct: 33 QLQEAVDAHPDDPSSHFKLGIFMWENGASHDKAAAADHFLKSAKLDPGNAAAFKYLGDYY 92
Query: 68 TRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFW 127
S+D QRA+KCYQRAVSL DD SGEALC+LL H GKES+EV VC+EAS KSP+AFW
Sbjct: 93 ATSSVDIQRALKCYQRAVSLDVDDFHSGEALCDLLHHEGKESIEVAVCKEASSKSPKAFW 152
Query: 128 AFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAI 187
AFRRLGYLQ++ KW+EAV SLQHAIRGYP LWEALGLAY RLG F+AAIKSY RAI
Sbjct: 153 AFRRLGYLQVYQNKWTEAVSSLQHAIRGYPHCADLWEALGLAYQRLGRFTAAIKSYARAI 212
Query: 188 ELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLASGLLGLAKQCIN 247
E++ I +ESGNIFLMLG F+KGVE FQ AL+IS ++++A +GL+SGLLG AK+ IN
Sbjct: 213 EIEGDRILAWIESGNIFLMLGLFKKGVEHFQQALEISPKSITAQFGLSSGLLGWAKEYIN 272
Query: 248 LGAFRWGASLLEDACKVAEANTRLAGNMSCIWKLHGDIQLTYAKCFPWAEERQSLEFDVE 307
GAF+W + LLE+A KVA +T LAGN SCIWKL GDIQ TYAKC+PW E+ E
Sbjct: 273 RGAFKWASFLLEEASKVARGSTHLAGNSSCIWKLLGDIQHTYAKCYPWMEDNWGQ--CSE 330
Query: 308 TFSASIVSWKTTCLMAAISSKSSYQRALYLAPWQANIYTDIAITSDLIYSLNEAYGHYQS 367
+F SI+SWK T ++A S+KSSYQ+AL+LAPW+ANIYTDIAIT D I S N+ G +
Sbjct: 331 SFRTSILSWKQTRMLALFSAKSSYQQALHLAPWEANIYTDIAITLDNISSFNDNSGPGFN 390
Query: 368 AWHVSEKMALGALLLEGDNCQFWVTLGCLSNYNGLKQHALIRGLQLDVSLADAWAHIGKL 427
+W +SEKM LGAL+LEGDN +FWV +GC+SN+ LKQHA IR LQLD SLA AWA++GKL
Sbjct: 391 SWQISEKMTLGALMLEGDNHEFWVAMGCISNHAALKQHAFIRALQLDGSLAGAWAYLGKL 450
Query: 428 YGEVGEKKLARQAFDSARSIDPSLALPWAGMSADVQASESLVDDAFESCLRAVQILPLAE 487
Y EK+LARQAFD ARSIDPSLALPWAGMSAD+ ES D+AFESCLRA QILP+AE
Sbjct: 451 YWNRCEKQLARQAFDYARSIDPSLALPWAGMSADLNVRESTSDEAFESCLRAAQILPVAE 510
Query: 488 FQIGLAKLAKLSGHLSSSQVFGAIQQAIQRGPHYPESHNLYGLVCEARSDYQAAVVSYRL 547
FQIGLAKL+ +GHLSS QVFGAI+QA+Q P YPES+NL GL EA+ DYQ+AV +YRL
Sbjct: 511 FQIGLAKLSLQAGHLSSPQVFGAIRQAVQLAPCYPESYNLNGLAFEAQLDYQSAVAAYRL 570
Query: 548 ARYAISSSSGTVPNSHFQDISINLARSLSRAGNALDAVRECESLERQGMLDAEVLQVYAF 607
A IS S VP SH +DISINLARSL GN +A++ECE+L +GMLD E LQVYAF
Sbjct: 571 AHLTISHFSDRVPRSHVRDISINLARSLCMVGNFFEALQECENLSTEGMLDIEGLQVYAF 630
Query: 608 SLWQLGKYDLALSMARNLASSVSAMEQSSAAASVSFICRLLYHISGLDSTINSILKMPKG 667
SLW+LGK D ALS R LAS +S ME + AAS+ FICRLL ISGLDS INSI KMP
Sbjct: 631 SLWKLGKNDQALSAVRTLASGISTMESTRTAASIDFICRLLCSISGLDSAINSITKMPTN 690
Query: 668 LFQCSKMSFIVSAIHALDHSNRLESVVSSSRNCIASPEEITGMHYLVALNKLVKNGPESC 727
FQ SK+SF+V+A+HALD +RLE++V SSR+C+ S EEIT MH L+AL+KL+K +C
Sbjct: 691 FFQSSKLSFVVAAVHALDQGDRLEAIVLSSRSCLQSHEEITRMHSLIALSKLIKYRTNNC 750
Query: 728 LGFNSGIFHLRKVLHVYPNCNLIRNLLGYLLLSSDEWRYSHVASRCCSLETSDCIKKEGP 787
LGF +G+ HLRK LH YP+ + IRNLLGYLLLS++E +H A+RCC++ + +G
Sbjct: 751 LGFLNGVMHLRKALHAYPSSSSIRNLLGYLLLSNEERDDNHTATRCCNMLYGLDQQNKGL 810
Query: 788 KSAWEILGAEGVACNVIGSVDLKFSFPTCIYEHLTGPKAVQELQKCLHREPWNYNVRYLL 847
KSA+EI GA VAC IG+ +FSFPTC Y+ G +++LQKCL +EPWNY+ RYLL
Sbjct: 811 KSAYEIHGAGAVACYTIGTSHPRFSFPTCSYQCRNGIGTIRQLQKCLRQEPWNYDARYLL 870
Query: 848 VLNLLQKAREERFPRHLCTILQRLIHVALSCEFYSIQHTSYQYQKFQLLLCASEISLQGG 907
+LN+LQKAREERFP HLC + RLI VA E Y + S+QY+KFQLLLCASEISLQGG
Sbjct: 871 ILNILQKAREERFPCHLCVTIGRLILVAFFDEAYFTKDVSHQYKKFQLLLCASEISLQGG 930
Query: 908 NITGCINHAKSASALLLPDAYRFFGHLLLSRAYAAEGNMLNLQDEYVRCLELKTDYVIGW 967
+ CIN+AK+AS++ LP+ Y F+ HLLL RAYAAE + NL+ E+++CL LKTD +G
Sbjct: 931 DQIKCINYAKAASSMSLPEIYLFYAHLLLCRAYAAENDSNNLRKEFMKCLNLKTDNYLGC 990
Query: 968 MCLKVVESLYEVQADTNTIELSFNECLKQGNNSRLIWTAKFNLVLGFVFLWKKDFFSAEK 1027
+CLK + S YE+ ++N +ELS + + N + + F V G + +DF +AEK
Sbjct: 991 VCLKFIASRYELHDESNILELSLKKWSAESKNLQHMVIPMF--VDGLISFRSQDFMAAEK 1048
Query: 1028 CLAQACSLAGAESCLFLCHGTICMEIARQYHDSHFLSLAVRSLTKAQKTSFVQLPVVSLL 1087
AQAC +G + CLFLCHG CME+A++ HFL LAV SL KAQ S V +P+VS++
Sbjct: 1049 YFAQAC-FSGHDGCLFLCHGVTCMELAKKLCSPHFLRLAVNSLLKAQVIS-VPIPIVSIM 1106
Query: 1088 LAQAEGSLSSIEKWEKNLRLEWFTWPPEMRPAELFFQMHLLAMLSKAGSDSSSRVEFCQS 1147
LAQAEGSL E WE LRLEWF+WPP+ R AE+ FQMHLLA SK SD RVE CQS
Sbjct: 1107 LAQAEGSLGLKENWESGLRLEWFSWPPDTRSAEILFQMHLLAKQSKVDSD-QLRVELCQS 1165
Query: 1148 PQKWVLRAIHTNPSCLRYWKVLHKLF 1173
P +WVLRAIH NPSC+RYW VL L+
Sbjct: 1166 PLRWVLRAIHVNPSCVRYWNVLQSLW 1191
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|334183944|ref|NP_177789.2| superkiller protein 3-like protein [Arabidopsis thaliana] gi|332197745|gb|AEE35866.1| superkiller protein 3-like protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1396 bits (3614), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 712/1165 (61%), Positives = 878/1165 (75%), Gaps = 33/1165 (2%)
Query: 8 LLQLEDSLEANPDDPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYY 67
L QL+ S+E NPDD SL +LGL+LW+N EKAAEHFV++AK +P NAVAF+YLGHYY
Sbjct: 3 LEQLKKSVEENPDDSSLQFELGLYLWDNGGDSEKAAEHFVLSAKSDPNNAVAFKYLGHYY 62
Query: 68 TRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFW 127
+R ++D RA KCYQRAV ++P+DS SGEALC+L + GKE LE+ VCR+AS+KSP+AFW
Sbjct: 63 SRVTLDLNRAAKCYQRAVLINPNDSDSGEALCDLFDRQGKEILEIAVCRDASEKSPKAFW 122
Query: 128 AFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAI 187
AF RLGY+QLH KKWSEAVQSLQHAIRGYPT LWEALGLAY RLGMF+AAIK+YGRAI
Sbjct: 123 AFCRLGYIQLHQKKWSEAVQSLQHAIRGYPTMSDLWEALGLAYQRLGMFTAAIKAYGRAI 182
Query: 188 ELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLASGLLGLAKQCIN 247
ELD+T IF L+ES NIFLMLG++RKGVE F+ ALKIS +N+S YGLASGLL +K+CIN
Sbjct: 183 ELDETKIFALVESANIFLMLGSYRKGVELFEQALKISPQNISVLYGLASGLLSWSKECIN 242
Query: 248 LGAFRWGASLLEDACKVAEANTRLAGNMSCIWKLHGDIQLTYAKCFPWAEERQSLEFDVE 307
LGAF W ASLLEDA K A+A++ LA +MSCIWKLHGDIQLTYA+CFPW+ ++ EF ++
Sbjct: 243 LGAFGWAASLLEDARKAAKASSELASSMSCIWKLHGDIQLTYARCFPWSGGTENSEFTLK 302
Query: 308 TFSASIVSWKTTCLMAAISSKSSYQRALYLAPWQANIYTDIAITSDLIYSLNEAYGHYQS 367
TFS SI+SW++ C AA+S+K+SYQRAL+LAPWQAN+YTDIAIT DL+ SL++ S
Sbjct: 303 TFSDSILSWRSICYSAALSAKASYQRALHLAPWQANVYTDIAITCDLVSSLSDDS-DTSS 361
Query: 368 AWHVSEKMALGALLLEGDNCQFWVTLGCLSNYNGLKQHALIRGLQLDVSLADAWAHIGKL 427
+W + EKM LGALLLE +N +FWV LGC+S+ + LK HALIR L LDVSLA AWA +G++
Sbjct: 362 SWKLPEKMVLGALLLECENSEFWVALGCMSDNSALKLHALIRALHLDVSLAVAWAFMGQI 421
Query: 428 YGEVGEKKLARQAFDSARSIDPSLALPWAGMSADVQASESLVDDAFESCLRAVQILPLAE 487
+ E E K A+QAFD ARSIDP+LALPWAG SAD A ES D+AFESCLRA QI PLAE
Sbjct: 422 FRESDEMKFAKQAFDCARSIDPTLALPWAG-SADTYARESTSDEAFESCLRAAQISPLAE 480
Query: 488 FQIGLAKLAKLSGHLSSSQVFGAIQQAIQRGPHYPESHNLYGLVCEARSDYQAAVVSYRL 547
FQ+GLA LA L G++SS Q+F I+QA+QR P+YPE HNL+GLVCEAR +Y A+ SYRL
Sbjct: 481 FQVGLAWLALLQGNISSPQIFACIEQAVQRSPYYPEPHNLHGLVCEARHNYHTAIASYRL 540
Query: 548 ARYAISSSSGTVPNSHFQDISINLARSLSRAGNALDAVRECESLERQGMLDAEVLQVYAF 607
A A+S + SH +SINL RSLS+AG ++V EC +L+ +G+LDA LQ+YAF
Sbjct: 541 ALAAMSIYPESSVKSHAGKVSINLVRSLSKAGRFKESVMECANLKSKGLLDAGGLQIYAF 600
Query: 608 SLWQLGKYDLALSMARNLASSVSAMEQSSAAASVSFICRLLYHISGLDSTINSILKMPKG 667
SLW+ G+ D ALS+ R+LA DS I SI KMPK
Sbjct: 601 SLWRTGQNDSALSVIRDLA----------------------------DSAITSIQKMPKD 632
Query: 668 LFQCSKMSFIVSAIHALDHSNRLESVVSSSRNCIASPEEITGMHYLVALNKLVKNGPESC 727
FQ SK+SFIVSAIH+LD S+RL+S+V+S+R+ I S EEI MHYL+AL+KL+K G
Sbjct: 633 FFQSSKISFIVSAIHSLDQSDRLQSIVASTRSYITSQEEIVAMHYLIALSKLLKTGAGDF 692
Query: 728 LGFNSGIFHLRKVLHVYPNCNLIRNLLGYLLLSSDEWRYSHVASRCCSLETSDCIKKEGP 787
LG+ GI HL K +H+YP+ NLIRNLLGY+LL+ + + + ASRCC + S+C KEG
Sbjct: 693 LGYEKGIAHLSKAIHMYPHSNLIRNLLGYILLAGEGMKDACTASRCCIINVSECANKEGL 752
Query: 788 KSAWEILGAEGVACNVIGSVDLKFSFPTCIYEHLTGPKAVQELQKCLHREPWNYNVRYLL 847
KSA E+LG VACNVIG+ +FSFPTC ++L P V ELQ+ LH+EP N +VRYLL
Sbjct: 753 KSALEVLGGGSVACNVIGNTAPRFSFPTCHCQYLNAPVVVVELQRFLHQEPSNSSVRYLL 812
Query: 848 VLNLLQKAREERFPRHLCTILQRLIHVALSCEFYSIQHTSYQYQKFQLLLCASEISLQGG 907
+LNL+QKARE+RFPR LC ++RLI VALS E S + +Y+KFQLLLCASEISLQ G
Sbjct: 813 ILNLVQKAREQRFPRQLCRAIERLISVALSDETCSKEG---EYKKFQLLLCASEISLQMG 869
Query: 908 NITGCINHAKSASALLLPDAYRFFGHLLLSRAYAAEGNMLNLQDEYVRCLELKTDYVIGW 967
NI INHA+ AS+L LP +Y F GHL L RAYAA G+ N+Q+EY CLELKTD IGW
Sbjct: 870 NIAESINHARKASSLSLPSSYLFLGHLQLCRAYAANGSTKNMQEEYRACLELKTDSNIGW 929
Query: 968 MCLKVVESLYEVQADTNTIELSFNECLKQGNNSRLIWTAKFNLVLGFVFLWKKDFFSAEK 1027
+CLK++ES Y ++ D N +E+S EC Q NS W A ++L G KKDFFSAE+
Sbjct: 930 ICLKLIESQYNLEPDANLLEMSLQECSSQKKNSWKEWMAVYSLARGLDSTGKKDFFSAEE 989
Query: 1028 CLAQACSLAGAESCLFLCHGTICMEIARQYHDSHFLSLAVRSLTKAQKTSFVQLPVVSLL 1087
LAQACSL +ESCL LCHG +CME+ARQ +DS FLSLAV+SL+K Q +S LP+V L
Sbjct: 990 FLAQACSLLNSESCLLLCHGAVCMELARQSNDSQFLSLAVKSLSKVQASSLFPLPIVYTL 1049
Query: 1088 LAQAEGSLSSIEKWEKNLRLEWFTWPPEMRPAELFFQMHLLAMLSKAGSDSSSRVEFCQS 1147
LAQA GSL S EKWEKNLRLEWF WPPEMRPAE++FQMH+LA S+ +++S +E QS
Sbjct: 1050 LAQAHGSLGSKEKWEKNLRLEWFCWPPEMRPAEVYFQMHILARQSEDRPETTSGIENYQS 1109
Query: 1148 PQKWVLRAIHTNPSCLRYWKVLHKL 1172
P+KWV+RAIHT+PSC RYWKVL KL
Sbjct: 1110 PEKWVIRAIHTDPSCRRYWKVLDKL 1134
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297839541|ref|XP_002887652.1| tetratricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297333493|gb|EFH63911.1| tetratricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 1301 bits (3368), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 667/1121 (59%), Positives = 818/1121 (72%), Gaps = 60/1121 (5%)
Query: 8 LLQLEDSLEANPDDPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYY 67
L QL+ S+E NPDD SL +LGLHLW+N EKAAEHFV++AKLNP NA AF+YLGHYY
Sbjct: 3 LDQLKKSVEENPDDSSLQFELGLHLWDNGGDSEKAAEHFVLSAKLNPNNAAAFKYLGHYY 62
Query: 68 TRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFW 127
+R ++D RA KCYQRAV ++P+DS SGEALC+L + GKE LE+ VCR+AS+KSP+AFW
Sbjct: 63 SRVTLDLNRAAKCYQRAVLINPNDSDSGEALCDLFDRQGKEILEIAVCRDASEKSPKAFW 122
Query: 128 AFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAI 187
AF RLGY+QLH KKWSEAVQSLQHAIRGYPT LWEALGLAY RLGMF+AAIK+YGRAI
Sbjct: 123 AFCRLGYIQLHQKKWSEAVQSLQHAIRGYPTVSDLWEALGLAYQRLGMFTAAIKAYGRAI 182
Query: 188 ELDDTSIFPLLESGNIFLMLGNFRK-----GVEQFQLALKISSENVSAHYGLASGLLGLA 242
ELD+T IF L+ES NIFLMLG++RK GVE F+ ALKIS +N+S YGLASGLL +
Sbjct: 183 ELDETKIFALVESANIFLMLGSYRKVTFLSGVELFEQALKISPQNISVLYGLASGLLSWS 242
Query: 243 KQCINLGAFRWGASLLEDACKVAEANTRLAGNMSCIWKLHGDIQLTYAKCFPWAEERQSL 302
K+CINLGAF W ASLLEDA K A+A++ LA +MSCIWKLHGDIQLTYA+CFPW+ ++
Sbjct: 243 KECINLGAFGWAASLLEDARKAAKASSELASSMSCIWKLHGDIQLTYARCFPWSGGTENS 302
Query: 303 EFDVETFSASIVSWKTTCLMAAISSKSSYQRALYLAPWQANIYTDIAITSDLIYSLNEAY 362
EF ++TFS SI+SW++ C AA+S+K+SYQRAL+LAPWQAN+YTDIAI DL+ SL++
Sbjct: 303 EFTLKTFSDSILSWRSICYSAALSAKASYQRALHLAPWQANVYTDIAIACDLVSSLSDDS 362
Query: 363 GHYQSAWHVSEKMALGALLLEGDNCQFWVTLGCLSNYNGLKQHALIRGLQLDVSLADAWA 422
S+W + EKMALGALLLE +N +FWV LGC+S+ + LK HALIR L LDVSLA AWA
Sbjct: 363 -DTSSSWKLPEKMALGALLLECENSEFWVALGCMSDNSALKLHALIRALHLDVSLAVAWA 421
Query: 423 HIGKLYGEVGEKKLARQAFDSARSIDPSLALPWAGMSADVQASESLVDDAFESCLRAVQI 482
+G+++ E E K A+QAFD ARSIDP+LALPWAG SAD A ES D+AFESCLRA QI
Sbjct: 422 FMGQIFRESDEMKFAKQAFDCARSIDPTLALPWAG-SADTYARESTSDEAFESCLRAAQI 480
Query: 483 LPLAEFQIGLAKLAKLSGHLSSSQVFGAIQQAIQRGPHYPESHNLYGLVCEARSDYQAAV 542
P +F I+QA+QR P+YPESHNL+GLVCEAR +Y A+
Sbjct: 481 SP----------------------IFACIEQAVQRTPYYPESHNLHGLVCEARHNYHTAI 518
Query: 543 VSYRLARYAISSSSGTVPNSHFQDISINLARSLSRAGNALDAVRECESLERQGMLDAEVL 602
SYRLA A+S + SH +SINL RSLS+AG ++V EC +L+ +G+LDA L
Sbjct: 519 ASYRLALAAMSIYPDNLVKSHAGKVSINLIRSLSKAGRFKESVMECANLKSKGLLDAGGL 578
Query: 603 QVYAFSLWQLGKYDLALSMARNLASSVSAMEQSSAAASVSFICRLLYHISGLDSTINSIL 662
Q+YAFSLW+ G+ D ALS+ R+LA DS I SI
Sbjct: 579 QIYAFSLWKTGQNDSALSVIRDLA----------------------------DSAITSIQ 610
Query: 663 KMPKGLFQCSKMSFIVSAIHALDHSNRLESVVSSSRNCIASPEEITGMHYLVALNKLVKN 722
KMPK FQ SK+SFIVSAIH+LD S+RL+S+V+S+R+ I S EEI MHYL+AL+KL+K
Sbjct: 611 KMPKDFFQSSKISFIVSAIHSLDLSDRLQSIVASTRSYITSQEEIVAMHYLIALSKLLKT 670
Query: 723 GPESCLGFNSGIFHLRKVLHVYPNCNLIRNLLGYLLLSSDEWRYSHVASRCCSLETSDCI 782
G LGF GI HLRK +H+YP+ NLIRNLLGY+LL+ + + + ASRCC + SDC
Sbjct: 671 GAGDFLGFEKGIAHLRKAIHMYPHSNLIRNLLGYILLAGEGMKDACTASRCCIINVSDCA 730
Query: 783 KKEGPKSAWEILGAEGVACNVIGSVDLKFSFPTCIYEHLTGPKAVQELQKCLHREPWNYN 842
KEG KSA E+LG VACNVIG+ +FSFPTC ++L P V ELQ+ LH+EPWN +
Sbjct: 731 NKEGLKSALEVLGGGSVACNVIGNTAPRFSFPTCHCQYLNAPVVVVELQRFLHQEPWNSD 790
Query: 843 VRYLLVLNLLQKAREERFPRHLCTILQRLIHVALSCEFYSIQHTSYQYQKFQLLLCASEI 902
VRYLL+LNL+QKARE+RFPR LC+ ++RLI VALS E S + +YQKFQLLLCASEI
Sbjct: 791 VRYLLILNLVQKAREQRFPRQLCSAIERLISVALSDETCSKE---CEYQKFQLLLCASEI 847
Query: 903 SLQGGNITGCINHAKSASALLLPDAYRFFGHLLLSRAYAAEGNMLNLQDEYVRCLELKTD 962
SLQ GNI I HA AS+L LP +Y F GHL L RAYAA+G+ N+Q+EY CLELKTD
Sbjct: 848 SLQKGNIAESIAHAGKASSLSLPRSYLFLGHLQLCRAYAAKGSTRNMQEEYRACLELKTD 907
Query: 963 YVIGWMCLKVVESLYEVQADTNTIELSFNECLKQGNNSRLIWTAKFNLVLGFVFLWKKDF 1022
IGW+CLK++ES Y+++ D N +E+S EC Q NS W ++L G KKDF
Sbjct: 908 SNIGWICLKLIESQYDLEPDANLLEMSLQECSSQKKNSWKEWMGVYSLARGLDSNGKKDF 967
Query: 1023 FSAEKCLAQACSLAGAESCLFLCHGTICMEIARQYHDSHFLSLAVRSLTKAQKTSFVQLP 1082
SAE+ LAQACSL +ESCL LCHG +CME+ARQ +DS FLSLAV+SL+K Q +S + LP
Sbjct: 968 SSAEEFLAQACSLLNSESCLLLCHGAVCMELARQSNDSQFLSLAVKSLSKVQASSLIPLP 1027
Query: 1083 VVSLLLAQAEGSLSSIEKWEKNLRLEWFTWPPEMRPAELFF 1123
+V LLAQA GSL S EKWEKNLRLEWF WPP + L F
Sbjct: 1028 IVYTLLAQAHGSLGSKEKWEKNLRLEWFCWPPGLTAIVLIF 1068
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|115483264|ref|NP_001065302.1| Os10g0548200 [Oryza sativa Japonica Group] gi|110289525|gb|ABB47960.2| TPR Domain containing protein, expressed [Oryza sativa Japonica Group] gi|113639834|dbj|BAF27139.1| Os10g0548200 [Oryza sativa Japonica Group] gi|215737243|dbj|BAG96172.1| unnamed protein product [Oryza sativa Japonica Group] gi|222613221|gb|EEE51353.1| hypothetical protein OsJ_32362 [Oryza sativa Japonica Group] | Back alignment and taxonomy information |
|---|
Score = 1189 bits (3075), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 605/1183 (51%), Positives = 804/1183 (67%), Gaps = 22/1183 (1%)
Query: 10 QLEDSLEANPDDPSLHLDLGLHLWENSESKEKAAEHFVIAA---------------KLNP 54
QLE +L P P H +LG+ LW+ +E+ + KL+P
Sbjct: 13 QLEQTLAGEPSSPLHHYNLGVFLWDRAEAAAREEGEEEEEVRRLRAAAAERFLAAAKLDP 72
Query: 55 QNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVV 114
+ V FR+LGH+Y + D QRA KCYQRA +L+PDD+ +GEA+C+LL+ GKESLE+ +
Sbjct: 73 NDGVPFRFLGHHYA-LAGDAQRAAKCYQRAATLNPDDAEAGEAVCDLLDLEGKESLEIAL 131
Query: 115 CREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLG 174
C+EA+ KSPRAFWAFRRLGYLQ+H KKWSEA+QSLQ+AIRGYPT LWEALGLAYHRLG
Sbjct: 132 CKEAAGKSPRAFWAFRRLGYLQVHQKKWSEAIQSLQYAIRGYPTCADLWEALGLAYHRLG 191
Query: 175 MFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGL 234
MF+AA+KSYGRA+ELD + +F L+ESGNI LMLG FRKGVEQF+ AL+++ +N SA++GL
Sbjct: 192 MFTAAVKSYGRAVELDGSKVFALIESGNIQLMLGYFRKGVEQFRSALEMAPQNHSAYFGL 251
Query: 235 ASGLLGLAKQCINLGAFRWGASLLEDACKVAEANTRLAGNMSCIWKLHGDIQLTYAKCFP 294
AS LL A+QC+ GAF W ASLL++ACK A+ T L GN+SC+WKLHGD QL A+CFP
Sbjct: 252 ASALLAWARQCVMTGAFGWAASLLKEACKAAKVCTSLTGNLSCVWKLHGDAQLALARCFP 311
Query: 295 WAEERQSLEFDVETFSASIVSWKTTCLMAAISSKSSYQRALYLAPWQANIYTDIAITSDL 354
W + D TF +++ W+ TCL+AA +K SYQRAL+L PW+ANI+ D AI DL
Sbjct: 312 WGDGNIKGGMDDGTFRTTVLEWRNTCLLAANGAKFSYQRALHLTPWEANIHNDTAICLDL 371
Query: 355 IYSLNEAYGHYQSAWHVSEKMALGALLLEGDNCQFWVTLGCLSNYNGLKQHALIRGLQLD 414
IY++ E W + EKM+LG L+LE N FWVTLG +S+ LKQH+ IR L LD
Sbjct: 372 IYTIEENNSLDPITWELPEKMSLGGLILEPVNKDFWVTLGSVSSNQALKQHSFIRALHLD 431
Query: 415 VSLADAWAHIGKLYGEVGEKKLARQAFDSARSIDPSLALPWAGMSADV--QASESLVDDA 472
+SL++AWA++GK+Y G+K+LARQAFD ARSIDPSLALPWAGMSA+ Q + V++
Sbjct: 432 MSLSEAWAYLGKIYRHSGDKQLARQAFDRARSIDPSLALPWAGMSAENYHQPGDGPVNEC 491
Query: 473 FESCLRAVQILPLAEFQIGLAKLAKLSGHLSSSQVFGAIQQAIQRGPHYPESHNLYGLVC 532
FESCLRAVQILPL EFQIGL +A SG L S QV A++QA+QR PHYPESHN+ GLV
Sbjct: 492 FESCLRAVQILPLPEFQIGLGTIAARSGELLSPQVLMAVRQAVQRAPHYPESHNINGLVS 551
Query: 533 EARSDYQAAVVSYRLARYAIS--SSSGTVPNSHFQDISINLARSLSRAGNALDAVRECES 590
E RSD+Q+A+ SYR A++A+ +S T H DIS+NLARSL + G A +AVRECE
Sbjct: 552 EVRSDFQSAIASYRQAKFALDMMRNSKTDCRCHIADISVNLARSLCKTGLATEAVRECEE 611
Query: 591 LERQGMLDAEVLQVYAFSLWQLGKYDLALSMARNLASSVSAMEQSSAAASVSFICRLLYH 650
L+RQG L+ + LQ+YA SLW+LG++D ALS++RNLA ++S+M+Q SA A++ FIC L Y+
Sbjct: 612 LKRQGFLNDDGLQIYALSLWKLGRHDEALSVSRNLAENLSSMKQESATAALGFICTLTYN 671
Query: 651 ISGLDSTINSILKMPKGLFQCSKMSFIVSAIHALDHSNRLESVVSSSRNCIASPEEITGM 710
ISG DS I K+P L +++ FI+SA+ AL + R + S + S E ++ +
Sbjct: 672 ISGKDSAAAVIHKLPGQLNYSTQLKFIISALDALQPNKRFQLPQLSMPPRLTSYEVMSEV 731
Query: 711 HYLVALNKLVKNGPESCLGFNSGIFHLRKVLHVYPNCNLIRNLLGYLLLSSDEWRYSHVA 770
H +AL + + L + G+ +L+KVLH+YP+C+L+RN LG LLLSS++W SH A
Sbjct: 732 HSNIALGNAIGGESDKFLRVDGGLSYLKKVLHMYPDCSLVRNQLGSLLLSSEDWMASHKA 791
Query: 771 SRCCSLETSDCIKKEGPKSAWEILGAEGVACNVIGSVDLKFSFPTCIYEHLTGPKAVQEL 830
R SL + G +S +I V+C + KFSFPTC ++L+G A+ L
Sbjct: 792 VRVTSL-SRGYTSNRGLRSPHQIQACAAVSCYATCTSYPKFSFPTCEDQYLSGYNAICRL 850
Query: 831 QKCLHREPWNYNVRYLLVLNLLQKAREERFPRHLCTILQRLIHVALSCEFYSIQHTSYQY 890
Q+ +H EPWN + R LLVL L QKAREE++P+H+CTIL+RLI LS S + QY
Sbjct: 851 QRWVHLEPWNQDARRLLVLTLFQKAREEKYPKHICTILKRLILQVLSSGSNSQDNKVVQY 910
Query: 891 QKFQLLLCASEISLQGGNITGCINHAKSASALLLPDAYRFFGHLLLSRAYAAEGNMLNLQ 950
+ LLL ASE+SLQ G+ CI A A + FF HL L RAY +GN+LN +
Sbjct: 911 GNYLLLLVASEVSLQSGDHGNCIAQATEALGVTSSSVDSFFAHLQLCRAYVMQGNLLNSR 970
Query: 951 DEYVRCLELKTDYVIGWMCLKVVESLYEVQADTNTIELSFNECLKQGNNSRLIWTAKFNL 1010
EY++CL+ +TD IGW+ LK + S+ ++ + IE+ C+++ ++ W + F L
Sbjct: 971 SEYMKCLQNRTDTEIGWVILKQLASICSLEGTPDEIEIHLGGCVERKGSNASKWMSLFYL 1030
Query: 1011 VLGFVFLWKKDFFSAEKCLAQACSLAGAESCLFLCHGTICMEIARQYHDSHFLSLAVRSL 1070
+W +DF SAEK +AQAC+ +SC+ +G ICM+IA ++ F++ A SL
Sbjct: 1031 ACAQCSVWNEDFASAEKAIAQACAEGDPDSCVLFLNGAICMDIAWRFAAPQFIARAASSL 1090
Query: 1071 TKAQKTSFVQLPVVSLLLAQAEGSLSSIEKWEKNLRLEWFTWPPEMRPAELFFQMHLLAM 1130
KAQ+ S LP+VSLLLAQAEGSL S KWEKNLRLEWF+WPPE+RPAEL+FQMHLLA
Sbjct: 1091 RKAQQKSLASLPIVSLLLAQAEGSLGSKAKWEKNLRLEWFSWPPELRPAELYFQMHLLAT 1150
Query: 1131 LSKAGSDSSSR-VEFCQSPQKWVLRAIHTNPSCLRYWKVLHKL 1172
S A + ++ VE Q+P+KW+LRAIH NPSC RYW L +L
Sbjct: 1151 QSSAATSQQNQLVETMQTPEKWLLRAIHLNPSCSRYWTALMQL 1193
|
Source: Oryza sativa Japonica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|242035181|ref|XP_002464985.1| hypothetical protein SORBIDRAFT_01g029925 [Sorghum bicolor] gi|241918839|gb|EER91983.1| hypothetical protein SORBIDRAFT_01g029925 [Sorghum bicolor] | Back alignment and taxonomy information |
|---|
Score = 1172 bits (3032), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 603/1180 (51%), Positives = 806/1180 (68%), Gaps = 23/1180 (1%)
Query: 10 QLEDSLEANPDDPSLHLDLGLHLWENSESKEK------------AAEHFVIAAKLNPQNA 57
QLE +L A P P +LG+ LW+ +E++++ A+EHF+ AAKLNP +
Sbjct: 13 QLEQTLAAEPSSPLHQYNLGVFLWDRAEAEQEGDGEEARKLRAAASEHFLAAAKLNPNDG 72
Query: 58 VAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCRE 117
V FR+LGH+Y D QRA KCYQRAV+L+PDD+ +GE LC+LL+ GKESLE+ VC+E
Sbjct: 73 VPFRFLGHHYAHGG-DNQRAAKCYQRAVTLNPDDAEAGETLCDLLDVEGKESLELAVCKE 131
Query: 118 ASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFS 177
A+ KSPRAFWAFRRLGYLQ+H +KWSEA+QSLQ+AIRGYPT LWEALGLAYHRLGMF+
Sbjct: 132 AAGKSPRAFWAFRRLGYLQVHQRKWSEAIQSLQNAIRGYPTCADLWEALGLAYHRLGMFT 191
Query: 178 AAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLASG 237
AA+KSYGRAIELD + +F L+ESGNI LMLG FRKGVEQF+ AL+++ N SA++GLAS
Sbjct: 192 AAVKSYGRAIELDSSRVFALIESGNIQLMLGYFRKGVEQFRSALEMAPCNHSAYFGLASA 251
Query: 238 LLGLAKQCINLGAFRWGASLLEDACKVAEANTRLAGNMSCIWKLHGDIQLTYAKCFPWAE 297
LL A+ CI +GAF W ASLL++A + + T GN+SC+WKLHGD+QLT A+CFPW +
Sbjct: 252 LLAWARNCITIGAFGWAASLLKEASEASRICTSFTGNLSCVWKLHGDVQLTLARCFPWVD 311
Query: 298 ERQSLEFDVETFSASIVSWKTTCLMAAISSKSSYQRALYLAPWQANIYTDIAITSDLIYS 357
+ D + F S+ W+ TCL AA +K SYQRAL+L PW+AN++ D+AI DLI S
Sbjct: 312 GKIKRGMDAQMFKDSVKEWRNTCLSAANGAKLSYQRALHLTPWEANVHNDMAICLDLICS 371
Query: 358 LNEAYGHYQSAWHVSEKMALGALLLEGDNCQFWVTLGCLSNYNGLKQHALIRGLQLDVSL 417
++++ + W + EKM+LGAL+LE N FWVTLG +S+Y LKQH+ IR L LD+SL
Sbjct: 372 MDDSNILNPNVWELPEKMSLGALMLEPVNKDFWVTLGSMSSYLALKQHSFIRALHLDMSL 431
Query: 418 ADAWAHIGKLYGEVGEKKLARQAFDSARSIDPSLALPWAGMSADV--QASESLVDDAFES 475
++AWA +GK+Y + G+K+LA+QAFD ARSIDPSLALPWAGMSA+ Q+ S V+++FES
Sbjct: 432 SEAWACLGKIYRQSGDKQLAKQAFDRARSIDPSLALPWAGMSAENYHQSGSSPVNESFES 491
Query: 476 CLRAVQILPLAEFQIGLAKLAKLSGHLSSSQVFGAIQQAIQRGPHYPESHNLYGLVCEAR 535
CLRAVQILPL EFQIGL +A S +L S QV A++QA+QR PHYPESHNL GL+ E R
Sbjct: 492 CLRAVQILPLPEFQIGLGTIAARSSNLLSPQVLMAVRQAVQRAPHYPESHNLNGLISEVR 551
Query: 536 SDYQAAVVSYRLARYAISS--SSGTVPNSHFQDISINLARSLSRAGNALDAVRECESLER 593
D+Q+A+ Y AR+A+ +S + F D+S+NLAR+L +AG A DAVRECE L
Sbjct: 552 LDFQSAITFYLQARFALGMMYNSKSDNRQAFADVSVNLARALCKAGFATDAVRECEELRS 611
Query: 594 QGMLDAEVLQVYAFSLWQLGKYDLALSMARNLASSVSAMEQSSAAASVSFICRLLYHISG 653
QG+L + LQ+YA +LW+ G+ ALS++R+LA ++S ++ SA A+ FIC L+Y ISG
Sbjct: 612 QGLLSVDGLQIYALALWKTGQSKEALSVSRSLAENLSGIKAESATAAWGFICTLMYGISG 671
Query: 654 LDSTINSILKMPKGLFQCSKMSFIVSAIHALDHSNRLESVVSSSRNCIASPEEITGMHYL 713
DS I K+P L S++ FIVSA+ AL + RL+ + + E ++ +H
Sbjct: 672 KDSAAAIIHKLPGQLNYNSQLKFIVSALDALHPTKRLQLPQLNMPPKHTAYEVMSEVHSN 731
Query: 714 VALNKLVKNGPESCLGFNSGIFHLRKVLHVYPNCNLIRNLLGYLLLSSDEWRYSHVASRC 773
+AL K + + L + + +L+KVLH+YP+C+L+RN LG LLL S +W SH A R
Sbjct: 732 IALGKAIGADFDKPLRVDGSLSYLKKVLHMYPDCSLVRNQLGSLLLWSGDWMASHKAIRV 791
Query: 774 CSLETSDCIKKEGPKSAWEILGAEGVACNVIGSVDLKFSFPTCIYEHLTGPKAVQELQKC 833
+L + G +S + V+C KFSF TC +++L+GP A+ LQ+
Sbjct: 792 TTLLSHGHASSMGLRSPHHVQACAMVSCYATCPNYAKFSFATCEHQYLSGPDAIHHLQRW 851
Query: 834 LHREPWNYNVRYLLVLNLLQKAREERFPRHLCTILQRLIHVALSCEFYSIQHTSYQYQKF 893
+H EPWN + RYLLVL + QKAREER+P+H+C IL++LI LS + + QY+ F
Sbjct: 852 VHCEPWNQDARYLLVLAIFQKAREERYPKHICVILKKLIMQVLSNISNPHEKEAMQYEVF 911
Query: 894 QLLLCASEISLQGGNITGCINHAKSASALLLPDAYR---FFGHLLLSRAYAAEGNMLNLQ 950
LLL +SE+ LQ + CI AK AL + R FF HL L RAYA +G++LN +
Sbjct: 912 LLLLLSSEVCLQSLDYENCIAQAK--EALRTTPSSRVDTFFAHLQLCRAYAVQGDLLNSR 969
Query: 951 DEYVRCLELKTDYVIGWMCLKVVESLYEVQADTNTIELSFNECLKQGNNSRLIWTAKFNL 1010
+EY++CL T+ IGW+ LK +ES ++ ++ I+++ EC+K+ + W + FNL
Sbjct: 970 NEYMKCLRNHTNTEIGWVMLKQLESACSLEGSSDEIDINLRECIKRNGSDSSKWASLFNL 1029
Query: 1011 VLGFVFLWKKDFFSAEKCLAQACSLAGAESCLFLCHGTICMEIARQYHDSHFLSLAVRSL 1070
FLW +F SAEK LAQAC+ +SC+ +G CMEIAR++ F+S A SL
Sbjct: 1030 ACAQCFLWDGNFESAEKALAQACTQVDPDSCILFLNGATCMEIARKFVAPQFISRAASSL 1089
Query: 1071 TKAQKTSFVQLPVVSLLLAQAEGSLSSIEKWEKNLRLEWFTWPPEMRPAELFFQMHLLAM 1130
KAQ+ S LP+VSLLLAQAEGSL S KWEKNLRLEWF+WPPE+RPAE++FQMHLLA
Sbjct: 1090 RKAQQKSHASLPLVSLLLAQAEGSLGSKTKWEKNLRLEWFSWPPELRPAEVYFQMHLLAR 1149
Query: 1131 LSKAG-SDSSSRVEFCQSPQKWVLRAIHTNPSCLRYWKVL 1169
S A S + VE QSP+ W+LRAIH NPSC RYWK L
Sbjct: 1150 QSAAAVSQQNQLVETMQSPELWLLRAIHLNPSCPRYWKAL 1189
|
Source: Sorghum bicolor Species: Sorghum bicolor Genus: Sorghum Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1173 | ||||||
| UNIPROTKB|Q6DFB8 | 1564 | ttc37 "Tetratricopeptide repea | 0.388 | 0.291 | 0.288 | 4.4e-39 | |
| UNIPROTKB|E1B885 | 1565 | TTC37 "Uncharacterized protein | 0.387 | 0.290 | 0.299 | 2.3e-35 | |
| RGD|1306062 | 1566 | Ttc37 "tetratricopeptide repea | 0.369 | 0.276 | 0.302 | 1e-34 | |
| UNIPROTKB|F1Q2K9 | 1564 | TTC37 "Uncharacterized protein | 0.386 | 0.289 | 0.295 | 3.3e-34 | |
| UNIPROTKB|Q6PGP7 | 1564 | TTC37 "Tetratricopeptide repea | 0.381 | 0.285 | 0.293 | 3.5e-34 | |
| UNIPROTKB|E1C576 | 1563 | TTC37 "Uncharacterized protein | 0.381 | 0.286 | 0.279 | 3e-33 | |
| ASPGD|ASPL0000035828 | 1410 | AN3014 [Emericella nidulans (t | 0.243 | 0.202 | 0.256 | 4.8e-24 | |
| FB|FBgn0033376 | 1233 | CG8777 [Drosophila melanogaste | 0.397 | 0.377 | 0.247 | 8.5e-22 | |
| UNIPROTKB|G4N9I6 | 1425 | MGG_03269 "Uncharacterized pro | 0.174 | 0.143 | 0.293 | 1.3e-19 | |
| POMBASE|SPCC1919.05 | 1389 | SPCC1919.05 "Ski complex TPR r | 0.212 | 0.179 | 0.275 | 7.9e-19 |
| UNIPROTKB|Q6DFB8 ttc37 "Tetratricopeptide repeat protein 37" [Xenopus laevis (taxid:8355)] | Back alignment and assigned GO terms |
|---|
Score = 471 (170.9 bits), Expect = 4.4e-39, Sum P(2) = 4.4e-39
Identities = 139/481 (28%), Positives = 223/481 (46%)
Query: 9 LQLEDSLEANPDDPSLHLDLGLHLW----ENSESKEKAAEHFVIAAKLNPQNAVAFRYLG 64
+ L+ +LE P++ H LGL+ W E K KA F+ AAK++P + AF YLG
Sbjct: 441 ISLQYALERKPENAVYHYYLGLNYWFMSKETRRDKTKAVTQFLKAAKMDPFMSRAFYYLG 500
Query: 65 HYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPR 124
HYY+ + D RA CY++A L D +G A +L G + + + ++++
Sbjct: 501 HYYSEVAGDKSRARGCYKKAFELDDSDGEAGAAAVDLSMELGDMDVALAILTSVTERADA 560
Query: 125 --AFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKS 182
A WA+ R G L + S++V L A+R P + WE LG AY G ++ A+KS
Sbjct: 561 GTAKWAWLRRGLFYLRVGQHSKSVSDLHAALRADPKDSNCWECLGEAYLSRGGYTTALKS 620
Query: 183 YGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLASGLLGLA 242
+ +A EL+ SI+ + + +I +LG +++ V ++Q L S E V A GL L LA
Sbjct: 621 FMKASELNPDSIYSVYKIASIKQILGTYKEAVNEYQQILMKSGEYVPALKGLGECHLMLA 680
Query: 243 KQCINLGAFRWGASLLEDACKVAEANTRLAGNMSCIWKLHGDIQLTYAKCFPWAEERQSL 302
K ++ +E A + RL ++ C+WKL GD C +A S+
Sbjct: 681 KSALSDFLDLKAVDAIEKAIEFLARAIRLRPDLLCLWKLLGDA----CTCI-YAVTHSSV 735
Query: 303 EFDVETFSASIVSWKTTCLMAAISSKSS--YQRALYLAPWQANIYTDIAIT----SDLIY 356
+ +V + + + Y RAL + AN++ D+ I S +
Sbjct: 736 KVNVLGILLGNDEEQQLLNKPEVLALGGRCYGRALRIQS-TANLWCDLGINYYYQSQHLM 794
Query: 357 SLNEAYGHYQSAWHVSEKMALGALLLEGDNCQFWVTLGCLS-----NYNGLKQHALIRGL 411
+ S++ A+++E N QFW LG +S N L QHA I+ +
Sbjct: 795 GYDSLTNDASELLEKSQQCIKKAVMVESGNHQFWNALGVVSCSKGMGNNALAQHAFIKSI 854
Query: 412 QLDVSLADAWAHIGKLYGEVGEKKLARQAFDSARSIDPSLALPWAGMS--ADVQASESLV 469
+ + AW ++G LY G +L+ QAF A+S+DP W G + A+ S +
Sbjct: 855 HCEQNNVAAWTNLGALYLMNGNIELSHQAFKVAQSLDPLYVRCWIGQALIAETVGSHETM 914
Query: 470 D 470
D
Sbjct: 915 D 915
|
|
| UNIPROTKB|E1B885 TTC37 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 428 (155.7 bits), Expect = 2.3e-35, Sum P(2) = 2.3e-35
Identities = 143/477 (29%), Positives = 215/477 (45%)
Query: 12 EDSLEANPDDPSLHLDLGLHLWENSES----KEKAAEHFVIAAKLNPQNAVAFRYLGHYY 67
+ +LE +P+ H LGL W E K KA HF+ AAKL+ F YLGHYY
Sbjct: 446 QQALEKDPEVAEYHYQLGLTYWSMGEEARKDKTKALTHFLKAAKLDTYMGKVFCYLGHYY 505
Query: 68 TRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCEL-LEHGGKES-LEVVVCREASDKSPRA 125
D RA CY++A L D+ SG A +L +E E+ L ++ + A
Sbjct: 506 KDVVGDKNRARGCYRKAFELDDTDAESGAAAVDLSVELEEMETALAILTTVTQKASAGTA 565
Query: 126 FWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGR 185
WA+ R G L + S+AV LQ A+R P + WE+LG AY G ++ A+KS+ +
Sbjct: 566 KWAWLRRGLYYLKAGQHSQAVADLQAALRADPKDFNCWESLGEAYLSRGGYTTALKSFTK 625
Query: 186 AIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLASGLLGLAKQC 245
A EL+ S + + + I LG +++ V Q+QL +K + V A GL L LAK
Sbjct: 626 ASELNPESTYSVFKVAAIQQTLGKYKEAVAQYQLIIKKKEDYVPALKGLGECHLLLAKAA 685
Query: 246 INLGAFRWGASLLEDACKVAEANTRLAGNMSCIWKLHGDIQLTYAKCFPWAEERQSLEFD 305
+ +E A + + ++SC+WKL GD + + P L
Sbjct: 686 LVDYLDGKAVDYIEKALEYFTRALQHRADVSCLWKLVGDACTSLSAVSPSKVNVSVLGVL 745
Query: 306 VETFSASIVSWKTTCLMAAISSKSSYQRALYLAPWQANIYTDIAIT----SDLIYSLNEA 361
+ V K L + + Y RAL L +N + D+ I + +
Sbjct: 746 LGQKEGKQVLKKNELLH--LGGRC-YGRALKLMS-TSNTWCDLGINYYRQAQHLADTGSN 801
Query: 362 YGHYQSAWHVSEKMALGALLLEGDNCQFWVTLGCLSNYNG-----LKQHALIRGLQLDVS 416
Q S A+ L+ +N +W LG +S Y+G L QH I+ +Q +
Sbjct: 802 SDDLQELLEKSMHCLKKAVRLDSNNHLYWNALGVVSCYSGIGNYALAQHCFIKSIQSEQI 861
Query: 417 LADAWAHIGKLYGEVGEK-KLARQAFDSARSIDPSLALPWAGMS--ADVQASESLVD 470
A AW ++G LY EK + A +AF A+S+DPS + W G + A+ S +D
Sbjct: 862 NAVAWTNLGVLY-LANEKIEQAHEAFKMAQSLDPSYLMCWIGQALIAETVGSYDTMD 917
|
|
| RGD|1306062 Ttc37 "tetratricopeptide repeat domain 37" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 421 (153.3 bits), Expect = 1.0e-34, Sum P(2) = 1.0e-34
Identities = 142/470 (30%), Positives = 221/470 (47%)
Query: 14 SLEANPDDPSLHLDLGLHLW----ENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTR 69
+LE + + H LGL W E + + KA HF+ AA+L+ F YLGHYY
Sbjct: 446 ALEKDAEVAEYHYQLGLTYWLMGEETRKDRTKALNHFLKAARLDAHMGKVFCYLGHYYRD 505
Query: 70 FSIDTQRAIKCYQRAVSLSPDDSVSGEALCEL-LEHGGKES-LEVV--VCREASDKSPRA 125
+ D RA CY++A L D+ SG A +L +E E+ L ++ V ++AS + +
Sbjct: 506 VAGDRNRARGCYRKAFELDDSDAESGAAAVDLSVELEDTETALAILTAVTQKASSGAAKW 565
Query: 126 FWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGR 185
W R L YL+ H S+AV LQ A+R P + WE+LG AY G ++ A+KS+ R
Sbjct: 566 AWLRRGLYYLKAGHH--SQAVADLQAALRADPKDCNCWESLGEAYLSRGSYTTALKSFTR 623
Query: 186 AIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLASGLLGLAKQC 245
A EL S + + + I +LG + + + Q+QL +K + V A GL L L K
Sbjct: 624 ASELSPDSTYSVFKVAAIQQILGRYSEAIAQYQLIIKKEEDYVPALKGLGECHLMLGKAA 683
Query: 246 INLGAFRWGASL--LEDACKVAEANTRLAGNMSCIWKLHGDIQLTYAKCFPW-AEERQSL 302
L F G ++ +E A + ++SC+WKL GD P R S
Sbjct: 684 --LVDFLDGKAVDYVEQALGYFTRALQHRADVSCLWKLMGDACTCLHPVSPAKVNVRVSG 741
Query: 303 EFDVETFSASIVSWKTTCLMAAISSKSSYQRALYLAPWQANIYTDIAIT--------SDL 354
+ ++ K L + + Y RAL L +N + D+ I ++
Sbjct: 742 ALLGQQEGQEVLR-KDELLH--LGGRC-YGRALKLMS-TSNTWCDLGINYYRQAQHLAET 796
Query: 355 IYSLNEAYGHYQSAWHVSEKMALGALLLEGDNCQFWVTLGCLSNYNG-----LKQHALIR 409
S+N+ + + H +K A+ L+ +N +W LG ++ Y+G L QH I+
Sbjct: 797 GSSMNDLTELLEKSLHCLKK----AVRLDSNNHLYWNALGVVTCYHGVGNYALAQHCFIK 852
Query: 410 GLQLDVSLADAWAHIGKLYGEVGEKKLARQAFDSARSIDPSLALPWAGMS 459
+Q + A AW ++G LY + A +AF A+S+DPS L W G +
Sbjct: 853 SIQAEQINAAAWTNLGVLYLATENIEQAHEAFQMAQSLDPSYLLCWIGQA 902
|
|
| UNIPROTKB|F1Q2K9 TTC37 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 423 (154.0 bits), Expect = 3.3e-34, Sum P(3) = 3.3e-34
Identities = 140/474 (29%), Positives = 216/474 (45%)
Query: 14 SLEANPDDPSLHLDLGLHLW----ENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTR 69
+LE +P+ H LGL W E + K KA HF+ AA+L+ F YLGHYY
Sbjct: 446 ALEKDPEVAEYHYQLGLTYWFMDEETRKDKTKALTHFLKAARLDTYMGKVFCYLGHYYRD 505
Query: 70 FSIDTQRAIKCYQRAVSLSPDDSVSGEALCEL-LEHGGKES-LEVVVCREASDKSPRAFW 127
D RA CY++A L D+ SG A +L +E E+ L ++ + A W
Sbjct: 506 VVGDKNRARGCYKKAFELDDTDAESGAAAVDLSVELEEMETALAILTTVTQKASAGTAKW 565
Query: 128 AFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAI 187
A+ R G L + S+AV LQ A+R P + WE+LG AY G ++ A+KS+ +A
Sbjct: 566 AWLRRGLYYLKAGQHSQAVADLQAALRADPKDFNCWESLGEAYLSRGGYTTALKSFTKAS 625
Query: 188 ELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLASGLLGLAKQCIN 247
EL+ S + + + I +LG +++ + Q+QL +K + V A GL L +AK +
Sbjct: 626 ELNPESTYSVFKVAAIQQILGKYKEAIAQYQLIIKKKEDYVPALKGLGECHLMMAKAALV 685
Query: 248 LGAFRWGASLLEDACKVAEANTRLAGNMSCIWKLHGDIQLTYAKCFPWAEERQSLEFDVE 307
+E A + + ++SC+WKL GD + P + L +
Sbjct: 686 DYLDGKAVDYIEKALEYFTWALQHQADVSCLWKLVGDACTSLYAVSPSKVNVKVLGVLLG 745
Query: 308 TFSASIVSWKTTCLMAAISSKSSYQRALYLAPWQANIYTDIAITS-DLIYSLNEAYGHYQ 366
V K L + + Y RAL L +N + D+ I +L E +
Sbjct: 746 QKEGKQVLKKNELLH--LGGRC-YGRALKLMS-TSNTWCDLGINYYRQAQNLTETGNNTN 801
Query: 367 SAWHVSEKMA---LGALLLEGDNCQFWVTLGCLSNYNG-----LKQHALIRGLQLDVSLA 418
+ EK A+ L+ N +W LG +S +NG L QH I+ +Q + A
Sbjct: 802 DLKELLEKSLHCLKKAVRLDSKNHLYWNALGVVSCHNGIGNYALAQHCFIKSIQSEQINA 861
Query: 419 DAWAHIGKLYGEVGEKKLARQAFDSARSIDPSLALPWAGMS--ADVQASESLVD 470
AW ++G LY + A +AF A+S+DPS + W G + A+ S +D
Sbjct: 862 VAWTNLGVLYLASENIEQAHEAFKMAQSLDPSYLMCWIGQALIAETVGSYDTMD 915
|
|
| UNIPROTKB|Q6PGP7 TTC37 "Tetratricopeptide repeat protein 37" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 417 (151.9 bits), Expect = 3.5e-34, Sum P(2) = 3.5e-34
Identities = 137/466 (29%), Positives = 211/466 (45%)
Query: 14 SLEANPDDPSLHLDLGLHLW----ENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTR 69
+LE + + H LGL W E + K KA HF+ AA+L+ F YLGHYY
Sbjct: 446 ALEKDTEVAEYHYQLGLTYWFMGEETRKDKTKALTHFLKAARLDTYMGKVFCYLGHYYRD 505
Query: 70 FSIDTQRAIKCYQRAVSLSPDDSVSGEALCEL-LEHGGKE-SLEVVVCREASDKSPRAFW 127
D RA CY++A L D+ SG A +L +E E +L ++ + A W
Sbjct: 506 VVGDKNRARGCYRKAFELDDTDAESGAAAVDLSVELEDMEMALAILTTVTQKASAGTAKW 565
Query: 128 AFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAI 187
A+ R G L + S+AV LQ A+R P + WE+LG AY G ++ A+KS+ +A
Sbjct: 566 AWLRRGLYYLKAGQHSQAVADLQAALRADPKDFNCWESLGEAYLSRGGYTTALKSFTKAS 625
Query: 188 ELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLASGLLGLAKQCIN 247
EL+ SI+ + + I +LG +++ V Q+Q+ +K + V A GL L +AK +
Sbjct: 626 ELNPESIYSVFKVAAIQQILGKYKEAVAQYQMIIKKKEDYVPALKGLGECHLMMAKAALV 685
Query: 248 LGAFRWGASLLEDACKVAEANTRLAGNMSCIWKLHGDIQLTYAKCFPWAEERQSLEFDVE 307
+E A + + ++SC+WKL GD P L +
Sbjct: 686 DYLDGKAVDYIEKALEYFTCALQHRADVSCLWKLAGDACTCLYAVAPSKVNVHVLGVLLG 745
Query: 308 TFSASIVSWKTTCLMAAISSKSSYQRALYLAPWQANIYTDIAITS-DLIYSLNEAYGHYQ 366
V K L + + Y RAL L +N + D+ I L E +
Sbjct: 746 QKEGKQVLKKNELLH--LGGRC-YGRALKLMS-TSNTWCDLGINYYRQAQHLAETGSNMN 801
Query: 367 SAWHVSEKMA---LGALLLEGDNCQFWVTLGCLSNYNG-----LKQHALIRGLQLDVSLA 418
+ EK A+ L+ +N +W LG ++ Y+G L QH I+ +Q + A
Sbjct: 802 DLKELLEKSLHCLKKAVRLDSNNHLYWNALGVVACYSGIGNYALAQHCFIKSIQSEQINA 861
Query: 419 DAWAHIGKLYGEVGEKKLARQAFDSARSIDPSLALPWAGMSADVQA 464
AW ++G LY + A +AF A+S+DPS + W G + +A
Sbjct: 862 VAWTNLGVLYLTNENIEQAHEAFKMAQSLDPSYLMCWIGQALIAEA 907
|
|
| UNIPROTKB|E1C576 TTC37 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 415 (151.1 bits), Expect = 3.0e-33, Sum P(3) = 3.0e-33
Identities = 131/469 (27%), Positives = 212/469 (45%)
Query: 12 EDSLEANPDDPSLHLDLGLHLW----ENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYY 67
++++E + H LGL W E K K HF+ AAKL+ AF YLG+YY
Sbjct: 442 QNAIERRAEIAEYHQYLGLTYWFMSDETKRDKGKTLTHFLKAAKLDSYLGSAFCYLGNYY 501
Query: 68 TRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPR--A 125
+ D RA CY++A L D SG A +L G + + E ++K+ A
Sbjct: 502 RDVAGDKSRARGCYKKAFELDGTDEESGTAAVDLSVELGDTDTALSILNEVTEKANAGAA 561
Query: 126 FWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGR 185
WA+ G L + S+AV LQ A+R P+ WE+LG AY G ++AA+KS+ +
Sbjct: 562 KWAWLHRGLYYLRTGQPSKAVADLQAALRADRMDPNCWESLGEAYVSRGSYAAALKSFRK 621
Query: 186 AIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLASGLLGLAKQC 245
A EL+ ++ + + + +LG + + +Q L+ + E V A GL L LA+
Sbjct: 622 ASELNPDHVYSIYRAAAVEQILGKYENAIVTYQQILEKTEEYVPALKGLGECYLMLARSA 681
Query: 246 INLGAFRWGASLLEDACKVAEANTRLAGNMSCIWKLHGDIQLTYAKCFPWAEERQSLEFD 305
+ +E A + T+ ++S +WKL GD + P Q L
Sbjct: 682 LEKYLDMRAVGYIEQALEFFTRATKQRPDISSLWKLLGDTCTSVHVISPTKVNVQVLGSL 741
Query: 306 VETFSASIVSWKTTCLMAAISSKSSYQRALYLAPWQANIYTDIAIT----SDLIYSLNEA 361
+ + K+ L + + Y RAL L P NI+ D+ I ++ + ++
Sbjct: 742 LGKNENKPMLKKSELLR--LGGRC-YGRALKLIPLP-NIWCDLGINYYRQAEHLTAVGTD 797
Query: 362 YGHYQSAWHVSEKMALGALLLEGDNCQFWVTLG----C--LSNYNGLKQHALIRGLQLDV 415
+ S + A+ L+ N +W LG C + NY L QH+ I+ +Q +
Sbjct: 798 MNEIRELLEKSLQCLKKAVRLDSKNHLYWNALGVVASCSVIGNY-ALAQHSFIKSVQAEE 856
Query: 416 SLADAWAHIGKLYGEVGEKKLARQAFDSARSIDPSLALPWAGMSADVQA 464
AW ++G LY G + A +AF A+S++PS + W G + +A
Sbjct: 857 INVVAWTNLGVLYLATGNIEQAHEAFKVAQSLEPSYLMCWIGQALVAEA 905
|
|
| ASPGD|ASPL0000035828 AN3014 [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
|---|
Score = 225 (84.3 bits), Expect = 4.8e-24, Sum P(2) = 4.8e-24
Identities = 82/320 (25%), Positives = 141/320 (44%)
Query: 28 LGLHLWENSES----KEKAAEH--FVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCY 81
+G WE S K +A + F+ + + N A A+ LG YY + D RA +C+
Sbjct: 526 IGYCQWEIDPSPAARKNRAGAYASFLASVQANISFAPAYTSLGLYYADYKKDKVRARRCF 585
Query: 82 QRAVSLSPDDSVSGEALC---------ELLEHGGKESLEVVVCREASDKSPRAF-WAFRR 131
+A LSP + V+ E L +L+E + ++ + A + + W +
Sbjct: 586 HKAFELSPSEIVAAERLARTFADQKEWDLVEAVSQRVVDSGKAKPAPGSKRKGYSWPYAA 645
Query: 132 LGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDD 191
LG +Q++ +++ +++ S Q A+R P H W LG +YH G + AA K++ A +L+
Sbjct: 646 LGTVQINKQQYPKSIVSFQAALRISPDDYHSWVGLGESYHNSGRYIAATKAFYHAQQLEP 705
Query: 192 TSIFPLLESGNIFL---MLGNFRK-------GVEQFQLALKISSENVSAHYGLASGLLGL 241
T E G I+ ML N ++ + +++ LKI + L L
Sbjct: 706 T--LSNTEKGQIWFARYMLANVKRELGEYDDAIARYEEVLKIRPNELGVTIALLQTLTEN 763
Query: 242 AKQCINLGAFRWGASLLEDACKVAEANTRLAGNMSCIWKLHGDIQ--LTYAKC----FPW 295
+ +C+ G F A L A VA++ ++ +WK GD L+Y K P
Sbjct: 764 SWKCLESGLFNDCAELARKAIIVAKSLATERADIFNLWKGVGDACAILSYVKSKAAKLPM 823
Query: 296 AEERQSLEFDVETFSASIVS 315
E R L +E + I++
Sbjct: 824 KEVRGLLSTQLEASALCILT 843
|
|
| FB|FBgn0033376 CG8777 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 302 (111.4 bits), Expect = 8.5e-22, Sum P(2) = 8.5e-22
Identities = 122/493 (24%), Positives = 217/493 (44%)
Query: 1 DD-EKGALLLQLEDSLEANPDDPSL--HLDLG-LHLWENSESKEKAAEHFVIAAKLNPQN 56
DD K +L ++L+ D + +L G LH+ + S A + + A +L P
Sbjct: 382 DDLTKAEFVLSPSEALQEIADCKTFEAYLLCGKLHMALKNYSD--ALNYVLKATRLRPHF 439
Query: 57 AVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESL-EVVVC 115
A F YLG Y + D RA KCY++ +SL+P + +AL + + G+E L E ++
Sbjct: 440 AECFDYLGKLYPLATGDFSRARKCYEKCISLNPLAEEAVDALSFIYQEQGEEELNETLLL 499
Query: 116 REASDK-SPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLG 174
S S + +LG H KKW A+Q + AI+ WE+LG AY G
Sbjct: 500 NTLSHLGSNESIRLQYKLGLHFSHVKKWDSAIQCFRIAIKNDSRCISYWESLGDAYAGRG 559
Query: 175 MFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGL 234
+++AI+ + + +EL + + LL+ ++ + + + +E + L+ + + G
Sbjct: 560 SYNSAIRVFQKILELSPENNYALLQIASVKTTIRMYTESIEDYDTLLQRNPTYLPGLRGA 619
Query: 235 ASGLLGLAKQCINLGAFRWGASLLEDACKVAEAN--TRLAGNMSCIWKLHGDIQLTYAKC 292
A +G+A + + + + A + ++ R A M +W+L +I + A+
Sbjct: 620 AEAHIGIANSLKSQNLYGRSKAHFQLALEHLQSAFLQREAQGMVWLWRLSANIFVQTAQ- 678
Query: 293 FPWAEERQSLEFDVETFSASIVSWKTTCLMAAISSKSSYQRALYLAPWQANIYTDIAITS 352
P + + ++ I L+ ++ Y AL L ++ ++++ S
Sbjct: 679 LPHSLANLDVAGNLAKREEPIAYLSRKDLLQL--AQRFYLCALKLKQ-NTYLWYELSLAS 735
Query: 353 --DLIYSLNEAYGHYQSAWHVSEKMALGALLLEGDNCQFWVTLGCLS----NYN-GLKQH 405
I +A GH ++A KMA+ + Q W LG ++ N N L QH
Sbjct: 736 YYSAILIPEDANGHLETATKAC-KMAIKEC---SNRWQNWNLLGVINMNSENENLPLAQH 791
Query: 406 ALIRGLQLDVSLADAWAHIGKLYGEVGEKKLARQAFDSARSIDPSLALPWAG--MSADVQ 463
I+ + L+ AW ++G LY ++ E +LA +AF A+ P A W G M A++
Sbjct: 792 CFIQAVVLEKKCYTAWTNLGVLYIKLNEVRLANEAFTRAQQSSPVYANAWIGQAMVAELI 851
Query: 464 ASESLVDDAFESC 476
D F C
Sbjct: 852 GDREEAFDLFRHC 864
|
|
| UNIPROTKB|G4N9I6 MGG_03269 "Uncharacterized protein" [Magnaporthe oryzae 70-15 (taxid:242507)] | Back alignment and assigned GO terms |
|---|
Score = 193 (73.0 bits), Expect = 1.3e-19, Sum P(3) = 1.3e-19
Identities = 66/225 (29%), Positives = 108/225 (48%)
Query: 28 LGLHLW--ENSESKEK----AAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCY 81
LG+ +W + S++ K A F+ K + A A+ LG YY S D RA KC+
Sbjct: 537 LGVCIWNIDTSKAARKSRSGAYAQFLACLKNDLNFAPAYTSLGIYYEECSKDKNRARKCF 596
Query: 82 QRAVSLSPDDSVSGEALCE-LLEHGGKESLEVVVCREA-SDK------SPRA--FWAFRR 131
+AV LSP + + E L L + + +E+V R S K S R W F
Sbjct: 597 LKAVELSPSEVDAAERLARSLADERDWDGVELVSQRVVDSGKVRPPPGSKRKGLSWPFAA 656
Query: 132 LGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDD 191
LG +L+ + +++AV S Q A+R P H W LG +Y+ G + AA K+ A +L+
Sbjct: 657 LGVAELNKQDYAKAVVSFQSALRISPDDYHSWVGLGESYYNSGRYIAATKATLNAQQLES 716
Query: 192 TSIFPLLESGNIFL---MLGNFRKGVEQFQLALKISSENVSAHYG 233
TS P ++ +++ +L N ++ + + A+ + E + G
Sbjct: 717 TSSGPQ-DADDVWFTKFLLANIKRQLSSYDEAIALYREVIEKRPG 760
|
|
| POMBASE|SPCC1919.05 SPCC1919.05 "Ski complex TPR repeat subunit Ski3 (predicted)" [Schizosaccharomyces pombe (taxid:4896)] | Back alignment and assigned GO terms |
|---|
Score = 219 (82.2 bits), Expect = 7.9e-19, Sum P(2) = 7.9e-19
Identities = 72/261 (27%), Positives = 117/261 (44%)
Query: 40 EKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALC 99
E + FV + + +P A A+ LG YY R D RA KC+Q+A L + EAL
Sbjct: 558 EDSFSAFVSSLRKDPNYAPAYTSLGLYY-RDIHDMVRATKCFQKAFELDASQVEAAEALA 616
Query: 100 ELLEHGGKESLEVVVCREA-----SD-KSPRAF-WAFRRLGYLQLHHKKWSEAVQSLQHA 152
+ + L V+ R +D K + F W LG L+L+ K + +A+ Q A
Sbjct: 617 KTFAEANEWELVEVISRRVLNTSENDLKRKKKFNWHHTSLGVLELNAKNFHKAIVHFQSA 676
Query: 153 IRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRK 212
+R P + W LG AY R G + +A+K++ RA LD + + +G +
Sbjct: 677 LRISPKDTNAWSGLGEAYARSGRYVSALKAFNRASILDPDDWYVKYFIATLEKDMGEYEV 736
Query: 213 GVEQFQLALKISSENVSAHYGLASGLLGLAKQCINLGAFRWGASLLEDACKVAEANTRLA 272
V L + S+ + LA + LAK G + A LE + ++ N L
Sbjct: 737 AVSTLSEILAVRSKELCVQVSLAETYVRLAKLYHARGFYSRAADSLEKSIQIC-CNV-LK 794
Query: 273 GNMSCI--WKLHGDIQLTYAK 291
+++ I W++ GD L++ +
Sbjct: 795 EDITSIFSWEILGDACLSFCQ 815
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 1173 | |||
| TIGR02917 | 899 | TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system | 2e-16 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 9e-09 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 9e-09 | |
| pfam13414 | 69 | pfam13414, TPR_11, TPR repeat | 4e-08 | |
| COG0457 | 291 | COG0457, NrfG, FOG: TPR repeat [General function p | 4e-07 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 1e-06 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 4e-06 | |
| TIGR02917 | 899 | TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system | 2e-05 | |
| COG5010 | 257 | COG5010, TadD, Flp pilus assembly protein TadD, co | 3e-05 | |
| TIGR02552 | 135 | TIGR02552, LcrH_SycD, type III secretion low calci | 4e-05 | |
| TIGR02521 | 234 | TIGR02521, type_IV_pilW, type IV pilus biogenesis/ | 1e-04 | |
| pfam13414 | 69 | pfam13414, TPR_11, TPR repeat | 2e-04 | |
| TIGR02917 | 899 | TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system | 9e-04 | |
| pfam13414 | 69 | pfam13414, TPR_11, TPR repeat | 0.002 | |
| PRK11447 | 1157 | PRK11447, PRK11447, cellulose synthase subunit Bcs | 0.003 | |
| pfam00515 | 34 | pfam00515, TPR_1, Tetratricopeptide repeat | 0.003 | |
| TIGR02917 | 899 | TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system | 0.004 |
| >gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Score = 84.4 bits (209), Expect = 2e-16
Identities = 134/636 (21%), Positives = 230/636 (36%), Gaps = 90/636 (14%)
Query: 11 LEDSLEANPDDPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRY--LGHYYT 68
++ P++ ++ L L L E E E+A +H K P + +A L +
Sbjct: 216 YRKAIALRPNNIAVLLALATILIEAGEF-EEAEKHADALLKKAPNSPLAHYLKALVDFQK 274
Query: 69 RFSIDTQRAIKCYQRAVSLSPDD----SVSGEALCELLEHGGKES-LEVVVCREASDKSP 123
+ + + A + Q A+ +P+ ++G + +L L ++ +P
Sbjct: 275 K---NYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQIL-----KYAP 326
Query: 124 RAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSY 183
+ A R L +QL + EA+ +L A+ P P LG AY LG F A +
Sbjct: 327 NSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYL 386
Query: 184 GRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLASGLLGLAK 243
+A ELD + + G L G+ + + + A ++ E A L L +
Sbjct: 387 AKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQ 446
Query: 244 QCINLGAFRWGASLLEDACKVAEANTRLAGNMSCIWKLHGDIQLT---YAKCFPWAEE-- 298
+ A A+ + + + + L G I L AK A E
Sbjct: 447 --------------FDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAK----AREAF 488
Query: 299 RQSLEFDVETFSASIVSWKTTCLMAAIS------SKSSYQRALYLAPWQANIYTDIAITS 352
++L + + F A+ I + +++ L + P ++
Sbjct: 489 EKALSIEPDFFPAAA-----NLARIDIQEGNPDDAIQRFEKVLTIDP------KNL---- 533
Query: 353 DLIYSLNEAYGHYQSAWHVSEKMALGAL--LLEGDNCQFWVTLGCLSNYNGLKQHALIRG 410
I +L Y +E+ A+ L E + + L Y G Q L +
Sbjct: 534 RAILALAGLY-----LRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQ--LKKA 586
Query: 411 LQLDVSLAD-------AWAHIGKLYGEVGEKKLARQAFDSARSIDPSLALPWAGMSADVQ 463
L + AD AW +G+ G+ A +F ++ P AL + AD
Sbjct: 587 LAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALL-LLADAY 645
Query: 464 ASESLVDDAFESCLRAVQILP-LAEFQIGLAKLAKLSGHLSSSQVFGAIQQAIQRGPHYP 522
A A S RA+++ P E QIGLA+L + S+ + ++ P
Sbjct: 646 AVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESA--KKIAKSLQKQHPKAA 703
Query: 523 ESHNLYGLVCEARSDYQAAVVSYRLARYAISSSSGTVPNSHFQDISINLARSLSRAGNAL 582
L G + + DY AA+ +YR + SS I L R+L +GN
Sbjct: 704 LGFELEGDLYLRQKDYPAAIQAYR-KALKRAPSSQNA---------IKLHRALLASGNTA 753
Query: 583 DAVRECESLERQGMLDAEVLQVYAFSLWQLGKYDLA 618
+AV+ E+ + DA + A YD A
Sbjct: 754 EAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKA 789
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 53.9 bits (130), Expect = 9e-09
Identities = 25/96 (26%), Positives = 48/96 (50%)
Query: 128 AFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAI 187
A LG L + EA++ + A+ P + + L AY++LG + A++ Y +A+
Sbjct: 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKAL 61
Query: 188 ELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKI 223
ELD + G + LG + + +E ++ AL++
Sbjct: 62 ELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALEL 97
|
Length = 100 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 53.5 bits (129), Expect = 9e-09
Identities = 22/82 (26%), Positives = 40/82 (48%)
Query: 162 LWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLAL 221
LG Y++LG + A++ Y +A+ELD + + LG + + +E ++ AL
Sbjct: 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKAL 61
Query: 222 KISSENVSAHYGLASGLLGLAK 243
++ +N A+Y L L K
Sbjct: 62 ELDPDNAKAYYNLGLAYYKLGK 83
|
Length = 100 |
| >gnl|CDD|222112 pfam13414, TPR_11, TPR repeat | Back alignment and domain information |
|---|
Score = 50.8 bits (122), Expect = 4e-08
Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Query: 128 AFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLG-MFSAAIKSYGRA 186
A + LG + EA+++ + A+ P + + L LAY +LG + A++ +A
Sbjct: 5 ALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALEDLEKA 64
Query: 187 IELD 190
+ELD
Sbjct: 65 LELD 68
|
Length = 69 |
| >gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 52.9 bits (125), Expect = 4e-07
Identities = 51/192 (26%), Positives = 81/192 (42%), Gaps = 5/192 (2%)
Query: 3 EKGALLLQLEDSLEANPDDPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRY 62
E+ LL+ LE P+ L+LGL L E E+A E A L+P +A
Sbjct: 76 EEALELLEKALELELLPNLAEALLNLGL-LLEALGKYEEALELLEKALALDPDPDLAEAL 134
Query: 63 LGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEH----GGKESLEVVVCREA 118
L D + A++ Y++A+ L P+ + EAL L G E ++ +
Sbjct: 135 LALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKAL 194
Query: 119 SDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSA 178
A LG L L K+ EA++ + A+ P + L L LG +
Sbjct: 195 KLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEE 254
Query: 179 AIKSYGRAIELD 190
A+++ +A+ELD
Sbjct: 255 ALEALEKALELD 266
|
Length = 291 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 47.8 bits (114), Expect = 1e-06
Identities = 31/132 (23%), Positives = 56/132 (42%), Gaps = 35/132 (26%)
Query: 59 AFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREA 118
A LG+ Y + D A++ Y++A+ L PD++
Sbjct: 2 ALLNLGNLYYKLG-DYDEALEYYEKALELDPDNAD------------------------- 35
Query: 119 SDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSA 178
A+ L K+ EA++ + A+ P + + LGLAY++LG +
Sbjct: 36 ---------AYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYEE 86
Query: 179 AIKSYGRAIELD 190
A+++Y +A+ELD
Sbjct: 87 ALEAYEKALELD 98
|
Length = 100 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 46.2 bits (110), Expect = 4e-06
Identities = 22/82 (26%), Positives = 43/82 (52%), Gaps = 2/82 (2%)
Query: 26 LDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAV 85
L+LG ++ + ++A E++ A +L+P NA A+ L Y + + A++ Y++A+
Sbjct: 4 LNLGNLYYKLGD-YDEALEYYEKALELDPDNADAYYNLAAAYYKLG-KYEEALEDYEKAL 61
Query: 86 SLSPDDSVSGEALCELLEHGGK 107
L PD++ + L GK
Sbjct: 62 ELDPDNAKAYYNLGLAYYKLGK 83
|
Length = 100 |
| >gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Score = 48.2 bits (115), Expect = 2e-05
Identities = 63/298 (21%), Positives = 101/298 (33%), Gaps = 68/298 (22%)
Query: 8 LLQLEDSLEANPDDPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYY 67
L L ++ +A PD P L LG KA F L P +A+A L Y
Sbjct: 587 LAILNEAADAAPDSPEAWLMLGRAQLAAG-DLNKAVSSFKKLLALQPDSALALLLLADAY 645
Query: 68 TRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGG---------------KESLEV 112
+ +AI +RA+ L PD++ + L +LL +
Sbjct: 646 AVMK-NYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAAL 704
Query: 113 VVCREA-----SDKSPRAFWAFR-------------RLGYLQLHHKKWSEAVQSLQHAIR 154
E P A A+R +L L +EAV++L+ ++
Sbjct: 705 GFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLK 764
Query: 155 GYPTSPHLWEALGLAYHRLGMFSAAIKSY--------------------------GRAIE 188
+P L AL Y + AIK Y RA+E
Sbjct: 765 THPNDAVLRTALAELYLAQKDYDKAIKHYQTVVKKAPDNAVVLNNLAWLYLELKDPRALE 824
Query: 189 LDDTS------IFPLLES-GNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLASGLL 239
+ + I +L++ G + + G + + + A+ I+ E + Y LA LL
Sbjct: 825 YAERALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALL 882
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899 |
| >gnl|CDD|227343 COG5010, TadD, Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Score = 46.7 bits (111), Expect = 3e-05
Identities = 36/121 (29%), Positives = 55/121 (45%), Gaps = 3/121 (2%)
Query: 71 SIDTQRAIKCYQRAVSLSPDD-SVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAF 129
TQ A AV +P+D S++ A L SL V+ ++++ P+
Sbjct: 46 MRQTQGAAAALGAAVLRNPEDLSIAKLATALYLRGDADSSLAVL--QKSAIAYPKDRELL 103
Query: 130 RRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIEL 189
G Q+ + + EAV L+ A R PT W LG A +LG F A ++Y +A+EL
Sbjct: 104 AAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALEL 163
Query: 190 D 190
Sbjct: 164 A 164
|
Length = 257 |
| >gnl|CDD|233924 TIGR02552, LcrH_SycD, type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 4e-05
Identities = 24/97 (24%), Positives = 36/97 (37%)
Query: 131 RLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELD 190
L Y ++ EA++ Q P + W L L + AI +Y A LD
Sbjct: 22 ALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD 81
Query: 191 DTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSEN 227
P + L LG ++ LA++I EN
Sbjct: 82 PDDPRPYFHAAECLLALGEPESALKALDLAIEICGEN 118
|
Genes in this family are found in type III secretion operons. LcrH, from Yersinia is believed to have a regulatory function in the low-calcium response of the secretion system. The same protein is also known as SycD (SYC = Specific Yop Chaperone) for its chaperone role. In Pseudomonas, where the homolog is known as PcrH, the chaperone role has been demonstrated and the regulatory role appears to be absent. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. Length = 135 |
| >gnl|CDD|131573 TIGR02521, type_IV_pilW, type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 1e-04
Identities = 41/200 (20%), Positives = 74/200 (37%), Gaps = 46/200 (23%)
Query: 25 HLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRA 84
+ L L E + E A E+ A + +P + +A+ L YY + + ++A ++RA
Sbjct: 34 RVQLALGYLEQGDL-EVAKENLDKALEHDPDDYLAYLALALYYQQLG-ELEKAEDSFRRA 91
Query: 85 VSLSPDDSVS----GEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHK 140
++L+P++ G LC
Sbjct: 92 LTLNPNNGDVLNNYGTFLC--------------------------------------QQG 113
Query: 141 KWSEAVQSLQHAIR--GYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLL 198
K+ +A+Q + AI YP E GL + G F A K RA+++D LL
Sbjct: 114 KYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLL 173
Query: 199 ESGNIFLMLGNFRKGVEQFQ 218
E ++ + G ++ +
Sbjct: 174 ELAELYYLRGQYKDARAYLE 193
|
Members of this family are designated PilF in ref (PMID:8973346) and PilW in ref (PMID:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. Length = 234 |
| >gnl|CDD|222112 pfam13414, TPR_11, TPR repeat | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 2e-04
Identities = 18/67 (26%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Query: 159 SPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLG-NFRKGVEQF 217
+ + LG A +LG + AI++Y +A+ELD + +L LG ++ + +E
Sbjct: 2 NAEALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALEDL 61
Query: 218 QLALKIS 224
+ AL++
Sbjct: 62 EKALELD 68
|
Length = 69 |
| >gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 9e-04
Identities = 101/444 (22%), Positives = 158/444 (35%), Gaps = 59/444 (13%)
Query: 162 LWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLAL 221
L GLAY LG A KSY +A+ +D S++ L + L F + L
Sbjct: 127 LLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVL 186
Query: 222 KISSENVSAHYGLASGLLGLAKQCINLGAFRWGASLLEDACKV--AEANTRLAGNMSCIW 279
NV A LL L + L A+R +L + V A A +
Sbjct: 187 TADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEA 246
Query: 280 KLHGDIQLTYAKCFPWAEERQSL-EFDVETFSASIVSWKTTCLMAAISSKSSYQRALYLA 338
+ H D L A P A ++L +F + + + L A+ S Y AL LA
Sbjct: 247 EKHADALLKKAPNSPLAHYLKALVDFQKKNYEDAR-----ETLQDALKSAPEYLPALLLA 301
Query: 339 PWQANIYTDIAITSDLIYSLNEAYGH------YQSAWHVSEKMALGALLLEGDNCQFWVT 392
+ + +L +AY + Y H + ++ L G + T
Sbjct: 302 ----------GASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIAT 351
Query: 393 LGCLSNYNGLKQHALIRGLQLDVSLADAWAHIGKLYGEVGEKKLARQAFDSARSIDPSLA 452
L L LD A + +G+ Y +G+ + A + A +DP A
Sbjct: 352 LS--------------PALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENA 397
Query: 453 LPWA--GMSADVQASESLVDDAFESCLRAVQILPLAEFQIGLAKLAKLSGHLSSSQ---V 507
G+S Q S +A A Q + ++G A L + +L S Q
Sbjct: 398 AARTQLGISKLSQGDPS---EAIADLETAAQ----LDPELGRADLLLILSYLRSGQFDKA 450
Query: 508 FGAIQQAIQRGPHYPESHNLYGLVCEARSDYQAAVVSYRLARYAISSSSGTVPNSHFQDI 567
A ++ ++ P HNL G + + D A ++ A S P +
Sbjct: 451 LAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKAL---SIEPDFFPAAA---- 503
Query: 568 SINLARSLSRAGNALDAVRECESL 591
NLAR + GN DA++ E +
Sbjct: 504 --NLARIDIQEGNPDDAIQRFEKV 525
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899 |
| >gnl|CDD|222112 pfam13414, TPR_11, TPR repeat | Back alignment and domain information |
|---|
Score = 37.7 bits (88), Expect = 0.002
Identities = 19/70 (27%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Query: 20 DDPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIK 79
D+ +LG L++ + ++A E + A +L+P NA A+ L Y + D + A++
Sbjct: 1 DNAEALKNLGNALFKLGDY-DEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALE 59
Query: 80 CYQRAVSLSP 89
++A+ L P
Sbjct: 60 DLEKALELDP 69
|
Length = 69 |
| >gnl|CDD|183140 PRK11447, PRK11447, cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 0.003
Identities = 25/107 (23%), Positives = 44/107 (41%), Gaps = 14/107 (13%)
Query: 143 SEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELD------------ 190
+A+ LQ A+R P ALG AY + G + A+ + +A+ LD
Sbjct: 286 GKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESL 345
Query: 191 --DTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLA 235
+ L++ G+ L N + +Q A ++ + + A GL
Sbjct: 346 LKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLG 392
|
Length = 1157 |
| >gnl|CDD|201277 pfam00515, TPR_1, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 35.9 bits (84), Expect = 0.003
Identities = 11/25 (44%), Positives = 18/25 (72%)
Query: 166 LGLAYHRLGMFSAAIKSYGRAIELD 190
LG AY +LG + A++ Y +A+EL+
Sbjct: 7 LGNAYLKLGKYDEALEYYEKALELN 31
|
Length = 34 |
| >gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 0.004
Identities = 58/242 (23%), Positives = 91/242 (37%), Gaps = 29/242 (11%)
Query: 5 GALLLQLEDSLEANPDDPSLHLDLGLHLWENSESKEKAAE-HFVIAAKLN-PQNAV---- 58
A ++QL+++L+ +P+D LG + AAE A L P+N V
Sbjct: 39 KAAIIQLKNALQKDPNDAEARFLLGKIY--LALGDYAAAEKELRKALSLGYPKNQVLPLL 96
Query: 59 AFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPD-DSVSGEALCELLE-----HGGKESLEV 112
A YL Q +Q+ + P + E ELL + G LE+
Sbjct: 97 ARAYLL----------QGK---FQQVLDELPGKTLLDDEGAAELLALRGLAYLGLGQLEL 143
Query: 113 --VVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAY 170
+A PR+ +A L L L ++ EA + + P + G
Sbjct: 144 AQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLL 203
Query: 171 HRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSA 230
LG A+ +Y +AI L +I LL I + G F + + LK + + A
Sbjct: 204 LSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLA 263
Query: 231 HY 232
HY
Sbjct: 264 HY 265
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1173 | |||
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 100.0 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 100.0 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 100.0 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 100.0 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 100.0 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 100.0 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 100.0 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 100.0 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 100.0 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 100.0 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.98 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.96 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.96 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.96 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.95 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.95 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.95 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 99.95 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.94 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.94 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 99.93 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.92 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.92 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.92 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.9 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 99.9 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.9 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.89 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.89 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.89 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.88 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.88 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.88 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.88 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.87 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.87 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 99.86 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 99.86 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.86 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.85 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.85 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.85 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 99.84 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.83 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.82 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.81 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.8 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.79 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.78 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.78 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.78 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.77 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.77 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.76 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.75 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.75 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.75 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.74 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.74 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.72 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 99.71 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.7 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.69 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.69 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.69 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.67 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.67 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.67 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 99.66 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.65 | |
| PLN02789 | 320 | farnesyltranstransferase | 99.65 | |
| PLN02789 | 320 | farnesyltranstransferase | 99.65 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.63 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.62 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.61 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.59 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.59 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 99.58 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 99.58 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.56 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.54 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.53 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.53 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.51 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 99.49 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 99.48 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.48 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.47 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 99.41 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 99.41 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.36 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 99.35 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 99.34 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 99.32 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 99.3 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.28 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.28 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 99.27 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 99.27 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 99.27 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.25 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 99.24 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 99.23 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 99.22 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.22 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 99.2 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 99.19 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 99.18 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 99.11 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 99.11 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 99.11 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 99.1 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 99.08 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 99.06 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 99.04 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 99.01 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 99.0 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.99 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 98.99 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 98.89 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.88 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 98.86 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.85 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 98.84 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 98.84 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 98.84 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.81 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 98.8 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 98.77 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.76 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 98.76 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.76 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.75 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 98.73 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 98.71 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 98.71 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 98.7 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.7 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 98.69 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 98.67 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 98.67 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.67 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 98.66 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.66 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 98.66 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 98.63 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 98.62 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 98.62 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 98.62 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 98.62 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.61 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 98.6 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 98.6 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 98.58 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 98.57 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.56 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 98.55 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 98.49 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 98.48 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 98.48 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 98.47 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 98.46 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 98.45 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 98.45 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 98.43 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 98.41 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 98.4 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 98.4 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.39 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 98.38 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 98.37 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.35 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.33 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 98.29 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.27 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 98.25 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.24 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 98.23 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 98.23 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 98.22 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 98.2 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 98.19 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 98.17 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 98.15 | |
| KOG2471 | 696 | consensus TPR repeat-containing protein [General f | 98.15 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 98.15 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 98.14 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 98.13 | |
| KOG2300 | 629 | consensus Uncharacterized conserved protein [Funct | 98.12 | |
| KOG2471 | 696 | consensus TPR repeat-containing protein [General f | 98.12 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 98.11 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 98.08 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 98.07 | |
| KOG2300 | 629 | consensus Uncharacterized conserved protein [Funct | 98.07 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 98.05 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 98.02 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 97.99 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 97.98 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 97.98 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 97.98 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.96 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 97.93 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 97.92 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 97.91 | |
| KOG0128 | 881 | consensus RNA-binding protein SART3 (RRM superfami | 97.9 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 97.8 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 97.78 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.78 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 97.76 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 97.74 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.73 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 97.72 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 97.71 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 97.7 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 97.69 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 97.68 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 97.62 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 97.6 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 97.58 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 97.58 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 97.56 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 97.54 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.53 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.51 | |
| KOG4507 | 886 | consensus Uncharacterized conserved protein, conta | 97.43 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 97.4 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 97.39 | |
| KOG0545 | 329 | consensus Aryl-hydrocarbon receptor-interacting pr | 97.39 | |
| KOG0530 | 318 | consensus Protein farnesyltransferase, alpha subun | 97.36 | |
| KOG0530 | 318 | consensus Protein farnesyltransferase, alpha subun | 97.33 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 97.31 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 97.3 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 97.27 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 97.25 | |
| KOG4507 | 886 | consensus Uncharacterized conserved protein, conta | 97.25 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 97.23 | |
| KOG4642 | 284 | consensus Chaperone-dependent E3 ubiquitin protein | 97.2 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 97.19 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 97.13 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 97.13 | |
| KOG4642 | 284 | consensus Chaperone-dependent E3 ubiquitin protein | 97.08 | |
| KOG0376 | 476 | consensus Serine-threonine phosphatase 2A, catalyt | 97.03 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 97.01 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 96.96 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.96 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 96.96 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 96.94 | |
| KOG0545 | 329 | consensus Aryl-hydrocarbon receptor-interacting pr | 96.89 | |
| KOG0376 | 476 | consensus Serine-threonine phosphatase 2A, catalyt | 96.81 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 96.8 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 96.74 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.71 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 96.66 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 96.65 | |
| KOG2396 | 568 | consensus HAT (Half-A-TPR) repeat-containing prote | 96.65 | |
| KOG2396 | 568 | consensus HAT (Half-A-TPR) repeat-containing prote | 96.64 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 96.56 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 96.55 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 96.53 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.52 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 96.51 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 96.48 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 96.47 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 96.43 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.42 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 96.41 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 96.39 | |
| PF08424 | 321 | NRDE-2: NRDE-2, necessary for RNA interference; In | 96.32 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 96.31 | |
| KOG0551 | 390 | consensus Hsp90 co-chaperone CNS1 (contains TPR re | 96.27 | |
| COG0790 | 292 | FOG: TPR repeat, SEL1 subfamily [General function | 96.25 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 96.08 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 95.98 | |
| PF08424 | 321 | NRDE-2: NRDE-2, necessary for RNA interference; In | 95.88 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 95.8 | |
| COG0790 | 292 | FOG: TPR repeat, SEL1 subfamily [General function | 95.77 | |
| PRK13184 | 932 | pknD serine/threonine-protein kinase; Reviewed | 95.75 | |
| KOG1308 | 377 | consensus Hsp70-interacting protein Hip/Transient | 95.75 | |
| PF04910 | 360 | Tcf25: Transcriptional repressor TCF25; InterPro: | 95.6 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 95.58 | |
| KOG1308 | 377 | consensus Hsp70-interacting protein Hip/Transient | 95.23 | |
| KOG0551 | 390 | consensus Hsp90 co-chaperone CNS1 (contains TPR re | 95.14 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 95.12 | |
| PF04781 | 111 | DUF627: Protein of unknown function (DUF627); Inte | 95.05 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 94.76 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 94.72 | |
| PF04910 | 360 | Tcf25: Transcriptional repressor TCF25; InterPro: | 94.65 | |
| KOG0128 | 881 | consensus RNA-binding protein SART3 (RRM superfami | 94.5 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 94.37 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 94.29 | |
| PF14561 | 90 | TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S | 94.22 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 94.21 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 94.11 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 93.8 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 93.6 | |
| PF14561 | 90 | TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S | 93.5 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 93.41 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 93.32 | |
| PF09986 | 214 | DUF2225: Uncharacterized protein conserved in bact | 93.26 | |
| KOG3824 | 472 | consensus Huntingtin interacting protein HYPE [Gen | 93.19 | |
| KOG3807 | 556 | consensus Predicted membrane protein ST7 (tumor su | 93.18 | |
| PF12968 | 144 | DUF3856: Domain of Unknown Function (DUF3856); Int | 93.05 | |
| smart00028 | 34 | TPR Tetratricopeptide repeats. Repeats present in | 92.86 | |
| PRK10941 | 269 | hypothetical protein; Provisional | 92.84 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 92.78 | |
| PRK10941 | 269 | hypothetical protein; Provisional | 92.38 | |
| COG5159 | 421 | RPN6 26S proteasome regulatory complex component [ | 92.21 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 92.21 | |
| KOG3824 | 472 | consensus Huntingtin interacting protein HYPE [Gen | 91.92 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 91.86 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 91.84 | |
| PF04781 | 111 | DUF627: Protein of unknown function (DUF627); Inte | 91.65 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 91.17 | |
| COG3914 | 620 | Spy Predicted O-linked N-acetylglucosamine transfe | 90.97 | |
| KOG3783 | 546 | consensus Uncharacterized conserved protein [Funct | 90.92 | |
| PF12968 | 144 | DUF3856: Domain of Unknown Function (DUF3856); Int | 90.75 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 90.57 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 90.49 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 90.43 | |
| smart00028 | 34 | TPR Tetratricopeptide repeats. Repeats present in | 90.38 | |
| KOG2422 | 665 | consensus Uncharacterized conserved protein [Funct | 90.36 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 90.0 | |
| KOG3783 | 546 | consensus Uncharacterized conserved protein [Funct | 90.0 | |
| COG3914 | 620 | Spy Predicted O-linked N-acetylglucosamine transfe | 89.86 | |
| KOG1463 | 411 | consensus 26S proteasome regulatory complex, subun | 89.74 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 89.72 | |
| KOG1839 | 1236 | consensus Uncharacterized protein CLU1/cluA/TIF31 | 89.71 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 88.97 | |
| PF09986 | 214 | DUF2225: Uncharacterized protein conserved in bact | 88.95 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 88.52 | |
| KOG3364 | 149 | consensus Membrane protein involved in organellar | 88.24 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 88.12 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 87.57 | |
| KOG0529 | 421 | consensus Protein geranylgeranyltransferase type I | 87.46 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 87.3 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 86.62 | |
| PF12862 | 94 | Apc5: Anaphase-promoting complex subunit 5 | 86.58 | |
| KOG3364 | 149 | consensus Membrane protein involved in organellar | 86.42 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 86.31 | |
| KOG1839 | 1236 | consensus Uncharacterized protein CLU1/cluA/TIF31 | 86.28 | |
| KOG4814 | 872 | consensus Uncharacterized conserved protein [Funct | 86.11 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 85.71 | |
| KOG0529 | 421 | consensus Protein geranylgeranyltransferase type I | 85.43 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 84.3 | |
| COG5191 | 435 | Uncharacterized conserved protein, contains HAT (H | 84.21 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 84.16 | |
| KOG2422 | 665 | consensus Uncharacterized conserved protein [Funct | 83.86 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 83.48 | |
| COG5191 | 435 | Uncharacterized conserved protein, contains HAT (H | 83.35 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 82.62 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 82.53 | |
| COG5159 | 421 | RPN6 26S proteasome regulatory complex component [ | 82.3 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 82.21 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 81.54 | |
| PF00244 | 236 | 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14 | 81.4 |
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-69 Score=620.11 Aligned_cols=1094 Identities=38% Similarity=0.540 Sum_probs=778.9
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH--ccCCHHHHHHHH
Q 045024 4 KGALLLQLEDSLEANPDDPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTR--FSIDTQRAIKCY 81 (1173)
Q Consensus 4 ~~aAi~~l~~al~~~P~~~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~--~~g~~~eA~~~~ 81 (1173)
++.|++..+++++.+|++..+++.+|..++..+++.++|.+.|..+.+++|++.-+|..++..|.. -..+++++-.+|
T Consensus 18 YeealEqskkvLk~dpdNYnA~vFLGvAl~sl~q~le~A~ehYv~AaKldpdnlLAWkGL~nLye~~~dIl~ld~~~~~y 97 (1238)
T KOG1127|consen 18 YEEALEQSKKVLKEDPDNYNAQVFLGVALWSLGQDLEKAAEHYVLAAKLDPDNLLAWKGLGNLYERYNDILDLDRAAKCY 97 (1238)
T ss_pred HHHHHHHHHHHHhcCCCcchhhhHHHHHHHhccCCHHHHHHHHHHHHhcChhhhHHHHHHHHHHHccchhhhhhHhHHHH
Confidence 344599999999999999999999999999999889999999999999999999999999999987 134578899999
Q ss_pred HHHHhhCCCCH-HHHHHHHHHHHHC-----------CCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 045024 82 QRAVSLSPDDS-VSGEALCELLEHG-----------GKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSL 149 (1173)
Q Consensus 82 ~~al~~~p~~~-~a~~~La~~~~~~-----------g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l 149 (1173)
++++...|+.. .-+..+...+-.+ ....+-..+-+...+.+|.-.+++..++.+......++.+.+..
T Consensus 98 q~~~l~le~q~~nk~~~lcKk~~d~~~~fk~hll~a~eigei~~trq~~se~N~~k~~a~~rl~Qi~l~~~~wei~k~S~ 177 (1238)
T KOG1127|consen 98 QRAVLILENQSKNKGEALCKKFDDQYYQFKKHLLVAKEIGEIAVTRQDASEKNPKKFWAFCRLGQIQLHQKKWEIAKQSL 177 (1238)
T ss_pred HHHHHhhhhhhhhHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHhchHhhhhhCHHHHHhhCchHHHHhhhhhHHHHhcCH
Confidence 99988877654 3333333222211 11222222333556667777888999999999999999999999
Q ss_pred HHHHHhCCCCHHHHH-----HHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH--------HHcCChHHHHHH
Q 045024 150 QHAIRGYPTSPHLWE-----ALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIF--------LMLGNFRKGVEQ 216 (1173)
Q Consensus 150 ~~al~~~p~~~~~~~-----~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~--------~~~g~~~~A~~~ 216 (1173)
+.++...|.+...+- ..+..|...+.+-.+...+.+.++..-....+.+.-+..| ..-.+.++..++
T Consensus 178 q~~lynq~~n~~l~D~irse~e~~ly~~~~m~l~~kkh~~~rik~~~egMv~l~~~~q~yfEwld~~di~~~~t~e~q~Y 257 (1238)
T KOG1127|consen 178 QHALYNQPTNSDLWDKIRSEAEGLLYQRLGMFLAAKKHYGRRIKLDEEGMVALVESAQYYFEWLDSHDIEGNLTDEGQQY 257 (1238)
T ss_pred HHHHhcchhhhcchhhcchhHHHHHHHHhhhhHhhhhhHHHHHHHHHhchheechhhhhhhhhhhhhhhcccccHHHHHH
Confidence 999888887665554 6677788889998898888888776543222222112222 222333455555
Q ss_pred HHHHHhh----------cCCCHHHHHHHHHHHHHHH-----HHHHH-hhcHHHHHHHHHHHHHHHHHHh-------hhcC
Q 045024 217 FQLALKI----------SSENVSAHYGLASGLLGLA-----KQCIN-LGAFRWGASLLEDACKVAEANT-------RLAG 273 (1173)
Q Consensus 217 ~~~al~~----------~p~~~~a~~~la~~~~~l~-----~~~~a-~g~~~~A~~~l~~Al~~~~~~~-------~~~~ 273 (1173)
++..... .|.+....+.++....... ..+.. .+.+++|....++..+...... ....
T Consensus 258 ~k~fpg~pla~~l~~i~hpi~~~~~~~~a~~~~n~~E~d~se~cv~~k~~~eea~s~~e~p~davla~s~ea~~v~~l~~ 337 (1238)
T KOG1127|consen 258 RKVFPGVPLAEQLLKISHPINISVLYGLASGLLNLTELDWSEECVNLKGAFEEAASLLEDPRDAVLASSEEASSVSNLGA 337 (1238)
T ss_pred HHhcCCCchHHHHHHhcCCccHHhhcchhhhhhccchhhcchhhhcccchhHHHHHhhhccHHHHHhhhhHHhhhccchh
Confidence 4443211 1322222223333322111 11111 1445556555554444332221 1111
Q ss_pred ChHHHHH---HhchHHHHH---hhccchhhhhhchhhhhhhhhhhhHhhHhhhhHHHHHHHHHHHHHHhcCCCCHHHHHH
Q 045024 274 NMSCIWK---LHGDIQLTY---AKCFPWAEERQSLEFDVETFSASIVSWKTTCLMAAISSKSSYQRALYLAPWQANIYTD 347 (1173)
Q Consensus 274 ~~~~~~~---~~g~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~ 347 (1173)
.....|. ..++.+... ..++++......-.+........++.+...++...-.|-..++++..+.|.....|..
T Consensus 338 ~i~~c~~~~lLhlKeye~a~~~~~~~~~d~gv~Ld~~tl~laiP~~l~~as~~Ydn~lSaD~sn~~akgl~~ie~~~y~D 417 (1238)
T KOG1127|consen 338 SINCCWKRNLLHLKEYETAKLSARCFPWDGGVELDEFTLKLAIPSILSWASICYDNALSADASNQRAKGLAPIEANVYTD 417 (1238)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHhChHhhCcccchhhhhhcCcHHHHHHHHHHHHhhcCChhhhhhcchhHHHHhhchH
Confidence 2223333 444444443 4455555544433333344444455544444433333333334444444444444555
Q ss_pred HHHHHHHHhhHHHhh-hhhhhhhHHH---HHHHHHHHhhcCCCHHHHHHHHHhhcccHHHHHHHHHHHhcCCCcHHHHHH
Q 045024 348 IAITSDLIYSLNEAY-GHYQSAWHVS---EKMALGALLLEGDNCQFWVTLGCLSNYNGLKQHALIRGLQLDVSLADAWAH 423 (1173)
Q Consensus 348 la~~~~~~g~~~eA~-~~~~~~~~~A---~k~~~~al~~~p~~~~~~~~Lg~~~~~~~~a~~a~~kal~l~p~~~~a~~~ 423 (1173)
.+.++.......... ...+-.|-.+ +++..-+.-........|..++.+-.+...+.++|.+++.++|.-+.+|..
T Consensus 418 aa~tl~lv~~~s~nd~slselswc~~~~~ek~mdva~~~~~e~~~~w~a~~~~rK~~~~al~ali~alrld~~~apaf~~ 497 (1238)
T KOG1127|consen 418 AAITLDLVSSLSFNDDSLSELSWCLPRALEKMMDVALLLECENSEFWVALGCMRKNSALALHALIRALRLDVSLAPAFAF 497 (1238)
T ss_pred HHHHHHHHHHhhcCchhhhHhhHHHHHhHHhhhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcccchhHHHHH
Confidence 444443322221100 1112223333 333333333444456667777777778888999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCChhHHHHhHHHHHHhcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCCC
Q 045024 424 IGKLYGEVGEKKLARQAFDSARSIDPSLALPWAGMSADVQASESLVDDAFESCLRAVQILPLAEFQIGLAKLAKLSGHLS 503 (1173)
Q Consensus 424 Lg~~y~~~g~~e~A~~~f~~al~~~P~~~~a~~~l~a~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~la~l~~~~g~~~ 503 (1173)
||.+|....+...|..+|++|.++||.+..++-. .+..|.+..++++|.....++-+..|-.
T Consensus 498 LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa-~adtyae~~~we~a~~I~l~~~qka~a~----------------- 559 (1238)
T KOG1127|consen 498 LGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAA-SADTYAEESTWEEAFEICLRAAQKAPAF----------------- 559 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHH-HHHHhhccccHHHHHHHHHHHhhhchHH-----------------
Confidence 9999999999999999999999999999999999 8899999999999999866665555411
Q ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHHHhcCCHHH
Q 045024 504 SSQVFGAIQQAIQRGPHYPESHNLYGLVCEARSDYQAAVVSYRLARYAISSSSGTVPNSHFQDISINLARSLSRAGNALD 583 (1173)
Q Consensus 504 ~~~A~~~l~~al~~~P~~~~a~~~lg~i~~~~g~~~~A~~~~~kAl~l~~~~pe~~~~~~~~~~~~~La~~~~~~g~~~e 583 (1173)
.....|..+|..|...++...|+..|+.++ ..+|. ....|..+|.+|.+.|++..
T Consensus 560 ----------------~~k~nW~~rG~yyLea~n~h~aV~~fQsAL---R~dPk------D~n~W~gLGeAY~~sGry~~ 614 (1238)
T KOG1127|consen 560 ----------------ACKENWVQRGPYYLEAHNLHGAVCEFQSAL---RTDPK------DYNLWLGLGEAYPESGRYSH 614 (1238)
T ss_pred ----------------HHHhhhhhccccccCccchhhHHHHHHHHh---cCCch------hHHHHHHHHHHHHhcCceeh
Confidence 012233446777777778888888888774 33333 33477788888888888888
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHhhhcccc--ccchhhhhHHHHHHHHHHhcChhhhhHHh
Q 045024 584 AVRECESLERQGMLDAEVLQVYAFSLWQLGKYDLALSMARNLASSVSAM--EQSSAAASVSFICRLLYHISGLDSTINSI 661 (1173)
Q Consensus 584 Ai~~~~~~~~~~p~~~~~~~~la~a~~~~g~~~eA~~~~~~aL~~~p~~--~~~~~~~~~~~la~l~~~~g~~~~A~~~l 661 (1173)
|++.|.++...+|.+..+.+..+.+....|+|.+|+..++..+...... .+....+.+..++..++..|-...+.+.+
T Consensus 615 AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~ 694 (1238)
T KOG1127|consen 615 ALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFF 694 (1238)
T ss_pred HHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 8888888877788887777777888888888888888777766543311 11122344455555555555444444333
Q ss_pred hhCCCCccccchhHHHHHHhhhccCccchHHHHhc-cccc-ccCCccchhhHHHHHHHHhhhCCCC----C--ccccchh
Q 045024 662 LKMPKGLFQCSKMSFIVSAIHALDHSNRLESVVSS-SRNC-IASPEEITGMHYLVALNKLVKNGPE----S--CLGFNSG 733 (1173)
Q Consensus 662 ~~~p~~~~~~~~~~~~l~~l~~l~~~~~~~~a~~~-~~~~-~~~~~~~a~~~~l~a~~~~~~~~~~----~--~~~~~~A 733 (1173)
++ +...+.......+..+.-.-..+.. .... ...|+ .+.+|++..+.....+... . .++++-.
T Consensus 695 ek--------sie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e~~-~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~ 765 (1238)
T KOG1127|consen 695 EK--------SIESFIVSLIHSLQSDRLQWIVASDACYIFSQEEPS-IVNMHYLIILSKQLEKTGALKKNDLLFLGYECG 765 (1238)
T ss_pred HH--------HHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhccc-chHHHHHHHHHHHHHhcccCcchhHHHHHHHHh
Confidence 33 2222222222221111111111111 0001 11133 6677877777663222221 1 2345677
Q ss_pred HHHHHHHHhcCCCcHHHHHHHHHHhccCCcccchhhhhhccccCCCcccccCCCcchhHHhhc-cceeeeeccccccccc
Q 045024 734 IFHLRKVLHVYPNCNLIRNLLGYLLLSSDEWRYSHVASRCCSLETSDCIKKEGPKSAWEILGA-EGVACNVIGSVDLKFS 812 (1173)
Q Consensus 734 i~~l~k~l~~~P~~~~~~~~La~ll~~~~~~~~a~~a~ra~~l~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~ 812 (1173)
+.++..+.+++|......+-+..++.-.....+...|.+|+..+..-.+++.++..+..|+.- ..+.|..-+.+-++|+
T Consensus 766 ~~hlsl~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVlsg~gnva~aQHCfIks~~s 845 (1238)
T KOG1127|consen 766 IAHLSLAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLCANNEGLWNALGVLSGIGNVACAQHCFIKSRFS 845 (1238)
T ss_pred hHHHHHhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHhhccchhhhhhhhhhhhhhc
Confidence 888888888777665555555555554455555578999999888888888887777777733 6677777777788899
Q ss_pred CccccccccCChhHHHHHHHHhhcCCCCchhhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHhcccccccchhhhhHHH
Q 045024 813 FPTCIYEHLTGPKAVQELQKCLHREPWNYNVRYLLVLNLLQKAREERFPRHLCTILQRLIHVALSCEFYSIQHTSYQYQK 892 (1173)
Q Consensus 813 ~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 892 (1173)
+|+|..+..|-..-.-..++.-|.+|-+..++++...+.|+..++..+|.++|||+++......|+++.+.++ .+.+
T Consensus 846 ep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~g---ka~~ 922 (1238)
T KOG1127|consen 846 EPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEG---KAKK 922 (1238)
T ss_pred cccchhheeccceeEEecccHHHhhHHHHhhhhcCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhcccc---ccch
Confidence 9999998888532233357888889999999999999999999999999999999999999999999777664 6789
Q ss_pred HHHHHhhhhhccccCccchHHHHHHHhhccCCcchhhhhHHHHHHHHHHhhCCchhhHHHHHHHHhhcccchhhHHHHHH
Q 045024 893 FQLLLCASEISLQGGNITGCINHAKSASALLLPDAYRFFGHLLLSRAYAAEGNMLNLQDEYVRCLELKTDYVIGWMCLKV 972 (1173)
Q Consensus 893 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 972 (1173)
|+.|+|.+++++|.|+++.-|+++.|+.+...+..+-|-.|.++|+||.+.|.+.+...||..|+++.|+ .|||+++|+
T Consensus 923 f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~R-liglLe~k~ 1001 (1238)
T KOG1127|consen 923 FQYWLCATEIHLQNGNIEESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATR-LIGLLELKL 1001 (1238)
T ss_pred hhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999 999999999
Q ss_pred HHhhhc-ccccccccccchHHHHhcCCCcchhHHHHHHHHhhhhhhc--ccccccHHHHHHHHhhhcCCCce--eehhcc
Q 045024 973 VESLYE-VQADTNTIELSFNECLKQGNNSRLIWTAKFNLVLGFVFLW--KKDFFSAEKCLAQACSLAGAESC--LFLCHG 1047 (1173)
Q Consensus 973 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 1047 (1173)
-+++++ ..++-+.+++++++|-+.++++++.||++.+...|..+.- .+||+++++++.||||..+.++| +++|||
T Consensus 1002 d~sqynvak~~~gRL~lslgefe~A~~a~~~~~~evdEdi~gt~l~lFfkndf~~sl~~fe~aLsis~se~d~vvLl~kv 1081 (1238)
T KOG1127|consen 1002 DESQYNVAKPDAGRLELSLGEFESAKKASWKEWMEVDEDIRGTDLTLFFKNDFFSSLEFFEQALSISNSESDKVVLLCKV 1081 (1238)
T ss_pred hhhhhhhhhhhhhhhhhhhcchhhHhhhhcccchhHHHHHhhhhHHHHHHhHHHHHHHHHHHHhhhcccccchhhhhHHH
Confidence 999999 7889999999999999999999999999999999998887 99999999999999999999999 999999
Q ss_pred hhHHHHHHhhcCchhHHHHHHHHHHHHHhcCcccchHHHHHHhhhcCCCcHHHHHHhhhhhhccCCCCCCchhHHHHHHH
Q 045024 1048 TICMEIARQYHDSHFLSLAVRSLTKAQKTSFVQLPVVSLLLAQAEGSLSSIEKWEKNLRLEWFTWPPEMRPAELFFQMHL 1127 (1173)
Q Consensus 1048 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1127 (1173)
++||+.+|+..+++|+.-.+++++++|-.|+.+||.|++|.++|++|.|++++|+|++++|||+|||...--++
T Consensus 1082 a~~~g~~~~k~~A~~lLfe~~~ls~~~~~sll~L~A~~ild~da~~ssaileel~kl~k~e~~~~~~~ll~e~i------ 1155 (1238)
T KOG1127|consen 1082 AVCMGLARQKNDAQFLLFEVKSLSKVQASSLLPLPAVYILDADAHGSSAILEELEKLLKLEWFCWPPGLLKELI------ 1155 (1238)
T ss_pred HHHHhhcccchHHHHHHHHHHHhCccchhhHHHHHHHHHHhhhhhhhHHHHHHHHHhhhhHHhccChhHHHHHH------
Confidence 99999999999999999999999999999999999999999999999999999999999999999997654443
Q ss_pred HHhhhhcCCCCCCccccccchhHHHHHHhhcCcchhhHHHHHH
Q 045024 1128 LAMLSKAGSDSSSRVEFCQSPQKWVLRAIHTNPSCLRYWKVLH 1170 (1173)
Q Consensus 1128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1170 (1173)
+++|-.... -.+=+.|+.|-||-=..-|..|.
T Consensus 1156 ~~~~~r~~~-----------vk~~~qr~~h~~P~~~~~WslL~ 1187 (1238)
T KOG1127|consen 1156 YALQGRSVA-----------VKKQIQRAVHSNPGDPALWSLLS 1187 (1238)
T ss_pred HHHhhhhHH-----------HHHHHHHHHhcCCCChHHHHHHH
Confidence 455543222 23457899999999999999874
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-50 Score=524.08 Aligned_cols=871 Identities=17% Similarity=0.111 Sum_probs=682.9
Q ss_pred CCHHHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 045024 20 DDPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALC 99 (1173)
Q Consensus 20 ~~~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La 99 (1173)
.++..++..|..++.+|+ +++|+..|+++++.+|+++.+++.+|.++.. .|++++|+..++++++..|.+......++
T Consensus 20 ~~~~~~~~~a~~~~~~~~-~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~a 97 (899)
T TIGR02917 20 QSPESLIEAAKSYLQKNK-YKAAIIQLKNALQKDPNDAEARFLLGKIYLA-LGDYAAAEKELRKALSLGYPKNQVLPLLA 97 (899)
T ss_pred CCHHHHHHHHHHHHHcCC-hHhHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHcCCChhhhHHHHH
Confidence 378889999999999987 9999999999999999999999999999999 99999999999999999999999999999
Q ss_pred HHHHHCCCHHHHHHHHHHHH-hhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Q 045024 100 ELLEHGGKESLEVVVCREAS-DKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSA 178 (1173)
Q Consensus 100 ~~~~~~g~~~~A~~~~~~al-~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~ 178 (1173)
.++...|++++|+..+.++. ...|.....+..+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++
T Consensus 98 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~ 177 (899)
T TIGR02917 98 RAYLLQGKFQQVLDELPGKTLLDDEGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDE 177 (899)
T ss_pred HHHHHCCCHHHHHHhhcccccCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHCCCHHH
Confidence 99999999999999998775 34556778899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHH
Q 045024 179 AIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLASGLLGLAKQCINLGAFRWGASLL 258 (1173)
Q Consensus 179 A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~l~~~~~a~g~~~~A~~~l 258 (1173)
|++.++++++.+|.+..++..+|.++...|++++|+..|+++++.+|+++..+..++.++...|+ +++|...+
T Consensus 178 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~g~-------~~~A~~~~ 250 (899)
T TIGR02917 178 ARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNPAVLLALATILIEAGE-------FEEAEKHA 250 (899)
T ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC-------HHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999988888888877665 55555555
Q ss_pred HHHHHHHHHHhhhcCChHHHHHHhchHHHHHhhccchhhhhhchhhhhhhhhhhhHhhHhhhhHHHHHHHHHHHHHHhcC
Q 045024 259 EDACKVAEANTRLAGNMSCIWKLHGDIQLTYAKCFPWAEERQSLEFDVETFSASIVSWKTTCLMAAISSKSSYQRALYLA 338 (1173)
Q Consensus 259 ~~Al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~ 338 (1173)
+.+++. .+.....+...+.+.. ..+++++|+..|+++++.+
T Consensus 251 ~~~~~~-------~~~~~~~~~~~~~~~~--------------------------------~~~~~~~A~~~~~~~l~~~ 291 (899)
T TIGR02917 251 DALLKK-------APNSPLAHYLKALVDF--------------------------------QKKNYEDARETLQDALKSA 291 (899)
T ss_pred HHHHHh-------CCCCchHHHHHHHHHH--------------------------------HhcCHHHHHHHHHHHHHhC
Confidence 554443 3333333333332222 2344678999999999999
Q ss_pred CCCHHHHHHHHHHHHHHhhHHHhhhhhhhhhHHHHHHHHHHHhhcCCCHHHHHHHHHhhc---ccHHHHHHHHHHHhcCC
Q 045024 339 PWQANIYTDIAITSDLIYSLNEAYGHYQSAWHVSEKMALGALLLEGDNCQFWVTLGCLSN---YNGLKQHALIRGLQLDV 415 (1173)
Q Consensus 339 p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~A~k~~~~al~~~p~~~~~~~~Lg~~~~---~~~~a~~a~~kal~l~p 415 (1173)
|++...+..+|.++...|++++| ...+.+++...|.+...+..++.++. +...+...+.+++..+|
T Consensus 292 ~~~~~~~~~~~~~~~~~g~~~~A-----------~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~ 360 (899)
T TIGR02917 292 PEYLPALLLAGASEYQLGNLEQA-----------YQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLDP 360 (899)
T ss_pred CCchhHHHHHHHHHHHcCCHHHH-----------HHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 99998999999999999999887 45567888889999988888888776 55577788999999999
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhHHHHhHHHHHHhcCCHHHHHHHHHHHHhcCCc-hHHHHHHHH
Q 045024 416 SLADAWAHIGKLYGEVGEKKLARQAFDSARSIDPSLALPWAGMSADVQASESLVDDAFESCLRAVQILPL-AEFQIGLAK 494 (1173)
Q Consensus 416 ~~~~a~~~Lg~~y~~~g~~e~A~~~f~~al~~~P~~~~a~~~l~a~~~~~~g~~~eA~~~~~~al~~~p~-~~~~~~la~ 494 (1173)
.++.++..+|.++...|++++|...|+++++.+|+++..+.. .+.++...|++++|+..++++++..|. ......++.
T Consensus 361 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~ 439 (899)
T TIGR02917 361 DDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQ-LGISKLSQGDPSEAIADLETAAQLDPELGRADLLLIL 439 (899)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHH-HHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHH
Confidence 999999999999999999999999999999999999988888 677888999999999999999999884 345555666
Q ss_pred HHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHH
Q 045024 495 LAKLSGHLSSSQVFGAIQQAIQRGPHYPESHNLYGLVCEARSDYQAAVVSYRLARYAISSSSGTVPNSHFQDISINLARS 574 (1173)
Q Consensus 495 l~~~~g~~~~~~A~~~l~~al~~~P~~~~a~~~lg~i~~~~g~~~~A~~~~~kAl~l~~~~pe~~~~~~~~~~~~~La~~ 574 (1173)
.....|+ .++|+..+++.+...|+++.++..+|.++...|++++|+..|+++++. .|+ ...+++.+|.+
T Consensus 440 ~~~~~~~--~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~---~~~------~~~~~~~la~~ 508 (899)
T TIGR02917 440 SYLRSGQ--FDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSI---EPD------FFPAAANLARI 508 (899)
T ss_pred HHHhcCC--HHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhh---CCC------cHHHHHHHHHH
Confidence 6666666 578999999999999999999999999999999999999999998643 333 34488999999
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHhhhccccccchhhhhHHHHHHHHHHhcCh
Q 045024 575 LSRAGNALDAVRECESLERQGMLDAEVLQVYAFSLWQLGKYDLALSMARNLASSVSAMEQSSAAASVSFICRLLYHISGL 654 (1173)
Q Consensus 575 ~~~~g~~~eAi~~~~~~~~~~p~~~~~~~~la~a~~~~g~~~eA~~~~~~aL~~~p~~~~~~~~~~~~~la~l~~~~g~~ 654 (1173)
+...|++++|++.|+++++.+|.+..++..++.++...|++++|+..|+++++..| ........++.++...|+.
T Consensus 509 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~ 583 (899)
T TIGR02917 509 DIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNP-----QEIEPALALAQYYLGKGQL 583 (899)
T ss_pred HHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-----cchhHHHHHHHHHHHCCCH
Confidence 99999999999999999999999999999999999999999999999999998776 3446777889999999999
Q ss_pred hhhhHHhhhCCCCccccchhHHHHHHhhhccCccchHHHHhcccccccCCccchhhHHHHHHHHhhhCCCCCccccchhH
Q 045024 655 DSTINSILKMPKGLFQCSKMSFIVSAIHALDHSNRLESVVSSSRNCIASPEEITGMHYLVALNKLVKNGPESCLGFNSGI 734 (1173)
Q Consensus 655 ~~A~~~l~~~p~~~~~~~~~~~~l~~l~~l~~~~~~~~a~~~~~~~~~~~~~~a~~~~l~a~~~~~~~~~~~~~~~~~Ai 734 (1173)
++|...+++.......+......++.+. ...++..+++..........+.....+..++......++. ++|+
T Consensus 584 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~------~~A~ 655 (899)
T TIGR02917 584 KKALAILNEAADAAPDSPEAWLMLGRAQ--LAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNY------AKAI 655 (899)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHH--HHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCH------HHHH
Confidence 9999766665443323334444443332 2345555565553222221222234455566666656665 8999
Q ss_pred HHHHHHHhcCCCcHHHHHHHHHHhccCCcccchhh-hhhccccCCCcccccCCCcchhHHhhccceeeeecccccccccC
Q 045024 735 FHLRKVLHVYPNCNLIRNLLGYLLLSSDEWRYSHV-ASRCCSLETSDCIKKEGPKSAWEILGAEGVACNVIGSVDLKFSF 813 (1173)
Q Consensus 735 ~~l~k~l~~~P~~~~~~~~La~ll~~~~~~~~a~~-a~ra~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 813 (1173)
..+++++..+|+++..+..++.++...|+++.+.. ..+.....|.++... ..+ ..++......
T Consensus 656 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~-------~~~----~~~~~~~g~~----- 719 (899)
T TIGR02917 656 TSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGF-------ELE----GDLYLRQKDY----- 719 (899)
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHH-------HHH----HHHHHHCCCH-----
Confidence 99999999999999999999999999999876664 333333444333221 111 0011111111
Q ss_pred ccccccccCChhHHHHHHHHhhcCCCCchhhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHhcccccccchhhhhHHHH
Q 045024 814 PTCIYEHLTGPKAVQELQKCLHREPWNYNVRYLLVLNLLQKAREERFPRHLCTILQRLIHVALSCEFYSIQHTSYQYQKF 893 (1173)
Q Consensus 814 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 893 (1173)
++|+..+.+++...|.+ ++.+.++..+....+.+++-..+.++++. ++ .+ .
T Consensus 720 ----------~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~l~~-------~~---~~--------~ 770 (899)
T TIGR02917 720 ----------PAAIQAYRKALKRAPSS-QNAIKLHRALLASGNTAEAVKTLEAWLKT-------HP---ND--------A 770 (899)
T ss_pred ----------HHHHHHHHHHHhhCCCc-hHHHHHHHHHHHCCCHHHHHHHHHHHHHh-------CC---CC--------H
Confidence 45899999999999988 67777777777777666665555544432 11 11 2
Q ss_pred HHHHhhhhhccccCccchHHHHHHHhhccCCcchhhhhHHHHHHHHHHhhCCchhhHHHHHHHHhhcccchhhHHHHHHH
Q 045024 894 QLLLCASEISLQGGNITGCINHAKSASALLLPDAYRFFGHLLLSRAYAAEGNMLNLQDEYVRCLELKTDYVIGWMCLKVV 973 (1173)
Q Consensus 894 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 973 (1173)
..+...++++.+.|+++.|+++.++++..++++. .++..|.++|...|+ ..-.+-|.+-+++.+|...-|..+-.+
T Consensus 771 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~ 846 (899)
T TIGR02917 771 VLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNA---VVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWL 846 (899)
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHH
Confidence 3467788899999999999999999998887653 345567888888998 777777888888777765444444333
Q ss_pred HhhhcccccccccccchHHHHhcCCCcchhHHHHHHHHhhhhhhcccccccHHHHHHH
Q 045024 974 ESLYEVQADTNTIELSFNECLKQGNNSRLIWTAKFNLVLGFVFLWKKDFFSAEKCLAQ 1031 (1173)
Q Consensus 974 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1031 (1173)
. --.++-+.-.-.|+.+++....++.. .+++ |.++...|++..|++.+-.
T Consensus 847 ~---~~~g~~~~A~~~~~~a~~~~~~~~~~---~~~l--~~~~~~~g~~~~A~~~~~~ 896 (899)
T TIGR02917 847 L---VEKGEADRALPLLRKAVNIAPEAAAI---RYHL--ALALLATGRKAEARKELDK 896 (899)
T ss_pred H---HHcCCHHHHHHHHHHHHhhCCCChHH---HHHH--HHHHHHcCCHHHHHHHHHH
Confidence 2 22344444445688888877654433 3333 5567778888888877654
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-49 Score=520.12 Aligned_cols=614 Identities=16% Similarity=0.095 Sum_probs=411.1
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 045024 6 ALLLQLEDSLEANPDDPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAV 85 (1173)
Q Consensus 6 aAi~~l~~al~~~P~~~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al 85 (1173)
.|+..|+++++.+|+++.+++.+|.++...|+ +++|+..|+++++..|.+...+..+|.++.. .|++++|+..+.++.
T Consensus 40 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~-~g~~~~a~~~~~~~~ 117 (899)
T TIGR02917 40 AAIIQLKNALQKDPNDAEARFLLGKIYLALGD-YAAAEKELRKALSLGYPKNQVLPLLARAYLL-QGKFQQVLDELPGKT 117 (899)
T ss_pred hHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHcCCChhhhHHHHHHHHHH-CCCHHHHHHhhcccc
Confidence 35999999999999999999999999999987 9999999999999999999999999999999 999999999998765
Q ss_pred -hhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 045024 86 -SLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWE 164 (1173)
Q Consensus 86 -~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~ 164 (1173)
...|.....+..+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+++++..+|.+..++.
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 197 (899)
T TIGR02917 118 LLDDEGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALL 197 (899)
T ss_pred cCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHH
Confidence 3456667789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHH
Q 045024 165 ALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLASGLLGLAKQ 244 (1173)
Q Consensus 165 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~l~~~ 244 (1173)
.+|.++...|++++|+..|+++++.+|+++.++..++.++...|++++|...++++++..|+++...+..+.++...|
T Consensus 198 ~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 275 (899)
T TIGR02917 198 LKGDLLLSLGNIELALAAYRKAIALRPNNPAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKK-- 275 (899)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhc--
Confidence 999999999999999999999999999999999999999999999999999999999999998887777776666554
Q ss_pred HHHhhcHHHHHHHHHHHHHHHHHHhhhcCChHHHHHHhchHHHHHhhccchhhhhhchhhhhhhhhhhhHhhHhhhhHHH
Q 045024 245 CINLGAFRWGASLLEDACKVAEANTRLAGNMSCIWKLHGDIQLTYAKCFPWAEERQSLEFDVETFSASIVSWKTTCLMAA 324 (1173)
Q Consensus 245 ~~a~g~~~~A~~~l~~Al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 324 (1173)
++++|...++++++..+.........+..+...|+...+...+.......+. ...............++.
T Consensus 276 -----~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~-----~~~~~~~la~~~~~~g~~ 345 (899)
T TIGR02917 276 -----NYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPN-----SHQARRLLASIQLRLGRV 345 (899)
T ss_pred -----CHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----ChHHHHHHHHHHHHCCCH
Confidence 4666666666665543322111111122222222222221111111000000 000011112222333445
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHhhhhhhhhhHHHHHHHHHHHhhcCCCHHHHHHHHHhhc---ccH
Q 045024 325 ISSKSSYQRALYLAPWQANIYTDIAITSDLIYSLNEAYGHYQSAWHVSEKMALGALLLEGDNCQFWVTLGCLSN---YNG 401 (1173)
Q Consensus 325 ~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~A~k~~~~al~~~p~~~~~~~~Lg~~~~---~~~ 401 (1173)
++|+..+++++...|.++.++..++.++...|++++| .+.+.+++...|++...+..+|.++. +..
T Consensus 346 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A-----------~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 414 (899)
T TIGR02917 346 DEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKA-----------AEYLAKATELDPENAAARTQLGISKLSQGDPS 414 (899)
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCHHHH-----------HHHHHHHHhcCCCCHHHHHHHHHHHHhCCChH
Confidence 5555555555555555555555555555555555554 33344555555555555555555444 333
Q ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhHHHHhHHHHHHhcCCHHHHHHHHHHHHh
Q 045024 402 LKQHALIRGLQLDVSLADAWAHIGKLYGEVGEKKLARQAFDSARSIDPSLALPWAGMSADVQASESLVDDAFESCLRAVQ 481 (1173)
Q Consensus 402 ~a~~a~~kal~l~p~~~~a~~~Lg~~y~~~g~~e~A~~~f~~al~~~P~~~~a~~~l~a~~~~~~g~~~eA~~~~~~al~ 481 (1173)
.+.+.|.+++..+|+...+...++..+...|++++|+..+++.....|+++..+.. .+.++...|++++|+..|+++++
T Consensus 415 ~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~A~~~~~~a~~ 493 (899)
T TIGR02917 415 EAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNL-LGAIYLGKGDLAKAREAFEKALS 493 (899)
T ss_pred HHHHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHH-HHHHHHhCCCHHHHHHHHHHHHh
Confidence 45555555555555555555555555555556666655555555555555555554 44455555566666666665555
Q ss_pred cCCc-hHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCCCCC
Q 045024 482 ILPL-AEFQIGLAKLAKLSGHLSSSQVFGAIQQAIQRGPHYPESHNLYGLVCEARSDYQAAVVSYRLARYAISSSSGTVP 560 (1173)
Q Consensus 482 ~~p~-~~~~~~la~l~~~~g~~~~~~A~~~l~~al~~~P~~~~a~~~lg~i~~~~g~~~~A~~~~~kAl~l~~~~pe~~~ 560 (1173)
.+|. ....+.++.+....|+ .++|...+++++..+|++..++..++.++...|++++|+..|++++.. .|++
T Consensus 494 ~~~~~~~~~~~la~~~~~~g~--~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~-- 566 (899)
T TIGR02917 494 IEPDFFPAAANLARIDIQEGN--PDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAEL---NPQE-- 566 (899)
T ss_pred hCCCcHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---Cccc--
Confidence 5552 3344445555444444 345555555555555555555555565555556666666655555322 2222
Q ss_pred CCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHhhhccccccchhhhh
Q 045024 561 NSHFQDISINLARSLSRAGNALDAVRECESLERQGMLDAEVLQVYAFSLWQLGKYDLALSMARNLASSVSAMEQSSAAAS 640 (1173)
Q Consensus 561 ~~~~~~~~~~La~~~~~~g~~~eAi~~~~~~~~~~p~~~~~~~~la~a~~~~g~~~eA~~~~~~aL~~~p~~~~~~~~~~ 640 (1173)
...+..++..+...|++++|+..++++.+..|.++..+..+|.++...|++++|+..|+++++..| ..+..
T Consensus 567 ----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-----~~~~~ 637 (899)
T TIGR02917 567 ----IEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQP-----DSALA 637 (899)
T ss_pred ----hhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----CChHH
Confidence 124555555555566666666666555555555555555556666666666666666665555444 22344
Q ss_pred HHHHHHHHHHhcChhhhhHHh
Q 045024 641 VSFICRLLYHISGLDSTINSI 661 (1173)
Q Consensus 641 ~~~la~l~~~~g~~~~A~~~l 661 (1173)
+..++.++...|+.++|...+
T Consensus 638 ~~~l~~~~~~~~~~~~A~~~~ 658 (899)
T TIGR02917 638 LLLLADAYAVMKNYAKAITSL 658 (899)
T ss_pred HHHHHHHHHHcCCHHHHHHHH
Confidence 555555555555555555333
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-42 Score=381.27 Aligned_cols=455 Identities=19% Similarity=0.229 Sum_probs=276.5
Q ss_pred HHHHHHHHHHccCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 045024 25 HLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEH 104 (1173)
Q Consensus 25 ~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~ 104 (1173)
...++.-.++.|+ |.+|.++...+-..+|.+.+.+..++.++++ ..+++.....-..+++.+|...+++..+|.++..
T Consensus 51 ~l~lah~~yq~gd-~~~a~~h~nmv~~~d~t~~~~llll~ai~~q-~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~ke 128 (966)
T KOG4626|consen 51 RLELAHRLYQGGD-YKQAEKHCNMVGQEDPTNTERLLLLSAIFFQ-GSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKE 128 (966)
T ss_pred HHHHHHHHHhccC-HHHHHHHHhHhhccCCCcccceeeehhhhhc-ccchhhhhhhhhhhhhccchHHHHHHHHHHHHHH
Confidence 4444444444443 5555555555555555555555555555555 5555555555555555555555555555555555
Q ss_pred CCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 045024 105 GGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYG 184 (1173)
Q Consensus 105 ~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 184 (1173)
.|++++|+..|+.++++.|+..++|.++|.++...|+.+.|..+|..+++++|+...+...+|.++...|+.++|..+|.
T Consensus 129 rg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cYl 208 (966)
T KOG4626|consen 129 RGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACYL 208 (966)
T ss_pred hchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHHHH
Confidence 55555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHH
Q 045024 185 RAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLASGLLGLAKQCINLGAFRWGASLLEDACKV 264 (1173)
Q Consensus 185 ~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~l~~~~~a~g~~~~A~~~l~~Al~~ 264 (1173)
++++..|....+|.++|-++..+|+...|+..|+++++++|...++++++|.+|...+.
T Consensus 209 kAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~--------------------- 267 (966)
T KOG4626|consen 209 KAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARI--------------------- 267 (966)
T ss_pred HHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhc---------------------
Confidence 55555555555555555555555555555555555555555555555555555544333
Q ss_pred HHHHhhhcCChHHHHHHhchHHHHHhhccchhhhhhchhhhhhhhhhhhHhhHhhhhHHHHHHHHHHHHHHhcCCCCHHH
Q 045024 265 AEANTRLAGNMSCIWKLHGDIQLTYAKCFPWAEERQSLEFDVETFSASIVSWKTTCLMAAISSKSSYQRALYLAPWQANI 344 (1173)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~ 344 (1173)
++.|+.+|.+++.+.|+++.+
T Consensus 268 -----------------------------------------------------------~d~Avs~Y~rAl~lrpn~A~a 288 (966)
T KOG4626|consen 268 -----------------------------------------------------------FDRAVSCYLRALNLRPNHAVA 288 (966)
T ss_pred -----------------------------------------------------------chHHHHHHHHHHhcCCcchhh
Confidence 123334444444444444444
Q ss_pred HHHHHHHHHHHhhHHHhhhhhhhhhHHHHHHHHHHHhhcCCCHHHHHHHHHhhcccHHHHHHHHHHHhcCCCcHHHHHHH
Q 045024 345 YTDIAITSDLIYSLNEAYGHYQSAWHVSEKMALGALLLEGDNCQFWVTLGCLSNYNGLKQHALIRGLQLDVSLADAWAHI 424 (1173)
Q Consensus 345 ~~~la~~~~~~g~~~eA~~~~~~~~~~A~k~~~~al~~~p~~~~~~~~Lg~~~~~~~~a~~a~~kal~l~p~~~~a~~~L 424 (1173)
+-+++.+|..+|..+ .|+.+|+++++++|+.++++.+|
T Consensus 289 ~gNla~iYyeqG~ld------------------------------------------lAI~~Ykral~~~P~F~~Ay~Nl 326 (966)
T KOG4626|consen 289 HGNLACIYYEQGLLD------------------------------------------LAIDTYKRALELQPNFPDAYNNL 326 (966)
T ss_pred ccceEEEEeccccHH------------------------------------------HHHHHHHHHHhcCCCchHHHhHH
Confidence 444444444433333 34445555555555555555555
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCChhHHHHhHHHHHHhcCCHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHhCCCC
Q 045024 425 GKLYGEVGEKKLARQAFDSARSIDPSLALPWAGMSADVQASESLVDDAFESCLRAVQILPL-AEFQIGLAKLAKLSGHLS 503 (1173)
Q Consensus 425 g~~y~~~g~~e~A~~~f~~al~~~P~~~~a~~~l~a~~~~~~g~~~eA~~~~~~al~~~p~-~~~~~~la~l~~~~g~~~ 503 (1173)
|..+...|+..+|..+|.+++.+.|+++++..+ ++.++...|..++|..+|.++++..|. ....-.++.++..+|++
T Consensus 327 anALkd~G~V~ea~~cYnkaL~l~p~hadam~N-Lgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl- 404 (966)
T KOG4626|consen 327 ANALKDKGSVTEAVDCYNKALRLCPNHADAMNN-LGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNL- 404 (966)
T ss_pred HHHHHhccchHHHHHHHHHHHHhCCccHHHHHH-HHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccH-
Confidence 555555555555555555555555555555555 444555555555555555555555553 23344444444444442
Q ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHHHhcCCHHH
Q 045024 504 SSQVFGAIQQAIQRGPHYPESHNLYGLVCEARSDYQAAVVSYRLARYAISSSSGTVPNSHFQDISINLARSLSRAGNALD 583 (1173)
Q Consensus 504 ~~~A~~~l~~al~~~P~~~~a~~~lg~i~~~~g~~~~A~~~~~kAl~l~~~~pe~~~~~~~~~~~~~La~~~~~~g~~~e 583 (1173)
++|+..|+.++.+.|....++.++|..|..+|+.+.|+..|++|+.. +|.+++++.+||.+|...|+..+
T Consensus 405 -~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~---------nPt~AeAhsNLasi~kDsGni~~ 474 (966)
T KOG4626|consen 405 -DDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQI---------NPTFAEAHSNLASIYKDSGNIPE 474 (966)
T ss_pred -HHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhc---------CcHHHHHHhhHHHHhhccCCcHH
Confidence 35555666666666788889999999999999999999999999654 67788899999999999999999
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCh
Q 045024 584 AVRECESLERQGMLDAEVLQVYAFSLWQLGKY 615 (1173)
Q Consensus 584 Ai~~~~~~~~~~p~~~~~~~~la~a~~~~g~~ 615 (1173)
||..|+.+++..|+.++++.+++.++.-.-++
T Consensus 475 AI~sY~~aLklkPDfpdA~cNllh~lq~vcdw 506 (966)
T KOG4626|consen 475 AIQSYRTALKLKPDFPDAYCNLLHCLQIVCDW 506 (966)
T ss_pred HHHHHHHHHccCCCCchhhhHHHHHHHHHhcc
Confidence 99999999999999999998888776655444
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-41 Score=373.57 Aligned_cols=456 Identities=16% Similarity=0.164 Sum_probs=417.2
Q ss_pred CCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHH
Q 045024 54 PQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLG 133 (1173)
Q Consensus 54 p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la 133 (1173)
+........++.-.++ .|+|.+|++....+-..+|.+.+....++.++++..+++.....-..+++.+|.-.+++.++|
T Consensus 45 ~~~~~~~l~lah~~yq-~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~a 123 (966)
T KOG4626|consen 45 HEGSDDRLELAHRLYQ-GGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLA 123 (966)
T ss_pred CccchhHHHHHHHHHh-ccCHHHHHHHHhHhhccCCCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHH
Confidence 3334557788888888 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHH
Q 045024 134 YLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKG 213 (1173)
Q Consensus 134 ~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A 213 (1173)
.++...|++++|+..|+.++++.|+..++|.++|.++...|+.+.|..+|..+++++|+...+...+|.++...|+..+|
T Consensus 124 N~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea 203 (966)
T KOG4626|consen 124 NILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEA 203 (966)
T ss_pred HHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHhhhcCChHHHHHHhchHHHHHhhcc
Q 045024 214 VEQFQLALKISSENVSAHYGLASGLLGLAKQCINLGAFRWGASLLEDACKVAEANTRLAGNMSCIWKLHGDIQLTYAKCF 293 (1173)
Q Consensus 214 ~~~~~~al~~~p~~~~a~~~la~~~~~l~~~~~a~g~~~~A~~~l~~Al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 293 (1173)
...|.++++..|....+|..+|-++...|+
T Consensus 204 ~~cYlkAi~~qp~fAiawsnLg~~f~~~Ge-------------------------------------------------- 233 (966)
T KOG4626|consen 204 KACYLKAIETQPCFAIAWSNLGCVFNAQGE-------------------------------------------------- 233 (966)
T ss_pred HHHHHHHHhhCCceeeeehhcchHHhhcch--------------------------------------------------
Confidence 999999999999888888888887777666
Q ss_pred chhhhhhchhhhhhhhhhhhHhhHhhhhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHhhhhhhhhhHHHH
Q 045024 294 PWAEERQSLEFDVETFSASIVSWKTTCLMAAISSKSSYQRALYLAPWQANIYTDIAITSDLIYSLNEAYGHYQSAWHVSE 373 (1173)
Q Consensus 294 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~A~ 373 (1173)
...|+..|+++++++|..+++|.++|.+|...+.++.|
T Consensus 234 ------------------------------i~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~A------------ 271 (966)
T KOG4626|consen 234 ------------------------------IWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRA------------ 271 (966)
T ss_pred ------------------------------HHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHH------------
Confidence 12577888999999999999999999999877777766
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHhhcccHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChh
Q 045024 374 KMALGALLLEGDNCQFWVTLGCLSNYNGLKQHALIRGLQLDVSLADAWAHIGKLYGEVGEKKLARQAFDSARSIDPSLAL 453 (1173)
Q Consensus 374 k~~~~al~~~p~~~~~~~~Lg~~~~~~~~a~~a~~kal~l~p~~~~a~~~Lg~~y~~~g~~e~A~~~f~~al~~~P~~~~ 453 (1173)
..+|.+++.+.|+.+.++-++|.+|..+|..+-|+..|+++++++|+.++
T Consensus 272 ------------------------------vs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~ 321 (966)
T KOG4626|consen 272 ------------------------------VSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPD 321 (966)
T ss_pred ------------------------------HHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchH
Confidence 45899999999999999999999999999999999999999999999999
Q ss_pred HHHHhHHHHHHhcCCHHHHHHHHHHHHhcCC-chHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 045024 454 PWAGMSADVQASESLVDDAFESCLRAVQILP-LAEFQIGLAKLAKLSGHLSSSQVFGAIQQAIQRGPHYPESHNLYGLVC 532 (1173)
Q Consensus 454 a~~~l~a~~~~~~g~~~eA~~~~~~al~~~p-~~~~~~~la~l~~~~g~~~~~~A~~~l~~al~~~P~~~~a~~~lg~i~ 532 (1173)
++.+ ++.++...|+..+|.++|.+++.+.| .++....++.++..+|.+ ++|...|.++++..|+...++.+||.+|
T Consensus 322 Ay~N-lanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~--e~A~~ly~~al~v~p~~aaa~nNLa~i~ 398 (966)
T KOG4626|consen 322 AYNN-LANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKI--EEATRLYLKALEVFPEFAAAHNNLASIY 398 (966)
T ss_pred HHhH-HHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccc--hHHHHHHHHHHhhChhhhhhhhhHHHHH
Confidence 9999 77799999999999999999999999 578999999999999985 5999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc
Q 045024 533 EARSDYQAAVVSYRLARYAISSSSGTVPNSHFQDISINLARSLSRAGNALDAVRECESLERQGMLDAEVLQVYAFSLWQL 612 (1173)
Q Consensus 533 ~~~g~~~~A~~~~~kAl~l~~~~pe~~~~~~~~~~~~~La~~~~~~g~~~eAi~~~~~~~~~~p~~~~~~~~la~a~~~~ 612 (1173)
.++|++++|+..|+.++++ .|.+++++.++|..|..+|+.+.|++.|.+++..+|.-.++..++|.+|-..
T Consensus 399 kqqgnl~~Ai~~YkealrI---------~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDs 469 (966)
T KOG4626|consen 399 KQQGNLDDAIMCYKEALRI---------KPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDS 469 (966)
T ss_pred HhcccHHHHHHHHHHHHhc---------CchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhcc
Confidence 9999999999999999766 6789999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHhhhccccccchhhhhHHHHHHHHH
Q 045024 613 GKYDLALSMARNLASSVSAMEQSSAAASVSFICRLLY 649 (1173)
Q Consensus 613 g~~~eA~~~~~~aL~~~p~~~~~~~~~~~~~la~l~~ 649 (1173)
|+..+|+..|+++|+..|+ .|++.+.++..+.
T Consensus 470 Gni~~AI~sY~~aLklkPD-----fpdA~cNllh~lq 501 (966)
T KOG4626|consen 470 GNIPEAIQSYRTALKLKPD-----FPDAYCNLLHCLQ 501 (966)
T ss_pred CCcHHHHHHHHHHHccCCC-----CchhhhHHHHHHH
Confidence 9999999999999999994 4566665555443
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=402.82 Aligned_cols=597 Identities=12% Similarity=0.040 Sum_probs=329.9
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCCCHHHH----------------HHHHHHHHHc
Q 045024 7 LLLQLEDSLEANPDDPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAF----------------RYLGHYYTRF 70 (1173)
Q Consensus 7 Ai~~l~~al~~~P~~~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~----------------~~lg~~~~~~ 70 (1173)
|.+.+.+++.++|+++.++..++.++...|+ +++|.+.++++++.+|+++.++ ..+|.++..
T Consensus 47 a~~~l~kl~~~~p~~p~~~~~~~~~~l~~g~-~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~- 124 (1157)
T PRK11447 47 VRQSLYRLELIDPNNPDVIAARFRLLLRQGD-SDGAQKLLDRLSQLAPDSNAYRSSRTTMLLSTPEGRQALQQARLLAT- 124 (1157)
T ss_pred HHHHHHHHHccCCCCHHHHHHHHHHHHhCCC-HHHHHHHHHHHHhhCCCChHHHHHHHHHHhcCCchhhHHHHHHHHHh-
Confidence 4555666666666666666666666655555 5666666666666666655432 334445555
Q ss_pred cCCHHHHHHHHHHHHhhCCCCHHH-HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 045024 71 SIDTQRAIKCYQRAVSLSPDDSVS-GEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSL 149 (1173)
Q Consensus 71 ~g~~~eA~~~~~~al~~~p~~~~a-~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l 149 (1173)
.|++++|+..|+++++.+|.+... ...+..+....|++++|+..++++++.+|+++.++..+|.++...|++++|+..+
T Consensus 125 ~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA~ll~~~g~~~eAl~~l 204 (1157)
T PRK11447 125 TGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRNTLALLLFSSGRRDEGFAVL 204 (1157)
T ss_pred CCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 566666666666666555555432 1122222223455666666666666666666666666666666666666666666
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh--------------------HHHHHHHHHHHHcCC
Q 045024 150 QHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSI--------------------FPLLESGNIFLMLGN 209 (1173)
Q Consensus 150 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~--------------------~a~~~la~~~~~~g~ 209 (1173)
++++...+....+-..........+....++..+...+...|+.. .....+|.++...|+
T Consensus 205 ~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~ 284 (1157)
T PRK11447 205 EQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQ 284 (1157)
T ss_pred HHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCC
Confidence 665543332211110000001111222222222222222222221 111245888899999
Q ss_pred hHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHhhhcCChHHHHHHhchHHHHH
Q 045024 210 FRKGVEQFQLALKISSENVSAHYGLASGLLGLAKQCINLGAFRWGASLLEDACKVAEANTRLAGNMSCIWKLHGDIQLTY 289 (1173)
Q Consensus 210 ~~~A~~~~~~al~~~p~~~~a~~~la~~~~~l~~~~~a~g~~~~A~~~l~~Al~~~~~~~~~~~~~~~~~~~~g~~~~~~ 289 (1173)
+++|+..|+++++.+|+++.++..+|.++...|+ +++|+..|+++++..+..... ..|..+....
T Consensus 285 ~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~-------~~eA~~~l~~Al~~~p~~~~~-----~~~~~ll~~~--- 349 (1157)
T PRK11447 285 GGKAIPELQQAVRANPKDSEALGALGQAYSQQGD-------RARAVAQFEKALALDPHSSNR-----DKWESLLKVN--- 349 (1157)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-------HHHHHHHHHHHHHhCCCccch-----hHHHHHHHhh---
Confidence 9999999999999999999888888887777655 667777676666544322110 0010000000
Q ss_pred hhccchhhhhhchhhhhhhhhhhhHhhHhhhhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHhhhhhhhhh
Q 045024 290 AKCFPWAEERQSLEFDVETFSASIVSWKTTCLMAAISSKSSYQRALYLAPWQANIYTDIAITSDLIYSLNEAYGHYQSAW 369 (1173)
Q Consensus 290 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~ 369 (1173)
. .+............+++++|+..|+++++.+|+++.++..+|.++...|++++|
T Consensus 350 -~----------------~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA-------- 404 (1157)
T PRK11447 350 -R----------------YWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAA-------- 404 (1157)
T ss_pred -h----------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHH--------
Confidence 0 000000111223345577899999999999999999999999999999988888
Q ss_pred HHHHHHHHHHHhhcCCCHHHHHHHHHhhc--ccHHHHHHHHHHHhcCC---------CcHHHHHHHHHHHHHcCCHHHHH
Q 045024 370 HVSEKMALGALLLEGDNCQFWVTLGCLSN--YNGLKQHALIRGLQLDV---------SLADAWAHIGKLYGEVGEKKLAR 438 (1173)
Q Consensus 370 ~~A~k~~~~al~~~p~~~~~~~~Lg~~~~--~~~~a~~a~~kal~l~p---------~~~~a~~~Lg~~y~~~g~~e~A~ 438 (1173)
++.+++++..+|++..++..++.++. ..+.+...+.+.....+ -....+..+|.++...|++++|+
T Consensus 405 ---~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~ 481 (1157)
T PRK11447 405 ---ERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAA 481 (1157)
T ss_pred ---HHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHH
Confidence 45577888888888887777776653 22223222222111100 01123444555555555555555
Q ss_pred HHHHHHHhhCCCChhHHHHhHHHHHHhcCCHHHHHHHHHHHHhcCC-chHHHHHHHHHHHHhCCCChHHHHHHHHHH---
Q 045024 439 QAFDSARSIDPSLALPWAGMSADVQASESLVDDAFESCLRAVQILP-LAEFQIGLAKLAKLSGHLSSSQVFGAIQQA--- 514 (1173)
Q Consensus 439 ~~f~~al~~~P~~~~a~~~l~a~~~~~~g~~~eA~~~~~~al~~~p-~~~~~~~la~l~~~~g~~~~~~A~~~l~~a--- 514 (1173)
..|+++++++|+++.+++. ++.++...|++++|+..|+++++..| .++..+.++.+....++ .++|+..++++
T Consensus 482 ~~~~~Al~~~P~~~~~~~~-LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~--~~~Al~~l~~l~~~ 558 (1157)
T PRK11447 482 ELQRQRLALDPGSVWLTYR-LAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDR--DRAALAHLNTLPRA 558 (1157)
T ss_pred HHHHHHHHhCCCCHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCC--HHHHHHHHHhCCch
Confidence 5555555555555555555 44455555555555555555555555 23334443333322222 22333333322
Q ss_pred -------------------------------------HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCC
Q 045024 515 -------------------------------------IQRGPHYPESHNLYGLVCEARSDYQAAVVSYRLARYAISSSSG 557 (1173)
Q Consensus 515 -------------------------------------l~~~P~~~~a~~~lg~i~~~~g~~~~A~~~~~kAl~l~~~~pe 557 (1173)
++..|.++..+..+|.++...|++++|+..|+++++. .|+
T Consensus 559 ~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~---~P~ 635 (1157)
T PRK11447 559 QWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTR---EPG 635 (1157)
T ss_pred hcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCC
Confidence 2245666666666666666666666666666666432 232
Q ss_pred CCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHhhhccccccc-h
Q 045024 558 TVPNSHFQDISINLARSLSRAGNALDAVRECESLERQGMLDAEVLQVYAFSLWQLGKYDLALSMARNLASSVSAMEQS-S 636 (1173)
Q Consensus 558 ~~~~~~~~~~~~~La~~~~~~g~~~eAi~~~~~~~~~~p~~~~~~~~la~a~~~~g~~~eA~~~~~~aL~~~p~~~~~-~ 636 (1173)
...++..++.+|...|++++|++.++++++..|+++..+..+|.++...|++++|++.|+++++..|..... .
T Consensus 636 ------~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~ 709 (1157)
T PRK11447 636 ------NADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSME 709 (1157)
T ss_pred ------CHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchh
Confidence 233666666666666666666666666666666666666666666666666666666666666644322111 1
Q ss_pred hhhhHHHHHHHHHHhcChhhhhHH
Q 045024 637 AAASVSFICRLLYHISGLDSTINS 660 (1173)
Q Consensus 637 ~~~~~~~la~l~~~~g~~~~A~~~ 660 (1173)
...++..++.++...|+.++|...
T Consensus 710 ~a~~~~~~a~~~~~~G~~~~A~~~ 733 (1157)
T PRK11447 710 SALVLRDAARFEAQTGQPQQALET 733 (1157)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHH
Confidence 123344456666666666666643
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-36 Score=393.67 Aligned_cols=658 Identities=12% Similarity=0.023 Sum_probs=420.7
Q ss_pred CCCHHHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHH---
Q 045024 19 PDDPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSG--- 95 (1173)
Q Consensus 19 P~~~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~--- 95 (1173)
++..+.++..+.+...+++ .+.|.+.+++++.++|+++.++..++.++.. .|+.++|.+.++++++++|+++.++
T Consensus 25 ~~~~~~Ll~q~~~~~~~~~-~d~a~~~l~kl~~~~p~~p~~~~~~~~~~l~-~g~~~~A~~~l~~l~~~~P~~~~~~~~~ 102 (1157)
T PRK11447 25 PTAQQQLLEQVRLGEATHR-EDLVRQSLYRLELIDPNNPDVIAARFRLLLR-QGDSDGAQKLLDRLSQLAPDSNAYRSSR 102 (1157)
T ss_pred CCHHHHHHHHHHHHHhhCC-hHHHHHHHHHHHccCCCCHHHHHHHHHHHHh-CCCHHHHHHHHHHHHhhCCCChHHHHHH
Confidence 3445667888888877776 8999999999999999999999999999999 9999999999999999999987753
Q ss_pred -------------HHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 045024 96 -------------EALCELLEHGGKESLEVVVCREASDKSPRAFWA-FRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPH 161 (1173)
Q Consensus 96 -------------~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a-~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~ 161 (1173)
+.+|.++...|++++|+..|+++++.+|.+... ......+....|++++|+..|+++++.+|+++.
T Consensus 103 ~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~ 182 (1157)
T PRK11447 103 TTMLLSTPEGRQALQQARLLATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTG 182 (1157)
T ss_pred HHHHhcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHH
Confidence 444556666677777777777776666655421 112222223346677777777777777777777
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHH
Q 045024 162 LWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLASGLLGL 241 (1173)
Q Consensus 162 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~l 241 (1173)
++..+|.++...|++++|+..++++++..+....+-..........+....++..+...+...|+......
T Consensus 183 ~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~--------- 253 (1157)
T PRK11447 183 LRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAA--------- 253 (1157)
T ss_pred HHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHH---------
Confidence 77777777777777777777777666543332211111111122234445555555555555555432210
Q ss_pred HHHHHHhhcHHHHHHHHHHHHHHHHHHhhhcCChHHHHHHhchHHHHHhhccchhhhhhchhhhhhhhhhhhHhhHhhhh
Q 045024 242 AKQCINLGAFRWGASLLEDACKVAEANTRLAGNMSCIWKLHGDIQLTYAKCFPWAEERQSLEFDVETFSASIVSWKTTCL 321 (1173)
Q Consensus 242 ~~~~~a~g~~~~A~~~l~~Al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 321 (1173)
+...+.+... ...+........ +......
T Consensus 254 ------------A~~~L~~~~~-------~~~dp~~~~~~~--------------------------------G~~~~~~ 282 (1157)
T PRK11447 254 ------------ARSQLAEQQK-------QLADPAFRARAQ--------------------------------GLAAVDS 282 (1157)
T ss_pred ------------HHHHHHHHHH-------hccCcchHHHHH--------------------------------HHHHHHC
Confidence 0000111000 000000000011 1122234
Q ss_pred HHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHhhhhhhhhhHHHHHHHHHHHhhcCCCHHH--H---------
Q 045024 322 MAAISSKSSYQRALYLAPWQANIYTDIAITSDLIYSLNEAYGHYQSAWHVSEKMALGALLLEGDNCQF--W--------- 390 (1173)
Q Consensus 322 ~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~A~k~~~~al~~~p~~~~~--~--------- 390 (1173)
+++++|+..|+++++.+|+++.++..+|.++...|++++| +..++++++.+|++... |
T Consensus 283 g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA-----------~~~l~~Al~~~p~~~~~~~~~~ll~~~~~ 351 (1157)
T PRK11447 283 GQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARA-----------VAQFEKALALDPHSSNRDKWESLLKVNRY 351 (1157)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH-----------HHHHHHHHHhCCCccchhHHHHHHHhhhH
Confidence 5577899999999999999999999999999999999998 45577888888876421 1
Q ss_pred ---HHHHHhhc---ccHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhHHHHhHHHHHH
Q 045024 391 ---VTLGCLSN---YNGLKQHALIRGLQLDVSLADAWAHIGKLYGEVGEKKLARQAFDSARSIDPSLALPWAGMSADVQA 464 (1173)
Q Consensus 391 ---~~Lg~~~~---~~~~a~~a~~kal~l~p~~~~a~~~Lg~~y~~~g~~e~A~~~f~~al~~~P~~~~a~~~l~a~~~~ 464 (1173)
..+|.++. +...|...|++++..+|+++.++..+|.+|...|++++|++.|+++++++|++..++.. ++.++
T Consensus 352 ~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~-L~~l~- 429 (1157)
T PRK11447 352 WLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRG-LANLY- 429 (1157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHH-HHHHH-
Confidence 12344443 56688899999999999999999999999999999999999999999999999988877 55465
Q ss_pred hcCCHHHHHHHHHHHHhcCCc----------hHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 045024 465 SESLVDDAFESCLRAVQILPL----------AEFQIGLAKLAKLSGHLSSSQVFGAIQQAIQRGPHYPESHNLYGLVCEA 534 (1173)
Q Consensus 465 ~~g~~~eA~~~~~~al~~~p~----------~~~~~~la~l~~~~g~~~~~~A~~~l~~al~~~P~~~~a~~~lg~i~~~ 534 (1173)
..+++++|+..+++.....+. ...+..++......|+ .++|+..++++++.+|+++.+++.+|.++..
T Consensus 430 ~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~--~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~ 507 (1157)
T PRK11447 430 RQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGK--WAQAAELQRQRLALDPGSVWLTYRLAQDLRQ 507 (1157)
T ss_pred HhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 345678887777654332211 1122334444445555 5688888888888888888888888888888
Q ss_pred cCCHHHHHHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC----------HHHHHH
Q 045024 535 RSDYQAAVVSYRLARYAISSSSGTVPNSHFQDISINLARSLSRAGNALDAVRECESLERQGMLD----------AEVLQV 604 (1173)
Q Consensus 535 ~g~~~~A~~~~~kAl~l~~~~pe~~~~~~~~~~~~~La~~~~~~g~~~eAi~~~~~~~~~~p~~----------~~~~~~ 604 (1173)
.|++++|+..|+++++ ..|+++ .+++.++..+...|++++|+..++++......+ ....+.
T Consensus 508 ~G~~~~A~~~l~~al~---~~P~~~------~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~ 578 (1157)
T PRK11447 508 AGQRSQADALMRRLAQ---QKPNDP------EQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLE 578 (1157)
T ss_pred cCCHHHHHHHHHHHHH---cCCCCH------HHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHH
Confidence 8888888888887753 333332 356666766677777777777776653221111 011234
Q ss_pred HHHHHHHcCChHHHHHHHHHHhhhccccccchhhhhHHHHHHHHHHhcChhhhh----HHhhhCCCCccccchhHHHHHH
Q 045024 605 YAFSLWQLGKYDLALSMARNLASSVSAMEQSSAAASVSFICRLLYHISGLDSTI----NSILKMPKGLFQCSKMSFIVSA 680 (1173)
Q Consensus 605 la~a~~~~g~~~eA~~~~~~aL~~~p~~~~~~~~~~~~~la~l~~~~g~~~~A~----~~l~~~p~~~~~~~~~~~~l~~ 680 (1173)
++.++...|++++|+..++ ..| .++.....++.++...|+.++|. +.++..|++. .....++.
T Consensus 579 ~a~~l~~~G~~~eA~~~l~----~~p-----~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~----~a~~~la~ 645 (1157)
T PRK11447 579 TANRLRDSGKEAEAEALLR----QQP-----PSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNA----DARLGLIE 645 (1157)
T ss_pred HHHHHHHCCCHHHHHHHHH----hCC-----CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHH
Confidence 5666666777777766655 123 23345566666677777776666 3333344433 33322322
Q ss_pred hhhccCccchHHHHhcccccccCCccchhhHHHHHHHHhhhCCCCCccccchhHHHHHHHHhcCCCcH------HHHHHH
Q 045024 681 IHALDHSNRLESVVSSSRNCIASPEEITGMHYLVALNKLVKNGPESCLGFNSGIFHLRKVLHVYPNCN------LIRNLL 754 (1173)
Q Consensus 681 l~~l~~~~~~~~a~~~~~~~~~~~~~~a~~~~l~a~~~~~~~~~~~~~~~~~Ai~~l~k~l~~~P~~~------~~~~~L 754 (1173)
+ +...++..+|...+.......+.....+..++......++. ++|+..+++++...|+++ .++..+
T Consensus 646 ~--~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~------~eA~~~~~~al~~~~~~~~~~~~a~~~~~~ 717 (1157)
T PRK11447 646 V--DIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDT------AAAQRTFNRLIPQAKSQPPSMESALVLRDA 717 (1157)
T ss_pred H--HHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCH------HHHHHHHHHHhhhCccCCcchhhHHHHHHH
Confidence 2 22234444444442222222222223444455555555555 899999999999887654 467778
Q ss_pred HHHhccCCcccchhh-hhhccc---cCCCcccc
Q 045024 755 GYLLLSSDEWRYSHV-ASRCCS---LETSDCIK 783 (1173)
Q Consensus 755 a~ll~~~~~~~~a~~-a~ra~~---l~~~~~~~ 783 (1173)
|.++...|++..+.. .+++.. +.|..|.+
T Consensus 718 a~~~~~~G~~~~A~~~y~~Al~~~~~~~~~p~~ 750 (1157)
T PRK11447 718 ARFEAQTGQPQQALETYKDAMVASGITPTRPQD 750 (1157)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhcCCCCCCCCC
Confidence 999999999876664 344432 55555554
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-36 Score=352.38 Aligned_cols=688 Identities=18% Similarity=0.169 Sum_probs=521.9
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q 045024 39 KEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREA 118 (1173)
Q Consensus 39 ~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~a 118 (1173)
.+.|...|-++++++|..+.++..+|.+|.. ..|...|.++|++|.+++|.+..+.-..+..|....+++.|....-.+
T Consensus 474 ~~~al~ali~alrld~~~apaf~~LG~iYrd-~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~ 552 (1238)
T KOG1127|consen 474 SALALHALIRALRLDVSLAPAFAFLGQIYRD-SDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRA 552 (1238)
T ss_pred HHHHHHHHHHHHhcccchhHHHHHHHHHHHH-HHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHH
Confidence 6899999999999999999999999999999 889999999999999999999999999999999999999999998888
Q ss_pred HhhCCCc--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHH
Q 045024 119 SDKSPRA--FWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFP 196 (1173)
Q Consensus 119 l~~~p~~--~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a 196 (1173)
-+..|-. ...|..+|..|...++...|+..|+.+++.+|.+...|..+|.+|...|++..|++.|.++..++|.+..+
T Consensus 553 ~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~ 632 (1238)
T KOG1127|consen 553 AQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYG 632 (1238)
T ss_pred hhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHH
Confidence 7777753 45677799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHhhhc-CCh
Q 045024 197 LLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLASGLLGLAKQCINLGAFRWGASLLEDACKVAEANTRLA-GNM 275 (1173)
Q Consensus 197 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~l~~~~~a~g~~~~A~~~l~~Al~~~~~~~~~~-~~~ 275 (1173)
.+..+.+...+|+|.+|+..+...+............++.++++........|-..++.+.++++++.+.....-. ...
T Consensus 633 ~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~ 712 (1238)
T KOG1127|consen 633 RFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSD 712 (1238)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhh
Confidence 9999999999999999999999999988888888999999999999999999999999999999999988766544 777
Q ss_pred HHHHHHhchHHHHHhhccchhhhhhchhhhhhhhhhhhHhhHhhhh-HHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 045024 276 SCIWKLHGDIQLTYAKCFPWAEERQSLEFDVETFSASIVSWKTTCL-MAAISSKSSYQRALYLAPWQANIYTDIAITSDL 354 (1173)
Q Consensus 276 ~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~ 354 (1173)
...|...|+.....-...+-.....-+..-...+... ..... .-.--+.+++-..+++.. ++..|+++|..|.+
T Consensus 713 ~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~----~~l~~~d~l~Lg~~c~~~hlsl~~-~~~~WyNLGinylr 787 (1238)
T KOG1127|consen 713 RLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKT----GALKKNDLLFLGYECGIAHLSLAI-HMYPWYNLGINYLR 787 (1238)
T ss_pred HHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhc----ccCcchhHHHHHHHHhhHHHHHhh-ccchHHHHhHHHHH
Confidence 8899999998876654331110000000000000000 00000 001123444444444433 26679999988875
Q ss_pred H-hhHHHhhhhhhhhhHHHHHHHHHHHhhcCCCHHHHHHHHHhhc--ccHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc
Q 045024 355 I-YSLNEAYGHYQSAWHVSEKMALGALLLEGDNCQFWVTLGCLSN--YNGLKQHALIRGLQLDVSLADAWAHIGKLYGEV 431 (1173)
Q Consensus 355 ~-g~~~eA~~~~~~~~~~A~k~~~~al~~~p~~~~~~~~Lg~~~~--~~~~a~~a~~kal~l~p~~~~a~~~Lg~~y~~~ 431 (1173)
. -...+.. .....|+..+++++++..++..+|+.||.+.. +...++++|.+.+..+|.+...|.++|.++.+.
T Consensus 788 ~f~~l~et~----~~~~~Ai~c~KkaV~L~ann~~~WnaLGVlsg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n 863 (1238)
T KOG1127|consen 788 YFLLLGETM----KDACTAIRCCKKAVSLCANNEGLWNALGVLSGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLEN 863 (1238)
T ss_pred HHHHcCCcc----hhHHHHHHHHHHHHHHhhccHHHHHHHHHhhccchhhhhhhhhhhhhhccccchhheeccceeEEec
Confidence 2 1111111 11256788899999999999999999999965 566899999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhhCCCChhHHHHhHHHHHHhcCCHHHHHHHHHHHHhcCC----chHHHHHHHHH--HHHhCCCC--
Q 045024 432 GEKKLARQAFDSARSIDPSLALPWAGMSADVQASESLVDDAFESCLRAVQILP----LAEFQIGLAKL--AKLSGHLS-- 503 (1173)
Q Consensus 432 g~~e~A~~~f~~al~~~P~~~~a~~~l~a~~~~~~g~~~eA~~~~~~al~~~p----~~~~~~~la~l--~~~~g~~~-- 503 (1173)
.+++.|...|.++..++|.+...|++ .+.+....|+.-++...|....++.. -+.+.+.+... ....|+..
T Consensus 864 ~d~E~A~~af~~~qSLdP~nl~~WlG-~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~ 942 (1238)
T KOG1127|consen 864 QDFEHAEPAFSSVQSLDPLNLVQWLG-EALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEES 942 (1238)
T ss_pred ccHHHhhHHHHhhhhcCchhhHHHHH-HHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHH
Confidence 99999999999999999999999999 45588899999999999998555422 23444444333 33333321
Q ss_pred ------hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHHHh
Q 045024 504 ------SSQVFGAIQQAIQRGPHYPESHNLYGLVCEARSDYQAAVVSYRLARYAISSSSGTVPNSHFQDISINLARSLSR 577 (1173)
Q Consensus 504 ------~~~A~~~l~~al~~~P~~~~a~~~lg~i~~~~g~~~~A~~~~~kAl~l~~~~pe~~~~~~~~~~~~~La~~~~~ 577 (1173)
...|--.+++.+..+|++..++...|...+..+.+.+|.+.+.+.+.+++..-+ ...+..+.-+.|++++.
T Consensus 943 I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d---~sqynvak~~~gRL~ls 1019 (1238)
T KOG1127|consen 943 INTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLD---ESQYNVAKPDAGRLELS 1019 (1238)
T ss_pred HHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh---hhhhhhhhhhhhhhhhh
Confidence 123555777888889999999999999999999999999999999988876432 22333477789999999
Q ss_pred cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHhhhccccccchhhhhHHHHHHHHH---HhcCh
Q 045024 578 AGNALDAVRECESLERQGMLDAEVLQVYAFSLWQLGKYDLALSMARNLASSVSAMEQSSAAASVSFICRLLY---HISGL 654 (1173)
Q Consensus 578 ~g~~~eAi~~~~~~~~~~p~~~~~~~~la~a~~~~g~~~eA~~~~~~aL~~~p~~~~~~~~~~~~~la~l~~---~~g~~ 654 (1173)
.|+|+.|...+...-... .+-........+-.|+++++.+.|++++.... .....+++++.+++ ..++.
T Consensus 1020 lgefe~A~~a~~~~~~ev---dEdi~gt~l~lFfkndf~~sl~~fe~aLsis~-----se~d~vvLl~kva~~~g~~~~k 1091 (1238)
T KOG1127|consen 1020 LGEFESAKKASWKEWMEV---DEDIRGTDLTLFFKNDFFSSLEFFEQALSISN-----SESDKVVLLCKVAVCMGLARQK 1091 (1238)
T ss_pred hcchhhHhhhhcccchhH---HHHHhhhhHHHHHHhHHHHHHHHHHHHhhhcc-----cccchhhhhHHHHHHHhhcccc
Confidence 999998876655432111 11122234445889999999999999998654 22244455555544 45566
Q ss_pred hhhhHHhhhCCCCccccchhHHHHHHhhhccCccchHHHHhc-ccccccCCc-cchhhHHHHHHHHhhhCCCCCccccch
Q 045024 655 DSTINSILKMPKGLFQCSKMSFIVSAIHALDHSNRLESVVSS-SRNCIASPE-EITGMHYLVALNKLVKNGPESCLGFNS 732 (1173)
Q Consensus 655 ~~A~~~l~~~p~~~~~~~~~~~~l~~l~~l~~~~~~~~a~~~-~~~~~~~~~-~~a~~~~l~a~~~~~~~~~~~~~~~~~ 732 (1173)
+.|...+-+.-..-.......+.+++++.++.+.....++.+ +........ .-... ++.-..+..+++. ..
T Consensus 1092 ~~A~~lLfe~~~ls~~~~~sll~L~A~~ild~da~~ssaileel~kl~k~e~~~~~~~-ll~e~i~~~~~r~------~~ 1164 (1238)
T KOG1127|consen 1092 NDAQFLLFEVKSLSKVQASSLLPLPAVYILDADAHGSSAILEELEKLLKLEWFCWPPG-LLKELIYALQGRS------VA 1164 (1238)
T ss_pred hHHHHHHHHHHHhCccchhhHHHHHHHHHHhhhhhhhHHHHHHHHHhhhhHHhccChh-HHHHHHHHHhhhh------HH
Confidence 666643333322222222566888999988777766666665 222211110 11112 2222222233333 57
Q ss_pred hHHHHHHHHhcCCCcHHHHHHHH
Q 045024 733 GIFHLRKVLHVYPNCNLIRNLLG 755 (1173)
Q Consensus 733 Ai~~l~k~l~~~P~~~~~~~~La 755 (1173)
..+.+++++|.+|+++.+|..|.
T Consensus 1165 vk~~~qr~~h~~P~~~~~WslL~ 1187 (1238)
T KOG1127|consen 1165 VKKQIQRAVHSNPGDPALWSLLS 1187 (1238)
T ss_pred HHHHHHHHHhcCCCChHHHHHHH
Confidence 88999999999999999999997
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-35 Score=340.17 Aligned_cols=584 Identities=18% Similarity=0.146 Sum_probs=483.6
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 045024 7 LLLQLEDSLEANPDDPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQN-AVAFRYLGHYYTRFSIDTQRAIKCYQRAV 85 (1173)
Q Consensus 7 Ai~~l~~al~~~P~~~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~-~~a~~~lg~~~~~~~g~~~eA~~~~~~al 85 (1173)
|...|..+++..|++..+++..|.+.+.+++ |..|+.+|.+++.++|.. ++....+|.++.+ .|+.+.|+..|++++
T Consensus 149 A~a~F~~Vl~~sp~Nil~LlGkA~i~ynkkd-Y~~al~yyk~al~inp~~~aD~rIgig~Cf~k-l~~~~~a~~a~~ral 226 (1018)
T KOG2002|consen 149 ADAQFHFVLKQSPDNILALLGKARIAYNKKD-YRGALKYYKKALRINPACKADVRIGIGHCFWK-LGMSEKALLAFERAL 226 (1018)
T ss_pred HHHHHHHHHhhCCcchHHHHHHHHHHhcccc-HHHHHHHHHHHHhcCcccCCCccchhhhHHHh-ccchhhHHHHHHHHH
Confidence 4889999999999999999999999999998 999999999999999975 5788899999999 999999999999999
Q ss_pred hhCCCCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---CC
Q 045024 86 SLSPDDSVSGEALCELLEHGGK---ESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYP---TS 159 (1173)
Q Consensus 86 ~~~p~~~~a~~~La~~~~~~g~---~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p---~~ 159 (1173)
+++|.+..++..||.+-....+ +..+...+.++...+|.+|.+...++..++..|+|+.+..+...++.... .-
T Consensus 227 qLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~ 306 (1018)
T KOG2002|consen 227 QLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIK 306 (1018)
T ss_pred hcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHH
Confidence 9999999999999998876654 78899999999999999999999999999999999999999999987653 33
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCHHHHHHHHHHH
Q 045024 160 PHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTS-IFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLASGL 238 (1173)
Q Consensus 160 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~ 238 (1173)
++.++.+|..|..+|+|++|..+|.++++.+|++ .-.++.+|++|...|+++.|+.+|+++++..|++......+|.+|
T Consensus 307 aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Ly 386 (1018)
T KOG2002|consen 307 AESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLY 386 (1018)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHH
Confidence 5679999999999999999999999999999998 888999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHHHHHHHHHhhhcCChHHHHHHhchHHHHHhhccchhhhhhchhhhhhhhhhhhHhhHh
Q 045024 239 LGLAKQCINLGAFRWGASLLEDACKVAEANTRLAGNMSCIWKLHGDIQLTYAKCFPWAEERQSLEFDVETFSASIVSWKT 318 (1173)
Q Consensus 239 ~~l~~~~~a~g~~~~A~~~l~~Al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 318 (1173)
...+. .....++|.....+.....+.....|..++.++..... .
T Consensus 387 a~~~~----------~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~--------------------------~ 430 (1018)
T KOG2002|consen 387 AHSAK----------KQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDP--------------------------W 430 (1018)
T ss_pred Hhhhh----------hhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcCh--------------------------H
Confidence 87652 22224556666666666667777788877776643221 1
Q ss_pred hhhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHhhhhhhhhhHHHHHHHHHHHhhcCC-----CHHHHHHH
Q 045024 319 TCLMAAISSKSSYQRALYLAPWQANIYTDIAITSDLIYSLNEAYGHYQSAWHVSEKMALGALLLEGD-----NCQFWVTL 393 (1173)
Q Consensus 319 ~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~A~k~~~~al~~~p~-----~~~~~~~L 393 (1173)
..+..+..|+..+...-.. -.++..+++|..++..|.+.+|...+.++...+.. ..+++ +....+++
T Consensus 431 ~sL~~~~~A~d~L~~~~~~--ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~------~~n~de~~~~~lt~~YNl 502 (1018)
T KOG2002|consen 431 ASLDAYGNALDILESKGKQ--IPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLE------VANKDEGKSTNLTLKYNL 502 (1018)
T ss_pred HHHHHHHHHHHHHHHcCCC--CCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhh------hcCccccccchhHHHHHH
Confidence 1123344555555554443 45889999999999999999997665544332111 11222 24457778
Q ss_pred HHhhc---ccHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhHHHHhHHHHHHhcCCHH
Q 045024 394 GCLSN---YNGLKQHALIRGLQLDVSLADAWAHIGKLYGEVGEKKLARQAFDSARSIDPSLALPWAGMSADVQASESLVD 470 (1173)
Q Consensus 394 g~~~~---~~~~a~~a~~kal~l~p~~~~a~~~Lg~~y~~~g~~e~A~~~f~~al~~~P~~~~a~~~l~a~~~~~~g~~~ 470 (1173)
+.+.. +...|.+.|...+...|...+++..+|.+....++..+|...+..++..+..++.+|.. .|..+....++.
T Consensus 503 arl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl-~G~~~l~k~~~~ 581 (1018)
T KOG2002|consen 503 ARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSL-LGNLHLKKSEWK 581 (1018)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHH-HHHHHHhhhhhc
Confidence 87766 45678889999999999999999999999999999999999999999999999999988 777888888899
Q ss_pred HHHHHHHHHHhc---CCchHHHHHHHHHHHHhCC----------CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 045024 471 DAFESCLRAVQI---LPLAEFQIGLAKLAKLSGH----------LSSSQVFGAIQQAIQRGPHYPESHNLYGLVCEARSD 537 (1173)
Q Consensus 471 eA~~~~~~al~~---~p~~~~~~~la~l~~~~g~----------~~~~~A~~~l~~al~~~P~~~~a~~~lg~i~~~~g~ 537 (1173)
.|.+-|+..+.. .+++-..++++.+....-. ...++|+..|.+++..+|.+..+-+.+|.++...|+
T Consensus 582 ~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~ 661 (1018)
T KOG2002|consen 582 PAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGR 661 (1018)
T ss_pred ccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccC
Confidence 998877776664 3455566677775544321 114689999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHcCCh
Q 045024 538 YQAAVVSYRLARYAISSSSGTVPNSHFQDISINLARSLSRAGNALDAVRECESLERQGM--LDAEVLQVYAFSLWQLGKY 615 (1173)
Q Consensus 538 ~~~A~~~~~kAl~l~~~~pe~~~~~~~~~~~~~La~~~~~~g~~~eAi~~~~~~~~~~p--~~~~~~~~la~a~~~~g~~ 615 (1173)
+.+|+.+|.++.+.... +.++|.|+|.+|..+|+|..|++.|+.+++..- +++.++..||.+++..|++
T Consensus 662 ~~~A~dIFsqVrEa~~~---------~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~ 732 (1018)
T KOG2002|consen 662 FSEARDIFSQVREATSD---------FEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKL 732 (1018)
T ss_pred chHHHHHHHHHHHHHhh---------CCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhH
Confidence 99999999999765442 223899999999999999999999999987633 4577899999999999999
Q ss_pred HHHHHHHHHHhhhccccccchhhhhHHHHHHHHHHh
Q 045024 616 DLALSMARNLASSVSAMEQSSAAASVSFICRLLYHI 651 (1173)
Q Consensus 616 ~eA~~~~~~aL~~~p~~~~~~~~~~~~~la~l~~~~ 651 (1173)
.+|.+....++...| ..+.+...+|-++...
T Consensus 733 ~eak~~ll~a~~~~p-----~~~~v~FN~a~v~kkl 763 (1018)
T KOG2002|consen 733 QEAKEALLKARHLAP-----SNTSVKFNLALVLKKL 763 (1018)
T ss_pred HHHHHHHHHHHHhCC-----ccchHHhHHHHHHHHH
Confidence 999999999999888 4556666666665544
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-34 Score=334.01 Aligned_cols=612 Identities=14% Similarity=0.109 Sum_probs=484.7
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCc-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHH
Q 045024 4 KGALLLQLEDSLEANPDDPSLHLDLGLHLWENSES-KEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQ 82 (1173)
Q Consensus 4 ~~aAi~~l~~al~~~P~~~~~~~~lg~~~~~~~~~-~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~ 82 (1173)
...|.-.|..+-+++-.....++..+..++..+.. ++.|...|..+++..|++..+++..|.+.+. .|+|..|+.+|+
T Consensus 110 ~~~at~~~~~A~ki~m~~~~~l~~~~~~~l~~~~~~~~~A~a~F~~Vl~~sp~Nil~LlGkA~i~yn-kkdY~~al~yyk 188 (1018)
T KOG2002|consen 110 FDKATLLFDLADKIDMYEDSHLLVQRGFLLLEGDKSMDDADAQFHFVLKQSPDNILALLGKARIAYN-KKDYRGALKYYK 188 (1018)
T ss_pred HHHHHHHhhHHHHhhccCcchhhhhhhhhhhcCCccHHHHHHHHHHHHhhCCcchHHHHHHHHHHhc-cccHHHHHHHHH
Confidence 34467777777777776666666666666666652 5899999999999999999999999999999 999999999999
Q ss_pred HHHhhCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCC
Q 045024 83 RAVSLSPDD-SVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHK---KWSEAVQSLQHAIRGYPT 158 (1173)
Q Consensus 83 ~al~~~p~~-~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g---~~~~A~~~l~~al~~~p~ 158 (1173)
+++.++|.. ++....+|.++.++|+.+.|+..|.++++++|.+..++..||.+-.... .+..++..+.++...+|.
T Consensus 189 ~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~ 268 (1018)
T KOG2002|consen 189 KALRINPACKADVRIGIGHCFWKLGMSEKALLAFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNE 268 (1018)
T ss_pred HHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCC
Confidence 999999875 4568899999999999999999999999999999999999998877655 467899999999999999
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---ChHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCC-HHHHHHH
Q 045024 159 SPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDT---SIFPLLESGNIFLMLGNFRKGVEQFQLALKISSEN-VSAHYGL 234 (1173)
Q Consensus 159 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~a~~~l 234 (1173)
+|.+...++..++..|+|..+......++..... -.+.++.+|.+|+.+|++++|..+|.++++.+|++ ...++++
T Consensus 269 nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~Gl 348 (1018)
T KOG2002|consen 269 NPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGL 348 (1018)
T ss_pred CcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccch
Confidence 9999999999999999999999999999886543 35679999999999999999999999999999998 6678888
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHhhhcCChHHHHHHhchHHHHHhhccchhhhhhchhhhhhhhhhhhH
Q 045024 235 ASGLLGLAKQCINLGAFRWGASLLEDACKVAEANTRLAGNMSCIWKLHGDIQLTYAKCFPWAEERQSLEFDVETFSASIV 314 (1173)
Q Consensus 235 a~~~~~l~~~~~a~g~~~~A~~~l~~Al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 314 (1173)
|+.++..|+ ++.+...+.+.....|+.......+|-.+...+.
T Consensus 349 gQm~i~~~d--------------le~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~----------------------- 391 (1018)
T KOG2002|consen 349 GQMYIKRGD--------------LEESKFCFEKVLKQLPNNYETMKILGCLYAHSAK----------------------- 391 (1018)
T ss_pred hHHHHHhch--------------HHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhh-----------------------
Confidence 888888777 5555566666666667766777777766654421
Q ss_pred hhHhhhhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHhhhhhhhhhHHHHHHHHHHHhhcCCCHHHHHHHH
Q 045024 315 SWKTTCLMAAISSKSSYQRALYLAPWQANIYTDIAITSDLIYSLNEAYGHYQSAWHVSEKMALGALLLEGDNCQFWVTLG 394 (1173)
Q Consensus 315 ~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~A~k~~~~al~~~p~~~~~~~~Lg 394 (1173)
+....+.|.....++++..|.+.++|..++.++.....+.. ...+.. |...+.. ...+--++.++++|
T Consensus 392 -----~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~s-L~~~~~----A~d~L~~--~~~~ip~E~LNNva 459 (1018)
T KOG2002|consen 392 -----KQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWAS-LDAYGN----ALDILES--KGKQIPPEVLNNVA 459 (1018)
T ss_pred -----hhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChHHH-HHHHHH----HHHHHHH--cCCCCCHHHHHhHH
Confidence 11234678999999999999999999999999875544332 332222 2222221 12234578889999
Q ss_pred Hhhc---ccHHHHHHHHHHHhc-----CCC-----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhHHHHhHHH
Q 045024 395 CLSN---YNGLKQHALIRGLQL-----DVS-----LADAWAHIGKLYGEVGEKKLARQAFDSARSIDPSLALPWAGMSAD 461 (1173)
Q Consensus 395 ~~~~---~~~~a~~a~~kal~l-----~p~-----~~~a~~~Lg~~y~~~g~~e~A~~~f~~al~~~P~~~~a~~~l~a~ 461 (1173)
..++ +.+.|.+.|..++.. +++ +...-+++|.++...++++.|.+.|..+++..|.+.++++.++ .
T Consensus 460 slhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~-~ 538 (1018)
T KOG2002|consen 460 SLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLG-C 538 (1018)
T ss_pred HHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhh-H
Confidence 8887 666788888888855 222 2345899999999999999999999999999999999999954 3
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCC-chHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHH----
Q 045024 462 VQASESLVDDAFESCLRAVQILP-LAEFQIGLAKLAKLSGHLSSSQVFGAIQQAIQRG--PHYPESHNLYGLVCEA---- 534 (1173)
Q Consensus 462 ~~~~~g~~~eA~~~~~~al~~~p-~~~~~~~la~l~~~~g~~~~~~A~~~l~~al~~~--P~~~~a~~~lg~i~~~---- 534 (1173)
.....+...+|...+..++..+. +++.+..++.++.....+. .|..-++..++.- -+|+.++..||+++.+
T Consensus 539 ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~--~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~ 616 (1018)
T KOG2002|consen 539 MARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWK--PAKKKFETILKKTSTKTDAYSLIALGNVYIQALHN 616 (1018)
T ss_pred HHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhc--ccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcc
Confidence 55578899999999999999865 5666666776666555433 3445455554431 1578888899998764
Q ss_pred --------cCCHHHHHHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 045024 535 --------RSDYQAAVVSYRLARYAISSSSGTVPNSHFQDISINLARSLSRAGNALDAVRECESLERQGMLDAEVLQVYA 606 (1173)
Q Consensus 535 --------~g~~~~A~~~~~kAl~l~~~~pe~~~~~~~~~~~~~La~~~~~~g~~~eAi~~~~~~~~~~p~~~~~~~~la 606 (1173)
.+.+++|++.|.+++ ..+ |.+.-+-+.+|.++...|++.+|+.+|.++.+...+..++|+++|
T Consensus 617 ~~rn~ek~kk~~~KAlq~y~kvL---~~d------pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNla 687 (1018)
T KOG2002|consen 617 PSRNPEKEKKHQEKALQLYGKVL---RND------PKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLA 687 (1018)
T ss_pred cccChHHHHHHHHHHHHHHHHHH---hcC------cchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHH
Confidence 345666777777664 333 334448889999999999999999999999988888899999999
Q ss_pred HHHHHcCChHHHHHHHHHHhhhccccccchhhhhHHHHHHHHHHhcChhhhhHHhhhCCCCccccchhHHHHHH
Q 045024 607 FSLWQLGKYDLALSMARNLASSVSAMEQSSAAASVSFICRLLYHISGLDSTINSILKMPKGLFQCSKMSFIVSA 680 (1173)
Q Consensus 607 ~a~~~~g~~~eA~~~~~~aL~~~p~~~~~~~~~~~~~la~l~~~~g~~~~A~~~l~~~p~~~~~~~~~~~~l~~ 680 (1173)
.+|...|+|..|++.|+..++.+- ...++.++.+||+++|..|+..++.+.+.+.....+.++.+.|-++.
T Consensus 688 h~~~e~~qy~~AIqmYe~~lkkf~---~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~ 758 (1018)
T KOG2002|consen 688 HCYVEQGQYRLAIQMYENCLKKFY---KKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLAL 758 (1018)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc---ccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHH
Confidence 999999999999999999999443 45567899999999999999999995554443333333355555443
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-33 Score=348.66 Aligned_cols=634 Identities=13% Similarity=0.009 Sum_probs=416.3
Q ss_pred HHHHHHHHHHHccCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 045024 24 LHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLE 103 (1173)
Q Consensus 24 ~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~ 103 (1173)
.++..|..+...|+ +++|+..|+++++.+|+++.+++.++.+|.. .|++++|+..++++++.+|++...+..++.+
T Consensus 46 ~~f~~a~~~~~~Gd-~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~-~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i-- 121 (987)
T PRK09782 46 PRLDKALKAQKNND-EATAIREFEYIHQQVPDNIPLTLYLAEAYRH-FGHDDRARLLLEDQLKRHPGDARLERSLAAI-- 121 (987)
T ss_pred HHHHHHHHHHhCCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-CCCHHHHHHHHHHHHhcCcccHHHHHHHHHh--
Confidence 34455555555555 6777777777777777777777777777777 7777777777777777777666666666555
Q ss_pred HCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHH--------HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 045024 104 HGGKESLEVVVCREASDKSPRAFWAFRRLGYL--------QLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGM 175 (1173)
Q Consensus 104 ~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~--------~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~ 175 (1173)
+++++|+..|+++++.+|++..++..++.. |.+.++..+++. .+.+..+|........++.+|..+|+
T Consensus 122 --~~~~kA~~~ye~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~--lr~~~~~~~~~vL~L~~~rlY~~l~d 197 (987)
T PRK09782 122 --PVEVKSVTTVEELLAQQKACDAVPTLRCRSEVGQNALRLAQLPVARAQLN--DATFAASPEGKTLRTDLLQRAIYLKQ 197 (987)
T ss_pred --ccChhHHHHHHHHHHhCCCChhHHHHHHHHhhccchhhhhhHHHHHHHHH--HhhhCCCCCcHHHHHHHHHHHHHHhC
Confidence 666677777777777777777776666666 555444444444 33333333344455555677777777
Q ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHH-cCChHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhhcHHHH
Q 045024 176 FSAAIKSYGRAIELDDTSIFPLLESGNIFLM-LGNFRKGVEQFQLALKISSENVSAHYGLASGLLGLAKQCINLGAFRWG 254 (1173)
Q Consensus 176 ~~~A~~~~~~al~~~p~~~~a~~~la~~~~~-~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~l~~~~~a~g~~~~A 254 (1173)
+++|+..+.++++..|.+......++.+|.. +++ +++...++..++ +++.++..++..+...|+ .++|
T Consensus 198 w~~Ai~lL~~L~k~~pl~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk---~d~~l~~ala~~yi~~G~-------~~~A 266 (987)
T PRK09782 198 WSQADTLYNEARQQNTLSAAERRQWFDVLLAGQLD-DRLLALQSQGIF---TDPQSRITYATALAYRGE-------KARL 266 (987)
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhCH-HHHHHHhchhcc---cCHHHHHHHHHHHHHCCC-------HHHH
Confidence 7777777777777777666666667666666 355 666666543222 455555555555555544 3333
Q ss_pred HHHHHHHHHHHHHHhhhcCCh------------------------------------HHHHHHhchHHHHHhhccchhhh
Q 045024 255 ASLLEDACKVAEANTRLAGNM------------------------------------SCIWKLHGDIQLTYAKCFPWAEE 298 (1173)
Q Consensus 255 ~~~l~~Al~~~~~~~~~~~~~------------------------------------~~~~~~~g~~~~~~~~~~~~~~~ 298 (1173)
...+.+--.. ....+.. ...+...++..... ++
T Consensus 267 ~~~L~~~~~~----~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~------ 335 (987)
T PRK09782 267 QHYLIENKPL----FTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQ-KL------ 335 (987)
T ss_pred HHHHHhCccc----ccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHH-HH------
Confidence 2222221111 0000111 11111111111000 00
Q ss_pred hhchhhhhhhhhhhhHhhHhhhhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHhhhhhhhhhHHHHHHHHH
Q 045024 299 RQSLEFDVETFSASIVSWKTTCLMAAISSKSSYQRALYLAPWQANIYTDIAITSDLIYSLNEAYGHYQSAWHVSEKMALG 378 (1173)
Q Consensus 299 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~A~k~~~~ 378 (1173)
........................++........+..|.+......++......|+.++|...+..
T Consensus 336 ---~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~----------- 401 (987)
T PRK09782 336 ---LATLPANEMLEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQ----------- 401 (987)
T ss_pred ---hcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHH-----------
Confidence 000000000000000111123455677777778888899999999999999999999888555443
Q ss_pred HHhhcCCC---HHHHHHHHHhhc----------------------------cc---HHHHHHHHHHHhcCCC--cHHHHH
Q 045024 379 ALLLEGDN---CQFWVTLGCLSN----------------------------YN---GLKQHALIRGLQLDVS--LADAWA 422 (1173)
Q Consensus 379 al~~~p~~---~~~~~~Lg~~~~----------------------------~~---~~a~~a~~kal~l~p~--~~~a~~ 422 (1173)
+....++. ......++.++. .. ..+...+.+++..+|. ++.+|.
T Consensus 402 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~ 481 (987)
T PRK09782 402 RYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWN 481 (987)
T ss_pred hcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHH
Confidence 33321111 111212222222 01 1233456777788888 999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCChhHHHHhHHHHHHhcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCC
Q 045024 423 HIGKLYGEVGEKKLARQAFDSARSIDPSLALPWAGMSADVQASESLVDDAFESCLRAVQILPLAEFQIGLAKLAKLSGHL 502 (1173)
Q Consensus 423 ~Lg~~y~~~g~~e~A~~~f~~al~~~P~~~~a~~~l~a~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~la~l~~~~g~~ 502 (1173)
.+|.++.. +++++|+..|.+++...|++. ..+. .+.++...|++++|+..|+++....|.+...+.++.+....|+
T Consensus 482 ~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~-~~L~-lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd- 557 (987)
T PRK09782 482 RLAKCYRD-TLPGVALYAWLQAEQRQPDAW-QHRA-VAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGN- 557 (987)
T ss_pred HHHHHHHh-CCcHHHHHHHHHHHHhCCchH-HHHH-HHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCC-
Confidence 99999998 899999999999999999864 3444 4556678999999999999998887777777777777777776
Q ss_pred ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHHHhcCCHH
Q 045024 503 SSSQVFGAIQQAIQRGPHYPESHNLYGLVCEARSDYQAAVVSYRLARYAISSSSGTVPNSHFQDISINLARSLSRAGNAL 582 (1173)
Q Consensus 503 ~~~~A~~~l~~al~~~P~~~~a~~~lg~i~~~~g~~~~A~~~~~kAl~l~~~~pe~~~~~~~~~~~~~La~~~~~~g~~~ 582 (1173)
.++|...++++++.+|+....+..++......|++++|+..|++++.+ .| . ..++.++|.++.+.|+++
T Consensus 558 -~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l---~P------~-~~a~~~LA~~l~~lG~~d 626 (987)
T PRK09782 558 -GAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNI---AP------S-ANAYVARATIYRQRHNVP 626 (987)
T ss_pred -HHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh---CC------C-HHHHHHHHHHHHHCCCHH
Confidence 568999999999999999888887777778889999999999999644 33 2 458999999999999999
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHhhhccccccchhhhhHHHHHHHHHHhcChhhhhHHhh
Q 045024 583 DAVRECESLERQGMLDAEVLQVYAFSLWQLGKYDLALSMARNLASSVSAMEQSSAAASVSFICRLLYHISGLDSTINSIL 662 (1173)
Q Consensus 583 eAi~~~~~~~~~~p~~~~~~~~la~a~~~~g~~~eA~~~~~~aL~~~p~~~~~~~~~~~~~la~l~~~~g~~~~A~~~l~ 662 (1173)
+|+..|+++++.+|+++.++..+|.++...|++++|++.|+++++..| ..+.++..+|.++...|+.++|...++
T Consensus 627 eA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P-----~~~~a~~nLA~al~~lGd~~eA~~~l~ 701 (987)
T PRK09782 627 AAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLP-----DDPALIRQLAYVNQRLDDMAATQHYAR 701 (987)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-----CCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999888 556889999999999999999985333
Q ss_pred hCCCCccccchhHHHHHHhhhccCccchHHHHhcccccccCCccchhhHHHHHHHHhhhCCCCCccccchhHHHHHHHHh
Q 045024 663 KMPKGLFQCSKMSFIVSAIHALDHSNRLESVVSSSRNCIASPEEITGMHYLVALNKLVKNGPESCLGFNSGIFHLRKVLH 742 (1173)
Q Consensus 663 ~~p~~~~~~~~~~~~l~~l~~l~~~~~~~~a~~~~~~~~~~~~~~a~~~~l~a~~~~~~~~~~~~~~~~~Ai~~l~k~l~ 742 (1173)
+.-.... ..+.+..-.+....... .++.+.+.+.+...
T Consensus 702 ~Al~l~P------------------------------------~~a~i~~~~g~~~~~~~------~~~~a~~~~~r~~~ 739 (987)
T PRK09782 702 LVIDDID------------------------------------NQALITPLTPEQNQQRF------NFRRLHEEVGRRWT 739 (987)
T ss_pred HHHhcCC------------------------------------CCchhhhhhhHHHHHHH------HHHHHHHHHHHHhh
Confidence 2211110 01111111221112122 23788888999999
Q ss_pred cCCCcHHHHHHHHHHhccCCcc
Q 045024 743 VYPNCNLIRNLLGYLLLSSDEW 764 (1173)
Q Consensus 743 ~~P~~~~~~~~La~ll~~~~~~ 764 (1173)
.+|+.. +-...|.+++..++.
T Consensus 740 ~~~~~~-a~~~~g~~~~~~~~~ 760 (987)
T PRK09782 740 FSFDSS-IGLRSGAMSTANNNV 760 (987)
T ss_pred cCccch-hccccchHhhhcccc
Confidence 999888 777777777766664
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-32 Score=340.11 Aligned_cols=613 Identities=12% Similarity=-0.009 Sum_probs=450.6
Q ss_pred ChHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHH
Q 045024 2 DEKGALLLQLEDSLEANPDDPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCY 81 (1173)
Q Consensus 2 d~~~aAi~~l~~al~~~P~~~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~ 81 (1173)
|+. .|+..|+++++.+|+++.+++.++.+|...|+ +++|+..++++++.+|++...+..++.+ +++++|+..|
T Consensus 59 d~~-~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~-~~~A~~~~~kAv~ldP~n~~~~~~La~i-----~~~~kA~~~y 131 (987)
T PRK09782 59 DEA-TAIREFEYIHQQVPDNIPLTLYLAEAYRHFGH-DDRARLLLEDQLKRHPGDARLERSLAAI-----PVEVKSVTTV 131 (987)
T ss_pred CHH-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHhcCcccHHHHHHHHHh-----ccChhHHHHH
Confidence 344 45999999999999999999999999999998 9999999999999999998888777554 7889999999
Q ss_pred HHHHhhCCCCHHHHHHHHHH--------HHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 045024 82 QRAVSLSPDDSVSGEALCEL--------LEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAI 153 (1173)
Q Consensus 82 ~~al~~~p~~~~a~~~La~~--------~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al 153 (1173)
+++++.+|++.+++..++.. |.+.++..+++. .+.+..+|........++.+|..+|+|++|+..+++++
T Consensus 132 e~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~--lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~ 209 (987)
T PRK09782 132 EELLAQQKACDAVPTLRCRSEVGQNALRLAQLPVARAQLN--DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEAR 209 (987)
T ss_pred HHHHHhCCCChhHHHHHHHHhhccchhhhhhHHHHHHHHH--HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHH
Confidence 99999999999999999998 777766666666 44444444555666777999999999999999999999
Q ss_pred HhCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhh---cCCCHH
Q 045024 154 RGYPTSPHLWEALGLAYHR-LGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKI---SSENVS 229 (1173)
Q Consensus 154 ~~~p~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~---~p~~~~ 229 (1173)
+..|.+......++.+|.. +++ +++...++..++ +++.++..++..|.+.|+.++|...+++.-.. +|++..
T Consensus 210 k~~pl~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk---~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~ 285 (987)
T PRK09782 210 QQNTLSAAERRQWFDVLLAGQLD-DRLLALQSQGIF---TDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKS 285 (987)
T ss_pred hcCCCCHHHHHHHHHHHHHhhCH-HHHHHHhchhcc---cCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHH
Confidence 9999999999999999998 577 888888765333 78899999999999999999999888875443 355555
Q ss_pred HHHHHHHHHHHH----------------------HHHHHHhhcHHHHHHHHHHHHHHHHHHhhhcCChHHHHHHhchHHH
Q 045024 230 AHYGLASGLLGL----------------------AKQCINLGAFRWGASLLEDACKVAEANTRLAGNMSCIWKLHGDIQL 287 (1173)
Q Consensus 230 a~~~la~~~~~l----------------------~~~~~a~g~~~~A~~~l~~Al~~~~~~~~~~~~~~~~~~~~g~~~~ 287 (1173)
-.+.++.....- .......+.+.. +. ......+........ ...
T Consensus 286 ~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~----~~~~~~~~~~~~~~r---~~~ 351 (987)
T PRK09782 286 WLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDA-------AQ----KLLATLPANEMLEER---YAV 351 (987)
T ss_pred HHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHH-------HH----HHhcCCCcchHHHHH---Hhh
Confidence 555555443220 011111111111 11 111111111110000 000
Q ss_pred HHhhccchhhhhhc---hhhhhhhhhh--hhHhhHhhhhHHHHHHHHHHHHHHhcCCC---CHHHHHHHHHHHHHHhh--
Q 045024 288 TYAKCFPWAEERQS---LEFDVETFSA--SIVSWKTTCLMAAISSKSSYQRALYLAPW---QANIYTDIAITSDLIYS-- 357 (1173)
Q Consensus 288 ~~~~~~~~~~~~~~---l~~~~~~~~~--~~~~~~~~~~~~~~~A~~~~~~al~l~p~---~~~~~~~la~~~~~~g~-- 357 (1173)
... .....+.... .......... .-..+.....|+.++|...|++++...++ +..+...++.+|...+.
T Consensus 352 ~~~-~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 430 (987)
T PRK09782 352 SVA-TRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLA 430 (987)
T ss_pred ccc-cCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCccc
Confidence 000 0000000000 0000000001 11123334456788999999999986443 23456688888888766
Q ss_pred -HHHhhhhhh-------hh-------hHHHHHHHHHHHhhcCC--CHHHHHHHHHhhc--ccHHHHHHHHHHHhcCCCcH
Q 045024 358 -LNEAYGHYQ-------SA-------WHVSEKMALGALLLEGD--NCQFWVTLGCLSN--YNGLKQHALIRGLQLDVSLA 418 (1173)
Q Consensus 358 -~~eA~~~~~-------~~-------~~~A~k~~~~al~~~p~--~~~~~~~Lg~~~~--~~~~a~~a~~kal~l~p~~~ 418 (1173)
..++..... .. ...+...+.+++...|. ++.+|..+|.++. ..+.|..+|.+++...|++.
T Consensus 431 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~~~~~eAi~a~~~Al~~~Pd~~ 510 (987)
T PRK09782 431 TPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRDTLPGVALYAWLQAEQRQPDAW 510 (987)
T ss_pred chHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHhCCcHHHHHHHHHHHHhCCchH
Confidence 223322100 00 12345556777888888 9999999998887 45578888999999999754
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhHHHHhHHHHHHhcCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHH
Q 045024 419 DAWAHIGKLYGEVGEKKLARQAFDSARSIDPSLALPWAGMSADVQASESLVDDAFESCLRAVQILPLAE-FQIGLAKLAK 497 (1173)
Q Consensus 419 ~a~~~Lg~~y~~~g~~e~A~~~f~~al~~~P~~~~a~~~l~a~~~~~~g~~~eA~~~~~~al~~~p~~~-~~~~la~l~~ 497 (1173)
....+|.++...|++++|+..|+++....|.+ ..++. .+.++...|++++|...|+++++.+|... ....++....
T Consensus 511 -~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~-~a~~~-la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~ 587 (987)
T PRK09782 511 -QHRAVAYQAYQVEDYATALAAWQKISLHDMSN-EDLLA-AANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRY 587 (987)
T ss_pred -HHHHHHHHHHHCCCHHHHHHHHHHHhccCCCc-HHHHH-HHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 46667888889999999999999988776654 55666 56688899999999999999999988543 3333333333
Q ss_pred HhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHHHh
Q 045024 498 LSGHLSSSQVFGAIQQAIQRGPHYPESHNLYGLVCEARSDYQAAVVSYRLARYAISSSSGTVPNSHFQDISINLARSLSR 577 (1173)
Q Consensus 498 ~~g~~~~~~A~~~l~~al~~~P~~~~a~~~lg~i~~~~g~~~~A~~~~~kAl~l~~~~pe~~~~~~~~~~~~~La~~~~~ 577 (1173)
..|+ .++|+..++++++.+|+ +.++..+|.++.+.|++++|+..|++++.+ .|+ ...++.++|.++..
T Consensus 588 ~~Gr--~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l---~Pd------~~~a~~nLG~aL~~ 655 (987)
T PRK09782 588 IPGQ--PELALNDLTRSLNIAPS-ANAYVARATIYRQRHNVPAAVSDLRAALEL---EPN------NSNYQAALGYALWD 655 (987)
T ss_pred hCCC--HHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCC------CHHHHHHHHHHHHH
Confidence 3466 67999999999999997 999999999999999999999999999644 343 44599999999999
Q ss_pred cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHhhhccccccchhhhhHHHHHHHHHHhcChhhh
Q 045024 578 AGNALDAVRECESLERQGMLDAEVLQVYAFSLWQLGKYDLALSMARNLASSVSAMEQSSAAASVSFICRLLYHISGLDST 657 (1173)
Q Consensus 578 ~g~~~eAi~~~~~~~~~~p~~~~~~~~la~a~~~~g~~~eA~~~~~~aL~~~p~~~~~~~~~~~~~la~l~~~~g~~~~A 657 (1173)
.|++++|+..|+++++..|.++.++..+|.++...|++++|+..|+++++..| ....+....+.+.......+.+
T Consensus 656 ~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P-----~~a~i~~~~g~~~~~~~~~~~a 730 (987)
T PRK09782 656 SGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDID-----NQALITPLTPEQNQQRFNFRRL 730 (987)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-----CCchhhhhhhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999888 3345555666666666666666
Q ss_pred hHHhh
Q 045024 658 INSIL 662 (1173)
Q Consensus 658 ~~~l~ 662 (1173)
.+.+.
T Consensus 731 ~~~~~ 735 (987)
T PRK09782 731 HEEVG 735 (987)
T ss_pred HHHHH
Confidence 54333
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-30 Score=321.69 Aligned_cols=446 Identities=16% Similarity=0.105 Sum_probs=270.3
Q ss_pred HHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q 045024 57 AVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQ 136 (1173)
Q Consensus 57 ~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~ 136 (1173)
+..+..+|..++. .|++++|+..|+++++..|+ +..+..+|.+|...|++++|+..++++++.+|++..+++.+|.++
T Consensus 127 a~~~k~~G~~~~~-~~~~~~Ai~~y~~al~~~p~-~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~ 204 (615)
T TIGR00990 127 AAKLKEKGNKAYR-NKDFNKAIKLYSKAIECKPD-PVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAY 204 (615)
T ss_pred HHHHHHHHHHHHH-cCCHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 3445667777777 77777777777777777774 556777777777777777777777777777777777777777777
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHH
Q 045024 137 LHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQ 216 (1173)
Q Consensus 137 ~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~ 216 (1173)
..+|++++|+..|..+...++.+......+..... ...+......+++..|.+...+..++..+. ..+...+...
T Consensus 205 ~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l----~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 279 (615)
T TIGR00990 205 DGLGKYADALLDLTASCIIDGFRNEQSAQAVERLL----KKFAESKAKEILETKPENLPSVTFVGNYLQ-SFRPKPRPAG 279 (615)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHH----HHHHHHHHHHHHhcCCCCCCCHHHHHHHHH-HccCCcchhh
Confidence 77777777777776666555443322211111111 134455555666666666555555655442 2233344444
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHhhhcCChHHHHHHhchHHHHHhhccchh
Q 045024 217 FQLALKISSENVSAHYGLASGLLGLAKQCINLGAFRWGASLLEDACKVAEANTRLAGNMSCIWKLHGDIQLTYAKCFPWA 296 (1173)
Q Consensus 217 ~~~al~~~p~~~~a~~~la~~~~~l~~~~~a~g~~~~A~~~l~~Al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 296 (1173)
+....+.++.....+..++...... ...+.+++|+..|++++... ...+.....+..+|.++...
T Consensus 280 ~~~~~~~~~~~~~~~~~l~~~~~e~----~~~~~y~~A~~~~~~al~~~----~~~~~~a~a~~~lg~~~~~~------- 344 (615)
T TIGR00990 280 LEDSNELDEETGNGQLQLGLKSPES----KADESYEEAARAFEKALDLG----KLGEKEAIALNLRGTFKCLK------- 344 (615)
T ss_pred hhcccccccccccchHHHHHHHHHh----hhhhhHHHHHHHHHHHHhcC----CCChhhHHHHHHHHHHHHHc-------
Confidence 5555555555554444444433322 22333444443333333211 00111111111111111111
Q ss_pred hhhhchhhhhhhhhhhhHhhHhhhhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHhhhhhhhhhHHHHHHH
Q 045024 297 EERQSLEFDVETFSASIVSWKTTCLMAAISSKSSYQRALYLAPWQANIYTDIAITSDLIYSLNEAYGHYQSAWHVSEKMA 376 (1173)
Q Consensus 297 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~A~k~~ 376 (1173)
+++++|+..|+++++++|.....+..+|.++...|++++|
T Consensus 345 -------------------------g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA--------------- 384 (615)
T TIGR00990 345 -------------------------GKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKA--------------- 384 (615)
T ss_pred -------------------------CCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHH---------------
Confidence 1123344444444444444444444444444444444333
Q ss_pred HHHHhhcCCCHHHHHHHHHhhcccHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhHHH
Q 045024 377 LGALLLEGDNCQFWVTLGCLSNYNGLKQHALIRGLQLDVSLADAWAHIGKLYGEVGEKKLARQAFDSARSIDPSLALPWA 456 (1173)
Q Consensus 377 ~~al~~~p~~~~~~~~Lg~~~~~~~~a~~a~~kal~l~p~~~~a~~~Lg~~y~~~g~~e~A~~~f~~al~~~P~~~~a~~ 456 (1173)
...|+++++.+|+++.+++.+|.++...|++++|+..|+++++++|++..++.
T Consensus 385 ---------------------------~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~ 437 (615)
T TIGR00990 385 ---------------------------EEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHI 437 (615)
T ss_pred ---------------------------HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHH
Confidence 34455555666666666666666666666666666666666666666666665
Q ss_pred HhHHHHHHhcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 045024 457 GMSADVQASESLVDDAFESCLRAVQILPLAEFQIGLAKLAKLSGHLSSSQVFGAIQQAIQRGPHYPESHNLYGLVCEARS 536 (1173)
Q Consensus 457 ~l~a~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~la~l~~~~g~~~~~~A~~~l~~al~~~P~~~~a~~~lg~i~~~~g 536 (1173)
. ++.++...|++++|+. .+++++...|+++.++..+|.++...|
T Consensus 438 ~-la~~~~~~g~~~eA~~-----------------------------------~~~~al~~~P~~~~~~~~lg~~~~~~g 481 (615)
T TIGR00990 438 Q-LGVTQYKEGSIASSMA-----------------------------------TFRRCKKNFPEAPDVYNYYGELLLDQN 481 (615)
T ss_pred H-HHHHHHHCCCHHHHHH-----------------------------------HHHHHHHhCCCChHHHHHHHHHHHHcc
Confidence 5 4446666666665555 555555566888999999999999999
Q ss_pred CHHHHHHHHHHHHHHhhcCCCCCC-CCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCh
Q 045024 537 DYQAAVVSYRLARYAISSSSGTVP-NSHFQDISINLARSLSRAGNALDAVRECESLERQGMLDAEVLQVYAFSLWQLGKY 615 (1173)
Q Consensus 537 ~~~~A~~~~~kAl~l~~~~pe~~~-~~~~~~~~~~La~~~~~~g~~~eAi~~~~~~~~~~p~~~~~~~~la~a~~~~g~~ 615 (1173)
++++|++.|++++.+ .|+... .......+...+..+...|++++|++.++++++.+|++..++..+|.++...|++
T Consensus 482 ~~~~A~~~~~~Al~l---~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~ 558 (615)
T TIGR00990 482 KFDEAIEKFDTAIEL---EKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDV 558 (615)
T ss_pred CHHHHHHHHHHHHhc---CCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCH
Confidence 999999999999655 332211 1111122222333444579999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhcc
Q 045024 616 DLALSMARNLASSVS 630 (1173)
Q Consensus 616 ~eA~~~~~~aL~~~p 630 (1173)
++|++.|+++++..+
T Consensus 559 ~eAi~~~e~A~~l~~ 573 (615)
T TIGR00990 559 DEALKLFERAAELAR 573 (615)
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999998665
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.5e-28 Score=306.38 Aligned_cols=409 Identities=13% Similarity=0.094 Sum_probs=296.6
Q ss_pred HHHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 045024 22 PSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCEL 101 (1173)
Q Consensus 22 ~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~~ 101 (1173)
+..+..+|..++..++ |++|+..|+++++..|+ +..+..+|.+|.. .|++++|+..++++++++|++..+++.+|.+
T Consensus 127 a~~~k~~G~~~~~~~~-~~~Ai~~y~~al~~~p~-~~~~~n~a~~~~~-l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a 203 (615)
T TIGR00990 127 AAKLKEKGNKAYRNKD-FNKAIKLYSKAIECKPD-PVYYSNRAACHNA-LGDWEKVVEDTTAALELDPDYSKALNRRANA 203 (615)
T ss_pred HHHHHHHHHHHHHcCC-HHHHHHHHHHHHhcCCc-hHHHHHHHHHHHH-hCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 4567789999999988 99999999999999996 7889999999999 9999999999999999999999999999999
Q ss_pred HHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-----------
Q 045024 102 LEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAY----------- 170 (1173)
Q Consensus 102 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~----------- 170 (1173)
|...|++++|+..+..+...++.+......+...... ..+......+++..|.+...+..++..+
T Consensus 204 ~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (615)
T TIGR00990 204 YDGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLK----KFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAG 279 (615)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHH----HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhh
Confidence 9999999999999988877665433221111111111 2333444444455554433333333322
Q ss_pred ----------------------H---HcCCHHHHHHHHHHHHHhC---CCChHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 045024 171 ----------------------H---RLGMFSAAIKSYGRAIELD---DTSIFPLLESGNIFLMLGNFRKGVEQFQLALK 222 (1173)
Q Consensus 171 ----------------------~---~~g~~~~A~~~~~~al~~~---p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~ 222 (1173)
. ..+++++|++.|+++++.+ |....++..+|.++..+|++++|+..|+++++
T Consensus 280 ~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~ 359 (615)
T TIGR00990 280 LEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIE 359 (615)
T ss_pred hhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1 1245666666666666542 44555666666666666666666666666666
Q ss_pred hcCCCHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHhhhcCChHHHHHHhchHHHHHhhccchhhhhhch
Q 045024 223 ISSENVSAHYGLASGLLGLAKQCINLGAFRWGASLLEDACKVAEANTRLAGNMSCIWKLHGDIQLTYAKCFPWAEERQSL 302 (1173)
Q Consensus 223 ~~p~~~~a~~~la~~~~~l~~~~~a~g~~~~A~~~l~~Al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l 302 (1173)
.+|++...+..+|.++...|+
T Consensus 360 l~P~~~~~~~~la~~~~~~g~----------------------------------------------------------- 380 (615)
T TIGR00990 360 LDPRVTQSYIKRASMNLELGD----------------------------------------------------------- 380 (615)
T ss_pred cCCCcHHHHHHHHHHHHHCCC-----------------------------------------------------------
Confidence 666666555555555544333
Q ss_pred hhhhhhhhhhhHhhHhhhhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHhhhhhhhhhHHHHHHHHHHHhh
Q 045024 303 EFDVETFSASIVSWKTTCLMAAISSKSSYQRALYLAPWQANIYTDIAITSDLIYSLNEAYGHYQSAWHVSEKMALGALLL 382 (1173)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~A~k~~~~al~~ 382 (1173)
+++|+..|+++++.+|+++.+++.+|.++...|++++|
T Consensus 381 ---------------------~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A--------------------- 418 (615)
T TIGR00990 381 ---------------------PDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQA--------------------- 418 (615)
T ss_pred ---------------------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH---------------------
Confidence 45678888889999999999999999999999988877
Q ss_pred cCCCHHHHHHHHHhhcccHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhHHHHhHHHH
Q 045024 383 EGDNCQFWVTLGCLSNYNGLKQHALIRGLQLDVSLADAWAHIGKLYGEVGEKKLARQAFDSARSIDPSLALPWAGMSADV 462 (1173)
Q Consensus 383 ~p~~~~~~~~Lg~~~~~~~~a~~a~~kal~l~p~~~~a~~~Lg~~y~~~g~~e~A~~~f~~al~~~P~~~~a~~~l~a~~ 462 (1173)
...|++++.++|++..++..+|.++.+.|++++|+..|+++++.+|+++.++.. .+.+
T Consensus 419 ---------------------~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~-lg~~ 476 (615)
T TIGR00990 419 ---------------------GKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNY-YGEL 476 (615)
T ss_pred ---------------------HHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHH-HHHH
Confidence 447788888899999999999999999999999999999999999999999988 6779
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCch-HHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Q 045024 463 QASESLVDDAFESCLRAVQILPLA-EFQIGLAKLAKLSGHLSSSQVFGAIQQAIQRGPHYPESHNLYGLVCEARSDYQAA 541 (1173)
Q Consensus 463 ~~~~g~~~eA~~~~~~al~~~p~~-~~~~~la~l~~~~g~~~~~~A~~~l~~al~~~P~~~~a~~~lg~i~~~~g~~~~A 541 (1173)
+...|++++|++.|++++++.|.. ....... ..+...+.++...|++++|
T Consensus 477 ~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~-----------------------------~l~~~a~~~~~~~~~~~eA 527 (615)
T TIGR00990 477 LLDQNKFDEAIEKFDTAIELEKETKPMYMNVL-----------------------------PLINKALALFQWKQDFIEA 527 (615)
T ss_pred HHHccCHHHHHHHHHHHHhcCCccccccccHH-----------------------------HHHHHHHHHHHHhhhHHHH
Confidence 999999999999999999988742 1111100 0111122233345777777
Q ss_pred HHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 045024 542 VVSYRLARYAISSSSGTVPNSHFQDISINLARSLSRAGNALDAVRECESLERQGMLD 598 (1173)
Q Consensus 542 ~~~~~kAl~l~~~~pe~~~~~~~~~~~~~La~~~~~~g~~~eAi~~~~~~~~~~p~~ 598 (1173)
+..|++++.+ .|+ ...++..+|.++...|++++|++.|+++++..+..
T Consensus 528 ~~~~~kAl~l---~p~------~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~ 575 (615)
T TIGR00990 528 ENLCEKALII---DPE------CDIAVATMAQLLLQQGDVDEALKLFERAAELARTE 575 (615)
T ss_pred HHHHHHHHhc---CCC------cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccH
Confidence 7777777433 232 22366677777777777777777777776665543
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.4e-25 Score=278.75 Aligned_cols=339 Identities=9% Similarity=-0.032 Sum_probs=269.8
Q ss_pred HHHHHHHHHHccCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 045024 25 HLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEH 104 (1173)
Q Consensus 25 ~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~ 104 (1173)
....+..+...|+ +++|...++.++...|+++.+++.+|.+... .|++++|+..|+++++.+|+++.++..+|.++..
T Consensus 45 ~~~~~~~~~~~g~-~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~-~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~ 122 (656)
T PRK15174 45 IILFAIACLRKDE-TDVGLTLLSDRVLTAKNGRDLLRRWVISPLA-SSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLK 122 (656)
T ss_pred HHHHHHHHHhcCC-cchhHHHhHHHHHhCCCchhHHHHHhhhHhh-cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 3444555666666 8888888888888888888888888888888 8888888888888888888888888888888888
Q ss_pred CCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 045024 105 GGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYG 184 (1173)
Q Consensus 105 ~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 184 (1173)
.|++++|+..++++++.+|+++.++..+|.++...|++++|+..+++++...|+++.++..++ .+...|++++|+..++
T Consensus 123 ~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~-~l~~~g~~~eA~~~~~ 201 (656)
T PRK15174 123 SKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATCL-SFLNKSRLPEDHDLAR 201 (656)
T ss_pred cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHH-HHHHcCCHHHHHHHHH
Confidence 888888888888888888888888888888888888888888888888888888887776654 4778888888888888
Q ss_pred HHHHhCCC-ChHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHH
Q 045024 185 RAIELDDT-SIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLASGLLGLAKQCINLGAFRWGASLLEDACK 263 (1173)
Q Consensus 185 ~al~~~p~-~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~l~~~~~a~g~~~~A~~~l~~Al~ 263 (1173)
++++.+|. .......++.++...|++++|+..|+++++.+|+++.++..+|.++...|+ +++|.
T Consensus 202 ~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~--------------~~eA~- 266 (656)
T PRK15174 202 ALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGR--------------SREAK- 266 (656)
T ss_pred HHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC--------------chhhH-
Confidence 88887653 334445567788888888888888888888888888888777777777665 11111
Q ss_pred HHHHHhhhcCChHHHHHHhchHHHHHhhccchhhhhhchhhhhhhhhhhhHhhHhhhhHHHHHHHHHHHHHHhcCCCCHH
Q 045024 264 VAEANTRLAGNMSCIWKLHGDIQLTYAKCFPWAEERQSLEFDVETFSASIVSWKTTCLMAAISSKSSYQRALYLAPWQAN 343 (1173)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~ 343 (1173)
.+|+..|++++..+|+++.
T Consensus 267 -------------------------------------------------------------~~A~~~~~~Al~l~P~~~~ 285 (656)
T PRK15174 267 -------------------------------------------------------------LQAAEHWRHALQFNSDNVR 285 (656)
T ss_pred -------------------------------------------------------------HHHHHHHHHHHhhCCCCHH
Confidence 1467778888888888888
Q ss_pred HHHHHHHHHHHHhhHHHhhhhhhhhhHHHHHHHHHHHhhcCCCHHHHHHHHHhhcccHHHHHHHHHHHhcCCCcHHHHHH
Q 045024 344 IYTDIAITSDLIYSLNEAYGHYQSAWHVSEKMALGALLLEGDNCQFWVTLGCLSNYNGLKQHALIRGLQLDVSLADAWAH 423 (1173)
Q Consensus 344 ~~~~la~~~~~~g~~~eA~~~~~~~~~~A~k~~~~al~~~p~~~~~~~~Lg~~~~~~~~a~~a~~kal~l~p~~~~a~~~ 423 (1173)
++..+|.++...|++++| ...+++++.++|+++.++..
T Consensus 286 a~~~lg~~l~~~g~~~eA------------------------------------------~~~l~~al~l~P~~~~a~~~ 323 (656)
T PRK15174 286 IVTLYADALIRTGQNEKA------------------------------------------IPLLQQSLATHPDLPYVRAM 323 (656)
T ss_pred HHHHHHHHHHHCCCHHHH------------------------------------------HHHHHHHHHhCCCCHHHHHH
Confidence 888888888888887776 34566777778888888888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCChhHHHHhHHHHHHhcCCHHHHHHHHHHHHhcCCc
Q 045024 424 IGKLYGEVGEKKLARQAFDSARSIDPSLALPWAGMSADVQASESLVDDAFESCLRAVQILPL 485 (1173)
Q Consensus 424 Lg~~y~~~g~~e~A~~~f~~al~~~P~~~~a~~~l~a~~~~~~g~~~eA~~~~~~al~~~p~ 485 (1173)
+|.+|...|++++|+..|++++..+|+++..+.. .+.++...|++++|+..|+++++..|.
T Consensus 324 La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~-~a~al~~~G~~deA~~~l~~al~~~P~ 384 (656)
T PRK15174 324 YARALRQVGQYTAASDEFVQLAREKGVTSKWNRY-AAAALLQAGKTSEAESVFEHYIQARAS 384 (656)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHH-HHHHHHHCCCHHHHHHHHHHHHHhChh
Confidence 8888888888888888888888888887655544 455777888888888888888888774
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=4e-25 Score=274.52 Aligned_cols=307 Identities=9% Similarity=-0.059 Sum_probs=264.2
Q ss_pred HHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q 045024 57 AVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQ 136 (1173)
Q Consensus 57 ~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~ 136 (1173)
..-....+..... .|++++|...++.++...|+++.++..++......|++++|+..++++++.+|+++.++..+|.++
T Consensus 42 ~~~~~~~~~~~~~-~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l 120 (656)
T PRK15174 42 EQNIILFAIACLR-KDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVL 120 (656)
T ss_pred ccCHHHHHHHHHh-cCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 3445556677778 899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHH
Q 045024 137 LHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQ 216 (1173)
Q Consensus 137 ~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~ 216 (1173)
...|++++|+..|++++..+|+++.++..++.++...|++++|+..+++++...|++..++..++ .+...|++++|+..
T Consensus 121 ~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~-~l~~~g~~~eA~~~ 199 (656)
T PRK15174 121 LKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATCL-SFLNKSRLPEDHDL 199 (656)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHH-HHHHcCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999888877664 47889999999999
Q ss_pred HHHHHhhcCCCHH-HHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHhhhcCChHHHHHHhchHHHHHhhccch
Q 045024 217 FQLALKISSENVS-AHYGLASGLLGLAKQCINLGAFRWGASLLEDACKVAEANTRLAGNMSCIWKLHGDIQLTYAKCFPW 295 (1173)
Q Consensus 217 ~~~al~~~p~~~~-a~~~la~~~~~l~~~~~a~g~~~~A~~~l~~Al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 295 (1173)
++++++.+|.... ....++.++...|+
T Consensus 200 ~~~~l~~~~~~~~~~~~~l~~~l~~~g~---------------------------------------------------- 227 (656)
T PRK15174 200 ARALLPFFALERQESAGLAVDTLCAVGK---------------------------------------------------- 227 (656)
T ss_pred HHHHHhcCCCcchhHHHHHHHHHHHCCC----------------------------------------------------
Confidence 9999888764322 22222222222222
Q ss_pred hhhhhchhhhhhhhhhhhHhhHhhhhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHhhhhhhhhhHHHHHH
Q 045024 296 AEERQSLEFDVETFSASIVSWKTTCLMAAISSKSSYQRALYLAPWQANIYTDIAITSDLIYSLNEAYGHYQSAWHVSEKM 375 (1173)
Q Consensus 296 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~A~k~ 375 (1173)
+++|+..|++++...|+++.++..+|.++...|++++|.
T Consensus 228 ----------------------------~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~------------- 266 (656)
T PRK15174 228 ----------------------------YQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAK------------- 266 (656)
T ss_pred ----------------------------HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhH-------------
Confidence 346788888899999999999999999999999887651
Q ss_pred HHHHHhhcCCCHHHHHHHHHhhcccHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhHH
Q 045024 376 ALGALLLEGDNCQFWVTLGCLSNYNGLKQHALIRGLQLDVSLADAWAHIGKLYGEVGEKKLARQAFDSARSIDPSLALPW 455 (1173)
Q Consensus 376 ~~~al~~~p~~~~~~~~Lg~~~~~~~~a~~a~~kal~l~p~~~~a~~~Lg~~y~~~g~~e~A~~~f~~al~~~P~~~~a~ 455 (1173)
..|...|++++..+|+++.++..+|.++...|++++|+..|+++++.+|+++.++
T Consensus 267 -------------------------~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~ 321 (656)
T PRK15174 267 -------------------------LQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVR 321 (656)
T ss_pred -------------------------HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 2345678899999999999999999999999999999999999999999999998
Q ss_pred HHhHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 045024 456 AGMSADVQASESLVDDAFESCLRAVQILP 484 (1173)
Q Consensus 456 ~~l~a~~~~~~g~~~eA~~~~~~al~~~p 484 (1173)
.. ++.++...|++++|+..|++++..+|
T Consensus 322 ~~-La~~l~~~G~~~eA~~~l~~al~~~P 349 (656)
T PRK15174 322 AM-YARALRQVGQYTAASDEFVQLAREKG 349 (656)
T ss_pred HH-HHHHHHHCCCHHHHHHHHHHHHHhCc
Confidence 88 67799999999999998877776665
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.7e-25 Score=278.32 Aligned_cols=444 Identities=12% Similarity=-0.001 Sum_probs=328.0
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCC
Q 045024 44 EHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSP 123 (1173)
Q Consensus 44 ~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p 123 (1173)
..++. -...|-++.-..-...+... .|+.++|+..+.++...+|....++..+|.++...|++++|+..++++++.+|
T Consensus 3 ~~~~~-~~~~~~~~~~~~d~~~ia~~-~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P 80 (765)
T PRK10049 3 SWLRQ-ALKSALSNNQIADWLQIALW-AGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEP 80 (765)
T ss_pred hhhhh-hhccCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 34444 44566667666777777788 88888898888888888888888888888888888999999999999888888
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 045024 124 RAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNI 203 (1173)
Q Consensus 124 ~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~ 203 (1173)
.++.++..++.++...|++++|+..++++++..|+++. +..+|.++...|++++|+..++++++..|++..++..++.+
T Consensus 81 ~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~ 159 (765)
T PRK10049 81 QNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQA 159 (765)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 88888888888888999999999999999999998888 88889999999999999999999999999998888888988
Q ss_pred HHHcCChHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHhhhcCChHHHHHHhc
Q 045024 204 FLMLGNFRKGVEQFQLALKISSENVSAHYGLASGLLGLAKQCINLGAFRWGASLLEDACKVAEANTRLAGNMSCIWKLHG 283 (1173)
Q Consensus 204 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~l~~~~~a~g~~~~A~~~l~~Al~~~~~~~~~~~~~~~~~~~~g 283 (1173)
+...|+.++|+..++++.. .|+..... .. ..+....... ..... .
T Consensus 160 l~~~~~~e~Al~~l~~~~~-~p~~~~~l--------~~-----------------~~~~~~~r~~--~~~~~-------~ 204 (765)
T PRK10049 160 LRNNRLSAPALGAIDDANL-TPAEKRDL--------EA-----------------DAAAELVRLS--FMPTR-------S 204 (765)
T ss_pred HHHCCChHHHHHHHHhCCC-CHHHHHHH--------HH-----------------HHHHHHHHhh--ccccc-------C
Confidence 8888888889888887665 44311000 00 0000000000 00000 0
Q ss_pred hHHHHHhhccchhhhhhchhhhhhhhhhhhHhhHhhhhHHHHHHHHHHHHHHhcCCCCHHHHHHH-------HHHHHHHh
Q 045024 284 DIQLTYAKCFPWAEERQSLEFDVETFSASIVSWKTTCLMAAISSKSSYQRALYLAPWQANIYTDI-------AITSDLIY 356 (1173)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~l-------a~~~~~~g 356 (1173)
+ .......++|+..|+.+++..|.++...... ...+...|
T Consensus 205 ~---------------------------------~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g 251 (765)
T PRK10049 205 E---------------------------------KERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARD 251 (765)
T ss_pred h---------------------------------hHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhh
Confidence 0 0000112467778888886644443322111 11122333
Q ss_pred hHHHhhhhhhhhhHHHHHHHHHHHhhcCCCHHHHHHHHHhhcccHHHHHHHHHHHhcCCCcH-HHHHHHHHHHHHcCCHH
Q 045024 357 SLNEAYGHYQSAWHVSEKMALGALLLEGDNCQFWVTLGCLSNYNGLKQHALIRGLQLDVSLA-DAWAHIGKLYGEVGEKK 435 (1173)
Q Consensus 357 ~~~eA~~~~~~~~~~A~k~~~~al~~~p~~~~~~~~Lg~~~~~~~~a~~a~~kal~l~p~~~-~a~~~Lg~~y~~~g~~e 435 (1173)
+++ .|+..|+++++..|..| .+...+|.+|...|+++
T Consensus 252 ~~~------------------------------------------eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e 289 (765)
T PRK10049 252 RYK------------------------------------------DVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPE 289 (765)
T ss_pred hHH------------------------------------------HHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcH
Confidence 333 34556777776654322 23444699999999999
Q ss_pred HHHHHHHHHHhhCCCCh----hHHHHhHHHHHHhcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCCChHHHHHHH
Q 045024 436 LARQAFDSARSIDPSLA----LPWAGMSADVQASESLVDDAFESCLRAVQILPLAEFQIGLAKLAKLSGHLSSSQVFGAI 511 (1173)
Q Consensus 436 ~A~~~f~~al~~~P~~~----~a~~~l~a~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~la~l~~~~g~~~~~~A~~~l 511 (1173)
+|+..|+++++.+|.++ ..... ++.++...|++++|+..++++....|.....+.
T Consensus 290 ~A~~~l~~~l~~~p~~~~~~~~~~~~-L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~-------------------- 348 (765)
T PRK10049 290 KAQSILTELFYHPETIADLSDEELAD-LFYSLLESENYPGALTVTAHTINNSPPFLRLYG-------------------- 348 (765)
T ss_pred HHHHHHHHHhhcCCCCCCCChHHHHH-HHHHHHhcccHHHHHHHHHHHhhcCCceEeecC--------------------
Confidence 99999999999888762 23444 455778999999999999999988874211000
Q ss_pred HHHHHhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHH
Q 045024 512 QQAIQRGPHY--PESHNLYGLVCEARSDYQAAVVSYRLARYAISSSSGTVPNSHFQDISINLARSLSRAGNALDAVRECE 589 (1173)
Q Consensus 512 ~~al~~~P~~--~~a~~~lg~i~~~~g~~~~A~~~~~kAl~l~~~~pe~~~~~~~~~~~~~La~~~~~~g~~~eAi~~~~ 589 (1173)
.....|++ ..++..+|.++...|++++|++.+++++ ...|++ ..++..+|.++...|++++|++.++
T Consensus 349 --~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al---~~~P~n------~~l~~~lA~l~~~~g~~~~A~~~l~ 417 (765)
T PRK10049 349 --SPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELA---YNAPGN------QGLRIDYASVLQARGWPRAAENELK 417 (765)
T ss_pred --CCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHH---HhCCCC------HHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 11124664 4578899999999999999999999985 444443 4499999999999999999999999
Q ss_pred HHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHhhhcccc
Q 045024 590 SLERQGMLDAEVLQVYAFSLWQLGKYDLALSMARNLASSVSAM 632 (1173)
Q Consensus 590 ~~~~~~p~~~~~~~~la~a~~~~g~~~eA~~~~~~aL~~~p~~ 632 (1173)
++++..|++...++.+|.++...|++++|...++++++..|+.
T Consensus 418 ~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~ 460 (765)
T PRK10049 418 KAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQD 460 (765)
T ss_pred HHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC
Confidence 9999999999999999999999999999999999999988843
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.5e-25 Score=277.85 Aligned_cols=441 Identities=13% Similarity=0.037 Sum_probs=333.4
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhh
Q 045024 8 LLQLEDSLEANPDDPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSL 87 (1173)
Q Consensus 8 i~~l~~al~~~P~~~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~ 87 (1173)
+..+++ -...|-++....-...+....|+ +++|+..+.++...+|..+.++..+|.++.. .|++++|+..|+++++.
T Consensus 2 ~~~~~~-~~~~~~~~~~~~d~~~ia~~~g~-~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~-~g~~~~A~~~~~~al~~ 78 (765)
T PRK10049 2 LSWLRQ-ALKSALSNNQIADWLQIALWAGQ-DAEVITVYNRYRVHMQLPARGYAAVAVAYRN-LKQWQNSLTLWQKALSL 78 (765)
T ss_pred chhhhh-hhccCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHh
Confidence 455666 55667777777777777777887 8999999999999899999999999999999 99999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 045024 88 SPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALG 167 (1173)
Q Consensus 88 ~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la 167 (1173)
+|.++.++..++.++...|++++|+..++++++..|+++. +..+|.++...|++++|+..++++++.+|+++.++..++
T Consensus 79 ~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la 157 (765)
T PRK10049 79 EPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYV 157 (765)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 9999999999999999999999999999999999999999 999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCChH-----HHHHHHHHHH-----HcCCh---HHHHHHHHHHHhhcCCCHHHHHHH
Q 045024 168 LAYHRLGMFSAAIKSYGRAIELDDTSIF-----PLLESGNIFL-----MLGNF---RKGVEQFQLALKISSENVSAHYGL 234 (1173)
Q Consensus 168 ~~~~~~g~~~~A~~~~~~al~~~p~~~~-----a~~~la~~~~-----~~g~~---~~A~~~~~~al~~~p~~~~a~~~l 234 (1173)
.++...|+.++|++.++++.. .|+... ....+..+.. ..+++ ++|++.++.+++..|.++......
T Consensus 158 ~~l~~~~~~e~Al~~l~~~~~-~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~ 236 (765)
T PRK10049 158 QALRNNRLSAPALGAIDDANL-TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADY 236 (765)
T ss_pred HHHHHCCChHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHH
Confidence 999999999999999998775 554211 1112222222 12234 667777777776555444332111
Q ss_pred HHHHHH-HHHHHHHhhcHHHHHHHHHHHHHHHHHHhhhcCChHHHHHHhchHHHHHhhccchhhhhhchhhhhhhhhhhh
Q 045024 235 ASGLLG-LAKQCINLGAFRWGASLLEDACKVAEANTRLAGNMSCIWKLHGDIQLTYAKCFPWAEERQSLEFDVETFSASI 313 (1173)
Q Consensus 235 a~~~~~-l~~~~~a~g~~~~A~~~l~~Al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 313 (1173)
..+... ++. .
T Consensus 237 ~~a~~d~l~~-----------------------------------------L---------------------------- 247 (765)
T PRK10049 237 QRARIDRLGA-----------------------------------------L---------------------------- 247 (765)
T ss_pred HHHHHHHHHH-----------------------------------------H----------------------------
Confidence 111111 000 0
Q ss_pred HhhHhhhhHHHHHHHHHHHHHHhcCCCCH-HHHHHHHHHHHHHhhHHHhhhhhhhhhHHHHHHHHHHHhhcCCCHHHHHH
Q 045024 314 VSWKTTCLMAAISSKSSYQRALYLAPWQA-NIYTDIAITSDLIYSLNEAYGHYQSAWHVSEKMALGALLLEGDNCQFWVT 392 (1173)
Q Consensus 314 ~~~~~~~~~~~~~A~~~~~~al~l~p~~~-~~~~~la~~~~~~g~~~eA~~~~~~~~~~A~k~~~~al~~~p~~~~~~~~ 392 (1173)
...+.+++|+..|+++++..|..+ .+...++.++...|++++|
T Consensus 248 -----l~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A------------------------------- 291 (765)
T PRK10049 248 -----LARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKA------------------------------- 291 (765)
T ss_pred -----HHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHH-------------------------------
Confidence 001224578888888888764332 2333457777777777666
Q ss_pred HHHhhcccHHHHHHHHHHHhcCCCc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhHHHHhHHHHHHhcCC
Q 045024 393 LGCLSNYNGLKQHALIRGLQLDVSL----ADAWAHIGKLYGEVGEKKLARQAFDSARSIDPSLALPWAGMSADVQASESL 468 (1173)
Q Consensus 393 Lg~~~~~~~~a~~a~~kal~l~p~~----~~a~~~Lg~~y~~~g~~e~A~~~f~~al~~~P~~~~a~~~l~a~~~~~~g~ 468 (1173)
...|++++..+|.+ ......++.++...|++++|+..++++.+.+|.....+.. ..
T Consensus 292 -----------~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~-------~~-- 351 (765)
T PRK10049 292 -----------QSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGS-------PT-- 351 (765)
T ss_pred -----------HHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCC-------CC--
Confidence 45788888888766 4567888889999999999999999999998864321110 00
Q ss_pred HHHHHHHHHHHHhcCCch---HHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 045024 469 VDDAFESCLRAVQILPLA---EFQIGLAKLAKLSGHLSSSQVFGAIQQAIQRGPHYPESHNLYGLVCEARSDYQAAVVSY 545 (1173)
Q Consensus 469 ~~eA~~~~~~al~~~p~~---~~~~~la~l~~~~g~~~~~~A~~~l~~al~~~P~~~~a~~~lg~i~~~~g~~~~A~~~~ 545 (1173)
..|+. .....++.+....|+ .++|+..+++++...|+++.++..+|.++...|++++|++.+
T Consensus 352 -------------~~p~~~~~~a~~~~a~~l~~~g~--~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l 416 (765)
T PRK10049 352 -------------SIPNDDWLQGQSLLSQVAKYSND--LPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENEL 416 (765)
T ss_pred -------------CCCCchHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 01211 122223333333333 235555666777777899999999999999999999999999
Q ss_pred HHHHHHhhcCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHH
Q 045024 546 RLARYAISSSSGTVPNSHFQDISINLARSLSRAGNALDAVRECESLERQGMLDAEVL 602 (1173)
Q Consensus 546 ~kAl~l~~~~pe~~~~~~~~~~~~~La~~~~~~g~~~eAi~~~~~~~~~~p~~~~~~ 602 (1173)
++++. ..|++. .+++.+|.++...|++++|+..++++++..|+++.+.
T Consensus 417 ~~al~---l~Pd~~------~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~~ 464 (765)
T PRK10049 417 KKAEV---LEPRNI------NLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGVQ 464 (765)
T ss_pred HHHHh---hCCCCh------HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 99964 445443 3899999999999999999999999999999998654
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.7e-22 Score=223.30 Aligned_cols=320 Identities=13% Similarity=0.130 Sum_probs=259.1
Q ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhHHHHhHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 045024 405 HALIRGLQLDVSLADAWAHIGKLYGEVGEKKLARQAFDSARSIDPSLALPWAGMSADVQASESLVDDAFESCLRAVQILP 484 (1173)
Q Consensus 405 ~a~~kal~l~p~~~~a~~~Lg~~y~~~g~~e~A~~~f~~al~~~P~~~~a~~~l~a~~~~~~g~~~eA~~~~~~al~~~p 484 (1173)
..|++++...|.....|...+..+...|+...|...+.++++.+|++.+.|+. ...+.....+++.|..+|.++....|
T Consensus 571 Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwla-avKle~en~e~eraR~llakar~~sg 649 (913)
T KOG0495|consen 571 ALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLA-AVKLEFENDELERARDLLAKARSISG 649 (913)
T ss_pred HHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHH-HHHHhhccccHHHHHHHHHHHhccCC
Confidence 45889999999999999999999999999999999999999999999999998 77788899999999999999999999
Q ss_pred chHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCCCCCCCch
Q 045024 485 LAEFQIGLAKLAKLSGHLSSSQVFGAIQQAIQRGPHYPESHNLYGLVCEARSDYQAAVVSYRLARYAISSSSGTVPNSHF 564 (1173)
Q Consensus 485 ~~~~~~~la~l~~~~g~~~~~~A~~~l~~al~~~P~~~~a~~~lg~i~~~~g~~~~A~~~~~kAl~l~~~~pe~~~~~~~ 564 (1173)
....++..+.+...+++ .++|+..++.+++..|+.+..|.++|.++.+.++.+.|.+.|..-+ ..-|.++.
T Consensus 650 TeRv~mKs~~~er~ld~--~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~---k~cP~~ip---- 720 (913)
T KOG0495|consen 650 TERVWMKSANLERYLDN--VEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGT---KKCPNSIP---- 720 (913)
T ss_pred cchhhHHHhHHHHHhhh--HHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhcc---ccCCCCch----
Confidence 99999999999888888 4699999999999999999999999999999999999999999774 44455555
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHhhhccccccchhhhhHHHH
Q 045024 565 QDISINLARSLSRAGNALDAVRECESLERQGMLDAEVLQVYAFSLWQLGKYDLALSMARNLASSVSAMEQSSAAASVSFI 644 (1173)
Q Consensus 565 ~~~~~~La~~~~~~g~~~eAi~~~~~~~~~~p~~~~~~~~la~a~~~~g~~~eA~~~~~~aL~~~p~~~~~~~~~~~~~l 644 (1173)
.|..|+.+-.+.|+.-.|...+++..-.+|.+...|+...+...+.|+.+.|.....++|+..|.+. ...
T Consensus 721 --LWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg-------~LW- 790 (913)
T KOG0495|consen 721 --LWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSG-------LLW- 790 (913)
T ss_pred --HHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccc-------hhH-
Confidence 8999999999999999999999999999999999999999999999999999999999999888322 111
Q ss_pred HHHHHHhcChhhhhHHhhhCCCCccccchhHHHHHHhhhccCccchHHHHhcccccccCCccchhhHHHHHHHHhhhCCC
Q 045024 645 CRLLYHISGLDSTINSILKMPKGLFQCSKMSFIVSAIHALDHSNRLESVVSSSRNCIASPEEITGMHYLVALNKLVKNGP 724 (1173)
Q Consensus 645 a~l~~~~g~~~~A~~~l~~~p~~~~~~~~~~~~l~~l~~l~~~~~~~~a~~~~~~~~~~~~~~a~~~~l~a~~~~~~~~~ 724 (1173)
+. ...++..|..- .....|+.. ...+| ++ +++.+.+.=.+.
T Consensus 791 aE-----------aI~le~~~~rk-------------------Tks~DALkk---ce~dp----hV--llaia~lfw~e~ 831 (913)
T KOG0495|consen 791 AE-----------AIWLEPRPQRK-------------------TKSIDALKK---CEHDP----HV--LLAIAKLFWSEK 831 (913)
T ss_pred HH-----------HHHhccCcccc-------------------hHHHHHHHh---ccCCc----hh--HHHHHHHHHHHH
Confidence 11 11122222211 111222222 22222 22 333333322222
Q ss_pred CCccccchhHHHHHHHHhcCCCcHHHHHHHHHHhccCCcccchh-hhhhccccCCCcccccCCC
Q 045024 725 ESCLGFNSGIFHLRKVLHVYPNCNLIRNLLGYLLLSSDEWRYSH-VASRCCSLETSDCIKKEGP 787 (1173)
Q Consensus 725 ~~~~~~~~Ai~~l~k~l~~~P~~~~~~~~La~ll~~~~~~~~a~-~a~ra~~l~~~~~~~~~~l 787 (1173)
.++.|.+-|++++..+|++..+|...=...+..|+-++.. ...+|....|-++..|...
T Consensus 832 ----k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~EP~hG~~W~av 891 (913)
T KOG0495|consen 832 ----KIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAEPTHGELWQAV 891 (913)
T ss_pred ----HHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCcHHHHH
Confidence 3489999999999999999999999999999998765544 5667777889888886653
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.2e-24 Score=237.70 Aligned_cols=434 Identities=15% Similarity=0.105 Sum_probs=261.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 045024 126 FWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFL 205 (1173)
Q Consensus 126 ~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~ 205 (1173)
...+-..|+-+++.|+|++|+++|..++.+.|+.+..+.+++-+|...|++++.++...++++++|+...++++.+.++.
T Consensus 115 A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E 194 (606)
T KOG0547|consen 115 AAALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHE 194 (606)
T ss_pred HHHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHH
Confidence 34566789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCChHHHHHHHHHHHhh-cCCCHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHH-HHhhhcCChHHHHHHhc
Q 045024 206 MLGNFRKGVEQFQLALKI-SSENVSAHYGLASGLLGLAKQCINLGAFRWGASLLEDACKVAE-ANTRLAGNMSCIWKLHG 283 (1173)
Q Consensus 206 ~~g~~~~A~~~~~~al~~-~p~~~~a~~~la~~~~~l~~~~~a~g~~~~A~~~l~~Al~~~~-~~~~~~~~~~~~~~~~g 283 (1173)
.+|++++|+....-.--. +-++......+-+++-.+|. .++-+.+. .-....|....+....|
T Consensus 195 ~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~---------------~ka~e~~k~nr~p~lPS~~fi~syf~ 259 (606)
T KOG0547|consen 195 QLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAM---------------KKAKEKLKENRPPVLPSATFIASYFG 259 (606)
T ss_pred hhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHH---------------HHHHHhhcccCCCCCCcHHHHHHHHh
Confidence 999999998766533221 22233333333344444443 22333333 22233333322222222
Q ss_pred hHHHHHhhccchhhhhhchhhhhhhhhhhhHhhHhhhhHHHHHHHHHHHHH-------HhcCCCCHH------HHHHHHH
Q 045024 284 DIQLTYAKCFPWAEERQSLEFDVETFSASIVSWKTTCLMAAISSKSSYQRA-------LYLAPWQAN------IYTDIAI 350 (1173)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a-------l~l~p~~~~------~~~~la~ 350 (1173)
.+...... .... ....................-..+..|...+.+. +..+..+.. ++...|.
T Consensus 260 sF~~~~~~---~~~~--~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gt 334 (606)
T KOG0547|consen 260 SFHADPKP---LFDN--KSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGT 334 (606)
T ss_pred hccccccc---cccC--CCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhh
Confidence 22111000 0000 0000000000000000000001122233322222 222211222 2222222
Q ss_pred HHHHHhhHHHhhhhhhhhhHHHHHHHHHHHhhcCCCHHHHHHHHHhhcccH---HHHHHHHHHHhcCCCcHHHHHHHHHH
Q 045024 351 TSDLIYSLNEAYGHYQSAWHVSEKMALGALLLEGDNCQFWVTLGCLSNYNG---LKQHALIRGLQLDVSLADAWAHIGKL 427 (1173)
Q Consensus 351 ~~~~~g~~~eA~~~~~~~~~~A~k~~~~al~~~p~~~~~~~~Lg~~~~~~~---~a~~a~~kal~l~p~~~~a~~~Lg~~ 427 (1173)
.+...|+.-.+ ..-+..+|.++|.+...+..++.++.+.. .....|.++..++|.++++|++.|++
T Consensus 335 F~fL~g~~~~a-----------~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm 403 (606)
T KOG0547|consen 335 FHFLKGDSLGA-----------QEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQM 403 (606)
T ss_pred hhhhcCCchhh-----------hhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHH
Confidence 33333333333 22244555555555555555555554222 23334555555555555555555555
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCChhHHHHhHHHHHHhcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCCChHHH
Q 045024 428 YGEVGEKKLARQAFDSARSIDPSLALPWAGMSADVQASESLVDDAFESCLRAVQILPLAEFQIGLAKLAKLSGHLSSSQV 507 (1173)
Q Consensus 428 y~~~g~~e~A~~~f~~al~~~P~~~~a~~~l~a~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~la~l~~~~g~~~~~~A 507 (1173)
++-++++++|+..|+++++++|++..+++. ++.+..+.++++ ++
T Consensus 404 ~flL~q~e~A~aDF~Kai~L~pe~~~~~iQ-l~~a~Yr~~k~~-----------------------------------~~ 447 (606)
T KOG0547|consen 404 RFLLQQYEEAIADFQKAISLDPENAYAYIQ-LCCALYRQHKIA-----------------------------------ES 447 (606)
T ss_pred HHHHHHHHHHHHHHHHHhhcChhhhHHHHH-HHHHHHHHHHHH-----------------------------------HH
Confidence 555555555555555555555555555555 222333444333 56
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHHH-hcCCHHHHHH
Q 045024 508 FGAIQQAIQRGPHYPESHNLYGLVCEARSDYQAAVVSYRLARYAISSSSGTVPNSHFQDISINLARSLS-RAGNALDAVR 586 (1173)
Q Consensus 508 ~~~l~~al~~~P~~~~a~~~lg~i~~~~g~~~~A~~~~~kAl~l~~~~pe~~~~~~~~~~~~~La~~~~-~~g~~~eAi~ 586 (1173)
+..|+.+....|+.++++...|.++..+++|+.|++.|++++++-+.. ....-.+..+...|.+.. -.+++..|+.
T Consensus 448 m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~---~~~~v~~~plV~Ka~l~~qwk~d~~~a~~ 524 (606)
T KOG0547|consen 448 MKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPRE---HLIIVNAAPLVHKALLVLQWKEDINQAEN 524 (606)
T ss_pred HHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhcccc---ccccccchhhhhhhHhhhchhhhHHHHHH
Confidence 667777777889999999999999999999999999999997763221 000001122333333322 2489999999
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHhhhc
Q 045024 587 ECESLERQGMLDAEVLQVYAFSLWQLGKYDLALSMARNLASSV 629 (1173)
Q Consensus 587 ~~~~~~~~~p~~~~~~~~la~a~~~~g~~~eA~~~~~~aL~~~ 629 (1173)
.++++++.+|....++..+|.+..+.|+.++|+++|++.+...
T Consensus 525 Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lA 567 (606)
T KOG0547|consen 525 LLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLA 567 (606)
T ss_pred HHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999987744
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.4e-23 Score=267.31 Aligned_cols=653 Identities=12% Similarity=0.033 Sum_probs=464.9
Q ss_pred CHHHHHHHHHHHHHccCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCC-CHHHHHHH
Q 045024 21 DPSLHLDLGLHLWENSESKEKAAEHFVIAAKLN-PQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPD-DSVSGEAL 98 (1173)
Q Consensus 21 ~~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~-~~~a~~~L 98 (1173)
.+..+..+...+...|. +++|...|..+.+.. +.+...+..+...+.. .+..+.|...+..+++..+. +......+
T Consensus 50 ~~~~~n~~i~~l~~~g~-~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~n~l 127 (857)
T PLN03077 50 STHDSNSQLRALCSHGQ-LEQALKLLESMQELRVPVDEDAYVALFRLCEW-KRAVEEGSRVCSRALSSHPSLGVRLGNAM 127 (857)
T ss_pred chhhHHHHHHHHHhCCC-HHHHHHHHHHHHhcCCCCChhHHHHHHHHHhh-CCCHHHHHHHHHHHHHcCCCCCchHHHHH
Confidence 34455666777778877 999999999988742 4456667777788888 89999999999999887654 34456778
Q ss_pred HHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCH
Q 045024 99 CELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRG--YPTSPHLWEALGLAYHRLGMF 176 (1173)
Q Consensus 99 a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~--~p~~~~~~~~la~~~~~~g~~ 176 (1173)
...|.+.|+.+.|...|+++. +.+..+|..+...|.+.|++++|+..|+++... .| +..++..+...+...++.
T Consensus 128 i~~~~~~g~~~~A~~~f~~m~---~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~P-d~~t~~~ll~~~~~~~~~ 203 (857)
T PLN03077 128 LSMFVRFGELVHAWYVFGKMP---ERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRP-DVYTFPCVLRTCGGIPDL 203 (857)
T ss_pred HHHHHhCCChHHHHHHHhcCC---CCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-ChhHHHHHHHHhCCccch
Confidence 888999999999999998875 346678999999999999999999999998763 34 455666677777788888
Q ss_pred HHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhhcHHHHH
Q 045024 177 SAAIKSYGRAIELDD-TSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLASGLLGLAKQCINLGAFRWGA 255 (1173)
Q Consensus 177 ~~A~~~~~~al~~~p-~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~l~~~~~a~g~~~~A~ 255 (1173)
..+.+.+..+++... .+...+..+...|.+.|++++|...|+++.. .+...|..+...|.+.|+ +++|.
T Consensus 204 ~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~---~d~~s~n~li~~~~~~g~-------~~eAl 273 (857)
T PLN03077 204 ARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR---RDCISWNAMISGYFENGE-------CLEGL 273 (857)
T ss_pred hhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC---CCcchhHHHHHHHHhCCC-------HHHHH
Confidence 888888888776542 3566777888889999999999999988643 344566667676666555 55555
Q ss_pred HHHHHHHHHHHHHhhhcCChHH------HHHHhchHHHHHhhccchhhhhhchhhhhhhhhhhhHhhHhhhhHHHHHHHH
Q 045024 256 SLLEDACKVAEANTRLAGNMSC------IWKLHGDIQLTYAKCFPWAEERQSLEFDVETFSASIVSWKTTCLMAAISSKS 329 (1173)
Q Consensus 256 ~~l~~Al~~~~~~~~~~~~~~~------~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~ 329 (1173)
..|.+.... ...|+... .....|+...+. .........+...+...-..+...+...+..++|..
T Consensus 274 ~lf~~M~~~-----g~~Pd~~ty~~ll~a~~~~g~~~~a~----~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~ 344 (857)
T PLN03077 274 ELFFTMREL-----SVDPDLMTITSVISACELLGDERLGR----EMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEK 344 (857)
T ss_pred HHHHHHHHc-----CCCCChhHHHHHHHHHHhcCChHHHH----HHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHH
Confidence 444443321 12222211 111122211111 011111112222333333444555666788899999
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHhhhhhhhhhHHHHHHHHHHHhhcCCCHHHHHHHHHhh--cccHHHHHHH
Q 045024 330 SYQRALYLAPWQANIYTDIAITSDLIYSLNEAYGHYQSAWHVSEKMALGALLLEGDNCQFWVTLGCLS--NYNGLKQHAL 407 (1173)
Q Consensus 330 ~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~A~k~~~~al~~~p~~~~~~~~Lg~~~--~~~~~a~~a~ 407 (1173)
.|++... .+...|+.+...|.+.|++++|...+.. + ......|+...+...+.... .+.+.+.+.+
T Consensus 345 vf~~m~~---~d~~s~n~li~~~~~~g~~~~A~~lf~~-------M--~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~ 412 (857)
T PLN03077 345 VFSRMET---KDAVSWTAMISGYEKNGLPDKALETYAL-------M--EQDNVSPDEITIASVLSACACLGDLDVGVKLH 412 (857)
T ss_pred HHhhCCC---CCeeeHHHHHHHHHhCCCHHHHHHHHHH-------H--HHhCCCCCceeHHHHHHHHhccchHHHHHHHH
Confidence 9987543 3567899999999999999988554331 1 12345577655544444222 2555677777
Q ss_pred HHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhHHHHhHHHHHHhcCCHHHHHHHHHHHHhc-CCc
Q 045024 408 IRGLQLDV-SLADAWAHIGKLYGEVGEKKLARQAFDSARSIDPSLALPWAGMSADVQASESLVDDAFESCLRAVQI-LPL 485 (1173)
Q Consensus 408 ~kal~l~p-~~~~a~~~Lg~~y~~~g~~e~A~~~f~~al~~~P~~~~a~~~l~a~~~~~~g~~~eA~~~~~~al~~-~p~ 485 (1173)
..+.+... .+..++..+...|.+.|++++|.+.|++..+ .+...|.. +...|.+.|+.++|+.+|+++... .|+
T Consensus 413 ~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~---~d~vs~~~-mi~~~~~~g~~~eA~~lf~~m~~~~~pd 488 (857)
T PLN03077 413 ELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE---KDVISWTS-IIAGLRLNNRCFEALIFFRQMLLTLKPN 488 (857)
T ss_pred HHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC---CCeeeHHH-HHHHHHHCCCHHHHHHHHHHHHhCCCCC
Confidence 77776532 3677889999999999999999999998643 35567877 445888999999999999998754 455
Q ss_pred hHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCCCCCCCch
Q 045024 486 AEFQIGLAKLAKLSGHLSSSQVFGAIQQAIQRGP-HYPESHNLYGLVCEARSDYQAAVVSYRLARYAISSSSGTVPNSHF 564 (1173)
Q Consensus 486 ~~~~~~la~l~~~~g~~~~~~A~~~l~~al~~~P-~~~~a~~~lg~i~~~~g~~~~A~~~~~kAl~l~~~~pe~~~~~~~ 564 (1173)
...+..+-......|. .+.+...+..+++... .+......+...|.+.|+.++|...|+.. .+ +
T Consensus 489 ~~t~~~lL~a~~~~g~--l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~------~~-d------ 553 (857)
T PLN03077 489 SVTLIAALSACARIGA--LMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH------EK-D------ 553 (857)
T ss_pred HhHHHHHHHHHhhhch--HHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc------CC-C------
Confidence 5555555555555565 4578888888887643 36667788999999999999999999854 11 1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHhhhccccccchhhhhHHH
Q 045024 565 QDISINLARSLSRAGNALDAVRECESLERQGMLD-AEVLQVYAFSLWQLGKYDLALSMARNLASSVSAMEQSSAAASVSF 643 (1173)
Q Consensus 565 ~~~~~~La~~~~~~g~~~eAi~~~~~~~~~~p~~-~~~~~~la~a~~~~g~~~eA~~~~~~aL~~~p~~~~~~~~~~~~~ 643 (1173)
..+|..+...|.+.|+.++|++.|+++.+.+..+ ..++..+-.++.+.|++++|.++|+.+.+..+ -..+...+..
T Consensus 554 ~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~g---i~P~~~~y~~ 630 (857)
T PLN03077 554 VVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYS---ITPNLKHYAC 630 (857)
T ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhC---CCCchHHHHH
Confidence 3379999999999999999999999998876543 44666677889999999999999999986332 2334456778
Q ss_pred HHHHHHHhcChhhhhHHhhhCCCCccccchhHHHHHHhhhccCccchHHHHhcccccccCCccchhhHHHHHHHHhhhCC
Q 045024 644 ICRLLYHISGLDSTINSILKMPKGLFQCSKMSFIVSAIHALDHSNRLESVVSSSRNCIASPEEITGMHYLVALNKLVKNG 723 (1173)
Q Consensus 644 la~l~~~~g~~~~A~~~l~~~p~~~~~~~~~~~~l~~l~~l~~~~~~~~a~~~~~~~~~~~~~~a~~~~l~a~~~~~~~~ 723 (1173)
+..++.+.|..++|.+.++++|-. |+...+..++.+ +..+++
T Consensus 631 lv~~l~r~G~~~eA~~~~~~m~~~------------------------------------pd~~~~~aLl~a--c~~~~~ 672 (857)
T PLN03077 631 VVDLLGRAGKLTEAYNFINKMPIT------------------------------------PDPAVWGALLNA--CRIHRH 672 (857)
T ss_pred HHHHHHhCCCHHHHHHHHHHCCCC------------------------------------CCHHHHHHHHHH--HHHcCC
Confidence 888888888888888877766522 222222233333 344555
Q ss_pred CCCccccchhHHHHHHHHhcCCCcHHHHHHHHHHhccCCcccchhhhhhcccc
Q 045024 724 PESCLGFNSGIFHLRKVLHVYPNCNLIRNLLGYLLLSSDEWRYSHVASRCCSL 776 (1173)
Q Consensus 724 ~~~~~~~~~Ai~~l~k~l~~~P~~~~~~~~La~ll~~~~~~~~a~~a~ra~~l 776 (1173)
. +.|....++++.++|+++..+..|+++|...|+|+++...++...-
T Consensus 673 ~------e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~ 719 (857)
T PLN03077 673 V------ELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRE 719 (857)
T ss_pred h------HHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence 5 6788889999999999999999999999999999999988777763
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.4e-23 Score=227.63 Aligned_cols=406 Identities=15% Similarity=0.111 Sum_probs=241.3
Q ss_pred HHHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 045024 22 PSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCEL 101 (1173)
Q Consensus 22 ~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~~ 101 (1173)
+..+-..|.-++..++ |++|+++|.++|++.|+.+..|.+++-+|.. .|+|++-++...++++++|+...+++..+..
T Consensus 115 A~~lK~~GN~~f~~kk-Y~eAIkyY~~AI~l~p~epiFYsNraAcY~~-lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A 192 (606)
T KOG0547|consen 115 AAALKTKGNKFFRNKK-YDEAIKYYTQAIELCPDEPIFYSNRAACYES-LGDWEKVIEDCTKALELNPDYVKALLRRASA 192 (606)
T ss_pred HHHHHhhhhhhhhccc-HHHHHHHHHHHHhcCCCCchhhhhHHHHHHH-HhhHHHHHHHHHHHhhcCcHHHHHHHHHHHH
Confidence 3456677888888887 9999999999999999999999999999999 9999999999999999999999999999999
Q ss_pred HHHCCCHHHHHHHHHHHHhh--CCCc---H---HHHHHHHHHHHH--cC-C------HHHHHHHHHHHHH-------hCC
Q 045024 102 LEHGGKESLEVVVCREASDK--SPRA---F---WAFRRLGYLQLH--HK-K------WSEAVQSLQHAIR-------GYP 157 (1173)
Q Consensus 102 ~~~~g~~~~A~~~~~~al~~--~p~~---~---~a~~~la~~~~~--~g-~------~~~A~~~l~~al~-------~~p 157 (1173)
+...|++++|+....-.--. ..+. + ..+...|.--.. .+ + -..-+..|-..+. .++
T Consensus 193 ~E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~ 272 (606)
T KOG0547|consen 193 HEQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNK 272 (606)
T ss_pred HHhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCC
Confidence 99999999998765432111 1110 0 011111111100 00 0 0001111111110 111
Q ss_pred CC---HHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCC----CC---------hHHHHHHHHHHHHcCChHHHHHHHHHH
Q 045024 158 TS---PHLWEALGLAYHR-LGMFSAAIKSYGRAIELDD----TS---------IFPLLESGNIFLMLGNFRKGVEQFQLA 220 (1173)
Q Consensus 158 ~~---~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~p----~~---------~~a~~~la~~~~~~g~~~~A~~~~~~a 220 (1173)
.+ ...-..+-..+.. ...|..|...+.+...... .+ ..++...|..++-.|++-.|.+.|+.+
T Consensus 273 ~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~ 352 (606)
T KOG0547|consen 273 SDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAA 352 (606)
T ss_pred CccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHH
Confidence 11 1111111111111 1245666665555443211 11 455666677777777777777777777
Q ss_pred HhhcCCCHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHhhhcCChHHHHHHhchHHHHHhhccchhhhhh
Q 045024 221 LKISSENVSAHYGLASGLLGLAKQCINLGAFRWGASLLEDACKVAEANTRLAGNMSCIWKLHGDIQLTYAKCFPWAEERQ 300 (1173)
Q Consensus 221 l~~~p~~~~a~~~la~~~~~l~~~~~a~g~~~~A~~~l~~Al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 300 (1173)
+.++|.+...+..++.+|....+.
T Consensus 353 I~l~~~~~~lyI~~a~~y~d~~~~-------------------------------------------------------- 376 (606)
T KOG0547|consen 353 IKLDPAFNSLYIKRAAAYADENQS-------------------------------------------------------- 376 (606)
T ss_pred HhcCcccchHHHHHHHHHhhhhcc--------------------------------------------------------
Confidence 777777766666677776664441
Q ss_pred chhhhhhhhhhhhHhhHhhhhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHhhhhhhhhhHHHHHHHHHHH
Q 045024 301 SLEFDVETFSASIVSWKTTCLMAAISSKSSYQRALYLAPWQANIYTDIAITSDLIYSLNEAYGHYQSAWHVSEKMALGAL 380 (1173)
Q Consensus 301 ~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~A~k~~~~al 380 (1173)
.+-...|.++..++|.++++|+..|.++..++++++|..
T Consensus 377 ------------------------~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~a----------------- 415 (606)
T KOG0547|consen 377 ------------------------EKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIA----------------- 415 (606)
T ss_pred ------------------------HHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHH-----------------
Confidence 123345566666777777777777777777776666622
Q ss_pred hhcCCCHHHHHHHHHhhcccHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhHHHHhHH
Q 045024 381 LLEGDNCQFWVTLGCLSNYNGLKQHALIRGLQLDVSLADAWAHIGKLYGEVGEKKLARQAFDSARSIDPSLALPWAGMSA 460 (1173)
Q Consensus 381 ~~~p~~~~~~~~Lg~~~~~~~~a~~a~~kal~l~p~~~~a~~~Lg~~y~~~g~~e~A~~~f~~al~~~P~~~~a~~~l~a 460 (1173)
.|++++.++|.+..++..++.+.+++++++++...|+.+.+..|+.++.+.. -+
T Consensus 416 -------------------------DF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~-fA 469 (606)
T KOG0547|consen 416 -------------------------DFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNL-FA 469 (606)
T ss_pred -------------------------HHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHH-HH
Confidence 2334444444444444444444444444444444444444444444444433 33
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCc-------hHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 045024 461 DVQASESLVDDAFESCLRAVQILPL-------AEFQIGLAKLAKLSGHLSSSQVFGAIQQAIQRGPHYPESHNLYGLVCE 533 (1173)
Q Consensus 461 ~~~~~~g~~~eA~~~~~~al~~~p~-------~~~~~~la~l~~~~g~~~~~~A~~~l~~al~~~P~~~~a~~~lg~i~~ 533 (1173)
.++..++++++|++.|.+++++.|. +..+.+-+.+..+- ..+..+|...++++++.+|....++..+|.+..
T Consensus 470 eiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qw-k~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~l 548 (606)
T KOG0547|consen 470 EILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQW-KEDINQAENLLRKAIELDPKCEQAYETLAQFEL 548 (606)
T ss_pred HHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhch-hhhHHHHHHHHHHHHccCchHHHHHHHHHHHHH
Confidence 3444444444444444444444332 01111111111110 012346777777888888888999999999999
Q ss_pred HcCCHHHHHHHHHHHHHHhh
Q 045024 534 ARSDYQAAVVSYRLARYAIS 553 (1173)
Q Consensus 534 ~~g~~~~A~~~~~kAl~l~~ 553 (1173)
++|+.++|+++|+++..+..
T Consensus 549 Q~~~i~eAielFEksa~lAr 568 (606)
T KOG0547|consen 549 QRGKIDEAIELFEKSAQLAR 568 (606)
T ss_pred HHhhHHHHHHHHHHHHHHHH
Confidence 99999999999999976644
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.3e-22 Score=247.28 Aligned_cols=475 Identities=13% Similarity=0.016 Sum_probs=257.8
Q ss_pred CCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHH
Q 045024 53 NPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRL 132 (1173)
Q Consensus 53 ~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l 132 (1173)
.|..+...+..+.+..+ .|+++.|+..|+++++.+|.++.....++.++...|+.++|+.++++++...|........+
T Consensus 30 ~p~~~~~~y~~aii~~r-~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llal 108 (822)
T PRK14574 30 NPAMADTQYDSLIIRAR-AGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASA 108 (822)
T ss_pred CccchhHHHHHHHHHHh-CCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHH
Confidence 44444444444444444 45555555555555544444432222444444444455555555544442222223333333
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH
Q 045024 133 GYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRK 212 (1173)
Q Consensus 133 a~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~ 212 (1173)
|.++...|++++|++.|+++++.+|+++.++..++..+...++.++|++.++++...+|.+... ..++.++...++..+
T Consensus 109 A~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~-l~layL~~~~~~~~~ 187 (822)
T PRK14574 109 ARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNY-MTLSYLNRATDRNYD 187 (822)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH-HHHHHHHHhcchHHH
Confidence 4444444555555555555555555444444444444444455555555555544444443222 333333333444444
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHhhhcCChHHHHHHhchHHHHHhhc
Q 045024 213 GVEQFQLALKISSENVSAHYGLASGLLGLAKQCINLGAFRWGASLLEDACKVAEANTRLAGNMSCIWKLHGDIQLTYAKC 292 (1173)
Q Consensus 213 A~~~~~~al~~~p~~~~a~~~la~~~~~l~~~~~a~g~~~~A~~~l~~Al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 292 (1173)
|++.|+++++.+|++......+..++...|- ...|.+.....+.........+.....+...+...
T Consensus 188 AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~--------------~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a 253 (822)
T PRK14574 188 ALQASSEAVRLAPTSEEVLKNHLEILQRNRI--------------VEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMA 253 (822)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--------------cHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhc
Confidence 5555555555555444444444444433333 12222222222211111111111111111110000
Q ss_pred cchhhhhhchhhhhhhhhhhhHhhHhhhhHHHHHHHHHHHHHHhcCCCCHH-------HHHHHHHHHHHHhhHHHhhhhh
Q 045024 293 FPWAEERQSLEFDVETFSASIVSWKTTCLMAAISSKSSYQRALYLAPWQAN-------IYTDIAITSDLIYSLNEAYGHY 365 (1173)
Q Consensus 293 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~-------~~~~la~~~~~~g~~~eA~~~~ 365 (1173)
.... ... .......+.|+..++..+...|..|. +......++...+++.+++
T Consensus 254 ~~~~------~~~------------~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi--- 312 (822)
T PRK14574 254 VLPT------RSE------------TERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLI--- 312 (822)
T ss_pred cccc------ccc------------hhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHH---
Confidence 0000 000 00112245788888888874443332 2334444444555555442
Q ss_pred hhhhHHHHHHHHHHHhhcCCCHHHHHHHHHhhcccHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 045024 366 QSAWHVSEKMALGALLLEGDNCQFWVTLGCLSNYNGLKQHALIRGLQLD-VSLADAWAHIGKLYGEVGEKKLARQAFDSA 444 (1173)
Q Consensus 366 ~~~~~~A~k~~~~al~~~p~~~~~~~~Lg~~~~~~~~a~~a~~kal~l~-p~~~~a~~~Lg~~y~~~g~~e~A~~~f~~a 444 (1173)
..|+...... |--+.+....|+.|+..+++++|+.+|+++
T Consensus 313 ---------------------------------------~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~ 353 (822)
T PRK14574 313 ---------------------------------------KEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSL 353 (822)
T ss_pred ---------------------------------------HHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence 2333332222 223457788999999999999999999999
Q ss_pred HhhCCC------ChhHHHHhHHHHHHhcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhC
Q 045024 445 RSIDPS------LALPWAGMSADVQASESLVDDAFESCLRAVQILPLAEFQIGLAKLAKLSGHLSSSQVFGAIQQAIQRG 518 (1173)
Q Consensus 445 l~~~P~------~~~a~~~l~a~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~la~l~~~~g~~~~~~A~~~l~~al~~~ 518 (1173)
+.-+|. ....... +..+|...+++++|..++++..+..|.....++ .... .-+
T Consensus 354 ~~~~~~~~~~~~~~~~~~~-L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~------~~~~--------------~pn 412 (822)
T PRK14574 354 YYSDGKTFRNSDDLLDADD-LYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYG------LPGK--------------EPN 412 (822)
T ss_pred hhccccccCCCcchHHHHH-HHHHHHhcccHHHHHHHHHHHHhcCCcEEeccC------CCCC--------------CCC
Confidence 886532 2222234 556888999999999999999886551000000 0000 114
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 045024 519 PHYPESHNLYGLVCEARSDYQAAVVSYRLARYAISSSSGTVPNSHFQDISINLARSLSRAGNALDAVRECESLERQGMLD 598 (1173)
Q Consensus 519 P~~~~a~~~lg~i~~~~g~~~~A~~~~~kAl~l~~~~pe~~~~~~~~~~~~~La~~~~~~g~~~eAi~~~~~~~~~~p~~ 598 (1173)
|+...+...++.++...|++.+|++.+++. +...|++.. +...+|.++...|.+.+|.+.++.+...+|.+
T Consensus 413 ~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l---~~~aP~n~~------l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~ 483 (822)
T PRK14574 413 DDWIEGQTLLVQSLVALNDLPTAQKKLEDL---SSTAPANQN------LRIALASIYLARDLPRKAEQELKAVESLAPRS 483 (822)
T ss_pred ccHHHHHHHHHHHHHHcCCHHHHHHHHHHH---HHhCCCCHH------HHHHHHHHHHhcCCHHHHHHHHHHHhhhCCcc
Confidence 566777788888888888888888888877 344455444 78888888888888888888888888888888
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHhhhccccc
Q 045024 599 AEVLQVYAFSLWQLGKYDLALSMARNLASSVSAME 633 (1173)
Q Consensus 599 ~~~~~~la~a~~~~g~~~eA~~~~~~aL~~~p~~~ 633 (1173)
..+...+|.++..+|++++|....+.+++..|+..
T Consensus 484 ~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~ 518 (822)
T PRK14574 484 LILERAQAETAMALQEWHQMELLTDDVISRSPEDI 518 (822)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCch
Confidence 88888888888888888888888888888888554
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.2e-20 Score=244.57 Aligned_cols=592 Identities=12% Similarity=-0.030 Sum_probs=413.2
Q ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHccCCHHHHHHHHH
Q 045024 5 GALLLQLEDSLEAN-PDDPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQ-NAVAFRYLGHYYTRFSIDTQRAIKCYQ 82 (1173)
Q Consensus 5 ~aAi~~l~~al~~~-P~~~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~g~~~eA~~~~~ 82 (1173)
..|+..|....+.. |.+...+..+...+...+. ++.|...+..+++..+. +......+-..|.+ .|+.+.|...|+
T Consensus 68 ~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~n~li~~~~~-~g~~~~A~~~f~ 145 (857)
T PLN03077 68 EQALKLLESMQELRVPVDEDAYVALFRLCEWKRA-VEEGSRVCSRALSSHPSLGVRLGNAMLSMFVR-FGELVHAWYVFG 145 (857)
T ss_pred HHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCC-HHHHHHHHHHHHHcCCCCCchHHHHHHHHHHh-CCChHHHHHHHh
Confidence 34688888887742 3455566666666666666 89999999999877654 34566777788889 999999999999
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCC
Q 045024 83 RAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDK--SPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGY-PTS 159 (1173)
Q Consensus 83 ~al~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~-p~~ 159 (1173)
+.. +.+...|..+...|.+.|++++|+..|+++... .| +..++..+...+...++...+.+.+..+++.. +.+
T Consensus 146 ~m~---~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~P-d~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~ 221 (857)
T PLN03077 146 KMP---ERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRP-DVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELD 221 (857)
T ss_pred cCC---CCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-ChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcc
Confidence 864 346678999999999999999999999998754 34 45566667777778888889988888887653 235
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhh--cCCCHHHHHHHHHH
Q 045024 160 PHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKI--SSENVSAHYGLASG 237 (1173)
Q Consensus 160 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~la~~ 237 (1173)
...+..+...|.+.|++++|...|++.. ..+..+|..+...|.+.|++++|+..|+++.+. .|+. ..+..+...
T Consensus 222 ~~~~n~Li~~y~k~g~~~~A~~lf~~m~---~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~-~ty~~ll~a 297 (857)
T PLN03077 222 VDVVNALITMYVKCGDVVSARLVFDRMP---RRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDL-MTITSVISA 297 (857)
T ss_pred cchHhHHHHHHhcCCCHHHHHHHHhcCC---CCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCh-hHHHHHHHH
Confidence 6678888899999999999999998864 345678888999999999999999999998764 3443 333344444
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHHHH-HHHhhhcCChHHHHHHhchHHHHHhhccchhhhhhchhhhhhhhhhhhHhh
Q 045024 238 LLGLAKQCINLGAFRWGASLLEDACKVA-EANTRLAGNMSCIWKLHGDIQLTYAKCFPWAEERQSLEFDVETFSASIVSW 316 (1173)
Q Consensus 238 ~~~l~~~~~a~g~~~~A~~~l~~Al~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 316 (1173)
+.. .|+.+.+.+.+....+.- .........+...+...|+...+..-+..... .+...+ .....
T Consensus 298 ~~~-------~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~------~d~~s~--n~li~ 362 (857)
T PLN03077 298 CEL-------LGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET------KDAVSW--TAMIS 362 (857)
T ss_pred HHh-------cCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC------CCeeeH--HHHHH
Confidence 443 444666666555554321 00111222223333444444433322111110 011112 22333
Q ss_pred HhhhhHHHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHhhHHHhhhhhhhhhHHHHHHHHHHHhhcC-CCHHHHHHH
Q 045024 317 KTTCLMAAISSKSSYQRALYLA--PWQANIYTDIAITSDLIYSLNEAYGHYQSAWHVSEKMALGALLLEG-DNCQFWVTL 393 (1173)
Q Consensus 317 ~~~~~~~~~~A~~~~~~al~l~--p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~A~k~~~~al~~~p-~~~~~~~~L 393 (1173)
.+...+..++|+..|++..+.. |+ ...+..+...+...|+++++. +.+..+.+... .+...++.+
T Consensus 363 ~~~~~g~~~~A~~lf~~M~~~g~~Pd-~~t~~~ll~a~~~~g~~~~a~-----------~l~~~~~~~g~~~~~~~~n~L 430 (857)
T PLN03077 363 GYEKNGLPDKALETYALMEQDNVSPD-EITIASVLSACACLGDLDVGV-----------KLHELAERKGLISYVVVANAL 430 (857)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCCCC-ceeHHHHHHHHhccchHHHHH-----------HHHHHHHHhCCCcchHHHHHH
Confidence 4455677899999999876543 54 345666667788888888773 33444444432 345566667
Q ss_pred HHhhc---ccHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhHHHHhHHHHHHhcCCHH
Q 045024 394 GCLSN---YNGLKQHALIRGLQLDVSLADAWAHIGKLYGEVGEKKLARQAFDSARSIDPSLALPWAGMSADVQASESLVD 470 (1173)
Q Consensus 394 g~~~~---~~~~a~~a~~kal~l~p~~~~a~~~Lg~~y~~~g~~e~A~~~f~~al~~~P~~~~a~~~l~a~~~~~~g~~~ 470 (1173)
-..+. +.+.|.+.|++.. ..+...|..+...|.+.|++++|+..|+++....+.+...+.. +..++.+.|+.+
T Consensus 431 i~~y~k~g~~~~A~~vf~~m~---~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~-lL~a~~~~g~l~ 506 (857)
T PLN03077 431 IEMYSKCKCIDKALEVFHNIP---EKDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIA-ALSACARIGALM 506 (857)
T ss_pred HHHHHHcCCHHHHHHHHHhCC---CCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHH-HHHHHhhhchHH
Confidence 66666 4445666676653 3467899999999999999999999999998654444455555 344788999999
Q ss_pred HHHHHHHHHHhcCC--chHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 045024 471 DAFESCLRAVQILP--LAEFQIGLAKLAKLSGHLSSSQVFGAIQQAIQRGPHYPESHNLYGLVCEARSDYQAAVVSYRLA 548 (1173)
Q Consensus 471 eA~~~~~~al~~~p--~~~~~~~la~l~~~~g~~~~~~A~~~l~~al~~~P~~~~a~~~lg~i~~~~g~~~~A~~~~~kA 548 (1173)
.+.+.+..+++... +......+...+.+.|+ .++|...|+.. +.+..+|+.+...|.+.|+.++|++.|++.
T Consensus 507 ~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~--~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M 580 (857)
T PLN03077 507 CGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGR--MNYAWNQFNSH----EKDVVSWNILLTGYVAHGKGSMAVELFNRM 580 (857)
T ss_pred HhHHHHHHHHHhCCCccceechHHHHHHHHcCC--HHHHHHHHHhc----CCChhhHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999999988754 33344455666666776 56888888876 668889999999999999999999999988
Q ss_pred HHHhhcCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--CHHHHHHHHHHHHHcCChHHHHHHHHHHh
Q 045024 549 RYAISSSSGTVPNSHFQDISINLARSLSRAGNALDAVRECESLERQGML--DAEVLQVYAFSLWQLGKYDLALSMARNLA 626 (1173)
Q Consensus 549 l~l~~~~pe~~~~~~~~~~~~~La~~~~~~g~~~eAi~~~~~~~~~~p~--~~~~~~~la~a~~~~g~~~eA~~~~~~aL 626 (1173)
.+. ...|+. .++..+...+.+.|+.++|.++|+.+.+..+. +...+..+..++.+.|+.++|.+.++++-
T Consensus 581 ~~~-g~~Pd~-------~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~ 652 (857)
T PLN03077 581 VES-GVNPDE-------VTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMP 652 (857)
T ss_pred HHc-CCCCCc-------ccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCC
Confidence 532 223432 25777788899999999999999999854322 34678889999999999999999999862
Q ss_pred hhccccccchhhhhHHHHHHHHHHhcChhhhh
Q 045024 627 SSVSAMEQSSAAASVSFICRLLYHISGLDSTI 658 (1173)
Q Consensus 627 ~~~p~~~~~~~~~~~~~la~l~~~~g~~~~A~ 658 (1173)
..| ++.++..+...+...|+.+.+.
T Consensus 653 -~~p------d~~~~~aLl~ac~~~~~~e~~e 677 (857)
T PLN03077 653 -ITP------DPAVWGALLNACRIHRHVELGE 677 (857)
T ss_pred -CCC------CHHHHHHHHHHHHHcCChHHHH
Confidence 112 2344444444454455555443
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.1e-20 Score=221.58 Aligned_cols=573 Identities=16% Similarity=0.133 Sum_probs=371.4
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 045024 5 GALLLQLEDSLEANPDDPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRA 84 (1173)
Q Consensus 5 ~aAi~~l~~al~~~P~~~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~a 84 (1173)
..|.+.+.++++.+|.++.+|+.+|.+|-++|+ .+++...+-.|..++|++.+.|..++....+ +|++++|.-+|.+|
T Consensus 156 eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd-~eK~l~~~llAAHL~p~d~e~W~~ladls~~-~~~i~qA~~cy~rA 233 (895)
T KOG2076|consen 156 EEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGD-IEKALNFWLLAAHLNPKDYELWKRLADLSEQ-LGNINQARYCYSRA 233 (895)
T ss_pred HHHHHHHHHHHHhCccchhhHHHHHHHHHHccc-HHHHHHHHHHHHhcCCCChHHHHHHHHHHHh-cccHHHHHHHHHHH
Confidence 346999999999999999999999999999987 9999999999999999999999999999999 99999999999999
Q ss_pred HhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---
Q 045024 85 VSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRA-----FWAFRRLGYLQLHHKKWSEAVQSLQHAIRGY--- 156 (1173)
Q Consensus 85 l~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~-----~~a~~~la~~~~~~g~~~~A~~~l~~al~~~--- 156 (1173)
++.+|.+.......+.+|.+.|+...|...|.+++...|.. -......+..+...++-+.|++.++.++...
T Consensus 234 I~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~ 313 (895)
T KOG2076|consen 234 IQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDE 313 (895)
T ss_pred HhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhcccc
Confidence 99999999999999999999999999999999999999832 1122233444455555555555555443310
Q ss_pred -----------------------------------C--------------------------------------------
Q 045024 157 -----------------------------------P-------------------------------------------- 157 (1173)
Q Consensus 157 -----------------------------------p-------------------------------------------- 157 (1173)
+
T Consensus 314 ~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~ 393 (895)
T KOG2076|consen 314 ASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKER 393 (895)
T ss_pred ccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhccccc
Confidence 0
Q ss_pred ------------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCChHHHHHHHH
Q 045024 158 ------------------TSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDT-SIFPLLESGNIFLMLGNFRKGVEQFQ 218 (1173)
Q Consensus 158 ------------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~la~~~~~~g~~~~A~~~~~ 218 (1173)
++++.+..++..|...|++.+|+..|..+....+. +..+|+.+|.+|..+|.+++|++.|+
T Consensus 394 e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~ 473 (895)
T KOG2076|consen 394 ELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYE 473 (895)
T ss_pred chHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHH
Confidence 11567888999999999999999999999887664 46799999999999999999999999
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHH--HhhhcCChHHHHHHhchHHHHHhhccchh
Q 045024 219 LALKISSENVSAHYGLASGLLGLAKQCINLGAFRWGASLLEDACKVAEA--NTRLAGNMSCIWKLHGDIQLTYAKCFPWA 296 (1173)
Q Consensus 219 ~al~~~p~~~~a~~~la~~~~~l~~~~~a~g~~~~A~~~l~~Al~~~~~--~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 296 (1173)
+++...|++.++...++.++..+|+ .++|.+.++.-...-.. -.........+.....+++...++...|.
T Consensus 474 kvl~~~p~~~D~Ri~Lasl~~~~g~-------~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi 546 (895)
T KOG2076|consen 474 KVLILAPDNLDARITLASLYQQLGN-------HEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFI 546 (895)
T ss_pred HHHhcCCCchhhhhhHHHHHHhcCC-------HHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHH
Confidence 9999999999999999999998887 44444333331100000 00011111222222233333333222222
Q ss_pred hhhhchhhhh----------------------hhhhhhhHhhH------hhhhHHHHHHHHH--HHHHHhcCCCCH----
Q 045024 297 EERQSLEFDV----------------------ETFSASIVSWK------TTCLMAAISSKSS--YQRALYLAPWQA---- 342 (1173)
Q Consensus 297 ~~~~~l~~~~----------------------~~~~~~~~~~~------~~~~~~~~~A~~~--~~~al~l~p~~~---- 342 (1173)
.....+-..- ..+........ ...-....++... -..+.....-..
T Consensus 547 ~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwf 626 (895)
T KOG2076|consen 547 NTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDWF 626 (895)
T ss_pred HHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHHH
Confidence 2111100000 00000000000 0000000000000 001111111112
Q ss_pred HHHHHHHHHHHHHhhHHHhhhhhhhhhHHHHHHHHHHHhhcCCCHHH--HHHHH-Hhhc-ccHHHHHHHHHHHhc-----
Q 045024 343 NIYTDIAITSDLIYSLNEAYGHYQSAWHVSEKMALGALLLEGDNCQF--WVTLG-CLSN-YNGLKQHALIRGLQL----- 413 (1173)
Q Consensus 343 ~~~~~la~~~~~~g~~~eA~~~~~~~~~~A~k~~~~al~~~p~~~~~--~~~Lg-~~~~-~~~~a~~a~~kal~l----- 413 (1173)
+....+..++.+.+++++|......+... .....++.-..- +..+. .++. +++.+..++.-.+..
T Consensus 627 el~~e~i~~L~k~~r~qeAl~vv~~a~~~------~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~ 700 (895)
T KOG2076|consen 627 ELFRELILSLAKLQRVQEALSVVFTALEA------YIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYL 700 (895)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHhh------hhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhh
Confidence 34556677778888888886654432221 011111111101 11121 2222 666777766666655
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhHHHHhHHHHHHhcCCHHHHHHHHHHHHhcCCc-hH--HHH
Q 045024 414 DVSLADAWAHIGKLYGEVGEKKLARQAFDSARSIDPSLALPWAGMSADVQASESLVDDAFESCLRAVQILPL-AE--FQI 490 (1173)
Q Consensus 414 ~p~~~~a~~~Lg~~y~~~g~~e~A~~~f~~al~~~P~~~~a~~~l~a~~~~~~g~~~eA~~~~~~al~~~p~-~~--~~~ 490 (1173)
+|.....|+..-......++-.-=...+.++...+|++..+.....|..+...+.+..|+..|.++...+|+ |- ..+
T Consensus 701 ~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~~pd~Pl~nl~l 780 (895)
T KOG2076|consen 701 DVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQNPDSPLINLCL 780 (895)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHHhCCCCcHHHHHH
Confidence 666666776433444444554444555556666677774444433465667889999999999999999885 43 344
Q ss_pred HHHHHHHHhCC------CChHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCCCC---
Q 045024 491 GLAKLAKLSGH------LSSSQVFGAIQQAIQRGPH--YPESHNLYGLVCEARSDYQAAVVSYRLARYAISSSSGTV--- 559 (1173)
Q Consensus 491 ~la~l~~~~g~------~~~~~A~~~l~~al~~~P~--~~~a~~~lg~i~~~~g~~~~A~~~~~kAl~l~~~~pe~~--- 559 (1173)
+++.+....+. ....+++..+.+..+..-. ...+.+++|..|...|-..-|+.+|++++......-..+
T Consensus 781 glafih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~~YYekvL~~~p~~~~~~~~d 860 (895)
T KOG2076|consen 781 GLAFIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAVSYYEKVLEVSPKDVTDPKED 860 (895)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhCCCccccccccCC
Confidence 44444433332 2234777788777776544 788999999999999999999999999976533221111
Q ss_pred CCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 045024 560 PNSHFQDISINLARSLSRAGNALDAVRECESLE 592 (1173)
Q Consensus 560 ~~~~~~~~~~~La~~~~~~g~~~eAi~~~~~~~ 592 (1173)
...-...+-+||.-+|...|+...|.+++++.+
T Consensus 861 ~~dLrkeAA~NL~LIY~~SGn~~lArqil~kyl 893 (895)
T KOG2076|consen 861 NYDLRKEAAYNLHLIYKKSGNMQLARQILEKYL 893 (895)
T ss_pred cccHHHHHHhhhhhhhccCCcHHHHHHHHHhhc
Confidence 112234578889999999999999988887643
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.8e-20 Score=218.18 Aligned_cols=584 Identities=15% Similarity=0.096 Sum_probs=391.1
Q ss_pred HHHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 045024 22 PSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCEL 101 (1173)
Q Consensus 22 ~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~~ 101 (1173)
...++..|..++..|+ +++|...+.++++.+|.++.+|+.+|.+|.+ .|+.+++...+-.|-.++|++.+.|..++..
T Consensus 139 l~~ll~eAN~lfarg~-~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEq-rGd~eK~l~~~llAAHL~p~d~e~W~~ladl 216 (895)
T KOG2076|consen 139 LRQLLGEANNLFARGD-LEEAEEILMEVIKQDPRNPIAYYTLGEIYEQ-RGDIEKALNFWLLAAHLNPKDYELWKRLADL 216 (895)
T ss_pred HHHHHHHHHHHHHhCC-HHHHHHHHHHHHHhCccchhhHHHHHHHHHH-cccHHHHHHHHHHHHhcCCCChHHHHHHHHH
Confidence 4567777888888987 9999999999999999999999999999999 9999999999999999999999999999999
Q ss_pred HHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHcCCH
Q 045024 102 LEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTS-----PHLWEALGLAYHRLGMF 176 (1173)
Q Consensus 102 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~-----~~~~~~la~~~~~~g~~ 176 (1173)
...+|++.+|+-+|.++++.+|.+.......+.+|.++|+...|+..|.+++...|.. .......+..+...++-
T Consensus 217 s~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~ 296 (895)
T KOG2076|consen 217 SEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNER 296 (895)
T ss_pred HHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHH
Confidence 9999999999999999999999999999999999999999999999999999999932 22334457778888888
Q ss_pred HHHHHHHHHHHHhCC--CChHHHHHHHHHHHHcCChHHHHHHHHHHHhh--cCCCHHH--------------------HH
Q 045024 177 SAAIKSYGRAIELDD--TSIFPLLESGNIFLMLGNFRKGVEQFQLALKI--SSENVSA--------------------HY 232 (1173)
Q Consensus 177 ~~A~~~~~~al~~~p--~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~a--------------------~~ 232 (1173)
+.|++.++.++.... ...+.+..++.++....+++.|.......... .+++... -+
T Consensus 297 e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~ 376 (895)
T KOG2076|consen 297 ERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSY 376 (895)
T ss_pred HHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCc
Confidence 999999999998332 34566778999999999999998877665541 1111000 00
Q ss_pred HHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHH-HHhhhcCChHHHHHHhchHHHHHhhccchhhhhhchhhhhhhhhh
Q 045024 233 GLASGLLGLAKQCINLGAFRWGASLLEDACKVAE-ANTRLAGNMSCIWKLHGDIQLTYAKCFPWAEERQSLEFDVETFSA 311 (1173)
Q Consensus 233 ~la~~~~~l~~~~~a~g~~~~A~~~l~~Al~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 311 (1173)
.+-.+....+-.....++..+++ ..+. ............+....+.+
T Consensus 377 ~l~v~rl~icL~~L~~~e~~e~l-------l~~l~~~n~~~~d~~dL~~d~a~al------------------------- 424 (895)
T KOG2076|consen 377 DLRVIRLMICLVHLKERELLEAL-------LHFLVEDNVWVSDDVDLYLDLADAL------------------------- 424 (895)
T ss_pred cchhHhHhhhhhcccccchHHHH-------HHHHHHhcCChhhhHHHHHHHHHHH-------------------------
Confidence 00001111111111111121111 1111 00000111222222222222
Q ss_pred hhHhhHhhhhHHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHhhHHHhhhhhhhhhHHHHHHHHHHHhhcCCCHHHH
Q 045024 312 SIVSWKTTCLMAAISSKSSYQRALYLAPW-QANIYTDIAITSDLIYSLNEAYGHYQSAWHVSEKMALGALLLEGDNCQFW 390 (1173)
Q Consensus 312 ~~~~~~~~~~~~~~~A~~~~~~al~l~p~-~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~A~k~~~~al~~~p~~~~~~ 390 (1173)
...+.+.+|+..|..+....+. +..+|+.+|.+|..+|.+++| +..|.+++...|++.++.
T Consensus 425 -------~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A-----------~e~y~kvl~~~p~~~D~R 486 (895)
T KOG2076|consen 425 -------TNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEA-----------IEFYEKVLILAPDNLDAR 486 (895)
T ss_pred -------HhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHH-----------HHHHHHHHhcCCCchhhh
Confidence 2234477899999999887664 467899999999999999988 556889999999999999
Q ss_pred HHHHHhhcccHHHH---HHHHHHHhcCCC---------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-------hCCC-
Q 045024 391 VTLGCLSNYNGLKQ---HALIRGLQLDVS---------LADAWAHIGKLYGEVGEKKLARQAFDSARS-------IDPS- 450 (1173)
Q Consensus 391 ~~Lg~~~~~~~~a~---~a~~kal~l~p~---------~~~a~~~Lg~~y~~~g~~e~A~~~f~~al~-------~~P~- 450 (1173)
..|+.++...|.-. +.+.....-++. +..+.....+++.+.|+.++=+..-...+. ..|+
T Consensus 487 i~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~ 566 (895)
T KOG2076|consen 487 ITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFINTASTLVDDFLKKRYIFPRN 566 (895)
T ss_pred hhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchH
Confidence 99999988555444 444443323322 234567788888888887763322211111 0010
Q ss_pred ------------------------------------------------------ChhHHHHh---HHHHHHhcCCHHHHH
Q 045024 451 ------------------------------------------------------LALPWAGM---SADVQASESLVDDAF 473 (1173)
Q Consensus 451 ------------------------------------------------------~~~a~~~l---~a~~~~~~g~~~eA~ 473 (1173)
..+.|+.+ ...++.+.+++++|.
T Consensus 567 ~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl 646 (895)
T KOG2076|consen 567 KKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDWFELFRELILSLAKLQRVQEAL 646 (895)
T ss_pred HHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 11223321 244566888999999
Q ss_pred HHHHHHHhcCC---chHH--HHHHHHHHHHhCCCChHHHHHHHHHHHHh-------------------------------
Q 045024 474 ESCLRAVQILP---LAEF--QIGLAKLAKLSGHLSSSQVFGAIQQAIQR------------------------------- 517 (1173)
Q Consensus 474 ~~~~~al~~~p---~~~~--~~~la~l~~~~g~~~~~~A~~~l~~al~~------------------------------- 517 (1173)
.+...+++..- .++. -+....+.+.....+..+|...++-++..
T Consensus 647 ~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R 726 (895)
T KOG2076|consen 647 SVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQLNLWNLDFSYFSKYGQRVCYLR 726 (895)
T ss_pred HHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888777522 1111 11111111111111233444444444333
Q ss_pred --------CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHHHhcCC--------
Q 045024 518 --------GPHY-PESHNLYGLVCEARSDYQAAVVSYRLARYAISSSSGTVPNSHFQDISINLARSLSRAGN-------- 580 (1173)
Q Consensus 518 --------~P~~-~~a~~~lg~i~~~~g~~~~A~~~~~kAl~l~~~~pe~~~~~~~~~~~~~La~~~~~~g~-------- 580 (1173)
+|++ +......|......+.+..|+..|-++ ....|++|. ......++-+...+++
T Consensus 727 ~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra---~~~~pd~Pl----~nl~lglafih~a~qr~v~~Rh~~ 799 (895)
T KOG2076|consen 727 LIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRA---FRQNPDSPL----INLCLGLAFIHLALQRRVSNRHAQ 799 (895)
T ss_pred HHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHH---HHhCCCCcH----HHHHHHHHHHHHHHHHHHhhhHHH
Confidence 3333 333344566677788999999999988 455676554 1222333333333332
Q ss_pred HHHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHcCChHHHHHHHHHHhhhccccc-------cchhhhhHHHHHHHHHHh
Q 045024 581 ALDAVRECESLERQGM--LDAEVLQVYAFSLWQLGKYDLALSMARNLASSVSAME-------QSSAAASVSFICRLLYHI 651 (1173)
Q Consensus 581 ~~eAi~~~~~~~~~~p--~~~~~~~~la~a~~~~g~~~eA~~~~~~aL~~~p~~~-------~~~~~~~~~~la~l~~~~ 651 (1173)
.-+++..+.+..+... +..++.+++|++|...|-..-|+.+|+++|+..|..- -+-.-.+.+.+.-||-..
T Consensus 800 i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~~YYekvL~~~p~~~~~~~~d~~dLrkeAA~NL~LIY~~S 879 (895)
T KOG2076|consen 800 IAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAVSYYEKVLEVSPKDVTDPKEDNYDLRKEAAYNLHLIYKKS 879 (895)
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhCCCccccccccCCcccHHHHHHhhhhhhhccC
Confidence 4567777766655433 3577999999999999999999999999999764321 112235566777778888
Q ss_pred cChhhhhHHhhhC
Q 045024 652 SGLDSTINSILKM 664 (1173)
Q Consensus 652 g~~~~A~~~l~~~ 664 (1173)
|....|..++.++
T Consensus 880 Gn~~lArqil~ky 892 (895)
T KOG2076|consen 880 GNMQLARQILEKY 892 (895)
T ss_pred CcHHHHHHHHHhh
Confidence 8888888777654
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.3e-20 Score=232.00 Aligned_cols=471 Identities=10% Similarity=-0.070 Sum_probs=335.8
Q ss_pred HHHhCCCCHHHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHH
Q 045024 14 SLEANPDDPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSV 93 (1173)
Q Consensus 14 al~~~P~~~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~ 93 (1173)
..-..|+.+...+..+.+.++.|+ ++.|+..|+++++.+|.++.+...+..++.. .|+.++|+.++++++.-.|....
T Consensus 26 ~~~~~p~~~~~~y~~aii~~r~Gd-~~~Al~~L~qaL~~~P~~~~av~dll~l~~~-~G~~~~A~~~~eka~~p~n~~~~ 103 (822)
T PRK14574 26 GFVVNPAMADTQYDSLIIRARAGD-TAPVLDYLQEESKAGPLQSGQVDDWLQIAGW-AGRDQEVIDVYERYQSSMNISSR 103 (822)
T ss_pred ccccCccchhHHHHHHHHHHhCCC-HHHHHHHHHHHHhhCccchhhHHHHHHHHHH-cCCcHHHHHHHHHhccCCCCCHH
Confidence 344688999999999999999998 9999999999999999997555589999999 99999999999999944445555
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 045024 94 SGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRL 173 (1173)
Q Consensus 94 a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~ 173 (1173)
....+|.++...|++++|++.|+++++.+|+++.++..++..+...++.++|+..++++...+|.+... ..++.++...
T Consensus 104 ~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~-l~layL~~~~ 182 (822)
T PRK14574 104 GLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNY-MTLSYLNRAT 182 (822)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH-HHHHHHHHhc
Confidence 566668899999999999999999999999999999999999999999999999999999999986654 5667777668
Q ss_pred CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCHHHHHHH--HHHHHHHHHHHHHhhcH
Q 045024 174 GMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGL--ASGLLGLAKQCINLGAF 251 (1173)
Q Consensus 174 g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l--a~~~~~l~~~~~a~g~~ 251 (1173)
++..+|++.++++++.+|++..++..+..++...|-...|.+...+--.........+... +.-.++.+... ....
T Consensus 183 ~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~--~~~~ 260 (822)
T PRK14574 183 DRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLP--TRSE 260 (822)
T ss_pred chHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccc--cccc
Confidence 8887899999999999999999999999999999999999876665322111111111111 11111111100 0001
Q ss_pred HHHHHHHHHHHHHHHHHhhhc---CChHHH-HHHhchHHHHHhhccchhhhhhchhhhhhhhhhhhHhhHhhhhHHHHHH
Q 045024 252 RWGASLLEDACKVAEANTRLA---GNMSCI-WKLHGDIQLTYAKCFPWAEERQSLEFDVETFSASIVSWKTTCLMAAISS 327 (1173)
Q Consensus 252 ~~A~~~l~~Al~~~~~~~~~~---~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~A 327 (1173)
.+.....+.++..+....... |..... .....|... .....+.+.++
T Consensus 261 ~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~-----------------------------aL~~r~r~~~v 311 (822)
T PRK14574 261 TERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLG-----------------------------ALLVRHQTADL 311 (822)
T ss_pred hhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHH-----------------------------HHHHhhhHHHH
Confidence 112223444444444433211 111011 111111111 11223456788
Q ss_pred HHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHhhhhhhhhhHHHHHHHHHHHhhcCCCHHHHHHHHHhhcccHHHHHH
Q 045024 328 KSSYQRALYLA-PWQANIYTDIAITSDLIYSLNEAYGHYQSAWHVSEKMALGALLLEGDNCQFWVTLGCLSNYNGLKQHA 406 (1173)
Q Consensus 328 ~~~~~~al~l~-p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~A~k~~~~al~~~p~~~~~~~~Lg~~~~~~~~a~~a 406 (1173)
+..|+..-... |--..+....|..|...++.++|... +..++...|..
T Consensus 312 i~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l-----------~~~~~~~~~~~-------------------- 360 (822)
T PRK14574 312 IKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPI-----------LSSLYYSDGKT-------------------- 360 (822)
T ss_pred HHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHH-----------HHHHhhccccc--------------------
Confidence 89998877544 33445777888888888888777332 33333322210
Q ss_pred HHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC---------------CChhHHHHhHHHHHHhcCCHHH
Q 045024 407 LIRGLQLDVSLADAWAHIGKLYGEVGEKKLARQAFDSARSIDP---------------SLALPWAGMSADVQASESLVDD 471 (1173)
Q Consensus 407 ~~kal~l~p~~~~a~~~Lg~~y~~~g~~e~A~~~f~~al~~~P---------------~~~~a~~~l~a~~~~~~g~~~e 471 (1173)
...|.+......|-..|...+++++|..++++..+..| +....... .+.++...|+..+
T Consensus 361 -----~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l-~a~~~~~~gdl~~ 434 (822)
T PRK14574 361 -----FRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTL-LVQSLVALNDLPT 434 (822)
T ss_pred -----cCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHH-HHHHHHHcCCHHH
Confidence 00123444456788888999999999999999887544 11222222 4556777888888
Q ss_pred HHHHHHHHHhcCC-chHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 045024 472 AFESCLRAVQILP-LAEFQIGLAKLAKLSGHLSSSQVFGAIQQAIQRGPHYPESHNLYGLVCEARSDYQAAVVSYRLARY 550 (1173)
Q Consensus 472 A~~~~~~al~~~p-~~~~~~~la~l~~~~g~~~~~~A~~~l~~al~~~P~~~~a~~~lg~i~~~~g~~~~A~~~~~kAl~ 550 (1173)
|.+.+++.+...| ++.....++.+....|. +.+|...++.+...+|++..+...+|..+...|++++|....++++
T Consensus 435 Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~--p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~- 511 (822)
T PRK14574 435 AQKKLEDLSSTAPANQNLRIALASIYLARDL--PRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVI- 511 (822)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHH-
Confidence 8888888888888 55777777777777776 5688888888888899999999999999999999999999888774
Q ss_pred HhhcCCCCCC
Q 045024 551 AISSSSGTVP 560 (1173)
Q Consensus 551 l~~~~pe~~~ 560 (1173)
+..|++..
T Consensus 512 --~~~Pe~~~ 519 (822)
T PRK14574 512 --SRSPEDIP 519 (822)
T ss_pred --hhCCCchh
Confidence 55565443
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.8e-18 Score=194.77 Aligned_cols=540 Identities=12% Similarity=0.047 Sum_probs=317.1
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 045024 7 LLLQLEDSLEANPDDPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVS 86 (1173)
Q Consensus 7 Ai~~l~~al~~~P~~~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~ 86 (1173)
|.....++++..|.++..|+.-+..-.. ...=...+.++++..|++...|- .... ..+.+.|...+.+|++
T Consensus 334 aK~vvA~Avr~~P~Sv~lW~kA~dLE~~----~~~K~RVlRKALe~iP~sv~LWK----aAVe-lE~~~darilL~rAve 404 (913)
T KOG0495|consen 334 AKTVVANAVRFLPTSVRLWLKAADLESD----TKNKKRVLRKALEHIPRSVRLWK----AAVE-LEEPEDARILLERAVE 404 (913)
T ss_pred HHHHHHHHHHhCCCChhhhhhHHhhhhH----HHHHHHHHHHHHHhCCchHHHHH----HHHh-ccChHHHHHHHHHHHH
Confidence 4556677888888888888776654322 34455678888888888776663 2334 5556668888888888
Q ss_pred hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----CCHH
Q 045024 87 LSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYP-----TSPH 161 (1173)
Q Consensus 87 ~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p-----~~~~ 161 (1173)
..|.+.+.|..++++ .-|+.|...+.++-+.-|.++..|..-+.+-...|+.+...+++.+.+..-. -+-+
T Consensus 405 ccp~s~dLwlAlarL----etYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rd 480 (913)
T KOG0495|consen 405 CCPQSMDLWLALARL----ETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRD 480 (913)
T ss_pred hccchHHHHHHHHHH----HHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHH
Confidence 888888887777665 3577788888888888888888888888888888888888777777664321 2345
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---CChHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCHHHHHHHHHHH
Q 045024 162 LWEALGLAYHRLGMFSAAIKSYGRAIELDD---TSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLASGL 238 (1173)
Q Consensus 162 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p---~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~ 238 (1173)
.|..-+......|..--+......++.+.- +.-..|..-+..+.+.+-++-|+..|..+++..|.....|...+..-
T Consensus 481 qWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~e 560 (913)
T KOG0495|consen 481 QWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFE 560 (913)
T ss_pred HHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHH
Confidence 556566666656655555555555555432 23445566666666666666666666666666666665555444443
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHHHHHHHHHhhhcCChHHHHHHhchHHHHHhhccchhhhhhchhhhhhhhhhhhHhhHh
Q 045024 239 LGLAKQCINLGAFRWGASLLEDACKVAEANTRLAGNMSCIWKLHGDIQLTYAKCFPWAEERQSLEFDVETFSASIVSWKT 318 (1173)
Q Consensus 239 ~~l~~~~~a~g~~~~A~~~l~~Al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 318 (1173)
...|. .+.-..++++|+...+ ....+|..........++
T Consensus 561 k~hgt-------~Esl~Allqkav~~~p-------kae~lwlM~ake~w~agd--------------------------- 599 (913)
T KOG0495|consen 561 KSHGT-------RESLEALLQKAVEQCP-------KAEILWLMYAKEKWKAGD--------------------------- 599 (913)
T ss_pred HhcCc-------HHHHHHHHHHHHHhCC-------cchhHHHHHHHHHHhcCC---------------------------
Confidence 33333 2222223333333332 223333333333222111
Q ss_pred hhhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHhhhhhhhhhHHHHHHHHHHHhhcCCCHHHHH---HHHH
Q 045024 319 TCLMAAISSKSSYQRALYLAPWQANIYTDIAITSDLIYSLNEAYGHYQSAWHVSEKMALGALLLEGDNCQFWV---TLGC 395 (1173)
Q Consensus 319 ~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~A~k~~~~al~~~p~~~~~~~---~Lg~ 395 (1173)
...|...+.++++.+|++.++|+.-..+......++.|.. .+.++....|... .|. .+-+
T Consensus 600 -----v~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~-----------llakar~~sgTeR-v~mKs~~~er 662 (913)
T KOG0495|consen 600 -----VPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARD-----------LLAKARSISGTER-VWMKSANLER 662 (913)
T ss_pred -----cHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHH-----------HHHHHhccCCcch-hhHHHhHHHH
Confidence 2245556666666666666666666555555555555522 2333333333322 222 1223
Q ss_pred hhcccHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhHHHHhHHHHHHhcCCHHHHHHH
Q 045024 396 LSNYNGLKQHALIRGLQLDVSLADAWAHIGKLYGEVGEKKLARQAFDSARSIDPSLALPWAGMSADVQASESLVDDAFES 475 (1173)
Q Consensus 396 ~~~~~~~a~~a~~kal~l~p~~~~a~~~Lg~~y~~~g~~e~A~~~f~~al~~~P~~~~a~~~l~a~~~~~~g~~~eA~~~ 475 (1173)
+..+...+.+.++.+++..|+....|..+|+++.++++.+.|.+.|...++.-|..+..|+. ++.+-.+.|..-.|...
T Consensus 663 ~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWll-LakleEk~~~~~rAR~i 741 (913)
T KOG0495|consen 663 YLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLL-LAKLEEKDGQLVRARSI 741 (913)
T ss_pred HhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHH-HHHHHHHhcchhhHHHH
Confidence 33345555566666666666666666666666666666666666666666666666666665 45555556666666666
Q ss_pred HHHHHhcCCc-hHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhc
Q 045024 476 CLRAVQILPL-AEFQIGLAKLAKLSGHLSSSQVFGAIQQAIQRGPHYPESHNLYGLVCEARSDYQAAVVSYRLARYAISS 554 (1173)
Q Consensus 476 ~~~al~~~p~-~~~~~~la~l~~~~g~~~~~~A~~~l~~al~~~P~~~~a~~~lg~i~~~~g~~~~A~~~~~kAl~l~~~ 554 (1173)
++++.-.+|. ...++....+..+.|+ .++|.....++++..|++...|..-..+.-+-++-..++..+++. +.
T Consensus 742 ldrarlkNPk~~~lwle~Ir~ElR~gn--~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkc----e~ 815 (913)
T KOG0495|consen 742 LDRARLKNPKNALLWLESIRMELRAGN--KEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKC----EH 815 (913)
T ss_pred HHHHHhcCCCcchhHHHHHHHHHHcCC--HHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhc----cC
Confidence 6666666663 3444455555555555 345666666666666666666665555555555555555554443 22
Q ss_pred CCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHhhhccccc
Q 045024 555 SSGTVPNSHFQDISINLARSLSRAGNALDAVRECESLERQGMLDAEVLQVYAFSLWQLGKYDLALSMARNLASSVSAME 633 (1173)
Q Consensus 555 ~pe~~~~~~~~~~~~~La~~~~~~g~~~eAi~~~~~~~~~~p~~~~~~~~la~a~~~~g~~~eA~~~~~~aL~~~p~~~ 633 (1173)
+| . ++...|.++....+++.|.+.|+++++.+|+..++|...=..+...|.-++-.++|.+...-.|.++
T Consensus 816 dp---h------Vllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~EP~hG 885 (913)
T KOG0495|consen 816 DP---H------VLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAEPTHG 885 (913)
T ss_pred Cc---h------hHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCC
Confidence 11 1 4556666666666666666666666666666666665555555666666666666666555555443
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=9.8e-20 Score=230.60 Aligned_cols=457 Identities=14% Similarity=0.010 Sum_probs=349.2
Q ss_pred HHHHHHHHHHHccCcHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhC-CCCHHHHHHHHH
Q 045024 24 LHLDLGLHLWENSESKEKAAEHFVIAAKLNP--QNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLS-PDDSVSGEALCE 100 (1173)
Q Consensus 24 ~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p--~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~-p~~~~a~~~La~ 100 (1173)
.|..+...+...|+ +++|+..|+.+....+ -+...+..+...+.. .++++.|...+..+.+.. ..+..++..+..
T Consensus 89 ~~~~~i~~l~~~g~-~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~-~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~ 166 (697)
T PLN03081 89 SLCSQIEKLVACGR-HREALELFEILEAGCPFTLPASTYDALVEACIA-LKSIRCVKAVYWHVESSGFEPDQYMMNRVLL 166 (697)
T ss_pred eHHHHHHHHHcCCC-HHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHhCCCcchHHHHHHHH
Confidence 45555566666666 9999999998876543 356788888888999 999999999998887643 224677888999
Q ss_pred HHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHH
Q 045024 101 LLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYP-TSPHLWEALGLAYHRLGMFSAA 179 (1173)
Q Consensus 101 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p-~~~~~~~~la~~~~~~g~~~~A 179 (1173)
.|.+.|++++|...|+++.+ .+..+|..+...|.+.|++++|+..|+++.+..+ .+...+..+...+...|+.+.+
T Consensus 167 ~y~k~g~~~~A~~lf~~m~~---~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~ 243 (697)
T PLN03081 167 MHVKCGMLIDARRLFDEMPE---RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAG 243 (697)
T ss_pred HHhcCCCHHHHHHHHhcCCC---CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHH
Confidence 99999999999999998754 3567788999999999999999999999987644 3456777788888889999999
Q ss_pred HHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHH
Q 045024 180 IKSYGRAIELD-DTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLASGLLGLAKQCINLGAFRWGASLL 258 (1173)
Q Consensus 180 ~~~~~~al~~~-p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~l~~~~~a~g~~~~A~~~l 258 (1173)
.+.+..+++.. ..+..++..+...|.+.|++++|...|+++. +.+...|..+...|...|+ +
T Consensus 244 ~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~---~~~~vt~n~li~~y~~~g~-------~------- 306 (697)
T PLN03081 244 QQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP---EKTTVAWNSMLAGYALHGY-------S------- 306 (697)
T ss_pred HHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC---CCChhHHHHHHHHHHhCCC-------H-------
Confidence 99888887764 2356778888999999999999999998763 4466677777777776655 3
Q ss_pred HHHHHHHHHHhhhcCChHHHHHHhchHHHHHhhccchhhhhhchhhhhhhhhhhhHhhHhhhhHHHHHHHHHHHHHHh--
Q 045024 259 EDACKVAEANTRLAGNMSCIWKLHGDIQLTYAKCFPWAEERQSLEFDVETFSASIVSWKTTCLMAAISSKSSYQRALY-- 336 (1173)
Q Consensus 259 ~~Al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~-- 336 (1173)
++|++. |++..+
T Consensus 307 ~eA~~l------------------------------------------------------------------f~~M~~~g 320 (697)
T PLN03081 307 EEALCL------------------------------------------------------------------YYEMRDSG 320 (697)
T ss_pred HHHHHH------------------------------------------------------------------HHHHHHcC
Confidence 333332 222221
Q ss_pred cCCCCHHHHHHHHHHHHHHhhHHHhhhhhhhhhHHHHHHHHHHHhhcCCCHHHHHHHHHhhcccHHHHHHHHHHHhcC-C
Q 045024 337 LAPWQANIYTDIAITSDLIYSLNEAYGHYQSAWHVSEKMALGALLLEGDNCQFWVTLGCLSNYNGLKQHALIRGLQLD-V 415 (1173)
Q Consensus 337 l~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~A~k~~~~al~~~p~~~~~~~~Lg~~~~~~~~a~~a~~kal~l~-p 415 (1173)
..| +...+..+..++...|.++++.. .+..+++.. +
T Consensus 321 ~~p-d~~t~~~ll~a~~~~g~~~~a~~------------------------------------------i~~~m~~~g~~ 357 (697)
T PLN03081 321 VSI-DQFTFSIMIRIFSRLALLEHAKQ------------------------------------------AHAGLIRTGFP 357 (697)
T ss_pred CCC-CHHHHHHHHHHHHhccchHHHHH------------------------------------------HHHHHHHhCCC
Confidence 123 44567777777777777776622 233333222 3
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhHHHHhHHHHHHhcCCHHHHHHHHHHHHhcC--CchHHHHHHH
Q 045024 416 SLADAWAHIGKLYGEVGEKKLARQAFDSARSIDPSLALPWAGMSADVQASESLVDDAFESCLRAVQIL--PLAEFQIGLA 493 (1173)
Q Consensus 416 ~~~~a~~~Lg~~y~~~g~~e~A~~~f~~al~~~P~~~~a~~~l~a~~~~~~g~~~eA~~~~~~al~~~--p~~~~~~~la 493 (1173)
.+..++..+...|.+.|++++|.+.|++..+ | +..+|.. ++..|.+.|+.++|+++|+++.+.. |+...+..+.
T Consensus 358 ~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~--~-d~~t~n~-lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll 433 (697)
T PLN03081 358 LDIVANTALVDLYSKWGRMEDARNVFDRMPR--K-NLISWNA-LIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVL 433 (697)
T ss_pred CCeeehHHHHHHHHHCCCHHHHHHHHHhCCC--C-CeeeHHH-HHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 4677889999999999999999999998754 3 4567887 4558999999999999999988764 4444444444
Q ss_pred HHHHHhCCCChHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCCCCCCCchHHHHHHH
Q 045024 494 KLAKLSGHLSSSQVFGAIQQAIQRGPH--YPESHNLYGLVCEARSDYQAAVVSYRLARYAISSSSGTVPNSHFQDISINL 571 (1173)
Q Consensus 494 ~l~~~~g~~~~~~A~~~l~~al~~~P~--~~~a~~~lg~i~~~~g~~~~A~~~~~kAl~l~~~~pe~~~~~~~~~~~~~L 571 (1173)
......|. .++|...|+.+.+..+- +...|..+..++.+.|++++|.+.++++ ...| ...+|..+
T Consensus 434 ~a~~~~g~--~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~----~~~p-------~~~~~~~L 500 (697)
T PLN03081 434 SACRYSGL--SEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA----PFKP-------TVNMWAAL 500 (697)
T ss_pred HHHhcCCc--HHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC----CCCC-------CHHHHHHH
Confidence 44455555 67899999998875433 4567889999999999999999998754 1112 13478899
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHhhh
Q 045024 572 ARSLSRAGNALDAVRECESLERQGMLDAEVLQVYAFSLWQLGKYDLALSMARNLASS 628 (1173)
Q Consensus 572 a~~~~~~g~~~eAi~~~~~~~~~~p~~~~~~~~la~a~~~~g~~~eA~~~~~~aL~~ 628 (1173)
...+...|+++.|...++++.+.+|.+...+..++.+|.+.|++++|.++++.+.+.
T Consensus 501 l~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~ 557 (697)
T PLN03081 501 LTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRK 557 (697)
T ss_pred HHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 999999999999999999999999999889999999999999999999999988763
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.4e-20 Score=202.14 Aligned_cols=370 Identities=14% Similarity=0.095 Sum_probs=275.8
Q ss_pred CCHHHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCC--CCHHHHHH
Q 045024 20 DDPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSP--DDSVSGEA 97 (1173)
Q Consensus 20 ~~~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p--~~~~a~~~ 97 (1173)
.|+-.++..|.++.+.+. ...|+..|..++...|-+-.+|..++.+... ++.....+..-| .+...-+.
T Consensus 162 ~D~fllYL~Gvv~k~~~~-~s~A~~sfv~~v~~~P~~W~AWleL~~lit~--------~e~~~~l~~~l~~~~h~M~~~F 232 (559)
T KOG1155|consen 162 KDEFLLYLYGVVLKELGL-LSLAIDSFVEVVNRYPWFWSAWLELSELITD--------IEILSILVVGLPSDMHWMKKFF 232 (559)
T ss_pred chhHHHHHHHHHHHhhch-HHHHHHHHHHHHhcCCcchHHHHHHHHhhch--------HHHHHHHHhcCcccchHHHHHH
Confidence 356667777887777776 6778888888877778877788777766555 222233332334 33334555
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHhh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Q 045024 98 LCELLEHGGKESLEVVVCREASDK-SPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMF 176 (1173)
Q Consensus 98 La~~~~~~g~~~~A~~~~~~al~~-~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~ 176 (1173)
++.++......++++.-++..... .|.+...-...|.+...+.|+++|+..|+...+.+|-..+-.-...++++-.++-
T Consensus 233 ~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~ 312 (559)
T KOG1155|consen 233 LKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDK 312 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhh
Confidence 666776667777888877777777 6777777777788888888888888888888888886655555555665555554
Q ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhhcHHHHHH
Q 045024 177 SAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLASGLLGLAKQCINLGAFRWGAS 256 (1173)
Q Consensus 177 ~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~l~~~~~a~g~~~~A~~ 256 (1173)
.+-.-.-+.+..++.-.++..--+|+.|...++.++|+.+|+++++++|....+|..+|.-|+.+.+
T Consensus 313 skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKN------------- 379 (559)
T KOG1155|consen 313 SKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKN------------- 379 (559)
T ss_pred HHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcc-------------
Confidence 4444445556666666677777788888888888888888888888888888888777777766544
Q ss_pred HHHHHHHHHHHHhhhcCChHHHHHHhchHHHHHhhccchhhhhhchhhhhhhhhhhhHhhHhhhhHHHHHHHHHHHHHHh
Q 045024 257 LLEDACKVAEANTRLAGNMSCIWKLHGDIQLTYAKCFPWAEERQSLEFDVETFSASIVSWKTTCLMAAISSKSSYQRALY 336 (1173)
Q Consensus 257 ~l~~Al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 336 (1173)
...|+..|++|++
T Consensus 380 -------------------------------------------------------------------t~AAi~sYRrAvd 392 (559)
T KOG1155|consen 380 -------------------------------------------------------------------THAAIESYRRAVD 392 (559)
T ss_pred -------------------------------------------------------------------cHHHHHHHHHHHh
Confidence 2358888999999
Q ss_pred cCCCCHHHHHHHHHHHHHHhhHHHhhhhhhhhhHHHHHHHHHHHhhcCCCHHHHHHHHHhhcccHHHHHHHHHHHhcCCC
Q 045024 337 LAPWQANIYTDIAITSDLIYSLNEAYGHYQSAWHVSEKMALGALLLEGDNCQFWVTLGCLSNYNGLKQHALIRGLQLDVS 416 (1173)
Q Consensus 337 l~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~A~k~~~~al~~~p~~~~~~~~Lg~~~~~~~~a~~a~~kal~l~p~ 416 (1173)
++|.|..+|+.+|.+|..++...=| ...|++|++..|+
T Consensus 393 i~p~DyRAWYGLGQaYeim~Mh~Ya------------------------------------------LyYfqkA~~~kPn 430 (559)
T KOG1155|consen 393 INPRDYRAWYGLGQAYEIMKMHFYA------------------------------------------LYYFQKALELKPN 430 (559)
T ss_pred cCchhHHHHhhhhHHHHHhcchHHH------------------------------------------HHHHHHHHhcCCC
Confidence 9999999999999988765544322 3478999999999
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhHHHHhHHHHHHhcCCHHHHHHHHHHHHhcCCchHHHHHHHHHH
Q 045024 417 LADAWAHIGKLYGEVGEKKLARQAFDSARSIDPSLALPWAGMSADVQASESLVDDAFESCLRAVQILPLAEFQIGLAKLA 496 (1173)
Q Consensus 417 ~~~a~~~Lg~~y~~~g~~e~A~~~f~~al~~~P~~~~a~~~l~a~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~la~l~ 496 (1173)
++..|..||.+|.+.++.++|+.+|.+++.....+..++.. +|.+|.+.++..+|...|++.++...
T Consensus 431 DsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~-LakLye~l~d~~eAa~~yek~v~~~~------------ 497 (559)
T KOG1155|consen 431 DSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVR-LAKLYEELKDLNEAAQYYEKYVEVSE------------ 497 (559)
T ss_pred chHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHH-HHHHHHHHHhHHHHHHHHHHHHHHHH------------
Confidence 99999999999999999999999999999998877788888 88899999999999999998876420
Q ss_pred HHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 045024 497 KLSGHLSSSQVFGAIQQAIQRGPHYPESHNLYGLVCEARSDYQAAVVSYRLAR 549 (1173)
Q Consensus 497 ~~~g~~~~~~A~~~l~~al~~~P~~~~a~~~lg~i~~~~g~~~~A~~~~~kAl 549 (1173)
..| ...|+...+...|+.-+.+.+++++|..+-.+++
T Consensus 498 -~eg---------------~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~ 534 (559)
T KOG1155|consen 498 -LEG---------------EIDDETIKARLFLAEYFKKMKDFDEASYYATLVL 534 (559)
T ss_pred -hhc---------------ccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHh
Confidence 011 1124445566778888999999999988877663
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.2e-21 Score=223.81 Aligned_cols=308 Identities=20% Similarity=0.179 Sum_probs=247.7
Q ss_pred HHHHHHHHHHHHccC-cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 045024 23 SLHLDLGLHLWENSE-SKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCEL 101 (1173)
Q Consensus 23 ~~~~~lg~~~~~~~~-~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~~ 101 (1173)
..+..+|..|..... +..+|+..|.+.-...++...++..+|..|+. +++|++|.++|+.+-+..|-..+..-.+..+
T Consensus 318 ~llr~~~~~~~~~s~y~~~~A~~~~~klp~h~~nt~wvl~q~GrayFE-l~~Y~~a~~~F~~~r~~~p~rv~~meiyST~ 396 (638)
T KOG1126|consen 318 ELLRGLGEGYRSLSQYNCREALNLFEKLPSHHYNTGWVLSQLGRAYFE-LIEYDQAERIFSLVRRIEPYRVKGMEIYSTT 396 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhcCCchHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhccccccchhHHHHH
Confidence 345555555543332 25889999998657777778888899999999 9999999999999999888777766666777
Q ss_pred HHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 045024 102 LEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIK 181 (1173)
Q Consensus 102 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 181 (1173)
+....+--+--...+..+..+|+.|++|..+|.+|-.+++++.|++.|+++++++|+...++..+|.-+.....+|.|..
T Consensus 397 LWHLq~~v~Ls~Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~ 476 (638)
T KOG1126|consen 397 LWHLQDEVALSYLAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMK 476 (638)
T ss_pred HHHHHhhHHHHHHHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHH
Confidence 76666655555566777888899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHH
Q 045024 182 SYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLASGLLGLAKQCINLGAFRWGASLLEDA 261 (1173)
Q Consensus 182 ~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~l~~~~~a~g~~~~A~~~l~~A 261 (1173)
+|+.++..+|.+..+|+.+|.+|.++++++.|.-.|++|++++|.+......+|.++.++|+
T Consensus 477 ~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~------------------ 538 (638)
T KOG1126|consen 477 SFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKR------------------ 538 (638)
T ss_pred HHHhhhcCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhh------------------
Confidence 99999999999999999999999999999999999999999999888776666666665554
Q ss_pred HHHHHHHhhhcCChHHHHHHhchHHHHHhhccchhhhhhchhhhhhhhhhhhHhhHhhhhHHHHHHHHHHHHHHhcCCCC
Q 045024 262 CKVAEANTRLAGNMSCIWKLHGDIQLTYAKCFPWAEERQSLEFDVETFSASIVSWKTTCLMAAISSKSSYQRALYLAPWQ 341 (1173)
Q Consensus 262 l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~ 341 (1173)
.++|+..|++|+.++|.+
T Consensus 539 --------------------------------------------------------------~d~AL~~~~~A~~ld~kn 556 (638)
T KOG1126|consen 539 --------------------------------------------------------------KDKALQLYEKAIHLDPKN 556 (638)
T ss_pred --------------------------------------------------------------hhHHHHHHHHHHhcCCCC
Confidence 346777788888888888
Q ss_pred HHHHHHHHHHHHHHhhHHHhhhhhhhhhHHHHHHHHHHHhhcCCCHHHHHHHHHhhcccHHHHHHHHHHHhcCCCcHHHH
Q 045024 342 ANIYTDIAITSDLIYSLNEAYGHYQSAWHVSEKMALGALLLEGDNCQFWVTLGCLSNYNGLKQHALIRGLQLDVSLADAW 421 (1173)
Q Consensus 342 ~~~~~~la~~~~~~g~~~eA~~~~~~~~~~A~k~~~~al~~~p~~~~~~~~Lg~~~~~~~~a~~a~~kal~l~p~~~~a~ 421 (1173)
+-..+..+.++...+++++|.. .+++..++-|++..++
T Consensus 557 ~l~~~~~~~il~~~~~~~eal~------------------------------------------~LEeLk~~vP~es~v~ 594 (638)
T KOG1126|consen 557 PLCKYHRASILFSLGRYVEALQ------------------------------------------ELEELKELVPQESSVF 594 (638)
T ss_pred chhHHHHHHHHHhhcchHHHHH------------------------------------------HHHHHHHhCcchHHHH
Confidence 8888888888887777777733 3445555667788888
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCChh
Q 045024 422 AHIGKLYGEVGEKKLARQAFDSARSIDPSLAL 453 (1173)
Q Consensus 422 ~~Lg~~y~~~g~~e~A~~~f~~al~~~P~~~~ 453 (1173)
+.+|.+|.+.|+.+.|+..|.-|..++|.-..
T Consensus 595 ~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 595 ALLGKIYKRLGNTDLALLHFSWALDLDPKGAQ 626 (638)
T ss_pred HHHHHHHHHHccchHHHHhhHHHhcCCCccch
Confidence 88888888888888888888888888887544
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.3e-19 Score=202.60 Aligned_cols=489 Identities=16% Similarity=0.108 Sum_probs=326.9
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCH
Q 045024 63 LGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKW 142 (1173)
Q Consensus 63 lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~ 142 (1173)
+-+-+.. +.+|.-|+-.-+++..+. .++.-.+.+|+++.-.|++..|......- .+...+....+..+.++....+|
T Consensus 22 ~~r~~l~-q~~y~~a~f~adkV~~l~-~dp~d~~~~aq~l~~~~~y~ra~~lit~~-~le~~d~~cryL~~~~l~~lk~~ 98 (611)
T KOG1173|consen 22 LVRDALM-QHRYKTALFWADKVAGLT-NDPADIYWLAQVLYLGRQYERAAHLITTY-KLEKRDIACRYLAAKCLVKLKEW 98 (611)
T ss_pred HHHHHHH-HHhhhHHHHHHHHHHhcc-CChHHHHHHHHHHHhhhHHHHHHHHHHHh-hhhhhhHHHHHHHHHHHHHHHHH
Confidence 3334445 577777777777777666 66666777888888888777776665544 44555677777778888888888
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHH--HHHHHHcCCHHHHHHHHHHHHHhCCC--ChHHHHHHHHHHHHcCChHHHHHHHH
Q 045024 143 SEAVQSLQHAIRGYPTSPHLWEAL--GLAYHRLGMFSAAIKSYGRAIELDDT--SIFPLLESGNIFLMLGNFRKGVEQFQ 218 (1173)
Q Consensus 143 ~~A~~~l~~al~~~p~~~~~~~~l--a~~~~~~g~~~~A~~~~~~al~~~p~--~~~a~~~la~~~~~~g~~~~A~~~~~ 218 (1173)
++|..++.+. ... .++-.+... +......+.. +..+. .....+..|.+|..+.+.++|...|.
T Consensus 99 ~~al~vl~~~-~~~-~~~f~yy~~~~~~~l~~n~~~-----------~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~ 165 (611)
T KOG1173|consen 99 DQALLVLGRG-HVE-TNPFSYYEKDAANTLELNSAG-----------EDLMINLESSICYLRGKVYVALDNREEARDKYK 165 (611)
T ss_pred HHHHHHhccc-chh-hcchhhcchhhhceeccCccc-----------ccccccchhceeeeeeehhhhhccHHHHHHHHH
Confidence 8887777644 110 001000000 1111111111 11111 23445678889999999999999999
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHHHHH-HHHhhcHHHHHHHHHHHHHHHHHHhhhcCChHHHHHHhchHHHHHhhccchhh
Q 045024 219 LALKISSENVSAHYGLASGLLGLAKQ-CINLGAFRWGASLLEDACKVAEANTRLAGNMSCIWKLHGDIQLTYAKCFPWAE 297 (1173)
Q Consensus 219 ~al~~~p~~~~a~~~la~~~~~l~~~-~~a~g~~~~A~~~l~~Al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 297 (1173)
+++..++.+.++...+....+..... ..-....+-+. ...+-.+..+...+ +.....+..
T Consensus 166 ~Al~~D~~c~Ea~~~lvs~~mlt~~Ee~~ll~~l~~a~-~~~ed~e~l~~lye------------------l~~~k~~n~ 226 (611)
T KOG1173|consen 166 EALLADAKCFEAFEKLVSAHMLTAQEEFELLESLDLAM-LTKEDVERLEILYE------------------LKLCKNRNE 226 (611)
T ss_pred HHHhcchhhHHHHHHHHHHHhcchhHHHHHHhcccHHh-hhhhHHHHHHHHHH------------------hhhhhhccc
Confidence 99999988888776665555443320 00000000000 00000000000000 000000000
Q ss_pred hhhchhhhhhhhhhhhHhhHhhhhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHhhhhhhhhhHHHHHHHH
Q 045024 298 ERQSLEFDVETFSASIVSWKTTCLMAAISSKSSYQRALYLAPWQANIYTDIAITSDLIYSLNEAYGHYQSAWHVSEKMAL 377 (1173)
Q Consensus 298 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~A~k~~~ 377 (1173)
.... ..=+..+..-.+++++....+..+...+++.+- .+...
T Consensus 227 ~~~~---------------------------r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c-----------~kit~ 268 (611)
T KOG1173|consen 227 ESLT---------------------------RNEDESLIGLAENLDLLAEKADRLYYGCRFKEC-----------LKITE 268 (611)
T ss_pred cccc---------------------------cCchhhhhhhhhcHHHHHHHHHHHHHcChHHHH-----------HHHhH
Confidence 0000 000011111133556666666666666666665 33345
Q ss_pred HHHhhcCCCHHHHHH-HHHhhcccHHHHHHHH---HHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChh
Q 045024 378 GALLLEGDNCQFWVT-LGCLSNYNGLKQHALI---RGLQLDVSLADAWAHIGKLYGEVGEKKLARQAFDSARSIDPSLAL 453 (1173)
Q Consensus 378 ~al~~~p~~~~~~~~-Lg~~~~~~~~a~~a~~---kal~l~p~~~~a~~~Lg~~y~~~g~~e~A~~~f~~al~~~P~~~~ 453 (1173)
..++.+|-+...+.. +| .+...+.....|. +.+...|+.+..|+.+|..|...|++.+|..+|.++..+||....
T Consensus 269 ~lle~dpfh~~~~~~~ia-~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgp 347 (611)
T KOG1173|consen 269 ELLEKDPFHLPCLPLHIA-CLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGP 347 (611)
T ss_pred HHHhhCCCCcchHHHHHH-HHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccH
Confidence 666677766544433 34 3344444444443 556789999999999999999999999999999999999999999
Q ss_pred HHHHhHHHHHHhcCCHHHHHHHHHHHHhcCCch-HHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 045024 454 PWAGMSADVQASESLVDDAFESCLRAVQILPLA-EFQIGLAKLAKLSGHLSSSQVFGAIQQAIQRGPHYPESHNLYGLVC 532 (1173)
Q Consensus 454 a~~~l~a~~~~~~g~~~eA~~~~~~al~~~p~~-~~~~~la~l~~~~g~~~~~~A~~~l~~al~~~P~~~~a~~~lg~i~ 532 (1173)
+|++ .|.++.-.|..++|+..|..|.++-|.. .-.+-++.-+.+.++ ..-|...|.+++.+.|++|.++..+|.+.
T Consensus 348 aWl~-fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n--~kLAe~Ff~~A~ai~P~Dplv~~Elgvva 424 (611)
T KOG1173|consen 348 AWLA-FGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNN--LKLAEKFFKQALAIAPSDPLVLHELGVVA 424 (611)
T ss_pred HHHH-HhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhcc--HHHHHHHHHHHHhcCCCcchhhhhhhhee
Confidence 9999 6779999999999999999999997732 122223333444555 35799999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc
Q 045024 533 EARSDYQAAVVSYRLARYAISSSSGTVPNSHFQDISINLARSLSRAGNALDAVRECESLERQGMLDAEVLQVYAFSLWQL 612 (1173)
Q Consensus 533 ~~~g~~~~A~~~~~kAl~l~~~~pe~~~~~~~~~~~~~La~~~~~~g~~~eAi~~~~~~~~~~p~~~~~~~~la~a~~~~ 612 (1173)
...+.|.+|..+|+.++..++...+ +.+.....+.+||.++.+.+++++||..|++++...|.+..++..+|.+|..+
T Consensus 425 y~~~~y~~A~~~f~~~l~~ik~~~~--e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~ll 502 (611)
T KOG1173|consen 425 YTYEEYPEALKYFQKALEVIKSVLN--EKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLL 502 (611)
T ss_pred ehHhhhHHHHHHHHHHHHHhhhccc--cccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHh
Confidence 9999999999999999855444321 23356778999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHhhhcc
Q 045024 613 GKYDLALSMARNLASSVS 630 (1173)
Q Consensus 613 g~~~eA~~~~~~aL~~~p 630 (1173)
|+++.|++.|.++|-..|
T Consensus 503 gnld~Aid~fhKaL~l~p 520 (611)
T KOG1173|consen 503 GNLDKAIDHFHKALALKP 520 (611)
T ss_pred cChHHHHHHHHHHHhcCC
Confidence 999999999999999777
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.5e-21 Score=222.96 Aligned_cols=290 Identities=19% Similarity=0.223 Sum_probs=256.3
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 045024 6 ALLLQLEDSLEANPDDPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAV 85 (1173)
Q Consensus 6 aAi~~l~~al~~~P~~~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al 85 (1173)
+|+..|++.-...++...+...+|..|++..+ |++|..+|+.+-+..|-..+..-....+++. ..+--+--..-+..+
T Consensus 337 ~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~-Y~~a~~~F~~~r~~~p~rv~~meiyST~LWH-Lq~~v~Ls~Laq~Li 414 (638)
T KOG1126|consen 337 EALNLFEKLPSHHYNTGWVLSQLGRAYFELIE-YDQAERIFSLVRRIEPYRVKGMEIYSTTLWH-LQDEVALSYLAQDLI 414 (638)
T ss_pred HHHHHHHhhHHhcCCchHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhccccccchhHHHHHHHH-HHhhHHHHHHHHHHH
Confidence 36899999767788888999999999999998 9999999999999999877666666677777 555444445556678
Q ss_pred hhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 045024 86 SLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEA 165 (1173)
Q Consensus 86 ~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~ 165 (1173)
+.+|+.++.|..+|.+|.-+++.+.|+++|+++++++|+...++..+|.-+....+++.|..+|+.++..+|.+..+|+.
T Consensus 415 ~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYG 494 (638)
T KOG1126|consen 415 DTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYG 494 (638)
T ss_pred hhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHh
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHH
Q 045024 166 LGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLASGLLGLAKQC 245 (1173)
Q Consensus 166 la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~l~~~~ 245 (1173)
+|.+|.++++++.|.-.|++|++++|.+......+|.++.+.|+.++|+..|++|+.++|.++-..+..+.++..+++
T Consensus 495 lG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~-- 572 (638)
T KOG1126|consen 495 LGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGR-- 572 (638)
T ss_pred hhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcc--
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred HHhhcHHHHHHHHHHHHHHHHHHhhhcCChHHHHHHhchHHHHHhhccchhhhhhchhhhhhhhhhhhHhhHhhhhHHHH
Q 045024 246 INLGAFRWGASLLEDACKVAEANTRLAGNMSCIWKLHGDIQLTYAKCFPWAEERQSLEFDVETFSASIVSWKTTCLMAAI 325 (1173)
Q Consensus 246 ~a~g~~~~A~~~l~~Al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 325 (1173)
+++|+..++......|..+.++..+|.++..++. .+
T Consensus 573 ------------~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~--------------------------------~~ 608 (638)
T KOG1126|consen 573 ------------YVEALQELEELKELVPQESSVFALLGKIYKRLGN--------------------------------TD 608 (638)
T ss_pred ------------hHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHcc--------------------------------ch
Confidence 6777777777778888888888888888877655 56
Q ss_pred HHHHHHHHHHhcCCCCHH
Q 045024 326 SSKSSYQRALYLAPWQAN 343 (1173)
Q Consensus 326 ~A~~~~~~al~l~p~~~~ 343 (1173)
.|+..|.-|..++|.-..
T Consensus 609 ~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 609 LALLHFSWALDLDPKGAQ 626 (638)
T ss_pred HHHHhhHHHhcCCCccch
Confidence 788889999999997544
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.88 E-value=3e-18 Score=187.10 Aligned_cols=372 Identities=15% Similarity=0.073 Sum_probs=252.1
Q ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHH
Q 045024 90 DDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYP--TSPHLWEALG 167 (1173)
Q Consensus 90 ~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p--~~~~~~~~la 167 (1173)
.++..++..|.++...|....|+..+..++...|-+-.+|..++.+... ++.....+..-| .+...-..++
T Consensus 162 ~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~-------~e~~~~l~~~l~~~~h~M~~~F~~ 234 (559)
T KOG1155|consen 162 KDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITD-------IEILSILVVGLPSDMHWMKKFFLK 234 (559)
T ss_pred chhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhch-------HHHHHHHHhcCcccchHHHHHHHH
Confidence 3445567777777777777788888777777777777777766665432 222333332233 2333445567
Q ss_pred HHHHHcCCHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHH
Q 045024 168 LAYHRLGMFSAAIKSYGRAIEL-DDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLASGLLGLAKQCI 246 (1173)
Q Consensus 168 ~~~~~~g~~~~A~~~~~~al~~-~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~l~~~~~ 246 (1173)
.++....+.++++.-++..... .|.+...-...|.+...+.++++|+..|+.+.+.+|-..+-.-....++.-..+
T Consensus 235 ~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~--- 311 (559)
T KOG1155|consen 235 KAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKND--- 311 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhh---
Confidence 7777777888888888877776 677777777778888888888888888888888777554433333333322211
Q ss_pred HhhcHHHHHHHHHHHHHHHHHHhhhcCChHHHHHHhchHHHHHhhccchhhhhhchhhhhhhhhhhhHhhHhhhhHHHHH
Q 045024 247 NLGAFRWGASLLEDACKVAEANTRLAGNMSCIWKLHGDIQLTYAKCFPWAEERQSLEFDVETFSASIVSWKTTCLMAAIS 326 (1173)
Q Consensus 247 a~g~~~~A~~~l~~Al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 326 (1173)
...+..+
T Consensus 312 ------------~skLs~L------------------------------------------------------------- 318 (559)
T KOG1155|consen 312 ------------KSKLSYL------------------------------------------------------------- 318 (559)
T ss_pred ------------hHHHHHH-------------------------------------------------------------
Confidence 0000000
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHhhhhhhhhhHHHHHHHHHHHhhcCCCHHHHHHHHHhhc---ccHHH
Q 045024 327 SKSSYQRALYLAPWQANIYTDIAITSDLIYSLNEAYGHYQSAWHVSEKMALGALLLEGDNCQFWVTLGCLSN---YNGLK 403 (1173)
Q Consensus 327 A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~A~k~~~~al~~~p~~~~~~~~Lg~~~~---~~~~a 403 (1173)
-+.+..++.-.++...-+|..|...++.++| +..++++++++|....+|..+|.-+. +...|
T Consensus 319 ----A~~v~~idKyR~ETCCiIaNYYSlr~eHEKA-----------v~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AA 383 (559)
T KOG1155|consen 319 ----AQNVSNIDKYRPETCCIIANYYSLRSEHEKA-----------VMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAA 383 (559)
T ss_pred ----HHHHHHhccCCccceeeehhHHHHHHhHHHH-----------HHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHH
Confidence 0112222222233333333333333333333 23334444444444444444443333 44566
Q ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhHHHHhHHHHHHhcCCHHHHHHHHHHHHhcC
Q 045024 404 QHALIRGLQLDVSLADAWAHIGKLYGEVGEKKLARQAFDSARSIDPSLALPWAGMSADVQASESLVDDAFESCLRAVQIL 483 (1173)
Q Consensus 404 ~~a~~kal~l~p~~~~a~~~Lg~~y~~~g~~e~A~~~f~~al~~~P~~~~a~~~l~a~~~~~~g~~~eA~~~~~~al~~~ 483 (1173)
+++|.+|++++|.+..+|+.||+.|.-++...=|+-+|++|+...|+++..|.. +|.+|.+.++.++|+..|.+++..+
T Consensus 384 i~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~a-LG~CY~kl~~~~eAiKCykrai~~~ 462 (559)
T KOG1155|consen 384 IESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVA-LGECYEKLNRLEEAIKCYKRAILLG 462 (559)
T ss_pred HHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHH-HHHHHHHhccHHHHHHHHHHHHhcc
Confidence 789999999999999999999999999999999999999999999999999999 7889999999999999998887654
Q ss_pred CchHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCCCCCCCc
Q 045024 484 PLAEFQIGLAKLAKLSGHLSSSQVFGAIQQAIQRGPHYPESHNLYGLVCEARSDYQAAVVSYRLARYAISSSSGTVPNSH 563 (1173)
Q Consensus 484 p~~~~~~~la~l~~~~g~~~~~~A~~~l~~al~~~P~~~~a~~~lg~i~~~~g~~~~A~~~~~kAl~l~~~~pe~~~~~~ 563 (1173)
. .+..++..+|.+|++.++..+|..+|++-++......+ ..+.
T Consensus 463 d-----------------------------------te~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~--~~~~ 505 (559)
T KOG1155|consen 463 D-----------------------------------TEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGE--IDDE 505 (559)
T ss_pred c-----------------------------------cchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcc--cchH
Confidence 2 35578899999999999999999999999875432221 1344
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 045024 564 FQDISINLARSLSRAGNALDAVRECESLERQGML 597 (1173)
Q Consensus 564 ~~~~~~~La~~~~~~g~~~eAi~~~~~~~~~~p~ 597 (1173)
...+..-|+.-+.+.+++++|-.+..++..-++.
T Consensus 506 t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~~~e 539 (559)
T KOG1155|consen 506 TIKARLFLAEYFKKMKDFDEASYYATLVLKGETE 539 (559)
T ss_pred HHHHHHHHHHHHHhhcchHHHHHHHHHHhcCCch
Confidence 5556677999999999999999888877654433
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=8.1e-20 Score=216.00 Aligned_cols=298 Identities=15% Similarity=0.087 Sum_probs=180.8
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc----HHHHHHHHH
Q 045024 59 AFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRA----FWAFRRLGY 134 (1173)
Q Consensus 59 a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~----~~a~~~la~ 134 (1173)
..+.+|..+.. .|++++|+..|+++++.+|++..++..+|.++...|++++|+..+++++...+.. ..++..+|.
T Consensus 37 ~~y~~g~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~ 115 (389)
T PRK11788 37 RDYFKGLNFLL-NEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQ 115 (389)
T ss_pred HHHHHHHHHHh-cCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Confidence 34445556666 6666666666666666666666666666666666666666666666665532221 234556666
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh-----HHHHHHHHHHHHcCC
Q 045024 135 LQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSI-----FPLLESGNIFLMLGN 209 (1173)
Q Consensus 135 ~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-----~a~~~la~~~~~~g~ 209 (1173)
++...|++++|+..|+++++.+|.+..++..++.++...|++++|++.++++++..|.+. ..+..+|.++...|+
T Consensus 116 ~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 195 (389)
T PRK11788 116 DYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGD 195 (389)
T ss_pred HHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCC
Confidence 666666666666666666666666666666666666666666666666666666555432 134456666666666
Q ss_pred hHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHhhhcCChHHHHHHhchHHHHH
Q 045024 210 FRKGVEQFQLALKISSENVSAHYGLASGLLGLAKQCINLGAFRWGASLLEDACKVAEANTRLAGNMSCIWKLHGDIQLTY 289 (1173)
Q Consensus 210 ~~~A~~~~~~al~~~p~~~~a~~~la~~~~~l~~~~~a~g~~~~A~~~l~~Al~~~~~~~~~~~~~~~~~~~~g~~~~~~ 289 (1173)
+++|+..|+++++.+|++..+++.++.++...|+ ++
T Consensus 196 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-------~~------------------------------------- 231 (389)
T PRK11788 196 LDAARALLKKALAADPQCVRASILLGDLALAQGD-------YA------------------------------------- 231 (389)
T ss_pred HHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCC-------HH-------------------------------------
Confidence 6666666666666666665555555554444333 22
Q ss_pred hhccchhhhhhchhhhhhhhhhhhHhhHhhhhHHHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHHhhHHHhhhhhhhh
Q 045024 290 AKCFPWAEERQSLEFDVETFSASIVSWKTTCLMAAISSKSSYQRALYLAPWQ-ANIYTDIAITSDLIYSLNEAYGHYQSA 368 (1173)
Q Consensus 290 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~-~~~~~~la~~~~~~g~~~eA~~~~~~~ 368 (1173)
+|+..|++++..+|.+ ..++..++.++...|++++|
T Consensus 232 ------------------------------------~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A------- 268 (389)
T PRK11788 232 ------------------------------------AAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEG------- 268 (389)
T ss_pred ------------------------------------HHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHH-------
Confidence 2333333333333332 23344555566666666555
Q ss_pred hHHHHHHHHHHHhhcCCCHHHHHHHHHhhcccHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 045024 369 WHVSEKMALGALLLEGDNCQFWVTLGCLSNYNGLKQHALIRGLQLDVSLADAWAHIGKLYGEVGEKKLARQAFDSARSID 448 (1173)
Q Consensus 369 ~~~A~k~~~~al~~~p~~~~~~~~Lg~~~~~~~~a~~a~~kal~l~p~~~~a~~~Lg~~y~~~g~~e~A~~~f~~al~~~ 448 (1173)
...++++++..|+... ...+|.++.+.|++++|+..|+++++.+
T Consensus 269 -----------------------------------~~~l~~~~~~~p~~~~-~~~la~~~~~~g~~~~A~~~l~~~l~~~ 312 (389)
T PRK11788 269 -----------------------------------LEFLRRALEEYPGADL-LLALAQLLEEQEGPEAAQALLREQLRRH 312 (389)
T ss_pred -----------------------------------HHHHHHHHHhCCCchH-HHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 2344555555665543 4788999999999999999999999999
Q ss_pred CCChhHHHHhHHHHHH--hcCCHHHHHHHHHHHHh
Q 045024 449 PSLALPWAGMSADVQA--SESLVDDAFESCLRAVQ 481 (1173)
Q Consensus 449 P~~~~a~~~l~a~~~~--~~g~~~eA~~~~~~al~ 481 (1173)
|++...... +..... ..|+.++++..+++.++
T Consensus 313 P~~~~~~~l-~~~~~~~~~~g~~~~a~~~~~~~~~ 346 (389)
T PRK11788 313 PSLRGFHRL-LDYHLAEAEEGRAKESLLLLRDLVG 346 (389)
T ss_pred cCHHHHHHH-HHHhhhccCCccchhHHHHHHHHHH
Confidence 987654422 221221 25688888888887765
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.1e-19 Score=214.84 Aligned_cols=306 Identities=18% Similarity=0.139 Sum_probs=247.5
Q ss_pred CHHHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCC----HHHHH
Q 045024 21 DPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDD----SVSGE 96 (1173)
Q Consensus 21 ~~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~----~~a~~ 96 (1173)
.....+..|..+...++ +++|+..|.++++.+|+++.++..+|.++.. .|++++|+..+++++...+.. ..++.
T Consensus 34 ~~~~~y~~g~~~~~~~~-~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~ 111 (389)
T PRK11788 34 RLSRDYFKGLNFLLNEQ-PDKAIDLFIEMLKVDPETVELHLALGNLFRR-RGEVDRAIRIHQNLLSRPDLTREQRLLALQ 111 (389)
T ss_pred hccHHHHHHHHHHhcCC-hHHHHHHHHHHHhcCcccHHHHHHHHHHHHH-cCcHHHHHHHHHHHhcCCCCCHHHHHHHHH
Confidence 34556777888888887 9999999999999999999999999999999 999999999999999864333 24688
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHH
Q 045024 97 ALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSP-----HLWEALGLAYH 171 (1173)
Q Consensus 97 ~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~-----~~~~~la~~~~ 171 (1173)
.+|.+|...|++++|+..|+++++..|.+..++..++.++...|++++|+..++++++..|.+. ..+..+|.++.
T Consensus 112 ~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~ 191 (389)
T PRK11788 112 ELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQAL 191 (389)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999888653 35668899999
Q ss_pred HcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCH-HHHHHHHHHHHHHHHHHHHhhc
Q 045024 172 RLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENV-SAHYGLASGLLGLAKQCINLGA 250 (1173)
Q Consensus 172 ~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-~a~~~la~~~~~l~~~~~a~g~ 250 (1173)
..|++++|+..|+++++.+|++..+++.+|.++...|++++|+..|+++++.+|.+. ..+..++.++...|+
T Consensus 192 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~------- 264 (389)
T PRK11788 192 ARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGD------- 264 (389)
T ss_pred hCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCC-------
Confidence 999999999999999999999999999999999999999999999999999887653 233444444443333
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCChHHHHHHhchHHHHHhhccchhhhhhchhhhhhhhhhhhHhhHhhhhHHHHHHHHH
Q 045024 251 FRWGASLLEDACKVAEANTRLAGNMSCIWKLHGDIQLTYAKCFPWAEERQSLEFDVETFSASIVSWKTTCLMAAISSKSS 330 (1173)
Q Consensus 251 ~~~A~~~l~~Al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 330 (1173)
.++|+..
T Consensus 265 -------------------------------------------------------------------------~~~A~~~ 271 (389)
T PRK11788 265 -------------------------------------------------------------------------EAEGLEF 271 (389)
T ss_pred -------------------------------------------------------------------------HHHHHHH
Confidence 2356666
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHhhHHHhhhhhhhhhHHHHHHHHHHHhhcCCCHHHHHHHHHhhcccHHHHHHHHHH
Q 045024 331 YQRALYLAPWQANIYTDIAITSDLIYSLNEAYGHYQSAWHVSEKMALGALLLEGDNCQFWVTLGCLSNYNGLKQHALIRG 410 (1173)
Q Consensus 331 ~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~A~k~~~~al~~~p~~~~~~~~Lg~~~~~~~~a~~a~~ka 410 (1173)
++++++..|+... ...++.++...|++++| ...|+++
T Consensus 272 l~~~~~~~p~~~~-~~~la~~~~~~g~~~~A------------------------------------------~~~l~~~ 308 (389)
T PRK11788 272 LRRALEEYPGADL-LLALAQLLEEQEGPEAA------------------------------------------QALLREQ 308 (389)
T ss_pred HHHHHHhCCCchH-HHHHHHHHHHhCCHHHH------------------------------------------HHHHHHH
Confidence 6777777786644 47788888888888777 3355666
Q ss_pred HhcCCCcHHHHHHHHHHHHH--cCCHHHHHHHHHHHHh----hCCCC
Q 045024 411 LQLDVSLADAWAHIGKLYGE--VGEKKLARQAFDSARS----IDPSL 451 (1173)
Q Consensus 411 l~l~p~~~~a~~~Lg~~y~~--~g~~e~A~~~f~~al~----~~P~~ 451 (1173)
++..|++......++..... .|+.++|+..+++.++ .+|++
T Consensus 309 l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~~ 355 (389)
T PRK11788 309 LRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPRY 355 (389)
T ss_pred HHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCCE
Confidence 66677666544444433322 4578888887776664 45654
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.88 E-value=8.6e-20 Score=196.60 Aligned_cols=479 Identities=15% Similarity=0.090 Sum_probs=324.3
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----CHHHHHH
Q 045024 93 VSGEALCELLEHGGKESLEVVVCREASDK--SPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPT-----SPHLWEA 165 (1173)
Q Consensus 93 ~a~~~La~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~-----~~~~~~~ 165 (1173)
.+++.|+.-|.....+.+|+..|+-+++. .|+....-.++|.++++..+|.+|+++|+-++..-|. ....+.+
T Consensus 202 svl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~n 281 (840)
T KOG2003|consen 202 SVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNN 281 (840)
T ss_pred HHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhh
Confidence 45889999999999999999999988754 5777777788999999999999999999999988774 2557788
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhc--CC---------CHHHHHHH
Q 045024 166 LGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKIS--SE---------NVSAHYGL 234 (1173)
Q Consensus 166 la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~--p~---------~~~a~~~l 234 (1173)
+|..+.+.|+|+.|+..|+.+++..|+.. +-+++..+++..|+-++-.+.|.+++.+. |+ ++.. ..+
T Consensus 282 igvtfiq~gqy~dainsfdh~m~~~pn~~-a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~-~ll 359 (840)
T KOG2003|consen 282 IGVTFIQAGQYDDAINSFDHCMEEAPNFI-AALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDD-NLL 359 (840)
T ss_pred cCeeEEecccchhhHhhHHHHHHhCccHH-hhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcch-HHH
Confidence 99999999999999999999999999865 44678889999999999999999998752 11 1111 011
Q ss_pred HHHHHHHHHHHHH--hhcHHHHHHHHHHHHHHHHHHhhhcCChHHHHHHhchHHHHHhhccchhhhhhchhhhhhhhhhh
Q 045024 235 ASGLLGLAKQCIN--LGAFRWGASLLEDACKVAEANTRLAGNMSCIWKLHGDIQLTYAKCFPWAEERQSLEFDVETFSAS 312 (1173)
Q Consensus 235 a~~~~~l~~~~~a--~g~~~~A~~~l~~Al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 312 (1173)
-... .... ... ..+-..|....-.+.++...........+.-|.. ..-
T Consensus 360 ~eai-~nd~-lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcl------e~l---------------------- 409 (840)
T KOG2003|consen 360 NEAI-KNDH-LKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCL------ESL---------------------- 409 (840)
T ss_pred HHHH-hhHH-HHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHH------HHH----------------------
Confidence 1111 1000 000 0011111111122222211111111111111110 000
Q ss_pred hHhhHhhhhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHhhhhhhhhhHHHHHHHHHHHhhcCCC--HHHH
Q 045024 313 IVSWKTTCLMAAISSKSSYQRALYLAPWQANIYTDIAITSDLIYSLNEAYGHYQSAWHVSEKMALGALLLEGDN--CQFW 390 (1173)
Q Consensus 313 ~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~A~k~~~~al~~~p~~--~~~~ 390 (1173)
++-..- |--.++-.+.+..+.+.|+++.|... + +.++...+. ..+-
T Consensus 410 -------------k~s~~~-------~la~dlei~ka~~~lk~~d~~~aiei-----------l-kv~~~kdnk~~saaa 457 (840)
T KOG2003|consen 410 -------------KASQHA-------ELAIDLEINKAGELLKNGDIEGAIEI-----------L-KVFEKKDNKTASAAA 457 (840)
T ss_pred -------------HHhhhh-------hhhhhhhhhHHHHHHhccCHHHHHHH-----------H-HHHHhccchhhHHHh
Confidence 000000 11112223344455566666655332 1 111111111 1222
Q ss_pred HHHHHhhc-----ccHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhHHHHhHHHHHHh
Q 045024 391 VTLGCLSN-----YNGLKQHALIRGLQLDVSLADAWAHIGKLYGEVGEKKLARQAFDSARSIDPSLALPWAGMSADVQAS 465 (1173)
Q Consensus 391 ~~Lg~~~~-----~~~~a~~a~~kal~l~p~~~~a~~~Lg~~y~~~g~~e~A~~~f~~al~~~P~~~~a~~~l~a~~~~~ 465 (1173)
++|..+++ +...+++.-..++.++.-++.+..+.|.+-+..|++++|.+.|+.++.-+.....+.++ ++..+..
T Consensus 458 ~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfn-iglt~e~ 536 (840)
T KOG2003|consen 458 NNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFN-IGLTAEA 536 (840)
T ss_pred hhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHH-hcccHHH
Confidence 23333322 33456667778888888888888888888888899999999999988888888888888 6768888
Q ss_pred cCCHHHHHHHHHHHHhcCC-chHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 045024 466 ESLVDDAFESCLRAVQILP-LAEFQIGLAKLAKLSGHLSSSQVFGAIQQAIQRGPHYPESHNLYGLVCEARSDYQAAVVS 544 (1173)
Q Consensus 466 ~g~~~eA~~~~~~al~~~p-~~~~~~~la~l~~~~g~~~~~~A~~~l~~al~~~P~~~~a~~~lg~i~~~~g~~~~A~~~ 544 (1173)
.|+.++|++.|-+.-.+-- ..+..+.++.++....+ ..+|++.+.++...-|++|..+..+|.+|-+.|+-.+|..+
T Consensus 537 ~~~ldeald~f~klh~il~nn~evl~qianiye~led--~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~ 614 (840)
T KOG2003|consen 537 LGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLED--PAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQC 614 (840)
T ss_pred hcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhC--HHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhh
Confidence 8999999988887666532 55777778887777666 56888899999999999999999999999999999988887
Q ss_pred HHHHHHHhhcCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 045024 545 YRLARYAISSSSGTVPNSHFQDISINLARSLSRAGNALDAVRECESLERQGMLDAEVLQVYAFSLWQLGKYDLALSMARN 624 (1173)
Q Consensus 545 ~~kAl~l~~~~pe~~~~~~~~~~~~~La~~~~~~g~~~eAi~~~~~~~~~~p~~~~~~~~la~a~~~~g~~~eA~~~~~~ 624 (1173)
+-..-+. .|- ...+.-.||..|....-.++||.+|+++.-+.|........++.++.+.|+|.+|.+.|+.
T Consensus 615 ~ydsyry---fp~------nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~ 685 (840)
T KOG2003|consen 615 HYDSYRY---FPC------NIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKD 685 (840)
T ss_pred hhhcccc---cCc------chHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 7644222 232 2336778888888888889999999998888888888888888889999999999999998
Q ss_pred HhhhccccccchhhhhHHHHHHHHHHhc
Q 045024 625 LASSVSAMEQSSAAASVSFICRLLYHIS 652 (1173)
Q Consensus 625 aL~~~p~~~~~~~~~~~~~la~l~~~~g 652 (1173)
.-...| .+.+.+-.+.++.-..|
T Consensus 686 ~hrkfp-----edldclkflvri~~dlg 708 (840)
T KOG2003|consen 686 IHRKFP-----EDLDCLKFLVRIAGDLG 708 (840)
T ss_pred HHHhCc-----cchHHHHHHHHHhcccc
Confidence 888777 33355556666654444
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.9e-19 Score=187.35 Aligned_cols=328 Identities=16% Similarity=0.095 Sum_probs=264.3
Q ss_pred CCCCHHHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHH
Q 045024 18 NPDDPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEA 97 (1173)
Q Consensus 18 ~P~~~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~ 97 (1173)
+|.+..-++.+|..++..++ +.+|+..|..+++.+|++..+++..|.+|+. +|+-..|+..+.+++++.|+...+...
T Consensus 34 ~~advekhlElGk~lla~~Q-~sDALt~yHaAve~dp~~Y~aifrRaT~yLA-mGksk~al~Dl~rVlelKpDF~~ARiQ 111 (504)
T KOG0624|consen 34 SPADVEKHLELGKELLARGQ-LSDALTHYHAAVEGDPNNYQAIFRRATVYLA-MGKSKAALQDLSRVLELKPDFMAARIQ 111 (504)
T ss_pred CHHHHHHHHHHHHHHHHhhh-HHHHHHHHHHHHcCCchhHHHHHHHHHHHhh-hcCCccchhhHHHHHhcCccHHHHHHH
Confidence 56678889999999999998 9999999999999999999999999999999 999999999999999999999999999
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCCCc---HHHH------------HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 045024 98 LCELLEHGGKESLEVVVCREASDKSPRA---FWAF------------RRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHL 162 (1173)
Q Consensus 98 La~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~------------~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~ 162 (1173)
.|.++.++|++++|...|+.++..+|++ .++. ......+.-.|+...|+....+.+++.|-++..
T Consensus 112 Rg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l 191 (504)
T KOG0624|consen 112 RGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASL 191 (504)
T ss_pred hchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHH
Confidence 9999999999999999999999999954 2222 223344456799999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHH
Q 045024 163 WEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLASGLLGLA 242 (1173)
Q Consensus 163 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~l~ 242 (1173)
+...+.+|...|+...|+..++.+-++..++.+.++.++.+++..|+.+.++...+.+++++|++...+- .|-++.
T Consensus 192 ~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~----~YKklk 267 (504)
T KOG0624|consen 192 RQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFP----FYKKLK 267 (504)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHH----HHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999864331 122211
Q ss_pred HHHHHhhcHHHHHHHHHHHHHHHHHHhhhcCChHHHHHHhchHHHHHhhccchhhhhhchhhhhhhhhhhhHhhHhhhhH
Q 045024 243 KQCINLGAFRWGASLLEDACKVAEANTRLAGNMSCIWKLHGDIQLTYAKCFPWAEERQSLEFDVETFSASIVSWKTTCLM 322 (1173)
Q Consensus 243 ~~~~a~g~~~~A~~~l~~Al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 322 (1173)
+ ..+.+...+++++ -+
T Consensus 268 K-------v~K~les~e~~ie---------------------------------------------------------~~ 283 (504)
T KOG0624|consen 268 K-------VVKSLESAEQAIE---------------------------------------------------------EK 283 (504)
T ss_pred H-------HHHHHHHHHHHHh---------------------------------------------------------hh
Confidence 1 1111111111110 01
Q ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHH----HHHHHHhhHHHhhhhhhhhhHHHHHHHHHHHhhcCCCHHHHHHHHHhhc
Q 045024 323 AAISSKSSYQRALYLAPWQANIYTDIA----ITSDLIYSLNEAYGHYQSAWHVSEKMALGALLLEGDNCQFWVTLGCLSN 398 (1173)
Q Consensus 323 ~~~~A~~~~~~al~l~p~~~~~~~~la----~~~~~~g~~~eA~~~~~~~~~~A~k~~~~al~~~p~~~~~~~~Lg~~~~ 398 (1173)
.+.+++..+++.++.+|..+.+.++.- .|+...+
T Consensus 284 ~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~------------------------------------------ 321 (504)
T KOG0624|consen 284 HWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDE------------------------------------------ 321 (504)
T ss_pred hHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccC------------------------------------------
Confidence 133567777888888887544433221 1221111
Q ss_pred ccHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhHHHH
Q 045024 399 YNGLKQHALIRGLQLDVSLADAWAHIGKLYGEVGEKKLARQAFDSARSIDPSLALPWAG 457 (1173)
Q Consensus 399 ~~~~a~~a~~kal~l~p~~~~a~~~Lg~~y~~~g~~e~A~~~f~~al~~~P~~~~a~~~ 457 (1173)
+.+.|++...+++..+|++..++...+..|+-...|+.|+..|++|.+.+|++..+.-+
T Consensus 322 ~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~reG 380 (504)
T KOG0624|consen 322 QFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRAREG 380 (504)
T ss_pred CHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHHH
Confidence 33556667788888899999999999999999999999999999999999998666554
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.2e-19 Score=198.39 Aligned_cols=82 Identities=16% Similarity=0.178 Sum_probs=57.4
Q ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhHHHHhHHHHHHhcCCHHHHHHHHHHHHh
Q 045024 402 LKQHALIRGLQLDVSLADAWAHIGKLYGEVGEKKLARQAFDSARSIDPSLALPWAGMSADVQASESLVDDAFESCLRAVQ 481 (1173)
Q Consensus 402 ~a~~a~~kal~l~p~~~~a~~~Lg~~y~~~g~~e~A~~~f~~al~~~P~~~~a~~~l~a~~~~~~g~~~eA~~~~~~al~ 481 (1173)
.|...|.+++..+|+++..|.++|.+|.++|++..|+...+.+++++|+...+|+.. |.++..+.+|++|.+.|.++++
T Consensus 376 ~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RK-g~al~~mk~ydkAleay~eale 454 (539)
T KOG0548|consen 376 EAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRK-GAALRAMKEYDKALEAYQEALE 454 (539)
T ss_pred HHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHh
Confidence 345566677777777777777777777777777777777777777777777777774 4466667777777766666666
Q ss_pred cCC
Q 045024 482 ILP 484 (1173)
Q Consensus 482 ~~p 484 (1173)
.+|
T Consensus 455 ~dp 457 (539)
T KOG0548|consen 455 LDP 457 (539)
T ss_pred cCc
Confidence 665
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=6.7e-18 Score=213.93 Aligned_cols=460 Identities=9% Similarity=-0.015 Sum_probs=324.0
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHhhCC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCC-CcHHHHHHHHHH
Q 045024 59 AFRYLGHYYTRFSIDTQRAIKCYQRAVSLSP--DDSVSGEALCELLEHGGKESLEVVVCREASDKSP-RAFWAFRRLGYL 135 (1173)
Q Consensus 59 a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p--~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~la~~ 135 (1173)
.|..+...+.. .|++++|+..|+.+....+ -+..++..+...+.+.++++.+...+..+.+..- .+...+..+...
T Consensus 89 ~~~~~i~~l~~-~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~ 167 (697)
T PLN03081 89 SLCSQIEKLVA-CGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLM 167 (697)
T ss_pred eHHHHHHHHHc-CCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 45555666666 7777777777777665432 2445566666677777777777777766655321 245666667777
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCChHHHH
Q 045024 136 QLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDT-SIFPLLESGNIFLMLGNFRKGV 214 (1173)
Q Consensus 136 ~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~la~~~~~~g~~~~A~ 214 (1173)
|.+.|++++|.+.|+++.+ | +...|..+...|.+.|++++|++.|++..+..+. +..++..+...+...|..+.+.
T Consensus 168 y~k~g~~~~A~~lf~~m~~--~-~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~ 244 (697)
T PLN03081 168 HVKCGMLIDARRLFDEMPE--R-NLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQ 244 (697)
T ss_pred HhcCCCHHHHHHHHhcCCC--C-CeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHH
Confidence 7777777777777776542 2 4556667777777777777777777776654432 3445555566666667776666
Q ss_pred HHHHHHHhhcC-CCHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHhhhcCChHHHHHHhchHHHHHhhcc
Q 045024 215 EQFQLALKISS-ENVSAHYGLASGLLGLAKQCINLGAFRWGASLLEDACKVAEANTRLAGNMSCIWKLHGDIQLTYAKCF 293 (1173)
Q Consensus 215 ~~~~~al~~~p-~~~~a~~~la~~~~~l~~~~~a~g~~~~A~~~l~~Al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 293 (1173)
+.+..+.+..- .+...+..+...|.+.|+
T Consensus 245 ~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~-------------------------------------------------- 274 (697)
T PLN03081 245 QLHCCVLKTGVVGDTFVSCALIDMYSKCGD-------------------------------------------------- 274 (697)
T ss_pred HHHHHHHHhCCCccceeHHHHHHHHHHCCC--------------------------------------------------
Confidence 66666555331 223344444444444333
Q ss_pred chhhhhhchhhhhhhhhhhhHhhHhhhhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHhhhhhhhhhHHHH
Q 045024 294 PWAEERQSLEFDVETFSASIVSWKTTCLMAAISSKSSYQRALYLAPWQANIYTDIAITSDLIYSLNEAYGHYQSAWHVSE 373 (1173)
Q Consensus 294 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~A~ 373 (1173)
.++|...|++. .+.+...|+.+...|.+.|++++|...
T Consensus 275 ------------------------------~~~A~~vf~~m---~~~~~vt~n~li~~y~~~g~~~eA~~l--------- 312 (697)
T PLN03081 275 ------------------------------IEDARCVFDGM---PEKTTVAWNSMLAGYALHGYSEEALCL--------- 312 (697)
T ss_pred ------------------------------HHHHHHHHHhC---CCCChhHHHHHHHHHHhCCCHHHHHHH---------
Confidence 23344444432 234667788888888888888877432
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHhhcccHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CC
Q 045024 374 KMALGALLLEGDNCQFWVTLGCLSNYNGLKQHALIRGLQ--LDVSLADAWAHIGKLYGEVGEKKLARQAFDSARSID-PS 450 (1173)
Q Consensus 374 k~~~~al~~~p~~~~~~~~Lg~~~~~~~~a~~a~~kal~--l~p~~~~a~~~Lg~~y~~~g~~e~A~~~f~~al~~~-P~ 450 (1173)
|.+... ..| +..++..+...+.+.|++++|.+.+..+++.. +.
T Consensus 313 ---------------------------------f~~M~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~ 358 (697)
T PLN03081 313 ---------------------------------YYEMRDSGVSI-DQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPL 358 (697)
T ss_pred ---------------------------------HHHHHHcCCCC-CHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCC
Confidence 333322 234 56789999999999999999999999999875 44
Q ss_pred ChhHHHHhHHHHHHhcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCC-CHHHHHHHH
Q 045024 451 LALPWAGMSADVQASESLVDDAFESCLRAVQILPLAEFQIGLAKLAKLSGHLSSSQVFGAIQQAIQRGPH-YPESHNLYG 529 (1173)
Q Consensus 451 ~~~a~~~l~a~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~la~l~~~~g~~~~~~A~~~l~~al~~~P~-~~~a~~~lg 529 (1173)
+...+.. +...|.+.|+.++|.+.|+++.+ |+...+..+...+...|+ .++|++.++++.+.... +...+..+.
T Consensus 359 d~~~~~~-Li~~y~k~G~~~~A~~vf~~m~~--~d~~t~n~lI~~y~~~G~--~~~A~~lf~~M~~~g~~Pd~~T~~~ll 433 (697)
T PLN03081 359 DIVANTA-LVDLYSKWGRMEDARNVFDRMPR--KNLISWNALIAGYGNHGR--GTKAVEMFERMIAEGVAPNHVTFLAVL 433 (697)
T ss_pred CeeehHH-HHHHHHHCCCHHHHHHHHHhCCC--CCeeeHHHHHHHHHHcCC--HHHHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 4555656 67799999999999999998865 555566677777777777 57999999999886432 667788889
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 045024 530 LVCEARSDYQAAVVSYRLARYAISSSSGTVPNSHFQDISINLARSLSRAGNALDAVRECESLERQGMLDAEVLQVYAFSL 609 (1173)
Q Consensus 530 ~i~~~~g~~~~A~~~~~kAl~l~~~~pe~~~~~~~~~~~~~La~~~~~~g~~~eAi~~~~~~~~~~p~~~~~~~~la~a~ 609 (1173)
..+.+.|+.++|.++|+.+.+.....|+ ...|..+...|.+.|++++|.+.++++. ..| +...|..+..++
T Consensus 434 ~a~~~~g~~~~a~~~f~~m~~~~g~~p~-------~~~y~~li~~l~r~G~~~eA~~~~~~~~-~~p-~~~~~~~Ll~a~ 504 (697)
T PLN03081 434 SACRYSGLSEQGWEIFQSMSENHRIKPR-------AMHYACMIELLGREGLLDEAYAMIRRAP-FKP-TVNMWAALLTAC 504 (697)
T ss_pred HHHhcCCcHHHHHHHHHHHHHhcCCCCC-------ccchHhHHHHHHhcCCHHHHHHHHHHCC-CCC-CHHHHHHHHHHH
Confidence 9999999999999999988543233332 2258889999999999999999988752 223 355788899999
Q ss_pred HHcCChHHHHHHHHHHhhhccccccchhhhhHHHHHHHHHHhcChhhhhHHhhhCCCC
Q 045024 610 WQLGKYDLALSMARNLASSVSAMEQSSAAASVSFICRLLYHISGLDSTINSILKMPKG 667 (1173)
Q Consensus 610 ~~~g~~~eA~~~~~~aL~~~p~~~~~~~~~~~~~la~l~~~~g~~~~A~~~l~~~p~~ 667 (1173)
...|+++.|...++++++..|. ....+..++.++...|+.++|.++++.+.+.
T Consensus 505 ~~~g~~~~a~~~~~~l~~~~p~-----~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~ 557 (697)
T PLN03081 505 RIHKNLELGRLAAEKLYGMGPE-----KLNNYVVLLNLYNSSGRQAEAAKVVETLKRK 557 (697)
T ss_pred HHcCCcHHHHHHHHHHhCCCCC-----CCcchHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 9999999999999999987773 3457888999999999999999877765543
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.6e-16 Score=203.09 Aligned_cols=476 Identities=11% Similarity=0.002 Sum_probs=279.7
Q ss_pred HHHHHHHccCcHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHC
Q 045024 28 LGLHLWENSESKEKAAEHFVIAAKLNP--QNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHG 105 (1173)
Q Consensus 28 lg~~~~~~~~~~~~A~~~~~~al~~~p--~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~~ 105 (1173)
+-..+.+.|+ +++|+..|+.+...+. .+...+..+...+.. .|..++|...|+.... | +...+..+...+.+.
T Consensus 376 ~y~~l~r~G~-l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~-~g~~~eAl~lf~~M~~--p-d~~Tyn~LL~a~~k~ 450 (1060)
T PLN03218 376 AYNRLLRDGR-IKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKK-QRAVKEAFRFAKLIRN--P-TLSTFNMLMSVCASS 450 (1060)
T ss_pred HHHHHHHCcC-HHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHH-CCCHHHHHHHHHHcCC--C-CHHHHHHHHHHHHhC
Confidence 3334445565 7888888888776543 233344455566677 7888888887776543 3 456677777778888
Q ss_pred CCHHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHH
Q 045024 106 GKESLEVVVCREASDKSPR-AFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYP-TSPHLWEALGLAYHRLGMFSAAIKSY 183 (1173)
Q Consensus 106 g~~~~A~~~~~~al~~~p~-~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~ 183 (1173)
|++++|...++++.+.... +...+..+...|.+.|+.++|.+.|+++.+... .+...|..+...|.+.|++++|++.|
T Consensus 451 g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf 530 (1060)
T PLN03218 451 QDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAY 530 (1060)
T ss_pred cCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 8888888888887766433 567777788888888888888888888776543 35777888888888888888888888
Q ss_pred HHHHHhCC-CChHHHHHHHHHHHHcCChHHHHHHHHHHHhh----cCCCHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHH
Q 045024 184 GRAIELDD-TSIFPLLESGNIFLMLGNFRKGVEQFQLALKI----SSENVSAHYGLASGLLGLAKQCINLGAFRWGASLL 258 (1173)
Q Consensus 184 ~~al~~~p-~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~----~p~~~~a~~~la~~~~~l~~~~~a~g~~~~A~~~l 258 (1173)
++..+..- .+..++..+...+.+.|++++|.+.|+++... .|+ ...+..+...+.+.|+ +++|.+.|
T Consensus 531 ~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD-~vTynaLI~ay~k~G~-------ldeA~elf 602 (1060)
T PLN03218 531 GIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPD-HITVGALMKACANAGQ-------VDRAKEVY 602 (1060)
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCc-HHHHHHHHHHHHHCCC-------HHHHHHHH
Confidence 87765432 24667777888888888888888888877652 333 3445555555555444 33333333
Q ss_pred HHHHHHHHHHhhhcCChHHHHHHhchHHHHHhhccchhhhhhchhhhhhhhhhhhHhhHhhhhHHHHHHHHHHHHHHhcC
Q 045024 259 EDACKVAEANTRLAGNMSCIWKLHGDIQLTYAKCFPWAEERQSLEFDVETFSASIVSWKTTCLMAAISSKSSYQRALYLA 338 (1173)
Q Consensus 259 ~~Al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~ 338 (1173)
++..+.+
T Consensus 603 -------------------------------------------------------------------------~~M~e~g 609 (1060)
T PLN03218 603 -------------------------------------------------------------------------QMIHEYN 609 (1060)
T ss_pred -------------------------------------------------------------------------HHHHHcC
Confidence 3222222
Q ss_pred -CCCHHHHHHHHHHHHHHhhHHHhhhhhhhhhHHHHHHHHHHHh--hcCCCHHHHHHHHHhhc---ccHHHHHHHHHHHh
Q 045024 339 -PWQANIYTDIAITSDLIYSLNEAYGHYQSAWHVSEKMALGALL--LEGDNCQFWVTLGCLSN---YNGLKQHALIRGLQ 412 (1173)
Q Consensus 339 -p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~A~k~~~~al~--~~p~~~~~~~~Lg~~~~---~~~~a~~a~~kal~ 412 (1173)
+.+...|..+...|.+.|++++|...+. .... ..|+ ...+..+...+. +...+.+.+.++.+
T Consensus 610 i~p~~~tynsLI~ay~k~G~~deAl~lf~-----------eM~~~Gv~PD-~~TynsLI~a~~k~G~~eeA~~l~~eM~k 677 (1060)
T PLN03218 610 IKGTPEVYTIAVNSCSQKGDWDFALSIYD-----------DMKKKGVKPD-EVFFSALVDVAGHAGDLDKAFEILQDARK 677 (1060)
T ss_pred CCCChHHHHHHHHHHHhcCCHHHHHHHHH-----------HHHHcCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 2233444444444444444444422211 1111 1222 222222222222 22233444555543
Q ss_pred cC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCChhHHHHhHHHHHHhcCCHHHHHHHHHHHHhc--CCchH
Q 045024 413 LD-VSLADAWAHIGKLYGEVGEKKLARQAFDSARSI--DPSLALPWAGMSADVQASESLVDDAFESCLRAVQI--LPLAE 487 (1173)
Q Consensus 413 l~-p~~~~a~~~Lg~~y~~~g~~e~A~~~f~~al~~--~P~~~~a~~~l~a~~~~~~g~~~eA~~~~~~al~~--~p~~~ 487 (1173)
.. +.+..++..+...|.+.|++++|.+.|+++.+. .|+ ...|.. +...|.+.|++++|.++|+++... .|+..
T Consensus 678 ~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~Pd-vvtyN~-LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~ 755 (1060)
T PLN03218 678 QGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPT-VSTMNA-LITALCEGNQLPKALEVLSEMKRLGLCPNTI 755 (1060)
T ss_pred cCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC-HHHHHH-HHHHHHHCCCHHHHHHHHHHHHHcCCCCCHH
Confidence 32 236677788888888888888888888877653 343 345555 555777888888888888877654 45555
Q ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCCCCCCCchHH
Q 045024 488 FQIGLAKLAKLSGHLSSSQVFGAIQQAIQRGPH-YPESHNLYGLVCEARSDYQAAVVSYRLARYAISSSSGTVPNSHFQD 566 (1173)
Q Consensus 488 ~~~~la~l~~~~g~~~~~~A~~~l~~al~~~P~-~~~a~~~lg~i~~~~g~~~~A~~~~~kAl~l~~~~pe~~~~~~~~~ 566 (1173)
.+..+...+...|+ .++|...+.++.+.... +...+..+..++. +++++|....+.++..
T Consensus 756 Ty~sLL~a~~k~G~--le~A~~l~~~M~k~Gi~pd~~tynsLIglc~--~~y~ka~~l~~~v~~f--------------- 816 (1060)
T PLN03218 756 TYSILLVASERKDD--ADVGLDLLSQAKEDGIKPNLVMCRCITGLCL--RRFEKACALGEPVVSF--------------- 816 (1060)
T ss_pred HHHHHHHHHHHCCC--HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--HHHHHHhhhhhhhhhh---------------
Confidence 55555554555554 46777777777775322 3444444433322 2455555544433211
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHH
Q 045024 567 ISINLARSLSRAGNALDAVRECESLERQGMLD-AEVLQVYAFSLWQLGKYDLALSMARNL 625 (1173)
Q Consensus 567 ~~~~La~~~~~~g~~~eAi~~~~~~~~~~p~~-~~~~~~la~a~~~~g~~~eA~~~~~~a 625 (1173)
+.+......+..++|+..|+++++.+..+ ...+..+-.++...+..+.+...++.+
T Consensus 817 ---~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m 873 (1060)
T PLN03218 817 ---DSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENL 873 (1060)
T ss_pred ---hccccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHh
Confidence 11112222233456888888887776443 234433334556666666666666654
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.5e-18 Score=191.10 Aligned_cols=424 Identities=14% Similarity=0.103 Sum_probs=280.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCC
Q 045024 130 RRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGN 209 (1173)
Q Consensus 130 ~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~ 209 (1173)
...|...+..|+|+.|+.+|..++.++|.+...+.+...+|..+|+|++|.+.-.+.++++|+.+..|..+|..+.-+|+
T Consensus 6 k~kgnaa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~ 85 (539)
T KOG0548|consen 6 KEKGNAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGD 85 (539)
T ss_pred HHHHHhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhccc
Confidence 34567777788888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred hHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHhhhcCChHHHHHH-hchHHHH
Q 045024 210 FRKGVEQFQLALKISSENVSAHYGLASGLLGLAKQCINLGAFRWGASLLEDACKVAEANTRLAGNMSCIWKL-HGDIQLT 288 (1173)
Q Consensus 210 ~~~A~~~~~~al~~~p~~~~a~~~la~~~~~l~~~~~a~g~~~~A~~~l~~Al~~~~~~~~~~~~~~~~~~~-~g~~~~~ 288 (1173)
|++|+..|.+.++.+|+|.....+++.++..... . + +.+.. ..+|.. .++....
T Consensus 86 ~~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~~~---~-~------~~~~~---------------p~~~~~l~~~p~t~ 140 (539)
T KOG0548|consen 86 YEEAILAYSEGLEKDPSNKQLKTGLAQAYLEDYA---A-D------QLFTK---------------PYFHEKLANLPLTN 140 (539)
T ss_pred HHHHHHHHHHHhhcCCchHHHHHhHHHhhhHHHH---h-h------hhccC---------------cHHHHHhhcChhhh
Confidence 8888888888888888888777777776622111 0 0 00000 000000 0000000
Q ss_pred HhhccchhhhhhchhhhhhhhhhhhHhhHhhhhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHh-------
Q 045024 289 YAKCFPWAEERQSLEFDVETFSASIVSWKTTCLMAAISSKSSYQRALYLAPWQANIYTDIAITSDLIYSLNEA------- 361 (1173)
Q Consensus 289 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA------- 361 (1173)
....+.+.....+.+..+|.+...+..--.+....|.....
T Consensus 141 --------------------------------~~~~~~~~~~~l~~~~~~p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~ 188 (539)
T KOG0548|consen 141 --------------------------------YSLSDPAYVKILEIIQKNPTSLKLYLNDPRLMKADGQLKGVDELLFYA 188 (539)
T ss_pred --------------------------------hhhccHHHHHHHHHhhcCcHhhhcccccHHHHHHHHHHhcCccccccc
Confidence 00001111112222222232221111100000000000000
Q ss_pred -------hhhhh-----hhhHHHHHHHHHHHhhcCCCHHHHHHHHHhhc---ccHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 045024 362 -------YGHYQ-----SAWHVSEKMALGALLLEGDNCQFWVTLGCLSN---YNGLKQHALIRGLQLDVSLADAWAHIGK 426 (1173)
Q Consensus 362 -------~~~~~-----~~~~~A~k~~~~al~~~p~~~~~~~~Lg~~~~---~~~~a~~a~~kal~l~p~~~~a~~~Lg~ 426 (1173)
....+ .....-........ .-........+|...+ +...+++.|.+++.++ .+...+.+.+.
T Consensus 189 ~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~--~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~-~~it~~~n~aA 265 (539)
T KOG0548|consen 189 SGIEILASMAEPCKQEHNGFPIIEDNTEERR--VKEKAHKEKELGNAAYKKKDFETAIQHYAKALELA-TDITYLNNIAA 265 (539)
T ss_pred cccccCCCCCCcccccCCCCCccchhHHHHH--HHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh-hhhHHHHHHHH
Confidence 00000 00000000000000 0001122334554444 5667889999999999 88888999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCC------hhHHHHhHHHHHHhcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhC
Q 045024 427 LYGEVGEKKLARQAFDSARSIDPSL------ALPWAGMSADVQASESLVDDAFESCLRAVQILPLAEFQIGLAKLAKLSG 500 (1173)
Q Consensus 427 ~y~~~g~~e~A~~~f~~al~~~P~~------~~a~~~l~a~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~la~l~~~~g 500 (1173)
+|+..|.+.+.+...+++++..-+. ...-+..+|..+...++++.|+.+|.+++...-.++....+..
T Consensus 266 ~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~------ 339 (539)
T KOG0548|consen 266 VYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKE------ 339 (539)
T ss_pred HHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHH------
Confidence 9999999999998888887754332 1111222566788889999999999999887655544443332
Q ss_pred CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHHHhcCC
Q 045024 501 HLSSSQVFGAIQQAIQRGPHYPESHNLYGLVCEARSDYQAAVVSYRLARYAISSSSGTVPNSHFQDISINLARSLSRAGN 580 (1173)
Q Consensus 501 ~~~~~~A~~~l~~al~~~P~~~~a~~~lg~i~~~~g~~~~A~~~~~kAl~l~~~~pe~~~~~~~~~~~~~La~~~~~~g~ 580 (1173)
.++++...+...-.+|.-..-....|..++..|+|..|+..|.+++ ..+|+ .+..|.|.|-+|.+.|.
T Consensus 340 ---~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAI---kr~P~------Da~lYsNRAac~~kL~~ 407 (539)
T KOG0548|consen 340 ---AEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAI---KRDPE------DARLYSNRAACYLKLGE 407 (539)
T ss_pred ---HHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHH---hcCCc------hhHHHHHHHHHHHHHhh
Confidence 2466666777777788877777788999999999999999999985 44444 34589999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHhhhccc
Q 045024 581 ALDAVRECESLERQGMLDAEVLQVYAFSLWQLGKYDLALSMARNLASSVSA 631 (1173)
Q Consensus 581 ~~eAi~~~~~~~~~~p~~~~~~~~la~a~~~~g~~~eA~~~~~~aL~~~p~ 631 (1173)
+..|++.+++.++.+|....+++.-|.++..+.+|++|++.|+.+++.+|.
T Consensus 408 ~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~ 458 (539)
T KOG0548|consen 408 YPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPS 458 (539)
T ss_pred HHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCch
Confidence 999999999999999999999999999999999999999999999998873
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.85 E-value=8.9e-18 Score=188.14 Aligned_cols=436 Identities=14% Similarity=0.059 Sum_probs=296.8
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q 045024 39 KEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREA 118 (1173)
Q Consensus 39 ~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~a 118 (1173)
|..|+-+-+++..+. .+|.-.+.+|+++.- .|++++|......- .+...+....+..+.++.+..++++|..++.+.
T Consensus 32 y~~a~f~adkV~~l~-~dp~d~~~~aq~l~~-~~~y~ra~~lit~~-~le~~d~~cryL~~~~l~~lk~~~~al~vl~~~ 108 (611)
T KOG1173|consen 32 YKTALFWADKVAGLT-NDPADIYWLAQVLYL-GRQYERAAHLITTY-KLEKRDIACRYLAAKCLVKLKEWDQALLVLGRG 108 (611)
T ss_pred hhHHHHHHHHHHhcc-CChHHHHHHHHHHHh-hhHHHHHHHHHHHh-hhhhhhHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 555555555555444 444444555666666 55555555444332 334444455555566666666666666555521
Q ss_pred ------HhhCCC-------------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 045024 119 ------SDKSPR-------------------AFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRL 173 (1173)
Q Consensus 119 ------l~~~p~-------------------~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~ 173 (1173)
+..+|. .....+..|.+|....+.++|...|.+++..++.+.++...+....+-.
T Consensus 109 ~~~~~~f~yy~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~D~~c~Ea~~~lvs~~mlt 188 (611)
T KOG1173|consen 109 HVETNPFSYYEKDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLADAKCFEAFEKLVSAHMLT 188 (611)
T ss_pred chhhcchhhcchhhhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhcchhhHHHHHHHHHHHhcc
Confidence 111111 1233456677777778888888888888887777766655443332221
Q ss_pred C--------C------HHHHHHHHHHHHHh-------------CC--------CChHHHHHHHHHHHHcCChHHHHHHHH
Q 045024 174 G--------M------FSAAIKSYGRAIEL-------------DD--------TSIFPLLESGNIFLMLGNFRKGVEQFQ 218 (1173)
Q Consensus 174 g--------~------~~~A~~~~~~al~~-------------~p--------~~~~a~~~la~~~~~~g~~~~A~~~~~ 218 (1173)
- . ..+=.+..+...++ .| ++++.....+..++..+++.+..+.++
T Consensus 189 ~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~ 268 (611)
T KOG1173|consen 189 AQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAEKADRLYYGCRFKECLKITE 268 (611)
T ss_pred hhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhH
Confidence 1 0 00001111111110 11 356677788888999999999999999
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHhhhcCChHHHHHHhchHHHHHhhccchhhh
Q 045024 219 LALKISSENVSAHYGLASGLLGLAKQCINLGAFRWGASLLEDACKVAEANTRLAGNMSCIWKLHGDIQLTYAKCFPWAEE 298 (1173)
Q Consensus 219 ~al~~~p~~~~a~~~la~~~~~l~~~~~a~g~~~~A~~~l~~Al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 298 (1173)
..++.+|-+...+.....++..+|+ ..+-..+
T Consensus 269 ~lle~dpfh~~~~~~~ia~l~el~~--------------~n~Lf~l---------------------------------- 300 (611)
T KOG1173|consen 269 ELLEKDPFHLPCLPLHIACLYELGK--------------SNKLFLL---------------------------------- 300 (611)
T ss_pred HHHhhCCCCcchHHHHHHHHHHhcc--------------cchHHHH----------------------------------
Confidence 9999999887765444446666555 1111111
Q ss_pred hhchhhhhhhhhhhhHhhHhhhhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHhhhhhhhhhHHHHHHHHH
Q 045024 299 RQSLEFDVETFSASIVSWKTTCLMAAISSKSSYQRALYLAPWQANIYTDIAITSDLIYSLNEAYGHYQSAWHVSEKMALG 378 (1173)
Q Consensus 299 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~A~k~~~~ 378 (1173)
=.+.++..|+.+-.|+.+|..|...|++.+| ++.+.+
T Consensus 301 --------------------------------sh~LV~~yP~~a~sW~aVg~YYl~i~k~seA-----------Rry~SK 337 (611)
T KOG1173|consen 301 --------------------------------SHKLVDLYPSKALSWFAVGCYYLMIGKYSEA-----------RRYFSK 337 (611)
T ss_pred --------------------------------HHHHHHhCCCCCcchhhHHHHHHHhcCcHHH-----------HHHHHH
Confidence 1345667788888888888888888888877 455667
Q ss_pred HHhhcCCCHHHHHHHHHhhc---ccHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhHH
Q 045024 379 ALLLEGDNCQFWVTLGCLSN---YNGLKQHALIRGLQLDVSLADAWAHIGKLYGEVGEKKLARQAFDSARSIDPSLALPW 455 (1173)
Q Consensus 379 al~~~p~~~~~~~~Lg~~~~---~~~~a~~a~~kal~l~p~~~~a~~~Lg~~y~~~g~~e~A~~~f~~al~~~P~~~~a~ 455 (1173)
+..++|....+|...|..+. ..+++..+|..|-++-|+.-.....+|.-|.+.++++.|...|.+|+.+.|++|...
T Consensus 338 at~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~ 417 (611)
T KOG1173|consen 338 ATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAPSDPLVL 417 (611)
T ss_pred HhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhh
Confidence 77888888888888887766 445677788999988888888888899999999999999999999999999998888
Q ss_pred HHhHHHHHHhcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 045024 456 AGMSADVQASESLVDDAFESCLRAVQILPLAEFQIGLAKLAKLSGHLSSSQVFGAIQQAIQRGPHYPESHNLYGLVCEAR 535 (1173)
Q Consensus 456 ~~l~a~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~la~l~~~~g~~~~~~A~~~l~~al~~~P~~~~a~~~lg~i~~~~ 535 (1173)
.. +|.+....+.+.+|..+|+.++..-+ ......+.....+.++|-++.+.
T Consensus 418 ~E-lgvvay~~~~y~~A~~~f~~~l~~ik----------------------------~~~~e~~~w~p~~~NLGH~~Rkl 468 (611)
T KOG1173|consen 418 HE-LGVVAYTYEEYPEALKYFQKALEVIK----------------------------SVLNEKIFWEPTLNNLGHAYRKL 468 (611)
T ss_pred hh-hhheeehHhhhHHHHHHHHHHHHHhh----------------------------hccccccchhHHHHhHHHHHHHH
Confidence 87 55566688999999999988773211 11111223445679999999999
Q ss_pred CCHHHHHHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 045024 536 SDYQAAVVSYRLARYAISSSSGTVPNSHFQDISINLARSLSRAGNALDAVRECESLERQGMLDAEVLQVYA 606 (1173)
Q Consensus 536 g~~~~A~~~~~kAl~l~~~~pe~~~~~~~~~~~~~La~~~~~~g~~~eAi~~~~~~~~~~p~~~~~~~~la 606 (1173)
+.+++|+..|++++.+ .+....++..+|-+|..+|+++.|++.|.+++-+.|++.-+-..|+
T Consensus 469 ~~~~eAI~~~q~aL~l---------~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~ 530 (611)
T KOG1173|consen 469 NKYEEAIDYYQKALLL---------SPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLK 530 (611)
T ss_pred hhHHHHHHHHHHHHHc---------CCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHH
Confidence 9999999999999766 3334458999999999999999999999999999999966554444
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.85 E-value=2e-18 Score=186.18 Aligned_cols=477 Identities=16% Similarity=0.101 Sum_probs=345.3
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCC-----cHHHHH
Q 045024 58 VAFRYLGHYYTRFSIDTQRAIKCYQRAVS--LSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPR-----AFWAFR 130 (1173)
Q Consensus 58 ~a~~~lg~~~~~~~g~~~eA~~~~~~al~--~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~-----~~~a~~ 130 (1173)
.+++.++.-|.. ...+.+|+..|+-.++ ..|+.......+|.++++..++.+|+.+|+-++..-|. ....+.
T Consensus 202 svl~nlaqqy~~-ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~ 280 (840)
T KOG2003|consen 202 SVLFNLAQQYEA-NDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILN 280 (840)
T ss_pred HHHHHHHHHhhh-hHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHh
Confidence 578889999999 8899999999998875 45777777889999999999999999999999998885 256778
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--C---------CCh-HHHH
Q 045024 131 RLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELD--D---------TSI-FPLL 198 (1173)
Q Consensus 131 ~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p---------~~~-~a~~ 198 (1173)
++|..+.+.|.|+.|+..|+..++..|+.. +-+++..+++..|+-++-.+.|.+.+.+. | +++ ..+.
T Consensus 281 nigvtfiq~gqy~dainsfdh~m~~~pn~~-a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll 359 (840)
T KOG2003|consen 281 NIGVTFIQAGQYDDAINSFDHCMEEAPNFI-AALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLL 359 (840)
T ss_pred hcCeeEEecccchhhHhhHHHHHHhCccHH-hhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHH
Confidence 899999999999999999999999999754 55678889999999999999999998751 1 111 1111
Q ss_pred HHH--HHHH---HcCChHHHHHHHHHHHhh-cCCCHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHhhhc
Q 045024 199 ESG--NIFL---MLGNFRKGVEQFQLALKI-SSENVSAHYGLASGLLGLAKQCINLGAFRWGASLLEDACKVAEANTRLA 272 (1173)
Q Consensus 199 ~la--~~~~---~~g~~~~A~~~~~~al~~-~p~~~~a~~~la~~~~~l~~~~~a~g~~~~A~~~l~~Al~~~~~~~~~~ 272 (1173)
+-+ .-+. ...+-..|.++.-.+.++ .|--.. -+..| +++.++.+.. ....+-..++.
T Consensus 360 ~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~-~fa~g---------------~dwcle~lk~-s~~~~la~dle 422 (840)
T KOG2003|consen 360 NEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAP-DFAAG---------------CDWCLESLKA-SQHAELAIDLE 422 (840)
T ss_pred HHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhcccccc-chhcc---------------cHHHHHHHHH-hhhhhhhhhhh
Confidence 111 1111 112222333333333332 121100 00000 0111111100 00001111111
Q ss_pred CChHHHHHHhchHHHHHhhccchhhhhhchhhhhhhhhhhhHhhHhhhhHHHHHHHHHHHHHHhcCCCC-HHHHHHHHHH
Q 045024 273 GNMSCIWKLHGDIQLTYAKCFPWAEERQSLEFDVETFSASIVSWKTTCLMAAISSKSSYQRALYLAPWQ-ANIYTDIAIT 351 (1173)
Q Consensus 273 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~-~~~~~~la~~ 351 (1173)
.+.+.-+... +++++|++.++-.-+.+... ..+-+++..+
T Consensus 423 i~ka~~~lk~---------------------------------------~d~~~aieilkv~~~kdnk~~saaa~nl~~l 463 (840)
T KOG2003|consen 423 INKAGELLKN---------------------------------------GDIEGAIEILKVFEKKDNKTASAAANNLCAL 463 (840)
T ss_pred hhHHHHHHhc---------------------------------------cCHHHHHHHHHHHHhccchhhHHHhhhhHHH
Confidence 1111111111 23445666655444433322 2234555555
Q ss_pred HHHHh--hHHHhhhhhhhhhHHHHHHHHHHHhhcCCCHHHHHHHHHhhc---ccHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 045024 352 SDLIY--SLNEAYGHYQSAWHVSEKMALGALLLEGDNCQFWVTLGCLSN---YNGLKQHALIRGLQLDVSLADAWAHIGK 426 (1173)
Q Consensus 352 ~~~~g--~~~eA~~~~~~~~~~A~k~~~~al~~~p~~~~~~~~Lg~~~~---~~~~a~~a~~kal~l~p~~~~a~~~Lg~ 426 (1173)
++.+| ++.+| ......++..+.-++.++.+.|.+.+ +.+.+.+.|..++..+....++++++|.
T Consensus 464 ~flqggk~~~~a-----------qqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfnigl 532 (840)
T KOG2003|consen 464 RFLQGGKDFADA-----------QQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGL 532 (840)
T ss_pred HHHhcccchhHH-----------HHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcc
Confidence 55443 34444 34456778888888888888887766 5667888899999999989999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCChhHHHHhHHHHHHhcCCHHHHHHHHHHHHhcCC-chHHHHHHHHHHHHhCCCChH
Q 045024 427 LYGEVGEKKLARQAFDSARSIDPSLALPWAGMSADVQASESLVDDAFESCLRAVQILP-LAEFQIGLAKLAKLSGHLSSS 505 (1173)
Q Consensus 427 ~y~~~g~~e~A~~~f~~al~~~P~~~~a~~~l~a~~~~~~g~~~eA~~~~~~al~~~p-~~~~~~~la~l~~~~g~~~~~ 505 (1173)
.+..+|+.++|+++|-+.-.+--+++.+.+. ++.+|....+..+|++++.++..+-| +|...-.++.++-..|+- .
T Consensus 533 t~e~~~~ldeald~f~klh~il~nn~evl~q-ianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdk--s 609 (840)
T KOG2003|consen 533 TAEALGNLDEALDCFLKLHAILLNNAEVLVQ-IANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDK--S 609 (840)
T ss_pred cHHHhcCHHHHHHHHHHHHHHHHhhHHHHHH-HHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccch--h
Confidence 9999999999999999988888888888888 78899999999999999999999988 567777889998888874 4
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHHHhcCCHHHHH
Q 045024 506 QVFGAIQQAIQRGPHYPESHNLYGLVCEARSDYQAAVVSYRLARYAISSSSGTVPNSHFQDISINLARSLSRAGNALDAV 585 (1173)
Q Consensus 506 ~A~~~l~~al~~~P~~~~a~~~lg~i~~~~g~~~~A~~~~~kAl~l~~~~pe~~~~~~~~~~~~~La~~~~~~g~~~eAi 585 (1173)
+|...+-......|.+.+..-.+|..|....-+++|+.+|+++. + . .|........++.++.+.|+|..|.
T Consensus 610 qafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaa-l--i------qp~~~kwqlmiasc~rrsgnyqka~ 680 (840)
T KOG2003|consen 610 QAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAA-L--I------QPNQSKWQLMIASCFRRSGNYQKAF 680 (840)
T ss_pred hhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHH-h--c------CccHHHHHHHHHHHHHhcccHHHHH
Confidence 88888888888899999999999999999999999999999993 2 2 2333445667899999999999999
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHcCCh
Q 045024 586 RECESLERQGMLDAEVLQVYAFSLWQLGKY 615 (1173)
Q Consensus 586 ~~~~~~~~~~p~~~~~~~~la~a~~~~g~~ 615 (1173)
+.|+.+-+..|.+.+.+-.+.++.-.+|-.
T Consensus 681 d~yk~~hrkfpedldclkflvri~~dlgl~ 710 (840)
T KOG2003|consen 681 DLYKDIHRKFPEDLDCLKFLVRIAGDLGLK 710 (840)
T ss_pred HHHHHHHHhCccchHHHHHHHHHhccccch
Confidence 999999999999999998889888888754
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.2e-15 Score=166.55 Aligned_cols=532 Identities=13% Similarity=0.064 Sum_probs=309.5
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc
Q 045024 46 FVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRA 125 (1173)
Q Consensus 46 ~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~ 125 (1173)
|+..+..+.-+...|...|+--.. ++++..|...|++|+..+-.+...|...+.+-++......|..++++++..-|.-
T Consensus 62 fEd~irrnR~~~~~WikYaqwEes-q~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRV 140 (677)
T KOG1915|consen 62 FEDQIRRNRLNMQVWIKYAQWEES-QKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRV 140 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchH
Confidence 333444444445555555555555 5666666666666665555555555556665555555666666666666655555
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 045024 126 FWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFL 205 (1173)
Q Consensus 126 ~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~ 205 (1173)
-..|+....+-..+|+...|.++|++-+...|+ ..+|......-.+.+..+.|...|++.+-..|+ +..|...+..-.
T Consensus 141 dqlWyKY~ymEE~LgNi~gaRqiferW~~w~P~-eqaW~sfI~fElRykeieraR~IYerfV~~HP~-v~~wikyarFE~ 218 (677)
T KOG1915|consen 141 DQLWYKYIYMEEMLGNIAGARQIFERWMEWEPD-EQAWLSFIKFELRYKEIERARSIYERFVLVHPK-VSNWIKYARFEE 218 (677)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHcCCCc-HHHHHHHHHHHHHhhHHHHHHHHHHHHheeccc-HHHHHHHHHHHH
Confidence 555555555555556666666666665555553 445555555555555556666666655544443 445555555555
Q ss_pred HcCChHHHHHHHHHHHhhcCCCHH-HHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHhhhcCChHHHHHHhch
Q 045024 206 MLGNFRKGVEQFQLALKISSENVS-AHYGLASGLLGLAKQCINLGAFRWGASLLEDACKVAEANTRLAGNMSCIWKLHGD 284 (1173)
Q Consensus 206 ~~g~~~~A~~~~~~al~~~p~~~~-a~~~la~~~~~l~~~~~a~g~~~~A~~~l~~Al~~~~~~~~~~~~~~~~~~~~g~ 284 (1173)
+.|+..-|...|+++++.-.++.. ...-.+.+....+. ..++.|..+|.-|++..++.. ...++.....
T Consensus 219 k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~q-----kE~ERar~iykyAld~~pk~r-----aeeL~k~~~~ 288 (677)
T KOG1915|consen 219 KHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQ-----KEYERARFIYKYALDHIPKGR-----AEELYKKYTA 288 (677)
T ss_pred hcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHhcCccc-----HHHHHHHHHH
Confidence 566666666666655554333222 11112222222211 223444444444444333210 0111111111
Q ss_pred HHHHHhhccchhhhhhchhhhhhhhhhhhHhhHhhhhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHhhhh
Q 045024 285 IQLTYAKCFPWAEERQSLEFDVETFSASIVSWKTTCLMAAISSKSSYQRALYLAPWQANIYTDIAITSDLIYSLNEAYGH 364 (1173)
Q Consensus 285 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~ 364 (1173)
.....|+. .+..+.+.+ +-.-.|+..++.+|.+.++|+....+....|+.+.-
T Consensus 289 fEKqfGd~--------------~gIEd~Iv~----------KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~I--- 341 (677)
T KOG1915|consen 289 FEKQFGDK--------------EGIEDAIVG----------KRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRI--- 341 (677)
T ss_pred HHHHhcch--------------hhhHHHHhh----------hhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHH---
Confidence 11111110 000011110 122346777888888888888776665544443332
Q ss_pred hhhhhHHHHHHHHHHHhhcCCCHHHHHHHHHhhcccHHHHHHHHHHHhcCCCc---------HHHHHHHHHH-HHHcCCH
Q 045024 365 YQSAWHVSEKMALGALLLEGDNCQFWVTLGCLSNYNGLKQHALIRGLQLDVSL---------ADAWAHIGKL-YGEVGEK 434 (1173)
Q Consensus 365 ~~~~~~~A~k~~~~al~~~p~~~~~~~~Lg~~~~~~~~a~~a~~kal~l~p~~---------~~a~~~Lg~~-y~~~g~~ 434 (1173)
.+.|++|+..-|.. ...|.+.+.. -....+.
T Consensus 342 ---------------------------------------re~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ 382 (677)
T KOG1915|consen 342 ---------------------------------------RETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDV 382 (677)
T ss_pred ---------------------------------------HHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 34455555433321 1233333221 2345788
Q ss_pred HHHHHHHHHHHhhCCCC----hhHHHHhHHHHHHhcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCCChHHHHHH
Q 045024 435 KLARQAFDSARSIDPSL----ALPWAGMSADVQASESLVDDAFESCLRAVQILPLAEFQIGLAKLAKLSGHLSSSQVFGA 510 (1173)
Q Consensus 435 e~A~~~f~~al~~~P~~----~~a~~~l~a~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~la~l~~~~g~~~~~~A~~~ 510 (1173)
+.+.++|+.++++-|.. +..|+. .+....++.+...|...+-.++..-|.+....++..+....+++ +.....
T Consensus 383 ertr~vyq~~l~lIPHkkFtFaKiWlm-yA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~ef--DRcRkL 459 (677)
T KOG1915|consen 383 ERTRQVYQACLDLIPHKKFTFAKIWLM-YAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREF--DRCRKL 459 (677)
T ss_pred HHHHHHHHHHHhhcCcccchHHHHHHH-HHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhH--HHHHHH
Confidence 99999999999998864 445555 45566688999999999999999999888888888877777774 578889
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 045024 511 IQQAIQRGPHYPESHNLYGLVCEARSDYQAAVVSYRLARYAISSSSGTVPNSHFQDISINLARSLSRAGNALDAVRECES 590 (1173)
Q Consensus 511 l~~al~~~P~~~~a~~~lg~i~~~~g~~~~A~~~~~kAl~l~~~~pe~~~~~~~~~~~~~La~~~~~~g~~~eAi~~~~~ 590 (1173)
|++.++..|.+..+|...|.+-...|+.+.|..+|+-|++. |. .+.|. ..+-.....-...|.++.|...|++
T Consensus 460 YEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~q----p~-ldmpe--llwkaYIdFEi~~~E~ekaR~LYer 532 (677)
T KOG1915|consen 460 YEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQ----PA-LDMPE--LLWKAYIDFEIEEGEFEKARALYER 532 (677)
T ss_pred HHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcC----cc-cccHH--HHHHHhhhhhhhcchHHHHHHHHHH
Confidence 99999999999999999999999999999999999988532 11 11111 2444555666788999999999999
Q ss_pred HHHcCCCCHHHHHHHHHHHH-----HcC-----------ChHHHHHHHHHHhhhccccccchhhhhHHHHHHH--HHHhc
Q 045024 591 LERQGMLDAEVLQVYAFSLW-----QLG-----------KYDLALSMARNLASSVSAMEQSSAAASVSFICRL--LYHIS 652 (1173)
Q Consensus 591 ~~~~~p~~~~~~~~la~a~~-----~~g-----------~~~eA~~~~~~aL~~~p~~~~~~~~~~~~~la~l--~~~~g 652 (1173)
+++..+... +|+..|.--. +.| ....|..+|+++.......+. +...+..+-+.. --..|
T Consensus 533 lL~rt~h~k-vWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~~~k~~~~-KeeR~~LLEaw~~~E~~~G 610 (677)
T KOG1915|consen 533 LLDRTQHVK-VWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANTYLKESTP-KEERLMLLEAWKNMEETFG 610 (677)
T ss_pred HHHhcccch-HHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHHHHHhcCc-HHHHHHHHHHHHHHHHhcC
Confidence 998876655 6654444333 444 567889999988765433332 222333333332 23345
Q ss_pred ChhhhhHHhhhCCCCc
Q 045024 653 GLDSTINSILKMPKGL 668 (1173)
Q Consensus 653 ~~~~A~~~l~~~p~~~ 668 (1173)
...+...+-.++|+.+
T Consensus 611 ~~~d~~~V~s~mPk~v 626 (677)
T KOG1915|consen 611 TEGDVERVQSKMPKKV 626 (677)
T ss_pred chhhHHHHHHhccHHH
Confidence 5555555556666555
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=7.4e-16 Score=197.07 Aligned_cols=417 Identities=9% Similarity=-0.002 Sum_probs=279.4
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q 045024 41 KAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSP--DDSVSGEALCELLEHGGKESLEVVVCREA 118 (1173)
Q Consensus 41 ~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p--~~~~a~~~La~~~~~~g~~~~A~~~~~~a 118 (1173)
.++.+.+......++ ...+..+-..+.+ .|++++|+..|+...+.+. .+...+..+...+...|..++|...++.+
T Consensus 355 ~~~~~~~~~~~~~~~-~~~~~~~y~~l~r-~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M 432 (1060)
T PLN03218 355 NSLAAYNGGVSGKRK-SPEYIDAYNRLLR-DGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLI 432 (1060)
T ss_pred hhHHHhccccCCCCC-chHHHHHHHHHHH-CcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHc
Confidence 334444444433333 3333444445557 7888889988888876553 23334455666777888888888888776
Q ss_pred HhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHH
Q 045024 119 SDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYP-TSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDD-TSIFP 196 (1173)
Q Consensus 119 l~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~a 196 (1173)
.. | +...|..+...+...|++++|...|+++.+... .+...+..+...|.+.|+.++|.+.|+++.+... .+..+
T Consensus 433 ~~--p-d~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvT 509 (1060)
T PLN03218 433 RN--P-TLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHT 509 (1060)
T ss_pred CC--C-CHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHH
Confidence 54 4 467778888888888888888888888877643 3577888888888888899888888888877653 26778
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhhc--CCCHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHhhhcCC
Q 045024 197 LLESGNIFLMLGNFRKGVEQFQLALKIS--SENVSAHYGLASGLLGLAKQCINLGAFRWGASLLEDACKVAEANTRLAGN 274 (1173)
Q Consensus 197 ~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~la~~~~~l~~~~~a~g~~~~A~~~l~~Al~~~~~~~~~~~~ 274 (1173)
|..+...|.+.|++++|++.|+++.+.. |+ ...+..+...+.+.|+ +++
T Consensus 510 ynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD-~vTYnsLI~a~~k~G~-------~de--------------------- 560 (1060)
T PLN03218 510 FGALIDGCARAGQVAKAFGAYGIMRSKNVKPD-RVVFNALISACGQSGA-------VDR--------------------- 560 (1060)
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHCCC-------HHH---------------------
Confidence 8888888888888888888888886543 33 4455555555555444 322
Q ss_pred hHHHHHHhchHHHHHhhccchhhhhhchhhhhhhhhhhhHhhHhhhhHHHHHHHHHHHHHHh----cCCCCHHHHHHHHH
Q 045024 275 MSCIWKLHGDIQLTYAKCFPWAEERQSLEFDVETFSASIVSWKTTCLMAAISSKSSYQRALY----LAPWQANIYTDIAI 350 (1173)
Q Consensus 275 ~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~----l~p~~~~~~~~la~ 350 (1173)
|...|.+... +.| +...|..+..
T Consensus 561 ----------------------------------------------------A~~lf~eM~~~~~gi~P-D~vTynaLI~ 587 (1060)
T PLN03218 561 ----------------------------------------------------AFDVLAEMKAETHPIDP-DHITVGALMK 587 (1060)
T ss_pred ----------------------------------------------------HHHHHHHHHHhcCCCCC-cHHHHHHHHH
Confidence 2233333322 234 3567777777
Q ss_pred HHHHHhhHHHhhhhhhhhhHHHHHHHHHHHhhcCCCHHHHHHHHHhhcccHHHHHHHHHHHhcC-CCcHHHHHHHHHHHH
Q 045024 351 TSDLIYSLNEAYGHYQSAWHVSEKMALGALLLEGDNCQFWVTLGCLSNYNGLKQHALIRGLQLD-VSLADAWAHIGKLYG 429 (1173)
Q Consensus 351 ~~~~~g~~~eA~~~~~~~~~~A~k~~~~al~~~p~~~~~~~~Lg~~~~~~~~a~~a~~kal~l~-p~~~~a~~~Lg~~y~ 429 (1173)
.|.+.|++++|.. .|+++.+.+ +.++..|..+...|.
T Consensus 588 ay~k~G~ldeA~e------------------------------------------lf~~M~e~gi~p~~~tynsLI~ay~ 625 (1060)
T PLN03218 588 ACANAGQVDRAKE------------------------------------------VYQMIHEYNIKGTPEVYTIAVNSCS 625 (1060)
T ss_pred HHHHCCCHHHHHH------------------------------------------HHHHHHHcCCCCChHHHHHHHHHHH
Confidence 8888887777733 233333322 336678888888888
Q ss_pred HcCCHHHHHHHHHHHHhh--CCCChhHHHHhHHHHHHhcCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHhCCCChH
Q 045024 430 EVGEKKLARQAFDSARSI--DPSLALPWAGMSADVQASESLVDDAFESCLRAVQIL--PLAEFQIGLAKLAKLSGHLSSS 505 (1173)
Q Consensus 430 ~~g~~e~A~~~f~~al~~--~P~~~~a~~~l~a~~~~~~g~~~eA~~~~~~al~~~--p~~~~~~~la~l~~~~g~~~~~ 505 (1173)
+.|++++|...|+++.+. .|+ ...+.. +...+.+.|++++|.++++.+.+.. |+...+..+...+...|+ .+
T Consensus 626 k~G~~deAl~lf~eM~~~Gv~PD-~~Tyns-LI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~--~e 701 (1060)
T PLN03218 626 QKGDWDFALSIYDDMKKKGVKPD-EVFFSA-LVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKN--WK 701 (1060)
T ss_pred hcCCHHHHHHHHHHHHHcCCCCC-HHHHHH-HHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCC--HH
Confidence 888888888888888775 454 334444 5667888888888888888887753 444555556666666665 45
Q ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHHHhcCCHHHH
Q 045024 506 QVFGAIQQAIQRG-PHYPESHNLYGLVCEARSDYQAAVVSYRLARYAISSSSGTVPNSHFQDISINLARSLSRAGNALDA 584 (1173)
Q Consensus 506 ~A~~~l~~al~~~-P~~~~a~~~lg~i~~~~g~~~~A~~~~~kAl~l~~~~pe~~~~~~~~~~~~~La~~~~~~g~~~eA 584 (1173)
+|...|+++.+.. ..+...|+.+...|.+.|++++|.++|+++... ...|+ ..++..+...+.+.|++++|
T Consensus 702 eA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~-Gi~Pd-------~~Ty~sLL~a~~k~G~le~A 773 (1060)
T PLN03218 702 KALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRL-GLCPN-------TITYSILLVASERKDDADVG 773 (1060)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc-CCCCC-------HHHHHHHHHHHHHCCCHHHH
Confidence 7777777776542 225666777777788888888888888766322 11121 23566677777778888888
Q ss_pred HHHHHHHHHcCCCC
Q 045024 585 VRECESLERQGMLD 598 (1173)
Q Consensus 585 i~~~~~~~~~~p~~ 598 (1173)
.+.+.++.+.+..+
T Consensus 774 ~~l~~~M~k~Gi~p 787 (1060)
T PLN03218 774 LDLLSQAKEDGIKP 787 (1060)
T ss_pred HHHHHHHHHcCCCC
Confidence 88888877765544
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.2e-17 Score=175.25 Aligned_cols=322 Identities=16% Similarity=0.104 Sum_probs=257.6
Q ss_pred CCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHH
Q 045024 53 NPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRL 132 (1173)
Q Consensus 53 ~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l 132 (1173)
+|.+..-++.+|.-++. .|++..|+..|..|++.+|++-.+++..|.+|..+|+-.-|+..+.+++++.|+...+....
T Consensus 34 ~~advekhlElGk~lla-~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQR 112 (504)
T KOG0624|consen 34 SPADVEKHLELGKELLA-RGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQR 112 (504)
T ss_pred CHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHh
Confidence 45677889999999999 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHH------------HHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHH
Q 045024 133 GYLQLHHKKWSEAVQSLQHAIRGYPTSP---HLW------------EALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPL 197 (1173)
Q Consensus 133 a~~~~~~g~~~~A~~~l~~al~~~p~~~---~~~------------~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~ 197 (1173)
|.+++++|++++|+..|+.+++.+|++. ++. ......++..|+...|+......+++.|-+...+
T Consensus 113 g~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~ 192 (504)
T KOG0624|consen 113 GVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLR 192 (504)
T ss_pred chhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHH
Confidence 9999999999999999999999999542 222 2233445567999999999999999999999999
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHhhhcCChHH
Q 045024 198 LESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLASGLLGLAKQCINLGAFRWGASLLEDACKVAEANTRLAGNMSC 277 (1173)
Q Consensus 198 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~l~~~~~a~g~~~~A~~~l~~Al~~~~~~~~~~~~~~~ 277 (1173)
...+.+|...|+...|+..++.+-++..++.+.++.++..+...|+ .+
T Consensus 193 ~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd--------------~~------------------ 240 (504)
T KOG0624|consen 193 QARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGD--------------AE------------------ 240 (504)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhh--------------HH------------------
Confidence 9999999999999999999999999999999999998888888777 12
Q ss_pred HHHHhchHHHHHhhccchhhhhhchhhhhhhhhhhhHhhHhhhhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhh
Q 045024 278 IWKLHGDIQLTYAKCFPWAEERQSLEFDVETFSASIVSWKTTCLMAAISSKSSYQRALYLAPWQANIYTDIAITSDLIYS 357 (1173)
Q Consensus 278 ~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~ 357 (1173)
.++...++.++++|++...+-..- ....
T Consensus 241 ------------------------------------------------~sL~~iRECLKldpdHK~Cf~~YK----klkK 268 (504)
T KOG0624|consen 241 ------------------------------------------------NSLKEIRECLKLDPDHKLCFPFYK----KLKK 268 (504)
T ss_pred ------------------------------------------------HHHHHHHHHHccCcchhhHHHHHH----HHHH
Confidence 234445666677776544332111 1111
Q ss_pred HHHhhhhhhhhhHHHHHHHHHHHhhcCCCHHHHHHHHHhhcccHHHHHHHHHHHhcCCCcHHHH----HHHHHHHHHcCC
Q 045024 358 LNEAYGHYQSAWHVSEKMALGALLLEGDNCQFWVTLGCLSNYNGLKQHALIRGLQLDVSLADAW----AHIGKLYGEVGE 433 (1173)
Q Consensus 358 ~~eA~~~~~~~~~~A~k~~~~al~~~p~~~~~~~~Lg~~~~~~~~a~~a~~kal~l~p~~~~a~----~~Lg~~y~~~g~ 433 (1173)
..+. +.. .+++++. .......+..++.++.+|..+.+. -.+-.++..-|+
T Consensus 269 v~K~-------les----~e~~ie~---------------~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~ 322 (504)
T KOG0624|consen 269 VVKS-------LES----AEQAIEE---------------KHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQ 322 (504)
T ss_pred HHHH-------HHH----HHHHHhh---------------hhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCC
Confidence 1111 000 0011100 011233455677777777744433 346678888999
Q ss_pred HHHHHHHHHHHHhhCCCChhHHHHhHHHHHHhcCCHHHHHHHHHHHHhcCCch
Q 045024 434 KKLARQAFDSARSIDPSLALPWAGMSADVQASESLVDDAFESCLRAVQILPLA 486 (1173)
Q Consensus 434 ~e~A~~~f~~al~~~P~~~~a~~~l~a~~~~~~g~~~eA~~~~~~al~~~p~~ 486 (1173)
+.+|+.....++.++|+++.++.. .+.+|.-...|++|+..|+++.+.+++.
T Consensus 323 ~~eAiqqC~evL~~d~~dv~~l~d-RAeA~l~dE~YD~AI~dye~A~e~n~sn 374 (504)
T KOG0624|consen 323 FGEAIQQCKEVLDIDPDDVQVLCD-RAEAYLGDEMYDDAIHDYEKALELNESN 374 (504)
T ss_pred HHHHHHHHHHHHhcCchHHHHHHH-HHHHHhhhHHHHHHHHHHHHHHhcCccc
Confidence 999999999999999999999988 7889999999999999999999998853
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.5e-16 Score=182.42 Aligned_cols=439 Identities=17% Similarity=0.110 Sum_probs=276.4
Q ss_pred CCCHHHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhC--CCCHHHHH
Q 045024 19 PDDPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLS--PDDSVSGE 96 (1173)
Q Consensus 19 P~~~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~--p~~~~a~~ 96 (1173)
.+++.++-.+...+...|+ |+.+.+.|++++...-...+.|+.++..|.. .|....|+...+..+... |+++..+.
T Consensus 320 qnd~ai~d~Lt~al~~~g~-f~~lae~fE~~~~~~~~~~e~w~~~als~sa-ag~~s~Av~ll~~~~~~~~~ps~~s~~L 397 (799)
T KOG4162|consen 320 QNDAAIFDHLTFALSRCGQ-FEVLAEQFEQALPFSFGEHERWYQLALSYSA-AGSDSKAVNLLRESLKKSEQPSDISVLL 397 (799)
T ss_pred cchHHHHHHHHHHHHHHHH-HHHHHHHHHHHhHhhhhhHHHHHHHHHHHHH-hccchHHHHHHHhhcccccCCCcchHHH
Confidence 3577777777877777776 9999999999987777778899999999999 999999999999998887 77777766
Q ss_pred HHHHHH-HHCCCHHHHHHHHHHHHhhCC-----CcHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHHhCCCC
Q 045024 97 ALCELL-EHGGKESLEVVVCREASDKSP-----RAFWAFRRLGYLQLHH-----------KKWSEAVQSLQHAIRGYPTS 159 (1173)
Q Consensus 97 ~La~~~-~~~g~~~~A~~~~~~al~~~p-----~~~~a~~~la~~~~~~-----------g~~~~A~~~l~~al~~~p~~ 159 (1173)
..+.++ ...|..++++.+..+++..-. -.+..+..+|.+|..+ ....++++.++++++.+|+|
T Consensus 398 masklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~d 477 (799)
T KOG4162|consen 398 MASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTD 477 (799)
T ss_pred HHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 666665 556888999999999887321 1356777777777532 23577888999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCHHHHHHHHHHH
Q 045024 160 PHLWEALGLAYHRLGMFSAAIKSYGRAIELDD-TSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLASGL 238 (1173)
Q Consensus 160 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~ 238 (1173)
+.+.+.++.-|..+++.+.|.....+++++++ +++.+|..++.++...+++.+|+...+.++...|+|.........+-
T Consensus 478 p~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~ 557 (799)
T KOG4162|consen 478 PLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIE 557 (799)
T ss_pred chHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhh
Confidence 99999999999999999999999999999954 56889999999999999999999999999988888765444433333
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHHHHHHHHHhhhcCChHHHHHHhchHHHHHhhccchhhhhhchhhhhhhhhhhhHhhHh
Q 045024 239 LGLAKQCINLGAFRWGASLLEDACKVAEANTRLAGNMSCIWKLHGDIQLTYAKCFPWAEERQSLEFDVETFSASIVSWKT 318 (1173)
Q Consensus 239 ~~l~~~~~a~g~~~~A~~~l~~Al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 318 (1173)
...+ +.++++.....-+.+.+.......... .|......+. + .
T Consensus 558 ~~~~-------~~e~~l~t~~~~L~~we~~~~~q~~~~-----~g~~~~lk~~----------l---------------~ 600 (799)
T KOG4162|consen 558 LTFN-------DREEALDTCIHKLALWEAEYGVQQTLD-----EGKLLRLKAG----------L---------------H 600 (799)
T ss_pred hhcc-------cHHHHHHHHHHHHHHHHhhhhHhhhhh-----hhhhhhhhcc----------c---------------c
Confidence 3333 344444444443333332221111100 0000000000 0 0
Q ss_pred hhhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHhhhhhhhhhHHHHHHHHHHHhhcCCCHH-------HHH
Q 045024 319 TCLMAAISSKSSYQRALYLAPWQANIYTDIAITSDLIYSLNEAYGHYQSAWHVSEKMALGALLLEGDNCQ-------FWV 391 (1173)
Q Consensus 319 ~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~A~k~~~~al~~~p~~~~-------~~~ 391 (1173)
....+..+|+..++++..+ ... +...+.. + .+ .......|+... .|.
T Consensus 601 la~~q~~~a~s~sr~ls~l--------------~a~--~~~~~~s--e------~~--Lp~s~~~~~~~~~~~~~~~lwl 654 (799)
T KOG4162|consen 601 LALSQPTDAISTSRYLSSL--------------VAS--QLKSAGS--E------LK--LPSSTVLPGPDSLWYLLQKLWL 654 (799)
T ss_pred cCcccccccchhhHHHHHH--------------HHh--hhhhccc--c------cc--cCcccccCCCCchHHHHHHHHH
Confidence 0000011111222111111 000 0000000 0 00 001111122211 122
Q ss_pred HHHHhhc---ccHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhHHHHhHHHHHHhcCC
Q 045024 392 TLGCLSN---YNGLKQHALIRGLQLDVSLADAWAHIGKLYGEVGEKKLARQAFDSARSIDPSLALPWAGMSADVQASESL 468 (1173)
Q Consensus 392 ~Lg~~~~---~~~~a~~a~~kal~l~p~~~~a~~~Lg~~y~~~g~~e~A~~~f~~al~~~P~~~~a~~~l~a~~~~~~g~ 468 (1173)
..+..+. +.+.+..|+.++-.++|..+..|+..|.++...|+.++|.+.|..++.++|+++..... +|.++.+.|
T Consensus 655 laa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~A-la~~lle~G- 732 (799)
T KOG4162|consen 655 LAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTA-LAELLLELG- 732 (799)
T ss_pred HHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHH-HHHHHHHhC-
Confidence 2222221 33344445555555555555555555555555555555555555555555555555555 444555555
Q ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 045024 469 VDDAFESCLRAVQILPLAEFQIGLAKLAKLSGHLSSSQVFGAIQQAIQRGPHYPESHNLYGLVCEARSDYQAAVVSYRLA 548 (1173)
Q Consensus 469 ~~eA~~~~~~al~~~p~~~~~~~la~l~~~~g~~~~~~A~~~l~~al~~~P~~~~a~~~lg~i~~~~g~~~~A~~~~~kA 548 (1173)
+-...+....+..+++.+|.++.+|+.+|.+..+.|+.++|.+.|+-+
T Consensus 733 --------------------------------~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa 780 (799)
T KOG4162|consen 733 --------------------------------SPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAA 780 (799)
T ss_pred --------------------------------CcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHH
Confidence 333334445777888889999999999999999999999999999999
Q ss_pred HHHhhcCC
Q 045024 549 RYAISSSS 556 (1173)
Q Consensus 549 l~l~~~~p 556 (1173)
+.+-...|
T Consensus 781 ~qLe~S~P 788 (799)
T KOG4162|consen 781 LQLEESNP 788 (799)
T ss_pred HhhccCCC
Confidence 87755544
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.81 E-value=8.6e-15 Score=166.71 Aligned_cols=451 Identities=14% Similarity=0.059 Sum_probs=306.3
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 045024 5 GALLLQLEDSLEANPDDPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRA 84 (1173)
Q Consensus 5 ~aAi~~l~~al~~~P~~~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~a 84 (1173)
.+.++..+.+|+..|++++.+-..|..+...|+ -++|......++..++.+..+|..+|.++.. .++|++|+++|+.|
T Consensus 24 kkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~-~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~-dK~Y~eaiKcy~nA 101 (700)
T KOG1156|consen 24 KKGLKLIKQILKKFPEHGESLAMKGLTLNCLGK-KEEAYELVRLGLRNDLKSHVCWHVLGLLQRS-DKKYDEAIKCYRNA 101 (700)
T ss_pred HhHHHHHHHHHHhCCccchhHHhccchhhcccc-hHHHHHHHHHHhccCcccchhHHHHHHHHhh-hhhHHHHHHHHHHH
Confidence 446888899999999999999999999999998 7999999999999999999999999999999 99999999999999
Q ss_pred HhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCC--
Q 045024 85 VSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGY---PTS-- 159 (1173)
Q Consensus 85 l~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~---p~~-- 159 (1173)
+.++|+|...+..++.+..++++++.....-.+.++..|..-..|...+..+...|++..|...++...+.. |..
T Consensus 102 l~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~ 181 (700)
T KOG1156|consen 102 LKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKED 181 (700)
T ss_pred HhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999988877654 322
Q ss_pred ---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCHHHHHHHHH
Q 045024 160 ---PHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLAS 236 (1173)
Q Consensus 160 ---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~ 236 (1173)
.........+....|.+++|.+.+..--...-+........+.++.++|++++|...|...+..+|++...+..+-.
T Consensus 182 ~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~ 261 (700)
T KOG1156|consen 182 YEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEK 261 (700)
T ss_pred HHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHH
Confidence 34556667778889999988888766443333445566778999999999999999999999999999887776666
Q ss_pred HHHHHHHHHHHhhcHHHHH-HHHHHHHHHHHHHhhhcCChHHHHHHhchHH-HHHhhcc-chh-hhhhchhhhhhhhhhh
Q 045024 237 GLLGLAKQCINLGAFRWGA-SLLEDACKVAEANTRLAGNMSCIWKLHGDIQ-LTYAKCF-PWA-EERQSLEFDVETFSAS 312 (1173)
Q Consensus 237 ~~~~l~~~~~a~g~~~~A~-~~l~~Al~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~-~~~-~~~~~l~~~~~~~~~~ 312 (1173)
++..... ..++. ..|...-+.++.......- ......|+-. ..+..+. +.. ...+..-.+...+...
T Consensus 262 ~lgk~~d-------~~~~lk~ly~~ls~~y~r~e~p~Rl--plsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~ 332 (700)
T KOG1156|consen 262 ALGKIKD-------MLEALKALYAILSEKYPRHECPRRL--PLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKD 332 (700)
T ss_pred HHHHHhh-------hHHHHHHHHHHHhhcCcccccchhc--cHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHhc
Confidence 5541111 11111 2233322222221110000 0000111000 0000000 000 0000000000000000
Q ss_pred hHhhHhhhhHHHHHHHHHHHHHHhcC------------CCCH--HHHHHHHHHHHHHhhHHHhhhhhhhhhHHHHHHHHH
Q 045024 313 IVSWKTTCLMAAISSKSSYQRALYLA------------PWQA--NIYTDIAITSDLIYSLNEAYGHYQSAWHVSEKMALG 378 (1173)
Q Consensus 313 ~~~~~~~~~~~~~~A~~~~~~al~l~------------p~~~--~~~~~la~~~~~~g~~~eA~~~~~~~~~~A~k~~~~ 378 (1173)
...+ .-.++=+..|...+.-. |..+ ..++.++.-+...|+++.| ...+..
T Consensus 333 ----p~k~-~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A-----------~~yId~ 396 (700)
T KOG1156|consen 333 ----PEKV-AFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVA-----------LEYIDL 396 (700)
T ss_pred ----hhHh-HHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHH-----------HHHHHH
Confidence 0000 00112222233333222 2222 3355666777777777776 445667
Q ss_pred HHhhcCCCHHHHHHHHHhhccc---HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC----
Q 045024 379 ALLLEGDNCQFWVTLGCLSNYN---GLKQHALIRGLQLDVSLADAWAHIGKLYGEVGEKKLARQAFDSARSIDPSL---- 451 (1173)
Q Consensus 379 al~~~p~~~~~~~~Lg~~~~~~---~~a~~a~~kal~l~p~~~~a~~~Lg~~y~~~g~~e~A~~~f~~al~~~P~~---- 451 (1173)
++...|..++.+...|.++... ..|...+..+.++|..|..+...-|.-..+.++.++|.+...+--+..-+-
T Consensus 397 AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L 476 (700)
T KOG1156|consen 397 AIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNL 476 (700)
T ss_pred HhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHccccHHHHHHHHHhhhcccchhhhH
Confidence 8888888888888888777644 455566788888877666666677888888888888888776655433211
Q ss_pred ---hhHHHHh-HHHHHHhcCCHHHHHHHHHHHHhc
Q 045024 452 ---ALPWAGM-SADVQASESLVDDAFESCLRAVQI 482 (1173)
Q Consensus 452 ---~~a~~~l-~a~~~~~~g~~~eA~~~~~~al~~ 482 (1173)
.-.|+.. -|.+|.++|++.+|+.-|..+-.+
T Consensus 477 ~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~k~ 511 (700)
T KOG1156|consen 477 AEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIEKH 511 (700)
T ss_pred HHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHHHH
Confidence 1134331 267788888888888777665554
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.2e-16 Score=181.52 Aligned_cols=418 Identities=16% Similarity=0.080 Sum_probs=282.7
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCcHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHccCCHHHHHHHHH
Q 045024 5 GALLLQLEDSLEANPDDPSLHLDLGLHLWENSESKEKAAEHFVIAAKLN--PQNAVAFRYLGHYYTRFSIDTQRAIKCYQ 82 (1173)
Q Consensus 5 ~aAi~~l~~al~~~P~~~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~~g~~~eA~~~~~ 82 (1173)
..+.+.|++++..--...+.|+.++..|...|. -..|+..+++..... |+++..+...+.++.+..|..++++.+..
T Consensus 340 ~~lae~fE~~~~~~~~~~e~w~~~als~saag~-~s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~l~~~eegldYA~ 418 (799)
T KOG4162|consen 340 EVLAEQFEQALPFSFGEHERWYQLALSYSAAGS-DSKAVNLLRESLKKSEQPSDISVLLMASKLCIERLKLVEEGLDYAQ 418 (799)
T ss_pred HHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhcc-chHHHHHHHhhcccccCCCcchHHHHHHHHHHhchhhhhhHHHHHH
Confidence 345788999988888888999999999999988 599999999999887 88888887777777665899999999999
Q ss_pred HHHhhCC-----CCHHHHHHHHHHHHHCC-----------CHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHH
Q 045024 83 RAVSLSP-----DDSVSGEALCELLEHGG-----------KESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAV 146 (1173)
Q Consensus 83 ~al~~~p-----~~~~a~~~La~~~~~~g-----------~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~ 146 (1173)
+++.... -.+..+..+|..|..+- ...+++..++++++.+|+|+.+.+.++.-|..+++.+.|+
T Consensus 419 kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~~if~lalq~A~~R~l~sAl 498 (799)
T KOG4162|consen 419 KAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPLVIFYLALQYAEQRQLTSAL 498 (799)
T ss_pred HHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhHHHHH
Confidence 9998431 12345777777774331 2568999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhcC
Q 045024 147 QSLQHAIRGYP-TSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISS 225 (1173)
Q Consensus 147 ~~l~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p 225 (1173)
...+++++.++ +++.+|..++.++...+++.+|+...+.+++-.|+|.........+-...|+.++|+......+..-.
T Consensus 499 ~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we 578 (799)
T KOG4162|consen 499 DYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWE 578 (799)
T ss_pred HHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHH
Confidence 99999999954 77899999999999999999999999999999999888888888888889999999999998887654
Q ss_pred CCHHHHHHHH--HHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHhhhcCChHHHHHHhchHHHHHhhccchhhhhhchh
Q 045024 226 ENVSAHYGLA--SGLLGLAKQCINLGAFRWGASLLEDACKVAEANTRLAGNMSCIWKLHGDIQLTYAKCFPWAEERQSLE 303 (1173)
Q Consensus 226 ~~~~a~~~la--~~~~~l~~~~~a~g~~~~A~~~l~~Al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~ 303 (1173)
....+...++ ......+....+..+..++......+......-.... .. .. .........
T Consensus 579 ~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~-~s----------e~-------~Lp~s~~~~ 640 (799)
T KOG4162|consen 579 AEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSA-GS----------EL-------KLPSSTVLP 640 (799)
T ss_pred hhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhc-cc----------cc-------ccCcccccC
Confidence 4333332222 1111111111222222233333333322222000000 00 00 000000000
Q ss_pred hhhhhhhhh-----hHhhHhhhhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHhhhhhhhhhHHHHHHHHH
Q 045024 304 FDVETFSAS-----IVSWKTTCLMAAISSKSSYQRALYLAPWQANIYTDIAITSDLIYSLNEAYGHYQSAWHVSEKMALG 378 (1173)
Q Consensus 304 ~~~~~~~~~-----~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~A~k~~~~ 378 (1173)
.....+... .........+..++|..++.++-.+.|..+..|+..|.++...|...+|
T Consensus 641 ~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA----------------- 703 (799)
T KOG4162|consen 641 GPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEA----------------- 703 (799)
T ss_pred CCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHH-----------------
Confidence 000000000 1111112223345666777777777777777777777777777666666
Q ss_pred HHhhcCCCHHHHHHHHHhhcccHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHH--HHHHHHhhCCCChhHHH
Q 045024 379 ALLLEGDNCQFWVTLGCLSNYNGLKQHALIRGLQLDVSLADAWAHIGKLYGEVGEKKLARQ--AFDSARSIDPSLALPWA 456 (1173)
Q Consensus 379 al~~~p~~~~~~~~Lg~~~~~~~~a~~a~~kal~l~p~~~~a~~~Lg~~y~~~g~~e~A~~--~f~~al~~~P~~~~a~~ 456 (1173)
.++|..++.++|+++.+...+|.++.+.|+..-|.. .+..+++++|.++++|+
T Consensus 704 -------------------------~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~ 758 (799)
T KOG4162|consen 704 -------------------------KEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWY 758 (799)
T ss_pred -------------------------HHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHH
Confidence 345566666666666666666666666666666655 66666666666666666
Q ss_pred HhHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 045024 457 GMSADVQASESLVDDAFESCLRAVQILP 484 (1173)
Q Consensus 457 ~l~a~~~~~~g~~~eA~~~~~~al~~~p 484 (1173)
+ +|.++...|+.++|.+.|..++++.+
T Consensus 759 ~-LG~v~k~~Gd~~~Aaecf~aa~qLe~ 785 (799)
T KOG4162|consen 759 Y-LGEVFKKLGDSKQAAECFQAALQLEE 785 (799)
T ss_pred H-HHHHHHHccchHHHHHHHHHHHhhcc
Confidence 6 55566666666666666666666643
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.79 E-value=2e-14 Score=157.11 Aligned_cols=461 Identities=14% Similarity=0.104 Sum_probs=345.5
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 045024 79 KCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPT 158 (1173)
Q Consensus 79 ~~~~~al~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~ 158 (1173)
+.|+..+..+.-+...|...|.--..++++..|..+|++++..+..+...|...+.+-++.+....|..++++++.+-|.
T Consensus 60 kefEd~irrnR~~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPR 139 (677)
T KOG1915|consen 60 KEFEDQIRRNRLNMQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPR 139 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcch
Confidence 44556666666677889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCHHHHHHHHHHH
Q 045024 159 SPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLASGL 238 (1173)
Q Consensus 159 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~ 238 (1173)
-...|+....+-..+|+...|.+.|++-++..|+ ..+|......-.+.++.+.|...|++.+-..|+ ...+.
T Consensus 140 VdqlWyKY~ymEE~LgNi~gaRqiferW~~w~P~-eqaW~sfI~fElRykeieraR~IYerfV~~HP~-v~~wi------ 211 (677)
T KOG1915|consen 140 VDQLWYKYIYMEEMLGNIAGARQIFERWMEWEPD-EQAWLSFIKFELRYKEIERARSIYERFVLVHPK-VSNWI------ 211 (677)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHcCCCc-HHHHHHHHHHHHHhhHHHHHHHHHHHHheeccc-HHHHH------
Confidence 9999999999999999999999999999999987 568888888889999999999999999988876 33443
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHHHHHHHHHhhhcCChHHHHHHhchHHHHHhhccchhhhhhchhhhhhhhhhhhHhhHh
Q 045024 239 LGLAKQCINLGAFRWGASLLEDACKVAEANTRLAGNMSCIWKLHGDIQLTYAKCFPWAEERQSLEFDVETFSASIVSWKT 318 (1173)
Q Consensus 239 ~~l~~~~~a~g~~~~A~~~l~~Al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 318 (1173)
+.++.....|...-+...|+.|++.+.+.... ..+....+.+..
T Consensus 212 -kyarFE~k~g~~~~aR~VyerAie~~~~d~~~----e~lfvaFA~fEe------------------------------- 255 (677)
T KOG1915|consen 212 -KYARFEEKHGNVALARSVYERAIEFLGDDEEA----EILFVAFAEFEE------------------------------- 255 (677)
T ss_pred -HHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHH----HHHHHHHHHHHH-------------------------------
Confidence 34444555566777888888888876552211 111111111111
Q ss_pred hhhHHHHHHHHHHHHHHhcCCCCH--HHHHHHHHHHHHHhhHHHhhhhhhhhhHHHHHHHHHHHhhcCCCHHHHHHHHHh
Q 045024 319 TCLMAAISSKSSYQRALYLAPWQA--NIYTDIAITSDLIYSLNEAYGHYQSAWHVSEKMALGALLLEGDNCQFWVTLGCL 396 (1173)
Q Consensus 319 ~~~~~~~~A~~~~~~al~l~p~~~--~~~~~la~~~~~~g~~~eA~~~~~~~~~~A~k~~~~al~~~p~~~~~~~~Lg~~ 396 (1173)
....++.|...|+-++..-|.+. .++......--+-|+...- ..++
T Consensus 256 -~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gI---------------Ed~I---------------- 303 (677)
T KOG1915|consen 256 -RQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGI---------------EDAI---------------- 303 (677)
T ss_pred -HHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhh---------------HHHH----------------
Confidence 11225578888999998888763 2222222111111111100 0000
Q ss_pred hcccHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCh---------hHHHHhHHHHHHhcC
Q 045024 397 SNYNGLKQHALIRGLQLDVSLADAWAHIGKLYGEVGEKKLARQAFDSARSIDPSLA---------LPWAGMSADVQASES 467 (1173)
Q Consensus 397 ~~~~~~a~~a~~kal~l~p~~~~a~~~Lg~~y~~~g~~e~A~~~f~~al~~~P~~~---------~a~~~l~a~~~~~~g 467 (1173)
.+.-.--|++.+..+|.|.++|+..-.+-...|+.+.-.+.|++|+..-|... ..|++.+...-....
T Consensus 304 ---v~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~e 380 (677)
T KOG1915|consen 304 ---VGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAE 380 (677)
T ss_pred ---hhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 01122347888999999999999999999999999999999999998777532 345554333334688
Q ss_pred CHHHHHHHHHHHHhcCCch-----HHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 045024 468 LVDDAFESCLRAVQILPLA-----EFQIGLAKLAKLSGHLSSSQVFGAIQQAIQRGPHYPESHNLYGLVCEARSDYQAAV 542 (1173)
Q Consensus 468 ~~~eA~~~~~~al~~~p~~-----~~~~~la~l~~~~g~~~~~~A~~~l~~al~~~P~~~~a~~~lg~i~~~~g~~~~A~ 542 (1173)
|.+.+.++|+.++++-|.. ..++..+.+..++.++ ..|...+-.++...|.+-.. -....+-.+.++++...
T Consensus 381 d~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l--~~ARkiLG~AIG~cPK~KlF-k~YIelElqL~efDRcR 457 (677)
T KOG1915|consen 381 DVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNL--TGARKILGNAIGKCPKDKLF-KGYIELELQLREFDRCR 457 (677)
T ss_pred hHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHccc--HHHHHHHHHHhccCCchhHH-HHHHHHHHHHhhHHHHH
Confidence 9999999999999998854 4455556666666664 48889999999998876543 45556777889999999
Q ss_pred HHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHH--HHHHHHHHHHHcCChHHHHH
Q 045024 543 VSYRLARYAISSSSGTVPNSHFQDISINLARSLSRAGNALDAVRECESLERQGMLDAE--VLQVYAFSLWQLGKYDLALS 620 (1173)
Q Consensus 543 ~~~~kAl~l~~~~pe~~~~~~~~~~~~~La~~~~~~g~~~eAi~~~~~~~~~~p~~~~--~~~~la~a~~~~g~~~eA~~ 620 (1173)
..|++-+ +-.|++ -.+|...|..-..+|+.+.|...|+-++.+...+.. .|-.+..--...|.++.|..
T Consensus 458 kLYEkfl---e~~Pe~------c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~ 528 (677)
T KOG1915|consen 458 KLYEKFL---EFSPEN------CYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARA 528 (677)
T ss_pred HHHHHHH---hcChHh------hHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHH
Confidence 9999884 444443 448899999999999999999999999877666544 33445555667899999999
Q ss_pred HHHHHhhhcc
Q 045024 621 MARNLASSVS 630 (1173)
Q Consensus 621 ~~~~aL~~~p 630 (1173)
+|+++|+..+
T Consensus 529 LYerlL~rt~ 538 (677)
T KOG1915|consen 529 LYERLLDRTQ 538 (677)
T ss_pred HHHHHHHhcc
Confidence 9999998654
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=4.6e-17 Score=199.57 Aligned_cols=215 Identities=15% Similarity=0.040 Sum_probs=173.2
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc--------CcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHH
Q 045024 6 ALLLQLEDSLEANPDDPSLHLDLGLHLWENS--------ESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRA 77 (1173)
Q Consensus 6 aAi~~l~~al~~~P~~~~~~~~lg~~~~~~~--------~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA 77 (1173)
.|+..|+++++.+|+++.++..+|.++...+ +++++|+..++++++++|+++.++..+|.++.. .|++++|
T Consensus 279 ~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~-~g~~~~A 357 (553)
T PRK12370 279 QALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTI-HSEYIVG 357 (553)
T ss_pred HHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-ccCHHHH
Confidence 4688888888888888888888887765322 226788888888888888888888888888888 8888888
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Q 045024 78 IKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGY- 156 (1173)
Q Consensus 78 ~~~~~~al~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~- 156 (1173)
+..|+++++++|+++.+++.+|.++...|++++|+..++++++.+|.++..+..++.+++..|++++|+..+++++...
T Consensus 358 ~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~ 437 (553)
T PRK12370 358 SLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHL 437 (553)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhcc
Confidence 8888888888888888888888888888888888888888888888877766666667777888888888888888764
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhh
Q 045024 157 PTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKI 223 (1173)
Q Consensus 157 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~ 223 (1173)
|+++..+..+|.++...|++++|+..+.++....|....+...++..|...|+ +|...++++++.
T Consensus 438 p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~a~~~l~~ll~~ 502 (553)
T PRK12370 438 QDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNSE--RALPTIREFLES 502 (553)
T ss_pred ccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccHH--HHHHHHHHHHHH
Confidence 67788888888888888888888888888887778777788888888887774 666666666553
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.3e-15 Score=164.09 Aligned_cols=404 Identities=15% Similarity=0.109 Sum_probs=299.5
Q ss_pred CCCHHHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 045024 19 PDDPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEAL 98 (1173)
Q Consensus 19 P~~~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~L 98 (1173)
|.+....+..+.+|...++ -+.|+.......... ..+..-..++..+.. .++..++.-.|...+...|--..+...+
T Consensus 94 ~~~~e~~r~~aecy~~~~n-~~~Ai~~l~~~p~t~-r~p~inlMla~l~~~-g~r~~~~vl~ykevvrecp~aL~~i~~l 170 (564)
T KOG1174|consen 94 FGDAEQRRRAAECYRQIGN-TDMAIETLLQVPPTL-RSPRINLMLARLQHH-GSRHKEAVLAYKEVIRECPMALQVIEAL 170 (564)
T ss_pred cccHHHHHHHHHHHHHHcc-chHHHHHHhcCCccc-cchhHHHHHHHHHhc-cccccHHHHhhhHHHHhcchHHHHHHHH
Confidence 3456667777888877776 577777666543211 235566666777777 6666666666776666555433332222
Q ss_pred HHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHH-HHHHHHHHcCCHH--HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 045024 99 CELLEHGGKESLEVVVCREASDKSPRAFWAFR-RLGYLQLHHKKWS--EAVQSLQHAIRGYPTSPHLWEALGLAYHRLGM 175 (1173)
Q Consensus 99 a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~-~la~~~~~~g~~~--~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~ 175 (1173)
...-. .|. +.+-- --.++...|.+++.+. ..+..+...++.. -+..++-+-....|+|...+..+|.+++..|+
T Consensus 171 l~l~v-~g~-e~~S~-~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gd 247 (564)
T KOG1174|consen 171 LELGV-NGN-EINSL-VMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGD 247 (564)
T ss_pred HHHhh-cch-hhhhh-hhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcC
Confidence 22111 111 11111 1122344555544432 2344444444444 44455556667788999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhhcHHHHH
Q 045024 176 FSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLASGLLGLAKQCINLGAFRWGA 255 (1173)
Q Consensus 176 ~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~l~~~~~a~g~~~~A~ 255 (1173)
+++|+..|+++.-++|....+.-..|.++...|+++.-...-...+..+.....-|+--+..+....+
T Consensus 248 n~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~------------ 315 (564)
T KOG1174|consen 248 YFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEKK------------ 315 (564)
T ss_pred chHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhh------------
Confidence 99999999999999999999999999999999999998888888888876666666655665555555
Q ss_pred HHHHHHHHHHHHHhhhcCChHHHHHHhchHHHHHhhccchhhhhhchhhhhhhhhhhhHhhHhhhhHHHHHHHHHHHHHH
Q 045024 256 SLLEDACKVAEANTRLAGNMSCIWKLHGDIQLTYAKCFPWAEERQSLEFDVETFSASIVSWKTTCLMAAISSKSSYQRAL 335 (1173)
Q Consensus 256 ~~l~~Al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 335 (1173)
++.|+.+..+.+...+.....+...|......++ .++|+-.|+.+.
T Consensus 316 --~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R--------------------------------~~~A~IaFR~Aq 361 (564)
T KOG1174|consen 316 --FERALNFVEKCIDSEPRNHEALILKGRLLIALER--------------------------------HTQAVIAFRTAQ 361 (564)
T ss_pred --HHHHHHHHHHHhccCcccchHHHhccHHHHhccc--------------------------------hHHHHHHHHHHH
Confidence 6777777788888888888888888888877665 568999999999
Q ss_pred hcCCCCHHHHHHHHHHHHHHhhHHHhhhhhhhhhHHHHHHHHHHHhhcCCCHHHHHHHH-Hhhc----ccHHHHHHHHHH
Q 045024 336 YLAPWQANIYTDIAITSDLIYSLNEAYGHYQSAWHVSEKMALGALLLEGDNCQFWVTLG-CLSN----YNGLKQHALIRG 410 (1173)
Q Consensus 336 ~l~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~A~k~~~~al~~~p~~~~~~~~Lg-~~~~----~~~~a~~a~~ka 410 (1173)
.+.|.+.+.|..+..+|...|++.+|. -+...+++.-|.++..+..+| .++. ...+|...++++
T Consensus 362 ~Lap~rL~~Y~GL~hsYLA~~~~kEA~-----------~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~ 430 (564)
T KOG1174|consen 362 MLAPYRLEIYRGLFHSYLAQKRFKEAN-----------ALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKS 430 (564)
T ss_pred hcchhhHHHHHHHHHHHHhhchHHHHH-----------HHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhh
Confidence 999999999999999999999999983 345677788899999999997 5554 345778889999
Q ss_pred HhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhHHHHhHHHHHHhcCCHHHHHHHHHHHHhcCCchH
Q 045024 411 LQLDVSLADAWAHIGKLYGEVGEKKLARQAFDSARSIDPSLALPWAGMSADVQASESLVDDAFESCLRAVQILPLAE 487 (1173)
Q Consensus 411 l~l~p~~~~a~~~Lg~~y~~~g~~e~A~~~f~~al~~~P~~~~a~~~l~a~~~~~~g~~~eA~~~~~~al~~~p~~~ 487 (1173)
+.++|....+-..++.++...|.++.++..+++.+...|+. ..-..+|.++...+.+++|++.|..++.++|..+
T Consensus 431 L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~--~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~ 505 (564)
T KOG1174|consen 431 LKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDV--NLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSK 505 (564)
T ss_pred hccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhcccc--HHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccch
Confidence 99999999999999999999999999999999999998886 3333378888899999999999999999999653
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.2e-16 Score=195.86 Aligned_cols=225 Identities=12% Similarity=0.002 Sum_probs=199.5
Q ss_pred CCCCHH--HHHHHHHHHHHcc--CcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc---------CCHHHHHHHHHHH
Q 045024 18 NPDDPS--LHLDLGLHLWENS--ESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFS---------IDTQRAIKCYQRA 84 (1173)
Q Consensus 18 ~P~~~~--~~~~lg~~~~~~~--~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~---------g~~~eA~~~~~~a 84 (1173)
.|.+.+ .++..|...+... +++++|+..|+++++.+|+++.++..+|.++.. . +++++|...++++
T Consensus 252 ~~~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~-~~~~g~~~~~~~~~~A~~~~~~A 330 (553)
T PRK12370 252 ELNSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPNSIAPYCALAECYLS-MAQMGIFDKQNAMIKAKEHAIKA 330 (553)
T ss_pred CCCChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH-HHHcCCcccchHHHHHHHHHHHH
Confidence 444444 3556676554332 236899999999999999999999999998774 3 3489999999999
Q ss_pred HhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 045024 85 VSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWE 164 (1173)
Q Consensus 85 l~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~ 164 (1173)
++++|+++.++..+|.++...|++++|+..|+++++++|+++.+++.+|.++...|++++|+..++++++++|.++..+.
T Consensus 331 l~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~ 410 (553)
T PRK12370 331 TELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGI 410 (553)
T ss_pred HhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988877
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHH
Q 045024 165 ALGLAYHRLGMFSAAIKSYGRAIELD-DTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLASGLLGLAK 243 (1173)
Q Consensus 165 ~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~l~~ 243 (1173)
.++.++...|++++|+..+++++... |+++.++..+|.++...|++++|...++++....|....+...++..+...|+
T Consensus 411 ~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 490 (553)
T PRK12370 411 TKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNSE 490 (553)
T ss_pred HHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccHH
Confidence 77878888999999999999999875 77888999999999999999999999999988888888888888888777664
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.77 E-value=5.1e-15 Score=159.44 Aligned_cols=458 Identities=14% Similarity=0.060 Sum_probs=307.2
Q ss_pred HHHHHHHhCCC--CHHHHHHHHHHHHHccC---cHHHHHHHHHHHHHhC--------------------CCCHHHHHHHH
Q 045024 10 QLEDSLEANPD--DPSLHLDLGLHLWENSE---SKEKAAEHFVIAAKLN--------------------PQNAVAFRYLG 64 (1173)
Q Consensus 10 ~l~~al~~~P~--~~~~~~~lg~~~~~~~~---~~~~A~~~~~~al~~~--------------------p~~~~a~~~lg 64 (1173)
.+..+...+|. .++..+.++..++...- .|..|...|..++... |.+.+..+..+
T Consensus 25 ll~Tvs~n~~~~~~~~~~yqll~yl~~~~~h~r~yr~a~~~~~~~~~~~~s~~r~s~~~~~s~~~S~~~~~~~e~~r~~a 104 (564)
T KOG1174|consen 25 LLRTVLKNDRYVATLDVEYQVLLYLLNANYKERNYRAALRHFDEIIHKRRLMMRHKNAVLVAIESSYPEFGDAEQRRRAA 104 (564)
T ss_pred HhHHHhcCCccccCchHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhHhhccccccccccccccCCCcccHHHHHHHH
Confidence 34444445554 34555666665544322 2666777777666431 33456778888
Q ss_pred HHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHH
Q 045024 65 HYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSE 144 (1173)
Q Consensus 65 ~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~ 144 (1173)
.+|.. .++-+.|+......... ...+..-..++..+-.-++..++.-.+...+...|--......+... .-+-.+.
T Consensus 105 ecy~~-~~n~~~Ai~~l~~~p~t-~r~p~inlMla~l~~~g~r~~~~vl~ykevvrecp~aL~~i~~ll~l--~v~g~e~ 180 (564)
T KOG1174|consen 105 ECYRQ-IGNTDMAIETLLQVPPT-LRSPRINLMLARLQHHGSRHKEAVLAYKEVIRECPMALQVIEALLEL--GVNGNEI 180 (564)
T ss_pred HHHHH-HccchHHHHHHhcCCcc-ccchhHHHHHHHHHhccccccHHHHhhhHHHHhcchHHHHHHHHHHH--hhcchhh
Confidence 99999 99999888876654321 13355566777777777776677777777766555322222111111 1111111
Q ss_pred HHHHHHHHHHhCCCCHHHHH---HHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 045024 145 AVQSLQHAIRGYPTSPHLWE---ALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLAL 221 (1173)
Q Consensus 145 A~~~l~~al~~~p~~~~~~~---~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al 221 (1173)
+ ..--.++...|..+..+. .++.++.....+..+..++-.-...-|++...+..+|.+++..|++++|+..|+++.
T Consensus 181 ~-S~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~ 259 (564)
T KOG1174|consen 181 N-SLVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTL 259 (564)
T ss_pred h-hhhhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHh
Confidence 1 111223445555554443 234444444444455555556666778999999999999999999999999999999
Q ss_pred hhcCCCHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHhhhcCChHHHHHHhchHHHHHhhccchhhhhhc
Q 045024 222 KISSENVSAHYGLASGLLGLAKQCINLGAFRWGASLLEDACKVAEANTRLAGNMSCIWKLHGDIQLTYAKCFPWAEERQS 301 (1173)
Q Consensus 222 ~~~p~~~~a~~~la~~~~~l~~~~~a~g~~~~A~~~l~~Al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 301 (1173)
-++|.+....-..|..+...|+ +++.-.+.
T Consensus 260 ~~dpy~i~~MD~Ya~LL~~eg~--------------~e~~~~L~------------------------------------ 289 (564)
T KOG1174|consen 260 CANPDNVEAMDLYAVLLGQEGG--------------CEQDSALM------------------------------------ 289 (564)
T ss_pred hCChhhhhhHHHHHHHHHhccC--------------HhhHHHHH------------------------------------
Confidence 9999887766556665555554 22211111
Q ss_pred hhhhhhhhhhhhHhhHhhhhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHhhhhhhhhhHHHHHHHHHHHh
Q 045024 302 LEFDVETFSASIVSWKTTCLMAAISSKSSYQRALYLAPWQANIYTDIAITSDLIYSLNEAYGHYQSAWHVSEKMALGALL 381 (1173)
Q Consensus 302 l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~A~k~~~~al~ 381 (1173)
...+........-|+--+..+...+++..|
T Consensus 290 ------------------------------~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rA-------------------- 319 (564)
T KOG1174|consen 290 ------------------------------DYLFAKVKYTASHWFVHAQLLYDEKKFERA-------------------- 319 (564)
T ss_pred ------------------------------HHHHhhhhcchhhhhhhhhhhhhhhhHHHH--------------------
Confidence 111111111222233333333322333222
Q ss_pred hcCCCHHHHHHHHHhhcccHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhHHHHhHHH
Q 045024 382 LEGDNCQFWVTLGCLSNYNGLKQHALIRGLQLDVSLADAWAHIGKLYGEVGEKKLARQAFDSARSIDPSLALPWAGMSAD 461 (1173)
Q Consensus 382 ~~p~~~~~~~~Lg~~~~~~~~a~~a~~kal~l~p~~~~a~~~Lg~~y~~~g~~e~A~~~f~~al~~~P~~~~a~~~l~a~ 461 (1173)
...-+++++.+|++..++...|.++...|+.++|+-.|+.|+.+.|..-+.+-+ +..
T Consensus 320 ----------------------L~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~G-L~h 376 (564)
T KOG1174|consen 320 ----------------------LNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRG-LFH 376 (564)
T ss_pred ----------------------HHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHH-HHH
Confidence 234567888899999999999999999999999999999999999999999999 677
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Q 045024 462 VQASESLVDDAFESCLRAVQILPL-AEFQIGLAKLAKLSGHLSSSQVFGAIQQAIQRGPHYPESHNLYGLVCEARSDYQA 540 (1173)
Q Consensus 462 ~~~~~g~~~eA~~~~~~al~~~p~-~~~~~~la~l~~~~g~~~~~~A~~~l~~al~~~P~~~~a~~~lg~i~~~~g~~~~ 540 (1173)
+|...|++.||...-+.++..-|. ......++.....-.-..-++|...+++.+.+.|.+..+-..++.++...|.+++
T Consensus 377 sYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D 456 (564)
T KOG1174|consen 377 SYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKD 456 (564)
T ss_pred HHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccch
Confidence 999999999999999998888774 3444444322111111223789999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHH
Q 045024 541 AVVSYRLARYAISSSSGTVPNSHFQDISINLARSLSRAGNALDAVRECESLERQGMLDAEVLQVY 605 (1173)
Q Consensus 541 A~~~~~kAl~l~~~~pe~~~~~~~~~~~~~La~~~~~~g~~~eAi~~~~~~~~~~p~~~~~~~~l 605 (1173)
++..+++.+.. .|+. ..+..||.++...+.+.+|.+.|..++.++|.+..++-.+
T Consensus 457 ~i~LLe~~L~~---~~D~-------~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl 511 (564)
T KOG1174|consen 457 IIKLLEKHLII---FPDV-------NLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLRGL 511 (564)
T ss_pred HHHHHHHHHhh---cccc-------HHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHHHH
Confidence 99999999633 3332 2688999999999999999999999999999998776433
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.7e-16 Score=178.70 Aligned_cols=228 Identities=21% Similarity=0.248 Sum_probs=185.2
Q ss_pred HHHHHHHHHHHHhCC---C-CHHHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHH
Q 045024 5 GALLLQLEDSLEANP---D-DPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKC 80 (1173)
Q Consensus 5 ~aAi~~l~~al~~~P---~-~~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~ 80 (1173)
+.++..+.+++...| + .+..++.+|.++...|+ +++|+..|+++++.+|+++.+++.+|.++.. .|++++|+..
T Consensus 43 e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~-~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~-~g~~~~A~~~ 120 (296)
T PRK11189 43 EVILARLNQILASRDLTDEERAQLHYERGVLYDSLGL-RALARNDFSQALALRPDMADAYNYLGIYLTQ-AGNFDAAYEA 120 (296)
T ss_pred HHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH-CCCHHHHHHH
Confidence 347899999996444 3 47789999999999987 9999999999999999999999999999999 9999999999
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 045024 81 YQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSP 160 (1173)
Q Consensus 81 ~~~al~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~ 160 (1173)
|+++++++|++..++..+|.++...|++++|+..++++++.+|+++.... ...+....+++++|+..+.+.+...+.+.
T Consensus 121 ~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~-~~~l~~~~~~~~~A~~~l~~~~~~~~~~~ 199 (296)
T PRK11189 121 FDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRAL-WLYLAESKLDPKQAKENLKQRYEKLDKEQ 199 (296)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHH-HHHHHHccCCHHHHHHHHHHHHhhCCccc
Confidence 99999999999999999999999999999999999999999999874222 12234567899999999988775543222
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHH-------HHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhcC-CCHHHHH
Q 045024 161 HLWEALGLAYHRLGMFSAAIKSYGRA-------IELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISS-ENVSAHY 232 (1173)
Q Consensus 161 ~~~~~la~~~~~~g~~~~A~~~~~~a-------l~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~ 232 (1173)
|. .+.++...|+...+ ..++.+ .++.|....+++.+|.++...|++++|+.+|+++++.+| +.++..+
T Consensus 200 --~~-~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~e~~~ 275 (296)
T PRK11189 200 --WG-WNIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFVEHRY 275 (296)
T ss_pred --cH-HHHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHHHHHH
Confidence 22 35556667776443 233333 355667788999999999999999999999999999997 5555555
Q ss_pred HHHHHHH
Q 045024 233 GLASGLL 239 (1173)
Q Consensus 233 ~la~~~~ 239 (1173)
.+.....
T Consensus 276 ~~~e~~~ 282 (296)
T PRK11189 276 ALLELAL 282 (296)
T ss_pred HHHHHHH
Confidence 4444333
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.76 E-value=5e-18 Score=190.73 Aligned_cols=265 Identities=22% Similarity=0.235 Sum_probs=117.9
Q ss_pred HhCCCCHHHHHHHHHHHHHccCcHHHHHHHHHHHH-Hh-CCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHH
Q 045024 16 EANPDDPSLHLDLGLHLWENSESKEKAAEHFVIAA-KL-NPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSV 93 (1173)
Q Consensus 16 ~~~P~~~~~~~~lg~~~~~~~~~~~~A~~~~~~al-~~-~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~ 93 (1173)
+..|+ ...+.+|.+++..|+ +++|.+.+.+.+ .. .|+++..|..+|.+... .++++.|+..|++++..++.++.
T Consensus 4 ~~~~~--~~~l~~A~~~~~~~~-~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~-~~~~~~A~~ay~~l~~~~~~~~~ 79 (280)
T PF13429_consen 4 EFGPS--EEALRLARLLYQRGD-YEKALEVLKKAAQKIAPPDDPEYWRLLADLAWS-LGDYDEAIEAYEKLLASDKANPQ 79 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccc--ccccccccccccccc-ccccccccccccccccccccccccccccccccc-ccccccccccccccccccccccc
Confidence 34555 233477999998887 999999997665 44 48899999999999999 99999999999999999999888
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHH
Q 045024 94 SGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGY--PTSPHLWEALGLAYH 171 (1173)
Q Consensus 94 a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~--p~~~~~~~~la~~~~ 171 (1173)
.+..++.+ ...+++++|+.+++++.+..+ ++..+.....++...++++++...++++.... |.++..+..+|.++.
T Consensus 80 ~~~~l~~l-~~~~~~~~A~~~~~~~~~~~~-~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~ 157 (280)
T PF13429_consen 80 DYERLIQL-LQDGDPEEALKLAEKAYERDG-DPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYE 157 (280)
T ss_dssp ----------------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHH
T ss_pred cccccccc-ccccccccccccccccccccc-ccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHH
Confidence 88888888 799999999999999887654 46667778888999999999999999977655 678889999999999
Q ss_pred HcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhhcH
Q 045024 172 RLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLASGLLGLAKQCINLGAF 251 (1173)
Q Consensus 172 ~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~l~~~~~a~g~~ 251 (1173)
+.|+.++|++.|+++++.+|++..+...++.++...|+++++.+.++...+..|+++..+..+|.++..+|+
T Consensus 158 ~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~-------- 229 (280)
T PF13429_consen 158 QLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGR-------- 229 (280)
T ss_dssp HCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT---------
T ss_pred HcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccc--------
Confidence 999999999999999999999999999999999999999999999998888888888888888888888776
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCChHHHHHHhchHHHHHhhccchhhhhhchhhhhhhhhhhhHhhHhhhhHHHHHHHHHH
Q 045024 252 RWGASLLEDACKVAEANTRLAGNMSCIWKLHGDIQLTYAKCFPWAEERQSLEFDVETFSASIVSWKTTCLMAAISSKSSY 331 (1173)
Q Consensus 252 ~~A~~~l~~Al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 331 (1173)
.++|+..|
T Consensus 230 ------------------------------------------------------------------------~~~Al~~~ 237 (280)
T PF13429_consen 230 ------------------------------------------------------------------------YEEALEYL 237 (280)
T ss_dssp ------------------------------------------------------------------------HHHHHHHH
T ss_pred ------------------------------------------------------------------------cccccccc
Confidence 34677888
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHHhhHHHhhhhhh
Q 045024 332 QRALYLAPWQANIYTDIAITSDLIYSLNEAYGHYQ 366 (1173)
Q Consensus 332 ~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~~~ 366 (1173)
+++++.+|+++.....+|.++...|+.++|.....
T Consensus 238 ~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~ 272 (280)
T PF13429_consen 238 EKALKLNPDDPLWLLAYADALEQAGRKDEALRLRR 272 (280)
T ss_dssp HHHHHHSTT-HHHHHHHHHHHT-------------
T ss_pred ccccccccccccccccccccccccccccccccccc
Confidence 88999999999999999999999999999966543
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.4e-15 Score=177.90 Aligned_cols=201 Identities=10% Similarity=0.029 Sum_probs=125.3
Q ss_pred HHHHHHHHHccCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCH-HHHHHHHHHHHH
Q 045024 26 LDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDS-VSGEALCELLEH 104 (1173)
Q Consensus 26 ~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~-~a~~~La~~~~~ 104 (1173)
...|...+..|+ ++.|.+.+.++.+..|+....+...|.++.. .|++++|..++.++.+..|++. .+....+.++..
T Consensus 88 ~~~glla~~~g~-~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~-~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~ 165 (409)
T TIGR00540 88 TEEALLKLAEGD-YAKAEKLIAKNADHAAEPVLNLIKAAEAAQQ-RGDEARANQHLEEAAELAGNDNILVEIARTRILLA 165 (409)
T ss_pred HHHHHHHHhCCC-HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHH
Confidence 344555555555 6777777777666666666666666677666 7777777777777766666664 345555666777
Q ss_pred CCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH----HHHHHHHHcCCHHHHH
Q 045024 105 GGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWE----ALGLAYHRLGMFSAAI 180 (1173)
Q Consensus 105 ~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~----~la~~~~~~g~~~~A~ 180 (1173)
.|+++.|...++++.+..|+++.++..++.++...|++++|.+.+.+..+....++.... ....-+...+..+++.
T Consensus 166 ~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~ 245 (409)
T TIGR00540 166 QNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGI 245 (409)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCH
Confidence 777777777777777777777777777777777777777777777666665443333221 1111123333444445
Q ss_pred HHHHHHHHhCC----CChHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCH
Q 045024 181 KSYGRAIELDD----TSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENV 228 (1173)
Q Consensus 181 ~~~~~al~~~p----~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 228 (1173)
+.+.++.+..| +++..+..++..+...|++++|.+.++++++..|++.
T Consensus 246 ~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~ 297 (409)
T TIGR00540 246 DGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDR 297 (409)
T ss_pred HHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcc
Confidence 56666666555 3666666677777777777777777777776666654
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.75 E-value=5.9e-14 Score=159.98 Aligned_cols=473 Identities=15% Similarity=0.098 Sum_probs=293.0
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHc
Q 045024 60 FRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHH 139 (1173)
Q Consensus 60 ~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~ 139 (1173)
++..+.-.+. .++|...++..+..++..|++++..-..|..+...|+-++|....+.++..++.+...|..+|.++...
T Consensus 10 lF~~~lk~yE-~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~d 88 (700)
T KOG1156|consen 10 LFRRALKCYE-TKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSD 88 (700)
T ss_pred HHHHHHHHHH-HHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhh
Confidence 3333444445 588888888888888888999888888888888899999999999999998888889999999999999
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHH
Q 045024 140 KKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQL 219 (1173)
Q Consensus 140 g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~ 219 (1173)
++|++|+.+|+.|+.+.|+|...+..++.+..++|+++.....-.+.++..|.....|...+..+...|++..|....+.
T Consensus 89 K~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~e 168 (700)
T KOG1156|consen 89 KKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEE 168 (700)
T ss_pred hhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999888899999999988999999999999999999888887
Q ss_pred HHhhcCCCHH-HHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHhhhcCChHHHHHHhchHHHHHhhccchhhh
Q 045024 220 ALKISSENVS-AHYGLASGLLGLAKQCINLGAFRWGASLLEDACKVAEANTRLAGNMSCIWKLHGDIQLTYAKCFPWAEE 298 (1173)
Q Consensus 220 al~~~p~~~~-a~~~la~~~~~l~~~~~a~g~~~~A~~~l~~Al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 298 (1173)
..+.....++ -.+....+.+.........|.++++.+.+.+-....-+-. ......
T Consensus 169 f~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkl-------a~~e~k---------------- 225 (700)
T KOG1156|consen 169 FEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKL-------AFEETK---------------- 225 (700)
T ss_pred HHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHH-------HHhhhH----------------
Confidence 7665421111 1123333444444445555555555444333222111111 111111
Q ss_pred hhchhhhhhhhhhhhHhhHhhhhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHhhhhhhhhhHHHHHHHHH
Q 045024 299 RQSLEFDVETFSASIVSWKTTCLMAAISSKSSYQRALYLAPWQANIYTDIAITSDLIYSLNEAYGHYQSAWHVSEKMALG 378 (1173)
Q Consensus 299 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~A~k~~~~ 378 (1173)
......++..++|...|...+..+|++...+..+-.++....+.-++. ..++..
T Consensus 226 ----------------a~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~l----------k~ly~~ 279 (700)
T KOG1156|consen 226 ----------------ADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEAL----------KALYAI 279 (700)
T ss_pred ----------------HHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHH----------HHHHHH
Confidence 122233455779999999999999999888877776664111111111 011222
Q ss_pred HHhhcCCCHHHHHHHHHhhcccHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHcCCH---HHHHHHHHHHHhh------
Q 045024 379 ALLLEGDNCQFWVTLGCLSNYNGLKQHALIRGLQ--LDVSLADAWAHIGKLYGEVGEK---KLARQAFDSARSI------ 447 (1173)
Q Consensus 379 al~~~p~~~~~~~~Lg~~~~~~~~a~~a~~kal~--l~p~~~~a~~~Lg~~y~~~g~~---e~A~~~f~~al~~------ 447 (1173)
.-+..| .......++....+...-...+.+.+. +..+-|.+...+-.+|..-... ++=+..|...++-
T Consensus 280 ls~~y~-r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~ 358 (700)
T KOG1156|consen 280 LSEKYP-RHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNF 358 (700)
T ss_pred HhhcCc-ccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCc
Confidence 212222 212222222111111111112222211 1111222233333332221100 0000111111110
Q ss_pred ------CCCChhHHHHh-HHHHHHhcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCC
Q 045024 448 ------DPSLALPWAGM-SADVQASESLVDDAFESCLRAVQILPLAEFQIGLAKLAKLSGHLSSSQVFGAIQQAIQRGPH 520 (1173)
Q Consensus 448 ------~P~~~~a~~~l-~a~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~la~l~~~~g~~~~~~A~~~l~~al~~~P~ 520 (1173)
.|-....|... ++.-+-..|+++ .|...++.++...|.
T Consensus 359 ~D~~~~E~PttllWt~y~laqh~D~~g~~~-----------------------------------~A~~yId~AIdHTPT 403 (700)
T KOG1156|consen 359 LDDGKQEPPTTLLWTLYFLAQHYDKLGDYE-----------------------------------VALEYIDLAIDHTPT 403 (700)
T ss_pred ccccccCCchHHHHHHHHHHHHHHHcccHH-----------------------------------HHHHHHHHHhccCch
Confidence 12222223221 222333444444 555566666666688
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC--
Q 045024 521 YPESHNLYGLVCEARSDYQAAVVSYRLARYAISSSSGTVPNSHFQDISINLARSLSRAGNALDAVRECESLERQGMLD-- 598 (1173)
Q Consensus 521 ~~~a~~~lg~i~~~~g~~~~A~~~~~kAl~l~~~~pe~~~~~~~~~~~~~La~~~~~~g~~~eAi~~~~~~~~~~p~~-- 598 (1173)
.++.+...|.|+...|+.++|...++.+.++ +.. . ..+...-|....+.++.++|.+++.+.-+.+..-
T Consensus 404 liEly~~KaRI~kH~G~l~eAa~~l~ea~el---D~a----D--R~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~ 474 (700)
T KOG1156|consen 404 LIELYLVKARIFKHAGLLDEAAAWLDEAQEL---DTA----D--RAINSKCAKYMLRANEIEEAEEVLSKFTREGFGAVN 474 (700)
T ss_pred HHHHHHHHHHHHHhcCChHHHHHHHHHHHhc---cch----h--HHHHHHHHHHHHHccccHHHHHHHHHhhhcccchhh
Confidence 8888999999999999999999999988543 110 1 1133356888889999999999998886665321
Q ss_pred ----H-HHH--HHHHHHHHHcCChHHHHHHHHHHhh
Q 045024 599 ----A-EVL--QVYAFSLWQLGKYDLALSMARNLAS 627 (1173)
Q Consensus 599 ----~-~~~--~~la~a~~~~g~~~eA~~~~~~aL~ 627 (1173)
. ..| .--|.+|.++|++.+|+.-|..+-.
T Consensus 475 ~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~k 510 (700)
T KOG1156|consen 475 NLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIEK 510 (700)
T ss_pred hHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHHH
Confidence 1 133 3357889999999999988876644
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.3e-15 Score=176.64 Aligned_cols=299 Identities=12% Similarity=-0.014 Sum_probs=222.3
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHc
Q 045024 95 GEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSP-HLWEALGLAYHRL 173 (1173)
Q Consensus 95 ~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~-~~~~~la~~~~~~ 173 (1173)
....|.+....|+++.|.+.+.++.+..|+....+...|.++..+|+++.|..++.++.+..|++. .+....+.++...
T Consensus 87 ~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~ 166 (409)
T TIGR00540 87 QTEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQ 166 (409)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHC
Confidence 355566777889999999999998888888878888888999999999999999999988888774 4666678899999
Q ss_pred CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhhcHHH
Q 045024 174 GMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLASGLLGLAKQCINLGAFRW 253 (1173)
Q Consensus 174 g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~l~~~~~a~g~~~~ 253 (1173)
|++++|...+++.++..|+++.++..++.++...|++++|.+.+.+..+....++.....+- .....+. +..
T Consensus 167 ~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~-~~a~~~~-------l~~ 238 (409)
T TIGR00540 167 NELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLE-QKAEIGL-------LDE 238 (409)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHH-HHHHHHH-------HHH
Confidence 99999999999999999999999999999999999999999999988877544443221110 0111111 000
Q ss_pred HHHHHHHHHHHHHHHhhhcCChHHHHHHhchHHHHHhhccchhhhhhchhhhhhhhhhhhHhhHhhhhHHHHHHHHHHHH
Q 045024 254 GASLLEDACKVAEANTRLAGNMSCIWKLHGDIQLTYAKCFPWAEERQSLEFDVETFSASIVSWKTTCLMAAISSKSSYQR 333 (1173)
Q Consensus 254 A~~~l~~Al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 333 (1173)
+ ..+++...+.+
T Consensus 239 ~--------------------------------------------------------------------~~~~~~~~L~~ 250 (409)
T TIGR00540 239 A--------------------------------------------------------------------MADEGIDGLLN 250 (409)
T ss_pred H--------------------------------------------------------------------HHhcCHHHHHH
Confidence 0 00112233444
Q ss_pred HHhcCC----CCHHHHHHHHHHHHHHhhHHHhhhhhhhhhHHHHHHHHHHHhhcCCCHH----HHHHHHHhhc-ccHHHH
Q 045024 334 ALYLAP----WQANIYTDIAITSDLIYSLNEAYGHYQSAWHVSEKMALGALLLEGDNCQ----FWVTLGCLSN-YNGLKQ 404 (1173)
Q Consensus 334 al~l~p----~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~A~k~~~~al~~~p~~~~----~~~~Lg~~~~-~~~~a~ 404 (1173)
+.+..| +++.++..++..+...|++++| .+.+.++++..|++.. .+...+.+.. +...+.
T Consensus 251 ~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A-----------~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~ 319 (409)
T TIGR00540 251 WWKNQPRHRRHNIALKIALAEHLIDCDDHDSA-----------QEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLE 319 (409)
T ss_pred HHHHCCHHHhCCHHHHHHHHHHHHHCCChHHH-----------HHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHH
Confidence 444444 4777777888888877777777 4446677777777764 2222222221 345667
Q ss_pred HHHHHHHhcCCCcH--HHHHHHHHHHHHcCCHHHHHHHHH--HHHhhCCCChhHHHHhHHHHHHhcCCHHHHHHHHHHHH
Q 045024 405 HALIRGLQLDVSLA--DAWAHIGKLYGEVGEKKLARQAFD--SARSIDPSLALPWAGMSADVQASESLVDDAFESCLRAV 480 (1173)
Q Consensus 405 ~a~~kal~l~p~~~--~a~~~Lg~~y~~~g~~e~A~~~f~--~al~~~P~~~~a~~~l~a~~~~~~g~~~eA~~~~~~al 480 (1173)
+.++++++.+|+++ .....+|.++.+.|++++|.++|+ ++++.+|+... +.. ++.++.+.|+.++|.++|++++
T Consensus 320 ~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~-~~~-La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 320 KLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAND-LAM-AADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred HHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH-HHH-HHHHHHHcCCHHHHHHHHHHHH
Confidence 88999999999999 889999999999999999999999 57778898765 445 6789999999999999999886
Q ss_pred hc
Q 045024 481 QI 482 (1173)
Q Consensus 481 ~~ 482 (1173)
..
T Consensus 398 ~~ 399 (409)
T TIGR00540 398 GL 399 (409)
T ss_pred HH
Confidence 54
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.3e-17 Score=187.33 Aligned_cols=248 Identities=17% Similarity=0.156 Sum_probs=124.6
Q ss_pred HHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHH
Q 045024 5 GALLLQLEDSLEA--NPDDPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQ 82 (1173)
Q Consensus 5 ~aAi~~l~~al~~--~P~~~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~ 82 (1173)
.+|++.+.+.+.. +|+++..|..+|.+....++ +++|+..|++++..++.++..+..++.+ .. .+++++|...++
T Consensus 25 ~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~-~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~-~~~~~~A~~~~~ 101 (280)
T PF13429_consen 25 EKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGD-YDEAIEAYEKLLASDKANPQDYERLIQL-LQ-DGDPEEALKLAE 101 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccc-cccccccccccccccccccccccccccc-cc-cccccccccccc
Confidence 4468999765544 48899999999999988887 9999999999999999999998888888 67 899999999999
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 045024 83 RAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKS--PRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSP 160 (1173)
Q Consensus 83 ~al~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~ 160 (1173)
++.+..+ ++..+..+..++...|+++++...++++.... +.++..|..+|.++.+.|++++|+..|+++++.+|+++
T Consensus 102 ~~~~~~~-~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~ 180 (280)
T PF13429_consen 102 KAYERDG-DPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDP 180 (280)
T ss_dssp -----------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-H
T ss_pred ccccccc-ccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH
Confidence 9988664 56777788889999999999999999987655 67889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCHHHHHHHHHHHHH
Q 045024 161 HLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLASGLLG 240 (1173)
Q Consensus 161 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~ 240 (1173)
.+...++.++...|+++++.+.++...+..|+++..+..+|.++..+|++++|+.+|+++++.+|+++.....+|.++..
T Consensus 181 ~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~ 260 (280)
T PF13429_consen 181 DARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQ 260 (280)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT-
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccccccccccccccccccc
Confidence 99999999999999999999999999988899999999999999999999999999999999999999999999999988
Q ss_pred HHHHHHHhhcHHHHHHHHHHHHH
Q 045024 241 LAKQCINLGAFRWGASLLEDACK 263 (1173)
Q Consensus 241 l~~~~~a~g~~~~A~~~l~~Al~ 263 (1173)
.|+ .++|..++.++.+
T Consensus 261 ~g~-------~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 261 AGR-------KDEALRLRRQALR 276 (280)
T ss_dssp -----------------------
T ss_pred ccc-------ccccccccccccc
Confidence 877 6666665555544
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.74 E-value=9e-16 Score=166.52 Aligned_cols=203 Identities=19% Similarity=0.227 Sum_probs=184.7
Q ss_pred CHHHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 045024 21 DPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCE 100 (1173)
Q Consensus 21 ~~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~ 100 (1173)
.+..++.+|..+...++ +++|+..++++++.+|++..++..+|.++.. .|++++|+..|+++++..|.+..++..+|.
T Consensus 30 ~~~~~~~la~~~~~~~~-~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 107 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGD-LEVAKENLDKALEHDPDDYLAYLALALYYQQ-LGELEKAEDSFRRALTLNPNNGDVLNNYGT 107 (234)
T ss_pred HHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCcccHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Confidence 46788999999998887 9999999999999999999999999999999 999999999999999999999999999999
Q ss_pred HHHHCCCHHHHHHHHHHHHhhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Q 045024 101 LLEHGGKESLEVVVCREASDKS--PRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSA 178 (1173)
Q Consensus 101 ~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~ 178 (1173)
++...|++++|+..+++++... |.....+..+|.++...|++++|...+++++..+|+++..+..+|.++...|++++
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHH
Confidence 9999999999999999998753 45567888899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhcC
Q 045024 179 AIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISS 225 (1173)
Q Consensus 179 A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p 225 (1173)
|+..++++++..|.++..+..++.++...|+.++|..+.+.+....|
T Consensus 188 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 234 (234)
T TIGR02521 188 ARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKLFP 234 (234)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhCc
Confidence 99999999999888888888899999999999999998887766543
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.72 E-value=2e-15 Score=152.46 Aligned_cols=207 Identities=17% Similarity=0.156 Sum_probs=191.6
Q ss_pred HHHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 045024 22 PSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCEL 101 (1173)
Q Consensus 22 ~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~~ 101 (1173)
..+...+|.-|++.|+ +..|...++++++.+|++..+|..++.+|.. .|+.+.|.+.|++|+.++|++.+++.+.|..
T Consensus 35 a~arlqLal~YL~~gd-~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~-~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~F 112 (250)
T COG3063 35 AKARLQLALGYLQQGD-YAQAKKNLEKALEHDPSYYLAHLVRAHYYQK-LGENDLADESYRKALSLAPNNGDVLNNYGAF 112 (250)
T ss_pred HHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCcccHHHHHHHHHHHHH-cCChhhHHHHHHHHHhcCCCccchhhhhhHH
Confidence 4678899999999998 9999999999999999999999999999999 9999999999999999999999999999999
Q ss_pred HHHCCCHHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Q 045024 102 LEHGGKESLEVVVCREASDK--SPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAA 179 (1173)
Q Consensus 102 ~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A 179 (1173)
+..+|++++|...|++++.. .|..+.++.++|.|..+.|+++.|..+|+++++.+|+++.....++..++..|+|..|
T Consensus 113 LC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~A 192 (250)
T COG3063 113 LCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPA 192 (250)
T ss_pred HHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHH
Confidence 99999999999999999875 2346788999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCHHH
Q 045024 180 IKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSA 230 (1173)
Q Consensus 180 ~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a 230 (1173)
...+++.....+.....+.....+-...|+-+.+-.+=.+.....|...+.
T Consensus 193 r~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e~ 243 (250)
T COG3063 193 RLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEEY 243 (250)
T ss_pred HHHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHH
Confidence 999999998888888888888889999999999888888888888887654
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.71 E-value=3.5e-16 Score=176.53 Aligned_cols=254 Identities=19% Similarity=0.247 Sum_probs=211.6
Q ss_pred HHHHHHHHHccCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHC
Q 045024 26 LDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHG 105 (1173)
Q Consensus 26 ~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~~ 105 (1173)
+..|..+++.|+ ..+|+-.|+.+++.+|.+.++|..||.+... .++-..|+..++++++++|++..++..||..|...
T Consensus 289 f~eG~~lm~nG~-L~~A~LafEAAVkqdP~haeAW~~LG~~qaE-NE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNe 366 (579)
T KOG1125|consen 289 FKEGCNLMKNGD-LSEAALAFEAAVKQDPQHAEAWQKLGITQAE-NENEQNAISALRRCLELDPTNLEALMALAVSYTNE 366 (579)
T ss_pred HHHHHHHHhcCC-chHHHHHHHHHHhhChHHHHHHHHhhhHhhh-ccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhh
Confidence 678999999998 9999999999999999999999999999999 99999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhhCCCcHHHHHH-------HHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCH
Q 045024 106 GKESLEVVVCREASDKSPRAFWAFRR-------LGYLQLHHKKWSEAVQSLQHAIRGYP--TSPHLWEALGLAYHRLGMF 176 (1173)
Q Consensus 106 g~~~~A~~~~~~al~~~p~~~~a~~~-------la~~~~~~g~~~~A~~~l~~al~~~p--~~~~~~~~la~~~~~~g~~ 176 (1173)
|.-.+|+.++.+-+...|........ ...-......+..-.+.|-.+....| .++++...||.+|...|+|
T Consensus 367 g~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~ef 446 (579)
T KOG1125|consen 367 GLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEF 446 (579)
T ss_pred hhHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHH
Confidence 99999999999999887753211110 00011111224455677777878888 7899999999999999999
Q ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhhcHHHHHH
Q 045024 177 SAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLASGLLGLAKQCINLGAFRWGAS 256 (1173)
Q Consensus 177 ~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~l~~~~~a~g~~~~A~~ 256 (1173)
++|+.+|+.+|...|++...|..||-.+..-.+.++|+..|++++++.|....+++++|..++.+|. |++|..
T Consensus 447 draiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~-------ykEA~~ 519 (579)
T KOG1125|consen 447 DRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGA-------YKEAVK 519 (579)
T ss_pred HHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhh-------HHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999998777 777777
Q ss_pred HHHHHHHHHHHHhhhcC---ChHHHHHHhchHHHH
Q 045024 257 LLEDACKVAEANTRLAG---NMSCIWKLHGDIQLT 288 (1173)
Q Consensus 257 ~l~~Al~~~~~~~~~~~---~~~~~~~~~g~~~~~ 288 (1173)
+|-.|+..-++...-.. ....+|..+..+...
T Consensus 520 hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~ 554 (579)
T KOG1125|consen 520 HLLEALSMQRKSRNHNKAPMASENIWQTLRLALSA 554 (579)
T ss_pred HHHHHHHhhhcccccccCCcchHHHHHHHHHHHHH
Confidence 77777776665322111 123456555544433
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=4.5e-14 Score=166.07 Aligned_cols=75 Identities=20% Similarity=0.175 Sum_probs=56.7
Q ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhHHHHhHHHHHHhcCCHHHHHHHHHHHHhc
Q 045024 406 ALIRGLQLDVSLADAWAHIGKLYGEVGEKKLARQAFDSARSIDPSLALPWAGMSADVQASESLVDDAFESCLRAVQI 482 (1173)
Q Consensus 406 a~~kal~l~p~~~~a~~~Lg~~y~~~g~~e~A~~~f~~al~~~P~~~~a~~~l~a~~~~~~g~~~eA~~~~~~al~~ 482 (1173)
..++.++..|+++..+..+|.++...|++++|.++|+++++..|++.. +.. ++.++.+.|+.++|.++|++++.+
T Consensus 316 ~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~-~~~-La~~~~~~g~~~~A~~~~~~~l~~ 390 (398)
T PRK10747 316 VLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYD-YAW-LADALDRLHKPEEAAAMRRDGLML 390 (398)
T ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHH-HHH-HHHHHHHcCCHHHHHHHHHHHHhh
Confidence 344555667778888888888888888888888888888888888644 223 566788888888888888888765
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.69 E-value=8.5e-15 Score=158.83 Aligned_cols=197 Identities=19% Similarity=0.175 Sum_probs=178.3
Q ss_pred CHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q 045024 56 NAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYL 135 (1173)
Q Consensus 56 ~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~ 135 (1173)
.+..+..+|..+.. .|++++|+..++++++.+|++..++..+|.++...|++++|+..++++++..|.+..++..+|.+
T Consensus 30 ~~~~~~~la~~~~~-~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 108 (234)
T TIGR02521 30 AAKIRVQLALGYLE-QGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Confidence 46889999999999 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHH
Q 045024 136 QLHHKKWSEAVQSLQHAIRGY--PTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKG 213 (1173)
Q Consensus 136 ~~~~g~~~~A~~~l~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A 213 (1173)
+...|++++|+..+++++... |.....+..+|.++...|++++|...++++++.+|++..++..+|.++...|++++|
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHH
Confidence 999999999999999999854 456778999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHH
Q 045024 214 VEQFQLALKISSENVSAHYGLASGLLGLAKQCINLGAFRWGASLLED 260 (1173)
Q Consensus 214 ~~~~~~al~~~p~~~~a~~~la~~~~~l~~~~~a~g~~~~A~~~l~~ 260 (1173)
...+++++...|.++..+..++.++...|+ .++|..+.+.
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~a~~~~~~ 228 (234)
T TIGR02521 189 RAYLERYQQTYNQTAESLWLGIRIARALGD-------VAAAQRYGAQ 228 (234)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHhh-------HHHHHHHHHH
Confidence 999999999988887777666666655554 5555544433
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=4.9e-14 Score=165.81 Aligned_cols=82 Identities=10% Similarity=0.007 Sum_probs=41.0
Q ss_pred CCHHHHHHHHHHHHhhCCCChhHHHHhHHHHHHhcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCCChHHHHHHH
Q 045024 432 GEKKLARQAFDSARSIDPSLALPWAGMSADVQASESLVDDAFESCLRAVQILPLAEFQIGLAKLAKLSGHLSSSQVFGAI 511 (1173)
Q Consensus 432 g~~e~A~~~f~~al~~~P~~~~a~~~l~a~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~la~l~~~~g~~~~~~A~~~l 511 (1173)
++++++++..++.++.+|+++..++. .|.++...|++++|.+.|+++++..|+...+..++.+....|+ .++|...+
T Consensus 308 ~~~~~al~~~e~~lk~~P~~~~l~l~-lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~--~~~A~~~~ 384 (398)
T PRK10747 308 NNPEQLEKVLRQQIKQHGDTPLLWST-LGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHK--PEEAAAMR 384 (398)
T ss_pred CChHHHHHHHHHHHhhCCCCHHHHHH-HHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCC--HHHHHHHH
Confidence 45555555555555555555544444 3444445555555555555555555554444444444444444 34455555
Q ss_pred HHHHH
Q 045024 512 QQAIQ 516 (1173)
Q Consensus 512 ~~al~ 516 (1173)
++.+.
T Consensus 385 ~~~l~ 389 (398)
T PRK10747 385 RDGLM 389 (398)
T ss_pred HHHHh
Confidence 55444
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=9e-15 Score=164.78 Aligned_cols=177 Identities=14% Similarity=0.012 Sum_probs=134.8
Q ss_pred HHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHH
Q 045024 39 KEKAAEHFVIAAKLNP----QNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVV 114 (1173)
Q Consensus 39 ~~~A~~~~~~al~~~p----~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~~g~~~~A~~~ 114 (1173)
.+.++..+.+++...| ..+..++.+|.++.. .|++++|+..|+++++++|+++.++..+|.++...|++++|+..
T Consensus 42 ~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~-~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~ 120 (296)
T PRK11189 42 QEVILARLNQILASRDLTDEERAQLHYERGVLYDS-LGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEA 120 (296)
T ss_pred HHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 5788888888885433 236778889999998 99999999999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Q 045024 115 CREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSI 194 (1173)
Q Consensus 115 ~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 194 (1173)
|+++++++|++..++..+|.++...|++++|+..++++++.+|+++.... ...+....+++++|+..+++.+...+...
T Consensus 121 ~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~-~~~l~~~~~~~~~A~~~l~~~~~~~~~~~ 199 (296)
T PRK11189 121 FDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRAL-WLYLAESKLDPKQAKENLKQRYEKLDKEQ 199 (296)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHH-HHHHHHccCCHHHHHHHHHHHHhhCCccc
Confidence 99999999998888889999998899999999999999998888874222 12234556788899988877665433222
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHH
Q 045024 195 FPLLESGNIFLMLGNFRKGVEQFQLAL 221 (1173)
Q Consensus 195 ~a~~~la~~~~~~g~~~~A~~~~~~al 221 (1173)
+. .+.++...|+..++ ..++.+.
T Consensus 200 --~~-~~~~~~~lg~~~~~-~~~~~~~ 222 (296)
T PRK11189 200 --WG-WNIVEFYLGKISEE-TLMERLK 222 (296)
T ss_pred --cH-HHHHHHHccCCCHH-HHHHHHH
Confidence 21 35555667776554 3444444
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.6e-10 Score=131.53 Aligned_cols=608 Identities=12% Similarity=0.070 Sum_probs=385.2
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-------cCCHHHHHHHHHH
Q 045024 11 LEDSLEANPDDPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRF-------SIDTQRAIKCYQR 83 (1173)
Q Consensus 11 l~~al~~~P~~~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~-------~g~~~eA~~~~~~ 83 (1173)
|+.-+..+|.+...|...-.... +.-..+-...|+++++.-|.+...|+..-..-... ...|+.--.+|++
T Consensus 16 fEeEilRnp~svk~W~RYIe~k~--~sp~k~~~~lYERal~~lp~sykiW~~YL~~R~~~vk~~~~T~~~~~~vn~c~er 93 (835)
T KOG2047|consen 16 FEEEILRNPFSVKCWLRYIEHKA--GSPDKQRNLLYERALKELPGSYKIWYDYLKARRAQVKHLCPTDPAYESVNNCFER 93 (835)
T ss_pred hHHHHHcCchhHHHHHHHHHHHc--cCChHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHH
Confidence 55666678888888876665443 33236677788999999999888887665433320 1235556667777
Q ss_pred HHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCC--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 045024 84 AVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPR--AFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPH 161 (1173)
Q Consensus 84 al~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~--~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~ 161 (1173)
++-.--+-+..|.........+|+...-...|.+++..-|- +...|-..-......+-.+-++..|++.++.+|...
T Consensus 94 ~lv~mHkmpRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~- 172 (835)
T KOG2047|consen 94 CLVFMHKMPRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEAR- 172 (835)
T ss_pred HHHHHhcCCHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHH-
Confidence 77766677888999999999999999999999999888774 345555555556677778899999999999988764
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCChHHHHHHHHHHHHcCChHHH---HHHHHHHHhhcCCCHHHH
Q 045024 162 LWEALGLAYHRLGMFSAAIKSYGRAIELD-------DTSIFPLLESGNIFLMLGNFRKG---VEQFQLALKISSENVSAH 231 (1173)
Q Consensus 162 ~~~~la~~~~~~g~~~~A~~~~~~al~~~-------p~~~~a~~~la~~~~~~g~~~~A---~~~~~~al~~~p~~~~a~ 231 (1173)
......+...++.++|.+.+...+..+ +.+...|..+..+..+.-+.-.. -..++..+...++
T Consensus 173 --eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftD----- 245 (835)
T KOG2047|consen 173 --EEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTD----- 245 (835)
T ss_pred --HHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcH-----
Confidence 344566778899999999988877543 44566677776666554333222 2344555555554
Q ss_pred HHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHhhhcCChHHHHHHhchHHHH-----Hh--hccc-hhhhhhchh
Q 045024 232 YGLASGLLGLAKQCINLGAFRWGASLLEDACKVAEANTRLAGNMSCIWKLHGDIQLT-----YA--KCFP-WAEERQSLE 303 (1173)
Q Consensus 232 ~~la~~~~~l~~~~~a~g~~~~A~~~l~~Al~~~~~~~~~~~~~~~~~~~~g~~~~~-----~~--~~~~-~~~~~~~l~ 303 (1173)
.+|.....+++++...|.|++|.+.|++++......... ..++.....+... +. .... -.+...++.
T Consensus 246 -q~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDF----t~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~ 320 (835)
T KOG2047|consen 246 -QLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDF----TQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLE 320 (835)
T ss_pred -HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhH----HHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHH
Confidence 345556666667777777888888888887754332211 1111111111110 00 0000 000000111
Q ss_pred hhhhhhh-------------------hhhHhhHh---hhhHHHHHHHHHHHHHHh-cCCC-----CHHHHHHHHHHHHHH
Q 045024 304 FDVETFS-------------------ASIVSWKT---TCLMAAISSKSSYQRALY-LAPW-----QANIYTDIAITSDLI 355 (1173)
Q Consensus 304 ~~~~~~~-------------------~~~~~~~~---~~~~~~~~A~~~~~~al~-l~p~-----~~~~~~~la~~~~~~ 355 (1173)
.....+. ..+..|.. ...++..+-+..|.+++. .+|. -...|...|..|...
T Consensus 321 ~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~ 400 (835)
T KOG2047|consen 321 LHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENN 400 (835)
T ss_pred HHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhc
Confidence 1111110 01111111 112345667778888774 4554 235789999999999
Q ss_pred hhHHHhhhhhhhhhHHHHHHHHHHHhhcCCC----HHHHHHHHHhhc---ccHHHHHHHHHHHhcCC-------------
Q 045024 356 YSLNEAYGHYQSAWHVSEKMALGALLLEGDN----CQFWVTLGCLSN---YNGLKQHALIRGLQLDV------------- 415 (1173)
Q Consensus 356 g~~~eA~~~~~~~~~~A~k~~~~al~~~p~~----~~~~~~Lg~~~~---~~~~a~~a~~kal~l~p------------- 415 (1173)
|+.+.|. ..+.++++..=.. ...|..-|.... +.+.|....+++.....
T Consensus 401 ~~l~~aR-----------vifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pv 469 (835)
T KOG2047|consen 401 GDLDDAR-----------VIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPV 469 (835)
T ss_pred CcHHHHH-----------HHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcH
Confidence 9888884 3445555543222 455655554444 33344455555543211
Q ss_pred -----CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhHHHHhHHHHHHhcCCHHHHHHHHHHHHhcCCch---H
Q 045024 416 -----SLADAWAHIGKLYGEVGEKKLARQAFDSARSIDPSLALPWAGMSADVQASESLVDDAFESCLRAVQILPLA---E 487 (1173)
Q Consensus 416 -----~~~~a~~~Lg~~y~~~g~~e~A~~~f~~al~~~P~~~~a~~~l~a~~~~~~g~~~eA~~~~~~al~~~p~~---~ 487 (1173)
++..+|..++++....|-++.-...|++.+.+.--.|....+ -+..+....-++++.+.|++.+.+.+-| +
T Consensus 470 Q~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~N-yAmfLEeh~yfeesFk~YErgI~LFk~p~v~d 548 (835)
T KOG2047|consen 470 QARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIIN-YAMFLEEHKYFEESFKAYERGISLFKWPNVYD 548 (835)
T ss_pred HHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHH-HHHHHHhhHHHHHHHHHHHcCCccCCCccHHH
Confidence 145689999999999999999999999999997777777777 4557777888999999999999997744 3
Q ss_pred HHH-HHHHHHHHhCCCChHHHHHHHHHHHHhCCC-C-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCCCCCCCch
Q 045024 488 FQI-GLAKLAKLSGHLSSSQVFGAIQQAIQRGPH-Y-PESHNLYGLVCEARSDYQAAVVSYRLARYAISSSSGTVPNSHF 564 (1173)
Q Consensus 488 ~~~-~la~l~~~~g~~~~~~A~~~l~~al~~~P~-~-~~a~~~lg~i~~~~g~~~~A~~~~~kAl~l~~~~pe~~~~~~~ 564 (1173)
.+. -+..+-.+-|....+.|...|+++++..|. + -..+...+.+-+.-|--..|+.+|++|...... .
T Consensus 549 iW~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~-------a-- 619 (835)
T KOG2047|consen 549 IWNTYLTKFIKRYGGTKLERARDLFEQALDGCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKE-------A-- 619 (835)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCH-------H--
Confidence 332 345555667777788999999999999885 2 235567788888999999999999998432211 1
Q ss_pred HHHHHHHHHHHHhc----CCHHHHHHHHHHHHHcCCCCH--HHHHHHHHHHHHcCChHHHHHHHHHHhhhccccccchhh
Q 045024 565 QDISINLARSLSRA----GNALDAVRECESLERQGMLDA--EVLQVYAFSLWQLGKYDLALSMARNLASSVSAMEQSSAA 638 (1173)
Q Consensus 565 ~~~~~~La~~~~~~----g~~~eAi~~~~~~~~~~p~~~--~~~~~la~a~~~~g~~~eA~~~~~~aL~~~p~~~~~~~~ 638 (1173)
-.+.+=++|.+. =-...-...|+++++.-|++. ..-+..+..-.+.|..+.|...|.-.-+..+.... +
T Consensus 620 --~~l~myni~I~kaae~yGv~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~---~ 694 (835)
T KOG2047|consen 620 --QRLDMYNIYIKKAAEIYGVPRTREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVT---T 694 (835)
T ss_pred --HHHHHHHHHHHHHHHHhCCcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCC---h
Confidence 122222333221 113345567888887766653 34567789999999999999999988776552221 1
Q ss_pred hhHHHHHHHHHHhcChhhhhH
Q 045024 639 ASVSFICRLLYHISGLDSTIN 659 (1173)
Q Consensus 639 ~~~~~la~l~~~~g~~~~A~~ 659 (1173)
+-.-..-..-.+.|+.+.-++
T Consensus 695 ~fW~twk~FEvrHGnedT~ke 715 (835)
T KOG2047|consen 695 EFWDTWKEFEVRHGNEDTYKE 715 (835)
T ss_pred HHHHHHHHHHHhcCCHHHHHH
Confidence 222222233445566554443
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.67 E-value=8.1e-16 Score=160.86 Aligned_cols=238 Identities=16% Similarity=0.132 Sum_probs=216.4
Q ss_pred HHHHHHHHHHccCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 045024 25 HLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEH 104 (1173)
Q Consensus 25 ~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~ 104 (1173)
-..+|.+|+..|- +.+|.+.|+.+++..|- ++.+..++.+|.+ ..+...|+..|.+.++..|.+...+..+++++..
T Consensus 226 k~Q~gkCylrLgm-~r~AekqlqssL~q~~~-~dTfllLskvY~r-idQP~~AL~~~~~gld~fP~~VT~l~g~ARi~ea 302 (478)
T KOG1129|consen 226 KQQMGKCYLRLGM-PRRAEKQLQSSLTQFPH-PDTFLLLSKVYQR-IDQPERALLVIGEGLDSFPFDVTYLLGQARIHEA 302 (478)
T ss_pred HHHHHHHHHHhcC-hhhhHHHHHHHhhcCCc-hhHHHHHHHHHHH-hccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHH
Confidence 3578999999997 99999999999987764 8899999999999 9999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 045024 105 GGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYG 184 (1173)
Q Consensus 105 ~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 184 (1173)
++++++|.++|+.+++.+|.+.++.-.+|.-|+..++.+-|+.+|++.+++.-.+++.+.++|.+.+..++++-++..|+
T Consensus 303 m~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~ 382 (478)
T KOG1129|consen 303 MEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQ 382 (478)
T ss_pred HHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCC---ChHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHH
Q 045024 185 RAIELDDT---SIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLASGLLGLAKQCINLGAFRWGASLLEDA 261 (1173)
Q Consensus 185 ~al~~~p~---~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~l~~~~~a~g~~~~A~~~l~~A 261 (1173)
+++....+ -.++|+++|.+....|++.-|...|+-++..++++.+++.+++..-.+.|+ .+.|..++..|
T Consensus 383 RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~-------i~~Arsll~~A 455 (478)
T KOG1129|consen 383 RALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGD-------ILGARSLLNAA 455 (478)
T ss_pred HHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCc-------hHHHHHHHHHh
Confidence 99987542 478999999999999999999999999999999999999999888777666 66666666666
Q ss_pred HHHHHHHhhhc
Q 045024 262 CKVAEANTRLA 272 (1173)
Q Consensus 262 l~~~~~~~~~~ 272 (1173)
....+.+.+..
T Consensus 456 ~s~~P~m~E~~ 466 (478)
T KOG1129|consen 456 KSVMPDMAEVT 466 (478)
T ss_pred hhhCccccccc
Confidence 66555544433
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.8e-14 Score=145.78 Aligned_cols=186 Identities=20% Similarity=0.161 Sum_probs=170.9
Q ss_pred HHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q 045024 57 AVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQ 136 (1173)
Q Consensus 57 ~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~ 136 (1173)
..+...+|.-|+. .|++..|..-++++++.+|++..+|..++.+|...|+.+.|.+.|++++.++|++.+++++.|..+
T Consensus 35 a~arlqLal~YL~-~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FL 113 (250)
T COG3063 35 AKARLQLALGYLQ-QGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFL 113 (250)
T ss_pred HHHHHHHHHHHHH-CCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHH
Confidence 4678899999999 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHH
Q 045024 137 LHHKKWSEAVQSLQHAIRG--YPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGV 214 (1173)
Q Consensus 137 ~~~g~~~~A~~~l~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~ 214 (1173)
+.+|++++|...|++++.. .|..+.++.++|.|..+.|+++.|...|+++++.+|+++.+...++..++..|++..|.
T Consensus 114 C~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 114 CAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred HhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHH
Confidence 9999999999999999974 45678899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHHHH
Q 045024 215 EQFQLALKISSENVSAHYGLASGLLGLAK 243 (1173)
Q Consensus 215 ~~~~~al~~~p~~~~a~~~la~~~~~l~~ 243 (1173)
.++++.....+-..........+-...|+
T Consensus 194 ~~~~~~~~~~~~~A~sL~L~iriak~~gd 222 (250)
T COG3063 194 LYLERYQQRGGAQAESLLLGIRIAKRLGD 222 (250)
T ss_pred HHHHHHHhcccccHHHHHHHHHHHHHhcc
Confidence 99999988777666655544444444444
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.4e-15 Score=171.78 Aligned_cols=220 Identities=20% Similarity=0.235 Sum_probs=193.1
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 045024 5 GALLLQLEDSLEANPDDPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRA 84 (1173)
Q Consensus 5 ~aAi~~l~~al~~~P~~~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~a 84 (1173)
..|+-.|+.+++.+|++.++|..||.+..+.++ =..|+..++++++++|++.+++..||..|.. .|.-.+|..++.+-
T Consensus 302 ~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~-E~~ai~AL~rcl~LdP~NleaLmaLAVSytN-eg~q~~Al~~L~~W 379 (579)
T KOG1125|consen 302 SEAALAFEAAVKQDPQHAEAWQKLGITQAENEN-EQNAISALRRCLELDPTNLEALMALAVSYTN-EGLQNQALKMLDKW 379 (579)
T ss_pred hHHHHHHHHHHhhChHHHHHHHHhhhHhhhccc-hHHHHHHHHHHHhcCCccHHHHHHHHHHHhh-hhhHHHHHHHHHHH
Confidence 346889999999999999999999999998887 4899999999999999999999999999999 99999999999999
Q ss_pred HhhCCCCHHHHHH-------HHHHHHHCCCHHHHHHHHHHHHhhCC--CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 045024 85 VSLSPDDSVSGEA-------LCELLEHGGKESLEVVVCREASDKSP--RAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRG 155 (1173)
Q Consensus 85 l~~~p~~~~a~~~-------La~~~~~~g~~~~A~~~~~~al~~~p--~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~ 155 (1173)
+...|........ ...-......+..-.+.|-.+....| .++++...||.+|...|+|++|+.+|+.++..
T Consensus 380 i~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v 459 (579)
T KOG1125|consen 380 IRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQV 459 (579)
T ss_pred HHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhc
Confidence 9887764332110 00000111123455667777777788 68999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCC
Q 045024 156 YPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSE 226 (1173)
Q Consensus 156 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 226 (1173)
+|+|...|..||-.+..-.+.++|+..|++|+++.|..+.+++++|..++.+|.|++|+++|-.++.+.+.
T Consensus 460 ~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~k 530 (579)
T KOG1125|consen 460 KPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRK 530 (579)
T ss_pred CCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999988765
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.2e-13 Score=145.25 Aligned_cols=224 Identities=15% Similarity=0.128 Sum_probs=185.8
Q ss_pred ChHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHccCCHHH
Q 045024 2 DEKGALLLQLEDSLEANPDDPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQN-----AVAFRYLGHYYTRFSIDTQR 76 (1173)
Q Consensus 2 d~~~aAi~~l~~al~~~P~~~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~-----~~a~~~lg~~~~~~~g~~~e 76 (1173)
+..++|++.|..+++.+|+..++++.+|..+...|. .+.|+..-+..+ ..|+. ..+.+.+|.-|+. .|-++.
T Consensus 49 ~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGE-vDRAIRiHQ~L~-~spdlT~~qr~lAl~qL~~Dym~-aGl~DR 125 (389)
T COG2956 49 NQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGE-VDRAIRIHQTLL-ESPDLTFEQRLLALQQLGRDYMA-AGLLDR 125 (389)
T ss_pred cCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcch-HHHHHHHHHHHh-cCCCCchHHHHHHHHHHHHHHHH-hhhhhH
Confidence 345667999999999999999999999998888887 889988766555 34543 3577888999999 999999
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc-----HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 045024 77 AIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRA-----FWAFRRLGYLQLHHKKWSEAVQSLQH 151 (1173)
Q Consensus 77 A~~~~~~al~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~-----~~a~~~la~~~~~~g~~~~A~~~l~~ 151 (1173)
|...|....+...--..+...|..+|....+|++|++..++..+..+.. ...+..++..+....+.+.|+..+.+
T Consensus 126 AE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~k 205 (389)
T COG2956 126 AEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKK 205 (389)
T ss_pred HHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 9999988877655566778888899999999999999999888887764 44566778888888889999999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCH
Q 045024 152 AIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTS-IFPLLESGNIFLMLGNFRKGVEQFQLALKISSENV 228 (1173)
Q Consensus 152 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 228 (1173)
+++.+|+++.+-..+|.++...|+|+.|++.++.+++.+|+. +.+...+..+|..+|+.++....+.++.+..+...
T Consensus 206 Alqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~ 283 (389)
T COG2956 206 ALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGAD 283 (389)
T ss_pred HHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCcc
Confidence 999999999999999999999999999999999999988885 56777888899999999999999999888776643
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=99.65 E-value=4.3e-14 Score=158.72 Aligned_cols=218 Identities=13% Similarity=0.069 Sum_probs=192.8
Q ss_pred HHHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccC-CHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 045024 22 PSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSI-DTQRAIKCYQRAVSLSPDDSVSGEALCE 100 (1173)
Q Consensus 22 ~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g-~~~eA~~~~~~al~~~p~~~~a~~~La~ 100 (1173)
..++-.+-.++...+. +++|+..+.++++++|++..+|..+|.++.. .| ++++++..++++++.+|++..+|...+.
T Consensus 37 ~~a~~~~ra~l~~~e~-serAL~lt~~aI~lnP~~ytaW~~R~~iL~~-L~~~l~eeL~~~~~~i~~npknyqaW~~R~~ 114 (320)
T PLN02789 37 REAMDYFRAVYASDER-SPRALDLTADVIRLNPGNYTVWHFRRLCLEA-LDADLEEELDFAEDVAEDNPKNYQIWHHRRW 114 (320)
T ss_pred HHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHCchhHHHHHHHHHHHHH-cchhHHHHHHHHHHHHHHCCcchHHhHHHHH
Confidence 3444333334444444 8999999999999999999999999999999 88 6899999999999999999999999999
Q ss_pred HHHHCCCH--HHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc---CC
Q 045024 101 LLEHGGKE--SLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRL---GM 175 (1173)
Q Consensus 101 ~~~~~g~~--~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~---g~ 175 (1173)
++...|+. ++++..++++++.+|++..+|..++.++...|+++++++.++++++.+|.+..+|..++.+.... |.
T Consensus 115 ~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~ 194 (320)
T PLN02789 115 LAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGG 194 (320)
T ss_pred HHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhcccccc
Confidence 99988874 78899999999999999999999999999999999999999999999999999999999998776 33
Q ss_pred H----HHHHHHHHHHHHhCCCChHHHHHHHHHHHH----cCChHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHH
Q 045024 176 F----SAAIKSYGRAIELDDTSIFPLLESGNIFLM----LGNFRKGVEQFQLALKISSENVSAHYGLASGLLGL 241 (1173)
Q Consensus 176 ~----~~A~~~~~~al~~~p~~~~a~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~l 241 (1173)
+ ++++.+..+++..+|++..+|..++.++.. +++..+|+..+.+++...|.++.+...++.++...
T Consensus 195 ~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~ 268 (320)
T PLN02789 195 LEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEG 268 (320)
T ss_pred ccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhh
Confidence 3 578888899999999999999999999988 45677899999999999999998888888888753
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.8e-14 Score=160.24 Aligned_cols=203 Identities=14% Similarity=0.078 Sum_probs=186.3
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCH--HHHHHHH
Q 045024 4 KGALLLQLEDSLEANPDDPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDT--QRAIKCY 81 (1173)
Q Consensus 4 ~~aAi~~l~~al~~~P~~~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~--~eA~~~~ 81 (1173)
...|+..+.++++.+|++..+|..+|.++...+.++++++..++++++.+|++..+|..++.++.. .|+. ++++.++
T Consensus 53 serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~-l~~~~~~~el~~~ 131 (320)
T PLN02789 53 SPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEK-LGPDAANKELEFT 131 (320)
T ss_pred CHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHH-cCchhhHHHHHHH
Confidence 345799999999999999999999999999988558999999999999999999999999999999 8874 7889999
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHc---CCH----HHHHHHHHHHHH
Q 045024 82 QRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHH---KKW----SEAVQSLQHAIR 154 (1173)
Q Consensus 82 ~~al~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~---g~~----~~A~~~l~~al~ 154 (1173)
+++++.+|++..+|...+.++...|+++++++.+.++++.+|++..+|..++.+.... |.+ ++++.+..+++.
T Consensus 132 ~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~ 211 (320)
T PLN02789 132 RKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAIL 211 (320)
T ss_pred HHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999998776 333 578888899999
Q ss_pred hCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc
Q 045024 155 GYPTSPHLWEALGLAYHR----LGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLML 207 (1173)
Q Consensus 155 ~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~ 207 (1173)
.+|++..+|..++.++.. .++..+|++.+.+++...|.++.++..++.+|...
T Consensus 212 ~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~ 268 (320)
T PLN02789 212 ANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEG 268 (320)
T ss_pred hCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhh
Confidence 999999999999999988 45677899999999999999999999999999863
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.63 E-value=6.2e-15 Score=154.30 Aligned_cols=227 Identities=15% Similarity=0.115 Sum_probs=212.2
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 045024 6 ALLLQLEDSLEANPDDPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAV 85 (1173)
Q Consensus 6 aAi~~l~~al~~~P~~~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al 85 (1173)
.|.+.|+..++..| .++.+..+..+|....+ +..|+..|.+.++..|.+...+..+++++.. ++++++|.++|+.++
T Consensus 241 ~AekqlqssL~q~~-~~dTfllLskvY~ridQ-P~~AL~~~~~gld~fP~~VT~l~g~ARi~ea-m~~~~~a~~lYk~vl 317 (478)
T KOG1129|consen 241 RAEKQLQSSLTQFP-HPDTFLLLSKVYQRIDQ-PERALLVIGEGLDSFPFDVTYLLGQARIHEA-MEQQEDALQLYKLVL 317 (478)
T ss_pred hhHHHHHHHhhcCC-chhHHHHHHHHHHHhcc-HHHHHHHHhhhhhcCCchhhhhhhhHHHHHH-HHhHHHHHHHHHHHH
Confidence 45888999998776 57888999999998887 9999999999999999999999999999999 999999999999999
Q ss_pred hhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---CCHHH
Q 045024 86 SLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYP---TSPHL 162 (1173)
Q Consensus 86 ~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p---~~~~~ 162 (1173)
+.+|.+.++.-.+|.-|+..++++-|+.+|+++++..-.+++.+.++|.+.+..++++-++..|++++.... .-.++
T Consensus 318 k~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDv 397 (478)
T KOG1129|consen 318 KLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADV 397 (478)
T ss_pred hcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhh
Confidence 999999999999999999999999999999999999999999999999999999999999999999998643 34789
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCHHHHHHHH
Q 045024 163 WEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLA 235 (1173)
Q Consensus 163 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la 235 (1173)
|+++|.+....||+.-|..+|+-++..++++.+++.++|.+-.+.|+.++|..++..+-...|+-.+..++++
T Consensus 398 WYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m~E~~~Nl~ 470 (478)
T KOG1129|consen 398 WYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPDMAEVTTNLQ 470 (478)
T ss_pred hhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCcccccccccee
Confidence 9999999999999999999999999999999999999999999999999999999999999998776665554
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.4e-11 Score=136.39 Aligned_cols=101 Identities=18% Similarity=0.098 Sum_probs=75.2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcC-CCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCH
Q 045024 521 YPESHNLYGLVCEARSDYQAAVVSYRLARYAISSS-SGTVPNSHFQDISINLARSLSRAGNALDAVRECESLERQGMLDA 599 (1173)
Q Consensus 521 ~~~a~~~lg~i~~~~g~~~~A~~~~~kAl~l~~~~-pe~~~~~~~~~~~~~La~~~~~~g~~~eAi~~~~~~~~~~p~~~ 599 (1173)
.|.+-..+-.++.+.++.+.|...+.+|+.-.... +. .......+...+..-.+.|+-++|...++++++.+|.+.
T Consensus 416 ~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~---s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d~ 492 (652)
T KOG2376|consen 416 LPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTG---SIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPNDT 492 (652)
T ss_pred ChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhccc---chHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCchH
Confidence 44444556667788888888888888887655443 22 234455677788888899999999999999999999999
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHH
Q 045024 600 EVLQVYAFSLWQLGKYDLALSMARNL 625 (1173)
Q Consensus 600 ~~~~~la~a~~~~g~~~eA~~~~~~a 625 (1173)
+++..+..+|... +.+.|..+-+.+
T Consensus 493 ~~l~~lV~a~~~~-d~eka~~l~k~L 517 (652)
T KOG2376|consen 493 DLLVQLVTAYARL-DPEKAESLSKKL 517 (652)
T ss_pred HHHHHHHHHHHhc-CHHHHHHHhhcC
Confidence 9998888887765 456665555443
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.61 E-value=8.5e-13 Score=139.08 Aligned_cols=215 Identities=18% Similarity=0.205 Sum_probs=187.7
Q ss_pred HHHHHHHHHccCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCH-----HHHHHHHH
Q 045024 26 LDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDS-----VSGEALCE 100 (1173)
Q Consensus 26 ~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~-----~a~~~La~ 100 (1173)
|..|.-++-.++ .++|+..|..+++.+|...++...+|..|.. .|..+.|+...+..++ .|+.. .+...||.
T Consensus 39 Yv~GlNfLLs~Q-~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRs-RGEvDRAIRiHQ~L~~-spdlT~~qr~lAl~qL~~ 115 (389)
T COG2956 39 YVKGLNFLLSNQ-PDKAVDLFLEMLQEDPETFEAHLTLGNLFRS-RGEVDRAIRIHQTLLE-SPDLTFEQRLLALQQLGR 115 (389)
T ss_pred HHhHHHHHhhcC-cchHHHHHHHHHhcCchhhHHHHHHHHHHHh-cchHHHHHHHHHHHhc-CCCCchHHHHHHHHHHHH
Confidence 455666655555 7999999999999999999999999999999 9999999999887765 45543 35889999
Q ss_pred HHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHcCC
Q 045024 101 LLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTS-----PHLWEALGLAYHRLGM 175 (1173)
Q Consensus 101 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~-----~~~~~~la~~~~~~g~ 175 (1173)
-|+..|-++.|...|....+...--..+...+..+|....+|++|+..-++..++.+.. +..+..++..+....+
T Consensus 116 Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~ 195 (389)
T COG2956 116 DYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSD 195 (389)
T ss_pred HHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhh
Confidence 99999999999999999887655567899999999999999999999999999988855 4567788999999999
Q ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCH-HHHHHHHHHHHHHHH
Q 045024 176 FSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENV-SAHYGLASGLLGLAK 243 (1173)
Q Consensus 176 ~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-~a~~~la~~~~~l~~ 243 (1173)
.+.|+..+.++++.+|+.+.+-..+|.++...|+|++|++.++.+++.+|+.. .+...+..+|..+|+
T Consensus 196 ~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~ 264 (389)
T COG2956 196 VDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGK 264 (389)
T ss_pred HHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999863 345556666666665
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.59 E-value=9.1e-12 Score=131.97 Aligned_cols=446 Identities=13% Similarity=0.038 Sum_probs=277.4
Q ss_pred cHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Q 045024 38 SKEKAAEHFVIAAKLNPQNA-VAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCR 116 (1173)
Q Consensus 38 ~~~~A~~~~~~al~~~p~~~-~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~ 116 (1173)
+|+.|+..++-....+.+.. ..-..+|.+++. .|+|++|...|.-+.+.+..+.+.+..++.+++..|.|.+|.....
T Consensus 37 DytGAislLefk~~~~~EEE~~~~lWia~C~fh-LgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ 115 (557)
T KOG3785|consen 37 DYTGAISLLEFKLNLDREEEDSLQLWIAHCYFH-LGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAE 115 (557)
T ss_pred cchhHHHHHHHhhccchhhhHHHHHHHHHHHHh-hccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHh
Confidence 49999999888775554433 566779999999 9999999999999998777778889999999999999999988776
Q ss_pred HHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHH
Q 045024 117 EASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFP 196 (1173)
Q Consensus 117 ~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a 196 (1173)
++ |+++-....+-.+..+.|+-++-...-+. +. +..+-...++.+.+..-.|.+|++.|.+++.-+|+....
T Consensus 116 ka----~k~pL~~RLlfhlahklndEk~~~~fh~~-Lq---D~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~al 187 (557)
T KOG3785|consen 116 KA----PKTPLCIRLLFHLAHKLNDEKRILTFHSS-LQ---DTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIAL 187 (557)
T ss_pred hC----CCChHHHHHHHHHHHHhCcHHHHHHHHHH-Hh---hhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhh
Confidence 54 66666555566666677776555444333 32 223556778888888889999999999999999998888
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHhhhcCChH
Q 045024 197 LLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLASGLLGLAKQCINLGAFRWGASLLEDACKVAEANTRLAGNMS 276 (1173)
Q Consensus 197 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~l~~~~~a~g~~~~A~~~l~~Al~~~~~~~~~~~~~~ 276 (1173)
...++.+|.++.-|+-+.+.+.-.+...|+++.+....+..+.++-. |+..+ ++-.++........+
T Consensus 188 NVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~n-----gr~ae-----~E~k~ladN~~~~~~--- 254 (557)
T KOG3785|consen 188 NVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLIN-----GRTAE-----DEKKELADNIDQEYP--- 254 (557)
T ss_pred HHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhc-----cchhH-----HHHHHHHhcccccch---
Confidence 89999999999999999999999999999999887766666555322 11100 000000000000000
Q ss_pred HHHHHhchHHHHHhhccchhhhhhchhhhhhhhhhhhHhhHhhhhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHh
Q 045024 277 CIWKLHGDIQLTYAKCFPWAEERQSLEFDVETFSASIVSWKTTCLMAAISSKSSYQRALYLAPWQANIYTDIAITSDLIY 356 (1173)
Q Consensus 277 ~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g 356 (1173)
|...+......-+..-+.|++.+-..++. -|++..+++..|..++
T Consensus 255 --------------------------------f~~~l~rHNLVvFrngEgALqVLP~L~~~---IPEARlNL~iYyL~q~ 299 (557)
T KOG3785|consen 255 --------------------------------FIEYLCRHNLVVFRNGEGALQVLPSLMKH---IPEARLNLIIYYLNQN 299 (557)
T ss_pred --------------------------------hHHHHHHcCeEEEeCCccHHHhchHHHhh---ChHhhhhheeeecccc
Confidence 00000000000000112344333333333 2345555555555555
Q ss_pred hHHHhhhhhhhhhHHHHHHHHHHHhhcCCCHHHHHHHHHhhcccHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHH
Q 045024 357 SLNEAYGHYQSAWHVSEKMALGALLLEGDNCQFWVTLGCLSNYNGLKQHALIRGLQLDVSLADAWAHIGKLYGEVGEKKL 436 (1173)
Q Consensus 357 ~~~eA~~~~~~~~~~A~k~~~~al~~~p~~~~~~~~Lg~~~~~~~~a~~a~~kal~l~p~~~~a~~~Lg~~y~~~g~~e~ 436 (1173)
+..+|.. -.-+++|..|.-+...|.+....|+--.
T Consensus 300 dVqeA~~---------------------------------------------L~Kdl~PttP~EyilKgvv~aalGQe~g 334 (557)
T KOG3785|consen 300 DVQEAIS---------------------------------------------LCKDLDPTTPYEYILKGVVFAALGQETG 334 (557)
T ss_pred cHHHHHH---------------------------------------------HHhhcCCCChHHHHHHHHHHHHhhhhcC
Confidence 5555522 2223455555555555666555555433
Q ss_pred HHHHHHHHHhh---------CCCChhHHHHhHHHHHHhcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCCChHHH
Q 045024 437 ARQAFDSARSI---------DPSLALPWAGMSADVQASESLVDDAFESCLRAVQILPLAEFQIGLAKLAKLSGHLSSSQV 507 (1173)
Q Consensus 437 A~~~f~~al~~---------~P~~~~a~~~l~a~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~la~l~~~~g~~~~~~A 507 (1173)
..+..+-|.+. .-+.......+ +..+.-..+++ +.
T Consensus 335 SreHlKiAqqffqlVG~Sa~ecDTIpGRQsm-As~fFL~~qFd-----------------------------------dV 378 (557)
T KOG3785|consen 335 SREHLKIAQQFFQLVGESALECDTIPGRQSM-ASYFFLSFQFD-----------------------------------DV 378 (557)
T ss_pred cHHHHHHHHHHHHHhcccccccccccchHHH-HHHHHHHHHHH-----------------------------------HH
Confidence 33333322211 00111111111 11121222222 33
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHH
Q 045024 508 FGAIQQAIQRGPHYPESHNLYGLVCEARSDYQAAVVSYRLARYAISSSSGTVPNSHFQDISINLARSLSRAGNALDAVRE 587 (1173)
Q Consensus 508 ~~~l~~al~~~P~~~~a~~~lg~i~~~~g~~~~A~~~~~kAl~l~~~~pe~~~~~~~~~~~~~La~~~~~~g~~~eAi~~ 587 (1173)
+..++..-....++....++++..+...|++.+|.+.|-++- .|+ ......-...||++|...|+++-|-..
T Consensus 379 l~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~eaEelf~~is-----~~~---ikn~~~Y~s~LArCyi~nkkP~lAW~~ 450 (557)
T KOG3785|consen 379 LTYLNSIESYFTNDDDFNLNLAQAKLATGNYVEAEELFIRIS-----GPE---IKNKILYKSMLARCYIRNKKPQLAWDM 450 (557)
T ss_pred HHHHHHHHHHhcCcchhhhHHHHHHHHhcChHHHHHHHhhhc-----Chh---hhhhHHHHHHHHHHHHhcCCchHHHHH
Confidence 333333333345666777899999999999999999998661 111 111112344689999999999999877
Q ss_pred HHHHHHcCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHhhhccc
Q 045024 588 CESLERQGMLD-AEVLQVYAFSLWQLGKYDLALSMARNLASSVSA 631 (1173)
Q Consensus 588 ~~~~~~~~p~~-~~~~~~la~a~~~~g~~~eA~~~~~~aL~~~p~ 631 (1173)
+-+. ..|.+ ...+..++..+++.+++==|.+.|..+-..+|.
T Consensus 451 ~lk~--~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~ 493 (557)
T KOG3785|consen 451 MLKT--NTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPT 493 (557)
T ss_pred HHhc--CCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCC
Confidence 7554 23333 345567888999999998888888877666663
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.5e-09 Score=122.04 Aligned_cols=545 Identities=12% Similarity=0.077 Sum_probs=338.9
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHC--------CCHHHHHHHHHH
Q 045024 46 FVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHG--------GKESLEVVVCRE 117 (1173)
Q Consensus 46 ~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~~--------g~~~~A~~~~~~ 117 (1173)
|+.-+..+|.+...|......... .-..+-.-.|+++++.-|.+...|+..-..-..+ ..|..--.+|++
T Consensus 16 fEeEilRnp~svk~W~RYIe~k~~--sp~k~~~~lYERal~~lp~sykiW~~YL~~R~~~vk~~~~T~~~~~~vn~c~er 93 (835)
T KOG2047|consen 16 FEEEILRNPFSVKCWLRYIEHKAG--SPDKQRNLLYERALKELPGSYKIWYDYLKARRAQVKHLCPTDPAYESVNNCFER 93 (835)
T ss_pred hHHHHHcCchhHHHHHHHHHHHcc--CChHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHH
Confidence 555666788888888776554333 2234455689999999999998877765333221 235666677888
Q ss_pred HHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH
Q 045024 118 ASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYP--TSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIF 195 (1173)
Q Consensus 118 al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 195 (1173)
++..-.+-+..|.........+|+...-...|.+++..-| .+...|-.........|-.+-++..|++.++.+|...
T Consensus 94 ~lv~mHkmpRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~- 172 (835)
T KOG2047|consen 94 CLVFMHKMPRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEAR- 172 (835)
T ss_pred HHHHHhcCCHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHH-
Confidence 8776667778899999999999999999999999999888 3445666666667778888999999999999998763
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhhc-------CCCHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHH
Q 045024 196 PLLESGNIFLMLGNFRKGVEQFQLALKIS-------SENVSAHYGLASGLLGLAKQCINLGAFRWGASLLEDACKVAEAN 268 (1173)
Q Consensus 196 a~~~la~~~~~~g~~~~A~~~~~~al~~~-------p~~~~a~~~la~~~~~l~~~~~a~g~~~~A~~~l~~Al~~~~~~ 268 (1173)
......+...++.++|.+.|...+..+ +.+...|..+.....+.-+.-... ++ + .+++..
T Consensus 173 --eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~sl-nv-------d---aiiR~g 239 (835)
T KOG2047|consen 173 --EEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSL-NV-------D---AIIRGG 239 (835)
T ss_pred --HHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhccc-CH-------H---HHHHhh
Confidence 455667888999999999999887543 334445544444443332210000 00 0 111111
Q ss_pred hh-hcCChHHHHHHhchHHHHHhhccchhhhhhchhhhhhhhhhhhHhhHhhhhHHHHHHHHHHHHHHhcCCC---CHHH
Q 045024 269 TR-LAGNMSCIWKLHGDIQLTYAKCFPWAEERQSLEFDVETFSASIVSWKTTCLMAAISSKSSYQRALYLAPW---QANI 344 (1173)
Q Consensus 269 ~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~---~~~~ 344 (1173)
.. .....+.+|..+++.+...+ .++.|...|++++..--. ...+
T Consensus 240 i~rftDq~g~Lw~SLAdYYIr~g--------------------------------~~ekarDvyeeai~~v~tvrDFt~i 287 (835)
T KOG2047|consen 240 IRRFTDQLGFLWCSLADYYIRSG--------------------------------LFEKARDVYEEAIQTVMTVRDFTQI 287 (835)
T ss_pred cccCcHHHHHHHHHHHHHHHHhh--------------------------------hhHHHHHHHHHHHHhheehhhHHHH
Confidence 11 12234455666666554443 356677777777654322 1111
Q ss_pred HHHH-----HHHHHHHhh-HHH-hhhhhhhhhHHHHHHH------------HHHHhhcCCCHHHHHHHHHhhc-ccHHHH
Q 045024 345 YTDI-----AITSDLIYS-LNE-AYGHYQSAWHVSEKMA------------LGALLLEGDNCQFWVTLGCLSN-YNGLKQ 404 (1173)
Q Consensus 345 ~~~l-----a~~~~~~g~-~~e-A~~~~~~~~~~A~k~~------------~~al~~~p~~~~~~~~Lg~~~~-~~~~a~ 404 (1173)
+... ..+-.+++- -++ +.......++.....+ .-.+..+|.+..-|...-.++. +..+..
T Consensus 288 fd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l~e~~~~~~i 367 (835)
T KOG2047|consen 288 FDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKLYEGNAAEQI 367 (835)
T ss_pred HHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhhhcCChHHHH
Confidence 1111 111111220 000 0000001111111111 1456678888888887776666 466667
Q ss_pred HHHHHHH-hcCCCc-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC----hhHHHHhHHHHHHhcCCHHHHHH
Q 045024 405 HALIRGL-QLDVSL-----ADAWAHIGKLYGEVGEKKLARQAFDSARSIDPSL----ALPWAGMSADVQASESLVDDAFE 474 (1173)
Q Consensus 405 ~a~~kal-~l~p~~-----~~a~~~Lg~~y~~~g~~e~A~~~f~~al~~~P~~----~~a~~~l~a~~~~~~g~~~eA~~ 474 (1173)
..|..|+ ..+|.. ...|..+|.+|...|+.+.|...|+++.+.+-.. ...|.. -+..-.+..+++.|+.
T Consensus 368 ~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~-waemElrh~~~~~Al~ 446 (835)
T KOG2047|consen 368 NTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCA-WAEMELRHENFEAALK 446 (835)
T ss_pred HHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHH-HHHHHHhhhhHHHHHH
Confidence 7788877 345542 3678999999999999999999999998874322 457777 4567778888999999
Q ss_pred HHHHHHhcCCchHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhc
Q 045024 475 SCLRAVQILPLAEFQIGLAKLAKLSGHLSSSQVFGAIQQAIQRGPHYPESHNLYGLVCEARSDYQAAVVSYRLARYAISS 554 (1173)
Q Consensus 475 ~~~~al~~~p~~~~~~~la~l~~~~g~~~~~~A~~~l~~al~~~P~~~~a~~~lg~i~~~~g~~~~A~~~~~kAl~l~~~ 554 (1173)
+.+++......+. + ....+.. +.++. --.+...|...+++.+..|-++.-...|++++++--.
T Consensus 447 lm~~A~~vP~~~~----~---~~yd~~~-pvQ~r---------lhrSlkiWs~y~DleEs~gtfestk~vYdriidLria 509 (835)
T KOG2047|consen 447 LMRRATHVPTNPE----L---EYYDNSE-PVQAR---------LHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA 509 (835)
T ss_pred HHHhhhcCCCchh----h---hhhcCCC-cHHHH---------HHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC
Confidence 8888876633222 0 0001110 11111 0134567778888888888888888888888766222
Q ss_pred CCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--CHHHHHH---HHHHHHHcCChHHHHHHHHHHhhhc
Q 045024 555 SSGTVPNSHFQDISINLARSLSRAGNALDAVRECESLERQGML--DAEVLQV---YAFSLWQLGKYDLALSMARNLASSV 629 (1173)
Q Consensus 555 ~pe~~~~~~~~~~~~~La~~~~~~g~~~eAi~~~~~~~~~~p~--~~~~~~~---la~a~~~~g~~~eA~~~~~~aL~~~ 629 (1173)
. .++-.|.|..+..+.-++++-+.|++-+...+- -.+.|.. ....-+..-..+.|...|+++|+..
T Consensus 510 T---------Pqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~C 580 (835)
T KOG2047|consen 510 T---------PQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGC 580 (835)
T ss_pred C---------HHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcC
Confidence 2 236677788888888888888888887665433 2344422 2233333446688888888888877
Q ss_pred cccccchhhhhHHHHHHHHHHhcChhhhhHHhhhCCCCc
Q 045024 630 SAMEQSSAAASVSFICRLLYHISGLDSTINSILKMPKGL 668 (1173)
Q Consensus 630 p~~~~~~~~~~~~~la~l~~~~g~~~~A~~~l~~~p~~~ 668 (1173)
| ......++.+.|.+-...|....|..++++....+
T Consensus 581 p---p~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v 616 (835)
T KOG2047|consen 581 P---PEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAV 616 (835)
T ss_pred C---HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcC
Confidence 6 22333456666677666777677776666644443
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.6e-13 Score=148.67 Aligned_cols=251 Identities=18% Similarity=0.124 Sum_probs=216.1
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 045024 5 GALLLQLEDSLEANPDDPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRA 84 (1173)
Q Consensus 5 ~aAi~~l~~al~~~P~~~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~a 84 (1173)
+.|+..+..+++..|+++..|...+..+...++ |++|....++.++++|.....+...++++.. .++..+|...++..
T Consensus 66 ~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~-~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a-~~~~i~A~~~~~~~ 143 (486)
T KOG0550|consen 66 GNALKNYTFAIDMCPDNASYYSNRAATLMMLGR-FEEALGDARQSVRLKDGFSKGQLREGQCHLA-LSDLIEAEEKLKSK 143 (486)
T ss_pred HHHHHHHHHHHHhCccchhhhchhHHHHHHHHh-HhhcccchhhheecCCCccccccchhhhhhh-hHHHHHHHHHhhhh
Confidence 446999999999999999999999999999998 9999999999999999999999999999999 99888888666522
Q ss_pred H------------hhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHH
Q 045024 85 V------------SLS------PDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAV 146 (1173)
Q Consensus 85 l------------~~~------p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~ 146 (1173)
- .+- |....+...-+.++...|++++|...--.++++++.+..+++..|.+++..++.+.|+
T Consensus 144 ~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~ 223 (486)
T KOG0550|consen 144 QAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAI 223 (486)
T ss_pred hhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHH
Confidence 1 011 2223456677889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCH------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----hHHHHHHHHHHHHcCCh
Q 045024 147 QSLQHAIRGYPTSP------------HLWEALGLAYHRLGMFSAAIKSYGRAIELDDTS----IFPLLESGNIFLMLGNF 210 (1173)
Q Consensus 147 ~~l~~al~~~p~~~------------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~a~~~la~~~~~~g~~ 210 (1173)
..|+++++++|+.. ..+-.-|+-.++.|++..|.+.|..+|.++|++ ...+.+++.+..++|+.
T Consensus 224 ~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl 303 (486)
T KOG0550|consen 224 NHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRL 303 (486)
T ss_pred HHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCc
Confidence 99999999999763 346677899999999999999999999999985 45678899999999999
Q ss_pred HHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHH
Q 045024 211 RKGVEQFQLALKISSENVSAHYGLASGLLGLAKQCINLGAFRWGASLLEDACKV 264 (1173)
Q Consensus 211 ~~A~~~~~~al~~~p~~~~a~~~la~~~~~l~~~~~a~g~~~~A~~~l~~Al~~ 264 (1173)
.+|+...+.+++++|....++...|.+++.+++ ++.|.+.++++++.
T Consensus 304 ~eaisdc~~Al~iD~syikall~ra~c~l~le~-------~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 304 REAISDCNEALKIDSSYIKALLRRANCHLALEK-------WEEAVEDYEKAMQL 350 (486)
T ss_pred hhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhh
Confidence 999999999999999988888888888877777 55555555555543
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.58 E-value=4.6e-13 Score=145.28 Aligned_cols=270 Identities=16% Similarity=0.073 Sum_probs=211.3
Q ss_pred HHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 045024 23 SLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELL 102 (1173)
Q Consensus 23 ~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~ 102 (1173)
.-....|..++.... |.+|+..+..|++..|+++..|...+..++. .|++++|....++.++++|..+......+.++
T Consensus 50 e~~k~~gn~~yk~k~-Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~-~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~ 127 (486)
T KOG0550|consen 50 EEAKEEGNAFYKQKT-YGNALKNYTFAIDMCPDNASYYSNRAATLMM-LGRFEEALGDARQSVRLKDGFSKGQLREGQCH 127 (486)
T ss_pred HHHHhhcchHHHHhh-HHHHHHHHHHHHHhCccchhhhchhHHHHHH-HHhHhhcccchhhheecCCCccccccchhhhh
Confidence 445667788888887 9999999999999999999999999999999 99999999999999999999999888888888
Q ss_pred HHCCCHHHHHHHHHHHH------------hhC------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 045024 103 EHGGKESLEVVVCREAS------------DKS------PRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWE 164 (1173)
Q Consensus 103 ~~~g~~~~A~~~~~~al------------~~~------p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~ 164 (1173)
...++..+|.+.++..- .+. |.-..+-..-+.++...|++++|...--..+++++.+.++++
T Consensus 128 ~a~~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~ 207 (486)
T KOG0550|consen 128 LALSDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALY 207 (486)
T ss_pred hhhHHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHH
Confidence 88888777776554221 111 222345566788999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCh------------HHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCHH---
Q 045024 165 ALGLAYHRLGMFSAAIKSYGRAIELDDTSI------------FPLLESGNIFLMLGNFRKGVEQFQLALKISSENVS--- 229 (1173)
Q Consensus 165 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~------------~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~--- 229 (1173)
..|.+++..++.+.|+..|++++.++|+.. ..+..-|+-.++.|++.+|.+.|..++.++|++..
T Consensus 208 vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~na 287 (486)
T KOG0550|consen 208 VRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNA 287 (486)
T ss_pred hcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhH
Confidence 999999999999999999999999999853 34556788899999999999999999999999754
Q ss_pred -HHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHhhhcCChHHHHHHhchHHHHHhhccchhhhhhchhhhhhh
Q 045024 230 -AHYGLASGLLGLAKQCINLGAFRWGASLLEDACKVAEANTRLAGNMSCIWKLHGDIQLTYAKCFPWAEERQSLEFDVET 308 (1173)
Q Consensus 230 -a~~~la~~~~~l~~~~~a~g~~~~A~~~l~~Al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~ 308 (1173)
.+.+++.+...+|+ ..+|+ .-......+++.....+...+..+..+.+
T Consensus 288 klY~nra~v~~rLgr-------l~eai-------sdc~~Al~iD~syikall~ra~c~l~le~----------------- 336 (486)
T KOG0550|consen 288 KLYGNRALVNIRLGR-------LREAI-------SDCNEALKIDSSYIKALLRRANCHLALEK----------------- 336 (486)
T ss_pred HHHHHhHhhhcccCC-------chhhh-------hhhhhhhhcCHHHHHHHHHHHHHHHHHHH-----------------
Confidence 34444445555444 43333 33333333444444445555555544333
Q ss_pred hhhhhHhhHhhhhHHHHHHHHHHHHHHhcCCC
Q 045024 309 FSASIVSWKTTCLMAAISSKSSYQRALYLAPW 340 (1173)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~ 340 (1173)
+++|++.|+++++...+
T Consensus 337 ---------------~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 337 ---------------WEEAVEDYEKAMQLEKD 353 (486)
T ss_pred ---------------HHHHHHHHHHHHhhccc
Confidence 56788888888877655
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.2e-10 Score=130.02 Aligned_cols=455 Identities=13% Similarity=0.013 Sum_probs=256.3
Q ss_pred hHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHH
Q 045024 3 EKGALLLQLEDSLEANPDDPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQ 82 (1173)
Q Consensus 3 ~~~aAi~~l~~al~~~P~~~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~ 82 (1173)
.+.+|+....+++...|++..+....-.++.+.+. |++|+...+.-...... ....+..+.|.++ .+..++|+..++
T Consensus 27 e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~k-y~~ALk~ikk~~~~~~~-~~~~fEKAYc~Yr-lnk~Dealk~~~ 103 (652)
T KOG2376|consen 27 EYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDK-YEDALKLIKKNGALLVI-NSFFFEKAYCEYR-LNKLDEALKTLK 103 (652)
T ss_pred HHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhH-HHHHHHHHHhcchhhhc-chhhHHHHHHHHH-cccHHHHHHHHh
Confidence 34445778888888888888888777777777776 88887444432211111 1222677888888 888888888877
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHH
Q 045024 83 RAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPT-SPH 161 (1173)
Q Consensus 83 ~al~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~-~~~ 161 (1173)
..++.+.......|.+++++|+|++|..+|+...+.+.++.+.-........... ..+ . ..+.+...|. +.+
T Consensus 104 ---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~--l~~-~-~~q~v~~v~e~sye 176 (652)
T KOG2376|consen 104 ---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAA--LQV-Q-LLQSVPEVPEDSYE 176 (652)
T ss_pred ---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHh--hhH-H-HHHhccCCCcchHH
Confidence 4456666677778888888888888888888887776665544333222211100 001 1 2233333443 567
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CC-------ChHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCC
Q 045024 162 LWEALGLAYHRLGMFSAAIKSYGRAIELD--------DT-------SIFPLLESGNIFLMLGNFRKGVEQFQLALKISSE 226 (1173)
Q Consensus 162 ~~~~la~~~~~~g~~~~A~~~~~~al~~~--------p~-------~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 226 (1173)
.+++.+.++...|+|.+|++.+++++.+. .+ -......++.++..+|+.++|...|...++.+|.
T Consensus 177 l~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~ 256 (652)
T KOG2376|consen 177 LLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPA 256 (652)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCC
Confidence 88999999999999999999999995431 11 1235678899999999999999999999999887
Q ss_pred CHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHhhhcCChHHHHHHhchHHHHHhhccchhhhhhchhhhh
Q 045024 227 NVSAHYGLASGLLGLAKQCINLGAFRWGASLLEDACKVAEANTRLAGNMSCIWKLHGDIQLTYAKCFPWAEERQSLEFDV 306 (1173)
Q Consensus 227 ~~~a~~~la~~~~~l~~~~~a~g~~~~A~~~l~~Al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~ 306 (1173)
+....-....-+..+... ..-++. .++.......... ...+.. ....
T Consensus 257 D~~~~Av~~NNLva~~~d---~~~~d~------~~l~~k~~~~~~l---~~~~l~----~Ls~----------------- 303 (652)
T KOG2376|consen 257 DEPSLAVAVNNLVALSKD---QNYFDG------DLLKSKKSQVFKL---AEFLLS----KLSK----------------- 303 (652)
T ss_pred CchHHHHHhcchhhhccc---cccCch------HHHHHHHHHHHHh---HHHHHH----HHHH-----------------
Confidence 764432222211111110 000000 0000000000000 000000 0000
Q ss_pred hhhhhhhHhhHhhhhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHhhhhhhhhhHHHHHHHHHHHhhcCCC
Q 045024 307 ETFSASIVSWKTTCLMAAISSKSSYQRALYLAPWQANIYTDIAITSDLIYSLNEAYGHYQSAWHVSEKMALGALLLEGDN 386 (1173)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~A~k~~~~al~~~p~~ 386 (1173)
.-...+......-..-........+....+.+..|...+..-.. ++
T Consensus 304 -~qk~~i~~N~~lL~l~tnk~~q~r~~~a~lp~~~p~~~~~~ll~--------~~------------------------- 349 (652)
T KOG2376|consen 304 -KQKQAIYRNNALLALFTNKMDQVRELSASLPGMSPESLFPILLQ--------EA------------------------- 349 (652)
T ss_pred -HHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCccCchHHHHHHHH--------HH-------------------------
Confidence 00000000000000001112222222223323222221111000 00
Q ss_pred HHHHHHHHHhhc-ccHHHHHHHHHHHhcCCCc-HHHHHHHHHHHHHcCCHHHHHHHHH--------HHHhhCCCChhHHH
Q 045024 387 CQFWVTLGCLSN-YNGLKQHALIRGLQLDVSL-ADAWAHIGKLYGEVGEKKLARQAFD--------SARSIDPSLALPWA 456 (1173)
Q Consensus 387 ~~~~~~Lg~~~~-~~~~a~~a~~kal~l~p~~-~~a~~~Lg~~y~~~g~~e~A~~~f~--------~al~~~P~~~~a~~ 456 (1173)
-.+.. ....+.+.+....+..|.+ ..+...++.+....|+++.|++.+. ...+. .+.....
T Consensus 350 -------t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~--~~~P~~V 420 (652)
T KOG2376|consen 350 -------TKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEA--KHLPGTV 420 (652)
T ss_pred -------HHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhh--ccChhHH
Confidence 00000 1123334455555556665 6788889999999999999999999 33332 2223333
Q ss_pred HhHHHHHHhcCCHHHHHHHHHHHHhc-------CC-chHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHH
Q 045024 457 GMSADVQASESLVDDAFESCLRAVQI-------LP-LAEFQIGLAKLAKLSGHLSSSQVFGAIQQAIQRGPHYPESHNLY 528 (1173)
Q Consensus 457 ~l~a~~~~~~g~~~eA~~~~~~al~~-------~p-~~~~~~~la~l~~~~g~~~~~~A~~~l~~al~~~P~~~~a~~~l 528 (1173)
+.+...+.+.++.+.|.+.+..++.- .+ ........+.+..+.|+ ..+|...++++++.+|++..++..+
T Consensus 421 ~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~--~~ea~s~leel~k~n~~d~~~l~~l 498 (652)
T KOG2376|consen 421 GAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGN--EEEASSLLEELVKFNPNDTDLLVQL 498 (652)
T ss_pred HHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCc--hHHHHHHHHHHHHhCCchHHHHHHH
Confidence 43444666778777777777777763 11 11233344666666666 5689999999999999999999888
Q ss_pred HHHHHHcCCHHHHHHHHH
Q 045024 529 GLVCEARSDYQAAVVSYR 546 (1173)
Q Consensus 529 g~i~~~~g~~~~A~~~~~ 546 (1173)
...|.+. +.+.|+.+=+
T Consensus 499 V~a~~~~-d~eka~~l~k 515 (652)
T KOG2376|consen 499 VTAYARL-DPEKAESLSK 515 (652)
T ss_pred HHHHHhc-CHHHHHHHhh
Confidence 8777763 4566655433
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.54 E-value=7.1e-12 Score=146.24 Aligned_cols=206 Identities=15% Similarity=0.078 Sum_probs=175.5
Q ss_pred hCCCCHHHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHH
Q 045024 17 ANPDDPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQN---AVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSV 93 (1173)
Q Consensus 17 ~~P~~~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~---~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~ 93 (1173)
.+|+.+.++..+|..+...++ ++++...+.++.+..|.+ .+..+..|..+.. .|++++|...++++++.+|++..
T Consensus 1 ~dp~~~~a~~~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~-~g~~~~A~~~~~~~l~~~P~~~~ 78 (355)
T cd05804 1 ADPDFALGHAAAALLLLLGGE-RPAAAAKAAAAAQALAARATERERAHVEALSAWI-AGDLPKALALLEQLLDDYPRDLL 78 (355)
T ss_pred CCCccHHHHHHHHHHHHhcCC-cchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHCCCcHH
Confidence 389999999999999988876 899899999988777754 5677888999999 99999999999999999999997
Q ss_pred HHHHHHHHHHHC----CCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 045024 94 SGEALCELLEHG----GKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLA 169 (1173)
Q Consensus 94 a~~~La~~~~~~----g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~ 169 (1173)
++.. +..+... +....+...+.......|........+|.++...|++++|+..++++++.+|+++.++..+|.+
T Consensus 79 a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i 157 (355)
T cd05804 79 ALKL-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHV 157 (355)
T ss_pred HHHH-hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHH
Confidence 7664 4444444 4445555555444456677788888999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCh----HHHHHHHHHHHHcCChHHHHHHHHHHHhhcC
Q 045024 170 YHRLGMFSAAIKSYGRAIELDDTSI----FPLLESGNIFLMLGNFRKGVEQFQLALKISS 225 (1173)
Q Consensus 170 ~~~~g~~~~A~~~~~~al~~~p~~~----~a~~~la~~~~~~g~~~~A~~~~~~al~~~p 225 (1173)
+...|++++|+..+++++...|.++ ..+..+|.++...|++++|+..|++++...|
T Consensus 158 ~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~ 217 (355)
T cd05804 158 LEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSA 217 (355)
T ss_pred HHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcccc
Confidence 9999999999999999999877432 3466899999999999999999999987666
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.53 E-value=8.1e-13 Score=154.38 Aligned_cols=244 Identities=19% Similarity=0.221 Sum_probs=194.7
Q ss_pred hCCCCHHHHHHHHHHHHHccCcHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhC
Q 045024 17 ANPDDPSLHLDLGLHLWENSESKEKAAEHFVIAAKL--------NPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLS 88 (1173)
Q Consensus 17 ~~P~~~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~--------~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~ 88 (1173)
.+|....+...+|..|..+|+ |+.|+..++.+++. .|.-......+|.+|.. .+++++|+..|++|+.+.
T Consensus 194 ~~P~~~~~~~~La~~y~~~g~-~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~-~~k~~eAv~ly~~AL~i~ 271 (508)
T KOG1840|consen 194 EDPERLRTLRNLAEMYAVQGR-LEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRS-LGKYDEAVNLYEEALTIR 271 (508)
T ss_pred CCchHHHHHHHHHHHHHHhcc-HHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHH
Confidence 466667777889999999998 99999999999987 55555666679999999 999999999999999752
Q ss_pred -----CCCH---HHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 045024 89 -----PDDS---VSGEALCELLEHGGKESLEVVVCREASDKS--------PRAFWAFRRLGYLQLHHKKWSEAVQSLQHA 152 (1173)
Q Consensus 89 -----p~~~---~a~~~La~~~~~~g~~~~A~~~~~~al~~~--------p~~~~a~~~la~~~~~~g~~~~A~~~l~~a 152 (1173)
++++ .++..||.+|...|++++|..++++++++. |+-...+..++.++...+++++|+.+++++
T Consensus 272 e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~a 351 (508)
T KOG1840|consen 272 EEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKA 351 (508)
T ss_pred HHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 4444 459999999999999999999999997763 233566788999999999999999999999
Q ss_pred HHhC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCChHHHHHHHHHHHHcCChHHHHHH
Q 045024 153 IRGY--------PTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELD--------DTSIFPLLESGNIFLMLGNFRKGVEQ 216 (1173)
Q Consensus 153 l~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--------p~~~~a~~~la~~~~~~g~~~~A~~~ 216 (1173)
+++. |.-+..+.++|.+|...|++++|.+.|++++.+. +.....+..+|..|.+.+++.+|...
T Consensus 352 l~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l 431 (508)
T KOG1840|consen 352 LKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQL 431 (508)
T ss_pred HHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHH
Confidence 8753 2335678999999999999999999999999874 22356778999999999999999999
Q ss_pred HHHHHhhc----CCCHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHH
Q 045024 217 FQLALKIS----SENVSAHYGLASGLLGLAKQCINLGAFRWGASLLEDACKVAE 266 (1173)
Q Consensus 217 ~~~al~~~----p~~~~a~~~la~~~~~l~~~~~a~g~~~~A~~~l~~Al~~~~ 266 (1173)
|.++..+. |+++.. -..|..++..+..+|+++.|.++.+.++..-.
T Consensus 432 ~~~~~~i~~~~g~~~~~~----~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~~~ 481 (508)
T KOG1840|consen 432 FEEAKDIMKLCGPDHPDV----TYTYLNLAALYRAQGNYEAAEELEEKVLNARE 481 (508)
T ss_pred HHHHHHHHHHhCCCCCch----HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH
Confidence 99988753 444322 22444455555556668777777666665433
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.53 E-value=7.1e-11 Score=125.34 Aligned_cols=402 Identities=14% Similarity=0.037 Sum_probs=261.7
Q ss_pred ChHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHH
Q 045024 2 DEKGALLLQLEDSLEANPDD-PSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKC 80 (1173)
Q Consensus 2 d~~~aAi~~l~~al~~~P~~-~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~ 80 (1173)
|+.|+ +..++-.+..+.+. .+.-..+|.+++..|+ |++|...|.-+.+.+.-+.+.+..++-+++- .|.|.+|...
T Consensus 37 DytGA-islLefk~~~~~EEE~~~~lWia~C~fhLgd-Y~~Al~~Y~~~~~~~~~~~el~vnLAcc~Fy-Lg~Y~eA~~~ 113 (557)
T KOG3785|consen 37 DYTGA-ISLLEFKLNLDREEEDSLQLWIAHCYFHLGD-YEEALNVYTFLMNKDDAPAELGVNLACCKFY-LGQYIEAKSI 113 (557)
T ss_pred cchhH-HHHHHHhhccchhhhHHHHHHHHHHHHhhcc-HHHHHHHHHHHhccCCCCcccchhHHHHHHH-HHHHHHHHHH
Confidence 56777 88777777655443 3566778999999998 9999999999988777778999999999999 9999999877
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 045024 81 YQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSP 160 (1173)
Q Consensus 81 ~~~al~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~ 160 (1173)
-.+ .|+++--...+-.+..+.|+-++-...-+. +.. ..+-...++.+.+..-.|++|+.+|++++..+|+..
T Consensus 114 ~~k----a~k~pL~~RLlfhlahklndEk~~~~fh~~-LqD---~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~ 185 (557)
T KOG3785|consen 114 AEK----APKTPLCIRLLFHLAHKLNDEKRILTFHSS-LQD---TLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYI 185 (557)
T ss_pred Hhh----CCCChHHHHHHHHHHHHhCcHHHHHHHHHH-Hhh---hHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhh
Confidence 665 477776666666666777776554443333 322 224456788888888899999999999999999998
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhc-CCCHHHHHHHHHHHH
Q 045024 161 HLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKIS-SENVSAHYGLASGLL 239 (1173)
Q Consensus 161 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~la~~~~ 239 (1173)
..-..++.+|.++.-++-+.+.+.-.++..|+++.+....+-..+++=+-..|........... ...+... -+.
T Consensus 186 alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~-----~l~ 260 (557)
T KOG3785|consen 186 ALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIE-----YLC 260 (557)
T ss_pred hhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHH-----HHH
Confidence 8999999999999999999999999999999999999888888777644444444444433321 1112111 111
Q ss_pred HHHHHHHHhhcHHHHHHHHHHHHHHHHHHhh----hcCChHHHHHHhchHHHHHhhccchhhhhhchhhhhhhhhhhhHh
Q 045024 240 GLAKQCINLGAFRWGASLLEDACKVAEANTR----LAGNMSCIWKLHGDIQLTYAKCFPWAEERQSLEFDVETFSASIVS 315 (1173)
Q Consensus 240 ~l~~~~~a~g~~~~A~~~l~~Al~~~~~~~~----~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 315 (1173)
+..-. -|.. -+-|++.++.... ..-++...+...+++
T Consensus 261 rHNLV-----vFrn----gEgALqVLP~L~~~IPEARlNL~iYyL~q~dV------------------------------ 301 (557)
T KOG3785|consen 261 RHNLV-----VFRN----GEGALQVLPSLMKHIPEARLNLIIYYLNQNDV------------------------------ 301 (557)
T ss_pred HcCeE-----EEeC----CccHHHhchHHHhhChHhhhhheeeecccccH------------------------------
Confidence 11000 0000 0223333333222 222222222223332
Q ss_pred hHhhhhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHhhhhhhhhhHHHHHHHHHHHhhcCCC------HHH
Q 045024 316 WKTTCLMAAISSKSSYQRALYLAPWQANIYTDIAITSDLIYSLNEAYGHYQSAWHVSEKMALGALLLEGDN------CQF 389 (1173)
Q Consensus 316 ~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~A~k~~~~al~~~p~~------~~~ 389 (1173)
++|+...+ +++|..|.-+...|.+....|+--..... ++.|...++ +-..+ ...
T Consensus 302 ---------qeA~~L~K---dl~PttP~EyilKgvv~aalGQe~gSreH----lKiAqqffq----lVG~Sa~ecDTIpG 361 (557)
T KOG3785|consen 302 ---------QEAISLCK---DLDPTTPYEYILKGVVFAALGQETGSREH----LKIAQQFFQ----LVGESALECDTIPG 361 (557)
T ss_pred ---------HHHHHHHh---hcCCCChHHHHHHHHHHHHhhhhcCcHHH----HHHHHHHHH----Hhcccccccccccc
Confidence 34444333 57888888888888888888876544332 222222222 11111 001
Q ss_pred HHHHHHhhc---ccHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhHHHHhHHHHHHhc
Q 045024 390 WVTLGCLSN---YNGLKQHALIRGLQLDVSLADAWAHIGKLYGEVGEKKLARQAFDSARSIDPSLALPWAGMSADVQASE 466 (1173)
Q Consensus 390 ~~~Lg~~~~---~~~~a~~a~~kal~l~p~~~~a~~~Lg~~y~~~g~~e~A~~~f~~al~~~P~~~~a~~~l~a~~~~~~ 466 (1173)
...++...+ +.+.....+...-..-.++....+++++++...|++.+|.+.|-+....+-.+...+..+++.+|.+.
T Consensus 362 RQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~n 441 (557)
T KOG3785|consen 362 RQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRN 441 (557)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhc
Confidence 111111111 12222222222223344566778899999999999999999998877666556667777789999999
Q ss_pred CCHHHHHHHHHH
Q 045024 467 SLVDDAFESCLR 478 (1173)
Q Consensus 467 g~~~eA~~~~~~ 478 (1173)
|+++-|.+++-+
T Consensus 442 kkP~lAW~~~lk 453 (557)
T KOG3785|consen 442 KKPQLAWDMMLK 453 (557)
T ss_pred CCchHHHHHHHh
Confidence 999988876643
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.51 E-value=2e-11 Score=142.40 Aligned_cols=204 Identities=13% Similarity=0.112 Sum_probs=163.2
Q ss_pred CCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHH
Q 045024 53 NPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDD---SVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAF 129 (1173)
Q Consensus 53 ~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~---~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~ 129 (1173)
+|+++.++..+|.++.. .|+.+.+...+.++.+..|.+ .+.....+.++...|++++|...++++++.+|++..++
T Consensus 2 dp~~~~a~~~~a~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~ 80 (355)
T cd05804 2 DPDFALGHAAAALLLLL-GGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLAL 80 (355)
T ss_pred CCccHHHHHHHHHHHHh-cCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHH
Confidence 79999999999999999 999999999999998887755 44577788899999999999999999999999998777
Q ss_pred HHHHHHHHHcCCH----HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 045024 130 RRLGYLQLHHKKW----SEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFL 205 (1173)
Q Consensus 130 ~~la~~~~~~g~~----~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~ 205 (1173)
.. +..+...|++ ..+...+......+|........+|.++...|++++|+..++++++.+|++..++..+|.++.
T Consensus 81 ~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~ 159 (355)
T cd05804 81 KL-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLE 159 (355)
T ss_pred HH-hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHH
Confidence 65 5555555544 444444444335667778888899999999999999999999999999999999999999999
Q ss_pred HcCChHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHH
Q 045024 206 MLGNFRKGVEQFQLALKISSENVSAHYGLASGLLGLAKQCINLGAFRWGASLLEDA 261 (1173)
Q Consensus 206 ~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~l~~~~~a~g~~~~A~~~l~~A 261 (1173)
..|++++|+..+++++...|.++... ...+..++..+...|++++|...++++
T Consensus 160 ~~g~~~eA~~~l~~~l~~~~~~~~~~---~~~~~~la~~~~~~G~~~~A~~~~~~~ 212 (355)
T cd05804 160 MQGRFKEGIAFMESWRDTWDCSSMLR---GHNWWHLALFYLERGDYEAALAIYDTH 212 (355)
T ss_pred HcCCHHHHHHHHHhhhhccCCCcchh---HHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 99999999999999999887543221 123333444444555566666555554
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.1e-12 Score=141.20 Aligned_cols=189 Identities=14% Similarity=0.019 Sum_probs=143.7
Q ss_pred CCCCHHHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHH-
Q 045024 18 NPDDPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNA---VAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSV- 93 (1173)
Q Consensus 18 ~P~~~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~---~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~- 93 (1173)
++..+..++.+|..++..++ +++|+..|++++..+|+++ .+++.+|.++.. .|++++|+..|+++++..|+++.
T Consensus 29 ~~~~~~~~~~~g~~~~~~~~-~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~-~~~~~~A~~~~~~~l~~~p~~~~~ 106 (235)
T TIGR03302 29 EEWPAEELYEEAKEALDSGD-YTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYK-SGDYAEAIAAADRFIRLHPNHPDA 106 (235)
T ss_pred ccCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHCcCCCch
Confidence 34467788888888888776 8888888888888888765 577888888888 88888888888888888887765
Q ss_pred --HHHHHHHHHHHC--------CCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 045024 94 --SGEALCELLEHG--------GKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLW 163 (1173)
Q Consensus 94 --a~~~La~~~~~~--------g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~ 163 (1173)
+++.+|.++... |++++|+..+++++..+|++..++..+..+.... .. .....
T Consensus 107 ~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~----~~-------------~~~~~ 169 (235)
T TIGR03302 107 DYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLR----NR-------------LAGKE 169 (235)
T ss_pred HHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHH----HH-------------HHHHH
Confidence 577778887765 6778888888888888887755543322221110 00 01223
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHcCChHHHHHHHHHHHhhcC
Q 045024 164 EALGLAYHRLGMFSAAIKSYGRAIELDDTS---IFPLLESGNIFLMLGNFRKGVEQFQLALKISS 225 (1173)
Q Consensus 164 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p 225 (1173)
..+|.+|...|++.+|+..++++++..|+. ..+++.+|.++..+|++++|..+++.+....|
T Consensus 170 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 170 LYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 578889999999999999999999997764 57999999999999999999999888776655
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=99.48 E-value=3.1e-12 Score=139.82 Aligned_cols=168 Identities=15% Similarity=0.153 Sum_probs=139.6
Q ss_pred HHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHcc-------
Q 045024 5 GALLLQLEDSLEANPDDP---SLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAV---AFRYLGHYYTRFS------- 71 (1173)
Q Consensus 5 ~aAi~~l~~al~~~P~~~---~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~~---a~~~lg~~~~~~~------- 71 (1173)
..|+..|+++++.+|+++ .+++.+|.+++..++ +++|+..|+++++.+|+++. +++.+|.++.. .
T Consensus 50 ~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~-~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~-~~~~~~~~ 127 (235)
T TIGR03302 50 TEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGD-YAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYN-QIDRVDRD 127 (235)
T ss_pred HHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHH-hcccccCC
Confidence 446999999999999876 688999999999998 99999999999999998776 79999999998 6
Q ss_pred -CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 045024 72 -IDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQ 150 (1173)
Q Consensus 72 -g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~ 150 (1173)
|++++|++.|+++++.+|++..+...+..+....+ . .......+|..++..|++.+|+..++
T Consensus 128 ~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~----~-------------~~~~~~~~a~~~~~~g~~~~A~~~~~ 190 (235)
T TIGR03302 128 QTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRN----R-------------LAGKELYVARFYLKRGAYVAAINRFE 190 (235)
T ss_pred HHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHH----H-------------HHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 88999999999999999999776544433221111 0 11234578889999999999999999
Q ss_pred HHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 045024 151 HAIRGYPTS---PHLWEALGLAYHRLGMFSAAIKSYGRAIELDD 191 (1173)
Q Consensus 151 ~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 191 (1173)
++++..|+. +.++..+|.++...|++++|+.+++......|
T Consensus 191 ~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 191 TVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 999997754 57999999999999999999999888776555
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.48 E-value=4.4e-12 Score=148.32 Aligned_cols=238 Identities=17% Similarity=0.212 Sum_probs=194.2
Q ss_pred CCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh---
Q 045024 53 NPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSL--------SPDDSVSGEALCELLEHGGKESLEVVVCREASDK--- 121 (1173)
Q Consensus 53 ~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~--------~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~--- 121 (1173)
+|....+...+|..|.. .|+++.|+..++++++. .|.-......+|.+|..++++.+|+..|++++.+
T Consensus 195 ~P~~~~~~~~La~~y~~-~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~ 273 (508)
T KOG1840|consen 195 DPERLRTLRNLAEMYAV-QGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREE 273 (508)
T ss_pred CchHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 45556777889999999 99999999999999988 4444444667999999999999999999999876
Q ss_pred -----CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 045024 122 -----SPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGY--------PTSPHLWEALGLAYHRLGMFSAAIKSYGRAIE 188 (1173)
Q Consensus 122 -----~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 188 (1173)
+|.-..++.+||.+|...|++++|..++++++++. |.-...+..++.++...+++++|+.+++++++
T Consensus 274 ~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~ 353 (508)
T KOG1840|consen 274 VFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALK 353 (508)
T ss_pred hcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 34446789999999999999999999999998763 22345678889999999999999999999988
Q ss_pred hC-----CC---ChHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCHH-HHHHHHHHHHHHHHHHHHhhcHHHHHHHHH
Q 045024 189 LD-----DT---SIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVS-AHYGLASGLLGLAKQCINLGAFRWGASLLE 259 (1173)
Q Consensus 189 ~~-----p~---~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~-a~~~la~~~~~l~~~~~a~g~~~~A~~~l~ 259 (1173)
+. ++ -...+.++|.+|..+|++++|.+.|++++.+...... ..+..+..+..++..+...+.+.+|...|.
T Consensus 354 i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~ 433 (508)
T KOG1840|consen 354 IYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFE 433 (508)
T ss_pred HHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHH
Confidence 63 22 3567789999999999999999999999987533221 234556667777777777888999999999
Q ss_pred HHHHHHHHHhhhcCChHHHHHHhchHHHHHhh
Q 045024 260 DACKVAEANTRLAGNMSCIWKLHGDIQLTYAK 291 (1173)
Q Consensus 260 ~Al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 291 (1173)
++..+.+....-.++....+..++..+..+++
T Consensus 434 ~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~ 465 (508)
T KOG1840|consen 434 EAKDIMKLCGPDHPDVTYTYLNLAALYRAQGN 465 (508)
T ss_pred HHHHHHHHhCCCCCchHHHHHHHHHHHHHccc
Confidence 99999966667777877788877777766655
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.47 E-value=8.4e-10 Score=131.07 Aligned_cols=269 Identities=14% Similarity=0.099 Sum_probs=198.4
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-----CCHHHHHH
Q 045024 5 GALLLQLEDSLEANPDDPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFS-----IDTQRAIK 79 (1173)
Q Consensus 5 ~aAi~~l~~al~~~P~~~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~-----g~~~eA~~ 79 (1173)
..|++.+++.-+.-++.....-.+|.++...|+ +++|...|...++.+|++...+..+..+... . .+.+.-..
T Consensus 21 ~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~-~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~-~~~~~~~~~~~~~~ 98 (517)
T PF12569_consen 21 EEALEHLEKNEKQILDKLAVLEKRAELLLKLGR-KEEAEKIYRELIDRNPDNYDYYRGLEEALGL-QLQLSDEDVEKLLE 98 (517)
T ss_pred HHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHCCCcHHHHHHHHHHHhh-hcccccccHHHHHH
Confidence 345888888888888888888889999998887 8999999999999999998888888888743 3 24666778
Q ss_pred HHHHHHhhCCCCHHH------------HHHHHHHH----HHCC-------------CHHH---HHHHHHHHHhh------
Q 045024 80 CYQRAVSLSPDDSVS------------GEALCELL----EHGG-------------KESL---EVVVCREASDK------ 121 (1173)
Q Consensus 80 ~~~~al~~~p~~~~a------------~~~La~~~----~~~g-------------~~~~---A~~~~~~al~~------ 121 (1173)
.|++.....|....+ ....+..| ...| +..+ ....+......
T Consensus 99 ~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~ 178 (517)
T PF12569_consen 99 LYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGS 178 (517)
T ss_pred HHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCC
Confidence 888887777754321 11111111 1111 1111 11112221110
Q ss_pred ----------CCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 045024 122 ----------SPRA-FWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELD 190 (1173)
Q Consensus 122 ----------~p~~-~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 190 (1173)
.|.. .++++.++..|...|++++|+.++++++...|+.++.++..|.++-..|++.+|.+.++.+..++
T Consensus 179 ~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD 258 (517)
T PF12569_consen 179 FSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELD 258 (517)
T ss_pred CCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCC
Confidence 1111 36778899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhcC--CCHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHH
Q 045024 191 DTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISS--ENVSAHYGLASGLLGLAKQCINLGAFRWGASLLEDACKVAEAN 268 (1173)
Q Consensus 191 p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~a~~~la~~~~~l~~~~~a~g~~~~A~~~l~~Al~~~~~~ 268 (1173)
+.+-......+..+.+.|+.++|.+.+......+. .....-..-.......|+.+...|++..|+..|....+.+...
T Consensus 259 ~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~~~ 338 (517)
T PF12569_consen 259 LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHFDDF 338 (517)
T ss_pred hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 99998888999999999999999999888765442 2211122233445667777788888999998888888888876
Q ss_pred hhhcCCh
Q 045024 269 TRLAGNM 275 (1173)
Q Consensus 269 ~~~~~~~ 275 (1173)
.+-.-++
T Consensus 339 ~~DQfDF 345 (517)
T PF12569_consen 339 EEDQFDF 345 (517)
T ss_pred hcccccH
Confidence 6544443
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=3.9e-12 Score=126.78 Aligned_cols=123 Identities=17% Similarity=0.088 Sum_probs=63.6
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhC
Q 045024 9 LQLEDSLEANPDDPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLS 88 (1173)
Q Consensus 9 ~~l~~al~~~P~~~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~ 88 (1173)
..|+++++.+|++ ++.+|.++...|+ +++|+..|++++..+|.++.++..+|.++.. .|++++|+..|+++++++
T Consensus 14 ~~~~~al~~~p~~---~~~~g~~~~~~g~-~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~-~g~~~~A~~~y~~Al~l~ 88 (144)
T PRK15359 14 DILKQLLSVDPET---VYASGYASWQEGD-YSRAVIDFSWLVMAQPWSWRAHIALAGTWMM-LKEYTTAINFYGHALMLD 88 (144)
T ss_pred HHHHHHHHcCHHH---HHHHHHHHHHcCC-HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH-HhhHHHHHHHHHHHHhcC
Confidence 4455555555543 3344555555544 5555555555555555555555555555555 555555555555555555
Q ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q 045024 89 PDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQ 136 (1173)
Q Consensus 89 p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~ 136 (1173)
|+++.+++.+|.++...|++++|+..|+++++..|+++..+..+|.+.
T Consensus 89 p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~ 136 (144)
T PRK15359 89 ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQ 136 (144)
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 555555555555555555555555555555555555555544444443
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=6.6e-12 Score=125.20 Aligned_cols=125 Identities=23% Similarity=0.266 Sum_probs=85.2
Q ss_pred HHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 045024 113 VVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDT 192 (1173)
Q Consensus 113 ~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 192 (1173)
..++++++.+|++ +..+|.++...|++++|+..|++++..+|.+..++..+|.++...|++++|+..|+++++++|+
T Consensus 14 ~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~ 90 (144)
T PRK15359 14 DILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDAS 90 (144)
T ss_pred HHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 4566666666654 3455666677777777777777777777777777777777777777777777777777777777
Q ss_pred ChHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCHHHHHHHHHHHHH
Q 045024 193 SIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLASGLLG 240 (1173)
Q Consensus 193 ~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~ 240 (1173)
++.+++.+|.++...|++++|+..|+++++..|+++..+..++.+...
T Consensus 91 ~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~ 138 (144)
T PRK15359 91 HPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIM 138 (144)
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 777777777777777777777777777777777776666555555544
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.36 E-value=6.5e-09 Score=123.58 Aligned_cols=315 Identities=14% Similarity=0.032 Sum_probs=164.5
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 045024 92 SVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYH 171 (1173)
Q Consensus 92 ~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~ 171 (1173)
.+.....+.++...|++++|++.++.....-.+........|.++..+|++++|...|+..++.+|++...+..+..+..
T Consensus 4 SE~lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g 83 (517)
T PF12569_consen 4 SELLLYKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALG 83 (517)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHh
Confidence 34555566666677777777777766666666666666677777777777777777777777777777766666666653
Q ss_pred HcC-----CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHH
Q 045024 172 RLG-----MFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRK-GVEQFQLALKISSENVSAHYGLASGLLGLAKQC 245 (1173)
Q Consensus 172 ~~g-----~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~-A~~~~~~al~~~p~~~~a~~~la~~~~~l~~~~ 245 (1173)
... +.+.-...|++.....|....+. .+...+..-.++.. +..++...+.. .-|.....+-..|....+
T Consensus 84 ~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~-rl~L~~~~g~~F~~~~~~yl~~~l~K--gvPslF~~lk~Ly~d~~K-- 158 (517)
T PF12569_consen 84 LQLQLSDEDVEKLLELYDELAEKYPRSDAPR-RLPLDFLEGDEFKERLDEYLRPQLRK--GVPSLFSNLKPLYKDPEK-- 158 (517)
T ss_pred hhcccccccHHHHHHHHHHHHHhCccccchh-HhhcccCCHHHHHHHHHHHHHHHHhc--CCchHHHHHHHHHcChhH--
Confidence 222 45555666666666666533221 11111111112222 22333333322 223333333333322111
Q ss_pred HHhhcHHHHHHHHHHHHHHHHHHhhhcCChHHHHHHhchHHHHHhhccchhhhh--hchhhhhhhhhhhhHhhHhhhhHH
Q 045024 246 INLGAFRWGASLLEDACKVAEANTRLAGNMSCIWKLHGDIQLTYAKCFPWAEER--QSLEFDVETFSASIVSWKTTCLMA 323 (1173)
Q Consensus 246 ~a~g~~~~A~~~l~~Al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~~~~~~~~~~ 323 (1173)
. ..+.+.+..+......... ..... .......-.+.-..+..-+...|+
T Consensus 159 -----~----~~i~~l~~~~~~~l~~~~~--------------------~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~ 209 (517)
T PF12569_consen 159 -----A----AIIESLVEEYVNSLESNGS--------------------FSNGDDEEKEPPSTLLWTLYFLAQHYDYLGD 209 (517)
T ss_pred -----H----HHHHHHHHHHHHhhcccCC--------------------CCCccccccCCchHHHHHHHHHHHHHHHhCC
Confidence 0 0011111111110000000 00000 000000000000111111222333
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHhhhhhhhhhHHHHHHHHHHHhhcCCCHHHHHHHHHhhcccHHH
Q 045024 324 AISSKSSYQRALYLAPWQANIYTDIAITSDLIYSLNEAYGHYQSAWHVSEKMALGALLLEGDNCQFWVTLGCLSNYNGLK 403 (1173)
Q Consensus 324 ~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~A~k~~~~al~~~p~~~~~~~~Lg~~~~~~~~a 403 (1173)
+++|+...+++++.+|..++.+...|.++.+.|++.+|
T Consensus 210 ~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~A------------------------------------------ 247 (517)
T PF12569_consen 210 YEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEA------------------------------------------ 247 (517)
T ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHH------------------------------------------
Confidence 44555555555555555555555555555555555444
Q ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC--CC-----hhHHHHh-HHHHHHhcCCHHHHHHH
Q 045024 404 QHALIRGLQLDVSLADAWAHIGKLYGEVGEKKLARQAFDSARSIDP--SL-----ALPWAGM-SADVQASESLVDDAFES 475 (1173)
Q Consensus 404 ~~a~~kal~l~p~~~~a~~~Lg~~y~~~g~~e~A~~~f~~al~~~P--~~-----~~a~~~l-~a~~~~~~g~~~eA~~~ 475 (1173)
.+.++.+-.+|+.|-.+....+..+++.|+.++|.+.+..-...+- .. .-.|+.. .|.+|.+.|++..|+..
T Consensus 248 a~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~ 327 (517)
T PF12569_consen 248 AEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKR 327 (517)
T ss_pred HHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 4567777788888888888889999999999999988887655442 11 1244432 47889999999999999
Q ss_pred HHHHHhc
Q 045024 476 CLRAVQI 482 (1173)
Q Consensus 476 ~~~al~~ 482 (1173)
|..+.++
T Consensus 328 ~~~v~k~ 334 (517)
T PF12569_consen 328 FHAVLKH 334 (517)
T ss_pred HHHHHHH
Confidence 9888776
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=5.7e-11 Score=124.96 Aligned_cols=155 Identities=17% Similarity=0.218 Sum_probs=119.7
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHH
Q 045024 64 GHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWS 143 (1173)
Q Consensus 64 g~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~ 143 (1173)
+..|+. .|+++......++.. +|.. -+...++.++++..++++++.+|+++..|..+|.++...|+++
T Consensus 23 ~~~Y~~-~g~~~~v~~~~~~~~--~~~~---------~~~~~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~ 90 (198)
T PRK10370 23 VGSYLL-SPKWQAVRAEYQRLA--DPLH---------QFASQQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYD 90 (198)
T ss_pred HHHHHH-cchHHHHHHHHHHHh--Cccc---------cccCchhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHH
Confidence 455667 788777654443221 2221 1112566788888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHH-HHcCC--HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHH
Q 045024 144 EAVQSLQHAIRGYPTSPHLWEALGLAY-HRLGM--FSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLA 220 (1173)
Q Consensus 144 ~A~~~l~~al~~~p~~~~~~~~la~~~-~~~g~--~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~a 220 (1173)
+|+..|+++++++|+++.++..+|.++ ...|+ +++|.+.++++++.+|+++.++..+|..+...|++++|+..++++
T Consensus 91 ~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~a 170 (198)
T PRK10370 91 NALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKV 170 (198)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 888888888888888888888888864 66677 588888888888888888888888888888888888888888888
Q ss_pred HhhcCCCHHH
Q 045024 221 LKISSENVSA 230 (1173)
Q Consensus 221 l~~~p~~~~a 230 (1173)
++..|.+..-
T Consensus 171 L~l~~~~~~r 180 (198)
T PRK10370 171 LDLNSPRVNR 180 (198)
T ss_pred HhhCCCCccH
Confidence 8888776543
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.5e-09 Score=111.59 Aligned_cols=204 Identities=15% Similarity=0.140 Sum_probs=177.7
Q ss_pred cHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHH
Q 045024 38 SKEKAAEHFVIAAKL------NPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLE 111 (1173)
Q Consensus 38 ~~~~A~~~~~~al~~------~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~~g~~~~A 111 (1173)
+.++-++++...+.. .|+.-..+-....+... .|+.+-|..++++.....|++..+....|..+...|++++|
T Consensus 27 nseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld-~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A 105 (289)
T KOG3060|consen 27 NSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALD-TGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEA 105 (289)
T ss_pred CHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhH
Confidence 367777777766643 33334455556667777 89999999999999888899999999999999999999999
Q ss_pred HHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 045024 112 VVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDD 191 (1173)
Q Consensus 112 ~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 191 (1173)
+++|+..++.+|.+...+...--+...+|+.-+|++.+...++..+.|.++|..++.+|...|+|++|.-++++.+-+.|
T Consensus 106 ~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P 185 (289)
T KOG3060|consen 106 IEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQP 185 (289)
T ss_pred HHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCC
Confidence 99999999999999999988888888999999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHcCC---hHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHH
Q 045024 192 TSIFPLLESGNIFLMLGN---FRKGVEQFQLALKISSENVSAHYGLASGLLGLA 242 (1173)
Q Consensus 192 ~~~~a~~~la~~~~~~g~---~~~A~~~~~~al~~~p~~~~a~~~la~~~~~l~ 242 (1173)
.++.....+|.+++.+|. +.-|.++|.++++++|.+..+++++-.+-..+.
T Consensus 186 ~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI~lc~~~la 239 (289)
T KOG3060|consen 186 FNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGIYLCGSALA 239 (289)
T ss_pred CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHHHHHHHHHH
Confidence 999999999999988874 567999999999999988888877655544443
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.1e-10 Score=121.28 Aligned_cols=180 Identities=18% Similarity=0.135 Sum_probs=157.9
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q 045024 39 KEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREA 118 (1173)
Q Consensus 39 ~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~a 118 (1173)
...+...+-+....+|++..+ ..++..+.. .|+-+.+..+..++...+|.+......+|......|++.+|+..++++
T Consensus 49 ~~~a~~al~~~~~~~p~d~~i-~~~a~a~~~-~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA 126 (257)
T COG5010 49 TQGAAAALGAAVLRNPEDLSI-AKLATALYL-RGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKA 126 (257)
T ss_pred hhHHHHHHHHHHhcCcchHHH-HHHHHHHHh-cccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 355666777777788988888 888888888 899999998888888888888888888899999999999999999999
Q ss_pred HhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHH
Q 045024 119 SDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLL 198 (1173)
Q Consensus 119 l~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~ 198 (1173)
....|++..+|..+|.+|.+.|++++|...|.+++++.|+++.+..++|..|.-.|+++.|...+..+....+.+..+..
T Consensus 127 ~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~ 206 (257)
T COG5010 127 ARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQ 206 (257)
T ss_pred hccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999998888888888889
Q ss_pred HHHHHHHHcCChHHHHHHHHHH
Q 045024 199 ESGNIFLMLGNFRKGVEQFQLA 220 (1173)
Q Consensus 199 ~la~~~~~~g~~~~A~~~~~~a 220 (1173)
+++.+....|++++|...-.+-
T Consensus 207 NLAl~~~~~g~~~~A~~i~~~e 228 (257)
T COG5010 207 NLALVVGLQGDFREAEDIAVQE 228 (257)
T ss_pred HHHHHHhhcCChHHHHhhcccc
Confidence 9999999999999988776553
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.30 E-value=2.2e-10 Score=119.13 Aligned_cols=171 Identities=22% Similarity=0.214 Sum_probs=103.0
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 045024 77 AIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGY 156 (1173)
Q Consensus 77 A~~~~~~al~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~ 156 (1173)
+...+-+....+|++..+ ..++..+...|+-+.+..+..++....|.+......+|...+..|++.+|+..++++....
T Consensus 52 a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~ 130 (257)
T COG5010 52 AAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA 130 (257)
T ss_pred HHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC
Confidence 444444455555666655 5666666666666666666666555556665555556666666666666666666666666
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCHHHHHHHHH
Q 045024 157 PTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLAS 236 (1173)
Q Consensus 157 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~ 236 (1173)
|++..+|..+|.+|.+.|+++.|...|.+++++.|+++.+..++|..+.-.|+++.|..++..+....+.+..+..+++.
T Consensus 131 p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl 210 (257)
T COG5010 131 PTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLAL 210 (257)
T ss_pred CCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHH
Confidence 66666666666666666666666666666666666666666666666666666666666666665555555555556666
Q ss_pred HHHHHHHHHHHh
Q 045024 237 GLLGLAKQCINL 248 (1173)
Q Consensus 237 ~~~~l~~~~~a~ 248 (1173)
+....|+..++.
T Consensus 211 ~~~~~g~~~~A~ 222 (257)
T COG5010 211 VVGLQGDFREAE 222 (257)
T ss_pred HHhhcCChHHHH
Confidence 665555544443
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.1e-08 Score=106.78 Aligned_cols=186 Identities=11% Similarity=0.094 Sum_probs=157.8
Q ss_pred HccCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHH
Q 045024 34 ENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVV 113 (1173)
Q Consensus 34 ~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~~g~~~~A~~ 113 (1173)
+..+ |++|++++..-.+.+|.+...+..+|.+|.. ..+|..|..+|++.-.+.|......+..+..+++.+.+..|+.
T Consensus 22 ~d~r-y~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~-~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALr 99 (459)
T KOG4340|consen 22 RDAR-YADAIQLLGSELERSPRSRAGLSLLGYCYYR-LQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALR 99 (459)
T ss_pred HHhh-HHHHHHHHHHHHhcCccchHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHH
Confidence 4444 9999999999999999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 045024 114 VCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTS 193 (1173)
Q Consensus 114 ~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 193 (1173)
+...+.....-.......-+-+.+..+++..+....++.- ..++.....+.|-+.++.|++++|++-|+.+++...-+
T Consensus 100 V~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp--~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyq 177 (459)
T KOG4340|consen 100 VAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLP--SENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQ 177 (459)
T ss_pred HHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhcc--CCCccchhccchheeeccccHHHHHHHHHHHHhhcCCC
Confidence 9877654311123445555667777888888877666531 12567888999999999999999999999999998888
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHHhh
Q 045024 194 IFPLLESGNIFLMLGNFRKGVEQFQLALKI 223 (1173)
Q Consensus 194 ~~a~~~la~~~~~~g~~~~A~~~~~~al~~ 223 (1173)
+..-++++.++++.|+++.|+++..++++.
T Consensus 178 pllAYniALaHy~~~qyasALk~iSEIieR 207 (459)
T KOG4340|consen 178 PLLAYNLALAHYSSRQYASALKHISEIIER 207 (459)
T ss_pred chhHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 888999999999999999999988887764
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.4e-08 Score=109.43 Aligned_cols=298 Identities=14% Similarity=-0.005 Sum_probs=198.3
Q ss_pred HHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHH
Q 045024 99 CELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYP-TSPHLWEALGLAYHRLGMFS 177 (1173)
Q Consensus 99 a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p-~~~~~~~~la~~~~~~g~~~ 177 (1173)
|..-...|+|.+|.....+.-+..+.....+..-+...-+.||++.|-.++.++-+..+ +........+.+....|+++
T Consensus 91 gl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~ 170 (400)
T COG3071 91 GLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYP 170 (400)
T ss_pred HHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCch
Confidence 44445678888888888887777777777777777888888888888888888887733 33456677788888888888
Q ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhhcHHHHHHH
Q 045024 178 AAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLASGLLGLAKQCINLGAFRWGASL 257 (1173)
Q Consensus 178 ~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~l~~~~~a~g~~~~A~~~ 257 (1173)
.|.....+++++.|.++.++.....+|...|++.+....+.+.-+..--+.+-... +..... .|-
T Consensus 171 aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~----le~~a~----~gl------- 235 (400)
T COG3071 171 AARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAAR----LEQQAW----EGL------- 235 (400)
T ss_pred hHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHH----HHHHHH----HHH-------
Confidence 88888888888888888888888888888888888888877776643322211100 000000 000
Q ss_pred HHHHHHHHHHHhhhcCChHHHHHHhchHHHHHhhccchhhhhhchhhhhhhhhhhhHhhHhhhhHHHHHHHHHHHHHHhc
Q 045024 258 LEDACKVAEANTRLAGNMSCIWKLHGDIQLTYAKCFPWAEERQSLEFDVETFSASIVSWKTTCLMAAISSKSSYQRALYL 337 (1173)
Q Consensus 258 l~~Al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l 337 (1173)
++++.. .... ++=...++..-..
T Consensus 236 L~q~~~-------~~~~--------------------------------------------------~gL~~~W~~~pr~ 258 (400)
T COG3071 236 LQQARD-------DNGS--------------------------------------------------EGLKTWWKNQPRK 258 (400)
T ss_pred HHHHhc-------cccc--------------------------------------------------hHHHHHHHhccHH
Confidence 000000 0000 0000111111111
Q ss_pred CCCCHHHHHHHHHHHHHHhhHHHhhhhhhhhhHHHHHHHHHHHhhcCCCHHHHHHHHHhhc-ccHHHHHHHHHHHhcCCC
Q 045024 338 APWQANIYTDIAITSDLIYSLNEAYGHYQSAWHVSEKMALGALLLEGDNCQFWVTLGCLSN-YNGLKQHALIRGLQLDVS 416 (1173)
Q Consensus 338 ~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~A~k~~~~al~~~p~~~~~~~~Lg~~~~-~~~~a~~a~~kal~l~p~ 416 (1173)
-..++.+...++.-+...|+.++|.. +...+++..-+.. ....++.+-. ++..-++..++.++..|+
T Consensus 259 lr~~p~l~~~~a~~li~l~~~~~A~~-----------~i~~~Lk~~~D~~-L~~~~~~l~~~d~~~l~k~~e~~l~~h~~ 326 (400)
T COG3071 259 LRNDPELVVAYAERLIRLGDHDEAQE-----------IIEDALKRQWDPR-LCRLIPRLRPGDPEPLIKAAEKWLKQHPE 326 (400)
T ss_pred hhcChhHHHHHHHHHHHcCChHHHHH-----------HHHHHHHhccChh-HHHHHhhcCCCCchHHHHHHHHHHHhCCC
Confidence 22345566666666667777777633 3334444333322 2222333322 555667788999999999
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhHHHHhHHHHHHhcCCHHHHHHHHHHHHhc
Q 045024 417 LADAWAHIGKLYGEVGEKKLARQAFDSARSIDPSLALPWAGMSADVQASESLVDDAFESCLRAVQI 482 (1173)
Q Consensus 417 ~~~a~~~Lg~~y~~~g~~e~A~~~f~~al~~~P~~~~a~~~l~a~~~~~~g~~~eA~~~~~~al~~ 482 (1173)
+|..+..||.++.+.+.|.+|..+|+.+++..|+.. .+. +++.++.+.|+..+|.+.+++++..
T Consensus 327 ~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~-~~~-~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 327 DPLLLSTLGRLALKNKLWGKASEALEAALKLRPSAS-DYA-ELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred ChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChh-hHH-HHHHHHHHcCChHHHHHHHHHHHHH
Confidence 999999999999999999999999999999988753 333 3788999999999999999988754
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=3.2e-10 Score=139.81 Aligned_cols=206 Identities=10% Similarity=-0.008 Sum_probs=182.2
Q ss_pred HhCCCCHHHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCH---
Q 045024 16 EANPDDPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDS--- 92 (1173)
Q Consensus 16 ~~~P~~~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~--- 92 (1173)
..+|.+..++..+...+...++ +++|+...+.+++..|+...+++.+|.++.+ .+++.++... +++...+.+.
T Consensus 25 ~~~p~n~~a~~~Li~~~~~~~~-~deai~i~~~~l~~~P~~i~~yy~~G~l~~q-~~~~~~~~lv--~~l~~~~~~~~~~ 100 (906)
T PRK14720 25 NYSLSKFKELDDLIDAYKSENL-TDEAKDICEEHLKEHKKSISALYISGILSLS-RRPLNDSNLL--NLIDSFSQNLKWA 100 (906)
T ss_pred cCCcchHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHhCCcceehHHHHHHHHHh-hcchhhhhhh--hhhhhcccccchh
Confidence 3578899999999999988887 9999999999999999999999999999999 9888877766 6666655555
Q ss_pred ----------------HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 045024 93 ----------------VSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGY 156 (1173)
Q Consensus 93 ----------------~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~ 156 (1173)
.+++.+|.+|.++|+.++|...|+++++.+|+++.+.+++|..|... +.++|+.++.+++..
T Consensus 101 ~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~- 178 (906)
T PRK14720 101 IVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR- 178 (906)
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH-
Confidence 88999999999999999999999999999999999999999999999 999999999999876
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHH--------HHH------------HHHHHcCChHHHHHH
Q 045024 157 PTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLL--------ESG------------NIFLMLGNFRKGVEQ 216 (1173)
Q Consensus 157 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~--------~la------------~~~~~~g~~~~A~~~ 216 (1173)
++..+++.++.+...+.+..+|++..... .++ ..|...+++++++..
T Consensus 179 -------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~i 245 (906)
T PRK14720 179 -------------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYI 245 (906)
T ss_pred -------------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHH
Confidence 67777899999999999999888765522 223 677888999999999
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHH
Q 045024 217 FQLALKISSENVSAHYGLASGLLG 240 (1173)
Q Consensus 217 ~~~al~~~p~~~~a~~~la~~~~~ 240 (1173)
++.+++.+|+|..+...++.+|..
T Consensus 246 LK~iL~~~~~n~~a~~~l~~~y~~ 269 (906)
T PRK14720 246 LKKILEHDNKNNKAREELIRFYKE 269 (906)
T ss_pred HHHHHhcCCcchhhHHHHHHHHHH
Confidence 999999999999999999999974
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.1e-09 Score=112.48 Aligned_cols=181 Identities=17% Similarity=0.137 Sum_probs=163.5
Q ss_pred HHHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 045024 22 PSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCEL 101 (1173)
Q Consensus 22 ~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~~ 101 (1173)
-..+-....+....++ .+.|..++++.....|.+...-...|..+.. .|++++|+++|+..++-+|.+...+.....+
T Consensus 52 w~l~EqV~IAAld~~~-~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa-~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAi 129 (289)
T KOG3060|consen 52 WTLYEQVFIAALDTGR-DDLAQKCINQLRDRFPGSKRVGKLKAMLLEA-TGNYKEAIEYYESLLEDDPTDTVIRKRKLAI 129 (289)
T ss_pred HHHHHHHHHHHHHhcc-hHHHHHHHHHHHHhCCCChhHHHHHHHHHHH-hhchhhHHHHHHHHhccCcchhHHHHHHHHH
Confidence 3444445555666776 7999999999988889999999999999999 9999999999999999999999999988889
Q ss_pred HHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC---CHHH
Q 045024 102 LEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLG---MFSA 178 (1173)
Q Consensus 102 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g---~~~~ 178 (1173)
...+|+.-+|++.+...++..+.|.++|..++.+|...|+|++|.-++++++-+.|.++-.+..+|.+++-+| ++.-
T Consensus 130 lka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~ 209 (289)
T KOG3060|consen 130 LKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLEL 209 (289)
T ss_pred HHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998876 5667
Q ss_pred HHHHHHHHHHhCCCChHHHHHHHHHH
Q 045024 179 AIKSYGRAIELDDTSIFPLLESGNIF 204 (1173)
Q Consensus 179 A~~~~~~al~~~p~~~~a~~~la~~~ 204 (1173)
|.++|.++++++|.+..+++.+-.+-
T Consensus 210 arkyy~~alkl~~~~~ral~GI~lc~ 235 (289)
T KOG3060|consen 210 ARKYYERALKLNPKNLRALFGIYLCG 235 (289)
T ss_pred HHHHHHHHHHhChHhHHHHHHHHHHH
Confidence 99999999999998888877665543
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.5e-10 Score=121.84 Aligned_cols=125 Identities=10% Similarity=0.095 Sum_probs=116.6
Q ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHH-HHcCC--HHHHHH
Q 045024 71 SIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQ-LHHKK--WSEAVQ 147 (1173)
Q Consensus 71 ~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~-~~~g~--~~~A~~ 147 (1173)
.++.++++..++++++.+|++...|..+|.+|...|++++|+..|+++++..|+++.++..+|.++ ...|+ +++|..
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~ 131 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTRE 131 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHH
Confidence 577889999999999999999999999999999999999999999999999999999999999975 67777 599999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH
Q 045024 148 SLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIF 195 (1173)
Q Consensus 148 ~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 195 (1173)
.++++++.+|+++.++..+|..+...|++++|+..++++++..|.+..
T Consensus 132 ~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~ 179 (198)
T PRK10370 132 MIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVN 179 (198)
T ss_pred HHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc
Confidence 999999999999999999999999999999999999999999887653
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.25 E-value=3e-08 Score=108.66 Aligned_cols=77 Identities=18% Similarity=0.133 Sum_probs=61.3
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHhhhhhhhhhHHHHHHHHHHHhhcCCCHHHHHHHHHhhcccHHHHHHH
Q 045024 328 KSSYQRALYLAPWQANIYTDIAITSDLIYSLNEAYGHYQSAWHVSEKMALGALLLEGDNCQFWVTLGCLSNYNGLKQHAL 407 (1173)
Q Consensus 328 ~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~A~k~~~~al~~~p~~~~~~~~Lg~~~~~~~~a~~a~ 407 (1173)
++..++.++..|+++.++..+|..+.+.+.+.+| .++|
T Consensus 314 ~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA------------------------------------------~~~l 351 (400)
T COG3071 314 IKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKA------------------------------------------SEAL 351 (400)
T ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHH------------------------------------------HHHH
Confidence 3445667777777777777777777777766655 5577
Q ss_pred HHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 045024 408 IRGLQLDVSLADAWAHIGKLYGEVGEKKLARQAFDSARSI 447 (1173)
Q Consensus 408 ~kal~l~p~~~~a~~~Lg~~y~~~g~~e~A~~~f~~al~~ 447 (1173)
+.+++..| +...+..+|.++.+.|+.++|.+.++.++..
T Consensus 352 eaAl~~~~-s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 352 EAALKLRP-SASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred HHHHhcCC-ChhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 77887777 6778999999999999999999999999854
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.6e-09 Score=133.72 Aligned_cols=225 Identities=12% Similarity=0.019 Sum_probs=162.3
Q ss_pred HhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcH----
Q 045024 51 KLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAF---- 126 (1173)
Q Consensus 51 ~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~---- 126 (1173)
..+|.+..++..++..+.. .|++++|+...+.+++.+|+....++.+|.++...+++.++... .++...+.+.
T Consensus 25 ~~~p~n~~a~~~Li~~~~~-~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ 101 (906)
T PRK14720 25 NYSLSKFKELDDLIDAYKS-ENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAI 101 (906)
T ss_pred cCCcchHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhH
Confidence 4578899999999999999 99999999999999999999999999999999999988777766 5555554443
Q ss_pred ---------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 045024 127 ---------------WAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDD 191 (1173)
Q Consensus 127 ---------------~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 191 (1173)
.+++.+|.+|-++|++++|...++++++.+|+++.++.++|..|... +.++|++++.+++..
T Consensus 102 ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~-- 178 (906)
T PRK14720 102 VEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR-- 178 (906)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH--
Confidence 67777777777777777777777777777777777777777777777 777777777777664
Q ss_pred CChHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHhhh
Q 045024 192 TSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLASGLLGLAKQCINLGAFRWGASLLEDACKVAEANTRL 271 (1173)
Q Consensus 192 ~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~l~~~~~a~g~~~~A~~~l~~Al~~~~~~~~~ 271 (1173)
+...+++.++.+++.+.+..+|++......+-...... .| +..+...+...
T Consensus 179 ------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~------~~-~~~~~~~~~~l---------- 229 (906)
T PRK14720 179 ------------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGH------RE-FTRLVGLLEDL---------- 229 (906)
T ss_pred ------------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhh------hc-cchhHHHHHHH----------
Confidence 55556777777777777777777665433222111110 00 11111111111
Q ss_pred cCChHHHHHHhchHHHHHhhccchhhhhhchhhhhhhhhhhhHhhHhhhhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 045024 272 AGNMSCIWKLHGDIQLTYAKCFPWAEERQSLEFDVETFSASIVSWKTTCLMAAISSKSSYQRALYLAPWQANIYTDIAIT 351 (1173)
Q Consensus 272 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~ 351 (1173)
...+....++++++..++.+++.+|.+..+...++.+
T Consensus 230 -------------------------------------------~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~ 266 (906)
T PRK14720 230 -------------------------------------------YEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRF 266 (906)
T ss_pred -------------------------------------------HHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHH
Confidence 1112223346689999999999999999999999999
Q ss_pred HH
Q 045024 352 SD 353 (1173)
Q Consensus 352 ~~ 353 (1173)
|.
T Consensus 267 y~ 268 (906)
T PRK14720 267 YK 268 (906)
T ss_pred HH
Confidence 87
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=4.9e-10 Score=137.88 Aligned_cols=144 Identities=12% Similarity=0.057 Sum_probs=118.6
Q ss_pred HhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 045024 85 VSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWE 164 (1173)
Q Consensus 85 l~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~ 164 (1173)
....|.+++++..||.+....|.+++|...++.+++..|++..++..++.++.+.+++++|+..+++++..+|+++..++
T Consensus 79 ~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~ 158 (694)
T PRK15179 79 VRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREIL 158 (694)
T ss_pred HHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHH
Confidence 34467778888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCH
Q 045024 165 ALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENV 228 (1173)
Q Consensus 165 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 228 (1173)
.+|.++.+.|++++|+..|++++..+|++..++..+|.++...|+.++|...|+++++...+-.
T Consensus 159 ~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~ 222 (694)
T PRK15179 159 LEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGA 222 (694)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcch
Confidence 8888888888888888888888887788888888888888888888888888888887765544
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.1e-09 Score=134.87 Aligned_cols=155 Identities=7% Similarity=-0.055 Sum_probs=140.3
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Q 045024 41 KAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASD 120 (1173)
Q Consensus 41 ~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~ 120 (1173)
+++..........|.++++++.+|.+... .|.+++|...+++++++.|++..++..++.++.+.+++++|+..+++++.
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~La~i~~~-~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~ 148 (694)
T PRK15179 70 AALPELLDYVRRYPHTELFQVLVARALEA-AHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS 148 (694)
T ss_pred hhHHHHHHHHHhccccHHHHHHHHHHHHH-cCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh
Confidence 33444444456788899999999999999 99999999999999999999999999999999999999999999999999
Q ss_pred hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHH
Q 045024 121 KSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFP 196 (1173)
Q Consensus 121 ~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a 196 (1173)
.+|+++.+++.+|.++...|++++|+..|++++..+|+++.++..+|.++...|+.++|...|+++++...+-...
T Consensus 149 ~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~ 224 (694)
T PRK15179 149 GGSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARK 224 (694)
T ss_pred cCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999887655444
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.22 E-value=5.1e-08 Score=101.89 Aligned_cols=173 Identities=12% Similarity=0.046 Sum_probs=145.5
Q ss_pred HHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 045024 68 TRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQ 147 (1173)
Q Consensus 68 ~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~ 147 (1173)
.+ ..+|.+|++++..-.+.+|.+...+..+|.+|+...++..|..+|++.-...|......+..+..+++.+.+..|+.
T Consensus 21 I~-d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALr 99 (459)
T KOG4340|consen 21 IR-DARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALR 99 (459)
T ss_pred HH-HhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHH
Confidence 56 78899999999999999999999999999999999999999999999999999988888889999999999999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCC
Q 045024 148 SLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSEN 227 (1173)
Q Consensus 148 ~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 227 (1173)
+...+.....-.......-+.+.+..+++..+....++.- ..+......+.|-+.++.|++++|++-|+.+++...-+
T Consensus 100 V~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp--~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyq 177 (459)
T KOG4340|consen 100 VAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLP--SENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQ 177 (459)
T ss_pred HHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhcc--CCCccchhccchheeeccccHHHHHHHHHHHHhhcCCC
Confidence 8877654311123344445666777888888877766532 12467788899999999999999999999999999888
Q ss_pred HHHHHHHHHHHHHHHH
Q 045024 228 VSAHYGLASGLLGLAK 243 (1173)
Q Consensus 228 ~~a~~~la~~~~~l~~ 243 (1173)
+..-++++.++.+.++
T Consensus 178 pllAYniALaHy~~~q 193 (459)
T KOG4340|consen 178 PLLAYNLALAHYSSRQ 193 (459)
T ss_pred chhHHHHHHHHHhhhh
Confidence 8888899998888777
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=7.5e-08 Score=126.98 Aligned_cols=399 Identities=12% Similarity=-0.062 Sum_probs=210.6
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh-hCCCcHHHHHHHHHHHH
Q 045024 59 AFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASD-KSPRAFWAFRRLGYLQL 137 (1173)
Q Consensus 59 a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~-~~p~~~~a~~~la~~~~ 137 (1173)
.+...+..+.. .|++.+|...+..+-.. +.-.......+......|++..+...+..+-. ....++......+.++.
T Consensus 343 lh~raa~~~~~-~g~~~~Al~~a~~a~d~-~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~ 420 (903)
T PRK04841 343 LHRAAAEAWLA-QGFPSEAIHHALAAGDA-QLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQ 420 (903)
T ss_pred HHHHHHHHHHH-CCCHHHHHHHHHHCCCH-HHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHH
Confidence 33444555556 66666666544433110 00011233445555566666665555443310 11122334445566666
Q ss_pred HcCCHHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----hHHHHHHHHH
Q 045024 138 HHKKWSEAVQSLQHAIRGYPT---------SPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTS-----IFPLLESGNI 203 (1173)
Q Consensus 138 ~~g~~~~A~~~l~~al~~~p~---------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----~~a~~~la~~ 203 (1173)
..|++++|...+..+....+. .......++.++...|++++|...++++++..+.. ..+...+|.+
T Consensus 421 ~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~ 500 (903)
T PRK04841 421 SQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEV 500 (903)
T ss_pred HCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHH
Confidence 677777777777666543211 12233445666667777777777777776643332 1234556666
Q ss_pred HHHcCChHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHhhhcCChHHHHHHhc
Q 045024 204 FLMLGNFRKGVEQFQLALKISSENVSAHYGLASGLLGLAKQCINLGAFRWGASLLEDACKVAEANTRLAGNMSCIWKLHG 283 (1173)
Q Consensus 204 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~l~~~~~a~g~~~~A~~~l~~Al~~~~~~~~~~~~~~~~~~~~g 283 (1173)
+...|++++|...+++++........ ....+.++..++..+...|+++.|...+++++.........
T Consensus 501 ~~~~G~~~~A~~~~~~al~~~~~~g~-~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~------------ 567 (903)
T PRK04841 501 HHCKGELARALAMMQQTEQMARQHDV-YHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLE------------ 567 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhhcc-hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccc------------
Confidence 66777777777777777655332211 11223344444555555666666666665555433221000
Q ss_pred hHHHHHhhccchhhhhhchhhhhhhhhhhhHhhHhhhhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHhhh
Q 045024 284 DIQLTYAKCFPWAEERQSLEFDVETFSASIVSWKTTCLMAAISSKSSYQRALYLAPWQANIYTDIAITSDLIYSLNEAYG 363 (1173)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~ 363 (1173)
..+....++..++.++...|++++|..
T Consensus 568 -----------------------------------------------------~~~~~~~~~~~la~~~~~~G~~~~A~~ 594 (903)
T PRK04841 568 -----------------------------------------------------QLPMHEFLLRIRAQLLWEWARLDEAEQ 594 (903)
T ss_pred -----------------------------------------------------cccHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 001011223345556666666666632
Q ss_pred hhhhhhHHHHHHHHHHHhhcCCCHHHHHHHHHhhcccHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 045024 364 HYQSAWHVSEKMALGALLLEGDNCQFWVTLGCLSNYNGLKQHALIRGLQLD-VSLADAWAHIGKLYGEVGEKKLARQAFD 442 (1173)
Q Consensus 364 ~~~~~~~~A~k~~~~al~~~p~~~~~~~~Lg~~~~~~~~a~~a~~kal~l~-p~~~~a~~~Lg~~y~~~g~~e~A~~~f~ 442 (1173)
... +++... -... +....++..+|.++...|++++|...++
T Consensus 595 ~~~-----------~al~~~---------------------------~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~ 636 (903)
T PRK04841 595 CAR-----------KGLEVL---------------------------SNYQPQQQLQCLAMLAKISLARGDLDNARRYLN 636 (903)
T ss_pred HHH-----------HhHHhh---------------------------hccCchHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 211 111100 0001 1134556667888888888888888888
Q ss_pred HHHhhCCCCh--hHHHH----hHHHHHHhcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 045024 443 SARSIDPSLA--LPWAG----MSADVQASESLVDDAFESCLRAVQILPLAEFQIGLAKLAKLSGHLSSSQVFGAIQQAIQ 516 (1173)
Q Consensus 443 ~al~~~P~~~--~a~~~----l~a~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~la~l~~~~g~~~~~~A~~~l~~al~ 516 (1173)
++..+.+... ..+.. .....+...|+.+.|...+.......+...
T Consensus 637 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~----------------------------- 687 (903)
T PRK04841 637 RLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANN----------------------------- 687 (903)
T ss_pred HHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccc-----------------------------
Confidence 8776533221 11110 011233346666666665544332110000
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 045024 517 RGPHYPESHNLYGLVCEARSDYQAAVVSYRLARYAISSSSGTVPNSHFQDISINLARSLSRAGNALDAVRECESLERQGM 596 (1173)
Q Consensus 517 ~~P~~~~a~~~lg~i~~~~g~~~~A~~~~~kAl~l~~~~pe~~~~~~~~~~~~~La~~~~~~g~~~eAi~~~~~~~~~~p 596 (1173)
......+..+|.++...|++++|...+++++...+.... ......++..+|.++...|+.++|...+.++++...
T Consensus 688 --~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~---~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~ 762 (903)
T PRK04841 688 --HFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRL---MSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLAN 762 (903)
T ss_pred --hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCc---hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhC
Confidence 001123456888899999999999999999776543321 223455777888889999999999999999887653
Q ss_pred C
Q 045024 597 L 597 (1173)
Q Consensus 597 ~ 597 (1173)
.
T Consensus 763 ~ 763 (903)
T PRK04841 763 R 763 (903)
T ss_pred c
Confidence 3
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=99.19 E-value=5e-10 Score=110.83 Aligned_cols=109 Identities=18% Similarity=0.120 Sum_probs=41.6
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 045024 83 RAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHL 162 (1173)
Q Consensus 83 ~al~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~ 162 (1173)
+++..+|++..+...+|..+...|++++|+..+++++..+|.++.++..+|.++...|++++|+..+++++..+|+++..
T Consensus 8 ~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 87 (135)
T TIGR02552 8 DLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRP 87 (135)
T ss_pred HHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHH
Confidence 33333333333333333333333333333333333333333333333333333333333333333333333333333333
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 045024 163 WEALGLAYHRLGMFSAAIKSYGRAIELDD 191 (1173)
Q Consensus 163 ~~~la~~~~~~g~~~~A~~~~~~al~~~p 191 (1173)
++.+|.++...|++++|+..|+++++.+|
T Consensus 88 ~~~la~~~~~~g~~~~A~~~~~~al~~~p 116 (135)
T TIGR02552 88 YFHAAECLLALGEPESALKALDLAIEICG 116 (135)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 33333333333333333333333333333
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=99.18 E-value=6.2e-10 Score=110.12 Aligned_cols=118 Identities=20% Similarity=0.310 Sum_probs=113.5
Q ss_pred HHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 045024 113 VVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDT 192 (1173)
Q Consensus 113 ~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 192 (1173)
+.+++++..+|++..+...+|..+...|++++|+..+++++..+|.++.++..+|.++...|++++|+..++++++.+|+
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~ 83 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD 83 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCHHH
Q 045024 193 SIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSA 230 (1173)
Q Consensus 193 ~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a 230 (1173)
++..++.+|.++...|++++|+..|+++++.+|++...
T Consensus 84 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 121 (135)
T TIGR02552 84 DPRPYFHAAECLLALGEPESALKALDLAIEICGENPEY 121 (135)
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchH
Confidence 99999999999999999999999999999999988754
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.7e-07 Score=123.60 Aligned_cols=382 Identities=12% Similarity=0.015 Sum_probs=240.1
Q ss_pred HHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHH-hhCCCCHHHHHHHHHH
Q 045024 23 SLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAV-SLSPDDSVSGEALCEL 101 (1173)
Q Consensus 23 ~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al-~~~p~~~~a~~~La~~ 101 (1173)
..+...+..+...|. +.+|+.++..+-.. +.-.......+..... .|+++.+..++..+- .....++......+.+
T Consensus 342 ~lh~raa~~~~~~g~-~~~Al~~a~~a~d~-~~~~~ll~~~a~~l~~-~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~ 418 (903)
T PRK04841 342 ELHRAAAEAWLAQGF-PSEAIHHALAAGDA-QLLRDILLQHGWSLFN-QGELSLLEECLNALPWEVLLENPRLVLLQAWL 418 (903)
T ss_pred HHHHHHHHHHHHCCC-HHHHHHHHHHCCCH-HHHHHHHHHhHHHHHh-cCChHHHHHHHHhCCHHHHhcCcchHHHHHHH
Confidence 445555666666666 88888766654211 1112345556777777 898888777765531 1112334455677888
Q ss_pred HHHCCCHHHHHHHHHHHHhhCCC---------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----HHHHHHHH
Q 045024 102 LEHGGKESLEVVVCREASDKSPR---------AFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTS-----PHLWEALG 167 (1173)
Q Consensus 102 ~~~~g~~~~A~~~~~~al~~~p~---------~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~-----~~~~~~la 167 (1173)
+...|++++|...+..+....+. .......++.++...|++++|...+++++...+.. ..+...+|
T Consensus 419 ~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg 498 (903)
T PRK04841 419 AQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLG 498 (903)
T ss_pred HHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHH
Confidence 89999999999999988654221 13445567888899999999999999999865532 23557789
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCC------hHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCHH-HHHHHHHHHHH
Q 045024 168 LAYHRLGMFSAAIKSYGRAIELDDTS------IFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVS-AHYGLASGLLG 240 (1173)
Q Consensus 168 ~~~~~~g~~~~A~~~~~~al~~~p~~------~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~-a~~~la~~~~~ 240 (1173)
.++...|++++|...+++++...... ..++..+|.++...|++++|...+++++........ .....+.++..
T Consensus 499 ~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 578 (903)
T PRK04841 499 EVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRI 578 (903)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHH
Confidence 99999999999999999998764321 345677899999999999999999999876332110 00011122334
Q ss_pred HHHHHHHhhcHHHHHHHHHHHHHHHHHHhhhcCChHHHHHHhchHHHHHhhccchhhhhhchhhhhhhhhhhhHhhHhhh
Q 045024 241 LAKQCINLGAFRWGASLLEDACKVAEANTRLAGNMSCIWKLHGDIQLTYAKCFPWAEERQSLEFDVETFSASIVSWKTTC 320 (1173)
Q Consensus 241 l~~~~~a~g~~~~A~~~l~~Al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 320 (1173)
++......|++++|...+.+++........ ......+...+.+.. .
T Consensus 579 la~~~~~~G~~~~A~~~~~~al~~~~~~~~--~~~~~~~~~la~~~~--------------------------------~ 624 (903)
T PRK04841 579 RAQLLWEWARLDEAEQCARKGLEVLSNYQP--QQQLQCLAMLAKISL--------------------------------A 624 (903)
T ss_pred HHHHHHHhcCHHHHHHHHHHhHHhhhccCc--hHHHHHHHHHHHHHH--------------------------------H
Confidence 566666778899999888888876553211 111122222222222 2
Q ss_pred hHHHHHHHHHHHHHHhcCCCCH---HHHHH----HHHHHHHHhhHHHhhhhhhhhhHHHHHHHHHHHhhcCCCHHHHHHH
Q 045024 321 LMAAISSKSSYQRALYLAPWQA---NIYTD----IAITSDLIYSLNEAYGHYQSAWHVSEKMALGALLLEGDNCQFWVTL 393 (1173)
Q Consensus 321 ~~~~~~A~~~~~~al~l~p~~~---~~~~~----la~~~~~~g~~~eA~~~~~~~~~~A~k~~~~al~~~p~~~~~~~~L 393 (1173)
.|+.++|...+.++..+.+... ..... ....+...|+.+.+
T Consensus 625 ~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A-------------------------------- 672 (903)
T PRK04841 625 RGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAA-------------------------------- 672 (903)
T ss_pred cCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHH--------------------------------
Confidence 3445677777777765433211 00000 01111222333332
Q ss_pred HHhhcccHHHHHHHHHHHhcCCC----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC------ChhHHHHhHHHHH
Q 045024 394 GCLSNYNGLKQHALIRGLQLDVS----LADAWAHIGKLYGEVGEKKLARQAFDSARSIDPS------LALPWAGMSADVQ 463 (1173)
Q Consensus 394 g~~~~~~~~a~~a~~kal~l~p~----~~~a~~~Lg~~y~~~g~~e~A~~~f~~al~~~P~------~~~a~~~l~a~~~ 463 (1173)
.+.+.......+. ....+..+|.++...|++++|...+++++..... ...+... .+.++
T Consensus 673 ----------~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~-la~a~ 741 (903)
T PRK04841 673 ----------ANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLIL-LNQLY 741 (903)
T ss_pred ----------HHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHH-HHHHH
Confidence 1111111111111 1123567899999999999999999999876322 1223444 57788
Q ss_pred HhcCCHHHHHHHHHHHHhcCC
Q 045024 464 ASESLVDDAFESCLRAVQILP 484 (1173)
Q Consensus 464 ~~~g~~~eA~~~~~~al~~~p 484 (1173)
...|+.++|...+.+++++..
T Consensus 742 ~~~G~~~~A~~~L~~Al~la~ 762 (903)
T PRK04841 742 WQQGRKSEAQRVLLEALKLAN 762 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHhC
Confidence 899999999999999998754
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.11 E-value=1e-08 Score=111.21 Aligned_cols=313 Identities=14% Similarity=0.067 Sum_probs=186.7
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHhhhcCChHHHH
Q 045024 200 SGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLASGLLGLAKQCINLGAFRWGASLLEDACKVAEANTRLAGNMSCIW 279 (1173)
Q Consensus 200 la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~l~~~~~a~g~~~~A~~~l~~Al~~~~~~~~~~~~~~~~~ 279 (1173)
-|.-+++.|++...+..|+.+++...++. ..+..+|.++|+.+..+++|++|+++..--+.+.+.+.
T Consensus 23 EGERLck~gdcraGv~ff~aA~qvGTeDl---~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lg---------- 89 (639)
T KOG1130|consen 23 EGERLCKMGDCRAGVDFFKAALQVGTEDL---STLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLG---------- 89 (639)
T ss_pred HHHHHHhccchhhhHHHHHHHHHhcchHH---HHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhc----------
Confidence 36678899999999999999999876554 35677889999998889998888776544333322111
Q ss_pred HHhchHHHHHhhccchhhhhhchhhhhhhhhhhhHhhHhhhhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHH
Q 045024 280 KLHGDIQLTYAKCFPWAEERQSLEFDVETFSASIVSWKTTCLMAAISSKSSYQRALYLAPWQANIYTDIAITSDLIYSLN 359 (1173)
Q Consensus 280 ~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~ 359 (1173)
+- -..+..--++|..+...|.|+
T Consensus 90 ----dk-----------------------------------------------------lGEAKssgNLGNtlKv~G~fd 112 (639)
T KOG1130|consen 90 ----DK-----------------------------------------------------LGEAKSSGNLGNTLKVKGAFD 112 (639)
T ss_pred ----ch-----------------------------------------------------hccccccccccchhhhhcccc
Confidence 10 001112234555555666666
Q ss_pred HhhhhhhhhhHHHHHHHHHHHhhcCCCHHHHHHHHHhhcccHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 045024 360 EAYGHYQSAWHVSEKMALGALLLEGDNCQFWVTLGCLSNYNGLKQHALIRGLQLDVSLADAWAHIGKLYGEVGEKKLARQ 439 (1173)
Q Consensus 360 eA~~~~~~~~~~A~k~~~~al~~~p~~~~~~~~Lg~~~~~~~~a~~a~~kal~l~p~~~~a~~~Lg~~y~~~g~~e~A~~ 439 (1173)
+|.....+.+..++++=.+..+ ..+++++|.+|...|....+ .-.-+....+.++ ...++.|.+
T Consensus 113 eA~~cc~rhLd~areLgDrv~e-----~RAlYNlgnvYhakGk~~g~-~~pee~g~f~~ev----------~~al~~Av~ 176 (639)
T KOG1130|consen 113 EALTCCFRHLDFARELGDRVLE-----SRALYNLGNVYHAKGKCTGL-EAPEEKGAFNAEV----------TSALENAVK 176 (639)
T ss_pred hHHHHHHHHhHHHHHHhHHHhh-----hHHHhhhhhhhhhcccccCC-CChhhcccccHHH----------HHHHHHHHH
Confidence 6655444434333332222221 23344444444322211000 0000000000110 012344555
Q ss_pred HHHHHHhhCCCChhHH-----HHhHHHHHHhcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 045024 440 AFDSARSIDPSLALPW-----AGMSADVQASESLVDDAFESCLRAVQILPLAEFQIGLAKLAKLSGHLSSSQVFGAIQQA 514 (1173)
Q Consensus 440 ~f~~al~~~P~~~~a~-----~~l~a~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~la~l~~~~g~~~~~~A~~~l~~a 514 (1173)
+|..-+++.....+.. ++.++..|.-.|+++.|+..-+.-+.+.. +.=.++
T Consensus 177 fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~------------------------efGDrA 232 (639)
T KOG1130|consen 177 FYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQ------------------------EFGDRA 232 (639)
T ss_pred HHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHH------------------------HhhhHH
Confidence 5555554432221111 12256677778888888876554443311 000111
Q ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 045024 515 IQRGPHYPESHNLYGLVCEARSDYQAAVVSYRLARYAISSSSGTVPNSHFQDISINLARSLSRAGNALDAVRECESLERQ 594 (1173)
Q Consensus 515 l~~~P~~~~a~~~lg~i~~~~g~~~~A~~~~~kAl~l~~~~pe~~~~~~~~~~~~~La~~~~~~g~~~eAi~~~~~~~~~ 594 (1173)
....++.++|.++.-.|+++.|+++|++.+.+.-...+ ...-++..+.||+.|.-..++++||.++.+-+.+
T Consensus 233 -----aeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~---r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaI 304 (639)
T KOG1130|consen 233 -----AERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGN---RTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAI 304 (639)
T ss_pred -----HHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcc---hhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 12457889999999999999999999999877554433 2334678899999999999999999999886544
Q ss_pred --CCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHhhhcc
Q 045024 595 --GMLD----AEVLQVYAFSLWQLGKYDLALSMARNLASSVS 630 (1173)
Q Consensus 595 --~p~~----~~~~~~la~a~~~~g~~~eA~~~~~~aL~~~p 630 (1173)
...| ..+...+|.+|-..|..++|+.+.+..+...-
T Consensus 305 AqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~s~ 346 (639)
T KOG1130|consen 305 AQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRSSL 346 (639)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 2333 34668899999999999999999998877543
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.11 E-value=2.2e-09 Score=124.87 Aligned_cols=208 Identities=17% Similarity=0.114 Sum_probs=183.5
Q ss_pred CCCHHHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 045024 19 PDDPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEAL 98 (1173)
Q Consensus 19 P~~~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~L 98 (1173)
|........++..+...|= ...|+..|++ +..|-....+|.. .|+..+|.....+-++ .|.++..|..+
T Consensus 395 pp~Wq~q~~laell~slGi-tksAl~I~Er--------lemw~~vi~CY~~-lg~~~kaeei~~q~le-k~~d~~lyc~L 463 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGI-TKSALVIFER--------LEMWDPVILCYLL-LGQHGKAEEINRQELE-KDPDPRLYCLL 463 (777)
T ss_pred CCcchHHHHHHHHHHHcch-HHHHHHHHHh--------HHHHHHHHHHHHH-hcccchHHHHHHHHhc-CCCcchhHHHh
Confidence 4445666788999998887 8999999998 5677788899999 9999999999999888 67778888888
Q ss_pred HHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Q 045024 99 CELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSA 178 (1173)
Q Consensus 99 a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~ 178 (1173)
|.+.....-|++|.++.+.. +..+...+|......++|+++...++..++++|-....|+.+|.+..+.+++..
T Consensus 464 GDv~~d~s~yEkawElsn~~------sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~ 537 (777)
T KOG1128|consen 464 GDVLHDPSLYEKAWELSNYI------SARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQA 537 (777)
T ss_pred hhhccChHHHHHHHHHhhhh------hHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHH
Confidence 88887777677777776654 345677788888889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHH
Q 045024 179 AIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLASGLLGLAK 243 (1173)
Q Consensus 179 A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~l~~ 243 (1173)
|.+.|.+++.++|++..+|.+++..|.+.|+-.+|...+.++++.+-++...|.+.-.+....|.
T Consensus 538 av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge 602 (777)
T KOG1128|consen 538 AVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGE 602 (777)
T ss_pred HHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhccc
Confidence 99999999999999999999999999999999999999999999998888888888777777776
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.10 E-value=2e-08 Score=112.91 Aligned_cols=157 Identities=18% Similarity=0.151 Sum_probs=141.7
Q ss_pred CCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHH
Q 045024 53 NPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRL 132 (1173)
Q Consensus 53 ~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l 132 (1173)
+|....++|..+..++. .|++++|+..++..+...|+|+..+...+.++...++..+|.+.+++++..+|+.+..+..+
T Consensus 302 ~~~~~aa~YG~A~~~~~-~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~ 380 (484)
T COG4783 302 KRGGLAAQYGRALQTYL-AGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNL 380 (484)
T ss_pred CccchHHHHHHHHHHHH-hcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHH
Confidence 37888899999999999 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH
Q 045024 133 GYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRK 212 (1173)
Q Consensus 133 a~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~ 212 (1173)
|..+++.|++.+|+..++..+..+|+++..|..++..|..+|+..+|... .+..|...|++++
T Consensus 381 a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A-----------------~AE~~~~~G~~~~ 443 (484)
T COG4783 381 AQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLA-----------------RAEGYALAGRLEQ 443 (484)
T ss_pred HHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHH-----------------HHHHHHhCCCHHH
Confidence 99999999999999999999999999999999999999999988776654 4556777899999
Q ss_pred HHHHHHHHHhhcCCC
Q 045024 213 GVEQFQLALKISSEN 227 (1173)
Q Consensus 213 A~~~~~~al~~~p~~ 227 (1173)
|+..+.++.+...-+
T Consensus 444 A~~~l~~A~~~~~~~ 458 (484)
T COG4783 444 AIIFLMRASQQVKLG 458 (484)
T ss_pred HHHHHHHHHHhccCC
Confidence 999999988876433
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.1e-09 Score=116.16 Aligned_cols=115 Identities=24% Similarity=0.350 Sum_probs=101.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 045024 127 WAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLM 206 (1173)
Q Consensus 127 ~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~ 206 (1173)
+-+..-|.-+++.++|.+|+..|.++|.++|+++..|.+.+.+|.++|.++.|++.++.++.++|....+|.++|.+|..
T Consensus 82 E~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~ 161 (304)
T KOG0553|consen 82 ESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLA 161 (304)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHc
Confidence 34556788888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCChHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHH
Q 045024 207 LGNFRKGVEQFQLALKISSENVSAHYGLASGLLGL 241 (1173)
Q Consensus 207 ~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~l 241 (1173)
+|++++|++.|+++++++|++......|..+-..+
T Consensus 162 ~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l 196 (304)
T KOG0553|consen 162 LGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKL 196 (304)
T ss_pred cCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHh
Confidence 99999999999999999999987665555444443
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.06 E-value=2.7e-09 Score=115.60 Aligned_cols=276 Identities=14% Similarity=0.107 Sum_probs=149.2
Q ss_pred HHHCCCHHHHHHHHHHHHhhCCCc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHH
Q 045024 102 LEHGGKESLEVVVCREASDKSPRA----FWAFRRLGYLQLHHKKWSEAVQSLQHAIRG------YPTSPHLWEALGLAYH 171 (1173)
Q Consensus 102 ~~~~g~~~~A~~~~~~al~~~p~~----~~a~~~la~~~~~~g~~~~A~~~l~~al~~------~p~~~~~~~~la~~~~ 171 (1173)
+.+.|+....+..|+.+++...++ ..+|..+|.+|+.+++|++|+++...-+.+ .-..+...-++|.++-
T Consensus 27 Lck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtlK 106 (639)
T KOG1130|consen 27 LCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTLK 106 (639)
T ss_pred HHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccchhh
Confidence 344444444444444444444333 223445555555556666665554332211 1122334456666666
Q ss_pred HcCCHHHHHHHHHHHHHhCCC------ChHHHHHHHHHHHHcCCh--------------------HHHHHHHHHHHhhcC
Q 045024 172 RLGMFSAAIKSYGRAIELDDT------SIFPLLESGNIFLMLGNF--------------------RKGVEQFQLALKISS 225 (1173)
Q Consensus 172 ~~g~~~~A~~~~~~al~~~p~------~~~a~~~la~~~~~~g~~--------------------~~A~~~~~~al~~~p 225 (1173)
-.|.|++|+.+..+-+..... ...+++++|.+|...|+. +.|.++|..-+++..
T Consensus 107 v~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~ 186 (639)
T KOG1130|consen 107 VKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSE 186 (639)
T ss_pred hhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 677777777666665543221 345667777777766543 233334443333322
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHhhhcCChHHHHHHhchHHHHHhhccchhhhhhchhhh
Q 045024 226 ENVSAHYGLASGLLGLAKQCINLGAFRWGASLLEDACKVAEANTRLAGNMSCIWKLHGDIQLTYAKCFPWAEERQSLEFD 305 (1173)
Q Consensus 226 ~~~~a~~~la~~~~~l~~~~~a~g~~~~A~~~l~~Al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~ 305 (1173)
... -....|.++-.+|+.++-+|+|+.|+...+.-+.+.+..
T Consensus 187 ~lg-Dr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~ef------------------------------------- 228 (639)
T KOG1130|consen 187 KLG-DRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEF------------------------------------- 228 (639)
T ss_pred Hhh-hHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHh-------------------------------------
Confidence 211 223445566666666666666666665444433322211
Q ss_pred hhhhhhhhHhhHhhhhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHhhhhhhhhhHHHHHHHHHHHhhcCC
Q 045024 306 VETFSASIVSWKTTCLMAAISSKSSYQRALYLAPWQANIYTDIAITSDLIYSLNEAYGHYQSAWHVSEKMALGALLLEGD 385 (1173)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~A~k~~~~al~~~p~ 385 (1173)
=.++- ...++.++|.++...|+++.|...+...+.+|+++=.+
T Consensus 229 -------------------------GDrAa-----eRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r------- 271 (639)
T KOG1130|consen 229 -------------------------GDRAA-----ERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNR------- 271 (639)
T ss_pred -------------------------hhHHH-----HHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcch-------
Confidence 01111 12356678888888888888866554433333221111
Q ss_pred CHHHHHHHHHhhcccHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC------ChhHHHHhH
Q 045024 386 NCQFWVTLGCLSNYNGLKQHALIRGLQLDVSLADAWAHIGKLYGEVGEKKLARQAFDSARSIDPS------LALPWAGMS 459 (1173)
Q Consensus 386 ~~~~~~~Lg~~~~~~~~a~~a~~kal~l~p~~~~a~~~Lg~~y~~~g~~e~A~~~f~~al~~~P~------~~~a~~~l~ 459 (1173)
.-.+..-+.||..|.-..++++|+.++.+-+.+..+ ...+... +
T Consensus 272 -----------------------------~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwS-L 321 (639)
T KOG1130|consen 272 -----------------------------TVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWS-L 321 (639)
T ss_pred -----------------------------hHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH-H
Confidence 113445678999999999999999999887766321 2334444 5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhc
Q 045024 460 ADVQASESLVDDAFESCLRAVQI 482 (1173)
Q Consensus 460 a~~~~~~g~~~eA~~~~~~al~~ 482 (1173)
+.++...|..++|+.+.+..+++
T Consensus 322 gna~~alg~h~kAl~fae~hl~~ 344 (639)
T KOG1130|consen 322 GNAFNALGEHRKALYFAELHLRS 344 (639)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHH
Confidence 66777788888887766655544
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.04 E-value=6e-09 Score=121.38 Aligned_cols=194 Identities=15% Similarity=0.129 Sum_probs=172.7
Q ss_pred HHHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 045024 22 PSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCEL 101 (1173)
Q Consensus 22 ~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~~ 101 (1173)
...|-....+|...|+ ..+|.....+-++ .|.++..|..+|.+... ..-|++|.++++.. +..+...+|..
T Consensus 424 lemw~~vi~CY~~lg~-~~kaeei~~q~le-k~~d~~lyc~LGDv~~d-~s~yEkawElsn~~------sarA~r~~~~~ 494 (777)
T KOG1128|consen 424 LEMWDPVILCYLLLGQ-HGKAEEINRQELE-KDPDPRLYCLLGDVLHD-PSLYEKAWELSNYI------SARAQRSLALL 494 (777)
T ss_pred HHHHHHHHHHHHHhcc-cchHHHHHHHHhc-CCCcchhHHHhhhhccC-hHHHHHHHHHhhhh------hHHHHHhhccc
Confidence 4567778888888886 6888888888887 77788999999988877 65566666655542 34567788888
Q ss_pred HHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 045024 102 LEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIK 181 (1173)
Q Consensus 102 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 181 (1173)
....+++.++...++..++++|-....|+.+|.+..+.++++.|...|...+.++|++..+|.+++..|++.|+-.+|..
T Consensus 495 ~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~ 574 (777)
T KOG1128|consen 495 ILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFR 574 (777)
T ss_pred cccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHH
Confidence 88899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhc
Q 045024 182 SYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKIS 224 (1173)
Q Consensus 182 ~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~ 224 (1173)
.+.++++-+-++...|.+...+....|.+++|++.|.+.+.+.
T Consensus 575 ~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~ 617 (777)
T KOG1128|consen 575 KLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLR 617 (777)
T ss_pred HHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhh
Confidence 9999999998899999999999999999999999999998764
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.01 E-value=3.8e-09 Score=112.02 Aligned_cols=117 Identities=21% Similarity=0.161 Sum_probs=92.5
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 045024 95 GEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLG 174 (1173)
Q Consensus 95 ~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g 174 (1173)
+-.-|.-+++.++|.+|+..|.++++++|+++..|.+.+.+|.++|.++.|++..+.++.++|....+|..||.+|..+|
T Consensus 84 LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~g 163 (304)
T KOG0553|consen 84 LKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALG 163 (304)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccC
Confidence 55667777777888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChH
Q 045024 175 MFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFR 211 (1173)
Q Consensus 175 ~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~ 211 (1173)
++++|++.|+++++++|++......|..+-.++++..
T Consensus 164 k~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 164 KYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred cHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence 8888888888888888888777777777766666665
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.4e-08 Score=99.41 Aligned_cols=106 Identities=17% Similarity=0.222 Sum_probs=84.4
Q ss_pred hhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHH
Q 045024 120 DKS-PRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLL 198 (1173)
Q Consensus 120 ~~~-p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~ 198 (1173)
.+. ++.-+..+.+|..++..|++++|...|+-+...+|.+...|++||.++..+|++++|+..|.+++.++|+++.+++
T Consensus 28 ~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~ 107 (157)
T PRK15363 28 DDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPW 107 (157)
T ss_pred CCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHH
Confidence 445 5566677778888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhhcC
Q 045024 199 ESGNIFLMLGNFRKGVEQFQLALKISS 225 (1173)
Q Consensus 199 ~la~~~~~~g~~~~A~~~~~~al~~~p 225 (1173)
+.|.++...|+.+.|.+.|+.++....
T Consensus 108 ~ag~c~L~lG~~~~A~~aF~~Ai~~~~ 134 (157)
T PRK15363 108 AAAECYLACDNVCYAIKALKAVVRICG 134 (157)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHhc
Confidence 888888888888888888888877653
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.99 E-value=7.8e-08 Score=108.27 Aligned_cols=139 Identities=17% Similarity=0.087 Sum_probs=122.4
Q ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 045024 88 SPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALG 167 (1173)
Q Consensus 88 ~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la 167 (1173)
+|....+++..+..++..|++++|+..++..+...|+|+..+...+.++...|+..+|.+.+++++..+|+.+....++|
T Consensus 302 ~~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a 381 (484)
T COG4783 302 KRGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLA 381 (484)
T ss_pred CccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHH
Confidence 36777888999999999999999999999999999999999999999999999999999999999999999888999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCC
Q 045024 168 LAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSE 226 (1173)
Q Consensus 168 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 226 (1173)
.+|.+.|++.+|+..++..+..+|+++..|..++..|..+|+..+|...+-+.......
T Consensus 382 ~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~~G~ 440 (484)
T COG4783 382 QALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYALAGR 440 (484)
T ss_pred HHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999998888777666555433
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.1e-08 Score=100.04 Aligned_cols=102 Identities=16% Similarity=0.035 Sum_probs=67.3
Q ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 045024 89 PDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGL 168 (1173)
Q Consensus 89 p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~ 168 (1173)
++..+..+.+|..+...|++++|...|+.+...+|.++..|+.+|.++..+|++++|+..|.+++.++|+++.++.++|.
T Consensus 32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~ 111 (157)
T PRK15363 32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAE 111 (157)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHH
Confidence 44555566666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHcCCHHHHHHHHHHHHHhC
Q 045024 169 AYHRLGMFSAAIKSYGRAIELD 190 (1173)
Q Consensus 169 ~~~~~g~~~~A~~~~~~al~~~ 190 (1173)
+++..|+.+.|++.|+.++...
T Consensus 112 c~L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 112 CYLACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred HHHHcCCHHHHHHHHHHHHHHh
Confidence 6666666666666666666654
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=98.89 E-value=2.5e-07 Score=100.57 Aligned_cols=164 Identities=12% Similarity=0.060 Sum_probs=103.3
Q ss_pred CHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHH---HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc---HHHH
Q 045024 56 NAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVS---GEALCELLEHGGKESLEVVVCREASDKSPRA---FWAF 129 (1173)
Q Consensus 56 ~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a---~~~La~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~ 129 (1173)
.+..++..|..+.. .|++++|+..|++++...|..+.+ .+.+|.++.+.+++++|+..+++.++..|++ +.++
T Consensus 31 ~~~~~Y~~A~~~~~-~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~ 109 (243)
T PRK10866 31 PPSEIYATAQQKLQ-DGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVL 109 (243)
T ss_pred CHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHH
Confidence 34455555555555 566666666666666655555443 2555555666666666666666666555543 3445
Q ss_pred HHHHHHHHHcC---------------C---HHHHHHHHHHHHHhCCCCH-----------------HHHHHHHHHHHHcC
Q 045024 130 RRLGYLQLHHK---------------K---WSEAVQSLQHAIRGYPTSP-----------------HLWEALGLAYHRLG 174 (1173)
Q Consensus 130 ~~la~~~~~~g---------------~---~~~A~~~l~~al~~~p~~~-----------------~~~~~la~~~~~~g 174 (1173)
+.+|.++...+ | ..+|+..|++.++..|+.. .--+..|..|.+.|
T Consensus 110 Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~ 189 (243)
T PRK10866 110 YMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRG 189 (243)
T ss_pred HHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 55555433222 1 2345566666666666542 12345678888899
Q ss_pred CHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHcCChHHHHHHHHHH
Q 045024 175 MFSAAIKSYGRAIELDDTS---IFPLLESGNIFLMLGNFRKGVEQFQLA 220 (1173)
Q Consensus 175 ~~~~A~~~~~~al~~~p~~---~~a~~~la~~~~~~g~~~~A~~~~~~a 220 (1173)
.+..|+.-++.+++..|+. .+++..++..|..+|..++|.......
T Consensus 190 ~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 190 AYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred chHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 9999999999999888774 578888888999999998887766543
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.88 E-value=0.0001 Score=87.02 Aligned_cols=183 Identities=14% Similarity=0.131 Sum_probs=114.7
Q ss_pred HHHHHHHHHHHHccCcHHHHH------------HHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCC
Q 045024 23 SLHLDLGLHLWENSESKEKAA------------EHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPD 90 (1173)
Q Consensus 23 ~~~~~lg~~~~~~~~~~~~A~------------~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~ 90 (1173)
.+|-+++.......+ .+-|. ..++++.+ +|+..+ ...+....+ .|..++|...|++.-+
T Consensus 758 ~vW~nmA~McVkT~R-LDVAkVClGhm~~aRgaRAlR~a~q-~~~e~e--akvAvLAie-LgMlEeA~~lYr~ckR---- 828 (1416)
T KOG3617|consen 758 SVWDNMASMCVKTRR-LDVAKVCLGHMKNARGARALRRAQQ-NGEEDE--AKVAVLAIE-LGMLEEALILYRQCKR---- 828 (1416)
T ss_pred HHHHHHHHHhhhhcc-ccHHHHhhhhhhhhhhHHHHHHHHh-CCcchh--hHHHHHHHH-HhhHHHHHHHHHHHHH----
Confidence 456666655554443 43333 33444433 343322 244556667 8888888888888644
Q ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH----------HHhCC---
Q 045024 91 DSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHA----------IRGYP--- 157 (1173)
Q Consensus 91 ~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~a----------l~~~p--- 157 (1173)
+-.|-.+|...|.+++|.++.+.--++.- ...+++.+..+...+|.+.|+++|+++ +.-+|
T Consensus 829 ----~DLlNKlyQs~g~w~eA~eiAE~~DRiHL--r~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~ 902 (1416)
T KOG3617|consen 829 ----YDLLNKLYQSQGMWSEAFEIAETKDRIHL--RNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQI 902 (1416)
T ss_pred ----HHHHHHHHHhcccHHHHHHHHhhccceeh--hhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHH
Confidence 33556677788888888877654322221 345677777788888888888888764 23333
Q ss_pred -------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---------------------CCCChHHHHHHHHHHHHcCC
Q 045024 158 -------TSPHLWEALGLAYHRLGMFSAAIKSYGRAIEL---------------------DDTSIFPLLESGNIFLMLGN 209 (1173)
Q Consensus 158 -------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---------------------~p~~~~a~~~la~~~~~~g~ 209 (1173)
.++..|..-|..+...|+.+.|+..|..+-.. ...+..+.+.+|+.|...|+
T Consensus 903 e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~ 982 (1416)
T KOG3617|consen 903 EQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGD 982 (1416)
T ss_pred HHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHH
Confidence 34556667788888888888888888876432 12344556666777777777
Q ss_pred hHHHHHHHHHH
Q 045024 210 FRKGVEQFQLA 220 (1173)
Q Consensus 210 ~~~A~~~~~~a 220 (1173)
+.+|+..|.++
T Consensus 983 v~~Av~FfTrA 993 (1416)
T KOG3617|consen 983 VVKAVKFFTRA 993 (1416)
T ss_pred HHHHHHHHHHH
Confidence 77776666554
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=98.86 E-value=4.2e-08 Score=113.25 Aligned_cols=113 Identities=17% Similarity=0.205 Sum_probs=88.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcC
Q 045024 129 FRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLG 208 (1173)
Q Consensus 129 ~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g 208 (1173)
+...|...+..|+|++|+..|+++++.+|+++.++..+|.++...|++++|+..++++++++|++..+++.+|.++..+|
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence 34557777778888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred ChHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHH
Q 045024 209 NFRKGVEQFQLALKISSENVSAHYGLASGLLGL 241 (1173)
Q Consensus 209 ~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~l 241 (1173)
++++|+..|+++++++|++..+...++.+...+
T Consensus 85 ~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 85 EYQTAKAALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 888888888888888888877766665554443
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.8e-08 Score=112.18 Aligned_cols=253 Identities=14% Similarity=0.083 Sum_probs=154.6
Q ss_pred cCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 045024 71 SIDTQRAIKCYQRAVSLSPD-DSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSL 149 (1173)
Q Consensus 71 ~g~~~eA~~~~~~al~~~p~-~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l 149 (1173)
.|+|..++..++ ....+|. .......+.+.+..+|+++..+..... ..+....+...++..+...++.+.++..+
T Consensus 14 ~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~---~~~~~l~av~~la~y~~~~~~~e~~l~~l 89 (290)
T PF04733_consen 14 LGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLSEIKK---SSSPELQAVRLLAEYLSSPSDKESALEEL 89 (290)
T ss_dssp TT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHHHS-T---TSSCCCHHHHHHHHHHCTSTTHHCHHHHH
T ss_pred hhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHHHhcc---CCChhHHHHHHHHHHHhCccchHHHHHHH
Confidence 688887776665 2222322 233466777778888887766554432 11222344455555554445666666666
Q ss_pred HHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCC
Q 045024 150 QHAIRGYP--TSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSEN 227 (1173)
Q Consensus 150 ~~al~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 227 (1173)
+..+.... .++......|.++...|++++|++.+.+. ++.+.......++..+++++.|.+.++.+.+.+.+.
T Consensus 90 ~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~-----~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~ 164 (290)
T PF04733_consen 90 KELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG-----GSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDS 164 (290)
T ss_dssp HHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT-----TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCH
T ss_pred HHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc-----CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcH
Confidence 65543322 34555666778888889999888887654 567777788889999999999999998887776654
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHhhhcCChHHHHHHhchHHHHHhhccchhhhhhchhhhhh
Q 045024 228 VSAHYGLASGLLGLAKQCINLGAFRWGASLLEDACKVAEANTRLAGNMSCIWKLHGDIQLTYAKCFPWAEERQSLEFDVE 307 (1173)
Q Consensus 228 ~~a~~~la~~~~~l~~~~~a~g~~~~A~~~l~~Al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~ 307 (1173)
... .++..++.+.. |
T Consensus 165 ~l~--qLa~awv~l~~-----g---------------------------------------------------------- 179 (290)
T PF04733_consen 165 ILT--QLAEAWVNLAT-----G---------------------------------------------------------- 179 (290)
T ss_dssp HHH--HHHHHHHHHHH-----T----------------------------------------------------------
T ss_pred HHH--HHHHHHHHHHh-----C----------------------------------------------------------
Confidence 433 33333332211 0
Q ss_pred hhhhhhHhhHhhhhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHhhhhhhhhhHHHHHHHHHHHhhcCCCH
Q 045024 308 TFSASIVSWKTTCLMAAISSKSSYQRALYLAPWQANIYTDIAITSDLIYSLNEAYGHYQSAWHVSEKMALGALLLEGDNC 387 (1173)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~A~k~~~~al~~~p~~~ 387 (1173)
...+.+|.-.|++..+..|.++.+++.++.++..+|++++|
T Consensus 180 -------------~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eA-------------------------- 220 (290)
T PF04733_consen 180 -------------GEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEA-------------------------- 220 (290)
T ss_dssp -------------TTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHH--------------------------
T ss_pred -------------chhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHH--------------------------
Confidence 00123466667776666666777777788887777777777
Q ss_pred HHHHHHHHhhcccHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCH-HHHHHHHHHHHhhCCCCh
Q 045024 388 QFWVTLGCLSNYNGLKQHALIRGLQLDVSLADAWAHIGKLYGEVGEK-KLARQAFDSARSIDPSLA 452 (1173)
Q Consensus 388 ~~~~~Lg~~~~~~~~a~~a~~kal~l~p~~~~a~~~Lg~~y~~~g~~-e~A~~~f~~al~~~P~~~ 452 (1173)
++.+.+++..+|++++++.+++.+....|+. +.+.+++.+....+|+++
T Consensus 221 ----------------e~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~ 270 (290)
T PF04733_consen 221 ----------------EELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHP 270 (290)
T ss_dssp ----------------HHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSH
T ss_pred ----------------HHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCCh
Confidence 2345556666777777777777777777777 556667777777777763
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=98.84 E-value=2.4e-07 Score=98.32 Aligned_cols=168 Identities=18% Similarity=0.160 Sum_probs=94.7
Q ss_pred CHHHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHH---H
Q 045024 21 DPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQN---AVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSV---S 94 (1173)
Q Consensus 21 ~~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~---~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~---a 94 (1173)
++..++..|..++..|+ |.+|+..|++++...|.. +.+.+.+|.++.. .|++++|+..|++.++..|+++. +
T Consensus 4 ~~~~lY~~a~~~~~~g~-y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~-~~~y~~A~~~~~~fi~~yP~~~~~~~A 81 (203)
T PF13525_consen 4 TAEALYQKALEALQQGD-YEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYK-QGDYEEAIAAYERFIKLYPNSPKADYA 81 (203)
T ss_dssp -HHHHHHHHHHHHHCT--HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHH-TT-TTHHHH
T ss_pred CHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHCCCCcchhhH
Confidence 35566777777777766 777777777777666654 4566777777777 77777777777777777766543 4
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH--------------
Q 045024 95 GEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSP-------------- 160 (1173)
Q Consensus 95 ~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~-------------- 160 (1173)
++.+|.++.....-. + ......+...+|+..|+..++..|++.
T Consensus 82 ~Y~~g~~~~~~~~~~---------~--------------~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~ 138 (203)
T PF13525_consen 82 LYMLGLSYYKQIPGI---------L--------------RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRN 138 (203)
T ss_dssp HHHHHHHHHHHHHHH---------H---------------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCccc---------h--------------hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHH
Confidence 555555554431110 0 001111222344444444444444431
Q ss_pred ---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHcCChHHH
Q 045024 161 ---HLWEALGLAYHRLGMFSAAIKSYGRAIELDDTS---IFPLLESGNIFLMLGNFRKG 213 (1173)
Q Consensus 161 ---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~la~~~~~~g~~~~A 213 (1173)
.--+.+|..|.+.|.+..|+..++.+++..|+. ..++..++..|..+|..+.|
T Consensus 139 ~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 139 RLAEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp HHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 223446777777777777777777777777765 35666777777777777643
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=98.84 E-value=4.5e-07 Score=98.59 Aligned_cols=164 Identities=13% Similarity=0.049 Sum_probs=138.9
Q ss_pred CHHHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHH---H
Q 045024 21 DPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVA---FRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSV---S 94 (1173)
Q Consensus 21 ~~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~~a---~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~---a 94 (1173)
++..++..|..++..|+ |++|+..|++++...|..+.+ .+.+|.++.+ .+++++|+..|++.++.+|+++. +
T Consensus 31 ~~~~~Y~~A~~~~~~g~-y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~-~~~y~~A~~~~e~fi~~~P~~~~~~~a 108 (243)
T PRK10866 31 PPSEIYATAQQKLQDGN-WKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYK-NADLPLAQAAIDRFIRLNPTHPNIDYV 108 (243)
T ss_pred CHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHhCcCCCchHHH
Confidence 67788999999999887 999999999999999998655 4899999999 99999999999999999998764 4
Q ss_pred HHHHHHHHHHCC---------------C---HHHHHHHHHHHHhhCCCcHH-----------------HHHHHHHHHHHc
Q 045024 95 GEALCELLEHGG---------------K---ESLEVVVCREASDKSPRAFW-----------------AFRRLGYLQLHH 139 (1173)
Q Consensus 95 ~~~La~~~~~~g---------------~---~~~A~~~~~~al~~~p~~~~-----------------a~~~la~~~~~~ 139 (1173)
++.+|.++...+ | ..+|+..|++.++..|+... --+.+|..|.+.
T Consensus 109 ~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~ 188 (243)
T PRK10866 109 LYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKR 188 (243)
T ss_pred HHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 788887654433 1 35788999999999997621 223568889999
Q ss_pred CCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 045024 140 KKWSEAVQSLQHAIRGYPTS---PHLWEALGLAYHRLGMFSAAIKSYGRA 186 (1173)
Q Consensus 140 g~~~~A~~~l~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~a 186 (1173)
|.|..|+.-++.+++..|+. .+++..++..|...|..++|.+.....
T Consensus 189 ~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 189 GAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred CchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 99999999999999998864 678899999999999999998876553
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=98.84 E-value=5.3e-08 Score=112.46 Aligned_cols=103 Identities=16% Similarity=0.132 Sum_probs=45.9
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHH
Q 045024 64 GHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWS 143 (1173)
Q Consensus 64 g~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~ 143 (1173)
|..++. .|++++|+..|+++++.+|++..++..+|.++...|++++|+..+++++.++|+++.+++.+|.++...|+++
T Consensus 9 a~~a~~-~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~ 87 (356)
T PLN03088 9 AKEAFV-DDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQ 87 (356)
T ss_pred HHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHH
Confidence 344444 4444444444444444444444444444444444444444444444444444444444444444444444444
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHH
Q 045024 144 EAVQSLQHAIRGYPTSPHLWEALG 167 (1173)
Q Consensus 144 ~A~~~l~~al~~~p~~~~~~~~la 167 (1173)
+|+..|++++.++|+++.+...++
T Consensus 88 eA~~~~~~al~l~P~~~~~~~~l~ 111 (356)
T PLN03088 88 TAKAALEKGASLAPGDSRFTKLIK 111 (356)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHH
Confidence 444444444444444444443333
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.81 E-value=0.00079 Score=81.39 Aligned_cols=221 Identities=13% Similarity=0.099 Sum_probs=167.6
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHH
Q 045024 4 KGALLLQLEDSLEANPDDPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQR 83 (1173)
Q Consensus 4 ~~aAi~~l~~al~~~P~~~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~ 83 (1173)
+.+|+....+.++..|+...+....|.++.+.|. .++|..+++..-...+++...+..+-.+|.. +|++++|..+|++
T Consensus 25 fkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk-~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d-~~~~d~~~~~Ye~ 102 (932)
T KOG2053|consen 25 FKKALAKLGKLLKKHPNALYAKVLKALSLFRLGK-GDEALKLLEALYGLKGTDDLTLQFLQNVYRD-LGKLDEAVHLYER 102 (932)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcC-chhHHHHHhhhccCCCCchHHHHHHHHHHHH-HhhhhHHHHHHHH
Confidence 4457999999999999999999999999999998 9999988888777888888899999999999 9999999999999
Q ss_pred HHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH-cCC---------HHHHHHHHHHHH
Q 045024 84 AVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLH-HKK---------WSEAVQSLQHAI 153 (1173)
Q Consensus 84 al~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~-~g~---------~~~A~~~l~~al 153 (1173)
++..+|+ .+..+.+-..|.+-++|.+=.+.--+..+..|+++..+.....+.++ ... ..-|....++.+
T Consensus 103 ~~~~~P~-eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l 181 (932)
T KOG2053|consen 103 ANQKYPS-EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLL 181 (932)
T ss_pred HHhhCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHh
Confidence 9999999 77777888888888887776666666666778876554444444433 222 233555566666
Q ss_pred HhC-CCCHH-HHHHHHHHHHHcCCHHHHHHHHHH-HHHh-CCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCC
Q 045024 154 RGY-PTSPH-LWEALGLAYHRLGMFSAAIKSYGR-AIEL-DDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSEN 227 (1173)
Q Consensus 154 ~~~-p~~~~-~~~~la~~~~~~g~~~~A~~~~~~-al~~-~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 227 (1173)
+.. +-... -....-.++..+|++++|...+.. ..+. .+.+...-......+...+++.+-.+...+++..++++
T Consensus 182 ~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~Dd 259 (932)
T KOG2053|consen 182 EKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGNDD 259 (932)
T ss_pred ccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCCcc
Confidence 655 32211 122233566778999999999843 3333 34445555567788888999999999999999999887
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.2e-07 Score=101.77 Aligned_cols=120 Identities=15% Similarity=0.097 Sum_probs=75.7
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcC---CHHHHHHHHH
Q 045024 74 TQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHK---KWSEAVQSLQ 150 (1173)
Q Consensus 74 ~~eA~~~~~~al~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g---~~~~A~~~l~ 150 (1173)
.++-+.-++.-+..+|+|.+.|..||.+|..+|++..|...|.+++++.|++++.+..+|.+++.+. ...++...|+
T Consensus 138 ~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~ 217 (287)
T COG4235 138 MEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLR 217 (287)
T ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence 3444445555556666666666666666666666666666666666666666666666666655432 3456666666
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 045024 151 HAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTS 193 (1173)
Q Consensus 151 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 193 (1173)
+++..+|++..+.+.+|..++..|+|.+|+..++..++..|.+
T Consensus 218 ~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~ 260 (287)
T COG4235 218 QALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPAD 260 (287)
T ss_pred HHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCC
Confidence 6666666666666666666666666666666666666665554
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=98.77 E-value=5.1e-07 Score=95.84 Aligned_cols=157 Identities=22% Similarity=0.315 Sum_probs=112.4
Q ss_pred HHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHccCC-----
Q 045024 5 GALLLQLEDSLEANPDD---PSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNA---VAFRYLGHYYTRFSID----- 73 (1173)
Q Consensus 5 ~aAi~~l~~al~~~P~~---~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~---~a~~~lg~~~~~~~g~----- 73 (1173)
..|+..|++++...|.+ +.+.+.+|.+++..++ +++|+..|++.++..|+++ .+++.+|.++.. ...
T Consensus 22 ~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~-y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~-~~~~~~~~ 99 (203)
T PF13525_consen 22 EEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGD-YEEAIAAYERFIKLYPNSPKADYALYMLGLSYYK-QIPGILRS 99 (203)
T ss_dssp HHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHH-HHHHHH-T
T ss_pred HHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHH-hCccchhc
Confidence 44699999999998875 6789999999999987 9999999999999999864 689999999888 532
Q ss_pred ------HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 045024 74 ------TQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQ 147 (1173)
Q Consensus 74 ------~~eA~~~~~~al~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~ 147 (1173)
..+|+..|+..++..|++..+- +|...+..+-. .-..--+.+|..|.+.|.|..|+.
T Consensus 100 ~~D~~~~~~A~~~~~~li~~yP~S~y~~--------------~A~~~l~~l~~---~la~~e~~ia~~Y~~~~~y~aA~~ 162 (203)
T PF13525_consen 100 DRDQTSTRKAIEEFEELIKRYPNSEYAE--------------EAKKRLAELRN---RLAEHELYIARFYYKRGKYKAAII 162 (203)
T ss_dssp T---HHHHHHHHHHHHHHHH-TTSTTHH--------------HHHHHHHHHHH---HHHHHHHHHHHHHHCTT-HHHHHH
T ss_pred ccChHHHHHHHHHHHHHHHHCcCchHHH--------------HHHHHHHHHHH---HHHHHHHHHHHHHHHcccHHHHHH
Confidence 2478888888888888876542 11111111100 012233457888888888888888
Q ss_pred HHHHHHHhCCCCH---HHHHHHHHHHHHcCCHHHHH
Q 045024 148 SLQHAIRGYPTSP---HLWEALGLAYHRLGMFSAAI 180 (1173)
Q Consensus 148 ~l~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~ 180 (1173)
.++.+++..|+.. +++..++..|.++|..+.|.
T Consensus 163 r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 163 RFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 8888888888763 56778888888888887544
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.76 E-value=7.1e-08 Score=107.39 Aligned_cols=166 Identities=13% Similarity=0.101 Sum_probs=111.1
Q ss_pred HHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q 045024 57 AVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQ 136 (1173)
Q Consensus 57 ~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~ 136 (1173)
+......|.++.. .|++++|++.+.+. .+.+.......++...++++.|.+.++.+.+.+.+........+.+.
T Consensus 102 ~~~~~~~A~i~~~-~~~~~~AL~~l~~~-----~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~ 175 (290)
T PF04733_consen 102 EIVQLLAATILFH-EGDYEEALKLLHKG-----GSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVN 175 (290)
T ss_dssp HHHHHHHHHHHCC-CCHHHHHHCCCTTT-----TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-cCCHHHHHHHHHcc-----CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHH
Confidence 3444555666666 77777777766543 45666666677777777777777777777777666665555555565
Q ss_pred HHcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCh-HHH
Q 045024 137 LHHK--KWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNF-RKG 213 (1173)
Q Consensus 137 ~~~g--~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~-~~A 213 (1173)
+..| .+.+|...|++.....+.++..+..++.+++.+|++++|.+.++++++.+|+++.++.+++.+....|+. +.+
T Consensus 176 l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~ 255 (290)
T PF04733_consen 176 LATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAA 255 (290)
T ss_dssp HHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHH
T ss_pred HHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHH
Confidence 5555 4777777777776666667777777777777777777777777777777777777777777777777777 445
Q ss_pred HHHHHHHHhhcCCCH
Q 045024 214 VEQFQLALKISSENV 228 (1173)
Q Consensus 214 ~~~~~~al~~~p~~~ 228 (1173)
.+++.++...+|+++
T Consensus 256 ~~~l~qL~~~~p~h~ 270 (290)
T PF04733_consen 256 ERYLSQLKQSNPNHP 270 (290)
T ss_dssp HHHHHHCHHHTTTSH
T ss_pred HHHHHHHHHhCCCCh
Confidence 556666666777766
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.76 E-value=2.4e-07 Score=99.43 Aligned_cols=123 Identities=16% Similarity=0.149 Sum_probs=113.7
Q ss_pred HHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC---CHHHHHHHHH
Q 045024 108 ESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLG---MFSAAIKSYG 184 (1173)
Q Consensus 108 ~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g---~~~~A~~~~~ 184 (1173)
.+.-+.-++.-+..+|+|+..|..||.+|+.+|+++.|...|.+++++.|++++.+..+|.+++.+. ...++...++
T Consensus 138 ~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~ 217 (287)
T COG4235 138 MEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLR 217 (287)
T ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence 5666777888899999999999999999999999999999999999999999999999999988753 4678999999
Q ss_pred HHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCHHH
Q 045024 185 RAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSA 230 (1173)
Q Consensus 185 ~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a 230 (1173)
+++..+|.++.+.+.+|..++..|+|.+|+..++.+++..|.+..-
T Consensus 218 ~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~r 263 (287)
T COG4235 218 QALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPR 263 (287)
T ss_pred HHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCch
Confidence 9999999999999999999999999999999999999998876543
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.76 E-value=9.1e-05 Score=87.34 Aligned_cols=333 Identities=13% Similarity=0.039 Sum_probs=173.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChH
Q 045024 132 LGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFR 211 (1173)
Q Consensus 132 la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~ 211 (1173)
.+.+...+|-.++|...|++.-+ +-.+-..|...|.+++|.+.-+.--.+ .-...+++.|.-+...++.+
T Consensus 806 vAvLAieLgMlEeA~~lYr~ckR--------~DLlNKlyQs~g~w~eA~eiAE~~DRi--HLr~Tyy~yA~~Lear~Di~ 875 (1416)
T KOG3617|consen 806 VAVLAIELGMLEEALILYRQCKR--------YDLLNKLYQSQGMWSEAFEIAETKDRI--HLRNTYYNYAKYLEARRDIE 875 (1416)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHH--------HHHHHHHHHhcccHHHHHHHHhhccce--ehhhhHHHHHHHHHhhccHH
Confidence 34444555556666666655432 122334455555555555544321111 11234555555555566666
Q ss_pred HHHHHHHHH----------HhhcCCCHHHHHHH---HHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHhhhcCChHHH
Q 045024 212 KGVEQFQLA----------LKISSENVSAHYGL---ASGLLGLAKQCINLGAFRWGASLLEDACKVAEANTRLAGNMSCI 278 (1173)
Q Consensus 212 ~A~~~~~~a----------l~~~p~~~~a~~~l---a~~~~~l~~~~~a~g~~~~A~~~l~~Al~~~~~~~~~~~~~~~~ 278 (1173)
.|+++|+++ +..+|.....+... -..+.-.|.+.+..|+.+.|+.+|..|...+.... +
T Consensus 876 ~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~Vr--------I 947 (1416)
T KOG3617|consen 876 AALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVR--------I 947 (1416)
T ss_pred HHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhhee--------e
Confidence 666666543 11122211111110 12345566777778888888888888877654221 0
Q ss_pred HHHhchHHHHHhhccchhhhhhchhhhhhhhhhhhHhhHhhhhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhH
Q 045024 279 WKLHGDIQLTYAKCFPWAEERQSLEFDVETFSASIVSWKTTCLMAAISSKSSYQRALYLAPWQANIYTDIAITSDLIYSL 358 (1173)
Q Consensus 279 ~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~ 358 (1173)
.-.. |+.++|-.. .....+..+.+.++..|...|++
T Consensus 948 ~C~q---------------------------------------Gk~~kAa~i-----A~esgd~AAcYhlaR~YEn~g~v 983 (1416)
T KOG3617|consen 948 KCIQ---------------------------------------GKTDKAARI-----AEESGDKAACYHLARMYENDGDV 983 (1416)
T ss_pred Eeec---------------------------------------cCchHHHHH-----HHhcccHHHHHHHHHHhhhhHHH
Confidence 0011 112223222 22345677889999999999999
Q ss_pred HHhhhhhhhhhHHHHHHHHHHHhhcCCC--HHHHHHHHHhhcccH--HHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCH
Q 045024 359 NEAYGHYQSAWHVSEKMALGALLLEGDN--CQFWVTLGCLSNYNG--LKQHALIRGLQLDVSLADAWAHIGKLYGEVGEK 434 (1173)
Q Consensus 359 ~eA~~~~~~~~~~A~k~~~~al~~~p~~--~~~~~~Lg~~~~~~~--~a~~a~~kal~l~p~~~~a~~~Lg~~y~~~g~~ 434 (1173)
.+|...+.++ +.+..++++-..+ .+-+.+++......+ .+..+|+.. +.+ ...--.+|.+.|.+
T Consensus 984 ~~Av~FfTrA-----qafsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~----g~~---~~~AVmLYHkAGm~ 1051 (1416)
T KOG3617|consen 984 VKAVKFFTRA-----QAFSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEEL----GGY---AHKAVMLYHKAGMI 1051 (1416)
T ss_pred HHHHHHHHHH-----HHHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHc----chh---hhHHHHHHHhhcch
Confidence 9987765542 2234444443332 333444444433222 222333332 111 11223456667777
Q ss_pred HHHHHHHHH----------HHhhCCCChhHHHHhHHHHHHhcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCCCh
Q 045024 435 KLARQAFDS----------ARSIDPSLALPWAGMSADVQASESLVDDAFESCLRAVQILPLAEFQIGLAKLAKLSGHLSS 504 (1173)
Q Consensus 435 e~A~~~f~~----------al~~~P~~~~a~~~l~a~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~la~l~~~~g~~~~ 504 (1173)
.+|++.-=+ +-.++|+.....++..++.+....+|++|..++-.+-+... +.-.+...+...
T Consensus 1052 ~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~~~--------AlqlC~~~nv~v 1123 (1416)
T KOG3617|consen 1052 GKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAREFSG--------ALQLCKNRNVRV 1123 (1416)
T ss_pred HHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH--------HHHHHhcCCCch
Confidence 777654211 12347777667777688888888899999887765544211 111111111111
Q ss_pred HHHHHHHHHHHH----hCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 045024 505 SQVFGAIQQAIQ----RGPH---YPESHNLYGLVCEARSDYQAAVVSYRLAR 549 (1173)
Q Consensus 505 ~~A~~~l~~al~----~~P~---~~~a~~~lg~i~~~~g~~~~A~~~~~kAl 549 (1173)
-+.+...+. ..|+ ....+..+|.++.++|.|..|-+-|.+|-
T Consensus 1124 ---tee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQAG 1172 (1416)
T KOG3617|consen 1124 ---TEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQAG 1172 (1416)
T ss_pred ---hHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhhh
Confidence 011111111 1222 24577889999999999999999999873
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.75 E-value=0.00094 Score=76.35 Aligned_cols=230 Identities=10% Similarity=0.010 Sum_probs=138.9
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHhhhhhhhhhHHHHHHHHHHHhhcCCCHHHHHHHHHhhc---ccHHHH
Q 045024 328 KSSYQRALYLAPWQANIYTDIAITSDLIYSLNEAYGHYQSAWHVSEKMALGALLLEGDNCQFWVTLGCLSN---YNGLKQ 404 (1173)
Q Consensus 328 ~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~A~k~~~~al~~~p~~~~~~~~Lg~~~~---~~~~a~ 404 (1173)
.-.|++++..-+-.+++|+..+..+...++.-.. .|.+-. -..++.
T Consensus 265 ~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~-------------------------------~~d~~~a~~~t~e~~ 313 (656)
T KOG1914|consen 265 MYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTE-------------------------------KGDVPDAKSLTDEAA 313 (656)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHH-------------------------------hcccccchhhHHHHH
Confidence 3456777777788888888777666544442111 111100 112344
Q ss_pred HHHHHHHhcC-CCcHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhhCCCCh-hHHHHhHHHHHHhcCCHHHHHHHHHHH
Q 045024 405 HALIRGLQLD-VSLADAWAHIGKLYGEVGE---KKLARQAFDSARSIDPSLA-LPWAGMSADVQASESLVDDAFESCLRA 479 (1173)
Q Consensus 405 ~a~~kal~l~-p~~~~a~~~Lg~~y~~~g~---~e~A~~~f~~al~~~P~~~-~a~~~l~a~~~~~~g~~~eA~~~~~~a 479 (1173)
.+|++++..- ..+.-.++.+++.-...-+ ++.--..+++++.+...++ .+|.. ....-.+..-...|+.+|.++
T Consensus 314 ~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~-~mn~irR~eGlkaaR~iF~ka 392 (656)
T KOG1914|consen 314 SIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQ-YMNFIRRAEGLKAARKIFKKA 392 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhH-HHHHHHHhhhHHHHHHHHHHH
Confidence 5566665332 2233444444444333333 6666777777776533222 24444 222333555578888899888
Q ss_pred HhcCCch-HHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCCC
Q 045024 480 VQILPLA-EFQIGLAKLAKLSGHLSSSQVFGAIQQAIQRGPHYPESHNLYGLVCEARSDYQAAVVSYRLARYAISSSSGT 558 (1173)
Q Consensus 480 l~~~p~~-~~~~~la~l~~~~g~~~~~~A~~~l~~al~~~P~~~~a~~~lg~i~~~~g~~~~A~~~~~kAl~l~~~~pe~ 558 (1173)
-+..-.. ..+..-+.+..... .+.+-|...|+--+...++++..-......+...|+-..|...|++++.. ...
T Consensus 393 R~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s-~l~--- 467 (656)
T KOG1914|consen 393 REDKRTRHHVFVAAALMEYYCS-KDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTS-VLS--- 467 (656)
T ss_pred hhccCCcchhhHHHHHHHHHhc-CChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhc-cCC---
Confidence 8765444 44444444433222 23567899999999999999998888899999999999999999998643 111
Q ss_pred CCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 045024 559 VPNSHFQDISINLARSLSRAGNALDAVRECESLERQGM 596 (1173)
Q Consensus 559 ~~~~~~~~~~~~La~~~~~~g~~~eAi~~~~~~~~~~p 596 (1173)
......+|...-..-..-|+...+++.=++.....|
T Consensus 468 --~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~ 503 (656)
T KOG1914|consen 468 --ADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFP 503 (656)
T ss_pred --hhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcc
Confidence 112234666666666677887777776666554444
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=98.73 E-value=2.3e-07 Score=89.16 Aligned_cols=104 Identities=26% Similarity=0.323 Sum_probs=74.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---hHHHHHH
Q 045024 127 WAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTS---PHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTS---IFPLLES 200 (1173)
Q Consensus 127 ~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~l 200 (1173)
..++.+|..+...|++++|+..|++++..+|++ +.+++.+|.++...|++++|+..|++++...|++ +.++..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 456667777777777777777777777776655 4567777777777777777777777777776664 4567777
Q ss_pred HHHHHHcCChHHHHHHHHHHHhhcCCCHHH
Q 045024 201 GNIFLMLGNFRKGVEQFQLALKISSENVSA 230 (1173)
Q Consensus 201 a~~~~~~g~~~~A~~~~~~al~~~p~~~~a 230 (1173)
|.++...|++++|+..++++++..|++..+
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 112 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRYPGSSAA 112 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHCcCChhH
Confidence 777777777777777777777777776543
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=98.71 E-value=2.6e-07 Score=88.83 Aligned_cols=98 Identities=20% Similarity=0.163 Sum_probs=38.3
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc---HHHHHHHH
Q 045024 60 FRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDD---SVSGEALCELLEHGGKESLEVVVCREASDKSPRA---FWAFRRLG 133 (1173)
Q Consensus 60 ~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~---~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~la 133 (1173)
++.+|..+.. .|++++|+..|++++..+|++ ..+++.+|.++...|++++|+..+++++...|++ +.++..+|
T Consensus 5 ~~~~~~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 5 YYDAALLVLK-AGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHH-cCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 3334444444 444444444444444433332 2233333444444444444444444333333332 23333344
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCC
Q 045024 134 YLQLHHKKWSEAVQSLQHAIRGYPT 158 (1173)
Q Consensus 134 ~~~~~~g~~~~A~~~l~~al~~~p~ 158 (1173)
.++...|++++|+..+++++...|+
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~p~ 108 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRYPG 108 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHCcC
Confidence 4444444444444444444444333
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.71 E-value=8.8e-06 Score=86.96 Aligned_cols=218 Identities=27% Similarity=0.347 Sum_probs=177.5
Q ss_pred HHHHHHHHHHhCCC--CHHHHHHHHHHHHHccCcHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHccCCHHHHHHHHH
Q 045024 7 LLLQLEDSLEANPD--DPSLHLDLGLHLWENSESKEKAAEHFVIAAK--LNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQ 82 (1173)
Q Consensus 7 Ai~~l~~al~~~P~--~~~~~~~lg~~~~~~~~~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~ 82 (1173)
+...+...+...+. ........+..+...+. +..+...+...+. ..+.....+...|..+.. .+++..++..+.
T Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 119 (291)
T COG0457 42 ALELLEEALELLPNSDLAGLLLLLALALLKLGR-LEEALELLEKALELELLPNLAEALLNLGLLLEA-LGKYEEALELLE 119 (291)
T ss_pred HHHHHHHHHhcCccccchHHHHHHHHHHHHccc-HHHHHHHHHHHHhhhhccchHHHHHHHHHHHHH-HhhHHHHHHHHH
Confidence 45666777777766 36777778888877777 8888888888886 677888888888988888 888999999999
Q ss_pred HHHhhCCCCHHHHHHHHH-HHHHCCCHHHHHHHHHHHHhhCC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 045024 83 RAVSLSPDDSVSGEALCE-LLEHGGKESLEVVVCREASDKSP---RAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPT 158 (1173)
Q Consensus 83 ~al~~~p~~~~a~~~La~-~~~~~g~~~~A~~~~~~al~~~p---~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~ 158 (1173)
.++...+.+.......+. ++...|+++.|...+.+++...| .........+..+...++++.++..+.+++...+.
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 199 (291)
T COG0457 120 KALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPD 199 (291)
T ss_pred HHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcc
Confidence 998887777555566666 78889999999999999887766 34556666667778888999999999999988888
Q ss_pred -CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCC
Q 045024 159 -SPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSE 226 (1173)
Q Consensus 159 -~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 226 (1173)
....+..++..+...++++.|+..+..++...|.....+...+..+...|.++++...+.+.+...|.
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 200 DDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred cchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 68888888999999999999999999999888886677777777777777788999999988888876
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=98.70 E-value=3.5e-07 Score=94.15 Aligned_cols=134 Identities=17% Similarity=0.165 Sum_probs=112.6
Q ss_pred CHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHcCChHHHHH
Q 045024 141 KWSEAVQSLQHAIRGYPTS--PHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTS---IFPLLESGNIFLMLGNFRKGVE 215 (1173)
Q Consensus 141 ~~~~A~~~l~~al~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~la~~~~~~g~~~~A~~ 215 (1173)
.+..+...+...++.++.+ ...++.+|.++...|++++|+..|++++.+.|+. +.++.++|.++...|++++|+.
T Consensus 14 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~ 93 (168)
T CHL00033 14 TFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALE 93 (168)
T ss_pred ccccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHH
Confidence 3555555565555555544 5677889999999999999999999998887653 4588999999999999999999
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHhhhcCC
Q 045024 216 QFQLALKISSENVSAHYGLASGLLGLAKQCINLGAFRWGASLLEDACKVAEANTRLAGN 274 (1173)
Q Consensus 216 ~~~~al~~~p~~~~a~~~la~~~~~l~~~~~a~g~~~~A~~~l~~Al~~~~~~~~~~~~ 274 (1173)
.|++++..+|.....+..++.++...|+.....|+++.|...+++++..+.+.....|.
T Consensus 94 ~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~ 152 (168)
T CHL00033 94 YYFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPG 152 (168)
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 99999999999999999999999999998889999999999999999999888877764
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.70 E-value=8.9e-06 Score=101.00 Aligned_cols=216 Identities=13% Similarity=0.062 Sum_probs=187.9
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHccCcHHHHHHHHHHHHH-hCCCCH----HHHHHHHHHHHHccCCHHHHHHHH
Q 045024 7 LLLQLEDSLEANPDDPSLHLDLGLHLWENSESKEKAAEHFVIAAK-LNPQNA----VAFRYLGHYYTRFSIDTQRAIKCY 81 (1173)
Q Consensus 7 Ai~~l~~al~~~P~~~~~~~~lg~~~~~~~~~~~~A~~~~~~al~-~~p~~~----~a~~~lg~~~~~~~g~~~eA~~~~ 81 (1173)
..+.|++.+..+|+..-.|...-...++.++ .++|.+.+++|+. +++... ..|..+-+.... -|.-+.-.+.|
T Consensus 1443 saeDferlvrssPNSSi~WI~YMaf~LelsE-iekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~-yG~eesl~kVF 1520 (1710)
T KOG1070|consen 1443 SAEDFERLVRSSPNSSILWIRYMAFHLELSE-IEKARKIAERALKTINFREEEEKLNIWIAYLNLENA-YGTEESLKKVF 1520 (1710)
T ss_pred CHHHHHHHHhcCCCcchHHHHHHHHHhhhhh-hHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHh-hCcHHHHHHHH
Confidence 3577889999999999999998888888888 9999999999994 555433 355555555555 67667788899
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--C
Q 045024 82 QRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPT--S 159 (1173)
Q Consensus 82 ~~al~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~--~ 159 (1173)
++|.+.. +...++..|..+|...+++++|.++++.+++...+....|..+|..++++++-+.|...+.+|++.-|. +
T Consensus 1521 eRAcqyc-d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eH 1599 (1710)
T KOG1070|consen 1521 ERACQYC-DAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEH 1599 (1710)
T ss_pred HHHHHhc-chHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhh
Confidence 9988764 334678999999999999999999999999998888899999999999999999999999999999997 7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhcC
Q 045024 160 PHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISS 225 (1173)
Q Consensus 160 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p 225 (1173)
.+.....|.+-++.|+.+.+...|+..+...|...+.|.-+...-.+.|+.+.+...|++++.+.-
T Consensus 1600 v~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l 1665 (1710)
T KOG1070|consen 1600 VEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKL 1665 (1710)
T ss_pred HHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCC
Confidence 788888899999999999999999999999999999999999999999999999999999998653
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.69 E-value=4.8e-07 Score=90.88 Aligned_cols=200 Identities=18% Similarity=0.181 Sum_probs=149.5
Q ss_pred CHHHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 045024 21 DPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCE 100 (1173)
Q Consensus 21 ~~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~ 100 (1173)
.+..++.+|..|-..|= +.-|.-.|.+++.+.|+-++++..+|..+.. .|+++.|.+.|+..++++|.+..+..+.|.
T Consensus 64 RA~l~fERGvlYDSlGL-~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~-a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi 141 (297)
T COG4785 64 RAQLLFERGVLYDSLGL-RALARNDFSQALAIRPDMPEVFNYLGIYLTQ-AGNFDAAYEAFDSVLELDPTYNYAHLNRGI 141 (297)
T ss_pred HHHHHHHhcchhhhhhH-HHHHhhhhhhhhhcCCCcHHHHHHHHHHHHh-cccchHHHHHhhhHhccCCcchHHHhccce
Confidence 56788999998888876 8999999999999999999999999999999 999999999999999999999999999999
Q ss_pred HHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 045024 101 LLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAI 180 (1173)
Q Consensus 101 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 180 (1173)
.++.-|++.-|.+.+.+-.+.+|++|.--..+-.. ...-+..+|...+.+-.+...+....|+..+.. .|+..+ .
T Consensus 142 ~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~-E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~y---LgkiS~-e 216 (297)
T COG4785 142 ALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLN-EQKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFY---LGKISE-E 216 (297)
T ss_pred eeeecCchHhhHHHHHHHHhcCCCChHHHHHHHHH-HhhCCHHHHHHHHHHHHHhccHhhhhHHHHHHH---HhhccH-H
Confidence 99999999999999999999999987432222111 233466777665544333323233333332222 233221 2
Q ss_pred HHHHHHHHhCCCC-------hHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCC
Q 045024 181 KSYGRAIELDDTS-------IFPLLESGNIFLMLGNFRKGVEQFQLALKISSEN 227 (1173)
Q Consensus 181 ~~~~~al~~~p~~-------~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 227 (1173)
..++++..-..++ .++++.+|..+...|+.++|...|+-++..+--+
T Consensus 217 ~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiannVyn 270 (297)
T COG4785 217 TLMERLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANNVYN 270 (297)
T ss_pred HHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhHHH
Confidence 2333333332222 5688999999999999999999999998765433
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.2e-06 Score=99.77 Aligned_cols=160 Identities=9% Similarity=-0.006 Sum_probs=114.7
Q ss_pred HHHHHHHHHccCC---HHHHHHHHHHHH---hhCCCCHHHHHHHHHHHHHC---------CCHHHHHHHHHHHHhhCCCc
Q 045024 61 RYLGHYYTRFSID---TQRAIKCYQRAV---SLSPDDSVSGEALCELLEHG---------GKESLEVVVCREASDKSPRA 125 (1173)
Q Consensus 61 ~~lg~~~~~~~g~---~~eA~~~~~~al---~~~p~~~~a~~~La~~~~~~---------g~~~~A~~~~~~al~~~p~~ 125 (1173)
+..|..... .+. .+.|...|.+++ +++|+...++-.++.++... .+..+|.+..+++++++|.|
T Consensus 259 ylrg~~~~~-~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~D 337 (458)
T PRK11906 259 MLAGKKELY-DFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVD 337 (458)
T ss_pred HHHHHHHhh-ccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCC
Confidence 555655554 443 345667777777 77777777777777666433 23567778888888888888
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHH-H
Q 045024 126 FWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNI-F 204 (1173)
Q Consensus 126 ~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~-~ 204 (1173)
+.++..+|.+....++++.|+..|++++.++|+.+.+++..|.+..-.|+.++|++.++++++++|....+-...-.+ .
T Consensus 338 a~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~ 417 (458)
T PRK11906 338 GKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDM 417 (458)
T ss_pred HHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHH
Confidence 888888888888888888888888888888888888888888888888888888888888888888764443322222 3
Q ss_pred HHcCChHHHHHHHHHHH
Q 045024 205 LMLGNFRKGVEQFQLAL 221 (1173)
Q Consensus 205 ~~~g~~~~A~~~~~~al 221 (1173)
+-....+.|+..|-+-.
T Consensus 418 ~~~~~~~~~~~~~~~~~ 434 (458)
T PRK11906 418 YVPNPLKNNIKLYYKET 434 (458)
T ss_pred HcCCchhhhHHHHhhcc
Confidence 33455777887776543
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=98.67 E-value=4.9e-07 Score=93.43 Aligned_cols=94 Identities=14% Similarity=0.135 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHH
Q 045024 57 AVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDD---SVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLG 133 (1173)
Q Consensus 57 ~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~---~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la 133 (1173)
+.+++.+|..+.. .|++++|+.+|+++++..|+. ..++..+|.++...|++++|+..+++++...|++..++..+|
T Consensus 35 a~~~~~lg~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg 113 (172)
T PRK02603 35 AFVYYRDGMSAQA-DGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIA 113 (172)
T ss_pred HHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHH
Confidence 3445555555555 555555555555555444332 234555555555555555555555555555555555555555
Q ss_pred HHHHHcCCHHHHHHHHHH
Q 045024 134 YLQLHHKKWSEAVQSLQH 151 (1173)
Q Consensus 134 ~~~~~~g~~~~A~~~l~~ 151 (1173)
.++...|+...+...++.
T Consensus 114 ~~~~~~g~~~~a~~~~~~ 131 (172)
T PRK02603 114 VIYHKRGEKAEEAGDQDE 131 (172)
T ss_pred HHHHHcCChHhHhhCHHH
Confidence 555555554444443333
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.67 E-value=8.4e-07 Score=88.81 Aligned_cols=115 Identities=21% Similarity=0.215 Sum_probs=63.1
Q ss_pred cCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc---HHHHHHHHHHHHHcCCHHH
Q 045024 71 SIDTQRAIKCYQRAVSLSPDD---SVSGEALCELLEHGGKESLEVVVCREASDKSPRA---FWAFRRLGYLQLHHKKWSE 144 (1173)
Q Consensus 71 ~g~~~eA~~~~~~al~~~p~~---~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~la~~~~~~g~~~~ 144 (1173)
.++...+...+++.++.+|+. ..+.+.+|.++...|++++|...|+.++...|+. +.+...++.++...|++++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 455555555566666555555 2335555555666666666666666655554432 3345555666666666666
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 045024 145 AVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRA 186 (1173)
Q Consensus 145 A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 186 (1173)
|+..++. +...+..+.++..+|.+|...|++++|+..|+++
T Consensus 104 Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 104 ALATLQQ-IPDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHh-ccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 6666544 2222333445555566666666666666665554
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=98.66 E-value=2.5e-07 Score=83.81 Aligned_cols=97 Identities=25% Similarity=0.468 Sum_probs=64.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcC
Q 045024 129 FRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLG 208 (1173)
Q Consensus 129 ~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g 208 (1173)
++.+|..+...|++++|+..++++++..|.+..++..+|.++...|++++|++.+++++...|.+..++..+|.++...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 45566666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred ChHHHHHHHHHHHhhcC
Q 045024 209 NFRKGVEQFQLALKISS 225 (1173)
Q Consensus 209 ~~~~A~~~~~~al~~~p 225 (1173)
++++|...+.++++..|
T Consensus 83 ~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 83 KYEEALEAYEKALELDP 99 (100)
T ss_pred hHHHHHHHHHHHHccCC
Confidence 66666666666666554
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.66 E-value=0.0029 Score=76.70 Aligned_cols=134 Identities=16% Similarity=0.063 Sum_probs=90.7
Q ss_pred HCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 045024 104 HGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSY 183 (1173)
Q Consensus 104 ~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 183 (1173)
..+++.+|+....+.++..|+...+...-|..+.++|+.++|..+++..-...+++...+..+-.+|..+|++++|...|
T Consensus 21 d~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Y 100 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLY 100 (932)
T ss_pred hhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHH
Confidence 44667777777777777777777777777777777777777776666665666666677777777777777777777777
Q ss_pred HHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCHHHHHHHHHHH
Q 045024 184 GRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLASGL 238 (1173)
Q Consensus 184 ~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~ 238 (1173)
++++..+|+ .+..+.+-.+|.+.+.|.+=.+.--+..+..|.++...+....+.
T Consensus 101 e~~~~~~P~-eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Sli 154 (932)
T KOG2053|consen 101 ERANQKYPS-EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLI 154 (932)
T ss_pred HHHHhhCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHH
Confidence 777777777 666666777777777766544444444445566665444443333
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=98.66 E-value=1e-06 Score=90.98 Aligned_cols=92 Identities=12% Similarity=0.127 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 045024 94 SGEALCELLEHGGKESLEVVVCREASDKSPRA---FWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAY 170 (1173)
Q Consensus 94 a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~ 170 (1173)
.++.+|..+...|++++|+.+|+++++..|+. ..++..+|.++...|++++|+..+++++...|.+...+..+|.++
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 116 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIY 116 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 34555555555555555555555555444331 234555555555555555555555555555555555555555555
Q ss_pred HHcCCHHHHHHHHHH
Q 045024 171 HRLGMFSAAIKSYGR 185 (1173)
Q Consensus 171 ~~~g~~~~A~~~~~~ 185 (1173)
...|+...+...+++
T Consensus 117 ~~~g~~~~a~~~~~~ 131 (172)
T PRK02603 117 HKRGEKAEEAGDQDE 131 (172)
T ss_pred HHcCChHhHhhCHHH
Confidence 555554444433333
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=98.63 E-value=1.3e-06 Score=104.87 Aligned_cols=149 Identities=17% Similarity=0.243 Sum_probs=87.4
Q ss_pred CCCCHHHH--HHHHHHHHHccCC---HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHH
Q 045024 53 NPQNAVAF--RYLGHYYTRFSID---TQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFW 127 (1173)
Q Consensus 53 ~p~~~~a~--~~lg~~~~~~~g~---~~eA~~~~~~al~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~ 127 (1173)
.|.++.+| +..|..+.. .++ ..+|+.+|+++++++|++..++-.++.++.....+. |.
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~-~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~-------------~~--- 395 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLN-SGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQ-------------PL--- 395 (517)
T ss_pred CCCCHHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcC-------------Cc---
Confidence 34444433 444554544 433 556666677777777776666666555543221110 00
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 045024 128 AFRRLGYLQLHHKKWSEAVQSLQHAIRG--YPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFL 205 (1173)
Q Consensus 128 a~~~la~~~~~~g~~~~A~~~l~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~ 205 (1173)
..++...+....++++.. +|.++.++..+|..+...|++++|...+++++.++| +..++..+|.++.
T Consensus 396 ----------~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~ 464 (517)
T PRK10153 396 ----------DEKQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYE 464 (517)
T ss_pred ----------cHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHH
Confidence 001233444444454443 555666666677777777777777777777777777 3667777777777
Q ss_pred HcCChHHHHHHHHHHHhhcCCCHH
Q 045024 206 MLGNFRKGVEQFQLALKISSENVS 229 (1173)
Q Consensus 206 ~~g~~~~A~~~~~~al~~~p~~~~ 229 (1173)
..|++++|++.|++++.++|.++.
T Consensus 465 ~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 465 LKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred HcCCHHHHHHHHHHHHhcCCCCch
Confidence 777777777777777777777664
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.62 E-value=2.7e-06 Score=85.64 Aligned_cols=201 Identities=17% Similarity=0.083 Sum_probs=155.5
Q ss_pred CHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q 045024 56 NAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYL 135 (1173)
Q Consensus 56 ~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~ 135 (1173)
.+..++..|..|-. .|-+.-|...|.+++.+.|+-+.++..+|..+...|+++.|.+.|+..++++|....+..+.|..
T Consensus 64 RA~l~fERGvlYDS-lGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~ 142 (297)
T COG4785 64 RAQLLFERGVLYDS-LGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIA 142 (297)
T ss_pred HHHHHHHhcchhhh-hhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhcccee
Confidence 35678889999999 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH-HHHHhCCCChHHHHHHHHHHHHcCChHHHH
Q 045024 136 QLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYG-RAIELDDTSIFPLLESGNIFLMLGNFRKGV 214 (1173)
Q Consensus 136 ~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~-~al~~~p~~~~a~~~la~~~~~~g~~~~A~ 214 (1173)
++--|++.-|.+.+.+-.+.+|++|---..+-.. ...-+..+|...+. ++...+.+ ...|...+ ..+|+..+ .
T Consensus 143 ~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~-E~k~dP~~A~tnL~qR~~~~d~e-~WG~~iV~---~yLgkiS~-e 216 (297)
T COG4785 143 LYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLN-EQKLDPKQAKTNLKQRAEKSDKE-QWGWNIVE---FYLGKISE-E 216 (297)
T ss_pred eeecCchHhhHHHHHHHHhcCCCChHHHHHHHHH-HhhCCHHHHHHHHHHHHHhccHh-hhhHHHHH---HHHhhccH-H
Confidence 9999999999999999999999987533222222 23446667766554 44443322 22222222 22344332 3
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHH
Q 045024 215 EQFQLALKISSENVSAHYGLASGLLGLAKQCINLGAFRWGASLLEDACK 263 (1173)
Q Consensus 215 ~~~~~al~~~p~~~~a~~~la~~~~~l~~~~~a~g~~~~A~~~l~~Al~ 263 (1173)
..++++.....++...--.+..++.-+|+.+...|+.+.|...|+-|+.
T Consensus 217 ~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaia 265 (297)
T COG4785 217 TLMERLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVA 265 (297)
T ss_pred HHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 4556666655666666667888899999999999999999888877765
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.2e-06 Score=105.25 Aligned_cols=137 Identities=12% Similarity=-0.033 Sum_probs=107.9
Q ss_pred hhCCCcHHHH--HHHHHHHHHcCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc--------CCHHHHHHHHHHH
Q 045024 120 DKSPRAFWAF--RRLGYLQLHHKK---WSEAVQSLQHAIRGYPTSPHLWEALGLAYHRL--------GMFSAAIKSYGRA 186 (1173)
Q Consensus 120 ~~~p~~~~a~--~~la~~~~~~g~---~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~--------g~~~~A~~~~~~a 186 (1173)
...|.+..+| +..|..+...++ ...|+.+|+++++++|++..++..++.++... ++...+.+..+++
T Consensus 331 ~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a 410 (517)
T PRK10153 331 QGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNI 410 (517)
T ss_pred ccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHh
Confidence 4445554443 445555555444 67888888888888888888888877776543 2345667777776
Q ss_pred HHh--CCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhhcHHHHHHH
Q 045024 187 IEL--DDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLASGLLGLAKQCINLGAFRWGASL 257 (1173)
Q Consensus 187 l~~--~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~l~~~~~a~g~~~~A~~~ 257 (1173)
+.+ +|.++.++..+|..+...|++++|...+++++.++| +..++..+|.++...|+...+...+.+|...
T Consensus 411 ~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L 482 (517)
T PRK10153 411 VALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNL 482 (517)
T ss_pred hhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 664 677788899999999999999999999999999999 4789999999999999999999999999864
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.5e-06 Score=97.37 Aligned_cols=186 Identities=17% Similarity=0.191 Sum_probs=128.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-----CChhHHHHhHHHHHHhcCCHHHHHHHHHHHHhcCCchHHHHHH
Q 045024 418 ADAWAHIGKLYGEVGEKKLARQAFDSARSIDP-----SLALPWAGMSADVQASESLVDDAFESCLRAVQILPLAEFQIGL 492 (1173)
Q Consensus 418 ~~a~~~Lg~~y~~~g~~e~A~~~f~~al~~~P-----~~~~a~~~l~a~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~l 492 (1173)
.+.+..-|..|...|++++|.+.|.++....- ....-.+..++.++ +.+++++|+..|++++.+.
T Consensus 35 a~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~-k~~~~~~Ai~~~~~A~~~y--------- 104 (282)
T PF14938_consen 35 ADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCY-KKGDPDEAIECYEKAIEIY--------- 104 (282)
T ss_dssp HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH-HHTTHHHHHHHHHHHHHHH---------
T ss_pred HHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HhhCHHHHHHHHHHHHHHH---------
Confidence 34566678888899999999999998876521 11111122245455 3447777777777766531
Q ss_pred HHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHhhcCCCCCCCCchHHHHHHH
Q 045024 493 AKLAKLSGHLSSSQVFGAIQQAIQRGPHYPESHNLYGLVCEAR-SDYQAAVVSYRLARYAISSSSGTVPNSHFQDISINL 571 (1173)
Q Consensus 493 a~l~~~~g~~~~~~A~~~l~~al~~~P~~~~a~~~lg~i~~~~-g~~~~A~~~~~kAl~l~~~~pe~~~~~~~~~~~~~L 571 (1173)
...|+. . .-...+..+|.+|... |++++|+++|++|+++.+.... ......++.++
T Consensus 105 ----~~~G~~--~--------------~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~---~~~a~~~~~~~ 161 (282)
T PF14938_consen 105 ----REAGRF--S--------------QAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGS---PHSAAECLLKA 161 (282)
T ss_dssp ----HHCT-H--H--------------HHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT----HHHHHHHHHHH
T ss_pred ----HhcCcH--H--------------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCC---hhhHHHHHHHH
Confidence 111210 0 1244678899999999 9999999999999998876432 23456678899
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCC------H-HHHHHHHHHHHHcCChHHHHHHHHHHhhhccccccch
Q 045024 572 ARSLSRAGNALDAVRECESLERQGMLD------A-EVLQVYAFSLWQLGKYDLALSMARNLASSVSAMEQSS 636 (1173)
Q Consensus 572 a~~~~~~g~~~eAi~~~~~~~~~~p~~------~-~~~~~la~a~~~~g~~~eA~~~~~~aL~~~p~~~~~~ 636 (1173)
|.++...|+|++|++.|+++......+ . ..++..+.++...|+...|...+++..+.+|....+.
T Consensus 162 A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~ 233 (282)
T PF14938_consen 162 ADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSR 233 (282)
T ss_dssp HHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcH
Confidence 999999999999999999998753322 1 2446778899999999999999999998887655444
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=98.62 E-value=3.9e-07 Score=82.48 Aligned_cols=81 Identities=22% Similarity=0.269 Sum_probs=28.8
Q ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 045024 71 SIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQ 150 (1173)
Q Consensus 71 ~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~ 150 (1173)
.|++++|+..++++++..|.+..++..+|.++...|++++|+..+++++...|.+..++..+|.++...|++++|...++
T Consensus 13 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 92 (100)
T cd00189 13 LGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYEEALEAYE 92 (100)
T ss_pred HhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhHHHHHHHHH
Confidence 33333333333333333333333333333333333333333333333333333333333333333333333333333333
Q ss_pred H
Q 045024 151 H 151 (1173)
Q Consensus 151 ~ 151 (1173)
+
T Consensus 93 ~ 93 (100)
T cd00189 93 K 93 (100)
T ss_pred H
Confidence 3
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.7e-06 Score=86.69 Aligned_cols=121 Identities=21% Similarity=0.193 Sum_probs=103.5
Q ss_pred HHHHHccCcHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHH
Q 045024 30 LHLWENSESKEKAAEHFVIAAKLNPQN---AVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDD---SVSGEALCELLE 103 (1173)
Q Consensus 30 ~~~~~~~~~~~~A~~~~~~al~~~p~~---~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~---~~a~~~La~~~~ 103 (1173)
...+..++ ...+...+++.++.+|+. ..+.+.+|.++.. .|++++|...|++++...|+. ..+.+.++.++.
T Consensus 19 ~~~~~~~~-~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~-~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~ 96 (145)
T PF09976_consen 19 LQALQAGD-PAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYE-QGDYDEAKAALEKALANAPDPELKPLARLRLARILL 96 (145)
T ss_pred HHHHHCCC-HHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHH
Confidence 33345665 888988999999999998 5678889999999 999999999999999987665 346889999999
Q ss_pred HCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 045024 104 HGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAI 153 (1173)
Q Consensus 104 ~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al 153 (1173)
..|++++|+..++.+ ...+-.+.++..+|.++...|++++|+..|++++
T Consensus 97 ~~~~~d~Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 97 QQGQYDEALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HcCCHHHHHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 999999999999763 3444567888999999999999999999999874
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=98.60 E-value=1.3e-06 Score=99.36 Aligned_cols=118 Identities=11% Similarity=-0.021 Sum_probs=73.1
Q ss_pred HHHHHHHHH---HhCCCCHHHHHHHHHHHHHc--------cCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHH
Q 045024 7 LLLQLEDSL---EANPDDPSLHLDLGLHLWEN--------SESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQ 75 (1173)
Q Consensus 7 Ai~~l~~al---~~~P~~~~~~~~lg~~~~~~--------~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~ 75 (1173)
|+..|.+++ ..+|+.+.++-.++.+++.. ..+..+|....+++++++|.++.++..+|.+... .++++
T Consensus 277 Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~-~~~~~ 355 (458)
T PRK11906 277 AMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGL-SGQAK 355 (458)
T ss_pred HHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-hcchh
Confidence 466666666 66666666666666665543 1113455566666666666666666666666666 66666
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc
Q 045024 76 RAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRA 125 (1173)
Q Consensus 76 eA~~~~~~al~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~ 125 (1173)
.|...|++|+.++|+.+.+++..|.+....|+.++|++.++++++++|..
T Consensus 356 ~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~ 405 (458)
T PRK11906 356 VSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRR 405 (458)
T ss_pred hHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchh
Confidence 66666666666666666666666666666666666666666666666654
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=98.60 E-value=1.8e-07 Score=80.40 Aligned_cols=67 Identities=31% Similarity=0.490 Sum_probs=47.3
Q ss_pred CHHHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccC-CHHHHHHHHHHHHhhCC
Q 045024 21 DPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSI-DTQRAIKCYQRAVSLSP 89 (1173)
Q Consensus 21 ~~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g-~~~eA~~~~~~al~~~p 89 (1173)
++..|..+|.+++..++ +++|+..|+++++.+|+++.+++.+|.++.. .| ++++|+..++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~-~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~-~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGD-YEEAIEYFEKAIELDPNNAEAYYNLGLAYMK-LGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTH-HHHHHHHHHHHHHHSTTHHHHHHHHHHHHHH-TTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH-hCccHHHHHHHHHHHHHcCc
Confidence 45667777777776665 7777777777777777777777777777777 76 57777777777777666
|
... |
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=98.58 E-value=1.2e-06 Score=90.16 Aligned_cols=78 Identities=14% Similarity=0.092 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q 045024 59 AFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDD---SVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYL 135 (1173)
Q Consensus 59 a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~---~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~ 135 (1173)
.++.+|.++.. .|++++|+..|++++.+.|+. +.++..+|.++...|++++|+..+++++...|.....+..+|.+
T Consensus 37 ~~~~~g~~~~~-~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i 115 (168)
T CHL00033 37 TYYRDGMSAQS-EGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVI 115 (168)
T ss_pred HHHHHHHHHHH-cCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHH
Confidence 34444444444 444444444444444443321 12344444444444444444444444444444443334344433
Q ss_pred HH
Q 045024 136 QL 137 (1173)
Q Consensus 136 ~~ 137 (1173)
+.
T Consensus 116 ~~ 117 (168)
T CHL00033 116 CH 117 (168)
T ss_pred HH
Confidence 33
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=98.57 E-value=2.2e-07 Score=79.89 Aligned_cols=65 Identities=31% Similarity=0.561 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCC
Q 045024 127 WAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLG-MFSAAIKSYGRAIELDD 191 (1173)
Q Consensus 127 ~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p 191 (1173)
..|..+|.++...|++++|+..|+++++.+|+++.+++.+|.++..+| ++++|++.++++++++|
T Consensus 4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 4 EAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 344444444444444444444444444444444444444444444444 34444444444444443
|
... |
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.56 E-value=0.0037 Score=71.67 Aligned_cols=255 Identities=14% Similarity=0.063 Sum_probs=166.0
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCC
Q 045024 12 EDSLEANPDDPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDD 91 (1173)
Q Consensus 12 ~~al~~~P~~~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~ 91 (1173)
++-++.+|.|..+|+.+-.-+-.+ . +++....|++.+...|..+.+|.......+. .++|+.-...|.+++..--+
T Consensus 10 ~~rie~nP~di~sw~~lire~qt~-~-~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~-skdfe~VEkLF~RCLvkvLn- 85 (656)
T KOG1914|consen 10 RERIEENPYDIDSWSQLIREAQTQ-P-IDKVRETYEQLVNVFPSSPRAWKLYIERELA-SKDFESVEKLFSRCLVKVLN- 85 (656)
T ss_pred HHHHhcCCccHHHHHHHHHHHccC-C-HHHHHHHHHHHhccCCCCcHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHhh-
Confidence 678899999999999998877544 4 8999999999999999999999999999999 99999999999999865433
Q ss_pred HHHH-HHHHHHHHHCCCHHHHHHHHHHH----Hh---hCCCcHHHHHHHHHHHH---------HcCCHHHHHHHHHHHHH
Q 045024 92 SVSG-EALCELLEHGGKESLEVVVCREA----SD---KSPRAFWAFRRLGYLQL---------HHKKWSEAVQSLQHAIR 154 (1173)
Q Consensus 92 ~~a~-~~La~~~~~~g~~~~A~~~~~~a----l~---~~p~~~~a~~~la~~~~---------~~g~~~~A~~~l~~al~ 154 (1173)
.+.| ..+..+-...|+...+....-++ +. .++.....|...+..+. .+.+.+.....|++++.
T Consensus 86 lDLW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~ 165 (656)
T KOG1914|consen 86 LDLWKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALV 165 (656)
T ss_pred HhHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhc
Confidence 3443 33444455555555444433333 22 34455555555444332 23366677788888886
Q ss_pred hCCCCHH-HHH-----------HHH--HHHHHcCCHHHHHHHHHHHHHhC-------CC-----------ChHHHHHHHH
Q 045024 155 GYPTSPH-LWE-----------ALG--LAYHRLGMFSAAIKSYGRAIELD-------DT-----------SIFPLLESGN 202 (1173)
Q Consensus 155 ~~p~~~~-~~~-----------~la--~~~~~~g~~~~A~~~~~~al~~~-------p~-----------~~~a~~~la~ 202 (1173)
.--.+.+ .|. ..| .+-.+...|-.|...+++...+. |. ..+.|.++..
T Consensus 166 tPm~nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~ 245 (656)
T KOG1914|consen 166 TPMHNLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIK 245 (656)
T ss_pred CccccHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHH
Confidence 5333321 111 111 12233455667777776655431 11 1222333333
Q ss_pred HHHHcC------Ch--HHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHhh
Q 045024 203 IFLMLG------NF--RKGVEQFQLALKISSENVSAHYGLASGLLGLAKQCINLGAFRWGASLLEDACKVAEANTR 270 (1173)
Q Consensus 203 ~~~~~g------~~--~~A~~~~~~al~~~p~~~~a~~~la~~~~~l~~~~~a~g~~~~A~~~l~~Al~~~~~~~~ 270 (1173)
.-...+ .. ..-.-.|++++..-+-.++.|+..+..+...++.+...|+...|-..-.++...+.....
T Consensus 246 wEksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~ 321 (656)
T KOG1914|consen 246 WEKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIE 321 (656)
T ss_pred HHhcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHH
Confidence 222211 11 123346788888888899999999999999899888888888777777777777666543
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.55 E-value=8.5e-05 Score=79.24 Aligned_cols=246 Identities=24% Similarity=0.263 Sum_probs=193.9
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHccCCHHHHHHHHHHHHh--h
Q 045024 12 EDSLEANPDDPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQ--NAVAFRYLGHYYTRFSIDTQRAIKCYQRAVS--L 87 (1173)
Q Consensus 12 ~~al~~~P~~~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~--~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~--~ 87 (1173)
.......+.........+.........+..+...+...+...+. ........+..+.. .+++..+...+...+. .
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 90 (291)
T COG0457 12 LEALAKLLAEALALLEAGLALLELLGELAEALELLEEALELLPNSDLAGLLLLLALALLK-LGRLEEALELLEKALELEL 90 (291)
T ss_pred hHHHHhChhhHHHHHHhhhhhhHHHhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHH-cccHHHHHHHHHHHHhhhh
Confidence 33334444444444444444444322378888888888888876 47888899999999 9999999999999997 6
Q ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHH-HHHHcCCHHHHHHHHHHHHHhCC---CCHHHH
Q 045024 88 SPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGY-LQLHHKKWSEAVQSLQHAIRGYP---TSPHLW 163 (1173)
Q Consensus 88 ~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~-~~~~~g~~~~A~~~l~~al~~~p---~~~~~~ 163 (1173)
.+.....+...+..+...+++..++..+..++...+.+.......+. ++...|+++.|...+.+++..+| ......
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 170 (291)
T COG0457 91 LPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEAL 170 (291)
T ss_pred ccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHH
Confidence 88888899999999999999999999999999988877555566666 89999999999999999988777 456667
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHH
Q 045024 164 EALGLAYHRLGMFSAAIKSYGRAIELDDT-SIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLASGLLGLA 242 (1173)
Q Consensus 164 ~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~l~ 242 (1173)
...+..+...++++.|+..+.+++...+. ....+..++..+...+++++|...+..++...|.........+..+..
T Consensus 171 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 248 (291)
T COG0457 171 LALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLE-- 248 (291)
T ss_pred HHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHH--
Confidence 77777788999999999999999999999 689999999999999999999999999999998844444444444442
Q ss_pred HHHHHhhcHHHHHHHHHHHHHHH
Q 045024 243 KQCINLGAFRWGASLLEDACKVA 265 (1173)
Q Consensus 243 ~~~~a~g~~~~A~~~l~~Al~~~ 265 (1173)
.+.+..+...+.+++...
T Consensus 249 -----~~~~~~~~~~~~~~~~~~ 266 (291)
T COG0457 249 -----LGRYEEALEALEKALELD 266 (291)
T ss_pred -----cCCHHHHHHHHHHHHHhC
Confidence 223555554455444433
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.49 E-value=1.8e-06 Score=95.77 Aligned_cols=114 Identities=23% Similarity=0.313 Sum_probs=94.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCC---------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Q 045024 130 RRLGYLQLHHKKWSEAVQSLQHAIRGYPT---------------SPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSI 194 (1173)
Q Consensus 130 ~~la~~~~~~g~~~~A~~~l~~al~~~p~---------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 194 (1173)
...|..+++.|+|..|...|++++..-+. -..++.+++.++.++++|.+|+..++++|+++|+|+
T Consensus 212 ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~ 291 (397)
T KOG0543|consen 212 KERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNNV 291 (397)
T ss_pred HHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCch
Confidence 44566777777777777777776654221 134788999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHH
Q 045024 195 FPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLASGLLGLAK 243 (1173)
Q Consensus 195 ~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~l~~ 243 (1173)
.++++.|.++..+|+|+.|+..|+++++.+|+|..+...+..+-.+..+
T Consensus 292 KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~ 340 (397)
T KOG0543|consen 292 KALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIRE 340 (397)
T ss_pred hHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999998887777666555444
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=98.48 E-value=3.9e-07 Score=81.75 Aligned_cols=19 Identities=26% Similarity=0.394 Sum_probs=7.0
Q ss_pred HHHHHHcCCHHHHHHHHHH
Q 045024 133 GYLQLHHKKWSEAVQSLQH 151 (1173)
Q Consensus 133 a~~~~~~g~~~~A~~~l~~ 151 (1173)
|.++++.|++++|+..+++
T Consensus 32 a~~~~~~~~y~~A~~~~~~ 50 (84)
T PF12895_consen 32 AQCYFQQGKYEEAIELLQK 50 (84)
T ss_dssp HHHHHHTTHHHHHHHHHHC
T ss_pred HHHHHHCCCHHHHHHHHHH
Confidence 3333333333333333333
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=98.48 E-value=3.1e-07 Score=82.39 Aligned_cols=82 Identities=17% Similarity=0.299 Sum_probs=72.6
Q ss_pred HcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHH
Q 045024 138 HHKKWSEAVQSLQHAIRGYPT--SPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVE 215 (1173)
Q Consensus 138 ~~g~~~~A~~~l~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~ 215 (1173)
.+|++++|+..+++++..+|. +...++.+|.+|++.|++++|+..+++ .+.+|.++...+.+|.++..+|++++|++
T Consensus 1 ~~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 1 DQGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp HTT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CCccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 368999999999999999995 466778899999999999999999999 88888888899999999999999999999
Q ss_pred HHHHH
Q 045024 216 QFQLA 220 (1173)
Q Consensus 216 ~~~~a 220 (1173)
.|+++
T Consensus 80 ~l~~~ 84 (84)
T PF12895_consen 80 ALEKA 84 (84)
T ss_dssp HHHHH
T ss_pred HHhcC
Confidence 99874
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=98.47 E-value=2.5e-06 Score=84.07 Aligned_cols=108 Identities=16% Similarity=0.118 Sum_probs=86.8
Q ss_pred hhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHH
Q 045024 120 DKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLE 199 (1173)
Q Consensus 120 ~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~ 199 (1173)
.+.++.-+..+..|.-++..|++++|...|+-....+|.+++.+..||.++..+|+|++|+..|..+..++++++...+.
T Consensus 31 gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~ 110 (165)
T PRK15331 31 GIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFF 110 (165)
T ss_pred CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccch
Confidence 33444556677788888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhhcCCCH
Q 045024 200 SGNIFLMLGNFRKGVEQFQLALKISSENV 228 (1173)
Q Consensus 200 la~~~~~~g~~~~A~~~~~~al~~~p~~~ 228 (1173)
.|.++..+|+.+.|+..|+.++. .|.+.
T Consensus 111 agqC~l~l~~~~~A~~~f~~a~~-~~~~~ 138 (165)
T PRK15331 111 TGQCQLLMRKAAKARQCFELVNE-RTEDE 138 (165)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHh-CcchH
Confidence 88888888888888888888877 34433
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=98.46 E-value=5.1e-05 Score=82.04 Aligned_cols=242 Identities=16% Similarity=0.135 Sum_probs=179.9
Q ss_pred HHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHccCCHHHHHHHHHHHHh----hCCCC--HH
Q 045024 23 SLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAV---AFRYLGHYYTRFSIDTQRAIKCYQRAVS----LSPDD--SV 93 (1173)
Q Consensus 23 ~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~~---a~~~lg~~~~~~~g~~~eA~~~~~~al~----~~p~~--~~ 93 (1173)
.-....|.-++...+ +++|+..+.+.+..-.+... .+-.+..+... +|.|++++..--..+. .+..+ -+
T Consensus 7 k~q~~~g~~Ly~s~~-~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~-~g~y~~mL~~a~sqi~~a~~~~ds~~~~e 84 (518)
T KOG1941|consen 7 KKQIEKGLQLYQSNQ-TEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSE-MGRYKEMLKFAVSQIDTARELEDSDFLLE 84 (518)
T ss_pred HHHHHHHHhHhcCch-HHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566777777776 99999999998865444332 33334566677 7888877665433333 22222 24
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHH
Q 045024 94 SGEALCELLEHGGKESLEVVVCREASDKSPRA-----FWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTS------PHL 162 (1173)
Q Consensus 94 a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~-----~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~------~~~ 162 (1173)
++..+++.+.+..++.+++.+..-.+...... ......+|..+.-++.++++++.|+.+++...++ ..+
T Consensus 85 a~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqv 164 (518)
T KOG1941|consen 85 AYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQV 164 (518)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeeh
Confidence 58889999999999999999988877764332 3566779999999999999999999999864432 347
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----C------hHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCHHHHH
Q 045024 163 WEALGLAYHRLGMFSAAIKSYGRAIELDDT----S------IFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHY 232 (1173)
Q Consensus 163 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~----~------~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~ 232 (1173)
+..+|..+.+..|+++|.-...++.++... + ..+++.++..+..+|+...|.++.+++.++.-...+ .-
T Consensus 165 cv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gd-ra 243 (518)
T KOG1941|consen 165 CVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGD-RA 243 (518)
T ss_pred hhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCC-hH
Confidence 789999999999999999999998887432 2 345678899999999999999999999876433221 11
Q ss_pred HHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHH
Q 045024 233 GLASGLLGLAKQCINLGAFRWGASLLEDACKVAEA 267 (1173)
Q Consensus 233 ~la~~~~~l~~~~~a~g~~~~A~~~l~~Al~~~~~ 267 (1173)
..+.+...+++++...|+.+.|..-|++|......
T Consensus 244 ~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~ 278 (518)
T KOG1941|consen 244 LQARCLLCFADIYRSRGDLERAFRRYEQAMGTMAS 278 (518)
T ss_pred HHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhh
Confidence 34667788888888999999999999988876544
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=98.45 E-value=5.4e-07 Score=76.40 Aligned_cols=62 Identities=21% Similarity=0.370 Sum_probs=30.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCC
Q 045024 166 LGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSEN 227 (1173)
Q Consensus 166 la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 227 (1173)
+|..++..|++++|+..|+++++.+|+++.+++.+|.++..+|++++|+..|+++++.+|++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 44445555555555555555555555555555555555555555555555555555555544
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=98.45 E-value=6.5e-07 Score=75.86 Aligned_cols=63 Identities=29% Similarity=0.463 Sum_probs=37.2
Q ss_pred HHHHHHHHccCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCC
Q 045024 27 DLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDD 91 (1173)
Q Consensus 27 ~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~ 91 (1173)
.+|..++..|+ +++|+..|+++++.+|+++.+++.+|.++.. .|++++|+..|+++++.+|++
T Consensus 2 ~~a~~~~~~g~-~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~-~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 2 ALARALYQQGD-YDEAIAAFEQALKQDPDNPEAWYLLGRILYQ-QGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHHHCTH-HHHHHHHHHHHHCCSTTHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHSTT-
T ss_pred hHHHHHHHcCC-HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHCcCC
Confidence 34555555555 6666666666666666666666666666666 666666666666666666654
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=98.43 E-value=6e-06 Score=90.39 Aligned_cols=105 Identities=16% Similarity=0.131 Sum_probs=94.0
Q ss_pred HHHHHHHHHHH-HHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---ChHHHH
Q 045024 126 FWAFRRLGYLQ-LHHKKWSEAVQSLQHAIRGYPTS---PHLWEALGLAYHRLGMFSAAIKSYGRAIELDDT---SIFPLL 198 (1173)
Q Consensus 126 ~~a~~~la~~~-~~~g~~~~A~~~l~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~a~~ 198 (1173)
....+..+..+ ...|+|++|+..|++.++..|++ +.+++.+|.+|+..|++++|+..|+++++..|+ .+++++
T Consensus 142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~ 221 (263)
T PRK10803 142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF 221 (263)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence 45666777765 66799999999999999999987 589999999999999999999999999998887 478899
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhhcCCCHHH
Q 045024 199 ESGNIFLMLGNFRKGVEQFQLALKISSENVSA 230 (1173)
Q Consensus 199 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a 230 (1173)
.+|.++..+|++++|...|+++++..|++..+
T Consensus 222 klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a 253 (263)
T PRK10803 222 KVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGA 253 (263)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHH
Confidence 99999999999999999999999999998754
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=98.41 E-value=4.5e-06 Score=93.56 Aligned_cols=165 Identities=16% Similarity=0.165 Sum_probs=114.9
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhhCC--CC----HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCC--C----cHHHHH
Q 045024 63 LGHYYTRFSIDTQRAIKCYQRAVSLSP--DD----SVSGEALCELLEHGGKESLEVVVCREASDKSP--R----AFWAFR 130 (1173)
Q Consensus 63 lg~~~~~~~g~~~eA~~~~~~al~~~p--~~----~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p--~----~~~a~~ 130 (1173)
.|..|.. .|++++|..+|.++.+..- ++ ...+...+.++.+. ++++|+.++++++...- + -...+.
T Consensus 41 Aa~~fk~-~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~ 118 (282)
T PF14938_consen 41 AANCFKL-AKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQAAKCLK 118 (282)
T ss_dssp HHHHHHH-TT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHHHHHHHH
T ss_pred HHHHHHH-HhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 3556666 7777777777777765431 11 12245555555444 88888888888876521 1 245677
Q ss_pred HHHHHHHHc-CCHHHHHHHHHHHHHhCC--CC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------h-HH
Q 045024 131 RLGYLQLHH-KKWSEAVQSLQHAIRGYP--TS----PHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTS------I-FP 196 (1173)
Q Consensus 131 ~la~~~~~~-g~~~~A~~~l~~al~~~p--~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~-~a 196 (1173)
.+|.+|... |++++|++.|++++.... +. ...+..+|.++.+.|+|++|++.|+++....-++ . ..
T Consensus 119 ~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~ 198 (282)
T PF14938_consen 119 ELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEY 198 (282)
T ss_dssp HHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHH
Confidence 889999888 999999999999988632 11 4467789999999999999999999998754221 1 34
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhhcCCCHH
Q 045024 197 LLESGNIFLMLGNFRKGVEQFQLALKISSENVS 229 (1173)
Q Consensus 197 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 229 (1173)
++..+.+++..|++..|...+++....+|....
T Consensus 199 ~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~ 231 (282)
T PF14938_consen 199 FLKAILCHLAMGDYVAARKALERYCSQDPSFAS 231 (282)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCC
Confidence 566788899999999999999999999886543
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=98.40 E-value=3.6e-06 Score=82.96 Aligned_cols=100 Identities=11% Similarity=-0.149 Sum_probs=67.7
Q ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 045024 89 PDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGL 168 (1173)
Q Consensus 89 p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~ 168 (1173)
++..+..+..|.-++..|++++|...|+-+...+|.++..+..+|.++..+++|++|+..|..+..++++++...+..|.
T Consensus 34 ~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agq 113 (165)
T PRK15331 34 QDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQ 113 (165)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHH
Confidence 33444566666666666667777666666666666666666667777777777777777777666666666666667777
Q ss_pred HHHHcCCHHHHHHHHHHHHH
Q 045024 169 AYHRLGMFSAAIKSYGRAIE 188 (1173)
Q Consensus 169 ~~~~~g~~~~A~~~~~~al~ 188 (1173)
+|...|+.+.|+..|+.+++
T Consensus 114 C~l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 114 CQLLMRKAAKARQCFELVNE 133 (165)
T ss_pred HHHHhCCHHHHHHHHHHHHh
Confidence 77777777777777766666
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=98.40 E-value=7.6e-06 Score=89.61 Aligned_cols=101 Identities=16% Similarity=0.181 Sum_probs=49.5
Q ss_pred HHHHHHHHHHH-HccCcHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCC---HHHH
Q 045024 23 SLHLDLGLHLW-ENSESKEKAAEHFVIAAKLNPQN---AVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDD---SVSG 95 (1173)
Q Consensus 23 ~~~~~lg~~~~-~~~~~~~~A~~~~~~al~~~p~~---~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~---~~a~ 95 (1173)
...|..+..+. ..++ |++|+..|++.++..|++ +.+++.+|.+|+. .|++++|+..|+++++..|++ ++++
T Consensus 143 ~~~Y~~A~~l~~~~~~-y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~-~g~~~~A~~~f~~vv~~yP~s~~~~dAl 220 (263)
T PRK10803 143 NTDYNAAIALVQDKSR-QDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYN-KGKKDDAAYYFASVVKNYPKSPKAADAM 220 (263)
T ss_pred HHHHHHHHHHHHhcCC-HHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHCCCCcchhHHH
Confidence 34444444432 2233 555555555555555554 3455555555555 555555555555555544442 3334
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhCCCc
Q 045024 96 EALCELLEHGGKESLEVVVCREASDKSPRA 125 (1173)
Q Consensus 96 ~~La~~~~~~g~~~~A~~~~~~al~~~p~~ 125 (1173)
+.+|.++...|++++|+..|+++++..|+.
T Consensus 221 ~klg~~~~~~g~~~~A~~~~~~vi~~yP~s 250 (263)
T PRK10803 221 FKVGVIMQDKGDTAKAKAVYQQVIKKYPGT 250 (263)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 444555545555555555555555554444
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.39 E-value=3.5e-05 Score=95.98 Aligned_cols=214 Identities=15% Similarity=0.112 Sum_probs=180.6
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHh-hCCCCH----HHHHHHHHHHHHCCCHHHHHHHH
Q 045024 41 KAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVS-LSPDDS----VSGEALCELLEHGGKESLEVVVC 115 (1173)
Q Consensus 41 ~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~-~~p~~~----~a~~~La~~~~~~g~~~~A~~~~ 115 (1173)
+..+.|++.+.-+|+....|...-....+ .++.++|.+.+++|+. +++... ..|..+-++...-|.-+.-.+.|
T Consensus 1442 esaeDferlvrssPNSSi~WI~YMaf~Le-lsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVF 1520 (1710)
T KOG1070|consen 1442 ESAEDFERLVRSSPNSSILWIRYMAFHLE-LSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVF 1520 (1710)
T ss_pred cCHHHHHHHHhcCCCcchHHHHHHHHHhh-hhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHH
Confidence 45677889999999999999999999999 9999999999999986 454433 34666667777778888888899
Q ss_pred HHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--C
Q 045024 116 REASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDT--S 193 (1173)
Q Consensus 116 ~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~ 193 (1173)
+++.+... ....+..|..+|...+.+++|.++|+.+++........|..+|..++++.+-++|...+.+|++--|. +
T Consensus 1521 eRAcqycd-~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eH 1599 (1710)
T KOG1070|consen 1521 ERACQYCD-AYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEH 1599 (1710)
T ss_pred HHHHHhcc-hHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhh
Confidence 99987643 34678889999999999999999999999998888999999999999999999999999999999998 7
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHH
Q 045024 194 IFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLASGLLGLAKQCINLGAFRWGASLLEDACK 263 (1173)
Q Consensus 194 ~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~l~~~~~a~g~~~~A~~~l~~Al~ 263 (1173)
.......|.+.++.|+.+.+...|+..+..+|...+.|.-+...-+..+. ......+|++++.
T Consensus 1600 v~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~-------~~~vR~lfeRvi~ 1662 (1710)
T KOG1070|consen 1600 VEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGD-------IKYVRDLFERVIE 1662 (1710)
T ss_pred HHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCC-------HHHHHHHHHHHHh
Confidence 78888899999999999999999999999999999998766665555444 4445555555554
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.38 E-value=6e-06 Score=91.76 Aligned_cols=147 Identities=17% Similarity=0.140 Sum_probs=102.0
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Q 045024 59 AFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLH 138 (1173)
Q Consensus 59 a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~ 138 (1173)
.....|..|++ .|+|..|...|++++..-+..... +.++.... . ++ -..++.+++.++.+
T Consensus 210 ~~ke~Gn~~fK-~gk~~~A~~~Yerav~~l~~~~~~------------~~ee~~~~-~-~~-----k~~~~lNlA~c~lK 269 (397)
T KOG0543|consen 210 RKKERGNVLFK-EGKFKLAKKRYERAVSFLEYRRSF------------DEEEQKKA-E-AL-----KLACHLNLAACYLK 269 (397)
T ss_pred HHHHhhhHHHh-hchHHHHHHHHHHHHHHhhccccC------------CHHHHHHH-H-HH-----HHHHhhHHHHHHHh
Confidence 34567888888 888888888888887643221110 00010000 0 00 12456778888888
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHH-HHHH
Q 045024 139 HKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKG-VEQF 217 (1173)
Q Consensus 139 ~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A-~~~~ 217 (1173)
+++|.+|+....+++..+|+|..+++..|.++...|+|+.|+..|+++++++|+|-.+...+..+..+..++.+. .+.|
T Consensus 270 l~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y 349 (397)
T KOG0543|consen 270 LKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMY 349 (397)
T ss_pred hhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888888888888888888888888888888888888888888877777777777766655544 6777
Q ss_pred HHHHhhcC
Q 045024 218 QLALKISS 225 (1173)
Q Consensus 218 ~~al~~~p 225 (1173)
.+++..-+
T Consensus 350 ~~mF~k~~ 357 (397)
T KOG0543|consen 350 ANMFAKLA 357 (397)
T ss_pred HHHhhccc
Confidence 77776544
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.37 E-value=5.7e-05 Score=79.75 Aligned_cols=171 Identities=16% Similarity=0.129 Sum_probs=110.9
Q ss_pred HHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc---HHHHH
Q 045024 57 AVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDS---VSGEALCELLEHGGKESLEVVVCREASDKSPRA---FWAFR 130 (1173)
Q Consensus 57 ~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~---~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~ 130 (1173)
+..++.-|...++ .|++++|...|+.+....|..+ .+...++..+++.+++++|+...++-+.+.|++ ..+++
T Consensus 34 ~~~LY~~g~~~L~-~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Y 112 (254)
T COG4105 34 ASELYNEGLTELQ-KGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYY 112 (254)
T ss_pred HHHHHHHHHHHHh-cCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHH
Confidence 4556666666666 6666666666666666555443 345566666666666666666666666665554 23445
Q ss_pred HHHHHHHHc--------CCHHHHHHHHHHHHHhCCCC-----------------HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 045024 131 RLGYLQLHH--------KKWSEAVQSLQHAIRGYPTS-----------------PHLWEALGLAYHRLGMFSAAIKSYGR 185 (1173)
Q Consensus 131 ~la~~~~~~--------g~~~~A~~~l~~al~~~p~~-----------------~~~~~~la~~~~~~g~~~~A~~~~~~ 185 (1173)
..|.+++.. .-..+|+..|+..+...|+. ..--..+|..|.+.|.+..|+.-++.
T Consensus 113 lkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~ 192 (254)
T COG4105 113 LKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEE 192 (254)
T ss_pred HHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHH
Confidence 555554432 12345566666666666654 12234678899999999999999999
Q ss_pred HHHhCCCC---hHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCH
Q 045024 186 AIELDDTS---IFPLLESGNIFLMLGNFRKGVEQFQLALKISSENV 228 (1173)
Q Consensus 186 al~~~p~~---~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 228 (1173)
+++..|+. .+++..+..+|..+|-.++|...-.-+-...|+++
T Consensus 193 v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~s~ 238 (254)
T COG4105 193 VLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYPDSQ 238 (254)
T ss_pred HHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCc
Confidence 99987664 57788899999999999998776554444445544
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.35 E-value=8.8e-06 Score=93.54 Aligned_cols=124 Identities=15% Similarity=0.202 Sum_probs=110.7
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 045024 95 GEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLG 174 (1173)
Q Consensus 95 ~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g 174 (1173)
-..+..++...++++.|+..+++..+.+|+ +...++.++...++..+|++.+.+++..+|.+...+...+..+...+
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~ 248 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKK 248 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC
Confidence 344555667778999999999999988875 45668999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 045024 175 MFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLAL 221 (1173)
Q Consensus 175 ~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al 221 (1173)
+++.|++..+++++..|++...|+.|+.+|...|+++.|+..+..+-
T Consensus 249 ~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 249 KYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred CHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 99999999999999999999999999999999999999998877553
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.33 E-value=9.9e-06 Score=93.15 Aligned_cols=120 Identities=19% Similarity=0.239 Sum_probs=110.0
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCH
Q 045024 63 LGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKW 142 (1173)
Q Consensus 63 lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~ 142 (1173)
+-.++.. .++++.|+..|++..+.+|+ +...++.++...++..+|++.+.++++..|.+...+...+..+...+++
T Consensus 175 Ll~~l~~-t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~ 250 (395)
T PF09295_consen 175 LLKYLSL-TQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKY 250 (395)
T ss_pred HHHHHhh-cccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCH
Confidence 4455556 88999999999999988865 6667999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 045024 143 SEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRA 186 (1173)
Q Consensus 143 ~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 186 (1173)
+.|+...++++...|.+...|+.|+.+|...|+++.|+..++.+
T Consensus 251 ~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 251 ELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred HHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999887754
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.29 E-value=2.4e-07 Score=98.61 Aligned_cols=191 Identities=13% Similarity=0.056 Sum_probs=133.2
Q ss_pred HHHHHHHHHHccCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 045024 25 HLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEH 104 (1173)
Q Consensus 25 ~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~ 104 (1173)
.-..|.-|+.+|. |++|+.+|.+++..+|.++..+.+.+.+|++ .+.+..|......++.++.....+|...+..-..
T Consensus 100 iKE~GN~yFKQgK-y~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk-~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~ 177 (536)
T KOG4648|consen 100 IKERGNTYFKQGK-YEEAIDCYSTAIAVYPHNPVYHINRALAYLK-QKSFAQAEEDCEAAIALDKLYVKAYSRRMQARES 177 (536)
T ss_pred HHHhhhhhhhccc-hhHHHHHhhhhhccCCCCccchhhHHHHHHH-HHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 4567899999998 9999999999999999999999999999999 9999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 045024 105 GGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHH----------KKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLG 174 (1173)
Q Consensus 105 ~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~----------g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g 174 (1173)
.|+..+|.+.++.++++.|++.+..-.++.+-.-. | +-+|.+...+++. .-.-|..+...|
T Consensus 178 Lg~~~EAKkD~E~vL~LEP~~~ELkK~~a~i~Sl~E~~I~~KsT~G-~~~A~Q~~~Q~l~--------~K~~G~~Fsk~~ 248 (536)
T KOG4648|consen 178 LGNNMEAKKDCETVLALEPKNIELKKSLARINSLRERKIATKSTPG-FTPARQGMIQILP--------IKKPGYKFSKKA 248 (536)
T ss_pred HhhHHHHHHhHHHHHhhCcccHHHHHHHHHhcchHhhhHHhhcCCC-CCccccchhhhcc--------ccCcchhhhhhh
Confidence 99999999999999999999765544433332100 1 1111111111111 112255556666
Q ss_pred CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCC
Q 045024 175 MFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSEN 227 (1173)
Q Consensus 175 ~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 227 (1173)
.++.++.++.+-+..+.++...... +..|.+.-+++.|+...-+.+..+|..
T Consensus 249 ~~~~~i~~~~~~~A~~~~~~~L~~~-~~~~~KI~~~~~~~~~~~~~~~~~~s~ 300 (536)
T KOG4648|consen 249 MRSVPVVDVVSPRATIDDSNQLRIS-DEDIDKIFNSNCGIIEEVKKTNPKPTP 300 (536)
T ss_pred ccccceeEeeccccccCccccCccc-HHHHHHHhhcchhHHHHHHhcCCCCCc
Confidence 6666666665555444333322222 455555556666665555555554443
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.27 E-value=0.022 Score=67.04 Aligned_cols=160 Identities=14% Similarity=0.125 Sum_probs=86.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhHHHHhHHHHHHhcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHh
Q 045024 420 AWAHIGKLYGEVGEKKLARQAFDSARSIDPSLALPWAGMSADVQASESLVDDAFESCLRAVQILPLAEFQIGLAKLAKLS 499 (1173)
Q Consensus 420 a~~~Lg~~y~~~g~~e~A~~~f~~al~~~P~~~~a~~~l~a~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~la~l~~~~ 499 (1173)
.|-.+++-|...|+|+-|.+.|.++=. +.-....|.+.|++.+|..+-.+...-......+...+.-.-..
T Consensus 767 yy~~iadhyan~~dfe~ae~lf~e~~~---------~~dai~my~k~~kw~da~kla~e~~~~e~t~~~yiakaedldeh 837 (1636)
T KOG3616|consen 767 YYGEIADHYANKGDFEIAEELFTEADL---------FKDAIDMYGKAGKWEDAFKLAEECHGPEATISLYIAKAEDLDEH 837 (1636)
T ss_pred cchHHHHHhccchhHHHHHHHHHhcch---------hHHHHHHHhccccHHHHHHHHHHhcCchhHHHHHHHhHHhHHhh
Confidence 455678889999999999999987521 12245578889999999887666543221112222222111112
Q ss_pred CCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH------HHHhhcCCCCCCCCchHHHHHHHHH
Q 045024 500 GHLSSSQVFGAIQQAIQRGPHYPESHNLYGLVCEARSDYQAAVVSYRLA------RYAISSSSGTVPNSHFQDISINLAR 573 (1173)
Q Consensus 500 g~~~~~~A~~~l~~al~~~P~~~~a~~~lg~i~~~~g~~~~A~~~~~kA------l~l~~~~pe~~~~~~~~~~~~~La~ 573 (1173)
|+ +.+|. .+|...|..+.|+..|++. +++.+..- ..+.......+|.
T Consensus 838 gk--f~eae---------------------qlyiti~~p~~aiqmydk~~~~ddmirlv~k~h----~d~l~dt~~~f~~ 890 (1636)
T KOG3616|consen 838 GK--FAEAE---------------------QLYITIGEPDKAIQMYDKHGLDDDMIRLVEKHH----GDHLHDTHKHFAK 890 (1636)
T ss_pred cc--hhhhh---------------------heeEEccCchHHHHHHHhhCcchHHHHHHHHhC----hhhhhHHHHHHHH
Confidence 22 11111 2333345555555555542 22222211 2233456677777
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 045024 574 SLSRAGNALDAVRECESLERQGMLDAEVLQVYAFSLWQLGKYDLALSMAR 623 (1173)
Q Consensus 574 ~~~~~g~~~eAi~~~~~~~~~~p~~~~~~~~la~a~~~~g~~~eA~~~~~ 623 (1173)
-|...|+...|.+.|-++- -+-.....|-..+-+++|....+
T Consensus 891 e~e~~g~lkaae~~flea~--------d~kaavnmyk~s~lw~dayriak 932 (1636)
T KOG3616|consen 891 ELEAEGDLKAAEEHFLEAG--------DFKAAVNMYKASELWEDAYRIAK 932 (1636)
T ss_pred HHHhccChhHHHHHHHhhh--------hHHHHHHHhhhhhhHHHHHHHHh
Confidence 7888888888877776652 11122344555566666654443
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.25 E-value=0.00021 Score=75.47 Aligned_cols=171 Identities=16% Similarity=0.101 Sum_probs=138.8
Q ss_pred CHHHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHH---
Q 045024 21 DPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQN---AVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVS--- 94 (1173)
Q Consensus 21 ~~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~---~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a--- 94 (1173)
.+..++.-|...++.|+ +++|+..|+.+....|.. ..+...++.++.+ .+++++|+...++-+.+.|.++.+
T Consensus 33 p~~~LY~~g~~~L~~gn-~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk-~~~y~~A~~~~drFi~lyP~~~n~dY~ 110 (254)
T COG4105 33 PASELYNEGLTELQKGN-YEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYK-NGEYDLALAYIDRFIRLYPTHPNADYA 110 (254)
T ss_pred CHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHh-cccHHHHHHHHHHHHHhCCCCCChhHH
Confidence 46789999999999988 999999999999988876 4688999999999 999999999999999999988764
Q ss_pred HHHHHHHHHHCC--------CHHHHHHHHHHHHhhCCCcH-----------------HHHHHHHHHHHHcCCHHHHHHHH
Q 045024 95 GEALCELLEHGG--------KESLEVVVCREASDKSPRAF-----------------WAFRRLGYLQLHHKKWSEAVQSL 149 (1173)
Q Consensus 95 ~~~La~~~~~~g--------~~~~A~~~~~~al~~~p~~~-----------------~a~~~la~~~~~~g~~~~A~~~l 149 (1173)
++..|..+...= -..+|...|+..+...|++. .--..+|..|.+.|.+..|+.-+
T Consensus 111 ~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~ 190 (254)
T COG4105 111 YYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRF 190 (254)
T ss_pred HHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHH
Confidence 666666664331 24578888888999999752 11235788999999999999999
Q ss_pred HHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 045024 150 QHAIRGYPTS---PHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTS 193 (1173)
Q Consensus 150 ~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 193 (1173)
+++++..|+. .+++..+..+|...|-.++|.+.-.-.-...|++
T Consensus 191 ~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~s 237 (254)
T COG4105 191 EEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYPDS 237 (254)
T ss_pred HHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCC
Confidence 9999987754 5678889999999999999987654433334444
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.24 E-value=0.0066 Score=71.15 Aligned_cols=135 Identities=13% Similarity=0.062 Sum_probs=76.7
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCH
Q 045024 63 LGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKW 142 (1173)
Q Consensus 63 lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~ 142 (1173)
.|.-+.. .|+++.|+..|-.+-. ...-........++.+|+.+++.+..... ....|-.++.-|...|+|
T Consensus 712 wg~hl~~-~~q~daainhfiea~~--------~~kaieaai~akew~kai~ildniqdqk~-~s~yy~~iadhyan~~df 781 (1636)
T KOG3616|consen 712 WGDHLEQ-IGQLDAAINHFIEANC--------LIKAIEAAIGAKEWKKAISILDNIQDQKT-ASGYYGEIADHYANKGDF 781 (1636)
T ss_pred HhHHHHH-HHhHHHHHHHHHHhhh--------HHHHHHHHhhhhhhhhhHhHHHHhhhhcc-ccccchHHHHHhccchhH
Confidence 4555566 7777777777655421 11222333445567777776665543322 223455677778888888
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHcCChHHHHHHH
Q 045024 143 SEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTS-IFPLLESGNIFLMLGNFRKGVEQF 217 (1173)
Q Consensus 143 ~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~a~~~la~~~~~~g~~~~A~~~~ 217 (1173)
+.|.+.|.++- ....-..+|.+.|++++|.+.-++... |.. ...+...+.-+-..|+|.+|.+.|
T Consensus 782 e~ae~lf~e~~--------~~~dai~my~k~~kw~da~kla~e~~~--~e~t~~~yiakaedldehgkf~eaeqly 847 (1636)
T KOG3616|consen 782 EIAEELFTEAD--------LFKDAIDMYGKAGKWEDAFKLAEECHG--PEATISLYIAKAEDLDEHGKFAEAEQLY 847 (1636)
T ss_pred HHHHHHHHhcc--------hhHHHHHHHhccccHHHHHHHHHHhcC--chhHHHHHHHhHHhHHhhcchhhhhhee
Confidence 88888887642 223345667778888887777666532 332 233444455555555555544443
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.23 E-value=0.00013 Score=72.20 Aligned_cols=158 Identities=15% Similarity=0.151 Sum_probs=126.7
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh-hCCCcHHHHHHHHHHHHHcCC
Q 045024 63 LGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASD-KSPRAFWAFRRLGYLQLHHKK 141 (1173)
Q Consensus 63 lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~-~~p~~~~a~~~la~~~~~~g~ 141 (1173)
++....+ .=|.+....-..+.++..|.. .-.+.||......|++.+|...|++++. +...++..+..++...+..++
T Consensus 62 ~~~a~~q-~ldP~R~~Rea~~~~~~ApTv-qnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~ 139 (251)
T COG4700 62 LLMALQQ-KLDPERHLREATEELAIAPTV-QNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQE 139 (251)
T ss_pred HHHHHHH-hcChhHHHHHHHHHHhhchhH-HHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhcc
Confidence 3344444 556666666666666666654 4477889999999999999999998864 355678888899999999999
Q ss_pred HHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHH
Q 045024 142 WSEAVQSLQHAIRGYP--TSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQL 219 (1173)
Q Consensus 142 ~~~A~~~l~~al~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~ 219 (1173)
+..|...+++..+.+| ..++....+|+++...|++.+|...|+.++...|+ +.+....+..+.++|+.++|...+..
T Consensus 140 ~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~ 218 (251)
T COG4700 140 FAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVA 218 (251)
T ss_pred HHHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHH
Confidence 9999999999998887 45777888999999999999999999999998876 56777888999999998888877766
Q ss_pred HHhh
Q 045024 220 ALKI 223 (1173)
Q Consensus 220 al~~ 223 (1173)
+.+.
T Consensus 219 v~d~ 222 (251)
T COG4700 219 VVDT 222 (251)
T ss_pred HHHH
Confidence 6553
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=98.23 E-value=2.3e-05 Score=74.63 Aligned_cols=94 Identities=19% Similarity=0.097 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCC---cHHHHHHH
Q 045024 59 AFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDD---SVSGEALCELLEHGGKESLEVVVCREASDKSPR---AFWAFRRL 132 (1173)
Q Consensus 59 a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~---~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~---~~~a~~~l 132 (1173)
+++.+|.++.. .|+.++|+..|++++...... ..++..+|..+...|++++|+..+++.+...|+ +......+
T Consensus 3 ~~~~~A~a~d~-~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~ 81 (120)
T PF12688_consen 3 ALYELAWAHDS-LGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFL 81 (120)
T ss_pred hHHHHHHHHHh-cCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHH
Confidence 44555555555 555555555555555543322 223444555555555555555555555444444 33444444
Q ss_pred HHHHHHcCCHHHHHHHHHHHH
Q 045024 133 GYLQLHHKKWSEAVQSLQHAI 153 (1173)
Q Consensus 133 a~~~~~~g~~~~A~~~l~~al 153 (1173)
+.++...|++++|+..+-.++
T Consensus 82 Al~L~~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 82 ALALYNLGRPKEALEWLLEAL 102 (120)
T ss_pred HHHHHHCCCHHHHHHHHHHHH
Confidence 444455555555554444433
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.22 E-value=0.00024 Score=70.23 Aligned_cols=144 Identities=16% Similarity=0.118 Sum_probs=94.3
Q ss_pred CHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 045024 107 KESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIR-GYPTSPHLWEALGLAYHRLGMFSAAIKSYGR 185 (1173)
Q Consensus 107 ~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~-~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 185 (1173)
|++....-..+.+...|.. .-.+.+|......|++.+|...|++++. +.-+++..+..+++..+..+++..|...+++
T Consensus 71 dP~R~~Rea~~~~~~ApTv-qnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~ 149 (251)
T COG4700 71 DPERHLREATEELAIAPTV-QNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLED 149 (251)
T ss_pred ChhHHHHHHHHHHhhchhH-HHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHH
Confidence 4444444455555555543 3345677777777777777777777765 3446667777777777777777777777777
Q ss_pred HHHhCCC--ChHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhhcHH
Q 045024 186 AIELDDT--SIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLASGLLGLAKQCINLGAFR 252 (1173)
Q Consensus 186 al~~~p~--~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~l~~~~~a~g~~~ 252 (1173)
..+.+|. .++....+|..+...|.+.+|...|+.++...|+ +.+....+..+..+|+..++...+.
T Consensus 150 l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~ 217 (251)
T COG4700 150 LMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYV 217 (251)
T ss_pred HhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHH
Confidence 7777665 4566677777777777777777777777777665 4455556666667776555544443
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=98.20 E-value=0.00015 Score=78.50 Aligned_cols=166 Identities=13% Similarity=0.100 Sum_probs=112.8
Q ss_pred HHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCH-----HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc------
Q 045024 57 AVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDS-----VSGEALCELLEHGGKESLEVVVCREASDKSPRA------ 125 (1173)
Q Consensus 57 ~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~-----~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~------ 125 (1173)
.+++..+++.+.. ..++.+++.+-...+.+....+ .+...++..+.-.+.++++++.|+.+++...++
T Consensus 83 ~ea~lnlar~~e~-l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LE 161 (518)
T KOG1941|consen 83 LEAYLNLARSNEK-LCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLE 161 (518)
T ss_pred HHHHHHHHHHHHH-HHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceee
Confidence 4777777777777 7777777777776666532222 346667777777777888888888777664332
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----CC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----
Q 045024 126 FWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYP----TS------PHLWEALGLAYHRLGMFSAAIKSYGRAIELD----- 190 (1173)
Q Consensus 126 ~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p----~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~----- 190 (1173)
-.++..+|..|....|+++|..+..++.++-. ++ ..+++.++..+..+|...+|.++.+++.++.
T Consensus 162 lqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gd 241 (518)
T KOG1941|consen 162 LQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGD 241 (518)
T ss_pred eehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCC
Confidence 24566777778888888888777777766532 11 2345667777777788888887777776652
Q ss_pred -CCChHHHHHHHHHHHHcCChHHHHHHHHHHHhh
Q 045024 191 -DTSIFPLLESGNIFLMLGNFRKGVEQFQLALKI 223 (1173)
Q Consensus 191 -p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~ 223 (1173)
+-......-+|.+|...|+.+.|..-|+.+...
T Consensus 242 ra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~ 275 (518)
T KOG1941|consen 242 RALQARCLLCFADIYRSRGDLERAFRRYEQAMGT 275 (518)
T ss_pred hHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHH
Confidence 113445566778888888888887777777654
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=98.19 E-value=3.2e-05 Score=73.58 Aligned_cols=95 Identities=21% Similarity=0.188 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHH
Q 045024 94 SGEALCELLEHGGKESLEVVVCREASDKSPRA---FWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPT---SPHLWEALG 167 (1173)
Q Consensus 94 a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~---~~~~~~~la 167 (1173)
+.+.+|.++...|+.++|+..|++++...... ..++..+|..+...|++++|+..+++.+...|+ +..+...++
T Consensus 3 ~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~A 82 (120)
T PF12688_consen 3 ALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLA 82 (120)
T ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHH
Confidence 45666666666677777777776666654332 445666666666666666666666666666665 555566666
Q ss_pred HHHHHcCCHHHHHHHHHHHHH
Q 045024 168 LAYHRLGMFSAAIKSYGRAIE 188 (1173)
Q Consensus 168 ~~~~~~g~~~~A~~~~~~al~ 188 (1173)
.++...|+.++|+..+-.++.
T Consensus 83 l~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 83 LALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHCCCHHHHHHHHHHHHH
Confidence 666666666666666655543
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.17 E-value=3.1e-06 Score=90.33 Aligned_cols=103 Identities=17% Similarity=0.113 Sum_probs=68.9
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcC
Q 045024 61 RYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHK 140 (1173)
Q Consensus 61 ~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g 140 (1173)
-..|.-|++ +|.|++|+.+|.+++..+|.++..+.+.+..|++...+..|...+..++.++.....+|.+.|..-..+|
T Consensus 101 KE~GN~yFK-QgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 101 KERGNTYFK-QGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG 179 (536)
T ss_pred HHhhhhhhh-ccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 445666666 6677777777777666666666666666666666666666666666666666666666666666666666
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHH
Q 045024 141 KWSEAVQSLQHAIRGYPTSPHLWE 164 (1173)
Q Consensus 141 ~~~~A~~~l~~al~~~p~~~~~~~ 164 (1173)
...+|.+.++.++++.|++.+..-
T Consensus 180 ~~~EAKkD~E~vL~LEP~~~ELkK 203 (536)
T KOG4648|consen 180 NNMEAKKDCETVLALEPKNIELKK 203 (536)
T ss_pred hHHHHHHhHHHHHhhCcccHHHHH
Confidence 666666666666666666554433
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=98.15 E-value=5.6e-06 Score=70.77 Aligned_cols=55 Identities=20% Similarity=0.280 Sum_probs=22.0
Q ss_pred cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCC
Q 045024 173 LGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSEN 227 (1173)
Q Consensus 173 ~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 227 (1173)
.|++++|+..|++++..+|++..+++.+|.+|...|++++|...+++++..+|++
T Consensus 4 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~ 58 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDN 58 (68)
T ss_dssp TTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTH
T ss_pred ccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCH
Confidence 3344444444444444444444444444444444444444444444444444433
|
... |
| >KOG2471 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.15 E-value=0.0042 Score=70.14 Aligned_cols=318 Identities=14% Similarity=0.080 Sum_probs=186.8
Q ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHhhhhhhhhhHHHHHHHHHHHhhcCC--------CHHHHHHHH
Q 045024 323 AAISSKSSYQRALYLAPWQANIYTDIAITSDLIYSLNEAYGHYQSAWHVSEKMALGALLLEGD--------NCQFWVTLG 394 (1173)
Q Consensus 323 ~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~A~k~~~~al~~~p~--------~~~~~~~Lg 394 (1173)
....+....+.++....+.+......+..++..|++.+|.+.+. ..-+...|. ...+|+++|
T Consensus 221 ~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~----------~sni~~~~g~~~T~q~~~cif~NNlG 290 (696)
T KOG2471|consen 221 NLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLL----------VSNIHKEAGGTITPQLSSCIFNNNLG 290 (696)
T ss_pred HHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHH----------hcccccccCccccchhhhheeecCcc
Confidence 34456666677777777888888889999999999998854322 122333333 356789999
Q ss_pred HhhcccH---HHHHHHHHHHh---------cC---------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChh
Q 045024 395 CLSNYNG---LKQHALIRGLQ---------LD---------VSLADAWAHIGKLYGEVGEKKLARQAFDSARSIDPSLAL 453 (1173)
Q Consensus 395 ~~~~~~~---~a~~a~~kal~---------l~---------p~~~~a~~~Lg~~y~~~g~~e~A~~~f~~al~~~P~~~~ 453 (1173)
.+++..+ .+...|.++++ +. .+..++.++.|..|...|++-.|.++|.++....-.+|.
T Consensus 291 cIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPr 370 (696)
T KOG2471|consen 291 CIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPR 370 (696)
T ss_pred eEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcH
Confidence 9988544 44566788874 11 135689999999999999999999999999999999999
Q ss_pred HHHHhHHHHHH---hcCCHHHHHHHHHH--HHh--------------c---------CCchHHHHHHHHHHHHhCCCChH
Q 045024 454 PWAGMSADVQA---SESLVDDAFESCLR--AVQ--------------I---------LPLAEFQIGLAKLAKLSGHLSSS 505 (1173)
Q Consensus 454 a~~~l~a~~~~---~~g~~~eA~~~~~~--al~--------------~---------~p~~~~~~~la~l~~~~g~~~~~ 505 (1173)
.|+. ++++.. +.|-.++......+ ... . +..|.....++.+..+.+-.-..
T Consensus 371 lWLR-lAEcCima~~~~l~ee~~~s~s~~~i~~~vig~g~rr~~m~~~nt~~~~~qS~~~p~~slefA~vCLrnal~Ll~ 449 (696)
T KOG2471|consen 371 LWLR-LAECCIMALQKGLLEEGNSSLSRSEIRVHVIGKGNRRQLMIEENTYVELAQSNQLPKLSLEFARVCLRNALYLLN 449 (696)
T ss_pred HHHH-HHHHHHHHhhhhhhhhccCCcccccceeeeecccchhheeecccceeccccccCCCccccHHHHHHHHhhhhcCc
Confidence 9999 554543 22222322222211 000 0 01122223333333222211000
Q ss_pred H--HH-HHHHH-----------------------------HHHhCCCCH-----------HHHHHHHHHHHHcCCHHHHH
Q 045024 506 Q--VF-GAIQQ-----------------------------AIQRGPHYP-----------ESHNLYGLVCEARSDYQAAV 542 (1173)
Q Consensus 506 ~--A~-~~l~~-----------------------------al~~~P~~~-----------~a~~~lg~i~~~~g~~~~A~ 542 (1173)
+ -. ..+.- .+..-|+.| ..+...+.+..+.||.-.|.
T Consensus 450 e~q~~~~~~~~a~ns~~~g~~~e~~e~~~t~~Sk~h~gd~~~~~p~ssp~~~e~leNm~~ai~A~~ayV~L~Lgd~i~AL 529 (696)
T KOG2471|consen 450 EKQDLGSILSVAMNSTKEGSSSEHEEGNTTTDSKEHKGDMSQEIPQSSPSAFEDLENMRQAIFANMAYVELELGDPIKAL 529 (696)
T ss_pred hhhcchhhhhhhccccccCCCCcCCCCCCCcchhcCCCCCCccCCCCCcchHHHHHHHHHHHHHHHHHHHHHhcChhhHH
Confidence 0 00 00000 000001111 13345677778899999999
Q ss_pred HHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHH-----HhcCCHHHHHHHHHHHHHc-----------------------
Q 045024 543 VSYRLARYAISSSSGTVPNSHFQDISINLARSL-----SRAGNALDAVRECESLERQ----------------------- 594 (1173)
Q Consensus 543 ~~~~kAl~l~~~~pe~~~~~~~~~~~~~La~~~-----~~~g~~~eAi~~~~~~~~~----------------------- 594 (1173)
..-++.+... +...++.-||.+| +.+.+..+|+..+.-..--
T Consensus 530 ~~a~kLLq~~----------~lS~~~kfLGHiYAaEAL~lldr~seA~~HL~p~~~~~~~f~~~~n~~Df~~~~~~~e~l 599 (696)
T KOG2471|consen 530 SAATKLLQLA----------DLSKIYKFLGHIYAAEALCLLDRPSEAGAHLSPYLLGQDDFKLPYNQEDFDQWWKHTETL 599 (696)
T ss_pred HHHHHHHhhh----------hhhhHHHHHHHHHHHHHHHHcCChhhhhhccChhhcCCcccccccchhhhhhhhcccccc
Confidence 9888876542 2233555555554 5577888888766542100
Q ss_pred C----------CCCH-----HHHHHHHHHHHHcCChHHHHHHHHHHhhhccccccchhhhhHHHHHHHHHHhcChhhhhH
Q 045024 595 G----------MLDA-----EVLQVYAFSLWQLGKYDLALSMARNLASSVSAMEQSSAAASVSFICRLLYHISGLDSTIN 659 (1173)
Q Consensus 595 ~----------p~~~-----~~~~~la~a~~~~g~~~eA~~~~~~aL~~~p~~~~~~~~~~~~~la~l~~~~g~~~~A~~ 659 (1173)
+ |.++ ..++++|.++.-.|++|+|...+..+....+. ...+.+...-.-+-...|....|..
T Consensus 600 ~~s~~r~~q~~~~sv~~Ar~v~~~nLa~a~alq~~~dqAk~ll~~aatl~hs---~v~~~A~~lavyidL~~G~~q~al~ 676 (696)
T KOG2471|consen 600 DPSTGRTRQSVFLSVEEARGVLFANLAAALALQGHHDQAKSLLTHAATLLHS---LVNVQATVLAVYIDLMLGRSQDALA 676 (696)
T ss_pred CCcCCCCcccccCCHHHHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhhc---cccHHHHHHHHHHHHhcCCCcchHH
Confidence 0 1111 13377888999999999999988877765541 1223344444444556677777765
Q ss_pred HhhhC
Q 045024 660 SILKM 664 (1173)
Q Consensus 660 ~l~~~ 664 (1173)
.|...
T Consensus 677 ~lk~~ 681 (696)
T KOG2471|consen 677 RLKQC 681 (696)
T ss_pred HHHhc
Confidence 55443
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.15 E-value=3e-05 Score=77.28 Aligned_cols=110 Identities=19% Similarity=0.300 Sum_probs=97.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHH
Q 045024 128 AFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTS-----PHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGN 202 (1173)
Q Consensus 128 a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~ 202 (1173)
.+-.-|.-++..|+|++|..-|..++.+.|.. ...+.+.|.+.++++.++.|+..+.++++++|.+..++.+.|.
T Consensus 97 ~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAe 176 (271)
T KOG4234|consen 97 SLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAE 176 (271)
T ss_pred HHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHH
Confidence 34456888899999999999999999998864 3467788999999999999999999999999999999999999
Q ss_pred HHHHcCChHHHHHHHHHHHhhcCCCHHHHHHHHHH
Q 045024 203 IFLMLGNFRKGVEQFQLALKISSENVSAHYGLASG 237 (1173)
Q Consensus 203 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~ 237 (1173)
+|.++..|++|++.|.++++.+|....+......+
T Consensus 177 ayek~ek~eealeDyKki~E~dPs~~ear~~i~rl 211 (271)
T KOG4234|consen 177 AYEKMEKYEEALEDYKKILESDPSRREAREAIARL 211 (271)
T ss_pred HHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHhc
Confidence 99999999999999999999999987776555443
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=98.14 E-value=4.4e-05 Score=81.38 Aligned_cols=103 Identities=23% Similarity=0.250 Sum_probs=95.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---hHHHHHHHH
Q 045024 129 FRRLGYLQLHHKKWSEAVQSLQHAIRGYPTS---PHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTS---IFPLLESGN 202 (1173)
Q Consensus 129 ~~~la~~~~~~g~~~~A~~~l~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~la~ 202 (1173)
.+..|.-++..|+|..|...|..-++..|++ +.+++.||.+++.+|++++|...|..+.+..|++ +++++.+|.
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 7888899999999999999999999999865 6799999999999999999999999999988774 688999999
Q ss_pred HHHHcCChHHHHHHHHHHHhhcCCCHHHH
Q 045024 203 IFLMLGNFRKGVEQFQLALKISSENVSAH 231 (1173)
Q Consensus 203 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~ 231 (1173)
+...+|+.++|...|+++++..|+...+.
T Consensus 224 ~~~~l~~~d~A~atl~qv~k~YP~t~aA~ 252 (262)
T COG1729 224 SLGRLGNTDEACATLQQVIKRYPGTDAAK 252 (262)
T ss_pred HHHHhcCHHHHHHHHHHHHHHCCCCHHHH
Confidence 99999999999999999999999987664
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=98.13 E-value=7.8e-06 Score=69.89 Aligned_cols=58 Identities=16% Similarity=0.119 Sum_probs=24.7
Q ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHH
Q 045024 71 SIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWA 128 (1173)
Q Consensus 71 ~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a 128 (1173)
.|++++|+..|++++..+|++..+++.+|.++...|++++|...+++++..+|+++..
T Consensus 4 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~ 61 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEY 61 (68)
T ss_dssp TTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHH
T ss_pred ccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHH
Confidence 3444444444444444444444444444444444444444444444444444444333
|
... |
| >KOG2300 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.12 E-value=0.033 Score=63.30 Aligned_cols=197 Identities=13% Similarity=0.007 Sum_probs=115.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChh--------HHH-HhHHHHHHhcCCHHHHHHHHHHHHhcCCchH---
Q 045024 420 AWAHIGKLYGEVGEKKLARQAFDSARSIDPSLAL--------PWA-GMSADVQASESLVDDAFESCLRAVQILPLAE--- 487 (1173)
Q Consensus 420 a~~~Lg~~y~~~g~~e~A~~~f~~al~~~P~~~~--------a~~-~l~a~~~~~~g~~~eA~~~~~~al~~~p~~~--- 487 (1173)
.+-++..+-.-.|++.+|++....+.+..-..+. +.+ .++|.-....+.++.|...|..+.+.....+
T Consensus 325 ~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a 404 (629)
T KOG2300|consen 325 LLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQA 404 (629)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHH
Confidence 3445566666778888888777776664222221 111 1134333356778888888887777644322
Q ss_pred -HHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCC----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCC
Q 045024 488 -FQIGLAKLAKLSGHLSSSQVFGAIQQAIQRGPHY----------PESHNLYGLVCEARSDYQAAVVSYRLARYAISSSS 556 (1173)
Q Consensus 488 -~~~~la~l~~~~g~~~~~~A~~~l~~al~~~P~~----------~~a~~~lg~i~~~~g~~~~A~~~~~kAl~l~~~~p 556 (1173)
....++..+...++ +...++-.-...|.+ ..+++..|...+.++++.+|.....+.++..+.
T Consensus 405 ~~nlnlAi~YL~~~~-----~ed~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmana-- 477 (629)
T KOG2300|consen 405 FCNLNLAISYLRIGD-----AEDLYKALDLIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANA-- 477 (629)
T ss_pred HHHHhHHHHHHHhcc-----HHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcch--
Confidence 23344555555554 222222222234431 235677888888999999999999988766422
Q ss_pred CCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCCHHHH---HHHHHHHHHcCC--hHHHHHHHHH
Q 045024 557 GTVPNSHFQDISINLARSLSRAGNALDAVRECESLERQ---GMLDAEVL---QVYAFSLWQLGK--YDLALSMARN 624 (1173)
Q Consensus 557 e~~~~~~~~~~~~~La~~~~~~g~~~eAi~~~~~~~~~---~p~~~~~~---~~la~a~~~~g~--~~eA~~~~~~ 624 (1173)
++ ..+-.+..+.-|+.+....|+..++.+...-+... -|+-+.-+ -.+-.+|...|+ .++.-+.|..
T Consensus 478 ed-~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi~Di~vqLws~si~~~L~~a~g~~~~~~e~e~~~~ 552 (629)
T KOG2300|consen 478 ED-LNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKIPDIPVQLWSSSILTDLYQALGEKGNEMENEAFRK 552 (629)
T ss_pred hh-HHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHhcCCCchHHHHHHHHHHHHHHHhCcchhhHHHHHHHH
Confidence 11 12333456667888889999998888877766543 34433322 334566677777 5555555543
|
|
| >KOG2471 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.12 E-value=0.00039 Score=78.12 Aligned_cols=218 Identities=14% Similarity=0.071 Sum_probs=153.0
Q ss_pred HHHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCC----CH-HHHHHHHHHHHHccCCHHHHHHHHHH---HHhh---CCC
Q 045024 22 PSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQ----NA-VAFRYLGHYYTRFSIDTQRAIKCYQR---AVSL---SPD 90 (1173)
Q Consensus 22 ~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~----~~-~a~~~lg~~~~~~~g~~~eA~~~~~~---al~~---~p~ 90 (1173)
...+++.|.+++.... +..|++.....+..-.. .+ ..-...-..+.. ...-++|+.++.- .+.. .|.
T Consensus 100 t~~~yn~aVi~yh~~~-~g~a~~~~~~lv~r~e~le~~~aa~v~~l~~~l~~~-t~q~e~al~~l~vL~~~~~~~~~~~~ 177 (696)
T KOG2471|consen 100 TVMDYNFAVIFYHHEE-NGSAMQLSSNLVSRTESLESSSAASVTLLSDLLAAE-TSQCEEALDYLNVLAEIEAEKRMKLV 177 (696)
T ss_pred hHHhhhhheeeeeHhh-cchHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhhcccc
Confidence 5678888999888876 78888876665532211 11 122233334444 5555666655432 2211 010
Q ss_pred --C-------------------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHH
Q 045024 91 --D-------------------------SVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWS 143 (1173)
Q Consensus 91 --~-------------------------~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~ 143 (1173)
+ ..+.......+....+...+..-.+.+.....+.+.+.......++..|++.
T Consensus 178 gn~~~~nn~~kt~s~~aAe~s~~~a~~k~~~~~ykVr~llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~ 257 (696)
T KOG2471|consen 178 GNHIPANNLLKTLSPSAAERSFSTADLKLELQLYKVRFLLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHP 257 (696)
T ss_pred ccccchhhhcccCCcchhcccchhhccchhhhHhhHHHHHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchH
Confidence 0 0123344455666667777777777777777788889999999999999999
Q ss_pred HHHHHHHHH-HHhCCC--------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---------CC---------CChHH
Q 045024 144 EAVQSLQHA-IRGYPT--------SPHLWEALGLAYHRLGMFSAAIKSYGRAIEL---------DD---------TSIFP 196 (1173)
Q Consensus 144 ~A~~~l~~a-l~~~p~--------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---------~p---------~~~~a 196 (1173)
+|.+.+... +...|. ....|.++|.++++.|.|..+...|.++++. .| ...+.
T Consensus 258 kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~ei 337 (696)
T KOG2471|consen 258 KAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEI 337 (696)
T ss_pred HHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhh
Confidence 999988653 122222 2335689999999999999999999999961 11 24678
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHH
Q 045024 197 LLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLASGLLGL 241 (1173)
Q Consensus 197 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~l 241 (1173)
+++.|..|...|++-.|.++|.++......+|..|..++.+.+..
T Consensus 338 lYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCima 382 (696)
T KOG2471|consen 338 LYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIMA 382 (696)
T ss_pred HHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 899999999999999999999999999999999999999887654
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.11 E-value=1.4e-05 Score=69.46 Aligned_cols=58 Identities=28% Similarity=0.525 Sum_probs=23.1
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 045024 136 QLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTS 193 (1173)
Q Consensus 136 ~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 193 (1173)
|...+++++|+.++++++..+|+++..+..+|.++...|++++|+..++++++..|++
T Consensus 5 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~ 62 (73)
T PF13371_consen 5 YLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDD 62 (73)
T ss_pred HHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCc
Confidence 3333344444444444444444333333334444444444444444444444333333
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.08 E-value=1.6e-05 Score=69.05 Aligned_cols=68 Identities=24% Similarity=0.354 Sum_probs=63.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCHHHHHH
Q 045024 166 LGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYG 233 (1173)
Q Consensus 166 la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~ 233 (1173)
|..+|...+++++|++.+++++..+|+++..+..+|.++...|++++|+..|+++++..|+++.+...
T Consensus 1 l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~ 68 (73)
T PF13371_consen 1 LKQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARAL 68 (73)
T ss_pred CHHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHH
Confidence 35789999999999999999999999999999999999999999999999999999999998876543
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=98.07 E-value=0.083 Score=66.11 Aligned_cols=471 Identities=16% Similarity=0.054 Sum_probs=246.8
Q ss_pred HHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCC--CHH----HHHHHHHHHHHCCCH
Q 045024 39 KEKAAEHFVIAAKLNPQ----NAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPD--DSV----SGEALCELLEHGGKE 108 (1173)
Q Consensus 39 ~~~A~~~~~~al~~~p~----~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~--~~~----a~~~La~~~~~~g~~ 108 (1173)
...|+.+++-+++..+- .+.+++.+|.++.....++++|..++++++.+... ..+ ..+.++.++.+.+..
T Consensus 37 I~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~ 116 (608)
T PF10345_consen 37 IATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPK 116 (608)
T ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHH
Confidence 35678888877742222 24678889999986589999999999999877643 332 245667888877776
Q ss_pred HHHHHHHHHHHhhCCC---cHH--HHHHH-HHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHH----HHHHHHHHHcCCH
Q 045024 109 SLEVVVCREASDKSPR---AFW--AFRRL-GYLQLHHKKWSEAVQSLQHAIRGY--PTSPHLW----EALGLAYHRLGMF 176 (1173)
Q Consensus 109 ~~A~~~~~~al~~~p~---~~~--a~~~l-a~~~~~~g~~~~A~~~l~~al~~~--p~~~~~~----~~la~~~~~~g~~ 176 (1173)
. |...+++.++...+ ..+ .+..+ .......+++..|++.++...... +.++.+. ...+.+....+..
T Consensus 117 ~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~ 195 (608)
T PF10345_consen 117 A-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSP 195 (608)
T ss_pred H-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCc
Confidence 6 99999988776444 222 22222 333333479999999999887765 3444432 3346666777888
Q ss_pred HHHHHHHHHHHHhC------CC----ChHHHHHHHHH--HHHcCChHHHHHHHHHH---HhhcCCCH-------------
Q 045024 177 SAAIKSYGRAIELD------DT----SIFPLLESGNI--FLMLGNFRKGVEQFQLA---LKISSENV------------- 228 (1173)
Q Consensus 177 ~~A~~~~~~al~~~------p~----~~~a~~~la~~--~~~~g~~~~A~~~~~~a---l~~~p~~~------------- 228 (1173)
+++++..+++.... |. ...++..+-.+ +...|+++.+...+++. ++...+.+
T Consensus 196 ~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l 275 (608)
T PF10345_consen 196 DDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPL 275 (608)
T ss_pred hhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEe
Confidence 88888888774422 11 23344444333 45567766666554433 22111100
Q ss_pred -------------------HHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHh-hhcCChHHHHHHhchHHHH
Q 045024 229 -------------------SAHYGLASGLLGLAKQCINLGAFRWGASLLEDACKVAEANT-RLAGNMSCIWKLHGDIQLT 288 (1173)
Q Consensus 229 -------------------~a~~~la~~~~~l~~~~~a~g~~~~A~~~l~~Al~~~~~~~-~~~~~~~~~~~~~g~~~~~ 288 (1173)
+-....+.+|.-.|-.....+..+++..+++++++...+.. .........
T Consensus 276 ~~~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~s---------- 345 (608)
T PF10345_consen 276 NIGEGSSNSGGTPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSES---------- 345 (608)
T ss_pred ecccccccCCCceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcC----------
Confidence 00112334444445555555666688888888888776654 000000000
Q ss_pred HhhccchhhhhhchhhhhhhhhhhhHhhHhhhhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHhhhhhhhh
Q 045024 289 YAKCFPWAEERQSLEFDVETFSASIVSWKTTCLMAAISSKSSYQRALYLAPWQANIYTDIAITSDLIYSLNEAYGHYQSA 368 (1173)
Q Consensus 289 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~ 368 (1173)
... ..+-.. ..+.+. .......+......+++.++......
T Consensus 346 -----------------l~~---------------~~~~~~-~~~~l~-----~~~~~y~~~~~~~~~~~~~a~~~l~~- 386 (608)
T PF10345_consen 346 -----------------LSE---------------ASERIQ-WLRYLQ-----CYLLFYQIWCNFIRGDWSKATQELEF- 386 (608)
T ss_pred -----------------HHH---------------HHHhHH-HHHHHH-----HHHHHHHHHHHHHCcCHHHHHHHHHH-
Confidence 000 000000 000000 11223333333334444333221110
Q ss_pred hHHHHHHHHHHHhhcCCCHHHHHHHHHhhcccHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHH------
Q 045024 369 WHVSEKMALGALLLEGDNCQFWVTLGCLSNYNGLKQHALIRGLQLDVSLADAWAHIGKLYGEVGEKKLARQAFD------ 442 (1173)
Q Consensus 369 ~~~A~k~~~~al~~~p~~~~~~~~Lg~~~~~~~~a~~a~~kal~l~p~~~~a~~~Lg~~y~~~g~~e~A~~~f~------ 442 (1173)
........|.. -...-.+.+++..|..+...|+.+.|...|.
T Consensus 387 -------~~~~~~~~~~~-------------------------~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~ 434 (608)
T PF10345_consen 387 -------MRQLCQRSPSK-------------------------LYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLL 434 (608)
T ss_pred -------HHHHHhcCccc-------------------------hhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhh
Confidence 00000001100 0012257788999999999999999999998
Q ss_pred --HHHhhCCCChhHHHHh--HHHHHHhcCCHHH----HHHHHHHHH---hcCCchHHHHHHHHHHHH---hCCCChHHHH
Q 045024 443 --SARSIDPSLALPWAGM--SADVQASESLVDD----AFESCLRAV---QILPLAEFQIGLAKLAKL---SGHLSSSQVF 508 (1173)
Q Consensus 443 --~al~~~P~~~~a~~~l--~a~~~~~~g~~~e----A~~~~~~al---~~~p~~~~~~~la~l~~~---~g~~~~~~A~ 508 (1173)
.+....+.+....+.. ...++...+...+ ..+.++..- ...|..........+... .......++.
T Consensus 435 ~~~~~~~~~~~El~ila~LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k 514 (608)
T PF10345_consen 435 CEAANRKSKFRELYILAALNLAIILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAK 514 (608)
T ss_pred hhhhccCCcchHHHHHHHHHHHHHhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHH
Confidence 4444444443222221 2334444443222 333333221 122222222222222111 1222334666
Q ss_pred HHHHHHHHhC-C---C---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHHHhcCCH
Q 045024 509 GAIQQAIQRG-P---H---YPESHNLYGLVCEARSDYQAAVVSYRLARYAISSSSGTVPNSHFQDISINLARSLSRAGNA 581 (1173)
Q Consensus 509 ~~l~~al~~~-P---~---~~~a~~~lg~i~~~~g~~~~A~~~~~kAl~l~~~~pe~~~~~~~~~~~~~La~~~~~~g~~ 581 (1173)
..+...++.. . + -..++..++..+. .|+..+......++..+....|+....-....+-.-+...+...|+.
T Consensus 515 ~~l~~~L~~~~~~~~n~~l~~~~L~lm~~~lf-~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~ 593 (608)
T PF10345_consen 515 RHLQEALKMANNKLGNSQLLAILLNLMGHRLF-EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDR 593 (608)
T ss_pred HHHHHHHHHHHHhhccchHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcH
Confidence 6666666543 1 1 2234566777777 79999988888887766555433221000111222356667888999
Q ss_pred HHHHHHHHHHH
Q 045024 582 LDAVRECESLE 592 (1173)
Q Consensus 582 ~eAi~~~~~~~ 592 (1173)
++|.....+..
T Consensus 594 ~ka~~~~~~~~ 604 (608)
T PF10345_consen 594 DKAEEARQQLD 604 (608)
T ss_pred HHHHHHHHHHH
Confidence 99988777653
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >KOG2300 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.07 E-value=0.042 Score=62.45 Aligned_cols=463 Identities=14% Similarity=0.022 Sum_probs=249.5
Q ss_pred HHHHHHHHHHHHcc--CcHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCCHHHHHHHHHHHHhhC---CCC---
Q 045024 23 SLHLDLGLHLWENS--ESKEKAAEHFVIAAKLNPQN---AVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLS---PDD--- 91 (1173)
Q Consensus 23 ~~~~~lg~~~~~~~--~~~~~A~~~~~~al~~~p~~---~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~---p~~--- 91 (1173)
.++..++..+...+ + ...++++++......|.+ +..+..+|.+++.+..+++.|...++++..+. |+.
T Consensus 8 ~aLlGlAe~~rt~~PPk-Ikk~IkClqA~~~~~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydv 86 (629)
T KOG2300|consen 8 EALLGLAEHFRTSGPPK-IKKCIKCLQAIFQFQISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDV 86 (629)
T ss_pred HHHHHHHHHHhhcCChh-HHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhh
Confidence 45566666665554 4 688999998888777664 46778889888887899999999999997654 333
Q ss_pred -HHHHHHHHHHHHHCC-CHHHHHHHHHHHHhhCCCcH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCC---HH
Q 045024 92 -SVSGEALCELLEHGG-KESLEVVVCREASDKSPRAF----WAFRRLGYLQLHHKKWSEAVQSLQHAIRG-YPTS---PH 161 (1173)
Q Consensus 92 -~~a~~~La~~~~~~g-~~~~A~~~~~~al~~~p~~~----~a~~~la~~~~~~g~~~~A~~~l~~al~~-~p~~---~~ 161 (1173)
.++...|+.+|.... .+..+...+++++++....| ...+.++.++.-..|+..|++.+.-.... ++.. ..
T Consensus 87 Kf~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p~wsckllfQLaql~~idkD~~sA~elLavga~sAd~~~~~ylr 166 (629)
T KOG2300|consen 87 KFQAASLLAHLHHQLAQSFPPAKALLRKAIELSQSVPYWSCKLLFQLAQLHIIDKDFPSALELLAVGAESADHICFPYLR 166 (629)
T ss_pred hhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhhhccchhHHHHHhccccccchhhhHHHH
Confidence 234677888887766 78889999999999877654 34567888888889999998885432221 1111 11
Q ss_pred HHH--HHHHHHHHcCCH---HHHHHHHHHHHHhCCCCh-------HHHHHHHH-HHHHcCChHHHHHHHHHH---Hh-hc
Q 045024 162 LWE--ALGLAYHRLGMF---SAAIKSYGRAIELDDTSI-------FPLLESGN-IFLMLGNFRKGVEQFQLA---LK-IS 224 (1173)
Q Consensus 162 ~~~--~la~~~~~~g~~---~~A~~~~~~al~~~p~~~-------~a~~~la~-~~~~~g~~~~A~~~~~~a---l~-~~ 224 (1173)
..+ ..+.++....+. +.+.....+..+....++ ..+..+-. .|...|+...+...+++. +. +.
T Consensus 167 ~~ftls~~~ll~me~d~~dV~~ll~~~~qi~~n~~sdk~~~E~LkvFyl~lql~yy~~~gq~rt~k~~lkQLQ~siqtis 246 (629)
T KOG2300|consen 167 MLFTLSMLMLLIMERDDYDVEKLLQRCGQIWQNISSDKTQKEMLKVFYLVLQLSYYLLPGQVRTVKPALKQLQDSIQTIS 246 (629)
T ss_pred HHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHHhccC
Confidence 111 223333333333 344444444444333222 11222222 244567776666555543 22 11
Q ss_pred CC-----------C-HH--HHH----HHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHhhhcCChHHHHHHhchHH
Q 045024 225 SE-----------N-VS--AHY----GLASGLLGLAKQCINLGAFRWGASLLEDACKVAEANTRLAGNMSCIWKLHGDIQ 286 (1173)
Q Consensus 225 p~-----------~-~~--a~~----~la~~~~~l~~~~~a~g~~~~A~~~l~~Al~~~~~~~~~~~~~~~~~~~~g~~~ 286 (1173)
+. + +. .|. .-+.++...-......|.++++..+-++++....+..+...... +......+.
T Consensus 247 t~~~~h~e~ilgsps~~l~~wlpkeqicaLV~l~tv~hsm~~gy~~~~~K~tDe~i~q~eklkq~d~~sr-ilsm~km~~ 325 (629)
T KOG2300|consen 247 TSSRGHDEKILGSPSPILFEWLPKEQICALVYLVTVIHSMPAGYFKKAQKYTDEAIKQTEKLKQADLMSR-ILSMFKMIL 325 (629)
T ss_pred CCCCCccccccCCCChHHHhhccHhhhHhhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHhhcccccchhH-HHHHHHHHH
Confidence 21 1 00 111 11233333333334567788888888888877665544332111 111111111
Q ss_pred HHHhhccchhhhhhchhhhhhhhhhhhHhhHhhhhHHHHHHHHHHHHHH---hcCCCCH-------HHHHHHHHHHHHHh
Q 045024 287 LTYAKCFPWAEERQSLEFDVETFSASIVSWKTTCLMAAISSKSSYQRAL---YLAPWQA-------NIYTDIAITSDLIY 356 (1173)
Q Consensus 287 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al---~l~p~~~-------~~~~~la~~~~~~g 356 (1173)
.... . .-..-.+++.+|++....+. ...|... .+...+|......+
T Consensus 326 LE~i-----------------------v-~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~ 381 (629)
T KOG2300|consen 326 LEHI-----------------------V-MCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVN 381 (629)
T ss_pred HHHH-----------------------H-HHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcc
Confidence 0000 0 00011122334444333333 3334321 22222332222233
Q ss_pred hHHHhhhhhhhhhHHHHHHHHHHHhhcCCCHHHHHHHHHhhcccHHHHHHHHHHHhcCC-C--cHHHHHHHHHHHHHcCC
Q 045024 357 SLNEAYGHYQSAWHVSEKMALGALLLEGDNCQFWVTLGCLSNYNGLKQHALIRGLQLDV-S--LADAWAHIGKLYGEVGE 433 (1173)
Q Consensus 357 ~~~eA~~~~~~~~~~A~k~~~~al~~~p~~~~~~~~Lg~~~~~~~~a~~a~~kal~l~p-~--~~~a~~~Lg~~y~~~g~ 433 (1173)
.++.| ...|..+.+... . .+....+++..|.+.|+
T Consensus 382 ~~enA------------------------------------------e~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~ 419 (629)
T KOG2300|consen 382 CYENA------------------------------------------EFHFIEATKLTESIDLQAFCNLNLAISYLRIGD 419 (629)
T ss_pred hHHHH------------------------------------------HHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhcc
Confidence 33333 223333332211 1 23445678999999877
Q ss_pred HHHHHHHHHHHHhhCCCCh----------hHHHHhHHHHHHhcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCCC
Q 045024 434 KKLARQAFDSARSIDPSLA----------LPWAGMSADVQASESLVDDAFESCLRAVQILPLAEFQIGLAKLAKLSGHLS 503 (1173)
Q Consensus 434 ~e~A~~~f~~al~~~P~~~----------~a~~~l~a~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~la~l~~~~g~~~ 503 (1173)
-+.--+.++. +.|.+. ..++- .|......+++.||...+++.++... .+-...+
T Consensus 420 ~ed~y~~ld~---i~p~nt~s~ssq~l~a~~~~v-~glfaf~qn~lnEaK~~l~e~Lkman-aed~~rL----------- 483 (629)
T KOG2300|consen 420 AEDLYKALDL---IGPLNTNSLSSQRLEASILYV-YGLFAFKQNDLNEAKRFLRETLKMAN-AEDLNRL----------- 483 (629)
T ss_pred HHHHHHHHHh---cCCCCCCcchHHHHHHHHHHH-HHHHHHHhccHHHHHHHHHHHHhhcc-hhhHHHH-----------
Confidence 6654444443 455431 12222 23344578999999999888887642 1111111
Q ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHHHhcCC--H
Q 045024 504 SSQVFGAIQQAIQRGPHYPESHNLYGLVCEARSDYQAAVVSYRLARYAISSSSGTVPNSHFQDISINLARSLSRAGN--A 581 (1173)
Q Consensus 504 ~~~A~~~l~~al~~~P~~~~a~~~lg~i~~~~g~~~~A~~~~~kAl~l~~~~pe~~~~~~~~~~~~~La~~~~~~g~--~ 581 (1173)
..-.+..+|.+....|+..++.+..+-++++....|+-+. ..-...-+-.++...|+ .
T Consensus 484 -----------------~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi~Di~v---qLws~si~~~L~~a~g~~~~ 543 (629)
T KOG2300|consen 484 -----------------TACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKIPDIPV---QLWSSSILTDLYQALGEKGN 543 (629)
T ss_pred -----------------HHHHHHHHHHHHHHhcchHHHHhccchHHHHHhcCCCchH---HHHHHHHHHHHHHHhCcchh
Confidence 1235578899999999999999999999888777665322 21122234445556666 4
Q ss_pred HHHHHHHH
Q 045024 582 LDAVRECE 589 (1173)
Q Consensus 582 ~eAi~~~~ 589 (1173)
++.-+.|.
T Consensus 544 ~~e~e~~~ 551 (629)
T KOG2300|consen 544 EMENEAFR 551 (629)
T ss_pred hHHHHHHH
Confidence 44444443
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.02 Score=63.36 Aligned_cols=294 Identities=15% Similarity=0.019 Sum_probs=183.9
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCCCc--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcC
Q 045024 98 LCELLEHGGKESLEVVVCREASDKSPRA--FWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTS-PHLWEALGLAYHRLG 174 (1173)
Q Consensus 98 La~~~~~~g~~~~A~~~~~~al~~~p~~--~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~-~~~~~~la~~~~~~g 174 (1173)
-|.+..-.|+-..|.+.-.+.-++-..+ +-++..-+..-.-.|+++.|.+-|+.++.. |.. .-.+-.|-.--.+.|
T Consensus 90 tGliAagAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d-PEtRllGLRgLyleAqr~G 168 (531)
T COG3898 90 TGLIAAGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD-PETRLLGLRGLYLEAQRLG 168 (531)
T ss_pred hhhhhhccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC-hHHHHHhHHHHHHHHHhcc
Confidence 3445556788888888888876544333 444555566777889999999999887642 321 111111222224689
Q ss_pred CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCHH-HHHHHHHHHHHHHHHHHHhhcHHH
Q 045024 175 MFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVS-AHYGLASGLLGLAKQCINLGAFRW 253 (1173)
Q Consensus 175 ~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~-a~~~la~~~~~l~~~~~a~g~~~~ 253 (1173)
+.+.|+.+-+++-+..|.-+.++...-......|+++.|++..+......--... +....+..+.
T Consensus 169 areaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLt-------------- 234 (531)
T COG3898 169 AREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLT-------------- 234 (531)
T ss_pred cHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHH--------------
Confidence 9999999999999999998888888888888999999999988776543211111 1111111111
Q ss_pred HHHHHHHHHHHHHHHhhhcCChHHHHHHhchHHHHHhhccchhhhhhchhhhhhhhhhhhHhhHhhhhHHHHHHHHHHHH
Q 045024 254 GASLLEDACKVAEANTRLAGNMSCIWKLHGDIQLTYAKCFPWAEERQSLEFDVETFSASIVSWKTTCLMAAISSKSSYQR 333 (1173)
Q Consensus 254 A~~~l~~Al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 333 (1173)
.+|..... . +...|...-.+
T Consensus 235 -----AkA~s~ld------a-------------------------------------------------dp~~Ar~~A~~ 254 (531)
T COG3898 235 -----AKAMSLLD------A-------------------------------------------------DPASARDDALE 254 (531)
T ss_pred -----HHHHHHhc------C-------------------------------------------------ChHHHHHHHHH
Confidence 11111100 0 01246677778
Q ss_pred HHhcCCCCHHHHHHHHHHHHHHhhHHHhhhhhhhhhHHHHHHHHHHHhhcCCCHHHHHHHHHhhcccH-HHHH---HHHH
Q 045024 334 ALYLAPWQANIYTDIAITSDLIYSLNEAYGHYQSAWHVSEKMALGALLLEGDNCQFWVTLGCLSNYNG-LKQH---ALIR 409 (1173)
Q Consensus 334 al~l~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~A~k~~~~al~~~p~~~~~~~~Lg~~~~~~~-~a~~---a~~k 409 (1173)
++++.|+....-.--+..+++.|+..++...++ .+.+.+|. ++++...- ....+ .+.. -..+
T Consensus 255 a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE-----------~aWK~ePH-P~ia~lY~--~ar~gdta~dRlkRa~~ 320 (531)
T COG3898 255 ANKLAPDLVPAAVVAARALFRDGNLRKGSKILE-----------TAWKAEPH-PDIALLYV--RARSGDTALDRLKRAKK 320 (531)
T ss_pred HhhcCCccchHHHHHHHHHHhccchhhhhhHHH-----------HHHhcCCC-hHHHHHHH--HhcCCCcHHHHHHHHHH
Confidence 889999988888888888888888888755444 34444443 22222111 11111 1121 2334
Q ss_pred HHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhHHHHhHHHHHH-hcCCHHHHHHHHHHHHhc
Q 045024 410 GLQLDVSLADAWAHIGKLYGEVGEKKLARQAFDSARSIDPSLALPWAGMSADVQA-SESLVDDAFESCLRAVQI 482 (1173)
Q Consensus 410 al~l~p~~~~a~~~Lg~~y~~~g~~e~A~~~f~~al~~~P~~~~a~~~l~a~~~~-~~g~~~eA~~~~~~al~~ 482 (1173)
...+.|++.+....++..-+.-|++..|...-+.+....|... .+.+++.+-. ..||-.+....+.+++.-
T Consensus 321 L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pres--~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 321 LESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPRES--AYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred HHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCchhh--HHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 4466788888888888888888888888888888888888752 2333454544 348888888887777764
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.02 E-value=6.1e-05 Score=75.19 Aligned_cols=97 Identities=20% Similarity=0.160 Sum_probs=47.9
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhhCCCCHH-----HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q 045024 62 YLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSV-----SGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQ 136 (1173)
Q Consensus 62 ~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~-----a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~ 136 (1173)
.-|.-++. .|+|++|..-|..|+++.|..+. .+...|.+.++++.++.|+..+.++++++|.+..++.+.+.+|
T Consensus 100 ~EGN~~F~-ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeay 178 (271)
T KOG4234|consen 100 KEGNELFK-NGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAY 178 (271)
T ss_pred HHHHHhhh-cccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHH
Confidence 34555555 56666666666666666554432 1333444444444444444444444444444444444444444
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCC
Q 045024 137 LHHKKWSEAVQSLQHAIRGYPTS 159 (1173)
Q Consensus 137 ~~~g~~~~A~~~l~~al~~~p~~ 159 (1173)
.++..|++|+..|++++..+|..
T Consensus 179 ek~ek~eealeDyKki~E~dPs~ 201 (271)
T KOG4234|consen 179 EKMEKYEEALEDYKKILESDPSR 201 (271)
T ss_pred HhhhhHHHHHHHHHHHHHhCcch
Confidence 44444444444444444444443
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.0013 Score=69.23 Aligned_cols=198 Identities=15% Similarity=0.086 Sum_probs=147.3
Q ss_pred HHHHHHHHHHHccCcHHHHHHHHHHHH-H-hCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 045024 24 LHLDLGLHLWENSESKEKAAEHFVIAA-K-LNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCEL 101 (1173)
Q Consensus 24 ~~~~lg~~~~~~~~~~~~A~~~~~~al-~-~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~~ 101 (1173)
+...++...-.-++ .++-+..+.+.+ . ....+......-|.++.+ .|++++|++...+. .+.++...-..+
T Consensus 74 Avr~~a~~~~~e~~-~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~-~~~~deAl~~~~~~-----~~lE~~Al~VqI 146 (299)
T KOG3081|consen 74 AVRLLAEYLELESN-KKSILASLYELVADSTDGSNLIDLLLAAIIYMH-DGDFDEALKALHLG-----ENLEAAALNVQI 146 (299)
T ss_pred HHHHHHHHhhCcch-hHHHHHHHHHHHHhhccchhHHHHHHhhHHhhc-CCChHHHHHHHhcc-----chHHHHHHHHHH
Confidence 34444444433333 455555444443 2 233344566667788889 99999999887763 445666666788
Q ss_pred HHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Q 045024 102 LEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLH----HKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFS 177 (1173)
Q Consensus 102 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~----~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~ 177 (1173)
+.+..+.+-|...++++.+.+.+. .+..+|..+.. .+.+.+|.-+|++.-+..|..+......+.+.+.+|+++
T Consensus 147 ~lk~~r~d~A~~~lk~mq~ided~--tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~e 224 (299)
T KOG3081|consen 147 LLKMHRFDLAEKELKKMQQIDEDA--TLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYE 224 (299)
T ss_pred HHHHHHHHHHHHHHHHHHccchHH--HHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHH
Confidence 889999999999999998877654 33334444433 356889999999998878888999999999999999999
Q ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHH-HHHHHHhhcCCCHHH
Q 045024 178 AAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVE-QFQLALKISSENVSA 230 (1173)
Q Consensus 178 ~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~-~~~~al~~~p~~~~a 230 (1173)
+|...++.++..++++++++.++..+-...|...++.+ .+.+....+|+++..
T Consensus 225 eAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~~v 278 (299)
T KOG3081|consen 225 EAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQLKLSHPEHPFV 278 (299)
T ss_pred HHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcchHH
Confidence 99999999999999999999999999999998877765 455666677887654
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.00011 Score=78.26 Aligned_cols=101 Identities=20% Similarity=0.145 Sum_probs=50.7
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc---HHHHHHHH
Q 045024 60 FRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDS---VSGEALCELLEHGGKESLEVVVCREASDKSPRA---FWAFRRLG 133 (1173)
Q Consensus 60 ~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~---~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~la 133 (1173)
.|..+.-++. .|+|..|...|..-++..|+.. .+++.||.+++.+|++++|...|..+.+..|++ +++++.+|
T Consensus 144 ~Y~~A~~~~k-sgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDLYK-SGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHHHH-cCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 4445555555 5555555555555555555442 335555555555555555555555554444432 34455555
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 045024 134 YLQLHHKKWSEAVQSLQHAIRGYPTSPH 161 (1173)
Q Consensus 134 ~~~~~~g~~~~A~~~l~~al~~~p~~~~ 161 (1173)
.+...+|+.++|-..|+++++..|+...
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~YP~t~a 250 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKRYPGTDA 250 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHCCCCHH
Confidence 5555555555555555555555554443
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.00018 Score=69.55 Aligned_cols=105 Identities=20% Similarity=0.264 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh---HHHHH
Q 045024 126 FWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTS---PHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSI---FPLLE 199 (1173)
Q Consensus 126 ~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~a~~~ 199 (1173)
+..++.-|...++.|+|++|++.|+.+....|.. ..+...+|.+|++.|++++|+..+++.++++|.++ -+++.
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~ 89 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYM 89 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHH
Confidence 4445556666666666666666666666655532 44556666666666666666666666666666542 45556
Q ss_pred HHHHHHHcCC---------------hHHHHHHHHHHHhhcCCCHHH
Q 045024 200 SGNIFLMLGN---------------FRKGVEQFQLALKISSENVSA 230 (1173)
Q Consensus 200 la~~~~~~g~---------------~~~A~~~~~~al~~~p~~~~a 230 (1173)
.|.+++.+.. ..+|...|++++...|++.-+
T Consensus 90 ~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya 135 (142)
T PF13512_consen 90 RGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYA 135 (142)
T ss_pred HHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhH
Confidence 6666665554 678999999999999987643
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.00014 Score=70.33 Aligned_cols=82 Identities=11% Similarity=-0.005 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc---HHHHHH
Q 045024 58 VAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDS---VSGEALCELLEHGGKESLEVVVCREASDKSPRA---FWAFRR 131 (1173)
Q Consensus 58 ~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~---~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~ 131 (1173)
..++.-|...+. .|+|++|++.|+......|... .+.+.++.+|+..|++++|+..+++.++++|++ ..+++.
T Consensus 11 ~~ly~~a~~~l~-~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~ 89 (142)
T PF13512_consen 11 QELYQEAQEALQ-KGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYM 89 (142)
T ss_pred HHHHHHHHHHHH-hCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHH
Confidence 344444444444 5555555555555444444322 234444455555555555555555555554443 234444
Q ss_pred HHHHHHHcC
Q 045024 132 LGYLQLHHK 140 (1173)
Q Consensus 132 la~~~~~~g 140 (1173)
.|.+++.+.
T Consensus 90 ~gL~~~~~~ 98 (142)
T PF13512_consen 90 RGLSYYEQD 98 (142)
T ss_pred HHHHHHHHh
Confidence 444444433
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.0052 Score=67.74 Aligned_cols=168 Identities=16% Similarity=0.037 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 045024 22 PSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNA-VAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCE 100 (1173)
Q Consensus 22 ~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~-~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~ 100 (1173)
+-++..-+..-.-.|+ ++.|.+-|+.++. +|+.- --+..+=.-... .|+.+.|+.+-+++-+..|.-+.++...-.
T Consensus 120 pLIhlLeAQaal~eG~-~~~Ar~kfeAMl~-dPEtRllGLRgLyleAqr-~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe 196 (531)
T COG3898 120 PLIHLLEAQAALLEGD-YEDARKKFEAMLD-DPETRLLGLRGLYLEAQR-LGAREAARHYAERAAEKAPQLPWAARATLE 196 (531)
T ss_pred HHHHHHHHHHHHhcCc-hHHHHHHHHHHhc-ChHHHHHhHHHHHHHHHh-cccHHHHHHHHHHHHhhccCCchHHHHHHH
Confidence 3444444555555555 6777777766553 33211 111111112223 566667777777776666666666666666
Q ss_pred HHHHCCCHHHHHHHHHHHHhh---CCCc---HHHHHHHHHHH-HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 045024 101 LLEHGGKESLEVVVCREASDK---SPRA---FWAFRRLGYLQ-LHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRL 173 (1173)
Q Consensus 101 ~~~~~g~~~~A~~~~~~al~~---~p~~---~~a~~~la~~~-~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~ 173 (1173)
.....|+++.|++..+..... .++. ..+-..-+... .-.-+...|...-.+++++.|+...+-..-+..+++.
T Consensus 197 ~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d 276 (531)
T COG3898 197 ARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKLAPDLVPAAVVAARALFRD 276 (531)
T ss_pred HHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCccchHHHHHHHHHHhc
Confidence 666667777766666544221 1111 01111111111 1123355555555555555555555555555555555
Q ss_pred CCHHHHHHHHHHHHHhCCC
Q 045024 174 GMFSAAIKSYGRAIELDDT 192 (1173)
Q Consensus 174 g~~~~A~~~~~~al~~~p~ 192 (1173)
|+..++-..++.+.+..|.
T Consensus 277 ~~~rKg~~ilE~aWK~ePH 295 (531)
T COG3898 277 GNLRKGSKILETAWKAEPH 295 (531)
T ss_pred cchhhhhhHHHHHHhcCCC
Confidence 5555555555555555443
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.013 Score=70.36 Aligned_cols=179 Identities=13% Similarity=0.021 Sum_probs=124.4
Q ss_pred HHHHHHhhCCCChhHHHHhHHHHHHhcCCHHHHHHHHHHHHhcCCc--hHHHHHH------HHHHHHh--CCCChHHHHH
Q 045024 440 AFDSARSIDPSLALPWAGMSADVQASESLVDDAFESCLRAVQILPL--AEFQIGL------AKLAKLS--GHLSSSQVFG 509 (1173)
Q Consensus 440 ~f~~al~~~P~~~~a~~~l~a~~~~~~g~~~eA~~~~~~al~~~p~--~~~~~~l------a~l~~~~--g~~~~~~A~~ 509 (1173)
.|.-++++-|......+. ...-.||-+.+++.+.++.+.... +-....+ .....-. .....+.+..
T Consensus 179 ~f~L~lSlLPp~~~kll~----~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~ 254 (468)
T PF10300_consen 179 LFNLVLSLLPPKVLKLLS----FVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEE 254 (468)
T ss_pred HHHHHHHhCCHHHHHHHh----hcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHH
Confidence 555566666654333333 333467888888888777663221 1111111 0111111 3444578999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHH
Q 045024 510 AIQQAIQRGPHYPESHNLYGLVCEARSDYQAAVVSYRLARYAISSSSGTVPNSHFQDISINLARSLSRAGNALDAVRECE 589 (1173)
Q Consensus 510 ~l~~al~~~P~~~~a~~~lg~i~~~~g~~~~A~~~~~kAl~l~~~~pe~~~~~~~~~~~~~La~~~~~~g~~~eAi~~~~ 589 (1173)
.++...+..|+....++..|.++...|+.++|++.|++++......+ .-....++.++.++.-+++|++|...|.
T Consensus 255 lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~-----Ql~~l~~~El~w~~~~~~~w~~A~~~f~ 329 (468)
T PF10300_consen 255 LLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWK-----QLHHLCYFELAWCHMFQHDWEEAAEYFL 329 (468)
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHH-----hHHHHHHHHHHHHHHHHchHHHHHHHHH
Confidence 99999999999999999999999999999999999998863212111 1223478899999999999999999999
Q ss_pred HHHHcCCCCHHHH-HHHHHHHHHcCCh-------HHHHHHHHHHhh
Q 045024 590 SLERQGMLDAEVL-QVYAFSLWQLGKY-------DLALSMARNLAS 627 (1173)
Q Consensus 590 ~~~~~~p~~~~~~-~~la~a~~~~g~~-------~eA~~~~~~aL~ 627 (1173)
++.+.+.-+...+ +..|.++...|+. ++|.+.|+++-.
T Consensus 330 ~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 330 RLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 9998776655544 6678888999999 777777776644
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=97.92 E-value=1.7e-05 Score=69.95 Aligned_cols=74 Identities=16% Similarity=0.105 Sum_probs=62.3
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 045024 519 PHYPESHNLYGLVCEARSDYQAAVVSYRLARYAISSSSGTVPNSHFQDISINLARSLSRAGNALDAVRECESLERQ 594 (1173)
Q Consensus 519 P~~~~a~~~lg~i~~~~g~~~~A~~~~~kAl~l~~~~pe~~~~~~~~~~~~~La~~~~~~g~~~eAi~~~~~~~~~ 594 (1173)
|+-..++..+|.++...|++++|+.+|++++++.+..++ ..+..+.++.++|.++...|++++|++.+++++++
T Consensus 2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~--~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGD--DHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTT--HHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 445678899999999999999999999999998655543 13456889999999999999999999999998754
|
... |
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.0024 Score=67.28 Aligned_cols=220 Identities=13% Similarity=0.042 Sum_probs=163.5
Q ss_pred CCHHHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhC--CCCHHHHHH
Q 045024 20 DDPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLS--PDDSVSGEA 97 (1173)
Q Consensus 20 ~~~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~--p~~~~a~~~ 97 (1173)
......+.+.+.|...|. +..-+...... ......+...++.+... -++.++-+....+-+... ..+......
T Consensus 39 ~~~e~d~y~~raylAlg~-~~~~~~eI~~~---~~~~lqAvr~~a~~~~~-e~~~~~~~~~l~E~~a~~~~~sn~i~~l~ 113 (299)
T KOG3081|consen 39 TDVELDVYMYRAYLALGQ-YQIVISEIKEG---KATPLQAVRLLAEYLEL-ESNKKSILASLYELVADSTDGSNLIDLLL 113 (299)
T ss_pred chhHHHHHHHHHHHHccc-ccccccccccc---cCChHHHHHHHHHHhhC-cchhHHHHHHHHHHHHhhccchhHHHHHH
Confidence 567777888888888887 55444433322 22234455666666666 666666665555544332 233345666
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----c
Q 045024 98 LCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHR----L 173 (1173)
Q Consensus 98 La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~----~ 173 (1173)
-|.++...|++++|+...... .+.++...-..++.+..+.+-|...++++.+++.+ ..+..||..+.+ .
T Consensus 114 aa~i~~~~~~~deAl~~~~~~-----~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided--~tLtQLA~awv~la~gg 186 (299)
T KOG3081|consen 114 AAIIYMHDGDFDEALKALHLG-----ENLEAAALNVQILLKMHRFDLAEKELKKMQQIDED--ATLTQLAQAWVKLATGG 186 (299)
T ss_pred hhHHhhcCCChHHHHHHHhcc-----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchH--HHHHHHHHHHHHHhccc
Confidence 678899999999999988763 34456666678888999999999999999988653 345556666655 3
Q ss_pred CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhhcH
Q 045024 174 GMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLASGLLGLAKQCINLGAF 251 (1173)
Q Consensus 174 g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~l~~~~~a~g~~ 251 (1173)
+.+.+|.-+|+..-+..|..+..+...+.+.+.+|++++|...++.++..++++++...++..+-...|.......++
T Consensus 187 ek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~ 264 (299)
T KOG3081|consen 187 EKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERN 264 (299)
T ss_pred hhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHH
Confidence 578999999999998888889999999999999999999999999999999999999999888887777754444333
|
|
| >KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.073 Score=64.57 Aligned_cols=450 Identities=13% Similarity=0.027 Sum_probs=255.2
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH---HcCChHHHHHH
Q 045024 140 KKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFL---MLGNFRKGVEQ 216 (1173)
Q Consensus 140 g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~---~~g~~~~A~~~ 216 (1173)
+.-++-+..++.-+.+++.+...+..|..++.+.|++++-...-.++.++.|..+..|.....-.. ..++..++...
T Consensus 93 ~~~~~ei~t~~ee~ai~~y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~ 172 (881)
T KOG0128|consen 93 GGGNQEIRTLEEELAINSYKYAQMVQLIGLLRKLGDLEKLRQARLEMSEIAPLPPHLWLEWLKDELSMTQSEERKEVEEL 172 (881)
T ss_pred ccchhHHHHHHHHhcccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCcchhHHHHH
Confidence 344555666666677777777788888888888888888777777777777777777765443322 23666677778
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHhhhcCChHHHHHHhchHHHHHhhccchh
Q 045024 217 FQLALKISSENVSAHYGLASGLLGLAKQCINLGAFRWGASLLEDACKVAEANTRLAGNMSCIWKLHGDIQLTYAKCFPWA 296 (1173)
Q Consensus 217 ~~~al~~~p~~~~a~~~la~~~~~l~~~~~a~g~~~~A~~~l~~Al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 296 (1173)
|++++.- -..+..|...+......+......++++.....+++|+........ .-+.+|...-.+....
T Consensus 173 ~ekal~d-y~~v~iw~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t---~G~~~we~~~E~e~~~------- 241 (881)
T KOG0128|consen 173 FEKALGD-YNSVPIWEEVVNYLVGFGNVAKKSEDYKKERSVFERALRSLGSHIT---EGAAIWEMYREFEVTY------- 241 (881)
T ss_pred HHHHhcc-cccchHHHHHHHHHHhccccccccccchhhhHHHHHHHhhhhhhhc---ccHHHHHHHHHHHHHH-------
Confidence 8887753 3445566666666666666656667777777778888776544333 1122222222222111
Q ss_pred hhhhchhhhhhhhhhhhHhhHhhhhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHhhhhhhhhhHHHHHHH
Q 045024 297 EERQSLEFDVETFSASIVSWKTTCLMAAISSKSSYQRALYLAPWQANIYTDIAITSDLIYSLNEAYGHYQSAWHVSEKMA 376 (1173)
Q Consensus 297 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~A~k~~ 376 (1173)
.+-...++-+..+...+... -+.++...--.-......++.....
T Consensus 242 ----------------------l~n~~~~qv~a~~~~el~~~-~D~~~~~~~~~~~sk~h~~~~~~~~------------ 286 (881)
T KOG0128|consen 242 ----------------------LCNVEQRQVIALFVRELKQP-LDEDTRGWDLSEQSKAHVYDVETKK------------ 286 (881)
T ss_pred ----------------------HHhHHHHHHHHHHHHHHhcc-chhhhhHHHHHHHHhcchHHHHhcc------------
Confidence 11111233445555555543 2222111000000000001100000
Q ss_pred HHHHhhcCCCHHHHHHHHHhhcccHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhHHH
Q 045024 377 LGALLLEGDNCQFWVTLGCLSNYNGLKQHALIRGLQLDVSLADAWAHIGKLYGEVGEKKLARQAFDSARSIDPSLALPWA 456 (1173)
Q Consensus 377 ~~al~~~p~~~~~~~~Lg~~~~~~~~a~~a~~kal~l~p~~~~a~~~Lg~~y~~~g~~e~A~~~f~~al~~~P~~~~a~~ 456 (1173)
+ -..+.+.......|++.++..|.-..-|..+.+.-...|++-.-...++++....+.+...|+
T Consensus 287 -------~---------~~a~~~l~~~~~~~e~~~q~~~~~~q~~~~yidfe~~~G~p~ri~l~~eR~~~E~~~~~~~wi 350 (881)
T KOG0128|consen 287 -------L---------DDALKNLAKILFKFERLVQKEPIKDQEWMSYIDFEKKSGDPVRIQLIEERAVAEMVLDRALWI 350 (881)
T ss_pred -------H---------HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHhccccHHHHh
Confidence 0 000111122223456666666666777888888888889988888899999988888888998
Q ss_pred HhHHHHHHhcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH--
Q 045024 457 GMSADVQASESLVDDAFESCLRAVQILPLAEFQIGLAKLAKLSGHLSSSQVFGAIQQAIQRGPHYPESHNLYGLVCEA-- 534 (1173)
Q Consensus 457 ~l~a~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~la~l~~~~g~~~~~~A~~~l~~al~~~P~~~~a~~~lg~i~~~-- 534 (1173)
.+....-...+-.+.+...+.+++...|-.......+.+....++-....-...+.+.+.. ..-+......+.+
T Consensus 351 ~y~~~~d~eLkv~~~~~~~~~ra~R~cp~tgdL~~rallAleR~re~~~vI~~~l~~~ls~----~~~l~~~~~~~rr~~ 426 (881)
T KOG0128|consen 351 GYGVYLDTELKVPQRGVSVHPRAVRSCPWTGDLWKRALLALERNREEITVIVQNLEKDLSM----TVELHNDYLAYRRRC 426 (881)
T ss_pred hhhhhcccccccccccccccchhhcCCchHHHHHHHHHHHHHhcCcchhhHHHHHHHHHHH----HHHHHHHHHHHHHhh
Confidence 8655444456666667777778888877655555555555444443222222222222221 1111222222221
Q ss_pred -----cCCHHHHHHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHcCCCCHH-HHHHHHH
Q 045024 535 -----RSDYQAAVVSYRLARYAISSSSGTVPNSHFQDISINLARSLSR-AGNALDAVRECESLERQGMLDAE-VLQVYAF 607 (1173)
Q Consensus 535 -----~g~~~~A~~~~~kAl~l~~~~pe~~~~~~~~~~~~~La~~~~~-~g~~~eAi~~~~~~~~~~p~~~~-~~~~la~ 607 (1173)
..+++.=.+.|+.|...+...-+.. ......++...|+++.. +++.+.|..+.+.+...+-.+.. .|+....
T Consensus 427 ~~~~~s~~~s~lr~~F~~A~~eLt~~~~~~-~Dt~~~~~q~wA~~E~sl~~nmd~~R~iWn~imty~~~~iag~Wle~~~ 505 (881)
T KOG0128|consen 427 TNIIDSQDYSSLRAAFNHAWEELTELYGDQ-LDTRTEVLQLWAQVEASLLKNMDKAREIWNFIMTYGGGSIAGKWLEAIN 505 (881)
T ss_pred cccchhhhHHHHHHHHHHHHHHHHHHhhhh-hhhHHHHHHHHHHHHHHHhhchhhhhHhhhccccCCcchHHHHHHHHHh
Confidence 2345555667777765554432221 12223455556666654 57899999999998877777766 7888888
Q ss_pred HHHHcCChHHHHHHHHHHhhhccccccchhhhhHHHHHHHHHHhcChhhhh
Q 045024 608 SLWQLGKYDLALSMARNLASSVSAMEQSSAAASVSFICRLLYHISGLDSTI 658 (1173)
Q Consensus 608 a~~~~g~~~eA~~~~~~aL~~~p~~~~~~~~~~~~~la~l~~~~g~~~~A~ 658 (1173)
.-...|+...++.+++.++..... .+..-.++..+-+..-..|..+...
T Consensus 506 lE~~~g~~~~~R~~~R~ay~~~~~--~~~~~ev~~~~~r~Ere~gtl~~~~ 554 (881)
T KOG0128|consen 506 LEREYGDGPSARKVLRKAYSQVVD--PEDALEVLEFFRRFEREYGTLESFD 554 (881)
T ss_pred HHHHhCCchhHHHHHHHHHhcCcC--chhHHHHHHHHHHHHhccccHHHHh
Confidence 888889999999999999874331 1122244444444444444444433
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.15 Score=60.21 Aligned_cols=414 Identities=12% Similarity=-0.001 Sum_probs=242.4
Q ss_pred HHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HHcCCHHHHHHHHHHH
Q 045024 108 ESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAY-HRLGMFSAAIKSYGRA 186 (1173)
Q Consensus 108 ~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~-~~~g~~~~A~~~~~~a 186 (1173)
.+.+...|...+...|.-...|...|..-.+.|..+.+.++|++++..-|.....|..+-... ...|+.+.-...|++|
T Consensus 61 ~~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A 140 (577)
T KOG1258|consen 61 VDALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLSVDLWLSYLAFLKNNNGDPETLRDLFERA 140 (577)
T ss_pred HHHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCCHHHHHHHHHHH
Confidence 356666777778888888888888888888889999999999998888887777776544333 3567777878888888
Q ss_pred HHhCCCC---hHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHH
Q 045024 187 IELDDTS---IFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLASGLLGLAKQCINLGAFRWGASLLEDACK 263 (1173)
Q Consensus 187 l~~~p~~---~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~l~~~~~a~g~~~~A~~~l~~Al~ 263 (1173)
......+ ...|-.+...-..++++..-...|++.++..-..-..++..-.-+..... ..-+...+++..
T Consensus 141 ~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~~~f~~f~~~l~~~~--------~~~l~~~d~~~~ 212 (577)
T KOG1258|consen 141 KSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLNRHFDRFKQLLNQNE--------EKILLSIDELIQ 212 (577)
T ss_pred HHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhcCC--------hhhhcCHHHHHH
Confidence 8776543 44555666666777888888888888887632222111111000000000 000000111111
Q ss_pred HHHHHhhhcCChHHHHHHhchHHHHHhhccchhhhhhchhhhhhhhhhhhHhhHhhhhHHHHHHHHHHHHHHhcCCCCHH
Q 045024 264 VAEANTRLAGNMSCIWKLHGDIQLTYAKCFPWAEERQSLEFDVETFSASIVSWKTTCLMAAISSKSSYQRALYLAPWQAN 343 (1173)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~ 343 (1173)
........ ..... .+ ....................+++.....+...+.
T Consensus 213 l~~~~~~~---------------~~~~~----~~-------~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~----- 261 (577)
T KOG1258|consen 213 LRSDVAER---------------SKITH----SQ-------EPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIH----- 261 (577)
T ss_pred HhhhHHhh---------------hhccc----cc-------ChhHHHHHHHhhccCccchhhHHHHHHHHHHHHH-----
Confidence 11100000 00000 00 0000000000000000000111111111111000
Q ss_pred HHHHHHHHHHHHhhHHHhhhhhhhhhHHHHHHHHHHHhhcCCCHHHHHHHHHhhcccHHHHHHHHHHH--------hcCC
Q 045024 344 IYTDIAITSDLIYSLNEAYGHYQSAWHVSEKMALGALLLEGDNCQFWVTLGCLSNYNGLKQHALIRGL--------QLDV 415 (1173)
Q Consensus 344 ~~~~la~~~~~~g~~~eA~~~~~~~~~~A~k~~~~al~~~p~~~~~~~~Lg~~~~~~~~a~~a~~kal--------~l~p 415 (1173)
+++++.... ....+-.|+..+ .+++
T Consensus 262 -----------------------------~~~~~~s~~------------------~~~kr~~fE~~IkrpYfhvkpl~~ 294 (577)
T KOG1258|consen 262 -----------------------------EKVYQKSEE------------------EEEKRWGFEEGIKRPYFHVKPLDQ 294 (577)
T ss_pred -----------------------------HHHHHhhHh------------------HHHHHHhhhhhccccccccCcccH
Confidence 000000000 000011122222 2334
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhHHHHhHHHHHHhcCCHHHHHHHHHHHHhcCC--chHHHHHHH
Q 045024 416 SLADAWAHIGKLYGEVGEKKLARQAFDSARSIDPSLALPWAGMSADVQASESLVDDAFESCLRAVQILP--LAEFQIGLA 493 (1173)
Q Consensus 416 ~~~~a~~~Lg~~y~~~g~~e~A~~~f~~al~~~P~~~~a~~~l~a~~~~~~g~~~eA~~~~~~al~~~p--~~~~~~~la 493 (1173)
.+-..|....+.-...|+++...-.|++++---......|+.+ +.-....|+.+-|...+.++.++.- .+...+..+
T Consensus 295 aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky-~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a 373 (577)
T KOG1258|consen 295 AQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKY-ARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEA 373 (577)
T ss_pred HHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHH-HHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHH
Confidence 4557788888888999999999999999998877888899984 4455567999999988888888733 455666667
Q ss_pred HHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCCCCCCCchHHHHHHHHH
Q 045024 494 KLAKLSGHLSSSQVFGAIQQAIQRGPHYPESHNLYGLVCEARSDYQAAVVSYRLARYAISSSSGTVPNSHFQDISINLAR 573 (1173)
Q Consensus 494 ~l~~~~g~~~~~~A~~~l~~al~~~P~~~~a~~~lg~i~~~~g~~~~A~~~~~kAl~l~~~~pe~~~~~~~~~~~~~La~ 573 (1173)
.+....|+ .+.|...++...+..|+...+-.....+..+.|+.+.+... ........ ++.....-....+.+.++
T Consensus 374 ~f~e~~~n--~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~~~-~~l~s~~~--~~~~~~~i~~~l~~~~~r 448 (577)
T KOG1258|consen 374 RFEESNGN--FDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDANYK-NELYSSIY--EGKENNGILEKLYVKFAR 448 (577)
T ss_pred HHHHhhcc--HHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhhHH-HHHHHHhc--ccccCcchhHHHHHHHHH
Confidence 77777777 56899999999998899999888888999999999999852 22211111 111112233445566666
Q ss_pred HHHh-cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcC
Q 045024 574 SLSR-AGNALDAVRECESLERQGMLDAEVLQVYAFSLWQLG 613 (1173)
Q Consensus 574 ~~~~-~g~~~eAi~~~~~~~~~~p~~~~~~~~la~a~~~~g 613 (1173)
.... .++.+.|...+.++.+..|.+...+..+.......+
T Consensus 449 ~~~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 449 LRYKIREDADLARIILLEANDILPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HHHHHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCC
Confidence 5443 578999999999999999999887766666555544
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.0003 Score=80.48 Aligned_cols=69 Identities=10% Similarity=0.012 Sum_probs=58.7
Q ss_pred hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 045024 121 KSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHL---WEALGLAYHRLGMFSAAIKSYGRAIEL 189 (1173)
Q Consensus 121 ~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~---~~~la~~~~~~g~~~~A~~~~~~al~~ 189 (1173)
.+|+++.+++++|.+++..|+|++|+..|+++++++|++..+ |+++|.+|..+|++++|+..++++++.
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 467788888888888888888888888888888888888754 888888888888888888888888886
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.0011 Score=69.31 Aligned_cols=186 Identities=8% Similarity=0.047 Sum_probs=128.4
Q ss_pred HHHHHHHHccCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCC
Q 045024 27 DLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGG 106 (1173)
Q Consensus 27 ~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~~g 106 (1173)
..+.+....|+ ..+.+.-+...... -..+...... ....+..++.+++-+ ..+.+.++.++.-.|
T Consensus 127 lhAe~~~~lgn-pqesLdRl~~L~~~-------V~~ii~~~e~-~~~~ESsv~lW~KRl------~~Vmy~~~~~llG~k 191 (366)
T KOG2796|consen 127 LHAELQQYLGN-PQESLDRLHKLKTV-------VSKILANLEQ-GLAEESSIRLWRKRL------GRVMYSMANCLLGMK 191 (366)
T ss_pred HHHHHHHhcCC-cHHHHHHHHHHHHH-------HHHHHHHHHh-ccchhhHHHHHHHHH------HHHHHHHHHHHhcch
Confidence 34555555565 55555544443211 1112222222 233355666666644 346677777777888
Q ss_pred CHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----C--CCCHHHHHHHHHHHHHcCCHHHH
Q 045024 107 KESLEVVVCREASDKS-PRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRG----Y--PTSPHLWEALGLAYHRLGMFSAA 179 (1173)
Q Consensus 107 ~~~~A~~~~~~al~~~-p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~----~--p~~~~~~~~la~~~~~~g~~~~A 179 (1173)
.|.-.+..+.++++.+ |.++.....+|.+.++.||.+.|..+|+++-+. + ..+..+..+.+.+|.-.+++..|
T Consensus 192 Ey~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a 271 (366)
T KOG2796|consen 192 EYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEA 271 (366)
T ss_pred hhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHH
Confidence 8888888888888877 456777778888888888888888888854432 2 23455667778888888888888
Q ss_pred HHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCC
Q 045024 180 IKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSEN 227 (1173)
Q Consensus 180 ~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 227 (1173)
...|.+++..+|.++.+..+.|.+..-.|+...|++..+.+++..|..
T Consensus 272 ~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~ 319 (366)
T KOG2796|consen 272 HRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRH 319 (366)
T ss_pred HHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence 888888888888888888888888888888888888888888888864
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00092 Score=62.28 Aligned_cols=94 Identities=19% Similarity=0.128 Sum_probs=60.6
Q ss_pred HHHHHHHHccCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCH----HHHHHHHHHH
Q 045024 27 DLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDS----VSGEALCELL 102 (1173)
Q Consensus 27 ~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~----~a~~~La~~~ 102 (1173)
..|..+.+.|+ .+.|++.|.+++.+.|..+.+|.+.++.+.- +|+.++|+..+++++++..... .++...|.+|
T Consensus 48 l~~valaE~g~-Ld~AlE~F~qal~l~P~raSayNNRAQa~RL-q~~~e~ALdDLn~AleLag~~trtacqa~vQRg~ly 125 (175)
T KOG4555|consen 48 LKAIALAEAGD-LDGALELFGQALCLAPERASAYNNRAQALRL-QGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLY 125 (175)
T ss_pred HHHHHHHhccc-hHHHHHHHHHHHHhcccchHhhccHHHHHHH-cCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHH
Confidence 34555545554 6777777777777777777777777777777 7777777777777776643322 2356666667
Q ss_pred HHCCCHHHHHHHHHHHHhhC
Q 045024 103 EHGGKESLEVVVCREASDKS 122 (1173)
Q Consensus 103 ~~~g~~~~A~~~~~~al~~~ 122 (1173)
...|+-+.|...|+.+.++.
T Consensus 126 Rl~g~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 126 RLLGNDDAARADFEAAAQLG 145 (175)
T ss_pred HHhCchHHHHHhHHHHHHhC
Confidence 77777777777666665543
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00012 Score=83.64 Aligned_cols=68 Identities=21% Similarity=0.305 Sum_probs=38.4
Q ss_pred CCCCHHHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHccCCHHHHHHHHHHHHhh
Q 045024 18 NPDDPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVA---FRYLGHYYTRFSIDTQRAIKCYQRAVSL 87 (1173)
Q Consensus 18 ~P~~~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~~a---~~~lg~~~~~~~g~~~eA~~~~~~al~~ 87 (1173)
+|+++.+++++|..|+..|+ |++|+..|+++++++|+++++ |+++|.+|.. +|++++|+.++++++++
T Consensus 71 dP~~a~a~~NLG~AL~~lGr-yeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~-LGr~dEAla~LrrALel 141 (453)
T PLN03098 71 DVKTAEDAVNLGLSLFSKGR-VKDALAQFETALELNPNPDEAQAAYYNKACCHAY-REEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHh
Confidence 45555555555555555554 555555555555555555533 5555555555 55555555555555554
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.0062 Score=63.77 Aligned_cols=132 Identities=21% Similarity=0.213 Sum_probs=115.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------CCChHHHH
Q 045024 126 FWAFRRLGYLQLHHKKWSEAVQSLQHAIRGY-PTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELD------DTSIFPLL 198 (1173)
Q Consensus 126 ~~a~~~la~~~~~~g~~~~A~~~l~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~------p~~~~a~~ 198 (1173)
..+.+.+..++.-.|+|.-.+..+.+.++.+ |.++.....+|.+.++.||.+.|..+|+++-+.. .....+..
T Consensus 177 ~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~ 256 (366)
T KOG2796|consen 177 GRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLM 256 (366)
T ss_pred HHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHh
Confidence 3567788899999999999999999999988 5788899999999999999999999999654432 22455677
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhhcHHHHHHH
Q 045024 199 ESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLASGLLGLAKQCINLGAFRWGASL 257 (1173)
Q Consensus 199 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~l~~~~~a~g~~~~A~~~ 257 (1173)
+.+.+|.-.+++..|...|.+++..+|.++.+..+.+.+++-+|+...+.+..+.+...
T Consensus 257 n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 257 NSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred hhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 88889999999999999999999999999999999999999999999998888887654
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.0013 Score=61.24 Aligned_cols=98 Identities=16% Similarity=0.212 Sum_probs=75.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----hHHHHHHHHHH
Q 045024 129 FRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTS----IFPLLESGNIF 204 (1173)
Q Consensus 129 ~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~a~~~la~~~ 204 (1173)
+-..|......|+.+.|++.|.+++.+.|..+.++.+.+..+.-+|+.++|+..+++++++..+. ..++...|.+|
T Consensus 46 LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~ly 125 (175)
T KOG4555|consen 46 LELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLY 125 (175)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHH
Confidence 34456677777888888888888888888888888888888888888888888888888875443 35667788888
Q ss_pred HHcCChHHHHHHHHHHHhhcCC
Q 045024 205 LMLGNFRKGVEQFQLALKISSE 226 (1173)
Q Consensus 205 ~~~g~~~~A~~~~~~al~~~p~ 226 (1173)
..+|+.+.|...|+.+-++...
T Consensus 126 Rl~g~dd~AR~DFe~AA~LGS~ 147 (175)
T KOG4555|consen 126 RLLGNDDAARADFEAAAQLGSK 147 (175)
T ss_pred HHhCchHHHHHhHHHHHHhCCH
Confidence 8888888888888887776543
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.3 Score=61.11 Aligned_cols=483 Identities=15% Similarity=0.059 Sum_probs=245.0
Q ss_pred HHHHHHHHHHHhhCCCC----HHHHHHHHHHHH-HCCCHHHHHHHHHHHHhhCCC--c----HHHHHHHHHHHHHcCCHH
Q 045024 75 QRAIKCYQRAVSLSPDD----SVSGEALCELLE-HGGKESLEVVVCREASDKSPR--A----FWAFRRLGYLQLHHKKWS 143 (1173)
Q Consensus 75 ~eA~~~~~~al~~~p~~----~~a~~~La~~~~-~~g~~~~A~~~~~~al~~~p~--~----~~a~~~la~~~~~~g~~~ 143 (1173)
.-|+.+++-+++..+-. ..+++.+|.++. ...++++|..++++++.+..+ . ..+...++.++.+.+...
T Consensus 38 ~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~ 117 (608)
T PF10345_consen 38 ATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA 117 (608)
T ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH
Confidence 44777888877532222 345889999986 889999999999999777643 2 234556788888888777
Q ss_pred HHHHHHHHHHHhCCC---CHH-HHHHH--HHHHHHcCCHHHHHHHHHHHHHhC--CCChHH----HHHHHHHHHHcCChH
Q 045024 144 EAVQSLQHAIRGYPT---SPH-LWEAL--GLAYHRLGMFSAAIKSYGRAIELD--DTSIFP----LLESGNIFLMLGNFR 211 (1173)
Q Consensus 144 ~A~~~l~~al~~~p~---~~~-~~~~l--a~~~~~~g~~~~A~~~~~~al~~~--p~~~~a----~~~la~~~~~~g~~~ 211 (1173)
|...+++.++...+ ... ..+.+ ...+...+++..|++.++...... +.++.+ ....+.+....+..+
T Consensus 118 -a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~ 196 (608)
T PF10345_consen 118 -ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPD 196 (608)
T ss_pred -HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCch
Confidence 99999999876543 222 22222 233333489999999999988875 344332 334466677778888
Q ss_pred HHHHHHHHHHhhc------CCC----HHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHhhhcCChHHHHHH
Q 045024 212 KGVEQFQLALKIS------SEN----VSAHYGLASGLLGLAKQCINLGAFRWGASLLEDACKVAEANTRLAGNMSCIWKL 281 (1173)
Q Consensus 212 ~A~~~~~~al~~~------p~~----~~a~~~la~~~~~l~~~~~a~g~~~~A~~~l~~Al~~~~~~~~~~~~~~~~~~~ 281 (1173)
++++..+++.... |+. ..++..+..+. .....|++..+...+.+.-..+....... ... .|..
T Consensus 197 d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~-----~~l~~~~~~~~~~~L~~lq~~~~~~~~~~-~w~-~~~~ 269 (608)
T PF10345_consen 197 DVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLC-----CSLQQGDVKNSKQKLKQLQQFLDEIKKSP-SWP-SWDE 269 (608)
T ss_pred hHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHH-----HHHHcCCHHHHHHHHHHHHHHHHHhhcCc-cCC-CcCC
Confidence 8888888774421 221 11222222222 22334555555555554444443332221 000 0000
Q ss_pred hchHHHHH----------hhccchhhhhhchhhhhhhhhhhhHhhHhhhhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 045024 282 HGDIQLTY----------AKCFPWAEERQSLEFDVETFSASIVSWKTTCLMAAISSKSSYQRALYLAPWQANIYTDIAIT 351 (1173)
Q Consensus 282 ~g~~~~~~----------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~ 351 (1173)
-|.+.... ...+.|.+. +.+ ..-++.--+..
T Consensus 270 d~~i~l~~~~~~~~~~~~~~~f~wl~~--------~~l-------------------------------~~L~y~lS~l~ 310 (608)
T PF10345_consen 270 DGSIPLNIGEGSSNSGGTPLVFSWLPK--------EEL-------------------------------YALVYFLSGLH 310 (608)
T ss_pred CeeEEeecccccccCCCceeEEeecCH--------HHH-------------------------------HHHHHHHHHHH
Confidence 00000000 000000000 000 00011112222
Q ss_pred HHHHhhHHHhhhhhhhhhHHHHHHHHHHHhhcCCC-HHHHHHHHHhhcccHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 045024 352 SDLIYSLNEAYGHYQSAWHVSEKMALGALLLEGDN-CQFWVTLGCLSNYNGLKQHALIRGLQLDVSLADAWAHIGKLYGE 430 (1173)
Q Consensus 352 ~~~~g~~~eA~~~~~~~~~~A~k~~~~al~~~p~~-~~~~~~Lg~~~~~~~~a~~a~~kal~l~p~~~~a~~~Lg~~y~~ 430 (1173)
....+..+++.+. ++.+.+..++.....|.. ......+ .......+.+ .....+..+....-
T Consensus 311 ~~~~~~~~ks~k~----~~k~l~~i~~~~~~~~~~~~~sl~~~--------~~~~~~~~~l-----~~~~~~y~~~~~~~ 373 (608)
T PF10345_consen 311 NLYKGSMDKSEKF----LEKALKQIEKLKIKSPSAPSESLSEA--------SERIQWLRYL-----QCYLLFYQIWCNFI 373 (608)
T ss_pred HhhccCchHHHHH----HHHHHHHHHHhhccCCCCCCcCHHHH--------HHhHHHHHHH-----HHHHHHHHHHHHHH
Confidence 2233333333222 223333333333111111 0000000 0000011111 23466778888999
Q ss_pred cCCHHHHHHHHHHHHhhC---CC------ChhHHHHhHHHHHHhcCCHHHHHHHHH--------HHHhcCCchHHHH---
Q 045024 431 VGEKKLARQAFDSARSID---PS------LALPWAGMSADVQASESLVDDAFESCL--------RAVQILPLAEFQI--- 490 (1173)
Q Consensus 431 ~g~~e~A~~~f~~al~~~---P~------~~~a~~~l~a~~~~~~g~~~eA~~~~~--------~al~~~p~~~~~~--- 490 (1173)
.+++..|....+.+.... |. .+..++- .|..+...|+.+.|...|. .+....+..+...
T Consensus 374 ~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL-~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila~ 452 (608)
T PF10345_consen 374 RGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYL-LGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILAA 452 (608)
T ss_pred CcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHH-HHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHHH
Confidence 999999999998877653 22 1223333 5657778999999999998 4445555544322
Q ss_pred -HHHHHHHHhCCCChHH--HHHHHHHH---HHhCCC--CHHHHHHHHHHHH--HcCCHHHHHHHHHHHHHHh-hcCCCCC
Q 045024 491 -GLAKLAKLSGHLSSSQ--VFGAIQQA---IQRGPH--YPESHNLYGLVCE--ARSDYQAAVVSYRLARYAI-SSSSGTV 559 (1173)
Q Consensus 491 -~la~l~~~~g~~~~~~--A~~~l~~a---l~~~P~--~~~a~~~lg~i~~--~~g~~~~A~~~~~kAl~l~-~~~pe~~ 559 (1173)
.+..+....+.-...+ ....+++. ....|+ ...++..+-..+. ..-...++...+..+++.. +....
T Consensus 453 LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~~~~~~~~n-- 530 (608)
T PF10345_consen 453 LNLAIILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHLQEALKMANNKLGN-- 530 (608)
T ss_pred HHHHHHhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHhhcc--
Confidence 2233333333322112 22222222 112222 1122222222222 2223458888888888776 32211
Q ss_pred CCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC---CCCHH-HH-----HHHHHHHHHcCChHHHHHHHHHHh
Q 045024 560 PNSHFQDISINLARSLSRAGNALDAVRECESLERQG---MLDAE-VL-----QVYAFSLWQLGKYDLALSMARNLA 626 (1173)
Q Consensus 560 ~~~~~~~~~~~La~~~~~~g~~~eAi~~~~~~~~~~---p~~~~-~~-----~~la~a~~~~g~~~eA~~~~~~aL 626 (1173)
..-...++.-++..+. .|+..+.......+.... |+... .| -.+...+...|+.++|....++.-
T Consensus 531 -~~l~~~~L~lm~~~lf-~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~ 604 (608)
T PF10345_consen 531 -SQLLAILLNLMGHRLF-EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLD 604 (608)
T ss_pred -chHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence 2223345555666666 778777666666654432 22232 33 235566888899999988877653
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.0041 Score=64.10 Aligned_cols=184 Identities=14% Similarity=0.124 Sum_probs=121.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC----C-CC-hhHHHHhHHHHHHhcCCHHHHHHHHHHHHhcCCchHHHHH
Q 045024 418 ADAWAHIGKLYGEVGEKKLARQAFDSARSID----P-SL-ALPWAGMSADVQASESLVDDAFESCLRAVQILPLAEFQIG 491 (1173)
Q Consensus 418 ~~a~~~Lg~~y~~~g~~e~A~~~f~~al~~~----P-~~-~~a~~~l~a~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~ 491 (1173)
.+.+..-|.+|.-.+++..|=..|.++.+.. . ++ ...+.. .+.+| +.+++++|+..+++++++.. .
T Consensus 34 adl~~~Aan~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~Yve-A~~cy-kk~~~~eAv~cL~~aieIyt------~ 105 (288)
T KOG1586|consen 34 AELYERAANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVE-AANCY-KKVDPEEAVNCLEKAIEIYT------D 105 (288)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHH-HHHHh-hccChHHHHHHHHHHHHHHH------h
Confidence 4556667777777777887777777776542 1 11 222333 44444 55577777777777766532 1
Q ss_pred HHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHhhcCCCCCCCCchHHHHHH
Q 045024 492 LAKLAKLSGHLSSSQVFGAIQQAIQRGPHYPESHNLYGLVCEAR-SDYQAAVVSYRLARYAISSSSGTVPNSHFQDISIN 570 (1173)
Q Consensus 492 la~l~~~~g~~~~~~A~~~l~~al~~~P~~~~a~~~lg~i~~~~-g~~~~A~~~~~kAl~l~~~~pe~~~~~~~~~~~~~ 570 (1173)
++.+. .-...+..+|.+|+.. .++++|+.+|+++-+..... .....-...+..
T Consensus 106 ~Grf~-----------------------~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~e---es~ssANKC~lK 159 (288)
T KOG1586|consen 106 MGRFT-----------------------MAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGE---ESVSSANKCLLK 159 (288)
T ss_pred hhHHH-----------------------HHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcch---hhhhhHHHHHHH
Confidence 11111 1122456789999876 89999999999997665442 112233456778
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCHH-------HHHHHHHHHHHcCChHHHHHHHHHHhhhccccccc
Q 045024 571 LARSLSRAGNALDAVRECESLERQGMLDAE-------VLQVYAFSLWQLGKYDLALSMARNLASSVSAMEQS 635 (1173)
Q Consensus 571 La~~~~~~g~~~eAi~~~~~~~~~~p~~~~-------~~~~la~a~~~~g~~~eA~~~~~~aL~~~p~~~~~ 635 (1173)
.+..-...++|.+|+..|+++.....+++. -++.-|.+++-.++.-.+...+++-.+.+|...+.
T Consensus 160 vA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~ds 231 (288)
T KOG1586|consen 160 VAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDS 231 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCccccc
Confidence 888888999999999999999877666533 23556777777788777777777777777755433
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.0017 Score=64.82 Aligned_cols=115 Identities=12% Similarity=0.066 Sum_probs=76.0
Q ss_pred hHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHhhhcCChHHHHHHhchHHHHH
Q 045024 210 FRKGVEQFQLALKISSENVSAHYGLASGLLGLAKQCINLGAFRWGASLLEDACKVAEANTRLAGNMSCIWKLHGDIQLTY 289 (1173)
Q Consensus 210 ~~~A~~~~~~al~~~p~~~~a~~~la~~~~~l~~~~~a~g~~~~A~~~l~~Al~~~~~~~~~~~~~~~~~~~~g~~~~~~ 289 (1173)
++.|.+.++.....+|.+.+.++.-|.++..+++. ....++..+
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqf----k~g~es~~m-------------------------------- 50 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQF----KQGPESKKM-------------------------------- 50 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH----S-HHHHHHH--------------------------------
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhc----cCcchHHHH--------------------------------
Confidence 67888899999999999999999999988887771 000111111
Q ss_pred hhccchhhhhhchhhhhhhhhhhhHhhHhhhhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHhhhhhhhhh
Q 045024 290 AKCFPWAEERQSLEFDVETFSASIVSWKTTCLMAAISSKSSYQRALYLAPWQANIYTDIAITSDLIYSLNEAYGHYQSAW 369 (1173)
Q Consensus 290 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~ 369 (1173)
+++|+.-|++++.++|+..+++..+|.+|...+.+..........+
T Consensus 51 ----------------------------------iedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F 96 (186)
T PF06552_consen 51 ----------------------------------IEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYF 96 (186)
T ss_dssp ----------------------------------HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHH
T ss_pred ----------------------------------HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHH
Confidence 3468888999999999999999999999998887655444444555
Q ss_pred HHHHHHHHHHHhhcCCCHHHHHHHH
Q 045024 370 HVSEKMALGALLLEGDNCQFWVTLG 394 (1173)
Q Consensus 370 ~~A~k~~~~al~~~p~~~~~~~~Lg 394 (1173)
+.|...++++...+|++..+...|.
T Consensus 97 ~kA~~~FqkAv~~~P~ne~Y~ksLe 121 (186)
T PF06552_consen 97 EKATEYFQKAVDEDPNNELYRKSLE 121 (186)
T ss_dssp HHHHHHHHHHHHH-TT-HHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 6666666777777777665444443
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.0027 Score=72.67 Aligned_cols=144 Identities=17% Similarity=0.091 Sum_probs=97.8
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCC--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHH
Q 045024 93 VSGEALCELLEHGGKESLEVVVCREASDKSPR--AFWAFRRLGYLQLHHKKWSEAVQSLQHAIRG-YPTSPHLWEALGLA 169 (1173)
Q Consensus 93 ~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~--~~~a~~~la~~~~~~g~~~~A~~~l~~al~~-~p~~~~~~~~la~~ 169 (1173)
.+...+|.+..+.|+.++|++.++.+++..|. +..+..++..++...+.|.++...+.+.-++ -|+.+...+..+.+
T Consensus 260 y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALL 339 (539)
T PF04184_consen 260 YAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALL 339 (539)
T ss_pred hhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHH
Confidence 34677888889999999999999999887775 4567888899999999999998888886433 24555544444443
Q ss_pred HHH-cCC---------------HHHHHHHHHHHHHhCCCChHHHHHH------HHHHHHcCChHHHHHHHHHHHhhcCCC
Q 045024 170 YHR-LGM---------------FSAAIKSYGRAIELDDTSIFPLLES------GNIFLMLGNFRKGVEQFQLALKISSEN 227 (1173)
Q Consensus 170 ~~~-~g~---------------~~~A~~~~~~al~~~p~~~~a~~~l------a~~~~~~g~~~~A~~~~~~al~~~p~~ 227 (1173)
-.+ .++ -..|++.+.+|++.+|.-+..+..+ -.-+.+.|+ .||+.+---.+..-...
T Consensus 340 kaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YLLe~K~LilPPehilkrGD-SEAiaYAf~hL~hWk~v 418 (539)
T PF04184_consen 340 KARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYLLEMKSLILPPEHILKRGD-SEAIAYAFFHLQHWKRV 418 (539)
T ss_pred HHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhhhccCCCCCChHHhcCCCc-HHHHHHHHHHHHHHhcC
Confidence 322 111 2346788999999999876655432 123455665 78888777767665555
Q ss_pred HHHHHHHHHH
Q 045024 228 VSAHYGLASG 237 (1173)
Q Consensus 228 ~~a~~~la~~ 237 (1173)
+.+...+..+
T Consensus 419 eGAL~lL~~t 428 (539)
T PF04184_consen 419 EGALNLLHCT 428 (539)
T ss_pred HhHHHHHHHH
Confidence 5555444333
|
The molecular function of this protein is uncertain. |
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.21 Score=56.55 Aligned_cols=125 Identities=10% Similarity=0.021 Sum_probs=83.9
Q ss_pred hcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHH-HhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 045024 465 SESLVDDAFESCLRAVQIL-PLAEFQIGLAKLAK-LSGHLSSSQVFGAIQQAIQRGPHYPESHNLYGLVCEARSDYQAAV 542 (1173)
Q Consensus 465 ~~g~~~eA~~~~~~al~~~-p~~~~~~~la~l~~-~~g~~~~~~A~~~l~~al~~~P~~~~a~~~lg~i~~~~g~~~~A~ 542 (1173)
+..-.+.|..+|.++-+.. -..+.+..-+.+.. .+|+ ..-|...++--+...|+++..-...-..+.+.++-..|.
T Consensus 409 r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~~d--~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~inde~nar 486 (660)
T COG5107 409 RKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYATGD--RATAYNIFELGLLKFPDSTLYKEKYLLFLIRINDEENAR 486 (660)
T ss_pred HHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhcCC--cchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCcHHHHH
Confidence 4445677778887776654 23344444444332 2333 456888888888888988887777777788889999999
Q ss_pred HHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 045024 543 VSYRLARYAISSSSGTVPNSHFQDISINLARSLSRAGNALDAVRECESLERQGMLD 598 (1173)
Q Consensus 543 ~~~~kAl~l~~~~pe~~~~~~~~~~~~~La~~~~~~g~~~eAi~~~~~~~~~~p~~ 598 (1173)
..|++++..++.. ....+|-.+...-..-|+...++..=+++.+..|..
T Consensus 487 aLFetsv~r~~~~-------q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQe 535 (660)
T COG5107 487 ALFETSVERLEKT-------QLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQE 535 (660)
T ss_pred HHHHHhHHHHHHh-------hhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcH
Confidence 9999886554432 223366666666667788888877777776666654
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.0051 Score=66.40 Aligned_cols=159 Identities=7% Similarity=-0.042 Sum_probs=130.1
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCc---HHHHHHHHHHHH
Q 045024 62 YLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDK-SPRA---FWAFRRLGYLQL 137 (1173)
Q Consensus 62 ~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~-~p~~---~~a~~~la~~~~ 137 (1173)
.-+.+... .|++.+|-..+++.++-.|.+.-++..--.+++.+|+...-...+++++.. +|+. ....-.++..+.
T Consensus 108 ~~aai~~~-~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~ 186 (491)
T KOG2610|consen 108 AKAAILWG-RGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLE 186 (491)
T ss_pred hhHHHhhc-cccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHH
Confidence 34455667 799999999999999999999988888888999999999999999999877 6665 344555677788
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----ChHHHHHHHHHHHHcCChHHH
Q 045024 138 HHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDT----SIFPLLESGNIFLMLGNFRKG 213 (1173)
Q Consensus 138 ~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~----~~~a~~~la~~~~~~g~~~~A 213 (1173)
..|-|++|.+.-+++++++|.+..+...++.++...|++.++.+...+.-..-.. ...-|...+.++..-+.|+.|
T Consensus 187 E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~a 266 (491)
T KOG2610|consen 187 ECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKA 266 (491)
T ss_pred HhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHH
Confidence 9999999999999999999999999999999999999999999988764321111 122344567888888999999
Q ss_pred HHHHHHHH
Q 045024 214 VEQFQLAL 221 (1173)
Q Consensus 214 ~~~~~~al 221 (1173)
++.|++-+
T Consensus 267 leIyD~ei 274 (491)
T KOG2610|consen 267 LEIYDREI 274 (491)
T ss_pred HHHHHHHH
Confidence 99998755
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.0012 Score=65.89 Aligned_cols=107 Identities=20% Similarity=0.116 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCC----------hHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHH
Q 045024 176 FSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGN----------FRKGVEQFQLALKISSENVSAHYGLASGLLGLAKQC 245 (1173)
Q Consensus 176 ~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~----------~~~A~~~~~~al~~~p~~~~a~~~la~~~~~l~~~~ 245 (1173)
++.|.+.++.....+|.+.+.+++-|.++..+.+ +++|+.-|++++.++|+...+++.+|.++..++.
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~-- 84 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAF-- 84 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHh--
Confidence 4455555555555566665555555555544422 4578888899999999999999999999999887
Q ss_pred HHhhcHHHHHHHHHHHHHHHHHHhhhcCChHHHHHHhchH
Q 045024 246 INLGAFRWGASLLEDACKVAEANTRLAGNMSCIWKLHGDI 285 (1173)
Q Consensus 246 ~a~g~~~~A~~~l~~Al~~~~~~~~~~~~~~~~~~~~g~~ 285 (1173)
-..+..+|..+|++|...+.+.....|........+...
T Consensus 85 -l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~ 123 (186)
T PF06552_consen 85 -LTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMA 123 (186)
T ss_dssp -H---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred -hcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 344567788888889888888888888877666554443
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.0051 Score=70.53 Aligned_cols=186 Identities=16% Similarity=0.160 Sum_probs=126.0
Q ss_pred HHHHccCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHH
Q 045024 31 HLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESL 110 (1173)
Q Consensus 31 ~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~~g~~~~ 110 (1173)
-.++..+ ++.-++.-.+|++++|+.+++|..++.-. .....+|.++|+++++...... .........|..-+
T Consensus 177 ~AWRERn-p~aRIkaA~eALei~pdCAdAYILLAEEe---A~Ti~Eae~l~rqAvkAgE~~l----g~s~~~~~~g~~~e 248 (539)
T PF04184_consen 177 KAWRERN-PQARIKAAKEALEINPDCADAYILLAEEE---ASTIVEAEELLRQAVKAGEASL----GKSQFLQHHGHFWE 248 (539)
T ss_pred HHHhcCC-HHHHHHHHHHHHHhhhhhhHHHhhccccc---ccCHHHHHHHHHHHHHHHHHhh----chhhhhhcccchhh
Confidence 3345555 78888999999999999999998887532 3446888999999887543221 11111111121111
Q ss_pred HHHHHHHHHhhCCC--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 045024 111 EVVVCREASDKSPR--AFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPT--SPHLWEALGLAYHRLGMFSAAIKSYGRA 186 (1173)
Q Consensus 111 A~~~~~~al~~~p~--~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~a 186 (1173)
. ....+. ...+...+|.+..+.|+.++|++.++..++.+|. +..++.++..++...+.|.++...+.+.
T Consensus 249 ~-------~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 249 A-------WHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred h-------hhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 1 111111 2456678999999999999999999999998874 5678999999999999999999999886
Q ss_pred HHh-CCCChHHHHHHHHHHHH-cCC---------------hHHHHHHHHHHHhhcCCCHHHH
Q 045024 187 IEL-DDTSIFPLLESGNIFLM-LGN---------------FRKGVEQFQLALKISSENVSAH 231 (1173)
Q Consensus 187 l~~-~p~~~~a~~~la~~~~~-~g~---------------~~~A~~~~~~al~~~p~~~~a~ 231 (1173)
-++ -|++....+..+.+..+ .|+ -..|++.+.++++.+|.-+...
T Consensus 322 dDi~lpkSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YL 383 (539)
T PF04184_consen 322 DDISLPKSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYL 383 (539)
T ss_pred ccccCCchHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhh
Confidence 433 24555554544443322 122 1347789999999998876543
|
The molecular function of this protein is uncertain. |
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.023 Score=58.83 Aligned_cols=180 Identities=14% Similarity=0.077 Sum_probs=119.2
Q ss_pred cCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhC-----CCCHH-HHHHHHHHHHHCCCHH
Q 045024 36 SESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLS-----PDDSV-SGEALCELLEHGGKES 109 (1173)
Q Consensus 36 ~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~-----p~~~~-a~~~La~~~~~~g~~~ 109 (1173)
++.+++|.++|.++- ..|.. .++|+.|-..|.++-+.. ..+.. .+...+.+ ++.+++.
T Consensus 27 ~~k~eeAadl~~~Aa--------------n~ykl-aK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~c-ykk~~~~ 90 (288)
T KOG1586|consen 27 SNKYEEAAELYERAA--------------NMYKL-AKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANC-YKKVDPE 90 (288)
T ss_pred CcchHHHHHHHHHHH--------------HHHHH-HHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHH-hhccChH
Confidence 345888888887763 34444 555555555555554332 11122 23333333 4555888
Q ss_pred HHHHHHHHHHhhCCCcH------HHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCH
Q 045024 110 LEVVVCREASDKSPRAF------WAFRRLGYLQLHH-KKWSEAVQSLQHAIRGYPTS------PHLWEALGLAYHRLGMF 176 (1173)
Q Consensus 110 ~A~~~~~~al~~~p~~~------~a~~~la~~~~~~-g~~~~A~~~l~~al~~~p~~------~~~~~~la~~~~~~g~~ 176 (1173)
+|+.++++++++..+-. ..+..+|.+|... .++++|+.+|+++-+-.... -..+...+..-...++|
T Consensus 91 eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY 170 (288)
T KOG1586|consen 91 EAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQY 170 (288)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHH
Confidence 88888888887755432 2345778888655 89999999999987654422 23455566677788999
Q ss_pred HHHHHHHHHHHHhCCCCh-------HHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCHHHH
Q 045024 177 SAAIKSYGRAIELDDTSI-------FPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAH 231 (1173)
Q Consensus 177 ~~A~~~~~~al~~~p~~~-------~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~ 231 (1173)
.+|+..|+++....-++. ...+.-|.+++-..+.-.+...+++..+.+|.....+
T Consensus 171 ~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~dsR 232 (288)
T KOG1586|consen 171 SKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDSR 232 (288)
T ss_pred HHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcccccH
Confidence 999999999887655443 2234567777777888888889999999999876543
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.00024 Score=62.46 Aligned_cols=74 Identities=18% Similarity=0.258 Sum_probs=60.2
Q ss_pred ChHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHH
Q 045024 193 SIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLASGLLGLAKQCINLGAFRWGASLLEDACKVAE 266 (1173)
Q Consensus 193 ~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~l~~~~~a~g~~~~A~~~l~~Al~~~~ 266 (1173)
-..++..+|.+|..+|++++|+.+|++++++..........++.++..+|..+...|++++|+.++++++++++
T Consensus 4 ~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~~ 77 (78)
T PF13424_consen 4 TANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIFE 77 (78)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhc
Confidence 35678899999999999999999999999874333334456688888899999999999999999999998875
|
... |
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.0028 Score=70.83 Aligned_cols=133 Identities=13% Similarity=0.052 Sum_probs=59.0
Q ss_pred HHHHHHHHHHccCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 045024 25 HLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEH 104 (1173)
Q Consensus 25 ~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~ 104 (1173)
|..+.....+.+| .+.|..+|.++.+..+....+|...|.+-....++.+.|...|+++++..|.+...|......+..
T Consensus 4 ~i~~m~~~~r~~g-~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~ 82 (280)
T PF05843_consen 4 WIQYMRFMRRTEG-IEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIK 82 (280)
T ss_dssp HHHHHHHHHHHHH-HHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCC-hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 3344444444444 455555555555333334444544444433302333335555555555555555555555555555
Q ss_pred CCCHHHHHHHHHHHHhhCCCcH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 045024 105 GGKESLEVVVCREASDKSPRAF---WAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPT 158 (1173)
Q Consensus 105 ~g~~~~A~~~~~~al~~~p~~~---~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~ 158 (1173)
.|+.+.|..+|++++..-|... ..|......-...|+.+....+.+++.+..|.
T Consensus 83 ~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~ 139 (280)
T PF05843_consen 83 LNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPE 139 (280)
T ss_dssp TT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTT
T ss_pred hCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh
Confidence 5555555555555554444332 23333444444444444444444444444443
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.0021 Score=71.77 Aligned_cols=133 Identities=14% Similarity=0.060 Sum_probs=85.5
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-CCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q 045024 59 AFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEH-GGKESLEVVVCREASDKSPRAFWAFRRLGYLQL 137 (1173)
Q Consensus 59 a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~-~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~ 137 (1173)
+|..+.....+ .+..+.|...|.+|.+..+....+|...|.+.+. .++.+.|..+|+.+++..|.+...|......+.
T Consensus 3 v~i~~m~~~~r-~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~ 81 (280)
T PF05843_consen 3 VWIQYMRFMRR-TEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLI 81 (280)
T ss_dssp HHHHHHHHHHH-HHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-hCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 45556666666 6667777777777775555566667777777555 445555777777777777777777777777777
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 045024 138 HHKKWSEAVQSLQHAIRGYPTSP---HLWEALGLAYHRLGMFSAAIKSYGRAIELDDT 192 (1173)
Q Consensus 138 ~~g~~~~A~~~l~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 192 (1173)
..|+.+.|..+|++++..-|... ..|......-.+.|+.+...+..+++.+..|+
T Consensus 82 ~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~ 139 (280)
T PF05843_consen 82 KLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPE 139 (280)
T ss_dssp HTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTT
T ss_pred HhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh
Confidence 77777777777777776655433 45666666666667777666666666666665
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.063 Score=62.26 Aligned_cols=116 Identities=19% Similarity=0.160 Sum_probs=90.2
Q ss_pred HHHHHhhCCCcHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 045024 115 CREASDKSPRAFWAFRRLGYLQ-LHHKKWSEAVQSLQHAIRGYPTS--PHLWEALGLAYHRLGMFSAAIKSYGRAIELDD 191 (1173)
Q Consensus 115 ~~~al~~~p~~~~a~~~la~~~-~~~g~~~~A~~~l~~al~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 191 (1173)
...+++..|.+.... .++..| ..+|+..+|..++..++-..|.. -.++..+|.++.+.|...+|--++..|+.-.|
T Consensus 202 ~~~glq~~~~sw~lH-~~as~YWR~~G~~~~A~~Ca~~a~hf~~~h~kdi~lLSlaTiL~RaG~sadA~iILhAA~~dA~ 280 (886)
T KOG4507|consen 202 IHEGLQKNTSSWVLH-NMASFYWRIKGEPYQAVECAMRALHFSSRHNKDIALLSLATVLHRAGFSADAAVILHAALDDAD 280 (886)
T ss_pred HHHhhhcCchhHHHH-HHHHHHHHHcCChhhhhHHHHHHhhhCCcccccchhhhHHHHHHHcccccchhheeehhccCCc
Confidence 344455566554443 444444 45799999999999998877643 33677889999999999999999988888777
Q ss_pred CChHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCHHHH
Q 045024 192 TSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAH 231 (1173)
Q Consensus 192 ~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~ 231 (1173)
.....++.++.++..+|++......|..+.+.+|......
T Consensus 281 ~~t~n~y~l~~i~aml~~~N~S~~~ydha~k~~p~f~q~~ 320 (886)
T KOG4507|consen 281 FFTSNYYTLGNIYAMLGEYNHSVLCYDHALQARPGFEQAI 320 (886)
T ss_pred cccccceeHHHHHHHHhhhhhhhhhhhhhhccCcchhHHH
Confidence 7667788999999999999999999999999888765543
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.021 Score=59.48 Aligned_cols=192 Identities=16% Similarity=0.125 Sum_probs=122.7
Q ss_pred HHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHccCCHHHHHHHHHHHHhhC-----CCC
Q 045024 23 SLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQN------AVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLS-----PDD 91 (1173)
Q Consensus 23 ~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~------~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~-----p~~ 91 (1173)
..+..-+..|...+ +|++|..++.++.+-..++ +.++-..|..... ...+.++..+|+++..+. |+.
T Consensus 32 s~yekAAvafRnAk-~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake-~~klsEvvdl~eKAs~lY~E~Gspdt 109 (308)
T KOG1585|consen 32 SLYEKAAVAFRNAK-KFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKE-LSKLSEVVDLYEKASELYVECGSPDT 109 (308)
T ss_pred HHHHHHHHHHHhhc-cHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH-HHHhHHHHHHHHHHHHHHHHhCCcch
Confidence 44444455554444 5999999999998654443 2344555666666 788999999999998763 333
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCC
Q 045024 92 SVSGEALCELLEHGGKESLEVVVCREASDKSPRA------FWAFRRLGYLQLHHKKWSEAVQSLQHAIRG------YPTS 159 (1173)
Q Consensus 92 ~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~------~~a~~~la~~~~~~g~~~~A~~~l~~al~~------~p~~ 159 (1173)
...-...+--....-++++|+..|++++.+-..+ .+.+...+.++.+...+++|-..+.+-... .|+.
T Consensus 110 AAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~ 189 (308)
T KOG1585|consen 110 AAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQ 189 (308)
T ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccH
Confidence 3333444444566778888888888886653321 345566777888888888887777664322 2333
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCChHHHHHHHHHHHHcCChHHHHHHH
Q 045024 160 PHLWEALGLAYHRLGMFSAAIKSYGRAIELD----DTSIFPLLESGNIFLMLGNFRKGVEQF 217 (1173)
Q Consensus 160 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~----p~~~~a~~~la~~~~~~g~~~~A~~~~ 217 (1173)
...+.....+|....+|..|..+++..-++. |++..+..+|-..| ..|+.++....+
T Consensus 190 ~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 190 CKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKVL 250 (308)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHHH
Confidence 4455666666677778888888888866553 33455555554444 456666654443
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.013 Score=63.35 Aligned_cols=126 Identities=13% Similarity=0.161 Sum_probs=110.7
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCC---HHHHHHHHHHH
Q 045024 95 GEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRG-YPTS---PHLWEALGLAY 170 (1173)
Q Consensus 95 ~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~-~p~~---~~~~~~la~~~ 170 (1173)
...-+.+....|+..+|...+++.++..|.+.-++..--.+++..|+...-...+++++.. +|+- ..+.-.++..+
T Consensus 106 ~h~~aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL 185 (491)
T KOG2610|consen 106 RHAKAAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGL 185 (491)
T ss_pred hhhhHHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhH
Confidence 3344556677899999999999999999999999988889999999999999999999876 6655 44555677888
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHH
Q 045024 171 HRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLA 220 (1173)
Q Consensus 171 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~a 220 (1173)
...|-|++|.+.-+++++++|.+..+...++.++...|++.++.+...+.
T Consensus 186 ~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~t 235 (491)
T KOG2610|consen 186 EECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKT 235 (491)
T ss_pred HHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhc
Confidence 99999999999999999999999999999999999999999999987764
|
|
| >KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.0019 Score=66.86 Aligned_cols=110 Identities=12% Similarity=0.062 Sum_probs=95.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcC-----CCCCC----CCchHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 045024 522 PESHNLYGLVCEARSDYQAAVVSYRLARYAISSS-----SGTVP----NSHFQDISINLARSLSRAGNALDAVRECESLE 592 (1173)
Q Consensus 522 ~~a~~~lg~i~~~~g~~~~A~~~~~kAl~l~~~~-----pe~~~----~~~~~~~~~~La~~~~~~g~~~eAi~~~~~~~ 592 (1173)
..++..-|+-+++.|+|.+|...|+.|+..+... |.+++ .......+.|.+.++...|+|-++++....++
T Consensus 178 v~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL 257 (329)
T KOG0545|consen 178 VPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEIL 257 (329)
T ss_pred hHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHH
Confidence 4467788999999999999999999998755432 55554 34455678899999999999999999999999
Q ss_pred HcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHhhhccc
Q 045024 593 RQGMLDAEVLQVYAFSLWQLGKYDLALSMARNLASSVSA 631 (1173)
Q Consensus 593 ~~~p~~~~~~~~la~a~~~~g~~~eA~~~~~~aL~~~p~ 631 (1173)
..+|.+..+++..|.+....=+.++|...|..+|+.+|.
T Consensus 258 ~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldps 296 (329)
T KOG0545|consen 258 RHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPS 296 (329)
T ss_pred hcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChh
Confidence 999999999999999999999999999999999998884
|
|
| >KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.014 Score=61.39 Aligned_cols=165 Identities=13% Similarity=0.043 Sum_probs=101.4
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHH-HHHHHHHHHH
Q 045024 7 LLLQLEDSLEANPDDPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQ-RAIKCYQRAV 85 (1173)
Q Consensus 7 Ai~~l~~al~~~P~~~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~-eA~~~~~~al 85 (1173)
|+..-+.++..+|.+-.+|..+-.++...+.+..+-++++.++++.+|++-..|...-.+... .|++. .-++..+.++
T Consensus 62 Al~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~-l~d~s~rELef~~~~l 140 (318)
T KOG0530|consen 62 ALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVEL-LGDPSFRELEFTKLML 140 (318)
T ss_pred HHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHH-hcCcccchHHHHHHHH
Confidence 456666666666666666666666666655556666666777777777777776666666666 66666 5666666666
Q ss_pred hhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH-cC-----CHHHHHHHHHHHHHhCCCC
Q 045024 86 SLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLH-HK-----KWSEAVQSLQHAIRGYPTS 159 (1173)
Q Consensus 86 ~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~-~g-----~~~~A~~~l~~al~~~p~~ 159 (1173)
..+.++-.+|...-.+....+.++.-+.+..++++.+-.+-.+|...-.+... .| ..+.-+.+..+.+...|+|
T Consensus 141 ~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSAWN~Ryfvi~~~~~~~~~~~le~El~yt~~~I~~vP~N 220 (318)
T KOG0530|consen 141 DDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNSAWNQRYFVITNTKGVISKAELERELNYTKDKILLVPNN 220 (318)
T ss_pred hccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccchhheeeEEEEeccCCccHHHHHHHHHHHHHHHHhCCCC
Confidence 66666666666666666666667777777777666665554444432221111 11 1233445555666666777
Q ss_pred HHHHHHHHHHHHH
Q 045024 160 PHLWEALGLAYHR 172 (1173)
Q Consensus 160 ~~~~~~la~~~~~ 172 (1173)
..+|..|.-++..
T Consensus 221 eSaWnYL~G~l~~ 233 (318)
T KOG0530|consen 221 ESAWNYLKGLLEL 233 (318)
T ss_pred ccHHHHHHHHHHh
Confidence 7777666666654
|
|
| >KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.043 Score=57.83 Aligned_cols=244 Identities=13% Similarity=0.093 Sum_probs=175.0
Q ss_pred HHccCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHH-HH
Q 045024 33 WENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKES-LE 111 (1173)
Q Consensus 33 ~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~~g~~~-~A 111 (1173)
+.++..-..|+..-..++.++|.+-.+|...-.+......+..+-++++.++++-+|++-.+|...-.+....|++. .-
T Consensus 53 ~~~~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rE 132 (318)
T KOG0530|consen 53 IAKNEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRE 132 (318)
T ss_pred HhccccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccch
Confidence 34444468999999999999999999998888888774567888999999999999999999999888888899988 88
Q ss_pred HHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cC-----CHHHHHHHHHH
Q 045024 112 VVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHR-LG-----MFSAAIKSYGR 185 (1173)
Q Consensus 112 ~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~-~g-----~~~~A~~~~~~ 185 (1173)
++..+.++..+..+.-+|...-.+...-+.|+.-+.+..+.++.+-.|-.+|...-.+... .| ..+.-+.+...
T Consensus 133 Lef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSAWN~Ryfvi~~~~~~~~~~~le~El~yt~~ 212 (318)
T KOG0530|consen 133 LEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNSAWNQRYFVITNTKGVISKAELERELNYTKD 212 (318)
T ss_pred HHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccchhheeeEEEEeccCCccHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999887666666543222221 12 23445667778
Q ss_pred HHHhCCCChHHHHHHHHHHHH-cC--ChHHHHHHHHHHH-hhcCCCHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHH
Q 045024 186 AIELDDTSIFPLLESGNIFLM-LG--NFRKGVEQFQLAL-KISSENVSAHYGLASGLLGLAKQCINLGAFRWGASLLEDA 261 (1173)
Q Consensus 186 al~~~p~~~~a~~~la~~~~~-~g--~~~~A~~~~~~al-~~~p~~~~a~~~la~~~~~l~~~~~a~g~~~~A~~~l~~A 261 (1173)
.+...|++..+|..+.-++.. .| .+.+-........ ......|...-.+...+...+... ...+..+..+|
T Consensus 213 ~I~~vP~NeSaWnYL~G~l~~d~gl~s~s~vv~f~~~l~~~~~~~sP~lla~l~d~~~e~~l~~-----~~~~~~~a~~a 287 (318)
T KOG0530|consen 213 KILLVPNNESAWNYLKGLLELDSGLSSDSKVVSFVENLYLQLPKRSPFLLAFLLDLYAEDALAY-----KSSAEELARKA 287 (318)
T ss_pred HHHhCCCCccHHHHHHHHHHhccCCcCCchHHHHHHHHhhccCCCChhHHHHHHHHHHHHHhhc-----cccchHHHHHH
Confidence 889999999999999888876 44 2344444444444 333344555545555553322211 11112234456
Q ss_pred HHHHHHHh-hhcCChHHHHHH
Q 045024 262 CKVAEANT-RLAGNMSCIWKL 281 (1173)
Q Consensus 262 l~~~~~~~-~~~~~~~~~~~~ 281 (1173)
.+.+.... ...+-....|..
T Consensus 288 ~~ly~~La~~~DpiR~nyW~~ 308 (318)
T KOG0530|consen 288 VKLYEDLAIKVDPIRKNYWRH 308 (318)
T ss_pred HHHHHHHhhccCcHHHHHHHH
Confidence 66666655 455554445443
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.018 Score=62.10 Aligned_cols=162 Identities=15% Similarity=0.041 Sum_probs=111.6
Q ss_pred CHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHH-HHHHHHH
Q 045024 56 NAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFW-AFRRLGY 134 (1173)
Q Consensus 56 ~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~-a~~~la~ 134 (1173)
..+.-+..+.-... .|++.+|...|..++...|++..+...++.+|...|+.+.|...+...-........ .......
T Consensus 133 ~~e~~~~~~~~~~~-~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ 211 (304)
T COG3118 133 EEEEALAEAKELIE-AEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIE 211 (304)
T ss_pred HHHHHHHHhhhhhh-ccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHH
Confidence 34455566777778 899999999999999999999999999999999999999988887765332222211 1111112
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--ChHHHHHHHHHHHHcCChHH
Q 045024 135 LQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDT--SIFPLLESGNIFLMLGNFRK 212 (1173)
Q Consensus 135 ~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~a~~~la~~~~~~g~~~~ 212 (1173)
.+.+.....+. ..+++.+..+|++.++.+.++..+...|+.++|.+.+-..++.+-. +..+...+-.++...|.-+.
T Consensus 212 ll~qaa~~~~~-~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp 290 (304)
T COG3118 212 LLEQAAATPEI-QDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADP 290 (304)
T ss_pred HHHHHhcCCCH-HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCH
Confidence 22232222222 2345566778999999999999999999999999998888877544 45566666666666665555
Q ss_pred HHHHHHH
Q 045024 213 GVEQFQL 219 (1173)
Q Consensus 213 A~~~~~~ 219 (1173)
+...|++
T Consensus 291 ~~~~~RR 297 (304)
T COG3118 291 LVLAYRR 297 (304)
T ss_pred HHHHHHH
Confidence 5444444
|
|
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.49 Score=64.11 Aligned_cols=368 Identities=13% Similarity=0.072 Sum_probs=200.2
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhhCCCCHH----HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q 045024 62 YLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSV----SGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQL 137 (1173)
Q Consensus 62 ~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~----a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~ 137 (1173)
.++.+-++ .|.|.+|.-++++- ...+.... .+..+-.+|...++++.-....... ..+|. .........
T Consensus 1388 tLa~aSfr-c~~y~RalmylEs~-~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r-~a~~s----l~~qil~~e 1460 (2382)
T KOG0890|consen 1388 TLARASFR-CKAYARALMYLESH-RSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARR-FADPS----LYQQILEHE 1460 (2382)
T ss_pred HHHHHHHh-hHHHHHHHHHHHHh-ccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHh-hcCcc----HHHHHHHHH
Confidence 57777788 88889999888884 22222211 2444555888888888777666531 11222 334445566
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHH-HHHHHcCChHHHHHH
Q 045024 138 HHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESG-NIFLMLGNFRKGVEQ 216 (1173)
Q Consensus 138 ~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la-~~~~~~g~~~~A~~~ 216 (1173)
..|++..|..+|+++++.+|+....+...-......|.+...+...+-.....++...-+..++ .+-.+.++++.-..+
T Consensus 1461 ~~g~~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~~~~~s~~~eaaW~l~qwD~~e~~ 1540 (2382)
T KOG0890|consen 1461 ASGNWADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSEEVDELNSLGVEAAWRLSQWDLLESY 1540 (2382)
T ss_pred hhccHHHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcchhhccCHHHHHHHHHHHHHHhhhcchhhhhhh
Confidence 7889999999999999998888777777777777888888888877776665555555444443 334677777765555
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHh-------hhcCChHHHHHHhchHHHHH
Q 045024 217 FQLALKISSENVSAHYGLASGLLGLAKQCINLGAFRWGASLLEDACKVAEANT-------RLAGNMSCIWKLHGDIQLTY 289 (1173)
Q Consensus 217 ~~~al~~~p~~~~a~~~la~~~~~l~~~~~a~g~~~~A~~~l~~Al~~~~~~~-------~~~~~~~~~~~~~g~~~~~~ 289 (1173)
.. ..+-++..+. .+|.++....+.. .+. +.+.++..+... .........|...-..+.-.
T Consensus 1541 l~---~~n~e~w~~~-~~g~~ll~~~~kD----~~~-----~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~ 1607 (2382)
T KOG0890|consen 1541 LS---DRNIEYWSVE-SIGKLLLRNKKKD----EIA-----TLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLL 1607 (2382)
T ss_pred hh---cccccchhHH-HHHHHHHhhcccc----hhh-----HHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHH
Confidence 43 2222222222 1344443322200 000 001111111000 00000000000000000000
Q ss_pred hhccchhhhhhchhhhhhhhhhhhHhhHhhhhHHHHHHHHHHHHHH-hcCCCCHHHHHHHHHHHHHHhhHHHhhhhhhhh
Q 045024 290 AKCFPWAEERQSLEFDVETFSASIVSWKTTCLMAAISSKSSYQRAL-YLAPWQANIYTDIAITSDLIYSLNEAYGHYQSA 368 (1173)
Q Consensus 290 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al-~l~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~ 368 (1173)
-.....+.+ ...+++....
T Consensus 1608 -------------------------------------el~~~~~~l~~~s~~~~s~~----------------------- 1627 (2382)
T KOG0890|consen 1608 -------------------------------------ELENSIEELKKVSYDEDSAN----------------------- 1627 (2382)
T ss_pred -------------------------------------HHHHHHHHhhccCccccccc-----------------------
Confidence 000000000 1111100000
Q ss_pred hHHHHHHHHHHHhhcCCCHHHHHHHHHhhccc---HHHHHHHHHHH-------hcCCCcHHHHHHHHHHHHHcCCHHHHH
Q 045024 369 WHVSEKMALGALLLEGDNCQFWVTLGCLSNYN---GLKQHALIRGL-------QLDVSLADAWAHIGKLYGEVGEKKLAR 438 (1173)
Q Consensus 369 ~~~A~k~~~~al~~~p~~~~~~~~Lg~~~~~~---~~a~~a~~kal-------~l~p~~~~a~~~Lg~~y~~~g~~e~A~ 438 (1173)
+.+.|.+....-.+. ..-+-++.+++ ..+..-.+.|...+.+-...|.++.|.
T Consensus 1628 -----------------~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~ 1690 (2382)
T KOG0890|consen 1628 -----------------NSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQ 1690 (2382)
T ss_pred -----------------cchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHH
Confidence 011111111111111 11111222222 123445678888888888899999998
Q ss_pred HHHHHHHhhCCCChhHHHHhHHHHHHhcCCHHHHHHHHHHHHhcC-Cc--------h---------HHHHHHHHHHHHhC
Q 045024 439 QAFDSARSIDPSLALPWAGMSADVQASESLVDDAFESCLRAVQIL-PL--------A---------EFQIGLAKLAKLSG 500 (1173)
Q Consensus 439 ~~f~~al~~~P~~~~a~~~l~a~~~~~~g~~~eA~~~~~~al~~~-p~--------~---------~~~~~la~l~~~~g 500 (1173)
.+.-.|.+..+ +.+... .+..++..|+...|+..+++.++.+ |+ | .+.+.++.+....+
T Consensus 1691 nall~A~e~r~--~~i~~E-~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~~n~~i~~~~~L~~~~~~~es~ 1767 (2382)
T KOG0890|consen 1691 NALLNAKESRL--PEIVLE-RAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQSVNLLIFKKAKLKITKYLEESG 1767 (2382)
T ss_pred HHHHhhhhccc--chHHHH-HHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccchhhhhhhhhhHHHHHHHHHHHhc
Confidence 88888877763 345555 6778888999999999888888651 11 1 13344556667778
Q ss_pred CCChHHHHHHHHHHHHhCCCCHHHHHHHH
Q 045024 501 HLSSSQVFGAIQQAIQRGPHYPESHNLYG 529 (1173)
Q Consensus 501 ~~~~~~A~~~l~~al~~~P~~~~a~~~lg 529 (1173)
+....+-+..|+.+.+..|.....++.+|
T Consensus 1768 n~~s~~ilk~Y~~~~ail~ewe~~hy~l~ 1796 (2382)
T KOG0890|consen 1768 NFESKDILKYYHDAKAILPEWEDKHYHLG 1796 (2382)
T ss_pred chhHHHHHHHHHHHHHHcccccCceeeHH
Confidence 87778889999999999998777777777
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.00056 Score=52.66 Aligned_cols=40 Identities=23% Similarity=0.527 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhHHHH
Q 045024 418 ADAWAHIGKLYGEVGEKKLARQAFDSARSIDPSLALPWAG 457 (1173)
Q Consensus 418 ~~a~~~Lg~~y~~~g~~e~A~~~f~~al~~~P~~~~a~~~ 457 (1173)
|.+|..+|.+|...|++++|++.|+++++.+|+++.+|..
T Consensus 1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~ 40 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRA 40 (44)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHH
Confidence 4689999999999999999999999999999999999987
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.75 Score=54.60 Aligned_cols=121 Identities=11% Similarity=-0.097 Sum_probs=87.3
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhHHHHhHHHHHHhcCCHHHHH---HHHHHHHhc--CC--ch
Q 045024 414 DVSLADAWAHIGKLYGEVGEKKLARQAFDSARSIDPSLALPWAGMSADVQASESLVDDAF---ESCLRAVQI--LP--LA 486 (1173)
Q Consensus 414 ~p~~~~a~~~Lg~~y~~~g~~e~A~~~f~~al~~~P~~~~a~~~l~a~~~~~~g~~~eA~---~~~~~al~~--~p--~~ 486 (1173)
.|..+.+...-+.+-...|++..|...+++..+.-|+...+-+..++ ...+.|+.+.+. +++.....- ++ .+
T Consensus 362 ~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~-~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~ 440 (577)
T KOG1258|consen 362 VKKTPIIHLLEARFEESNGNFDDAKVILQRIESEYPGLVEVVLRKIN-WERRKGNLEDANYKNELYSSIYEGKENNGILE 440 (577)
T ss_pred CCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhCCchhhhHHHHHh-HHHHhcchhhhhHHHHHHHHhcccccCcchhH
Confidence 46677788888888889999999999999999888998877776444 666889988888 444443332 22 22
Q ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 045024 487 EFQIGLAKLAKLSGHLSSSQVFGAIQQAIQRGPHYPESHNLYGLVCEARS 536 (1173)
Q Consensus 487 ~~~~~la~l~~~~g~~~~~~A~~~l~~al~~~P~~~~a~~~lg~i~~~~g 536 (1173)
......+.+.....+ +.+.|...+.++++..|.+...+..+..+....+
T Consensus 441 ~l~~~~~r~~~~i~~-d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 441 KLYVKFARLRYKIRE-DADLARIILLEANDILPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HHHHHHHHHHHHHhc-CHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCC
Confidence 344455555544433 2468888999999999999888877777666554
|
|
| >KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.06 Score=62.38 Aligned_cols=113 Identities=19% Similarity=0.254 Sum_probs=69.2
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCH--HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCC
Q 045024 47 VIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDS--VSGEALCELLEHGGKESLEVVVCREASDKSPR 124 (1173)
Q Consensus 47 ~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~--~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~ 124 (1173)
..+++..|.+...+ .++..|++..|+..+|..++..++-..|... .++..+|.++.+.|...+|--++..++...|.
T Consensus 203 ~~glq~~~~sw~lH-~~as~YWR~~G~~~~A~~Ca~~a~hf~~~h~kdi~lLSlaTiL~RaG~sadA~iILhAA~~dA~~ 281 (886)
T KOG4507|consen 203 HEGLQKNTSSWVLH-NMASFYWRIKGEPYQAVECAMRALHFSSRHNKDIALLSLATVLHRAGFSADAAVILHAALDDADF 281 (886)
T ss_pred HHhhhcCchhHHHH-HHHHHHHHHcCChhhhhHHHHHHhhhCCcccccchhhhHHHHHHHcccccchhheeehhccCCcc
Confidence 34444455444333 3444444436777777777777766655432 23666777777777777776666666666665
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 045024 125 AFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSP 160 (1173)
Q Consensus 125 ~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~ 160 (1173)
-..-++.++.++...|++......|..+.+.+|...
T Consensus 282 ~t~n~y~l~~i~aml~~~N~S~~~ydha~k~~p~f~ 317 (886)
T KOG4507|consen 282 FTSNYYTLGNIYAMLGEYNHSVLCYDHALQARPGFE 317 (886)
T ss_pred ccccceeHHHHHHHHhhhhhhhhhhhhhhccCcchh
Confidence 555566677777777777777777777766666543
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.00063 Score=52.34 Aligned_cols=40 Identities=33% Similarity=0.412 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 045024 59 AFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALC 99 (1173)
Q Consensus 59 a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La 99 (1173)
++..+|..|.. .|++++|++.|+++++.+|+++.++..+|
T Consensus 3 ~~~~la~~~~~-~G~~~~A~~~~~~~l~~~P~~~~a~~~La 42 (44)
T PF13428_consen 3 AWLALARAYRR-LGQPDEAERLLRRALALDPDDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHH-cCCHHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence 45555555555 55555555555555555555555555544
|
|
| >KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.00076 Score=69.62 Aligned_cols=92 Identities=18% Similarity=0.252 Sum_probs=76.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChH
Q 045024 132 LGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFR 211 (1173)
Q Consensus 132 la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~ 211 (1173)
-|..++....|..|+..|.+++.++|..+..+.+.+.++++..+++.+.....++++++|+.+.+++.+|........|+
T Consensus 16 ~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~ 95 (284)
T KOG4642|consen 16 QGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYD 95 (284)
T ss_pred ccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhcccc
Confidence 45566667778888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHhh
Q 045024 212 KGVEQFQLALKI 223 (1173)
Q Consensus 212 ~A~~~~~~al~~ 223 (1173)
+|+..+.++..+
T Consensus 96 eaI~~Lqra~sl 107 (284)
T KOG4642|consen 96 EAIKVLQRAYSL 107 (284)
T ss_pred HHHHHHHHHHHH
Confidence 888888888554
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.00032 Score=50.44 Aligned_cols=32 Identities=22% Similarity=0.386 Sum_probs=26.9
Q ss_pred HHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHH
Q 045024 407 LIRGLQLDVSLADAWAHIGKLYGEVGEKKLAR 438 (1173)
Q Consensus 407 ~~kal~l~p~~~~a~~~Lg~~y~~~g~~e~A~ 438 (1173)
|+++++++|+++.+|+++|.+|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 67888888888888888888888888888875
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.74 Score=52.28 Aligned_cols=230 Identities=10% Similarity=-0.010 Sum_probs=141.5
Q ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhHHHHhHHHHHHhcCCHHHHHHHHHHHHhcCCc
Q 045024 406 ALIRGLQLDVSLADAWAHIGKLYGEVGEKKLARQAFDSARSIDPSLALPWAGMSADVQASESLVDDAFESCLRAVQILPL 485 (1173)
Q Consensus 406 a~~kal~l~p~~~~a~~~Lg~~y~~~g~~e~A~~~f~~al~~~P~~~~a~~~l~a~~~~~~g~~~eA~~~~~~al~~~p~ 485 (1173)
.+++++..-|-.+++|+.........++-+.|+..-+++....|. .... ++..|....+.++-...|++..+.-.
T Consensus 290 ~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~sps---L~~~-lse~yel~nd~e~v~~~fdk~~q~L~- 364 (660)
T COG5107 290 IHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPS---LTMF-LSEYYELVNDEEAVYGCFDKCTQDLK- 364 (660)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCc---hhee-HHHHHhhcccHHHHhhhHHHHHHHHH-
Confidence 478888888889999999999999999999999999998877776 2233 56577666777666667776554200
Q ss_pred hHHHHHHHHHHHH---hCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCCCCCCC
Q 045024 486 AEFQIGLAKLAKL---SGHLSSSQVFGAIQQAIQRGPHYPESHNLYGLVCEARSDYQAAVVSYRLARYAISSSSGTVPNS 562 (1173)
Q Consensus 486 ~~~~~~la~l~~~---~g~~~~~~A~~~l~~al~~~P~~~~a~~~lg~i~~~~g~~~~A~~~~~kAl~l~~~~pe~~~~~ 562 (1173)
..+..+..... .++..+.+ +..+.+......++...-..-.+..-.+.|..+|.++.+.- .. .
T Consensus 365 --r~ys~~~s~~~s~~D~N~e~~~-----Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~-~~------~ 430 (660)
T COG5107 365 --RKYSMGESESASKVDNNFEYSK-----ELLLKRINKLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEG-IV------G 430 (660)
T ss_pred --HHHhhhhhhhhccccCCccccH-----HHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccC-CC------C
Confidence 00111111101 11111111 11122222345556555565666677888999998885331 11 1
Q ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHhhhccccccchhhhhHH
Q 045024 563 HFQDISINLARSLSRAGNALDAVRECESLERQGMLDAEVLQVYAFSLWQLGKYDLALSMARNLASSVSAMEQSSAAASVS 642 (1173)
Q Consensus 563 ~~~~~~~~La~~~~~~g~~~eAi~~~~~~~~~~p~~~~~~~~la~a~~~~g~~~eA~~~~~~aL~~~p~~~~~~~~~~~~ 642 (1173)
+..-++..... +...|++.-|-..|+--+...|+++.-....-.-+...|+-+.|...|++.++..... ....++-
T Consensus 431 h~vyi~~A~~E-~~~~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~inde~naraLFetsv~r~~~~---q~k~iy~ 506 (660)
T COG5107 431 HHVYIYCAFIE-YYATGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRINDEENARALFETSVERLEKT---QLKRIYD 506 (660)
T ss_pred cceeeeHHHHH-HHhcCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHHHHHh---hhhHHHH
Confidence 11112222222 3467899999999999998999988766677777889999999999999887744311 1123333
Q ss_pred HHHHHHHHhcChhhhh
Q 045024 643 FICRLLYHISGLDSTI 658 (1173)
Q Consensus 643 ~la~l~~~~g~~~~A~ 658 (1173)
.+..--...|....+.
T Consensus 507 kmi~YEs~~G~lN~v~ 522 (660)
T COG5107 507 KMIEYESMVGSLNNVY 522 (660)
T ss_pred HHHHHHHhhcchHHHH
Confidence 3334444456655554
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.13 E-value=1.3 Score=55.04 Aligned_cols=30 Identities=20% Similarity=0.140 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 045024 324 AISSKSSYQRALYLAPWQANIYTDIAITSD 353 (1173)
Q Consensus 324 ~~~A~~~~~~al~l~p~~~~~~~~la~~~~ 353 (1173)
+++-+..++.++.+...+...+..++.+|.
T Consensus 1295 FeElIsl~Ea~LGLERAHMgmfTELaiLYs 1324 (1666)
T KOG0985|consen 1295 FEELISLLEAGLGLERAHMGMFTELAILYS 1324 (1666)
T ss_pred HHHHHHHHHhhhchhHHHHHHHHHHHHHHH
Confidence 445555555555555555555555555554
|
|
| >KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.0013 Score=68.04 Aligned_cols=82 Identities=26% Similarity=0.246 Sum_probs=36.5
Q ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 045024 71 SIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQ 150 (1173)
Q Consensus 71 ~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~ 150 (1173)
...|+.|+.+|.++|.++|..+..+...+.++++..+++.+.....+++++.|+...+.+.+|........|++|+..++
T Consensus 23 ~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~Lq 102 (284)
T KOG4642|consen 23 PKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQ 102 (284)
T ss_pred hhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHHHH
Confidence 33444444444444444444444444444444444444444444444444444444444444444444444444444444
Q ss_pred HH
Q 045024 151 HA 152 (1173)
Q Consensus 151 ~a 152 (1173)
++
T Consensus 103 ra 104 (284)
T KOG4642|consen 103 RA 104 (284)
T ss_pred HH
Confidence 44
|
|
| >KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.00079 Score=76.69 Aligned_cols=108 Identities=23% Similarity=0.282 Sum_probs=96.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCh
Q 045024 131 RLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNF 210 (1173)
Q Consensus 131 ~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~ 210 (1173)
.-+.-.+..++++.|+..|.++++++|+++..+.+.+..+.+.+++..|+..+.++++.+|....+++..|.+....+++
T Consensus 9 ~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~ 88 (476)
T KOG0376|consen 9 NEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEF 88 (476)
T ss_pred hHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHH
Confidence 34566777889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCHHHHHHHHHHH
Q 045024 211 RKGVEQFQLALKISSENVSAHYGLASGL 238 (1173)
Q Consensus 211 ~~A~~~~~~al~~~p~~~~a~~~la~~~ 238 (1173)
.+|...|+......|+++.+...+..+-
T Consensus 89 ~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~ 116 (476)
T KOG0376|consen 89 KKALLDLEKVKKLAPNDPDATRKIDECN 116 (476)
T ss_pred HHHHHHHHHhhhcCcCcHHHHHHHHHHH
Confidence 9999999999999999988766554443
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.0011 Score=47.74 Aligned_cols=34 Identities=26% Similarity=0.489 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 045024 418 ADAWAHIGKLYGEVGEKKLARQAFDSARSIDPSL 451 (1173)
Q Consensus 418 ~~a~~~Lg~~y~~~g~~e~A~~~f~~al~~~P~~ 451 (1173)
+.+|+.+|.+|..+|++++|+..|+++++++|++
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 4689999999999999999999999999999974
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.051 Score=56.70 Aligned_cols=166 Identities=15% Similarity=0.103 Sum_probs=119.4
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCH------HHHHHHHHHHHHCCCHHHHHHHHHHHHhh-----CCCcH
Q 045024 58 VAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDS------VSGEALCELLEHGGKESLEVVVCREASDK-----SPRAF 126 (1173)
Q Consensus 58 ~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~------~a~~~La~~~~~~g~~~~A~~~~~~al~~-----~p~~~ 126 (1173)
..+..-+.+|.. .+++++|..++.++++-..++. .++...+.+......+.++..+++++... .|+..
T Consensus 32 s~yekAAvafRn-Ak~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtA 110 (308)
T KOG1585|consen 32 SLYEKAAVAFRN-AKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTA 110 (308)
T ss_pred HHHHHHHHHHHh-hccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchH
Confidence 344455677788 9999999999999986544432 23666677778888999999999999765 34433
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCh
Q 045024 127 WAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTS------PHLWEALGLAYHRLGMFSAAIKSYGRAIEL------DDTSI 194 (1173)
Q Consensus 127 ~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~~ 194 (1173)
..-...+--.....++++|++.|++++.+-..+ .+.+...++++.+...+++|-..+.+-... .++..
T Consensus 111 AmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~ 190 (308)
T KOG1585|consen 111 AMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQC 190 (308)
T ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHH
Confidence 333344444567788999999999998764322 445667889999999999998888764432 23334
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhhc
Q 045024 195 FPLLESGNIFLMLGNFRKGVEQFQLALKIS 224 (1173)
Q Consensus 195 ~a~~~la~~~~~~g~~~~A~~~~~~al~~~ 224 (1173)
..+.....+|....+|..|...|+..-++.
T Consensus 191 k~~va~ilv~L~~~Dyv~aekc~r~~~qip 220 (308)
T KOG1585|consen 191 KAYVAAILVYLYAHDYVQAEKCYRDCSQIP 220 (308)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHhcchhcCc
Confidence 455566666777789999999999877653
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.082 Score=60.27 Aligned_cols=171 Identities=10% Similarity=0.008 Sum_probs=125.6
Q ss_pred CHHHHHHHHHHHHHccCCHHHHHHHHHHHHhh----CCCCHHHHHHHHHHHHH---CCCHHHHHHHHHH-HHhhCCCcHH
Q 045024 56 NAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSL----SPDDSVSGEALCELLEH---GGKESLEVVVCRE-ASDKSPRAFW 127 (1173)
Q Consensus 56 ~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~----~p~~~~a~~~La~~~~~---~g~~~~A~~~~~~-al~~~p~~~~ 127 (1173)
+++....+-.+|.. ..+|+.-++..+..-.+ -++...+.+.+|.++.+ .|+.++|+..+.. .....+.+++
T Consensus 140 s~div~~lllSyRd-iqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d 218 (374)
T PF13281_consen 140 SPDIVINLLLSYRD-IQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPD 218 (374)
T ss_pred ChhHHHHHHHHhhh-hhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChH
Confidence 35566777778999 99999998888887666 45566778889999988 8999999999999 4555667899
Q ss_pred HHHHHHHHHHH---------cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--------Hh-
Q 045024 128 AFRRLGYLQLH---------HKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAI--------EL- 189 (1173)
Q Consensus 128 a~~~la~~~~~---------~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al--------~~- 189 (1173)
.+..+|.+|-. ....++|+..|.++.+.+|+. ..=.+++.++...|.-.+.....++.. +.
T Consensus 219 ~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~-Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg 297 (374)
T PF13281_consen 219 TLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDY-YSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKG 297 (374)
T ss_pred HHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccc-cchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhc
Confidence 99999999853 235789999999999999753 333455556666665333332222221 11
Q ss_pred ---CCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCH
Q 045024 190 ---DDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENV 228 (1173)
Q Consensus 190 ---~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 228 (1173)
.-.+....-.++.+..-.|++++|++.++++++..|...
T Consensus 298 ~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W 339 (374)
T PF13281_consen 298 SLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAW 339 (374)
T ss_pred cccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcch
Confidence 112445556778888889999999999999999876654
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.96 E-value=1.8 Score=53.84 Aligned_cols=182 Identities=18% Similarity=0.145 Sum_probs=126.5
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhHHHHhHHHHHHhcCCHHHHHHHHHHHHhcCCchHHHHHHHHH
Q 045024 416 SLADAWAHIGKLYGEVGEKKLARQAFDSARSIDPSLALPWAGMSADVQASESLVDDAFESCLRAVQILPLAEFQIGLAKL 495 (1173)
Q Consensus 416 ~~~~a~~~Lg~~y~~~g~~e~A~~~f~~al~~~P~~~~a~~~l~a~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~la~l 495 (1173)
+.|.+|..+|.+..+.|...+|++.|-++ +++..+.. ...+..+.|.|++-+.++.-+.+....+.....+...
T Consensus 1102 n~p~vWsqlakAQL~~~~v~dAieSyika-----dDps~y~e-Vi~~a~~~~~~edLv~yL~MaRkk~~E~~id~eLi~A 1175 (1666)
T KOG0985|consen 1102 NEPAVWSQLAKAQLQGGLVKDAIESYIKA-----DDPSNYLE-VIDVASRTGKYEDLVKYLLMARKKVREPYIDSELIFA 1175 (1666)
T ss_pred CChHHHHHHHHHHHhcCchHHHHHHHHhc-----CCcHHHHH-HHHHHHhcCcHHHHHHHHHHHHHhhcCccchHHHHHH
Confidence 46899999999999999999999999775 45556666 5667789999999999998887764444333333333
Q ss_pred HHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHH
Q 045024 496 AKLSGHLSSSQVFGAIQQAIQRGPHYPESHNLYGLVCEARSDYQAAVVSYRLARYAISSSSGTVPNSHFQDISINLARSL 575 (1173)
Q Consensus 496 ~~~~g~~~~~~A~~~l~~al~~~P~~~~a~~~lg~i~~~~g~~~~A~~~~~kAl~l~~~~pe~~~~~~~~~~~~~La~~~ 575 (1173)
+...+++. .++..+. .|+.... ...|+-++..|.|+.|.-.|..+- -+..|+..+
T Consensus 1176 yAkt~rl~------elE~fi~-gpN~A~i-~~vGdrcf~~~~y~aAkl~y~~vS-----------------N~a~La~TL 1230 (1666)
T KOG0985|consen 1176 YAKTNRLT------ELEEFIA-GPNVANI-QQVGDRCFEEKMYEAAKLLYSNVS-----------------NFAKLASTL 1230 (1666)
T ss_pred HHHhchHH------HHHHHhc-CCCchhH-HHHhHHHhhhhhhHHHHHHHHHhh-----------------hHHHHHHHH
Confidence 33344321 2233322 3554443 667888888999999999988551 366788888
Q ss_pred HhcCCHHHHHHHHHHHHHcC---------CC----------------CHHHHHHHHHHHHHcCChHHHHHHHHHHhhh
Q 045024 576 SRAGNALDAVRECESLERQG---------ML----------------DAEVLQVYAFSLWQLGKYDLALSMARNLASS 628 (1173)
Q Consensus 576 ~~~g~~~eAi~~~~~~~~~~---------p~----------------~~~~~~~la~a~~~~g~~~eA~~~~~~aL~~ 628 (1173)
...|+|..|+...+++-... .+ +.+-+-.+..-|...|-++|-+..++.+|-.
T Consensus 1231 V~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGL 1308 (1666)
T KOG0985|consen 1231 VYLGEYQGAVDAARKANSTKTWKEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGL 1308 (1666)
T ss_pred HHHHHHHHHHHHhhhccchhHHHHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhch
Confidence 89999999998887763221 00 1122234566677888888888888887663
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.0018 Score=46.54 Aligned_cols=34 Identities=32% Similarity=0.597 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 045024 418 ADAWAHIGKLYGEVGEKKLARQAFDSARSIDPSL 451 (1173)
Q Consensus 418 ~~a~~~Lg~~y~~~g~~e~A~~~f~~al~~~P~~ 451 (1173)
+.+|+.+|.+|...|++++|++.|+++++++|++
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 4689999999999999999999999999999985
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.0068 Score=62.84 Aligned_cols=104 Identities=11% Similarity=0.090 Sum_probs=89.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCC----------HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 045024 126 FWAFRRLGYLQLHHKKWSEAVQSLQHAIRG--------YPTS----------PHLWEALGLAYHRLGMFSAAIKSYGRAI 187 (1173)
Q Consensus 126 ~~a~~~la~~~~~~g~~~~A~~~l~~al~~--------~p~~----------~~~~~~la~~~~~~g~~~~A~~~~~~al 187 (1173)
..++..-|+-++..|+|.+|...|+.++.. .|.. ...+.++..++...|+|-++++....++
T Consensus 178 v~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL 257 (329)
T KOG0545|consen 178 VPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEIL 257 (329)
T ss_pred hHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHH
Confidence 456677788888889999888888887642 3433 4567889999999999999999999999
Q ss_pred HhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCHH
Q 045024 188 ELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVS 229 (1173)
Q Consensus 188 ~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 229 (1173)
...|.+..+++..|.+....=+.++|...|.++++++|.-..
T Consensus 258 ~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslas 299 (329)
T KOG0545|consen 258 RHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLAS 299 (329)
T ss_pred hcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHH
Confidence 999999999999999999999999999999999999987543
|
|
| >KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.0016 Score=74.23 Aligned_cols=99 Identities=14% Similarity=0.107 Sum_probs=48.5
Q ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 045024 71 SIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQ 150 (1173)
Q Consensus 71 ~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~ 150 (1173)
.++++.|+..|.++++++|+....+-..+..+.+.+++..|+.-+.++++.+|....+|+..|......+++.+|...|+
T Consensus 17 ~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~A~~~l~ 96 (476)
T KOG0376|consen 17 DKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKKALLDLE 96 (476)
T ss_pred cchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHHHHHHHH
Confidence 44444444455555554444444444444444444445555555555555555444445555555555555555555555
Q ss_pred HHHHhCCCCHHHHHHHHHH
Q 045024 151 HAIRGYPTSPHLWEALGLA 169 (1173)
Q Consensus 151 ~al~~~p~~~~~~~~la~~ 169 (1173)
......|+++.+...+..+
T Consensus 97 ~~~~l~Pnd~~~~r~~~Ec 115 (476)
T KOG0376|consen 97 KVKKLAPNDPDATRKIDEC 115 (476)
T ss_pred HhhhcCcCcHHHHHHHHHH
Confidence 5555555554444444333
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.057 Score=58.44 Aligned_cols=160 Identities=18% Similarity=0.085 Sum_probs=112.8
Q ss_pred HHHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHH-HHHHH
Q 045024 22 PSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSG-EALCE 100 (1173)
Q Consensus 22 ~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~-~~La~ 100 (1173)
.+.-+..+.-....++ +.+|...|..++...|++.++...++.+|.. .|+.+.|...+...-....+..... .....
T Consensus 134 ~e~~~~~~~~~~~~e~-~~~a~~~~~~al~~~~~~~~~~~~la~~~l~-~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ 211 (304)
T COG3118 134 EEEALAEAKELIEAED-FGEAAPLLKQALQAAPENSEAKLLLAECLLA-AGDVEAAQAILAALPLQAQDKAAHGLQAQIE 211 (304)
T ss_pred HHHHHHHhhhhhhccc-hhhHHHHHHHHHHhCcccchHHHHHHHHHHH-cCChHHHHHHHHhCcccchhhHHHHHHHHHH
Confidence 4455666777777887 9999999999999999999999999999999 9999999988876422222211111 11223
Q ss_pred HHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHH
Q 045024 101 LLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYP--TSPHLWEALGLAYHRLGMFSA 178 (1173)
Q Consensus 101 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p--~~~~~~~~la~~~~~~g~~~~ 178 (1173)
.+.+.....+. ..+++.+..+|++..+.+.++..+...|+.++|.+.+-..++.+- .+..+...+-.++...|.-+.
T Consensus 212 ll~qaa~~~~~-~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp 290 (304)
T COG3118 212 LLEQAAATPEI-QDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADP 290 (304)
T ss_pred HHHHHhcCCCH-HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCH
Confidence 33333333322 234555677999999999999999999999999999998888754 345555666666655554444
Q ss_pred HHHHHH
Q 045024 179 AIKSYG 184 (1173)
Q Consensus 179 A~~~~~ 184 (1173)
+...++
T Consensus 291 ~~~~~R 296 (304)
T COG3118 291 LVLAYR 296 (304)
T ss_pred HHHHHH
Confidence 444343
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.0019 Score=46.45 Aligned_cols=33 Identities=24% Similarity=0.375 Sum_probs=31.0
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 045024 511 IQQAIQRGPHYPESHNLYGLVCEARSDYQAAVV 543 (1173)
Q Consensus 511 l~~al~~~P~~~~a~~~lg~i~~~~g~~~~A~~ 543 (1173)
|+++++.+|+++.+|+.+|.+|...|++++|++
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 688999999999999999999999999999963
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.026 Score=56.40 Aligned_cols=101 Identities=17% Similarity=0.087 Sum_probs=73.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHhhcC--CCCCC-----------CCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 045024 528 YGLVCEARSDYQAAVVSYRLARYAISSS--SGTVP-----------NSHFQDISINLARSLSRAGNALDAVRECESLERQ 594 (1173)
Q Consensus 528 lg~i~~~~g~~~~A~~~~~kAl~l~~~~--pe~~~-----------~~~~~~~~~~La~~~~~~g~~~eAi~~~~~~~~~ 594 (1173)
.|......|+.+.++..+++++.+.... ++... ...+..+...++..+...|++++|+..+++++..
T Consensus 12 ~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~ 91 (146)
T PF03704_consen 12 EARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRALAL 91 (146)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc
Confidence 3555566677788888888777655433 11110 1223456666888889999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHhhh
Q 045024 595 GMLDAEVLQVYAFSLWQLGKYDLALSMARNLASS 628 (1173)
Q Consensus 595 ~p~~~~~~~~la~a~~~~g~~~eA~~~~~~aL~~ 628 (1173)
+|.+..++..+..+|...|+..+|+..|++....
T Consensus 92 dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~ 125 (146)
T PF03704_consen 92 DPYDEEAYRLLMRALAAQGRRAEALRVYERYRRR 125 (146)
T ss_dssp STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999988553
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.88 Score=56.11 Aligned_cols=150 Identities=21% Similarity=0.169 Sum_probs=88.8
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc----cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Q 045024 40 EKAAEHFVIAAKLNPQNAVAFRYLGHYYTRF----SIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVC 115 (1173)
Q Consensus 40 ~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~----~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~~g~~~~A~~~~ 115 (1173)
..|..+++.+.+ -.+..+.+.+|.+|..- ..|.+.|+.+|+.+.+. +
T Consensus 229 ~~a~~~~~~~a~--~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~---------------------------~ 279 (552)
T KOG1550|consen 229 SEAFKYYREAAK--LGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAES---------------------------F 279 (552)
T ss_pred hHHHHHHHHHHh--hcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHH---------------------------H
Confidence 345555555543 23455666666666550 23566666666666542 1
Q ss_pred HHHHhhCCCcHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHH
Q 045024 116 REASDKSPRAFWAFRRLGYLQLHHK-----KWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLG---MFSAAIKSYGRAI 187 (1173)
Q Consensus 116 ~~al~~~p~~~~a~~~la~~~~~~g-----~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g---~~~~A~~~~~~al 187 (1173)
.++.... .+.+.+.+|.+|.+.. ++..|+.+|.++-.. +++.+.+.+|.++..-. ++..|.++|..+.
T Consensus 280 ~~~a~~~--~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~--g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa 355 (552)
T KOG1550|consen 280 KKAATKG--LPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAEL--GNPDAQYLLGVLYETGTKERDYRRAFEYYSLAA 355 (552)
T ss_pred HHHHhhc--CCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhc--CCchHHHHHHHHHHcCCccccHHHHHHHHHHHH
Confidence 1111121 3445566666666532 566777777777655 34556666777776544 5667777777776
Q ss_pred HhCCCChHHHHHHHHHHHHc----CChHHHHHHHHHHHhhc
Q 045024 188 ELDDTSIFPLLESGNIFLML----GNFRKGVEQFQLALKIS 224 (1173)
Q Consensus 188 ~~~p~~~~a~~~la~~~~~~----g~~~~A~~~~~~al~~~ 224 (1173)
.. .+..+.+.++.+|..- -+...|..+|.++.+..
T Consensus 356 ~~--G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g 394 (552)
T KOG1550|consen 356 KA--GHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG 394 (552)
T ss_pred Hc--CChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc
Confidence 53 4667777777776542 35677777887777765
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.25 Score=50.35 Aligned_cols=95 Identities=16% Similarity=0.152 Sum_probs=49.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHH
Q 045024 130 RRLGYLQLHHKKWSEAVQSLQHAIRGYPTS---PHLWEALGLAYHRLGMFSAAIKSYGRAIELDDT-SIFPLLESGNIFL 205 (1173)
Q Consensus 130 ~~la~~~~~~g~~~~A~~~l~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~la~~~~ 205 (1173)
..++..+...|++++|+..++.++....+. .-+-.+++.+...+|.+++|+..++..-. ++ ....-...|.++.
T Consensus 93 L~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~--~~w~~~~~elrGDill 170 (207)
T COG2976 93 LELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKE--ESWAAIVAELRGDILL 170 (207)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccc--ccHHHHHHHHhhhHHH
Confidence 445555556666666666666555332211 22344556666666666666665554321 11 1122344566666
Q ss_pred HcCChHHHHHHHHHHHhhcCC
Q 045024 206 MLGNFRKGVEQFQLALKISSE 226 (1173)
Q Consensus 206 ~~g~~~~A~~~~~~al~~~p~ 226 (1173)
..|+-++|+..|+++++..++
T Consensus 171 ~kg~k~~Ar~ay~kAl~~~~s 191 (207)
T COG2976 171 AKGDKQEARAAYEKALESDAS 191 (207)
T ss_pred HcCchHHHHHHHHHHHHccCC
Confidence 666666666666666665533
|
|
| >KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.65 E-value=2 Score=49.87 Aligned_cols=95 Identities=8% Similarity=-0.057 Sum_probs=70.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCch-HHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 045024 459 SADVQASESLVDDAFESCLRAVQILPLA-EFQIGLAKLAKLSGHLSSSQVFGAIQQAIQRGPHYPESHNLYGLVCEARSD 537 (1173)
Q Consensus 459 ~a~~~~~~g~~~eA~~~~~~al~~~p~~-~~~~~la~l~~~~g~~~~~~A~~~l~~al~~~P~~~~a~~~lg~i~~~~g~ 537 (1173)
....+.+.|-+.+|...|.+...+.|.. ..+.....+...+......-+...|+.++.....++..|...-..-...|.
T Consensus 466 ~l~~~~e~~~~~~ark~y~~l~~lpp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg~d~~lw~~y~~~e~~~g~ 545 (568)
T KOG2396|consen 466 YLDWAYESGGYKKARKVYKSLQELPPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFGADSDLWMDYMKEELPLGR 545 (568)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhCCCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhCCChHHHHHHHHhhccCCC
Confidence 3445667888999999999888887743 455555555544333334567889999998888899999877777778999
Q ss_pred HHHHHHHHHHHHHHhh
Q 045024 538 YQAAVVSYRLARYAIS 553 (1173)
Q Consensus 538 ~~~A~~~~~kAl~l~~ 553 (1173)
.+.+-.+|.+|++.++
T Consensus 546 ~en~~~~~~ra~ktl~ 561 (568)
T KOG2396|consen 546 PENCGQIYWRAMKTLQ 561 (568)
T ss_pred cccccHHHHHHHHhhC
Confidence 9999999999976654
|
|
| >KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.64 E-value=2 Score=49.85 Aligned_cols=442 Identities=12% Similarity=0.028 Sum_probs=202.9
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCC-hHHHHHHHHHHHh
Q 045024 144 EAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGN-FRKGVEQFQLALK 222 (1173)
Q Consensus 144 ~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~-~~~A~~~~~~al~ 222 (1173)
.-...|+.+....+.|+..|........+.+.+.+-...|.+++...|+++..|..-|.-.+..+. .+.|...|.++++
T Consensus 89 rIv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR 168 (568)
T KOG2396|consen 89 RIVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLR 168 (568)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhh
Confidence 345566677777777777777777766667767777777777777777777777777776666555 7777777777777
Q ss_pred hcCCCHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHhhhcCChHHHHHHhchHHHHHh-hccc-hhhhhh
Q 045024 223 ISSENVSAHYGLASGLLGLAKQCINLGAFRWGASLLEDACKVAEANTRLAGNMSCIWKLHGDIQLTYA-KCFP-WAEERQ 300 (1173)
Q Consensus 223 ~~p~~~~a~~~la~~~~~l~~~~~a~g~~~~A~~~l~~Al~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~-~~~~~~ 300 (1173)
.+|+++..|...-..-+.......+.. ............-...|....... .... ..+...
T Consensus 169 ~npdsp~Lw~eyfrmEL~~~~Kl~~rr-----------------~~~g~~~~~~~~eie~ge~~~~~~~~s~~~~~~~~k 231 (568)
T KOG2396|consen 169 FNPDSPKLWKEYFRMELMYAEKLRNRR-----------------EELGLDSSDKDEEIERGELAWINYANSVDIIKGAVK 231 (568)
T ss_pred cCCCChHHHHHHHHHHHHHHHHHHHHH-----------------HHhccccchhHHHHHHHHHHHHhhccchhhhhcchh
Confidence 777777666543332222111000000 000000000000000000000000 0000 000000
Q ss_pred chhhhhhhhhhhhHhhHhhhhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHh---hHHH---hhhhhh--hhhHHH
Q 045024 301 SLEFDVETFSASIVSWKTTCLMAAISSKSSYQRALYLAPWQANIYTDIAITSDLIY---SLNE---AYGHYQ--SAWHVS 372 (1173)
Q Consensus 301 ~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g---~~~e---A~~~~~--~~~~~A 372 (1173)
..+ .+ ... .....+ +--...++......|.+|..|..++.-....- +... -..... ..-...
T Consensus 232 ~~e--~~---~~~---~~d~~k--el~k~i~d~~~~~~~~np~~~~~laqr~l~i~~~tdl~~~~~~~~~~~~~~k~s~~ 301 (568)
T KOG2396|consen 232 SVE--LS---VAE---KFDFLK--ELQKNIIDDLQSKAPDNPLLWDDLAQRELEILSQTDLQHTDNQAKAVEVGSKESRC 301 (568)
T ss_pred hcc--hH---HHH---HHHHHH--HHHHHHHHHHhccCCCCCccHHHHHHHHHHHHHHhhccchhhhhhchhcchhHHHH
Confidence 000 00 000 000000 01112233334456777777777665433211 1000 000000 001112
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHHhhc----ccH-H---HHHHHHHHH---hcCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 045024 373 EKMALGALLLEGDNCQFWVTLGCLSN----YNG-L---KQHALIRGL---QLDVSLADAWAHIGKLYGEVGEKKLARQAF 441 (1173)
Q Consensus 373 ~k~~~~al~~~p~~~~~~~~Lg~~~~----~~~-~---a~~a~~kal---~l~p~~~~a~~~Lg~~y~~~g~~e~A~~~f 441 (1173)
..+++.++..-|.....-..++.+.. -.+ . -...++++. .+.+..+.-+..++.++.......++...+
T Consensus 302 ~~v~ee~v~~l~t~sm~e~YI~~~lE~~~~~r~~~I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~~r~~a~~l 381 (568)
T KOG2396|consen 302 CAVYEEAVKTLPTESMWECYITFCLERFTFLRGKRILHTMCVFRKAHELKLLSECLYKQYSVLLLCLNTLNEAREVAVKL 381 (568)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhccchHhHHHHHh
Confidence 23334444333332211011111110 111 0 111233333 345667777777787777776654443333
Q ss_pred H-HHHhhCCCChhHHHHhHHHHHHhcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCCChHHHHHHHHHHH-Hh-C
Q 045024 442 D-SARSIDPSLALPWAGMSADVQASESLVDDAFESCLRAVQILPLAEFQIGLAKLAKLSGHLSSSQVFGAIQQAI-QR-G 518 (1173)
Q Consensus 442 ~-~al~~~P~~~~a~~~l~a~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~la~l~~~~g~~~~~~A~~~l~~al-~~-~ 518 (1173)
. .. -.++...|...+...-....+++--.......++..+..+....+.... .++.....-...+-.++ .. .
T Consensus 382 ~~e~---f~~s~k~~~~kl~~~~~s~sD~q~~f~~l~n~~r~~~~s~~~~~w~s~~--~~dsl~~~~~~~Ii~a~~s~~~ 456 (568)
T KOG2396|consen 382 TTEL---FRDSGKMWQLKLQVLIESKSDFQMLFEELFNHLRKQVCSELLISWASAS--EGDSLQEDTLDLIISALLSVIG 456 (568)
T ss_pred hHHH---hcchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcchhHHHHHHHh--hccchhHHHHHHHHHHHHHhcC
Confidence 2 33 3355566665333121122232222222222333333333333332222 22211111122222222 22 3
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHH---HHhcCCHHHHHHHHHHHHHcC
Q 045024 519 PHYPESHNLYGLVCEARSDYQAAVVSYRLARYAISSSSGTVPNSHFQDISINLARS---LSRAGNALDAVRECESLERQG 595 (1173)
Q Consensus 519 P~~~~a~~~lg~i~~~~g~~~~A~~~~~kAl~l~~~~pe~~~~~~~~~~~~~La~~---~~~~g~~~eAi~~~~~~~~~~ 595 (1173)
|+....-..+-..+.+.|-+.+|...|.+.. ...|-+ ...+..+..+ ....| ...+.++|+.++...
T Consensus 457 ~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~---~lpp~s------l~l~r~miq~e~~~~sc~-l~~~r~~yd~a~~~f 526 (568)
T KOG2396|consen 457 ADSVTLKSKYLDWAYESGGYKKARKVYKSLQ---ELPPFS------LDLFRKMIQFEKEQESCN-LANIREYYDRALREF 526 (568)
T ss_pred CceeehhHHHHHHHHHhcchHHHHHHHHHHH---hCCCcc------HHHHHHHHHHHhhHhhcC-chHHHHHHHHHHHHh
Confidence 4444555566677888899999999998763 222211 1122222222 22223 778888999988765
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHhh
Q 045024 596 MLDAEVLQVYAFSLWQLGKYDLALSMARNLAS 627 (1173)
Q Consensus 596 p~~~~~~~~la~a~~~~g~~~eA~~~~~~aL~ 627 (1173)
..+++.|..+-..-...|..+.+-..|.++++
T Consensus 527 g~d~~lw~~y~~~e~~~g~~en~~~~~~ra~k 558 (568)
T KOG2396|consen 527 GADSDLWMDYMKEELPLGRPENCGQIYWRAMK 558 (568)
T ss_pred CCChHHHHHHHHhhccCCCcccccHHHHHHHH
Confidence 58888887777677788999988888888876
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=96.56 E-value=2.1 Score=49.04 Aligned_cols=53 Identities=15% Similarity=0.161 Sum_probs=44.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 045024 572 ARSLSRAGNALDAVRECESLERQGMLDAEVLQVYAFSLWQLGKYDLALSMARNL 625 (1173)
Q Consensus 572 a~~~~~~g~~~eAi~~~~~~~~~~p~~~~~~~~la~a~~~~g~~~eA~~~~~~a 625 (1173)
|..+...|+|.++.-...=+.+..| ++.++..+|.+.+..++|++|..++..+
T Consensus 469 AEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 469 AEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 4456678999999866666677888 8899999999999999999999998865
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.0039 Score=44.80 Aligned_cols=32 Identities=41% Similarity=0.622 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCC
Q 045024 58 VAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPD 90 (1173)
Q Consensus 58 ~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~ 90 (1173)
.+|+.+|.++.. +|++++|+..|+++++++|+
T Consensus 2 ~~~~~~g~~~~~-~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQ-LGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHH-TT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHH-hCCchHHHHHHHHHHHHCcC
Confidence 455566666666 66666666666666666554
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.0054 Score=43.93 Aligned_cols=33 Identities=30% Similarity=0.611 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCC
Q 045024 58 VAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDD 91 (1173)
Q Consensus 58 ~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~ 91 (1173)
.+++.+|.++.. .|++++|+.+|+++++++|++
T Consensus 2 ~~~~~lg~~~~~-~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQ-LGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHH-TT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHH-hCCHHHHHHHHHHHHHHCcCC
Confidence 455556666666 666666666666666665543
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.055 Score=54.02 Aligned_cols=62 Identities=16% Similarity=0.124 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 045024 161 HLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALK 222 (1173)
Q Consensus 161 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~ 222 (1173)
.+...++..+...|++++|+..+++++..+|.+..++..+..+|...|+..+|+..|+++..
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 45667788888899999999999999999999999999999999999999999998888754
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.32 Score=59.93 Aligned_cols=171 Identities=20% Similarity=0.189 Sum_probs=123.1
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHc----cCcHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHccC-----
Q 045024 7 LLLQLEDSLEANPDDPSLHLDLGLHLWEN----SESKEKAAEHFVIAAKL-----NPQNAVAFRYLGHYYTRFSI----- 72 (1173)
Q Consensus 7 Ai~~l~~al~~~P~~~~~~~~lg~~~~~~----~~~~~~A~~~~~~al~~-----~p~~~~a~~~lg~~~~~~~g----- 72 (1173)
|...++.+.+. .+..+.+.+|.+|+.- .+|.+.|+.+|..+.+. .-..+.+.+.+|.+|.+ ..
T Consensus 231 a~~~~~~~a~~--g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~-g~~~~~~ 307 (552)
T KOG1550|consen 231 AFKYYREAAKL--GHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQ-GLGVEKI 307 (552)
T ss_pred HHHHHHHHHhh--cchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhc-CCCCccc
Confidence 46666666543 4677888888888654 24589999999998761 11256688899999998 43
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH----cCCHHHH
Q 045024 73 DTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGG---KESLEVVVCREASDKSPRAFWAFRRLGYLQLH----HKKWSEA 145 (1173)
Q Consensus 73 ~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~~g---~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~----~g~~~~A 145 (1173)
+++.|..+|.++-+.. ++.+.+.+|.++.... ++..|..+|..+... .+..+.+.++.+|.. ..+...|
T Consensus 308 d~~~A~~~~~~aA~~g--~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~~A~~~la~~y~~G~gv~r~~~~A 383 (552)
T KOG1550|consen 308 DYEKALKLYTKAAELG--NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA--GHILAIYRLALCYELGLGVERNLELA 383 (552)
T ss_pred cHHHHHHHHHHHHhcC--CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc--CChHHHHHHHHHHHhCCCcCCCHHHH
Confidence 6788999999988764 5677788888886655 678999999998764 467788888888864 3588999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHH
Q 045024 146 VQSLQHAIRGYPTSPHLWEALGLAYHRL-GMFSAAIKSYGRA 186 (1173)
Q Consensus 146 ~~~l~~al~~~p~~~~~~~~la~~~~~~-g~~~~A~~~~~~a 186 (1173)
..++.++.+.+ ++.+...++..+... ++++.+.-.+...
T Consensus 384 ~~~~k~aA~~g--~~~A~~~~~~~~~~g~~~~~~~~~~~~~~ 423 (552)
T KOG1550|consen 384 FAYYKKAAEKG--NPSAAYLLGAFYEYGVGRYDTALALYLYL 423 (552)
T ss_pred HHHHHHHHHcc--ChhhHHHHHHHHHHccccccHHHHHHHHH
Confidence 99999998887 444455555444332 6665555544433
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=96.48 E-value=1.4 Score=49.25 Aligned_cols=227 Identities=13% Similarity=-0.000 Sum_probs=142.7
Q ss_pred HHccCcHHHHHHHHHHHHHhC----CCC----HHHHHHHHHHHHHccC-CHHHHHHHHHHHHhh----CC---CCH----
Q 045024 33 WENSESKEKAAEHFVIAAKLN----PQN----AVAFRYLGHYYTRFSI-DTQRAIKCYQRAVSL----SP---DDS---- 92 (1173)
Q Consensus 33 ~~~~~~~~~A~~~~~~al~~~----p~~----~~a~~~lg~~~~~~~g-~~~eA~~~~~~al~~----~p---~~~---- 92 (1173)
+.+|+ ++.|..++.++-... |+. ...++..|..... .+ ++++|..+++++.++ .+ ..+
T Consensus 4 ~~~~~-~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~-~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~e 81 (278)
T PF08631_consen 4 WKQGD-LDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLS-KKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSE 81 (278)
T ss_pred hhhCC-HHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHH-cCCChHHHHHHHHHHHHHHHhhhhccccCCcHHH
Confidence 45666 899999998886543 332 3567888888888 88 999999999999887 21 111
Q ss_pred ---HHHHHHHHHHHHCCCHH---HHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-C--CHHHH
Q 045024 93 ---VSGEALCELLEHGGKES---LEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYP-T--SPHLW 163 (1173)
Q Consensus 93 ---~a~~~La~~~~~~g~~~---~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p-~--~~~~~ 163 (1173)
.++..++.+|...+.++ +|..+.+.+-...|+.+..+...-.+....++.+++.+.+.+++..-+ . +....
T Consensus 82 lr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~ 161 (278)
T PF08631_consen 82 LRLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSI 161 (278)
T ss_pred HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHH
Confidence 23777888888877654 555666666666788777776666666668999999999999987654 2 22222
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHH---HHHHHHcC--C------hHHHHHHHHHHHh--hcCCCH
Q 045024 164 EALGLAYHRLGMFSAAIKSYGRAIEL--DDTSIFPLLES---GNIFLMLG--N------FRKGVEQFQLALK--ISSENV 228 (1173)
Q Consensus 164 ~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~l---a~~~~~~g--~------~~~A~~~~~~al~--~~p~~~ 228 (1173)
.....-+. ......|...+...+.. .|.... +... ..++...+ + .+...+.++.+.+ ..|-.+
T Consensus 162 l~~i~~l~-~~~~~~a~~~ld~~l~~r~~~~~~~-~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~ 239 (278)
T PF08631_consen 162 LHHIKQLA-EKSPELAAFCLDYLLLNRFKSSEDQ-WLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSA 239 (278)
T ss_pred HHHHHHHH-hhCcHHHHHHHHHHHHHHhCCChhH-HHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCH
Confidence 22222222 34456677777776643 232211 2222 22222222 1 2222233332222 234455
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHH
Q 045024 229 SAHYGLASGLLGLAKQCINLGAFRWGASLLEDACK 263 (1173)
Q Consensus 229 ~a~~~la~~~~~l~~~~~a~g~~~~A~~~l~~Al~ 263 (1173)
.+...+-.++.+.|...+..++|..|...|+-++.
T Consensus 240 ~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al~ 274 (278)
T PF08631_consen 240 EAASAIHTLLWNKGKKHYKAKNYDEAIEWYELALH 274 (278)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH
Confidence 66666667788889999999999999999887663
|
It is also involved in sporulation []. |
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=96.47 E-value=1.5 Score=50.72 Aligned_cols=67 Identities=16% Similarity=0.276 Sum_probs=56.5
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----ChHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 045024 156 YPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDT----SIFPLLESGNIFLMLGNFRKGVEQFQLALK 222 (1173)
Q Consensus 156 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~----~~~a~~~la~~~~~~g~~~~A~~~~~~al~ 222 (1173)
.......+...+.+..+.|+++.|...+.++...++. .+.+.+..+.++...|+..+|+..++..+.
T Consensus 142 ~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 142 PEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred hhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3355678899999999999999999999998876522 467778889999999999999999998887
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.086 Score=63.39 Aligned_cols=152 Identities=16% Similarity=0.102 Sum_probs=101.2
Q ss_pred cCCHHHHHHHHHHHHhhCC-CCHHHH------HHHHHHH--H--HCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHc
Q 045024 71 SIDTQRAIKCYQRAVSLSP-DDSVSG------EALCELL--E--HGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHH 139 (1173)
Q Consensus 71 ~g~~~eA~~~~~~al~~~p-~~~~a~------~~La~~~--~--~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~ 139 (1173)
.||-+.++..+.++.+... ..+.+- +.....+ . ...+.+.|.+.+....+..|+.....+..|+++...
T Consensus 201 ~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~ 280 (468)
T PF10300_consen 201 SGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFLFFEGRLERLK 280 (468)
T ss_pred CCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHh
Confidence 5888888888888776321 112221 1111111 1 244567788888888888888888888888888888
Q ss_pred CCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHcCCh----
Q 045024 140 KKWSEAVQSLQHAIRGYPT----SPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTS-IFPLLESGNIFLMLGNF---- 210 (1173)
Q Consensus 140 g~~~~A~~~l~~al~~~p~----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~a~~~la~~~~~~g~~---- 210 (1173)
|+.++|++.|++++..... ..-.++.++.++..+++|++|...|.+..+.+.-+ ....+..|-++...|+.
T Consensus 281 g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~ 360 (468)
T PF10300_consen 281 GNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAK 360 (468)
T ss_pred cCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhh
Confidence 8888888888877743221 23356678888888888888888888887755443 33445667778888887
Q ss_pred ---HHHHHHHHHHHh
Q 045024 211 ---RKGVEQFQLALK 222 (1173)
Q Consensus 211 ---~~A~~~~~~al~ 222 (1173)
++|.+.|.++-.
T Consensus 361 ~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 361 EHKKEAEELFRKVPK 375 (468)
T ss_pred hhHHHHHHHHHHHHH
Confidence 666666666543
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.25 Score=56.40 Aligned_cols=173 Identities=13% Similarity=0.013 Sum_probs=121.3
Q ss_pred CHHHHHHHHHHHHHccCcHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHH--ccCCHHHHHHHHHHH-HhhCCCCHH
Q 045024 21 DPSLHLDLGLHLWENSESKEKAAEHFVIAAKL----NPQNAVAFRYLGHYYTR--FSIDTQRAIKCYQRA-VSLSPDDSV 93 (1173)
Q Consensus 21 ~~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~----~p~~~~a~~~lg~~~~~--~~g~~~eA~~~~~~a-l~~~p~~~~ 93 (1173)
+++....+-.+|....+ |+.-+...+..-.. -++.+.+.+.+|.++.+ ..|+.++|+..+..+ ....+.+++
T Consensus 140 s~div~~lllSyRdiqd-ydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d 218 (374)
T PF13281_consen 140 SPDIVINLLLSYRDIQD-YDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPD 218 (374)
T ss_pred ChhHHHHHHHHhhhhhh-HHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChH
Confidence 45666777777877776 88888888776555 34455566666666554 268999999999994 455677889
Q ss_pred HHHHHHHHHHHC---------CCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH-H-------h-
Q 045024 94 SGEALCELLEHG---------GKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAI-R-------G- 155 (1173)
Q Consensus 94 a~~~La~~~~~~---------g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al-~-------~- 155 (1173)
.+..+|.+|-.. ...++|+..|.++.+.+|+. ..-.+++.++...|...+....+++.. . .
T Consensus 219 ~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~-Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg 297 (374)
T PF13281_consen 219 TLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDY-YSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKG 297 (374)
T ss_pred HHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccc-cchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhc
Confidence 999999988321 24789999999999999754 333455666666665433332222222 1 1
Q ss_pred ---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH
Q 045024 156 ---YPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIF 195 (1173)
Q Consensus 156 ---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 195 (1173)
.-.+......++.+..-.|++++|++.++++++..|....
T Consensus 298 ~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W~ 340 (374)
T PF13281_consen 298 SLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAWE 340 (374)
T ss_pred cccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcchh
Confidence 1244556677888889999999999999999999877553
|
|
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.71 Score=57.14 Aligned_cols=249 Identities=14% Similarity=0.059 Sum_probs=155.5
Q ss_pred HHHHHHHHhCCC-----CHHHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCC--C-------HHHHHHHHHHHHHccCCH
Q 045024 9 LQLEDSLEANPD-----DPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQ--N-------AVAFRYLGHYYTRFSIDT 74 (1173)
Q Consensus 9 ~~l~~al~~~P~-----~~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~--~-------~~a~~~lg~~~~~~~g~~ 74 (1173)
..+...++.-|. +|..-...+.......+ +.+|...+.++...-|. . +...-..|.+... .|++
T Consensus 397 sll~~~~~~lP~~~l~~~P~Lvll~aW~~~s~~r-~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~-~~~~ 474 (894)
T COG2909 397 SLLLAWLKALPAELLASTPRLVLLQAWLLASQHR-LAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALN-RGDP 474 (894)
T ss_pred HHHHHHHHhCCHHHHhhCchHHHHHHHHHHHccC-hHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHh-cCCH
Confidence 344444444443 45555666776766776 99999998888754333 1 3455567788888 9999
Q ss_pred HHHHHHHHHHHhhCCCCHH-----HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCC------cHHHHHHHHHHHHHcCCH-
Q 045024 75 QRAIKCYQRAVSLSPDDSV-----SGEALCELLEHGGKESLEVVVCREASDKSPR------AFWAFRRLGYLQLHHKKW- 142 (1173)
Q Consensus 75 ~eA~~~~~~al~~~p~~~~-----a~~~La~~~~~~g~~~~A~~~~~~al~~~p~------~~~a~~~la~~~~~~g~~- 142 (1173)
++|++..+.++..-|.+.. +...+|.+..-.|++++|..+...+.+.... ..++....+.+...+|+.
T Consensus 475 e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~ 554 (894)
T COG2909 475 EEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVA 554 (894)
T ss_pred HHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHH
Confidence 9999999999988776543 4778888999999999999999888766322 234455667788888843
Q ss_pred -HHHHHHHHHHH----HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCC--h-HHHHHHHHHHHHcCCh
Q 045024 143 -SEAVQSLQHAI----RGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIEL----DDTS--I-FPLLESGNIFLMLGNF 210 (1173)
Q Consensus 143 -~~A~~~l~~al----~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----~p~~--~-~a~~~la~~~~~~g~~ 210 (1173)
.+.+..+...- ...|.........+.++...-+++.+.......++. .|.. . -+...++.++...|+.
T Consensus 555 ~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl 634 (894)
T COG2909 555 RAEQEKAFNLIREQHLEQKPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDL 634 (894)
T ss_pred HHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCH
Confidence 33333333222 223333333333333333333356665555555544 2332 2 2234789999999999
Q ss_pred HHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHH
Q 045024 211 RKGVEQFQLALKISSENVSAHYGLASGLLGLAKQCINLGAFRWGASLLE 259 (1173)
Q Consensus 211 ~~A~~~~~~al~~~p~~~~a~~~la~~~~~l~~~~~a~g~~~~A~~~l~ 259 (1173)
++|...+.+............+..+.++...-......|+...+.....
T Consensus 635 ~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~ 683 (894)
T COG2909 635 DKALAQLDELERLLLNGQYHVDYLAAAYKVKLILWLAQGDKELAAEWLL 683 (894)
T ss_pred HHHHHHHHHHHHHhcCCCCCchHHHHHHHhhHHHhcccCCHHHHHHHHH
Confidence 9999999988775443322223345555544555556677666554443
|
|
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=96.39 E-value=7.5 Score=53.49 Aligned_cols=86 Identities=12% Similarity=-0.021 Sum_probs=53.9
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcC--------CCCCCCCchHHHHHHHHHHHHhcCCH--HHHHHHHHH
Q 045024 521 YPESHNLYGLVCEARSDYQAAVVSYRLARYAISSS--------SGTVPNSHFQDISINLARSLSRAGNA--LDAVRECES 590 (1173)
Q Consensus 521 ~~~a~~~lg~i~~~~g~~~~A~~~~~kAl~l~~~~--------pe~~~~~~~~~~~~~La~~~~~~g~~--~eAi~~~~~ 590 (1173)
-+.++...|..+...|+-..|+.++++.+.....+ |.+....-+..+...++.-....|++ ++-++.|..
T Consensus 1701 ~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~ 1780 (2382)
T KOG0890|consen 1701 LPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHD 1780 (2382)
T ss_pred cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccchhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 35566777888888888888888888776443222 11111112223455566666666663 456677888
Q ss_pred HHHcCCCCHHHHHHHH
Q 045024 591 LERQGMLDAEVLQVYA 606 (1173)
Q Consensus 591 ~~~~~p~~~~~~~~la 606 (1173)
+.+..|.....++.+|
T Consensus 1781 ~~ail~ewe~~hy~l~ 1796 (2382)
T KOG0890|consen 1781 AKAILPEWEDKHYHLG 1796 (2382)
T ss_pred HHHHcccccCceeeHH
Confidence 8888887777766666
|
|
| >PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.23 Score=56.71 Aligned_cols=80 Identities=16% Similarity=0.054 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH---cCCHHHHHHHHHH
Q 045024 75 QRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLH---HKKWSEAVQSLQH 151 (1173)
Q Consensus 75 ~eA~~~~~~al~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~---~g~~~~A~~~l~~ 151 (1173)
+.-+..|++|++.+|++...+..+-....+..+.++..+.+++++..+|+++..|...-..... .-.++.....|.+
T Consensus 48 E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~ 127 (321)
T PF08424_consen 48 ERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEK 127 (321)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHH
Confidence 3455666777777777666666666666666666666666777777777666666544333222 1235555555555
Q ss_pred HHH
Q 045024 152 AIR 154 (1173)
Q Consensus 152 al~ 154 (1173)
+++
T Consensus 128 ~l~ 130 (321)
T PF08424_consen 128 CLR 130 (321)
T ss_pred HHH
Confidence 544
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=96.31 E-value=1.7 Score=50.33 Aligned_cols=151 Identities=13% Similarity=-0.000 Sum_probs=105.4
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCC-----
Q 045024 123 PRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYP----TSPHLWEALGLAYHRLGMFSAAIKSYGRAIEL-DDT----- 192 (1173)
Q Consensus 123 p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~----- 192 (1173)
......|...+.+..+.|.++.|...+.++...++ ..+.+.+..+.+....|+..+|+..++..+.. ...
T Consensus 143 ~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~ 222 (352)
T PF02259_consen 143 EELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSI 222 (352)
T ss_pred hHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccc
Confidence 34567788888999999999999999988887552 24667777888888999999999888887771 100
Q ss_pred ----------------------------ChHHHHHHHHHHHHc------CChHHHHHHHHHHHhhcCCCHHHHHHHHHHH
Q 045024 193 ----------------------------SIFPLLESGNIFLML------GNFRKGVEQFQLALKISSENVSAHYGLASGL 238 (1173)
Q Consensus 193 ----------------------------~~~a~~~la~~~~~~------g~~~~A~~~~~~al~~~p~~~~a~~~la~~~ 238 (1173)
...++..+|...... +..+++...|.++.+.+|+...+++.+|..+
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~ 302 (352)
T PF02259_consen 223 SNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFN 302 (352)
T ss_pred cHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHH
Confidence 123455666666666 8888999999999999999999999888888
Q ss_pred HHHHHHHHHhhcH---HHHHHHHHHHHHHHHHHhhhcC
Q 045024 239 LGLAKQCINLGAF---RWGASLLEDACKVAEANTRLAG 273 (1173)
Q Consensus 239 ~~l~~~~~a~g~~---~~A~~~l~~Al~~~~~~~~~~~ 273 (1173)
...-........- .....+...|+..+-......+
T Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~ 340 (352)
T PF02259_consen 303 DKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGS 340 (352)
T ss_pred HHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCC
Confidence 7765533321110 1233344555555555444333
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.073 Score=58.05 Aligned_cols=102 Identities=20% Similarity=0.303 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHH
Q 045024 126 FWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPT----SPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESG 201 (1173)
Q Consensus 126 ~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la 201 (1173)
+..+..-|+-|++.++|..|+..|.+.++..-. +...|.+.+-+....|+|..|+....+++..+|.+..++++-+
T Consensus 81 Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~A 160 (390)
T KOG0551|consen 81 AENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGA 160 (390)
T ss_pred HHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhh
Confidence 344556788888888888888888888876433 3456778888888888888888888888888888888888888
Q ss_pred HHHHHcCChHHHHHHHHHHHhhcCCC
Q 045024 202 NIFLMLGNFRKGVEQFQLALKISSEN 227 (1173)
Q Consensus 202 ~~~~~~g~~~~A~~~~~~al~~~p~~ 227 (1173)
.+++.+.++++|....+..++++.+.
T Consensus 161 kc~~eLe~~~~a~nw~ee~~~~d~e~ 186 (390)
T KOG0551|consen 161 KCLLELERFAEAVNWCEEGLQIDDEA 186 (390)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhHHH
Confidence 88888888888888888877765443
|
|
| >COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.25 E-value=1.3 Score=49.76 Aligned_cols=178 Identities=21% Similarity=0.162 Sum_probs=131.8
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc---cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----CCCHHHH
Q 045024 39 KEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRF---SIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEH----GGKESLE 111 (1173)
Q Consensus 39 ~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~---~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~----~g~~~~A 111 (1173)
+..|...+..+-. -.++.....++..|..- ..+..+|..+|+.+. ...++.+.+.+|.+|.. ..+..+|
T Consensus 57 ~~~a~~~~~~a~~--~~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a--~~g~~~a~~~lg~~~~~G~gv~~d~~~A 132 (292)
T COG0790 57 YAKALKSYEKAAE--LGDAAALALLGQMYGAGKGVSRDKTKAADWYRCAA--ADGLAEALFNLGLMYANGRGVPLDLVKA 132 (292)
T ss_pred HHHHHHHHHHhhh--cCChHHHHHHHHHHHhccCccccHHHHHHHHHHHh--hcccHHHHHhHHHHHhcCCCcccCHHHH
Confidence 7888888888765 23347788888888761 346888999999554 45677888899999976 4489999
Q ss_pred HHHHHHHHhhCCCc-HHHHHHHHHHHHHcC-------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHH
Q 045024 112 VVVCREASDKSPRA-FWAFRRLGYLQLHHK-------KWSEAVQSLQHAIRGYPTSPHLWEALGLAYHR----LGMFSAA 179 (1173)
Q Consensus 112 ~~~~~~al~~~p~~-~~a~~~la~~~~~~g-------~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~----~g~~~~A 179 (1173)
...|+++.+..... ..+.+.+|..|..-. +...|...|.++-... ++.+...+|.+|.. ..++.+|
T Consensus 133 ~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~~d~~~A 210 (292)
T COG0790 133 LKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG--NPDAQLLLGRMYEKGLGVPRDLKKA 210 (292)
T ss_pred HHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc--CHHHHHHHHHHHHcCCCCCcCHHHH
Confidence 99999998775443 344778888877642 2347888888887765 78888999988865 4589999
Q ss_pred HHHHHHHHHhCCCChHHHHHHHHHHHHcC---------------ChHHHHHHHHHHHhhcC
Q 045024 180 IKSYGRAIELDDTSIFPLLESGNIFLMLG---------------NFRKGVEQFQLALKISS 225 (1173)
Q Consensus 180 ~~~~~~al~~~p~~~~a~~~la~~~~~~g---------------~~~~A~~~~~~al~~~p 225 (1173)
...|.++-+... ....+.++ ++...| +...|...+..+....+
T Consensus 211 ~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 268 (292)
T COG0790 211 FRWYKKAAEQGD--GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGF 268 (292)
T ss_pred HHHHHHHHHCCC--HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCC
Confidence 999999998776 78888888 666666 55555666665554433
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=96.08 E-value=0.0094 Score=42.72 Aligned_cols=33 Identities=27% Similarity=0.604 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 045024 419 DAWAHIGKLYGEVGEKKLARQAFDSARSIDPSL 451 (1173)
Q Consensus 419 ~a~~~Lg~~y~~~g~~e~A~~~f~~al~~~P~~ 451 (1173)
.+|+.+|.+|...|++++|...|+++++++|++
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~n 34 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 578999999999999999999999999999853
|
... |
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.98 E-value=1.3 Score=45.24 Aligned_cols=117 Identities=18% Similarity=0.126 Sum_probs=85.9
Q ss_pred HHHHHHHHHHhhCCCCHHH---HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc---HHHHHHHHHHHHHcCCHHHHHHHH
Q 045024 76 RAIKCYQRAVSLSPDDSVS---GEALCELLEHGGKESLEVVVCREASDKSPRA---FWAFRRLGYLQLHHKKWSEAVQSL 149 (1173)
Q Consensus 76 eA~~~~~~al~~~p~~~~a---~~~La~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~la~~~~~~g~~~~A~~~l 149 (1173)
+.....++....+|.+..+ ...++..+...|++++|+..++.++....+. ..+-.+++.+...+|.+++|+..+
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L 149 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTL 149 (207)
T ss_pred hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 3333444444444444433 5677888899999999999999988654442 456778999999999999999988
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 045024 150 QHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTS 193 (1173)
Q Consensus 150 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 193 (1173)
......+ -.+......|.++...|+-++|+..|+++++.+++.
T Consensus 150 ~t~~~~~-w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~ 192 (207)
T COG2976 150 DTIKEES-WAAIVAELRGDILLAKGDKQEARAAYEKALESDASP 192 (207)
T ss_pred hcccccc-HHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCCh
Confidence 7653221 123345678999999999999999999999987544
|
|
| >PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.64 Score=53.08 Aligned_cols=122 Identities=11% Similarity=-0.030 Sum_probs=82.1
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH---cCChHHHHHHHHH
Q 045024 143 SEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLM---LGNFRKGVEQFQL 219 (1173)
Q Consensus 143 ~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~---~g~~~~A~~~~~~ 219 (1173)
+.-+.+|++|++.+|++...+..+-....+..+.++..+.+++++..+|+++..|..+-..... .-.++.....|.+
T Consensus 48 E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~ 127 (321)
T PF08424_consen 48 ERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEK 127 (321)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHH
Confidence 4556677777777787777777777777777777777777888887777777776655444333 2345666666666
Q ss_pred HHhhc-----------CCCHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHH
Q 045024 220 ALKIS-----------SENVSAHYGLASGLLGLAKQCINLGAFRWGASLLEDACKV 264 (1173)
Q Consensus 220 al~~~-----------p~~~~a~~~la~~~~~l~~~~~a~g~~~~A~~~l~~Al~~ 264 (1173)
++..- +..+.....+..++.+........|..+.|+..++..+++
T Consensus 128 ~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~ 183 (321)
T PF08424_consen 128 CLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEF 183 (321)
T ss_pred HHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHH
Confidence 66531 1223345566667777777777788888888777776664
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=95.80 E-value=4.3 Score=45.37 Aligned_cols=63 Identities=14% Similarity=0.129 Sum_probs=54.7
Q ss_pred HHcCChHHHHHHHHHHHhhc-CCCHHHHHHHHHHHHHHHHHHHHhh-cHHHHHHHHHHHHHHHHH
Q 045024 205 LMLGNFRKGVEQFQLALKIS-SENVSAHYGLASGLLGLAKQCINLG-AFRWGASLLEDACKVAEA 267 (1173)
Q Consensus 205 ~~~g~~~~A~~~~~~al~~~-p~~~~a~~~la~~~~~l~~~~~a~g-~~~~A~~~l~~Al~~~~~ 267 (1173)
.+.|+++.|..++.++-... ..++.....++.++...|......+ +++.|...+++|.+++..
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~ 68 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEK 68 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHh
Confidence 46899999999999988766 5667777889999999999999999 999999999999998755
|
It is also involved in sporulation []. |
| >COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.77 E-value=3.5 Score=46.42 Aligned_cols=176 Identities=22% Similarity=0.156 Sum_probs=128.0
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHccC---cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc----CCHHHHHH
Q 045024 7 LLLQLEDSLEANPDDPSLHLDLGLHLWENSE---SKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFS----IDTQRAIK 79 (1173)
Q Consensus 7 Ai~~l~~al~~~P~~~~~~~~lg~~~~~~~~---~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~----g~~~eA~~ 79 (1173)
|+..+..+-. -.++...+.++..|....+ +..+|..+|..+. ...++.+.+.+|.+|.. - .|..+|..
T Consensus 60 a~~~~~~a~~--~~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a--~~g~~~a~~~lg~~~~~-G~gv~~d~~~A~~ 134 (292)
T COG0790 60 ALKSYEKAAE--LGDAAALALLGQMYGAGKGVSRDKTKAADWYRCAA--ADGLAEALFNLGLMYAN-GRGVPLDLVKALK 134 (292)
T ss_pred HHHHHHHhhh--cCChHHHHHHHHHHHhccCccccHHHHHHHHHHHh--hcccHHHHHhHHHHHhc-CCCcccCHHHHHH
Confidence 3555555544 2334678888888865442 3688999999544 56678899999999987 3 28999999
Q ss_pred HHHHHHhhCCCC-HHHHHHHHHHHHHCC-------CHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH----cCCHHHHHH
Q 045024 80 CYQRAVSLSPDD-SVSGEALCELLEHGG-------KESLEVVVCREASDKSPRAFWAFRRLGYLQLH----HKKWSEAVQ 147 (1173)
Q Consensus 80 ~~~~al~~~p~~-~~a~~~La~~~~~~g-------~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~----~g~~~~A~~ 147 (1173)
+|+++.+..-.. ..+.+.++..|..-+ +...|...|.++-... ++.+...+|.+|.. ..++.+|..
T Consensus 135 ~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~~d~~~A~~ 212 (292)
T COG0790 135 YYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG--NPDAQLLLGRMYEKGLGVPRDLKKAFR 212 (292)
T ss_pred HHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc--CHHHHHHHHHHHHcCCCCCcCHHHHHH
Confidence 999999875433 344788888886642 2347888898887665 67888899988865 458999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcC---------------CHHHHHHHHHHHHHhCCC
Q 045024 148 SLQHAIRGYPTSPHLWEALGLAYHRLG---------------MFSAAIKSYGRAIELDDT 192 (1173)
Q Consensus 148 ~l~~al~~~p~~~~~~~~la~~~~~~g---------------~~~~A~~~~~~al~~~p~ 192 (1173)
.|.++.+... ....+.++ ++...| +...|...+..+....+.
T Consensus 213 wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 269 (292)
T COG0790 213 WYKKAAEQGD--GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGFD 269 (292)
T ss_pred HHHHHHHCCC--HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCCh
Confidence 9999998876 78888888 666666 666666666666555443
|
|
| >PRK13184 pknD serine/threonine-protein kinase; Reviewed | Back alignment and domain information |
|---|
Probab=95.75 E-value=4.7 Score=52.06 Aligned_cols=106 Identities=16% Similarity=0.166 Sum_probs=82.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHc----C---CHHHHHHHHHHHHHhCCCChHHHHHHH
Q 045024 132 LGYLQLHHKKWSEAVQSLQHAIRGYPTS---PHLWEALGLAYHRL----G---MFSAAIKSYGRAIELDDTSIFPLLESG 201 (1173)
Q Consensus 132 la~~~~~~g~~~~A~~~l~~al~~~p~~---~~~~~~la~~~~~~----g---~~~~A~~~~~~al~~~p~~~~a~~~la 201 (1173)
...++...+.|++|+..|++.....|+. -++.+..|.....+ | .+++|+..|++.- -.|.-+--+...|
T Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 559 (932)
T PRK13184 481 VPDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLH-GGVGAPLEYLGKA 559 (932)
T ss_pred CcHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhc-CCCCCchHHHhHH
Confidence 3466777889999999999999998864 45677777776543 3 4777888887743 3566777788999
Q ss_pred HHHHHcCChHHHHHHHHHHHhhcCCCHHHHHHHHHHH
Q 045024 202 NIFLMLGNFRKGVEQFQLALKISSENVSAHYGLASGL 238 (1173)
Q Consensus 202 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~ 238 (1173)
.+|.++|++++-++.|.-+++..|++|..-...-.+-
T Consensus 560 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 596 (932)
T PRK13184 560 LVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLV 596 (932)
T ss_pred HHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHH
Confidence 9999999999999999999999999987654433333
|
|
| >KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.75 E-value=0.0088 Score=65.35 Aligned_cols=94 Identities=22% Similarity=0.268 Sum_probs=84.8
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH
Q 045024 133 GYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRK 212 (1173)
Q Consensus 133 a~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~ 212 (1173)
+.-.+..|+++.|++.|..++.++|.....+...+.++.++++...|+..+..+++++|+....+-..+.....+|++++
T Consensus 121 A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~ 200 (377)
T KOG1308|consen 121 ASEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEE 200 (377)
T ss_pred HHHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHH
Confidence 34455678899999999999999999999999999999999999999999999999999998888889999999999999
Q ss_pred HHHHHHHHHhhcCC
Q 045024 213 GVEQFQLALKISSE 226 (1173)
Q Consensus 213 A~~~~~~al~~~p~ 226 (1173)
|...+..+.+++-+
T Consensus 201 aa~dl~~a~kld~d 214 (377)
T KOG1308|consen 201 AAHDLALACKLDYD 214 (377)
T ss_pred HHHHHHHHHhcccc
Confidence 99999999887654
|
|
| >PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ] | Back alignment and domain information |
|---|
Probab=95.60 E-value=0.68 Score=53.54 Aligned_cols=143 Identities=15% Similarity=0.058 Sum_probs=104.7
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcC-----------CC---------CCCCCchHHHHHHH
Q 045024 512 QQAIQRGPHYPESHNLYGLVCEARSDYQAAVVSYRLARYAISSS-----------SG---------TVPNSHFQDISINL 571 (1173)
Q Consensus 512 ~~al~~~P~~~~a~~~lg~i~~~~g~~~~A~~~~~kAl~l~~~~-----------pe---------~~~~~~~~~~~~~L 571 (1173)
-..++.+|-...++..++.++..+|+.+.|.+..++|+-.++.. +. ..++..+..+.+..
T Consensus 30 ~~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~ 109 (360)
T PF04910_consen 30 INLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRY 109 (360)
T ss_pred HHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHH
Confidence 34568889999999999999999999999999999997655421 01 12256677788888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCC-CHHH-HHHHHHHHHHcCChHHHHHHHHHHhhhccccccchhhhhHHHHHHHHH
Q 045024 572 ARSLSRAGNALDAVRECESLERQGML-DAEV-LQVYAFSLWQLGKYDLALSMARNLASSVSAMEQSSAAASVSFICRLLY 649 (1173)
Q Consensus 572 a~~~~~~g~~~eAi~~~~~~~~~~p~-~~~~-~~~la~a~~~~g~~~eA~~~~~~aL~~~p~~~~~~~~~~~~~la~l~~ 649 (1173)
...+.+.|-+..|.+.++-++..+|. ||-+ ++.+-....+.++++-=++.++.........-...-|......|-.++
T Consensus 110 i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~aLA~~ 189 (360)
T PF04910_consen 110 IQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSIALAYF 189 (360)
T ss_pred HHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHHHHHHH
Confidence 99999999999999999999999999 7664 444555566788898888888876552111101123445555666666
Q ss_pred HhcCh
Q 045024 650 HISGL 654 (1173)
Q Consensus 650 ~~g~~ 654 (1173)
..++.
T Consensus 190 ~l~~~ 194 (360)
T PF04910_consen 190 RLEKE 194 (360)
T ss_pred HhcCc
Confidence 66666
|
Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions []. |
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.58 E-value=7.6 Score=46.72 Aligned_cols=184 Identities=18% Similarity=0.085 Sum_probs=101.4
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCCCHHHHHH----------HHHHHHHccCCHHHHHHH
Q 045024 11 LEDSLEANPDDPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRY----------LGHYYTRFSIDTQRAIKC 80 (1173)
Q Consensus 11 l~~al~~~P~~~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~----------lg~~~~~~~g~~~eA~~~ 80 (1173)
..+.++.+| ++..|..++.....+-. ++.|...|-+.-. .|. ...--. .+.+-.- -|++++|.+.
T Consensus 682 A~qfiEdnP-HprLWrllAe~Al~Kl~-l~tAE~AFVrc~d-Y~G-ik~vkrl~~i~s~~~q~aei~~~-~g~feeaek~ 756 (1189)
T KOG2041|consen 682 AIQFIEDNP-HPRLWRLLAEYALFKLA-LDTAEHAFVRCGD-YAG-IKLVKRLRTIHSKEQQRAEISAF-YGEFEEAEKL 756 (1189)
T ss_pred HHHHHhcCC-chHHHHHHHHHHHHHHh-hhhHhhhhhhhcc-ccc-hhHHHHhhhhhhHHHHhHhHhhh-hcchhHhhhh
Confidence 344455455 57788888887776665 7777777665421 111 111112 2333333 5777777777
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCC--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 045024 81 YQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPR--AFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPT 158 (1173)
Q Consensus 81 ~~~al~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~--~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~ 158 (1173)
|-.+=+ .+ .-..++.+.|++-...+.++.--.-..+ --.++..+|..+..+..|++|.++|...-.
T Consensus 757 yld~dr---rD-----LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~---- 824 (1189)
T KOG2041|consen 757 YLDADR---RD-----LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD---- 824 (1189)
T ss_pred hhccch---hh-----hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc----
Confidence 754321 11 1223445566666665555432211111 246788888888888888888888876421
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHH
Q 045024 159 SPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQL 219 (1173)
Q Consensus 159 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~ 219 (1173)
.-+...+++...+|++-. .....-|++...+-.+|.++...|.-++|++.|-+
T Consensus 825 ----~e~~~ecly~le~f~~LE----~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr 877 (1189)
T KOG2041|consen 825 ----TENQIECLYRLELFGELE----VLARTLPEDSELLPVMADMFTSVGMCDQAVEAYLR 877 (1189)
T ss_pred ----hHhHHHHHHHHHhhhhHH----HHHHhcCcccchHHHHHHHHHhhchHHHHHHHHHh
Confidence 123445555555555422 22333355555666666666666666666665543
|
|
| >KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.23 E-value=0.019 Score=62.79 Aligned_cols=90 Identities=21% Similarity=0.206 Sum_probs=66.2
Q ss_pred HHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 045024 103 EHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKS 182 (1173)
Q Consensus 103 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 182 (1173)
...|.+++|++.|..++.++|.....+...+.+++.+++...|+..+..++.++|+...-+-..|.....+|++++|...
T Consensus 125 ln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~d 204 (377)
T KOG1308|consen 125 LNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHD 204 (377)
T ss_pred hcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHH
Confidence 45566777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHhCCC
Q 045024 183 YGRAIELDDT 192 (1173)
Q Consensus 183 ~~~al~~~p~ 192 (1173)
+..+.+++-+
T Consensus 205 l~~a~kld~d 214 (377)
T KOG1308|consen 205 LALACKLDYD 214 (377)
T ss_pred HHHHHhcccc
Confidence 7777776533
|
|
| >KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.14 E-value=0.097 Score=57.15 Aligned_cols=98 Identities=14% Similarity=0.063 Sum_probs=73.2
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCC----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 045024 95 GEALCELLEHGGKESLEVVVCREASDKSPR----AFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAY 170 (1173)
Q Consensus 95 ~~~La~~~~~~g~~~~A~~~~~~al~~~p~----~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~ 170 (1173)
+-.-|.-|++..+|..|+..|.+.++..-. +...|.+.+-+.+..|+|..|+....+++..+|.+..+++.-+.++
T Consensus 84 ~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~ 163 (390)
T KOG0551|consen 84 YKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKCL 163 (390)
T ss_pred HHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHH
Confidence 444566666777777777777777665432 3556777788888888888888888888888888888888888888
Q ss_pred HHcCCHHHHHHHHHHHHHhCCC
Q 045024 171 HRLGMFSAAIKSYGRAIELDDT 192 (1173)
Q Consensus 171 ~~~g~~~~A~~~~~~al~~~p~ 192 (1173)
+.+.++.+|...++..++++..
T Consensus 164 ~eLe~~~~a~nw~ee~~~~d~e 185 (390)
T KOG0551|consen 164 LELERFAEAVNWCEEGLQIDDE 185 (390)
T ss_pred HHHHHHHHHHHHHhhhhhhhHH
Confidence 8888888888888887776544
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=95.12 E-value=0.035 Score=39.69 Aligned_cols=31 Identities=29% Similarity=0.567 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHhhCC
Q 045024 58 VAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSP 89 (1173)
Q Consensus 58 ~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p 89 (1173)
.+++.+|.+|.. .|++++|+.+|+++++++|
T Consensus 2 ~~~~~lg~~y~~-~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 2 EAYYNLGKIYEQ-LGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHH-TTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHH-cCCHHHHHHHHHHHHhhCC
Confidence 345566666666 6666666666666666655
|
... |
| >PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function | Back alignment and domain information |
|---|
Probab=95.05 E-value=0.048 Score=50.28 Aligned_cols=90 Identities=19% Similarity=0.257 Sum_probs=70.6
Q ss_pred hhhhhhcccccccHHHHHHHHhhhcCCCc---eeehhcchhHHHHHHhhcCc----hhHHHHHHHHHHHHHhcCcccchH
Q 045024 1012 LGFVFLWKKDFFSAEKCLAQACSLAGAES---CLFLCHGTICMEIARQYHDS----HFLSLAVRSLTKAQKTSFVQLPVV 1084 (1173)
Q Consensus 1012 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 1084 (1173)
.|+.++++||...|=+-+.-.|+.++.+. .++..||.||+++|..--+| .||--+|.+++++..=|+.. +
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~---A 78 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDS---A 78 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhH---H
Confidence 46788999999999999999999999998 78889999999999999988 48999999999998776655 2
Q ss_pred HHHHHhhhcCCCcHHHHHHhh
Q 045024 1085 SLLLAQAEGSLSSIEKWEKNL 1105 (1173)
Q Consensus 1085 ~~~~~~~~~~~~~~~~~~~~~ 1105 (1173)
..|.-=| .-+||..-.+|.+
T Consensus 79 ~~L~~la-~~l~s~~~Ykk~v 98 (111)
T PF04781_consen 79 HSLFELA-SQLGSVKYYKKAV 98 (111)
T ss_pred HHHHHHH-HHhhhHHHHHHHH
Confidence 2222212 2345555455444
|
|
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.76 E-value=1.4 Score=46.72 Aligned_cols=189 Identities=15% Similarity=0.181 Sum_probs=121.2
Q ss_pred cHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHccCCHHHHHHHHHHHHhhC-----CCCHH-HHHHHHHHHHHCCC
Q 045024 38 SKEKAAEHFVIAAKLNPQNA----VAFRYLGHYYTRFSIDTQRAIKCYQRAVSLS-----PDDSV-SGEALCELLEHGGK 107 (1173)
Q Consensus 38 ~~~~A~~~~~~al~~~p~~~----~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~-----p~~~~-a~~~La~~~~~~g~ 107 (1173)
.+++|+..|++++++.|... .++-.+..++++ .|++++-+..|.+.+..- .+..+ ....+-..-....+
T Consensus 42 ~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~-l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~ 120 (440)
T KOG1464|consen 42 EPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFR-LGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKN 120 (440)
T ss_pred CHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhh
Confidence 48999999999999988764 477788899999 999999999888876421 11111 11111111112223
Q ss_pred HHHHHHHHHHH---HhhCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------------CHHHHHHHHHH
Q 045024 108 ESLEVVVCREA---SDKSPRA---FWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPT------------SPHLWEALGLA 169 (1173)
Q Consensus 108 ~~~A~~~~~~a---l~~~p~~---~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~------------~~~~~~~la~~ 169 (1173)
.+.-...|+.. ++...++ ...-..+|.+|+..++|.+-...+++.-....+ -.+.+..-..+
T Consensus 121 m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQm 200 (440)
T KOG1464|consen 121 MDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQM 200 (440)
T ss_pred hHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhh
Confidence 33333333322 2211111 122346899999999998888777776543221 13455555677
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCChHHHH------HHHHHHHHcCChHHHHHHHHHHHhhcCCC
Q 045024 170 YHRLGMFSAAIKSYGRAIELDDTSIFPLL------ESGNIFLMLGNFRKGVEQFQLALKISSEN 227 (1173)
Q Consensus 170 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~------~la~~~~~~g~~~~A~~~~~~al~~~p~~ 227 (1173)
|..+.+-.+-...|++++.+...-+..+. --|..+.+.|++++|-..|-.+++.....
T Consensus 201 YT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEs 264 (440)
T KOG1464|consen 201 YTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDES 264 (440)
T ss_pred hhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHHhccccc
Confidence 88888888888899999887544332221 23566888999999999888888865443
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=94.72 E-value=0.053 Score=38.33 Aligned_cols=33 Identities=21% Similarity=0.259 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 045024 419 DAWAHIGKLYGEVGEKKLARQAFDSARSIDPSL 451 (1173)
Q Consensus 419 ~a~~~Lg~~y~~~g~~e~A~~~f~~al~~~P~~ 451 (1173)
++++.+|.++.+.|++++|+..|+++++..|++
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 467899999999999999999999999998874
|
|
| >PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ] | Back alignment and domain information |
|---|
Probab=94.65 E-value=1 Score=52.11 Aligned_cols=35 Identities=23% Similarity=0.263 Sum_probs=28.4
Q ss_pred HHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 045024 50 AKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAV 85 (1173)
Q Consensus 50 l~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al 85 (1173)
++.+|-+.+++..++.++.. +|+...|.+..++|+
T Consensus 33 l~~~PyHidtLlqls~v~~~-~gd~~~A~~lleRAL 67 (360)
T PF04910_consen 33 LQKNPYHIDTLLQLSEVYRQ-QGDHAQANDLLERAL 67 (360)
T ss_pred HHHCCCcHHHHHHHHHHHHH-cCCHHHHHHHHHHHH
Confidence 45678888888888888888 888888888888876
|
Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions []. |
| >KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.50 E-value=17 Score=45.09 Aligned_cols=152 Identities=15% Similarity=0.101 Sum_probs=97.5
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH---HcCCHHHHHHH
Q 045024 72 IDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQL---HHKKWSEAVQS 148 (1173)
Q Consensus 72 g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~---~~g~~~~A~~~ 148 (1173)
|.-++=+..++.-+.+++.+......|..++...|++++-...-..+.+..|..+..|.....-.. ..++..++...
T Consensus 93 ~~~~~ei~t~~ee~ai~~y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~ 172 (881)
T KOG0128|consen 93 GGGNQEIRTLEEELAINSYKYAQMVQLIGLLRKLGDLEKLRQARLEMSEIAPLPPHLWLEWLKDELSMTQSEERKEVEEL 172 (881)
T ss_pred ccchhHHHHHHHHhcccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCcchhHHHHH
Confidence 344445566666666777777778888888888888887777777777777777777665444332 23667777888
Q ss_pred HHHHHHhCCCCHHHHHHHHHHH-------HHcCCHHHHHHHHHHHHHhCCC-------ChHHHHHHHHHHHHcCChHHHH
Q 045024 149 LQHAIRGYPTSPHLWEALGLAY-------HRLGMFSAAIKSYGRAIELDDT-------SIFPLLESGNIFLMLGNFRKGV 214 (1173)
Q Consensus 149 l~~al~~~p~~~~~~~~la~~~-------~~~g~~~~A~~~~~~al~~~p~-------~~~a~~~la~~~~~~g~~~~A~ 214 (1173)
|++++.-. +++..|...+... ...++++.-...|.+++..-.. ....+...-..|...-..++-+
T Consensus 173 ~ekal~dy-~~v~iw~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t~G~~~we~~~E~e~~~l~n~~~~qv~ 251 (881)
T KOG0128|consen 173 FEKALGDY-NSVPIWEEVVNYLVGFGNVAKKSEDYKKERSVFERALRSLGSHITEGAAIWEMYREFEVTYLCNVEQRQVI 251 (881)
T ss_pred HHHHhccc-ccchHHHHHHHHHHhccccccccccchhhhHHHHHHHhhhhhhhcccHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 88887532 3344444444333 4456778888888888764321 2344445555566555556777
Q ss_pred HHHHHHHhhc
Q 045024 215 EQFQLALKIS 224 (1173)
Q Consensus 215 ~~~~~al~~~ 224 (1173)
.++...+...
T Consensus 252 a~~~~el~~~ 261 (881)
T KOG0128|consen 252 ALFVRELKQP 261 (881)
T ss_pred HHHHHHHhcc
Confidence 7777777653
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=94.37 E-value=0.062 Score=39.15 Aligned_cols=28 Identities=21% Similarity=0.506 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 045024 420 AWAHIGKLYGEVGEKKLARQAFDSARSI 447 (1173)
Q Consensus 420 a~~~Lg~~y~~~g~~e~A~~~f~~al~~ 447 (1173)
++.+||.+|.+.|++++|+++|++++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4778999999999999999999996654
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=94.29 E-value=0.094 Score=38.21 Aligned_cols=29 Identities=24% Similarity=0.314 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q 045024 524 SHNLYGLVCEARSDYQAAVVSYRLARYAI 552 (1173)
Q Consensus 524 a~~~lg~i~~~~g~~~~A~~~~~kAl~l~ 552 (1173)
++..+|.+|...|++++|+++|++++.+.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~ 29 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALA 29 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 47899999999999999999999987553
|
|
| >PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B | Back alignment and domain information |
|---|
Probab=94.22 E-value=0.45 Score=42.91 Aligned_cols=68 Identities=19% Similarity=0.122 Sum_probs=38.6
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--hHHHHHHHHHHHHcCChHHH
Q 045024 146 VQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTS--IFPLLESGNIFLMLGNFRKG 213 (1173)
Q Consensus 146 ~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~a~~~la~~~~~~g~~~~A 213 (1173)
+..+++.+..+|++..+.+.+|..+...|++++|++.+-.+++.+++. ..+...+-.++..+|.-+.-
T Consensus 8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~pl 77 (90)
T PF14561_consen 8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPL 77 (90)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChH
Confidence 445666666677777777777777777777777777777776666543 44444455555555544333
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=94.21 E-value=0.073 Score=37.58 Aligned_cols=31 Identities=19% Similarity=0.129 Sum_probs=19.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 045024 567 ISINLARSLSRAGNALDAVRECESLERQGML 597 (1173)
Q Consensus 567 ~~~~La~~~~~~g~~~eAi~~~~~~~~~~p~ 597 (1173)
+++.+|.++.+.|++++|++.|+++++..|+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 4556666666666666666666666666654
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.11 E-value=3.5 Score=49.35 Aligned_cols=123 Identities=12% Similarity=0.064 Sum_probs=70.5
Q ss_pred HhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-hh-------HHHHhHHHHHHhcCCHHHHHHHHHHHHhc
Q 045024 411 LQLDVSLADAWAHIGKLYGEVGEKKLARQAFDSARSIDPSL-AL-------PWAGMSADVQASESLVDDAFESCLRAVQI 482 (1173)
Q Consensus 411 l~l~p~~~~a~~~Lg~~y~~~g~~e~A~~~f~~al~~~P~~-~~-------a~~~l~a~~~~~~g~~~eA~~~~~~al~~ 482 (1173)
++.+| .|..|..++......-.++.|...|-+.-.. |.- .. .--.+.+++-.--|++++|...|-.+=..
T Consensus 686 iEdnP-HprLWrllAe~Al~Kl~l~tAE~AFVrc~dY-~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drr 763 (1189)
T KOG2041|consen 686 IEDNP-HPRLWRLLAEYALFKLALDTAEHAFVRCGDY-AGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRR 763 (1189)
T ss_pred HhcCC-chHHHHHHHHHHHHHHhhhhHhhhhhhhccc-cchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchh
Confidence 34455 7899999999988888899999988776432 111 00 00011233444568899998888765444
Q ss_pred CCchHHHHHHHHHH-----HHhCCCC-hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 045024 483 LPLAEFQIGLAKLA-----KLSGHLS-SSQVFGAIQQAIQRGPHYPESHNLYGLVCEARSDYQAAVVSYRLA 548 (1173)
Q Consensus 483 ~p~~~~~~~la~l~-----~~~g~~~-~~~A~~~l~~al~~~P~~~~a~~~lg~i~~~~g~~~~A~~~~~kA 548 (1173)
+-..+.+..++.+. .+.|..+ .++ .-..++..+|..+.....|++|.++|.+.
T Consensus 764 DLAielr~klgDwfrV~qL~r~g~~d~dD~-------------~~e~A~r~ig~~fa~~~~We~A~~yY~~~ 822 (1189)
T KOG2041|consen 764 DLAIELRKKLGDWFRVYQLIRNGGSDDDDE-------------GKEDAFRNIGETFAEMMEWEEAAKYYSYC 822 (1189)
T ss_pred hhhHHHHHhhhhHHHHHHHHHccCCCcchH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 43333333333222 1111111 011 12346777777777777788887777754
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.80 E-value=4.3 Score=40.63 Aligned_cols=135 Identities=10% Similarity=-0.012 Sum_probs=68.4
Q ss_pred CCCHHHHHHHHHHHHhhCCCc--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHH
Q 045024 105 GGKESLEVVVCREASDKSPRA--FWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTS----PHLWEALGLAYHRLGMFSA 178 (1173)
Q Consensus 105 ~g~~~~A~~~~~~al~~~p~~--~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~----~~~~~~la~~~~~~g~~~~ 178 (1173)
.++.++|+..|..+-+..-.. .-+.+..+.+..+.|+...|+..|.++-...|-. -.+...-+.+++..|.|++
T Consensus 71 ~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~d 150 (221)
T COG4649 71 ENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYDD 150 (221)
T ss_pred cCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHHH
Confidence 345555666555554443322 2344555666666666666666666654433211 1233444555566666666
Q ss_pred HHHHHHHHH-HhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCHHHHHHHHHHHHH
Q 045024 179 AIKSYGRAI-ELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLASGLLG 240 (1173)
Q Consensus 179 A~~~~~~al-~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~ 240 (1173)
-....+..- ..+|-...+...||..-.+.|++.+|...|..+.. +...+......+.+.+.
T Consensus 151 V~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~-Da~aprnirqRAq~mld 212 (221)
T COG4649 151 VSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN-DAQAPRNIRQRAQIMLD 212 (221)
T ss_pred HHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc-cccCcHHHHHHHHHHHH
Confidence 555444422 12233344555566666666666666666666554 33333333344444433
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=93.60 E-value=0.91 Score=45.22 Aligned_cols=85 Identities=14% Similarity=-0.040 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 045024 127 WAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLM 206 (1173)
Q Consensus 127 ~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~ 206 (1173)
..+..+..+-...++.+++...+..+--+.|..+..-..-|.+++..|++.+|+..++.+.+..|..+.+--.++.++..
T Consensus 11 ~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~ 90 (160)
T PF09613_consen 11 GGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYA 90 (160)
T ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHH
Confidence 34455555566667777777777777777777777777777777777777777777777777777777666677777777
Q ss_pred cCChH
Q 045024 207 LGNFR 211 (1173)
Q Consensus 207 ~g~~~ 211 (1173)
+|+.+
T Consensus 91 ~~D~~ 95 (160)
T PF09613_consen 91 LGDPS 95 (160)
T ss_pred cCChH
Confidence 66653
|
|
| >PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B | Back alignment and domain information |
|---|
Probab=93.50 E-value=0.66 Score=41.87 Aligned_cols=44 Identities=18% Similarity=0.059 Sum_probs=19.5
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCC
Q 045024 45 HFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSP 89 (1173)
Q Consensus 45 ~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p 89 (1173)
.+++.++.+|++..+.+.+|..+.. .|++++|++.+-.+++.++
T Consensus 10 al~~~~a~~P~D~~ar~~lA~~~~~-~g~~e~Al~~Ll~~v~~dr 53 (90)
T PF14561_consen 10 ALEAALAANPDDLDARYALADALLA-AGDYEEALDQLLELVRRDR 53 (90)
T ss_dssp HHHHHHHHSTT-HHHHHHHHHHHHH-TT-HHHHHHHHHHHHCC-T
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHhCc
Confidence 3444444444444444444444444 4444444444444444443
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=93.41 E-value=1 Score=44.84 Aligned_cols=72 Identities=18% Similarity=0.129 Sum_probs=30.0
Q ss_pred HCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 045024 104 HGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGM 175 (1173)
Q Consensus 104 ~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~ 175 (1173)
..++.+++...+..+--+.|+.+..-..-|.++...|+|.+|+.+|+.+....|..+.+--.++.++...|+
T Consensus 22 ~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D 93 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGD 93 (160)
T ss_pred ccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCC
Confidence 333444444444444334444444444444444444444444444444444444444444444444444443
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.32 E-value=5.7 Score=39.83 Aligned_cols=135 Identities=19% Similarity=0.212 Sum_probs=93.0
Q ss_pred cCCHHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCC--c--HHHHHHHHHHHHHcCCHHH
Q 045024 71 SIDTQRAIKCYQRAVSLSPDD--SVSGEALCELLEHGGKESLEVVVCREASDKSPR--A--FWAFRRLGYLQLHHKKWSE 144 (1173)
Q Consensus 71 ~g~~~eA~~~~~~al~~~p~~--~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~--~--~~a~~~la~~~~~~g~~~~ 144 (1173)
.+..++|+..|...-+-+-.. .-+.+..+.+....|+...|+..|.++-...|- - -.+...-+.++...|-|+.
T Consensus 71 ~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~d 150 (221)
T COG4649 71 ENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYDD 150 (221)
T ss_pred cCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHHH
Confidence 577788888887765544332 234677788888888888888888887655432 1 2345566777788888888
Q ss_pred HHHHHHHHH-HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 045024 145 AVQSLQHAI-RGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLM 206 (1173)
Q Consensus 145 A~~~l~~al-~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~ 206 (1173)
...-.+..- ..+|-...+.-.||..-.+.|++.+|.+.|.++.. +...+....+.+.+...
T Consensus 151 V~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~-Da~aprnirqRAq~mld 212 (221)
T COG4649 151 VSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN-DAQAPRNIRQRAQIMLD 212 (221)
T ss_pred HHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc-cccCcHHHHHHHHHHHH
Confidence 776665432 23455566777888888889999999999888766 54555555666665543
|
|
| >PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function | Back alignment and domain information |
|---|
Probab=93.26 E-value=1.3 Score=47.23 Aligned_cols=92 Identities=21% Similarity=0.198 Sum_probs=70.2
Q ss_pred cCCHHHHHHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHHHhcCC-------HHHHHHHHHHHHHcCCC------CHHH
Q 045024 535 RSDYQAAVVSYRLARYAISSSSGTVPNSHFQDISINLARSLSRAGN-------ALDAVRECESLERQGML------DAEV 601 (1173)
Q Consensus 535 ~g~~~~A~~~~~kAl~l~~~~pe~~~~~~~~~~~~~La~~~~~~g~-------~~eAi~~~~~~~~~~p~------~~~~ 601 (1173)
...+++|++.|.-|+-..+...+. ....+.++..+|.+|...|+ +..|++.|+++.+.... ....
T Consensus 90 ~Rt~~~ai~~YkLAll~~~~~~~~--~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l 167 (214)
T PF09986_consen 90 ERTLEEAIESYKLALLCAQIKKEK--PSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATL 167 (214)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCC--HHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHH
Confidence 457888999888887554443322 33567889999999999998 55677777777655322 1346
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhh
Q 045024 602 LQVYAFSLWQLGKYDLALSMARNLASS 628 (1173)
Q Consensus 602 ~~~la~a~~~~g~~~eA~~~~~~aL~~ 628 (1173)
++.+|.+..+.|++++|...|.+++..
T Consensus 168 ~YLigeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 168 LYLIGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHcC
Confidence 688999999999999999999999984
|
|
| >KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.19 E-value=0.27 Score=52.86 Aligned_cols=63 Identities=14% Similarity=0.076 Sum_probs=37.4
Q ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHH
Q 045024 71 SIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLG 133 (1173)
Q Consensus 71 ~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la 133 (1173)
.|+.++|...|+.|+.+.|.+++++..+|......++.-+|-.+|-+++.++|.+..++.+.+
T Consensus 129 ~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~ 191 (472)
T KOG3824|consen 129 DGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRA 191 (472)
T ss_pred ccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhh
Confidence 456666666666666666666666666666555555566666666666666666555554443
|
|
| >KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.18 E-value=6.2 Score=43.30 Aligned_cols=103 Identities=15% Similarity=0.103 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHHHhcCCHHHHH
Q 045024 506 QVFGAIQQAIQRGPHYPESHNLYGLVCEARSDYQAAVVSYRLARYAISSSSGTVPNSHFQDISINLARSLSRAGNALDAV 585 (1173)
Q Consensus 506 ~A~~~l~~al~~~P~~~~a~~~lg~i~~~~g~~~~A~~~~~kAl~l~~~~pe~~~~~~~~~~~~~La~~~~~~g~~~eAi 585 (1173)
+-+.....+++++|....++..++.- ..--..+|...|++|++..+. .++..+.....|...+|.
T Consensus 202 ~RI~~A~~ALeIN~eCA~AyvLLAEE--Ea~Ti~~AE~l~k~ALka~e~-------------~yr~sqq~qh~~~~~da~ 266 (556)
T KOG3807|consen 202 ARIKAAYQALEINNECATAYVLLAEE--EATTIVDAERLFKQALKAGET-------------IYRQSQQCQHQSPQHEAQ 266 (556)
T ss_pred HHHHHHHHHHhcCchhhhHHHhhhhh--hhhhHHHHHHHHHHHHHHHHH-------------HHhhHHHHhhhccchhhh
Confidence 45667777888889888888877653 334567888888888766442 222222222333332332
Q ss_pred HHHHHHHHcCCCCHH--HHHHHHHHHHHcCChHHHHHHHHHHhhhcc
Q 045024 586 RECESLERQGMLDAE--VLQVYAFSLWQLGKYDLALSMARNLASSVS 630 (1173)
Q Consensus 586 ~~~~~~~~~~p~~~~--~~~~la~a~~~~g~~~eA~~~~~~aL~~~p 630 (1173)
.+.+ .+.. ....++.+-.++|+..+|++.|+.+.+..|
T Consensus 267 ------~rRD-tnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~p 306 (556)
T KOG3807|consen 267 ------LRRD-TNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFP 306 (556)
T ss_pred ------hhcc-cchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcc
Confidence 1111 1222 224567777777888888888877766444
|
|
| >PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT | Back alignment and domain information |
|---|
Probab=93.05 E-value=2.8 Score=39.17 Aligned_cols=99 Identities=16% Similarity=0.053 Sum_probs=70.0
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHhhcCCCCCCCC---chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-------CCCC
Q 045024 529 GLVCEARSDYQAAVVSYRLARYAISSSSGTVPNS---HFQDISINLARSLSRAGNALDAVRECESLERQ-------GMLD 598 (1173)
Q Consensus 529 g~i~~~~g~~~~A~~~~~kAl~l~~~~pe~~~~~---~~~~~~~~La~~~~~~g~~~eAi~~~~~~~~~-------~p~~ 598 (1173)
|.-....|-|++|...++++.+.....|...... -.+..+-.|+..+...|+|++++...++++.. +.+.
T Consensus 16 ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qde 95 (144)
T PF12968_consen 16 AERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDE 95 (144)
T ss_dssp HHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTH
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhcccccccc
Confidence 3445567899999999999998877666543311 12456778999999999999988877777532 3333
Q ss_pred ----HHHHHHHHHHHHHcCChHHHHHHHHHHhh
Q 045024 599 ----AEVLQVYAFSLWQLGKYDLALSMARNLAS 627 (1173)
Q Consensus 599 ----~~~~~~la~a~~~~g~~~eA~~~~~~aL~ 627 (1173)
..+.+..+.++..+|+.++|+..|+.+-+
T Consensus 96 GklWIaaVfsra~Al~~~Gr~~eA~~~fr~agE 128 (144)
T PF12968_consen 96 GKLWIAAVFSRAVALEGLGRKEEALKEFRMAGE 128 (144)
T ss_dssp HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 23447788999999999999999998866
|
The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D. |
| >smart00028 TPR Tetratricopeptide repeats | Back alignment and domain information |
|---|
Probab=92.86 E-value=0.15 Score=34.86 Aligned_cols=33 Identities=24% Similarity=0.453 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 045024 419 DAWAHIGKLYGEVGEKKLARQAFDSARSIDPSL 451 (1173)
Q Consensus 419 ~a~~~Lg~~y~~~g~~e~A~~~f~~al~~~P~~ 451 (1173)
.++..+|.++...|++++|+..|+++++++|++
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~ 34 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCC
Confidence 467889999999999999999999999888763
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. |
| >PRK10941 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=92.84 E-value=0.85 Score=50.21 Aligned_cols=71 Identities=13% Similarity=0.200 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCHHHHH
Q 045024 162 LWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHY 232 (1173)
Q Consensus 162 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~ 232 (1173)
...++-.+|.+.++++.|+.+.+..+.+.|+++.-+.-.|.+|.++|.+..|...++..++..|+++.+..
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ 253 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEM 253 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHH
Confidence 45567788899999999999999999999999999999999999999999999999999999999987653
|
|
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.78 E-value=3.9 Score=43.61 Aligned_cols=213 Identities=11% Similarity=0.039 Sum_probs=131.9
Q ss_pred cCCHHHHHHHHHHHHhhCCCCHH----HHHHHHHHHHHCCCHHHHHHHHHHHHhhCC-----Cc-HHHHHHHHHHHHHcC
Q 045024 71 SIDTQRAIKCYQRAVSLSPDDSV----SGEALCELLEHGGKESLEVVVCREASDKSP-----RA-FWAFRRLGYLQLHHK 140 (1173)
Q Consensus 71 ~g~~~eA~~~~~~al~~~p~~~~----a~~~La~~~~~~g~~~~A~~~~~~al~~~p-----~~-~~a~~~la~~~~~~g 140 (1173)
..+.++|+..|++++++.+...+ ++-.+..++++.|++++-...|.+.+..-. +. ......+-..-....
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~ 119 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSK 119 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhh
Confidence 35899999999999999887654 467788899999999999999888764311 11 111111111111122
Q ss_pred CHHHHHHHHHHHHHh--CCCCHHHH----HHHHHHHHHcCCHHHHHHHHHHHHHhCCC------------ChHHHHHHHH
Q 045024 141 KWSEAVQSLQHAIRG--YPTSPHLW----EALGLAYHRLGMFSAAIKSYGRAIELDDT------------SIFPLLESGN 202 (1173)
Q Consensus 141 ~~~~A~~~l~~al~~--~p~~~~~~----~~la~~~~~~g~~~~A~~~~~~al~~~p~------------~~~a~~~la~ 202 (1173)
+.+--...|+..+.. +..+...| ..+|.+|+..|+|.+-.+.+.+.-..... -.+.+..-..
T Consensus 120 ~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQ 199 (440)
T KOG1464|consen 120 NMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQ 199 (440)
T ss_pred hhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhh
Confidence 222222233322221 11222233 46899999999998887777765543211 1344445567
Q ss_pred HHHHcCChHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHhhhcCChHHHHHHh
Q 045024 203 IFLMLGNFRKGVEQFQLALKISSENVSAHYGLASGLLGLAKQCINLGAFRWGASLLEDACKVAEANTRLAGNMSCIWKLH 282 (1173)
Q Consensus 203 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~l~~~~~a~g~~~~A~~~l~~Al~~~~~~~~~~~~~~~~~~~~ 282 (1173)
+|..+.+-.+-...|++++.+...-|.. ..+|.+...-|+.+...|.|++|..-|-+|.+-+..........-.-|..+
T Consensus 200 mYT~qKnNKkLK~lYeqalhiKSAIPHP-lImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVL 278 (440)
T KOG1464|consen 200 MYTEQKNNKKLKALYEQALHIKSAIPHP-LIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVL 278 (440)
T ss_pred hhhhhcccHHHHHHHHHHHHhhccCCch-HHHhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHH
Confidence 7888888888888999998775443322 256777777788888889999998888888877766544333333333333
Q ss_pred ch
Q 045024 283 GD 284 (1173)
Q Consensus 283 g~ 284 (1173)
++
T Consensus 279 AN 280 (440)
T KOG1464|consen 279 AN 280 (440)
T ss_pred HH
Confidence 33
|
|
| >PRK10941 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=92.38 E-value=1.2 Score=49.01 Aligned_cols=77 Identities=16% Similarity=0.128 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 045024 127 WAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNI 203 (1173)
Q Consensus 127 ~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~ 203 (1173)
....++-.++.+.++++.|+.+.+.++.+.|+++.-+...|.+|.+.|.+..|...++..++..|+++.+-.....+
T Consensus 182 Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql 258 (269)
T PRK10941 182 KLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQI 258 (269)
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHH
Confidence 34556777889999999999999999999999999999999999999999999999999999999998776544443
|
|
| >COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=92.21 E-value=12 Score=40.58 Aligned_cols=102 Identities=6% Similarity=-0.056 Sum_probs=72.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCCHH
Q 045024 526 NLYGLVCEARSDYQAAVVSYRLARYAISSSSGTVPNSHFQDISINLARSLSRAGNALDAVRECESLERQ-----GMLDAE 600 (1173)
Q Consensus 526 ~~lg~i~~~~g~~~~A~~~~~kAl~l~~~~pe~~~~~~~~~~~~~La~~~~~~g~~~eAi~~~~~~~~~-----~p~~~~ 600 (1173)
..+..++.+.|.|.+|+......+.-+....+ .+....++..-..+|.+..+..++...+..+... .|....
T Consensus 129 ~Kli~l~y~~~~YsdalalIn~ll~ElKk~DD---K~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlq 205 (421)
T COG5159 129 CKLIYLLYKTGKYSDALALINPLLHELKKYDD---KINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQ 205 (421)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHHhhcC---ccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHH
Confidence 46778889999999999998887765555433 4445567777788888888888888777766433 222222
Q ss_pred HH--HHHHHHHHHcCChHHHHHHHHHHhhhcc
Q 045024 601 VL--QVYAFSLWQLGKYDLALSMARNLASSVS 630 (1173)
Q Consensus 601 ~~--~~la~a~~~~g~~~eA~~~~~~aL~~~p 630 (1173)
+- +.-|...+...+|.-|..+|-.+++...
T Consensus 206 a~lDL~sGIlhcdd~dyktA~SYF~Ea~Egft 237 (421)
T COG5159 206 AQLDLLSGILHCDDRDYKTASSYFIEALEGFT 237 (421)
T ss_pred HHHHHhccceeeccccchhHHHHHHHHHhccc
Confidence 22 2335666777889999999999988554
|
|
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=92.21 E-value=0.8 Score=36.63 Aligned_cols=36 Identities=22% Similarity=0.196 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCHHHH
Q 045024 196 PLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAH 231 (1173)
Q Consensus 196 a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~ 231 (1173)
.++.+|..+.++|+|++|..+.+.+++..|+|..+.
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~ 38 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQ 38 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHH
Confidence 455666666677777777777777777777666554
|
|
| >KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.92 E-value=0.49 Score=50.99 Aligned_cols=63 Identities=19% Similarity=0.253 Sum_probs=33.0
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHH
Q 045024 138 HHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLES 200 (1173)
Q Consensus 138 ~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l 200 (1173)
+.|+.++|...|+.++.+.|++++++..+|......++.-+|-.+|-+++.++|.+.+++.+.
T Consensus 128 ~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR 190 (472)
T KOG3824|consen 128 KDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNR 190 (472)
T ss_pred hccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhh
Confidence 445555555555555555555555555555555555555555555555555555555444433
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=91.86 E-value=30 Score=40.20 Aligned_cols=129 Identities=8% Similarity=-0.071 Sum_probs=88.3
Q ss_pred HHHHHHHHHHHccCcHHHHHHHHHHHHHhCCCCHHHH-----HH-HHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHH
Q 045024 24 LHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAF-----RY-LGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEA 97 (1173)
Q Consensus 24 ~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~-----~~-lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~ 97 (1173)
.....|.++-.+++ +.+|.+.|.++.+...+.+..+ -. +-.+|+ .++.+.-.......-+..|..+....-
T Consensus 8 llc~Qgf~Lqkq~~-~~esEkifskI~~e~~~~~f~lkeEvl~grilnAff--l~nld~Me~~l~~l~~~~~~s~~l~LF 84 (549)
T PF07079_consen 8 LLCFQGFILQKQKK-FQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFF--LNNLDLMEKQLMELRQQFGKSAYLPLF 84 (549)
T ss_pred HHHHhhHHHHHHhh-hhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHH--HhhHHHHHHHHHHHHHhcCCchHHHHH
Confidence 34556777777776 8999999999886555543322 22 223333 467776666666666677888888888
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCCC---------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 045024 98 LCELLEHGGKESLEVVVCREASDKSPR---------------AFWAFRRLGYLQLHHKKWSEAVQSLQHAIRG 155 (1173)
Q Consensus 98 La~~~~~~g~~~~A~~~~~~al~~~p~---------------~~~a~~~la~~~~~~g~~~~A~~~l~~al~~ 155 (1173)
.|.+.++.+++.+|++.+......-.+ +...-...+.++...|++.++...+++.+..
T Consensus 85 ~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~ 157 (549)
T PF07079_consen 85 KALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIER 157 (549)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence 888889999999999888765443111 1222334677788899999999888887753
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=91.84 E-value=0.68 Score=37.01 Aligned_cols=37 Identities=14% Similarity=0.135 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHH
Q 045024 162 LWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLL 198 (1173)
Q Consensus 162 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~ 198 (1173)
.++.+|..+.+.|+|++|..+.+.+++.+|++..+..
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~ 39 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQS 39 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHH
Confidence 3455666666666666666666666666666655443
|
|
| >PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function | Back alignment and domain information |
|---|
Probab=91.65 E-value=1.5 Score=40.69 Aligned_cols=43 Identities=21% Similarity=0.292 Sum_probs=18.9
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 045024 145 AVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAI 187 (1173)
Q Consensus 145 A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 187 (1173)
+++.+.++..+.|..+..++.+|.-+.....|+++....++++
T Consensus 63 sve~~s~a~~Lsp~~A~~L~~la~~l~s~~~Ykk~v~kak~~L 105 (111)
T PF04781_consen 63 SVECFSRAVELSPDSAHSLFELASQLGSVKYYKKAVKKAKRGL 105 (111)
T ss_pred hHHHHHHHhccChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 3444444444444444444444444433334444444444443
|
|
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=91.17 E-value=51 Score=41.60 Aligned_cols=100 Identities=12% Similarity=-0.002 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--C-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---
Q 045024 126 FWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPT--S-------PHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTS--- 193 (1173)
Q Consensus 126 ~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~--~-------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--- 193 (1173)
|......+.......++.+|...+.++...-|. . .......|.+....|++++|++..+.++..-|.+
T Consensus 415 P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~ 494 (894)
T COG2909 415 PRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYR 494 (894)
T ss_pred chHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccch
Confidence 444455566666677777777777666554332 1 2333445666667777777777777777665543
Q ss_pred --hHHHHHHHHHHHHcCChHHHHHHHHHHHhhcC
Q 045024 194 --IFPLLESGNIFLMLGNFRKGVEQFQLALKISS 225 (1173)
Q Consensus 194 --~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p 225 (1173)
..++..+|.+..-.|++++|..+...+.+...
T Consensus 495 ~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~ 528 (894)
T COG2909 495 SRIVALSVLGEAAHIRGELTQALALMQQAEQMAR 528 (894)
T ss_pred hhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHH
Confidence 34555667777777777777777776666533
|
|
| >COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=90.97 E-value=7.2 Score=46.48 Aligned_cols=121 Identities=12% Similarity=-0.022 Sum_probs=75.5
Q ss_pred HHHHHHHHHhhCCCcHHHHHH--HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH-HH
Q 045024 111 EVVVCREASDKSPRAFWAFRR--LGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGR-AI 187 (1173)
Q Consensus 111 A~~~~~~al~~~p~~~~a~~~--la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~-al 187 (1173)
++..+...+..+|.++..... +...+...++...+.-.+...+..+|++..+..+++......|....+...+.. +.
T Consensus 50 ~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~ 129 (620)
T COG3914 50 AIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAE 129 (620)
T ss_pred HHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 444444444455555544222 355555666666777777777777777777777777777666665555555444 66
Q ss_pred HhCCCChHHHHHH------HHHHHHcCChHHHHHHHHHHHhhcCCCHHHH
Q 045024 188 ELDDTSIFPLLES------GNIFLMLGNFRKGVEQFQLALKISSENVSAH 231 (1173)
Q Consensus 188 ~~~p~~~~a~~~l------a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~ 231 (1173)
...|.+......+ +.....+|+..++....+++....|.++...
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~ 179 (620)
T COG3914 130 WLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVL 179 (620)
T ss_pred hcCcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhH
Confidence 6666665544444 6666677777777777777777777775443
|
|
| >KOG3783 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=90.92 E-value=41 Score=40.05 Aligned_cols=131 Identities=13% Similarity=0.030 Sum_probs=89.7
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--ChHHHHHHHHHHHHcCChHHHHHHHHHH
Q 045024 143 SEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDT--SIFPLLESGNIFLMLGNFRKGVEQFQLA 220 (1173)
Q Consensus 143 ~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~a~~~la~~~~~~g~~~~A~~~~~~a 220 (1173)
+...+.+.......|+++......+..+...|+.+.|+..++..++..-. ..-.++.+|.++.-+.+|..|...+...
T Consensus 250 ~~~~~~Ll~~~~~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~~L 329 (546)
T KOG3783|consen 250 EECEKALKKYRKRYPKGALWLLMEARILSIKGNSEAAIDMESLSIPIRMKQVKSLMVFERAWLSVGQHQYSRAADSFDLL 329 (546)
T ss_pred HHHHHHhHHHHHhCCCCccHHHHHHHHHHHcccHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 45555666666788988888888899999999988888888887761111 2334567888888899999999999998
Q ss_pred HhhcCCCHHHH-HHHHHHHHHHHHHHHH-hhcHHHHHHHHHHHHHHHHHHhhhcC
Q 045024 221 LKISSENVSAH-YGLASGLLGLAKQCIN-LGAFRWGASLLEDACKVAEANTRLAG 273 (1173)
Q Consensus 221 l~~~p~~~~a~-~~la~~~~~l~~~~~a-~g~~~~A~~~l~~Al~~~~~~~~~~~ 273 (1173)
.+.+.-+.-.+ +..|-+++...+.... .|+-+.+..+.+.............|
T Consensus 330 ~desdWS~a~Y~Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k~~~~l~~~a~K~~P 384 (546)
T KOG3783|consen 330 RDESDWSHAFYTYFAGCCLLQNWEVNQGAGGNEEKAQLYFKVGEELLANAGKNLP 384 (546)
T ss_pred HhhhhhhHHHHHHHHHHHHhccHHHHHhcccchhHHHHHHHHHHHHHHhccccCc
Confidence 77654333323 3344666655554444 45677777767776666665443333
|
|
| >PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT | Back alignment and domain information |
|---|
Probab=90.75 E-value=3.4 Score=38.63 Aligned_cols=109 Identities=14% Similarity=0.116 Sum_probs=71.0
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Q 045024 462 VQASESLVDDAFESCLRAVQILPLAEFQIGLAKLAKLSGHLSSSQVFGAIQQAIQRGPHYPESHNLYGLVCEARSDYQAA 541 (1173)
Q Consensus 462 ~~~~~g~~~eA~~~~~~al~~~p~~~~~~~la~l~~~~g~~~~~~A~~~l~~al~~~P~~~~a~~~lg~i~~~~g~~~~A 541 (1173)
-....|-+++|...++++++..... ..+++.. .+--|...+..|+..+...|+|+++
T Consensus 18 ~ql~~g~~~eAa~s~r~AM~~srti----------------P~eEaFD-------h~GFDA~chA~Ls~A~~~Lgry~e~ 74 (144)
T PF12968_consen 18 RQLQDGAYEEAAASCRKAMEVSRTI----------------PAEEAFD-------HDGFDAFCHAGLSGALAGLGRYDEC 74 (144)
T ss_dssp HHHHHT-HHHHHHHHHHHHHHHTTS-----------------TTS----------HHHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHhhhHHHHHHHHHHHHHHhccC----------------ChHhhcc-------cccHHHHHHHHHHHHHHhhccHHHH
Confidence 3346778888888888887753210 0011110 0011455677889999999999999
Q ss_pred HHHHHHHHHHhhcCCCCCC--CCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 045024 542 VVSYRLARYAISSSSGTVP--NSHFQDISINLARSLSRAGNALDAVRECESLER 593 (1173)
Q Consensus 542 ~~~~~kAl~l~~~~pe~~~--~~~~~~~~~~La~~~~~~g~~~eAi~~~~~~~~ 593 (1173)
+..-++++..++...+-.. ...+..+.++.+..+...|+.++|+..|+.+.+
T Consensus 75 L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agE 128 (144)
T PF12968_consen 75 LQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGE 128 (144)
T ss_dssp HHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 9999999887766533222 234556677889999999999999999998753
|
The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D. |
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=90.57 E-value=39 Score=39.22 Aligned_cols=123 Identities=6% Similarity=-0.054 Sum_probs=82.9
Q ss_pred HccCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHH
Q 045024 34 ENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVV 113 (1173)
Q Consensus 34 ~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~~g~~~~A~~ 113 (1173)
..|+ .-.|-+.+..++...|.+|......+.+... .|+|+.+...+..+-..-.....+...+.+.....|++++|..
T Consensus 301 ~~gd-~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~-lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s 378 (831)
T PRK15180 301 ADGD-IIAASQQLFAALRNQQQDPVLIQLRSVIFSH-LGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALS 378 (831)
T ss_pred hccC-HHHHHHHHHHHHHhCCCCchhhHHHHHHHHH-hhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHH
Confidence 3444 6666677777777777777777777777777 7887777777665544433444445555566667777777777
Q ss_pred HHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 045024 114 VCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPT 158 (1173)
Q Consensus 114 ~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~ 158 (1173)
..+-++...-++++....-+.....+|-++++....++.+.++|.
T Consensus 379 ~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~ 423 (831)
T PRK15180 379 TAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPE 423 (831)
T ss_pred HHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCCh
Confidence 777777666566666555555556667777777777777777664
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=90.49 E-value=2.8 Score=41.11 Aligned_cols=80 Identities=11% Similarity=-0.041 Sum_probs=54.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCh
Q 045024 131 RLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNF 210 (1173)
Q Consensus 131 ~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~ 210 (1173)
.....-...++.+++...+..+--+.|+.++.-..-|.+++..|++++|+..++...+..+..+...-.++.++..+|+.
T Consensus 15 ~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~Dp 94 (153)
T TIGR02561 15 EVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGDA 94 (153)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCCh
Confidence 33344445677777777777776777777777777777777777777777777777666666666666666676666665
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=90.43 E-value=3.3 Score=42.69 Aligned_cols=101 Identities=16% Similarity=0.025 Sum_probs=78.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCH
Q 045024 522 PESHNLYGLVCEARSDYQAAVVSYRLARYAISSSSGTVPNSHFQDISINLARSLSRAGNALDAVRECESLERQ--GMLDA 599 (1173)
Q Consensus 522 ~~a~~~lg~i~~~~g~~~~A~~~~~kAl~l~~~~pe~~~~~~~~~~~~~La~~~~~~g~~~eAi~~~~~~~~~--~p~~~ 599 (1173)
..++..+|..|.+.|+.++|++.|.++.+.. ....+....++.+.++....|++........++... .+.+.
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~------~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~ 109 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYC------TSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDW 109 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhc------CCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchH
Confidence 3578899999999999999999999985431 114456678999999999999999999998888543 22222
Q ss_pred H----HHHHHHHHHHHcCChHHHHHHHHHHhhh
Q 045024 600 E----VLQVYAFSLWQLGKYDLALSMARNLASS 628 (1173)
Q Consensus 600 ~----~~~~la~a~~~~g~~~eA~~~~~~aL~~ 628 (1173)
+ ....-|..+...++|.+|.+.|-.+...
T Consensus 110 ~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t 142 (177)
T PF10602_consen 110 ERRNRLKVYEGLANLAQRDFKEAAELFLDSLST 142 (177)
T ss_pred HHHHHHHHHHHHHHHHhchHHHHHHHHHccCcC
Confidence 2 2245678888899999999999877653
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >smart00028 TPR Tetratricopeptide repeats | Back alignment and domain information |
|---|
Probab=90.38 E-value=0.41 Score=32.57 Aligned_cols=30 Identities=33% Similarity=0.579 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHhhCC
Q 045024 59 AFRYLGHYYTRFSIDTQRAIKCYQRAVSLSP 89 (1173)
Q Consensus 59 a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p 89 (1173)
++..+|.++.. .|++++|...|+++++.+|
T Consensus 3 ~~~~~a~~~~~-~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 3 ALYNLGNAYLK-LGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHH-HhhHHHHHHHHHHHHccCC
Confidence 34445555555 5555555555555555444
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. |
| >KOG2422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=90.36 E-value=19 Score=42.83 Aligned_cols=152 Identities=14% Similarity=0.108 Sum_probs=93.1
Q ss_pred HHHHHHHHHHHHHh------------CCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhh-------------------
Q 045024 39 KEKAAEHFVIAAKL------------NPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSL------------------- 87 (1173)
Q Consensus 39 ~~~A~~~~~~al~~------------~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~------------------- 87 (1173)
|++|...|.-+... .|-..+.+..++.+... +|+.+-|....++++=.
T Consensus 254 Yeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~-qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL~ 332 (665)
T KOG2422|consen 254 YEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRF-QGDREMAADLIERGLYVFDRALHPNFIPFSGNCRLP 332 (665)
T ss_pred HHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHH-hcchhhHHHHHHHHHHHHHHHhccccccccccccCc
Confidence 67788877777643 34456888899999999 99988877777776521
Q ss_pred --CCCCHHH---HHHHHHHHHHCCCHHHHHHHHHHHHhhCCC-cHHHHHHHHHHH-HHcCCHHHHHHHHHHHHH-----h
Q 045024 88 --SPDDSVS---GEALCELLEHGGKESLEVVVCREASDKSPR-AFWAFRRLGYLQ-LHHKKWSEAVQSLQHAIR-----G 155 (1173)
Q Consensus 88 --~p~~~~a---~~~La~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~la~~~-~~~g~~~~A~~~l~~al~-----~ 155 (1173)
.|.|-.. .+.....+.+.|-+..|.++++-++.++|. +|.+...+..+| ++..+|+=-+..++..-. .
T Consensus 333 y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~ 412 (665)
T KOG2422|consen 333 YIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQ 412 (665)
T ss_pred ccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhh
Confidence 1222222 223334445667778888888888888776 666555555544 455566666666655422 2
Q ss_pred CCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCC
Q 045024 156 YPTSPHLWEALGLAYHRLGM---FSAAIKSYGRAIELDDT 192 (1173)
Q Consensus 156 ~p~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~p~ 192 (1173)
-|+ ...-..+|..|..... ...|...+.+|+...|.
T Consensus 413 ~PN-~~yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P~ 451 (665)
T KOG2422|consen 413 LPN-FGYSLALARFFLRKNEEDDRQSALNALLQALKHHPL 451 (665)
T ss_pred cCC-chHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhCcH
Confidence 232 2233455666655544 45566667777766653
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=90.00 E-value=9.9 Score=37.41 Aligned_cols=68 Identities=13% Similarity=0.039 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCC
Q 045024 39 KEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGK 107 (1173)
Q Consensus 39 ~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~~g~ 107 (1173)
++++...+...--+.|+.++.-..-|.++.. .|+|.+|+..|+...+..+..+...-.++.++...||
T Consensus 26 ~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~-rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~D 93 (153)
T TIGR02561 26 PYDAQAMLDALRVLRPNLKELDMFDGWLLIA-RGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGD 93 (153)
T ss_pred HHHHHHHHHHHHHhCCCccccchhHHHHHHH-cCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCC
Confidence 5555555555555566666666666666666 6666666666666555555555555555555555544
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >KOG3783 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=90.00 E-value=12 Score=44.33 Aligned_cols=234 Identities=15% Similarity=0.031 Sum_probs=121.4
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHccCCHHHHHHHHHH
Q 045024 8 LLQLEDSLEANPDDPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQ----NAVAFRYLGHYYTRFSIDTQRAIKCYQR 83 (1173)
Q Consensus 8 i~~l~~al~~~P~~~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~----~~~a~~~lg~~~~~~~g~~~eA~~~~~~ 83 (1173)
.+.+.......|+++...+..+..+...|+ .+.|+..++..+. +. ..-.++.+|.++.. +.+|.+|...+..
T Consensus 253 ~~~Ll~~~~~~p~ga~wll~~ar~l~~~g~-~eaa~~~~~~~v~--~~~kQ~~~l~~fE~aw~~v~-~~~~~~aad~~~~ 328 (546)
T KOG3783|consen 253 EKALKKYRKRYPKGALWLLMEARILSIKGN-SEAAIDMESLSIP--IRMKQVKSLMVFERAWLSVG-QHQYSRAADSFDL 328 (546)
T ss_pred HHHhHHHHHhCCCCccHHHHHHHHHHHccc-HHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHHH-HHHHHHHhhHHHH
Confidence 455566666777777777777777777777 6777777777665 21 12355677777777 7778888877777
Q ss_pred HHhhCCCCHHHHHHHH-HHHHH--------CCCHHHHHHHHHHH---HhhCCCcHHH---HHHHHHHHHHcCCHHHHHHH
Q 045024 84 AVSLSPDDSVSGEALC-ELLEH--------GGKESLEVVVCREA---SDKSPRAFWA---FRRLGYLQLHHKKWSEAVQS 148 (1173)
Q Consensus 84 al~~~p~~~~a~~~La-~~~~~--------~g~~~~A~~~~~~a---l~~~p~~~~a---~~~la~~~~~~g~~~~A~~~ 148 (1173)
..+.+.-..-.+..++ -++.. .|+-+.|..+++.. +...|.+... ..+.+.-+...+.
T Consensus 329 L~desdWS~a~Y~Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k~~~~l~~~a~K~~P~E~f~~RKverf~~~~~------- 401 (546)
T KOG3783|consen 329 LRDESDWSHAFYTYFAGCCLLQNWEVNQGAGGNEEKAQLYFKVGEELLANAGKNLPLEKFIVRKVERFVKRGP------- 401 (546)
T ss_pred HHhhhhhhHHHHHHHHHHHHhccHHHHHhcccchhHHHHHHHHHHHHHHhccccCchhHHHHHHHHHHhcccc-------
Confidence 7665543333333333 22211 22333333333322 2222222110 0111111111110
Q ss_pred HHHHHHhCCCCHH--HHHHHHHHHHH--cCCHHHHHHHHHHHHH---h-CCCC-hHHHHHHHHHHHHcCChHHHHHHHHH
Q 045024 149 LQHAIRGYPTSPH--LWEALGLAYHR--LGMFSAAIKSYGRAIE---L-DDTS-IFPLLESGNIFLMLGNFRKGVEQFQL 219 (1173)
Q Consensus 149 l~~al~~~p~~~~--~~~~la~~~~~--~g~~~~A~~~~~~al~---~-~p~~-~~a~~~la~~~~~~g~~~~A~~~~~~ 219 (1173)
.++..+. .++.++.++-. ....++.. -++...+ . ++++ .--++.+|.++..+|+...|..+|..
T Consensus 402 ------~~~~~~la~P~~El~Y~Wngf~~~s~~~l~-k~~~~~~~~~~~d~Dd~~lk~lL~g~~lR~Lg~~~~a~~~f~i 474 (546)
T KOG3783|consen 402 ------LNASILLASPYYELAYFWNGFSRMSKNELE-KMRAELENPKIDDSDDEGLKYLLKGVILRNLGDSEVAPKCFKI 474 (546)
T ss_pred ------ccccccccchHHHHHHHHhhcccCChhhHH-HHHHHHhccCCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 1111111 12333333321 12222222 1222221 1 2222 23356789999999999999999998
Q ss_pred HHhhcC---C----CHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHH
Q 045024 220 ALKISS---E----NVSAHYGLASGLLGLAKQCINLGAFRWGASLLEDACKVA 265 (1173)
Q Consensus 220 al~~~p---~----~~~a~~~la~~~~~l~~~~~a~g~~~~A~~~l~~Al~~~ 265 (1173)
.++... . -|.++|.+|..+..++. -+.++..++.+|.+.+
T Consensus 475 ~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g------~~~e~~~~L~kAr~~~ 521 (546)
T KOG3783|consen 475 QVEKESKRTEDLWAVPFALYELALLYWDLGG------GLKEARALLLKAREYA 521 (546)
T ss_pred HHHHHHhhccccccccHHHHHHHHHHHhccc------ChHHHHHHHHHHHhhc
Confidence 885321 1 14567777777666544 3677777777776654
|
|
| >COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=89.86 E-value=11 Score=44.87 Aligned_cols=133 Identities=17% Similarity=0.050 Sum_probs=104.3
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHH--HHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHH
Q 045024 141 KWSEAVQSLQHAIRGYPTSPHLWEA--LGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQ 218 (1173)
Q Consensus 141 ~~~~A~~~l~~al~~~p~~~~~~~~--la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~ 218 (1173)
...-++..+...+.++|.++..+.. +...+...++...+.-.+...+..+|++..+..+++......|....+...+.
T Consensus 46 ~~~~~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~ 125 (620)
T COG3914 46 LQALAIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADIS 125 (620)
T ss_pred chhHHHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHH
Confidence 3334666666677788888887544 46677778999999999999999999999999999999888888877776666
Q ss_pred H-HHhhcCCCHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHhhhcCC
Q 045024 219 L-ALKISSENVSAHYGLASGLLGLAKQCINLGAFRWGASLLEDACKVAEANTRLAGN 274 (1173)
Q Consensus 219 ~-al~~~p~~~~a~~~la~~~~~l~~~~~a~g~~~~A~~~l~~Al~~~~~~~~~~~~ 274 (1173)
. +....|.+......+...+. .++.....+...++....+.+.+..++.......
T Consensus 126 ~~a~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~ 181 (620)
T COG3914 126 EIAEWLSPDNAEFLGHLIRFYQ-LGRYLKLLGRTAEAELALERAVDLLPKYPRVLGA 181 (620)
T ss_pred HHHHhcCcchHHHHhhHHHHHH-HHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhH
Confidence 6 77888998887777766666 8888888888888888888888777766444333
|
|
| >KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=89.74 E-value=38 Score=37.84 Aligned_cols=107 Identities=14% Similarity=0.024 Sum_probs=74.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH----hCC--CChHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCHHHHHHHHH
Q 045024 163 WEALGLAYHRLGMFSAAIKSYGRAIE----LDD--TSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLAS 236 (1173)
Q Consensus 163 ~~~la~~~~~~g~~~~A~~~~~~al~----~~p--~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~ 236 (1173)
-..+..+|...++|.+|+......+. ++. .-++++..-..+|+.+.+..+|...+..+-.....---.-...|.
T Consensus 131 earli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa~ 210 (411)
T KOG1463|consen 131 EARLIRLYNDTKRYTEALALINDLLRELKKLDDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQAT 210 (411)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHHH
Confidence 34678889999999999888776654 222 235667777888999999999988887765432111001113455
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHh
Q 045024 237 GLLGLAKQCINLGAFRWGASLLEDACKVAEANT 269 (1173)
Q Consensus 237 ~~~~l~~~~~a~g~~~~A~~~l~~Al~~~~~~~ 269 (1173)
+-+..|-.+.+..+|..|..+|-+|.+-|....
T Consensus 211 lDLqSGIlha~ekDykTafSYFyEAfEgf~s~~ 243 (411)
T KOG1463|consen 211 LDLQSGILHAAEKDYKTAFSYFYEAFEGFDSLD 243 (411)
T ss_pred HHHhccceeecccccchHHHHHHHHHccccccC
Confidence 666677777777889999999999988766543
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=89.72 E-value=2.9 Score=43.18 Aligned_cols=101 Identities=17% Similarity=0.146 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---ChHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCHHHHHHHHHH
Q 045024 161 HLWEALGLAYHRLGMFSAAIKSYGRAIELDDT---SIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLASG 237 (1173)
Q Consensus 161 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~ 237 (1173)
.++..+|..|.+.|+.+.|++.|.++.+.... -.+.++.+..+....|++.....+..++-..... ...+.....+
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~-~~d~~~~nrl 115 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEK-GGDWERRNRL 115 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhc-cchHHHHHHH
Confidence 45566777777777777777777776654332 2345566666666677777777666666543222 1112222223
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHH
Q 045024 238 LLGLAKQCINLGAFRWGASLLEDAC 262 (1173)
Q Consensus 238 ~~~l~~~~~a~g~~~~A~~~l~~Al 262 (1173)
-...|-.....++|..|...|-++.
T Consensus 116 k~~~gL~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 116 KVYEGLANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHHHHHHhchHHHHHHHHHccC
Confidence 3333334444555655555544443
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.71 E-value=3.6 Score=53.41 Aligned_cols=175 Identities=15% Similarity=0.098 Sum_probs=130.4
Q ss_pred HHHHHHHHHHCCCHHHHHH------HHHH-HHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCC
Q 045024 95 GEALCELLEHGGKESLEVV------VCRE-ASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRG--------YPTS 159 (1173)
Q Consensus 95 ~~~La~~~~~~g~~~~A~~------~~~~-al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~--------~p~~ 159 (1173)
....+......|.+.+|.+ .+.+ .-.+.|.....+..++.++...|++++|+..-.++.-+ .|+.
T Consensus 935 ~~e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t 1014 (1236)
T KOG1839|consen 935 SPEQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNT 1014 (1236)
T ss_pred hhhhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHH
Confidence 4455566666777777776 5542 23446778889999999999999999999988776543 2455
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCHH-H
Q 045024 160 PHLWEALGLAYHRLGMFSAAIKSYGRAIEL--------DDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVS-A 230 (1173)
Q Consensus 160 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~-a 230 (1173)
...+.+++...+..++...|...+.++..+ .|.-.....+++.++...++++.|+.+.+.+......-.. -
T Consensus 1015 ~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~ 1094 (1236)
T KOG1839|consen 1015 KLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPK 1094 (1236)
T ss_pred HHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCcc
Confidence 667888888888899999999999988875 2344445567888888999999999999999885432111 1
Q ss_pred HHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHh
Q 045024 231 HYGLASGLLGLAKQCINLGAFRWGASLLEDACKVAEANT 269 (1173)
Q Consensus 231 ~~~la~~~~~l~~~~~a~g~~~~A~~~l~~Al~~~~~~~ 269 (1173)
...-+.++...++.....+++..|......+..++....
T Consensus 1095 ~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~iy~~ql 1133 (1236)
T KOG1839|consen 1095 ELETALSYHALARLFESMKDFRNALEHEKVTYGIYKEQL 1133 (1236)
T ss_pred chhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHHHHHHhh
Confidence 224456777778888888889988888888888777654
|
|
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.97 E-value=0.57 Score=48.72 Aligned_cols=57 Identities=21% Similarity=0.278 Sum_probs=34.0
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCC
Q 045024 171 HRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSEN 227 (1173)
Q Consensus 171 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 227 (1173)
.+.|+.+.|.+.|.+++++.|.....|+.+|....+.|+++.|...|++.++++|.+
T Consensus 6 ~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 6 AESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred cccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 345555666666666666666666666666666666666666666666666665554
|
|
| >PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function | Back alignment and domain information |
|---|
Probab=88.95 E-value=6.3 Score=41.95 Aligned_cols=86 Identities=12% Similarity=-0.069 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcC--CCCC--CCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 045024 522 PESHNLYGLVCEARSDYQAAVVSYRLARYAISSS--SGTV--PNSHFQDISINLARSLSRAGNALDAVRECESLERQGML 597 (1173)
Q Consensus 522 ~~a~~~lg~i~~~~g~~~~A~~~~~kAl~l~~~~--pe~~--~~~~~~~~~~~La~~~~~~g~~~eAi~~~~~~~~~~p~ 597 (1173)
...+..+|++|...|+.+....++++|+...... .++. ....-..+.+.+|.+..+.|++++|+..|.+++...-.
T Consensus 118 A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~ 197 (214)
T PF09986_consen 118 AGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKA 197 (214)
T ss_pred HHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCC
Confidence 4466788999999999777777777666654433 1111 12234568889999999999999999999999865433
Q ss_pred C-HHHHHHHHH
Q 045024 598 D-AEVLQVYAF 607 (1173)
Q Consensus 598 ~-~~~~~~la~ 607 (1173)
+ +..+..+|+
T Consensus 198 s~~~~l~~~AR 208 (214)
T PF09986_consen 198 SKEPKLKDMAR 208 (214)
T ss_pred CCcHHHHHHHH
Confidence 3 234444443
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=88.52 E-value=0.88 Score=33.87 Aligned_cols=30 Identities=23% Similarity=0.302 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 045024 418 ADAWAHIGKLYGEVGEKKLARQAFDSARSI 447 (1173)
Q Consensus 418 ~~a~~~Lg~~y~~~g~~e~A~~~f~~al~~ 447 (1173)
..++.++|.+|...|++++|..++++++.+
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 356788999999999999999999998875
|
|
| >KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=88.24 E-value=7.1 Score=37.58 Aligned_cols=72 Identities=14% Similarity=-0.009 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHHcCC---HHHHHHHHHHHHH-hCCC-ChHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCHHHH
Q 045024 160 PHLWEALGLAYHRLGM---FSAAIKSYGRAIE-LDDT-SIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAH 231 (1173)
Q Consensus 160 ~~~~~~la~~~~~~g~---~~~A~~~~~~al~-~~p~-~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~ 231 (1173)
....++++.++....+ ..+.+..++..++ -.|. .-+..+.++..+++.++|++++.+.+..++..|+|..+.
T Consensus 32 ~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~ 108 (149)
T KOG3364|consen 32 KQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQAL 108 (149)
T ss_pred HHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHH
Confidence 4567778888877554 4567888888886 4443 456778888899999999999999999999999988765
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=88.12 E-value=0.93 Score=33.74 Aligned_cols=29 Identities=21% Similarity=0.101 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 045024 566 DISINLARSLSRAGNALDAVRECESLERQ 594 (1173)
Q Consensus 566 ~~~~~La~~~~~~g~~~eAi~~~~~~~~~ 594 (1173)
.++.++|.+|...|++++|+..++++++.
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 46677777888888888887777777643
|
|
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.57 E-value=0.74 Score=47.94 Aligned_cols=59 Identities=24% Similarity=0.272 Sum_probs=43.0
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Q 045024 136 QLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSI 194 (1173)
Q Consensus 136 ~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 194 (1173)
....++.+.|.+.|.+++.+-|.....|+.+|....+.|+++.|.+.|++.++++|.+.
T Consensus 5 ~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~ 63 (287)
T COG4976 5 LAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH 63 (287)
T ss_pred hcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence 44566777777777777777777777777777777777777777777777777777653
|
|
| >KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=87.46 E-value=11 Score=43.01 Aligned_cols=166 Identities=16% Similarity=0.134 Sum_probs=120.4
Q ss_pred HccCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-----------cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 045024 34 ENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRF-----------SIDTQRAIKCYQRAVSLSPDDSVSGEALCELL 102 (1173)
Q Consensus 34 ~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~-----------~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~ 102 (1173)
+.+.--+++++.=.+.+..+|+...+|...-.++... ..-.++-+.+...+++.+|+.-.+|.....++
T Consensus 40 ~~~~yd~e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npksY~aW~hR~w~L 119 (421)
T KOG0529|consen 40 EAKEYDEEHLELTSELLEKNPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKSYGAWHHRKWVL 119 (421)
T ss_pred hccccchHHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence 3444236777777777788888777776554444330 22456778889999999999999999999999
Q ss_pred HHCCC--HHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----
Q 045024 103 EHGGK--ESLEVVVCREASDKSPRAFWAFRRLGYLQLH----HKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHR---- 172 (1173)
Q Consensus 103 ~~~g~--~~~A~~~~~~al~~~p~~~~a~~~la~~~~~----~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~---- 172 (1173)
.+.+. +..-++.++++++.+|.+..+|...=.+... .....+-+++..+++..++.|..+|.....++..
T Consensus 120 ~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El~ftt~~I~~nfSNYsaWhyRs~lL~~l~~~ 199 (421)
T KOG0529|consen 120 QKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEELEFTTKLINDNFSNYSAWHYRSLLLSTLHPK 199 (421)
T ss_pred HhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHHHHHHHHHhccchhhhHHHHHHHHHHHhccc
Confidence 87764 6888999999999999986665443333322 2336677888899999999999999887766652
Q ss_pred --cCC------HHHHHHHHHHHHHhCCCChHHHHH
Q 045024 173 --LGM------FSAAIKSYGRAIELDDTSIFPLLE 199 (1173)
Q Consensus 173 --~g~------~~~A~~~~~~al~~~p~~~~a~~~ 199 (1173)
.|+ ...-++....++-.+|++..+|+.
T Consensus 200 ~~~g~~~~~~~l~sEle~v~saiFTdp~DqS~WfY 234 (421)
T KOG0529|consen 200 EADGNFMPKELLQSELEMVHSAIFTDPEDQSCWFY 234 (421)
T ss_pred cccCccCCHHHHHHHHHHHHHHHhcCccccceeee
Confidence 342 234456667777889999888876
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.30 E-value=1.6 Score=50.66 Aligned_cols=96 Identities=17% Similarity=0.077 Sum_probs=80.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCC
Q 045024 133 GYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRL---GMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGN 209 (1173)
Q Consensus 133 a~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~---g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~ 209 (1173)
|.-.+..+....|+..|.+++...|.....+.+.+.++++. |+.-.|+.....+++++|....+++.++.++..+++
T Consensus 381 gnd~ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r 460 (758)
T KOG1310|consen 381 GNDGLYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTR 460 (758)
T ss_pred ccchhhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhh
Confidence 33334445678889999999999999999999988888874 677788888889999999999999999999999999
Q ss_pred hHHHHHHHHHHHhhcCCCH
Q 045024 210 FRKGVEQFQLALKISSENV 228 (1173)
Q Consensus 210 ~~~A~~~~~~al~~~p~~~ 228 (1173)
+.+|++....+....|.+.
T Consensus 461 ~~eal~~~~alq~~~Ptd~ 479 (758)
T KOG1310|consen 461 YLEALSCHWALQMSFPTDV 479 (758)
T ss_pred HHHhhhhHHHHhhcCchhh
Confidence 9999998888777777554
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=86.62 E-value=5.2 Score=41.53 Aligned_cols=75 Identities=12% Similarity=0.075 Sum_probs=49.9
Q ss_pred cCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCC----cHHHHHHHHHHHHHcCCHHHH
Q 045024 71 SIDTQRAIKCYQRAVSLS-PDDSVSGEALCELLEHGGKESLEVVVCREASDKSPR----AFWAFRRLGYLQLHHKKWSEA 145 (1173)
Q Consensus 71 ~g~~~eA~~~~~~al~~~-p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~----~~~a~~~la~~~~~~g~~~~A 145 (1173)
.-.-++|...|-++-... -++++..+.+|..|. ..+.++++..+.++++..+. +++.+..++.++..+|+++.|
T Consensus 119 r~~d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 119 RFGDQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred ccCcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 333456666665543221 245666777776666 55778888888888777543 477888888888888888777
Q ss_pred H
Q 045024 146 V 146 (1173)
Q Consensus 146 ~ 146 (1173)
-
T Consensus 198 Y 198 (203)
T PF11207_consen 198 Y 198 (203)
T ss_pred h
Confidence 4
|
|
| >PF12862 Apc5: Anaphase-promoting complex subunit 5 | Back alignment and domain information |
|---|
Probab=86.58 E-value=3.2 Score=37.79 Aligned_cols=64 Identities=22% Similarity=0.143 Sum_probs=45.6
Q ss_pred HHHHcCCHHHHHHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 045024 531 VCEARSDYQAAVVSYRLARYAISSSSGTVPNSHFQDISINLARSLSRAGNALDAVRECESLERQ 594 (1173)
Q Consensus 531 i~~~~g~~~~A~~~~~kAl~l~~~~pe~~~~~~~~~~~~~La~~~~~~g~~~eAi~~~~~~~~~ 594 (1173)
...+.|++.+|++.+.+..+.............+..+..++|.+....|++++|+..++++++.
T Consensus 7 ~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 7 NALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 3467899999999999887765443221111245567778888888888888888888888755
|
|
| >KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=86.42 E-value=12 Score=35.98 Aligned_cols=33 Identities=12% Similarity=0.215 Sum_probs=14.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 045024 129 FRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPH 161 (1173)
Q Consensus 129 ~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~ 161 (1173)
.+.++..+++.++|+.++.+.+..++..|+|..
T Consensus 74 lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Q 106 (149)
T KOG3364|consen 74 LYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQ 106 (149)
T ss_pred hhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHH
Confidence 334444444444444444444444444444433
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=86.31 E-value=2.2 Score=49.65 Aligned_cols=87 Identities=24% Similarity=0.209 Sum_probs=51.4
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHH
Q 045024 72 IDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHG---GKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQS 148 (1173)
Q Consensus 72 g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~~---g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~ 148 (1173)
+....|+..|.+++...|.....+...+.++++. |+.-.|+.-+..+++++|....+++.++.++...+++.+|+..
T Consensus 388 ~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~~eal~~ 467 (758)
T KOG1310|consen 388 SIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTRYLEALSC 467 (758)
T ss_pred HHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHHHhhhh
Confidence 3445566666666666666666655555555443 3455555555666666666666666666666666666666666
Q ss_pred HHHHHHhCCC
Q 045024 149 LQHAIRGYPT 158 (1173)
Q Consensus 149 l~~al~~~p~ 158 (1173)
...+....|.
T Consensus 468 ~~alq~~~Pt 477 (758)
T KOG1310|consen 468 HWALQMSFPT 477 (758)
T ss_pred HHHHhhcCch
Confidence 5555555553
|
|
| >KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only] | Back alignment and domain information |
|---|
Probab=86.28 E-value=5.5 Score=51.83 Aligned_cols=163 Identities=17% Similarity=0.181 Sum_probs=119.6
Q ss_pred HHHHHHHHHHHHccCCHHHHHH------HHHH-HHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--------C
Q 045024 58 VAFRYLGHYYTRFSIDTQRAIK------CYQR-AVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDK--------S 122 (1173)
Q Consensus 58 ~a~~~lg~~~~~~~g~~~eA~~------~~~~-al~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~--------~ 122 (1173)
.-....|..... .|.+.+|.+ .+.+ .-.+.|.....+..++.++...|++++|+....++.-. .
T Consensus 933 ~~~~e~gq~~~~-e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds 1011 (1236)
T KOG1839|consen 933 KDSPEQGQEALL-EDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDS 1011 (1236)
T ss_pred hhhhhhhhhhhc-ccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCC
Confidence 345667777777 888888887 4442 22346777888999999999999999999998777433 2
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--
Q 045024 123 PRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRG--------YPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDT-- 192 (1173)
Q Consensus 123 p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-- 192 (1173)
|+....+..++...+..++...|+..+.++..+ .|.-.....+++.++...++++.|+++.+.|+.....
T Consensus 1012 ~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~ 1091 (1236)
T KOG1839|consen 1012 PNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVL 1091 (1236)
T ss_pred HHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhc
Confidence 445677888888888899999999999988764 3555556678888888899999999999999986432
Q ss_pred ------ChHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 045024 193 ------SIFPLLESGNIFLMLGNFRKGVEQFQLAL 221 (1173)
Q Consensus 193 ------~~~a~~~la~~~~~~g~~~~A~~~~~~al 221 (1173)
....+..+++.+...+++..|....+...
T Consensus 1092 g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~ 1126 (1236)
T KOG1839|consen 1092 GPKELETALSYHALARLFESMKDFRNALEHEKVTY 1126 (1236)
T ss_pred CccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHH
Confidence 23344555666666666666555554443
|
|
| >KOG4814 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=86.11 E-value=4.9 Score=47.91 Aligned_cols=102 Identities=16% Similarity=0.055 Sum_probs=86.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHH
Q 045024 526 NLYGLVCEARSDYQAAVVSYRLARYAISSSSGTVPNSHFQDISINLARSLSRAGNALDAVRECESLERQGMLDAEVLQVY 605 (1173)
Q Consensus 526 ~~lg~i~~~~g~~~~A~~~~~kAl~l~~~~pe~~~~~~~~~~~~~La~~~~~~g~~~eAi~~~~~~~~~~p~~~~~~~~l 605 (1173)
-+-|.-.++..+|..+++.|+..+..+. .+....+|+....+++-+|....+.+.|+++++++-+.+|.++-.....
T Consensus 358 Wn~A~~~F~~~~Y~~s~~~y~~Sl~~i~---~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~ 434 (872)
T KOG4814|consen 358 WNTAKKLFKMEKYVVSIRFYKLSLKDII---SDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLM 434 (872)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHhcc---chhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHH
Confidence 3456667788999999999998865443 3334677899999999999999999999999999999999999888888
Q ss_pred HHHHHHcCChHHHHHHHHHHhhhcc
Q 045024 606 AFSLWQLGKYDLALSMARNLASSVS 630 (1173)
Q Consensus 606 a~a~~~~g~~~eA~~~~~~aL~~~p 630 (1173)
-.+....|.-++|+.......+...
T Consensus 435 ~~~~~~E~~Se~AL~~~~~~~s~~~ 459 (872)
T KOG4814|consen 435 LQSFLAEDKSEEALTCLQKIKSSED 459 (872)
T ss_pred HHHHHHhcchHHHHHHHHHHHhhhc
Confidence 8999999999999999998877543
|
|
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=85.71 E-value=83 Score=37.20 Aligned_cols=178 Identities=16% Similarity=0.139 Sum_probs=109.2
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-
Q 045024 44 EHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKS- 122 (1173)
Q Consensus 44 ~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~- 122 (1173)
....+++.. ..+-.+++.++++|.. . ..++=...+++.++.+-++...-..|+..|.+ ++...+...|.+++...
T Consensus 87 h~c~~~l~~-~e~kmal~el~q~y~e-n-~n~~l~~lWer~ve~dfnDvv~~ReLa~~yEk-ik~sk~a~~f~Ka~yrfI 162 (711)
T COG1747 87 HLCTRVLEY-GESKMALLELLQCYKE-N-GNEQLYSLWERLVEYDFNDVVIGRELADKYEK-IKKSKAAEFFGKALYRFI 162 (711)
T ss_pred HHHHHHHHh-cchHHHHHHHHHHHHh-c-CchhhHHHHHHHHHhcchhHHHHHHHHHHHHH-hchhhHHHHHHHHHHHhc
Confidence 344455543 4456788888888888 6 55667778888888888887777788877766 78888888888886542
Q ss_pred CC--c---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH
Q 045024 123 PR--A---FWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYP-TSPH-LWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIF 195 (1173)
Q Consensus 123 p~--~---~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p-~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 195 (1173)
|. + .+.|..+-. +--.+.+.-+....+.-.... .... ++..+-.-|....++++|++.+.-.++.+..+..
T Consensus 163 ~~~q~~~i~evWeKL~~--~i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN~~eai~Ilk~il~~d~k~~~ 240 (711)
T COG1747 163 PRRQNAAIKEVWEKLPE--LIGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENENWTEAIRILKHILEHDEKDVW 240 (711)
T ss_pred chhhhhhHHHHHHHHHH--hccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccccCHHHHHHHHHHHhhhcchhhh
Confidence 21 1 122322211 112344444444444333222 1122 2222234455678899999999999988888877
Q ss_pred HHHHHHHHHHH--------------------cCChHHHHHHHHHHHhhcCCC
Q 045024 196 PLLESGNIFLM--------------------LGNFRKGVEQFQLALKISSEN 227 (1173)
Q Consensus 196 a~~~la~~~~~--------------------~g~~~~A~~~~~~al~~~p~~ 227 (1173)
+.-.+...+.. -.++.+++..|++.+-.+..|
T Consensus 241 ar~~~i~~lRd~y~~~~~~e~yl~~s~i~~~~rnf~~~l~dFek~m~f~eGn 292 (711)
T COG1747 241 ARKEIIENLRDKYRGHSQLEEYLKISNISQSGRNFFEALNDFEKLMHFDEGN 292 (711)
T ss_pred HHHHHHHHHHHHhccchhHHHHHHhcchhhccccHHHHHHHHHHHheeccCc
Confidence 77666655544 345566666666666655554
|
|
| >KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=85.43 E-value=37 Score=39.08 Aligned_cols=163 Identities=12% Similarity=0.151 Sum_probs=117.5
Q ss_pred cCCH-HHHHHHHHHHHhhCCCCHHHHHHHHHHH------------HHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q 045024 71 SIDT-QRAIKCYQRAVSLSPDDSVSGEALCELL------------EHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQL 137 (1173)
Q Consensus 71 ~g~~-~eA~~~~~~al~~~p~~~~a~~~La~~~------------~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~ 137 (1173)
.|.+ +++++.=.+.+..+|+...+|...-.++ .++.-.++-+.+...+++.+|+...+|+.+..++.
T Consensus 41 ~~~yd~e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npksY~aW~hR~w~L~ 120 (421)
T KOG0529|consen 41 AKEYDEEHLELTSELLEKNPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKSYGAWHHRKWVLQ 120 (421)
T ss_pred ccccchHHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchhHHHHHHHHHHHH
Confidence 3444 3466666666777777665544332222 12224677888999999999999999999999998
Q ss_pred HcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC----CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH-----
Q 045024 138 HHK--KWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLG----MFSAAIKSYGRAIELDDTSIFPLLESGNIFLM----- 206 (1173)
Q Consensus 138 ~~g--~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g----~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~----- 206 (1173)
+.+ ++..-++..+++++.+|.+..+|...-.+..... ...+=++..++++..++.+..+|.....++..
T Consensus 121 ~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El~ftt~~I~~nfSNYsaWhyRs~lL~~l~~~~ 200 (421)
T KOG0529|consen 121 KNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEELEFTTKLINDNFSNYSAWHYRSLLLSTLHPKE 200 (421)
T ss_pred hCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHHHHHHHHHhccchhhhHHHHHHHHHHHhcccc
Confidence 766 4688899999999999999888876655554432 34566788889999999999999887777652
Q ss_pred -cCC------hHHHHHHHHHHHhhcCCCHHHHHH
Q 045024 207 -LGN------FRKGVEQFQLALKISSENVSAHYG 233 (1173)
Q Consensus 207 -~g~------~~~A~~~~~~al~~~p~~~~a~~~ 233 (1173)
.|+ ...-++.-..++-.+|++..+|+.
T Consensus 201 ~~g~~~~~~~l~sEle~v~saiFTdp~DqS~WfY 234 (421)
T KOG0529|consen 201 ADGNFMPKELLQSELEMVHSAIFTDPEDQSCWFY 234 (421)
T ss_pred ccCccCCHHHHHHHHHHHHHHHhcCccccceeee
Confidence 342 234455666777789999888765
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=84.30 E-value=35 Score=40.68 Aligned_cols=154 Identities=14% Similarity=0.114 Sum_probs=82.3
Q ss_pred HcCCHHHHHHHHHHHHhhCCCChhHHHHhHHHHHHhcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCCChHHHHH
Q 045024 430 EVGEKKLARQAFDSARSIDPSLALPWAGMSADVQASESLVDDAFESCLRAVQILPLAEFQIGLAKLAKLSGHLSSSQVFG 509 (1173)
Q Consensus 430 ~~g~~e~A~~~f~~al~~~P~~~~a~~~l~a~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~la~l~~~~g~~~~~~A~~ 509 (1173)
-.|+++++.+.... -++-|.-+..+....+..+.+.|-++.|+.. ..+++..+.++ ...|+
T Consensus 273 ~~~d~~~v~~~i~~-~~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~-------~~D~~~rFeLA---l~lg~-------- 333 (443)
T PF04053_consen 273 LRGDFEEVLRMIAA-SNLLPNIPKDQGQSIARFLEKKGYPELALQF-------VTDPDHRFELA---LQLGN-------- 333 (443)
T ss_dssp HTT-HHH-----HH-HHTGGG--HHHHHHHHHHHHHTT-HHHHHHH-------SS-HHHHHHHH---HHCT---------
T ss_pred HcCChhhhhhhhhh-hhhcccCChhHHHHHHHHHHHCCCHHHHHhh-------cCChHHHhHHH---HhcCC--------
Confidence 35566665555531 2233444444444345455566666666553 22223333222 12222
Q ss_pred HHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHH
Q 045024 510 AIQQAIQR--GPHYPESHNLYGLVCEARSDYQAAVVSYRLARYAISSSSGTVPNSHFQDISINLARSLSRAGNALDAVRE 587 (1173)
Q Consensus 510 ~l~~al~~--~P~~~~a~~~lg~i~~~~g~~~~A~~~~~kAl~l~~~~pe~~~~~~~~~~~~~La~~~~~~g~~~eAi~~ 587 (1173)
++.+++. ..+++.-|..+|......|+++-|++.|+++- -+..|.-+|...|+.+.=.+.
T Consensus 334 -L~~A~~~a~~~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~-----------------d~~~L~lLy~~~g~~~~L~kl 395 (443)
T PF04053_consen 334 -LDIALEIAKELDDPEKWKQLGDEALRQGNIELAEECYQKAK-----------------DFSGLLLLYSSTGDREKLSKL 395 (443)
T ss_dssp -HHHHHHHCCCCSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT------------------HHHHHHHHHHCT-HHHHHHH
T ss_pred -HHHHHHHHHhcCcHHHHHHHHHHHHHcCCHHHHHHHHHhhc-----------------CccccHHHHHHhCCHHHHHHH
Confidence 2223332 23578899999999999999999999999772 256677888899997555555
Q ss_pred HHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 045024 588 CESLERQGMLDAEVLQVYAFSLWQLGKYDLALSMARNL 625 (1173)
Q Consensus 588 ~~~~~~~~p~~~~~~~~la~a~~~~g~~~eA~~~~~~a 625 (1173)
.+.+...+-.+. + -.+++.+|+.++.++.+.+.
T Consensus 396 ~~~a~~~~~~n~-a----f~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 396 AKIAEERGDINI-A----FQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp HHHHHHTT-HHH-H----HHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHHccCHHH-H----HHHHHHcCCHHHHHHHHHHc
Confidence 544433332221 1 24566778888888777654
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=84.21 E-value=2 Score=46.66 Aligned_cols=87 Identities=5% Similarity=-0.117 Sum_probs=53.9
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHH-HHHHHHHCCCHHHHHHHHHHHHhhC
Q 045024 44 EHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEA-LCELLEHGGKESLEVVVCREASDKS 122 (1173)
Q Consensus 44 ~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~-La~~~~~~g~~~~A~~~~~~al~~~ 122 (1173)
-.|.++....|+++..|...+..-.. .|.+.+--..|.++++.+|.+.+.|.. -+.-+...++++.+...|.+.++.+
T Consensus 94 f~~~R~tnkff~D~k~w~~y~~Y~~k-~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N 172 (435)
T COG5191 94 FELYRSTNKFFNDPKIWSQYAAYVIK-KKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMN 172 (435)
T ss_pred EeeehhhhcCCCCcHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccC
Confidence 34445555566666666666666666 666666666666666666666666555 3344455666666666666666666
Q ss_pred CCcHHHHHH
Q 045024 123 PRAFWAFRR 131 (1173)
Q Consensus 123 p~~~~a~~~ 131 (1173)
|++|..|..
T Consensus 173 ~~~p~iw~e 181 (435)
T COG5191 173 SRSPRIWIE 181 (435)
T ss_pred CCCchHHHH
Confidence 666655543
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=84.16 E-value=28 Score=41.55 Aligned_cols=27 Identities=30% Similarity=0.521 Sum_probs=13.4
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 045024 159 SPHLWEALGLAYHRLGMFSAAIKSYGR 185 (1173)
Q Consensus 159 ~~~~~~~la~~~~~~g~~~~A~~~~~~ 185 (1173)
++..|..||.....+|+++-|.++|++
T Consensus 346 ~~~~W~~Lg~~AL~~g~~~lAe~c~~k 372 (443)
T PF04053_consen 346 DPEKWKQLGDEALRQGNIELAEECYQK 372 (443)
T ss_dssp THHHHHHHHHHHHHTTBHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 344455555555555555555554444
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG2422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=83.86 E-value=1.1e+02 Score=36.93 Aligned_cols=109 Identities=14% Similarity=0.052 Sum_probs=81.7
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcC--C----C---------CCCCCchHHHHHHHHHHHHhcCCH
Q 045024 517 RGPHYPESHNLYGLVCEARSDYQAAVVSYRLARYAISSS--S----G---------TVPNSHFQDISINLARSLSRAGNA 581 (1173)
Q Consensus 517 ~~P~~~~a~~~lg~i~~~~g~~~~A~~~~~kAl~l~~~~--p----e---------~~~~~~~~~~~~~La~~~~~~g~~ 581 (1173)
..|-....+..++.+...+|+.+.|....++++=.++.. | . .+++..+..+.+..-..+.+.|-+
T Consensus 279 ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~ 358 (665)
T KOG2422|consen 279 SSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRLPYIYPENRQFYLALFRYMQSLAQRGCW 358 (665)
T ss_pred cCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccCcccchhhHHHHHHHHHHHHHHHhcCCh
Confidence 357788899999999999999999999888887544432 1 1 112444555666666777888999
Q ss_pred HHHHHHHHHHHHcCCC-CHHHHHHHHHHHH-HcCChHHHHHHHHHH
Q 045024 582 LDAVRECESLERQGML-DAEVLQVYAFSLW-QLGKYDLALSMARNL 625 (1173)
Q Consensus 582 ~eAi~~~~~~~~~~p~-~~~~~~~la~a~~-~~g~~~eA~~~~~~a 625 (1173)
..|.+.++-+++.+|. ||-+...+..+|. +..+|.==++.++..
T Consensus 359 rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~ 404 (665)
T KOG2422|consen 359 RTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEP 404 (665)
T ss_pred HHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 9999999999999998 8877766666665 566777667766655
|
|
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=83.48 E-value=1e+02 Score=36.46 Aligned_cols=177 Identities=16% Similarity=0.156 Sum_probs=116.5
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhC-
Q 045024 10 QLEDSLEANPDDPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLS- 88 (1173)
Q Consensus 10 ~l~~al~~~P~~~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~- 88 (1173)
.+.+++.. .++-.+++.++.+|.+.++ ++-...+++.++.+-++...-..++..|.. ++-..+..+|.+++...
T Consensus 88 ~c~~~l~~-~e~kmal~el~q~y~en~n--~~l~~lWer~ve~dfnDvv~~ReLa~~yEk--ik~sk~a~~f~Ka~yrfI 162 (711)
T COG1747 88 LCTRVLEY-GESKMALLELLQCYKENGN--EQLYSLWERLVEYDFNDVVIGRELADKYEK--IKKSKAAEFFGKALYRFI 162 (711)
T ss_pred HHHHHHHh-cchHHHHHHHHHHHHhcCc--hhhHHHHHHHHHhcchhHHHHHHHHHHHHH--hchhhHHHHHHHHHHHhc
Confidence 45555553 4556788999999988744 888899999999999999888899988877 88899999999998643
Q ss_pred CC--CH---HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCC-cH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 045024 89 PD--DS---VSGEALCELLEHGGKESLEVVVCREASDKSPR-AF-WAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPH 161 (1173)
Q Consensus 89 p~--~~---~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~-~~-~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~ 161 (1173)
|. +. ++|..+-. .--.+.+.-+....++-..... .. .++..+-.-|....++++|++.+...++.+..+..
T Consensus 163 ~~~q~~~i~evWeKL~~--~i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN~~eai~Ilk~il~~d~k~~~ 240 (711)
T COG1747 163 PRRQNAAIKEVWEKLPE--LIGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENENWTEAIRILKHILEHDEKDVW 240 (711)
T ss_pred chhhhhhHHHHHHHHHH--hccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccccCHHHHHHHHHHHhhhcchhhh
Confidence 31 11 12322221 1123444444444444333222 11 22333334556678999999999999999888877
Q ss_pred HHHHHHHHHHH--------------------cCCHHHHHHHHHHHHHhCCCC
Q 045024 162 LWEALGLAYHR--------------------LGMFSAAIKSYGRAIELDDTS 193 (1173)
Q Consensus 162 ~~~~la~~~~~--------------------~g~~~~A~~~~~~al~~~p~~ 193 (1173)
+.-.+...+.. -.++-.++..|++.+-.+.++
T Consensus 241 ar~~~i~~lRd~y~~~~~~e~yl~~s~i~~~~rnf~~~l~dFek~m~f~eGn 292 (711)
T COG1747 241 ARKEIIENLRDKYRGHSQLEEYLKISNISQSGRNFFEALNDFEKLMHFDEGN 292 (711)
T ss_pred HHHHHHHHHHHHhccchhHHHHHHhcchhhccccHHHHHHHHHHHheeccCc
Confidence 77666655544 345666666666666655544
|
|
| >COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=83.35 E-value=2 Score=46.67 Aligned_cols=77 Identities=8% Similarity=0.125 Sum_probs=35.6
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHH
Q 045024 122 SPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEA-LGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLL 198 (1173)
Q Consensus 122 ~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~-la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~ 198 (1173)
.|+++..|...+..-...|-+.+--..|.++++.+|.+++.|.. .+.-+...++++.+...|.+++.++|+++..|.
T Consensus 103 ff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~ 180 (435)
T COG5191 103 FFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWI 180 (435)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHH
Confidence 34444444444444444444444444444455555554444443 233334444555555555555555555444443
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=82.62 E-value=69 Score=38.77 Aligned_cols=217 Identities=14% Similarity=0.042 Sum_probs=105.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhh--------------CCCChhHHHHhHHHHHHhcCCHHHHHHHHHHHHhcCCch
Q 045024 421 WAHIGKLYGEVGEKKLARQAFDSARSI--------------DPSLALPWAGMSADVQASESLVDDAFESCLRAVQILPLA 486 (1173)
Q Consensus 421 ~~~Lg~~y~~~g~~e~A~~~f~~al~~--------------~P~~~~a~~~l~a~~~~~~g~~~eA~~~~~~al~~~p~~ 486 (1173)
|-.|+.-....=+++-|.+.|.+...+ ....|... +++..+.-.|++.||..+|.+.-..+..-
T Consensus 588 W~~LA~~ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~i--LlA~~~Ay~gKF~EAAklFk~~G~enRAl 665 (1081)
T KOG1538|consen 588 WRELAMEALEALDFETARKAYIRVRDLRYLELISELEERKKRGETPNDL--LLADVFAYQGKFHEAAKLFKRSGHENRAL 665 (1081)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHH--HHHHHHHhhhhHHHHHHHHHHcCchhhHH
Confidence 566666666666777777777665431 11112222 23556666888888888887543332222
Q ss_pred HHHHHHHHH-----HHHhCCCChHHHHHHHHHH--HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH------HHHHHhh
Q 045024 487 EFQIGLAKL-----AKLSGHLSSSQVFGAIQQA--IQRGPHYPESHNLYGLVCEARSDYQAAVVSYR------LARYAIS 553 (1173)
Q Consensus 487 ~~~~~la~l-----~~~~g~~~~~~A~~~l~~a--l~~~P~~~~a~~~lg~i~~~~g~~~~A~~~~~------kAl~l~~ 553 (1173)
+.+..+-.+ ....|. .++-....++- -..+-+.|.+ -+.++...|+.++|+.+.- -++++..
T Consensus 666 EmyTDlRMFD~aQE~~~~g~--~~eKKmL~RKRA~WAr~~kePka---AAEmLiSaGe~~KAi~i~~d~gW~d~lidI~r 740 (1081)
T KOG1538|consen 666 EMYTDLRMFDYAQEFLGSGD--PKEKKMLIRKRADWARNIKEPKA---AAEMLISAGEHVKAIEICGDHGWVDMLIDIAR 740 (1081)
T ss_pred HHHHHHHHHHHHHHHhhcCC--hHHHHHHHHHHHHHhhhcCCcHH---HHHHhhcccchhhhhhhhhcccHHHHHHHHHh
Confidence 223222222 222232 22222222221 1122233332 4566677777777766432 1111111
Q ss_pred cCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHhhhccccc
Q 045024 554 SSSGTVPNSHFQDISINLARSLSRAGNALDAVRECESLERQGMLDAEVLQVYAFSLWQLGKYDLALSMARNLASSVSAME 633 (1173)
Q Consensus 554 ~~pe~~~~~~~~~~~~~La~~~~~~g~~~eAi~~~~~~~~~~p~~~~~~~~la~a~~~~g~~~eA~~~~~~aL~~~p~~~ 633 (1173)
.. ...-...+..++..+.+...+.-|-+.|.++- | .-.+...+...+++++|....++.=+..
T Consensus 741 kl-----d~~ere~l~~~a~ylk~l~~~gLAaeIF~k~g-----D---~ksiVqlHve~~~W~eAFalAe~hPe~~---- 803 (1081)
T KOG1538|consen 741 KL-----DKAEREPLLLCATYLKKLDSPGLAAEIFLKMG-----D---LKSLVQLHVETQRWDEAFALAEKHPEFK---- 803 (1081)
T ss_pred hc-----chhhhhHHHHHHHHHhhccccchHHHHHHHhc-----c---HHHHhhheeecccchHhHhhhhhCcccc----
Confidence 10 00011234445555555566666666666552 1 1223455667778888877666543322
Q ss_pred cchhhhhHHHHHHHHHHhcChhhhhHHhhhCC
Q 045024 634 QSSAAASVSFICRLLYHISGLDSTINSILKMP 665 (1173)
Q Consensus 634 ~~~~~~~~~~la~l~~~~g~~~~A~~~l~~~p 665 (1173)
++++.-.|+-+......++|.+...+..
T Consensus 804 ----~dVy~pyaqwLAE~DrFeEAqkAfhkAG 831 (1081)
T KOG1538|consen 804 ----DDVYMPYAQWLAENDRFEEAQKAFHKAG 831 (1081)
T ss_pred ----ccccchHHHHhhhhhhHHHHHHHHHHhc
Confidence 2555555666666666666665444443
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=82.53 E-value=9.1 Score=42.20 Aligned_cols=64 Identities=20% Similarity=0.167 Sum_probs=60.2
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHhh
Q 045024 564 FQDISINLARSLSRAGNALDAVRECESLERQGMLDAEVLQVYAFSLWQLGKYDLALSMARNLAS 627 (1173)
Q Consensus 564 ~~~~~~~La~~~~~~g~~~eAi~~~~~~~~~~p~~~~~~~~la~a~~~~g~~~eA~~~~~~aL~ 627 (1173)
+..++..++..+...|+++.+++.+++++..+|.+...+..+-.+|.+.|+...|+..|+++-+
T Consensus 152 ~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 152 FIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 3457889999999999999999999999999999999999999999999999999999999866
|
|
| >COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=82.30 E-value=82 Score=34.42 Aligned_cols=103 Identities=13% Similarity=-0.017 Sum_probs=69.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCC--CHHHHHHH
Q 045024 163 WEALGLAYHRLGMFSAAIKSYGRAIEL------DDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSE--NVSAHYGL 234 (1173)
Q Consensus 163 ~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~a~~~l 234 (1173)
-..++.++++.|+|.+|+......+.- .+.-...+..-..+|....+..++...+..+-..... .|+ ...
T Consensus 128 e~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPp--qlq 205 (421)
T COG5159 128 ECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPP--QLQ 205 (421)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCH--HHH
Confidence 345678889999999999887766532 2344667777888899988888888777766443211 111 123
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHH
Q 045024 235 ASGLLGLAKQCINLGAFRWGASLLEDACKVAEA 267 (1173)
Q Consensus 235 a~~~~~l~~~~~a~g~~~~A~~~l~~Al~~~~~ 267 (1173)
|.+-...|-......+|..|..+|-+|.+-+..
T Consensus 206 a~lDL~sGIlhcdd~dyktA~SYF~Ea~Egft~ 238 (421)
T COG5159 206 AQLDLLSGILHCDDRDYKTASSYFIEALEGFTL 238 (421)
T ss_pred HHHHHhccceeeccccchhHHHHHHHHHhcccc
Confidence 444444555555667788888888888876543
|
|
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=82.21 E-value=1.1e+02 Score=35.80 Aligned_cols=122 Identities=12% Similarity=0.044 Sum_probs=64.7
Q ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 045024 71 SIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQ 150 (1173)
Q Consensus 71 ~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~ 150 (1173)
.||...|-.-...++...|.++......+.+....|+|+.+...+..+-..-..-..+...+-.....+|++++|...-.
T Consensus 302 ~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~ 381 (831)
T PRK15180 302 DGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALSTAE 381 (831)
T ss_pred ccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHHHH
Confidence 45555555555556666666655555555666666666666555544433322222333344444555566666665555
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 045024 151 HAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDT 192 (1173)
Q Consensus 151 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 192 (1173)
-++...-.+++....-+.....+|-++++...+++.+.++|.
T Consensus 382 ~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~ 423 (831)
T PRK15180 382 MMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPE 423 (831)
T ss_pred HHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCCh
Confidence 555444444444444444444455556666666666555554
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=81.54 E-value=80 Score=38.23 Aligned_cols=211 Identities=10% Similarity=0.047 Sum_probs=117.7
Q ss_pred HHHHHHHHHHccCcHHHHHHHHHHHHH--------------hCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHH------
Q 045024 25 HLDLGLHLWENSESKEKAAEHFVIAAK--------------LNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRA------ 84 (1173)
Q Consensus 25 ~~~lg~~~~~~~~~~~~A~~~~~~al~--------------~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~a------ 84 (1173)
|-.++...++.-+ ++-|.+.|.++-. .....|.. ..++..+.- .|++.+|.+.|.+.
T Consensus 588 W~~LA~~ALeAL~-f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~-iLlA~~~Ay-~gKF~EAAklFk~~G~enRA 664 (1081)
T KOG1538|consen 588 WRELAMEALEALD-FETARKAYIRVRDLRYLELISELEERKKRGETPND-LLLADVFAY-QGKFHEAAKLFKRSGHENRA 664 (1081)
T ss_pred HHHHHHHHHhhhh-hHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchH-HHHHHHHHh-hhhHHHHHHHHHHcCchhhH
Confidence 4445554444444 6666666655421 11222222 356677777 78999998888753
Q ss_pred HhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHcCCHHHHHHHH----------HHH
Q 045024 85 VSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDK--SPRAFWAFRRLGYLQLHHKKWSEAVQSL----------QHA 152 (1173)
Q Consensus 85 l~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~la~~~~~~g~~~~A~~~l----------~~a 152 (1173)
+++..+ .-.+.++.-++..|..++-....++-.+- +-+.|. ..+..+...|+.++|+... +-+
T Consensus 665 lEmyTD--lRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~kePk---aAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~ 739 (1081)
T KOG1538|consen 665 LEMYTD--LRMFDYAQEFLGSGDPKEKKMLIRKRADWARNIKEPK---AAAEMLISAGEHVKAIEICGDHGWVDMLIDIA 739 (1081)
T ss_pred HHHHHH--HHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcCCcH---HHHHHhhcccchhhhhhhhhcccHHHHHHHHH
Confidence 222211 12455666666667666655555443221 111222 2456677788888877643 222
Q ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCHHHHH
Q 045024 153 IRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHY 232 (1173)
Q Consensus 153 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~ 232 (1173)
-+++..+.+.+..++..+.+...+.-|.+.|.+.-. .-.+.+++...+++++|...-++.-+.-| ..++
T Consensus 740 rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD--------~ksiVqlHve~~~W~eAFalAe~hPe~~~---dVy~ 808 (1081)
T KOG1538|consen 740 RKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGD--------LKSLVQLHVETQRWDEAFALAEKHPEFKD---DVYM 808 (1081)
T ss_pred hhcchhhhhHHHHHHHHHhhccccchHHHHHHHhcc--------HHHHhhheeecccchHhHhhhhhCccccc---cccc
Confidence 334445566666777777777777778877776522 12355667788899998877666433322 2444
Q ss_pred HHHHHHHHHHHHHHHhhcHHHHHHHHHHH
Q 045024 233 GLASGLLGLAKQCINLGAFRWGASLLEDA 261 (1173)
Q Consensus 233 ~la~~~~~l~~~~~a~g~~~~A~~~l~~A 261 (1173)
-.|+.+.+..+ |++|.+.|.+|
T Consensus 809 pyaqwLAE~Dr-------FeEAqkAfhkA 830 (1081)
T KOG1538|consen 809 PYAQWLAENDR-------FEEAQKAFHKA 830 (1081)
T ss_pred hHHHHhhhhhh-------HHHHHHHHHHh
Confidence 44554444444 55555544443
|
|
| >PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ] | Back alignment and domain information |
|---|
Probab=81.40 E-value=85 Score=34.03 Aligned_cols=62 Identities=8% Similarity=-0.020 Sum_probs=38.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHH-cCChHHHHHHHHHHHhhc
Q 045024 163 WEALGLAYHRLGMFSAAIKSYGRAIELDDT-SIFPLLESGNIFLM-LGNFRKGVEQFQLALKIS 224 (1173)
Q Consensus 163 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~la~~~~~-~g~~~~A~~~~~~al~~~ 224 (1173)
+..++.+..+.|+|++.+..+.+++..+|. +.+-...+..+|-. .|....+...+.......
T Consensus 4 li~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~ 67 (236)
T PF00244_consen 4 LIYLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQKE 67 (236)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhhh
Confidence 456788888888888888888888888665 34444555555532 355555555555554433
|
There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A .... |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 1173 | ||||
| 3kd7_A | 125 | Designed Tpr Module (Ctpr390) In Complex With Its P | 1e-08 | ||
| 2fo7_A | 136 | Crystal Structure Of An 8 Repeat Consensus Tpr Supe | 6e-08 | ||
| 1na0_A | 125 | Design Of Stable Alpha-Helical Arrays From An Ideal | 1e-07 | ||
| 2wqh_A | 125 | Crystal Structure Of Ctpr3y3 Length = 125 | 2e-07 | ||
| 1w3b_A | 388 | The Superhelical Tpr Domain Of O-Linked Glcnac Tran | 1e-05 | ||
| 2avp_A | 70 | Crystal Structure Of An 8 Repeat Consensus Tpr Supe | 8e-05 | ||
| 1na3_A | 91 | Design Of Stable Alpha-Helical Arrays From An Ideal | 9e-05 |
| >pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its Peptide-Ligand (Hsp90 Peptide) Length = 125 | Back alignment and structure |
|
| >pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix (Trigonal Crystal Form) Length = 136 | Back alignment and structure |
|
| >pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized Tpr Motif Length = 125 | Back alignment and structure |
|
| >pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3 Length = 125 | Back alignment and structure |
|
| >pdb|1W3B|A Chain A, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase Reveals Structural Similarities To Importin Alpha. Length = 388 | Back alignment and structure |
|
| >pdb|2AVP|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix Length = 70 | Back alignment and structure |
|
| >pdb|1NA3|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized Tpr Motif Length = 91 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 112 bits (282), Expect = 2e-26
Identities = 50/231 (21%), Positives = 83/231 (35%), Gaps = 10/231 (4%)
Query: 15 LEANPDDPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDT 74
+E P+ +LG E A HF A L+P A+ LG+
Sbjct: 162 IETQPNFAVAWSNLGCVFNAQGEIWL-AIHHFEKAVTLDPNFLDAYINLGNVLKEAR-IF 219
Query: 75 QRAIKCYQRAVSLSPDDSVS----GEALCELLEHGGKESLEVVVCREASDKSPRAFWAFR 130
RA+ Y RA+SLSP+ +V E G L + R A + P A+
Sbjct: 220 DRAVAAYLRALSLSPNHAVVHGNLACVYYEQ----GLIDLAIDTYRRAIELQPHFPDAYC 275
Query: 131 RLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELD 190
L +EA A+R PT L G A++ Y +A+E+
Sbjct: 276 NLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVF 335
Query: 191 DTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLASGLLGL 241
++ G ++ + ++ A++IS A+ + + L +
Sbjct: 336 PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEM 386
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 112 bits (282), Expect = 2e-26
Identities = 55/236 (23%), Positives = 82/236 (34%), Gaps = 10/236 (4%)
Query: 12 EDSLEANPDDPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFS 71
PD+ + L L + +++A +A K NP A A+ LG+ Y
Sbjct: 23 MQLWRQEPDNTGVLLLLSS-IHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERG 81
Query: 72 IDTQRAIKCYQRAVSLSPDDSVS----GEALCELLEHGGKESLEVVVCREASDKSPRAFW 127
Q AI+ Y+ A+ L PD AL G V A +P +
Sbjct: 82 -QLQEAIEHYRHALRLKPDFIDGYINLAAALVAA----GDMEGAVQAYVSALQYNPDLYC 136
Query: 128 AFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAI 187
LG L + EA AI P W LG ++ G AI + +A+
Sbjct: 137 VRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAV 196
Query: 188 ELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLASGLLGLAK 243
LD + + GN+ F + V + AL +S + H LA
Sbjct: 197 TLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGL 252
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 108 bits (273), Expect = 2e-25
Identities = 60/234 (25%), Positives = 89/234 (38%), Gaps = 10/234 (4%)
Query: 14 SLEANPDDPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSID 73
+L+ NPD + DLG L +E A ++ A + P AVA+ LG + +
Sbjct: 127 ALQYNPDLYCVRSDLGNLLKALGRLEE-AKACYLKAIETQPNFAVAWSNLGCVFNAQG-E 184
Query: 74 TQRAIKCYQRAVSLSPDDSVS----GEALCELLEHGGKESLEVVVCREASDKSPRAFWAF 129
AI +++AV+L P+ + G L E V A SP
Sbjct: 185 IWLAIHHFEKAVTLDPNFLDAYINLGNVLKEA----RIFDRAVAAYLRALSLSPNHAVVH 240
Query: 130 RRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIEL 189
L + A+ + + AI P P + L A G + A Y A+ L
Sbjct: 241 GNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRL 300
Query: 190 DDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLASGLLGLAK 243
T L NI GN + V ++ AL++ E +AH LAS L K
Sbjct: 301 CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGK 354
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 103 bits (258), Expect = 2e-23
Identities = 76/430 (17%), Positives = 143/430 (33%), Gaps = 66/430 (15%)
Query: 26 LDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAV 85
++L ++ + + A H + + P N L + + R+ A+
Sbjct: 3 MELAHREYQAGDFEA-AERHCMQLWRQEPDNTGVLLLLSSIHFQCR-RLDRSAHFSTLAI 60
Query: 86 SLSPDDSVS----GEALCELLEHGGK--ESLEVVVCREASDKSPRAFWAFRRLGYLQLHH 139
+P + + G E G+ E++E R A P + L +
Sbjct: 61 KQNPLLAEAYSNLGNVYKER----GQLQEAIE--HYRHALRLKPDFIDGYINLAAALVAA 114
Query: 140 KKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLE 199
AVQ+ A++ P + LG LG A Y +AIE
Sbjct: 115 GDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSN 174
Query: 200 SGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLASGLLGLAKQCINLGAFRWGASLLE 259
G +F G + F+ A+ + + A+ L + L +
Sbjct: 175 LGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARI--------------FD 220
Query: 260 DAC----KVAEANTRLA---GNMSCIWKLHGDIQLTYAKCFPWAEE--RQSLEFDVETFS 310
A + + A GN++C++ G I L A + R+++E
Sbjct: 221 RAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDL--------AIDTYRRAIELQPHFPD 272
Query: 311 A----SIVSWKTTCLMAAISSKSSYQRALYLAPWQANIYTDIAITSDLIYSLNEAYGHYQ 366
A + + + A Y AL L P A+ ++A E G+ +
Sbjct: 273 AYCNLANALKEKGSVAEAE---DCYNTALRLCPTHADSLNNLANI------KREQ-GNIE 322
Query: 367 SAWHVSEKMALGALLLEGDNCQFWVTLGCLSNYNGLKQHALI---RGLQLDVSLADAWAH 423
A + K AL + + L + G Q AL+ +++ + ADA+++
Sbjct: 323 EAVRLYRK----ALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSN 378
Query: 424 IGKLYGEVGE 433
+G E+ +
Sbjct: 379 MGNTLKEMQD 388
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 97.6 bits (244), Expect = 1e-21
Identities = 70/400 (17%), Positives = 132/400 (33%), Gaps = 58/400 (14%)
Query: 115 CREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLG 174
C + + P L + ++ + AI+ P + LG Y G
Sbjct: 22 CMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERG 81
Query: 175 MFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGL 234
AI+ Y A+ L I + + G+ V+ + AL+ + + L
Sbjct: 82 QLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDL 141
Query: 235 ASGLLGLAKQCINLGAFRWGASLLEDA----CKVAEANTRLAG---NMSCIWKLHGDIQL 287
+ L L + LE+A K E A N+ C++ G+I L
Sbjct: 142 GNLLKALGR--------------LEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWL 187
Query: 288 TYAKCFPWAEE--RQSLEFDVETFSA----SIVSWKTTCLMAAISSKSSYQRALYLAPWQ 341
A +++ D A V + A+ ++Y RAL L+P
Sbjct: 188 --------AIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAV---AAYLRALSLSPNH 236
Query: 342 ANIYTDIAITSDLIYSLNEAYGHYQSAWHVSEKMALGALLLEGDNCQFWVTLGCLSNYNG 401
A ++ ++A ++ A Y+ A+ L+ + L
Sbjct: 237 AVVHGNLACVYYEQGLIDLAIDTYRR-----------AIELQPHFPDAYCNLANA--LKE 283
Query: 402 LKQH--ALI---RGLQLDVSLADAWAHIGKLYGEVGEKKLARQAFDSARSIDPSLALPWA 456
A L+L + AD+ ++ + E G + A + + A + P A +
Sbjct: 284 KGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHS 343
Query: 457 GMSADVQASESLVDDAFESCLRAVQILP-LAEFQIGLAKL 495
+ A V + + +A A++I P A+ +
Sbjct: 344 NL-ASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNT 382
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 89.9 bits (224), Expect = 5e-19
Identities = 41/200 (20%), Positives = 71/200 (35%), Gaps = 10/200 (5%)
Query: 14 SLEANPDDPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSID 73
++ +P+ +++LG L E ++A ++ A L+P +AV L Y
Sbjct: 195 AVTLDPNFLDAYINLGNVLKEARI-FDRAVAAYLRALSLSPNHAVVHGNLACVYYEQG-L 252
Query: 74 TQRAIKCYQRAVSLSPDDSVS----GEALCELLEHGGKESLEVVVCREASDKSPRAFWAF 129
AI Y+RA+ L P + AL E E+ + A P +
Sbjct: 253 IDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSV--AEAEDC--YNTALRLCPTHADSL 308
Query: 130 RRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIEL 189
L ++ EAV+ + A+ +P L + G A+ Y AI +
Sbjct: 309 NNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368
Query: 190 DDTSIFPLLESGNIFLMLGN 209
T GN + +
Sbjct: 369 SPTFADAYSNMGNTLKEMQD 388
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 75.7 bits (187), Expect = 2e-14
Identities = 17/116 (14%), Positives = 44/116 (37%), Gaps = 5/116 (4%)
Query: 133 GYLQL---HHK--KWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAI 187
G ++L ++ + A + R P + + L + + + AI
Sbjct: 1 GPMELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAI 60
Query: 188 ELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLASGLLGLAK 243
+ + GN++ G ++ +E ++ AL++ + + + LA+ L+
Sbjct: 61 KQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGD 116
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 71.8 bits (177), Expect = 3e-13
Identities = 84/438 (19%), Positives = 136/438 (31%), Gaps = 91/438 (20%)
Query: 197 LLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLASGLLGLAKQCINLGAFRWGAS 256
+E + G+F + +N LL A
Sbjct: 2 PMELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLL-----LLSSIHF--QCRRLDRSAH 54
Query: 257 LLEDACKVAEANTRLAGNMSCIWKLHGDIQLTYAKCFPWAEERQSLEFDVETFSASIVSW 316
A K N+ ++K G +Q
Sbjct: 55 FSTLAIKQNPLLAEAYSNLGNVYKERGQLQ------------------------------ 84
Query: 317 KTTCLMAAISSKSSYQRALYLAPWQANIYTDIAITSDLIYSLNEAYGHYQSAWHVSEKMA 376
AI Y+ AL L P + Y ++A + A Y SA
Sbjct: 85 ------EAIEH---YRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSA-------- 127
Query: 377 LGALLLEGDNCQFWVTLGCLSNYNGLKQH-----ALIRGLQLDVSLADAWAHIGKLYGEV 431
L D LG L L + ++ ++ + A AW+++G ++
Sbjct: 128 ---LQYNPDLYCVRSDLGNL--LKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQ 182
Query: 432 GEKKLARQAFDSARSIDPSLALPWAGMSADVQASESLVDDAFESCLRAVQILP-LAEFQI 490
GE LA F+ A ++DP+ + + +V + D A + LRA+ + P A
Sbjct: 183 GEIWLAIHHFEKAVTLDPNFLDAYINL-GNVLKEARIFDRAVAAYLRALSLSPNHAVVHG 241
Query: 491 GLAKLAKLSGHLSSSQVFGAI---QQAIQRGPHYPESHNLYGLVCEARSDYQAAVVSYRL 547
LA + G + AI ++AI+ PH+P+++ + + A Y
Sbjct: 242 NLACVYYEQGLID-----LAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNT 296
Query: 548 ARYAISSSSGTVPNSHFQDISINLARSLSRAGNALDAVRECE-SLERQGMLDAEVLQVY- 605
A + D NLA GN +AVR +LE + E +
Sbjct: 297 A-LRL--------CPTHADSLNNLANIKREQGNIEEAVRLYRKALE----VFPEFAAAHS 343
Query: 606 --AFSLWQLGKYDLALSM 621
A L Q GK AL
Sbjct: 344 NLASVLQQQGKLQEALMH 361
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 71.0 bits (175), Expect = 6e-13
Identities = 63/401 (15%), Positives = 140/401 (34%), Gaps = 52/401 (12%)
Query: 163 WEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALK 222
L ++ G F AA + + + + LL +I + +
Sbjct: 2 PMELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCR-------RLDRSAH 54
Query: 223 ISSENVSAHYGLASGLLGLAKQCINLGAFRWGASLLEDACKVAEANTRLAGNMSCIWKLH 282
S+ + + LA L G L++A + RL + +
Sbjct: 55 FSTLAIKQNPLLAEAYSNLGNVYKERG-------QLQEAIEHYRHALRLKPDFIDGYINL 107
Query: 283 GDIQLTYAKCFPWAEE--RQSLEFDVETFSA----SIVSWKTTCLMAAISSKSSYQRALY 336
L A A + +L+++ + + + L A + Y +A+
Sbjct: 108 AAA-LVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKAC---YLKAIE 163
Query: 337 LAPWQANIYTDIAITSDLIYSLNEAYGHYQSAWHVSEKMALGALLLEGDNCQFWVTLGCL 396
P A ++++ + + A H++ A + L+ + ++ LG +
Sbjct: 164 TQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKA-----------VTLDPNFLDAYINLGNV 212
Query: 397 SNYNGLKQH-----ALIRGLQLDVSLADAWAHIGKLYGEVGEKKLARQAFDSARSIDPSL 451
+ A +R L L + A ++ +Y E G LA + A + P
Sbjct: 213 --LKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHF 270
Query: 452 ALPWAGMSADVQASESLVDDAFESCLRAVQILP-LAEFQIGLAKLAKLSGHLSSSQVFGA 510
+ + A+ + V +A + A+++ P A+ LA + + G++ A
Sbjct: 271 PDAYCNL-ANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIE-----EA 324
Query: 511 I---QQAIQRGPHYPESHNLYGLVCEARSDYQAAVVSYRLA 548
+ ++A++ P + +H+ V + + Q A++ Y+ A
Sbjct: 325 VRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEA 365
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 110 bits (278), Expect = 2e-25
Identities = 57/446 (12%), Positives = 103/446 (23%), Gaps = 62/446 (13%)
Query: 7 LLLQLEDSLEANPDDPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHY 66
LL L + P + E+ ++ A L P+ VA
Sbjct: 91 LLPVLCQAHGLTPQQVVAIASHD-GGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGG 149
Query: 67 YTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAF 126
Q + +A L+P+ V+ + + + V +A +P+
Sbjct: 150 KQALE-TVQALLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQV 208
Query: 127 WAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRA 186
A G + + + L A P + G L + +A
Sbjct: 209 VAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQA 268
Query: 187 IELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLASGLLGLAKQCI 246
L + + + L ++ + A ++ + V A G KQ
Sbjct: 269 HGLTPQQVVAIASNSGGKQALETVQRLLPVLCQAHGLTPQQVVAIASN-----GGGKQ-- 321
Query: 247 NLGAFRWGASLLEDACKVAEANTRLAGNMSCIWKLHGDIQLTYAKCFPWAEERQSLEFDV 306
L + LL C+ + H + +
Sbjct: 322 ALETVQ---RLLPVLCQAHGLTPQQVV----AIASHDGGK-----------------QAL 357
Query: 307 ETFSASIVSWKTTCLMAAISSKSSYQRALYLAPWQANIYTDIAITSDLIYSLNEAYGHYQ 366
ET + +A L P Q + Q
Sbjct: 358 ETVQRLL---------------PVLCQAHGLTPEQVVAIASNGGGKQAL-------ETVQ 395
Query: 367 SAWHVSEKMALGALLLEGDNCQFWVTLGCLSNYNGLKQHALI---RGLQLDVSLADAWAH 423
V + A L + + Q L + L A A
Sbjct: 396 RLLPVLCQ----AHGLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIAS 451
Query: 424 IGKLYGEVGEKKLARQAFDSARSIDP 449
G + D A +
Sbjct: 452 NGGGRPALESIVAQLSRPDPALAALT 477
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 104 bits (260), Expect = 3e-23
Identities = 68/511 (13%), Positives = 109/511 (21%), Gaps = 113/511 (22%)
Query: 49 AAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKE 108
L P+ VA QR + +A L+P V
Sbjct: 64 PLNLTPEQVVAIASHDGGKQALE-TVQRLLPVLCQAHGLTPQQVV--------------- 107
Query: 109 SLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGL 168
A + + + L A P +
Sbjct: 108 -------------------AIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDG 148
Query: 169 AYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENV 228
L A + +A L + + +G L ++ + A ++ + V
Sbjct: 149 GKQALETVQALLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQV 208
Query: 229 SAHYGLASGLLGLAKQCINLGAFRWGASLLEDACKVAEANTRLAGNMSCIWKLHGDIQLT 288
A G KQ L LL C+ + +G +
Sbjct: 209 VAIAS-----NGGGKQ--ALETV---QRLLPVLCQAHGLTPQQVV----AIASNGGGKQ- 253
Query: 289 YAKCFPWAEERQSLEFDVETFSASIVSWKTTCLMAAISSKSSYQRALYLAPWQANIYTDI 348
+ET + +A L P Q
Sbjct: 254 ----------------ALETVQRLL---------------PVLCQAHGLTPQQVVAI--- 279
Query: 349 AITSDLIYSLNEAY---GHYQSAWHVSEKMALGALLLEGDNCQFWVTLGCLSNYNGLKQH 405
S + Q V + A L + G Q
Sbjct: 280 -------ASNSGGKQALETVQRLLPVLCQ----AHGLTPQQVVAIASNGGGKQALETVQR 328
Query: 406 AL---IRGLQLDVSLADAWAHIGKLYGEVGEKKLARQAFDSARSIDPSLALPWAGMSADV 462
L + L A A + + A + P + A
Sbjct: 329 LLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASNGGGK 388
Query: 463 QASESLVDDAFESCLRAVQILP-----LAEFQIGLAKLAKLSGHLSSSQVFGAIQQAIQR 517
QA E V +A + P +A G L + L + QA
Sbjct: 389 QALE-TVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQRLLP------VLCQAHGL 441
Query: 518 GPHYPESHNLYGLVCEARSDYQAAVVSYRLA 548
P + G A A + A
Sbjct: 442 TPQQVVAIASNGGGRPALESIVAQLSRPDPA 472
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 100 bits (251), Expect = 4e-22
Identities = 39/255 (15%), Positives = 65/255 (25%), Gaps = 20/255 (7%)
Query: 3 EKGALLLQLEDSLEA----------NPDDPSLHLDLGLHLWENSESKEKAAEHFVIAAKL 52
LE P+ G + E+ ++ A L
Sbjct: 145 SHDGGKQALETVQALLPVLCQAHGLTPEQVVAIASNGG-GKQALETVQRLLPVLCQAHGL 203
Query: 53 NPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVS----GEALCELLEHGGKE 108
PQ VA G QR + +A L+P V+ G L +
Sbjct: 204 TPQQVVAIASNGGGKQALE-TVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETV--QR 260
Query: 109 SLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGL 168
L V +A +P+ A + + + L A P + G
Sbjct: 261 LLPV--LCQAHGLTPQQVVAIASNSGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGG 318
Query: 169 AYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENV 228
L + +A L + + L ++ + A ++ E V
Sbjct: 319 GKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQV 378
Query: 229 SAHYGLASGLLGLAK 243
A G L
Sbjct: 379 VAIASNGGGKQALET 393
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 99.8 bits (249), Expect = 7e-22
Identities = 39/254 (15%), Positives = 66/254 (25%), Gaps = 20/254 (7%)
Query: 4 KGALLLQLEDSLEA----------NPDDPSLHLDLGLHLWENSESKEKAAEHFVIAAKLN 53
G LE P G + E+ ++ A L
Sbjct: 180 NGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGK-QALETVQRLLPVLCQAHGLT 238
Query: 54 PQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVS----GEALCELLEHGGKES 109
PQ VA G + QR + +A L+P V+ L
Sbjct: 239 PQQVVAIASNGGGK-QALETVQRLLPVLCQAHGLTPQQVVAIASNSGGKQAL----ETVQ 293
Query: 110 LEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLA 169
+ V +A +P+ A G + + + L A P +
Sbjct: 294 RLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGG 353
Query: 170 YHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVS 229
L + +A L + + +G L ++ + A ++ E V
Sbjct: 354 KQALETVQRLLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPEQVV 413
Query: 230 AHYGLASGLLGLAK 243
A G L
Sbjct: 414 AIASHDGGKQALET 427
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 97.5 bits (243), Expect = 4e-21
Identities = 40/276 (14%), Positives = 70/276 (25%), Gaps = 12/276 (4%)
Query: 3 EKGALLLQLEDSLEA----------NPDDPSLHLDLGLHLWENSESKEKAAEHFVIAAKL 52
G LE P G + E+ ++ A L
Sbjct: 213 SNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGG-GKQALETVQRLLPVLCQAHGL 271
Query: 53 NPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEV 112
PQ VA QR + +A L+P V+ + + +
Sbjct: 272 TPQQVVAIASNSGGKQALE-TVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLL 330
Query: 113 VVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHR 172
V +A +P+ A + + + L A P + G
Sbjct: 331 PVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASNGGGKQA 390
Query: 173 LGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHY 232
L + +A L + + L ++ + A ++ + V A
Sbjct: 391 LETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIA 450
Query: 233 GLASGLLGLAKQCINLGAFRWGASLLEDACKVAEAN 268
G L L + L + VA A
Sbjct: 451 SNGGGRPALESIVAQLSRPDPALAALTNDHLVALAC 486
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 78.3 bits (193), Expect = 6e-15
Identities = 66/515 (12%), Positives = 115/515 (22%), Gaps = 85/515 (16%)
Query: 138 HHKKWS-----EAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSY-----GRAI 187
HH +WS EA+ ++ +RG P + L +A A+ ++ G +
Sbjct: 6 HHHQWSGARALEALLTVAGELRGPPLQLDTGQLLKIAKRGGVTAVEAVHAWRNALTGAPL 65
Query: 188 ELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLASGLLGLAKQCIN 247
L + + L ++ + A ++ + V A G L
Sbjct: 66 NLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALET---- 121
Query: 248 LGAFRWGASLLEDACKVAEANTRLAGNMSCIWKLHGDIQLTYAKCFPWAEE--RQSLEFD 305
++ V L H + Q+
Sbjct: 122 ----------VQRLLPVLCQAHGLTPEQVVAIASHDGG-KQALETVQALLPVLCQAHGLT 170
Query: 306 VETFSA----SIVSWKTTCLMAAISSKSSYQRALYLAPWQANIYTDIAITSDLIYSLNEA 361
E A + + +A L P Q S
Sbjct: 171 PEQVVAIASNGGGKQALETVQRLL---PVLCQAHGLTPQQVVAI----------ASNGGG 217
Query: 362 Y---GHYQSAWHVSEKMALGALLLEGDNCQFWVTLGCLSNYNGLKQH-----ALIRGLQL 413
Q V + A L + G L+ L + L
Sbjct: 218 KQALETVQRLLPVLCQ----AHGLTPQQVVAIASNGGG--KQALETVQRLLPVLCQAHGL 271
Query: 414 DVSLADAWAHIGKLYGEVGEKKLARQAFDSARSIDPSLALPWAGMSADVQASESLVDDAF 473
A A + + A + P + A QA E V
Sbjct: 272 TPQQVVAIASNSGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALE-TVQRLL 330
Query: 474 ESCLRAVQILP-----LAEFQIGLAKLAKLSGHLSSSQVFGAIQQAIQRGPHYPESHNLY 528
+A + P +A G L + L + QA P +
Sbjct: 331 PVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPV------LCQAHGLTPEQVVAIASN 384
Query: 529 GLVCEARSDYQAAVVSYRLARYAISSSSGTVPNSHFQDISINLARSLSRAGNALDAVREC 588
G +A Q + A + + + +
Sbjct: 385 GGGKQALETVQRLLPVLCQA-HGL--------TPEQVVAIASHDGGKQALETVQRLL--- 432
Query: 589 ESLERQGMLDAEVLQVY---AFSLWQLGKYDLALS 620
L + L + + L LS
Sbjct: 433 PVLCQAHGLTPQQVVAIASNGGGRPALESIVAQLS 467
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 109 bits (274), Expect = 1e-24
Identities = 37/235 (15%), Positives = 79/235 (33%), Gaps = 17/235 (7%)
Query: 12 EDSLEANPDDPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFS 71
LE +P + ++ L E+ K K +P+ AV + +G YY +
Sbjct: 329 TKILEIDPYNLDVYPLHLASLHES-GEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVN 387
Query: 72 IDTQRAIKCYQRAVSLSPDDSVS----GEALCELLEHGGKESLEVVVCREASDKSPRAFW 127
A + + ++ ++ P + + EH +++ A+
Sbjct: 388 -KISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEH--DQAISA--YTTAARLFQGTHL 442
Query: 128 AFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAI 187
+ LG + A + LQ + + P L LG+ AI + A+
Sbjct: 443 PYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNAL 502
Query: 188 ELDDTSIF--PLLES-----GNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLA 235
L + + G+ + L + ++ L +S+ + + H +A
Sbjct: 503 LLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIA 557
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 97.6 bits (243), Expect = 7e-21
Identities = 43/255 (16%), Positives = 86/255 (33%), Gaps = 31/255 (12%)
Query: 4 KGALLLQLEDSLEA----------NPDDPSLHLDLGLHLWENSESKEKAAEHFVIAAKLN 53
A L + + + +P+ L +G++ ++ +A +F ++ ++
Sbjct: 345 HLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKI-SEARRYFSKSSTMD 403
Query: 54 PQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVS----GEALCELLEHGGKES 109
PQ A+ H + + +AI Y A L + G +L G
Sbjct: 404 PQFGPAWIGFAHSFAIEG-EHDQAISAYTTAARLFQGTHLPYLFLGMQHMQL----GNIL 458
Query: 110 LEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGY-------PTSPHL 162
L + + LG + + A+ Q+A+
Sbjct: 459 LANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAAT 518
Query: 163 WEALGLAYHRLGMFSAAIKSYGRAIEL--DDTSIFPLLESGNIFLMLGNFRKGVEQFQLA 220
W LG AY +L M+ AAI + + + L +D ++ + ++L + +
Sbjct: 519 WANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAI--ALVYLHKKIPGLAITHLHES 576
Query: 221 LKISSENVSAHYGLA 235
L IS + A L
Sbjct: 577 LAISPNEIMASDLLK 591
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 95.3 bits (237), Expect = 4e-20
Identities = 72/557 (12%), Positives = 154/557 (27%), Gaps = 99/557 (17%)
Query: 75 QRAIKCYQRAVSLSPDDSVS---GEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRR 131
+ A ++ + ++ + + + + C ++ + ++ + ++S +
Sbjct: 101 KCAAFVGEKVLDITGNPNDAFWLAQVYCCTGDY--ARAKCLLTKEDLYNRSSACRYL--- 155
Query: 132 LGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDD 191
+ + W A LG A K + +
Sbjct: 156 AAFCLVKLYDWQGA-----------------LNLLGETNPFRKDEKNANKLLMQDGGIKL 198
Query: 192 TSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLASGLLGLAKQCINLGAF 251
+ G ++ L NF + E ++ AL + ++ A L S L A + +L
Sbjct: 199 EA-SMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDL--- 254
Query: 252 RWGASLLEDACKVAEANTRLAGNMSCIWKLHGDIQLTYAKCFPWAEERQSLEFDVETFSA 311
+ + A + ++ L + +
Sbjct: 255 -------VLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDE-------------------- 287
Query: 312 SIVSWKTTCLMAAISSKSSYQRALYLAPWQANIYTDIAITSDLIYSLNEAYGHYQSAWHV 371
+ Y ++ +++ A T + +
Sbjct: 288 -------------LRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKI--- 331
Query: 372 SEKMALGALLLEGDNCQFWVTLGCLSNYNGLKQHALI---RGLQLDVSLADAWAHIGKLY 428
L ++ N + + +G K + + A W +G Y
Sbjct: 332 --------LEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYY 383
Query: 429 GEVGEKKLARQAFDSARSIDPSLALPWAGMSADVQASESLVDDAFESCLRAVQILP---L 485
V + AR+ F + ++DP W G A A E D A + A ++ L
Sbjct: 384 LCVNKISEARRYFSKSSTMDPQFGPAWIGF-AHSFAIEGEHDQAISAYTTAARLFQGTHL 442
Query: 486 AEFQIGLAKLAKLSGHLSSSQVFGAI---QQAIQRGPHYPESHNLYGLVCEARSDYQAAV 542
+G+ H+ + A Q + + P N G+V +SD Q A+
Sbjct: 443 PYLFLGMQ-------HMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAI 495
Query: 543 VSYRLARYAISSSSGTVPNSHFQDISINLARSLSRAGNALDAVRECESLERQGMLDAEVL 602
++ A + + NL + + A+ DA V
Sbjct: 496 NHFQNALLLVKKTQSNEKPWA--ATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVH 553
Query: 603 QVYAFSLWQLGKYDLAL 619
A LA+
Sbjct: 554 TAIALVYLHKKIPGLAI 570
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 94.5 bits (235), Expect = 6e-20
Identities = 35/240 (14%), Positives = 73/240 (30%), Gaps = 10/240 (4%)
Query: 14 SLEANPDDPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSID 73
S+ L L L+ S +++P N + +
Sbjct: 297 SINGLEKSSDLLLCKADTLFVRSR-FIDVLAITTKILEIDPYNLDVYPLHLASLHESG-E 354
Query: 74 TQRAIKCYQRAVSLSPDDSVS----GEALCELLEHGGKESLEVVVCREASDKSPRAFWAF 129
+ V P+ +V+ G + + E+ ++S P+ A+
Sbjct: 355 KNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKI--SEARRY--FSKSSTMDPQFGPAW 410
Query: 130 RRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIEL 189
+ + +A+ + A R + + + LG+ + +LG A + + L
Sbjct: 411 IGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYAL 470
Query: 190 DDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLASGLLGLAKQCINLG 249
L E G + + + + FQ AL + + S A+ L L
Sbjct: 471 FQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLK 530
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 83.0 bits (205), Expect = 2e-16
Identities = 30/222 (13%), Positives = 66/222 (29%), Gaps = 5/222 (2%)
Query: 25 HLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRA 84
L+L + ++ A + + + + ++ + G YT S + RA +CY+ A
Sbjct: 169 ALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCY-LRGQVYTNLS-NFDRAKECYKEA 226
Query: 85 VSLSPDDSVSGEALCELLEHGGKESLEVVV---CREASDKSPRAFWAFRRLGYLQLHHKK 141
+ + + + L E ++V+ S + + L + H+
Sbjct: 227 LMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHED 286
Query: 142 WSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESG 201
+ +I G S L F + + +E+D ++
Sbjct: 287 ELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHL 346
Query: 202 NIFLMLGNFRKGVEQFQLALKISSENVSAHYGLASGLLGLAK 243
G K + E + L + K
Sbjct: 347 ASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNK 388
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 61.8 bits (150), Expect = 1e-09
Identities = 28/167 (16%), Positives = 50/167 (29%), Gaps = 17/167 (10%)
Query: 15 LEANPDDPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDT 74
+L LG+ + A E+ + L + + LG S D
Sbjct: 434 ARLFQGTHLPYLFLGMQHMQLGNILL-ANEYLQSSYALFQYDPLLLNELGVVAFNKS-DM 491
Query: 75 QRAIKCYQRAVSLSPDDSVS-----------GEALCELLEHGGKESLEVVVCREASDKSP 123
Q AI +Q A+ L + G A +L + +++ + S
Sbjct: 492 QTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMY--DAAIDA--LNQGLLLST 547
Query: 124 RAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAY 170
+ + LH K A+ L ++ P + L A
Sbjct: 548 NDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRAL 594
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 59.9 bits (145), Expect = 4e-09
Identities = 64/503 (12%), Positives = 135/503 (26%), Gaps = 88/503 (17%)
Query: 15 LEANPDDPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTR----- 69
L+ + L + A+ + L +++ +
Sbjct: 111 LDITGNPNDAFW-LAQVYCCTGDYAR--AKCLLTKEDLYNRSSACRYLAAFCLVKLYDWQ 167
Query: 70 -----------FSIDTQRAIKCYQRAVSLSPDDSVS---GEALCELLEHGGKESLEVVVC 115
F D + A K + + + S+ G+ L
Sbjct: 168 GALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNL----SNFDRAKECY 223
Query: 116 REASDKSPRAFWAFRRLG--YLQLHHKKWSEAVQ-SLQHAIRGYPTSPHLWEALGLAYHR 172
+EA + + AF +L +L ++W ++ + + L L
Sbjct: 224 KEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTS 283
Query: 173 LGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHY 232
+ Y +I + S LL + + F + L+I N+ +
Sbjct: 284 HEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYP 343
Query: 233 GLASGLLGLAKQCINLGAFRWGASLLEDACKVAEANTRLA---GNMSCIWKLHGDIQL-- 287
+ L G L + + + + A + + I
Sbjct: 344 LHLASLH-------ESGEK---NKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEAR 393
Query: 288 -TYAKC------FPWA--------------EE-----RQSLEFDVETFSA----SIVSWK 317
++K F A ++ + T + +
Sbjct: 394 RYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQ 453
Query: 318 TTCLMAAISSKSSYQRALYLAPWQANIYTDIAITSDLIYSLNEAYGHYQSAWHVSEKMAL 377
++ A Q + L + + ++ + + + A H+Q+A +
Sbjct: 454 LGNILLANEY---LQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNAL----LLVK 506
Query: 378 GALLLEGDNCQFWVTLGCLSNYNGLKQH-----ALIRGLQLDVSLADAWAHIGKLYGEVG 432
E W LG Y LK + AL +GL L + A+ I +Y
Sbjct: 507 KTQSNEKPWAATWANLGHA--YRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKK 564
Query: 433 EKKLARQAFDSARSIDPSLALPW 455
LA + +I P+ +
Sbjct: 565 IPGLAITHLHESLAISPNEIMAS 587
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 54.5 bits (131), Expect = 1e-07
Identities = 53/461 (11%), Positives = 118/461 (25%), Gaps = 72/461 (15%)
Query: 173 LGMFSAAIKSYGRAIEL--DDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSA 230
+ A + +++ + F L ++ G++ + + + +
Sbjct: 97 QQQYKCAAFVGEKVLDITGNPNDAFWL---AQVYCCTGDYARAKCLLTKEDLYNR-SSAC 152
Query: 231 HYGLASGLLGLAK--QCINLGAFRWGASLLEDACKVAEANTRLAGNMSCIWKLHGDIQLT 288
Y A L+ L +NL E + + L G + T
Sbjct: 153 RYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQV-YT 211
Query: 289 YAKCFPWAEE--RQSLEFDVETFSASIVSWKTTCLMAAISSKSSYQRALYLAPWQANIYT 346
F A+E +++L D + + A + +++ + L L
Sbjct: 212 NLSNFDRAKECYKEALMVDAKCYEA----FDQLVSNHLLTADEEWDLVLKLNYSTY-SKE 266
Query: 347 DIAITSDLIYSLNEAYGHYQSAWHVSEKMALGALLLEGDNCQFWVTLGCLSNYNGLKQHA 406
D A L H + L ++ + +
Sbjct: 267 DAAFLRSLYMLKLNKTSHEDE--LRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDV 324
Query: 407 LI---RGLQLDVSLADAWAHIGKLYGEVGEKKLARQAFDSARSIDPSLALPWAGMSADVQ 463
L + L++D D + E GEK + P A+ W +
Sbjct: 325 LAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAV-GIYY 383
Query: 464 ASESLVDDAFESCLRAVQILPLAEFQIGLAKLAKLSGHLSSSQVFGAIQQAIQRGPHYPE 523
+ + +A ++ P +
Sbjct: 384 LCVNKISEARRYF-----------------------------------SKSSTMDPQFGP 408
Query: 524 SHNLYGLVCEARSDYQAAVVSYRLARYAISSSSGTVPNSHFQDISINLARSLSRAGN--- 580
+ + ++ A+ +Y A GT + L + GN
Sbjct: 409 AWIGFAHSFAIEGEHDQAISAYT---TAARLFQGT-HLPYL-----FLGMQHMQLGNILL 459
Query: 581 ALDAVRECESLERQGMLDAEVLQVYAFSLWQLGKYDLALSM 621
A + ++ +L + D +L + A++
Sbjct: 460 ANEYLQSSYALFQY---DPLLLNELGVVAFNKSDMQTAINH 497
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 51.8 bits (124), Expect = 1e-06
Identities = 18/98 (18%), Positives = 38/98 (38%), Gaps = 3/98 (3%)
Query: 6 ALLLQLEDSLEANPDDPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGH 65
ALLL + + + +LG H + + + A + L+ +A +
Sbjct: 501 ALLLV-KKTQSNEKPWAATWANLG-HAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIAL 558
Query: 66 YYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLE 103
Y AI ++++SP++ ++ + L LE
Sbjct: 559 VYLHKK-IPGLAITHLHESLAISPNEIMASDLLKRALE 595
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 46.4 bits (110), Expect = 5e-05
Identities = 43/347 (12%), Positives = 95/347 (27%), Gaps = 70/347 (20%)
Query: 297 EERQSLEFDVETFSASIVSWKTTCLMAAISSKSSYQRALYLAPWQANIYTDIAITSDLIY 356
+ER + D + + W+ LM + Y+ A ++ DI + +
Sbjct: 71 KERNAQNTDSLSREDYLRLWRHDALM-----QQQYKCAAFVG----EKVLDITGNPNDAF 121
Query: 357 SLNEAY---GHYQSAWHVSEKMAL-----GALLLEG----------DNCQFWVTLGCLSN 398
L + Y G Y A + K L L
Sbjct: 122 WLAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRK 181
Query: 399 YNGLKQHALIRGLQLDVSLADAWAHIGKLYGEVGEKKLARQAFDSARSIDPSLALPWAGM 458
L++ + + A G++Y + A++ + A +D
Sbjct: 182 DEKNANKLLMQDGGIKLE-ASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCY------ 234
Query: 459 SADVQASESLVDDAFESCLRAVQILPLAEFQIGLAKLAKLSGHLSSSQVFGAIQQAIQRG 518
+AF+ + + E+ + L +
Sbjct: 235 ------------EAFDQLVSNHLLTADEEWDLVLKL---------------NYSTYSKED 267
Query: 519 PHYPESHNLYGLVCEARSDYQAAVVSYRLARYAISSSSGTVPNSHFQDISINLARSLSRA 578
+ S + L + D Y + + S D+ + A +L
Sbjct: 268 AAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL-------EKSS--DLLLCKADTLFVR 318
Query: 579 GNALDAVRECESLERQGMLDAEVLQVYAFSLWQLGKYDLALSMARNL 625
+D + + + +V ++ SL + G+ + ++ +L
Sbjct: 319 SRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDL 365
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 108 bits (272), Expect = 1e-24
Identities = 63/515 (12%), Positives = 136/515 (26%), Gaps = 66/515 (12%)
Query: 141 KWSEAVQSLQHAIR----GYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFP 196
+ + G + F+ AIK Y AIELD
Sbjct: 2 SHMNGEPDIAQLKGLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVF 61
Query: 197 LLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLASGL--LGLAKQCINLGAFRWG 254
++ G+ K +E AL+I ++ A AS LG +
Sbjct: 62 YSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMF--DLSVL 119
Query: 255 ASLLEDACKVAEANTRLAGNMSCIWKLHGDIQLTYAKCFPWAEERQSLEFDVETFSASIV 314
+ + E N + L+ ++ + SL F + +
Sbjct: 120 SLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLE 179
Query: 315 SWKTTCLMAAISSKSSYQRALYLAPWQANIYTDIAITSDLIYSLNEAYGHYQSAWHVSEK 374
++ + AL + +A L ++ Y S +
Sbjct: 180 VSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDL-----LTKSTDMYHSLLSANTV 234
Query: 375 MALGALLLEGDNCQFWVTLGCLSNYNGLKQHALI---RGLQLDVSLADAWAHIGKLYGEV 431
L + G A + + L + +++ + +
Sbjct: 235 ----DDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPT-PNSYIFLALTLADK 289
Query: 432 GEKKLARQAFDSARSIDPSLALPWAGMSADVQASESLVDDAFESCLRAVQILP---LAEF 488
+ + F A ++P + + +A E +A + P
Sbjct: 290 ENSQEFFKFFQKAVDLNPEYPPTYYHR-GQMYFILQDYKNAKEDFQKAQSLNPENVYPYI 348
Query: 489 QIGLA--KLAKLSGHLSSSQVFGAI---QQAIQRGPHYPESHNLYGLVCEARSDYQAAVV 543
Q+ K K + + + + P PE + + R D+ A+
Sbjct: 349 QLACLLYKQGKFTE---------SEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIK 399
Query: 544 SYRLARYAISSSSGTVPNSHFQDISINLARSLSRAGNALDAVRECESLERQGMLDAEVLQ 603
Y +A + + I + + + +A + + + + ++
Sbjct: 400 QYDIA-KRL--------EEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFN-AAIK 449
Query: 604 VY-----------------AFSLWQLGKYDLALSM 621
+ A Q+ K D A+ +
Sbjct: 450 LLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIEL 484
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 98.3 bits (245), Expect = 3e-21
Identities = 43/258 (16%), Positives = 80/258 (31%), Gaps = 39/258 (15%)
Query: 12 EDSLEANPDDPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQN------AVAFRYLGH 65
+ G+ + + + A + L+P A+ +
Sbjct: 233 TVDDPLRENAALALCYTGIFHFLKNNLLD-AQVLLQESINLHPTPNSYIFLALTLADKEN 291
Query: 66 YYTRFSIDTQRAIKCYQRAVSLSPDDSVS----GEALCELLEHGGKESLEVVVCREASDK 121
Q K +Q+AV L+P+ + G+ L ++ K + E ++A
Sbjct: 292 S--------QEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDY--KNAKED--FQKAQSL 339
Query: 122 SPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIK 181
+P + + +L L K++E+ +PT P + G F AIK
Sbjct: 340 NPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIK 399
Query: 182 SYGRAIELD----------------DTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISS 225
Y A L+ T + L F ++ A ++
Sbjct: 400 QYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDP 459
Query: 226 ENVSAHYGLASGLLGLAK 243
+ A GLA L + K
Sbjct: 460 RSEQAKIGLAQLKLQMEK 477
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 87.9 bits (218), Expect = 5e-18
Identities = 32/235 (13%), Positives = 63/235 (26%), Gaps = 37/235 (15%)
Query: 10 QLEDSLEANPDDPSLHLDLGLHLWENSESK-EKAAEHFVIAAKLNPQNAVAFRYLGHYYT 68
L D+L+ + L S + L A+A Y G ++
Sbjct: 195 LLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHF 254
Query: 69 RFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWA 128
+ + A Q +++L P + +
Sbjct: 255 LKN-NLLDAQVLLQESINLHPTPN-----------------------------------S 278
Query: 129 FRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIE 188
+ L + E + Q A+ P P + G Y L + A + + +A
Sbjct: 279 YIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQS 338
Query: 189 LDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLASGLLGLAK 243
L+ +++P ++ + G F + F A L
Sbjct: 339 LNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGD 393
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 64.0 bits (156), Expect = 2e-10
Identities = 33/226 (14%), Positives = 67/226 (29%), Gaps = 30/226 (13%)
Query: 4 KGALLLQLED----------SLEANPDDPSLHLDLGLHLWENSESKEKAAEHFVIAAKLN 53
+G + L+D + NP++ ++ L L++ ++ F
Sbjct: 316 RGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQ-GKFTESEAFFNETKLKF 374
Query: 54 PQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVS----GEALCELLEHGGKES 109
P + T D AIK Y A L G + + + S
Sbjct: 375 PTLPEVPTFFAEILTDRG-DFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSS 433
Query: 110 LEVVV------------CREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYP 157
+ +A + PR+ A L L+L +K EA++ + +
Sbjct: 434 QDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILAR 493
Query: 158 TSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNI 203
T +A A +++ + ++ G +
Sbjct: 494 TMDEKLQATTFAE--AAKIQKRLRADPIISAKMELTLARYRAKGML 537
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 107 bits (269), Expect = 2e-24
Identities = 34/253 (13%), Positives = 73/253 (28%), Gaps = 29/253 (11%)
Query: 15 LEANPDDPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDT 74
++ +PD+ + +SK A +L A GH +
Sbjct: 53 VDGDPDNYIAYYRRATVFLAMGKSKA-ALPDLTKVIQLKMDFTAARLQRGHLLLKQG-KL 110
Query: 75 QRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGY 134
A +++ + +P ++ EA +L++ R
Sbjct: 111 DEAEDDFKKVLKSNPSENEEKEAQSQLIK-------------------SDEMQRLRSQAL 151
Query: 135 LQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSI 194
++ A+ L + L E + + G AI A +L + +
Sbjct: 152 NAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNT 211
Query: 195 FPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLASGLLGLAKQCINLGAFRWG 254
+ ++ LG+ + + + LK+ ++ KQ L
Sbjct: 212 EAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHY--------KQVKKLNKLIES 263
Query: 255 ASLLEDACKVAEA 267
A L + +A
Sbjct: 264 AEELIRDGRYTDA 276
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 100 bits (251), Expect = 3e-22
Identities = 29/240 (12%), Positives = 73/240 (30%), Gaps = 28/240 (11%)
Query: 8 LLQLEDSLEANPDDPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYY 67
+ L+ LE D L + KA A+KL N AF + Y
Sbjct: 163 IAFLDKILEVCVWDAELRELRA-ECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLY 221
Query: 68 TRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFW 127
+ D + ++ + + L D K +
Sbjct: 222 YQLG-DHELSLSEVRECLKLDQDHKRCFAHY----------------------KQVKKLN 258
Query: 128 AFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSP----HLWEALGLAYHRLGMFSAAIKSY 183
+ ++++A + ++ P+ E + + + AI+
Sbjct: 259 KLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVC 318
Query: 184 GRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLASGLLGLAK 243
++++ ++ L + +L+ + + ++ ++ A + + + GL L +
Sbjct: 319 SEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQ 378
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 89.7 bits (223), Expect = 8e-19
Identities = 43/253 (16%), Positives = 79/253 (31%), Gaps = 51/253 (20%)
Query: 6 ALLLQLEDSLEANPDDPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGH 65
+ L E+ + D HL+LG L + + A F A +P N +A+
Sbjct: 10 GVDLGTENLYFQSMADVEKHLELGKKLLAAGQLAD-ALSQFHAAVDGDPDNYIAYYRRAT 68
Query: 66 YYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRA 125
+ ++ A+ + + L D +
Sbjct: 69 VFLAMG-KSKAALPDLTKVIQLKMDFT--------------------------------- 94
Query: 126 FWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEAL---------------GLAY 170
A + G+L L K EA + ++ P+ EA L
Sbjct: 95 -AARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNA 153
Query: 171 HRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSA 230
G ++AAI + +E+ F+ G RK + + A K+ ++N A
Sbjct: 154 FGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEA 213
Query: 231 HYGLASGLLGLAK 243
Y +++ L
Sbjct: 214 FYKISTLYYQLGD 226
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 88.6 bits (220), Expect = 2e-18
Identities = 48/359 (13%), Positives = 106/359 (29%), Gaps = 41/359 (11%)
Query: 120 DKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAA 179
+S LG L + ++A+ A+ G P + + + +G AA
Sbjct: 20 FQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAA 79
Query: 180 IKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGL----- 234
+ + I+L L+ G++ L G + + F+ LK +
Sbjct: 80 LPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIK 139
Query: 235 ---ASGLLGLAKQCINLGAFRWGASLLEDACKVAEANTRLAGNMSCIWKLHGDIQLTYAK 291
L A G + + L+ +V + L + + G+ +
Sbjct: 140 SDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRK---- 195
Query: 292 CFPWAEE--RQSLEFDVETFSA----SIVSWKTTCLMAAISSKSSYQRALYLAPWQANIY 345
A + + + + A S + ++ ++ S + L L +
Sbjct: 196 ----AISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSL---SEVRECLKLDQDHKRCF 248
Query: 346 TDIAITSDLIYSLNEAY-----GHYQSAWHVSEKMALGALLLEGDNCQFWVTLGCL--SN 398
L + A G Y A E + E ++ V
Sbjct: 249 AHYKQVKKLNKLIESAEELIRDGRYTDATSKYES----VMKTEPSIAEYTVRSKERICHC 304
Query: 399 YNGLKQH-----ALIRGLQLDVSLADAWAHIGKLYGEVGEKKLARQAFDSARSIDPSLA 452
++ ++ LQ++ +A + Y A Q +++A+ + +
Sbjct: 305 FSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQ 363
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 82.4 bits (204), Expect = 2e-16
Identities = 54/443 (12%), Positives = 120/443 (27%), Gaps = 80/443 (18%)
Query: 128 AFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAI 187
G + +++ ++ + LG G + A+ + A+
Sbjct: 5 HHHSSGVDLGTENLYFQSMADVEKHL-----------ELGKKLLAAGQLADALSQFHAAV 53
Query: 188 ELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLASGLLGLAKQCIN 247
+ D + +FL +G + + +++ + +A LL K
Sbjct: 54 DGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGK---- 109
Query: 248 LGAFRWGASLLEDACKVAEANTRLAGNMSCIWKLHGDIQLTYAKCFPWAEERQSLEFDVE 307
L++A + + + + + QL + + F
Sbjct: 110 ----------LDEAEDDFKKVLKSNPSENEEKEAQS--QLIKSDEMQRLRSQALNAFGSG 157
Query: 308 TFSASIVSWKTTCLMAAISSKSSYQRALYLAPWQANIYTDIAITSDLIYSLNEAYGHYQS 367
++A+I + + L + W A + A +A ++
Sbjct: 158 DYTAAI---------------AFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKA 202
Query: 368 AWHVSEKMALGALLLEGDNCQFWVTLGCLSNYNGLKQHALI---RGLQLDVSLADAWAHI 424
A L+ DN + + + L G + +L L+LD +AH
Sbjct: 203 A-----------SKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHY 251
Query: 425 GKLYG------------EVGEKKLARQAFDSARSIDPSLALPWAG---MSADVQASESLV 469
++ G A ++S +PS+A + +
Sbjct: 252 KQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKP 311
Query: 470 DDAFESCLRAVQILP-LAEFQIGLAKLAKLSGHLSSSQVFGAI---QQAIQRGPHYPESH 525
+A C +Q+ P A+ + AI + A + + +
Sbjct: 312 VEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYD-----EAIQDYETAQEHNENDQQIR 366
Query: 526 NLYGLVCEARSDYQAAVVSYRLA 548
Q L
Sbjct: 367 EGLEKAQRLLKQSQKRDYYKILG 389
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 80.1 bits (198), Expect = 1e-15
Identities = 24/201 (11%), Positives = 53/201 (26%), Gaps = 24/201 (11%)
Query: 11 LEDSLEANPDDPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRF 70
L+ + + D+ + ++ + E + KL+ + F +
Sbjct: 200 LKAASKLKNDNTEAFYKISTLYYQLGDH-ELSLSEVRECLKLDQDHKRCFAHYKQVKKLN 258
Query: 71 SI-----------DTQRAIKCYQRAVSLSPDDSVS--------GEALCELLEHGGKESLE 111
+ A Y+ + P + + + E++
Sbjct: 259 KLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKP--VEAIR 316
Query: 112 VVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYH 171
V C E P A + L + + EA+Q + A + E L A
Sbjct: 317 V--CSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQR 374
Query: 172 RLGMFSAAIKSYGRAIELDDT 192
L ++ +
Sbjct: 375 LLKQSQKRDYYKILGVKRNAK 395
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 55.5 bits (134), Expect = 6e-08
Identities = 31/233 (13%), Positives = 67/233 (28%), Gaps = 26/233 (11%)
Query: 411 LQLDVSLADAWAHIGKLYGEVGEKKLARQAFDSARSIDPSLALPWAGMSADVQASESLV- 469
+QL + A G L + G+ A F +PS S +++ E
Sbjct: 87 IQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRL 146
Query: 470 -------------DDAFESCLRAVQILP-LAEFQIGLAKLAKLSGHLSSSQVFGAIQQAI 515
A + +++ AE + A+ G + ++ A
Sbjct: 147 RSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAI--SDLKAAS 204
Query: 516 QRGPHYPESHNLYGLVCEARSDYQAAVVSYRLARYAISSSSGTVPNSHFQ----DISINL 571
+ E+ + D++ ++ R + + Q + I
Sbjct: 205 KLKNDNTEAFYKISTLYYQLGDHELSLSEVRECL-KLDQDHKRCFAHYKQVKKLNKLIES 263
Query: 572 ARSLSRAGNALDAVREC-ESLERQGMLDAEVLQVY---AFSLWQLGKYDLALS 620
A L R G DA + ++ + + ++ + K A+
Sbjct: 264 AEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIR 316
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 49.7 bits (119), Expect = 4e-06
Identities = 32/217 (14%), Positives = 72/217 (33%), Gaps = 18/217 (8%)
Query: 418 ADAWAHIGKLYGEVGEKKLARQAFDSARSIDPSLALPWAGMSADVQASESL--VDDAFES 475
+ +GK G+ A F +A DP + + + ++ A
Sbjct: 26 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRAT---VFLAMGKSKAALPD 82
Query: 476 CLRAVQILPLAEFQIGLAKLAKLSGHLSSSQVFGAIQ---QAIQRGPHYPESHNLYGLVC 532
+ +Q+ +F + L L ++ A + ++ P E +
Sbjct: 83 LTKVIQLKM--DFTAARLQRGHL--LLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLI 138
Query: 533 ---EARSDYQAAVVSYRLARY--AISSSSGTV-PNSHFQDISINLARSLSRAGNALDAVR 586
E + A+ ++ Y AI+ + ++ A + G A+
Sbjct: 139 KSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAIS 198
Query: 587 ECESLERQGMLDAEVLQVYAFSLWQLGKYDLALSMAR 623
+ ++ + + E + +QLG ++L+LS R
Sbjct: 199 DLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVR 235
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 43.9 bits (104), Expect = 3e-04
Identities = 27/215 (12%), Positives = 59/215 (27%), Gaps = 31/215 (14%)
Query: 418 ADAWAHIGKLYGEVGEKKLARQAFDSARSIDPSLALPWAGMSADVQASESLVDDAFESCL 477
G G + + + + + DA
Sbjct: 3 HHHHHSSGVDLGTENLYFQSMADVEKHLEL------------GKKLLAAGQLADALSQFH 50
Query: 478 RAVQILP---LAEFQIGLAKLAKLSGHLSSSQVFGAI---QQAIQRGPHYPESHNLYGLV 531
AV P +A ++ LA G A+ + IQ + + G +
Sbjct: 51 AAVDGDPDNYIAYYRRATVFLAM--GKSK-----AALPDLTKVIQLKMDFTAARLQRGHL 103
Query: 532 CEARSDYQAAVVSYRLA------RYAISSSSGTVPNSHFQDISINLARSLSRAGNALDAV 585
+ A ++ + + S + A + +G+ A+
Sbjct: 104 LLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAI 163
Query: 586 RECESLERQGMLDAEVLQVYAFSLWQLGKYDLALS 620
+ + + DAE+ ++ A + G+ A+S
Sbjct: 164 AFLDKILEVCVWDAELRELRAECFIKEGEPRKAIS 198
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 105 bits (264), Expect = 2e-24
Identities = 28/220 (12%), Positives = 62/220 (28%), Gaps = 21/220 (9%)
Query: 15 LEANPDDPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDT 74
++ +PD+ + +SK A L A GH +
Sbjct: 30 VDGDPDNYIAYYRRATVFLAMGKSKA-ALPDLTKVIALKMDFTAARLQRGHLLLKQG-KL 87
Query: 75 QRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGY 134
A +++ + +P + EA +L++ R
Sbjct: 88 DEAEDDFKKVLKSNPSEQEEKEAESQLVK-------------------ADEMQRLRSQAL 128
Query: 135 LQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSI 194
++ A+ L + L E + + G AI A +L +
Sbjct: 129 DAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNT 188
Query: 195 FPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGL 234
+ ++ LG+ + + + LK+ ++
Sbjct: 189 EAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHY 228
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 100 bits (250), Expect = 1e-22
Identities = 31/245 (12%), Positives = 77/245 (31%), Gaps = 34/245 (13%)
Query: 8 LLQLEDSLEANPDDPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLG--H 65
+ L+ LE D L + KA A+KL N AF + +
Sbjct: 140 ITFLDKILEVCVWDAELRELRA-ECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLY 198
Query: 66 YYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRA 125
Y D + ++ + + L D K +
Sbjct: 199 YQLG---DHELSLSEVRECLKLDQDHK---RCFAHY-------------------KQVKK 233
Query: 126 FWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSP----HLWEALGLAYHRLGMFSAAIK 181
+ ++++A + ++ P+ E + + + AI+
Sbjct: 234 LNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIR 293
Query: 182 SYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGL--ASGLL 239
++++ ++ L + +L+ + + ++ ++ A + + + GL A LL
Sbjct: 294 ICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLL 353
Query: 240 GLAKQ 244
+++
Sbjct: 354 KQSQK 358
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 86.2 bits (214), Expect = 5e-18
Identities = 34/206 (16%), Positives = 62/206 (30%), Gaps = 31/206 (15%)
Query: 57 AVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVS----GEALCELLEHGGKESLEV 112
G A+ + AV PD+ ++ + + K +L
Sbjct: 10 GKKLLAAGQL--------ADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKS--KAALP- 58
Query: 113 VVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALG----- 167
+ A + G+L L K EA + ++ P+ EA
Sbjct: 59 -DLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKA 117
Query: 168 ----------LAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQF 217
L ++AAI + +E+ F+ G RK +
Sbjct: 118 DEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDL 177
Query: 218 QLALKISSENVSAHYGLASGLLGLAK 243
+ A K+ S+N A Y +++ L
Sbjct: 178 KAASKLKSDNTEAFYKISTLYYQLGD 203
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 84.6 bits (210), Expect = 2e-17
Identities = 46/355 (12%), Positives = 104/355 (29%), Gaps = 49/355 (13%)
Query: 128 AFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAI 187
LG L + ++A+ A+ G P + + + +G AA+ + I
Sbjct: 5 KHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVI 64
Query: 188 ELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLA--------SGLL 239
L L+ G++ L G + + F+ LK + + L
Sbjct: 65 ALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLR 124
Query: 240 GLAKQCINLGAFRWGASLLEDACKVAEANTRLAGNMSCIWKLHGDIQLTYAKCFPWAEE- 298
A + + + L+ +V + L + + G+ + A
Sbjct: 125 SQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRK--------AISD 176
Query: 299 -RQSLEFDVETFSASIVSWKTTCLMA------AISSKSSYQRALYLAPWQANIYTDIAIT 351
+ + + + + +T ++ S + L L +
Sbjct: 177 LKAASKLKSD--NTEAFYKISTLYYQLGDHELSL---SEVRECLKLDQDHKRCFAHYKQV 231
Query: 352 SDLIYSLNEAY-----GHYQSAWHVSEKMALGALLLEGDNCQFWVTLGCLSN----YNGL 402
L + A G Y A E + E ++ V ++
Sbjct: 232 KKLNKLIESAEELIRDGRYTDATSKYES----VMKTEPSVAEYTVRS--KERICHCFSKD 285
Query: 403 KQH--ALI---RGLQLDVSLADAWAHIGKLYGEVGEKKLARQAFDSARSIDPSLA 452
++ A+ LQ++ +A + Y A Q +++A+ + +
Sbjct: 286 EKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQ 340
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 79.6 bits (197), Expect = 8e-16
Identities = 52/389 (13%), Positives = 108/389 (27%), Gaps = 69/389 (17%)
Query: 163 WEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALK 222
LG G + A+ + A++ D + +FL +G + + +
Sbjct: 6 HLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIA 65
Query: 223 ISSENVSAHYGLASGLLGLAKQCINLGAFRWGASLLEDACKVAEANTRLAGNMSCIWKLH 282
+ + +A LL K L++A + + + +
Sbjct: 66 LKMDFTAARLQRGHLLLKQGK--------------LDEAEDDFKKVLKSNPSEQEEKEAE 111
Query: 283 GDIQLTYAKCFPWAEERQSLEFDVETFSASIVSWKTTCLMAAISSKSSYQRALYLAPWQA 342
QL A + FD ++A+I + + L + W A
Sbjct: 112 S--QLVKADEMQRLRSQALDAFDGADYTAAI---------------TFLDKILEVCVWDA 154
Query: 343 NIYTDIAITSDLIYSLNEAYGHYQSAWHVSEKMALGALLLEGDNCQFWVTLGCLSNYNGL 402
+ A +A ++ A L+ DN + + + L G
Sbjct: 155 ELRELRAECFIKEGEPRKAISDLKA-----------ASKLKSDNTEAFYKISTLYYQLGD 203
Query: 403 KQHALI---RGLQLDVSLADAWAHIGKLYGEVGEKKLARQAFDSAR------------SI 447
+ +L L+LD +AH ++ + A + R
Sbjct: 204 HELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT 263
Query: 448 DPSLALPWAG---MSADVQASESLVDDAFESCLRAVQILP-LAEFQIGLAKLAKLSGHLS 503
+PS+A + + +A C +Q+ P A+ +
Sbjct: 264 EPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYD 323
Query: 504 SSQVFGAI---QQAIQRGPHYPESHNLYG 529
AI + A + + +
Sbjct: 324 -----EAIQDYEAAQEHNENDQQIREGLE 347
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 57.3 bits (139), Expect = 1e-08
Identities = 51/382 (13%), Positives = 95/382 (24%), Gaps = 85/382 (22%)
Query: 197 LLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLASGLLGLAKQCINLGAFRWGAS 256
LE G L G + QF A+ +N A+Y A+ L + K + A
Sbjct: 6 HLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGK---SKAA------ 56
Query: 257 LLEDACKVAEANTRLAG---NMSCIWKLHGDIQLTYAKCFPWAEERQSLEFDVETFSASI 313
L D KV + G +
Sbjct: 57 -LPDLTKVIALKMDFTAARLQRGHLLLKQGKLD--------------------------- 88
Query: 314 VSWKTTCLMAAISSKSSYQRALYLAPWQANIYTDIAITSDLIYSLNEAYGHYQSAWHVSE 373
A +++ L P + + + +E A +
Sbjct: 89 ---------EAEDD---FKKVLKSNPSEQEEKEAES----QLVKADEMQRLRSQALDAFD 132
Query: 374 K----MALG----ALLLEGDNCQFWVTLGCLSNYNGLKQH-----ALIRGLQLDVSLADA 420
A+ L + + + + + L +L +A
Sbjct: 133 GADYTAAITFLDKILEVCVWDAELRELRAEC--FIKEGEPRKAISDLKAASKLKSDNTEA 190
Query: 421 WAHIGKLYGEVGEKKLARQAFDSARSIDPSLALPWAGM-----------SADVQASESLV 469
+ I LY ++G+ +L+ +D +A SA+ +
Sbjct: 191 FYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRY 250
Query: 470 DDAFESCLRAVQILPLAEFQIGLAKLAKLSGHLSSSQVFGAIQ---QAIQRGPHYPESHN 526
DA ++ P +K + AI+ + +Q P +
Sbjct: 251 TDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALK 310
Query: 527 LYGLVCEARSDYQAAVVSYRLA 548
Y A+ Y A
Sbjct: 311 DRAEAYLIEEMYDEAIQDYEAA 332
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 53.0 bits (128), Expect = 3e-07
Identities = 37/269 (13%), Positives = 77/269 (28%), Gaps = 31/269 (11%)
Query: 379 ALLLEGDNCQFWVTLGCLSNYNGLKQHALI---RGLQLDVSLADAWAHIGKLYGEVGEKK 435
A+ + DN + + G + AL + + L + A G L + G+
Sbjct: 29 AVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLD 88
Query: 436 LARQAFDSARSIDPSLALPWAGMSADVQASESLV--------------DDAFESCLRAVQ 481
A F +PS S V+A E A + ++
Sbjct: 89 EAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILE 148
Query: 482 ILP-LAEFQIGLAKLAKLSGHLSSSQVFGAIQQAIQRGPHYPESHNLYGLVCEARSDYQA 540
+ AE + A+ G + ++ A + E+ + D++
Sbjct: 149 VCVWDAELRELRAECFIKEGEPRKAI--SDLKAASKLKSDNTEAFYKISTLYYQLGDHEL 206
Query: 541 AVVSYRLA-----RYAISSSSGTVPNSHFQDISINLARSLSRAGNALDAVREC-ESLERQ 594
++ R + + + I A L R G DA + ++ +
Sbjct: 207 SLSEVRECLKLDQDHKRCFAH--YKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE 264
Query: 595 GMLDAEVLQVY---AFSLWQLGKYDLALS 620
+ ++ + K A+
Sbjct: 265 PSVAEYTVRSKERICHCFSKDEKPVEAIR 293
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 48.0 bits (115), Expect = 1e-05
Identities = 29/221 (13%), Positives = 67/221 (30%), Gaps = 32/221 (14%)
Query: 418 ADAWAHIGKLYGEVGEKKLARQAFDSARSIDPSLALPWAGMSADVQASESL--VDDAFES 475
+ +GK G+ A F +A DP + + + ++ A
Sbjct: 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRAT---VFLAMGKSKAALPD 59
Query: 476 CLRAVQILP-LAEFQIGLAKLAKLSGHLSSSQVFGAI---QQAIQRGPHYPESHNLYGLV 531
+ + + ++ L G L A ++ ++ P E +
Sbjct: 60 LTKVIALKMDFTAARLQRGHLLLKQGKLD-----EAEDDFKKVLKSNPSEQEEKEAESQL 114
Query: 532 C---EARSDYQAAVVSYRLARY---------AISSSSGTVPNSHFQDISINLARSLSRAG 579
E + A+ ++ A Y + ++ A + G
Sbjct: 115 VKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC----VWDA--ELRELRAECFIKEG 168
Query: 580 NALDAVRECESLERQGMLDAEVLQVYAFSLWQLGKYDLALS 620
A+ + ++ + + E + +QLG ++L+LS
Sbjct: 169 EPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLS 209
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258 | Back alignment and structure |
|---|
Score = 101 bits (255), Expect = 5e-24
Identities = 31/233 (13%), Positives = 70/233 (30%), Gaps = 15/233 (6%)
Query: 15 LEANPDDPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDT 74
E + D + + +E E E A A + + ++ + + R +
Sbjct: 32 WELHKD-ITYLNNRAAAEYEKGE-YETAISTLNDAVEQGREMRADYKVISKSFARIG-NA 88
Query: 75 QRAIKCYQRAVSLSPDDSV---SGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRR 131
+ ++ + + + L +L ++ L+ + +P R
Sbjct: 89 YHKLGDLKKTIEYYQKSLTEHRTADILTKLRNA--EKELKK--AEAEAYVNPEKAEEARL 144
Query: 132 LGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDD 191
G W AV++ I+ P + A +L F AI +AIE D
Sbjct: 145 EGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDP 204
Query: 192 TSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLASGLLGLAKQ 244
+ + + + + +E A +E + + +
Sbjct: 205 NFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSA-----REIDQL 252
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258 | Back alignment and structure |
|---|
Score = 52.6 bits (127), Expect = 2e-07
Identities = 13/81 (16%), Positives = 29/81 (35%), Gaps = 1/81 (1%)
Query: 163 WEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALK 222
+A G +++ F AI+ Y +A EL + L G + + A++
Sbjct: 8 EKAEGNKFYKARQFDEAIEHYNKAWELHKDITY-LNNRAAAEYEKGEYETAISTLNDAVE 66
Query: 223 ISSENVSAHYGLASGLLGLAK 243
E + + ++ +
Sbjct: 67 QGREMRADYKVISKSFARIGN 87
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258 | Back alignment and structure |
|---|
Score = 48.3 bits (116), Expect = 6e-06
Identities = 24/222 (10%), Positives = 51/222 (22%), Gaps = 36/222 (16%)
Query: 339 PWQANIYTDIAITSDLIYSLNEAYGHYQSAWHVSEKMA----LGALLLEGDNCQFWVTLG 394
A+ +EA HY AW + + + A E +
Sbjct: 2 GSMADKEKAEGNKFYKARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYE-----T 56
Query: 395 CLSNYNGLKQHALIRGLQLDVSLADAWAHIGKLYGEVGEKKLARQAFDSARSIDPSLALP 454
+S N ++ + + I K + +G
Sbjct: 57 AISTLN--------DAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTE 108
Query: 455 WAGMSADVQASESLVDDAFESCLRAVQILP---LAEFQIGLA--KLAKLSGHLSSSQVFG 509
+AD+ + + + P G +
Sbjct: 109 HR--TADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWP---------N 157
Query: 510 AIQ---QAIQRGPHYPESHNLYGLVCEARSDYQAAVVSYRLA 548
A++ + I+R P ++ + A+ A
Sbjct: 158 AVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKA 199
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258 | Back alignment and structure |
|---|
Score = 42.2 bits (100), Expect = 5e-04
Identities = 25/215 (11%), Positives = 65/215 (30%), Gaps = 33/215 (15%)
Query: 416 SLADAWAHIGKLYGEVGEKKLARQAFDSARSIDPSLALPWAGMSADVQASESLVDDAFES 475
S+AD G + + + A + ++ A + + A + + + A +
Sbjct: 3 SMADKEKAEGNKFYKARQFDEAIEHYNKAWELHKDITY-LNNR-AAAEYEKGEYETAIST 60
Query: 476 CLRAVQI---LPLAEFQIGLAKLAKLSGHLSSSQVFGAIQ---QAIQRGPHYPESHNLYG 529
AV+ + I + A++ + + + I+ H
Sbjct: 61 LNDAVEQGREMRADYKVISKS-FARIG------NAYHKLGDLKKTIEYYQKSLTEHRT-A 112
Query: 530 LVCEARSDYQAAVVSYRLARYAISSSSGTVPNSHFQDISINLARSLSRAGNALDAVREC- 588
+ + + + Y N + + + + +AV+
Sbjct: 113 DILTKLRNAEKELKKAEAEAYV---------NPEKAEEARLEGKEYFTKSDWPNAVKAYT 163
Query: 589 ESLERQGMLDAEVLQVY---AFSLWQLGKYDLALS 620
E ++ E + Y A +L +L + A++
Sbjct: 164 EMIK----RAPEDARGYSNRAAALAKLMSFPEAIA 194
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 101 bits (254), Expect = 7e-24
Identities = 35/241 (14%), Positives = 68/241 (28%), Gaps = 22/241 (9%)
Query: 15 LEANPDDPSLHLDLGLHLWENSESKE--KAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSI 72
+ P ++ + +E ++ K E + + F Y G +
Sbjct: 30 EAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKG- 88
Query: 73 DTQRAIKCYQRAVSLSPDDSVS----GEALCELLEHGGKESLEVVVCREASDKSPRAFWA 128
AI+ YQ AV G +++ + +
Sbjct: 89 QDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNF--PLAIQY--MEKQIRPTTTDPKV 144
Query: 129 FRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGM---FSAAIKSYGR 185
F LG ++K++ +A S + P + A A Y +
Sbjct: 145 FYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEK 204
Query: 186 AIELDDTSIFP----LLES----GNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLASG 237
IE+ L+E+ + + + K ++ L + N A GL
Sbjct: 205 LIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMK 264
Query: 238 L 238
L
Sbjct: 265 L 265
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 91.2 bits (227), Expect = 3e-20
Identities = 27/190 (14%), Positives = 57/190 (30%), Gaps = 15/190 (7%)
Query: 57 AVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVS----GEALCELLEHGGKESLEV 112
A +Y AI+ + + + + EL ++ + +
Sbjct: 10 ADFLFKNNNY--------AEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKY--DLAQKD 59
Query: 113 VVC-REASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYH 171
+ + + F G + + + S A+Q Q A+ T ++ +G ++
Sbjct: 60 IETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFY 119
Query: 172 RLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAH 231
G F AI+ + I T E G + + K F L++ +
Sbjct: 120 NKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGY 179
Query: 232 YGLASGLLGL 241
A
Sbjct: 180 LWRARANAAQ 189
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 68.5 bits (168), Expect = 1e-12
Identities = 16/111 (14%), Positives = 38/111 (34%), Gaps = 3/111 (2%)
Query: 128 AFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIK---SYG 184
R + ++EA++ SP+++ + Y+ L + A K +Y
Sbjct: 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYF 64
Query: 185 RAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLA 235
+ G I + G ++Q+Q A+ + + + +
Sbjct: 65 SKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIG 115
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 65.8 bits (161), Expect = 9e-12
Identities = 21/174 (12%), Positives = 55/174 (31%), Gaps = 15/174 (8%)
Query: 14 SLEANPDDPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSID 73
+++ + ++ +G + N + A ++ + + F LG Y +
Sbjct: 100 AVDRDTTRLDMYGQIGS-YFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNK-E 157
Query: 74 TQRAIKCYQRAVSLSPDDSVS----GEALCELLEHGG--------KESLEVVVCREASDK 121
+A + + + L P+ + A ++ +EV A K
Sbjct: 158 YVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYK 217
Query: 122 SPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGM 175
A + Y ++ +A + ++ + PT+ + L +
Sbjct: 218 -DELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEHHHH 270
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 44.2 bits (105), Expect = 1e-04
Identities = 20/237 (8%), Positives = 60/237 (25%), Gaps = 41/237 (17%)
Query: 324 AISSKSSYQRALYLAPWQANIYTDIAITSDLIYSLNEAYGHYQSAWHVSEKMALGALLLE 383
A +Y + ++ + + A YQ+A + +
Sbjct: 56 AQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAA-----------VDRD 104
Query: 384 GDNCQFWVTLGCLSNYNGLKQH-----ALIRGLQLDVSLADAWAHIGKLYGEVGEKKLAR 438
+ +G + + + ++ + + +G+ Y E A
Sbjct: 105 TTRLDMYGQIGSY--FYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKAD 162
Query: 439 QAFDSARSIDPSLALPWA--GMSADVQASESLVDDAFESCLRAVQILP-----------L 485
+F + P++ + + + Q ++ A + +++
Sbjct: 163 SSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIE 222
Query: 486 AEFQIGLAKLAKLSGHLSSSQVFGAI---QQAIQRGPHYPESHNLYGLVCEARSDYQ 539
A I A + + P ++ + + E +
Sbjct: 223 ANEYIAYYYTIN-------RDKVKADAAWKNILALDPTNKKAIDGLKMKLEHHHHHH 272
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 43.4 bits (103), Expect = 2e-04
Identities = 17/147 (11%), Positives = 41/147 (27%), Gaps = 13/147 (8%)
Query: 409 RGLQLDVSLADAWAHIGKLYGEVGEKKLAR---QAFDSARSIDPSLALPWAGMSADVQAS 465
+ + + Y E+ + LA+ + + S + + + + +
Sbjct: 28 KLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYY-GKILMK 86
Query: 466 ESLVDDAFESCLRAVQILP-LAEFQIGLAKLAKLSGHLSSSQVFGAI---QQAIQRGPHY 521
+ A + AV + + G+ AI ++ I+
Sbjct: 87 KGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFP-----LAIQYMEKQIRPTTTD 141
Query: 522 PESHNLYGLVCEARSDYQAAVVSYRLA 548
P+ G +Y A S+
Sbjct: 142 PKVFYELGQAYYYNKEYVKADSSFVKV 168
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 105 bits (265), Expect = 9e-24
Identities = 34/233 (14%), Positives = 76/233 (32%), Gaps = 10/233 (4%)
Query: 37 ESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSV--- 93
E+ + KL + A++ + G + + D A + ++A+ L P +
Sbjct: 217 RLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKN-DPLGAHEDIKKAIELFPRVNSYIY 275
Query: 94 SGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAI 153
+ + + E +A + G + + + +A + A
Sbjct: 276 MALIMADRNDS--TEYYNY--FDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAK 331
Query: 154 RGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKG 213
P + + L +R F + A + I +F K
Sbjct: 332 ELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKA 391
Query: 214 VEQFQLALKISSENVSAHY--GLASGLLGLAKQCINLGAFRWGASLLEDACKV 264
++Q+ LA+++ ++ + G L + + F +LLE A K+
Sbjct: 392 LKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKL 444
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 102 bits (256), Expect = 1e-22
Identities = 69/514 (13%), Positives = 143/514 (27%), Gaps = 70/514 (13%)
Query: 128 AFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAI 187
A + G +KK+ +A++ A+ P + L Y +G ++ +A+
Sbjct: 8 ALKDKGNQFFRNKKYDDAIKYYNWALELKED-PVFYSNLSACYVSVGDLKKVVEMSTKAL 66
Query: 188 ELDDTSIFPLLESGNIFLMLGNFRKGVEQF-QLALKISSENVSAHYGLASGLLGLAKQCI 246
EL LL + LG F + L+L + S L L A +
Sbjct: 67 ELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKL 126
Query: 247 NLGAFRWGASLLEDACKVAEANTRLAGNMSCIWKLHGDIQLTYAKCFPWAEERQSLEFDV 306
D T L+ + K + S+
Sbjct: 127 K--------EKFGDIDTATATPTELSTQPAKERKDKQENL-------------PSVTSMA 165
Query: 307 ETFSASIVSWKTTCLMAAISSKSSYQRALYLAPWQANIYTDIAITSDLIYSLNEAYGHYQ 366
F + + S +A ++
Sbjct: 166 SFFGIFKPELTFANYDESNEADKELMNG-----LSNLYKRSPESYDKADESFTKAARLFE 220
Query: 367 SAWHVSEKMALGALLLEGDNCQFWVTLGCLSNYNGLKQHALI---RGLQLDVSLADAWAH 423
+ + L+ G A + ++L +++ +
Sbjct: 221 EQLDKNNE----DEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR-VNSYIY 275
Query: 424 IGKLYGEVGEKKLARQAFDSARSIDPSLALPWAGMSADVQASESLVDDAFESCLRAVQIL 483
+ + + + FD A +D + + + + D A + +A ++
Sbjct: 276 MALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHR-GQMNFILQNYDQAGKDFDKAKELD 334
Query: 484 P---LAEFQIGLAKLAKLSGHLSSSQVFGAIQQAIQRGPHYPESHNLYGLVCEARSDYQA 540
P Q+ + + +F +A ++ P PE N + + ++D+
Sbjct: 335 PENIFPYIQLACL-AYRENKFDDCETLF---SEAKRKFPEAPEVPNFFAEILTDKNDFDK 390
Query: 541 AVVSYRLARYAISSSSGTVPNSHFQDISINLARSLSRAGNAL---------DAVRECE-S 590
A+ Y L AI + I + +A + +A +A E +
Sbjct: 391 ALKQYDL---AIEL------ENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKA 441
Query: 591 LERQGMLDAEVLQVY---AFSLWQLGKYDLALSM 621
+ LD Q A Q D A+++
Sbjct: 442 SK----LDPRSEQAKIGLAQMKLQQEDIDEAITL 471
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 101 bits (254), Expect = 2e-22
Identities = 39/263 (14%), Positives = 80/263 (30%), Gaps = 22/263 (8%)
Query: 3 EKGALLLQLEDSLEA----------NPDDPSLHLDLGLHLWENSESKEKAAEHFVIAAKL 52
G D L A P S + L + + ++ + +F A KL
Sbjct: 242 HTGIFKFLKNDPLGAHEDIKKAIELFPRVNSYI-YMALIMADRND-STEYYNYFDKALKL 299
Query: 53 NPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEV 112
+ N+ + + G + +A K + +A L P++ L L K
Sbjct: 300 DSNNSSVYYHRGQMNFILQ-NYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCE 358
Query: 113 VVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHR 172
+ EA K P A + + +A++ AI ++ + +
Sbjct: 359 TLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGK 418
Query: 173 ---------LGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKI 223
+ F A +A +LD S + + L + + + F+ + +
Sbjct: 419 ATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADL 478
Query: 224 SSENVSAHYGLASGLLGLAKQCI 246
+ + +Q I
Sbjct: 479 ARTMEEKLQAITFAEAAKVQQRI 501
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 97.5 bits (243), Expect = 5e-21
Identities = 80/594 (13%), Positives = 160/594 (26%), Gaps = 121/594 (20%)
Query: 53 NPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEV 112
+ A+A + G+ + R AIK Y A+ L D
Sbjct: 2 KDKYALALKDKGNQFFRNK-KYDDAIKYYNWALELKEDP--------------------- 39
Query: 113 VVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHR 172
F++ Y+ + + V+ A+ P + A
Sbjct: 40 ------------VFYSNLSACYVSV--GDLKKVVEMSTKALELKPDYSKVLLRRASANEG 85
Query: 173 LGMFSAAIKSYGRA---IELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVS 229
LG F+ A+ + +D SI P+LE + ++ A +E +
Sbjct: 86 LGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELST 145
Query: 230 AHYGLASGLLGLAKQCINLGAFRWGASLLEDACKVAEANTRLAGNMSCIWKLHGDIQLTY 289
++ +F E+N M+ + L+ +Y
Sbjct: 146 QPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESY 205
Query: 290 AKCFPWAEERQSLEFDVETFSASIVSWKTTCLMAAISSKSSYQRALYLAPWQANIYTDIA 349
K +S F + L A
Sbjct: 206 DK------ADESFTKAARLFEEQL---------------DKNNEDEKLKEKLAISLEHTG 244
Query: 350 ITSDLIYSLNEAYGHYQSAWHVSEKMA----LGALLLEGDNCQFWVTLGCLSNYNGLKQH 405
I L A+ + A + ++ + ++ + ++ + ++
Sbjct: 245 IFKFLKNDPLGAHEDIKKAIELFPRVNSYIYMALIMADRNDST-----EYYNYFD----- 294
Query: 406 ALIRGLQLDVSLADAWAHIGKLYGEVGEKKLARQAFDSARSIDPSLALPWAGMSADVQAS 465
+ L+LD + + + H G++ + A + FD A+ +DP P+ + A +
Sbjct: 295 ---KALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQL-ACLAYR 350
Query: 466 ESLVDDAFESCLRAVQILP---LAEFQIG--LAKLAKLSGHLSSSQVFGAIQ---QAIQR 517
E+ DD A + P L A++ AI+
Sbjct: 351 ENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFD---------KALKQYDLAIEL 401
Query: 518 GPHYPESHNLYGLV---------CEARSDYQAAVVSYRLARYAISSSSGTVPNSHFQDIS 568
+ + ++ A A + +
Sbjct: 402 ENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEK---ASKL------DPRSEQAK 452
Query: 569 INLARSLSRAGN---ALDAVRECESLERQGMLDAEVLQVYAFSLWQLGKYDLAL 619
I LA+ + + A+ E L R E LQ F+ + K +
Sbjct: 453 IGLAQMKLQQEDIDEAITLFEESADLART---MEEKLQAITFA--EAAKVQQRI 501
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 84.0 bits (208), Expect = 9e-17
Identities = 59/509 (11%), Positives = 118/509 (23%), Gaps = 116/509 (22%)
Query: 4 KGALLLQLED----------SLEANPDDPSLHLDLGLHLWENSESKEKAAEHF-VIAAKL 52
A + + D +LE PD + L E A V++
Sbjct: 45 LSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRAS-ANEGLGKFADAMFDLSVLSLNG 103
Query: 53 NPQNAVAFRYLGHYYTRFSI-DTQRAIKCYQRAVSLSPDDSV--------------SGEA 97
+ +A L + ++ + A + + S S +
Sbjct: 104 DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTS 163
Query: 98 LCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHH------------KKWSEA 145
+ K L E+++ L + + E
Sbjct: 164 MASFFGIF-KPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQ 222
Query: 146 VQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFL 205
+ + E G+ A + +AIEL + + I
Sbjct: 223 LDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR-VNSYIYMALIMA 281
Query: 206 MLGNFRKGVEQFQLALKISSENVSAHYGLASGLLGLAKQCINLGAFRWGASLLEDACKVA 265
+ + F ALK+ S N S +Y G L + A +D K
Sbjct: 282 DRNDSTEYYNYFDKALKLDSNNSSVYYH-----RGQMNF--ILQNYD-QA--GKDFDKAK 331
Query: 266 EANTRLAG---NMSCIWKLHGDIQLTYAKCFPWAEERQSLEFDVETFSASIVSWKTTCLM 322
E + ++C+
Sbjct: 332 ELDPENIFPYIQLACLAYRENKFD------------------------------------ 355
Query: 323 AAISSKSSYQRALYLAPWQANIYTDIAITSDLIYSLNEAYGHYQSAWHVSEKMALGALLL 382
+ + A P + A ++A Y A + L
Sbjct: 356 DCETL---FSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLA-----------IEL 401
Query: 383 EGDNCQFWVTLGCLSNYNGLKQHALIRG------------LQLDVSLADAWAHIGKLYGE 430
E +V + L L +LD A + ++ +
Sbjct: 402 ENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQ 461
Query: 431 VGEKKLARQAFDSARSIDPSLALPWAGMS 459
+ A F+ + + ++ ++
Sbjct: 462 QEDIDEAITLFEESADLARTMEEKLQAIT 490
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 52.4 bits (126), Expect = 7e-07
Identities = 46/293 (15%), Positives = 79/293 (26%), Gaps = 70/293 (23%)
Query: 15 LEANPDDPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQN-------AVAFRYLGHY- 66
LE D P + +L + + +K E A +L P A A LG +
Sbjct: 33 LELKED-PVFYSNLSA-CYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFA 90
Query: 67 -----YTRFSI-----------------------DTQRAIKCYQRAVSLSPDDSV----- 93
+ S+ + A + + S
Sbjct: 91 DAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKE 150
Query: 94 ---------SGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSE 144
S ++ K L E+++ L + + +
Sbjct: 151 RKDKQENLPSVTSMASFFGI-FKPELTFANYDESNEADKELMNGLSNLYKRSP--ESYDK 207
Query: 145 AVQSLQHAIRGY-------PTSPHLWEALGLAYHRLGMF-------SAAIKSYGRAIELD 190
A +S A R + L E L ++ G+F A + +AIEL
Sbjct: 208 ADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF 267
Query: 191 DTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLASGLLGLAK 243
+ + I + + F ALK+ S N S +Y L
Sbjct: 268 PR-VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQN 319
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 101 bits (254), Expect = 3e-23
Identities = 35/259 (13%), Positives = 70/259 (27%), Gaps = 54/259 (20%)
Query: 4 KGALLLQLEDSLEA----------NPDDPSLHLDLGLHLWENSESKEKAAEHFVIAAKLN 53
L++L + E P +P +G + E A + A L
Sbjct: 62 HIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLE 121
Query: 54 PQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVV 113
A+ GH + S + +A+ Y A L
Sbjct: 122 KTYGPAWIAYGHSFAVES-EHDQAMAAYFTAAQLMKGC---------------------- 158
Query: 114 VCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRL 173
+G A + A+ P P + +G+ +
Sbjct: 159 ------------HLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQN 206
Query: 174 GMFSAAIKSYGRAIELDDTSIFPLLES---------GNIFLMLGNFRKGVEQFQLALKIS 224
G + A K + A+E + G++ L + + ++ + AL +
Sbjct: 207 GEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLI 266
Query: 225 SENVSAHYGLASGLLGLAK 243
+N S + + +
Sbjct: 267 PQNASTYSAIGYIHSLMGN 285
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 93.9 bits (234), Expect = 1e-20
Identities = 33/248 (13%), Positives = 75/248 (30%), Gaps = 20/248 (8%)
Query: 10 QLEDSLEANPDDPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTR 69
+ +S++ ++ + + L + N + K + + + +P +A
Sbjct: 10 VIPESVDGLQENLDVVVSLAERHYYNCDFKM-CYKLTSVVMEKDPFHASCLPVHIGTLVE 68
Query: 70 FSIDTQRAIKCYQRAVSLSPDDSVS----GEALCELLEHGGKESLEVVVC-REASDKSPR 124
+ + V L P + VS G + G ++ +A+
Sbjct: 69 LN-KANELFYLSHKLVDLYPSNPVSWFAVGCYYLMV----GHKNEHARRYLSKATTLEKT 123
Query: 125 AFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYG 184
A+ G+ + +A+ + A + +GL Y A + +
Sbjct: 124 YGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFS 183
Query: 185 RAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSE---------NVSAHYGLA 235
+A+ + F + E G + G ++ + F AL+ L
Sbjct: 184 QALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLG 243
Query: 236 SGLLGLAK 243
L K
Sbjct: 244 HVCRKLKK 251
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 89.7 bits (223), Expect = 3e-19
Identities = 40/211 (18%), Positives = 83/211 (39%), Gaps = 21/211 (9%)
Query: 14 SLEANPDDPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSID 73
+ + G SE ++A + AA+L + Y+G Y + +
Sbjct: 117 ATTLEKTYGPAWIAYGHSFAVESEH-DQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTN-N 174
Query: 74 TQRAIKCYQRAVSLSPDDSVSGEALCEL---LEHGGK---------ESLEVVVCREASDK 121
++ A + + +A+S++P+D + E+ G+ ++LE +
Sbjct: 175 SKLAERFFSQALSIAPEDP---FVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVT 231
Query: 122 SPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIK 181
+ LG++ KK++EA+ + A+ P + + A+G + +G F A+
Sbjct: 232 VDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVD 291
Query: 182 SYGRAIEL--DDTSIFPLLESGNIFLMLGNF 210
+ A+ L DDT +L G+ M
Sbjct: 292 YFHTALGLRRDDTFSVTML--GHCIEMYIGD 320
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 75.0 bits (185), Expect = 2e-14
Identities = 46/273 (16%), Positives = 97/273 (35%), Gaps = 11/273 (4%)
Query: 353 DLIYSLNEAYGHYQSAWHVSEKMALGALLLEGDNCQFWVTLGC----LSNYNGLKQHALI 408
D++ SL E + +Y + + K+ + + + L+ N L +
Sbjct: 23 DVVVSLAERH-YYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSH- 80
Query: 409 RGLQLDVSLADAWAHIGKLYGEVGEK-KLARQAFDSARSIDPSLALPWAGMSADVQASES 467
+ + L S +W +G Y VG K + AR+ A +++ + W A ES
Sbjct: 81 KLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAY-GHSFAVES 139
Query: 468 LVDDAFESCLRAVQILP-LAEFQIGLAKLAKLSGHLSSSQVFGAIQQAIQRGPHYPESHN 526
D A + A Q++ + + L+ + ++ F QA+ P P +
Sbjct: 140 EHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERF--FSQALSIAPEDPFVMH 197
Query: 527 LYGLVCEARSDYQAAVVSYRLARYAISSSSGTVPNSHFQDISINLARSLSRAGNALDAVR 586
G+V +++ A + A I + V ++ + NL + +A+
Sbjct: 198 EVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALD 257
Query: 587 ECESLERQGMLDAEVLQVYAFSLWQLGKYDLAL 619
+A + +G ++ A+
Sbjct: 258 YHRQALVLIPQNASTYSAIGYIHSLMGNFENAV 290
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 68.1 bits (167), Expect = 4e-12
Identities = 27/182 (14%), Positives = 54/182 (29%), Gaps = 19/182 (10%)
Query: 15 LEANPDDPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDT 74
+ L +GL + + + + A F A + P++ +G + +
Sbjct: 152 AQLMKGCHLPMLYIGL-EYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNG-EW 209
Query: 75 QRAIKCYQRAVSLSPDDSVS-------------GEALCELLEHGGKESLEVVVCREASDK 121
+ A K + A+ G +L ++ E+L+ R+A
Sbjct: 210 KTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKY--AEALDY--HRQALVL 265
Query: 122 SPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIK 181
P+ + +GY+ + AV A+ LG S A
Sbjct: 266 IPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSEAYI 325
Query: 182 SY 183
Sbjct: 326 GA 327
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 66.9 bits (164), Expect = 8e-12
Identities = 43/356 (12%), Positives = 94/356 (26%), Gaps = 66/356 (18%)
Query: 114 VCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRL 173
V E+ D L ++ + + + P L
Sbjct: 10 VIPESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVEL 69
Query: 174 GMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGN-FRKGVEQFQLALKISSENVSAH- 231
+ + ++L ++ G +LM+G+ A + A
Sbjct: 70 NKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWI 129
Query: 232 -YGLASGLLGLAKQCINLGAFRWGASLLEDACKVAEANTRLAG---NMSCIWKLHGDIQL 287
YG + + Q + A+ A+ + + L + +L
Sbjct: 130 AYGHSFAVESEHDQAMA--AYF----------TAAQLMKGCHLPMLYIGLEYGLTNNSKL 177
Query: 288 TYAKCFPWAEERQSLEFDVETFSASIVSWKTTCLMAAISSKSSYQRALYLAPWQANIYTD 347
AE + +AL +AP + +
Sbjct: 178 --------AER-------------------------------FFSQALSIAPEDPFVMHE 198
Query: 348 IAITSDLIYSLNEAYGHYQSAWHVSEKMALGALLLEGDNCQFWVTLGCLSNYNGLKQH-- 405
+ + + A + A + + A+G + LG + LK++
Sbjct: 199 VGVVAFQNGEWKTAEKWFLDA--LEKIKAIGNEVTVDKWEPLLNNLGHV--CRKLKKYAE 254
Query: 406 ---ALIRGLQLDVSLADAWAHIGKLYGEVGEKKLARQAFDSARSIDPSLALPWAGM 458
+ L L A ++ IG ++ +G + A F +A + +
Sbjct: 255 ALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTML 310
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 62.3 bits (152), Expect = 3e-10
Identities = 43/266 (16%), Positives = 77/266 (28%), Gaps = 31/266 (11%)
Query: 330 SYQRALYLAPWQANIYTDIAITSDLIYSLNEAYGHYQSAWHVSEKMALGALLLEGDNCQF 389
+ + L P + + ++ NE Y S A LE
Sbjct: 78 LSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSK----------ATTLEKTYGPA 127
Query: 390 WVTLGCLSNYNGLKQHALI---RGLQLDVSLADAWAHIGKLYGEVGEKKLARQAFDSARS 446
W+ G A+ QL +IG YG KLA + F A S
Sbjct: 128 WIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALS 187
Query: 447 IDPSLALPWAGMSADVQASESLVDDAFESCLRAVQILPLAEFQIGLAKLAKLSGHLSSS- 505
I P + V A + L A++ + ++ + K L +L
Sbjct: 188 IAPEDPFVMHEV-GVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVC 246
Query: 506 ----QVFGAI---QQAIQRGPHYPESHNLYGLVCEARSDYQAAVVSYRLARYAISSSSGT 558
+ A+ +QA+ P +++ G + +++ AV + A +
Sbjct: 247 RKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTAL-GL------ 299
Query: 559 VPNSHFQDISINLARSLSRAGNALDA 584
L + +A
Sbjct: 300 --RRDDTFSVTMLGHCIEMYIGDSEA 323
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 54.2 bits (131), Expect = 9e-08
Identities = 10/102 (9%), Positives = 29/102 (28%)
Query: 143 SEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGN 202
+ + ++ G + + +L ++ F K +E D L
Sbjct: 5 KPSETVIPESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIG 64
Query: 203 IFLMLGNFRKGVEQFQLALKISSENVSAHYGLASGLLGLAKQ 244
+ L + + + N + + + L + +
Sbjct: 65 TLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHK 106
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 53.5 bits (129), Expect = 2e-07
Identities = 30/231 (12%), Positives = 63/231 (27%), Gaps = 24/231 (10%)
Query: 398 NYNGLKQHALIRGLQLDVSLADAWAHIGKLYGEVGEKKLARQAFDSARSIDPSLALPWAG 457
+YN + + + D + + + + K+ + DP A
Sbjct: 2 SYNKPSETVIPESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPV 61
Query: 458 MSADVQASESLVDDAFESCLRAVQILPL-AEFQIGLAKLAKLSGHLSSSQVFGAI---QQ 513
+ ++ F + V + P + + GH + A +
Sbjct: 62 HIGTLVELNKA-NELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEH----ARRYLSK 116
Query: 514 AIQRGPHYPESHNLYGLVCEARSDYQAAVVSYRLARYAISSSSGTVPNSHFQDISINLAR 573
A Y + YG S++ A+ +Y A H + +
Sbjct: 117 ATTLEKTYGPAWIAYGHSFAVESEHDQAMAAY---FTAAQLM----KGCH--LPMLYIGL 167
Query: 574 SLSRAGN---ALDAVRECESLERQGMLDAEVLQVYAFSLWQLGKYDLALSM 621
N A + S+ + D V+ +Q G++ A
Sbjct: 168 EYGLTNNSKLAERFFSQALSIAPE---DPFVMHEVGVVAFQNGEWKTAEKW 215
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 105 bits (263), Expect = 4e-23
Identities = 70/552 (12%), Positives = 120/552 (21%), Gaps = 91/552 (16%)
Query: 13 DSLEANPDDPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSI 72
L P + E+ ++ A L P VA
Sbjct: 183 APLNLTPAQVVAIASNNGGK-QALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALE- 240
Query: 73 DTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRL 132
QR + +A L PD V+ + + G + L
Sbjct: 241 TMQRLLPVLCQAHGLPPDQVVA------IASNIG---------------------GKQAL 273
Query: 133 GYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDT 192
+Q + L A P + G L + +A L
Sbjct: 274 ETVQ-------RLLPVLCQAHGLTPDQVVAIASHGGGKQALETVQRLLPVLCQAHGLTPD 326
Query: 193 SIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLASGLLGLAKQCINLGAFR 252
+ + L ++ + A ++ + V A G L
Sbjct: 327 QVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALET--------- 377
Query: 253 WGASLLEDACKVAEANTRLAGNMSCIWKLHGDIQLTYAKCFPWAEERQSLEFDVETFSAS 312
++ V L + +G Q Q+
Sbjct: 378 -----VQRLLPVLCQAHGLTPDQVVAIASNGGKQALETVQRLLPVLCQAHGLT----PDQ 428
Query: 313 IVSWKTTCLMAAISSKS-----SYQRALYLAPWQANIYTDIAITSDLIYSLNEAY---GH 364
+V+ + + L P Q I S +
Sbjct: 429 VVAIASHDGGKQALETVQRLLPVLCQTHGLTPAQV----------VAIASHDGGKQALET 478
Query: 365 YQSAWHVSEKMALGALLLEGDNCQFWVTLGCLSNYNGLKQHAL---IRGLQLDVSLADAW 421
Q V + A L D + Q L + L A
Sbjct: 479 VQQLLPVLCQ----AHGLTPDQVVAIASNIGGKQALATVQRLLPVLCQAHGLTPDQVVAI 534
Query: 422 AHIGKLYGEVGEKKLARQAFDSARSIDPSLALPWAGMSADVQASESLVDDAFESCLRAVQ 481
A G + + A + P + A QA E++ +A
Sbjct: 535 ASNGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETV-QRLLPVLCQAHG 593
Query: 482 ILP-----LAEFQIGLAKLAKLSGHLSSSQVFGAIQQAIQRGPHYPESHNLYGLVCEARS 536
+ +A G L + L QA P + + +A
Sbjct: 594 LTQVQVVAIASNIGGKQALETVQRLLPVL------CQAHGLTPAQVVAIASHDGGKQALE 647
Query: 537 DYQAAVVSYRLA 548
Q + A
Sbjct: 648 TVQRLLPVLCQA 659
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 104 bits (261), Expect = 9e-23
Identities = 74/547 (13%), Positives = 129/547 (23%), Gaps = 71/547 (12%)
Query: 6 ALLLQLEDSLEANPDDPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGH 65
LL L + PD G + E+ ++ A L P VA
Sbjct: 278 RLLPVLCQAHGLTPDQVVAIASHGGGK-QALETVQRLLPVLCQAHGLTPDQVVAIASHDG 336
Query: 66 YYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRA 125
QR + +A L+PD V+ + + + V +A +P
Sbjct: 337 GKQALE-TVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQ 395
Query: 126 FWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGR 185
A G Q + + L A P + L + +
Sbjct: 396 VVAIASNGGKQ-ALETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQ 454
Query: 186 AIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLASGLLGLAKQC 245
L + + L ++ + A ++ + V A G LA
Sbjct: 455 THGLTPAQVVAIASHDGGKQALETVQQLLPVLCQAHGLTPDQVVAIASNIGGKQALAT-- 512
Query: 246 INLGAFRWGASLLEDACKVAEANTRLAGNMSCIWKLHGDIQLTYAKCFPWAEERQSLEFD 305
++ V L + +G + Q+LE
Sbjct: 513 ------------VQRLLPVLCQAHGLTPDQVVAIASNGGGK-------------QALE-- 545
Query: 306 VETFSASIVSWKTTCLMAAISSKSSYQRALYLAPWQANIYTDIAITSDLIYSLNEAYGHY 365
+ + +A L P Q A
Sbjct: 546 --------------TVQRLL---PVLCQAHGLTPDQVVAIASNGGGKQ-------ALETV 581
Query: 366 QSAWHVSEKMALGALLLEGDNCQFWVTLGCLSNYNGLKQHAL---IRGLQLDVSLADAWA 422
Q V + A L + Q L + L + A A
Sbjct: 582 QRLLPVLCQ----AHGLTQVQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPAQVVAIA 637
Query: 423 HIGKLYGEVGEKKLARQAFDSARSIDPSLALPWAGMSADVQASESLVDDAFESCLRAVQI 482
+ + A + P + A QA E++ +A +
Sbjct: 638 SHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETV-QRLLPVLCQAHGL 696
Query: 483 LPLAEFQIGLAKLAKLSGHLSSSQVFGAIQ---QAIQRGPHYPESHNLYGLVCEARSDYQ 539
E + +A L + Q + QA P + G +A Q
Sbjct: 697 TQ--EQVVAIASNNGGKQALETVQ--RLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQ 752
Query: 540 AAVVSYR 546
+
Sbjct: 753 RLLPVLC 759
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 102 bits (256), Expect = 3e-22
Identities = 71/551 (12%), Positives = 124/551 (22%), Gaps = 75/551 (13%)
Query: 6 ALLLQLEDSLEANPDDPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGH 65
LL L + PD + E+ ++ A L P VA G
Sbjct: 244 RLLPVLCQAHGLPPDQVVAIASNIG-GKQALETVQRLLPVLCQAHGLTPDQVVAIASHGG 302
Query: 66 YYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRA 125
QR + +A L+PD V+ + + + V +A +P
Sbjct: 303 GKQALE-TVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQ 361
Query: 126 FWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGR 185
A G + + + L A P + G L + +
Sbjct: 362 VVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNG-GKQALETVQRLLPVLCQ 420
Query: 186 AIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLASGLLGLAKQC 245
A L + + L ++ + ++ V A G L
Sbjct: 421 AHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQTHGLTPAQVVAIASHDGGKQALET-- 478
Query: 246 INLGAFRWGASLLEDACKVAEANTRLAGNMSCIWKLHGDIQLTYAKCFPWAEERQSLEFD 305
++ V L + + +
Sbjct: 479 ------------VQQLLPVLCQAHGLTPDQVVAIASNIGGK-----------------QA 509
Query: 306 VETFSASIVSWKTTCLMAAISSKSSYQRALYLAPWQANIYTDIAITSDLIYSLNEAYGHY 365
+ T + +A L P Q +
Sbjct: 510 LATVQRLL---------------PVLCQAHGLTPDQVVAIASNGGGKQAL-------ETV 547
Query: 366 QSAWHVSEKMALGALLLEGDNCQFWVTLGCLSNYNGLKQHALI---RGLQLDVSLADAWA 422
Q V + A L D + G Q L + L A A
Sbjct: 548 QRLLPVLCQ----AHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQVQVVAIA 603
Query: 423 HIGKLYGEVGEKKLARQAFDSARSIDPSLALPWAGMSADVQASESLVDDAFESCLRAVQI 482
+ + A + P+ + A QA E++ +A +
Sbjct: 604 SNIGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETV-QRLLPVLCQAHGL 662
Query: 483 LP-----LAEFQIGLAKLAKLSGHLSSSQVFGAIQQAIQRGPHYPESHNLYGLVCEARSD 537
P +A G L + L QA + +A
Sbjct: 663 TPDQVVAIASNGGGKQALETVQRLLPVLC------QAHGLTQEQVVAIASNNGGKQALET 716
Query: 538 YQAAVVSYRLA 548
Q + A
Sbjct: 717 VQRLLPVLCQA 727
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 86.2 bits (213), Expect = 4e-17
Identities = 78/635 (12%), Positives = 144/635 (22%), Gaps = 103/635 (16%)
Query: 5 GALLLQLEDSLEANPDDPSLHLDLGLHLWENSESKE----KAAEHFVIAAKLNPQNAVAF 60
G + + + + A P+ + W + + E A E +L+ V
Sbjct: 102 GTVAVTYQHIITALPEATHEDIVGVGKQWSGARALEALLTDAGELRGPPLQLDTGQLVKI 161
Query: 61 RYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASD 120
G ++ R ++L+P V+
Sbjct: 162 AKRGGVTAMEAVHASR-NALTGAPLNLTPAQVVA-------------------------- 194
Query: 121 KSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAI 180
A G L + L A P + L +
Sbjct: 195 ------IASNNGGKQALE--TVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETMQRLL 246
Query: 181 KSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLASGLLG 240
+A L + + + L ++ + A ++ + V A G
Sbjct: 247 PVLCQAHGLPPDQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPDQVVAIAS-----HG 301
Query: 241 LAKQCINLGAFRWGASLLEDACKVAEANTRLA---GNMSCIWKLHGDIQLTYAKCFPWAE 297
KQ L + LL C+ + + +Q
Sbjct: 302 GGKQ--ALETVQ---RLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVL----- 351
Query: 298 ERQSLEFDVETFSASIVSWKTT-----CLMAAISSKSSYQRALYLAPWQANIYTDIAITS 352
Q+ +V+ + L +A L P Q
Sbjct: 352 -CQAHGLT----PDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGKQ 406
Query: 353 DLIYSLNEAYGHYQSAWHVSEKMALGALLLEGDNCQFWVTLGCLSNYNGLKQHAL---IR 409
L Q V + A L D + Q L +
Sbjct: 407 AL--------ETVQRLLPVLCQ----AHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQ 454
Query: 410 GLQLDVSLADAWAHIGKLYGEVGEKKLARQAFDSARSIDPSLALPWAGMSADVQASESLV 469
L + A A + + A + P + A QA ++
Sbjct: 455 THGLTPAQVVAIASHDGGKQALETVQQLLPVLCQAHGLTPDQVVAIASNIGGKQALATV- 513
Query: 470 DDAFESCLRAVQILP-----LAEFQIGLAKLAKLSGHLSSSQVFGAIQQAIQRGPHYPES 524
+A + P +A G L + L QA P +
Sbjct: 514 QRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVL------CQAHGLTPDQVVA 567
Query: 525 HNLYGLVCEARSDYQAAVVSYRLARYAISSSSGTVPNSHFQDISINLARSLSRAGNALDA 584
G +A Q + A + ++ S+ I ++L L
Sbjct: 568 IASNGGGKQALETVQRLLPVLCQA-HGLTQVQVVAIASN-----IGGKQALETVQRLLPV 621
Query: 585 VRECESLERQGMLDAEVLQVYAFSLWQLGKYDLAL 619
+ + L + + L L
Sbjct: 622 LCQAHGLTPA---QVVAIASHDGGKQALETVQRLL 653
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 84.7 bits (209), Expect = 1e-16
Identities = 69/547 (12%), Positives = 125/547 (22%), Gaps = 72/547 (13%)
Query: 7 LLLQLEDSLEANPDDPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHY 66
LL L + PD E+ ++ L P VA
Sbjct: 414 LLPVLCQAHGLTPDQVVAIASHDGGKQA-LETVQRLLPVLCQTHGLTPAQVVAIASHDGG 472
Query: 67 YTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAF 126
+ Q+ + +A L+PD V+ + + + V +A +P
Sbjct: 473 K-QALETVQQLLPVLCQAHGLTPDQVVAIASNIGGKQALATVQRLLPVLCQAHGLTPDQV 531
Query: 127 WAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRA 186
A G + + + L A P + G L + +A
Sbjct: 532 VAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQA 591
Query: 187 IELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLASGLLGLAKQCI 246
L + + + L ++ + A ++ V A G
Sbjct: 592 HGLTQVQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQ------- 644
Query: 247 NLGAFRWGASLLEDACKVAEANTRLAGNMSCIWKLHGDIQLTYAKCFPWAEERQSLEFDV 306
L + LL C+ +G + +
Sbjct: 645 ALETVQ---RLLPVLCQAHGLTPDQV----VAIASNGGGKQ-----------------AL 680
Query: 307 ETFSASIVSWKTTCLMAAISSKSSYQRALYLAPWQANIYTDIAITSDLIYSLNEAY---G 363
ET + +A L Q S N
Sbjct: 681 ETVQRLLP---------------VLCQAHGLTQEQVVAI----------ASNNGGKQALE 715
Query: 364 HYQSAWHVSEKMALGALLLEGDNCQFWVTLGCLSNYNGLKQHALI---RGLQLDVSLADA 420
Q V + A L D + G Q L + L + A
Sbjct: 716 TVQRLLPVLCQ----AHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPAQVVA 771
Query: 421 WAHIGKLYGEVGEKKLARQAFDSARSIDPSLALPWAGMSADVQASESLVDDAFESCLRAV 480
A + + + + + A QA E+ V +A
Sbjct: 772 IASNIGGKQALETVQRLLPVLCQDHGLTLAQVVAIASNIGGKQALET-VQRLLPVLCQAH 830
Query: 481 QILPLAEFQIGLAKLAKLSGHLSSSQVFGAIQ-QAIQRGPHYPESHNLYGLVCEARSDYQ 539
+ + + +A L + Q + Q P + +A Q
Sbjct: 831 GLTQ--DQVVAIASNIGGKQALETVQRLLPVLCQDHGLTPDQVVAIASNIGGKQALETVQ 888
Query: 540 AAVVSYR 546
+
Sbjct: 889 RLLPVLC 895
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 74.7 bits (183), Expect = 1e-13
Identities = 86/547 (15%), Positives = 139/547 (25%), Gaps = 68/547 (12%)
Query: 6 ALLLQLEDSLEANPDDPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGH 65
LL L + PD G + E+ ++ A L VA
Sbjct: 549 RLLPVLCQAHGLTPDQVVAIASNGGGK-QALETVQRLLPVLCQAHGLTQVQVVAIASNIG 607
Query: 66 YYTRFSIDTQRAIKCYQRAVSLSPDDSVS----GEALCELLEHGGKESLEVVVCREASDK 121
QR + +A L+P V+ L + L V +A
Sbjct: 608 GKQALE-TVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETV--QRLLPV--LCQAHGL 662
Query: 122 SPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIK 181
+P A G + + + L A + L +
Sbjct: 663 TPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQEQVVAIASNNGGKQALETVQRLLP 722
Query: 182 SYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLASGLLGL 241
+A L + + +G L ++ + A ++ V A G L
Sbjct: 723 VLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPAQVVAIASNIGGKQAL 782
Query: 242 AKQCINLGAFRWGASLLEDACKVAEANTRLAGNMSCIWKLHGDIQL--TYAKCFPWAEER 299
LL C+ + I G Q T + P +
Sbjct: 783 ETV----------QRLLPVLCQDHGLTL---AQVVAIASNIGGKQALETVQRLLPVLCQA 829
Query: 300 QSLEFDVETFSASIVSWKTTCLMAAISSKSSYQRALYLAPWQANIYT-DIAITSDLIYSL 358
L T + AI+S ++AL + D +T D + ++
Sbjct: 830 HGL---------------TQDQVVAIASNIGGKQALETVQRLLPVLCQDHGLTPDQVVAI 874
Query: 359 N------EAYGHYQSAWHVSEKMALGALLLEGDNCQFWVTLGC---LSNYNGLKQHALIR 409
+A Q V + L D + G L L L +
Sbjct: 875 ASNIGGKQALETVQRLLPVLCQ----DHGLTLDQVVAIASNGGKQALETVQRLLP-VLCQ 929
Query: 410 GLQLDVSLADAWAHIGKLYGEVGEKKLARQAFDSARSIDPSLALPWAGMSADVQASESLV 469
L A A + + + P+ + A QA ES+V
Sbjct: 930 DHGLTPDQVVAIASNSGGKQALETVQRLLPVLCQDHGLTPNQVVAIASNGGK-QALESIV 988
Query: 470 DDAFESCLRAVQILPLAEFQIGLAKLAKLSGHLSSSQVFGAIQQAIQRGPHYPESHNLYG 529
A+ L L LA L G A+ + PH PE
Sbjct: 989 -AQLSRPDPALAALTNDH----LVALACLGGR-------PAMDAVKKGLPHAPELIRRVN 1036
Query: 530 LVCEARS 536
R+
Sbjct: 1037 RRIGERT 1043
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243 | Back alignment and structure |
|---|
Score = 98.0 bits (245), Expect = 8e-23
Identities = 41/231 (17%), Positives = 79/231 (34%), Gaps = 12/231 (5%)
Query: 12 EDSLEANPDDPSLHLDLGLHLWENSESK---EKAAEHFVIAAKLNPQNAVAFRYLGHYYT 68
S P + G EKAAE F A + N ++A+ + + +
Sbjct: 9 HHSSGLVPRGSHMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLS 68
Query: 69 RFSIDTQRAIKCYQRAVSLSPDDSVS----GEALCELLEHGGKESLEVVVCREASDKSPR 124
+ + +RA+ Y +A+ L + + G + KE+ ++ +A
Sbjct: 69 SVN-ELERALAFYDKALELDSSAATAYYGAGNVYVVKEMY--KEAKDM--FEKALRAGME 123
Query: 125 AFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYG 184
F LG + + ++ A+ LQ A+ G+ GM A+ +
Sbjct: 124 NGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFA 183
Query: 185 RAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLA 235
E D +G + N K +E A+ I +++ A +
Sbjct: 184 AVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKK 234
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243 | Back alignment and structure |
|---|
Score = 77.9 bits (193), Expect = 5e-16
Identities = 31/205 (15%), Positives = 67/205 (32%), Gaps = 31/205 (15%)
Query: 4 KGALLLQLEDSLEA-------NPDDPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQN 56
+G+ E + EA N +D +++ L +E + A + A +L+
Sbjct: 32 RGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELER-ALAFYDKALELDSSA 90
Query: 57 A-------VAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVS----GEALCELLEHG 105
A + Y + A +++A+ ++ G L +L +
Sbjct: 91 ATAYYGAGNVYVVKEMY--------KEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQP- 141
Query: 106 GKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEA 165
K +L + A + + A + G + EA+ P +
Sbjct: 142 -KLALPY--LQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYN 198
Query: 166 LGLAYHRLGMFSAAIKSYGRAIELD 190
G+ Y A++ +AI++
Sbjct: 199 AGVTYAYKENREKALEMLDKAIDIQ 223
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243 | Back alignment and structure |
|---|
Score = 66.4 bits (163), Expect = 5e-12
Identities = 25/132 (18%), Positives = 52/132 (39%), Gaps = 4/132 (3%)
Query: 116 REASDKSPRAFWAFRRLGYLQLHH----KKWSEAVQSLQHAIRGYPTSPHLWEALGLAYH 171
+S PR G Q+ + +A ++ AI +
Sbjct: 9 HHSSGLVPRGSHMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLS 68
Query: 172 RLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAH 231
+ A+ Y +A+ELD ++ +GN++++ +++ + F+ AL+ EN
Sbjct: 69 SVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLF 128
Query: 232 YGLASGLLGLAK 243
Y L + L+ L +
Sbjct: 129 YMLGTVLVKLEQ 140
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243 | Back alignment and structure |
|---|
Score = 62.1 bits (152), Expect = 1e-10
Identities = 16/104 (15%), Positives = 37/104 (35%), Gaps = 4/104 (3%)
Query: 144 EAVQSLQHAIRGYPTSPHLW----EALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLE 199
+ H+ P H+ G + A +++ +AIE + P +
Sbjct: 3 SSHHHHHHSSGLVPRGSHMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYIN 62
Query: 200 SGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLASGLLGLAK 243
N+ + + + + AL++ S +A+YG + +
Sbjct: 63 FANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEM 106
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243 | Back alignment and structure |
|---|
Score = 56.4 bits (137), Expect = 1e-08
Identities = 42/232 (18%), Positives = 79/232 (34%), Gaps = 24/232 (10%)
Query: 326 SSKSSYQRALYLAPWQANIYTDIAITSDLIYSLNEAYGHYQSAWHVSEKMALGALLLEGD 385
SS + + L P +++ + +G Y+ A K A+ +
Sbjct: 3 SSHHHHHHSSGLVPRGSHMASMTG---GQQMGRGSEFGDYEKAAEAFTK----AIEENKE 55
Query: 386 NCQFWVTLGCLSNYNGLKQHALI---RGLQLDVSLADAWAHIGKLYGEVGEKKLARQAFD 442
+ ++ L + + AL + L+LD S A A+ G +Y K A+ F+
Sbjct: 56 DAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFE 115
Query: 443 SARSIDPSLALPWAGMSADVQASESLVDDAFESCLRAVQILP---LAEFQIGLAKLAKLS 499
A + + V A RAV++ A FQ G+ LA
Sbjct: 116 KALRAGMENGDLFYML-GTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMC-LANE- 172
Query: 500 GHLSSSQVFGAI---QQAIQRGPHYPESHNLYGLVCEARSDYQAAVVSYRLA 548
G L A+ ++ P + ++ G+ + + + A+ A
Sbjct: 173 GMLD-----EALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKA 219
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243 | Back alignment and structure |
|---|
Score = 41.7 bits (99), Expect = 7e-04
Identities = 32/218 (14%), Positives = 70/218 (32%), Gaps = 28/218 (12%)
Query: 330 SYQRALYLAPWQANIYTDIAITSDLIYSLNEAYGHYQSAWHVSEKMALGALLLEGDNCQF 389
++ +A+ A Y + A + L A Y A L L+
Sbjct: 45 AFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKA-----------LELDSSAATA 93
Query: 390 WVTLGCLSNYNGLKQHALI---RGLQLDVSLADAWAHIGKLYGEVGEKKLARQAFDSARS 446
+ G + + + A + L+ + D + +G + ++ + KLA A
Sbjct: 94 YYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVE 153
Query: 447 IDPSLALPWAGMSADVQASESLVDDAFESCLRAVQILP---LAEFQIGLAKLAKLSGHLS 503
++ + A+E ++D+A + P A + G+ A +
Sbjct: 154 LNENDTEARFQF-GMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVT-YAYK-ENRE 210
Query: 504 SSQVFGAI---QQAIQRGPHYPESHNLYGLVCEARSDY 538
A+ +AI P + + + L+ +
Sbjct: 211 -----KALEMLDKAIDIQPDHMLALHAKKLLGHHHHHH 243
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252 | Back alignment and structure |
|---|
Score = 97.3 bits (243), Expect = 1e-22
Identities = 34/225 (15%), Positives = 78/225 (34%), Gaps = 46/225 (20%)
Query: 14 SLEANPDDPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSID 73
+ + + ++ LGL + + E+A A +++P +A A L + +
Sbjct: 29 TDKGRDEARDAYIQLGLGYLQRGNT-EQAKVPLRKALEIDPSSADAHAALAVVFQTEM-E 86
Query: 74 TQRAIKCYQRAVSLSPDDSVS----GEALCELLEHGGKESLEVVVCREASDKSPRAFWAF 129
+ A + Y++A++ ++ G L E
Sbjct: 87 PKLADEEYRKALASDSRNARVLNNYGGFLYEQ---------------------------- 118
Query: 130 RRLGYLQLHHKKWSEAVQSLQHAIRG--YPTSPHLWEALGLAYHRLGMFSAAIKSYGRAI 187
K++ EA Q L A + YP ++E LGL ++ + A + + +++
Sbjct: 119 ----------KRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSL 168
Query: 188 ELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHY 232
L+ LE ++ + + + L + +N +
Sbjct: 169 RLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLL 213
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252 | Back alignment and structure |
|---|
Score = 73.8 bits (182), Expect = 1e-14
Identities = 30/240 (12%), Positives = 68/240 (28%), Gaps = 52/240 (21%)
Query: 18 NPDDPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRA 77
H GL ++ + K + A+ LG Y + +T++A
Sbjct: 2 GSSHHHHHHSSGLV----PRGSHMGDQNPLKTDKGRDEARDAYIQLGLGYLQRG-NTEQA 56
Query: 78 IKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQL 137
++A+ + P A A L +
Sbjct: 57 KVPLRKALEIDPSS-------------------------------ADAHAA---LAVVFQ 82
Query: 138 HHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPL 197
+ A + + A+ + + G + + A + A + +++P
Sbjct: 83 TEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQ---DTLYPE 139
Query: 198 LES-----GNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLAS-----GLLGLAKQCIN 247
G + L + + E F+ +L+++ S +A A+Q +
Sbjct: 140 RSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYD 199
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252 | Back alignment and structure |
|---|
Score = 59.2 bits (144), Expect = 1e-09
Identities = 27/189 (14%), Positives = 53/189 (28%), Gaps = 18/189 (9%)
Query: 11 LEDSLEANPDDPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYT-- 68
L +LE +P H L + E + A E + A + +NA G +
Sbjct: 60 LRKALEIDPSSADAHAALAVVFQTEME-PKLADEEYRKALASDSRNARVLNNYGGFLYEQ 118
Query: 69 -RFSIDTQRAIKCYQRAV--SLSPDDSVS----GEALCELLEHGGKESLEVVVCREASDK 121
R+ + A + A +L P+ S G ++ K + ++
Sbjct: 119 KRY----EEAYQRLLEASQDTLYPERSRVFENLGLVSLQM----KKPAQAKEYFEKSLRL 170
Query: 122 SPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIK 181
+ + L +++ A Q +G + A
Sbjct: 171 NRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAAS 230
Query: 182 SYGRAIELD 190
+ L
Sbjct: 231 YGLQLKRLY 239
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252 | Back alignment and structure |
|---|
Score = 55.0 bits (133), Expect = 3e-08
Identities = 41/248 (16%), Positives = 74/248 (29%), Gaps = 35/248 (14%)
Query: 393 LGCLSNYNGLKQHALIRGLQLDVSLADAWAHIGKLYGEVGEKKLARQAFDSARSIDPSLA 452
G + + + ++ + DA+ +G Y + G + A+ A IDPS A
Sbjct: 12 SGLVPRGSHMGDQNPLKTDKGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSA 71
Query: 453 LPWAGMSADVQASESLVDDAFESCLRAVQILP--------LAEFQIGLAKLAKLSGHLSS 504
A + A V +E A E +A+ F + +
Sbjct: 72 DAHAAL-AVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEE------- 123
Query: 505 SQVFGAIQ---QAIQRG--PHYPESHNLYGLVCEARSDYQAAVVSYRLARYAISSSSGTV 559
A Q +A Q P GLV A + + +
Sbjct: 124 -----AYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKS-LRL------- 170
Query: 560 PNSHFQDISINLARSLSRAGNALDAVRECESLERQGMLDAEVLQVYAFSLWQLGKYDLAL 619
N + +++ +A L + + A + + + G +A L + D A
Sbjct: 171 -NRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAA 229
Query: 620 SMARNLAS 627
S L
Sbjct: 230 SYGLQLKR 237
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252 | Back alignment and structure |
|---|
Score = 48.8 bits (117), Expect = 4e-06
Identities = 26/227 (11%), Positives = 59/227 (25%), Gaps = 20/227 (8%)
Query: 329 SSYQRALYLAPWQANIYTDIAITSDLIYSLNEAYGHYQSAWHVSEKMALGALLLEGDNCQ 388
+ + + Y + + + +A + A L ++ +
Sbjct: 24 QNPLKTDKGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKA-----------LEIDPSSAD 72
Query: 389 FWVTLGCLSNYNGLKQHALI---RGLQLDVSLADAWAHIGKLYGEVGEKKLARQAFDSA- 444
L + + A + L D A + G E + A Q A
Sbjct: 73 AHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEAS 132
Query: 445 -RSIDPSLALPWAGMSADVQASESLVDDAFESCLRAVQILP-LAEFQIGLAKLAKLSGHL 502
++ P + + + V A E +++++ + +A L
Sbjct: 133 QDTLYPERSRVFENL-GLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREY 191
Query: 503 SSSQVFGAIQQAIQRGPHYPESHNLYGLVCEARSDYQAAVVSYRLAR 549
++ Q G S L + + D A +
Sbjct: 192 VPAR--QYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLK 236
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252 | Back alignment and structure |
|---|
Score = 41.9 bits (99), Expect = 6e-04
Identities = 22/87 (25%), Positives = 36/87 (41%), Gaps = 5/87 (5%)
Query: 11 LEDSLEANPDDPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRF 70
E SL N + PS+ L++ L++ E A +++ + A+ QNA + LG +
Sbjct: 164 FEKSLRLNRNQPSVALEMADLLYKEREYVP-ARQYYDLFAQGGGQNARSL-LLGIRLAKV 221
Query: 71 SIDTQRAIKCYQRAVSLSPDDSVSGEA 97
D A + L P S E
Sbjct: 222 FEDRDTAASYGLQLKRLYPG---SLEY 245
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327 | Back alignment and structure |
|---|
Score = 94.3 bits (235), Expect = 7e-21
Identities = 41/246 (16%), Positives = 77/246 (31%), Gaps = 32/246 (13%)
Query: 8 LLQLEDSLEANPDDPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYY 67
L E +A P+ LGL EN E A A L+P++ L +
Sbjct: 41 ALAFEAVCQAAPEREEAWRSLGLTQAEN-EKDGLAIIALNHARMLDPKDIAVHAALAVSH 99
Query: 68 TRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFW 127
T + A+ + + P +
Sbjct: 100 TNEH-NANAALASLRAWLLSQPQYE---QL----------------GSVNLQADVDIDDL 139
Query: 128 AFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAI 187
+ + ++ E L A+ P L +LG+ Y+ + +A + RA+
Sbjct: 140 NVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAV 199
Query: 188 EL--DDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLASGLLGLAKQC 245
EL DD ++ L G ++ ++ + AL I+ V Y + ++
Sbjct: 200 ELRPDDAQLWNKL--GATLANGNRPQEALDAYNRALDINPGYVRVMYN-----MAVS--Y 250
Query: 246 INLGAF 251
N+ +
Sbjct: 251 SNMSQY 256
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327 | Back alignment and structure |
|---|
Score = 72.7 bits (179), Expect = 1e-13
Identities = 26/194 (13%), Positives = 52/194 (26%), Gaps = 57/194 (29%)
Query: 57 AVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCR 116
++ L + A ++ +P+
Sbjct: 28 GLSMLKLANL--------AEAALAFEAVCQAAPERE------------------------ 55
Query: 117 EASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMF 176
A+R LG Q ++K A+ +L HA P + AL +++
Sbjct: 56 ----------EAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNA 105
Query: 177 SAAIKSYGRAIELD---------------DTSIFPLLESGNIFLMLGNFRKGVEQFQLAL 221
+AA+ S + D + F +R+ AL
Sbjct: 106 NAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAAL 165
Query: 222 KISSENVSAHYGLA 235
+++ + H L
Sbjct: 166 EMNPNDAQLHASLG 179
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327 | Back alignment and structure |
|---|
Score = 72.7 bits (179), Expect = 1e-13
Identities = 39/272 (14%), Positives = 77/272 (28%), Gaps = 41/272 (15%)
Query: 4 KGALLLQLEDSLEA----------NPDDPSLHLDLGLHLWENSESKEKAAEHFVIAAKLN 53
G + E A +P D ++H L + + A
Sbjct: 61 LGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANA-ALASLRAWLLSQ 119
Query: 54 PQNAVAFRYLGHYYTRFSIDT--------------QRAIKCYQRAVSLSPDDSVS----G 95
PQ + A+ ++P+D+ G
Sbjct: 120 PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLG 179
Query: 96 EALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRG 155
+ + R A + P + +LG + + EA+ + A+
Sbjct: 180 VLYNLSNNY--DSAAAN--LRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDI 235
Query: 156 YPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLE-----SGNIFLMLGNF 210
P + + ++Y + + A K RAI + P E + +++
Sbjct: 236 NPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRML 295
Query: 211 RKGVEQFQLALKISSENVSA---HYGLASGLL 239
+ + L ++NV +GL S LL
Sbjct: 296 LNVMNRPDLVELTYAQNVEPFAKEFGLQSMLL 327
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327 | Back alignment and structure |
|---|
Score = 58.8 bits (143), Expect = 4e-09
Identities = 41/325 (12%), Positives = 80/325 (24%), Gaps = 53/325 (16%)
Query: 144 EAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNI 203
+ GL+ +L + A ++ + G
Sbjct: 5 QNNTDYPFEANNPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLT 64
Query: 204 FLMLGNFRKGVEQFQLALKISSENVSAHYGLASGLLGLAKQCINLGAFRWGASLLEDACK 263
+ A + ++++ H LA N A
Sbjct: 65 QAENEKDGLAIIALNHARMLDPKDIAVHAALAVSH-------TNEH-------NANAALA 110
Query: 264 VAEANTRLAGNMSCIWKLHGDIQL--TYAKCFPWAEERQSLEFDVETFSASIVSWKTTCL 321
A W + Y + + D+ S
Sbjct: 111 SLRA-----------W-----LLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEY 154
Query: 322 MAAISSKSSYQRALYLAPWQANIYTDIAITSDLIYSLNEAYGHYQSAWHVSEKMA----- 376
+ AL + P A ++ + + +L + + A + + A + A
Sbjct: 155 RECRTL---LHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNK 211
Query: 377 LGALLLEGDNCQFWVTLGCLSNYNGLKQHALIRGLQLDVSLADAWAHIGKLYGEVGEKKL 436
LGA L G+ Q L YN R L ++ ++ Y + + L
Sbjct: 212 LGATLANGNRPQ-----EALDAYN--------RALDINPGYVRVMYNMAVSYSNMSQYDL 258
Query: 437 ARQAFDSARSIDPSLALPWAGMSAD 461
A + A + P S +
Sbjct: 259 AAKQLVRAIYMQVGGTTPTGEASRE 283
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327 | Back alignment and structure |
|---|
Score = 55.8 bits (135), Expect = 3e-08
Identities = 30/176 (17%), Positives = 56/176 (31%), Gaps = 18/176 (10%)
Query: 390 WVTLGCLSNYNGLKQHALI---RGLQLDVSLADAWAHIGKLYGEVGEKKLARQAFDSARS 446
+ G A + Q +AW +G E + LA A + AR
Sbjct: 24 PMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARM 83
Query: 447 IDPSLALPWAGMSADVQASESLVDDAFESCLRAVQILP----------LAEFQIGLAKLA 496
+DP A + A +E + A S + P A+ I +
Sbjct: 84 LDPKDIAVHAAL-AVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQ 142
Query: 497 KLSGHLSSSQVF-GAI---QQAIQRGPHYPESHNLYGLVCEARSDYQAAVVSYRLA 548
++ + A++ P+ + H G++ ++Y +A + R A
Sbjct: 143 SEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRA 198
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327 | Back alignment and structure |
|---|
Score = 46.9 bits (112), Expect = 3e-05
Identities = 29/236 (12%), Positives = 52/236 (22%), Gaps = 54/236 (22%)
Query: 363 GHYQSAWHVSEKMALGALLLEGDNCQFWVTLGCLSNYNGLKQHALI---RGLQLDVSLAD 419
+ A E + + W +LG N A+I LD
Sbjct: 35 ANLAEAALAFEA----VCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIA 90
Query: 420 AWAHIGKLYGEVGEKKLARQAFDSARSIDPSLALPWAGMSADVQASESLV---------- 469
A + + A + + P + + L
Sbjct: 91 VHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAA 150
Query: 470 ----DDAFESCLRAVQILP-LAEFQIGLAKLAKLSGHLS--------------------- 503
+ A+++ P A+ L L LS +
Sbjct: 151 PNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWN 210
Query: 504 --------SSQVFGAI---QQAIQRGPHYPESHNLYGLVCEARSDYQAAVVSYRLA 548
++ A+ +A+ P Y + S Y A A
Sbjct: 211 KLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRA 266
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225 | Back alignment and structure |
|---|
Score = 90.8 bits (226), Expect = 1e-20
Identities = 35/243 (14%), Positives = 68/243 (27%), Gaps = 48/243 (19%)
Query: 16 EANPDDPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQ 75
E ++ L + + ++ A A K +P+N +A+ Y
Sbjct: 2 EKANQVSNIKTQLAMEYMRGQDYRQ-ATASIEDALKSDPKNELAWLVRAEIYQYLK-VND 59
Query: 76 RAIKCYQRAVSLSPDDSVS----GEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRR 131
+A + +++A+S+ PD + G LC L
Sbjct: 60 KAQESFRQALSIKPDSAEINNNYGWFLCGRL----------------------------- 90
Query: 132 LGYLQLHHKKWSEAVQSLQHAIRG--YPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIEL 189
+ +E++ A+ YPT G+ + G F A R++
Sbjct: 91 --------NRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAA 142
Query: 190 DDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLA---SGLLGLAKQCI 246
E ++ G F+ + L + LG A+
Sbjct: 143 QPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAY 202
Query: 247 NLG 249
Sbjct: 203 EYE 205
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225 | Back alignment and structure |
|---|
Score = 62.7 bits (153), Expect = 6e-11
Identities = 20/162 (12%), Positives = 46/162 (28%), Gaps = 37/162 (22%)
Query: 119 SDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSA 178
++K+ + +L + + + +A S++ A++ P + W Y L +
Sbjct: 1 AEKANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDK 60
Query: 179 AIKSYGRAIELD--------------------------------DTSIFPLLES-----G 201
A +S+ +A+ + +P G
Sbjct: 61 AQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKG 120
Query: 202 NIFLMLGNFRKGVEQFQLALKISSENVSAHYGLASGLLGLAK 243
G F + +L + A LA + +
Sbjct: 121 ICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQ 162
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225 | Back alignment and structure |
|---|
Score = 60.0 bits (146), Expect = 5e-10
Identities = 28/186 (15%), Positives = 62/186 (33%), Gaps = 13/186 (6%)
Query: 11 LEDSLEANPDDPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRF 70
+ED+L+++P + L + +KA E F A + P +A G +
Sbjct: 31 IEDALKSDPKNELAWLVRAEIYQYLKVN-DKAQESFRQALSIKPDSAEINNNYGWFLCGR 89
Query: 71 SIDTQRAIKCYQRAVSLS--PDDSVS----GEALCELLEHGGKESLEVVVCREASDKSPR 124
++ + +A++ P ++ G + G+ L + + P+
Sbjct: 90 LNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQ----GQFGLAEAYLKRSLAAQPQ 145
Query: 125 AFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYG 184
AF+ L ++ + +A + + L L + A +Y
Sbjct: 146 FPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQA--DDLLLGWKIAKALGNAQAAYE 203
Query: 185 RAIELD 190
+L
Sbjct: 204 YEAQLQ 209
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225 | Back alignment and structure |
|---|
Score = 49.6 bits (119), Expect = 2e-06
Identities = 21/144 (14%), Positives = 48/144 (33%), Gaps = 9/144 (6%)
Query: 411 LQLDVSLADAWAHIGKLYGEVGEKKLARQAFDSARSIDPSLALPWAGMSADVQASESLVD 470
L+ D AW ++Y + A+++F A SI P A + +
Sbjct: 35 LKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPA 94
Query: 471 DAFESCLRAVQIL-----PLAEFQIGLAKLAKLSGHLSSSQVFGAIQQAIQRGPHYPESH 525
++ +A+ +A G+ AK G ++ +++++ P +P +
Sbjct: 95 ESMAYFDKALADPTYPTPYIANLNKGIC-SAKQ-GQFGLAE--AYLKRSLAAQPQFPPAF 150
Query: 526 NLYGLVCEARSDYQAAVVSYRLAR 549
A ++ +
Sbjct: 151 KELARTKMLAGQLGDADYYFKKYQ 174
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225 | Back alignment and structure |
|---|
Score = 46.9 bits (112), Expect = 1e-05
Identities = 40/213 (18%), Positives = 67/213 (31%), Gaps = 17/213 (7%)
Query: 418 ADAWAHIGKLYGEVGEKKLARQAFDSARSIDPSLALPWAGMSADVQASESLVDDAFESCL 477
++ + Y + + A + + A DP L W A++ + D A ES
Sbjct: 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVR-AEIYQYLKVNDKAQESFR 66
Query: 478 RAVQILP-LAEFQIGLAK-LAKLSGHLSSSQVFGAIQQAIQRG--PHYPESHNLYGLVCE 533
+A+ I P AE L + S +A+ P ++ G+
Sbjct: 67 QALSIKPDSAEINNNYGWFLCGRLNRPAESMA--YFDKALADPTYPTPYIANLNKGICSA 124
Query: 534 ARSDYQAAVVSYRLARYAISSSSGTVPNSHFQDISINLARSLSRAGNALDAVRECES-LE 592
+ + A + + A F LAR+ AG DA +
Sbjct: 125 KQGQFGLAEAYLKRS-LAA--------QPQFPPAFKELARTKMLAGQLGDADYYFKKYQS 175
Query: 593 RQGMLDAEVLQVYAFSLWQLGKYDLALSMARNL 625
R +L A+ L + LG A L
Sbjct: 176 RVEVLQADDLLLGWKIAKALGNAQAAYEYEAQL 208
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142 | Back alignment and structure |
|---|
Score = 86.7 bits (215), Expect = 4e-20
Identities = 21/112 (18%), Positives = 35/112 (31%)
Query: 116 REASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGM 175
S LG+ Q KW +A + Q + LG LG+
Sbjct: 8 AMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGL 67
Query: 176 FSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSEN 227
+ A++SY +D + L LG+ F A +++
Sbjct: 68 YEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQ 119
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142 | Back alignment and structure |
|---|
Score = 58.2 bits (141), Expect = 5e-10
Identities = 19/163 (11%), Positives = 35/163 (21%), Gaps = 36/163 (22%)
Query: 11 LEDSLEANPDDPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRF 70
L + D LG + ++ + + A + F L+ +A F LG
Sbjct: 7 LAMLRGLSEDTLEQLYALGFNQYQAGKW-DDAQKIFQALCMLDHYDARYFLGLGACRQSL 65
Query: 71 SIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFR 130
++A++ Y + ++
Sbjct: 66 G-LYEQALQSYSYGALMDINEP----------------------------------RFPF 90
Query: 131 RLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRL 173
L A A P A L
Sbjct: 91 HAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARAGAML 133
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142 | Back alignment and structure |
|---|
Score = 57.8 bits (140), Expect = 6e-10
Identities = 16/94 (17%), Positives = 29/94 (30%)
Query: 148 SLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLML 207
+L + ALG ++ G + A K + LD L G L
Sbjct: 6 TLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSL 65
Query: 208 GNFRKGVEQFQLALKISSENVSAHYGLASGLLGL 241
G + + ++ + + + A L L
Sbjct: 66 GLYEQALQSYSYGALMDINEPRFPFHAAECHLQL 99
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142 | Back alignment and structure |
|---|
Score = 46.3 bits (110), Expect = 5e-06
Identities = 16/126 (12%), Positives = 44/126 (34%), Gaps = 18/126 (14%)
Query: 330 SYQRALYLAPWQANIYTDIAITSDLIYSLNEAYGHYQSAWHVSEKMALGALLLEGDNCQF 389
+ L+ + ++A +Q+ +L+ + ++
Sbjct: 6 TLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQAL-----------CMLDHYDARY 54
Query: 390 WVTLGCLSNYNGLKQH-----ALIRGLQLDVSLADAWAHIGKLYGEVGEKKLARQAFDSA 444
++ LG + L + + G +D++ H + + ++G+ A F SA
Sbjct: 55 FLGLG--ACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSA 112
Query: 445 RSIDPS 450
R++ +
Sbjct: 113 RALAAA 118
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275 | Back alignment and structure |
|---|
Score = 90.1 bits (224), Expect = 8e-20
Identities = 39/240 (16%), Positives = 66/240 (27%), Gaps = 14/240 (5%)
Query: 11 LEDSLEANPDDPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRF 70
L + + L + G+ A F A + P F YLG Y T+
Sbjct: 32 LASRALTDDERAQLLYERGVLYDSLGLRAL-ARNDFSQALAIRPDMPEVFNYLGIYLTQA 90
Query: 71 SIDTQRAIKCYQRAVSLSPDDSVS----GEALCELLEHGGKESLEVVVCREASDKSPRAF 126
+ A + + + L P + + G AL G++ L P
Sbjct: 91 G-NFDAAYEAFDSVLELDPTYNYAHLNRGIALYYG----GRDKLAQDDLLAFYQDDPNDP 145
Query: 127 WAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLA---YHRLGMFSAAIKSY 183
+ L L +A + L+ W + +
Sbjct: 146 FRSLWLY-LAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADA 204
Query: 184 GRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLASGLLGLAK 243
L + G +L LG+ F+LA+ + N H L L +
Sbjct: 205 TDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHRYALLELSLLGQ 264
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275 | Back alignment and structure |
|---|
Score = 85.1 bits (211), Expect = 4e-18
Identities = 40/240 (16%), Positives = 71/240 (29%), Gaps = 38/240 (15%)
Query: 3 EKGALLLQLEDSLEA----------NPDDPSLHLDLGLHLWENSESKEKAAEHFVIAAKL 52
E+G L L A PD P + LG++L + + A E F +L
Sbjct: 48 ERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGN-FDAAYEAFDSVLEL 106
Query: 53 NPQNA-------VAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVS----GEALCEL 101
+P +A Y G + A P+D A +L
Sbjct: 107 DPTYNYAHLNRGIALYYGGRD--------KLAQDDLLAFYQDDPNDPFRSLWLYLAEQKL 158
Query: 102 LEHGGKESLEVVVCREASDKSPRAFWAFRRLGYL--QLHHK-KWSEAVQSLQHAIRGYPT 158
E KE L+ + +KS + W + + + + +
Sbjct: 159 DEKQAKEVLK-----QHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEH 213
Query: 159 SPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQ 218
LG Y LG +A + A+ + + + +LG + + +
Sbjct: 214 LSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHRYALLELSLLGQDQDDLAESD 273
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275 | Back alignment and structure |
|---|
Score = 69.3 bits (170), Expect = 7e-13
Identities = 24/156 (15%), Positives = 45/156 (28%)
Query: 89 PDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQS 148
V L L+ + + + G L + A
Sbjct: 6 RKSEVLAVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARND 65
Query: 149 LQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLG 208
A+ P P ++ LG+ + G F AA +++ +ELD T + L G G
Sbjct: 66 FSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGG 125
Query: 209 NFRKGVEQFQLALKISSENVSAHYGLASGLLGLAKQ 244
+ + + + L L ++
Sbjct: 126 RDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEK 161
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275 | Back alignment and structure |
|---|
Score = 51.2 bits (123), Expect = 7e-07
Identities = 24/142 (16%), Positives = 46/142 (32%), Gaps = 8/142 (5%)
Query: 411 LQLDVSLADAWAHIGKLYGEVGEKKLARQAFDSARSIDPSLALPWAGMSADVQASESLVD 470
L+LD + A + G G KLA+ + DP+ + + +
Sbjct: 104 LELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLY--LAEQKLDEK 161
Query: 471 DAFESCLRAVQILPLAEFQIGLAKLAKLSGHLSSSQVF-GAI---QQAIQRGPHYPESHN 526
A E + + + Q G + G++S + H E++
Sbjct: 162 QAKEVLKQHFEKSD--KEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNF 219
Query: 527 LYGLVCEARSDYQAAVVSYRLA 548
G + D +A ++LA
Sbjct: 220 YLGKYYLSLGDLDSATALFKLA 241
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275 | Back alignment and structure |
|---|
Score = 51.2 bits (123), Expect = 8e-07
Identities = 34/222 (15%), Positives = 60/222 (27%), Gaps = 23/222 (10%)
Query: 406 ALIRGLQLDVSLADAWAHIGKLYGEVGEKKLARQAFDSARSIDPSLALPWAGMSADVQAS 465
L D A G LY +G + LAR F A +I P + + + + +
Sbjct: 31 ILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQA 90
Query: 466 ESLVDDAFESCLRAVQILP-LAEFQIGLAKLAKLSGHLSSSQVFGAI---QQAIQRGPHY 521
+ D A+E+ +++ P + G A Q P+
Sbjct: 91 GNF-DAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDK-----LAQDDLLAFYQDDPND 144
Query: 522 PESHNLYGLVCEARSDYQAAVVSYRLARYAISSSSGTVPNSHFQDISINLARSLSRAGNA 581
P L + + QA V + + + + L +S
Sbjct: 145 PFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKE------QWGWNIVEFYLGN-ISEQTLM 197
Query: 582 LDAVRECESLERQGMLDAEVLQVY---AFSLWQLGKYDLALS 620
L + + LG D A +
Sbjct: 198 ERLK---ADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATA 236
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217 | Back alignment and structure |
|---|
Score = 87.6 bits (218), Expect = 1e-19
Identities = 47/238 (19%), Positives = 75/238 (31%), Gaps = 56/238 (23%)
Query: 19 PDDPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNA-------VAFRYLGHYYTRFS 71
L LG+ L+ A F A K NPQ+ LG
Sbjct: 2 QTAEQNPLRLGVQLYALGRYDA-ALTLFERALKENPQDPEALYWLARTQLKLGLV----- 55
Query: 72 IDTQRAIKCYQRAVSLSPDDSVS----GEALCELLEHGGKESLEVVVCREASDKSPRAFW 127
A++ + V+ +P EA L
Sbjct: 56 ---NPALENGKTLVARTPRYLGGYMVLSEAYVAL-------------------------- 86
Query: 128 AFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAI 187
+R+ + +A+ L+ A R P L GL Y LG A S +A+
Sbjct: 87 -YRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQAL 145
Query: 188 ELDDTSIFPLLES----GNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLASGLLGL 241
L+DT E ++L +G + + Q+ AL+ + +++ AS LL
Sbjct: 146 ALEDTP-----EIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLK 198
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217 | Back alignment and structure |
|---|
Score = 67.6 bits (166), Expect = 1e-12
Identities = 29/190 (15%), Positives = 49/190 (25%), Gaps = 20/190 (10%)
Query: 15 LEANPDDPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDT 74
L+ NP DP L + A E+ P+ + L Y
Sbjct: 32 LKENPQDPEALYWLARTQLKLGLVNP-ALENGKTLVARTPRYLGGYMVLSEAYVALYRQA 90
Query: 75 ----------QRAIKCYQRAVSLSPDDSVS----GEALCELLEHGGKESLEVVVCREASD 120
++A+ + A ++P + G L G+ ++A
Sbjct: 91 EDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALL----GERDKAEASLKQALA 146
Query: 121 KSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAI 180
L L L + EA+ A+ P L A G A
Sbjct: 147 LEDTP-EIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAA 205
Query: 181 KSYGRAIELD 190
++
Sbjct: 206 RAAALEHHHH 215
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217 | Back alignment and structure |
|---|
Score = 54.8 bits (133), Expect = 2e-08
Identities = 14/123 (11%), Positives = 39/123 (31%), Gaps = 11/123 (8%)
Query: 132 LGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELD- 190
LG ++ A+ + A++ P P L +LG+ + A+++ +
Sbjct: 11 LGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTP 70
Query: 191 ----------DTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLASGLLG 240
+ + ++ + G + + + A +++ H
Sbjct: 71 RYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYAL 130
Query: 241 LAK 243
L +
Sbjct: 131 LGE 133
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217 | Back alignment and structure |
|---|
Score = 50.6 bits (122), Expect = 5e-07
Identities = 20/105 (19%), Positives = 38/105 (36%), Gaps = 3/105 (2%)
Query: 157 PTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQ 216
T+ LG+ + LG + AA+ + RA++ + L L LG +E
Sbjct: 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALEN 61
Query: 217 FQLALKISSENVSAHYGLASGLLGLAKQCINLGAFRWGASLLEDA 261
+ + + + + L+ + L + G LE A
Sbjct: 62 GKTLVARTPRYLGGYMVLSEAYVALYR---QAEDRERGKGYLEQA 103
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217 | Back alignment and structure |
|---|
Score = 49.8 bits (120), Expect = 1e-06
Identities = 27/141 (19%), Positives = 43/141 (30%), Gaps = 11/141 (7%)
Query: 418 ADAWAHIGKLYGEVGEKKLARQAFDSARSIDPSLALPWAGMSADVQASESLVDDAFESCL 477
+G +G A F+ A +P + A Q LV+ A E+
Sbjct: 5 EQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWL-ARTQLKLGLVNPALENGK 63
Query: 478 RAVQILP-LAEFQIGLAK-LAKLSGHLSSSQVFG-----AI---QQAIQRGPHYPESHNL 527
V P + L++ L + A+ + A + P Y H
Sbjct: 64 TLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQ 123
Query: 528 YGLVCEARSDYQAAVVSYRLA 548
GLV + A S + A
Sbjct: 124 RGLVYALLGERDKAEASLKQA 144
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217 | Back alignment and structure |
|---|
Score = 47.9 bits (115), Expect = 5e-06
Identities = 32/223 (14%), Positives = 63/223 (28%), Gaps = 40/223 (17%)
Query: 329 SSYQRALYLAPWQANIYTDIAITSDLIYSLNEAYGHYQSAWHVSEKMALGALLLEGDNCQ 388
+ ++RAL P +A T + +N A + ++ +
Sbjct: 26 TLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTL-----------VARTPRYLG 74
Query: 389 FWVTLGCLSNYNGLKQHALIRGLQLDVSLADAWAHIGKLYGEVGEKKLARQAFDSARSID 448
++ L + + G + A A ++
Sbjct: 75 GYMVLS--------------------EAYVALYRQAEDRERGKGYLEQALSVLKDAERVN 114
Query: 449 PSLALPWAGMSADVQASESLVDDAFESCLRAVQILPLAEFQIGLAKLAKLSGHLSSSQVF 508
P A V A D A S +A+ + E + LA+L G L
Sbjct: 115 PRYAPLHLQR-GLVYALLGERDKAEASLKQALALEDTPEIRSALAELYLSMGRLD----- 168
Query: 509 GAI---QQAIQRGPHYPESHNLYGLVCEARSDYQAAVVSYRLA 548
A+ +A+++ P + Y + + A + L
Sbjct: 169 EALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALE 211
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365 | Back alignment and structure |
|---|
Score = 90.9 bits (226), Expect = 2e-19
Identities = 57/287 (19%), Positives = 96/287 (33%), Gaps = 30/287 (10%)
Query: 3 EKGALLLQLEDSLEA----------NPDDPSLHLDLGLHLWENSESKEKAAEHFVIAAKL 52
E+G L+ D +P D LG+ EN E+++ A +L
Sbjct: 70 EEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAEN-ENEQAAIVALQRCLEL 128
Query: 53 NPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSV----SGEALCELLEHGG-- 106
P N A L YT S Q A + + + +P +
Sbjct: 129 QPNNLKALMALAVSYTNTS-HQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSP 187
Query: 107 ---KESLEVVVC-REASDKSPRAFWAFR--RLGYLQLHHKKWSEAVQSLQHAIRGYPTSP 160
V EA+ ++ LG L +++ A+ + A+ P
Sbjct: 188 VDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDY 247
Query: 161 HLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLA 220
LW LG A+++Y RA+E+ I G + LG +R+ V F A
Sbjct: 248 SLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTA 307
Query: 221 LKISSENVSAHYGLASGLLGLAKQCINLGAFRWGASLLEDACKVAEA 267
L + ++ + + G N+ A A L D ++ +A
Sbjct: 308 LSLQRKSRNQQQVPHPAISG------NIWAALRIALSLMDQPELFQA 348
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365 | Back alignment and structure |
|---|
Score = 63.5 bits (155), Expect = 1e-10
Identities = 25/216 (11%), Positives = 56/216 (25%), Gaps = 47/216 (21%)
Query: 32 LWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDD 91
+N + + + + + ++ G + D I + A+ P D
Sbjct: 40 EAQNQVTVSASEKGYYFHTENPFKDWPGAFEEGLKRLKEG-DLPVTILFMEAAILQDPGD 98
Query: 92 SVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQH 151
+ A++ LG Q ++ A+ +LQ
Sbjct: 99 A----------------------------------EAWQFLGITQAENENEQAAIVALQR 124
Query: 152 AIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELD----------DTSIFPLLESG 201
+ P + AL ++Y A ++ I+ + S
Sbjct: 125 CLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMS 184
Query: 202 NIFLMLGNFRKGVEQFQLALKISSENVSA--HYGLA 235
+ E + A + + + GL
Sbjct: 185 KSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLG 220
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365 | Back alignment and structure |
|---|
Score = 59.3 bits (144), Expect = 3e-09
Identities = 33/235 (14%), Positives = 70/235 (29%), Gaps = 18/235 (7%)
Query: 328 KSSYQRALYLAPWQANIYTDIAITSDLIYSLNEAYGHYQSAWHVSEKMALGALLLEGDNC 387
K++ + + ++A S N+ Q SEK +
Sbjct: 9 KAAVESDTEFWDKMQAEWEEMA--RRNWISENQEA-QNQVTVSASEKGYYFHTENPFKDW 65
Query: 388 QFWVTLGCLSNYNGLKQHALI---RGLQLDVSLADAWAHIGKLYGEVGEKKLARQAFDSA 444
G G ++ + D A+AW +G E ++ A A
Sbjct: 66 PGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRC 125
Query: 445 RSIDPSLALPWAGMSADVQASESLVDDAFESCLRAVQILP-LAE----FQIGLAKLAKLS 499
+ P+ + A + S DA E+ ++ P + ++S
Sbjct: 126 LELQPNNLKALMAL-AVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMS 184
Query: 500 GHLSSSQVFGAIQ----QAIQRGPHY--PESHNLYGLVCEARSDYQAAVVSYRLA 548
S V ++ +A + P+ G++ ++ A+ ++ A
Sbjct: 185 KSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAA 239
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365 | Back alignment and structure |
|---|
Score = 53.5 bits (129), Expect = 2e-07
Identities = 50/303 (16%), Positives = 93/303 (30%), Gaps = 55/303 (18%)
Query: 329 SSYQRALYLAPWQANIYTDIAITSDLIYSLNEAYGHYQSAWHVSEKMALGALLLEGDNCQ 388
S+ ++ Y N + D + + G E A+L + + +
Sbjct: 48 SASEKGYYFHT--ENPFKDWPGAFEEGLKRLKE-GDLPVTILFMEA----AILQDPGDAE 100
Query: 389 FWVTLGCLSNYNGLKQHALI---RGLQLDVSLADAWAHIGKLYGEVGEKKLARQAFDSAR 445
W LG N +Q A++ R L+L + A + Y ++ A +A +
Sbjct: 101 AWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWI 160
Query: 446 SIDPSLA---------LPWAGMSADVQASESLVDDAFESCLRAVQILP---LAEFQIGLA 493
+P + S+++ E L A + Q GL
Sbjct: 161 KQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLG 220
Query: 494 KLAKLSGHLS-----------------------------SSQVFGAI---QQAIQRGPHY 521
L LSG + + A+ +A++ P +
Sbjct: 221 VLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGF 280
Query: 522 PESHNLYGLVCEARSDYQAAVVSYRLARYAISSSSGTVPNSHFQDISINLARSLSRAGNA 581
S G+ C Y+ AV ++ A ++ S IS N+ +L A +
Sbjct: 281 IRSRYNLGISCINLGAYREAVSNFLTA-LSLQRKSRNQQQVPHPAISGNIWAALRIALSL 339
Query: 582 LDA 584
+D
Sbjct: 340 MDQ 342
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365 | Back alignment and structure |
|---|
Score = 46.6 bits (111), Expect = 3e-05
Identities = 20/125 (16%), Positives = 39/125 (31%), Gaps = 8/125 (6%)
Query: 432 GEKKL--ARQAFDSARSIDPSLALPWAGMSADVQASESLV---DDAFESCLRAVQILPLA 486
G + A+ A +S + W M+ SE+ + +
Sbjct: 1 GAMEFERAKAAVESDTEFWDKMQAEWEEMARRNWISENQEAQNQVTVSASEKGYYFHTEN 60
Query: 487 EFQIGLAKLAKLSGHLSSSQVFGAI---QQAIQRGPHYPESHNLYGLVCEARSDYQAAVV 543
F+ + L + I + AI + P E+ G+ + QAA+V
Sbjct: 61 PFKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIV 120
Query: 544 SYRLA 548
+ +
Sbjct: 121 ALQRC 125
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 88.8 bits (220), Expect = 2e-18
Identities = 38/248 (15%), Positives = 78/248 (31%), Gaps = 24/248 (9%)
Query: 8 LLQLEDSLEANPDDPSLHLDLGLHLWENSESKEK---AAEHFVIAAKLNPQNAVAFRYLG 64
+ L ++ NPD+ L + L L L + E E+ + A + P R
Sbjct: 195 IDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAA 254
Query: 65 HYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPR 124
+Y R + +AI+ ++A+ P+++ C++ +
Sbjct: 255 KFYRR-KDEPDKAIELLKKALEYIPNNA---YLHCQI---------GCCYRAKVFQVMNL 301
Query: 125 AFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYG 184
L + AV L+ A + L + + A +
Sbjct: 302 RENGMYGKRKLL---ELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQ 358
Query: 185 RAI--ELDDTSIFPLLESGNIFLM--LGNFRKGVEQFQLALKISSENVSAHYGLASGLLG 240
+ EL + L F + + K + F +KI+ ++ L
Sbjct: 359 KEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDK-LQK 417
Query: 241 LAKQCINL 248
+AK ++
Sbjct: 418 IAKMRLSK 425
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 80.4 bits (198), Expect = 1e-15
Identities = 62/478 (12%), Positives = 121/478 (25%), Gaps = 73/478 (15%)
Query: 100 ELLEHGGK-ESLEVVVCREASDKSPRAF-WAFRRLGYLQLHHKKWSEAVQSLQHAIR--- 154
L+E + E V ++ L YL+ + A++ L+ A
Sbjct: 23 NLMEGENSLDDFEDKVFYRTEFQNREFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQ 82
Query: 155 ------GYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFP--------LLES 200
S W Y+ +G S + + + P E
Sbjct: 83 QEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEE 142
Query: 201 GNIFLMLG--NFRKGVEQFQLALKISSENVSAHYGLASGLLGLAKQCINLGAFRWGASLL 258
G L G + F+ AL+ +N GLA L + A +
Sbjct: 143 GWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAI 202
Query: 259 EDACKVAEANTRLAGNMSCIWKLHGDIQLTYAKCFPWAEERQSLEFDVETFSA----SIV 314
LA + + + + K ++LE +
Sbjct: 203 RLNPDNQYLKVLLALKLHKMREEGEEEG-EGEKLV-----EEALEKAPGVTDVLRSAAKF 256
Query: 315 SWKTTCLMAAISSKSSYQRALYLAPWQANIYTDIAITSDLIYSLNEAYGHYQSAWHVSEK 374
+ AI ++AL P A ++ I Y + K
Sbjct: 257 YRRKDEPDKAIEL---LKKALEYIPNNAYLHCQIG----CCYRAKVFQVMNLRENGMYGK 309
Query: 375 MALGALLLEGDNCQFWVTLGCLSNYNGLKQHALIRGLQLDVSLADAWAHIGKLYGEVGEK 434
L L+ +++ + + + +L + + L+ +
Sbjct: 310 RKLLELIGH-----------AVAHLK--------KADEANDNLFRVCSILASLHALADQY 350
Query: 435 KLARQAFDSARSIDPSLALPWA---GMSADVQASESLVDDAFESCLRAVQILP-LAEFQI 490
+ A F S + + D A + V+I E +
Sbjct: 351 EEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEK 410
Query: 491 GLAKLAKLSGHLSSSQVFGAIQQAIQRGPHYPESHNLYGLVCEARSDYQAAVVSYRLA 548
KL K+ + + + E+ ++ + E Q A
Sbjct: 411 MKDKLQKI------------AKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERG 456
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 77.7 bits (191), Expect = 6e-15
Identities = 67/492 (13%), Positives = 127/492 (25%), Gaps = 81/492 (16%)
Query: 2 DEKGALLLQLEDSLEA------NPDDPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQ 55
E L ED + ++ L + E A E A +L Q
Sbjct: 25 MEGENSLDDFEDKVFYRTEFQNREFKATMCNLLAYLKHLKGQ-NEAALECLRKAEELIQQ 83
Query: 56 NAVAF---RYLGHYYTRFSI-----DTQRAIKCYQRAVSLSPD-----DSVSGEALCE-- 100
R L + + + + S E CE
Sbjct: 84 EHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEG 143
Query: 101 --LLEHGGKESLEVVVC-REASDKSPRAFWAFRRLGYLQLHHKKW---SEAVQSLQHAIR 154
L+ GG ++ VC +A +K P+ L W A+ L+ AIR
Sbjct: 144 WTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIR 203
Query: 155 GYPTSPHLWEALGLAYHRL----GMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNF 210
P + +L L L H++ K A+E L + +
Sbjct: 204 LNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEP 263
Query: 211 RKGVEQFQLALKISSENVSAHYGLASGLLGLAKQCINLGAFRWGASLLEDACKVAEANTR 270
K +E + AL+ N H + Q +NL K+ E
Sbjct: 264 DKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMY-----GKRKLLELIGH 318
Query: 271 LAGNMSCIWKLHGDIQLTYAKCFPWAEERQSLEFDVETFSASIVSWKTTCLMAAISSKSS 330
++ + + ++ + + A
Sbjct: 319 AVAHLKKADEANDNLFRVC-------------------SILASLHALADQYEEAE---YY 356
Query: 331 YQRALYLAPWQANIYTDIAITSDLIYSLNEAYGHYQSAWHVSEKMALG----ALLLEGDN 386
+Q+ +T L+ YG++Q E A+ + + +
Sbjct: 357 FQKEF-----------SKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKS 405
Query: 387 CQFWVTLGCLSNYNGLKQHALIRGLQLDVSLADAWAHIGKLYGEVGEKKLARQAFDSARS 446
+ L Q L + + ++A + L + + A + +
Sbjct: 406 REKEKMKDKL-------QKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLE 458
Query: 447 IDPSLALPWAGM 458
+ +
Sbjct: 459 SGSLIPSASSWN 470
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368 | Back alignment and structure |
|---|
Score = 87.4 bits (217), Expect = 2e-18
Identities = 49/251 (19%), Positives = 81/251 (32%), Gaps = 19/251 (7%)
Query: 8 LLQLEDSLEANPDDPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYY 67
+L E +++ +P LG EN E + A +L P N A L +
Sbjct: 84 VLLFEAAVQQDPKHMEAWQYLGTTQAEN-EQELLAISALRRCLELKPDNQTALMALAVSF 142
Query: 68 TRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGK-ESLEVVVCREASDKSPRAF 126
T S ++A + + + +P + E G S ++ +
Sbjct: 143 TNES-LQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVK 201
Query: 127 WAFRR----------------LGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAY 170
F LG L ++ +AV A+ P LW LG
Sbjct: 202 ELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATL 261
Query: 171 HRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSA 230
A+ +Y RA+EL I G + LG R+ VE F AL + ++
Sbjct: 262 ANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGP 321
Query: 231 HYGLASGLLGL 241
+ +
Sbjct: 322 RGEGGAMSENI 332
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368 | Back alignment and structure |
|---|
Score = 73.1 bits (180), Expect = 1e-13
Identities = 28/220 (12%), Positives = 65/220 (29%), Gaps = 24/220 (10%)
Query: 37 ESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSG- 95
+ E + + KL + + + S Y + ++ +
Sbjct: 8 SAIESDVDFW---DKLQAELEEMAKRDAEAHPWLSDYDDLTSATYDKGYQFEEENPLRDH 64
Query: 96 EALCEL---LEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHA 152
E G V++ A + P+ A++ LG Q +++ A+ +L+
Sbjct: 65 PQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRC 124
Query: 153 IRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELD---------------DTSIFPL 197
+ P + AL +++ + A + + + P
Sbjct: 125 LELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPS 184
Query: 198 LESGNIFLMLGNFRKGVEQFQLALKISSENVSA--HYGLA 235
L F + E F A+++ ++ GL
Sbjct: 185 KRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLG 224
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368 | Back alignment and structure |
|---|
Score = 65.8 bits (161), Expect = 2e-11
Identities = 43/217 (19%), Positives = 67/217 (30%), Gaps = 50/217 (23%)
Query: 11 LEDSLEANPDDPSL---------HLDLGLHLWE-----NSESKEKAAEHFVIAAKLNPQN 56
L D L P L LG + + E F+ A +L+P +
Sbjct: 155 LRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTS 214
Query: 57 A---------VAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVS----GEALCELLE 103
V F G Y +A+ C+ A+S+ P+D + G L
Sbjct: 215 IDPDVQCGLGVLFNLSGEY--------DKAVDCFTAALSVRPNDYLLWNKLGATLANG-- 264
Query: 104 HGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYP------ 157
+ V R A + P + LG ++ EAV+ A+
Sbjct: 265 --NQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPR 322
Query: 158 -----TSPHLWEALGLAYHRLGMFSAAIKSYGRAIEL 189
S ++W L LA LG A + R +
Sbjct: 323 GEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLST 359
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368 | Back alignment and structure |
|---|
Score = 58.9 bits (143), Expect = 5e-09
Identities = 40/242 (16%), Positives = 75/242 (30%), Gaps = 25/242 (10%)
Query: 331 YQRALYLAPWQANIYTDIAIT-SDLIYSLNEAYGHYQSAWHVSEKMALGALLLEGDN--- 386
++RA + + + ++ EA+ ++ E +N
Sbjct: 3 FERAKSAIESDVDFWDKLQAELEEMAKRDAEAHPWLSDYDDLTSATYDKGYQFEEENPLR 62
Query: 387 -CQFWVTLGCLSNYNGLKQHALI---RGLQLDVSLADAWAHIGKLYGEVGEKKLARQAFD 442
G G +A++ +Q D +AW ++G E ++ LA A
Sbjct: 63 DHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALR 122
Query: 443 SARSIDPSLALPWAGMSADVQASESLVDDAFESCLRAVQILP----------LAEFQIGL 492
+ P + A +ESL A E ++ P GL
Sbjct: 123 RCLELKPDNQTALMAL-AVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGL 181
Query: 493 AKLAKLSGHLSSSQVF-GAI---QQAIQRGPHY--PESHNLYGLVCEARSDYQAAVVSYR 546
++ G L S +F A++ P P+ G++ +Y AV +
Sbjct: 182 GPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFT 241
Query: 547 LA 548
A
Sbjct: 242 AA 243
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368 | Back alignment and structure |
|---|
Score = 53.5 bits (129), Expect = 2e-07
Identities = 49/329 (14%), Positives = 88/329 (26%), Gaps = 74/329 (22%)
Query: 329 SSYQRALYLAPWQANIYTDIAITSDLIYSLNEAYGHYQSAWHVSEKMALGALLLEGDNCQ 388
++Y + N D + + G +A + E A+ + + +
Sbjct: 47 ATYDKGYQFEE--ENPLRDHPQPFEEGLRRLQE-GDLPNAVLLFEA----AVQQDPKHME 99
Query: 389 FWVTLGCLSNYNGLKQHALI---RGLQLDVSLADAWAHIGKLYGEVGEKKLARQAFDSAR 445
W LG N + A+ R L+L A + + ++ A +
Sbjct: 100 AWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWL 159
Query: 446 SIDPSLALPWAGMSADVQ--------------ASESLVDDAFESCLRAVQILP---LAEF 488
P+ A S+SL + E L AV++ P +
Sbjct: 160 RYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDV 219
Query: 489 QIGLAKLAKLSGHLS-----------------------------SSQVFGAI---QQAIQ 516
Q GL L LSG +Q A+ ++A++
Sbjct: 220 QCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALE 279
Query: 517 RGPHYPESHNLYGLVCEARSDYQAAVVSYRLARYAISSSSGTVPNSHFQDISINLARSLS 576
P Y S G+ C ++ AV + A++ +
Sbjct: 280 LQPGYIRSRYNLGISCINLGAHREAVEHFLE---ALNM------QRKSRGPRGEGGAMSE 330
Query: 577 RAGNALDAVRECESLERQGMLDAEVLQVY 605
+ L L G D
Sbjct: 331 NIWSTLRLA-----LSMLGQSD-AYGAAD 353
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151 | Back alignment and structure |
|---|
Score = 81.8 bits (202), Expect = 3e-18
Identities = 23/148 (15%), Positives = 41/148 (27%), Gaps = 9/148 (6%)
Query: 96 EALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRG 155
A+ + + G ++ + Y + + EA +
Sbjct: 13 TAVIDAINSGA-------TLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY 65
Query: 156 YPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVE 215
+ L Y F A Y A L P+ +G L L K E
Sbjct: 66 DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKE 125
Query: 216 QFQLALKISSENVSAHYGLASGLLGLAK 243
F+L ++ S++ A L +
Sbjct: 126 CFELVIQHSNDE--KLKIKAQSYLDAIQ 151
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151 | Back alignment and structure |
|---|
Score = 50.6 bits (121), Expect = 2e-07
Identities = 14/87 (16%), Positives = 35/87 (40%), Gaps = 2/87 (2%)
Query: 15 LEANPDDPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDT 74
+ + + L +++ E ++AA+ + +A L + + G R
Sbjct: 63 CIYDFYNVDYIMGLA-AIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLK-AP 120
Query: 75 QRAIKCYQRAVSLSPDDSVSGEALCEL 101
+A +C++ + S D+ + +A L
Sbjct: 121 LKAKECFELVIQHSNDEKLKIKAQSYL 147
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151 | Back alignment and structure |
|---|
Score = 50.6 bits (121), Expect = 2e-07
Identities = 23/155 (14%), Positives = 36/155 (23%), Gaps = 36/155 (23%)
Query: 11 LEDSLEANPDDPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRF 70
L+D D + N E+A F + N L Y
Sbjct: 25 LKDINAIPDDMMDDIYSYAYDFY-NKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIK 83
Query: 71 SIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFR 130
Q+A Y A +L +D +
Sbjct: 84 E-QFQQAADLYAVAFALGKND----------------------------------YTPVF 108
Query: 131 RLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEA 165
G QL K +A + + I+ +A
Sbjct: 109 HTGQCQLRLKAPLKAKECFELVIQHSNDEKLKIKA 143
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151 | Back alignment and structure |
|---|
Score = 40.9 bits (96), Expect = 4e-04
Identities = 16/132 (12%), Positives = 36/132 (27%), Gaps = 14/132 (10%)
Query: 321 LMAAISSKSSYQRALYLAPWQANIYTDIAITSDLIYSLNEAYGHYQSAWHVSEKMALGAL 380
++ AI+S ++ + + + A Y G + A
Sbjct: 15 VIDAINSGATLKDINAIPDDMMDDIYSYA------YDFYNK-GRIEEAEVFFRF----LC 63
Query: 381 LLEGDNCQFWVTLGCLSNYNGLKQHALI---RGLQLDVSLADAWAHIGKLYGEVGEKKLA 437
+ + N + + L + Q A L + H G+ + A
Sbjct: 64 IYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKA 123
Query: 438 RQAFDSARSIDP 449
++ F+
Sbjct: 124 KECFELVIQHSN 135
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474 | Back alignment and structure |
|---|
Score = 88.1 bits (218), Expect = 4e-18
Identities = 43/249 (17%), Positives = 80/249 (32%), Gaps = 42/249 (16%)
Query: 8 LLQLEDSLEANPDDPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYY 67
L Q+E+ L + + + G L + +A A KL P+ A+ LG Y
Sbjct: 88 LQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVY 147
Query: 68 TRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFW 127
+ D A C+ A++ + +L L
Sbjct: 148 WKKG-DVTSAHTCFSGALTHCKNK----VSLQNLS------------------------M 178
Query: 128 AFRRLG--YLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAY--------HRLGMFS 177
R+L H + ++V+ + A++ W LG AY +
Sbjct: 179 VLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQ 238
Query: 178 AAIKSYGRAIELD-DTSIFPLLES--GNIFLMLGNFRKGVEQFQLALKISSENVSAHYGL 234
A+ +Y +A ++D S P L + ++ + +E F A +
Sbjct: 239 QALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQRE 298
Query: 235 ASGLLGLAK 243
L L++
Sbjct: 299 QQLLEFLSR 307
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474 | Back alignment and structure |
|---|
Score = 77.0 bits (189), Expect = 1e-14
Identities = 33/232 (14%), Positives = 71/232 (30%), Gaps = 21/232 (9%)
Query: 11 LEDSLEANPDDPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRF 70
L +++ P+ LG W+ + A F A N V+ + L +
Sbjct: 126 LSKAVKLEPELVEAWNQLGEVYWKKGDVTS-AHTCFSGALTHCK-NKVSLQNLSMVLRQL 183
Query: 71 SIDT--------QRAIKCYQRAVSLSPDDSVS----GEALCELLEHGGKESLEVVVCREA 118
D+ +++ + AV + D S G A L + G+ A
Sbjct: 184 QTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSA 243
Query: 119 SDK-------SPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYH 171
+ + L + + + EA++ A P P +
Sbjct: 244 YAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLE 303
Query: 172 RLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKI 223
L ++ ++S G+ S+ L ++ + ++ L++
Sbjct: 304 FLSRLTSLLESKGKTKPKKLQSMLGSLRPAHLGPCGDGRYQSASGQKMTLEL 355
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474 | Back alignment and structure |
|---|
Score = 58.9 bits (142), Expect = 6e-09
Identities = 38/224 (16%), Positives = 77/224 (34%), Gaps = 29/224 (12%)
Query: 353 DLIYSLNEAYGHYQSAWHVSEKM--ALG----ALLLEGDNCQFWVTLG-CLSNYNGLKQH 405
D + + + V E+M L L Q + G L+
Sbjct: 62 DSYFETHSVEDAGRKQQDVQEEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPE 121
Query: 406 ALI---RGLQLDVSLADAWAHIGKLYGEVGEKKLARQAFDSARSIDP--------SLALP 454
A + + ++L+ L +AW +G++Y + G+ A F A + S+ L
Sbjct: 122 AEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKNKVSLQNLSMVLR 181
Query: 455 WAGMSADVQASESLVDDAFESCLRAVQILPL---AEFQIGLAKLAKLSGHLSSSQVFG-- 509
+ + S + D+ AVQ+ L + + +G A L+ + ++
Sbjct: 182 QLQTDSGDEHSRHV-MDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQA 240
Query: 510 --AIQQAIQRGPHYPESHNLY---GLVCEARSDYQAAVVSYRLA 548
A QA + + +L+ + + Y A+ + A
Sbjct: 241 LSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQA 284
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474 | Back alignment and structure |
|---|
Score = 58.5 bits (141), Expect = 8e-09
Identities = 19/117 (16%), Positives = 42/117 (35%), Gaps = 5/117 (4%)
Query: 128 AFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFS-AAIKSYGRA 186
A R+ +Q ++ + +Q ++ + G A + +S A +A
Sbjct: 73 AGRKQQDVQ---EEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKA 129
Query: 187 IELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLASGLLGLAK 243
++L+ + + G ++ G+ F AL +N + L+ L L
Sbjct: 130 VKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTH-CKNKVSLQNLSMVLRQLQT 185
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474 | Back alignment and structure |
|---|
Score = 49.6 bits (118), Expect = 5e-06
Identities = 52/450 (11%), Positives = 113/450 (25%), Gaps = 85/450 (18%)
Query: 140 KKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLE 199
+K V L Y + + +A ++ + L+
Sbjct: 48 QKLQGLVDRLYCFRDSYFETHSVEDAGRKQQDVQEEMEKTLQQMEEVLGSAQVEAQALML 107
Query: 200 SGNIFLMLGNFRKGVEQ-FQLALKISSENVSAHYGLAS-----GLLGLAKQCINLGAFRW 253
G + ++ E A+K+ E V A L G + A C +
Sbjct: 108 KGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFS------ 161
Query: 254 GASLLEDACKVAE--ANTRLAGNMSCIWKLHGDIQLTYAKCFPWAEERQSLEFDVETFSA 311
N N+S + +
Sbjct: 162 ---------GALTHCKNKVSLQNLSMVLRQLQTDSGDEHS-------------------- 192
Query: 312 SIVSWKTTCLMAAISSKSSYQRALYLAPWQANIYTDIAIT-SDLIYSLNEAYGHYQSAWH 370
+M ++ + A+ + + + L ++ + Q A
Sbjct: 193 -------RHVMDSV---RQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALS 242
Query: 371 VSEKMALGALLLEGDNCQFWVTLGCLSNYNGLKQHAL---IRGLQLDVSLADAWAHIGKL 427
+ A N + L Y AL + LD + + +L
Sbjct: 243 AYAQ-AEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQL 301
Query: 428 YGEVGEKKLARQAFDSAR-----SIDPSLALPWAGMSADVQASESLVDDAFESCLRAVQI 482
+ ++ + S+ SL G D + + +++
Sbjct: 302 LEFLSRLTSLLESKGKTKPKKLQSMLGSLRPAHLGPCGDGRYQSASGQKM------TLEL 355
Query: 483 LPLAEFQIGLAKLAKLSGHLSSSQVFGAIQQAIQRGPHYPESHNLYGLVCEARSDYQAAV 542
PL+ Q G+ G + +V ++ E + ++ AV
Sbjct: 356 KPLSTLQPGVNS-----GTVVLGKVVFSLTT--------EEKVPFTFGLVDSDGPC-YAV 401
Query: 543 VSYRLAR--YAISSSSGTVPNSHFQDISIN 570
+ Y + + + S +P + + I
Sbjct: 402 MVYNVVQSWGVLIGDSVAIPEPNLRHHQIR 431
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 82.9 bits (205), Expect = 6e-18
Identities = 25/188 (13%), Positives = 59/188 (31%), Gaps = 27/188 (14%)
Query: 55 QNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVV 114
Q A G +A+ +++ ++L+ D + E+
Sbjct: 9 QKVSAAIEAGQN--------GQAVSYFRQTIALNIDRT------------------EMYY 42
Query: 115 CREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLG 174
S + L ++ + +A + ++ P + EA G
Sbjct: 43 WTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRG 102
Query: 175 MFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGN-FRKGVEQFQLALKISSENVSAHYG 233
A++ Y + ++L+ ++ + GN + + +K +E L ++ A Y
Sbjct: 103 QEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYR 162
Query: 234 LASGLLGL 241
L
Sbjct: 163 DGLSKLFT 170
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 80.6 bits (199), Expect = 4e-17
Identities = 29/206 (14%), Positives = 59/206 (28%), Gaps = 22/206 (10%)
Query: 25 HLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRY----------------LGHYYT 68
L E +A +F LN + + L Y
Sbjct: 7 MLQKVSAAIEA-GQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYK 65
Query: 69 RFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWA 128
+ + +A Y+ + +P++ EA E+ G+E + + + A
Sbjct: 66 KNR-NYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAA 124
Query: 129 FRRLG-YLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAI 187
LG Y L ++ + +++ + + GL+ + A S + I
Sbjct: 125 NIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVI 184
Query: 188 ELD-DTSIFPLLESGNIFLMLGNFRK 212
T L I + +
Sbjct: 185 LRFPSTEAQKTL--DKILRIEKEVNR 208
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 70.9 bits (174), Expect = 7e-14
Identities = 19/133 (14%), Positives = 45/133 (33%), Gaps = 16/133 (12%)
Query: 128 AFRRLGYLQLHHKKWSEAVQSLQHAIRGYP----------------TSPHLWEALGLAYH 171
+ + + +AV + I S L L LAY
Sbjct: 6 EMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYK 65
Query: 172 RLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAH 231
+ + A Y ++ ++ L + + G + + ++ L++ ++N++A+
Sbjct: 66 KNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAAN 125
Query: 232 YGLASGLLGLAKQ 244
L + A+Q
Sbjct: 126 IFLGNYYYLTAEQ 138
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 60.9 bits (148), Expect = 2e-10
Identities = 23/164 (14%), Positives = 49/164 (29%), Gaps = 36/164 (21%)
Query: 11 LEDSLEANPDDPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRF 70
++ L+ P++ + ++ A + +L N A +LG+YY
Sbjct: 77 YKELLQKAPNNVDCLEACAEMQVCRGQ-EKDALRMYEKILQLEADNLAANIFLGNYYYLT 135
Query: 71 SIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFR 130
+ ++ ++ + +S +A
Sbjct: 136 AEQEKKKLETDYKKLSSPTKMQ----------------------------------YARY 161
Query: 131 RLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLG 174
R G +L ++ +A SLQ I +P S + L
Sbjct: 162 RDGLSKLFTTRYEKARNSLQKVILRFP-STEAQKTLDKILRIEK 204
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 54.4 bits (131), Expect = 3e-08
Identities = 32/187 (17%), Positives = 63/187 (33%), Gaps = 18/187 (9%)
Query: 329 SSYQRALYLAPWQANIY------TDIAITSDLIYSLNEAY---GHYQSAWHVSEKMALGA 379
S +++ + L + +Y + I+S L L AY +Y A+ ++
Sbjct: 25 SYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKE----L 80
Query: 380 LLLEGDNCQFWVTLGCLSNYNGLKQHALI---RGLQLDVSLADAWAHIGKLYGEVGEK-K 435
L +N + G ++ AL + LQL+ A +G Y E+ K
Sbjct: 81 LQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEK 140
Query: 436 LARQAFDSARSIDPSLALPWAGMSADVQASESLVDDAFESCLRAVQILPLAEFQIGLAKL 495
+ S + + + + A S + + P E Q L K+
Sbjct: 141 KKLETDYKKLSSPTKMQYARYRD-GLSKLFTTRYEKARNSLQKVILRFPSTEAQKTLDKI 199
Query: 496 AKLSGHL 502
++ +
Sbjct: 200 LRIEKEV 206
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 47.0 bits (112), Expect = 8e-06
Identities = 32/261 (12%), Positives = 65/261 (24%), Gaps = 79/261 (30%)
Query: 197 LLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLASGLLGLAKQCINLGAFRWGAS 256
+L+ + + G + V F+ + ++ + +Y
Sbjct: 7 MLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYY------------------------ 42
Query: 257 LLEDACKVAEANTRLAGNMSCIWKLHGDIQLTYAKCFPWAEERQSLEFDVETFSASIVSW 316
+ K +E +++LA ++ +K + +
Sbjct: 43 -WTNVDKNSEISSKLATELALAYKKNRNYD------------------------------ 71
Query: 317 KTTCLMAAISSKSSYQRALYLAPWQANIYTDIAITSDLIYSLNEAYGHYQSAWHVSEKMA 376
A Y+ L AP + A +A Y+
Sbjct: 72 ------KAYLF---YKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKI-------- 114
Query: 377 LGALLLEGDNCQFWVTLGCLSNYNGLKQHALI----RGLQLDVSLADAWAHIGKLYGEVG 432
L LE DN + LG ++ + + L + A G
Sbjct: 115 ---LQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTT 171
Query: 433 EKKLARQAFDSARSIDPSLAL 453
+ AR + PS
Sbjct: 172 RYEKARNSLQKVILRFPSTEA 192
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 47.0 bits (112), Expect = 1e-05
Identities = 14/94 (14%), Positives = 25/94 (26%), Gaps = 16/94 (17%)
Query: 158 TSPHLWEALGLAYHRLGMFSAAIKSYGRAIELD----------------DTSIFPLLESG 201
S A G A+ + + I L+ + S E
Sbjct: 2 QSVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELA 61
Query: 202 NIFLMLGNFRKGVEQFQLALKISSENVSAHYGLA 235
+ N+ K ++ L+ + NV A
Sbjct: 62 LAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACA 95
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 44.7 bits (106), Expect = 5e-05
Identities = 16/132 (12%), Positives = 35/132 (26%), Gaps = 3/132 (2%)
Query: 418 ADAWAHIGKLYGEVGEKKLARQAFDSARSIDPSLALPWAGMSADVQASESLVDDAFESCL 477
+ + Y + A + P+ A++Q DA
Sbjct: 54 SKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEAC-AEMQVCRGQEKDALRMYE 112
Query: 478 RAVQILP-LAEFQIGLAKLAKLSGHLSSSQVFGAIQQAIQRGPHYPESHNLYGLVCEARS 536
+ +Q+ I L L+ ++ + + + GL +
Sbjct: 113 KILQLEADNLAANIFLGNYYYLTAEQEKKKLE-TDYKKLSSPTKMQYARYRDGLSKLFTT 171
Query: 537 DYQAAVVSYRLA 548
Y+ A S +
Sbjct: 172 RYEKARNSLQKV 183
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 43.6 bits (103), Expect = 1e-04
Identities = 19/206 (9%), Positives = 52/206 (25%), Gaps = 34/206 (16%)
Query: 418 ADAWAHIGKLYGEVGEKKLARQAFDSARSIDPSLALPWAGMSADVQASESLVDDAFESCL 477
D E G+ A F +++ + +
Sbjct: 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRT------------------EMYYWTN 45
Query: 478 RAVQILPLAEFQIGLAKLAKLSGHLSSSQVFGAIQQAIQRGPHYPESHNLYGLVCEARSD 537
++ LA K + + + + ++ +Q+ P+ + + R
Sbjct: 46 VDKNSEISSKLATELALAYKKNRNYDKA--YLFYKELLQKAPNNVDCLEACAEMQVCRGQ 103
Query: 538 YQAAVVSYRLARYAISSSSGTVPNSHFQDISINLARSLSRAGNALDAVRECESLERQGML 597
+ A+ Y + + +I L + E+ ++
Sbjct: 104 EKDALRMY---EKILQL------EADNLAANIFLGNYYYLTAEQEKK--KLETDYKKLSS 152
Query: 598 DAEVLQVY---AFSLWQLGKYDLALS 620
++ S +Y+ A +
Sbjct: 153 PTKMQYARYRDGLSKLFTTRYEKARN 178
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148 | Back alignment and structure |
|---|
Score = 78.4 bits (193), Expect = 4e-17
Identities = 17/111 (15%), Positives = 31/111 (27%)
Query: 116 REASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGM 175
++ S L + Q + +A Q + LG +G
Sbjct: 11 AMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQ 70
Query: 176 FSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSE 226
+ AI SY +D + L G + LA ++ +
Sbjct: 71 YDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIAN 121
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148 | Back alignment and structure |
|---|
Score = 54.1 bits (130), Expect = 1e-08
Identities = 11/109 (10%), Positives = 26/109 (23%)
Query: 144 EAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNI 203
++ + +L ++ G + A + LD L G
Sbjct: 5 SGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGAC 64
Query: 204 FLMLGNFRKGVEQFQLALKISSENVSAHYGLASGLLGLAKQCINLGAFR 252
+G + + + + + A LL +
Sbjct: 65 RQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLF 113
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148 | Back alignment and structure |
|---|
Score = 53.4 bits (128), Expect = 2e-08
Identities = 24/151 (15%), Positives = 41/151 (27%), Gaps = 13/151 (8%)
Query: 11 LEDSLEANPDDPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRF 70
+ E + D L + + S E A F L+ ++ F LG
Sbjct: 10 IAMLNEISSDTLEQLYSLAFNQY-QSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAM 68
Query: 71 SIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFR 130
AI Y + + E L G+ ++ + +
Sbjct: 69 G-QYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGE-----------LAEAESGLFLAQ 116
Query: 131 RLGYLQLHHKKWSEAVQSLQHAIRGYPTSPH 161
L + S V S+ AI+ H
Sbjct: 117 ELIANXPEFXELSTRVSSMLEAIKLKKEMKH 147
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148 | Back alignment and structure |
|---|
Score = 48.8 bits (116), Expect = 9e-07
Identities = 16/144 (11%), Positives = 29/144 (20%), Gaps = 35/144 (24%)
Query: 49 AAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKE 108
+++ L + + A +Q L D
Sbjct: 13 LNEISSDTLEQLYSLAFNQYQSGX-YEDAHXVFQALCVLDHYD----------------- 54
Query: 109 SLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGL 168
F LG + ++ A+ S + P
Sbjct: 55 -----------------SRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAE 97
Query: 169 AYHRLGMFSAAIKSYGRAIELDDT 192
+ G + A A EL
Sbjct: 98 CLLQXGELAEAESGLFLAQELIAN 121
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148 | Back alignment and structure |
|---|
Score = 40.7 bits (95), Expect = 5e-04
Identities = 18/130 (13%), Positives = 44/130 (33%), Gaps = 18/130 (13%)
Query: 326 SSKSSYQRALYLAPWQANIYTDIAITSDLIYSLNEAYGHYQSAWHVSEKMALGALLLEGD 385
S + ++ +A ++ ++ G Y+ A V + +L+
Sbjct: 5 SGGGTIAMLNEISSDTLEQLYSLA------FNQYQS-GXYEDAHXVFQA----LCVLDHY 53
Query: 386 NCQFWVTLGCLSNYNGLKQH-----ALIRGLQLDVSLADAWAHIGKLYGEVGEKKLARQA 440
+ +F++ LG + Q+ + G +D+ H + + GE A
Sbjct: 54 DSRFFLGLGAC--RQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESG 111
Query: 441 FDSARSIDPS 450
A+ + +
Sbjct: 112 LFLAQELIAN 121
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186 | Back alignment and structure |
|---|
Score = 72.9 bits (180), Expect = 8e-15
Identities = 32/222 (14%), Positives = 65/222 (29%), Gaps = 51/222 (22%)
Query: 17 ANPD-DPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNA-------VAFRYLGHYYT 68
N D + D G+ + +A + + +A+ G
Sbjct: 2 GNDDIRQVYYRDKGISH-AKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAV-- 58
Query: 69 RFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWA 128
R + +R+++ +PD+ + L G
Sbjct: 59 ------DRGTELLERSLADAPDNV---KVATVL---G---------------------LT 85
Query: 129 FRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIE 188
+ ++ K+ AV L P + ++ LG+A LG F AI S+ A+
Sbjct: 86 YVQVQ-------KYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALG 138
Query: 189 LDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSA 230
L + +G + + F+ A ++
Sbjct: 139 LRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEGASVE 180
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186 | Back alignment and structure |
|---|
Score = 69.0 bits (170), Expect = 2e-13
Identities = 26/192 (13%), Positives = 59/192 (30%), Gaps = 35/192 (18%)
Query: 52 LNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLE 111
+ V +R G + + +A+ ++ D + L G
Sbjct: 3 NDDIRQVYYRDKGISHAKAG-RYSQAVMLLEQVYDADAFDV---DVALHL---GI----- 50
Query: 112 VVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYH 171
A+ + G + L+ ++ P + + LGL Y
Sbjct: 51 ----------------AYVKTG-------AVDRGTELLERSLADAPDNVKVATVLGLTYV 87
Query: 172 RLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAH 231
++ + A+ + E + + G LG F + ++ F++AL + H
Sbjct: 88 QVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVH 147
Query: 232 YGLASGLLGLAK 243
+A + +
Sbjct: 148 RAIAFSYEQMGR 159
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186 | Back alignment and structure |
|---|
Score = 68.6 bits (169), Expect = 3e-13
Identities = 29/183 (15%), Positives = 55/183 (30%), Gaps = 50/183 (27%)
Query: 15 LEANPDDPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNA-------VAFRYLGHYY 67
+A+ D + L LG+ + E + P N + + + Y
Sbjct: 35 YDADAFDVDVALHLGIAYVKTGAVDR-GTELLERSLADAPDNVKVATVLGLTYVQVQKY- 92
Query: 68 TRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFW 127
A+ + +P + L G
Sbjct: 93 -------DLAVPLLIKVAEANPINF---NVRFRL---G---------------------V 118
Query: 128 AFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAI 187
A LG ++ EA+ S + A+ P + A+ +Y ++G A+ + +A
Sbjct: 119 ALDNLG-------RFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKAN 171
Query: 188 ELD 190
ELD
Sbjct: 172 ELD 174
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186 | Back alignment and structure |
|---|
Score = 45.1 bits (108), Expect = 3e-05
Identities = 21/84 (25%), Positives = 33/84 (39%), Gaps = 5/84 (5%)
Query: 15 LEANPDDPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDT 74
EANP + ++ LG+ L E A + F IA L P R + Y +
Sbjct: 103 AEANPINFNVRFRLGVALDNLGRFDE-AIDSFKIALGLRPNEGKVHRAIAFSYEQMG-RH 160
Query: 75 QRAIKCYQRAVSLSPDDSVSGEAL 98
+ A+ +++A L S L
Sbjct: 161 EEALPHFKKANELDEGAS---VEL 181
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186 | Back alignment and structure |
|---|
Score = 43.2 bits (103), Expect = 1e-04
Identities = 24/144 (16%), Positives = 47/144 (32%), Gaps = 14/144 (9%)
Query: 411 LQLDVSLADAWAHIGKLYGEVGEKKLARQAFDSARSIDPSLALPWAGMSADVQASESLVD 470
D D H+G Y + G + + + + P + + D
Sbjct: 35 YDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKY-D 93
Query: 471 DAFESCLRAVQILP-LAE--FQIGLAKLAKLSGHLSSSQVFGAI---QQAIQRGPHYPES 524
A ++ + P F++G+A L L G AI + A+ P+ +
Sbjct: 94 LAVPLLIKVAEANPINFNVRFRLGVA-LDNL-GRFD-----EAIDSFKIALGLRPNEGKV 146
Query: 525 HNLYGLVCEARSDYQAAVVSYRLA 548
H E ++ A+ ++ A
Sbjct: 147 HRAIAFSYEQMGRHEEALPHFKKA 170
|
| >3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 | Back alignment and structure |
|---|
Score = 77.5 bits (190), Expect = 1e-14
Identities = 28/173 (16%), Positives = 59/173 (34%), Gaps = 2/173 (1%)
Query: 17 ANPDDPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQR 76
+ P +L E +E A + A ++ P+ A A L + Q
Sbjct: 4 SCPTHADSLNNLANIKREQGNIEE-AVRLYRKALEVFPEFAAAHSNLASVLQQQG-KLQE 61
Query: 77 AIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQ 136
A+ Y+ A+ +SP + + + L+ + A +P A L +
Sbjct: 62 ALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIH 121
Query: 137 LHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIEL 189
EA+ S + A++ P P + L + ++ + + + +
Sbjct: 122 KDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSI 174
|
| >3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 | Back alignment and structure |
|---|
Score = 77.5 bits (190), Expect = 2e-14
Identities = 32/180 (17%), Positives = 71/180 (39%), Gaps = 1/180 (0%)
Query: 52 LNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLE 111
P +A + L + + + A++ Y++A+ + P+ + + L +L+ GK
Sbjct: 4 SCPTHADSLNNLANIKREQG-NIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEA 62
Query: 112 VVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYH 171
++ +EA SP A+ +G + A+Q AI+ P L +
Sbjct: 63 LMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHK 122
Query: 172 RLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAH 231
G AI SY A++L + ++ ++ E+ + + I ++ + +
Sbjct: 123 DSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQLEKN 182
|
| >3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 | Back alignment and structure |
|---|
Score = 72.5 bits (177), Expect = 6e-13
Identities = 23/117 (19%), Positives = 42/117 (35%)
Query: 122 SPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIK 181
P + L ++ EAV+ + A+ +P L + G A+
Sbjct: 5 CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALM 64
Query: 182 SYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLASGL 238
Y AI + T GN + + + ++ + A++I+ AH LAS
Sbjct: 65 HYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIH 121
|
| >3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 | Back alignment and structure |
|---|
Score = 69.1 bits (168), Expect = 6e-12
Identities = 33/176 (18%), Positives = 68/176 (38%), Gaps = 3/176 (1%)
Query: 11 LEDSLEANPDDPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRF 70
+LE P+ + H +L L + + +E A H+ A +++P A A+ +G+
Sbjct: 32 YRKALEVFPEFAAAHSNLASVLQQQGKLQE-ALMHYKEAIRISPTFADAYSNMGNTLKEM 90
Query: 71 SIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFR 130
D Q A++CY RA+ ++P + + L + + G + R A P A+
Sbjct: 91 Q-DVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYC 149
Query: 131 RLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRA 186
L + W++ + ++ + + H M + +A
Sbjct: 150 NLAHCLQIVCDWTDYDERMKKLVSIVADQLEKNRLPSVHPH-HSMLYPLSHGFRKA 204
|
| >3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 | Back alignment and structure |
|---|
Score = 60.6 bits (146), Expect = 3e-09
Identities = 38/210 (18%), Positives = 74/210 (35%), Gaps = 13/210 (6%)
Query: 418 ADAWAHIGKLYGEVGEKKLARQAFDSARSIDPSLALPWAGMSADVQASESLVDDAFESCL 477
AD+ ++ + E G + A + + A + P A + + A V + + +A
Sbjct: 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNL-ASVLQQQGKLQEALMHYK 67
Query: 478 RAVQILP-LAEFQIGLAKLAKLSGHLSSSQVFGAIQQAIQRGPHYPESHNLYGLVCEARS 536
A++I P A+ + K + + +AIQ P + ++H+ + +
Sbjct: 68 EAIRISPTFADAYSNMGNTLKEMQDVQGAL--QCYTRAIQINPAFADAHSNLASIHKDSG 125
Query: 537 DYQAAVVSYRLARYAISSSSGTVPNSHFQDISINLARSLSRAGNALDAVRECESLERQGM 596
+ A+ SYR A F D NLA L + D + L
Sbjct: 126 NIPEAIASYRTALKL---------KPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVA 176
Query: 597 LDAEVLQVYAFSLWQLGKYDLALSMARNLA 626
E ++ + Y L+ + +A
Sbjct: 177 DQLEKNRLPSVHPHHSMLYPLSHGFRKAIA 206
|
| >3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 | Back alignment and structure |
|---|
Score = 48.3 bits (114), Expect = 1e-05
Identities = 36/184 (19%), Positives = 70/184 (38%), Gaps = 12/184 (6%)
Query: 470 DDAFESCLRAVQILP-LAEFQIGLAKLAKLSGHLSSSQVFGAIQQAIQRGPHYPESHNLY 528
++A +A+++ P A LA + + G L + + ++AI+ P + ++++
Sbjct: 26 EEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALM--HYKEAIRISPTFADAYSNM 83
Query: 529 GLVCEARSDYQAAVVSYRLARYAISSSSGTVPNSHFQDISINLARSLSRAGNALDAVREC 588
G + D Q A+ Y A N F D NLA +GN +A+
Sbjct: 84 GNTLKEMQDVQGALQCYTRA---------IQINPAFADAHSNLASIHKDSGNIPEAIASY 134
Query: 589 ESLERQGMLDAEVLQVYAFSLWQLGKYDLALSMARNLASSVSAMEQSSAAASVSFICRLL 648
+ + + A L + + + L S V+ + + SV +L
Sbjct: 135 RTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQLEKNRLPSVHPHHSML 194
Query: 649 YHIS 652
Y +S
Sbjct: 195 YPLS 198
|
| >3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 | Back alignment and structure |
|---|
Score = 46.3 bits (109), Expect = 6e-05
Identities = 30/159 (18%), Positives = 60/159 (37%), Gaps = 15/159 (9%)
Query: 329 SSYQRALYLAPWQANIYTDIAITSDLIYSLNEAYGHYQSAWHVSEKMALGALLLEGDNCQ 388
Y++AL + P A ++++A L EA HY+ A+ +
Sbjct: 30 RLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYK-----------EAIRISPTFAD 78
Query: 389 FWVTLGCLSNYNGLKQHAL---IRGLQLDVSLADAWAHIGKLYGEVGEKKLARQAFDSAR 445
+ +G Q AL R +Q++ + ADA +++ ++ + G A ++ +A
Sbjct: 79 AYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTAL 138
Query: 446 SIDPSLALPWAGMSADVQASESLVDDAFESCLRAVQILP 484
+ P + + A D E + V I+
Sbjct: 139 KLKPDFPDAYCNL-AHCLQIVCDWTDYDERMKKLVSIVA 176
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 73.7 bits (181), Expect = 2e-13
Identities = 38/189 (20%), Positives = 62/189 (32%)
Query: 73 DTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRL 132
D R + + AV P D V+ L + G + + + P A RL
Sbjct: 4 DGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARL 63
Query: 133 GYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDT 192
G ++ ++ +EA LQ A P P + LG A G AA +Y RA +L
Sbjct: 64 GRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPE 123
Query: 193 SIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLASGLLGLAKQCINLGAFR 252
+ + N L ++R ++ V A A + A
Sbjct: 124 EPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGAVEPFAFLSEDASAAEQLACART 183
Query: 253 WGASLLEDA 261
++
Sbjct: 184 RAQAIAASV 192
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 61.4 bits (149), Expect = 1e-09
Identities = 28/194 (14%), Positives = 46/194 (23%), Gaps = 39/194 (20%)
Query: 8 LLQLEDSLEANPDDPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYY 67
LLQL ++ P D L L ++ L+P + A LG
Sbjct: 9 LLQLRAAVRHRPQDFVAWLMLADAELGMGDTTA-GEMAVQRGLALHPGHPEAVARLGRVR 67
Query: 68 TRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFW 127
A Q+A +P+
Sbjct: 68 WTQQ-RHAEAAVLLQQASDAAPEHPG---------------------------------- 92
Query: 128 AFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLG---MFSAAIKSYG 184
LG+ + A + A + P P++ L RL
Sbjct: 93 IALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVR 152
Query: 185 RAIELDDTSIFPLL 198
A+ ++ P
Sbjct: 153 AAVAQGVGAVEPFA 166
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 56.8 bits (137), Expect = 3e-08
Identities = 29/174 (16%), Positives = 54/174 (31%), Gaps = 4/174 (2%)
Query: 406 ALIRGLQLDVSLADAWAHIGKLYGEVGEKKLARQAFDSARSIDPSLALPWAGMSADVQAS 465
L ++ AW + +G+ A ++ P A + V+ +
Sbjct: 11 QLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARL-GRVRWT 69
Query: 466 ESLVDDAFESCLRAVQILP-LAEFQIGLAKLAKLSGHLSSSQVFGAIQQAIQRGPHYPES 524
+ +A +A P + L + +G ++ A +A Q P P
Sbjct: 70 QQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAA--AYTRAHQLLPEEPYI 127
Query: 525 HNLYGLVCEARSDYQAAVVSYRLARYAISSSSGTVPNSHFQDISINLARSLSRA 578
D++A V R A++ G V F + A L+ A
Sbjct: 128 TAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGAVEPFAFLSEDASAAEQLACA 181
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 55.6 bits (134), Expect = 8e-08
Identities = 20/118 (16%), Positives = 36/118 (30%), Gaps = 4/118 (3%)
Query: 432 GEKKLARQAFDSARSIDPSLALPWAGMSADVQASESLVDDAFESCLRAVQILP-LAEFQI 490
+ +A P + W + AD + + R + + P E
Sbjct: 3 ADGPRELLQLRAAVRHRPQDFVAWLML-ADAELGMGDTTAGEMAVQRGLALHPGHPEAVA 61
Query: 491 GLAKLAKLSGHLSSSQVFGAIQQAIQRGPHYPESHNLYGLVCEARSDYQAAVVSYRLA 548
L ++ + + +QQA P +P G E +AA +Y A
Sbjct: 62 RLGRVRWTQQRHA--EAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRA 117
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 48.7 bits (116), Expect = 1e-05
Identities = 16/132 (12%), Positives = 32/132 (24%), Gaps = 14/132 (10%)
Query: 330 SYQRALYLAPWQANIYTDIAITSDLIYSLNEAYGHYQSAWHVSEKMALGALLLEGDNCQF 389
+ A+ P + +A + Q L L + +
Sbjct: 11 QLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRG-----------LALHPGHPEA 59
Query: 390 WVTLGCLSNYNGL---KQHALIRGLQLDVSLADAWAHIGKLYGEVGEKKLARQAFDSARS 446
LG + L + +G + G+ + A A+ A
Sbjct: 60 VARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQ 119
Query: 447 IDPSLALPWAGM 458
+ P A +
Sbjct: 120 LLPEEPYITAQL 131
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 44.1 bits (104), Expect = 3e-04
Identities = 16/113 (14%), Positives = 29/113 (25%), Gaps = 7/113 (6%)
Query: 174 GMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYG 233
+ A+ L + L +G+ G Q L + + A
Sbjct: 3 ADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVAR 62
Query: 234 LASGLLGLAKQCINLGAFRWGASLLEDACKVAEANTRLAGNMSCIWKLHGDIQ 286
L A LL+ A A + +A + + G +
Sbjct: 63 LGR-------VRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAE 108
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Length = 382 | Back alignment and structure |
|---|
Score = 67.4 bits (164), Expect = 8e-12
Identities = 34/260 (13%), Positives = 84/260 (32%), Gaps = 19/260 (7%)
Query: 3 EKGALLLQLEDSLEANPDDPSLHLDLGLHLWENSESKEKA-AEHFVIAAKLNPQNAVAFR 61
E G + D + D PS L W + + + + V+ + + +
Sbjct: 42 EAGEAVASPMDDGFVSLDSPSYVLYRDRAEWADIDPVPQNDGPNPVVQIIYSDKFRDVYD 101
Query: 62 YLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVS----GEALCELLEHGGKESLEVVVCRE 117
Y R ++RA K + A+ L+ + L L + E +
Sbjct: 102 YFRAVLQR-DERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDL-HEEMNY--ITA 157
Query: 118 ASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFS 177
++ P+ + + L + S+ ++ + + + H W+ ++
Sbjct: 158 IIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWD 217
Query: 178 AAIKSYGRAIELD--DTSIF----PLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAH 231
++ + ++ D + S++ ++ + + + V+ +K+ N SA
Sbjct: 218 NELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAW 277
Query: 232 YG----LASGLLGLAKQCIN 247
L L +N
Sbjct: 278 NYLKGILQDRGLSKYPNLLN 297
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121 | Back alignment and structure |
|---|
Score = 61.3 bits (149), Expect = 2e-11
Identities = 17/92 (18%), Positives = 25/92 (27%)
Query: 132 LGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDD 191
G L +EA + + + P W +LGL AI + A LD
Sbjct: 23 EGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP 82
Query: 192 TSIFPLLESGNIFLMLGNFRKGVEQFQLALKI 223
I N + + L
Sbjct: 83 KDIAVHAALAVSHTNEHNANAALASLRAWLLS 114
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121 | Back alignment and structure |
|---|
Score = 57.1 bits (138), Expect = 7e-10
Identities = 18/90 (20%), Positives = 33/90 (36%)
Query: 101 LLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSP 160
+ + + K P A+R LG Q ++K A+ +L HA P
Sbjct: 26 SMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDI 85
Query: 161 HLWEALGLAYHRLGMFSAAIKSYGRAIELD 190
+ AL +++ +AA+ S +
Sbjct: 86 AVHAALAVSHTNEHNANAALASLRAWLLSQ 115
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121 | Back alignment and structure |
|---|
Score = 52.1 bits (125), Expect = 4e-08
Identities = 25/148 (16%), Positives = 39/148 (26%), Gaps = 37/148 (25%)
Query: 16 EANP-DDPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDT 74
NP ++ GL + + + E AA F + P+ A+R LG +
Sbjct: 10 ANNPYMYHENPMEEGLSMLKLANLAE-AALAFEAVCQKEPEREEAWRSLGLTQAE-NEKD 67
Query: 75 QRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGY 134
AI A L P D L
Sbjct: 68 GLAIIALNHARMLDPKDI----------------------------------AVHAALAV 93
Query: 135 LQLHHKKWSEAVQSLQHAIRGYPTSPHL 162
+ + A+ SL+ + P L
Sbjct: 94 SHTNEHNANAALASLRAWLLSQPQYEQL 121
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121 | Back alignment and structure |
|---|
Score = 51.7 bits (124), Expect = 4e-08
Identities = 21/98 (21%), Positives = 34/98 (34%), Gaps = 12/98 (12%)
Query: 3 EKGALLLQLEDSLEA----------NPDDPSLHLDLGLHLWENSESKEKAAEHFVIAAKL 52
E+G +L+L + EA P+ LGL EN E A A L
Sbjct: 22 EEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAEN-EKDGLAIIALNHARML 80
Query: 53 NPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPD 90
+P++ L +T + A+ + + P
Sbjct: 81 DPKDIAVHAALAVSHTNEH-NANAALASLRAWLLSQPQ 117
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121 | Back alignment and structure |
|---|
Score = 49.8 bits (119), Expect = 2e-07
Identities = 9/77 (11%), Positives = 22/77 (28%)
Query: 163 WEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALK 222
GL+ +L + A ++ + + G + A
Sbjct: 20 PMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARM 79
Query: 223 ISSENVSAHYGLASGLL 239
+ ++++ H LA
Sbjct: 80 LDPKDIAVHAALAVSHT 96
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121 | Back alignment and structure |
|---|
Score = 45.1 bits (107), Expect = 9e-06
Identities = 20/102 (19%), Positives = 33/102 (32%), Gaps = 4/102 (3%)
Query: 386 NCQFWVTLGCLSNYNGLKQHALI---RGLQLDVSLADAWAHIGKLYGEVGEKKLARQAFD 442
+ + G A + Q + +AW +G E + LA A +
Sbjct: 16 YHENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALN 75
Query: 443 SARSIDPSLALPWAGMSADVQASESLVDDAFESCLRAVQILP 484
AR +DP A + A +E + A S + P
Sbjct: 76 HARMLDPKDIAVHAAL-AVSHTNEHNANAALASLRAWLLSQP 116
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177 | Back alignment and structure |
|---|
Score = 61.4 bits (149), Expect = 7e-11
Identities = 20/98 (20%), Positives = 37/98 (37%), Gaps = 3/98 (3%)
Query: 141 KWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLES 200
+Q+LQ IR P + W LG Y +S ++ +Y +A++L +
Sbjct: 25 NPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAAL 84
Query: 201 GNIFLMLGN---FRKGVEQFQLALKISSENVSAHYGLA 235
+ + + AL + S ++A LA
Sbjct: 85 ATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLA 122
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177 | Back alignment and structure |
|---|
Score = 59.5 bits (144), Expect = 3e-10
Identities = 25/166 (15%), Positives = 55/166 (33%), Gaps = 34/166 (20%)
Query: 37 ESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGE 96
++ E + + NPQN+ + LG YY + D ++ Y++A+ L +++ E
Sbjct: 24 QNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQN-DYSNSLLAYRQALQLRGENA---E 79
Query: 97 ALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGY 156
L + Y Q ++ + A+
Sbjct: 80 LYAALAT----------------------------VLYYQASQHMTAQTRAMIDKALALD 111
Query: 157 PTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELD--DTSIFPLLES 200
L ++ AI+ + + ++L+ + L+ES
Sbjct: 112 SNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQLVES 157
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177 | Back alignment and structure |
|---|
Score = 53.3 bits (128), Expect = 4e-08
Identities = 23/132 (17%), Positives = 55/132 (41%), Gaps = 5/132 (3%)
Query: 116 REASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLG- 174
++ +P+ + LG L +S ++ + + A++ + L+ AL +
Sbjct: 34 QDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQAS 93
Query: 175 --MFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHY 232
M + +A+ LD I L+ + M N+ + +E +Q + ++S ++
Sbjct: 94 QHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQ 153
Query: 233 GLASGLLGLAKQ 244
+ S + +AK
Sbjct: 154 LVES--INMAKL 163
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177 | Back alignment and structure |
|---|
Score = 49.5 bits (118), Expect = 1e-06
Identities = 19/88 (21%), Positives = 36/88 (40%), Gaps = 3/88 (3%)
Query: 6 ALLLQLEDSLEANPDDPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLG- 64
A L L+D + ANP + LG + ++ + + A +L +NA + L
Sbjct: 28 AQLQALQDKIRANPQNSEQWALLGEYYLWQNDY-SNSLLAYRQALQLRGENAELYAALAT 86
Query: 65 -HYYTRFSIDTQRAIKCYQRAVSLSPDD 91
YY T + +A++L ++
Sbjct: 87 VLYYQASQHMTAQTRAMIDKALALDSNE 114
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177 | Back alignment and structure |
|---|
Score = 48.7 bits (116), Expect = 2e-06
Identities = 12/84 (14%), Positives = 28/84 (33%), Gaps = 3/84 (3%)
Query: 11 LEDSLEANPDDPSLHLDLG--LHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYT 68
+L+ ++ L+ L L+ + + A L+ A L
Sbjct: 67 YRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAF 126
Query: 69 RFSIDTQRAIKCYQRAVSLSPDDS 92
+ +AI+ +Q+ + L+
Sbjct: 127 M-QANYAQAIELWQKVMDLNSPRI 149
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177 | Back alignment and structure |
|---|
Score = 44.9 bits (106), Expect = 3e-05
Identities = 27/177 (15%), Positives = 58/177 (32%), Gaps = 41/177 (23%)
Query: 406 ALIRGLQLDVSLADAWAHIGKLYGEVGEKKLARQAFDSARSIDPSLALPWAGMSADVQAS 465
AL ++ + ++ WA +G+ Y + + A+ A + A +A + A V
Sbjct: 32 ALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAAL-ATV--- 87
Query: 466 ESLVDDAFESCLRAVQILPLAEFQIGLAKLAKLSGHLSSSQVFGAIQQAIQRGPHYPESH 525
L + ++Q I +A+ + +
Sbjct: 88 -----------------------------LYYQASQHMTAQTRAMIDKALALDSNEITAL 118
Query: 526 NLYGLVCEARSDYQAAVVSYRLARYAISSSSGTVPNSHFQDI--SINLARSLSRAGN 580
L +++Y A+ ++ S P + + SIN+A+ L R +
Sbjct: 119 MLLASDAFMQANYAQAIELWQKVMDLNS------PRINRTQLVESINMAKLLQRRSD 169
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115 | Back alignment and structure |
|---|
Score = 58.9 bits (143), Expect = 1e-10
Identities = 14/89 (15%), Positives = 26/89 (29%)
Query: 143 SEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGN 202
+ L+ + + L LG Y F AA+ A++ D T G
Sbjct: 2 QAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGK 61
Query: 203 IFLMLGNFRKGVEQFQLALKISSENVSAH 231
G+ + ++ L +
Sbjct: 62 TLQGQGDRAGARQAWESGLAAAQSRGDQQ 90
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115 | Back alignment and structure |
|---|
Score = 57.0 bits (138), Expect = 5e-10
Identities = 22/102 (21%), Positives = 40/102 (39%), Gaps = 4/102 (3%)
Query: 10 QLEDSLEANPDDPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTR 69
+LE L D+ L LG E+ + + A H A +P +VA+++LG
Sbjct: 7 RLEAMLAQGTDNMLLRFTLGKTYAEHEQF-DAALPHLRAALDFDPTYSVAWKWLGKTLQG 65
Query: 70 FSIDTQRAIKCYQRAVSLSPD--DSVSGEALCELLEHGGKES 109
D A + ++ ++ + D + L L +E
Sbjct: 66 QG-DRAGARQAWESGLAAAQSRGDQQVVKELQVFLRRLARED 106
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115 | Back alignment and structure |
|---|
Score = 52.3 bits (126), Expect = 3e-08
Identities = 14/114 (12%), Positives = 32/114 (28%), Gaps = 34/114 (29%)
Query: 77 AIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQ 136
+ + ++ D+ + LG
Sbjct: 4 ITERLEAMLAQGTDNML----------------------------------LRFTLGKTY 29
Query: 137 LHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELD 190
H+++ A+ L+ A+ PT W+ LG G + A +++ +
Sbjct: 30 AEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAA 83
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115 | Back alignment and structure |
|---|
Score = 42.3 bits (100), Expect = 8e-05
Identities = 18/146 (12%), Positives = 34/146 (23%), Gaps = 37/146 (25%)
Query: 40 EKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALC 99
+ E N + LG Y A+ + A+ P S
Sbjct: 2 QAITERLEAMLAQGTDNMLLRFTLGKTYAEHE-QFDAALPHLRAALDFDPTYS------- 53
Query: 100 ELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPT- 158
A++ LG + A Q+ + + +
Sbjct: 54 ---------------------------VAWKWLGKTLQGQGDRAGARQAWESGLAAAQSR 86
Query: 159 -SPHLWEALGLAYHRLGMFSAAIKSY 183
+ + L + RL A +
Sbjct: 87 GDQQVVKELQVFLRRLAREDALEHHH 112
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291 | Back alignment and structure |
|---|
Score = 62.5 bits (151), Expect = 2e-10
Identities = 29/215 (13%), Positives = 64/215 (29%), Gaps = 9/215 (4%)
Query: 11 LEDSLEANPDDPSLHLDLGLHLWENSESKEKAAEH-FVIAAKLNPQNAVAFRYLGHYYTR 69
L++ ++ + +L +S AE ++ ++ N Y
Sbjct: 54 LDEIKPSSAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFY 113
Query: 70 FSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAF 129
+ A++ + SL ++L + L ++ D+ A
Sbjct: 114 DQ-NPDAALRTLHQGDSLECM-----AMTVQILLKLDRLDLARKELKKMQDQDEDATLTQ 167
Query: 130 RRLGYLQLHH--KKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAI 187
++ L +K +A Q + L + G + AA A+
Sbjct: 168 LATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEAL 227
Query: 188 ELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALK 222
+ D L+ + LG + ++ LK
Sbjct: 228 DKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLK 262
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291 | Back alignment and structure |
|---|
Score = 54.0 bits (129), Expect = 9e-08
Identities = 28/185 (15%), Positives = 49/185 (26%), Gaps = 17/185 (9%)
Query: 62 YLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDK 121
Y+G Y Q+ I QR SP+ V + ++ V+ E
Sbjct: 11 YIGSY--------QQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVL--DEIKPS 60
Query: 122 SPRAFWAFRRLGYLQLHHKKWSEAVQSLQH--AIRGYPTSPHLWEALGLAYHRLGMFSAA 179
S A R H + V L + T+ Y AA
Sbjct: 61 SAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAA 120
Query: 180 IKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLASGLL 239
+++ + L + + I L L ++ + + A L
Sbjct: 121 LRTLHQGDSL-----ECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSL 175
Query: 240 GLAKQ 244
+
Sbjct: 176 AAGGE 180
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131 | Back alignment and structure |
|---|
Score = 58.8 bits (143), Expect = 2e-10
Identities = 24/119 (20%), Positives = 45/119 (37%)
Query: 117 EASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMF 176
S++ + G Q+ + + AV AI P + + AY +LG +
Sbjct: 3 LGSEEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNY 62
Query: 177 SAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLA 235
+ A++ RAI +D G L + V ++ AL++ +N + L
Sbjct: 63 AGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLK 121
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131 | Back alignment and structure |
|---|
Score = 46.1 bits (110), Expect = 6e-06
Identities = 25/131 (19%), Positives = 51/131 (38%), Gaps = 11/131 (8%)
Query: 49 AAKLNPQNAVAFRYLGHYYTRFSI-DTQRAIKCYQRAVSLSPDDSVS----GEALCELLE 103
++ + A + G + + + + A+ Y +A+ L+P ++V A +L
Sbjct: 4 GSEEDSAEAERLKTEG--NEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGN 61
Query: 104 HGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLW 163
+ +++ C A P A+ R+G K EAV + A+ P +
Sbjct: 62 Y--AGAVQD--CERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYK 117
Query: 164 EALGLAYHRLG 174
L +A +L
Sbjct: 118 SNLKIAELKLR 128
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131 | Back alignment and structure |
|---|
Score = 45.7 bits (109), Expect = 6e-06
Identities = 20/79 (25%), Positives = 33/79 (41%), Gaps = 4/79 (5%)
Query: 167 GLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLES--GNIFLMLGNFRKGVEQFQLALKIS 224
G ++ F AA+ YG+AIEL+ + + LGN+ V+ + A+ I
Sbjct: 19 GNEQMKVENFEAAVHFYGKAIELNPA--NAVYFCNRAAAYSKLGNYAGAVQDCERAICID 76
Query: 225 SENVSAHYGLASGLLGLAK 243
A+ + L L K
Sbjct: 77 PAYSKAYGRMGLALSSLNK 95
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Length = 372 | Back alignment and structure |
|---|
Score = 62.0 bits (150), Expect = 5e-10
Identities = 27/156 (17%), Positives = 46/156 (29%), Gaps = 15/156 (9%)
Query: 49 AAKLNPQNAVAFRYLG---HYYTRFSIDT-QRAIKCYQRAVSLSPDDSV--SGEALCELL 102
K+ P Y + RA + V SP+ + + +AL +++
Sbjct: 186 LQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIV 245
Query: 103 EHGGKESLEVVVCR--------EASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIR 154
H E + + ++ L K E+ Q++ I
Sbjct: 246 RHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGID 305
Query: 155 GYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELD 190
S + LG Y GM A +Y A L
Sbjct: 306 LEM-SWLNYVLLGKVYEMKGMNREAADAYLTAFNLR 340
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Length = 372 | Back alignment and structure |
|---|
Score = 47.8 bits (113), Expect = 1e-05
Identities = 10/81 (12%), Positives = 27/81 (33%), Gaps = 3/81 (3%)
Query: 13 DSLEANPDDPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSI 72
+L + ++ + ++ +++ + L + + + LG Y
Sbjct: 268 VTLPELNNLSIIYQIKAVSALVKGKT-DESYQAINTGIDLEM-SWLNYVLLGKVY-EMKG 324
Query: 73 DTQRAIKCYQRAVSLSPDDSV 93
+ A Y A +L P +
Sbjct: 325 MNREAADAYLTAFNLRPGANT 345
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Length = 372 | Back alignment and structure |
|---|
Score = 45.1 bits (106), Expect = 1e-04
Identities = 21/175 (12%), Positives = 44/175 (25%), Gaps = 14/175 (8%)
Query: 10 QLEDSLEANPDDPSL--HLDLGLHLWENS--ESKEKAAEHFVIAAKLNPQNAVAFRYLGH 65
E + P +L + + +S +A+E + +P+ A
Sbjct: 182 MQETLQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKAL 241
Query: 66 YYTRFSI-------DTQRAIKCYQRAVSLSPDDSVSG--EALCELLEHGGKESLEVVVCR 116
V+L +++S + GK
Sbjct: 242 VDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAIN 301
Query: 117 EASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYH 171
D ++ + LG + EA + A P + L+ +
Sbjct: 302 TGIDLEM-SWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANTLYWIENGIFQ 355
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 62.2 bits (150), Expect = 9e-10
Identities = 89/612 (14%), Positives = 178/612 (29%), Gaps = 154/612 (25%)
Query: 1 DDEKGALLLQLEDSLEANPDDPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAF 60
D K L + D + + D S L L W +E+ + FV L +
Sbjct: 40 DMPKSILSKEEIDHIIMSKDAVSGTLRL---FWTLLSKQEEMVQKFVEEV-LRIN----Y 91
Query: 61 RYLGHYYTRFSIDTQRAIKCY-------QRAVSLSPDDSVS--------GEALCEL---- 101
++L + Y + +VS +AL EL
Sbjct: 92 KFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAK 151
Query: 102 --LEHG----GKESLEVVVCREAS--DKSP-RAFWAFRRLGY-------LQLHHKKWSEA 145
L G GK + + VC K + FW L L++ K +
Sbjct: 152 NVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWL--NLKNCNSPETVLEMLQKLLYQI 209
Query: 146 VQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRA-IELDDTSIFPLLESGNI- 203
+ ++ RL + S K Y + L + + N+
Sbjct: 210 DPNWTSRSDHSSNIKLRIHSIQAELRRL-LKS---KPYENCLLVLLNVQNAKAWNAFNLS 265
Query: 204 --FLM------LGNFRKGVEQFQLALKISSENVSAHYGLASGLLGLAKQCINLGAFRWGA 255
L+ + +F ++L S ++ L L K ++
Sbjct: 266 CKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVK--SL--LLK-YLDCRPQ---- 316
Query: 256 SLLEDACKVAEANTRLAG----NMSCIW---------KLHGDIQLTYAKCFPWAEERQSL 302
L + + + W KL I+ + P AE R+
Sbjct: 317 DLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEP-AEYRKMF 375
Query: 303 EFDVETFSASI-VSWKTTCLMAAISSKSSYQRALYLAPWQANIYTDI-AITSDLI-YSL- 358
+ + F S + L+ W I +D+ + + L YSL
Sbjct: 376 D-RLSVFPPSAHIPTILLSLI-----------------WFDVIKSDVMVVVNKLHKYSLV 417
Query: 359 -----NEAYG----HYQSAWHVSEKMALGALLLEGDN-----CQFWVTLGCLSNY--NGL 402
+ + + + AL +++ N + L Y + +
Sbjct: 418 EKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHI 477
Query: 403 KQHALIRGLQLDVSLADAWAHIGKLYGEVG--EKKLARQ--AFDSARSIDPSLALPWAGM 458
H ++ + ++ + E+K+ A++++ SI +L
Sbjct: 478 GHHL------KNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTL------- 524
Query: 459 SADVQASESLV---DDAFESCLRAVQILPLAEFQIGLAKLAKLSGHLSSSQVFGAIQQAI 515
++ + + D +E + A + +F L K+ +L S+ ++ A+
Sbjct: 525 -QQLKFYKPYICDNDPKYERLVNA-----ILDF------LPKIEENLICSKYTDLLRIAL 572
Query: 516 Q--RGPHYPESH 525
+ E+H
Sbjct: 573 MAEDEAIFEEAH 584
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 50.6 bits (120), Expect = 3e-06
Identities = 93/647 (14%), Positives = 200/647 (30%), Gaps = 162/647 (25%)
Query: 465 SESLVDDAFESCLRAVQILPLAEFQIGLAKLAKLSGHLSSSQVFGAIQQAIQRGPHYPES 524
S+ +D S L L F L+K V +++ ++ +Y
Sbjct: 47 SKEEIDHIIMSKDAVSGTLRL--FWTLLSK--------QEEMVQKFVEEVLR--INYKFL 94
Query: 525 HNLYGLVCEARSDYQAAVVSYRLARYAISSSSGTVPNSHFQDISINLARSLSRAGNALDA 584
+ S + R Y N F +++ + + AL
Sbjct: 95 MSPIKTEQRQPSMMTRMYIEQRDRLYND--------NQVFAKYNVSRLQPYLKLRQALLE 146
Query: 585 VRECESLERQGMLDAEVLQVYAFSLWQLGKYDLALSMARNLASSVSAMEQSSAAASVSFI 644
+R +++ G+L + GK +AL + +
Sbjct: 147 LRPAKNVLIDGVLGS-------------GKTWVALDVCLSY----------------KVQ 177
Query: 645 CRLLYHI----SGLDSTINSILKMPKGLFQCSKMSFIVSAIHALDHSNRLESVVSSSRNC 700
C++ + I ++ ++L+M + L ++ + H+ + R+ S+ + R
Sbjct: 178 CKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRL 237
Query: 701 IASPEEITGMHYLVALNKL--VKNGPESCLGFNSGIFHLRKVLHVYPNCNLIRNLLG--- 755
+ S Y L L V+N ++ FN K+L + L
Sbjct: 238 LKSKP------YENCLLVLLNVQN-AKAWNAFNLSC----KILLTTRFKQVTDFLSAATT 286
Query: 756 -YLLLSSDEWRYSHVASRCCSLETSDCIKKEGPKSAWEILGAEGVACNVIGSVDLKFSFP 814
++ L + + L+ DC ++ P+ E+L ++I ++
Sbjct: 287 THISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPR---EVLTTNPRRLSIIAES-IR-DGL 341
Query: 815 TCI--YEHLTGPKAVQELQKCL-HREPWNYNVRYLL-------------VLNLLQKAREE 858
++H+ K ++ L EP Y + +L+L+ +
Sbjct: 342 ATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIK 401
Query: 859 RFPRHLCTILQRLIHVAL----SCEF-YSIQHTSYQYQKFQLLLCASEISLQGGNITGCI 913
++ +L +L E SI + Y K + +E +L
Sbjct: 402 SDVMV---VVNKLHKYSLVEKQPKESTISI-PSIYLELKVK---LENEYAL--------- 445
Query: 914 NHAKSASALLLPDAYRFFGHLLLSRAYAAEGNMLNLQDEYV---------------RCLE 958
H + D Y + + + ++ + D+Y R
Sbjct: 446 -HRS------IVDHYN------IPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTL 492
Query: 959 LKTDYV-IGWMCLKVVESLYEVQAD---TNTI-ELSFNE---CLKQGNNSRLIWTAKFNL 1010
+ ++ ++ K+ A NT+ +L F + C RL+ N
Sbjct: 493 FRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLV-----NA 547
Query: 1011 VLGFVFLWKKDFFSAE-KCLAQACSLAGAESCLFLCHGTICMEIARQ 1056
+L F+ +++ ++ L + +A L I E +Q
Sbjct: 548 ILDFLPKIEENLICSKYTDLLR---IA-----LMAEDEAIFEEAHKQ 586
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Length = 137 | Back alignment and structure |
|---|
Score = 56.9 bits (138), Expect = 1e-09
Identities = 23/105 (21%), Positives = 40/105 (38%)
Query: 140 KKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLE 199
+K+ EA AI P + L Y ++ A+ RA+ELD S+
Sbjct: 23 RKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFF 82
Query: 200 SGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLASGLLGLAKQ 244
G L + ++ + + Q A ++ E L +AK+
Sbjct: 83 LGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKK 127
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213 | Back alignment and structure |
|---|
Score = 58.2 bits (141), Expect = 2e-09
Identities = 24/190 (12%), Positives = 50/190 (26%), Gaps = 59/190 (31%)
Query: 40 EKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALC 99
+ A + F + + ++ +G YT + A K + R+++ +V
Sbjct: 23 KGALDAF---SAVQDPHSRICFNIGCMYTILK-NMTEAEKAFTRSINRDKHLAV------ 72
Query: 100 ELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAI------ 153
A+ + G L +K+ A++ L+ A+
Sbjct: 73 ----------------------------AYFQRGMLYYQTEKYDLAIKDLKEALIQLRGN 104
Query: 154 -------RGYPTSPHLWEAL---GLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNI 203
G E L Y + + A + A + I
Sbjct: 105 QLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK-----SEPRHSKI 159
Query: 204 FLMLGNFRKG 213
+ K
Sbjct: 160 DKAMECVWKQ 169
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213 | Back alignment and structure |
|---|
Score = 56.6 bits (137), Expect = 6e-09
Identities = 28/162 (17%), Positives = 51/162 (31%), Gaps = 18/162 (11%)
Query: 132 LGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDD 191
G L K W A+ + + +G Y L + A K++ R+I D
Sbjct: 12 EGVLAADKKDWKGALDAFSAVQ---DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDK 68
Query: 192 TSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHY---GLASGL--------LG 240
+ G ++ + ++ + AL N Y GL L +
Sbjct: 69 HLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIA 128
Query: 241 LAKQCINLGAFRWGASLLEDA--CKVAEANTRLAGNMSCIWK 280
++ L A K ++++ M C+WK
Sbjct: 129 FMYA--KKEEWKKAEEQLALATSMKSEPRHSKIDKAMECVWK 168
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213 | Back alignment and structure |
|---|
Score = 52.4 bits (126), Expect = 1e-07
Identities = 25/132 (18%), Positives = 44/132 (33%), Gaps = 22/132 (16%)
Query: 132 LGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEA---LGLAYHRLGMFSAAIKSYGRAIE 188
+G + K +EA ++ +I HL A G+ Y++ + AIK A+
Sbjct: 43 IGCMYTILKNMTEAEKAFTRSIN---RDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALI 99
Query: 189 LDDTS----------IFPLLES------GNIFLMLGNFRKGVEQFQLALKISSENVSAHY 232
+ F L ++ ++K EQ LA + SE +
Sbjct: 100 QLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSKI 159
Query: 233 GLASGLLGLAKQ 244
A + K
Sbjct: 160 DKAMECVWKQKL 171
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136 | Back alignment and structure |
|---|
Score = 55.1 bits (134), Expect = 4e-09
Identities = 43/170 (25%), Positives = 68/170 (40%), Gaps = 42/170 (24%)
Query: 58 VAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCRE 117
A+ G Y AI+ YQ+A+ L P + EA L G
Sbjct: 9 NAYYKQGDY--------DEAIEYYQKALELDPRSA---EAWYNL---GN----------- 43
Query: 118 ASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFS 177
A+ + G EA++ Q A+ P S W LG AY++ G +
Sbjct: 44 ----------AYYKQGDYD-------EAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYD 86
Query: 178 AAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSEN 227
AI+ Y +A+ELD S GN + G++ + +E +Q AL++ +
Sbjct: 87 EAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 136
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136 | Back alignment and structure |
|---|
Score = 55.1 bits (134), Expect = 5e-09
Identities = 41/158 (25%), Positives = 65/158 (41%), Gaps = 49/158 (31%)
Query: 40 EKAAEHFVIAAKLNPQNA-------VAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDS 92
++A E++ A +L+P++A A+ G Y AI+ YQ+A+ L P +
Sbjct: 18 DEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDY--------DEAIEYYQKALELDPRSA 69
Query: 93 VSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHA 152
EA L G A+ + G EA++ Q A
Sbjct: 70 ---EAWYNL----G--------------------NAYYKQGDYD-------EAIEYYQKA 95
Query: 153 IRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELD 190
+ P S W LG AY++ G + AI+ Y +A+ELD
Sbjct: 96 LELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 133
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136 | Back alignment and structure |
|---|
Score = 54.7 bits (133), Expect = 5e-09
Identities = 31/105 (29%), Positives = 51/105 (48%), Gaps = 4/105 (3%)
Query: 132 LGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIEL-- 189
LG + EA++ Q A+ P S W LG AY++ G + AI+ Y +A+EL
Sbjct: 7 LGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 66
Query: 190 DDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGL 234
+ L GN + G++ + +E +Q AL++ + A Y L
Sbjct: 67 RSAEAWYNL--GNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNL 109
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136 | Back alignment and structure |
|---|
Score = 48.2 bits (116), Expect = 1e-06
Identities = 23/78 (29%), Positives = 39/78 (50%)
Query: 166 LGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISS 225
LG AY++ G + AI+ Y +A+ELD S GN + G++ + +E +Q AL++
Sbjct: 7 LGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 66
Query: 226 ENVSAHYGLASGLLGLAK 243
+ A Y L +
Sbjct: 67 RSAEAWYNLGNAYYKQGD 84
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136 | Back alignment and structure |
|---|
Score = 42.4 bits (101), Expect = 1e-04
Identities = 35/137 (25%), Positives = 58/137 (42%), Gaps = 14/137 (10%)
Query: 418 ADAWAHIGKLYGEVGEKKLARQAFDSARSIDPSLALPWAGMSADVQASESLVDDAFESCL 477
A+AW ++G Y + G+ A + + A +DP A W + D+A E
Sbjct: 1 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDY-DEAIEYYQ 59
Query: 478 RAVQILP-LAE--FQIGLAKLAKLSGHLSSSQVFGAI---QQAIQRGPHYPESHNLYGLV 531
+A+++ P AE + +G A K G AI Q+A++ P E+ G
Sbjct: 60 KALELDPRSAEAWYNLGNA-YYKQ-GDYD-----EAIEYYQKALELDPRSAEAWYNLGNA 112
Query: 532 CEARSDYQAAVVSYRLA 548
+ DY A+ Y+ A
Sbjct: 113 YYKQGDYDEAIEYYQKA 129
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136 | Back alignment and structure |
|---|
Score = 41.2 bits (98), Expect = 3e-04
Identities = 22/83 (26%), Positives = 37/83 (44%), Gaps = 16/83 (19%)
Query: 15 LEANPDDPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNA-------VAFRYLGHYY 67
LE +P +LG ++ + E A E++ A +L+P++A A+ G Y
Sbjct: 62 LELDPRSAEAWYNLGNAYYKQGDYDE-AIEYYQKALELDPRSAEAWYNLGNAYYKQGDY- 119
Query: 68 TRFSIDTQRAIKCYQRAVSLSPD 90
AI+ YQ+A+ L P
Sbjct: 120 -------DEAIEYYQKALELDPR 135
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133 | Back alignment and structure |
|---|
Score = 54.9 bits (133), Expect = 4e-09
Identities = 21/95 (22%), Positives = 38/95 (40%)
Query: 140 KKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLE 199
+ +A++ AI+ P L+ Y +L F A+K I+L+ T I
Sbjct: 30 GDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTR 89
Query: 200 SGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGL 234
+ ++ K ++ +Q AL + S A G
Sbjct: 90 KAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGY 124
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133 | Back alignment and structure |
|---|
Score = 42.6 bits (101), Expect = 8e-05
Identities = 25/148 (16%), Positives = 53/148 (35%), Gaps = 37/148 (25%)
Query: 44 EHFVIAAKLNPQNAVAFRYLG-HYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELL 102
H + +NP A+ + G + + D +A+K Y A+ +P D+
Sbjct: 3 HHHHHHSHMNPDLALMVKNKGNECFQKG--DYPQAMKHYTEAIKRNPKDAK--------- 51
Query: 103 EHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHL 162
++ R Y +L ++ A++ + I+ PT
Sbjct: 52 -----------------------LYSNRAACYTKL--LEFQLALKDCEECIQLEPTFIKG 86
Query: 163 WEALGLAYHRLGMFSAAIKSYGRAIELD 190
+ A + ++ A+ Y +A++LD
Sbjct: 87 YTRKAAALEAMKDYTKAMDVYQKALDLD 114
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281 | Back alignment and structure |
|---|
Score = 58.0 bits (140), Expect = 5e-09
Identities = 23/105 (21%), Positives = 40/105 (38%)
Query: 140 KKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLE 199
+K+ EA AI P + L Y ++ A+ RA+ELD S+
Sbjct: 18 RKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFF 77
Query: 200 SGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLASGLLGLAKQ 244
G L + ++ + + Q A ++ E L +AK+
Sbjct: 78 LGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKK 122
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117 | Back alignment and structure |
|---|
Score = 53.6 bits (129), Expect = 1e-08
Identities = 17/90 (18%), Positives = 32/90 (35%), Gaps = 3/90 (3%)
Query: 141 KWSEAVQSLQHAIRGYPTSPHLWEA---LGLAYHRLGMFSAAIKSYGRAIELDDTSIFPL 197
++AV + AI L E LG + LG + A ++
Sbjct: 5 LEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALR 64
Query: 198 LESGNIFLMLGNFRKGVEQFQLALKISSEN 227
+ + LG + +GVE + +S++
Sbjct: 65 VFYAMVLYNLGRYEQGVELLLKIIAETSDD 94
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117 | Back alignment and structure |
|---|
Score = 49.3 bits (118), Expect = 3e-07
Identities = 14/128 (10%), Positives = 34/128 (26%), Gaps = 39/128 (30%)
Query: 63 LGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKS 122
LG +A+ Y++A++
Sbjct: 3 LGLE--------AQAVPYYEKAIASGLQG------------------------------- 23
Query: 123 PRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKS 182
+ LG ++ +A L + ++ +P L + + LG + ++
Sbjct: 24 KDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVEL 83
Query: 183 YGRAIELD 190
+ I
Sbjct: 84 LLKIIAET 91
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164 | Back alignment and structure |
|---|
Score = 54.0 bits (130), Expect = 2e-08
Identities = 15/93 (16%), Positives = 31/93 (33%)
Query: 140 KKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLE 199
K++S+A+ A+ P +P AY G A + A +D
Sbjct: 25 KEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSR 84
Query: 200 SGNIFLMLGNFRKGVEQFQLALKISSENVSAHY 232
G + +++ E ++ ++ S
Sbjct: 85 LGLARFDMADYKGAKEAYEKGIEAEGNGGSDAM 117
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164 | Back alignment and structure |
|---|
Score = 46.3 bits (110), Expect = 8e-06
Identities = 27/169 (15%), Positives = 59/169 (34%), Gaps = 39/169 (23%)
Query: 73 DTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRL 132
+ +AI Y +A+S++P + + + + R
Sbjct: 26 EYSKAIDLYTQALSIAPANPI--------------------------------YLSNRAA 53
Query: 133 GYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDT 192
Y + +A + + A P W LGLA + + A ++Y + IE +
Sbjct: 54 AYSAS--GQHEKAAEDAELATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGN 111
Query: 193 SIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLASGLLGL 241
++ G L ++ +E+ + +++V G + G G+
Sbjct: 112 GGSDAMKRG-----LETTKRKIEEANRGAEPPADDVDDAAGASRGAGGM 155
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164 | Back alignment and structure |
|---|
Score = 42.4 bits (100), Expect = 2e-04
Identities = 17/79 (21%), Positives = 28/79 (35%), Gaps = 4/79 (5%)
Query: 167 GLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLES--GNIFLMLGNFRKGVEQFQLALKIS 224
G A +S AI Y +A+ + + P+ S + G K E +LA +
Sbjct: 18 GNAAMARKEYSKAIDLYTQALSIAPAN--PIYLSNRAAAYSASGQHEKAAEDAELATVVD 75
Query: 225 SENVSAHYGLASGLLGLAK 243
+ A L +A
Sbjct: 76 PKYSKAWSRLGLARFDMAD 94
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Length = 126 | Back alignment and structure |
|---|
Score = 53.0 bits (128), Expect = 2e-08
Identities = 17/95 (17%), Positives = 35/95 (36%)
Query: 140 KKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLE 199
+ A++ A++ P + L+ +L F A+ I LD I +
Sbjct: 27 GDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIR 86
Query: 200 SGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGL 234
+ + + K ++ AL++ N A G+
Sbjct: 87 KAACLVAMREWSKAQRAYEDALQVDPSNEEAREGV 121
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307 | Back alignment and structure |
|---|
Score = 56.4 bits (136), Expect = 2e-08
Identities = 30/174 (17%), Positives = 56/174 (32%), Gaps = 24/174 (13%)
Query: 40 EKAAEHFVIAAKLNPQN------AVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSV 93
E+A + ++ A+ + N A AF G A++ ++A + ++
Sbjct: 53 EQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQ-RMPEAVQYIEKASVMYVENGT 111
Query: 94 SGEA------LCELLEHGGKES-----LEVVVCREASDKSPRAFWAFRRLGYLQLHHKKW 142
A +L+E + E ++ +A + L + +K+
Sbjct: 112 PDTAAMALDRAGKLMEPLDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKF 171
Query: 143 SEAVQSLQHAIR------GYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELD 190
EA SLQ YPT A L + AA K + +
Sbjct: 172 DEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESYSIP 225
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Length = 166 | Back alignment and structure |
|---|
Score = 53.1 bits (128), Expect = 4e-08
Identities = 27/128 (21%), Positives = 47/128 (36%), Gaps = 5/128 (3%)
Query: 140 KKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLE 199
K + A++ AI P++ + LAY R + A+ RAIELD I
Sbjct: 27 KDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYR 86
Query: 200 SGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLASGLLGLAKQCINLGAFRWGASLLE 259
+ LG FR + ++ +K+ + A + + AF + E
Sbjct: 87 RAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQE-----CNKIVKQKAFERAIAGDE 141
Query: 260 DACKVAEA 267
V ++
Sbjct: 142 HKRSVVDS 149
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Length = 166 | Back alignment and structure |
|---|
Score = 41.6 bits (98), Expect = 3e-04
Identities = 27/166 (16%), Positives = 53/166 (31%), Gaps = 42/166 (25%)
Query: 75 QRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGY 134
+ AIK Y +A+ L+P +++ ++ R L Y
Sbjct: 30 ENAIKFYSQAIELNPSNAI--------------------------------YYGNRSLAY 57
Query: 135 LQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELD--DT 192
L+ + + A+ AI + + LG F AA++ Y +++ D
Sbjct: 58 LRT--ECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDK 115
Query: 193 SIFPLLESGNIFLMLGNFRKGVEQFQLA------LKISSENVSAHY 232
+ N + F + + + L I S + Y
Sbjct: 116 DAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEY 161
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100 | Back alignment and structure |
|---|
Score = 51.1 bits (123), Expect = 4e-08
Identities = 15/73 (20%), Positives = 30/73 (41%), Gaps = 2/73 (2%)
Query: 18 NPDDPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRA 77
+P+DP L ++ + +A F + +P + +LG Y R T A
Sbjct: 3 DPEDPFTRYALAQEHLKHDNA-SRALALFEELVETDPDYVGTYYHLGKLYERLD-RTDDA 60
Query: 78 IKCYQRAVSLSPD 90
I Y + + ++ +
Sbjct: 61 IDTYAQGIEVARE 73
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100 | Back alignment and structure |
|---|
Score = 50.3 bits (121), Expect = 8e-08
Identities = 11/75 (14%), Positives = 27/75 (36%)
Query: 157 PTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQ 216
P P AL + + S A+ + +E D + G ++ L ++
Sbjct: 4 PEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDT 63
Query: 217 FQLALKISSENVSAH 231
+ ++++ E +
Sbjct: 64 YAQGIEVAREEGTQK 78
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100 | Back alignment and structure |
|---|
Score = 46.1 bits (110), Expect = 3e-06
Identities = 17/70 (24%), Positives = 26/70 (37%)
Query: 121 KSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAI 180
+ P + L L H S A+ + + P + LG Y RL AI
Sbjct: 2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAI 61
Query: 181 KSYGRAIELD 190
+Y + IE+
Sbjct: 62 DTYAQGIEVA 71
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Length = 126 | Back alignment and structure |
|---|
Score = 51.1 bits (123), Expect = 7e-08
Identities = 17/91 (18%), Positives = 31/91 (34%)
Query: 140 KKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLE 199
W AV++ I+ P + A +L F AI +AIE D + +
Sbjct: 18 SDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIR 77
Query: 200 SGNIFLMLGNFRKGVEQFQLALKISSENVSA 230
+ + + +E A +E +
Sbjct: 78 KATAQIAVKEYASALETLDAARTKDAEVNNG 108
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125 | Back alignment and structure |
|---|
Score = 50.9 bits (123), Expect = 9e-08
Identities = 30/109 (27%), Positives = 53/109 (48%), Gaps = 4/109 (3%)
Query: 132 LGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIEL-- 189
LG + EA++ Q A+ P + W LG AY++ G + AI+ Y +A+EL
Sbjct: 15 LGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 74
Query: 190 DDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLASGL 238
++ + L GN + G++ + +E +Q AL++ N A L +
Sbjct: 75 NNAEAWYNL--GNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAK 121
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125 | Back alignment and structure |
|---|
Score = 50.5 bits (122), Expect = 2e-07
Identities = 36/147 (24%), Positives = 57/147 (38%), Gaps = 50/147 (34%)
Query: 52 LNPQN--------AVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLE 103
++P N A+ G Y AI+ YQ+A+ L P+++ EA L
Sbjct: 3 MDPGNSAEAWYNLGNAYYKQGDY--------DEAIEYYQKALELDPNNA---EAWYNL-- 49
Query: 104 HGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLW 163
G A+ + G EA++ Q A+ P + W
Sbjct: 50 --GN--------------------AYYKQGDYD-------EAIEYYQKALELDPNNAEAW 80
Query: 164 EALGLAYHRLGMFSAAIKSYGRAIELD 190
LG AY++ G + AI+ Y +A+ELD
Sbjct: 81 YNLGNAYYKQGDYDEAIEYYQKALELD 107
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125 | Back alignment and structure |
|---|
Score = 45.5 bits (109), Expect = 7e-06
Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 10/83 (12%)
Query: 166 LGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLES-----GNIFLMLGNFRKGVEQFQLA 220
LG AY++ G + AI+ Y +A+ELD P GN + G++ + +E +Q A
Sbjct: 15 LGNAYYKQGDYDEAIEYYQKALELD-----PNNAEAWYNLGNAYYKQGDYDEAIEYYQKA 69
Query: 221 LKISSENVSAHYGLASGLLGLAK 243
L++ N A Y L +
Sbjct: 70 LELDPNNAEAWYNLGNAYYKQGD 92
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Length = 118 | Back alignment and structure |
|---|
Score = 50.3 bits (121), Expect = 1e-07
Identities = 18/96 (18%), Positives = 33/96 (34%)
Query: 140 KKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLE 199
+A+Q AI+ P + L+ AY + G + A + + ++L
Sbjct: 18 GNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSR 77
Query: 200 SGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLA 235
L F + ++ LK + N GL
Sbjct: 78 KAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQ 113
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Length = 118 | Back alignment and structure |
|---|
Score = 40.2 bits (95), Expect = 5e-04
Identities = 16/116 (13%), Positives = 33/116 (28%), Gaps = 34/116 (29%)
Query: 75 QRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGY 134
A++CY A+ L P + V ++ R Y
Sbjct: 21 DDALQCYSEAIKLDPHNHV--------------------------------LYSNRSAAY 48
Query: 135 LQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELD 190
+ + +A + + P + A L F A ++Y ++ +
Sbjct: 49 AKK--GDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHE 102
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411 | Back alignment and structure |
|---|
Score = 53.5 bits (129), Expect = 3e-07
Identities = 54/369 (14%), Positives = 101/369 (27%), Gaps = 101/369 (27%)
Query: 131 RLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEA-----LGLAYHRLGMFSAAIKSYGR 185
G + V Q AI+ + LG AY LG ++ A++ +
Sbjct: 53 LEGERLCNAGDCRAGVAFFQAAIQAGTED-LRTLSAIYSQLGNAYFYLGDYNKAMQYHKH 111
Query: 186 AIEL-----DDTSIFPLLES-GNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLASGLL 239
+ L D + GN ++G F + + L ++ + L
Sbjct: 112 DLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLA-RQLGDRLSEGRALY 170
Query: 240 GLAKQCINLGAFRWGASLLEDACKVAEANTR--------LA---------------GNMS 276
L G + + V EA TR L GN+
Sbjct: 171 NLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLG 230
Query: 277 CIWKLHGDIQLTYAKCFPWAEERQSLEFDVETFSASIVSWKTTCLMAAISSKSSYQRALY 336
+ L GD + AI +Q L
Sbjct: 231 NTYYLLGD----FQA--------------------------------AIEH---HQERLR 251
Query: 337 LA------PWQANIYTDIAITSDLIYSLNEAYGHYQSAWHVSEKMALGALLLEGDNCQFW 390
+A + +++ + + +A HY+ ++ ++ G+
Sbjct: 252 IAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVEL--------GEREVEA 303
Query: 391 VTLGCLSN-YNGLKQHA-----LIRGLQLDVSL------ADAWAHIGKLYGEVGEKKLAR 438
+ L N Y L + R L + L A A +G + +G + A
Sbjct: 304 QSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERAL 363
Query: 439 QAFDSARSI 447
+ + +
Sbjct: 364 KYAEQHLQL 372
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411 | Back alignment and structure |
|---|
Score = 49.2 bits (118), Expect = 6e-06
Identities = 47/282 (16%), Positives = 91/282 (32%), Gaps = 53/282 (18%)
Query: 20 DDPSLHLDLGL--HLWENSESKEKAAEHFVIAAKLNPQN----AVAFRYLGHYYTRFSID 73
S+ L+L L N+ F A + ++ + + LG+ Y D
Sbjct: 43 GGSSMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLG-D 101
Query: 74 TQRAIKCYQRAVSLS------PDDSVS----GEALCELLEHGG-----KESLEVVVCREA 118
+A++ ++ ++L+ ++ S G L + + L + R+
Sbjct: 102 YNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTL--ARQL 159
Query: 119 SDKSPRAF------WAFRRLG---YLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEA---- 165
D+ + G + K + ++L A+ Y + L
Sbjct: 160 GDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDR 219
Query: 166 ---------LGLAYHRLGMFSAAIKSYGRAIEL-----DDTSIFPLLES-GNIFLMLGNF 210
LG Y+ LG F AAI+ + + + D + + GN + LG F
Sbjct: 220 GAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQF 279
Query: 211 RKGVEQFQLALKISSENVSAHYGLASGLLGLAKQCINLGAFR 252
E ++ L ++ E + A L L F
Sbjct: 280 EDAAEHYKRTLALAVE-LGEREVEAQSCYSLGNTYTLLHEFN 320
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411 | Back alignment and structure |
|---|
Score = 46.9 bits (112), Expect = 3e-05
Identities = 35/223 (15%), Positives = 70/223 (31%), Gaps = 42/223 (18%)
Query: 39 KEKAAEHFVIAAKLNPQN-AVAFRYLGHYYTRFSI---------DTQRAIKCYQRAVSLS 88
+ + L N + G + + + RA++ YQ + L
Sbjct: 156 ARQLGDRLSEGRALY--NLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLM 213
Query: 89 ------PDDSVS----GEALCELLEHGG-----KESLEVVVCREASDKSPRAFWAFRRLG 133
+ G L + +E L + RE D++ A LG
Sbjct: 214 RDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRI--AREFGDRAAER-RANSNLG 270
Query: 134 YLQLHHKKWSEAVQSLQHAIRGY-PTSPHLWEA-----LGLAYHRLGMFSAAIKSYGRAI 187
+ ++ +A + + + EA LG Y L F+ AI+ + R +
Sbjct: 271 NSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHL 330
Query: 188 EL-----DDTSIFPLLES-GNIFLMLGNFRKGVEQFQLALKIS 224
+ D S GN +G + ++ + L+++
Sbjct: 331 AIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLA 373
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411 | Back alignment and structure |
|---|
Score = 45.0 bits (107), Expect = 1e-04
Identities = 60/385 (15%), Positives = 107/385 (27%), Gaps = 92/385 (23%)
Query: 165 ALGLAYHRLGMFSAAIKSYGRAIEL------DDTSIFPLLESGNIFLMLGNFRKGVEQFQ 218
A ++ LG S+ + + L G G+ R GV FQ
Sbjct: 13 AENVSSLGLGSGGGGTNSHDGNSQQGSGSDGGSSMCLELALEGERLCNAGDCRAGVAFFQ 72
Query: 219 LALKISSENVSAHYGLASGLLGLAKQCINLGAFRWGASLLEDACKVA--------EANTR 270
A++ +E+ L++ L LG + + +A EA +
Sbjct: 73 AAIQAGTED---LRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSS 129
Query: 271 LAGNMSCIWKLHGDIQLTYAKCFPWAEE--RQSL-------------------------- 302
GN+ K+ G + + A + L
Sbjct: 130 --GNLGNTLKVMGR----FDE----AAICCERHLTLARQLGDRLSEGRALYNLGNVYHAK 179
Query: 303 -EFDVETFSASIVSWKTTCLMAAISSKSSYQRALYLA------PWQANIYTDIAITSDLI 355
+ + L A+ YQ L L Q ++ T L+
Sbjct: 180 GKHLGQRNPGKFGDDVKEALTRAV---EFYQENLKLMRDLGDRGAQGRACGNLGNTYYLL 236
Query: 356 YSLNEAYGHYQSAWHVSEKMALGALLLEGDNCQFWVTLGCLSN-YNGLKQH--ALI---R 409
A H+Q ++ + GD L N + L Q A R
Sbjct: 237 GDFQAAIEHHQERLRIAREF--------GDRAAERRANSNLGNSHIFLGQFEDAAEHYKR 288
Query: 410 GLQLDVSL------ADAWAHIGKLYGEVGEKKLA----RQAFDSARSID--PSLALPWAG 457
L L V L A + +G Y + E A + A+ + A
Sbjct: 289 TLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWS 348
Query: 458 MSADVQASESLVDDAFESCLRAVQI 482
+ + ++ + A + + +Q+
Sbjct: 349 L-GNAHSAIGGHERALKYAEQHLQL 372
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112 | Back alignment and structure |
|---|
Score = 48.2 bits (116), Expect = 6e-07
Identities = 18/107 (16%), Positives = 37/107 (34%), Gaps = 4/107 (3%)
Query: 128 AFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAI 187
+ G LQ ++E++ + AI+ P W G A + L + A+ Y I
Sbjct: 8 EYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVI 67
Query: 188 EL--DDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHY 232
+ D+ + + + E + K+ + H+
Sbjct: 68 NVIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHH--HHH 112
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112 | Back alignment and structure |
|---|
Score = 47.8 bits (115), Expect = 9e-07
Identities = 15/89 (16%), Positives = 32/89 (35%), Gaps = 2/89 (2%)
Query: 157 PTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQ 216
+P + G+ + G ++ +I + +AI+LD L G L + + V+
Sbjct: 3 DQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDC 62
Query: 217 FQLALKIS--SENVSAHYGLASGLLGLAK 243
+ + + N A L +
Sbjct: 63 YNYVINVIEDEYNKDVWAAKADALRYIEG 91
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112 | Back alignment and structure |
|---|
Score = 42.4 bits (101), Expect = 7e-05
Identities = 16/97 (16%), Positives = 35/97 (36%), Gaps = 22/97 (22%)
Query: 18 NPDDPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNA-------VAFRYLGHYYTRF 70
+P + G+ ++ E + + F A +L+P+ + A L Y
Sbjct: 2 VDQNPEEYYLEGVLQYDAGNYTE-SIDLFEKAIQLDPEESKYWLMKGKALYNLERY---- 56
Query: 71 SIDTQRAIKCYQRAVSLSPDDSVS------GEALCEL 101
+ A+ CY +++ D+ +AL +
Sbjct: 57 ----EEAVDCYNYVINVIEDEYNKDVWAAKADALRYI 89
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Length = 111 | Back alignment and structure |
|---|
Score = 48.1 bits (115), Expect = 7e-07
Identities = 16/83 (19%), Positives = 32/83 (38%), Gaps = 1/83 (1%)
Query: 140 KKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLE 199
+ EAV I P +P + +A +LG ++ AI+ + + T+ +
Sbjct: 18 GLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIR 77
Query: 200 SGNIFLMLGNFRKGVEQFQLALK 222
S + L + V Q+ +
Sbjct: 78 SK-LQYRLELAQGAVGSVQIPVV 99
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Length = 111 | Back alignment and structure |
|---|
Score = 42.3 bits (100), Expect = 8e-05
Identities = 16/105 (15%), Positives = 41/105 (39%), Gaps = 7/105 (6%)
Query: 167 GLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLES--GNIFLMLGNFRKGVEQFQLALKIS 224
G + + G++ A+ Y + I + P+ S + LG + + ++ Q L+ +
Sbjct: 11 GNSLFKQGLYREAVHCYDQLITAQPQN--PVGYSNKAMALIKLGEYTQAIQMCQQGLRYT 68
Query: 225 SENVSAHYGLASGL-LGLAKQCINLGAFRWGASLLEDACKVAEAN 268
S L LA+ +G+ + +++ + + +
Sbjct: 69 STAEHVAIRSKLQYRLELAQGA--VGSVQIPVVEVDELPEGYDRS 111
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131 | Back alignment and structure |
|---|
Score = 48.1 bits (115), Expect = 1e-06
Identities = 19/85 (22%), Positives = 38/85 (44%), Gaps = 2/85 (2%)
Query: 165 ALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKIS 224
LG ++ F A+K Y +A ELD T++ + ++ G++ K E + A+++
Sbjct: 9 ELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVG 68
Query: 225 SENVSAHYGLASGL--LGLAKQCIN 247
EN + +A +G +
Sbjct: 69 RENREDYRQIAKAYARIGNSYFKEE 93
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131 | Back alignment and structure |
|---|
Score = 47.7 bits (114), Expect = 1e-06
Identities = 13/95 (13%), Positives = 30/95 (31%), Gaps = 7/95 (7%)
Query: 140 KKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLE 199
K + A++ A PT+ Y G ++ + +AIE+ + +
Sbjct: 18 KDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQ 77
Query: 200 S-------GNIFLMLGNFRKGVEQFQLALKISSEN 227
GN + ++ + + +L
Sbjct: 78 IAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTP 112
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131 | Back alignment and structure |
|---|
Score = 41.1 bits (97), Expect = 3e-04
Identities = 16/126 (12%), Positives = 35/126 (27%), Gaps = 41/126 (32%)
Query: 75 QRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGY 134
A+K Y +A L P + + + Y
Sbjct: 21 DTALKHYDKAKELDPTNMT--------------------------------YITNQAAVY 48
Query: 135 LQLHHKKWSEAVQSLQHAIR-------GYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAI 187
+ +++ + + AI Y + +G +Y + + AI Y +++
Sbjct: 49 FEK--GDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSL 106
Query: 188 ELDDTS 193
T
Sbjct: 107 AEHRTP 112
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127 | Back alignment and structure |
|---|
Score = 48.0 bits (115), Expect = 1e-06
Identities = 21/85 (24%), Positives = 38/85 (44%), Gaps = 2/85 (2%)
Query: 165 ALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKIS 224
LG A ++ F A Y +AIELD ++I ++ F + V+ + A+++
Sbjct: 13 DLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVG 72
Query: 225 SENVSAHYGLASGL--LGLAKQCIN 247
E + + +A + G A Q N
Sbjct: 73 RETRADYKLIAKAMSRAGNAFQKQN 97
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127 | Back alignment and structure |
|---|
Score = 48.0 bits (115), Expect = 1e-06
Identities = 13/83 (15%), Positives = 28/83 (33%)
Query: 140 KKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLE 199
K + +A AI P++ + Y F+ ++ +A+E+ +
Sbjct: 22 KDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKL 81
Query: 200 SGNIFLMLGNFRKGVEQFQLALK 222
GN + LA++
Sbjct: 82 IAKAMSRAGNAFQKQNDLSLAVQ 104
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127 | Back alignment and structure |
|---|
Score = 42.3 bits (100), Expect = 1e-04
Identities = 24/150 (16%), Positives = 50/150 (33%), Gaps = 46/150 (30%)
Query: 50 AKLNPQNAVAFRYLG--HYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGK 107
+ A+A + LG Y + D ++A Y +A+ L P +
Sbjct: 1 SNAMTDAAIAEKDLGNAAYKQK---DFEKAHVHYDKAIELDPSNIT-------------- 43
Query: 108 ESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEA-- 165
F+ + Y + KK++E VQ + A+ + ++
Sbjct: 44 ------------------FYNNKAAVYFEE--KKFAECVQFCEKAVEVGRETRADYKLIA 83
Query: 166 -----LGLAYHRLGMFSAAIKSYGRAIELD 190
G A+ + S A++ + R++
Sbjct: 84 KAMSRAGNAFQKQNDLSLAVQWFHRSLSEF 113
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 Length = 158 | Back alignment and structure |
|---|
Score = 49.0 bits (116), Expect = 1e-06
Identities = 25/106 (23%), Positives = 45/106 (42%), Gaps = 19/106 (17%)
Query: 12 EDSLEANPDDPSLHLDLGLHLWENSESK---------EKAAEHFVIAAKLNPQNAVAFRY 62
E++ ++NP D G L E S+ ++A F A ++P+ A
Sbjct: 26 ENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWC 85
Query: 63 LGHYYTRFSIDT----------QRAIKCYQRAVSLSPDDSVSGEAL 98
+G+ YT F+ T A + +Q+AV PD++ ++L
Sbjct: 86 IGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSL 131
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99 | Back alignment and structure |
|---|
Score = 46.2 bits (110), Expect = 2e-06
Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 141 KWSEAVQSLQHAIRGYPTSPH-LWEALGLAYHRLGMFSAAIKSYGRAIELD 190
A+Q+L+ ++ P + +G AY +LG + A+ +Y AIEL+
Sbjct: 15 DIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203 | Back alignment and structure |
|---|
Score = 48.0 bits (115), Expect = 3e-06
Identities = 25/147 (17%), Positives = 48/147 (32%), Gaps = 15/147 (10%)
Query: 116 REASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSP-HLWEA-----LGLA 169
+ + + A LGY+ ++ EA S Q + S H E +G+
Sbjct: 17 ALLAHPATAS-GARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMV 75
Query: 170 YHRLGMFSAAIKSYGRAIEL-----DDTSI--FPLLESGNIFLMLGNFRKGVEQFQLALK 222
G + AA + + EL +D E + L G+ ++++ +L
Sbjct: 76 ERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLV 135
Query: 223 ISSENVSAHYGLASGLLGLAKQCINLG 249
+ + +A GL
Sbjct: 136 YAQQ-ADDQVAIACAFRGLGDLAQQEK 161
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203 | Back alignment and structure |
|---|
Score = 46.1 bits (110), Expect = 2e-05
Identities = 27/221 (12%), Positives = 60/221 (27%), Gaps = 49/221 (22%)
Query: 41 KAAEHF----VIAAKLN--PQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVS 94
+A ++ A L + A LG+ Y A +Q
Sbjct: 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMD-RFDEARASFQALQQQ------- 55
Query: 95 GEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIR 154
+++ D + A ++G ++ W A +
Sbjct: 56 --------------------AQKSGDHTAEH-RALHQVGMVERMAGNWDAARRCFLEERE 94
Query: 155 GYPTSP--HLWEA-----LGLAYHRLGMFSAAIKSYGRAIEL-----DDTSIFPLLES-G 201
+ P L + + G + A + Y +++ D +I G
Sbjct: 95 LLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLG 154
Query: 202 NIFLMLGNFRKGVEQFQLALKISSENVSAHYGLASGLLGLA 242
++ N + + + A I +E + + + L
Sbjct: 155 DLAQQEKNLLEAQQHWLRARDIFAE-LEDSEAVNELMTRLN 194
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406 | Back alignment and structure |
|---|
Score = 49.6 bits (119), Expect = 4e-06
Identities = 39/224 (17%), Positives = 73/224 (32%), Gaps = 31/224 (13%)
Query: 53 NPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLS------PDDSVS----GEALCELL 102
+ +G + Q A+ Y+ +SL + G L
Sbjct: 142 KSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLG 201
Query: 103 EHGG-----KESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHA----- 152
++ L + +E DK+ A+ LG + ++ A + +
Sbjct: 202 NFRDAVIAHEQRLLI--AKEFGDKAAER-RAYSNLGNAYIFLGEFETASEYYKKTLLLAR 258
Query: 153 -IRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIEL-----DDTSIFPLLES-GNIFL 205
++ +LG Y L + AI + + + + D S GN +
Sbjct: 259 QLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYT 318
Query: 206 MLGNFRKGVEQFQLALKISSENVSAHYGLASGLLGLAKQCINLG 249
LGN + + + L+IS E V G + L L+ + LG
Sbjct: 319 ALGNHDQAMHFAEKHLEISRE-VGDKSGELTARLNLSDLQMVLG 361
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406 | Back alignment and structure |
|---|
Score = 46.9 bits (112), Expect = 3e-05
Identities = 45/310 (14%), Positives = 89/310 (28%), Gaps = 56/310 (18%)
Query: 166 LGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLES----GNIFLMLGNFRKGVEQFQLAL 221
G + G A + + A+++ + L GN + L ++ K +E L
Sbjct: 15 EGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDL 74
Query: 222 KISSENVSAHYGLASGLLGLAKQCINLGAFRWGASLLEDACKVAEANTRLAG------NM 275
+ + + G A L LG F + ++ G N+
Sbjct: 75 TL-ARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNL 133
Query: 276 SCIWKLHGDIQLTYAKCFPWAEERQSLEFDVETFSASIVSWKTTCLMAAISSKSSYQRAL 335
++ G + + L AA+ Y+ L
Sbjct: 134 GNVYHAKGKSFGCPGPQDVGEFPEEVRD----------------ALQAAV---DFYEENL 174
Query: 336 YLA------PWQANIYTDIAITSDLIYSLNEAYGHYQSAWHVSEKMALGALLLEGDNCQF 389
L Q + ++ T L+ + +A ++ ++++ GD
Sbjct: 175 SLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF--------GDKAAE 226
Query: 390 WVTLGCLSN-YNGLKQH--ALI---RGLQLDVSL------ADAWAHIGKLYGEVGEKKLA 437
L N Y L + A + L L L A + +G Y + + + A
Sbjct: 227 RRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKA 286
Query: 438 RQAFDSARSI 447
+I
Sbjct: 287 IDYHLKHLAI 296
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406 | Back alignment and structure |
|---|
Score = 44.6 bits (106), Expect = 2e-04
Identities = 45/244 (18%), Positives = 72/244 (29%), Gaps = 50/244 (20%)
Query: 54 PQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVS--------GEALCELLEHG 105
+ + G + D + + ++ AV + +D + G A L ++
Sbjct: 6 EASCLELALEGERLCKSG-DCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYA 64
Query: 106 G-----KESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGY-PTS 159
L + R D+ A A LG + EA+ Q + +
Sbjct: 65 KALEYHHHDLT--LARTIGDQLGEA-KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELN 121
Query: 160 PHLWEA-----LGLAYHRLG--------------------MFSAAIKSYGRAIEL----- 189
+ EA LG YH G AA+ Y + L
Sbjct: 122 DKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALG 181
Query: 190 DDTSIFPLLES-GNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLASGLLGLAKQCINL 248
D + + GN +LGNFR V + L I ++ L I L
Sbjct: 182 DRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLI-AKEFGDKAAERRAYSNLGNAYIFL 240
Query: 249 GAFR 252
G F
Sbjct: 241 GEFE 244
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 Length = 477 | Back alignment and structure |
|---|
Score = 48.9 bits (117), Expect = 7e-06
Identities = 23/103 (22%), Positives = 39/103 (37%)
Query: 128 AFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAI 187
+ K + A++ AI P++ + LAY R + A+ RAI
Sbjct: 8 ELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAI 67
Query: 188 ELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSA 230
ELD I + LG FR + ++ +K+ + A
Sbjct: 68 ELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDA 110
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 148 | Back alignment and structure |
|---|
Score = 45.8 bits (109), Expect = 9e-06
Identities = 17/98 (17%), Positives = 30/98 (30%), Gaps = 3/98 (3%)
Query: 140 KKWSEAVQSLQHAIRGYPTS---PHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFP 196
+ A+ + A+ T L + +L + A +AIE D +
Sbjct: 42 GDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKA 101
Query: 197 LLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGL 234
L LG + V Q + + +N L
Sbjct: 102 LYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEAL 139
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338 | Back alignment and structure |
|---|
Score = 48.0 bits (115), Expect = 1e-05
Identities = 28/152 (18%), Positives = 46/152 (30%), Gaps = 13/152 (8%)
Query: 131 RLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEA-----LGLAYHRLGMFSAAIKSYGR 185
G V + A++ + LG AY L ++ A++ +
Sbjct: 10 LEGERLCKSGDCRAGVSFFEAAVQVGTED-LKTLSAIYSQLGNAYFYLHDYAKALEYHHH 68
Query: 186 AIEL-----DDTSIFPLLES-GNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLASGLL 239
+ L D + GN +LGNF + + Q L IS E ++ G A L
Sbjct: 69 DLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRE-LNDKVGEARALY 127
Query: 240 GLAKQCINLGAFRWGASLLEDACKVAEANTRL 271
L G + + L
Sbjct: 128 NLGNVYHAKGKSFGCPGPQDTGEFPEDVRNAL 159
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338 | Back alignment and structure |
|---|
Score = 47.6 bits (114), Expect = 1e-05
Identities = 44/260 (16%), Positives = 79/260 (30%), Gaps = 35/260 (13%)
Query: 11 LEDSLEANPDDPSLHLDLGLHLWENSESKEKAAEHF----VIAAKLNPQNAVAFRY--LG 64
++ E +++ LG + KA E+ +A + Q A LG
Sbjct: 32 VQVGTEDLKTLSAIYSQLGN-AYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLG 90
Query: 65 HYYTRFSIDTQRAIKCYQRAVSLS---PDDSVSGEALCELLEHGGKESLEVVVCREASDK 121
+ + AI C QR + +S D AL L G A K
Sbjct: 91 NTLKVLG-NFDEAIVCCQRHLDISRELNDKVGEARALYNL----G-------NVYHAKGK 138
Query: 122 SPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSP-HLWEA-----LGLAYHRLGM 175
S + + AV + + + LG ++ LG
Sbjct: 139 SFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGN 198
Query: 176 FSAAIKSYGRAIEL-----DDTSIFPLLES-GNIFLMLGNFRKGVEQFQLALKISSENVS 229
F A+ ++ + + + D + + GN ++ LG F E ++ L + + +
Sbjct: 199 FRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLL-ARQLK 257
Query: 230 AHYGLASGLLGLAKQCINLG 249
A L L
Sbjct: 258 DRAVEAQSCYSLGNTYTLLQ 277
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338 | Back alignment and structure |
|---|
Score = 43.8 bits (104), Expect = 2e-04
Identities = 33/201 (16%), Positives = 63/201 (31%), Gaps = 30/201 (14%)
Query: 53 NPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLS------PDDSVS----GEALCELL 102
+ G + Q A+ Y+ +SL + G L
Sbjct: 138 KSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLG 197
Query: 103 EHGG-----KESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHA----- 152
++ L + +E DK+ A+ LG + ++ A + +
Sbjct: 198 NFRDAVIAHEQRLL--IAKEFGDKAAER-RAYSNLGNAYIFLGEFETASEYYKKTLLLAR 254
Query: 153 -IRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIEL-----DDTSIFPLLES-GNIFL 205
++ +LG Y L + AI + + + + D S GN +
Sbjct: 255 QLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYT 314
Query: 206 MLGNFRKGVEQFQLALKISSE 226
LGN + + + L+IS E
Sbjct: 315 ALGNHDQAMHFAEKHLEISRE 335
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338 | Back alignment and structure |
|---|
Score = 42.6 bits (101), Expect = 6e-04
Identities = 46/241 (19%), Positives = 71/241 (29%), Gaps = 50/241 (20%)
Query: 57 AVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVS--------GEALCELLEHGG-- 106
+ G + D + + ++ AV + +D + G A L ++
Sbjct: 5 CLELALEGERLCKSG-DCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKAL 63
Query: 107 ---KESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGY-PTSPHL 162
L + R D+ A A LG + EA+ Q + + +
Sbjct: 64 EYHHHDLT--LARTIGDQLGEA-KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKV 120
Query: 163 WEA-----LGLAYHRLG--------------------MFSAAIKSYGRAIEL-----DDT 192
EA LG YH G AA+ Y + L D
Sbjct: 121 GEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRA 180
Query: 193 SIFPLLES-GNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLASGLLGLAKQCINLGAF 251
+ + GN +LGNFR V + L I+ E L I LG F
Sbjct: 181 AQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKE-FGDKAAERRAYSNLGNAYIFLGEF 239
Query: 252 R 252
Sbjct: 240 E 240
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91 | Back alignment and structure |
|---|
Score = 43.2 bits (103), Expect = 2e-05
Identities = 22/71 (30%), Positives = 39/71 (54%), Gaps = 4/71 (5%)
Query: 166 LGLAYHRLGMFSAAIKSYGRAIEL--DDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKI 223
LG AY++ G + AI+ Y +A+EL ++ + L GN + G++ + +E +Q AL++
Sbjct: 15 LGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNL--GNAYYKQGDYDEAIEYYQKALEL 72
Query: 224 SSENVSAHYGL 234
N A L
Sbjct: 73 DPNNAEAKQNL 83
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383 | Back alignment and structure |
|---|
Score = 46.4 bits (110), Expect = 4e-05
Identities = 26/218 (11%), Positives = 56/218 (25%), Gaps = 43/218 (19%)
Query: 62 YLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDK 121
+ G Y + AIK +++A S D+
Sbjct: 108 FRGMYELDQR-EYLSAIKFFKKAESKL---------------------------IFVKDR 139
Query: 122 SPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGY-------PTSPHLWEALGLAYHRLG 174
+A F ++ + K+ ++ + A Y + L
Sbjct: 140 IEKA-EFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLK 198
Query: 175 MFSAAIKSYGRAIELDDTSIFPLLES------GNIFLMLGNFRKGVEQFQLALKISSENV 228
+ AI + +A + + P L G + + F+ A+ + E
Sbjct: 199 QYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAV-FEES 257
Query: 229 SAHYGLASGLLGLAKQCINLGAFRWGASLLEDACKVAE 266
+ L + + LG ++
Sbjct: 258 NILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQ 295
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383 | Back alignment and structure |
|---|
Score = 42.9 bits (101), Expect = 5e-04
Identities = 38/296 (12%), Positives = 87/296 (29%), Gaps = 50/296 (16%)
Query: 166 LGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLES------GNIFLMLGNFRKGVEQFQL 219
G+ + +AIK + +A + ++ + + ++ +
Sbjct: 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQ 168
Query: 220 ALKISSENVSAHYGLASGLLGLAKQCINLGAFRWGASLLEDACKVAEANTRLAGNMSCIW 279
A +I E+ + + L A ++L + S + A +AEA +
Sbjct: 169 AYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAE----KQPQLMG 224
Query: 280 KLHGDIQLTYAKCFPWAEERQSLEFDVETFSASIVSWKTTCLMAAISSKSSYQRALYLA- 338
+ +I L ++ ++ + ++RA+ +
Sbjct: 225 RTLYNIGLCKNS---QSQYEDAIPY--------------------------FKRAIAVFE 255
Query: 339 -----PWQANIYTDIAITSDLIYSLNEAYGHYQSAWHVSEKMALGALLLEGDNCQFWVTL 393
P Y I + +++A+ ++ S+K L E + + +L
Sbjct: 256 ESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLK---SL 312
Query: 394 GCLSNYNGLKQHAL--IRGLQLDVSLADAWAHIGKLYGEVGEKKLARQAFDSARSI 447
Q + L L D + K Y E + A F +
Sbjct: 313 YLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQV 368
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} Length = 282 | Back alignment and structure |
|---|
Score = 45.5 bits (107), Expect = 5e-05
Identities = 29/228 (12%), Positives = 58/228 (25%), Gaps = 21/228 (9%)
Query: 437 ARQAFDSARSIDPSLALPWAG-MSADVQASESLVD-----DAFESCLRAVQILPLA---E 487
+ F + D S W G + +L F +VQI
Sbjct: 25 SLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNAR 84
Query: 488 FQIGLAKLAKLSGHLSSSQVFGAIQQAIQRGPHYPESHNLYGLVCEARSDYQA----AVV 543
IG S + +Y ++ A S++ AVV
Sbjct: 85 IAIGGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHLVAWMKAVV 144
Query: 544 SYRLARY-----AISSSSGTVPNSHFQDISINLARSLSRAGN---ALDAVRECESLERQG 595
R+ + S+ + + + A + E
Sbjct: 145 YGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGE 204
Query: 596 MLDAEVLQVYAFSLWQLGKYDLALSMARNLASSVSAMEQSSAAASVSF 643
+ A + G A+++ L ++ + ++A S+
Sbjct: 205 ACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPEPKVAAALKDPSY 252
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378 | Back alignment and structure |
|---|
Score = 46.0 bits (109), Expect = 5e-05
Identities = 29/230 (12%), Positives = 56/230 (24%), Gaps = 29/230 (12%)
Query: 166 LGLAYHRLGMFSAAIKSYGRAIEL-----DDTSIFPLLES-GNIFLMLGNFRKGVEQFQL 219
G+ + AI Y A + DD + + +
Sbjct: 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQ 166
Query: 220 ALKISSENVSAHYGLASGLLGLAKQCINLGAFRWGASLLEDACKVAEA--NTRLAG---- 273
AL I + L +A + + LE A ++A N R
Sbjct: 167 ALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLL 226
Query: 274 NMSCIWKLHGDIQLTYAKCFPWAEERQSLEFDVETFSASIVSWKTTCLMAAISSK----- 328
N++ + GD + ++ + E + K ++ K
Sbjct: 227 NIANSYDRSGD----DQMAVEHFQ--KAAKVSREKVPDLLP--KVLFGLSWTLCKAGQTQ 278
Query: 329 ---SSYQRALYLAP-WQANIYTDIAITSDLIYSLNEAYGHYQSAWHVSEK 374
+ L Y ++ + +Y EK
Sbjct: 279 KAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK 328
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164 | Back alignment and structure |
|---|
Score = 43.7 bits (104), Expect = 7e-05
Identities = 17/93 (18%), Positives = 35/93 (37%), Gaps = 7/93 (7%)
Query: 166 LGLAYHRLGMFSAAIKSYGRAIEL-----DDTSIFPLLES-GNIFLMLGNFRKGVEQFQL 219
LG ++ LG F A+ ++ + + + D + + GN ++ LG F E ++
Sbjct: 15 LGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKK 74
Query: 220 ALKISSENVSAHYGLASGLLGLAKQCINLGAFR 252
L + + + A L L +
Sbjct: 75 TLLL-ARQLKDRAVEAQSCYSLGNTYTLLQDYE 106
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164 | Back alignment and structure |
|---|
Score = 43.3 bits (103), Expect = 8e-05
Identities = 23/90 (25%), Positives = 34/90 (37%), Gaps = 7/90 (7%)
Query: 166 LGLAYHRLGMFSAAIKSYGRAIEL-----DDTSIFPLLES-GNIFLMLGNFRKGVEQFQL 219
LG AY LG F A + Y + + L D S GN + +L ++ K ++
Sbjct: 55 LGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLK 114
Query: 220 ALKISSENVSAHYGLASGLLGLAKQCINLG 249
L I+ E + G L LG
Sbjct: 115 HLAIAQE-LKDRIGEGRACWSLGNAYTALG 143
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164 | Back alignment and structure |
|---|
Score = 41.0 bits (97), Expect = 5e-04
Identities = 30/196 (15%), Positives = 58/196 (29%), Gaps = 51/196 (26%)
Query: 44 EHFVIAAKLNPQN-AVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELL 102
N LG++ + A+ +++ + +
Sbjct: 4 SRAAQGRAFG--NLGNTHYLLGNF--------RDAVIAHEQRLLI--------------- 38
Query: 103 EHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGY-PTSPH 161
+E DK+ A+ LG + ++ A + + +
Sbjct: 39 ------------AKEFGDKAAERI-AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDR 85
Query: 162 LWEA-----LGLAYHRLGMFSAAIKSYGRAIEL-----DDTSIFPLLES-GNIFLMLGNF 210
EA LG Y L + AI + + + + D S GN + LGN
Sbjct: 86 AVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNH 145
Query: 211 RKGVEQFQLALKISSE 226
+ + + L+IS E
Sbjct: 146 DQAMHFAEKHLEISRE 161
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Length = 336 | Back alignment and structure |
|---|
Score = 42.6 bits (100), Expect = 6e-04
Identities = 25/111 (22%), Positives = 42/111 (37%), Gaps = 15/111 (13%)
Query: 140 KKWSEAVQSLQHAIRGYPTSPHLWEA---------------LGLAYHRLGMFSAAIKSYG 184
K+ +A+ + + L + + +L FSAAI+S
Sbjct: 161 GKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCN 220
Query: 185 RAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLA 235
+A+ELD + L G L + +F FQ L++ N +A LA
Sbjct: 221 KALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLA 271
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 Length = 159 | Back alignment and structure |
|---|
Score = 40.6 bits (94), Expect = 6e-04
Identities = 19/118 (16%), Positives = 36/118 (30%), Gaps = 23/118 (19%)
Query: 133 GYLQLHHKKWSEAVQSLQHAIRGYPTSP------------HLWEALGLAYHRLGMFSAAI 180
QL ++ EA + + A+ T P L A L F A+
Sbjct: 18 AQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEAL 77
Query: 181 KSYGRAIELDDTS-----------IFPLLESGNIFLMLGNFRKGVEQFQLALKISSEN 227
S +A+ + I + LG + + +F+ +++ E
Sbjct: 78 HSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEER 135
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} Length = 129 | Back alignment and structure |
|---|
Score = 40.1 bits (94), Expect = 7e-04
Identities = 14/74 (18%), Positives = 26/74 (35%), Gaps = 8/74 (10%)
Query: 119 SDKSPRA-FWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEAL---GLAYHRLG 174
+P A +W LG + + A + + YPT L GL+ + G
Sbjct: 35 GVYTPNALYW----LGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYGEG 90
Query: 175 MFSAAIKSYGRAIE 188
+ A ++ +
Sbjct: 91 KNTEAQQTLQQVAT 104
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1173 | |||
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 100.0 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 100.0 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 100.0 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 100.0 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.98 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.97 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.97 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.97 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.97 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.96 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.95 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.95 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.94 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.94 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.94 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.93 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.93 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.93 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.93 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.92 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.91 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.91 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.91 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.91 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.9 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.89 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.88 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.88 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.87 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.87 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.87 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.87 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.86 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.86 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.86 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.85 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.85 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.85 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.84 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.84 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.84 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.83 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.83 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.83 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.82 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.82 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.82 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.82 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.81 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.81 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.81 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.81 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.81 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.8 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.8 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.8 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.8 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.79 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.78 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.78 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.77 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.77 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.77 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 99.75 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.75 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.74 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.73 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.72 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.72 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.71 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.71 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.71 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.7 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 99.7 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.7 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.7 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 99.69 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.69 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.69 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.68 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.68 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.67 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.66 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.65 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.65 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.65 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.65 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.63 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.62 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.62 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.62 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 99.61 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.61 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 99.6 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.6 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 99.6 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.59 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.59 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 99.59 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.58 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.58 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 99.56 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 99.56 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 99.54 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 99.53 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 99.53 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 99.51 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 99.49 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 99.49 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 99.49 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 99.48 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 99.48 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 99.47 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 99.46 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.46 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.45 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 99.45 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 99.44 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 99.43 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 99.43 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 99.42 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 99.42 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 99.41 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 99.41 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 99.38 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 99.35 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 99.35 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 99.35 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 99.35 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 99.35 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 99.35 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 99.35 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 99.34 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 99.34 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 99.34 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 99.33 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 99.32 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 99.32 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 99.32 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 99.31 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 99.31 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 99.31 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 99.28 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 99.28 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 99.27 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.26 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 99.25 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 99.25 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 99.25 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 99.25 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 99.24 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.24 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 99.23 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 99.22 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 99.22 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 99.22 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 99.22 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 99.21 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 99.21 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 99.2 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 99.2 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 99.19 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 99.19 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 99.17 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 99.16 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 99.16 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 99.16 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 99.15 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 99.14 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 99.14 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 99.13 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 99.12 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 99.12 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 99.12 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 99.11 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 99.09 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 99.08 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 99.06 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 99.05 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 99.05 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 99.02 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 99.02 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 99.0 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.99 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.99 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.99 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.96 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.96 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 98.77 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 98.77 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 98.75 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 98.72 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 98.71 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 98.68 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 98.65 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 98.56 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 98.56 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 98.54 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 98.54 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 98.52 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 98.5 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 98.49 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 98.47 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 98.42 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 98.33 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 98.33 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 98.2 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 98.18 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 98.14 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 98.04 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 98.01 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 98.0 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 97.97 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 97.8 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 97.75 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 97.74 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.68 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 97.56 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 97.25 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 97.25 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 97.23 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 96.92 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 96.59 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 96.33 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 96.19 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 95.76 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 95.71 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 95.35 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 95.32 | |
| 3kae_A | 242 | CDC27, possible protein of nuclear scaffold; tetra | 95.01 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 94.62 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 93.46 | |
| 3kae_A | 242 | CDC27, possible protein of nuclear scaffold; tetra | 93.4 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 93.19 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 92.62 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 92.0 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 91.8 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 91.73 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 91.66 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 90.99 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 90.93 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 90.49 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 90.22 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 89.79 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 88.5 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 87.96 | |
| 4b4t_R | 429 | RPN7, 26S proteasome regulatory subunit RPN7; hydr | 85.97 | |
| 1ya0_A | 497 | SMG-7 transcript variant 2; alpha-helical repeat, | 85.11 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 83.84 | |
| 1ya0_A | 497 | SMG-7 transcript variant 2; alpha-helical repeat, | 83.11 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 82.35 | |
| 4b4t_S | 523 | RPN3, 26S proteasome regulatory subunit RPN3; hydr | 81.68 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 80.06 |
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-36 Score=354.91 Aligned_cols=385 Identities=18% Similarity=0.222 Sum_probs=334.3
Q ss_pred HHHHHHHHccCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCC
Q 045024 27 DLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGG 106 (1173)
Q Consensus 27 ~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~~g 106 (1173)
.+|..++..|+ +++|+..+.++++.+|+++.++..+|.++.. .|++++|...++++++.+|.+..++..+|.++...|
T Consensus 4 ~~a~~~~~~g~-~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~-~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g 81 (388)
T 1w3b_A 4 ELAHREYQAGD-FEAAERHCMQLWRQEPDNTGVLLLLSSIHFQ-CRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERG 81 (388)
T ss_dssp THHHHHHHHTC-HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHCCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCC
Confidence 46778888887 9999999999999999999999999999999 999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 045024 107 KESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRA 186 (1173)
Q Consensus 107 ~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 186 (1173)
++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++.+|++..++..+|.++...|++++|++.|+++
T Consensus 82 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 161 (388)
T 1w3b_A 82 QLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKA 161 (388)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHH
Q 045024 187 IELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLASGLLGLAKQCINLGAFRWGASLLEDACKVAE 266 (1173)
Q Consensus 187 l~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~l~~~~~a~g~~~~A~~~l~~Al~~~~ 266 (1173)
++.+|++..++..+|.++...|++++|+..|+++++.+|++..++..+|.++...++
T Consensus 162 l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~----------------------- 218 (388)
T 1w3b_A 162 IETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARI----------------------- 218 (388)
T ss_dssp HHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTC-----------------------
T ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC-----------------------
Confidence 999999999999999999999999999999999999999998888777776665443
Q ss_pred HHhhhcCChHHHHHHhchHHHHHhhccchhhhhhchhhhhhhhhhhhHhhHhhhhHHHHHHHHHHHHHHhcCCCCHHHHH
Q 045024 267 ANTRLAGNMSCIWKLHGDIQLTYAKCFPWAEERQSLEFDVETFSASIVSWKTTCLMAAISSKSSYQRALYLAPWQANIYT 346 (1173)
Q Consensus 267 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~ 346 (1173)
+++|+..|++++..+|+++.++.
T Consensus 219 ---------------------------------------------------------~~~A~~~~~~al~~~p~~~~~~~ 241 (388)
T 1w3b_A 219 ---------------------------------------------------------FDRAVAAYLRALSLSPNHAVVHG 241 (388)
T ss_dssp ---------------------------------------------------------TTHHHHHHHHHHHHCTTCHHHHH
T ss_pred ---------------------------------------------------------HHHHHHHHHHHHhhCcCCHHHHH
Confidence 23567778888888999999999
Q ss_pred HHHHHHHHHhhHHHhhhhhhhhhHHHHHHHHHHHhhcCCCHHHHHHHHHhhcccHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 045024 347 DIAITSDLIYSLNEAYGHYQSAWHVSEKMALGALLLEGDNCQFWVTLGCLSNYNGLKQHALIRGLQLDVSLADAWAHIGK 426 (1173)
Q Consensus 347 ~la~~~~~~g~~~eA~~~~~~~~~~A~k~~~~al~~~p~~~~~~~~Lg~~~~~~~~a~~a~~kal~l~p~~~~a~~~Lg~ 426 (1173)
.+|.++...|++++| ...|+++++.+|+++.++..+|.
T Consensus 242 ~l~~~~~~~g~~~~A------------------------------------------~~~~~~al~~~p~~~~~~~~l~~ 279 (388)
T 1w3b_A 242 NLACVYYEQGLIDLA------------------------------------------IDTYRRAIELQPHFPDAYCNLAN 279 (388)
T ss_dssp HHHHHHHHTTCHHHH------------------------------------------HHHHHHHHHTCSSCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHH------------------------------------------HHHHHHHHhhCCCCHHHHHHHHH
Confidence 999999888888777 34677777888888899999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCChhHHHHhHHHHHHhcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCCChHH
Q 045024 427 LYGEVGEKKLARQAFDSARSIDPSLALPWAGMSADVQASESLVDDAFESCLRAVQILPLAEFQIGLAKLAKLSGHLSSSQ 506 (1173)
Q Consensus 427 ~y~~~g~~e~A~~~f~~al~~~P~~~~a~~~l~a~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~la~l~~~~g~~~~~~ 506 (1173)
++...|++++|+..|+++++.+|+++.++.. ++.++...|++++|+..|+++++..
T Consensus 280 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~-l~~~~~~~g~~~~A~~~~~~al~~~----------------------- 335 (388)
T 1w3b_A 280 ALKEKGSVAEAEDCYNTALRLCPTHADSLNN-LANIKREQGNIEEAVRLYRKALEVF----------------------- 335 (388)
T ss_dssp HHHHHSCHHHHHHHHHHHHHHCTTCHHHHHH-HHHHHHTTTCHHHHHHHHHHHTTSC-----------------------
T ss_pred HHHHcCCHHHHHHHHHHHHhhCcccHHHHHH-HHHHHHHcCCHHHHHHHHHHHHhcC-----------------------
Confidence 9999999999999999999999999988888 6778889999998888777776654
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHHHhcCC
Q 045024 507 VFGAIQQAIQRGPHYPESHNLYGLVCEARSDYQAAVVSYRLARYAISSSSGTVPNSHFQDISINLARSLSRAGN 580 (1173)
Q Consensus 507 A~~~l~~al~~~P~~~~a~~~lg~i~~~~g~~~~A~~~~~kAl~l~~~~pe~~~~~~~~~~~~~La~~~~~~g~ 580 (1173)
|+++.++..+|.++...|++++|+..|++++++ .|.+..+++++|.++..+|+
T Consensus 336 ------------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~---------~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 336 ------------PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI---------SPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp ------------TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT---------CTTCHHHHHHHHHHHHHTCC
T ss_pred ------------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---------CCCCHHHHHhHHHHHHHccC
Confidence 566677777777777778888888887777532 23345577777777776653
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-36 Score=355.16 Aligned_cols=385 Identities=18% Similarity=0.179 Sum_probs=342.7
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCC
Q 045024 62 YLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKK 141 (1173)
Q Consensus 62 ~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~ 141 (1173)
.+|..+.. .|++++|+..++++++.+|++..++..++.++...|++++|...++++++.+|.++.++..+|.++...|+
T Consensus 4 ~~a~~~~~-~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~ 82 (388)
T 1w3b_A 4 ELAHREYQ-AGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp THHHHHHH-HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC
T ss_pred hHHHHHHH-CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCC
Confidence 46788889 99999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 045024 142 WSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLAL 221 (1173)
Q Consensus 142 ~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al 221 (1173)
+++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++.+|++..++..+|.++...|++++|+..|++++
T Consensus 83 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 162 (388)
T 1w3b_A 83 LQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAI 162 (388)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHhhhcCChHHHHHHhchHHHHHhhccchhhhhhc
Q 045024 222 KISSENVSAHYGLASGLLGLAKQCINLGAFRWGASLLEDACKVAEANTRLAGNMSCIWKLHGDIQLTYAKCFPWAEERQS 301 (1173)
Q Consensus 222 ~~~p~~~~a~~~la~~~~~l~~~~~a~g~~~~A~~~l~~Al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 301 (1173)
+.+|++..++..+|.++...|+
T Consensus 163 ~~~p~~~~~~~~l~~~~~~~g~---------------------------------------------------------- 184 (388)
T 1w3b_A 163 ETQPNFAVAWSNLGCVFNAQGE---------------------------------------------------------- 184 (388)
T ss_dssp HHCTTCHHHHHHHHHHHHTTTC----------------------------------------------------------
T ss_pred HhCCCCHHHHHHHHHHHHHcCC----------------------------------------------------------
Confidence 9999998888888777766554
Q ss_pred hhhhhhhhhhhhHhhHhhhhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHhhhhhhhhhHHHHHHHHHHHh
Q 045024 302 LEFDVETFSASIVSWKTTCLMAAISSKSSYQRALYLAPWQANIYTDIAITSDLIYSLNEAYGHYQSAWHVSEKMALGALL 381 (1173)
Q Consensus 302 l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~A~k~~~~al~ 381 (1173)
+++|+..|+++++++|+++.++..+|.++...|++++|
T Consensus 185 ----------------------~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A-------------------- 222 (388)
T 1w3b_A 185 ----------------------IWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRA-------------------- 222 (388)
T ss_dssp ----------------------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHH--------------------
T ss_pred ----------------------HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHH--------------------
Confidence 23566777888888899988999998888877777766
Q ss_pred hcCCCHHHHHHHHHhhcccHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhHHHHhHHH
Q 045024 382 LEGDNCQFWVTLGCLSNYNGLKQHALIRGLQLDVSLADAWAHIGKLYGEVGEKKLARQAFDSARSIDPSLALPWAGMSAD 461 (1173)
Q Consensus 382 ~~p~~~~~~~~Lg~~~~~~~~a~~a~~kal~l~p~~~~a~~~Lg~~y~~~g~~e~A~~~f~~al~~~P~~~~a~~~l~a~ 461 (1173)
...|.+++..+|+++.++..+|.+|...|++++|+..|+++++.+|+++.++.. ++.
T Consensus 223 ----------------------~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~-l~~ 279 (388)
T 1w3b_A 223 ----------------------VAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCN-LAN 279 (388)
T ss_dssp ----------------------HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHH-HHH
T ss_pred ----------------------HHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHH-HHH
Confidence 346777788888889999999999999999999999999999999999988888 677
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Q 045024 462 VQASESLVDDAFESCLRAVQILPLAEFQIGLAKLAKLSGHLSSSQVFGAIQQAIQRGPHYPESHNLYGLVCEARSDYQAA 541 (1173)
Q Consensus 462 ~~~~~g~~~eA~~~~~~al~~~p~~~~~~~la~l~~~~g~~~~~~A~~~l~~al~~~P~~~~a~~~lg~i~~~~g~~~~A 541 (1173)
++...|++++|++.|+++++ .+|+++.++..+|.++...|++++|
T Consensus 280 ~~~~~g~~~~A~~~~~~al~-----------------------------------~~p~~~~~~~~l~~~~~~~g~~~~A 324 (388)
T 1w3b_A 280 ALKEKGSVAEAEDCYNTALR-----------------------------------LCPTHADSLNNLANIKREQGNIEEA 324 (388)
T ss_dssp HHHHHSCHHHHHHHHHHHHH-----------------------------------HCTTCHHHHHHHHHHHHTTTCHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHh-----------------------------------hCcccHHHHHHHHHHHHHcCCHHHH
Confidence 88889999888776665554 4578888999999999999999999
Q ss_pred HHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCC
Q 045024 542 VVSYRLARYAISSSSGTVPNSHFQDISINLARSLSRAGNALDAVRECESLERQGMLDAEVLQVYAFSLWQLGK 614 (1173)
Q Consensus 542 ~~~~~kAl~l~~~~pe~~~~~~~~~~~~~La~~~~~~g~~~eAi~~~~~~~~~~p~~~~~~~~la~a~~~~g~ 614 (1173)
+..|++++ +..| ....++..+|.++...|++++|++.|+++++.+|.++.++..+|.++...|+
T Consensus 325 ~~~~~~al---~~~p------~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 325 VRLYRKAL---EVFP------EFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHHHT---TSCT------TCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHH---hcCC------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHccC
Confidence 99999985 3333 3455899999999999999999999999999999999999999999988874
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-36 Score=377.61 Aligned_cols=491 Identities=14% Similarity=0.028 Sum_probs=368.5
Q ss_pred CCHHHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 045024 20 DDPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALC 99 (1173)
Q Consensus 20 ~~~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La 99 (1173)
.++..+..++..+...|+ +++|+..|++++...|+ ...++.+|.++.. .|++++|+..|++++.. |.++.++..++
T Consensus 82 ~~~~~~~~~~~~~~~~g~-~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~-~~~~~~~~~l~ 157 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQ-YKCAAFVGEKVLDITGN-PNDAFWLAQVYCC-TGDYARAKCLLTKEDLY-NRSSACRYLAA 157 (597)
T ss_dssp CHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHCC-HHHHHHHHHHHHH-TTCHHHHHHHHHHTCGG-GTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccC-chHHHHHHHHHHhhCCC-chHHHHHHHHHHH-cCcHHHHHHHHHHHhcc-ccchhHHHHHH
Confidence 356778888888888887 99999999999988885 4677889999999 99999999999988765 67788899999
Q ss_pred HHHHHCCCHHHHHHHHHHHHhhC----------------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 045024 100 ELLEHGGKESLEVVVCREASDKS----------------PRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLW 163 (1173)
Q Consensus 100 ~~~~~~g~~~~A~~~~~~al~~~----------------p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~ 163 (1173)
.+|.+.|++++|+..|++..... |.++.+++.+|.+|...|++++|+..|+++++.+|++..++
T Consensus 158 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 237 (597)
T 2xpi_A 158 FCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAF 237 (597)
T ss_dssp HHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHH
Confidence 99999999999999998633222 22478899999999999999999999999999999999888
Q ss_pred HHHHHHHHHcCCHHHHHHH---HHHHHHhCCCC-hHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCHHHHHHHHHHHH
Q 045024 164 EALGLAYHRLGMFSAAIKS---YGRAIELDDTS-IFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLASGLL 239 (1173)
Q Consensus 164 ~~la~~~~~~g~~~~A~~~---~~~al~~~p~~-~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~ 239 (1173)
..++.++...++.+.+... +.+....++.. ...+..++..|.+.|++++|+..|+++++. |.+...+..++.++.
T Consensus 238 ~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~ 316 (597)
T 2xpi_A 238 DQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL-EKSSDLLLCKADTLF 316 (597)
T ss_dssp HHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG-GGCHHHHHHHHHHHH
T ss_pred HHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC-CchHHHHHHHHHHHH
Confidence 8888766554433332221 22222222211 122334466677788888888888888776 667778888888887
Q ss_pred HHHHHHHHhhcHHHHHHHHHHHHHHHHHHhhhcCChHHHHHHhchHHHHHhhccchhhhhhchhhhhhhhhhhhHhhHhh
Q 045024 240 GLAKQCINLGAFRWGASLLEDACKVAEANTRLAGNMSCIWKLHGDIQLTYAKCFPWAEERQSLEFDVETFSASIVSWKTT 319 (1173)
Q Consensus 240 ~l~~~~~a~g~~~~A~~~l~~Al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 319 (1173)
..|+
T Consensus 317 ~~g~---------------------------------------------------------------------------- 320 (597)
T 2xpi_A 317 VRSR---------------------------------------------------------------------------- 320 (597)
T ss_dssp HTTC----------------------------------------------------------------------------
T ss_pred HhcC----------------------------------------------------------------------------
Confidence 7665
Q ss_pred hhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHhhhhhhhhhHHHHHHHHHHHhhcCCCHHHHHHHHHhhcc
Q 045024 320 CLMAAISSKSSYQRALYLAPWQANIYTDIAITSDLIYSLNEAYGHYQSAWHVSEKMALGALLLEGDNCQFWVTLGCLSNY 399 (1173)
Q Consensus 320 ~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~A~k~~~~al~~~p~~~~~~~~Lg~~~~~ 399 (1173)
+++|+..|+++++.+|++..++..++.++...|++++|.
T Consensus 321 ----~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~------------------------------------- 359 (597)
T 2xpi_A 321 ----FIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLY------------------------------------- 359 (597)
T ss_dssp ----HHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHH-------------------------------------
T ss_pred ----HHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHH-------------------------------------
Confidence 224555556666666777777777777777777776662
Q ss_pred cHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhHHHHhHHHHHHhcCCHHHHHHHHHHH
Q 045024 400 NGLKQHALIRGLQLDVSLADAWAHIGKLYGEVGEKKLARQAFDSARSIDPSLALPWAGMSADVQASESLVDDAFESCLRA 479 (1173)
Q Consensus 400 ~~~a~~a~~kal~l~p~~~~a~~~Lg~~y~~~g~~e~A~~~f~~al~~~P~~~~a~~~l~a~~~~~~g~~~eA~~~~~~a 479 (1173)
..|.++++..|+++.++..+|.+|.+.|++++|+..|+++++++|++..+|.. ++.++.+.|++++|++.|+++
T Consensus 360 -----~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~ 433 (597)
T 2xpi_A 360 -----LISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIG-FAHSFAIEGEHDQAISAYTTA 433 (597)
T ss_dssp -----HHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH-HHHHHHHHTCHHHHHHHHHHH
T ss_pred -----HHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHH-HHHHHHHcCCHHHHHHHHHHH
Confidence 23444445556666666666666666666666666666666666666666666 445666666666666666666
Q ss_pred HhcCC-chHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCCC
Q 045024 480 VQILP-LAEFQIGLAKLAKLSGHLSSSQVFGAIQQAIQRGPHYPESHNLYGLVCEARSDYQAAVVSYRLARYAISSSSGT 558 (1173)
Q Consensus 480 l~~~p-~~~~~~~la~l~~~~g~~~~~~A~~~l~~al~~~P~~~~a~~~lg~i~~~~g~~~~A~~~~~kAl~l~~~~pe~ 558 (1173)
++..| ....+..++..+...|+ .++|+..++++++..|+++.++..+|.++.+.|++++|++.|+++++.....+.
T Consensus 434 ~~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~- 510 (597)
T 2xpi_A 434 ARLFQGTHLPYLFLGMQHMQLGN--ILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQS- 510 (597)
T ss_dssp HHTTTTCSHHHHHHHHHHHHHTC--HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC-
T ss_pred HHhCccchHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhcccc-
Confidence 66665 34555556666666665 456777777777778899999999999999999999999999999876544332
Q ss_pred CCCCc-hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHhhhccccccchh
Q 045024 559 VPNSH-FQDISINLARSLSRAGNALDAVRECESLERQGMLDAEVLQVYAFSLWQLGKYDLALSMARNLASSVSAMEQSSA 637 (1173)
Q Consensus 559 ~~~~~-~~~~~~~La~~~~~~g~~~eAi~~~~~~~~~~p~~~~~~~~la~a~~~~g~~~eA~~~~~~aL~~~p~~~~~~~ 637 (1173)
.+. ...++..+|.++...|++++|++.|+++++.+|.++.++..+|.+|...|++++|++.|+++++..| ..
T Consensus 511 --~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p-----~~ 583 (597)
T 2xpi_A 511 --NEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISP-----NE 583 (597)
T ss_dssp --CSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TC
T ss_pred --chhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC-----CC
Confidence 233 3679999999999999999999999999999999999999999999999999999999999999888 44
Q ss_pred hhhHHHHHHHH
Q 045024 638 AASVSFICRLL 648 (1173)
Q Consensus 638 ~~~~~~la~l~ 648 (1173)
+.++..++.++
T Consensus 584 ~~~~~~l~~~~ 594 (597)
T 2xpi_A 584 IMASDLLKRAL 594 (597)
T ss_dssp HHHHHHHHHTT
T ss_pred hHHHHHHHHHH
Confidence 56666666554
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-34 Score=361.14 Aligned_cols=468 Identities=11% Similarity=-0.020 Sum_probs=329.3
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 045024 5 GALLLQLEDSLEANPDDPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRA 84 (1173)
Q Consensus 5 ~aAi~~l~~al~~~P~~~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~a 84 (1173)
..|+..|++++...|++ ..++.+|.++...|+ +++|+..|++++.. |.++.++..+|.+|.. .|++++|+..|++
T Consensus 101 ~~A~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~- 175 (597)
T 2xpi_A 101 KCAAFVGEKVLDITGNP-NDAFWLAQVYCCTGD-YARAKCLLTKEDLY-NRSSACRYLAAFCLVK-LYDWQGALNLLGE- 175 (597)
T ss_dssp HHHHHHHHHHHHHHCCH-HHHHHHHHHHHHTTC-HHHHHHHHHHTCGG-GTCHHHHHHHHHHHHH-TTCHHHHHHHHCS-
T ss_pred hHHHHHHHHHHhhCCCc-hHHHHHHHHHHHcCc-HHHHHHHHHHHhcc-ccchhHHHHHHHHHHH-HhhHHHHHHHHhc-
Confidence 44699999999999954 778899999999998 99999999998755 6779999999999999 9999999999996
Q ss_pred HhhCCCC-------------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHH
Q 045024 85 VSLSPDD-------------------SVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEA 145 (1173)
Q Consensus 85 l~~~p~~-------------------~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A 145 (1173)
..|.. ..++..+|.+|.+.|++++|+..|+++++.+|+++.++..++.++...++.+.+
T Consensus 176 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~ 253 (597)
T 2xpi_A 176 --TNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWD 253 (597)
T ss_dssp --SCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHH
T ss_pred --cCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHH
Confidence 34544 778999999999999999999999999999999999999888776544433332
Q ss_pred HHH---HHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 045024 146 VQS---LQHAIRGYPTS-PHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLAL 221 (1173)
Q Consensus 146 ~~~---l~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al 221 (1173)
... +.+....++.. ...+..++..|.+.|++++|+..|+++++. |.+..++..++.++...|++++|+..|++++
T Consensus 254 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 332 (597)
T 2xpi_A 254 LVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL-EKSSDLLLCKADTLFVRSRFIDVLAITTKIL 332 (597)
T ss_dssp HHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG-GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC-CchHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 221 22222222211 223344466777778888888888887776 6677788888888888888888888888888
Q ss_pred hhcCCCHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHhhhcCChHHHHHHhchHHHHHhhccchhhhhhc
Q 045024 222 KISSENVSAHYGLASGLLGLAKQCINLGAFRWGASLLEDACKVAEANTRLAGNMSCIWKLHGDIQLTYAKCFPWAEERQS 301 (1173)
Q Consensus 222 ~~~p~~~~a~~~la~~~~~l~~~~~a~g~~~~A~~~l~~Al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 301 (1173)
+.+|++..++..++.++...|+ + +
T Consensus 333 ~~~~~~~~~~~~l~~~~~~~g~-------~-------~------------------------------------------ 356 (597)
T 2xpi_A 333 EIDPYNLDVYPLHLASLHESGE-------K-------N------------------------------------------ 356 (597)
T ss_dssp HHCTTCCTTHHHHHHHHHHHTC-------H-------H------------------------------------------
T ss_pred HcCcccHHHHHHHHHHHHHhCC-------H-------H------------------------------------------
Confidence 8888777777777777776555 2 1
Q ss_pred hhhhhhhhhhhhHhhHhhhhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHhhhhhhhhhHHHHHHHHHHHh
Q 045024 302 LEFDVETFSASIVSWKTTCLMAAISSKSSYQRALYLAPWQANIYTDIAITSDLIYSLNEAYGHYQSAWHVSEKMALGALL 381 (1173)
Q Consensus 302 l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~A~k~~~~al~ 381 (1173)
+|+..++++++..|+++.++..++.+|...|++++|.. .+.+++.
T Consensus 357 ------------------------~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~-----------~~~~~~~ 401 (597)
T 2xpi_A 357 ------------------------KLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARR-----------YFSKSST 401 (597)
T ss_dssp ------------------------HHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHH-----------HHHHHHH
T ss_pred ------------------------HHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHH-----------HHHHHHH
Confidence 23344444445555555566666666666665555521 1222222
Q ss_pred hcCCCHHHHHHHHHhhc---ccHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhHHHHh
Q 045024 382 LEGDNCQFWVTLGCLSN---YNGLKQHALIRGLQLDVSLADAWAHIGKLYGEVGEKKLARQAFDSARSIDPSLALPWAGM 458 (1173)
Q Consensus 382 ~~p~~~~~~~~Lg~~~~---~~~~a~~a~~kal~l~p~~~~a~~~Lg~~y~~~g~~e~A~~~f~~al~~~P~~~~a~~~l 458 (1173)
..|++...|..++.++. +...|.+.|+++++..|+++.++..+|.+|.+.|++++|++.|+++++.+|+++.+|..
T Consensus 402 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~- 480 (597)
T 2xpi_A 402 MDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNE- 480 (597)
T ss_dssp HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHH-
T ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHH-
Confidence 22222222222222222 11222344555555556566666666666666666666666666666666666666555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCC
Q 045024 459 SADVQASESLVDDAFESCLRAVQILPLAEFQIGLAKLAKLSGHLSSSQVFGAIQQAIQRGPHY-PESHNLYGLVCEARSD 537 (1173)
Q Consensus 459 ~a~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~la~l~~~~g~~~~~~A~~~l~~al~~~P~~-~~a~~~lg~i~~~~g~ 537 (1173)
++.++.+.|++++|++.|+++++..|.. ..+|++ ..++..+|.++...|+
T Consensus 481 l~~~~~~~g~~~~A~~~~~~~~~~~~~~-----------------------------~~~p~~~~~~~~~l~~~~~~~g~ 531 (597)
T 2xpi_A 481 LGVVAFNKSDMQTAINHFQNALLLVKKT-----------------------------QSNEKPWAATWANLGHAYRKLKM 531 (597)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHS-----------------------------CCCSGGGHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhhhcc-----------------------------ccchhhHHHHHHHHHHHHHHhcC
Confidence 4446666666666666665555432200 014554 7899999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 045024 538 YQAAVVSYRLARYAISSSSGTVPNSHFQDISINLARSLSRAGNALDAVRECESLERQGMLDAEVLQVYAFSLW 610 (1173)
Q Consensus 538 ~~~A~~~~~kAl~l~~~~pe~~~~~~~~~~~~~La~~~~~~g~~~eAi~~~~~~~~~~p~~~~~~~~la~a~~ 610 (1173)
+++|++.|+++++. .|+ ...++..+|.+|...|++++|++.|+++++.+|+++.++..++.+|.
T Consensus 532 ~~~A~~~~~~~~~~---~p~------~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~ 595 (597)
T 2xpi_A 532 YDAAIDALNQGLLL---STN------DANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALE 595 (597)
T ss_dssp HHHHHHHHHHHHHH---SSC------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHh---CCC------ChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence 99999999999654 333 34589999999999999999999999999999999999999888764
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-32 Score=334.43 Aligned_cols=452 Identities=15% Similarity=0.100 Sum_probs=356.4
Q ss_pred CHHHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 045024 21 DPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCE 100 (1173)
Q Consensus 21 ~~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~ 100 (1173)
.+..++.+|..++..|+ +++|+..|+++++.+|+++.++..+|.++.. .|++++|+..|+++++.+|++..++..+|.
T Consensus 24 ~a~~~~~~g~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 101 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTAKN-FNEAIKYYQYAIELDPNEPVFYSNISACYIS-TGDLEKVIEFTTKALEIKPDHSKALLRRAS 101 (537)
T ss_dssp HHHHHHHHHHHHHHTTC-CC-CHHHHHHHHHHCTTCHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcc-HHHHHHHHHHHHhhCCCCcHHHHHHHHHHHH-cCCHHHHHHHHHHHHhcCCchHHHHHHHHH
Confidence 46789999999999998 9999999999999999999999999999999 999999999999999999999999999999
Q ss_pred HHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHcCCHH
Q 045024 101 LLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHL---WEALGLAYHRLGMFS 177 (1173)
Q Consensus 101 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~---~~~la~~~~~~g~~~ 177 (1173)
++...|++++|+..|+ ++..+|+....+ ...+...+...+|+..+++++...|..... .......+....+.+
T Consensus 102 ~~~~~g~~~~A~~~~~-~~~~~~~~~~~~---~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (537)
T 3fp2_A 102 ANESLGNFTDAMFDLS-VLSLNGDFDGAS---IEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSH 177 (537)
T ss_dssp HHHHHTCHHHHHHHHH-HHC--------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHH
T ss_pred HHHHcCCHHHHHHHHH-HHhcCCCCChHH---HHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChH
Confidence 9999999999999996 888888765544 234555666788999999998876543211 122334456677888
Q ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHH--------HHcCChHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhh
Q 045024 178 AAIKSYGRAIELDDTSIFPLLESGNIF--------LMLGNFRKGVEQFQLALKISSENVSAHYGLASGLLGLAKQCINLG 249 (1173)
Q Consensus 178 ~A~~~~~~al~~~p~~~~a~~~la~~~--------~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~l~~~~~a~g 249 (1173)
.+...+.+....++........++.++ ...|++++|+..|+++++.+|+++..+..++.++..+|..+...|
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~ 257 (537)
T 3fp2_A 178 LEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKN 257 (537)
T ss_dssp HHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcc
Confidence 777777666655555444444444443 344689999999999999999999988888888888777555555
Q ss_pred cHHHHHHHHHHHHHHHHHHhhhcCChHHHHHHhchHHHHHhhccchhhhhhchhhhhhhhhhhhHhhHhhhhHHHHHHHH
Q 045024 250 AFRWGASLLEDACKVAEANTRLAGNMSCIWKLHGDIQLTYAKCFPWAEERQSLEFDVETFSASIVSWKTTCLMAAISSKS 329 (1173)
Q Consensus 250 ~~~~A~~~l~~Al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~ 329 (1173)
+++ +|+.
T Consensus 258 ~~~-------------------------------------------------------------------------~A~~ 264 (537)
T 3fp2_A 258 NLL-------------------------------------------------------------------------DAQV 264 (537)
T ss_dssp CHH-------------------------------------------------------------------------HHHH
T ss_pred cHH-------------------------------------------------------------------------HHHH
Confidence 443 4556
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHhhhhhhhhhHHHHHHHHHHHhhcCCCHHHHHHHHHhhcccHHHHHHHHH
Q 045024 330 SYQRALYLAPWQANIYTDIAITSDLIYSLNEAYGHYQSAWHVSEKMALGALLLEGDNCQFWVTLGCLSNYNGLKQHALIR 409 (1173)
Q Consensus 330 ~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~A~k~~~~al~~~p~~~~~~~~Lg~~~~~~~~a~~a~~k 409 (1173)
.|++++..+|+ +.++..+|.++...|++++| ...|.+
T Consensus 265 ~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A------------------------------------------~~~~~~ 301 (537)
T 3fp2_A 265 LLQESINLHPT-PNSYIFLALTLADKENSQEF------------------------------------------FKFFQK 301 (537)
T ss_dssp HHHHHHHHCCC-HHHHHHHHHHTCCSSCCHHH------------------------------------------HHHHHH
T ss_pred HHHHHHhcCCC-chHHHHHHHHHHHhcCHHHH------------------------------------------HHHHHH
Confidence 66777777787 77788888777766666655 456777
Q ss_pred HHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhHHHHhHHHHHHhcCCHHHHHHHHHHHHhcCCchHHH
Q 045024 410 GLQLDVSLADAWAHIGKLYGEVGEKKLARQAFDSARSIDPSLALPWAGMSADVQASESLVDDAFESCLRAVQILPLAEFQ 489 (1173)
Q Consensus 410 al~l~p~~~~a~~~Lg~~y~~~g~~e~A~~~f~~al~~~P~~~~a~~~l~a~~~~~~g~~~eA~~~~~~al~~~p~~~~~ 489 (1173)
+++.+|+++.++..+|.++...|++++|+..|+++++.+|+++.++.. ++.++...|++++|+..|+++++
T Consensus 302 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~-la~~~~~~g~~~~A~~~~~~~~~-------- 372 (537)
T 3fp2_A 302 AVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQ-LACLLYKQGKFTESEAFFNETKL-------- 372 (537)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHH-HHHHHHHTTCHHHHHHHHHHHHH--------
T ss_pred HhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHH-HHHHHHHcCCHHHHHHHHHHHHH--------
Confidence 888889999999999999999999999999999999999999999988 67789899999988876665554
Q ss_pred HHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCCCCCCCchHHHHH
Q 045024 490 IGLAKLAKLSGHLSSSQVFGAIQQAIQRGPHYPESHNLYGLVCEARSDYQAAVVSYRLARYAISSSSGTVPNSHFQDISI 569 (1173)
Q Consensus 490 ~~la~l~~~~g~~~~~~A~~~l~~al~~~P~~~~a~~~lg~i~~~~g~~~~A~~~~~kAl~l~~~~pe~~~~~~~~~~~~ 569 (1173)
.+|+++.++..+|.++...|++++|+..|+++++.....+. .......+.
T Consensus 373 ---------------------------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~---~~~~~~~~~ 422 (537)
T 3fp2_A 373 ---------------------------KFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEK---IHVGIGPLI 422 (537)
T ss_dssp ---------------------------HCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSS---CSSTTHHHH
T ss_pred ---------------------------hCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchh---hHHHHHHHH
Confidence 45778889999999999999999999999999877544332 222334567
Q ss_pred HHHHHHHhc----------CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHhhhccccc
Q 045024 570 NLARSLSRA----------GNALDAVRECESLERQGMLDAEVLQVYAFSLWQLGKYDLALSMARNLASSVSAME 633 (1173)
Q Consensus 570 ~La~~~~~~----------g~~~eAi~~~~~~~~~~p~~~~~~~~la~a~~~~g~~~eA~~~~~~aL~~~p~~~ 633 (1173)
.+|.++... |++++|+..|+++++.+|.++.++..+|.++...|++++|++.|+++++..|...
T Consensus 423 ~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 496 (537)
T 3fp2_A 423 GKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMD 496 (537)
T ss_dssp HHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CH
T ss_pred HHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcH
Confidence 889999999 9999999999999999999999999999999999999999999999999888544
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-31 Score=321.58 Aligned_cols=414 Identities=14% Similarity=0.074 Sum_probs=293.1
Q ss_pred CHHHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 045024 21 DPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCE 100 (1173)
Q Consensus 21 ~~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~ 100 (1173)
.+..++.+|..++..|+ +++|+..|+++++.+| ++.++..+|.++.. .|++++|+..|+++++.+|++..++..+|.
T Consensus 5 ~a~~~~~~g~~~~~~g~-~~~A~~~~~~al~~~p-~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 81 (514)
T 2gw1_A 5 YALALKDKGNQFFRNKK-YDDAIKYYNWALELKE-DPVFYSNLSACYVS-VGDLKKVVEMSTKALELKPDYSKVLLRRAS 81 (514)
T ss_dssp HHHHHHHHHHHHHHTSC-HHHHHHHHHHHHHHCC-CHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHCSCCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcc-HHHHHHHHHHHHhcCc-cHHHHHhHHHHHHH-HhhHHHHHHHHHHHhccChHHHHHHHHHHH
Confidence 35788999999999987 9999999999999999 59999999999999 999999999999999999999999999999
Q ss_pred HHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHH---HHHHHHHHHHHh----------------------
Q 045024 101 LLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWS---EAVQSLQHAIRG---------------------- 155 (1173)
Q Consensus 101 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~---~A~~~l~~al~~---------------------- 155 (1173)
++...|++++|+..|++++...|.+.................. +++..++.+...
T Consensus 82 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (514)
T 2gw1_A 82 ANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSV 161 (514)
T ss_dssp HHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCH
T ss_pred HHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchh
Confidence 9999999999999999999998865433322222222211111 111111111100
Q ss_pred --------------------CCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHH-----h--C-------CCChHHHH
Q 045024 156 --------------------YPTSPHLWEALGLAYHR---LGMFSAAIKSYGRAIE-----L--D-------DTSIFPLL 198 (1173)
Q Consensus 156 --------------------~p~~~~~~~~la~~~~~---~g~~~~A~~~~~~al~-----~--~-------p~~~~a~~ 198 (1173)
.|+++..+..+|.++.. .|++++|+..|+++++ . + |.+..++.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (514)
T 2gw1_A 162 TSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLE 241 (514)
T ss_dssp HHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHH
Confidence 02335555555555554 5666666666666655 3 2 22344555
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHhhhcCChHHH
Q 045024 199 ESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLASGLLGLAKQCINLGAFRWGASLLEDACKVAEANTRLAGNMSCI 278 (1173)
Q Consensus 199 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~l~~~~~a~g~~~~A~~~l~~Al~~~~~~~~~~~~~~~~ 278 (1173)
.+|.++...|++++|+..|+++++.+|+ ..++..++.++...|+
T Consensus 242 ~~~~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~l~~~~~~~~~----------------------------------- 285 (514)
T 2gw1_A 242 HTGIFKFLKNDPLGAHEDIKKAIELFPR-VNSYIYMALIMADRND----------------------------------- 285 (514)
T ss_dssp HHHHHHHHSSCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHTSSC-----------------------------------
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCcc-HHHHHHHHHHHHHCCC-----------------------------------
Confidence 5666666666666666666666665555 4444444444433222
Q ss_pred HHHhchHHHHHhhccchhhhhhchhhhhhhhhhhhHhhHhhhhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhH
Q 045024 279 WKLHGDIQLTYAKCFPWAEERQSLEFDVETFSASIVSWKTTCLMAAISSKSSYQRALYLAPWQANIYTDIAITSDLIYSL 358 (1173)
Q Consensus 279 ~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~ 358 (1173)
+++|+..|++++..+|.++.++..+|.++...|++
T Consensus 286 ---------------------------------------------~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 320 (514)
T 2gw1_A 286 ---------------------------------------------STEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNY 320 (514)
T ss_dssp ---------------------------------------------CTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCT
T ss_pred ---------------------------------------------HHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCH
Confidence 12355555666666666666666666666666655
Q ss_pred HHhhhhhhhhhHHHHHHHHHHHhhcCCCHHHHHHHHHhhcccHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHH
Q 045024 359 NEAYGHYQSAWHVSEKMALGALLLEGDNCQFWVTLGCLSNYNGLKQHALIRGLQLDVSLADAWAHIGKLYGEVGEKKLAR 438 (1173)
Q Consensus 359 ~eA~~~~~~~~~~A~k~~~~al~~~p~~~~~~~~Lg~~~~~~~~a~~a~~kal~l~p~~~~a~~~Lg~~y~~~g~~e~A~ 438 (1173)
++| ...|.+++..+|.++.++..+|.++...|++++|+
T Consensus 321 ~~A------------------------------------------~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 358 (514)
T 2gw1_A 321 DQA------------------------------------------GKDFDKAKELDPENIFPYIQLACLAYRENKFDDCE 358 (514)
T ss_dssp THH------------------------------------------HHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHH
T ss_pred HHH------------------------------------------HHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHH
Confidence 554 34566666667777777777788888888888888
Q ss_pred HHHHHHHhhCCCChhHHHHhHHHHHHhcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhC
Q 045024 439 QAFDSARSIDPSLALPWAGMSADVQASESLVDDAFESCLRAVQILPLAEFQIGLAKLAKLSGHLSSSQVFGAIQQAIQRG 518 (1173)
Q Consensus 439 ~~f~~al~~~P~~~~a~~~l~a~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~la~l~~~~g~~~~~~A~~~l~~al~~~ 518 (1173)
..|+++++.+|+++.++.. .+.++...|++++|+..|++++...
T Consensus 359 ~~~~~~~~~~~~~~~~~~~-la~~~~~~~~~~~A~~~~~~a~~~~----------------------------------- 402 (514)
T 2gw1_A 359 TLFSEAKRKFPEAPEVPNF-FAEILTDKNDFDKALKQYDLAIELE----------------------------------- 402 (514)
T ss_dssp HHHHHHHHHSTTCSHHHHH-HHHHHHHTTCHHHHHHHHHHHHHHH-----------------------------------
T ss_pred HHHHHHHHHcccCHHHHHH-HHHHHHHCCCHHHHHHHHHHHHHhh-----------------------------------
Confidence 8888888777777777777 5667777777777777776666543
Q ss_pred CCC------HHHHHHHHHHHHH---cCCHHHHHHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHH
Q 045024 519 PHY------PESHNLYGLVCEA---RSDYQAAVVSYRLARYAISSSSGTVPNSHFQDISINLARSLSRAGNALDAVRECE 589 (1173)
Q Consensus 519 P~~------~~a~~~lg~i~~~---~g~~~~A~~~~~kAl~l~~~~pe~~~~~~~~~~~~~La~~~~~~g~~~eAi~~~~ 589 (1173)
|++ ..++..+|.++.. .|++++|+..|++++.. .| ....++..+|.++...|++++|+..|+
T Consensus 403 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~---~~------~~~~~~~~la~~~~~~g~~~~A~~~~~ 473 (514)
T 2gw1_A 403 NKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKL---DP------RSEQAKIGLAQMKLQQEDIDEAITLFE 473 (514)
T ss_dssp HTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHH---CT------TCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHh---Cc------ccHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 333 4488999999999 99999999999999754 33 334589999999999999999999999
Q ss_pred HHHHcCCCCHHHHHHH
Q 045024 590 SLERQGMLDAEVLQVY 605 (1173)
Q Consensus 590 ~~~~~~p~~~~~~~~l 605 (1173)
++++.+|.++.++..+
T Consensus 474 ~a~~~~~~~~~~~~~~ 489 (514)
T 2gw1_A 474 ESADLARTMEEKLQAI 489 (514)
T ss_dssp HHHHHCSSHHHHHHHH
T ss_pred HHHHhccccHHHHHHH
Confidence 9999999998887554
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-30 Score=313.11 Aligned_cols=419 Identities=19% Similarity=0.154 Sum_probs=331.0
Q ss_pred CHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q 045024 56 NAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYL 135 (1173)
Q Consensus 56 ~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~ 135 (1173)
.+.++..+|..+.. .|++++|+..|+++++.+| ++.++..+|.++...|++++|+..++++++.+|+++.++..+|.+
T Consensus 5 ~a~~~~~~g~~~~~-~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 82 (514)
T 2gw1_A 5 YALALKDKGNQFFR-NKKYDDAIKYYNWALELKE-DPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASA 82 (514)
T ss_dssp HHHHHHHHHHHHHH-TSCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHH-hccHHHHHHHHHHHHhcCc-cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHH
Confidence 35789999999999 9999999999999999999 688999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH---HHHH-------------------------
Q 045024 136 QLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSY---GRAI------------------------- 187 (1173)
Q Consensus 136 ~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~---~~al------------------------- 187 (1173)
+...|++++|+..|++++..+|.+...................+.+.+ +.+.
T Consensus 83 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (514)
T 2gw1_A 83 NEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVT 162 (514)
T ss_dssp HHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHH
T ss_pred HHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhH
Confidence 999999999999999999999866444333322222221111111111 1110
Q ss_pred ---------Hh--------CCCChHHHHHHHHHHHH---cCChHHHHHHHHHHHh-----h--cCCCHHHHHHHHHHHHH
Q 045024 188 ---------EL--------DDTSIFPLLESGNIFLM---LGNFRKGVEQFQLALK-----I--SSENVSAHYGLASGLLG 240 (1173)
Q Consensus 188 ---------~~--------~p~~~~a~~~la~~~~~---~g~~~~A~~~~~~al~-----~--~p~~~~a~~~la~~~~~ 240 (1173)
.. .|++..+++.+|.++.. .|++++|+..|+++++ . +|++.........++..
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (514)
T 2gw1_A 163 SMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEH 242 (514)
T ss_dssp HHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHH
Confidence 00 13447777888888776 8899999999999888 5 56554333233333333
Q ss_pred HHHHHHHhhcHHHHHHHHHHHHHHHHHHhhhcCChHHHHHHhchHHHHHhhccchhhhhhchhhhhhhhhhhhHhhHhhh
Q 045024 241 LAKQCINLGAFRWGASLLEDACKVAEANTRLAGNMSCIWKLHGDIQLTYAKCFPWAEERQSLEFDVETFSASIVSWKTTC 320 (1173)
Q Consensus 241 l~~~~~a~g~~~~A~~~l~~Al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 320 (1173)
+|..+...|+
T Consensus 243 ~~~~~~~~~~---------------------------------------------------------------------- 252 (514)
T 2gw1_A 243 TGIFKFLKND---------------------------------------------------------------------- 252 (514)
T ss_dssp HHHHHHHSSC----------------------------------------------------------------------
T ss_pred HHHHHHHCCC----------------------------------------------------------------------
Confidence 3332222222
Q ss_pred hHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHhhhhhhhhhHHHHHHHHHHHhhcCCCHHHHHHHHHhhccc
Q 045024 321 LMAAISSKSSYQRALYLAPWQANIYTDIAITSDLIYSLNEAYGHYQSAWHVSEKMALGALLLEGDNCQFWVTLGCLSNYN 400 (1173)
Q Consensus 321 ~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~A~k~~~~al~~~p~~~~~~~~Lg~~~~~~ 400 (1173)
+++|+..|+++++..|. +.++..+|.++...|++++|.
T Consensus 253 ---~~~A~~~~~~~l~~~~~-~~~~~~l~~~~~~~~~~~~A~-------------------------------------- 290 (514)
T 2gw1_A 253 ---PLGAHEDIKKAIELFPR-VNSYIYMALIMADRNDSTEYY-------------------------------------- 290 (514)
T ss_dssp ---HHHHHHHHHHHHHHCCC-HHHHHHHHHHHHTSSCCTTGG--------------------------------------
T ss_pred ---HHHHHHHHHHHHhhCcc-HHHHHHHHHHHHHCCCHHHHH--------------------------------------
Confidence 34566677777777888 888888888888888777763
Q ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhHHHHhHHHHHHhcCCHHHHHHHHHHHH
Q 045024 401 GLKQHALIRGLQLDVSLADAWAHIGKLYGEVGEKKLARQAFDSARSIDPSLALPWAGMSADVQASESLVDDAFESCLRAV 480 (1173)
Q Consensus 401 ~~a~~a~~kal~l~p~~~~a~~~Lg~~y~~~g~~e~A~~~f~~al~~~P~~~~a~~~l~a~~~~~~g~~~eA~~~~~~al 480 (1173)
..|++++..+|.++.++..+|.+|...|++++|+..|+++++.+|+++.++.. ++.++...|++++|+..|++++
T Consensus 291 ----~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~A~~~~~~~~ 365 (514)
T 2gw1_A 291 ----NYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQ-LACLAYRENKFDDCETLFSEAK 365 (514)
T ss_dssp ----GHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHH-HHHHTTTTTCHHHHHHHHHHHH
T ss_pred ----HHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHH-HHHHHHHcCCHHHHHHHHHHHH
Confidence 35667777788888899999999999999999999999999999999888888 6768888999888877666555
Q ss_pred hcCCchHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCCCCC
Q 045024 481 QILPLAEFQIGLAKLAKLSGHLSSSQVFGAIQQAIQRGPHYPESHNLYGLVCEARSDYQAAVVSYRLARYAISSSSGTVP 560 (1173)
Q Consensus 481 ~~~p~~~~~~~la~l~~~~g~~~~~~A~~~l~~al~~~P~~~~a~~~lg~i~~~~g~~~~A~~~~~kAl~l~~~~pe~~~ 560 (1173)
+ ..|+++.++..+|.++...|++++|+..|++++......+.
T Consensus 366 ~-----------------------------------~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~--- 407 (514)
T 2gw1_A 366 R-----------------------------------KFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDG--- 407 (514)
T ss_dssp H-----------------------------------HSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSS---
T ss_pred H-----------------------------------HcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccch---
Confidence 4 45677889999999999999999999999999766443322
Q ss_pred CCchHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHhhhccc
Q 045024 561 NSHFQDISINLARSLSR---AGNALDAVRECESLERQGMLDAEVLQVYAFSLWQLGKYDLALSMARNLASSVSA 631 (1173)
Q Consensus 561 ~~~~~~~~~~La~~~~~---~g~~~eAi~~~~~~~~~~p~~~~~~~~la~a~~~~g~~~eA~~~~~~aL~~~p~ 631 (1173)
......++..+|.++.. .|++++|+..|+++++.+|.++.++..+|.++...|++++|+..|+++++..|.
T Consensus 408 ~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 481 (514)
T 2gw1_A 408 IYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLART 481 (514)
T ss_dssp CSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccc
Confidence 22234589999999999 999999999999999999999999999999999999999999999999998884
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-30 Score=305.96 Aligned_cols=339 Identities=15% Similarity=0.095 Sum_probs=280.1
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 045024 7 LLLQLEDSLEANPDDPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVS 86 (1173)
Q Consensus 7 Ai~~l~~al~~~P~~~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~ 86 (1173)
+...+.+++..+|+++..++.+|..++..|+ +++|+..|+++++.+|+++.+++.+|.++.. .|++++|+..|+++++
T Consensus 11 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~-~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~-~g~~~~A~~~~~~al~ 88 (450)
T 2y4t_A 11 VDLGTENLYFQSMADVEKHLELGKKLLAAGQ-LADALSQFHAAVDGDPDNYIAYYRRATVFLA-MGKSKAALPDLTKVIQ 88 (450)
T ss_dssp ------------CHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHH
T ss_pred ccccccccccccHHHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCCccHHHHHHHHHHHHH-CCCHHHHHHHHHHHHh
Confidence 4677889999999999999999999999998 9999999999999999999999999999999 9999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcH---HHHHHH------------HHHHHHcCCHHHHHHHHHH
Q 045024 87 LSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAF---WAFRRL------------GYLQLHHKKWSEAVQSLQH 151 (1173)
Q Consensus 87 ~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~---~a~~~l------------a~~~~~~g~~~~A~~~l~~ 151 (1173)
.+|++..++..+|.++...|++++|+..|+++++.+|++. .++..+ |.++...|++++|+..|++
T Consensus 89 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 168 (450)
T 2y4t_A 89 LKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDK 168 (450)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9999999999999999999999999999999999999988 776655 6669999999999999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCHHHH
Q 045024 152 AIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAH 231 (1173)
Q Consensus 152 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~ 231 (1173)
++...|.++.++..+|.+|...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++.+|++...+
T Consensus 169 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 248 (450)
T 2y4t_A 169 ILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCF 248 (450)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998766
Q ss_pred HHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHhhhcCChHHHHHHhchHHHHHhhccchhhhhhchhhhhhhhhh
Q 045024 232 YGLASGLLGLAKQCINLGAFRWGASLLEDACKVAEANTRLAGNMSCIWKLHGDIQLTYAKCFPWAEERQSLEFDVETFSA 311 (1173)
Q Consensus 232 ~~la~~~~~l~~~~~a~g~~~~A~~~l~~Al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 311 (1173)
..++.+... .. ....+..+
T Consensus 249 ~~~~~~~~~------------------~~------------------~~~~~~~~------------------------- 267 (450)
T 2y4t_A 249 AHYKQVKKL------------------NK------------------LIESAEEL------------------------- 267 (450)
T ss_dssp HHHHHHHHH------------------HH------------------HHHHHHHH-------------------------
T ss_pred HHHHHHHHH------------------HH------------------HHHHHHHH-------------------------
Confidence 544322110 00 00011111
Q ss_pred hhHhhHhhhhHHHHHHHHHHHHHHhcCCCCHH----HHHHHHHHHHHHhhHHHhhhhhhhhhHHHHHHHHHHHhhcCCCH
Q 045024 312 SIVSWKTTCLMAAISSKSSYQRALYLAPWQAN----IYTDIAITSDLIYSLNEAYGHYQSAWHVSEKMALGALLLEGDNC 387 (1173)
Q Consensus 312 ~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~----~~~~la~~~~~~g~~~eA~~~~~~~~~~A~k~~~~al~~~p~~~ 387 (1173)
...+.+++|+..|+++++..|+++. ++..+|.++...|++++|
T Consensus 268 -------~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A-------------------------- 314 (450)
T 2y4t_A 268 -------IRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEA-------------------------- 314 (450)
T ss_dssp -------HHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHH--------------------------
T ss_pred -------HHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHH--------------------------
Confidence 1122355778888888888887744 566777777766666665
Q ss_pred HHHHHHHHhhcccHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhHHHH
Q 045024 388 QFWVTLGCLSNYNGLKQHALIRGLQLDVSLADAWAHIGKLYGEVGEKKLARQAFDSARSIDPSLALPWAG 457 (1173)
Q Consensus 388 ~~~~~Lg~~~~~~~~a~~a~~kal~l~p~~~~a~~~Lg~~y~~~g~~e~A~~~f~~al~~~P~~~~a~~~ 457 (1173)
...++++++.+|+++.+|..+|.++...|++++|+..|+++++++|+++.++..
T Consensus 315 ----------------~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 368 (450)
T 2y4t_A 315 ----------------IRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREG 368 (450)
T ss_dssp ----------------HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHH
T ss_pred ----------------HHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHH
Confidence 345667777778888888888888888888888888888888888888877776
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.98 E-value=2.4e-29 Score=300.73 Aligned_cols=331 Identities=16% Similarity=0.101 Sum_probs=267.6
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q 045024 39 KEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREA 118 (1173)
Q Consensus 39 ~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~a 118 (1173)
...+...+.+++..+|.++..++.+|..+.. .|++++|+..|+++++.+|++..++..+|.++...|++++|+..|+++
T Consensus 8 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~-~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 86 (450)
T 2y4t_A 8 SSGVDLGTENLYFQSMADVEKHLELGKKLLA-AGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKV 86 (450)
T ss_dssp ---------------CHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cccccccccccccccHHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 3567778889999999999999999999999 999999999999999999999999999999999999999999999999
Q ss_pred HhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHH------------HHHHHHcCCHHHHHHHH
Q 045024 119 SDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSP---HLWEAL------------GLAYHRLGMFSAAIKSY 183 (1173)
Q Consensus 119 l~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~---~~~~~l------------a~~~~~~g~~~~A~~~~ 183 (1173)
++.+|+++.++..+|.++...|++++|+..|+++++.+|++. .++..+ |.++...|++++|+..|
T Consensus 87 l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~ 166 (450)
T 2y4t_A 87 IQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFL 166 (450)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999999999999999999999999999999999988 776655 66699999999999999
Q ss_pred HHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHH
Q 045024 184 GRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLASGLLGLAKQCINLGAFRWGASLLEDACK 263 (1173)
Q Consensus 184 ~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~l~~~~~a~g~~~~A~~~l~~Al~ 263 (1173)
+++++..|.+..++..+|.+|...|++++|+..|+++++.+|+++.++..+|.++...|+ +++
T Consensus 167 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-------~~~---------- 229 (450)
T 2y4t_A 167 DKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGD-------HEL---------- 229 (450)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTC-------HHH----------
T ss_pred HHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-------HHH----------
Confidence 999999999999999999999999999999999999999999999988888888877655 333
Q ss_pred HHHHHhhhcCChHHHHHHhchHHHHHhhccchhhhhhchhhhhhhhhhhhHhhHhhhhHHHHHHHHHHHHHHhcCCCCHH
Q 045024 264 VAEANTRLAGNMSCIWKLHGDIQLTYAKCFPWAEERQSLEFDVETFSASIVSWKTTCLMAAISSKSSYQRALYLAPWQAN 343 (1173)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~ 343 (1173)
|+..|++++...|++..
T Consensus 230 ---------------------------------------------------------------A~~~~~~~~~~~p~~~~ 246 (450)
T 2y4t_A 230 ---------------------------------------------------------------SLSEVRECLKLDQDHKR 246 (450)
T ss_dssp ---------------------------------------------------------------HHHHHHHHHHHCTTCHH
T ss_pred ---------------------------------------------------------------HHHHHHHHHHhCCChHH
Confidence 44444444455555554
Q ss_pred HHHHH------------HHHHHHHhhHHHhhhhhhhhhHHHHHHHHHHHhhcCCCHHHHHHHHHhhcccHHHHHHHHHHH
Q 045024 344 IYTDI------------AITSDLIYSLNEAYGHYQSAWHVSEKMALGALLLEGDNCQFWVTLGCLSNYNGLKQHALIRGL 411 (1173)
Q Consensus 344 ~~~~l------------a~~~~~~g~~~eA~~~~~~~~~~A~k~~~~al~~~p~~~~~~~~Lg~~~~~~~~a~~a~~kal 411 (1173)
.+..+ +.++...|++++| ...|++++
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A------------------------------------------~~~~~~~l 284 (450)
T 2y4t_A 247 CFAHYKQVKKLNKLIESAEELIRDGRYTDA------------------------------------------TSKYESVM 284 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCHHHH------------------------------------------HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCHHHH------------------------------------------HHHHHHHH
Confidence 44333 5555555555554 44556666
Q ss_pred hcCCCcH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhHHHHhHHHHHHhcCCHHHHHHHHHHHHhcCCc-h
Q 045024 412 QLDVSLA----DAWAHIGKLYGEVGEKKLARQAFDSARSIDPSLALPWAGMSADVQASESLVDDAFESCLRAVQILPL-A 486 (1173)
Q Consensus 412 ~l~p~~~----~a~~~Lg~~y~~~g~~e~A~~~f~~al~~~P~~~~a~~~l~a~~~~~~g~~~eA~~~~~~al~~~p~-~ 486 (1173)
...|+++ .++..+|.++...|++++|+..|+++++.+|+++.+|.. ++.++...|++++|+..|+++++++|. +
T Consensus 285 ~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~-l~~~~~~~~~~~~A~~~~~~al~~~p~~~ 363 (450)
T 2y4t_A 285 KTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKD-RAEAYLIEEMYDEAIQDYETAQEHNENDQ 363 (450)
T ss_dssp HHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHH-HHHHHHHTTCHHHHHHHHHHHHTTSSSCH
T ss_pred hcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHH-HHHHHHHhcCHHHHHHHHHHHHHhCcchH
Confidence 6666653 477888999999999999999999999999998888888 666888899999988888888888774 3
Q ss_pred HHHHHHH
Q 045024 487 EFQIGLA 493 (1173)
Q Consensus 487 ~~~~~la 493 (1173)
..+..++
T Consensus 364 ~~~~~l~ 370 (450)
T 2y4t_A 364 QIREGLE 370 (450)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444444
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.97 E-value=4.5e-29 Score=305.56 Aligned_cols=386 Identities=12% Similarity=0.039 Sum_probs=274.3
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 045024 6 ALLLQLEDSLEANPDDPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAV 85 (1173)
Q Consensus 6 aAi~~l~~al~~~P~~~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al 85 (1173)
+|+..|+++++.+|+++.+++.+|.++...|+ +++|+..|+++++.+|+++.+++.+|.++.. .|++++|+..|+ ++
T Consensus 43 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~g~~~~A~~~~~-~~ 119 (537)
T 3fp2_A 43 EAIKYYQYAIELDPNEPVFYSNISACYISTGD-LEKVIEFTTKALEIKPDHSKALLRRASANES-LGNFTDAMFDLS-VL 119 (537)
T ss_dssp -CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HTCHHHHHHHHH-HH
T ss_pred HHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCC-HHHHHHHHHHHHhcCCchHHHHHHHHHHHHH-cCCHHHHHHHHH-HH
Confidence 45999999999999999999999999999998 9999999999999999999999999999999 999999999995 88
Q ss_pred hhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc-------------------------------------HHH
Q 045024 86 SLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRA-------------------------------------FWA 128 (1173)
Q Consensus 86 ~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~-------------------------------------~~a 128 (1173)
..+|+....+. ..+...+...+|+..+++++...|.. ...
T Consensus 120 ~~~~~~~~~~~---~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (537)
T 3fp2_A 120 SLNGDFDGASI---EPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALL 196 (537)
T ss_dssp C--------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHH
T ss_pred hcCCCCChHHH---HHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHH
Confidence 88887765532 23334445567777777776653321 112
Q ss_pred HHHHHH--------HHHHcCCHHHHHHHHHHHHHhCCCCHH-------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 045024 129 FRRLGY--------LQLHHKKWSEAVQSLQHAIRGYPTSPH-------LWEALGLAYHRLGMFSAAIKSYGRAIELDDTS 193 (1173)
Q Consensus 129 ~~~la~--------~~~~~g~~~~A~~~l~~al~~~p~~~~-------~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 193 (1173)
...++. .....|++++|+..|+++++.+|+++. ++..+|.++...|++++|+..|+++++.+|+
T Consensus 197 ~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~- 275 (537)
T 3fp2_A 197 SDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPT- 275 (537)
T ss_dssp HHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCC-
Confidence 222222 233346888999999999988888755 4677788888888999999999999998888
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHhhhcC
Q 045024 194 IFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLASGLLGLAKQCINLGAFRWGASLLEDACKVAEANTRLAG 273 (1173)
Q Consensus 194 ~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~l~~~~~a~g~~~~A~~~l~~Al~~~~~~~~~~~ 273 (1173)
..++..+|.++...|++++|+..|+++++.+|+++.++..+|.++...|+ +++|+..++++++ ..+
T Consensus 276 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-------~~~A~~~~~~a~~-------~~~ 341 (537)
T 3fp2_A 276 PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQD-------YKNAKEDFQKAQS-------LNP 341 (537)
T ss_dssp HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-------HHHHHHHHHHHHH-------HCT
T ss_pred chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCC-------HHHHHHHHHHHHH-------hCC
Confidence 88888899999999999999999999999889888888888888887665 3333333322222 223
Q ss_pred ChHHHHHHhchHHHHHhhccchhhhhhchhhhhhhhhhhhHhhHhhhhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 045024 274 NMSCIWKLHGDIQLTYAKCFPWAEERQSLEFDVETFSASIVSWKTTCLMAAISSKSSYQRALYLAPWQANIYTDIAITSD 353 (1173)
Q Consensus 274 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~ 353 (1173)
.....+..+|.++...+ ++++|+..|+++++..|+++.++..+|.++.
T Consensus 342 ~~~~~~~~la~~~~~~g--------------------------------~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 389 (537)
T 3fp2_A 342 ENVYPYIQLACLLYKQG--------------------------------KFTESEAFFNETKLKFPTLPEVPTFFAEILT 389 (537)
T ss_dssp TCSHHHHHHHHHHHHTT--------------------------------CHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcC--------------------------------CHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 22233333333332222 2345555555666666666666666666665
Q ss_pred HHhhHHHhhhhhhhhhHHHHHHHHHHHhhcCCCHHHHHHHHHhhcccHHHHHHHHHHHhcCCCcH------HHHHHHHHH
Q 045024 354 LIYSLNEAYGHYQSAWHVSEKMALGALLLEGDNCQFWVTLGCLSNYNGLKQHALIRGLQLDVSLA------DAWAHIGKL 427 (1173)
Q Consensus 354 ~~g~~~eA~~~~~~~~~~A~k~~~~al~~~p~~~~~~~~Lg~~~~~~~~a~~a~~kal~l~p~~~------~a~~~Lg~~ 427 (1173)
..|++++| ...|+++++.+|+++ ..+..+|.+
T Consensus 390 ~~g~~~~A------------------------------------------~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~ 427 (537)
T 3fp2_A 390 DRGDFDTA------------------------------------------IKQYDIAKRLEEVQEKIHVGIGPLIGKATI 427 (537)
T ss_dssp HTTCHHHH------------------------------------------HHHHHHHHHHHHHCSSCSSTTHHHHHHHHH
T ss_pred HhCCHHHH------------------------------------------HHHHHHHHHcCCcchhhHHHHHHHHHHHHH
Confidence 55555555 444455554444332 335667788
Q ss_pred HHHc----------CCHHHHHHHHHHHHhhCCCChhHHHHhHHHHHHhcCCHHHHHHHHHHHHhcCCchH
Q 045024 428 YGEV----------GEKKLARQAFDSARSIDPSLALPWAGMSADVQASESLVDDAFESCLRAVQILPLAE 487 (1173)
Q Consensus 428 y~~~----------g~~e~A~~~f~~al~~~P~~~~a~~~l~a~~~~~~g~~~eA~~~~~~al~~~p~~~ 487 (1173)
+... |++++|+..|+++++.+|+++.++.. ++.++...|++++|++.|++++++.|...
T Consensus 428 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~-l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 496 (537)
T 3fp2_A 428 LARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIG-LAQLKLQMEKIDEAIELFEDSAILARTMD 496 (537)
T ss_dssp HHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHH-HHHHHHHTTCHHHHHHHHHHHHHHC--CH
T ss_pred HHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHH-HHHHHHHhccHHHHHHHHHHHHHhCCCcH
Confidence 8888 99999999999999999999998888 67799999999999999999999988543
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=4.4e-29 Score=300.83 Aligned_cols=386 Identities=14% Similarity=0.035 Sum_probs=271.7
Q ss_pred CHHHHHHHHHHHHHccCcHHHHHHHHHHHHHh---------CCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhC---
Q 045024 21 DPSLHLDLGLHLWENSESKEKAAEHFVIAAKL---------NPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLS--- 88 (1173)
Q Consensus 21 ~~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~---------~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~--- 88 (1173)
.+..+..+|.++..+|+ +++|++.|++++++ +|....++..+|.+|.. +|++++|+.+|++++++.
T Consensus 50 ~a~~yn~Lg~~~~~~G~-~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~-~g~~~~A~~~~~ka~~i~~~~ 127 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQ-NEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYH-MGRLSDVQIYVDKVKHVCEKF 127 (472)
T ss_dssp CCHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHH-cCChHHHHHHHHHHHHHhHhc
Confidence 35667788888888887 88888888888765 56677788888888888 888888888888888753
Q ss_pred -----CCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHhCCC
Q 045024 89 -----PDDSVSGEALCELLEHG--GKESLEVVVCREASDKSPRAFWAFRRLGYLQLH---HKKWSEAVQSLQHAIRGYPT 158 (1173)
Q Consensus 89 -----p~~~~a~~~La~~~~~~--g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~---~g~~~~A~~~l~~al~~~p~ 158 (1173)
+..+.++..+|..+... +++++|+.+|+++++.+|+++.++..+|.++.. .++.++|+..++++++++|+
T Consensus 128 ~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~ 207 (472)
T 4g1t_A 128 SSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPD 207 (472)
T ss_dssp CCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSS
T ss_pred ccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCc
Confidence 34566777777666554 468888888888888888888888888877544 46677888888888888888
Q ss_pred CHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCHHHHHHH
Q 045024 159 SPHLWEALGLAYHR----LGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGL 234 (1173)
Q Consensus 159 ~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l 234 (1173)
++.++..+|..+.. .|++++|++.+++++..+|.+..++..+|.+|...|++++|+..|+++++.+|++..++..+
T Consensus 208 ~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 287 (472)
T 4g1t_A 208 NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQI 287 (472)
T ss_dssp CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHH
Confidence 88888888766654 45677888888888888888888888888888888888888888888888888888888777
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHhhhcCChHHHHHHhchHHHHHhhccchhhhhhchhhhhhhhhhhhH
Q 045024 235 ASGLLGLAKQCINLGAFRWGASLLEDACKVAEANTRLAGNMSCIWKLHGDIQLTYAKCFPWAEERQSLEFDVETFSASIV 314 (1173)
Q Consensus 235 a~~~~~l~~~~~a~g~~~~A~~~l~~Al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 314 (1173)
|.++...+.........
T Consensus 288 g~~y~~~~~~~~~~~~~--------------------------------------------------------------- 304 (472)
T 4g1t_A 288 GCCYRAKVFQVMNLREN--------------------------------------------------------------- 304 (472)
T ss_dssp HHHHHHHHHHHHHC------------------------------------------------------------------
T ss_pred HHHHHHHHHHhhhHHHH---------------------------------------------------------------
Confidence 77665433310000000
Q ss_pred hhHhhhhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHhhhhhhhhhHHHHHHHHHHHhhcCCCHHHHHHHH
Q 045024 315 SWKTTCLMAAISSKSSYQRALYLAPWQANIYTDIAITSDLIYSLNEAYGHYQSAWHVSEKMALGALLLEGDNCQFWVTLG 394 (1173)
Q Consensus 315 ~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~A~k~~~~al~~~p~~~~~~~~Lg 394 (1173)
..+......+
T Consensus 305 --------------------------------~~~~~~~~~~-------------------------------------- 314 (472)
T 4g1t_A 305 --------------------------------GMYGKRKLLE-------------------------------------- 314 (472)
T ss_dssp -----------------------------------CHHHHHH--------------------------------------
T ss_pred --------------------------------HHHHHHHHHh--------------------------------------
Confidence 0000000000
Q ss_pred HhhcccHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhH---HHHhHHHHHHhcCCHHH
Q 045024 395 CLSNYNGLKQHALIRGLQLDVSLADAWAHIGKLYGEVGEKKLARQAFDSARSIDPSLALP---WAGMSADVQASESLVDD 471 (1173)
Q Consensus 395 ~~~~~~~~a~~a~~kal~l~p~~~~a~~~Lg~~y~~~g~~e~A~~~f~~al~~~P~~~~a---~~~l~a~~~~~~g~~~e 471 (1173)
....+...|+++++.+|.++.++..+|.+|...|++++|+..|+++++++|++... +..++...+...|++++
T Consensus 315 ----~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (472)
T 4g1t_A 315 ----LIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDK 390 (472)
T ss_dssp ----HHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHH
T ss_pred ----hHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHH
Confidence 01233456777777788888888999999999999999999999999988876443 33433334457899999
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 045024 472 AFESCLRAVQILPLAEFQIGLAKLAKLSGHLSSSQVFGAIQQAIQRGPHYPESHNLYGLVCEARSDYQAAVVSYRLARYA 551 (1173)
Q Consensus 472 A~~~~~~al~~~p~~~~~~~la~l~~~~g~~~~~~A~~~l~~al~~~P~~~~a~~~lg~i~~~~g~~~~A~~~~~kAl~l 551 (1173)
|+..|++++++.|........ ...+...++++++.+|+++.++..+|.++...|++++|+++|++|+++
T Consensus 391 Ai~~y~kal~i~~~~~~~~~~-----------~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~ 459 (472)
T 4g1t_A 391 AIHHFIEGVKINQKSREKEKM-----------KDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLES 459 (472)
T ss_dssp HHHHHHHHHHSCCCCHHHHHH-----------HHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC------------
T ss_pred HHHHHHHHHhcCcccHHHHHH-----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 999999999998864322211 124556778899999999999999999999999999999999999766
Q ss_pred hhcCC
Q 045024 552 ISSSS 556 (1173)
Q Consensus 552 ~~~~p 556 (1173)
....|
T Consensus 460 ~~~~p 464 (472)
T 4g1t_A 460 GSLIP 464 (472)
T ss_dssp -----
T ss_pred CCCCC
Confidence 44333
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.6e-28 Score=281.16 Aligned_cols=330 Identities=15% Similarity=0.094 Sum_probs=275.9
Q ss_pred CHHHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 045024 21 DPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCE 100 (1173)
Q Consensus 21 ~~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~ 100 (1173)
++..++.+|..++..|+ +++|+..|+++++.+|+++.+++.+|.++.. .|++++|+..|+++++.+|++..++..+|.
T Consensus 2 ~~~~~~~~~~~~~~~g~-~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQ-LADALSQFHAAVDGDPDNYIAYYRRATVFLA-MGKSKAALPDLTKVIALKMDFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhhCcccHHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhCCCcchHHHHHHH
Confidence 46789999999999998 9999999999999999999999999999999 999999999999999999999999999999
Q ss_pred HHHHCCCHHHHHHHHHHHHhhCC---CcHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 045024 101 LLEHGGKESLEVVVCREASDKSP---RAFWAFRRL------------GYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEA 165 (1173)
Q Consensus 101 ~~~~~g~~~~A~~~~~~al~~~p---~~~~a~~~l------------a~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~ 165 (1173)
++...|++++|+..++++++..| +++.++..+ |.++...|++++|+..++++++.+|.++.++..
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 159 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELREL 159 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHH
Confidence 99999999999999999999999 888888777 789999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHH
Q 045024 166 LGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLASGLLGLAKQC 245 (1173)
Q Consensus 166 la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~l~~~~ 245 (1173)
+|.++...|++++|+..++++++..|.++.++..+|.++...|++++|+..|+++++..|++...+..+..+......
T Consensus 160 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~-- 237 (359)
T 3ieg_A 160 RAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKL-- 237 (359)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHH--
Confidence 999999999999999999999999999999999999999999999999999999999999998765433222100000
Q ss_pred HHhhcHHHHHHHHHHHHHHHHHHhhhcCChHHHHHHhchHHHHHhhccchhhhhhchhhhhhhhhhhhHhhHhhhhHHHH
Q 045024 246 INLGAFRWGASLLEDACKVAEANTRLAGNMSCIWKLHGDIQLTYAKCFPWAEERQSLEFDVETFSASIVSWKTTCLMAAI 325 (1173)
Q Consensus 246 ~a~g~~~~A~~~l~~Al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 325 (1173)
...+..+ ...++++
T Consensus 238 ----------------------------------~~~a~~~--------------------------------~~~~~~~ 251 (359)
T 3ieg_A 238 ----------------------------------IESAEEL--------------------------------IRDGRYT 251 (359)
T ss_dssp ----------------------------------HHHHHHH--------------------------------HHTTCHH
T ss_pred ----------------------------------HHHHHHH--------------------------------HHcCCHH
Confidence 0001111 1122345
Q ss_pred HHHHHHHHHHhcCCCCHHH----HHHHHHHHHHHhhHHHhhhhhhhhhHHHHHHHHHHHhhcCCCHHHHHHHHHhhcccH
Q 045024 326 SSKSSYQRALYLAPWQANI----YTDIAITSDLIYSLNEAYGHYQSAWHVSEKMALGALLLEGDNCQFWVTLGCLSNYNG 401 (1173)
Q Consensus 326 ~A~~~~~~al~l~p~~~~~----~~~la~~~~~~g~~~eA~~~~~~~~~~A~k~~~~al~~~p~~~~~~~~Lg~~~~~~~ 401 (1173)
+|+..|+++++..|+++.. +..+|.++...|++++|
T Consensus 252 ~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A---------------------------------------- 291 (359)
T 3ieg_A 252 DATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEA---------------------------------------- 291 (359)
T ss_dssp HHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHH----------------------------------------
T ss_pred HHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHH----------------------------------------
Confidence 7777888888888877643 44566666666666555
Q ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhHHHHhHHHHH
Q 045024 402 LKQHALIRGLQLDVSLADAWAHIGKLYGEVGEKKLARQAFDSARSIDPSLALPWAGMSADVQ 463 (1173)
Q Consensus 402 ~a~~a~~kal~l~p~~~~a~~~Lg~~y~~~g~~e~A~~~f~~al~~~P~~~~a~~~l~a~~~ 463 (1173)
...|+++++.+|+++.++..+|.+|...|++++|+..|+++++++|+++.++.. ++.+.
T Consensus 292 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~-l~~~~ 350 (359)
T 3ieg_A 292 --IRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREG-LEKAQ 350 (359)
T ss_dssp --HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHH-HHHHH
T ss_pred --HHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHH-HHHHH
Confidence 345666667777778888888888888888888888888888888888777666 44344
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.97 E-value=4.3e-27 Score=270.93 Aligned_cols=306 Identities=16% Similarity=0.107 Sum_probs=259.6
Q ss_pred CHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q 045024 56 NAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYL 135 (1173)
Q Consensus 56 ~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~ 135 (1173)
+++.++.+|..+.. .|++++|+..|+++++.+|+++.++..+|.++...|++++|+..++++++.+|+++.++..+|.+
T Consensus 2 ~~~~~~~~~~~~~~-~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 80 (359)
T 3ieg_A 2 DVEKHLELGKKLLA-AGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHH
Confidence 46789999999999 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCC---CCHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHH
Q 045024 136 QLHHKKWSEAVQSLQHAIRGYP---TSPHLWEAL------------GLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLES 200 (1173)
Q Consensus 136 ~~~~g~~~~A~~~l~~al~~~p---~~~~~~~~l------------a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l 200 (1173)
+...|++++|+..|+++++.+| +++.++..+ |.++...|++++|+..++++++..|+++.++..+
T Consensus 81 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 160 (359)
T 3ieg_A 81 LLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELR 160 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHH
Confidence 9999999999999999999999 888888777 7999999999999999999999999999999999
Q ss_pred HHHHHHcCChHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHhhhcCChHHHHH
Q 045024 201 GNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLASGLLGLAKQCINLGAFRWGASLLEDACKVAEANTRLAGNMSCIWK 280 (1173)
Q Consensus 201 a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~l~~~~~a~g~~~~A~~~l~~Al~~~~~~~~~~~~~~~~~~ 280 (1173)
|.++...|++++|+..++++++..|+++.++..+|.++...|+ ++
T Consensus 161 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~-------~~---------------------------- 205 (359)
T 3ieg_A 161 AECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGD-------HE---------------------------- 205 (359)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTC-------HH----------------------------
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-------HH----------------------------
Confidence 9999999999999999999999999999988888888777655 33
Q ss_pred HhchHHHHHhhccchhhhhhchhhhhhhhhhhhHhhHhhhhHHHHHHHHHHHHHHhcCCCCHHHHH------------HH
Q 045024 281 LHGDIQLTYAKCFPWAEERQSLEFDVETFSASIVSWKTTCLMAAISSKSSYQRALYLAPWQANIYT------------DI 348 (1173)
Q Consensus 281 ~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~------------~l 348 (1173)
+|+..|+++++..|++..++. .+
T Consensus 206 ---------------------------------------------~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (359)
T 3ieg_A 206 ---------------------------------------------LSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIES 240 (359)
T ss_dssp ---------------------------------------------HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred ---------------------------------------------HHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHH
Confidence 344444555555555554433 23
Q ss_pred HHHHHHHhhHHHhhhhhhhhhHHHHHHHHHHHhhcCCCHHHHHHHHHhhcccHHHHHHHHHHHhcCCCcH----HHHHHH
Q 045024 349 AITSDLIYSLNEAYGHYQSAWHVSEKMALGALLLEGDNCQFWVTLGCLSNYNGLKQHALIRGLQLDVSLA----DAWAHI 424 (1173)
Q Consensus 349 a~~~~~~g~~~eA~~~~~~~~~~A~k~~~~al~~~p~~~~~~~~Lg~~~~~~~~a~~a~~kal~l~p~~~----~a~~~L 424 (1173)
|.++...|++++| ...|+++++..|+++ .++..+
T Consensus 241 a~~~~~~~~~~~A------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~l 278 (359)
T 3ieg_A 241 AEELIRDGRYTDA------------------------------------------TSKYESVMKTEPSVAEYTVRSKERI 278 (359)
T ss_dssp HHHHHHTTCHHHH------------------------------------------HHHHHHHHHHCCSSHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHH------------------------------------------HHHHHHHHhcCCCchHHHHHHHHHH
Confidence 4444445554444 445555666666655 346678
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCChhHHHHhHHHHHHhcCCHHHHHHHHHHHHhcCCc
Q 045024 425 GKLYGEVGEKKLARQAFDSARSIDPSLALPWAGMSADVQASESLVDDAFESCLRAVQILPL 485 (1173)
Q Consensus 425 g~~y~~~g~~e~A~~~f~~al~~~P~~~~a~~~l~a~~~~~~g~~~eA~~~~~~al~~~p~ 485 (1173)
|.++...|++++|+..|+++++.+|+++.++.. .+.++...|++++|+..|+++++++|.
T Consensus 279 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~A~~~~~~a~~~~p~ 338 (359)
T 3ieg_A 279 CHCFSKDEKPVEAIRICSEVLQMEPDNVNALKD-RAEAYLIEEMYDEAIQDYEAAQEHNEN 338 (359)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH-HHHHHHHTTCHHHHHHHHHHHHTTCTT
T ss_pred HHHHHHccCHHHHHHHHHHHHHhCcccHHHHHH-HHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 888888888888888888888888888888888 666888888888888888888887764
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.1e-26 Score=279.75 Aligned_cols=385 Identities=14% Similarity=-0.008 Sum_probs=250.3
Q ss_pred CHHHHHHHHHHHHHccCCHHHHHHHHHHHHhh---------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC----
Q 045024 56 NAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSL---------SPDDSVSGEALCELLEHGGKESLEVVVCREASDKS---- 122 (1173)
Q Consensus 56 ~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~---------~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~---- 122 (1173)
.+..+..+|.++.. .|++++|++.|++++++ +|....++..+|.+|..+|++++|+.++++++++.
T Consensus 50 ~a~~yn~Lg~~~~~-~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~ 128 (472)
T 4g1t_A 50 KATMCNLLAYLKHL-KGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFS 128 (472)
T ss_dssp CCHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcc
Confidence 35678889999999 99999999999999876 45666678888888888888888888888887652
Q ss_pred ----CCcHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHhCCCC
Q 045024 123 ----PRAFWAFRRLGYLQLHH--KKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHR---LGMFSAAIKSYGRAIELDDTS 193 (1173)
Q Consensus 123 ----p~~~~a~~~la~~~~~~--g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~---~g~~~~A~~~~~~al~~~p~~ 193 (1173)
+..+.++..+|.++... +++++|+..|+++++++|+++.++..++.++.. .+++++|++.|+++++++|++
T Consensus 129 ~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~ 208 (472)
T 4g1t_A 129 SPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDN 208 (472)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSC
T ss_pred cccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcc
Confidence 23466677777666554 457788888888888888877777777776543 466677777777777777777
Q ss_pred hHHHHHHHHHHHH----cCChHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHh
Q 045024 194 IFPLLESGNIFLM----LGNFRKGVEQFQLALKISSENVSAHYGLASGLLGLAKQCINLGAFRWGASLLEDACKVAEANT 269 (1173)
Q Consensus 194 ~~a~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~l~~~~~a~g~~~~A~~~l~~Al~~~~~~~ 269 (1173)
..++..+|..+.. .|++++|+..|++++..+|+++.++..+|.++...|+
T Consensus 209 ~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~-------------------------- 262 (472)
T 4g1t_A 209 QYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDE-------------------------- 262 (472)
T ss_dssp HHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTC--------------------------
T ss_pred hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCc--------------------------
Confidence 7777777665544 3566777777777777777777777666666665544
Q ss_pred hhcCChHHHHHHhchHHHHHhhccchhhhhhchhhhhhhhhhhhHhhHhhhhHHHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 045024 270 RLAGNMSCIWKLHGDIQLTYAKCFPWAEERQSLEFDVETFSASIVSWKTTCLMAAISSKSSYQRALYLAPWQANIYTDIA 349 (1173)
Q Consensus 270 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la 349 (1173)
+++|+..|+++++.+|+++.++..+|
T Consensus 263 ------------------------------------------------------~~~A~~~~~~al~~~p~~~~~~~~lg 288 (472)
T 4g1t_A 263 ------------------------------------------------------PDKAIELLKKALEYIPNNAYLHCQIG 288 (472)
T ss_dssp ------------------------------------------------------HHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred ------------------------------------------------------hHHHHHHHHHHHHhCCChHHHHHHHH
Confidence 23455666677777777777777777
Q ss_pred HHHHHHhhHHHhhhhhhhhhHHHHHHHHHHHhhcCCCHHHHHHHHHhhcccHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 045024 350 ITSDLIYSLNEAYGHYQSAWHVSEKMALGALLLEGDNCQFWVTLGCLSNYNGLKQHALIRGLQLDVSLADAWAHIGKLYG 429 (1173)
Q Consensus 350 ~~~~~~g~~~eA~~~~~~~~~~A~k~~~~al~~~p~~~~~~~~Lg~~~~~~~~a~~a~~kal~l~p~~~~a~~~Lg~~y~ 429 (1173)
.+|...+....+. .....+....
T Consensus 289 ~~y~~~~~~~~~~---------------------------------------------------------~~~~~~~~~~ 311 (472)
T 4g1t_A 289 CCYRAKVFQVMNL---------------------------------------------------------RENGMYGKRK 311 (472)
T ss_dssp HHHHHHHHHHHHC---------------------------------------------------------------CHHH
T ss_pred HHHHHHHHHhhhH---------------------------------------------------------HHHHHHHHHH
Confidence 7664332221110 0111222223
Q ss_pred HcCCHHHHHHHHHHHHhhCCCChhHHHHhHHHHHHhcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCCChHHHHH
Q 045024 430 EVGEKKLARQAFDSARSIDPSLALPWAGMSADVQASESLVDDAFESCLRAVQILPLAEFQIGLAKLAKLSGHLSSSQVFG 509 (1173)
Q Consensus 430 ~~g~~e~A~~~f~~al~~~P~~~~a~~~l~a~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~la~l~~~~g~~~~~~A~~ 509 (1173)
..+.+++|+..|+++++++|++..++.. +|.++...|++++|++.|++++++.|.+...
T Consensus 312 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~-lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~-------------------- 370 (472)
T 4g1t_A 312 LLELIGHAVAHLKKADEANDNLFRVCSI-LASLHALADQYEEAEYYFQKEFSKELTPVAK-------------------- 370 (472)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTTCCCHHH-HHHHHHHTTCHHHHHHHHHHHHHSCCCHHHH--------------------
T ss_pred HHhhHHHHHHHHHHHhhcCCchhhhhhh-HHHHHHHhccHHHHHHHHHHHHhcCCCChHH--------------------
Confidence 3445789999999999999999999998 6779999999999999999999887743211
Q ss_pred HHHHHHHhCCCCHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHH
Q 045024 510 AIQQAIQRGPHYPESHNLYGLV-CEARSDYQAAVVSYRLARYAISSSSGTVPNSHFQDISINLARSLSRAGNALDAVREC 588 (1173)
Q Consensus 510 ~l~~al~~~P~~~~a~~~lg~i-~~~~g~~~~A~~~~~kAl~l~~~~pe~~~~~~~~~~~~~La~~~~~~g~~~eAi~~~ 588 (1173)
...+..+|.+ ....|++++|+..|++++++ .|++.. ..+....+...+
T Consensus 371 ------------~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i---~~~~~~----------------~~~~~~~l~~~~ 419 (472)
T 4g1t_A 371 ------------QLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI---NQKSRE----------------KEKMKDKLQKIA 419 (472)
T ss_dssp ------------HHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS---CCCCHH----------------HHHHHHHHHHHH
T ss_pred ------------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CcccHH----------------HHHHHHHHHHHH
Confidence 1122333432 34566777777777777433 222100 111223344556
Q ss_pred HHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHhhhcc
Q 045024 589 ESLERQGMLDAEVLQVYAFSLWQLGKYDLALSMARNLASSVS 630 (1173)
Q Consensus 589 ~~~~~~~p~~~~~~~~la~a~~~~g~~~eA~~~~~~aL~~~p 630 (1173)
++.++.+|.++.++..+|.+|...|++++|++.|+++++..|
T Consensus 420 ~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~ 461 (472)
T 4g1t_A 420 KMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGS 461 (472)
T ss_dssp HHHHHHCC-CTTHHHHHHHHHHHHHHCC--------------
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 666677777777777777777777777777777777777655
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=8.2e-26 Score=257.30 Aligned_cols=271 Identities=15% Similarity=0.096 Sum_probs=240.8
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhC
Q 045024 9 LQLEDSLEANPDDPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLS 88 (1173)
Q Consensus 9 ~~l~~al~~~P~~~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~ 88 (1173)
....+.+...|+++..++.+|..++..|+ +++|+..|+++++.+|.+..++..++.++.. .|++++|+..++++++.+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~a~~~~~~g~-~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~-~~~~~~A~~~~~~~~~~~ 86 (330)
T 3hym_B 9 TVIPESVDGLQENLDVVVSLAERHYYNCD-FKMCYKLTSVVMEKDPFHASCLPVHIGTLVE-LNKANELFYLSHKLVDLY 86 (330)
T ss_dssp -----------CCCTTHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCTTTHHHHHHHHHH-HTCHHHHHHHHHHHHHHC
T ss_pred hhhHHHHhhchhhHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHcCCCChhhHHHHHHHHHH-hhhHHHHHHHHHHHHHhC
Confidence 34456677788889999999999999987 9999999999999999999999999999999 999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 045024 89 PDDSVSGEALCELLEHGG-KESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALG 167 (1173)
Q Consensus 89 p~~~~a~~~La~~~~~~g-~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la 167 (1173)
|+++.++..+|.++...| ++++|+..++++++.+|+++.++..+|.++...|++++|+..++++++..|++..++..+|
T Consensus 87 ~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~ 166 (330)
T 3hym_B 87 PSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIG 166 (330)
T ss_dssp TTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHH
Confidence 999999999999999999 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhc---------CCCHHHHHHHHHHH
Q 045024 168 LAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKIS---------SENVSAHYGLASGL 238 (1173)
Q Consensus 168 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~---------p~~~~a~~~la~~~ 238 (1173)
.++...|++++|+..++++++.+|+++.++..+|.++...|++++|+..|+++++.. |....++..+|.++
T Consensus 167 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~ 246 (330)
T 3hym_B 167 LEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVC 246 (330)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999986 55556676777766
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHHHHHHHHHhhhcCChHHHHHHhchHHHHHhhccchhhhhhchhhhhhhhhhhhHhhHh
Q 045024 239 LGLAKQCINLGAFRWGASLLEDACKVAEANTRLAGNMSCIWKLHGDIQLTYAKCFPWAEERQSLEFDVETFSASIVSWKT 318 (1173)
Q Consensus 239 ~~l~~~~~a~g~~~~A~~~l~~Al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 318 (1173)
...|+
T Consensus 247 ~~~g~--------------------------------------------------------------------------- 251 (330)
T 3hym_B 247 RKLKK--------------------------------------------------------------------------- 251 (330)
T ss_dssp HHTTC---------------------------------------------------------------------------
T ss_pred HHhcC---------------------------------------------------------------------------
Confidence 65544
Q ss_pred hhhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHh
Q 045024 319 TCLMAAISSKSSYQRALYLAPWQANIYTDIAITSDLIYSLNEA 361 (1173)
Q Consensus 319 ~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA 361 (1173)
+++|+..|+++++..|+++.++..+|.++...|++++|
T Consensus 252 -----~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A 289 (330)
T 3hym_B 252 -----YAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENA 289 (330)
T ss_dssp -----HHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHH
T ss_pred -----HHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHH
Confidence 23566777777788888888888899888888888777
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.1e-25 Score=256.36 Aligned_cols=310 Identities=15% Similarity=0.047 Sum_probs=257.6
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc
Q 045024 46 FVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRA 125 (1173)
Q Consensus 46 ~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~ 125 (1173)
....+...|+++..+..+|..+.. .|++++|+..|+++++.+|.+..++..++.++...|++++|+..++++++.+|++
T Consensus 11 ~~~~~~~~~~~~~~~~~~a~~~~~-~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~ 89 (330)
T 3hym_B 11 IPESVDGLQENLDVVVSLAERHYY-NCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSN 89 (330)
T ss_dssp ---------CCCTTHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTS
T ss_pred hHHHHhhchhhHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCC
Confidence 345556678888899999999999 9999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 045024 126 FWAFRRLGYLQLHHK-KWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIF 204 (1173)
Q Consensus 126 ~~a~~~la~~~~~~g-~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~ 204 (1173)
+.++..+|.++...| ++++|+..|++++..+|.++.++..+|.++...|++++|+..|+++++..|++..++..+|.++
T Consensus 90 ~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~ 169 (330)
T 3hym_B 90 PVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEY 169 (330)
T ss_dssp THHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 999999999999999 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCChHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHhhhcCChHHHHHHhch
Q 045024 205 LMLGNFRKGVEQFQLALKISSENVSAHYGLASGLLGLAKQCINLGAFRWGASLLEDACKVAEANTRLAGNMSCIWKLHGD 284 (1173)
Q Consensus 205 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~l~~~~~a~g~~~~A~~~l~~Al~~~~~~~~~~~~~~~~~~~~g~ 284 (1173)
...|++++|+..|+++++.+|+++.++..+|.++...|+ +++|...++++++..+.....
T Consensus 170 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~-------~~~A~~~~~~a~~~~~~~~~~------------- 229 (330)
T 3hym_B 170 GLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGE-------WKTAEKWFLDALEKIKAIGNE------------- 229 (330)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTC-------HHHHHHHHHHHHHHHTTTSCS-------------
T ss_pred HHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccc-------HHHHHHHHHHHHHHhhhcccc-------------
Confidence 999999999999999999999999888888877776555 555555555544432211000
Q ss_pred HHHHHhhccchhhhhhchhhhhhhhhhhhHhhHhhhhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHhhhh
Q 045024 285 IQLTYAKCFPWAEERQSLEFDVETFSASIVSWKTTCLMAAISSKSSYQRALYLAPWQANIYTDIAITSDLIYSLNEAYGH 364 (1173)
Q Consensus 285 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~ 364 (1173)
...|..+.++..+|.++...|++++|
T Consensus 230 ---------------------------------------------------~~~~~~~~~~~~la~~~~~~g~~~~A--- 255 (330)
T 3hym_B 230 ---------------------------------------------------VTVDKWEPLLNNLGHVCRKLKKYAEA--- 255 (330)
T ss_dssp ---------------------------------------------------CTTTTCCHHHHHHHHHHHHTTCHHHH---
T ss_pred ---------------------------------------------------ccccHHHHHHHHHHHHHHHhcCHHHH---
Confidence 00155667888888888888877766
Q ss_pred hhhhhHHHHHHHHHHHhhcCCCHHHHHHHHHhhcccHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 045024 365 YQSAWHVSEKMALGALLLEGDNCQFWVTLGCLSNYNGLKQHALIRGLQLDVSLADAWAHIGKLYGEVGEKKLARQAFDSA 444 (1173)
Q Consensus 365 ~~~~~~~A~k~~~~al~~~p~~~~~~~~Lg~~~~~~~~a~~a~~kal~l~p~~~~a~~~Lg~~y~~~g~~e~A~~~f~~a 444 (1173)
...|+++++.+|+++.++..+|.+|...|++++|+..|+++
T Consensus 256 ---------------------------------------~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 296 (330)
T 3hym_B 256 ---------------------------------------LDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTA 296 (330)
T ss_dssp ---------------------------------------HHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTT
T ss_pred ---------------------------------------HHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 34666777777888888888888888889999999999988
Q ss_pred HhhCCCChhHHHHhHHHHH-HhcCCHH
Q 045024 445 RSIDPSLALPWAGMSADVQ-ASESLVD 470 (1173)
Q Consensus 445 l~~~P~~~~a~~~l~a~~~-~~~g~~~ 470 (1173)
++++|+++.++.. ++.++ ...|+.+
T Consensus 297 l~~~p~~~~~~~~-l~~~~~~~~g~~~ 322 (330)
T 3hym_B 297 LGLRRDDTFSVTM-LGHCIEMYIGDSE 322 (330)
T ss_dssp TTTCSCCHHHHHH-HHHHHHTTTTC--
T ss_pred HccCCCchHHHHH-HHHHHHHHhCchh
Confidence 8888888888877 55556 4555543
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.94 E-value=1.6e-23 Score=256.53 Aligned_cols=449 Identities=11% Similarity=0.015 Sum_probs=285.4
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc
Q 045024 46 FVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRA 125 (1173)
Q Consensus 46 ~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~ 125 (1173)
|+++++.+|.+..+|..++.. .. .|++++|...|+++++.+|.+...|..++..+...|++++|...|++++...| +
T Consensus 2 le~al~~~P~~~~~w~~l~~~-~~-~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p-~ 78 (530)
T 2ooe_A 2 AEKKLEENPYDLDAWSILIRE-AQ-NQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVL-H 78 (530)
T ss_dssp HHHHHHHCTTCHHHHHHHHHH-HH-SSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCC-C
T ss_pred hhhHhhhCCCCHHHHHHHHHH-HH-hCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-C
Confidence 567777788888888777774 66 77888888888888888888888888888888778888888888888887777 4
Q ss_pred HHHHHHHHH-HHHHcCCHHHHHH----HHHHHHHh---CCCCHHHHHHHHHHHHH---------cCCHHHHHHHHHHHHH
Q 045024 126 FWAFRRLGY-LQLHHKKWSEAVQ----SLQHAIRG---YPTSPHLWEALGLAYHR---------LGMFSAAIKSYGRAIE 188 (1173)
Q Consensus 126 ~~a~~~la~-~~~~~g~~~~A~~----~l~~al~~---~p~~~~~~~~la~~~~~---------~g~~~~A~~~~~~al~ 188 (1173)
...|..++. .....|++++|.+ .|++++.. +|.+..+|...+..... .|+++.|+..|+++++
T Consensus 79 ~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~ 158 (530)
T 2ooe_A 79 IDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCV 158 (530)
T ss_dssp HHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHh
Confidence 566766664 3344566665554 66666543 45566666666666554 5666666666666666
Q ss_pred hCCCCh--HHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHH
Q 045024 189 LDDTSI--FPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLASGLLGLAKQCINLGAFRWGASLLEDACKVAE 266 (1173)
Q Consensus 189 ~~p~~~--~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~l~~~~~a~g~~~~A~~~l~~Al~~~~ 266 (1173)
.|... ..+...+......|. . .+...+ ....+.+..|...+.+......
T Consensus 159 -~P~~~~~~~~~~~~~~e~~~~~-~----------------------~~~~~l-----~~~~~~~~~A~~~~~~~~~~~~ 209 (530)
T 2ooe_A 159 -NPMINIEQLWRDYNKYEEGINI-H----------------------LAKKMI-----EDRSRDYMNARRVAKEYETVMK 209 (530)
T ss_dssp -SCCTTHHHHHHHHHHHHHHHCH-H----------------------HHHHHH-----HTTHHHHHHHHHHHHHHHHHHH
T ss_pred -chhhhHHHHHHHHHHHHHhhch-h----------------------HHHHHH-----HHhhHHHHHHHHHHHHHHHHHH
Confidence 34332 111111111111110 0 000000 0012334444443333221111
Q ss_pred HHhh----hcCCh-------HHHHHHhchHHHHHhhccchhhhhhchhhhhhhhhhhhHhhHhhhhHHHHHHHHHHHHHH
Q 045024 267 ANTR----LAGNM-------SCIWKLHGDIQLTYAKCFPWAEERQSLEFDVETFSASIVSWKTTCLMAAISSKSSYQRAL 335 (1173)
Q Consensus 267 ~~~~----~~~~~-------~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 335 (1173)
.... ..+.. ...|......... . .. . .. ........++..|++++
T Consensus 210 ~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~--~--------~~-~-----~~--------~~~~~~~~a~~~y~~al 265 (530)
T 2ooe_A 210 GLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKS--N--------PL-R-----TE--------DQTLITKRVMFAYEQCL 265 (530)
T ss_dssp HCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHH--C--------SS-C-----CS--------CSHHHHHHHHHHHHHHH
T ss_pred HhccccccCCCCCChhHHHHHHHHHHHHHHHHc--C--------Cc-c-----CC--------cchhHHHHHHHHHHHHH
Confidence 1110 01110 1122211111100 0 00 0 00 00001236788999999
Q ss_pred hcCCCCHHHHHHHHHHHHH-------HhhHHHhhhhhhhhhHHHHHHHHHHHhhcCCCHHHHHHHHHhhcccHHHHHHHH
Q 045024 336 YLAPWQANIYTDIAITSDL-------IYSLNEAYGHYQSAWHVSEKMALGALLLEGDNCQFWVTLGCLSNYNGLKQHALI 408 (1173)
Q Consensus 336 ~l~p~~~~~~~~la~~~~~-------~g~~~eA~~~~~~~~~~A~k~~~~al~~~p~~~~~~~~Lg~~~~~~~~a~~a~~ 408 (1173)
...|.++.+|..++..+.. .|+++.|.. ....+...|+
T Consensus 266 ~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~-----------------------------------~~~~A~~~~~ 310 (530)
T 2ooe_A 266 LVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKL-----------------------------------FSDEAANIYE 310 (530)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHH-----------------------------------HHHHHHHHHH
T ss_pred HhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhh-----------------------------------hhHHHHHHHH
Confidence 9999999999999998875 344432200 0135677899
Q ss_pred HHHh-cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCh-hHHHHhHHHHHHhcCCHHHHHHHHHHHHhcCCch
Q 045024 409 RGLQ-LDVSLADAWAHIGKLYGEVGEKKLARQAFDSARSIDPSLA-LPWAGMSADVQASESLVDDAFESCLRAVQILPLA 486 (1173)
Q Consensus 409 kal~-l~p~~~~a~~~Lg~~y~~~g~~e~A~~~f~~al~~~P~~~-~a~~~l~a~~~~~~g~~~eA~~~~~~al~~~p~~ 486 (1173)
++++ ..|+++.+|..+|.++...|++++|...|+++++++|+++ .+|.. .+..+.+.|++++|++.|+++++..|
T Consensus 311 ~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~-~~~~~~~~~~~~~A~~~~~~Al~~~~-- 387 (530)
T 2ooe_A 311 RAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQ-YMKFARRAEGIKSGRMIFKKAREDAR-- 387 (530)
T ss_dssp HHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHTCTT--
T ss_pred HHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHH-HHHHHHHhcCHHHHHHHHHHHHhccC--
Confidence 9997 7999999999999999999999999999999999999985 58888 56677788999999988888877654
Q ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHHhhcCCCCCCCCchH
Q 045024 487 EFQIGLAKLAKLSGHLSSSQVFGAIQQAIQRGPHYPESHNLYGLV-CEARSDYQAAVVSYRLARYAISSSSGTVPNSHFQ 565 (1173)
Q Consensus 487 ~~~~~la~l~~~~g~~~~~~A~~~l~~al~~~P~~~~a~~~lg~i-~~~~g~~~~A~~~~~kAl~l~~~~pe~~~~~~~~ 565 (1173)
.....+...+.+ +...|++++|+.+|+++++. .|+ ..
T Consensus 388 ---------------------------------~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~---~p~------~~ 425 (530)
T 2ooe_A 388 ---------------------------------TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK---YGD------IP 425 (530)
T ss_dssp ---------------------------------CCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH---HTT------CH
T ss_pred ---------------------------------CchHHHHHHHHHHHHHcCChhHHHHHHHHHHHH---CCC------CH
Confidence 233333344443 33578888888888888654 232 23
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHH----HHHHHHHHHHHcCChHHHHHHHHHHhhhcc
Q 045024 566 DISINLARSLSRAGNALDAVRECESLERQGMLDAE----VLQVYAFSLWQLGKYDLALSMARNLASSVS 630 (1173)
Q Consensus 566 ~~~~~La~~~~~~g~~~eAi~~~~~~~~~~p~~~~----~~~~la~a~~~~g~~~eA~~~~~~aL~~~p 630 (1173)
.++..++..+...|++++|...|++++...|.++. .|...+......|+.+.+..+++++++..|
T Consensus 426 ~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p 494 (530)
T 2ooe_A 426 EYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFR 494 (530)
T ss_dssp HHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 47788888888888888888888888877665543 666667777778888888888888888776
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.94 E-value=6.9e-23 Score=250.98 Aligned_cols=427 Identities=12% Similarity=0.036 Sum_probs=264.5
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCC
Q 045024 11 LEDSLEANPDDPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPD 90 (1173)
Q Consensus 11 l~~al~~~P~~~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~ 90 (1173)
|+++++.+|.+..+|..++.. ...++ +++|...|+++++.+|.++..|..+|..+.. .|++++|...|++++...|
T Consensus 2 le~al~~~P~~~~~w~~l~~~-~~~~~-~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~-~~~~~~a~~~~~ral~~~p- 77 (530)
T 2ooe_A 2 AEKKLEENPYDLDAWSILIRE-AQNQP-IDKARKTYERLVAQFPSSGRFWKLYIEAEIK-AKNYDKVEKLFQRCLMKVL- 77 (530)
T ss_dssp HHHHHHHCTTCHHHHHHHHHH-HHSSC-HHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTCC-
T ss_pred hhhHhhhCCCCHHHHHHHHHH-HHhCC-HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHhcCC-
Confidence 688999999999999999984 66666 9999999999999999999999999999999 9999999999999999999
Q ss_pred CHHHHHHHHH-HHHHCCCHHHHHH----HHHHHHhh---CCCcHHHHHHHHHHHHH---------cCCHHHHHHHHHHHH
Q 045024 91 DSVSGEALCE-LLEHGGKESLEVV----VCREASDK---SPRAFWAFRRLGYLQLH---------HKKWSEAVQSLQHAI 153 (1173)
Q Consensus 91 ~~~a~~~La~-~~~~~g~~~~A~~----~~~~al~~---~p~~~~a~~~la~~~~~---------~g~~~~A~~~l~~al 153 (1173)
+...|..++. +....|++++|.+ .|++++.. +|.+...|...+..... .|++++|..+|++++
T Consensus 78 ~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al 157 (530)
T 2ooe_A 78 HIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGC 157 (530)
T ss_dssp CHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHH
Confidence 6778888885 4456788877765 77777654 56678888888887765 789999999999999
Q ss_pred HhCCCCH--HHHHHHHHHH-------------HHcCCHHHHHHHHHH------HHHh-----CCCC-------hHHHHHH
Q 045024 154 RGYPTSP--HLWEALGLAY-------------HRLGMFSAAIKSYGR------AIEL-----DDTS-------IFPLLES 200 (1173)
Q Consensus 154 ~~~p~~~--~~~~~la~~~-------------~~~g~~~~A~~~~~~------al~~-----~p~~-------~~a~~~l 200 (1173)
. .|... ..|....... ...+++..|...+.. .++. .|.. ...|...
T Consensus 158 ~-~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~ 236 (530)
T 2ooe_A 158 V-NPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKY 236 (530)
T ss_dssp T-SCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHH
T ss_pred h-chhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHH
Confidence 9 57542 3333322221 134567888877765 3332 2321 2344443
Q ss_pred HHHHHHc----CCh----HHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHhh-h
Q 045024 201 GNIFLML----GNF----RKGVEQFQLALKISSENVSAHYGLASGLLGLAKQCINLGAFRWGASLLEDACKVAEANTR-L 271 (1173)
Q Consensus 201 a~~~~~~----g~~----~~A~~~~~~al~~~p~~~~a~~~la~~~~~l~~~~~a~g~~~~A~~~l~~Al~~~~~~~~-~ 271 (1173)
....... ++. .+++..|++++...|.++.+|+.++..+..........|+++.|....++|...+.+... .
T Consensus 237 ~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~ 316 (530)
T 2ooe_A 237 IQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTL 316 (530)
T ss_dssp HHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHcCCccCCcchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHh
Confidence 3332221 232 478899999999999999999999998876433222345554332222233333333332 2
Q ss_pred cCChHHHHHHhchHHHHHhhccchhhhhhchhhhhhhhhhhhHhhHhhhhHHHHHHHHHHHHHHhcCCCCH-HHHHHHHH
Q 045024 272 AGNMSCIWKLHGDIQLTYAKCFPWAEERQSLEFDVETFSASIVSWKTTCLMAAISSKSSYQRALYLAPWQA-NIYTDIAI 350 (1173)
Q Consensus 272 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~-~~~~~la~ 350 (1173)
.|....+|...+.+....++ .++|+..|+++++..|.++ .+|...+.
T Consensus 317 ~p~~~~l~~~~~~~~~~~g~--------------------------------~~~A~~~~~~al~~~p~~~~~~~~~~~~ 364 (530)
T 2ooe_A 317 LKKNMLLYFAYADYEESRMK--------------------------------YEKVHSIYNRLLAIEDIDPTLVYIQYMK 364 (530)
T ss_dssp CSSCHHHHHHHHHHHHHTTC--------------------------------HHHHHHHHHHHHHSSSSCHHHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHhcCC--------------------------------HHHHHHHHHHHhCccccCchHHHHHHHH
Confidence 34444444444433322221 3344455555555444443 34444444
Q ss_pred HHHHHhhHHHhhhhhhhhhHHHHHHHHHHHhhcCCCHHHHHHHHHhhcccHHHHHHHHHHHhcCCCcHHHHHHHHHH-HH
Q 045024 351 TSDLIYSLNEAYGHYQSAWHVSEKMALGALLLEGDNCQFWVTLGCLSNYNGLKQHALIRGLQLDVSLADAWAHIGKL-YG 429 (1173)
Q Consensus 351 ~~~~~g~~~eA~~~~~~~~~~A~k~~~~al~~~p~~~~~~~~Lg~~~~~~~~a~~a~~kal~l~p~~~~a~~~Lg~~-y~ 429 (1173)
.+.+.|+++ .+...|.++++..|.....+...+.+ +.
T Consensus 365 ~~~~~~~~~------------------------------------------~A~~~~~~Al~~~~~~~~~~~~~a~~~~~ 402 (530)
T 2ooe_A 365 FARRAEGIK------------------------------------------SGRMIFKKAREDARTRHHVYVTAALMEYY 402 (530)
T ss_dssp HHHHHHHHH------------------------------------------HHHHHHHHHHTCTTCCTHHHHHHHHHHHH
T ss_pred HHHHhcCHH------------------------------------------HHHHHHHHHHhccCCchHHHHHHHHHHHH
Confidence 444444444 34445555555555444444444433 22
Q ss_pred HcCCHHHHHHHHHHHHhhCCCChhHHHHhHHHHHHhcCCHHHHHHHHHHHHhcCCc-h----HHHHHHHHHHHHhCCCCh
Q 045024 430 EVGEKKLARQAFDSARSIDPSLALPWAGMSADVQASESLVDDAFESCLRAVQILPL-A----EFQIGLAKLAKLSGHLSS 504 (1173)
Q Consensus 430 ~~g~~e~A~~~f~~al~~~P~~~~a~~~l~a~~~~~~g~~~eA~~~~~~al~~~p~-~----~~~~~la~l~~~~g~~~~ 504 (1173)
..|++++|...|+++++.+|+++..|.. .+..+...|+.++|..+|++++...|. + ..+..+..+....|+ .
T Consensus 403 ~~~~~~~A~~~~e~al~~~p~~~~~~~~-~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~--~ 479 (530)
T 2ooe_A 403 CSKDKSVAFKIFELGLKKYGDIPEYVLA-YIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGD--L 479 (530)
T ss_dssp HTCCHHHHHHHHHHHHHHHTTCHHHHHH-HHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSC--H
T ss_pred HcCChhHHHHHHHHHHHHCCCCHHHHHH-HHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCC--H
Confidence 3555555555555555555555555555 344555555555555555555555331 1 133333444333343 3
Q ss_pred HHHHHHHHHHHHhCC
Q 045024 505 SQVFGAIQQAIQRGP 519 (1173)
Q Consensus 505 ~~A~~~l~~al~~~P 519 (1173)
+.+...++++++..|
T Consensus 480 ~~~~~~~~r~~~~~p 494 (530)
T 2ooe_A 480 ASILKVEKRRFTAFR 494 (530)
T ss_dssp HHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHCc
Confidence 455555555555555
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.94 E-value=2.4e-25 Score=258.28 Aligned_cols=303 Identities=18% Similarity=0.128 Sum_probs=247.3
Q ss_pred HHHHccCcHHHHHH-HHHHHHHhCCCCH----HHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHC
Q 045024 31 HLWENSESKEKAAE-HFVIAAKLNPQNA----VAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHG 105 (1173)
Q Consensus 31 ~~~~~~~~~~~A~~-~~~~al~~~p~~~----~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~~ 105 (1173)
++...++ |++|+. .|++++...|+++ ..++.+|.++.. .|++++|+..|+++++.+|++..++..+|.++...
T Consensus 34 ~~~~~~~-~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 111 (368)
T 1fch_A 34 AHPWLSD-YDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQ-EGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAEN 111 (368)
T ss_dssp -------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHH-TTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHT
T ss_pred hhHHHHH-HHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHH-CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Confidence 4555566 999999 9999998888764 568899999999 99999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH----------------HHHHH
Q 045024 106 GKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWE----------------ALGLA 169 (1173)
Q Consensus 106 g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~----------------~la~~ 169 (1173)
|++++|+..++++++.+|+++.++..+|.++...|++++|+..+++++..+|.+...+. .++.+
T Consensus 112 g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (368)
T 1fch_A 112 EQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSL 191 (368)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHH
T ss_pred cCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999998776654 46666
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCC--ChHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHH
Q 045024 170 YHRLGMFSAAIKSYGRAIELDDT--SIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLASGLLGLAKQCIN 247 (1173)
Q Consensus 170 ~~~~g~~~~A~~~~~~al~~~p~--~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~l~~~~~a 247 (1173)
+ ..|++++|+..|+++++.+|+ ++.++..+|.++...|++++|+..|+++++.+|+++.++..+|.++...|+
T Consensus 192 ~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~---- 266 (368)
T 1fch_A 192 L-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQ---- 266 (368)
T ss_dssp H-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC----
T ss_pred h-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCC----
Confidence 6 899999999999999999999 789999999999999999999999999999999998888888777776555
Q ss_pred hhcHHHHHHHHHHHHHHHHHHhhhcCChHHHHHHhchHHHHHhhccchhhhhhchhhhhhhhhhhhHhhHhhhhHHHHHH
Q 045024 248 LGAFRWGASLLEDACKVAEANTRLAGNMSCIWKLHGDIQLTYAKCFPWAEERQSLEFDVETFSASIVSWKTTCLMAAISS 327 (1173)
Q Consensus 248 ~g~~~~A~~~l~~Al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~A 327 (1173)
+++|
T Consensus 267 ----------------------------------------------------------------------------~~~A 270 (368)
T 1fch_A 267 ----------------------------------------------------------------------------SEEA 270 (368)
T ss_dssp ----------------------------------------------------------------------------HHHH
T ss_pred ----------------------------------------------------------------------------HHHH
Confidence 2356
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHhhhhhhhhhHHHHHHHHHHHhhcCCCHHHHHHHHHhhcccHHHHHHH
Q 045024 328 KSSYQRALYLAPWQANIYTDIAITSDLIYSLNEAYGHYQSAWHVSEKMALGALLLEGDNCQFWVTLGCLSNYNGLKQHAL 407 (1173)
Q Consensus 328 ~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~A~k~~~~al~~~p~~~~~~~~Lg~~~~~~~~a~~a~ 407 (1173)
+..|+++++++|+++.++..+|.++...|++++|.. .+.+++...|++....
T Consensus 271 ~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~-----------~~~~al~~~~~~~~~~----------------- 322 (368)
T 1fch_A 271 VAAYRRALELQPGYIRSRYNLGISCINLGAHREAVE-----------HFLEALNMQRKSRGPR----------------- 322 (368)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH-----------HHHHHHHHHHTC---------------------
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHH-----------HHHHHHHhCCCCCCcc-----------------
Confidence 677788888889999999999999999999988833 3444444444432100
Q ss_pred HHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 045024 408 IRGLQLDVSLADAWAHIGKLYGEVGEKKLARQAFDSARSI 447 (1173)
Q Consensus 408 ~kal~l~p~~~~a~~~Lg~~y~~~g~~e~A~~~f~~al~~ 447 (1173)
-...|..+.+|..+|.+|...|++++|...++++++.
T Consensus 323 ---~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 359 (368)
T 1fch_A 323 ---GEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLST 359 (368)
T ss_dssp -----CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCHHH
T ss_pred ---ccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHHHH
Confidence 0113344899999999999999999999999877654
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.93 E-value=2.8e-22 Score=242.99 Aligned_cols=399 Identities=14% Similarity=0.081 Sum_probs=251.1
Q ss_pred CCCHHHHHHHHHHHHH----ccCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---ccCCHHHHHHHHHHHHhhCCCC
Q 045024 19 PDDPSLHLDLGLHLWE----NSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTR---FSIDTQRAIKCYQRAVSLSPDD 91 (1173)
Q Consensus 19 P~~~~~~~~lg~~~~~----~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~---~~g~~~eA~~~~~~al~~~p~~ 91 (1173)
++++.+++.+|..|.. .++ +++|+.+|+++++. .++.+++.+|.+|.. ..+++++|+.+|+++.+. .+
T Consensus 36 ~g~~~a~~~lg~~y~~g~~~~~~-~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~ 110 (490)
T 2xm6_A 36 SGEAKAQLELGYRYFQGNETTKD-LTQAMDWFRRAAEQ--GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK--GL 110 (490)
T ss_dssp TTCHHHHHHHHHHHHHTSSSCCC-HHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TC
T ss_pred CCCHHHHHHHHHHHHcCCCCCcC-HHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CC
Confidence 4566666777766665 444 66777777766654 456666667766654 135666777777766653 45
Q ss_pred HHHHHHHHHHHHH----CCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHH
Q 045024 92 SVSGEALCELLEH----GGKESLEVVVCREASDKSPRAFWAFRRLGYLQLH----HKKWSEAVQSLQHAIRGYPTSPHLW 163 (1173)
Q Consensus 92 ~~a~~~La~~~~~----~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~----~g~~~~A~~~l~~al~~~p~~~~~~ 163 (1173)
+.+++.+|.+|.. .+++++|+..|+++.+. +++.+++.+|.+|.. .+++++|+..|+++++. +++.++
T Consensus 111 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~--~~~~a~ 186 (490)
T 2xm6_A 111 PQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ--GRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ--GNVWSC 186 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHH
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHH
Confidence 6666666766666 66677777777666553 456666666766666 66677777777666654 456666
Q ss_pred HHHHHHHHH----cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH----cCChHHHHHHHHHHHhhcCCCHHHHHHHH
Q 045024 164 EALGLAYHR----LGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLM----LGNFRKGVEQFQLALKISSENVSAHYGLA 235 (1173)
Q Consensus 164 ~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~a~~~la 235 (1173)
+.+|.+|.. .+++++|+..|+++.+. +++.+++.+|.+|.. .+++++|+.+|+++.+. .++.+.+.++
T Consensus 187 ~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg 262 (490)
T 2xm6_A 187 NQLGYMYSRGLGVERNDAISAQWYRKSATS--GDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQ--GNSIAQFRLG 262 (490)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTT--TCHHHHHHHH
T ss_pred HHHHHHHhcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHH
Confidence 667776666 66677777777666653 355666666666665 66666777666666553 3344444444
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHhhhcCChHHHHHHhchHHHHHhhccchhhhhhchhhhhhhhhhhhHh
Q 045024 236 SGLLGLAKQCINLGAFRWGASLLEDACKVAEANTRLAGNMSCIWKLHGDIQLTYAKCFPWAEERQSLEFDVETFSASIVS 315 (1173)
Q Consensus 236 ~~~~~l~~~~~a~g~~~~A~~~l~~Al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 315 (1173)
.++.. |.
T Consensus 263 ~~y~~-g~------------------------------------------------------------------------ 269 (490)
T 2xm6_A 263 YILEQ-GL------------------------------------------------------------------------ 269 (490)
T ss_dssp HHHHH-TT------------------------------------------------------------------------
T ss_pred HHHHC-CC------------------------------------------------------------------------
Confidence 44332 00
Q ss_pred hHhhhhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH-----hhHHHhhhhhhhhhHHHHHHHHHHHhhcCCCHHHH
Q 045024 316 WKTTCLMAAISSKSSYQRALYLAPWQANIYTDIAITSDLI-----YSLNEAYGHYQSAWHVSEKMALGALLLEGDNCQFW 390 (1173)
Q Consensus 316 ~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~-----g~~~eA~~~~~~~~~~A~k~~~~al~~~p~~~~~~ 390 (1173)
...++.++|+..|+++.+. .++.+++.++.++... ++++
T Consensus 270 ---~~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~~~~g~~~~~~------------------------------- 313 (490)
T 2xm6_A 270 ---AGAKEPLKALEWYRKSAEQ--GNSDGQYYLAHLYDKGAEGVAKNRE------------------------------- 313 (490)
T ss_dssp ---TSSCCHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHCBTTBCCCHH-------------------------------
T ss_pred ---CCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCCcCCHH-------------------------------
Confidence 0001133566666666544 4566666666666543 2332
Q ss_pred HHHHHhhcccHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhhCCCChhHHHHhHHHHHHh--
Q 045024 391 VTLGCLSNYNGLKQHALIRGLQLDVSLADAWAHIGKLYGEVG---EKKLARQAFDSARSIDPSLALPWAGMSADVQAS-- 465 (1173)
Q Consensus 391 ~~Lg~~~~~~~~a~~a~~kal~l~p~~~~a~~~Lg~~y~~~g---~~e~A~~~f~~al~~~P~~~~a~~~l~a~~~~~-- 465 (1173)
.+.+.|+++++. +++.+++.+|.+|...| ++++|+.+|+++++. .++.+++. ++.+|..
T Consensus 314 -----------~A~~~~~~a~~~--~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~-Lg~~y~~g~ 377 (490)
T 2xm6_A 314 -----------QAISWYTKSAEQ--GDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK--GEKAAQFN-LGNALLQGK 377 (490)
T ss_dssp -----------HHHHHHHHHHHT--TCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT--TCHHHHHH-HHHHHHHTS
T ss_pred -----------HHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC--CCHHHHHH-HHHHHHcCC
Confidence 334455555553 35677777777777755 677788888877765 45667777 5556666
Q ss_pred --cCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHH
Q 045024 466 --ESLVDDAFESCLRAVQILPLAEFQIGLAKLAKLSGHLSSSQVFGAIQQAIQRGPHYPESHNLYGLVCEA----RSDYQ 539 (1173)
Q Consensus 466 --~g~~~eA~~~~~~al~~~p~~~~~~~la~l~~~~g~~~~~~A~~~l~~al~~~P~~~~a~~~lg~i~~~----~g~~~ 539 (1173)
.+++++|+.+|+++++ .+++.+++.+|.+|.. .++++
T Consensus 378 g~~~~~~~A~~~~~~A~~-------------------------------------~~~~~a~~~Lg~~y~~g~g~~~d~~ 420 (490)
T 2xm6_A 378 GVKKDEQQAAIWMRKAAE-------------------------------------QGLSAAQVQLGEIYYYGLGVERDYV 420 (490)
T ss_dssp SSCCCHHHHHHHHHHHHH-------------------------------------TTCHHHHHHHHHHHHHTSSSCCCHH
T ss_pred CCCCCHHHHHHHHHHHHh-------------------------------------CCCHHHHHHHHHHHHcCCCCCCCHH
Confidence 6677777776666543 2457889999999998 89999
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHH
Q 045024 540 AAVVSYRLARYAISSSSGTVPNSHFQDISINLARSLSRAGNALDAVRECESLERQGMLDAE 600 (1173)
Q Consensus 540 ~A~~~~~kAl~l~~~~pe~~~~~~~~~~~~~La~~~~~~g~~~eAi~~~~~~~~~~p~~~~ 600 (1173)
+|+.+|+++++.- |+ .|....+..+++.++.. +.+.|.+...+..+..|....
T Consensus 421 ~A~~~~~~A~~~~---~~---~~~~~~a~~~l~~~~~~--~~~~a~~~a~~~~~~~~~~~~ 473 (490)
T 2xm6_A 421 QAWAWFDTASTND---MN---LFGTENRNITEKKLTAK--QLQQAELLSQQYIEKYAPEAW 473 (490)
T ss_dssp HHHHHHHHHHHHH---CC---HHHHHHHHHHHTTSCHH--HHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHHHHHHCC---CC---CcCCHHHHHHHHhcCHh--HHHHHHHHHHHHHHHHHHHHH
Confidence 9999999997552 11 12345577888877654 445666666666665555443
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.93 E-value=2.2e-22 Score=243.90 Aligned_cols=403 Identities=13% Similarity=0.026 Sum_probs=305.7
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHH---ccCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----CCCHHHHHH
Q 045024 41 KAAEHFVIAAKLNPQNAVAFRYLGHYYTR---FSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEH----GGKESLEVV 113 (1173)
Q Consensus 41 ~A~~~~~~al~~~p~~~~a~~~lg~~~~~---~~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~----~g~~~~A~~ 113 (1173)
.++..+.++. .+.++.+++.+|.+|.. ..+++++|+.+|+++.+. +++.+++.+|.+|.. .+++++|+.
T Consensus 25 ~~~~~~~~~a--~~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~ 100 (490)
T 2xm6_A 25 VNLEQLKQKA--ESGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ--GYTPAEYVLGLRYMNGEGVPQDYAQAVI 100 (490)
T ss_dssp CCHHHHHHHH--HTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred HHHHHHHHHH--HCCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 3456666654 36789999999999875 147899999999999876 678899999999999 899999999
Q ss_pred HHHHHHhhCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHH
Q 045024 114 VCREASDKSPRAFWAFRRLGYLQLH----HKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHR----LGMFSAAIKSYGR 185 (1173)
Q Consensus 114 ~~~~al~~~p~~~~a~~~la~~~~~----~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~ 185 (1173)
.|+++.+. .++.+++.+|.+|.. .+++++|+..|+++.+. +++.++..+|.+|.. .+++++|+..|++
T Consensus 101 ~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~ 176 (490)
T 2xm6_A 101 WYKKAALK--GLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ--GRDSGQQSMGDAYFEGDGVTRDYVMAREWYSK 176 (490)
T ss_dssp HHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHH
T ss_pred HHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 99999875 578899999999998 88999999999999775 578999999999998 8899999999999
Q ss_pred HHHhCCCChHHHHHHHHHHHH----cCChHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHH
Q 045024 186 AIELDDTSIFPLLESGNIFLM----LGNFRKGVEQFQLALKISSENVSAHYGLASGLLGLAKQCINLGAFRWGASLLEDA 261 (1173)
Q Consensus 186 al~~~p~~~~a~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~l~~~~~a~g~~~~A~~~l~~A 261 (1173)
+++. +++.+++.+|.+|.. .+++++|+.+|+++.+. .++.+.+.++.++..-.. ..++
T Consensus 177 a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~g---~~~~----------- 238 (490)
T 2xm6_A 177 AAEQ--GNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATS--GDELGQLHLADMYYFGIG---VTQD----------- 238 (490)
T ss_dssp HHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSS---SCCC-----------
T ss_pred HHHC--CCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCC---CCCC-----------
Confidence 9886 578999999999998 89999999999999875 456666666665543000 0111
Q ss_pred HHHHHHHhhhcCChHHHHHHhchHHHHHhhccchhhhhhchhhhhhhhhhhhHhhHhhhhHHHHHHHHHHHHHHhcCCCC
Q 045024 262 CKVAEANTRLAGNMSCIWKLHGDIQLTYAKCFPWAEERQSLEFDVETFSASIVSWKTTCLMAAISSKSSYQRALYLAPWQ 341 (1173)
Q Consensus 262 l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~ 341 (1173)
.++|+..|+++++. .+
T Consensus 239 --------------------------------------------------------------~~~A~~~~~~a~~~--~~ 254 (490)
T 2xm6_A 239 --------------------------------------------------------------YTQSRVLFSQSAEQ--GN 254 (490)
T ss_dssp --------------------------------------------------------------HHHHHHHHHHHHTT--TC
T ss_pred --------------------------------------------------------------HHHHHHHHHHHHHC--CC
Confidence 23566666666654 45
Q ss_pred HHHHHHHHHHHHH----HhhHHHhhhhhhhhhHHHHHHHHHHHhhcCCCHHHHHHHHHhhcccHHHHHHHHHHHhcCCCc
Q 045024 342 ANIYTDIAITSDL----IYSLNEAYGHYQSAWHVSEKMALGALLLEGDNCQFWVTLGCLSNYNGLKQHALIRGLQLDVSL 417 (1173)
Q Consensus 342 ~~~~~~la~~~~~----~g~~~eA~~~~~~~~~~A~k~~~~al~~~p~~~~~~~~Lg~~~~~~~~a~~a~~kal~l~p~~ 417 (1173)
+.+++.+|.++.. .+++ ..+.+.|+++.+. ++
T Consensus 255 ~~a~~~lg~~y~~g~~~~~d~------------------------------------------~~A~~~~~~a~~~--~~ 290 (490)
T 2xm6_A 255 SIAQFRLGYILEQGLAGAKEP------------------------------------------LKALEWYRKSAEQ--GN 290 (490)
T ss_dssp HHHHHHHHHHHHHTTTSSCCH------------------------------------------HHHHHHHHHHHTT--TC
T ss_pred HHHHHHHHHHHHCCCCCCCCH------------------------------------------HHHHHHHHHHHHc--CC
Confidence 6677777777654 2333 2334556666543 46
Q ss_pred HHHHHHHHHHHHHc-----CCHHHHHHHHHHHHhhCCCChhHHHHhHHHHHHhcC---CHHHHHHHHHHHHhcCCchHHH
Q 045024 418 ADAWAHIGKLYGEV-----GEKKLARQAFDSARSIDPSLALPWAGMSADVQASES---LVDDAFESCLRAVQILPLAEFQ 489 (1173)
Q Consensus 418 ~~a~~~Lg~~y~~~-----g~~e~A~~~f~~al~~~P~~~~a~~~l~a~~~~~~g---~~~eA~~~~~~al~~~p~~~~~ 489 (1173)
+.+++.+|.+|... +++++|+.+|+++.+. .++.+++. ++.+|...| ++++|+.+|+++
T Consensus 291 ~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~-lg~~y~~~g~~~~~~~A~~~~~~a---------- 357 (490)
T 2xm6_A 291 SDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ--GDATAQAN-LGAIYFRLGSEEEHKKAVEWFRKA---------- 357 (490)
T ss_dssp HHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT--TCHHHHHH-HHHHHHHSCCHHHHHHHHHHHHHH----------
T ss_pred HHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc--CCHHHHHH-HHHHHHhCCCcccHHHHHHHHHHH----------
Confidence 77888888888887 8888888888888775 44567766 555666545 455555555544
Q ss_pred HHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHhhcCCCCCCCCchH
Q 045024 490 IGLAKLAKLSGHLSSSQVFGAIQQAIQRGPHYPESHNLYGLVCEA----RSDYQAAVVSYRLARYAISSSSGTVPNSHFQ 565 (1173)
Q Consensus 490 ~~la~l~~~~g~~~~~~A~~~l~~al~~~P~~~~a~~~lg~i~~~----~g~~~~A~~~~~kAl~l~~~~pe~~~~~~~~ 565 (1173)
++. +++.+++.+|.+|.. .+++++|+.+|+++.+. + ..
T Consensus 358 -------------------------~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~-----~------~~ 399 (490)
T 2xm6_A 358 -------------------------AAK--GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQ-----G------LS 399 (490)
T ss_dssp -------------------------HHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-----T------CH
T ss_pred -------------------------HHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhC-----C------CH
Confidence 443 568899999999999 89999999999999642 1 24
Q ss_pred HHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCC---CHHHHHHHHHHHHHcCChHHHHHHHHHHhhhcc
Q 045024 566 DISINLARSLSR----AGNALDAVRECESLERQGML---DAEVLQVYAFSLWQLGKYDLALSMARNLASSVS 630 (1173)
Q Consensus 566 ~~~~~La~~~~~----~g~~~eAi~~~~~~~~~~p~---~~~~~~~la~a~~~~g~~~eA~~~~~~aL~~~p 630 (1173)
.+++++|.+|.. .+++++|+..|+++++.+|+ ++.+...+|.++.. +.+.|.+..++.++..|
T Consensus 400 ~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~~--~~~~a~~~a~~~~~~~~ 469 (490)
T 2xm6_A 400 AAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLTAK--QLQQAELLSQQYIEKYA 469 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCHH--HHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCHh--HHHHHHHHHHHHHHHHH
Confidence 589999999998 89999999999999999854 77788888877654 34555555555555433
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.93 E-value=1.1e-24 Score=252.56 Aligned_cols=290 Identities=16% Similarity=0.224 Sum_probs=250.6
Q ss_pred HHH-HHHHHHHhCCCCH----HHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHH
Q 045024 7 LLL-QLEDSLEANPDDP----SLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCY 81 (1173)
Q Consensus 7 Ai~-~l~~al~~~P~~~----~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~ 81 (1173)
|+. .|++++...|+++ ..++.+|.++...|+ +++|+..|+++++.+|+++.++..+|.++.. .|++++|+..|
T Consensus 44 a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-~g~~~~A~~~~ 121 (368)
T 1fch_A 44 LTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGD-LPNAVLLFEAAVQQDPKHMEAWQYLGTTQAE-NEQELLAISAL 121 (368)
T ss_dssp --CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTC-HHHHHHHHHHHHHSCTTCHHHHHHHHHHHHH-TTCHHHHHHHH
T ss_pred HHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-CcCHHHHHHHH
Confidence 466 7888888888764 568999999999997 9999999999999999999999999999999 99999999999
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHH----------------HHHHHHHHcCCHHHH
Q 045024 82 QRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFR----------------RLGYLQLHHKKWSEA 145 (1173)
Q Consensus 82 ~~al~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~----------------~la~~~~~~g~~~~A 145 (1173)
+++++.+|++..++..+|.++...|++++|+..+++++...|++...+. .++.++ ..|++++|
T Consensus 122 ~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A 200 (368)
T 1fch_A 122 RRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL-SDSLFLEV 200 (368)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHH-HHHHHHHH
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh-hcccHHHH
Confidence 9999999999999999999999999999999999999999998766654 466666 99999999
Q ss_pred HHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhh
Q 045024 146 VQSLQHAIRGYPT--SPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKI 223 (1173)
Q Consensus 146 ~~~l~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~ 223 (1173)
+..|+++++.+|. ++.++..+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++.
T Consensus 201 ~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 280 (368)
T 1fch_A 201 KELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALEL 280 (368)
T ss_dssp HHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 9999999999999 89999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHhhhcCChHHHHHHhchHHHHHhhccchhhhhhchh
Q 045024 224 SSENVSAHYGLASGLLGLAKQCINLGAFRWGASLLEDACKVAEANTRLAGNMSCIWKLHGDIQLTYAKCFPWAEERQSLE 303 (1173)
Q Consensus 224 ~p~~~~a~~~la~~~~~l~~~~~a~g~~~~A~~~l~~Al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~ 303 (1173)
+|+++.++..+|.++...|+ +++|...++++++..+.....
T Consensus 281 ~~~~~~~~~~l~~~~~~~g~-------~~~A~~~~~~al~~~~~~~~~-------------------------------- 321 (368)
T 1fch_A 281 QPGYIRSRYNLGISCINLGA-------HREAVEHFLEALNMQRKSRGP-------------------------------- 321 (368)
T ss_dssp CTTCHHHHHHHHHHHHHHTC-------HHHHHHHHHHHHHHHHTC-----------------------------------
T ss_pred CCCcHHHHHHHHHHHHHCCC-------HHHHHHHHHHHHHhCCCCCCc--------------------------------
Confidence 99999888888888777655 555555555555443321000
Q ss_pred hhhhhhhhhhHhhHhhhhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHhhhhhhhh
Q 045024 304 FDVETFSASIVSWKTTCLMAAISSKSSYQRALYLAPWQANIYTDIAITSDLIYSLNEAYGHYQSA 368 (1173)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~ 368 (1173)
.-...|....+|..++.++...|++++|.....+.
T Consensus 322 ------------------------------~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 356 (368)
T 1fch_A 322 ------------------------------RGEGGAMSENIWSTLRLALSMLGQSDAYGAADARD 356 (368)
T ss_dssp ---------------------------------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTC
T ss_pred ------------------------------cccccchhhHHHHHHHHHHHHhCChHhHHHhHHHH
Confidence 00123445889999999999999999996654443
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.3e-24 Score=252.29 Aligned_cols=249 Identities=17% Similarity=0.212 Sum_probs=216.0
Q ss_pred HHHHHHHHhCCCCH----HHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 045024 9 LQLEDSLEANPDDP----SLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRA 84 (1173)
Q Consensus 9 ~~l~~al~~~P~~~----~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~a 84 (1173)
..+.+.+...|+++ ..++.+|..++..|+ +++|+..|+++++.+|+++.++..+|.++.. .|++++|+..|+++
T Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-~g~~~~A~~~~~~a 125 (365)
T 4eqf_A 48 SASEKGYYFHTENPFKDWPGAFEEGLKRLKEGD-LPVTILFMEAAILQDPGDAEAWQFLGITQAE-NENEQAAIVALQRC 125 (365)
T ss_dssp -----CCCCCSSCTTTTCTTHHHHHHHHHHHTC-HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHH
T ss_pred HHHHHhhhcccCCcccchhHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH-CCCHHHHHHHHHHH
Confidence 34444444555544 459999999999998 9999999999999999999999999999999 99999999999999
Q ss_pred HhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHH----------HHHHHHcCCHHHHHHHHHHHHH
Q 045024 85 VSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRL----------GYLQLHHKKWSEAVQSLQHAIR 154 (1173)
Q Consensus 85 l~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l----------a~~~~~~g~~~~A~~~l~~al~ 154 (1173)
++.+|++..++..+|.++...|++++|+..++++++..|++...+..+ |.++...|++++|+..|+++++
T Consensus 126 l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 205 (365)
T 4eqf_A 126 LELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAH 205 (365)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHH
T ss_pred HhcCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999876665544 9999999999999999999999
Q ss_pred hCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCHHHHH
Q 045024 155 GYPT--SPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHY 232 (1173)
Q Consensus 155 ~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~ 232 (1173)
.+|+ ++.++..+|.++...|++++|+..|+++++..|+++.++..+|.++...|++++|+..|+++++.+|+++.++.
T Consensus 206 ~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 285 (365)
T 4eqf_A 206 QNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRY 285 (365)
T ss_dssp HSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred hCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHH
Confidence 9999 89999999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred HHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHH
Q 045024 233 GLASGLLGLAKQCINLGAFRWGASLLEDACKVAE 266 (1173)
Q Consensus 233 ~la~~~~~l~~~~~a~g~~~~A~~~l~~Al~~~~ 266 (1173)
.+|.++...|+ +++|...++++++..+
T Consensus 286 ~l~~~~~~~g~-------~~~A~~~~~~al~~~~ 312 (365)
T 4eqf_A 286 NLGISCINLGA-------YREAVSNFLTALSLQR 312 (365)
T ss_dssp HHHHHHHHHTC-------CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCC-------HHHHHHHHHHHHHhCc
Confidence 88887777655 6667766666666544
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.92 E-value=1.3e-23 Score=244.14 Aligned_cols=266 Identities=12% Similarity=0.069 Sum_probs=239.8
Q ss_pred HHhCCCCHHHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCC-HHHHHHHHHHHHhhCCCCHH
Q 045024 15 LEANPDDPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSID-TQRAIKCYQRAVSLSPDDSV 93 (1173)
Q Consensus 15 l~~~P~~~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~-~~eA~~~~~~al~~~p~~~~ 93 (1173)
+..+|+++.++..+|.++...++ +++|+..|+++++++|++..+|+.+|.++.. .|+ +++|+..|+++++++|++..
T Consensus 90 i~~~p~~~~a~~~lg~~~~~~g~-~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~-~g~d~~eAl~~~~~al~l~P~~~~ 167 (382)
T 2h6f_A 90 IIYSDKFRDVYDYFRAVLQRDER-SERAFKLTRDAIELNAANYTVWHFRRVLLKS-LQKDLHEEMNYITAIIEEQPKNYQ 167 (382)
T ss_dssp ECCCHHHHHHHHHHHHHHHHTCC-CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCCHHHHHHHHHHHHHHCTTCHH
T ss_pred hhCChhhHHHHHHHHHHHHHCCC-hHHHHHHHHHHHHhCccCHHHHHHHHHHHHH-cccCHHHHHHHHHHHHHHCCCCHH
Confidence 45678889999999999998887 9999999999999999999999999999999 996 99999999999999999999
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-
Q 045024 94 SGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHR- 172 (1173)
Q Consensus 94 a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~- 172 (1173)
+|+.+|.++...|++++|+..|+++++++|++..+|..+|.++...|++++|+..|+++++++|++..+|+.+|.++..
T Consensus 168 a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l 247 (382)
T 2h6f_A 168 VWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNT 247 (382)
T ss_dssp HHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHH-----HHHHHHHHHhCCCChHHHHHHHHHHHHcC--ChHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHH
Q 045024 173 LGMFSAA-----IKSYGRAIELDDTSIFPLLESGNIFLMLG--NFRKGVEQFQLALKISSENVSAHYGLASGLLGLAKQC 245 (1173)
Q Consensus 173 ~g~~~~A-----~~~~~~al~~~p~~~~a~~~la~~~~~~g--~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~l~~~~ 245 (1173)
.|.+++| +..|+++++++|++..+|+.++.++...| ++++|++.++++ +.+|+++.++..++.++..+++..
T Consensus 248 ~~~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~ 326 (382)
T 2h6f_A 248 TGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQ 326 (382)
T ss_dssp TCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTT
T ss_pred cCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhccc
Confidence 5665788 59999999999999999999999999988 699999999998 999999999999999998876310
Q ss_pred HHhhcHHHHHHHHHHHHHHHHHH-hhhcCChHHHHHHhchHHHH
Q 045024 246 INLGAFRWGASLLEDACKVAEAN-TRLAGNMSCIWKLHGDIQLT 288 (1173)
Q Consensus 246 ~a~g~~~~A~~~l~~Al~~~~~~-~~~~~~~~~~~~~~g~~~~~ 288 (1173)
. ..+...+++|++.+... ....|.....|..++.....
T Consensus 327 ~-----~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~ 365 (382)
T 2h6f_A 327 C-----DNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQS 365 (382)
T ss_dssp C-----SSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHH
T ss_pred c-----cchHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHH
Confidence 0 00111246677777777 77888888888888776654
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.9e-23 Score=242.56 Aligned_cols=221 Identities=20% Similarity=0.228 Sum_probs=205.7
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 045024 5 GALLLQLEDSLEANPDDPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRA 84 (1173)
Q Consensus 5 ~aAi~~l~~al~~~P~~~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~a 84 (1173)
.+|+..|+++++.+|+++.+++.+|.++...|+ +++|+..|+++++.+|+++.++..+|.++.. .|++++|+..|+++
T Consensus 82 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-~g~~~~A~~~~~~a 159 (365)
T 4eqf_A 82 PVTILFMEAAILQDPGDAEAWQFLGITQAENEN-EQAAIVALQRCLELQPNNLKALMALAVSYTN-TSHQQDACEALKNW 159 (365)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHc-cccHHHHHHHHHHH
Confidence 446999999999999999999999999999998 9999999999999999999999999999999 99999999999999
Q ss_pred HhhCCCCHHHHHHH----------HHHHHHCCCHHHHHHHHHHHHhhCCC--cHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 045024 85 VSLSPDDSVSGEAL----------CELLEHGGKESLEVVVCREASDKSPR--AFWAFRRLGYLQLHHKKWSEAVQSLQHA 152 (1173)
Q Consensus 85 l~~~p~~~~a~~~L----------a~~~~~~g~~~~A~~~~~~al~~~p~--~~~a~~~la~~~~~~g~~~~A~~~l~~a 152 (1173)
++.+|++..++..+ |.++...|++++|+..++++++..|+ ++.++..+|.++...|++++|+..|+++
T Consensus 160 l~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 239 (365)
T 4eqf_A 160 IKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAA 239 (365)
T ss_dssp HHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 99999876665544 99999999999999999999999999 8999999999999999999999999999
Q ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCC
Q 045024 153 IRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSEN 227 (1173)
Q Consensus 153 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 227 (1173)
++.+|+++.++..+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++..|+.
T Consensus 240 l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 314 (365)
T 4eqf_A 240 LTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKS 314 (365)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC
T ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998874
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.91 E-value=1.7e-22 Score=229.37 Aligned_cols=221 Identities=18% Similarity=0.178 Sum_probs=204.4
Q ss_pred CHHHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 045024 21 DPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCE 100 (1173)
Q Consensus 21 ~~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~ 100 (1173)
++..++.+|..++..|+ +++|+..|+++++.+|+++.++..+|.++.. .|++++|+..|+++++.+|++..++..+|.
T Consensus 20 ~~~~~~~~a~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~a~~~~~~~~~~~~~la~ 97 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLAN-LAEAALAFEAVCQAAPEREEAWRSLGLTQAE-NEKDGLAIIALNHARMLDPKDIAVHAALAV 97 (327)
T ss_dssp GSSCHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhcc-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhcCcCCHHHHHHHHH
Confidence 34567899999999987 9999999999999999999999999999999 999999999999999999999999999999
Q ss_pred HHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHH--------------HH-HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 045024 101 LLEHGGKESLEVVVCREASDKSPRAFWAFRRL--------------GY-LQLHHKKWSEAVQSLQHAIRGYPTSPHLWEA 165 (1173)
Q Consensus 101 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l--------------a~-~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~ 165 (1173)
++...|++++|+..++++++..|.+...+..+ +. ++...|++++|+..++++++.+|.++.++..
T Consensus 98 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 177 (327)
T 3cv0_A 98 SHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHAS 177 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHH
Confidence 99999999999999999999999987777666 66 6888999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHH
Q 045024 166 LGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLASGLLGLAK 243 (1173)
Q Consensus 166 la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~l~~ 243 (1173)
+|.++...|++++|+..++++++.+|++..++..+|.++...|++++|+..|+++++..|++..++..++.++...|+
T Consensus 178 la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~ 255 (327)
T 3cv0_A 178 LGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQ 255 (327)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999999999999999999999999999999888888777776554
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.91 E-value=5.8e-23 Score=220.23 Aligned_cols=200 Identities=20% Similarity=0.187 Sum_probs=178.9
Q ss_pred CCCHHHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 045024 19 PDDPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEAL 98 (1173)
Q Consensus 19 P~~~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~L 98 (1173)
|+++.+++.+|.++...|+ +++|+..|+++++.+|+++.+++.+|.++.. .|++++|+..|+++++++|+++.++..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~-~g~~~~A~~~~~~al~~~P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGR-YDAALTLFERALKENPQDPEALYWLARTQLK-LGLVNPALENGKTLVARTPRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTC-HHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence 7788999999999999998 9999999999999999999999999999999 9999999999999999999999999999
Q ss_pred HHHHHHC-----------CCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 045024 99 CELLEHG-----------GKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALG 167 (1173)
Q Consensus 99 a~~~~~~-----------g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la 167 (1173)
|.++... |++++|+..++++++.+|+++.++..+|.++...|++++|+..|+++++++ +++.++..+|
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~la 158 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRSALA 158 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHHHH
Confidence 9999999 999999999999999999999999999999999999999999999999999 9999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 045024 168 LAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLAL 221 (1173)
Q Consensus 168 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al 221 (1173)
.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++-
T Consensus 159 ~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 159 ELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999998864
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.91 E-value=1.2e-22 Score=230.64 Aligned_cols=257 Identities=15% Similarity=0.139 Sum_probs=232.7
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 045024 5 GALLLQLEDSLEANPDDPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRA 84 (1173)
Q Consensus 5 ~aAi~~l~~al~~~P~~~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~a 84 (1173)
..|+..|+++++.+|+++.+++.+|.++...|+ +++|+..|+++++.+|+++.++..+|.++.. .|++++|+..|+++
T Consensus 38 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~-~~~~~~A~~~~~~~ 115 (327)
T 3cv0_A 38 AEAALAFEAVCQAAPEREEAWRSLGLTQAENEK-DGLAIIALNHARMLDPKDIAVHAALAVSHTN-EHNANAALASLRAW 115 (327)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhcCcCCHHHHHHHHHHHHH-cCCHHHHHHHHHHH
Confidence 446999999999999999999999999999998 9999999999999999999999999999999 99999999999999
Q ss_pred HhhCCCCHHHHHHH--------------HH-HHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 045024 85 VSLSPDDSVSGEAL--------------CE-LLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSL 149 (1173)
Q Consensus 85 l~~~p~~~~a~~~L--------------a~-~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l 149 (1173)
++.+|.+...+..+ +. ++...|++++|+..++++++..|.++.++..+|.++...|++++|+..+
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 195 (327)
T 3cv0_A 116 LLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANL 195 (327)
T ss_dssp HHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHH
Confidence 99999998877776 66 6888899999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCC---
Q 045024 150 QHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSE--- 226 (1173)
Q Consensus 150 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~--- 226 (1173)
+++++.+|+++.++..+|.++...|++++|+..|+++++..|++..++..+|.++...|++++|+..|+++++..|+
T Consensus 196 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 275 (327)
T 3cv0_A 196 RRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTT 275 (327)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ---------CHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHhh
Q 045024 227 ---------NVSAHYGLASGLLGLAKQCINLGAFRWGASLLEDACKVAEANTR 270 (1173)
Q Consensus 227 ---------~~~a~~~la~~~~~l~~~~~a~g~~~~A~~~l~~Al~~~~~~~~ 270 (1173)
+..++..++.++.. .|++++|...++++++.++....
T Consensus 276 ~~~~~~~~~~~~~~~~l~~~~~~-------~g~~~~A~~~~~~~l~~~~~~~~ 321 (327)
T 3cv0_A 276 PTGEASREATRSMWDFFRMLLNV-------MNRPDLVELTYAQNVEPFAKEFG 321 (327)
T ss_dssp -----CCTHHHHHHHHHHHHHHH-------TTCHHHHHHHTTCCSHHHHHHTT
T ss_pred ccccchhhcCHHHHHHHHHHHHh-------cCCHHHHHHHHHHHHHhcchhhh
Confidence 55566666665555 55588888888777777766544
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.90 E-value=7.4e-23 Score=237.90 Aligned_cols=268 Identities=10% Similarity=0.014 Sum_probs=233.8
Q ss_pred HHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHhhCCCcHHH
Q 045024 50 AKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGK-ESLEVVVCREASDKSPRAFWA 128 (1173)
Q Consensus 50 l~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~~g~-~~~A~~~~~~al~~~p~~~~a 128 (1173)
+..+|+++.++..+|.++.. .|++++|+..|+++++++|++..+|..+|.++...|+ +++|+..|+++++++|+++.+
T Consensus 90 i~~~p~~~~a~~~lg~~~~~-~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a 168 (382)
T 2h6f_A 90 IIYSDKFRDVYDYFRAVLQR-DERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQV 168 (382)
T ss_dssp ECCCHHHHHHHHHHHHHHHH-TCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHH
T ss_pred hhCChhhHHHHHHHHHHHHH-CCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHH
Confidence 45677788999999999999 9999999999999999999999999999999999997 999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH-c
Q 045024 129 FRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLM-L 207 (1173)
Q Consensus 129 ~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~-~ 207 (1173)
|+.+|.++..+|++++|+..|+++++++|++..+|..+|.++...|++++|+..|+++++++|++..+|+.+|.++.. .
T Consensus 169 ~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~ 248 (382)
T 2h6f_A 169 WHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTT 248 (382)
T ss_dssp HHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999999 5
Q ss_pred CChHHH-----HHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHhhhcCChHHHHHHh
Q 045024 208 GNFRKG-----VEQFQLALKISSENVSAHYGLASGLLGLAKQCINLGAFRWGASLLEDACKVAEANTRLAGNMSCIWKLH 282 (1173)
Q Consensus 208 g~~~~A-----~~~~~~al~~~p~~~~a~~~la~~~~~l~~~~~a~g~~~~A~~~l~~Al~~~~~~~~~~~~~~~~~~~~ 282 (1173)
|.+++| +..|+++++++|++..+++.++.++...|. +++++ +++.+... ...+....++..+
T Consensus 249 ~~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~-----~~~~~-------a~~~~~~~-~~~p~~~~al~~L 315 (382)
T 2h6f_A 249 GYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGL-----SKYPN-------LLNQLLDL-QPSHSSPYLIAFL 315 (382)
T ss_dssp CSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCG-----GGCHH-------HHHHHHHH-TTTCCCHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCc-----cchHH-------HHHHHHHh-ccCCCCHHHHHHH
Confidence 655888 599999999999999999999998887552 23444 44444444 5677777888888
Q ss_pred chHHHHHhhccchhhhhhchhhhhhhhhhhhHhhHhhhhH-HHHHHHHHHHHH-HhcCCCCHHHHHHHHHHHHHH
Q 045024 283 GDIQLTYAKCFPWAEERQSLEFDVETFSASIVSWKTTCLM-AAISSKSSYQRA-LYLAPWQANIYTDIAITSDLI 355 (1173)
Q Consensus 283 g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~A~~~~~~a-l~l~p~~~~~~~~la~~~~~~ 355 (1173)
++++...++... ...+ ..++|+..|+++ ++++|.....|..++..+...
T Consensus 316 a~~~~~~~~~~~------------------------~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 316 VDIYEDMLENQC------------------------DNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQSK 366 (382)
T ss_dssp HHHHHHHHHTTC------------------------SSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcccc------------------------cchHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence 888866542000 0001 136899999999 999999999999999887644
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.89 E-value=6.5e-22 Score=212.05 Aligned_cols=188 Identities=20% Similarity=0.168 Sum_probs=180.4
Q ss_pred CCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHH
Q 045024 54 PQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLG 133 (1173)
Q Consensus 54 p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la 133 (1173)
|.++.+++.+|.++.. .|++++|+..|+++++.+|+++.++..+|.++...|++++|+..++++++.+|+++.++..+|
T Consensus 2 p~~~~~~~~lg~~~~~-~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg 80 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYA-LGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLS 80 (217)
T ss_dssp --CCHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence 7788999999999999 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHc-----------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHH
Q 045024 134 YLQLHH-----------KKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGN 202 (1173)
Q Consensus 134 ~~~~~~-----------g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~ 202 (1173)
.++... |++++|+..|+++++++|+++.++..+|.++...|++++|+..|+++++++ +++.++..+|.
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~la~ 159 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRSALAE 159 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHHHHH
Confidence 999999 999999999999999999999999999999999999999999999999999 99999999999
Q ss_pred HHHHcCChHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHH
Q 045024 203 IFLMLGNFRKGVEQFQLALKISSENVSAHYGLASGLLGLAK 243 (1173)
Q Consensus 203 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~l~~ 243 (1173)
++...|++++|+..|+++++.+|+++.++..++.++...|+
T Consensus 160 ~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~ 200 (217)
T 2pl2_A 160 LYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGK 200 (217)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccC
Confidence 99999999999999999999999999999999999888877
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.7e-21 Score=215.43 Aligned_cols=229 Identities=15% Similarity=0.123 Sum_probs=196.0
Q ss_pred CHHHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCC----HHHHH
Q 045024 21 DPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDD----SVSGE 96 (1173)
Q Consensus 21 ~~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~----~~a~~ 96 (1173)
+++.++.+|.+++..|+ +++|+..|+++++.+|+++.++..+|.++.. .|++++|+..|+++++ .|.+ ..++.
T Consensus 2 n~~~~~~~a~~~~~~~~-~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~-~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~ 78 (272)
T 3u4t_A 2 NDDVEFRYADFLFKNNN-YAEAIEVFNKLEAKKYNSPYIYNRRAVCYYE-LAKYDLAQKDIETYFS-KVNATKAKSADFE 78 (272)
T ss_dssp ---CHHHHHHHHHTTTC-HHHHHHHHHHHHHTTCCCSTTHHHHHHHHHH-TTCHHHHHHHHHHHHT-TSCTTTCCHHHHH
T ss_pred cHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-HhhHHHHHHHHHHHHh-ccCchhHHHHHHH
Confidence 35678899999999987 9999999999999999999999999999999 9999999999999999 4444 34589
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Q 045024 97 ALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMF 176 (1173)
Q Consensus 97 ~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~ 176 (1173)
.+|.++...|++++|+..++++++.+|+++.++..+|.++...|++++|+..|+++++.+|.++.++..+|......+++
T Consensus 79 ~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~ 158 (272)
T 3u4t_A 79 YYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEY 158 (272)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999555556799
Q ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCC---hHHHHHHHHHHHhhcCCCHHH-HHHHHHHHHHHHHHHHHhhcHH
Q 045024 177 SAAIKSYGRAIELDDTSIFPLLESGNIFLMLGN---FRKGVEQFQLALKISSENVSA-HYGLASGLLGLAKQCINLGAFR 252 (1173)
Q Consensus 177 ~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~---~~~A~~~~~~al~~~p~~~~a-~~~la~~~~~l~~~~~a~g~~~ 252 (1173)
++|+..|+++++.+|++..++..+|.++...|+ +++|+..|+++++.....+.. ...+..++..+|..+...|+++
T Consensus 159 ~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 238 (272)
T 3u4t_A 159 VKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKV 238 (272)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHH
Confidence 999999999999999999999999999999999 999999999999876322211 2223344444444444444443
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.88 E-value=6.7e-21 Score=208.19 Aligned_cols=231 Identities=12% Similarity=0.083 Sum_probs=212.9
Q ss_pred CCHHHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCC-------H
Q 045024 20 DDPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDD-------S 92 (1173)
Q Consensus 20 ~~~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~-------~ 92 (1173)
+.+..++.+|.+++..|+ +++|+..|+++++.+ .++.++..+|.++.. .|++++|+..|+++++.+|++ .
T Consensus 3 ~~a~~~~~~g~~~~~~~~-~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~-~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 79 (258)
T 3uq3_A 3 SMADKEKAEGNKFYKARQ-FDEAIEHYNKAWELH-KDITYLNNRAAAEYE-KGEYETAISTLNDAVEQGREMRADYKVIS 79 (258)
T ss_dssp HHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHS-CCTHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred hHHHHHHHHHHHHHHhcc-HHHHHHHHHHHHHhh-ccHHHHHHHHHHHHH-cccHHHHHHHHHHHHHhCcccccchHHHH
Confidence 356789999999999998 999999999999999 899999999999999 999999999999999998877 6
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 045024 93 VSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHR 172 (1173)
Q Consensus 93 ~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~ 172 (1173)
.++..+|.++...|++++|+..++++++..|. +.++...|++++|+..+++++..+|.++.++..+|.++..
T Consensus 80 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~--------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (258)
T 3uq3_A 80 KSFARIGNAYHKLGDLKKTIEYYQKSLTEHRT--------ADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFT 151 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC--------HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhcCch--------hHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHH
Confidence 88999999999999999999999999999987 4567788999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhhcHH
Q 045024 173 LGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLASGLLGLAKQCINLGAFR 252 (1173)
Q Consensus 173 ~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~l~~~~~a~g~~~ 252 (1173)
.|++++|+..|+++++.+|.++.++..+|.++...|++++|+..|+++++.+|+++.++..+|.++...| +++
T Consensus 152 ~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g-------~~~ 224 (258)
T 3uq3_A 152 KSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVK-------EYA 224 (258)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT-------CHH
T ss_pred hcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHh-------hHH
Confidence 9999999999999999999999999999999999999999999999999999999988888777777655 478
Q ss_pred HHHHHHHHHHHHHHHH
Q 045024 253 WGASLLEDACKVAEAN 268 (1173)
Q Consensus 253 ~A~~~l~~Al~~~~~~ 268 (1173)
+|...++++++..+..
T Consensus 225 ~A~~~~~~a~~~~~~~ 240 (258)
T 3uq3_A 225 SALETLDAARTKDAEV 240 (258)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhChhh
Confidence 8888888888776543
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.9e-20 Score=210.13 Aligned_cols=277 Identities=14% Similarity=0.046 Sum_probs=224.0
Q ss_pred HHHHccCCHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHH
Q 045024 66 YYTRFSIDTQRAIKCYQRAVSLSPDD-SVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSE 144 (1173)
Q Consensus 66 ~~~~~~g~~~eA~~~~~~al~~~p~~-~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~ 144 (1173)
-.+. .|+|..|+..+++....+|++ .++...++++|...|++++|+..++. .+|.+..++..++..+...|++++
T Consensus 8 ~~~~-~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~~~~~~~a~~~la~~~~~~~~~~~ 83 (291)
T 3mkr_A 8 NAFY-IGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP---SSAPELQAVRMFAEYLASHSRRDA 83 (291)
T ss_dssp HHHH-TTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---TSCHHHHHHHHHHHHHHCSTTHHH
T ss_pred HHHH-HHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---cCChhHHHHHHHHHHHcCCCcHHH
Confidence 3445 799999999988887777776 35678888999999999999987765 255577788889999999999999
Q ss_pred HHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 045024 145 AVQSLQHAIRG--YPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALK 222 (1173)
Q Consensus 145 A~~~l~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~ 222 (1173)
|++.+++++.. +|+++.+++.+|.++...|++++|++.+++ |+++.++..+|.++..+|++++|+..|+++++
T Consensus 84 A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~ 158 (291)
T 3mkr_A 84 IVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-----GDSLECMAMTVQILLKLDRLDLARKELKKMQD 158 (291)
T ss_dssp HHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-----CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 99999998875 599999999999999999999999999988 88899999999999999999999999999999
Q ss_pred hcCCCHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHhhhcCChHHHHHHhchHHHHHhhccchhhhhhch
Q 045024 223 ISSENVSAHYGLASGLLGLAKQCINLGAFRWGASLLEDACKVAEANTRLAGNMSCIWKLHGDIQLTYAKCFPWAEERQSL 302 (1173)
Q Consensus 223 ~~p~~~~a~~~la~~~~~l~~~~~a~g~~~~A~~~l~~Al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l 302 (1173)
.+|++.... ++..+.....
T Consensus 159 ~~p~~~~~~--l~~a~~~l~~----------------------------------------------------------- 177 (291)
T 3mkr_A 159 QDEDATLTQ--LATAWVSLAA----------------------------------------------------------- 177 (291)
T ss_dssp HCTTCHHHH--HHHHHHHHHH-----------------------------------------------------------
T ss_pred hCcCcHHHH--HHHHHHHHHh-----------------------------------------------------------
Confidence 998875332 2222221100
Q ss_pred hhhhhhhhhhhHhhHhhhhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHhhhhhhhhhHHHHHHHHHHHhh
Q 045024 303 EFDVETFSASIVSWKTTCLMAAISSKSSYQRALYLAPWQANIYTDIAITSDLIYSLNEAYGHYQSAWHVSEKMALGALLL 382 (1173)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~A~k~~~~al~~ 382 (1173)
..+++++|+..|+++++..|+++.+++.+|.++...|++++|
T Consensus 178 -----------------~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA--------------------- 219 (291)
T 3mkr_A 178 -----------------GGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAA--------------------- 219 (291)
T ss_dssp -----------------CTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHH---------------------
T ss_pred -----------------CchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHH---------------------
Confidence 012245788888999999999999999999999999999887
Q ss_pred cCCCHHHHHHHHHhhcccHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHH-HHHHHHHHHhhCCCChhHHHHhHHH
Q 045024 383 EGDNCQFWVTLGCLSNYNGLKQHALIRGLQLDVSLADAWAHIGKLYGEVGEKKL-ARQAFDSARSIDPSLALPWAGMSAD 461 (1173)
Q Consensus 383 ~p~~~~~~~~Lg~~~~~~~~a~~a~~kal~l~p~~~~a~~~Lg~~y~~~g~~e~-A~~~f~~al~~~P~~~~a~~~l~a~ 461 (1173)
...|++++..+|++++++.++|.++...|++++ +..+++++++++|+++.+. .
T Consensus 220 ---------------------~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~-----d 273 (291)
T 3mkr_A 220 ---------------------EGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIK-----E 273 (291)
T ss_dssp ---------------------HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHH-----H
T ss_pred ---------------------HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHH-----H
Confidence 447788888899999999999999999999976 5688999999999996543 2
Q ss_pred HHHhcCCHHHHHHHH
Q 045024 462 VQASESLVDDAFESC 476 (1173)
Q Consensus 462 ~~~~~g~~~eA~~~~ 476 (1173)
...+.+.++++..-|
T Consensus 274 ~~~~~~~fd~~~~~~ 288 (291)
T 3mkr_A 274 YRAKENDFDRLVLQY 288 (291)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHc
Confidence 444566667666554
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.87 E-value=5.3e-21 Score=211.52 Aligned_cols=234 Identities=15% Similarity=0.068 Sum_probs=211.9
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHccCCHHHHHH
Q 045024 4 KGALLLQLEDSLEANPDDPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQN----AVAFRYLGHYYTRFSIDTQRAIK 79 (1173)
Q Consensus 4 ~~aAi~~l~~al~~~P~~~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~----~~a~~~lg~~~~~~~g~~~eA~~ 79 (1173)
...|+..|+++++.+|+++.+++.+|.++...|+ +++|+..|+++++ .|.+ +.++..+|.++.. .|++++|+.
T Consensus 19 ~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~-~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~~~~~-~~~~~~A~~ 95 (272)
T 3u4t_A 19 YAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAK-YDLAQKDIETYFS-KVNATKAKSADFEYYGKILMK-KGQDSLAIQ 95 (272)
T ss_dssp HHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTC-HHHHHHHHHHHHT-TSCTTTCCHHHHHHHHHHHHH-TTCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhh-HHHHHHHHHHHHh-ccCchhHHHHHHHHHHHHHHH-cccHHHHHH
Confidence 3456999999999999999999999999999998 9999999999998 4443 4569999999999 999999999
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 045024 80 CYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTS 159 (1173)
Q Consensus 80 ~~~~al~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~ 159 (1173)
.|+++++.+|++..++..+|.++...|++++|+..++++++.+|.++.++..+|...+..+++++|+..|+++++.+|++
T Consensus 96 ~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~ 175 (272)
T 3u4t_A 96 QYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNI 175 (272)
T ss_dssp HHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccc
Confidence 99999999999999999999999999999999999999999999999999999955556679999999999999999999
Q ss_pred HHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhC---CCC-----hHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCH
Q 045024 160 PHLWEALGLAYHRLGM---FSAAIKSYGRAIELD---DTS-----IFPLLESGNIFLMLGNFRKGVEQFQLALKISSENV 228 (1173)
Q Consensus 160 ~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~---p~~-----~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 228 (1173)
+.++..+|.++...|+ +++|+..|+++++.. |+. ..++..+|.+|...|++++|+..|+++++.+|+++
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~ 255 (272)
T 3u4t_A 176 YIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNK 255 (272)
T ss_dssp HHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred hHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHH
Confidence 9999999999999999 999999999999886 442 36888999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH
Q 045024 229 SAHYGLASGLLG 240 (1173)
Q Consensus 229 ~a~~~la~~~~~ 240 (1173)
.++-.++.+...
T Consensus 256 ~a~~~l~~~~~~ 267 (272)
T 3u4t_A 256 KAIDGLKMKLEH 267 (272)
T ss_dssp HHHHHHC-----
T ss_pred HHHHHhhhhhcc
Confidence 988776665543
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.87 E-value=1.1e-20 Score=204.72 Aligned_cols=218 Identities=17% Similarity=0.108 Sum_probs=190.3
Q ss_pred CHHHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 045024 21 DPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCE 100 (1173)
Q Consensus 21 ~~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~ 100 (1173)
.+..++.+|..+...|+ +++|+..|+++++.+|+++.++..+|.++.. .|++++|+..|+++++.+|.+..++..+|.
T Consensus 22 ~~~~~~~~a~~~~~~~~-~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~la~ 99 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGD-YEKAAEAFTKAIEENKEDAIPYINFANLLSS-VNELERALAFYDKALELDSSAATAYYGAGN 99 (243)
T ss_dssp ---------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhC-HHHHHHHHHHHHHhCcccHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHcCCcchHHHHHHHH
Confidence 46788999999999987 9999999999999999999999999999999 999999999999999999999999999999
Q ss_pred HHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 045024 101 LLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAI 180 (1173)
Q Consensus 101 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 180 (1173)
++...|++++|+..++++++..|.++.++..+|.++...|++++|+..++++++.+|+++.++..+|.++...|++++|+
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 179 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEAL 179 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCHHHHHHHHHHHHH
Q 045024 181 KSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLASGLLG 240 (1173)
Q Consensus 181 ~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~ 240 (1173)
..++++++..|++..++..+|.++...|++++|+..|+++++.+|+++.++..++.+...
T Consensus 180 ~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~ 239 (243)
T 2q7f_A 180 SQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLLGHH 239 (243)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC----
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999999888776665443
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.87 E-value=2.1e-20 Score=204.31 Aligned_cols=222 Identities=16% Similarity=0.195 Sum_probs=209.2
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHccCCHHH
Q 045024 4 KGALLLQLEDSLEANPDDPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQN-------AVAFRYLGHYYTRFSIDTQR 76 (1173)
Q Consensus 4 ~~aAi~~l~~al~~~P~~~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~-------~~a~~~lg~~~~~~~g~~~e 76 (1173)
...|+..|+++++.+ +++.+++.+|.++...|+ +++|+..|+++++.+|++ +.++..+|.++.. .|++++
T Consensus 21 ~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~-~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~ 97 (258)
T 3uq3_A 21 FDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGE-YETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHK-LGDLKK 97 (258)
T ss_dssp HHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH-TTCHHH
T ss_pred HHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHccc-HHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHH-cccHHH
Confidence 345699999999999 999999999999999998 999999999999998877 7999999999999 999999
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 045024 77 AIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGY 156 (1173)
Q Consensus 77 A~~~~~~al~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~ 156 (1173)
|+..|+++++.+|. +.++...|++++|+..+++++..+|.++.++..+|.++...|++++|+..|++++..+
T Consensus 98 A~~~~~~a~~~~~~--------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~ 169 (258)
T 3uq3_A 98 TIEYYQKSLTEHRT--------ADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA 169 (258)
T ss_dssp HHHHHHHHHHHCCC--------HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhcCch--------hHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 99999999999987 4567788899999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhc------CCCHHH
Q 045024 157 PTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKIS------SENVSA 230 (1173)
Q Consensus 157 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~------p~~~~a 230 (1173)
|.++.++..+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++.+ |++..+
T Consensus 170 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~ 249 (258)
T 3uq3_A 170 PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREI 249 (258)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHH
T ss_pred cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999 887776
Q ss_pred HHHHHH
Q 045024 231 HYGLAS 236 (1173)
Q Consensus 231 ~~~la~ 236 (1173)
+..++.
T Consensus 250 ~~~l~~ 255 (258)
T 3uq3_A 250 DQLYYK 255 (258)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 655544
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.4e-19 Score=193.12 Aligned_cols=216 Identities=15% Similarity=0.125 Sum_probs=205.9
Q ss_pred HhCCCCHHHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHH
Q 045024 16 EANPDDPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSG 95 (1173)
Q Consensus 16 ~~~P~~~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~ 95 (1173)
+.+|+++.+++.+|.++...|+ +++|+..|+++++.+|+++.++..+|.++.. .|++++|+..|+++++.+|++..++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~a~~~~~~~~~~~ 79 (225)
T 2vq2_A 2 EKANQVSNIKTQLAMEYMRGQD-YRQATASIEDALKSDPKNELAWLVRAEIYQY-LKVNDKAQESFRQALSIKPDSAEIN 79 (225)
T ss_dssp --CCHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CCCcccHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHhCccchHHHHHHHHHHHH-cCChHHHHHHHHHHHHhCCCChHHH
Confidence 3578889999999999999998 9999999999999999999999999999999 9999999999999999999999999
Q ss_pred HHHHHHHHHC-CCHHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 045024 96 EALCELLEHG-GKESLEVVVCREASD--KSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHR 172 (1173)
Q Consensus 96 ~~La~~~~~~-g~~~~A~~~~~~al~--~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~ 172 (1173)
..+|.++... |++++|+..++++++ ..|.+..++..+|.++...|++++|+..++++++.+|.++.++..+|.++..
T Consensus 80 ~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~ 159 (225)
T 2vq2_A 80 NNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKML 159 (225)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHH
Confidence 9999999999 999999999999999 6777889999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCHHHHHH
Q 045024 173 LGMFSAAIKSYGRAIELDD-TSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYG 233 (1173)
Q Consensus 173 ~g~~~~A~~~~~~al~~~p-~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~ 233 (1173)
.|++++|+..++++++..| .+...+..++.++...|++++|..+++.+.+.+|+++.+...
T Consensus 160 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 221 (225)
T 2vq2_A 160 AGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQTV 221 (225)
T ss_dssp HTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 9999999999999999999 999999999999999999999999999999999999876543
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.86 E-value=5.4e-20 Score=206.50 Aligned_cols=201 Identities=10% Similarity=0.026 Sum_probs=127.0
Q ss_pred HHccCcHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHH
Q 045024 33 WENSESKEKAAEHFVIAAKLNPQN-AVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLE 111 (1173)
Q Consensus 33 ~~~~~~~~~A~~~~~~al~~~p~~-~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~~g~~~~A 111 (1173)
+..|+ |.+|+..+++....+|++ .++...++++|.. .|++++|+..++. .+|.+..++..++..+...|+.++|
T Consensus 10 ~~~g~-y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~-~g~~~~al~~~~~---~~~~~~~a~~~la~~~~~~~~~~~A 84 (291)
T 3mkr_A 10 FYIGS-YQQCINEAQRVKPSSPERDVERDVFLYRAYLA-QRKYGVVLDEIKP---SSAPELQAVRMFAEYLASHSRRDAI 84 (291)
T ss_dssp HHTTC-HHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHH-TTCHHHHHHHSCT---TSCHHHHHHHHHHHHHHCSTTHHHH
T ss_pred HHHHH-HHHHHHHHHhcccCCchhhHHHHHHHHHHHHH-CCCHHHHHHHhcc---cCChhHHHHHHHHHHHcCCCcHHHH
Confidence 34555 677776666655555554 3455666667777 7777776665544 2444455566666666666667777
Q ss_pred HHHHHHHHhh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 045024 112 VVVCREASDK--SPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIEL 189 (1173)
Q Consensus 112 ~~~~~~al~~--~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 189 (1173)
++.+++++.. +|+++.+++.+|.++...|++++|+..+++ |+++.++..+|.++...|++++|++.|+++++.
T Consensus 85 ~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~ 159 (291)
T 3mkr_A 85 VAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-----GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ 159 (291)
T ss_dssp HHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-----CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh
Confidence 7777766654 466666667777777777777777776665 666667777777777777777777777777766
Q ss_pred CCCChHHHHHHH--HHHHHcCChHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHH
Q 045024 190 DDTSIFPLLESG--NIFLMLGNFRKGVEQFQLALKISSENVSAHYGLASGLLGLAK 243 (1173)
Q Consensus 190 ~p~~~~a~~~la--~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~l~~ 243 (1173)
+|++.......+ .++...|++++|+..|+++++..|+++.+++.+|.++..+|+
T Consensus 160 ~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~ 215 (291)
T 3mkr_A 160 DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGR 215 (291)
T ss_dssp CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTC
T ss_pred CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC
Confidence 666543333222 233334667777777777777677666666666666665554
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.86 E-value=8e-20 Score=199.61 Aligned_cols=215 Identities=15% Similarity=0.130 Sum_probs=206.1
Q ss_pred HhCCCC-HHHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHH
Q 045024 16 EANPDD-PSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVS 94 (1173)
Q Consensus 16 ~~~P~~-~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a 94 (1173)
+.+|.+ +.+++.+|.++...|+ +++|+..|+++++.+|.++.++..+|.++.. .|++++|+..|+++++.+|.+..+
T Consensus 30 ~~~~~~~~~~~~~~a~~~~~~~~-~~~A~~~~~~al~~~~~~~~~~~~la~~~~~-~~~~~~A~~~~~~a~~~~~~~~~~ 107 (252)
T 2ho1_A 30 DKGRDEARDAYIQLGLGYLQRGN-TEQAKVPLRKALEIDPSSADAHAALAVVFQT-EMEPKLADEEYRKALASDSRNARV 107 (252)
T ss_dssp -CCHHHHHHHHHHHHHHHHHTTC-TGGGHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred ccchHHHHHHHHHHHHHHHHcCC-hHHHHHHHHHHHhcCCChHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHCcCcHHH
Confidence 346665 7899999999999987 9999999999999999999999999999999 999999999999999999999999
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 045024 95 GEALCELLEHGGKESLEVVVCREASD--KSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHR 172 (1173)
Q Consensus 95 ~~~La~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~ 172 (1173)
+..+|.++...|++++|+..+++++. ..|.++.++..+|.++...|++++|+..++++++.+|.++.++..+|.++..
T Consensus 108 ~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~ 187 (252)
T 2ho1_A 108 LNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYK 187 (252)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHH
Confidence 99999999999999999999999999 8899999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCHHHHH
Q 045024 173 LGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHY 232 (1173)
Q Consensus 173 ~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~ 232 (1173)
.|++++|+..++++++..|.+..++..++.++...|++++|...++++++..|+++....
T Consensus 188 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 247 (252)
T 2ho1_A 188 EREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQE 247 (252)
T ss_dssp TTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHH
Confidence 999999999999999999999999999999999999999999999999999999987653
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.85 E-value=3.4e-20 Score=221.85 Aligned_cols=202 Identities=12% Similarity=0.106 Sum_probs=128.0
Q ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHHc----CCHHHHHHHHHHHHhhCCCChhHHHHhHHHH-H--HhcCCHHHHHHHHH
Q 045024 405 HALIRGLQLDVSLADAWAHIGKLYGEV----GEKKLARQAFDSARSIDPSLALPWAGMSADV-Q--ASESLVDDAFESCL 477 (1173)
Q Consensus 405 ~a~~kal~l~p~~~~a~~~Lg~~y~~~----g~~e~A~~~f~~al~~~P~~~~a~~~l~a~~-~--~~~g~~~eA~~~~~ 477 (1173)
+.|+++.+..|..+..++.+|.+|... +++++|+.+|+++. |+++.+++. ++.+ + ...+++++|+.+|+
T Consensus 200 ~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~a~~~-Lg~~~~~~~~~~d~~~A~~~~~ 275 (452)
T 3e4b_A 200 KQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGYPASWVS-LAQLLYDFPELGDVEQMMKYLD 275 (452)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTHHHHH-HHHHHHHSGGGCCHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHHHHHH-HHHHHHhCCCCCCHHHHHHHHH
Confidence 344555555555555555555555443 45566666666654 555555555 3333 3 34556666666666
Q ss_pred HHHhcCCchHHHHHHHHHHHHhC---CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHH
Q 045024 478 RAVQILPLAEFQIGLAKLAKLSG---HLSSSQVFGAIQQAIQRGPHYPESHNLYGLVCEA----RSDYQAAVVSYRLARY 550 (1173)
Q Consensus 478 ~al~~~p~~~~~~~la~l~~~~g---~~~~~~A~~~l~~al~~~P~~~~a~~~lg~i~~~----~g~~~~A~~~~~kAl~ 550 (1173)
++.+.+ .+...+.++.++. .| ..+.++|+..|+++. |+++.+++.+|.+|.. ..++++|+.+|+++.+
T Consensus 276 ~Aa~~g-~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~ 350 (452)
T 3e4b_A 276 NGRAAD-QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV---GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAAR 350 (452)
T ss_dssp HHHHTT-CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT---TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHT
T ss_pred HHHHCC-CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHh
Confidence 655443 3445555555444 33 123456666777776 7889999999999987 4499999999999853
Q ss_pred HhhcCCCCCCCCchHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH--cCChHHHHHHHHH
Q 045024 551 AISSSSGTVPNSHFQDISINLARSLSR----AGNALDAVRECESLERQGMLDAEVLQVYAFSLWQ--LGKYDLALSMARN 624 (1173)
Q Consensus 551 l~~~~pe~~~~~~~~~~~~~La~~~~~----~g~~~eAi~~~~~~~~~~p~~~~~~~~la~a~~~--~g~~~eA~~~~~~ 624 (1173)
++++. +.++||.+|.. ..++++|+..|+++.+.++. .+...++.+... .++.++|....++
T Consensus 351 -----~g~~~------A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~--~a~~~l~~l~~~~~~~~~~~a~~~~~~ 417 (452)
T 3e4b_A 351 -----NGQNS------ADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTP--EANDLATQLEAPLTPAQRAEGQRLVQQ 417 (452)
T ss_dssp -----TTCTT------HHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCH--HHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred -----hChHH------HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCH--HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 22333 89999999985 46899999999999877654 444445555433 3456777777776
Q ss_pred Hhhh
Q 045024 625 LASS 628 (1173)
Q Consensus 625 aL~~ 628 (1173)
..+.
T Consensus 418 ~~~~ 421 (452)
T 3e4b_A 418 ELAA 421 (452)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 6663
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.85 E-value=8.4e-20 Score=189.47 Aligned_cols=171 Identities=19% Similarity=0.209 Sum_probs=98.9
Q ss_pred CHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q 045024 56 NAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYL 135 (1173)
Q Consensus 56 ~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~ 135 (1173)
++.+|+.+|.+|.. .|++++|+..|+++++++|+++.++..+|.++...|++++|+..+.+++...|+++.++..+|.+
T Consensus 4 ~~~iy~~lG~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 4 TTTIYMDIGDKKRT-KGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSA 82 (184)
T ss_dssp CHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHH
Confidence 34455555555555 55555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHH
Q 045024 136 QLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVE 215 (1173)
Q Consensus 136 ~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~ 215 (1173)
+...++++.|+..+.+++..+|++..++..+|.++...|++++|++.|+++++.+|+++.++..+|.+|..+|++++|+.
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~ 162 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVK 162 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHHH
Confidence 55555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHhhcCCC
Q 045024 216 QFQLALKISSEN 227 (1173)
Q Consensus 216 ~~~~al~~~p~~ 227 (1173)
.|+++++.+|++
T Consensus 163 ~~~~al~~~p~~ 174 (184)
T 3vtx_A 163 YFKKALEKEEKK 174 (184)
T ss_dssp HHHHHHHTTHHH
T ss_pred HHHHHHhCCccC
Confidence 555555555543
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.85 E-value=1.1e-19 Score=188.58 Aligned_cols=173 Identities=17% Similarity=0.210 Sum_probs=168.6
Q ss_pred CCHHHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 045024 20 DDPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALC 99 (1173)
Q Consensus 20 ~~~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La 99 (1173)
+++.+|+.+|.++..+|+ +++|+..|+++++.+|+++.++..+|.++.. .|++++|+..+.+++...|++..++..+|
T Consensus 3 e~~~iy~~lG~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 80 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGD-FDGAIRAYKKVLKADPNNVETLLKLGKTYMD-IGLPNDAIESLKKFVVLDTTSAEAYYILG 80 (184)
T ss_dssp -CHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCCCCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-CCCHHHHHHHHHHHHhcCchhHHHHHHHH
Confidence 578899999999999998 9999999999999999999999999999999 99999999999999999999999999999
Q ss_pred HHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Q 045024 100 ELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAA 179 (1173)
Q Consensus 100 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A 179 (1173)
.++...++++.|...+.+++...|+++.++..+|.++...|++++|+..|+++++.+|+++.++..+|.+|...|++++|
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCh
Q 045024 180 IKSYGRAIELDDTSI 194 (1173)
Q Consensus 180 ~~~~~~al~~~p~~~ 194 (1173)
+..|+++++++|+++
T Consensus 161 ~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 161 VKYFKKALEKEEKKA 175 (184)
T ss_dssp HHHHHHHHHTTHHHH
T ss_pred HHHHHHHHhCCccCH
Confidence 999999999998764
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.84 E-value=7e-20 Score=214.69 Aligned_cols=307 Identities=14% Similarity=0.101 Sum_probs=252.2
Q ss_pred CCCHHHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHccCCHHHHHHHHHHHHhh------C
Q 045024 19 PDDPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNA----VAFRYLGHYYTRFSIDTQRAIKCYQRAVSL------S 88 (1173)
Q Consensus 19 P~~~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~----~a~~~lg~~~~~~~g~~~eA~~~~~~al~~------~ 88 (1173)
+.....++.+|..++..|+ +++|+..|+++++..|+++ .++..+|.++.. .|++++|+..|+++++. .
T Consensus 6 ~~~~~~l~~~g~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~al~~~~~~~~~ 83 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGD-CRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFY-LHDYAKALEYHHHDLTLARTIGDQ 83 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHHhcc-HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHH-hcCHHHHHHHHHHHHHHHHhcccc
Confidence 4467788999999999998 9999999999999999984 688999999999 99999999999999887 3
Q ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc------HHHHHHHHHHHHHcCC--------------------H
Q 045024 89 PDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRA------FWAFRRLGYLQLHHKK--------------------W 142 (1173)
Q Consensus 89 p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~------~~a~~~la~~~~~~g~--------------------~ 142 (1173)
|....++..+|.++...|++++|+..++++++..|.. ..++..+|.++...|+ +
T Consensus 84 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~ 163 (406)
T 3sf4_A 84 LGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDAL 163 (406)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHH
Confidence 4446679999999999999999999999999886643 5589999999999999 9
Q ss_pred HHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh------HHHHHHHHHHHHcCCh
Q 045024 143 SEAVQSLQHAIRG------YPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSI------FPLLESGNIFLMLGNF 210 (1173)
Q Consensus 143 ~~A~~~l~~al~~------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~------~a~~~la~~~~~~g~~ 210 (1173)
++|+..+++++.. .|....++..+|.++...|++++|+..++++++..+... .++..+|.++...|++
T Consensus 164 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 243 (406)
T 3sf4_A 164 QAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEF 243 (406)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCh
Confidence 9999999999876 334466889999999999999999999999998866543 3889999999999999
Q ss_pred HHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHhhhcCChHHHHHHhchHHHHHh
Q 045024 211 RKGVEQFQLALKISSENVSAHYGLASGLLGLAKQCINLGAFRWGASLLEDACKVAEANTRLAGNMSCIWKLHGDIQLTYA 290 (1173)
Q Consensus 211 ~~A~~~~~~al~~~p~~~~a~~~la~~~~~l~~~~~a~g~~~~A~~~l~~Al~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 290 (1173)
++|+..|+++++..|.... ....+.++..+|..+...|++++|...++++++..+.... .+....++..+|.++...
T Consensus 244 ~~A~~~~~~al~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~-~~~~~~~~~~la~~~~~~- 320 (406)
T 3sf4_A 244 ETASEYYKKTLLLARQLKD-RAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELND-RIGEGRACWSLGNAYTAL- 320 (406)
T ss_dssp HHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHhCcC-chHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCC-cHHHHHHHHHHHHHHHHc-
Confidence 9999999999988765432 2345667777778888888899999999999988776432 122234444555554433
Q ss_pred hccchhhhhhchhhhhhhhhhhhHhhHhhhhHHHHHHHHHHHHHHhcCC------CCHHHHHHHHHHHHHHhhHHHh
Q 045024 291 KCFPWAEERQSLEFDVETFSASIVSWKTTCLMAAISSKSSYQRALYLAP------WQANIYTDIAITSDLIYSLNEA 361 (1173)
Q Consensus 291 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p------~~~~~~~~la~~~~~~g~~~eA 361 (1173)
+++++|+..|++++++.+ ....++..++.++...|+....
T Consensus 321 -------------------------------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~ 366 (406)
T 3sf4_A 321 -------------------------------GNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYST 366 (406)
T ss_dssp -------------------------------TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred -------------------------------CCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHHH
Confidence 346789999999988743 3466888999999988877544
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.84 E-value=4.8e-20 Score=220.54 Aligned_cols=381 Identities=14% Similarity=0.055 Sum_probs=252.2
Q ss_pred HHHHHHHHHccCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCH---HHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 045024 26 LDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDT---QRAIKCYQRAVSLSPDDSVSGEALCELL 102 (1173)
Q Consensus 26 ~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~---~eA~~~~~~al~~~p~~~~a~~~La~~~ 102 (1173)
..+|..++..|+ +++|+..|+++.+. .++.+++.+|.+|.. .|++ ++|+.+|+++++. ++.+++.+|.++
T Consensus 7 ~~la~~~~~~g~-~~~A~~~~~~aa~~--g~~~A~~~Lg~~y~~-~g~~~d~~~A~~~~~~A~~~---~~~A~~~Lg~~~ 79 (452)
T 3e4b_A 7 QRLANEALKRGD-TVTAQQNYQQLAEL--GYSEAQVGLADIQVG-TRDPAQIKQAEATYRAAADT---SPRAQARLGRLL 79 (452)
T ss_dssp HHHHHHHHHHHH-HHHHHHHHHHHHHH--TCCTGGGTCC--------------------------------CHHHHHHHH
T ss_pred HHHHHHHHhCCC-HHHHHHHHHHHHHC--CCHHHHHHHHHHHHc-cCCCCCHHHHHHHHHHHHhC---CHHHHHHHHHHH
Confidence 457888888887 99999999998765 467788899999998 8988 8999999999866 677889999977
Q ss_pred HHCC-----CHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCH
Q 045024 103 EHGG-----KESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRG-YPTSPHLWEALGLAYHRLGMF 176 (1173)
Q Consensus 103 ~~~g-----~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~-~p~~~~~~~~la~~~~~~g~~ 176 (1173)
...| ++++|+..|+++++.. ++.+++.+|.+|...+..+++...++..... .+.++.+++.+|.+|...+.+
T Consensus 80 ~~~~~~~~~~~~~A~~~~~~Aa~~g--~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~ 157 (452)
T 3e4b_A 80 AAKPGATEAEHHEAESLLKKAFANG--EGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTY 157 (452)
T ss_dssp HTC--CCHHHHHHHHHHHHHHHHTT--CSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCG
T ss_pred HhCCCCCCcCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCc
Confidence 6666 7889999999998844 4458889999998877655444433333322 234577889999999998865
Q ss_pred HHHHHH----HHHHHHhCCCChHHHHHHHHHHHHcC---ChHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhh
Q 045024 177 SAAIKS----YGRAIELDDTSIFPLLESGNIFLMLG---NFRKGVEQFQLALKISSENVSAHYGLASGLLGLAKQCINLG 249 (1173)
Q Consensus 177 ~~A~~~----~~~al~~~p~~~~a~~~la~~~~~~g---~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~l~~~~~a~g 249 (1173)
+++... ++.+.. .++.+++.+|.+|...| ++++|+..|+++.+..|.....++.+|.++.....
T Consensus 158 ~~~~~~a~~~~~~a~~---~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~------ 228 (452)
T 3e4b_A 158 DQHLDDVERICKAALN---TTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATL------ 228 (452)
T ss_dssp GGGHHHHHHHHHHHTT---TCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGG------
T ss_pred ccCHHHHHHHHHHHHc---CCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC------
Confidence 555444 444433 34458899999999999 89999999999999888887766777766632100
Q ss_pred cHHHHHHHHHHHHHHHHHHhhhcCChHHHHHHhchHHHHHhhccchhhhhhchhhhhhhhhhhhHhhHhhhhHHHHHHHH
Q 045024 250 AFRWGASLLEDACKVAEANTRLAGNMSCIWKLHGDIQLTYAKCFPWAEERQSLEFDVETFSASIVSWKTTCLMAAISSKS 329 (1173)
Q Consensus 250 ~~~~A~~~l~~Al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~ 329 (1173)
...+.++|+.
T Consensus 229 ----------------------------------------------------------------------~~~d~~~A~~ 238 (452)
T 3e4b_A 229 ----------------------------------------------------------------------GTPDEKTAQA 238 (452)
T ss_dssp ----------------------------------------------------------------------SSCCHHHHHH
T ss_pred ----------------------------------------------------------------------CCCCHHHHHH
Confidence 0011346777
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHH---HHhhHHHhhhhhhhhhHHHHHHHHHHHhhcCCCHHHHHHHHHhhcccHHHHHH
Q 045024 330 SYQRALYLAPWQANIYTDIAITSD---LIYSLNEAYGHYQSAWHVSEKMALGALLLEGDNCQFWVTLGCLSNYNGLKQHA 406 (1173)
Q Consensus 330 ~~~~al~l~p~~~~~~~~la~~~~---~~g~~~eA~~~~~~~~~~A~k~~~~al~~~p~~~~~~~~Lg~~~~~~~~a~~a 406 (1173)
.|+++. |+++.+++.+|.+|. ..+++ ..+.+.
T Consensus 239 ~~~~aa---~g~~~a~~~Lg~~~~~~~~~~d~------------------------------------------~~A~~~ 273 (452)
T 3e4b_A 239 LLEKIA---PGYPASWVSLAQLLYDFPELGDV------------------------------------------EQMMKY 273 (452)
T ss_dssp HHHHHG---GGSTHHHHHHHHHHHHSGGGCCH------------------------------------------HHHHHH
T ss_pred HHHHHc---CCCHHHHHHHHHHHHhCCCCCCH------------------------------------------HHHHHH
Confidence 888877 788888888888743 12222 344556
Q ss_pred HHHHHhcCCCcHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHhhCCCChhHHHHhHHHHHHh----cCCHHHHHHHHH
Q 045024 407 LIRGLQLDVSLADAWAHIGKLYGEVG-----EKKLARQAFDSARSIDPSLALPWAGMSADVQAS----ESLVDDAFESCL 477 (1173)
Q Consensus 407 ~~kal~l~p~~~~a~~~Lg~~y~~~g-----~~e~A~~~f~~al~~~P~~~~a~~~l~a~~~~~----~g~~~eA~~~~~ 477 (1173)
|+++.+. +++.+++.||.+|. .| ++++|+.+|+++. |.++.++++ ++.+|.. ..++++|+.+|+
T Consensus 274 ~~~Aa~~--g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---~g~~~A~~~-Lg~~y~~G~g~~~d~~~A~~~~~ 346 (452)
T 3e4b_A 274 LDNGRAA--DQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV---GREVAADYY-LGQIYRRGYLGKVYPQKALDHLL 346 (452)
T ss_dssp HHHHHHT--TCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT---TTCHHHHHH-HHHHHHTTTTSSCCHHHHHHHHH
T ss_pred HHHHHHC--CCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh---CCCHHHHHH-HHHHHHCCCCCCcCHHHHHHHHH
Confidence 6676643 47889999999988 55 9999999999988 888888888 5657754 337888888777
Q ss_pred HHHhcCCchHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHhh
Q 045024 478 RAVQILPLAEFQIGLAKLAKLSGHLSSSQVFGAIQQAIQRGPHYPESHNLYGLVCEA----RSDYQAAVVSYRLARYAIS 553 (1173)
Q Consensus 478 ~al~~~p~~~~~~~la~l~~~~g~~~~~~A~~~l~~al~~~P~~~~a~~~lg~i~~~----~g~~~~A~~~~~kAl~l~~ 553 (1173)
++.+ ++++.+.+.+|.+|.. .+++++|..+|+++.+.
T Consensus 347 ~Aa~-------------------------------------~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~-- 387 (452)
T 3e4b_A 347 TAAR-------------------------------------NGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQ-- 387 (452)
T ss_dssp HHHT-------------------------------------TTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTT--
T ss_pred HHHh-------------------------------------hChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHC--
Confidence 7654 3456677888888875 46899999999988522
Q ss_pred cCCCCCCCCchHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHc
Q 045024 554 SSSGTVPNSHFQDISINLARSLSRA--GNALDAVRECESLERQ 594 (1173)
Q Consensus 554 ~~pe~~~~~~~~~~~~~La~~~~~~--g~~~eAi~~~~~~~~~ 594 (1173)
....+...++.+.... ++..+|....++..+.
T Consensus 388 ---------g~~~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~~ 421 (452)
T 3e4b_A 388 ---------DTPEANDLATQLEAPLTPAQRAEGQRLVQQELAA 421 (452)
T ss_dssp ---------CCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred ---------CCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 1123555666654333 3466676666666543
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.84 E-value=1.8e-19 Score=199.12 Aligned_cols=233 Identities=17% Similarity=0.183 Sum_probs=208.5
Q ss_pred HHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHH
Q 045024 4 KGALLLQLEDSLEAN----PDDPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIK 79 (1173)
Q Consensus 4 ~~aAi~~l~~al~~~----P~~~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~ 79 (1173)
..+|+..|+++++.. |.++.+++.+|.++...|+ +++|+..|+++++.+|+++.++..+|.++.. .|++++|+.
T Consensus 21 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~al~~~~~~~~~~~~la~~~~~-~~~~~~A~~ 98 (275)
T 1xnf_A 21 QEVILARMEQILASRALTDDERAQLLYERGVLYDSLGL-RALARNDFSQALAIRPDMPEVFNYLGIYLTQ-AGNFDAAYE 98 (275)
T ss_dssp HHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-TTCHHHHHH
T ss_pred HHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHccc-HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH-ccCHHHHHH
Confidence 345799999999973 5678899999999999998 9999999999999999999999999999999 999999999
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 045024 80 CYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTS 159 (1173)
Q Consensus 80 ~~~~al~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~ 159 (1173)
.|+++++.+|++..++..+|.++...|++++|+..++++++..|+++......+.. ...|++++|+..+++++...|.+
T Consensus 99 ~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~A~~~~~~~~~~~~~~ 177 (275)
T 1xnf_A 99 AFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLA-EQKLDEKQAKEVLKQHFEKSDKE 177 (275)
T ss_dssp HHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH-HHHHCHHHHHHHHHHHHHHSCCC
T ss_pred HHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHH-HHhcCHHHHHHHHHHHHhcCCcc
Confidence 99999999999999999999999999999999999999999999998766665544 67799999999999999999988
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----ChHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCHHHHHHHH
Q 045024 160 PHLWEALGLAYHRLGMFSAAIKSYGRAIELDDT----SIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLA 235 (1173)
Q Consensus 160 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~----~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la 235 (1173)
...+. ++.++...++.++|+..++++++..|. +..++..+|.++...|++++|+..|+++++.+|++...+ +
T Consensus 178 ~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~---~ 253 (275)
T 1xnf_A 178 QWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEH---R 253 (275)
T ss_dssp STHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHHH---H
T ss_pred hHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHHHH---H
Confidence 66654 788888999999999999999887664 368899999999999999999999999999999875433 5
Q ss_pred HHHHHHHH
Q 045024 236 SGLLGLAK 243 (1173)
Q Consensus 236 ~~~~~l~~ 243 (1173)
.++..+++
T Consensus 254 ~~~~~l~~ 261 (275)
T 1xnf_A 254 YALLELSL 261 (275)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 56666666
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.83 E-value=1.3e-16 Score=201.36 Aligned_cols=126 Identities=13% Similarity=0.051 Sum_probs=85.9
Q ss_pred CHHHHHHHHHHHHHHhhHHHhhhhhhhhhHHHHHHHHHHHhhcCCCHHHHHHHHHhhcc--cH---HHHHHHHHHHhcCC
Q 045024 341 QANIYTDIAITSDLIYSLNEAYGHYQSAWHVSEKMALGALLLEGDNCQFWVTLGCLSNY--NG---LKQHALIRGLQLDV 415 (1173)
Q Consensus 341 ~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~A~k~~~~al~~~p~~~~~~~~Lg~~~~~--~~---~a~~a~~kal~l~p 415 (1173)
+++.+..++..|...|.++++ +..++.++.++|.+...+..+|.++.+ ++ .+.+.|...+.+.|
T Consensus 1279 ~~deLeeli~yYe~~G~feEA-----------I~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~rini~k 1347 (1630)
T 1xi4_A 1279 HADELEELINYYQDRGYFEEL-----------ITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPK 1347 (1630)
T ss_pred CHHHHHHHHHHHHHcCCHHHH-----------HHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccch
Confidence 344555777777777777777 455678888888888888888877773 33 34456777777766
Q ss_pred -----CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh------------hCCCChhHHHHhHHHHHHhcCCHHHHHHHHHH
Q 045024 416 -----SLADAWAHIGKLYGEVGEKKLARQAFDSARS------------IDPSLALPWAGMSADVQASESLVDDAFESCLR 478 (1173)
Q Consensus 416 -----~~~~a~~~Lg~~y~~~g~~e~A~~~f~~al~------------~~P~~~~a~~~l~a~~~~~~g~~~eA~~~~~~ 478 (1173)
.++..|..+..+|.+-|+++.|+...-.... ..+.+++.++. .+..|. +...+++..+..
T Consensus 1348 ~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~kv~n~elyyk-ai~Fyl--~~~P~~lndLl~ 1424 (1630)
T 1xi4_A 1348 VLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYR-AIQFYL--EFKPLLLNDLLM 1424 (1630)
T ss_pred HhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhcccccHHHHHH-HHHHHH--hhChHHHHHHHH
Confidence 6788899999999999999999843332221 15667777776 554554 444555555555
Q ss_pred HH
Q 045024 479 AV 480 (1173)
Q Consensus 479 al 480 (1173)
++
T Consensus 1425 ~l 1426 (1630)
T 1xi4_A 1425 VL 1426 (1630)
T ss_pred Hh
Confidence 55
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.83 E-value=1e-19 Score=219.05 Aligned_cols=214 Identities=16% Similarity=0.110 Sum_probs=183.0
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCH-HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Q 045024 39 KEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDT-QRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCRE 117 (1173)
Q Consensus 39 ~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~-~eA~~~~~~al~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~ 117 (1173)
+++++..+++.....|.++.+++.+|.++.. .|++ ++|+..|+++++.+|++..++..+|.+|...|++++|+..|++
T Consensus 84 ~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~-~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 162 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQVEAQALMLKGKALNV-TPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSG 162 (474)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHTS-SSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCchhHHHHHHHHHHHHh-ccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 6788888888888888888888888888888 8888 8888888888888888888888888888888888888888888
Q ss_pred HHhhCCCcHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc--------CCHHHHH
Q 045024 118 ASDKSPRAFWAFRRLGYLQLHH---------KKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRL--------GMFSAAI 180 (1173)
Q Consensus 118 al~~~p~~~~a~~~la~~~~~~---------g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~--------g~~~~A~ 180 (1173)
+++.+|+ ..++..+|.++... |++++|+..|+++++.+|+++.++..+|.+|... |++++|+
T Consensus 163 al~~~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~ 241 (474)
T 4abn_A 163 ALTHCKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQAL 241 (474)
T ss_dssp HHTTCCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHhhCCC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHH
Confidence 8888888 68888888888888 8888888888888888888888888888888888 8888888
Q ss_pred HHHHHHHHhCC---CChHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhhcHHHH
Q 045024 181 KSYGRAIELDD---TSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLASGLLGLAKQCINLGAFRWG 254 (1173)
Q Consensus 181 ~~~~~al~~~p---~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~l~~~~~a~g~~~~A 254 (1173)
..|+++++++| +++.+++.+|.+|...|++++|+..|+++++.+|+++.++..++.++..+|+...+...+.+.
T Consensus 242 ~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 242 SAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 88888888888 888888888888888888888888888888888888888888888888888877776655443
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.83 E-value=1.4e-16 Score=200.98 Aligned_cols=489 Identities=14% Similarity=0.075 Sum_probs=311.1
Q ss_pred HHHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHH
Q 045024 22 PSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQ----NAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEA 97 (1173)
Q Consensus 22 ~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~----~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~ 97 (1173)
|+---.....|...|. +.+|++.|++++ +.|+ +...-..++.+..+ . +..+..++..+.-..+ ...
T Consensus 985 PeeVs~~vKaf~~agl-p~EaieLLEKiv-l~~s~fs~n~~LqnlLi~tAIk-a-D~~Rv~eyI~kLd~~d------~~e 1054 (1630)
T 1xi4_A 985 PEEVSVTVKAFMTADL-PNELIELLEKIV-LDNSVFSEHRNLQNLLILTAIK-A-DRTRVMEYINRLDNYD------APD 1054 (1630)
T ss_pred HHHhHHHHHHHHhCCC-HHHHHHHHHHHH-cCCCcccccHHHHHHHHHHHHH-h-ChhhHHHHHHHhhhcc------HHH
Confidence 3333445566666666 888888888888 3343 33444445555555 3 3444444444422111 234
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Q 045024 98 LCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFS 177 (1173)
Q Consensus 98 La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~ 177 (1173)
+|.++...|.+++|..+|+++- ....+ +...+...|++++|++.++++ +.+.+|+.+|.++...|+++
T Consensus 1055 IA~Iai~lglyEEAf~IYkKa~----~~~~A---~~VLie~i~nldrAiE~Aerv-----n~p~vWsqLAKAql~~G~~k 1122 (1630)
T 1xi4_A 1055 IANIAISNELFEEAFAIFRKFD----VNTSA---VQVLIEHIGNLDRAYEFAERC-----NEPAVWSQLAKAQLQKGMVK 1122 (1630)
T ss_pred HHHHHHhCCCHHHHHHHHHHcC----CHHHH---HHHHHHHHhhHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCCHH
Confidence 7888899999999999999863 11111 233344788889998888865 56889999999999999999
Q ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhhcHHHHHHH
Q 045024 178 AAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLASGLLGLAKQCINLGAFRWGASL 257 (1173)
Q Consensus 178 ~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~l~~~~~a~g~~~~A~~~ 257 (1173)
+|+..|.++ +++..+..+|.++.+.|++++|+++|..+.+..++. .+...+|.+|.++++ ++
T Consensus 1123 EAIdsYiKA-----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~-~Idt~LafaYAKl~r-------le----- 1184 (1630)
T 1xi4_A 1123 EAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARES-YVETELIFALAKTNR-------LA----- 1184 (1630)
T ss_pred HHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccc-cccHHHHHHHHhhcC-------HH-----
Confidence 999999775 778888999999999999999999999988877542 223346777776655 22
Q ss_pred HHHHHHHHHHHhhhcCChHHHHHHhchHHHHHhhccchhhhhhchhhhhhhhhhhhHhhHhhhhHHHHHHHHHHHHHHhc
Q 045024 258 LEDACKVAEANTRLAGNMSCIWKLHGDIQLTYAKCFPWAEERQSLEFDVETFSASIVSWKTTCLMAAISSKSSYQRALYL 337 (1173)
Q Consensus 258 l~~Al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l 337 (1173)
+ ++.+.. .++. ..+...|+.+... +.+++|+..|.++
T Consensus 1185 --e-le~fI~----~~n~-ad~~~iGd~le~e--------------------------------g~YeeA~~~Y~kA--- 1221 (1630)
T 1xi4_A 1185 --E-LEEFIN----GPNN-AHIQQVGDRCYDE--------------------------------KMYDAAKLLYNNV--- 1221 (1630)
T ss_pred --H-HHHHHh----CCCH-HHHHHHHHHHHhc--------------------------------CCHHHHHHHHHhh---
Confidence 1 111110 1122 2233455554433 3477899999885
Q ss_pred CCCCHHHHHHHHHHHHHHhhHHHhhhhhhhhhHHHHHHHHHHHhhcCCCHHHHHHHHHhhcccH---HHHHHHHHHHhcC
Q 045024 338 APWQANIYTDIAITSDLIYSLNEAYGHYQSAWHVSEKMALGALLLEGDNCQFWVTLGCLSNYNG---LKQHALIRGLQLD 414 (1173)
Q Consensus 338 ~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~A~k~~~~al~~~p~~~~~~~~Lg~~~~~~~---~a~~a~~kal~l~ 414 (1173)
..|..++.++.++|++++|. +.+.++ .+..+|...+.+..+.+ .|+.+... +.
T Consensus 1222 -----~ny~rLA~tLvkLge~q~AI-----------EaarKA-----~n~~aWkev~~acve~~Ef~LA~~cgl~-Ii-- 1277 (1630)
T 1xi4_A 1222 -----SNFGRLASTLVHLGEYQAAV-----------DGARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLH-IV-- 1277 (1630)
T ss_pred -----hHHHHHHHHHHHhCCHHHHH-----------HHHHHh-----CCHHHHHHHHHHHhhhhHHHHHHHHHHh-hh--
Confidence 47889999999999988883 334444 56688888887776544 34444332 22
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhHHHHhHHHHHH--hcCCHHHHHHHHHHHHhcCC------ch
Q 045024 415 VSLADAWAHIGKLYGEVGEKKLARQAFDSARSIDPSLALPWAGMSADVQA--SESLVDDAFESCLRAVQILP------LA 486 (1173)
Q Consensus 415 p~~~~a~~~Lg~~y~~~g~~e~A~~~f~~al~~~P~~~~a~~~l~a~~~~--~~g~~~eA~~~~~~al~~~p------~~ 486 (1173)
.+++.+..++..|...|.+++|+..|++++.++|.+...+.. ++.++. +-++..++++.|...+.+.| ..
T Consensus 1278 -v~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftE-LaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~ 1355 (1630)
T 1xi4_A 1278 -VHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTE-LAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQA 1355 (1630)
T ss_pred -cCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHH-HHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHH
Confidence 356667799999999999999999999999999998888866 444554 56778888888888888766 23
Q ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHHHHh------------CCCCHHHHHHHHHHHHHcC---------------CHH
Q 045024 487 EFQIGLAKLAKLSGHLSSSQVFGAIQQAIQR------------GPHYPESHNLYGLVCEARS---------------DYQ 539 (1173)
Q Consensus 487 ~~~~~la~l~~~~g~~~~~~A~~~l~~al~~------------~P~~~~a~~~lg~i~~~~g---------------~~~ 539 (1173)
..+..+..++...+++ +.|...+-..... .+.+++.++.....|...+ +++
T Consensus 1356 ~lW~elv~LY~~~~e~--dnA~~tm~~h~~~a~~~~~Fk~~i~kv~n~elyykai~Fyl~~~P~~lndLl~~l~~rlD~~ 1433 (1630)
T 1xi4_A 1356 HLWAELVFLYDKYEEY--DNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHT 1433 (1630)
T ss_pred HHHHHHHHHHHhcccH--HHHHHHHHhccHhhhhhHHHHHHhcccccHHHHHHHHHHHHhhChHHHHHHHHHhhhcCChH
Confidence 4455566666666663 4555333222211 5678888888888888777 777
Q ss_pred HHHHHHHHHH------HHhhcCCCCCCCCchHHHHHHHHHHHHhcCCHH---HHHHHHHHHH----HcCCCCHHH--HHH
Q 045024 540 AAVVSYRLAR------YAISSSSGTVPNSHFQDISINLARSLSRAGNAL---DAVRECESLE----RQGMLDAEV--LQV 604 (1173)
Q Consensus 540 ~A~~~~~kAl------~l~~~~pe~~~~~~~~~~~~~La~~~~~~g~~~---eAi~~~~~~~----~~~p~~~~~--~~~ 604 (1173)
.++..|++.- ..+.... ..+...+--.+..++....+++ ..++.|...- ....+..+. +..
T Consensus 1434 R~V~l~~~~~~l~lik~yl~~vq----~~n~~~Vneal~el~ieeed~~~Lr~si~~~~nfd~~~La~~lekheLl~frr 1509 (1630)
T 1xi4_A 1434 RAVNYFSKVKQLPLVKPYLRSVQ----NHNNKSVNESLNNLFITEEDYQALRTSIDAYDNFDNISLAQRLEKHELIEFRR 1509 (1630)
T ss_pred HHHHHHHHcCChHHhHHHHHHHH----HhcchhhhHHHHHHhcCccchHHHHHHHhhccCcCHHHHHHHhhhhhHHHHHH
Confidence 7777777331 1111000 1112224445666666666653 2232222210 000111111 133
Q ss_pred HH-HHHHHcCChHHHHHHHHHH
Q 045024 605 YA-FSLWQLGKYDLALSMARNL 625 (1173)
Q Consensus 605 la-~a~~~~g~~~eA~~~~~~a 625 (1173)
+| .+|-+.|+|..|++.+++.
T Consensus 1510 IAa~ly~~n~~~~~ai~l~k~d 1531 (1630)
T 1xi4_A 1510 IAAYLFKGNNRWKQSVELCKKD 1531 (1630)
T ss_pred HHHHHHHhcCcHHHHHHHHHhc
Confidence 44 4455559999999988864
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.82 E-value=3.1e-19 Score=210.27 Aligned_cols=285 Identities=17% Similarity=0.126 Sum_probs=237.9
Q ss_pred CCHHHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHccCCHHHHHHHHHHHHhh------CC
Q 045024 20 DDPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNA----VAFRYLGHYYTRFSIDTQRAIKCYQRAVSL------SP 89 (1173)
Q Consensus 20 ~~~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~----~a~~~lg~~~~~~~g~~~eA~~~~~~al~~------~p 89 (1173)
.....++.+|..++..|+ +++|+..|+++++.+|+++ .++..+|.++.. .|++++|+..|+++++. .|
T Consensus 46 ~~~~~l~~~g~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~ 123 (411)
T 4a1s_A 46 SMCLELALEGERLCNAGD-CRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFY-LGDYNKAMQYHKHDLTLAKSMNDRL 123 (411)
T ss_dssp HHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHHccCch
Confidence 345667889999999997 9999999999999999987 589999999999 99999999999999987 46
Q ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh------CCCcHHHHHHHHHHHHHcCC-----------------HHHHH
Q 045024 90 DDSVSGEALCELLEHGGKESLEVVVCREASDK------SPRAFWAFRRLGYLQLHHKK-----------------WSEAV 146 (1173)
Q Consensus 90 ~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~------~p~~~~a~~~la~~~~~~g~-----------------~~~A~ 146 (1173)
....++..+|.++...|++++|+..++++++. .|....++..+|.++...|+ +++|+
T Consensus 124 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~ 203 (411)
T 4a1s_A 124 GEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAV 203 (411)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHH
Confidence 66778999999999999999999999999888 45567899999999999999 99999
Q ss_pred HHHHHHHHhC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh------HHHHHHHHHHHHcCChHHHH
Q 045024 147 QSLQHAIRGY------PTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSI------FPLLESGNIFLMLGNFRKGV 214 (1173)
Q Consensus 147 ~~l~~al~~~------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~------~a~~~la~~~~~~g~~~~A~ 214 (1173)
..+++++.+. +....++..+|.++...|++++|+..++++++..+... .++..+|.++...|++++|+
T Consensus 204 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 283 (411)
T 4a1s_A 204 EFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAA 283 (411)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHH
Confidence 9999998763 23456889999999999999999999999999876533 38899999999999999999
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHhhhcCChHHHHHHhchHHHHHhhccc
Q 045024 215 EQFQLALKISSENVSAHYGLASGLLGLAKQCINLGAFRWGASLLEDACKVAEANTRLAGNMSCIWKLHGDIQLTYAKCFP 294 (1173)
Q Consensus 215 ~~~~~al~~~p~~~~a~~~la~~~~~l~~~~~a~g~~~~A~~~l~~Al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 294 (1173)
..|++++...+.... ....+.++..+|..+...|++++|...+++++...+.... ......++..++.++...
T Consensus 284 ~~~~~al~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~la~~~~~~----- 356 (411)
T 4a1s_A 284 EHYKRTLALAVELGE-REVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGD-RIGEARACWSLGNAHSAI----- 356 (411)
T ss_dssp HHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCC-hHHHHHHHHHHHHHHHHh-----
Confidence 999999998775422 2244666777777888888899999999999998776532 122333444445444333
Q ss_pred hhhhhhchhhhhhhhhhhhHhhHhhhhHHHHHHHHHHHHHHhcCCC
Q 045024 295 WAEERQSLEFDVETFSASIVSWKTTCLMAAISSKSSYQRALYLAPW 340 (1173)
Q Consensus 295 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~ 340 (1173)
+++++|+..|++++++.+.
T Consensus 357 ---------------------------g~~~~A~~~~~~al~~~~~ 375 (411)
T 4a1s_A 357 ---------------------------GGHERALKYAEQHLQLAXX 375 (411)
T ss_dssp ---------------------------TCHHHHHHHHHHHHHHCCH
T ss_pred ---------------------------ccHHHHHHHHHHHHHHHhh
Confidence 4477899999999998764
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.82 E-value=1.5e-18 Score=196.67 Aligned_cols=223 Identities=11% Similarity=0.082 Sum_probs=205.6
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-------ccCcH-------HHHHHHHHHHHH-hCCCCHHHHHHHHHHHHH
Q 045024 5 GALLLQLEDSLEANPDDPSLHLDLGLHLWE-------NSESK-------EKAAEHFVIAAK-LNPQNAVAFRYLGHYYTR 69 (1173)
Q Consensus 5 ~aAi~~l~~al~~~P~~~~~~~~lg~~~~~-------~~~~~-------~~A~~~~~~al~-~~p~~~~a~~~lg~~~~~ 69 (1173)
..|+..|+++++.+|+++.+|+.+|..+.. .|+ + ++|+..|+++++ .+|++..+|..+|.++..
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~-~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGD-MNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSC-CHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccc-hhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 457899999999999999999999999874 354 5 899999999999 799999999999999999
Q ss_pred ccCCHHHHHHHHHHHHhhCCCCHH-HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH-cCCHHHHHH
Q 045024 70 FSIDTQRAIKCYQRAVSLSPDDSV-SGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLH-HKKWSEAVQ 147 (1173)
Q Consensus 70 ~~g~~~eA~~~~~~al~~~p~~~~-a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~-~g~~~~A~~ 147 (1173)
.|++++|...|+++++.+|.++. +|..+|.++...|++++|+..|+++++..|.+..++...+..... .|++++|+.
T Consensus 112 -~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~ 190 (308)
T 2ond_A 112 -RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFK 190 (308)
T ss_dssp -TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHH
T ss_pred -cCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHHH
Confidence 99999999999999999999987 899999999999999999999999999999988888766666544 799999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCC-ChHHHHHHHHHHHHcCChHHHHHHHHHHHhh
Q 045024 148 SLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIEL---DDT-SIFPLLESGNIFLMLGNFRKGVEQFQLALKI 223 (1173)
Q Consensus 148 ~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p~-~~~a~~~la~~~~~~g~~~~A~~~~~~al~~ 223 (1173)
.|+++++.+|+++.+|..+|.++...|++++|+..|++++.. .|+ ....|..++..+...|++++|...++++++.
T Consensus 191 ~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~ 270 (308)
T 2ond_A 191 IFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999996 553 6789999999999999999999999999999
Q ss_pred cCCCHH
Q 045024 224 SSENVS 229 (1173)
Q Consensus 224 ~p~~~~ 229 (1173)
.|++..
T Consensus 271 ~p~~~~ 276 (308)
T 2ond_A 271 FREEYE 276 (308)
T ss_dssp TTTTTS
T ss_pred cccccc
Confidence 998664
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.82 E-value=2.8e-19 Score=209.56 Aligned_cols=283 Identities=19% Similarity=0.174 Sum_probs=238.2
Q ss_pred HHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHccCcHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHccCCH
Q 045024 5 GALLLQLEDSLEANPDDP----SLHLDLGLHLWENSESKEKAAEHFVIAAKL------NPQNAVAFRYLGHYYTRFSIDT 74 (1173)
Q Consensus 5 ~aAi~~l~~al~~~P~~~----~~~~~lg~~~~~~~~~~~~A~~~~~~al~~------~p~~~~a~~~lg~~~~~~~g~~ 74 (1173)
.+|+..|+++++..|+++ .++..+|.+++..|+ +++|+..|++++.. .|..+.++..+|.++.. .|++
T Consensus 26 ~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~-~g~~ 103 (406)
T 3sf4_A 26 RAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHD-YAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKV-LGNF 103 (406)
T ss_dssp HHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-TTCH
T ss_pred HHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHH-cCCH
Confidence 446999999999999984 688999999999987 99999999999876 34457789999999999 9999
Q ss_pred HHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHCCC--------------------HHHHHHHHHHHHhh------C
Q 045024 75 QRAIKCYQRAVSLSPDD------SVSGEALCELLEHGGK--------------------ESLEVVVCREASDK------S 122 (1173)
Q Consensus 75 ~eA~~~~~~al~~~p~~------~~a~~~La~~~~~~g~--------------------~~~A~~~~~~al~~------~ 122 (1173)
++|+..++++++..|.. ..++..+|.++...|+ +++|+..+++++.. .
T Consensus 104 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~ 183 (406)
T 3sf4_A 104 DEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDR 183 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCc
Confidence 99999999999886643 3479999999999999 99999999999876 3
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---
Q 045024 123 PRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTS------PHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTS--- 193 (1173)
Q Consensus 123 p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--- 193 (1173)
|....++..+|.++...|++++|+..++++++..|.. ..++..+|.++...|++++|+..++++++..|..
T Consensus 184 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 263 (406)
T 3sf4_A 184 AAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDR 263 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCc
Confidence 3446789999999999999999999999999876543 3388999999999999999999999999887654
Q ss_pred ---hHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHhh
Q 045024 194 ---IFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLASGLLGLAKQCINLGAFRWGASLLEDACKVAEANTR 270 (1173)
Q Consensus 194 ---~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~l~~~~~a~g~~~~A~~~l~~Al~~~~~~~~ 270 (1173)
..++..+|.++...|++++|+..|+++++..+.... ....+.++..+|..+...|++++|...++++++..+....
T Consensus 264 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 342 (406)
T 3sf4_A 264 AVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELND-RIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGD 342 (406)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCC-cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Confidence 678899999999999999999999999998665432 2344566777777888888899999999999998876532
Q ss_pred hcCChHHHHHHhchHHHHHhh
Q 045024 271 LAGNMSCIWKLHGDIQLTYAK 291 (1173)
Q Consensus 271 ~~~~~~~~~~~~g~~~~~~~~ 291 (1173)
.+....++..++.++...++
T Consensus 343 -~~~~~~~~~~l~~~~~~~g~ 362 (406)
T 3sf4_A 343 -KSGELTARLNLSDLQMVLGL 362 (406)
T ss_dssp -HHHHHHHHHHHHHHHHHHHT
T ss_pred -CcchhHHHHHHHHHHHHhhH
Confidence 23445666677777766654
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.82 E-value=4.7e-19 Score=213.28 Aligned_cols=212 Identities=19% Similarity=0.157 Sum_probs=204.1
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCcH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 045024 6 ALLLQLEDSLEANPDDPSLHLDLGLHLWENSESK-EKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRA 84 (1173)
Q Consensus 6 aAi~~l~~al~~~P~~~~~~~~lg~~~~~~~~~~-~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~a 84 (1173)
.++..+++.....|.++.+++.+|.++...++ + ++|+..|+++++.+|+++.+++.+|.+|.. .|++++|+.+|+++
T Consensus 86 ~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~-~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~-~g~~~~A~~~~~~a 163 (474)
T 4abn_A 86 KTLQQMEEVLGSAQVEAQALMLKGKALNVTPD-YSPEAEVLLSKAVKLEPELVEAWNQLGEVYWK-KGDVTSAHTCFSGA 163 (474)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSS-CCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCchhHHHHHHHHHHHHhccc-cHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHH
Confidence 35778888888899999999999999999987 9 999999999999999999999999999999 99999999999999
Q ss_pred HhhCCCCHHHHHHHHHHHHHC---------CCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHc--------CCHHHHHH
Q 045024 85 VSLSPDDSVSGEALCELLEHG---------GKESLEVVVCREASDKSPRAFWAFRRLGYLQLHH--------KKWSEAVQ 147 (1173)
Q Consensus 85 l~~~p~~~~a~~~La~~~~~~---------g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~--------g~~~~A~~ 147 (1173)
++++|+ ..++..+|.++... |++++|+..|+++++.+|+++.++..+|.++... |++++|+.
T Consensus 164 l~~~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~ 242 (474)
T 4abn_A 164 LTHCKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALS 242 (474)
T ss_dssp HTTCCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HhhCCC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHH
Confidence 999999 79999999999999 9999999999999999999999999999999999 99999999
Q ss_pred HHHHHHHhCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHH
Q 045024 148 SLQHAIRGYP---TSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLA 220 (1173)
Q Consensus 148 ~l~~al~~~p---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~a 220 (1173)
.|+++++++| +++.++..+|.+|...|++++|+..|+++++++|++..++..++.++..+|++++|+..+.+.
T Consensus 243 ~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 243 AYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 9999999999 999999999999999999999999999999999999999999999999999999999877654
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.81 E-value=1.1e-18 Score=189.11 Aligned_cols=201 Identities=15% Similarity=0.122 Sum_probs=189.9
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 045024 6 ALLLQLEDSLEANPDDPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAV 85 (1173)
Q Consensus 6 aAi~~l~~al~~~P~~~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al 85 (1173)
.|+..|+++++.+|+++.+++.+|.++...|+ +++|+..|+++++.+|.++.++..+|.++.. .|++++|+..|++++
T Consensus 41 ~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~-~~~~~~A~~~~~~~~ 118 (243)
T 2q7f_A 41 KAAEAFTKAIEENKEDAIPYINFANLLSSVNE-LERALAFYDKALELDSSAATAYYGAGNVYVV-KEMYKEAKDMFEKAL 118 (243)
T ss_dssp -CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcccHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHcCCcchHHHHHHHHHHHH-hccHHHHHHHHHHHH
Confidence 45889999999999999999999999999987 9999999999999999999999999999999 999999999999999
Q ss_pred hhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 045024 86 SLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEA 165 (1173)
Q Consensus 86 ~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~ 165 (1173)
+.+|.+..++..+|.++...|++++|+..++++++..|+++.++..+|.++...|++++|+..++++++.+|+++.++..
T Consensus 119 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 198 (243)
T 2q7f_A 119 RAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYN 198 (243)
T ss_dssp HHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcC
Q 045024 166 LGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLG 208 (1173)
Q Consensus 166 la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g 208 (1173)
+|.++...|++++|+..++++++.+|++..++..++.+....|
T Consensus 199 la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~ 241 (243)
T 2q7f_A 199 AGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLLGHHHH 241 (243)
T ss_dssp HHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC------
T ss_pred HHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHHHHhhcc
Confidence 9999999999999999999999999999999988887765544
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.81 E-value=4e-18 Score=183.51 Aligned_cols=211 Identities=13% Similarity=0.070 Sum_probs=189.6
Q ss_pred CCCCHHHHHHHHHHHHHccCcHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHH
Q 045024 18 NPDDPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNP-QNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGE 96 (1173)
Q Consensus 18 ~P~~~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~ 96 (1173)
.|.++..++.+|.+++..|+ +++|+..|+++++.+| .+..+++.+|.++.. .|++++|+..|+++++.+|++..++.
T Consensus 3 ~~~~~~~~~~~g~~~~~~~~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~ 80 (228)
T 4i17_A 3 QTTDPNQLKNEGNDALNAKN-YAVAFEKYSEYLKLTNNQDSVTAYNCGVCADN-IKKYKEAADYFDIAIKKNYNLANAYI 80 (228)
T ss_dssp -CCCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHTTCSHHHHHH
T ss_pred cccCHHHHHHHHHHHHHccC-HHHHHHHHHHHHhccCCCCcHHHHHHHHHHHH-hhcHHHHHHHHHHHHHhCcchHHHHH
Confidence 45678999999999999998 9999999999999999 899999999999999 99999999999999999999999999
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCCCcH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHH
Q 045024 97 ALCELLEHGGKESLEVVVCREASDKSPRAF-------WAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPT--SPHLWEALG 167 (1173)
Q Consensus 97 ~La~~~~~~g~~~~A~~~~~~al~~~p~~~-------~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~--~~~~~~~la 167 (1173)
.+|.++...|++++|+..++++++.+|+++ .++..+|.++...|++++|+..|+++++.+|+ ++.++..+|
T Consensus 81 ~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 81 GKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHH
Confidence 999999999999999999999999999998 66999999999999999999999999999999 999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCHHHHHHHHHH
Q 045024 168 LAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLASG 237 (1173)
Q Consensus 168 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~ 237 (1173)
.+|...| ...++++..+.+.+...+ .+......+.+++|+..|+++++++|+++.+...++.+
T Consensus 161 ~~~~~~~-----~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i 223 (228)
T 4i17_A 161 VLFYNNG-----ADVLRKATPLASSNKEKY--ASEKAKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQV 223 (228)
T ss_dssp HHHHHHH-----HHHHHHHGGGTTTCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHH-----HHHHHHHHhcccCCHHHH--HHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHH
Confidence 9997665 445677777776664443 44556667889999999999999999999877666554
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.2e-18 Score=197.74 Aligned_cols=283 Identities=15% Similarity=0.124 Sum_probs=230.7
Q ss_pred HHHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHccCCHHHHHHHHHHHHhh------CCCC
Q 045024 22 PSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNA----VAFRYLGHYYTRFSIDTQRAIKCYQRAVSL------SPDD 91 (1173)
Q Consensus 22 ~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~----~a~~~lg~~~~~~~g~~~eA~~~~~~al~~------~p~~ 91 (1173)
...++..|..++..|+ +++|+..|+++++.+|+++ .++..+|.++.. .|++++|+..++++++. .|..
T Consensus 5 ~~~l~~~g~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~ 82 (338)
T 3ro2_A 5 CLELALEGERLCKSGD-CRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFY-LHDYAKALEYHHHDLTLARTIGDQLGE 82 (338)
T ss_dssp HHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHHhcc-HHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHhhcccccHHH
Confidence 4567888999999988 9999999999999999984 688899999999 99999999999999887 3445
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc------HHHHHHHHHHHHHcCC--------------------HHHH
Q 045024 92 SVSGEALCELLEHGGKESLEVVVCREASDKSPRA------FWAFRRLGYLQLHHKK--------------------WSEA 145 (1173)
Q Consensus 92 ~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~------~~a~~~la~~~~~~g~--------------------~~~A 145 (1173)
..++..+|.++...|++++|+..++++++..|.. ..++..+|.++...|+ +++|
T Consensus 83 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A 162 (338)
T 3ro2_A 83 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAA 162 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHH
Confidence 6679999999999999999999999998875532 4588999999999999 9999
Q ss_pred HHHHHHHHHhC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------hHHHHHHHHHHHHcCChHHH
Q 045024 146 VQSLQHAIRGY------PTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTS------IFPLLESGNIFLMLGNFRKG 213 (1173)
Q Consensus 146 ~~~l~~al~~~------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~a~~~la~~~~~~g~~~~A 213 (1173)
+..+++++... +....++..+|.++...|++++|+..++++++..+.. ..++..+|.++...|++++|
T Consensus 163 ~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 242 (338)
T 3ro2_A 163 VDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETA 242 (338)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHH
Confidence 99999998762 3345688999999999999999999999999876543 33889999999999999999
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHhhhcCChHHHHHHhchHHHHHhhcc
Q 045024 214 VEQFQLALKISSENVSAHYGLASGLLGLAKQCINLGAFRWGASLLEDACKVAEANTRLAGNMSCIWKLHGDIQLTYAKCF 293 (1173)
Q Consensus 214 ~~~~~~al~~~p~~~~a~~~la~~~~~l~~~~~a~g~~~~A~~~l~~Al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 293 (1173)
+..++++++..+.... ....+.++..+|..+...|++++|...+++++...+.... ......++..++.++...
T Consensus 243 ~~~~~~al~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~-~~~~~~~~~~la~~~~~~---- 316 (338)
T 3ro2_A 243 SEYYKKTLLLARQLKD-RAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKD-RIGEGRACWSLGNAYTAL---- 316 (338)
T ss_dssp HHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHhhcc-hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCC-cHHHHHHHHHHHHHHHHc----
Confidence 9999999988765432 2244566777777788888899999999999988776533 222334444555555443
Q ss_pred chhhhhhchhhhhhhhhhhhHhhHhhhhHHHHHHHHHHHHHHhcCCC
Q 045024 294 PWAEERQSLEFDVETFSASIVSWKTTCLMAAISSKSSYQRALYLAPW 340 (1173)
Q Consensus 294 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~ 340 (1173)
+++++|...|++++++.+.
T Consensus 317 ----------------------------g~~~~A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 317 ----------------------------GNHDQAMHFAEKHLEISRE 335 (338)
T ss_dssp ----------------------------TCHHHHHHHHHHHHHC---
T ss_pred ----------------------------CChHHHHHHHHHHHHHHHh
Confidence 3477899999999988764
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.81 E-value=1.6e-18 Score=191.45 Aligned_cols=189 Identities=14% Similarity=0.014 Sum_probs=168.4
Q ss_pred HccCcHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHH
Q 045024 34 ENSESKEKAAEHFVIAAKLN----PQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKES 109 (1173)
Q Consensus 34 ~~~~~~~~A~~~~~~al~~~----p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~~g~~~ 109 (1173)
..++ +++|+..|+++++.. |.++.+++.+|.++.. .|++++|+..|+++++.+|+++.++..+|.++...|+++
T Consensus 17 ~~~~-~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~ 94 (275)
T 1xnf_A 17 PTLQ-QEVILARMEQILASRALTDDERAQLLYERGVLYDS-LGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFD 94 (275)
T ss_dssp CCHH-HHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHH
T ss_pred ccch-HHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHH-cccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHH
Confidence 3455 999999999999873 4567899999999999 999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 045024 110 LEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIEL 189 (1173)
Q Consensus 110 ~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 189 (1173)
+|+..++++++.+|+++.++..+|.++...|++++|+..|+++++.+|++.......+.. ...|++++|+..+++++..
T Consensus 95 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~A~~~~~~~~~~ 173 (275)
T 1xnf_A 95 AAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLA-EQKLDEKQAKEVLKQHFEK 173 (275)
T ss_dssp HHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH-HHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHH-HHhcCHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999998766666544 6679999999999999999
Q ss_pred CCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCC
Q 045024 190 DDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSE 226 (1173)
Q Consensus 190 ~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 226 (1173)
.|.+...+ .++.++...++.++|+..+++++...|.
T Consensus 174 ~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 209 (275)
T 1xnf_A 174 SDKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTS 209 (275)
T ss_dssp SCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHH
T ss_pred CCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhccccc
Confidence 98876664 4777888889999999999998877654
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.81 E-value=6.2e-18 Score=180.33 Aligned_cols=204 Identities=13% Similarity=0.044 Sum_probs=186.0
Q ss_pred hCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHH
Q 045024 52 LNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRR 131 (1173)
Q Consensus 52 ~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~ 131 (1173)
..|+++.++..+|.++.. .|++++|+..|+++++.+|++..++..+|.++...|++++|+..++++++..|++..++..
T Consensus 3 ~~~~~~~~~~~~~~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 81 (225)
T 2vq2_A 3 KANQVSNIKTQLAMEYMR-GQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNN 81 (225)
T ss_dssp -CCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCcccHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHH
Confidence 467889999999999999 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHc-CCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcC
Q 045024 132 LGYLQLHH-KKWSEAVQSLQHAIR--GYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLG 208 (1173)
Q Consensus 132 la~~~~~~-g~~~~A~~~l~~al~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g 208 (1173)
+|.++... |++++|+..++++++ ..|.+..++..+|.++...|++++|+..++++++..|.++.++..+|.++...|
T Consensus 82 l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 161 (225)
T 2vq2_A 82 YGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAG 161 (225)
T ss_dssp HHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcC
Confidence 99999999 999999999999999 667778999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHhhcC-CCHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHH
Q 045024 209 NFRKGVEQFQLALKISS-ENVSAHYGLASGLLGLAKQCINLGAFRWGASLLEDACK 263 (1173)
Q Consensus 209 ~~~~A~~~~~~al~~~p-~~~~a~~~la~~~~~l~~~~~a~g~~~~A~~~l~~Al~ 263 (1173)
++++|+..++++++..| +++..+..++.++...|+ .+.+..+++.+.+
T Consensus 162 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 162 QLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGN-------AQAAYEYEAQLQA 210 (225)
T ss_dssp CHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTC-------HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCc-------HHHHHHHHHHHHH
Confidence 99999999999999999 888887666666655544 5555544444433
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.80 E-value=2e-18 Score=195.54 Aligned_cols=221 Identities=11% Similarity=-0.025 Sum_probs=195.8
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc------cCCH-------HHHHHHHHHHHh-hCCCCHHHHHHHHHHHHHC
Q 045024 40 EKAAEHFVIAAKLNPQNAVAFRYLGHYYTRF------SIDT-------QRAIKCYQRAVS-LSPDDSVSGEALCELLEHG 105 (1173)
Q Consensus 40 ~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~------~g~~-------~eA~~~~~~al~-~~p~~~~a~~~La~~~~~~ 105 (1173)
++|+..|++++..+|.++.+|+.+|..+... .|++ ++|+..|+++++ ++|++..+|..+|.++...
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~ 112 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 112 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 7899999999999999999999999998740 4885 999999999999 7999999999999999999
Q ss_pred CCHHHHHHHHHHHHhhCCCcHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCHHHHHHHH
Q 045024 106 GKESLEVVVCREASDKSPRAFW-AFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHR-LGMFSAAIKSY 183 (1173)
Q Consensus 106 g~~~~A~~~~~~al~~~p~~~~-a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~-~g~~~~A~~~~ 183 (1173)
|++++|+..|+++++..|.++. +|..+|.++...|++++|+..|+++++.+|.+..++...+.+... .|++++|+..|
T Consensus 113 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~ 192 (308)
T 2ond_A 113 MKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIF 192 (308)
T ss_dssp TCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999999999999886 999999999999999999999999999999998888877766544 79999999999
Q ss_pred HHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhh---cCC-CHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHH
Q 045024 184 GRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKI---SSE-NVSAHYGLASGLLGLAKQCINLGAFRWGASLLE 259 (1173)
Q Consensus 184 ~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~---~p~-~~~a~~~la~~~~~l~~~~~a~g~~~~A~~~l~ 259 (1173)
+++++.+|+++.++..+|.++...|++++|+..|++++.. .|+ ....+..++..+.. .|+++.+...++
T Consensus 193 ~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~-------~g~~~~a~~~~~ 265 (308)
T 2ond_A 193 ELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESN-------IGDLASILKVEK 265 (308)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHH-------HSCHHHHHHHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHH-------cCCHHHHHHHHH
Confidence 9999999999999999999999999999999999999995 453 56666666665554 455777777777
Q ss_pred HHHHHHHH
Q 045024 260 DACKVAEA 267 (1173)
Q Consensus 260 ~Al~~~~~ 267 (1173)
++++..+.
T Consensus 266 ~a~~~~p~ 273 (308)
T 2ond_A 266 RRFTAFRE 273 (308)
T ss_dssp HHHHHTTT
T ss_pred HHHHHccc
Confidence 77766654
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.80 E-value=4.5e-18 Score=185.64 Aligned_cols=207 Identities=17% Similarity=0.164 Sum_probs=190.0
Q ss_pred HhCCCC-HHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHH
Q 045024 51 KLNPQN-AVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAF 129 (1173)
Q Consensus 51 ~~~p~~-~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~ 129 (1173)
+.+|.+ +.+++.+|.++.. .|++++|+..|+++++.+|.+..++..+|.++...|++++|+..++++++..|.++.++
T Consensus 30 ~~~~~~~~~~~~~~a~~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~ 108 (252)
T 2ho1_A 30 DKGRDEARDAYIQLGLGYLQ-RGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVL 108 (252)
T ss_dssp -CCHHHHHHHHHHHHHHHHH-TTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred ccchHHHHHHHHHHHHHHHH-cCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHH
Confidence 345665 7899999999999 99999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc
Q 045024 130 RRLGYLQLHHKKWSEAVQSLQHAIR--GYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLML 207 (1173)
Q Consensus 130 ~~la~~~~~~g~~~~A~~~l~~al~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~ 207 (1173)
..+|.++...|++++|+..+++++. ..|.+..++..+|.++...|++++|+..++++++..|.+..++..+|.++...
T Consensus 109 ~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~ 188 (252)
T 2ho1_A 109 NNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKE 188 (252)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHc
Confidence 9999999999999999999999999 88889999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHH
Q 045024 208 GNFRKGVEQFQLALKISSENVSAHYGLASGLLGLAKQCINLGAFRWGASLLEDACKVA 265 (1173)
Q Consensus 208 g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~l~~~~~a~g~~~~A~~~l~~Al~~~ 265 (1173)
|++++|+..|+++++..|++...+..++.++...|+ +++|...++++++..
T Consensus 189 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-------~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 189 REYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFED-------RDTAASYGLQLKRLY 239 (252)
T ss_dssp TCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTC-------HHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccC-------HHHHHHHHHHHHHHC
Confidence 999999999999999999999888777777766554 666666666655543
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.80 E-value=5.1e-19 Score=208.39 Aligned_cols=261 Identities=19% Similarity=0.162 Sum_probs=225.7
Q ss_pred HHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHccCcHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHccCCH
Q 045024 5 GALLLQLEDSLEANPDDP----SLHLDLGLHLWENSESKEKAAEHFVIAAKL------NPQNAVAFRYLGHYYTRFSIDT 74 (1173)
Q Consensus 5 ~aAi~~l~~al~~~P~~~----~~~~~lg~~~~~~~~~~~~A~~~~~~al~~------~p~~~~a~~~lg~~~~~~~g~~ 74 (1173)
..|+..|+++++.+|+++ .+++.+|.++...|+ +++|+..|+++++. .|....++..+|.++.. .|++
T Consensus 65 ~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~ 142 (411)
T 4a1s_A 65 RAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGD-YNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKV-MGRF 142 (411)
T ss_dssp HHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-TTCH
T ss_pred HHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHH-CCCH
Confidence 446999999999999987 589999999999998 99999999999987 56678899999999999 9999
Q ss_pred HHHHHHHHHHHhh------CCCCHHHHHHHHHHHHHCCC-----------------HHHHHHHHHHHHhhC------CCc
Q 045024 75 QRAIKCYQRAVSL------SPDDSVSGEALCELLEHGGK-----------------ESLEVVVCREASDKS------PRA 125 (1173)
Q Consensus 75 ~eA~~~~~~al~~------~p~~~~a~~~La~~~~~~g~-----------------~~~A~~~~~~al~~~------p~~ 125 (1173)
++|+..|+++++. .|....++..+|.++...|+ +++|+..++++++.. +..
T Consensus 143 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~ 222 (411)
T 4a1s_A 143 DEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQ 222 (411)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 9999999999988 45566789999999999999 999999999998763 234
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------
Q 045024 126 FWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTS------PHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTS------ 193 (1173)
Q Consensus 126 ~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------ 193 (1173)
..++..+|.++...|++++|+..++++++..|.. ..++..+|.+|...|++++|+..|+++++..+..
T Consensus 223 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 302 (411)
T 4a1s_A 223 GRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVE 302 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 5689999999999999999999999999987643 2388999999999999999999999999987643
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHH
Q 045024 194 IFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLASGLLGLAKQCINLGAFRWGASLLEDACKVAEAN 268 (1173)
Q Consensus 194 ~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~l~~~~~a~g~~~~A~~~l~~Al~~~~~~ 268 (1173)
..++..+|.++...|++++|+.+|+++++..+.... ....+.++..++..+...|++++|...++++++..+..
T Consensus 303 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 376 (411)
T 4a1s_A 303 AQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGD-RIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAXXX 376 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCC-hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhc
Confidence 678899999999999999999999999987654321 23445667777777888888999999999988876554
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.80 E-value=8.2e-19 Score=198.98 Aligned_cols=261 Identities=20% Similarity=0.198 Sum_probs=220.2
Q ss_pred HHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHccCcHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHccCC
Q 045024 4 KGALLLQLEDSLEANPDD----PSLHLDLGLHLWENSESKEKAAEHFVIAAKL------NPQNAVAFRYLGHYYTRFSID 73 (1173)
Q Consensus 4 ~~aAi~~l~~al~~~P~~----~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~------~p~~~~a~~~lg~~~~~~~g~ 73 (1173)
...|+..|+++++.+|++ ..++..+|.++...|+ +++|+..+++++.. .|..+.++..+|.++.. .|+
T Consensus 21 ~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~-~g~ 98 (338)
T 3ro2_A 21 CRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHD-YAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKV-LGN 98 (338)
T ss_dssp HHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH-TTC
T ss_pred HHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHH-ccC
Confidence 345699999999999998 4688899999999987 99999999999876 44557789999999999 999
Q ss_pred HHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHCCC--------------------HHHHHHHHHHHHhh------
Q 045024 74 TQRAIKCYQRAVSLSPDD------SVSGEALCELLEHGGK--------------------ESLEVVVCREASDK------ 121 (1173)
Q Consensus 74 ~~eA~~~~~~al~~~p~~------~~a~~~La~~~~~~g~--------------------~~~A~~~~~~al~~------ 121 (1173)
+++|+..++++++..|.. ..++..+|.++...|+ +++|+..+++++..
T Consensus 99 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~ 178 (338)
T 3ro2_A 99 FDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGD 178 (338)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 999999999999876543 3378999999999999 99999999998776
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--
Q 045024 122 SPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTS------PHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTS-- 193 (1173)
Q Consensus 122 ~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-- 193 (1173)
.+....++..+|.++...|++++|+..++++++..+.. ..++..+|.++...|++++|+..++++++..+..
T Consensus 179 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 258 (338)
T 3ro2_A 179 RAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKD 258 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcc
Confidence 23346688999999999999999999999999875532 3488999999999999999999999999886654
Q ss_pred ----hHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHH
Q 045024 194 ----IFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLASGLLGLAKQCINLGAFRWGASLLEDACKVAEA 267 (1173)
Q Consensus 194 ----~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~l~~~~~a~g~~~~A~~~l~~Al~~~~~ 267 (1173)
..++..+|.++...|++++|+..++++++..+.... ....+.++..++..+...|++++|...++++++..+.
T Consensus 259 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 259 RAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKD-RIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 335 (338)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC---
T ss_pred hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCC-cHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 678889999999999999999999999987654322 2344566777777788888899999999998887654
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=2e-18 Score=215.88 Aligned_cols=174 Identities=18% Similarity=0.220 Sum_probs=142.4
Q ss_pred hCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHH
Q 045024 52 LNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRR 131 (1173)
Q Consensus 52 ~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~ 131 (1173)
..|++++++..+|.++.. +|++++|+..|+++++++|++..++..+|.++..+|++++|+..|+++++++|+++.++..
T Consensus 4 s~P~~a~al~nLG~~~~~-~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~n 82 (723)
T 4gyw_A 4 SCPTHADSLNNLANIKRE-QGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSN 82 (723)
T ss_dssp --CHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 357777888888888888 8888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChH
Q 045024 132 LGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFR 211 (1173)
Q Consensus 132 la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~ 211 (1173)
+|.++..+|++++|++.|+++++++|+++.++.++|.+|..+|++++|+..|+++++++|++..++.++|.++..+|+++
T Consensus 83 Lg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 83 MGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHH
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHhhcCC
Q 045024 212 KGVEQFQLALKISSE 226 (1173)
Q Consensus 212 ~A~~~~~~al~~~p~ 226 (1173)
+|.+.|++++++.|+
T Consensus 163 ~A~~~~~kal~l~~~ 177 (723)
T 4gyw_A 163 DYDERMKKLVSIVAD 177 (723)
T ss_dssp THHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhChh
Confidence 888888888776543
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.78 E-value=7.8e-17 Score=178.62 Aligned_cols=231 Identities=17% Similarity=0.206 Sum_probs=201.6
Q ss_pred CCCCHHHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---ccCCHHHHHHHHHHHHhhCCCCHHH
Q 045024 18 NPDDPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTR---FSIDTQRAIKCYQRAVSLSPDDSVS 94 (1173)
Q Consensus 18 ~P~~~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~---~~g~~~eA~~~~~~al~~~p~~~~a 94 (1173)
+|+++.+++.+|.++...++ +++|+.+|+++++ |+++.+++.+|.++.. ..+++++|+.+|+++++.+ ++.+
T Consensus 2 ~~~~~~a~~~lg~~~~~~~~-~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a 76 (273)
T 1ouv_A 2 AEQDPKELVGLGAKSYKEKD-FTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNG 76 (273)
T ss_dssp ---CHHHHHHHHHHHHHTTC-HHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHH
T ss_pred CCCChHHHHHHHHHHHhCCC-HHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHH
Confidence 68899999999999999987 9999999999998 8889999999999885 2589999999999999885 8899
Q ss_pred HHHHHHHHHH----CCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 045024 95 GEALCELLEH----GGKESLEVVVCREASDKSPRAFWAFRRLGYLQLH----HKKWSEAVQSLQHAIRGYPTSPHLWEAL 166 (1173)
Q Consensus 95 ~~~La~~~~~----~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~----~g~~~~A~~~l~~al~~~p~~~~~~~~l 166 (1173)
+..+|.++.. .+++++|+..|+++++. +++.++..+|.++.. .+++++|+..|+++++.+ ++.++..+
T Consensus 77 ~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~l 152 (273)
T 1ouv_A 77 CHLLGNLYYSGQGVSQNTNKALQYYSKACDL--KYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--DGDGCTIL 152 (273)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHH
T ss_pred HHHHHHHHhCCCCcccCHHHHHHHHHHHHHc--CCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--cHHHHHHH
Confidence 9999999999 99999999999999987 488999999999999 999999999999999976 68899999
Q ss_pred HHHHHH----cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH----cCChHHHHHHHHHHHhhcCCCHHHHHHHHHHH
Q 045024 167 GLAYHR----LGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLM----LGNFRKGVEQFQLALKISSENVSAHYGLASGL 238 (1173)
Q Consensus 167 a~~~~~----~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~ 238 (1173)
|.+|.. .+++++|+..|+++++. +++.+++.+|.+|.. .+++++|+..|+++++..| +.+++.++.++
T Consensus 153 g~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~ 228 (273)
T 1ouv_A 153 GSLYDAGRGTPKDLKKALASYDKACDL--KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQ 228 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHH
Confidence 999999 99999999999999987 468899999999999 9999999999999999865 66777777766
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHHHHH
Q 045024 239 LGLAKQCINLGAFRWGASLLEDACKV 264 (1173)
Q Consensus 239 ~~l~~~~~a~g~~~~A~~~l~~Al~~ 264 (1173)
..- ....+++++|..++++|++.
T Consensus 229 ~~g---~~~~~~~~~A~~~~~~a~~~ 251 (273)
T 1ouv_A 229 YNG---EGVTRNEKQAIENFKKGCKL 251 (273)
T ss_dssp HTT---SSSSCCSTTHHHHHHHHHHH
T ss_pred HcC---CCcccCHHHHHHHHHHHHHc
Confidence 640 00145577777777777664
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=2.8e-18 Score=214.59 Aligned_cols=174 Identities=16% Similarity=0.136 Sum_probs=168.8
Q ss_pred hCCCCHHHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHH
Q 045024 17 ANPDDPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGE 96 (1173)
Q Consensus 17 ~~P~~~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~ 96 (1173)
..|++++++.++|.++..+|+ +++|+..|+++++++|+++.+++.+|.+|.. .|++++|+..|+++++++|++..++.
T Consensus 4 s~P~~a~al~nLG~~~~~~G~-~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~-~g~~~eA~~~~~~Al~l~P~~~~a~~ 81 (723)
T 4gyw_A 4 SCPTHADSLNNLANIKREQGN-IEEAVRLYRKALEVFPEFAAAHSNLASVLQQ-QGKLQEALMHYKEAIRISPTFADAYS 81 (723)
T ss_dssp --CHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 479999999999999999998 9999999999999999999999999999999 99999999999999999999999999
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Q 045024 97 ALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMF 176 (1173)
Q Consensus 97 ~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~ 176 (1173)
.+|.++..+|++++|++.|+++++++|+++.++..+|.++..+|++++|+..|+++++++|+++.++.++|.++...|++
T Consensus 82 nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~ 161 (723)
T 4gyw_A 82 NMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDW 161 (723)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCC
Q 045024 177 SAAIKSYGRAIELDDT 192 (1173)
Q Consensus 177 ~~A~~~~~~al~~~p~ 192 (1173)
++|++.+++++++.|+
T Consensus 162 ~~A~~~~~kal~l~~~ 177 (723)
T 4gyw_A 162 TDYDERMKKLVSIVAD 177 (723)
T ss_dssp TTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhChh
Confidence 9999999999987654
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.77 E-value=1.3e-16 Score=176.88 Aligned_cols=177 Identities=16% Similarity=0.137 Sum_probs=160.6
Q ss_pred CCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHhhCCCcHHH
Q 045024 53 NPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEH----GGKESLEVVVCREASDKSPRAFWA 128 (1173)
Q Consensus 53 ~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~----~g~~~~A~~~~~~al~~~p~~~~a 128 (1173)
+|.++.+++.+|.++.. .|++++|+.+|+++++ |+++.+++.+|.++.. .+++++|+..|+++++.. ++.+
T Consensus 2 ~~~~~~a~~~lg~~~~~-~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a 76 (273)
T 1ouv_A 2 AEQDPKELVGLGAKSYK-EKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNG 76 (273)
T ss_dssp ---CHHHHHHHHHHHHH-TTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHH
T ss_pred CCCChHHHHHHHHHHHh-CCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHH
Confidence 57889999999999999 9999999999999998 7889999999999999 999999999999999875 7899
Q ss_pred HHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCChHHHHHH
Q 045024 129 FRRLGYLQLH----HKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHR----LGMFSAAIKSYGRAIELDDTSIFPLLES 200 (1173)
Q Consensus 129 ~~~la~~~~~----~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~a~~~l 200 (1173)
+..+|.++.. .+++++|+..|+++++. +++.++..+|.+|.. .|++++|+..|+++++.+ ++.++..+
T Consensus 77 ~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~l 152 (273)
T 1ouv_A 77 CHLLGNLYYSGQGVSQNTNKALQYYSKACDL--KYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--DGDGCTIL 152 (273)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHH
T ss_pred HHHHHHHHhCCCCcccCHHHHHHHHHHHHHc--CCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--cHHHHHHH
Confidence 9999999999 99999999999999987 489999999999999 999999999999999975 68899999
Q ss_pred HHHHHH----cCChHHHHHHHHHHHhhcCCCHHHHHHHHHHHHH
Q 045024 201 GNIFLM----LGNFRKGVEQFQLALKISSENVSAHYGLASGLLG 240 (1173)
Q Consensus 201 a~~~~~----~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~ 240 (1173)
|.+|.. .+++++|+..|+++++. +++.+++.+|.++..
T Consensus 153 g~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~ 194 (273)
T 1ouv_A 153 GSLYDAGRGTPKDLKKALASYDKACDL--KDSPGCFNAGNMYHH 194 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHc
Confidence 999999 99999999999999987 356666666666655
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.2e-16 Score=171.97 Aligned_cols=153 Identities=16% Similarity=0.120 Sum_probs=103.4
Q ss_pred CCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHH
Q 045024 54 PQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSP-DDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRL 132 (1173)
Q Consensus 54 p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p-~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l 132 (1173)
+.++..++.+|.++.. .|++++|+..|+++++.+| .+..+++.+|.++...|++++|+..++++++.+|+++.++..+
T Consensus 4 ~~~~~~~~~~g~~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 82 (228)
T 4i17_A 4 TTDPNQLKNEGNDALN-AKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGK 82 (228)
T ss_dssp CCCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHH-ccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHH
Confidence 4456777777777777 7777777777777777776 6666666677777777777777777777777777777777777
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--ChHHHHHHHHH
Q 045024 133 GYLQLHHKKWSEAVQSLQHAIRGYPTSP-------HLWEALGLAYHRLGMFSAAIKSYGRAIELDDT--SIFPLLESGNI 203 (1173)
Q Consensus 133 a~~~~~~g~~~~A~~~l~~al~~~p~~~-------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~a~~~la~~ 203 (1173)
|.++...|++++|+..++++++.+|+++ .++..+|.++...|++++|+..|+++++.+|+ ++.++..+|.+
T Consensus 83 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~ 162 (228)
T 4i17_A 83 SAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVL 162 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHH
Confidence 7777777777777777777777777766 44555555555555566666666555555555 55555555555
Q ss_pred HHHc
Q 045024 204 FLML 207 (1173)
Q Consensus 204 ~~~~ 207 (1173)
+...
T Consensus 163 ~~~~ 166 (228)
T 4i17_A 163 FYNN 166 (228)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5443
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.77 E-value=9.6e-15 Score=180.48 Aligned_cols=189 Identities=9% Similarity=-0.075 Sum_probs=150.3
Q ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----------CCC-----------ChhHHHHhHHHH
Q 045024 405 HALIRGLQLDVSLADAWAHIGKLYGEVGEKKLARQAFDSARSI-----------DPS-----------LALPWAGMSADV 462 (1173)
Q Consensus 405 ~a~~kal~l~p~~~~a~~~Lg~~y~~~g~~e~A~~~f~~al~~-----------~P~-----------~~~a~~~l~a~~ 462 (1173)
..|++++...|.+...|..++.+....|+++.|...|++++.. .|. ....|+. .+..
T Consensus 365 ~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~-y~~~ 443 (679)
T 4e6h_A 365 KYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCV-YMNT 443 (679)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHH-HHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHH-HHHH
Confidence 6788888889999999999999999999999999999999875 253 2346777 4556
Q ss_pred HHhcCCHHHHHHHHHHHHhcCC--chHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Q 045024 463 QASESLVDDAFESCLRAVQILP--LAEFQIGLAKLAKLSGHLSSSQVFGAIQQAIQRGPHYPESHNLYGLVCEARSDYQA 540 (1173)
Q Consensus 463 ~~~~g~~~eA~~~~~~al~~~p--~~~~~~~la~l~~~~g~~~~~~A~~~l~~al~~~P~~~~a~~~lg~i~~~~g~~~~ 540 (1173)
..+.|+.+.|..+|.++++..| ....+...+.+....+. +.+.|...|+.+++..|+++..+...+......|+.+.
T Consensus 444 erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~-d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~ 522 (679)
T 4e6h_A 444 MKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISK-DTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQ 522 (679)
T ss_dssp HHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTS-CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHH
Confidence 6678899999999999998723 34566666666555432 25789999999999999999999889998889999999
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHH
Q 045024 541 AVVSYRLARYAISSSSGTVPNSHFQDISINLARSLSRAGNALDAVRECESLERQGMLDAEV 601 (1173)
Q Consensus 541 A~~~~~kAl~l~~~~pe~~~~~~~~~~~~~La~~~~~~g~~~eAi~~~~~~~~~~p~~~~~ 601 (1173)
|..+|++++. ..|+ ......++......-...|+.+.+.++.+++.+..|+++..
T Consensus 523 AR~lferal~---~~~~---~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~~~ 577 (679)
T 4e6h_A 523 VKSLFESSID---KISD---SHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVNKL 577 (679)
T ss_dssp HHHHHHHHTT---TSSS---TTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCCHH
T ss_pred HHHHHHHHHH---hcCC---HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcHH
Confidence 9999999853 3221 12345678888888888999999999999999999987543
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.3e-16 Score=178.28 Aligned_cols=233 Identities=14% Similarity=0.053 Sum_probs=213.7
Q ss_pred hHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-CcHHHHHHHHHHHHHhCCCCHHHHHHHHHHH----HHcc---CCH
Q 045024 3 EKGALLLQLEDSLEANPDDPSLHLDLGLHLWENS-ESKEKAAEHFVIAAKLNPQNAVAFRYLGHYY----TRFS---IDT 74 (1173)
Q Consensus 3 ~~~aAi~~l~~al~~~P~~~~~~~~lg~~~~~~~-~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~----~~~~---g~~ 74 (1173)
+...|+..+.++|.++|++..+|+.+|.++...+ .++++++..+++++..+|++..+|..++.++ .. . +++
T Consensus 48 ~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~-l~~~~~~ 126 (306)
T 3dra_A 48 YSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMEL-NNNDFDP 126 (306)
T ss_dssp CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHH-TTTCCCT
T ss_pred CCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHh-ccccCCH
Confidence 4455799999999999999999999999999888 3599999999999999999999999999999 77 6 789
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHH--HHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCC------HHHHH
Q 045024 75 QRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKES--LEVVVCREASDKSPRAFWAFRRLGYLQLHHKK------WSEAV 146 (1173)
Q Consensus 75 ~eA~~~~~~al~~~p~~~~a~~~La~~~~~~g~~~--~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~------~~~A~ 146 (1173)
++++..++++++.+|++..+|...+.+....|.++ ++++.++++++.+|.+..+|...+.+....++ +++++
T Consensus 127 ~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl 206 (306)
T 3dra_A 127 YREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATDNTIDEEL 206 (306)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccchhhhHHHHH
Confidence 99999999999999999999999999999999998 99999999999999999999999999999887 99999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH-HHHHHHHHHHhC---CCChHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 045024 147 QSLQHAIRGYPTSPHLWEALGLAYHRLGMFSA-AIKSYGRAIELD---DTSIFPLLESGNIFLMLGNFRKGVEQFQLALK 222 (1173)
Q Consensus 147 ~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~-A~~~~~~al~~~---p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~ 222 (1173)
+.+++++..+|.+..+|..++.++...|+..+ ....++++++.+ |.++.++..++.++.+.|+.++|++.|+.+.+
T Consensus 207 ~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 207 NYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp HHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 99999999999999999999999999998655 445677777666 78899999999999999999999999999997
Q ss_pred -hcCCCHHHHHHHHH
Q 045024 223 -ISSENVSAHYGLAS 236 (1173)
Q Consensus 223 -~~p~~~~a~~~la~ 236 (1173)
.+|-....|...+.
T Consensus 287 ~~Dpir~~yW~~~~~ 301 (306)
T 3dra_A 287 KYNPIRSNFWDYQIS 301 (306)
T ss_dssp TTCGGGHHHHHHHHH
T ss_pred ccChHHHHHHHHHHh
Confidence 79988887765543
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.75 E-value=2.9e-17 Score=180.94 Aligned_cols=211 Identities=14% Similarity=0.116 Sum_probs=154.8
Q ss_pred HHhCCCCHHHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCC
Q 045024 15 LEANPDDPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQN---AVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDD 91 (1173)
Q Consensus 15 l~~~P~~~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~---~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~ 91 (1173)
...+|+++..++.+|..++..|+ +++|+..|+++++.+|++ +.+++.+|.++.. .|++++|+..|+++++.+|++
T Consensus 8 ~~~~~~~~~~~~~~a~~~~~~g~-~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~-~~~~~~A~~~~~~~l~~~p~~ 85 (261)
T 3qky_A 8 GRLRHSSPQEAFERAMEFYNQGK-YDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQ-NKEYLLAASEYERFIQIYQID 85 (261)
T ss_dssp ---CCSSHHHHHHHHHHHHHTTC-HHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTC
T ss_pred CCCCCCCHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHH-hCcHHHHHHHHHHHHHHCCCC
Confidence 45678888888888888888887 888888888888888888 7888888888888 888888888888888887754
Q ss_pred ---HHHHHHHHHHHHH--------CCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 045024 92 ---SVSGEALCELLEH--------GGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSP 160 (1173)
Q Consensus 92 ---~~a~~~La~~~~~--------~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~ 160 (1173)
+.+++.+|.++.. .|++++|+..|+++++..|+++.+...+..+....++ ..
T Consensus 86 ~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~-----------------~~ 148 (261)
T 3qky_A 86 PRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAK-----------------LA 148 (261)
T ss_dssp TTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHH-----------------HH
T ss_pred chhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHH-----------------HH
Confidence 4568888888888 8888888888888888888775554333222111111 12
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---ChHHHHHHHHHHHHc----------CChHHHHHHHHHHHhhcCCC
Q 045024 161 HLWEALGLAYHRLGMFSAAIKSYGRAIELDDT---SIFPLLESGNIFLML----------GNFRKGVEQFQLALKISSEN 227 (1173)
Q Consensus 161 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~a~~~la~~~~~~----------g~~~~A~~~~~~al~~~p~~ 227 (1173)
..++.+|.+|...|++++|+..|+++++..|+ ...+++.+|.+|..+ |++++|+..|+++++..|++
T Consensus 149 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 228 (261)
T 3qky_A 149 RKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDS 228 (261)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCC
Confidence 23577788888888888888888888888777 346777888888766 77788888888888888877
Q ss_pred HH---HHHHHHHHHHHHHHH
Q 045024 228 VS---AHYGLASGLLGLAKQ 244 (1173)
Q Consensus 228 ~~---a~~~la~~~~~l~~~ 244 (1173)
+. +...++.++..+++.
T Consensus 229 ~~~~~a~~~l~~~~~~~~~~ 248 (261)
T 3qky_A 229 PLLRTAEELYTRARQRLTEL 248 (261)
T ss_dssp THHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHh
Confidence 43 445556666665554
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.1e-16 Score=176.15 Aligned_cols=189 Identities=8% Similarity=0.006 Sum_probs=151.5
Q ss_pred HhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCC---
Q 045024 51 KLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDD---SVSGEALCELLEHGGKESLEVVVCREASDKSPR--- 124 (1173)
Q Consensus 51 ~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~---~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~--- 124 (1173)
..+|.++..++.+|..+.. .|++++|+..|+++++.+|++ ..+++.+|.++...|++++|+..|+++++..|+
T Consensus 9 ~~~~~~~~~~~~~a~~~~~-~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~ 87 (261)
T 3qky_A 9 RLRHSSPQEAFERAMEFYN-QGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPR 87 (261)
T ss_dssp --CCSSHHHHHHHHHHHHH-TTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTT
T ss_pred CCCCCCHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCch
Confidence 4577888888888888888 888888888888888888888 778888888888888888888888888888774
Q ss_pred cHHHHHHHHHHHHH--------cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHH
Q 045024 125 AFWAFRRLGYLQLH--------HKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFP 196 (1173)
Q Consensus 125 ~~~a~~~la~~~~~--------~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a 196 (1173)
.+.+++.+|.++.. .|++++|+..|+++++.+|+++.+...+..+....++ ....
T Consensus 88 ~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~-----------------~~~~ 150 (261)
T 3qky_A 88 VPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAK-----------------LARK 150 (261)
T ss_dssp HHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHH-----------------HHHH
T ss_pred hHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHH-----------------HHHH
Confidence 36778888888888 8888888888888888888776555444333222111 1233
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhhcCCC---HHHHHHHHHHHHHH----------HHHHHHhhcHHHHHHH
Q 045024 197 LLESGNIFLMLGNFRKGVEQFQLALKISSEN---VSAHYGLASGLLGL----------AKQCINLGAFRWGASL 257 (1173)
Q Consensus 197 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~la~~~~~l----------~~~~~a~g~~~~A~~~ 257 (1173)
++.+|.+|...|++++|+..|+++++..|++ +.+++.+|.++..+ |+...+...+.+++..
T Consensus 151 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 151 QYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 6899999999999999999999999999984 56899999999987 7778888888887765
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.1e-17 Score=188.22 Aligned_cols=241 Identities=17% Similarity=0.120 Sum_probs=188.4
Q ss_pred hCCCCHHHHHHHHHHHHHccCcHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhh-
Q 045024 17 ANPDDPSLHLDLGLHLWENSESKEKAAEHFVIAAKL--------NPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSL- 87 (1173)
Q Consensus 17 ~~P~~~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~--------~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~- 87 (1173)
.+|..+.++..+|.++...|+ +++|+..|+++++. .|..+.++..+|.++.. .|++++|+..|+++++.
T Consensus 22 ~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~ 99 (311)
T 3nf1_A 22 EIPARLRTLHNLVIQYASQGR-YEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRD-QNKYKDAANLLNDALAIR 99 (311)
T ss_dssp TSCHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHH
Confidence 356678899999999999998 99999999999984 66778899999999999 99999999999999987
Q ss_pred -------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 045024 88 -------SPDDSVSGEALCELLEHGGKESLEVVVCREASDKS--------PRAFWAFRRLGYLQLHHKKWSEAVQSLQHA 152 (1173)
Q Consensus 88 -------~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~--------p~~~~a~~~la~~~~~~g~~~~A~~~l~~a 152 (1173)
.|....++..+|.++...|++++|+..++++++.. |....++..+|.++...|++++|+..++++
T Consensus 100 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 179 (311)
T 3nf1_A 100 EKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRA 179 (311)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 35556779999999999999999999999998874 556788999999999999999999999999
Q ss_pred HHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---------CC------hHHHHHHHHHHHHcCC
Q 045024 153 IRG--------YPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDD---------TS------IFPLLESGNIFLMLGN 209 (1173)
Q Consensus 153 l~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p---------~~------~~a~~~la~~~~~~g~ 209 (1173)
+.. .|....++..+|.++...|++++|+..++++++..| .. ...+...+..+...+.
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (311)
T 3nf1_A 180 LEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTS 259 (311)
T ss_dssp HHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CC
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHH
Confidence 998 666778899999999999999999999999997532 22 2333444555666677
Q ss_pred hHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHH
Q 045024 210 FRKGVEQFQLALKISSENVSAHYGLASGLLGLAKQCINLGAFRWGASLLEDACKVAE 266 (1173)
Q Consensus 210 ~~~A~~~~~~al~~~p~~~~a~~~la~~~~~l~~~~~a~g~~~~A~~~l~~Al~~~~ 266 (1173)
+.+|...++++....|....++..+|.++... |++++|...++++++..+
T Consensus 260 ~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~-------g~~~~A~~~~~~al~l~~ 309 (311)
T 3nf1_A 260 FGEYGGWYKACKVDSPTVTTTLKNLGALYRRQ-------GKFEAAETLEEAAMRSRK 309 (311)
T ss_dssp SCCCC---------CHHHHHHHHHHHHHHHHH-------TCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhhcCCCCchHHHHHHHHHHHHHHC-------CCHHHHHHHHHHHHHHhh
Confidence 78888888888887777666666666666554 557778777777776543
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.72 E-value=4.7e-17 Score=204.61 Aligned_cols=189 Identities=11% Similarity=-0.143 Sum_probs=173.2
Q ss_pred HhCCCCHHHHHHHHHHHHHccCcHHHHHHHHHHHH--------HhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhh
Q 045024 16 EANPDDPSLHLDLGLHLWENSESKEKAAEHFVIAA--------KLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSL 87 (1173)
Q Consensus 16 ~~~P~~~~~~~~lg~~~~~~~~~~~~A~~~~~~al--------~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~ 87 (1173)
..+|+++.+++..| ...++ +++|+..|++++ +.+|+++.+++.+|.++.. .|++++|+..|+++++.
T Consensus 388 ~~~p~~~~a~~~~a---~~~~~-~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~-~g~~~~A~~~~~~al~~ 462 (681)
T 2pzi_A 388 LVDPTDVAASVLQA---TVLSQ-PVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLD-LGDVAKATRKLDDLAER 462 (681)
T ss_dssp CCCTTSTTHHHHHH---TTTCC-HHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHH-HTCHHHHHHHHHHHHHH
T ss_pred cCCCCCcchHHhhc---ccccC-HHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHh-cCCHHHHHHHHHHHhcc
Confidence 35788888888777 45666 999999999999 8999999999999999999 99999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 045024 88 SPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALG 167 (1173)
Q Consensus 88 ~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la 167 (1173)
+|++..+++.+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++ +..|+++++++|+++.+++++|
T Consensus 463 ~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg 541 (681)
T 2pzi_A 463 VGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLA 541 (681)
T ss_dssp HCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999 9999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCh
Q 045024 168 LAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNF 210 (1173)
Q Consensus 168 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~ 210 (1173)
.++...|++++|+..|+++++++|++..+++.+|.++...|+.
T Consensus 542 ~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~~ 584 (681)
T 2pzi_A 542 RARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGRST 584 (681)
T ss_dssp HHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC-----
T ss_pred HHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHccCCC
Confidence 9999999999999999999999999999999999999887663
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.72 E-value=7.8e-17 Score=202.67 Aligned_cols=207 Identities=13% Similarity=0.025 Sum_probs=184.3
Q ss_pred HhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHH--------hhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC
Q 045024 51 KLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAV--------SLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKS 122 (1173)
Q Consensus 51 ~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al--------~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~ 122 (1173)
..+|+++.+++..| .. .|++++|+..|++++ +.+|++..+++.+|.++...|++++|+..|+++++.+
T Consensus 388 ~~~p~~~~a~~~~a---~~-~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~ 463 (681)
T 2pzi_A 388 LVDPTDVAASVLQA---TV-LSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERV 463 (681)
T ss_dssp CCCTTSTTHHHHHH---TT-TCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred cCCCCCcchHHhhc---cc-ccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC
Confidence 35788888888777 67 899999999999999 9999999999999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHH
Q 045024 123 PRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGN 202 (1173)
Q Consensus 123 p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~ 202 (1173)
|++..+++.+|.++...|++++|+..|+++++++|+++.++..+|.++...|++++ +..|+++++++|++..+++++|.
T Consensus 464 p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~ 542 (681)
T 2pzi_A 464 GWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLAR 542 (681)
T ss_dssp CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999 99999999999999999999999
Q ss_pred HHHHcCChHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhhcHHHH-HHHHHHHHHHHHHHh
Q 045024 203 IFLMLGNFRKGVEQFQLALKISSENVSAHYGLASGLLGLAKQCINLGAFRWG-ASLLEDACKVAEANT 269 (1173)
Q Consensus 203 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~l~~~~~a~g~~~~A-~~~l~~Al~~~~~~~ 269 (1173)
++..+|++++|+..|+++++.+|++..+++.++.++...+. .+++ ...+++|.+.+....
T Consensus 543 ~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~-------~~~~~~~~~~~A~~~l~~~~ 603 (681)
T 2pzi_A 543 ARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGRS-------TSEVTEEQIRDAARRVEALP 603 (681)
T ss_dssp HHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC--------------CCHHHHHHHHHHHHTSC
T ss_pred HHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHccCC-------CCCCCHHHHHHHHHHHhhCC
Confidence 99999999999999999999999999999999998866443 1222 233555555555443
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.71 E-value=3.5e-16 Score=160.80 Aligned_cols=172 Identities=17% Similarity=0.145 Sum_probs=125.9
Q ss_pred HHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q 045024 57 AVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQ 136 (1173)
Q Consensus 57 ~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~ 136 (1173)
...+..+|.++.. .|++++|+..|+++++.+|.+..++..+|.++...|++++|+..++++++..|.++.++..+|.++
T Consensus 8 ~~~~~~~~~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 8 QVYYRDKGISHAK-AGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHH-HTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHH-hcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 4556666777777 777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHH
Q 045024 137 LHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQ 216 (1173)
Q Consensus 137 ~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~ 216 (1173)
...|++++|+..+++++..+|.++.++..+|.++...|++++|+..++++++..|.++.++..+|.++...|++++|+..
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 166 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPH 166 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHH
Confidence 77777777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHhhcCCCHH
Q 045024 217 FQLALKISSENVS 229 (1173)
Q Consensus 217 ~~~al~~~p~~~~ 229 (1173)
++++++.+|++..
T Consensus 167 ~~~~~~~~~~~~~ 179 (186)
T 3as5_A 167 FKKANELDEGASV 179 (186)
T ss_dssp HHHHHHHHHCCCG
T ss_pred HHHHHHcCCCchh
Confidence 7777777666543
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.71 E-value=2.3e-13 Score=168.17 Aligned_cols=246 Identities=11% Similarity=0.037 Sum_probs=177.0
Q ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHH-HHHHHHHhhCCCChhHHHHhHHHHHHhcCCHHHHHHHHHHHHh
Q 045024 403 KQHALIRGLQLDVSLADAWAHIGKLYGEVGEKKLAR-QAFDSARSIDPSLALPWAGMSADVQASESLVDDAFESCLRAVQ 481 (1173)
Q Consensus 403 a~~a~~kal~l~p~~~~a~~~Lg~~y~~~g~~e~A~-~~f~~al~~~P~~~~a~~~l~a~~~~~~g~~~eA~~~~~~al~ 481 (1173)
....|++++...|..+++|+..+..+...|+.++|. ..|++++...|.+...|+. .+......|++++|.++|++++.
T Consensus 328 v~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~-~a~~ee~~~~~e~aR~iyek~l~ 406 (679)
T 4e6h_A 328 MTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFS-LSEQYELNTKIPEIETTILSCID 406 (679)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHH-HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHH-HHHHHHHhCCHHHHHHHHHHHHH
Confidence 346799999999999999999999999999999997 9999999999999888888 66688899999999999999886
Q ss_pred cCCchHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCC-----------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 045024 482 ILPLAEFQIGLAKLAKLSGHLSSSQVFGAIQQAIQRGP-----------HYPESHNLYGLVCEARSDYQAAVVSYRLARY 550 (1173)
Q Consensus 482 ~~p~~~~~~~la~l~~~~g~~~~~~A~~~l~~al~~~P-----------~~~~a~~~lg~i~~~~g~~~~A~~~~~kAl~ 550 (1173)
..|. .++......| +...+|...+.+..+.|+.+.|+.+|.+|++
T Consensus 407 ~l~~------------------------~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~ 462 (679)
T 4e6h_A 407 RIHL------------------------DLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRR 462 (679)
T ss_dssp HHHH------------------------HHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHH------------------------HhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4210 0000001112 2345677777777788888888888888864
Q ss_pred HhhcCCCCCCCCchHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHhhhc
Q 045024 551 AISSSSGTVPNSHFQDISINLARSLSRAGN-ALDAVRECESLERQGMLDAEVLQVYAFSLWQLGKYDLALSMARNLASSV 629 (1173)
Q Consensus 551 l~~~~pe~~~~~~~~~~~~~La~~~~~~g~-~~eAi~~~~~~~~~~p~~~~~~~~la~a~~~~g~~~eA~~~~~~aL~~~ 629 (1173)
.. |.. ...++...|.+....|+ ++.|..+|+.+++..|.++..+..++......|+.+.|...|+++++..
T Consensus 463 ~~---~~~-----~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~ 534 (679)
T 4e6h_A 463 LK---KLV-----TPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKI 534 (679)
T ss_dssp TG---GGS-----CTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTS
T ss_pred hc---CCC-----ChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhc
Confidence 31 110 01255666666666544 7888888888888888888877777887778888888888888888866
Q ss_pred cccccchhhhhHHHHHHHHHHhcChhhhhHHhhhCCCCccccchhHHHHHHhhh
Q 045024 630 SAMEQSSAAASVSFICRLLYHISGLDSTINSILKMPKGLFQCSKMSFIVSAIHA 683 (1173)
Q Consensus 630 p~~~~~~~~~~~~~la~l~~~~g~~~~A~~~l~~~p~~~~~~~~~~~~l~~l~~ 683 (1173)
|. ......+.......-...|..+.+..+..+.......+.++.........
T Consensus 535 ~~--~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~~~~~f~~ry~~ 586 (679)
T 4e6h_A 535 SD--SHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVNKLEEFTNKYKV 586 (679)
T ss_dssp SS--TTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCCHHHHHHHHTCB
T ss_pred CC--HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHhcC
Confidence 53 22445677777888888888888775555544444334466655544433
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.8e-16 Score=185.15 Aligned_cols=236 Identities=8% Similarity=-0.052 Sum_probs=170.1
Q ss_pred HHHHHHHHHHHHHccCcHHHHHHHHHHHHHhCC---CCHHHHHHH----HHHHHHccCCHHHHH-----------HHHHH
Q 045024 22 PSLHLDLGLHLWENSESKEKAAEHFVIAAKLNP---QNAVAFRYL----GHYYTRFSIDTQRAI-----------KCYQR 83 (1173)
Q Consensus 22 ~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p---~~~~a~~~l----g~~~~~~~g~~~eA~-----------~~~~~ 83 (1173)
....+.-.......++ +++|...++++.+.-+ .+....... .+.... .++++.+. ..+++
T Consensus 12 v~~~l~~w~~~i~~~~-~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~-~~~~~~~~~~~~e~~~~~~~~~~~ 89 (383)
T 3ulq_A 12 IGEKINEWYMYIRRFS-IPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLM-LEYLEPLEKMRIEEQPRLSDLLLE 89 (383)
T ss_dssp HHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHH-HHHHGGGGGSCGGGSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcC-HHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHH-HhhcCcccccccccccchhhHHHH
Confidence 3444444555666776 9999999998864322 344443222 222223 44455555 55555
Q ss_pred HHhhCCCCHHH------HHHHHHHHHHCCCHHHHHHHHHHHHhh---CCC---cHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 045024 84 AVSLSPDDSVS------GEALCELLEHGGKESLEVVVCREASDK---SPR---AFWAFRRLGYLQLHHKKWSEAVQSLQH 151 (1173)
Q Consensus 84 al~~~p~~~~a------~~~La~~~~~~g~~~~A~~~~~~al~~---~p~---~~~a~~~la~~~~~~g~~~~A~~~l~~ 151 (1173)
+-. .|..... ++.+|..+...|++++|+..++++++. .++ .+.++..+|.++...|++++|+..+++
T Consensus 90 i~~-~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~ 168 (383)
T 3ulq_A 90 IDK-KQARLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQ 168 (383)
T ss_dssp HHH-HTHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHh-cCCCchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 332 3333332 445899999999999999999999887 233 468899999999999999999999999
Q ss_pred HHHhCCC-------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------hHHHHHHHHHHHHcCChHHHHHHHH
Q 045024 152 AIRGYPT-------SPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTS------IFPLLESGNIFLMLGNFRKGVEQFQ 218 (1173)
Q Consensus 152 al~~~p~-------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~a~~~la~~~~~~g~~~~A~~~~~ 218 (1173)
++++.+. ...++..+|.+|...|++++|+..|++++++.+.. ..++.++|.+|..+|++++|+.+|+
T Consensus 169 al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~ 248 (383)
T 3ulq_A 169 AYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFK 248 (383)
T ss_dssp HHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 9987443 24588999999999999999999999999875543 2588899999999999999999999
Q ss_pred HHHhh-----c-CCCHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHH
Q 045024 219 LALKI-----S-SENVSAHYGLASGLLGLAKQCINLGAFRWGASLLEDACKVAEA 267 (1173)
Q Consensus 219 ~al~~-----~-p~~~~a~~~la~~~~~l~~~~~a~g~~~~A~~~l~~Al~~~~~ 267 (1173)
++++. + |....+ +..+|..+...|++++|...++++++..+.
T Consensus 249 ~al~~~~~~~~~~~~~~~-------~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 296 (383)
T 3ulq_A 249 RAIAVFEESNILPSLPQA-------YFLITQIHYKLGKIDKAHEYHSKGMAYSQK 296 (383)
T ss_dssp HHHHHHHHTTCGGGHHHH-------HHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhccchhHHHH-------HHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 99984 3 333334 444455555566688888888777776543
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.70 E-value=5.5e-17 Score=182.38 Aligned_cols=172 Identities=17% Similarity=0.165 Sum_probs=134.8
Q ss_pred hCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--
Q 045024 52 LNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSL--------SPDDSVSGEALCELLEHGGKESLEVVVCREASDK-- 121 (1173)
Q Consensus 52 ~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~--------~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~-- 121 (1173)
.+|..+.++..+|.++.. .|++++|+..|++++++ .|....++..+|.++...|++++|+..+++++..
T Consensus 22 ~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 100 (311)
T 3nf1_A 22 EIPARLRTLHNLVIQYAS-QGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIRE 100 (311)
T ss_dssp TSCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 356667889999999999 99999999999999985 5566677888888998999999999988888876
Q ss_pred ------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 045024 122 ------SPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGY--------PTSPHLWEALGLAYHRLGMFSAAIKSYGRAI 187 (1173)
Q Consensus 122 ------~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 187 (1173)
.|....++..+|.++...|++++|+..++++++.. |....++..+|.++...|++++|+..|++++
T Consensus 101 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 180 (311)
T 3nf1_A 101 KTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRAL 180 (311)
T ss_dssp HHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34456778888888888888888888888887763 4455667777888888888888888888877
Q ss_pred Hh--------CCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhc
Q 045024 188 EL--------DDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKIS 224 (1173)
Q Consensus 188 ~~--------~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~ 224 (1173)
+. .|....++..+|.++...|++++|+..|+++++..
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 225 (311)
T 3nf1_A 181 EIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRA 225 (311)
T ss_dssp HHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 76 44456667777777777777777777777776643
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=99.70 E-value=2.5e-15 Score=167.73 Aligned_cols=238 Identities=9% Similarity=-0.044 Sum_probs=209.3
Q ss_pred HHHHccCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccC--CHHHHHHHHHHHHhhCCCCHHHHHHHHHHH----HH
Q 045024 31 HLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSI--DTQRAIKCYQRAVSLSPDDSVSGEALCELL----EH 104 (1173)
Q Consensus 31 ~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g--~~~eA~~~~~~al~~~p~~~~a~~~La~~~----~~ 104 (1173)
.....++..++|+..+.+++.++|++..+|+.+|.++.. .| ++++++..+++++..+|++..+|...+.++ ..
T Consensus 41 a~~~~~e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~-l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~ 119 (306)
T 3dra_A 41 ALMKAEEYSERALHITELGINELASHYTIWIYRFNILKN-LPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMEL 119 (306)
T ss_dssp HHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT-CTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHH-cccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHh
Confidence 344566645899999999999999999999999999999 99 999999999999999999999999999999 77
Q ss_pred C---CCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHH--HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC----
Q 045024 105 G---GKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWS--EAVQSLQHAIRGYPTSPHLWEALGLAYHRLGM---- 175 (1173)
Q Consensus 105 ~---g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~--~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~---- 175 (1173)
. +++++++..++++++.+|++..+|...+.+....|.++ ++++.++++++.+|.|..+|...+.+....|+
T Consensus 120 l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~ 199 (306)
T 3dra_A 120 NNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATD 199 (306)
T ss_dssp TTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCCH
T ss_pred ccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccchh
Confidence 7 78999999999999999999999999999999999999 99999999999999999999999999999988
Q ss_pred --HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhhc---CCCHHHHHHHHHHHHHHHHHHHHhh
Q 045024 176 --FSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRK-GVEQFQLALKIS---SENVSAHYGLASGLLGLAKQCINLG 249 (1173)
Q Consensus 176 --~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~-A~~~~~~al~~~---p~~~~a~~~la~~~~~l~~~~~a~g 249 (1173)
++++++.+++++..+|++..+|..++.++...|+..+ ....++++++.+ |.++.++..++.++.+.|+
T Consensus 200 ~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~------ 273 (306)
T 3dra_A 200 NTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKK------ 273 (306)
T ss_dssp HHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTC------
T ss_pred hhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCC------
Confidence 9999999999999999999999999999999999665 445777777766 8888888888888876554
Q ss_pred cHHHHHHHHHHHHHHHHHHhh-hcCChHHHHHHhc
Q 045024 250 AFRWGASLLEDACKVAEANTR-LAGNMSCIWKLHG 283 (1173)
Q Consensus 250 ~~~~A~~~l~~Al~~~~~~~~-~~~~~~~~~~~~g 283 (1173)
. ++|++.+..... .+|.....|...+
T Consensus 274 -~-------~~A~~~~~~l~~~~Dpir~~yW~~~~ 300 (306)
T 3dra_A 274 -Y-------NESRTVYDLLKSKYNPIRSNFWDYQI 300 (306)
T ss_dssp -H-------HHHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred -H-------HHHHHHHHHHHhccChHHHHHHHHHH
Confidence 4 455555555554 5666666666544
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.70 E-value=4.6e-16 Score=159.93 Aligned_cols=173 Identities=18% Similarity=0.221 Sum_probs=166.8
Q ss_pred CHHHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 045024 21 DPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCE 100 (1173)
Q Consensus 21 ~~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~ 100 (1173)
....++.+|.++...|+ +++|+..|+++++.+|.++.++..+|.++.. .|++++|+..++++++.+|.+..++..+|.
T Consensus 7 ~~~~~~~~~~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~ 84 (186)
T 3as5_A 7 RQVYYRDKGISHAKAGR-YSQAVMLLEQVYDADAFDVDVALHLGIAYVK-TGAVDRGTELLERSLADAPDNVKVATVLGL 84 (186)
T ss_dssp HHHHHHHHHHHHHHHTC-HHHHHHHHTTTCCTTSCCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhcC-HHHHHHHHHHHHHhCccChHHHHHHHHHHHH-cCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 46778899999999987 9999999999999999999999999999999 999999999999999999999999999999
Q ss_pred HHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 045024 101 LLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAI 180 (1173)
Q Consensus 101 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 180 (1173)
++...|++++|+..+++++...|.++.++..+|.++...|++++|+..++++++..|.++.++..+|.++...|++++|+
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 164 (186)
T 3as5_A 85 TYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEAL 164 (186)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCChH
Q 045024 181 KSYGRAIELDDTSIF 195 (1173)
Q Consensus 181 ~~~~~al~~~p~~~~ 195 (1173)
..++++++.+|++..
T Consensus 165 ~~~~~~~~~~~~~~~ 179 (186)
T 3as5_A 165 PHFKKANELDEGASV 179 (186)
T ss_dssp HHHHHHHHHHHCCCG
T ss_pred HHHHHHHHcCCCchh
Confidence 999999999887653
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.70 E-value=2.9e-16 Score=183.48 Aligned_cols=234 Identities=11% Similarity=0.061 Sum_probs=195.0
Q ss_pred HHHHHHHHHHccCcHHHHHHHHHHHHHh---CCC---CHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCC-------
Q 045024 25 HLDLGLHLWENSESKEKAAEHFVIAAKL---NPQ---NAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDD------- 91 (1173)
Q Consensus 25 ~~~lg~~~~~~~~~~~~A~~~~~~al~~---~p~---~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~------- 91 (1173)
++.+|..+...|+ +++|+..|+++++. .++ .+.++..+|.+|.. .|++++|+.++++++++.+..
T Consensus 106 ~~~~g~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~ 183 (383)
T 3ulq_A 106 NFFRGMYELDQRE-YLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYY-MKQTYFSMDYARQAYEIYKEHEAYNIRL 183 (383)
T ss_dssp HHHHHHHHHHTTC-HHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHTCSTTHHHH
T ss_pred HHHHHHHHHHhcC-HHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhCccchHHH
Confidence 4459999999987 99999999999976 233 46899999999999 999999999999999985443
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----hC-CCC
Q 045024 92 SVSGEALCELLEHGGKESLEVVVCREASDKSPRA------FWAFRRLGYLQLHHKKWSEAVQSLQHAIR-----GY-PTS 159 (1173)
Q Consensus 92 ~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~------~~a~~~la~~~~~~g~~~~A~~~l~~al~-----~~-p~~ 159 (1173)
..++..+|.++...|++++|+..++++++..|.. ..++..+|.++...|++++|+..++++++ .+ |..
T Consensus 184 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 263 (383)
T 3ulq_A 184 LQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSL 263 (383)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhH
Confidence 3468999999999999999999999999875432 35889999999999999999999999999 46 778
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCChHHHHHHHHHHHHcCC---hHHHHHHHHHHHhhcCCCHHHH
Q 045024 160 PHLWEALGLAYHRLGMFSAAIKSYGRAIELD-----DTSIFPLLESGNIFLMLGN---FRKGVEQFQLALKISSENVSAH 231 (1173)
Q Consensus 160 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-----p~~~~a~~~la~~~~~~g~---~~~A~~~~~~al~~~p~~~~a~ 231 (1173)
+.++..+|.++...|++++|+..+++++++. |.....+..+|.++...|+ +++|+..+++. +. .
T Consensus 264 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~----~~----~ 335 (383)
T 3ulq_A 264 PQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK----ML----Y 335 (383)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT----TC----H
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC----cC----H
Confidence 8999999999999999999999999999874 3333445779999999999 77788777765 11 1
Q ss_pred HHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHH
Q 045024 232 YGLASGLLGLAKQCINLGAFRWGASLLEDACKVAEAN 268 (1173)
Q Consensus 232 ~~la~~~~~l~~~~~a~g~~~~A~~~l~~Al~~~~~~ 268 (1173)
.....++..+|..+...|++++|..+++++++.....
T Consensus 336 ~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~i 372 (383)
T 3ulq_A 336 ADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQLI 372 (383)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Confidence 2334456667777777888999999999998876543
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=9.1e-15 Score=163.97 Aligned_cols=237 Identities=12% Similarity=0.053 Sum_probs=207.2
Q ss_pred ChHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCc---------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccC
Q 045024 2 DEKGALLLQLEDSLEANPDDPSLHLDLGLHLWENSES---------KEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSI 72 (1173)
Q Consensus 2 d~~~aAi~~l~~al~~~P~~~~~~~~lg~~~~~~~~~---------~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g 72 (1173)
++...|+..+.+++..+|++..+|..++.++...+.. +++++.+++.++..+|++..+|...+.++.. .|
T Consensus 44 e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~-l~ 122 (331)
T 3dss_A 44 ELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSR-LP 122 (331)
T ss_dssp CCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-CS
T ss_pred CCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhc-cC
Confidence 3445679999999999999999999999999776542 6899999999999999999999999999999 88
Q ss_pred --CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHc----------
Q 045024 73 --DTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGK-ESLEVVVCREASDKSPRAFWAFRRLGYLQLHH---------- 139 (1173)
Q Consensus 73 --~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~~g~-~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~---------- 139 (1173)
++++++.++.++++.+|.+..+|...+.+....|. ++++++++.++++.+|.+..+|..++.++...
T Consensus 123 ~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~~~~~~ 202 (331)
T 3dss_A 123 EPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQG 202 (331)
T ss_dssp SCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC------
T ss_pred cccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhcccccccc
Confidence 49999999999999999999999999999999998 69999999999999999999999999999887
Q ss_pred ----CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 045024 140 ----KKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRL-----------GMFSAAIKSYGRAIELDDTSIFPLLESGNIF 204 (1173)
Q Consensus 140 ----g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~-----------g~~~~A~~~~~~al~~~p~~~~a~~~la~~~ 204 (1173)
+.++++++++.+++..+|++..+|+.+..++... +.++++++.++++++..|++...+..++.+.
T Consensus 203 ~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~ 282 (331)
T 3dss_A 203 RLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLM 282 (331)
T ss_dssp CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHH
Confidence 5689999999999999999999998777666665 4689999999999999999966655555443
Q ss_pred H---HcCChHHHHHHHHHHHhhcCCCHHHHHHHHHHHH
Q 045024 205 L---MLGNFRKGVEQFQLALKISSENVSAHYGLASGLL 239 (1173)
Q Consensus 205 ~---~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~ 239 (1173)
. ..|..++....+.+++++||.....+..+...+.
T Consensus 283 ~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~~~~ 320 (331)
T 3dss_A 283 RALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFL 320 (331)
T ss_dssp HHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred HhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHHHHH
Confidence 3 3578889999999999999988776665554443
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.69 E-value=5.7e-16 Score=164.44 Aligned_cols=168 Identities=10% Similarity=0.031 Sum_probs=110.5
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHH----------------HHHHHHHCCCHHHHHHHHHHHHhh
Q 045024 58 VAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEA----------------LCELLEHGGKESLEVVVCREASDK 121 (1173)
Q Consensus 58 ~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~----------------La~~~~~~g~~~~A~~~~~~al~~ 121 (1173)
+.++..|..+.. .|++++|+..|+++++.+|+++.+++. +|.++...|++++|+..|+++++.
T Consensus 5 ~~~~~~g~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 83 (208)
T 3urz_A 5 DEMLQKVSAAIE-AGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK 83 (208)
T ss_dssp HHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-CCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 344444555555 555555555555555555555554444 777777777777777777777777
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCCCChHHHHH
Q 045024 122 SPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGM--FSAAIKSYGRAIELDDTSIFPLLE 199 (1173)
Q Consensus 122 ~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~--~~~A~~~~~~al~~~p~~~~a~~~ 199 (1173)
+|+++.++..+|.++...|++++|+..|+++++++|+++.+++.+|.+|...|+ .+.+...+.+++...| ...+++.
T Consensus 84 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~a~~~ 162 (208)
T 3urz_A 84 APNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTK-MQYARYR 162 (208)
T ss_dssp CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCH-HHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCc-hhHHHHH
Confidence 777777777777777777777777777777777777777777777777766543 3445566666543222 1235667
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhhcCCC
Q 045024 200 SGNIFLMLGNFRKGVEQFQLALKISSEN 227 (1173)
Q Consensus 200 la~~~~~~g~~~~A~~~~~~al~~~p~~ 227 (1173)
+|.++...|++++|+..|+++++++|+.
T Consensus 163 ~g~~~~~~~~~~~A~~~~~~al~l~P~~ 190 (208)
T 3urz_A 163 DGLSKLFTTRYEKARNSLQKVILRFPST 190 (208)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHTTTSCCH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHhCCCH
Confidence 7777777888888888888888887763
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.69 E-value=3.3e-16 Score=166.27 Aligned_cols=170 Identities=14% Similarity=0.059 Sum_probs=153.1
Q ss_pred CHHHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCCCHHHHHH----------------HHHHHHHccCCHHHHHHHHHHH
Q 045024 21 DPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRY----------------LGHYYTRFSIDTQRAIKCYQRA 84 (1173)
Q Consensus 21 ~~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~----------------lg~~~~~~~g~~~eA~~~~~~a 84 (1173)
++..++..|..++..|+ +++|+..|+++++.+|+++.+++. +|.++.. .|++++|+..|+++
T Consensus 3 ~~~~~~~~g~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~-~g~~~~A~~~~~~a 80 (208)
T 3urz_A 3 SVDEMLQKVSAAIEAGQ-NGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKK-NRNYDKAYLFYKEL 80 (208)
T ss_dssp CHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHH-CCCHHHHHHHHHHH
Confidence 56788999999999998 999999999999999999999999 9999999 99999999999999
Q ss_pred HhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCCCCHHH
Q 045024 85 VSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKK--WSEAVQSLQHAIRGYPTSPHL 162 (1173)
Q Consensus 85 l~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~--~~~A~~~l~~al~~~p~~~~~ 162 (1173)
++++|+++.++..+|.++...|++++|+..|+++++.+|+++.+++.+|.++...|+ ...+...+++++...| ...+
T Consensus 81 l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~a 159 (208)
T 3urz_A 81 LQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTK-MQYA 159 (208)
T ss_dssp HHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCH-HHHH
T ss_pred HHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCc-hhHH
Confidence 999999999999999999999999999999999999999999999999999987764 4566777877764333 2346
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 045024 163 WEALGLAYHRLGMFSAAIKSYGRAIELDDTS 193 (1173)
Q Consensus 163 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 193 (1173)
++.+|.++...|++++|+..|+++++++|+.
T Consensus 160 ~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~ 190 (208)
T 3urz_A 160 RYRDGLSKLFTTRYEKARNSLQKVILRFPST 190 (208)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHTTTSCCH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCH
Confidence 7889999999999999999999999999974
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=5.9e-17 Score=162.34 Aligned_cols=144 Identities=18% Similarity=0.097 Sum_probs=61.6
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHH
Q 045024 64 GHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWS 143 (1173)
Q Consensus 64 g~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~ 143 (1173)
|.++.. .|++++|+..+++++..+|+++..++.+|.+|...|++++|+..|+++++.+|+++.++..+|.++...|+++
T Consensus 4 G~~~~~-~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~ 82 (150)
T 4ga2_A 4 GSMRRS-KADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTD 82 (150)
T ss_dssp ---CCC-HHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHH-cChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchH
Confidence 333334 4444444444444444444444444444444444444444444444444444444444444444444444444
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH-HHHHHHhCCCChHHHHHHHHHHHHcC
Q 045024 144 EAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKS-YGRAIELDDTSIFPLLESGNIFLMLG 208 (1173)
Q Consensus 144 ~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~-~~~al~~~p~~~~a~~~la~~~~~~g 208 (1173)
+|+..|+++++++|+++.++..+|.+|...|++++|... ++++++++|+++.++..++.++...|
T Consensus 83 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 83 KAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence 444444444444444444444444444444444433332 24444444444444444444444333
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.68 E-value=3.3e-16 Score=175.74 Aligned_cols=204 Identities=12% Similarity=0.067 Sum_probs=146.0
Q ss_pred HHHHHHHHHHHccCcHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCC------
Q 045024 24 LHLDLGLHLWENSESKEKAAEHFVIAAKLNPQ------NAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDD------ 91 (1173)
Q Consensus 24 ~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~------~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~------ 91 (1173)
.+...|.+|...|+ +++|+..|.+++++.+. .+.++..+|.+|.. .|++++|+.+|++++++.|..
T Consensus 39 ~~~~a~~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~-~g~~~~A~~~~~~Al~l~~~~g~~~~~ 116 (292)
T 1qqe_A 39 LCVQAATIYRLRKE-LNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKS-GGNSVNAVDSLENAIQIFTHRGQFRRG 116 (292)
T ss_dssp HHHHHHHHHHHTTC-THHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 34445666766766 88888888888876432 25678888888888 888888888888888876543
Q ss_pred HHHHHHHHHHHHHC-CCHHHHHHHHHHHHhhCCCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---
Q 045024 92 SVSGEALCELLEHG-GKESLEVVVCREASDKSPRA------FWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPH--- 161 (1173)
Q Consensus 92 ~~a~~~La~~~~~~-g~~~~A~~~~~~al~~~p~~------~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~--- 161 (1173)
..++..+|.+|... |++++|+..|++++++.|.+ ..++..+|.++..+|++++|+..|++++...|++..
T Consensus 117 a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 196 (292)
T 1qqe_A 117 ANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQW 196 (292)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGG
T ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccH
Confidence 34577888888885 88888888888888876643 456778888888888888888888888888776543
Q ss_pred ----HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHH-----HHHHHHHHH--HcCChHHHHHHHHHHHhhcCCCHH
Q 045024 162 ----LWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFP-----LLESGNIFL--MLGNFRKGVEQFQLALKISSENVS 229 (1173)
Q Consensus 162 ----~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a-----~~~la~~~~--~~g~~~~A~~~~~~al~~~p~~~~ 229 (1173)
++..+|.++...|++++|+..|+++++++|+.... +..++..+. ..+++++|+..|++++.++|....
T Consensus 197 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~~ 275 (292)
T 1qqe_A 197 SLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKIT 275 (292)
T ss_dssp GHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHHH
Confidence 56778888888888888888888888888775442 334455553 356788888888887777665543
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=1.1e-16 Score=160.41 Aligned_cols=146 Identities=14% Similarity=0.116 Sum_probs=133.6
Q ss_pred HHHHHHHccCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCC
Q 045024 28 LGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGK 107 (1173)
Q Consensus 28 lg~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~~g~ 107 (1173)
+|.++..+++ +++|+..+++++..+|+++..++.+|.+|.. .|++++|+..|+++++++|+++.++..+|.++...|+
T Consensus 3 LG~~~~~~~~-~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~-~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 3 LGSMRRSKAD-VERYIASVQGSTPSPRQKSIKGFYFAKLYYE-AKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEEN 80 (150)
T ss_dssp ----CCCHHH-HHHHHHHHHHHSCSHHHHHTTHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHcCh-HHHHHHHHHHhcccCcccHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCc
Confidence 6777777776 9999999999999999999999999999999 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHH-HHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 045024 108 ESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQS-LQHAIRGYPTSPHLWEALGLAYHRLGM 175 (1173)
Q Consensus 108 ~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~-l~~al~~~p~~~~~~~~la~~~~~~g~ 175 (1173)
+++|+..|+++++++|+++.++..+|.++...|++++|... ++++++++|+++.++..++.++...|+
T Consensus 81 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 81 TDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 99999999999999999999999999999999999887765 589999999999999999999988875
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.66 E-value=7.6e-16 Score=172.83 Aligned_cols=204 Identities=14% Similarity=0.072 Sum_probs=166.3
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHc--cCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 045024 7 LLLQLEDSLEANPDDPSLHLDLGLHLWEN--SESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRA 84 (1173)
Q Consensus 7 Ai~~l~~al~~~P~~~~~~~~lg~~~~~~--~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~a 84 (1173)
|.+.++++-+.-+.....+ .++.. .+++++|+..|.++ |.+|.. .|++++|+..|+++
T Consensus 4 a~~~~~~a~k~~~~~~~~~-----~~~~~~~~~~~~~A~~~~~~a--------------~~~~~~-~g~~~~A~~~~~~a 63 (292)
T 1qqe_A 4 PVELLKRAEKKGVPSSGFM-----KLFSGSDSYKFEEAADLCVQA--------------ATIYRL-RKELNLAGDSFLKA 63 (292)
T ss_dssp HHHHHHHHHHHSSCCCTHH-----HHHSCCSHHHHHHHHHHHHHH--------------HHHHHH-TTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcCCCcc-----hhcCCCCCccHHHHHHHHHHH--------------HHHHHH-cCCHHHHHHHHHHH
Confidence 4677777777766542222 12232 22489999999987 667889 99999999999999
Q ss_pred HhhCCC------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc------HHHHHHHHHHHHHc-CCHHHHHHHHHH
Q 045024 85 VSLSPD------DSVSGEALCELLEHGGKESLEVVVCREASDKSPRA------FWAFRRLGYLQLHH-KKWSEAVQSLQH 151 (1173)
Q Consensus 85 l~~~p~------~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~------~~a~~~la~~~~~~-g~~~~A~~~l~~ 151 (1173)
+++.+. ...++..+|.+|...|++++|+.+|++++++.|.. ..++..+|.+|... |++++|+..|++
T Consensus 64 l~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~ 143 (292)
T 1qqe_A 64 ADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYEL 143 (292)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHH
Confidence 998532 24579999999999999999999999999987642 56889999999996 999999999999
Q ss_pred HHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH-------HHHHHHHHHHHcCChHHHHHHHH
Q 045024 152 AIRGYPTS------PHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIF-------PLLESGNIFLMLGNFRKGVEQFQ 218 (1173)
Q Consensus 152 al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~-------a~~~la~~~~~~g~~~~A~~~~~ 218 (1173)
++++.|.+ ..++..+|.++...|++++|+..|+++++..|++.. ++..+|.++..+|++++|+..|+
T Consensus 144 Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~ 223 (292)
T 1qqe_A 144 AGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQ 223 (292)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99998754 567899999999999999999999999999987643 67899999999999999999999
Q ss_pred HHHhhcCCCHHH
Q 045024 219 LALKISSENVSA 230 (1173)
Q Consensus 219 ~al~~~p~~~~a 230 (1173)
++++++|+....
T Consensus 224 ~al~l~p~~~~~ 235 (292)
T 1qqe_A 224 EGQSEDPNFADS 235 (292)
T ss_dssp GGGCC-------
T ss_pred HHHhhCCCCCCc
Confidence 999999987654
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.65 E-value=5.2e-15 Score=159.03 Aligned_cols=190 Identities=10% Similarity=-0.017 Sum_probs=148.2
Q ss_pred CHHHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHH---H
Q 045024 21 DPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQN---AVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSV---S 94 (1173)
Q Consensus 21 ~~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~---~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~---a 94 (1173)
.+..++.+|..++..|+ +++|+..|+++++..|++ ..+++.+|.++.. .|++++|+..|+++++.+|+++. +
T Consensus 3 ~~~~~~~~a~~~~~~g~-~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~-~~~~~~A~~~~~~~l~~~P~~~~~~~a 80 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGN-WRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYK-NADLPLAQAAIDRFIRLNPTHPNIDYV 80 (225)
T ss_dssp CHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHCcCCCcHHHH
Confidence 56789999999999987 999999999999998876 4789999999999 99999999999999999998865 6
Q ss_pred HHHHHHHHHHC------------------CCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 045024 95 GEALCELLEHG------------------GKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGY 156 (1173)
Q Consensus 95 ~~~La~~~~~~------------------g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~ 156 (1173)
++.+|.++... |++++|+..|+++++..|+++.+...+..+....+
T Consensus 81 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~---------------- 144 (225)
T 2yhc_A 81 MYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKD---------------- 144 (225)
T ss_dssp HHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHH----------------
T ss_pred HHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHH----------------
Confidence 88889888763 44555555555555555554333221111100000
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh---HHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCHH
Q 045024 157 PTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSI---FPLLESGNIFLMLGNFRKGVEQFQLALKISSENVS 229 (1173)
Q Consensus 157 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 229 (1173)
........+|.+|...|++++|+..|+++++..|+++ .++..+|.++..+|++++|+..++++....|++.+
T Consensus 145 -~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~ 219 (225)
T 2yhc_A 145 -RLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLE 219 (225)
T ss_dssp -HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCC
T ss_pred -HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchh
Confidence 0011236789999999999999999999999999875 67999999999999999999999999988887653
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.65 E-value=5.6e-16 Score=177.98 Aligned_cols=178 Identities=15% Similarity=0.121 Sum_probs=53.9
Q ss_pred HccCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHH
Q 045024 34 ENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVV 113 (1173)
Q Consensus 34 ~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~~g~~~~A~~ 113 (1173)
..|+ .++|.+++++. +.+.+|..+|.++.. .|++++|++.|.++ +++..+...+..+...|++++|+.
T Consensus 15 ~~~~-ld~A~~fae~~-----~~~~vWs~La~A~l~-~g~~~eAIdsfika-----~D~~~y~~V~~~ae~~g~~EeAi~ 82 (449)
T 1b89_A 15 HIGN-LDRAYEFAERC-----NEPAVWSQLAKAQLQ-KGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVK 82 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccC-HHHHHHHHHhC-----CChHHHHHHHHHHHH-cCCHHHHHHHHHcC-----CCHHHHHHHHHHHHhCCCHHHHHH
Confidence 3444 78888888886 334688999999999 99999999999764 455678888888888999999999
Q ss_pred HHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 045024 114 VCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTS 193 (1173)
Q Consensus 114 ~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 193 (1173)
+++.+.+..++ +.+...++.+|.+.|+++++.+.++. | +..+|..+|..+...|++++|+..|.++
T Consensus 83 yl~~ark~~~~-~~i~~~Li~~Y~Klg~l~e~e~f~~~-----p-n~~a~~~IGd~~~~~g~yeeA~~~Y~~a------- 148 (449)
T 1b89_A 83 YLQMARKKARE-SYVETELIFALAKTNRLAELEEFING-----P-NNAHIQQVGDRCYDEKMYDAAKLLYNNV------- 148 (449)
T ss_dssp ---------------------------CHHHHTTTTTC-----C-----------------CTTTHHHHHHHT-------
T ss_pred HHHHHHHhCcc-chhHHHHHHHHHHhCCHHHHHHHHcC-----C-cHHHHHHHHHHHHHcCCHHHHHHHHHHh-------
Confidence 88888775433 66777888889999999988877752 4 3458889999999999999999999876
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHH
Q 045024 194 IFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLASGLLGLAK 243 (1173)
Q Consensus 194 ~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~l~~ 243 (1173)
..+..+|.++.++|++++|++.++++ .++..|.....++...|+
T Consensus 149 -~n~~~LA~~L~~Lg~yq~AVea~~KA-----~~~~~Wk~v~~aCv~~~e 192 (449)
T 1b89_A 149 -SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKE 192 (449)
T ss_dssp -TCHHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHHTTC
T ss_pred -hhHHHHHHHHHHhccHHHHHHHHHHc-----CCchhHHHHHHHHHHcCc
Confidence 46778899999999999999999988 367777777677766655
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.65 E-value=7.1e-15 Score=171.33 Aligned_cols=237 Identities=12% Similarity=0.006 Sum_probs=197.4
Q ss_pred HHHHHHHHHHHccCcHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCC------
Q 045024 24 LHLDLGLHLWENSESKEKAAEHFVIAAKLNP------QNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDD------ 91 (1173)
Q Consensus 24 ~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p------~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~------ 91 (1173)
.++.+|..++..|+ +++|+..|+++++..+ ..+.+++.+|.+|.. .|++++|+.++++++++.+..
T Consensus 103 ~~~~~g~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~-~~~~~~A~~~~~~al~~~~~~~~~~~~ 180 (378)
T 3q15_A 103 SLFFRGMYEFDQKE-YVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYH-MKQTHVSMYHILQALDIYQNHPLYSIR 180 (378)
T ss_dssp HHHHHHHHHHHTTC-HHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHTSTTCHHH
T ss_pred HHHHHHHHHHHHCC-HHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHH-cCCcHHHHHHHHHHHHHHHhCCCchhh
Confidence 57788999999987 9999999999997632 246789999999999 999999999999999875432
Q ss_pred -HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCC---C---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----hCCCC
Q 045024 92 -SVSGEALCELLEHGGKESLEVVVCREASDKSP---R---AFWAFRRLGYLQLHHKKWSEAVQSLQHAIR-----GYPTS 159 (1173)
Q Consensus 92 -~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p---~---~~~a~~~la~~~~~~g~~~~A~~~l~~al~-----~~p~~ 159 (1173)
..++..+|.++...|++++|+..++++++..+ + ...++..+|.++...|++++|+..+++++. .+|..
T Consensus 181 ~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~ 260 (378)
T 3q15_A 181 TIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLL 260 (378)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhH
Confidence 34588999999999999999999999988633 1 356789999999999999999999999999 77878
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----ChHHHHHHHHHHHHcCC---hHHHHHHHHHHHhhcCCCHHHH
Q 045024 160 PHLWEALGLAYHRLGMFSAAIKSYGRAIELDDT-----SIFPLLESGNIFLMLGN---FRKGVEQFQLALKISSENVSAH 231 (1173)
Q Consensus 160 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-----~~~a~~~la~~~~~~g~---~~~A~~~~~~al~~~p~~~~a~ 231 (1173)
+.++..+|.++...|++++|+..+++++++.+. .......++.++...|+ +.+|+..+++. .. +
T Consensus 261 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~----~~----~ 332 (378)
T 3q15_A 261 PKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK----NL----H 332 (378)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT----TC----H
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC----CC----h
Confidence 999999999999999999999999999998543 34456678888888888 78888887762 11 1
Q ss_pred HHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHhh
Q 045024 232 YGLASGLLGLAKQCINLGAFRWGASLLEDACKVAEANTR 270 (1173)
Q Consensus 232 ~~la~~~~~l~~~~~a~g~~~~A~~~l~~Al~~~~~~~~ 270 (1173)
.....++..+|..+...|++++|..+++++++.......
T Consensus 333 ~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~ 371 (378)
T 3q15_A 333 AYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQEDILK 371 (378)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhc
Confidence 233445667777788888899999999999987766543
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.65 E-value=5.8e-15 Score=158.67 Aligned_cols=172 Identities=17% Similarity=0.172 Sum_probs=144.2
Q ss_pred HHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHc--------
Q 045024 5 GALLLQLEDSLEANPDD---PSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAV---AFRYLGHYYTRF-------- 70 (1173)
Q Consensus 5 ~aAi~~l~~al~~~P~~---~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~~---a~~~lg~~~~~~-------- 70 (1173)
..|+..|+++++..|++ +.+++.+|.+++..|+ +++|+..|+++++.+|+++. +++.+|.++...
T Consensus 21 ~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~-~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~~~~~~~~ 99 (225)
T 2yhc_A 21 RQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNAD-LPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGF 99 (225)
T ss_dssp HHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHhhhhhhhhhh
Confidence 34599999999999986 4789999999999998 99999999999999999864 899999998750
Q ss_pred ---------cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCC
Q 045024 71 ---------SIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKK 141 (1173)
Q Consensus 71 ---------~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~ 141 (1173)
.|++++|+..|+++++.+|+++.+...+..+....+ ........+|.++...|+
T Consensus 100 ~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~-----------------~~~~~~~~~a~~~~~~~~ 162 (225)
T 2yhc_A 100 FGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKD-----------------RLAKYEYSVAEYYTERGA 162 (225)
T ss_dssp --------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHTC
T ss_pred hccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHcCc
Confidence 368999999999999999999876543332221111 112234678999999999
Q ss_pred HHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Q 045024 142 WSEAVQSLQHAIRGYPTSP---HLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSI 194 (1173)
Q Consensus 142 ~~~A~~~l~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 194 (1173)
+++|+..|+++++..|+++ .++..+|.++.++|++++|++.++++....|++.
T Consensus 163 ~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~ 218 (225)
T 2yhc_A 163 WVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTL 218 (225)
T ss_dssp HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCC
T ss_pred HHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCch
Confidence 9999999999999999886 6799999999999999999999999999888764
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.63 E-value=1.6e-15 Score=167.35 Aligned_cols=215 Identities=17% Similarity=0.126 Sum_probs=174.8
Q ss_pred HHHHHHHHHHh--------CCCCHHHHHHHHHHHHHccCcHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHc
Q 045024 7 LLLQLEDSLEA--------NPDDPSLHLDLGLHLWENSESKEKAAEHFVIAAKL--------NPQNAVAFRYLGHYYTRF 70 (1173)
Q Consensus 7 Ai~~l~~al~~--------~P~~~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~--------~p~~~~a~~~lg~~~~~~ 70 (1173)
|+..|+++++. +|..+.++..+|.++...|+ +++|+..|+++++. +|..+.++..+|.++..
T Consensus 20 A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~- 97 (283)
T 3edt_B 20 AVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNK-YKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGK- 97 (283)
T ss_dssp HHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHccc-HHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHH-
Confidence 46666666652 36678899999999999988 99999999999976 35567899999999999
Q ss_pred cCCHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--------CCCcHHHHHHHHH
Q 045024 71 SIDTQRAIKCYQRAVSL--------SPDDSVSGEALCELLEHGGKESLEVVVCREASDK--------SPRAFWAFRRLGY 134 (1173)
Q Consensus 71 ~g~~~eA~~~~~~al~~--------~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~la~ 134 (1173)
.|++++|+.+|+++++. +|....++..+|.++...|++++|+..++++++. .|....++..+|.
T Consensus 98 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 177 (283)
T 3edt_B 98 RGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLAS 177 (283)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 99999999999999988 4666778999999999999999999999999988 6777889999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHh---------CCCCHHHHHHHHHHHHHcCCH------HHHHHHHHHHHHhCCCChHHHHH
Q 045024 135 LQLHHKKWSEAVQSLQHAIRG---------YPTSPHLWEALGLAYHRLGMF------SAAIKSYGRAIELDDTSIFPLLE 199 (1173)
Q Consensus 135 ~~~~~g~~~~A~~~l~~al~~---------~p~~~~~~~~la~~~~~~g~~------~~A~~~~~~al~~~p~~~~a~~~ 199 (1173)
++...|++++|+..++++++. .+.....+..++..+...+.. ..+...++......|....++..
T Consensus 178 ~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (283)
T 3edt_B 178 CYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRS 257 (283)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 999999999999999999986 445566777777777665443 33333443333334556778999
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhh
Q 045024 200 SGNIFLMLGNFRKGVEQFQLALKI 223 (1173)
Q Consensus 200 la~~~~~~g~~~~A~~~~~~al~~ 223 (1173)
+|.+|...|++++|+..|+++++.
T Consensus 258 la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 258 LGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh
Confidence 999999999999999999999875
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.62 E-value=7.8e-14 Score=161.89 Aligned_cols=241 Identities=16% Similarity=0.049 Sum_probs=192.8
Q ss_pred HHHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCH----
Q 045024 22 PSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNA-----VAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDS---- 92 (1173)
Q Consensus 22 ~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~-----~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~---- 92 (1173)
..++..+|.++...|+ +++|+..+++++...|... .++..+|.++.. .|++++|...++++++..|...
T Consensus 14 ~~~~~~~a~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~ 91 (373)
T 1hz4_A 14 AEFNALRAQVAINDGN-PDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHC-KGELTRSLALMQQTEQMARQHDVWHY 91 (373)
T ss_dssp HHHHHHHHHHHHHTTC-HHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHCCC-HHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHh-cCcHHHHHHHHHHHHHHHHhcCcHHH
Confidence 4567788999988887 9999999999998877553 267889999999 9999999999999998765432
Q ss_pred --HHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----
Q 045024 93 --VSGEALCELLEHGGKESLEVVVCREASDKS--------PRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPT---- 158 (1173)
Q Consensus 93 --~a~~~La~~~~~~g~~~~A~~~~~~al~~~--------p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~---- 158 (1173)
.++..+|.++...|++++|+..++++++.. |....++..+|.++...|++++|...+++++...+.
T Consensus 92 ~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 171 (373)
T 1hz4_A 92 ALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQ 171 (373)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGG
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcH
Confidence 236789999999999999999999998764 334567888999999999999999999999998774
Q ss_pred -CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--ChHHHH-----HHHHHHHHcCChHHHHHHHHHHHhhcCCCHHH
Q 045024 159 -SPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDT--SIFPLL-----ESGNIFLMLGNFRKGVEQFQLALKISSENVSA 230 (1173)
Q Consensus 159 -~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~a~~-----~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a 230 (1173)
...++..+|.++...|++++|...+++++...+. ....+. ..+.++...|++++|...+++++...|.....
T Consensus 172 ~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 251 (373)
T 1hz4_A 172 QQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHF 251 (373)
T ss_dssp GGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGG
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchh
Confidence 2467889999999999999999999999887432 221221 34556889999999999999998876653211
Q ss_pred HHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHH
Q 045024 231 HYGLASGLLGLAKQCINLGAFRWGASLLEDACKVAEA 267 (1173)
Q Consensus 231 ~~~la~~~~~l~~~~~a~g~~~~A~~~l~~Al~~~~~ 267 (1173)
. ...+...+..+...|++++|...+++++...+.
T Consensus 252 ~---~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~ 285 (373)
T 1hz4_A 252 L---QGQWRNIARAQILLGEFEPAEIVLEELNENARS 285 (373)
T ss_dssp G---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred h---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Confidence 1 112345566666778899999999988887665
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.62 E-value=6.5e-14 Score=162.57 Aligned_cols=260 Identities=14% Similarity=-0.002 Sum_probs=208.0
Q ss_pred HHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHccCC
Q 045024 5 GALLLQLEDSLEANPDDP-----SLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQN------AVAFRYLGHYYTRFSID 73 (1173)
Q Consensus 5 ~aAi~~l~~al~~~P~~~-----~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~------~~a~~~lg~~~~~~~g~ 73 (1173)
..|+..+++++...|.+. .++..+|.++...|+ +++|...+++++...|.. ..++..+|.++.. .|+
T Consensus 31 ~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~-~G~ 108 (373)
T 1hz4_A 31 DEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGE-LTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFA-QGF 108 (373)
T ss_dssp HHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-TTC
T ss_pred HHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCc-HHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH-CCC
Confidence 346999999999887653 267889999999987 999999999999765543 2347889999999 999
Q ss_pred HHHHHHHHHHHHhhC--------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCC-----cHHHHHHHHHHHHHcC
Q 045024 74 TQRAIKCYQRAVSLS--------PDDSVSGEALCELLEHGGKESLEVVVCREASDKSPR-----AFWAFRRLGYLQLHHK 140 (1173)
Q Consensus 74 ~~eA~~~~~~al~~~--------p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~-----~~~a~~~la~~~~~~g 140 (1173)
+++|+..++++++.. |....++..+|.++...|++++|...+++++...+. ...++..+|.++...|
T Consensus 109 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g 188 (373)
T 1hz4_A 109 LQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARG 188 (373)
T ss_dssp HHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcC
Confidence 999999999999865 233456788999999999999999999999998775 3567889999999999
Q ss_pred CHHHHHHHHHHHHHhCC--CC-HHHHH----HHHHHHHHcCCHHHHHHHHHHHHHhCCCC----hHHHHHHHHHHHHcCC
Q 045024 141 KWSEAVQSLQHAIRGYP--TS-PHLWE----ALGLAYHRLGMFSAAIKSYGRAIELDDTS----IFPLLESGNIFLMLGN 209 (1173)
Q Consensus 141 ~~~~A~~~l~~al~~~p--~~-~~~~~----~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~a~~~la~~~~~~g~ 209 (1173)
++++|...+++++...+ .. ..... .++.++...|++++|...+++++...|.. ...+..++.++...|+
T Consensus 189 ~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~ 268 (373)
T 1hz4_A 189 DLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGE 268 (373)
T ss_dssp CHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCC
Confidence 99999999999987633 22 11111 34566889999999999999998877653 2356789999999999
Q ss_pred hHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHH
Q 045024 210 FRKGVEQFQLALKISSENVSAHYGLASGLLGLAKQCINLGAFRWGASLLEDACKVAEA 267 (1173)
Q Consensus 210 ~~~A~~~~~~al~~~p~~~~a~~~la~~~~~l~~~~~a~g~~~~A~~~l~~Al~~~~~ 267 (1173)
+++|...+++++...+.... ......++...+..+...|++++|...+++++.....
T Consensus 269 ~~~A~~~l~~a~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~~ 325 (373)
T 1hz4_A 269 FEPAEIVLEELNENARSLRL-MSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANR 325 (373)
T ss_dssp HHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCcc-hhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcc
Confidence 99999999999887554321 1223345566666777788899999999999887664
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.62 E-value=2.6e-15 Score=154.65 Aligned_cols=164 Identities=12% Similarity=0.004 Sum_probs=110.6
Q ss_pred HHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q 045024 57 AVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQ 136 (1173)
Q Consensus 57 ~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~ 136 (1173)
.+.++.+|..+.. .|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+++++...| ++.....++.+.
T Consensus 6 ~~~~~~~a~~~~~-~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~ 83 (176)
T 2r5s_A 6 DEQLLKQVSELLQ-QGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAKLE 83 (176)
T ss_dssp CTTHHHHHHHHHH-TTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHHHH
Confidence 3445566666666 66666666666666666666666666666666666666666666666666666 554444444332
Q ss_pred H-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--hHHHHHHHHHHHHcCChHHH
Q 045024 137 L-HHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTS--IFPLLESGNIFLMLGNFRKG 213 (1173)
Q Consensus 137 ~-~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~a~~~la~~~~~~g~~~~A 213 (1173)
. ..++..+|+..++++++.+|+++.+++.+|.++...|++++|+..|+++++.+|+. ..++..+|.++...|+.++|
T Consensus 84 ~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A 163 (176)
T 2r5s_A 84 LHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAI 163 (176)
T ss_dssp HHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHH
T ss_pred HHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcH
Confidence 2 22233456777777888888878888888888888888888888888888777764 45777788888888888888
Q ss_pred HHHHHHHHh
Q 045024 214 VEQFQLALK 222 (1173)
Q Consensus 214 ~~~~~~al~ 222 (1173)
+..|++++.
T Consensus 164 ~~~y~~al~ 172 (176)
T 2r5s_A 164 ASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888777664
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=3.1e-13 Score=151.58 Aligned_cols=194 Identities=12% Similarity=0.085 Sum_probs=167.0
Q ss_pred HccCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCC----------HHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 045024 34 ENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSID----------TQRAIKCYQRAVSLSPDDSVSGEALCELLE 103 (1173)
Q Consensus 34 ~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~----------~~eA~~~~~~al~~~p~~~~a~~~La~~~~ 103 (1173)
..|.-.++|+..+.+++..+|++..+|...+.+... .|. +++++..++.++..+|++..+|...+.++.
T Consensus 41 ~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~-l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~ 119 (331)
T 3dss_A 41 QAGELDESVLELTSQILGANPDFATLWNCRREVLQH-LETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLS 119 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH-HHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHH-hcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHh
Confidence 455534689999999999999999999999999988 766 688999999999999999999999999999
Q ss_pred HCCC--HHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-------
Q 045024 104 HGGK--ESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKK-WSEAVQSLQHAIRGYPTSPHLWEALGLAYHRL------- 173 (1173)
Q Consensus 104 ~~g~--~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~-~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~------- 173 (1173)
..|+ +++++..+.++++.+|.+..+|...+.+....|. ++++++.+.+++..+|.|..+|..++.++...
T Consensus 120 ~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~~~ 199 (331)
T 3dss_A 120 RLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSG 199 (331)
T ss_dssp HCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC---
T ss_pred ccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhccccc
Confidence 8884 8899999999999999999999999999999998 68999999999999999999999999988877
Q ss_pred -------CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc-----------CChHHHHHHHHHHHhhcCCCH
Q 045024 174 -------GMFSAAIKSYGRAIELDDTSIFPLLESGNIFLML-----------GNFRKGVEQFQLALKISSENV 228 (1173)
Q Consensus 174 -------g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~-----------g~~~~A~~~~~~al~~~p~~~ 228 (1173)
+.++++++.+.+++..+|++..+|+.+.-++... +.++++++.++++++..|++.
T Consensus 200 ~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~ 272 (331)
T 3dss_A 200 PQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPENK 272 (331)
T ss_dssp ---CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred cccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcccc
Confidence 5588899999999999999999997665555544 346788888888888888774
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=1.9e-14 Score=160.91 Aligned_cols=170 Identities=16% Similarity=0.075 Sum_probs=160.2
Q ss_pred hCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHH
Q 045024 52 LNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRR 131 (1173)
Q Consensus 52 ~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~ 131 (1173)
..|.+...++.+|..+.. .|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+++++..+|+.......
T Consensus 112 ~lp~~~~~~~~~a~~~~~-~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~ 190 (287)
T 3qou_A 112 VLPREEELXAQQAMQLMQ-ESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLV 190 (287)
T ss_dssp HSCCHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHH
T ss_pred HcCCchhhHHHHHHHHHh-CCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHH
Confidence 458889999999999999 9999999999999999999999999999999999999999999999999999987777778
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--hHHHHHHHHHHHHcCC
Q 045024 132 LGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTS--IFPLLESGNIFLMLGN 209 (1173)
Q Consensus 132 la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~a~~~la~~~~~~g~ 209 (1173)
.+..+...++.++|+..|++++..+|+++.+++.+|.++...|++++|+..|+++++.+|++ ..++..++.++...|+
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~ 270 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGT 270 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCT
T ss_pred HHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCC
Confidence 88888899999999999999999999999999999999999999999999999999999998 8899999999999999
Q ss_pred hHHHHHHHHHHHh
Q 045024 210 FRKGVEQFQLALK 222 (1173)
Q Consensus 210 ~~~A~~~~~~al~ 222 (1173)
.++|+..|++++.
T Consensus 271 ~~~a~~~~r~al~ 283 (287)
T 3qou_A 271 GDALASXYRRQLY 283 (287)
T ss_dssp TCHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHH
Confidence 9999999999875
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.60 E-value=9.9e-15 Score=141.30 Aligned_cols=120 Identities=16% Similarity=0.243 Sum_probs=87.2
Q ss_pred HHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHH
Q 045024 118 ASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPL 197 (1173)
Q Consensus 118 al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~ 197 (1173)
+..++|+.+.++..+|..++..|+|++|+..|+++++.+|.++.++..+|.++..+|++++|+..|+++++++|+++.++
T Consensus 5 ~a~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~ 84 (126)
T 4gco_A 5 LAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGY 84 (126)
T ss_dssp --CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHH
Confidence 34456767777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhhcCCCHHHHHHHHHH
Q 045024 198 LESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLASG 237 (1173)
Q Consensus 198 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~ 237 (1173)
+.+|.++..+|++++|+..|+++++++|++..++..++.+
T Consensus 85 ~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 85 IRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 7777777777777777777777777777777766665554
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.60 E-value=3.5e-15 Score=153.60 Aligned_cols=168 Identities=13% Similarity=0.004 Sum_probs=149.6
Q ss_pred CCCCHHHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHH
Q 045024 18 NPDDPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEA 97 (1173)
Q Consensus 18 ~P~~~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~ 97 (1173)
+|...+.++.+|..+...|+ +++|+..|+++++.+|+++.+++.+|.++.. .|++++|+..|+++++.+| ++.....
T Consensus 2 ~~~~~~~~~~~a~~~~~~g~-~~~A~~~~~~al~~~P~~~~a~~~la~~~~~-~g~~~~A~~~~~~a~~~~p-~~~~~~~ 78 (176)
T 2r5s_A 2 NASPDEQLLKQVSELLQQGE-HAQALNVIQTLSDELQSRGDVKLAKADCLLE-TKQFELAQELLATIPLEYQ-DNSYKSL 78 (176)
T ss_dssp ----CTTHHHHHHHHHHTTC-HHHHHHHHHTSCHHHHTSHHHHHHHHHHHHH-TTCHHHHHHHHTTCCGGGC-CHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH-CCCHHHHHHHHHHhhhccC-ChHHHHH
Confidence 45555678899999999998 9999999999999999999999999999999 9999999999999999999 8877666
Q ss_pred HHHHHH-HCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcC
Q 045024 98 LCELLE-HGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTS--PHLWEALGLAYHRLG 174 (1173)
Q Consensus 98 La~~~~-~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~--~~~~~~la~~~~~~g 174 (1173)
++.+.. ..++..+|+..++++++.+|+++.+++.+|.++...|++++|+..|+++++.+|+. +.++..+|.++...|
T Consensus 79 ~~~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g 158 (176)
T 2r5s_A 79 IAKLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALG 158 (176)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHC
T ss_pred HHHHHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhC
Confidence 665533 33445568999999999999999999999999999999999999999999999875 669999999999999
Q ss_pred CHHHHHHHHHHHHH
Q 045024 175 MFSAAIKSYGRAIE 188 (1173)
Q Consensus 175 ~~~~A~~~~~~al~ 188 (1173)
+.++|+..|++++.
T Consensus 159 ~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 159 QGNAIASKYRRQLY 172 (176)
T ss_dssp SSCHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHH
Confidence 99999999999875
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=7.8e-14 Score=156.97 Aligned_cols=229 Identities=13% Similarity=-0.007 Sum_probs=195.3
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-C-CHHHHHHHH
Q 045024 4 KGALLLQLEDSLEANPDDPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFS-I-DTQRAIKCY 81 (1173)
Q Consensus 4 ~~aAi~~l~~al~~~P~~~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~-g-~~~eA~~~~ 81 (1173)
...|++.+.+++..+|++..+|..++.++...+.++++++..+++++..+|++..+|..++.++.. . + ++++++..+
T Consensus 70 se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~-l~~~~~~~EL~~~ 148 (349)
T 3q7a_A 70 SERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDR-ISPQDPVSEIEYI 148 (349)
T ss_dssp SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHH-HCCSCCHHHHHHH
T ss_pred CHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-hcCCChHHHHHHH
Confidence 345799999999999999999999999998888559999999999999999999999999999999 7 7 899999999
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHCCCHH--------HHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCC-------HHHHH
Q 045024 82 QRAVSLSPDDSVSGEALCELLEHGGKES--------LEVVVCREASDKSPRAFWAFRRLGYLQLHHKK-------WSEAV 146 (1173)
Q Consensus 82 ~~al~~~p~~~~a~~~La~~~~~~g~~~--------~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~-------~~~A~ 146 (1173)
.++++.+|++..+|...+.+....|.++ ++++.++++++.+|.+..+|..++.+....++ +++++
T Consensus 149 ~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eEL 228 (349)
T 3q7a_A 149 HGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPGAETSSRSLQDEL 228 (349)
T ss_dssp HHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHH
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccccchHHHHHHH
Confidence 9999999999999999999998888887 99999999999999999999999999998887 79999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCH--------------------HHHHHHHHHHHHhC------CCChHHHHHH
Q 045024 147 QSLQHAIRGYPTSPHLWEALGLAYHRLGMF--------------------SAAIKSYGRAIELD------DTSIFPLLES 200 (1173)
Q Consensus 147 ~~l~~al~~~p~~~~~~~~la~~~~~~g~~--------------------~~A~~~~~~al~~~------p~~~~a~~~l 200 (1173)
+.+++++..+|++..+|..+..++...|+. ..-.......+... +.++.++..+
T Consensus 229 e~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l 308 (349)
T 3q7a_A 229 IYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYL 308 (349)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHH
Confidence 999999999999999999999888887764 22222222222222 4577889999
Q ss_pred HHHHHHcCChHHHHHHHHHHH-hhcCCCHHHHHH
Q 045024 201 GNIFLMLGNFRKGVEQFQLAL-KISSENVSAHYG 233 (1173)
Q Consensus 201 a~~~~~~g~~~~A~~~~~~al-~~~p~~~~a~~~ 233 (1173)
+.+|...|+.++|.+.++.+. +.+|-....|..
T Consensus 309 ~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~~ 342 (349)
T 3q7a_A 309 ADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWEF 342 (349)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHHH
Confidence 999999999999999999986 567766555543
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.59 E-value=1.9e-14 Score=165.35 Aligned_cols=276 Identities=13% Similarity=0.063 Sum_probs=128.3
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhh
Q 045024 8 LLQLEDSLEANPDDPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSL 87 (1173)
Q Consensus 8 i~~l~~al~~~P~~~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~ 87 (1173)
++.+++. +++.+|..+|.++...++ +++|++.|.++ +++..+...+..+.. .|++++|+.+++.+.+.
T Consensus 23 ~~fae~~-----~~~~vWs~La~A~l~~g~-~~eAIdsfika-----~D~~~y~~V~~~ae~-~g~~EeAi~yl~~ark~ 90 (449)
T 1b89_A 23 YEFAERC-----NEPAVWSQLAKAQLQKGM-VKEAIDSYIKA-----DDPSSYMEVVQAANT-SGNWEELVKYLQMARKK 90 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHhC-----CChHHHHHHHHHHHHcCC-HHHHHHHHHcC-----CCHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHh
Confidence 4445444 345699999999999988 99999999774 466789999999999 99999999999999885
Q ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 045024 88 SPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALG 167 (1173)
Q Consensus 88 ~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la 167 (1173)
.++ +.+...++.+|.+.|++.++.+.++ .| +..+|..+|..+...|+|++|..+|.++ ..|..+|
T Consensus 91 ~~~-~~i~~~Li~~Y~Klg~l~e~e~f~~-----~p-n~~a~~~IGd~~~~~g~yeeA~~~Y~~a--------~n~~~LA 155 (449)
T 1b89_A 91 ARE-SYVETELIFALAKTNRLAELEEFIN-----GP-NNAHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLA 155 (449)
T ss_dssp -------------------CHHHHTTTTT-----CC-----------------CTTTHHHHHHHT--------TCHHHHH
T ss_pred Ccc-chhHHHHHHHHHHhCCHHHHHHHHc-----CC-cHHHHHHHHHHHHHcCCHHHHHHHHHHh--------hhHHHHH
Confidence 444 6778899999999999999888775 24 3469999999999999999999999987 3688999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHH
Q 045024 168 LAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLASGLLGLAKQCIN 247 (1173)
Q Consensus 168 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~l~~~~~a 247 (1173)
.++.++|++++|++.++++ +++.+|...+.++...|+++.|..+...+ ..+|++ ...+...|..
T Consensus 156 ~~L~~Lg~yq~AVea~~KA-----~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L-~~~ad~---l~~lv~~Yek------- 219 (449)
T 1b89_A 156 STLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLHI-VVHADE---LEELINYYQD------- 219 (449)
T ss_dssp HHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHHTTCHHHHHHTTTTT-TTCHHH---HHHHHHHHHH-------
T ss_pred HHHHHhccHHHHHHHHHHc-----CCchhHHHHHHHHHHcCcHHHHHHHHHHH-HhCHhh---HHHHHHHHHH-------
Confidence 9999999999999999999 47899999999999999999998777653 344443 2234444544
Q ss_pred hhcHHHHHHHHHHHHHHHHHHhhhcCChHHHHHHhchHHHHHhhccchhhhhhchhhhhhhhhhhhHhhHhhhhHHHHHH
Q 045024 248 LGAFRWGASLLEDACKVAEANTRLAGNMSCIWKLHGDIQLTYAKCFPWAEERQSLEFDVETFSASIVSWKTTCLMAAISS 327 (1173)
Q Consensus 248 ~g~~~~A~~~l~~Al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~A 327 (1173)
.|.+++++.+++. .....+....++..++..+... ..++..+.
T Consensus 220 ~G~~eEai~lLe~-------aL~le~ah~~~ftel~il~~ky------------------------------~p~k~~eh 262 (449)
T 1b89_A 220 RGYFEELITMLEA-------ALGLERAHMGMFTELAILYSKF------------------------------KPQKMREH 262 (449)
T ss_dssp TTCHHHHHHHHHH-------HTTSTTCCHHHHHHHHHHHHTT------------------------------CHHHHHHH
T ss_pred CCCHHHHHHHHHH-------HhCCcHHHHHHHHHHHHHHHhc------------------------------CHHHHHHH
Confidence 4445555555544 4444455455555554444222 12335577
Q ss_pred HHHHHHHHhcCC-----CCHHHHHHHHHHHHHHhhHHHhhh
Q 045024 328 KSSYQRALYLAP-----WQANIYTDIAITSDLIYSLNEAYG 363 (1173)
Q Consensus 328 ~~~~~~al~l~p-----~~~~~~~~la~~~~~~g~~~eA~~ 363 (1173)
++.|...+.+.| .++..|..+..+|...++++.|..
T Consensus 263 l~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~ 303 (449)
T 1b89_A 263 LELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 303 (449)
T ss_dssp HHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHH
Confidence 788887787777 788899999999999999998844
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.59 E-value=9.8e-15 Score=161.07 Aligned_cols=220 Identities=15% Similarity=0.127 Sum_probs=171.8
Q ss_pred cHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhC--------CCCHHHHHHHHHH
Q 045024 38 SKEKAAEHFVIAAKL--------NPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLS--------PDDSVSGEALCEL 101 (1173)
Q Consensus 38 ~~~~A~~~~~~al~~--------~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~--------p~~~~a~~~La~~ 101 (1173)
++++|+..|+++++. +|..+.++..+|.++.. .|++++|+..|+++++.. |....++..+|.+
T Consensus 16 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~ 94 (283)
T 3edt_B 16 PRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRD-QNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVL 94 (283)
T ss_dssp CSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH-cccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHH
Confidence 377888888888763 35667899999999999 999999999999999873 5556779999999
Q ss_pred HHHCCCHHHHHHHHHHHHhh--------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHH
Q 045024 102 LEHGGKESLEVVVCREASDK--------SPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRG--------YPTSPHLWEA 165 (1173)
Q Consensus 102 ~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~--------~p~~~~~~~~ 165 (1173)
+...|++++|+..+++++.. +|....++..+|.++...|++++|+..++++++. .|....++..
T Consensus 95 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 174 (283)
T 3edt_B 95 YGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNN 174 (283)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 99999999999999999988 4667889999999999999999999999999998 6677889999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHh---------CCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhh----cCCCHHHHH
Q 045024 166 LGLAYHRLGMFSAAIKSYGRAIEL---------DDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKI----SSENVSAHY 232 (1173)
Q Consensus 166 la~~~~~~g~~~~A~~~~~~al~~---------~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~----~p~~~~a~~ 232 (1173)
+|.++...|++++|+..++++++. .+.....+..++..+...+....+.. +..+... .+..+
T Consensus 175 la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~---- 249 (283)
T 3edt_B 175 LASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAP-YGEYGSWYKACKVDSP---- 249 (283)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC-------------CCCCCCH----
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHH-HHHHHHHHHhcCCCCH----
Confidence 999999999999999999999987 44556677777777776655544433 2222211 11222
Q ss_pred HHHHHHHHHHHHHHHhhcHHHHHHHHHHHHH
Q 045024 233 GLASGLLGLAKQCINLGAFRWGASLLEDACK 263 (1173)
Q Consensus 233 ~la~~~~~l~~~~~a~g~~~~A~~~l~~Al~ 263 (1173)
....++..+|..+...|++++|...++++++
T Consensus 250 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 250 TVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2234455566666667778888888887765
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.59 E-value=1.3e-14 Score=140.58 Aligned_cols=111 Identities=18% Similarity=0.235 Sum_probs=42.5
Q ss_pred CCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHH
Q 045024 53 NPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRL 132 (1173)
Q Consensus 53 ~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l 132 (1173)
+|+.+.++..+|..++. .|++++|+..|+++++++|+++.++..+|.++...|++++|+..|+++++++|+++.+++.+
T Consensus 9 nP~~a~~~~~~G~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l 87 (126)
T 4gco_A 9 NPELAQEEKNKGNEYFK-KGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRK 87 (126)
T ss_dssp CHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 33333333333333333 33333333333333333333333333333333333333333333333333333333333333
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 045024 133 GYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWE 164 (1173)
Q Consensus 133 a~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~ 164 (1173)
|.++..+|++++|+..|+++++++|++..++.
T Consensus 88 g~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~ 119 (126)
T 4gco_A 88 AACLVAMREWSKAQRAYEDALQVDPSNEEARE 119 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHH
Confidence 33333333333333333333333333333333
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.6e-13 Score=159.95 Aligned_cols=249 Identities=10% Similarity=-0.003 Sum_probs=174.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------CChHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCHHHHHHHH
Q 045024 162 LWEALGLAYHRLGMFSAAIKSYGRAIELDD------TSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLA 235 (1173)
Q Consensus 162 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p------~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la 235 (1173)
.++.+|..+...|++++|+..|+++++..+ ....++..+|.+|...|++++|+..++++++..+.........+
T Consensus 103 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 182 (378)
T 3q15_A 103 SLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTI 182 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHH
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHH
Confidence 567789999999999999999999987642 23568889999999999999999999999998776554334677
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHhhhcCChHHHHHHhchHHHHHhhccchhhhhhchhhhhhhhhhhhHh
Q 045024 236 SGLLGLAKQCINLGAFRWGASLLEDACKVAEANTRLAGNMSCIWKLHGDIQLTYAKCFPWAEERQSLEFDVETFSASIVS 315 (1173)
Q Consensus 236 ~~~~~l~~~~~a~g~~~~A~~~l~~Al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 315 (1173)
.++..+|..+...|++++|...+++|++..+..... ...+.++..+|.++...+
T Consensus 183 ~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~-~~~~~~~~~lg~~y~~~~------------------------- 236 (378)
T 3q15_A 183 QSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQND-RFIAISLLNIANSYDRSG------------------------- 236 (378)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHHHHHT-------------------------
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHHHHHCC-------------------------
Confidence 888888989999999999999999999987654221 133444455555544433
Q ss_pred hHhhhhHHHHHHHHHHHHHHh-----cCCCCHHHHHHHHHHHHHHhhHHHhhhhhhhhhHHHHHHHHHHHhhcCCCHHHH
Q 045024 316 WKTTCLMAAISSKSSYQRALY-----LAPWQANIYTDIAITSDLIYSLNEAYGHYQSAWHVSEKMALGALLLEGDNCQFW 390 (1173)
Q Consensus 316 ~~~~~~~~~~~A~~~~~~al~-----l~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~A~k~~~~al~~~p~~~~~~ 390 (1173)
++++|+..|++++. .+|..+.++..+|.++...|++++|... +++++...+...
T Consensus 237 -------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~-----------~~~al~~~~~~~--- 295 (378)
T 3q15_A 237 -------DDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQF-----------IEEGLDHITARS--- 295 (378)
T ss_dssp -------CHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHH-----------HHHHHHHCCTTC---
T ss_pred -------CHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHH-----------HHHHHHHHHHcC---
Confidence 36678888888887 6777777888888888888888777332 333333322110
Q ss_pred HHHHHhhcccHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhhCCCChhHHHHhHHHHHHhcC
Q 045024 391 VTLGCLSNYNGLKQHALIRGLQLDVSLADAWAHIGKLYGEVGE---KKLARQAFDSARSIDPSLALPWAGMSADVQASES 467 (1173)
Q Consensus 391 ~~Lg~~~~~~~~a~~a~~kal~l~p~~~~a~~~Lg~~y~~~g~---~e~A~~~f~~al~~~P~~~~a~~~l~a~~~~~~g 467 (1173)
+|.....+..++.+|...|+ +.+|+..+++. ...|.....+.. +|.+|...|
T Consensus 296 -----------------------~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~-la~~y~~~g 350 (378)
T 3q15_A 296 -----------------------HKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEACARS-AAAVFESSC 350 (378)
T ss_dssp -----------------------CSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHH-HHHHHHHTT
T ss_pred -----------------------CHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHHHHH-HHHHHHHCC
Confidence 23333445666777777777 66777766652 122223334444 666777788
Q ss_pred CHHHHHHHHHHHHhc
Q 045024 468 LVDDAFESCLRAVQI 482 (1173)
Q Consensus 468 ~~~eA~~~~~~al~~ 482 (1173)
++++|...|+++++.
T Consensus 351 ~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 351 HFEQAAAFYRKVLKA 365 (378)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 888888877777654
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=3.2e-14 Score=159.06 Aligned_cols=171 Identities=16% Similarity=0.074 Sum_probs=162.4
Q ss_pred HhCCCCHHHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHH
Q 045024 16 EANPDDPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSG 95 (1173)
Q Consensus 16 ~~~P~~~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~ 95 (1173)
...|++...++.+|..+...|+ +++|+..|+++++.+|+++.+++.+|.++.. .|++++|+..|++++..+|+.....
T Consensus 111 ~~lp~~~~~~~~~a~~~~~~g~-~~~A~~~~~~al~~~P~~~~a~~~la~~~~~-~g~~~~A~~~l~~~~~~~p~~~~~~ 188 (287)
T 3qou_A 111 XVLPREEELXAQQAMQLMQESN-YTDALPLLXDAWQLSNQNGEIGLLLAETLIA-LNRSEDAEAVLXTIPLQDQDTRYQG 188 (287)
T ss_dssp HHSCCHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHTTSCHHHHHHHHHHHHH-TTCHHHHHHHHTTSCGGGCSHHHHH
T ss_pred HHcCCchhhHHHHHHHHHhCCC-HHHHHHHHHHHHHhCCcchhHHHHHHHHHHH-CCCHHHHHHHHHhCchhhcchHHHH
Confidence 3459999999999999999988 9999999999999999999999999999999 9999999999999999999777777
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHc
Q 045024 96 EALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTS--PHLWEALGLAYHRL 173 (1173)
Q Consensus 96 ~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~--~~~~~~la~~~~~~ 173 (1173)
...+..+...++.++|+..+++++..+|+++.+++.+|.++...|++++|+..|+++++.+|++ ..++..++.++...
T Consensus 189 ~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~ 268 (287)
T 3qou_A 189 LVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAAL 268 (287)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHc
Confidence 7777778899999999999999999999999999999999999999999999999999999988 88999999999999
Q ss_pred CCHHHHHHHHHHHHH
Q 045024 174 GMFSAAIKSYGRAIE 188 (1173)
Q Consensus 174 g~~~~A~~~~~~al~ 188 (1173)
|+.++|+..|++++.
T Consensus 269 g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 269 GTGDALASXYRRQLY 283 (287)
T ss_dssp CTTCHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHH
Confidence 999999999999875
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=9.8e-14 Score=171.09 Aligned_cols=162 Identities=18% Similarity=0.102 Sum_probs=96.6
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q 045024 39 KEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREA 118 (1173)
Q Consensus 39 ~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~a 118 (1173)
+++|+..|+++++.+|+++.+++.+|.++.. .|++++|+..|+++++.+|++..++..+|.++...|++++|+..++++
T Consensus 5 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 83 (568)
T 2vsy_A 5 GPRELLQLRAAVRHRPQDFVAWLMLADAELG-MGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQA 83 (568)
T ss_dssp ----------------CCHHHHHHHHHHHHH-HTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 5666666666666666666666666666666 666666666666666666666666666666666666666666666666
Q ss_pred HhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHhCCCChH
Q 045024 119 SDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRL---GMFSAAIKSYGRAIELDDTSIF 195 (1173)
Q Consensus 119 l~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~---g~~~~A~~~~~~al~~~p~~~~ 195 (1173)
++.+|+++.++..+|.++...|++++|+..|+++++.+|++..++..+|.++... |++++|++.++++++.+|++..
T Consensus 84 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 163 (568)
T 2vsy_A 84 SDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGAVE 163 (568)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTCCCSC
T ss_pred HhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCCcccC
Confidence 6666666666666666666666666666666666666666666666666666666 6666666666666666666555
Q ss_pred HHHHHH
Q 045024 196 PLLESG 201 (1173)
Q Consensus 196 a~~~la 201 (1173)
.+..++
T Consensus 164 ~~~~l~ 169 (568)
T 2vsy_A 164 PFAFLS 169 (568)
T ss_dssp HHHHTT
T ss_pred hHHHhC
Confidence 544433
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=5e-14 Score=173.70 Aligned_cols=165 Identities=22% Similarity=0.154 Sum_probs=141.9
Q ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 045024 71 SIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQ 150 (1173)
Q Consensus 71 ~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~ 150 (1173)
.|++++|+..|+++++.+|++..++..+|.++...|++++|+..++++++.+|+++.++..+|.++...|++++|+..|+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 81 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQ 81 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc---CChHHHHHHHHHHHhhcCCC
Q 045024 151 HAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLML---GNFRKGVEQFQLALKISSEN 227 (1173)
Q Consensus 151 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~---g~~~~A~~~~~~al~~~p~~ 227 (1173)
++++.+|+++.++..+|.++...|++++|++.|+++++.+|++..++..+|.++... |++++|.+.|+++++.+|++
T Consensus 82 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p~~ 161 (568)
T 2vsy_A 82 QASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGA 161 (568)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTCCC
T ss_pred HHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCCcc
Confidence 999999999999999999999999999999999999999999999999999999999 99999999999999999998
Q ss_pred HHHHHHHH
Q 045024 228 VSAHYGLA 235 (1173)
Q Consensus 228 ~~a~~~la 235 (1173)
...+..++
T Consensus 162 ~~~~~~l~ 169 (568)
T 2vsy_A 162 VEPFAFLS 169 (568)
T ss_dssp SCHHHHTT
T ss_pred cChHHHhC
Confidence 87765554
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=4.6e-13 Score=150.65 Aligned_cols=244 Identities=12% Similarity=0.019 Sum_probs=195.5
Q ss_pred HHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccC-CHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 045024 23 SLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSI-DTQRAIKCYQRAVSLSPDDSVSGEALCEL 101 (1173)
Q Consensus 23 ~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g-~~~eA~~~~~~al~~~p~~~~a~~~La~~ 101 (1173)
.++-.+..+. ..++..++|+..+++++..+|++..+|..++.++.. .| ++++++..+++++..+|++..+|...+.+
T Consensus 55 ~~~~~~r~~~-~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~-l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wl 132 (349)
T 3q7a_A 55 DAMDYFRAIA-AKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTS-LNKSLEDELRLMNEFAVQNLKSYQVWHHRLLL 132 (349)
T ss_dssp HHHHHHHHHH-HTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHH
T ss_pred HHHHHHHHHH-HhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 3444444444 344436899999999999999999999999999999 99 59999999999999999999999999999
Q ss_pred HHHC-C-CHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHH--------HHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 045024 102 LEHG-G-KESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWS--------EAVQSLQHAIRGYPTSPHLWEALGLAYH 171 (1173)
Q Consensus 102 ~~~~-g-~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~--------~A~~~l~~al~~~p~~~~~~~~la~~~~ 171 (1173)
+... + ++++++..+.++++.+|++..+|...+.+....|.++ ++++.++++++.+|.|..+|...+.++.
T Consensus 133 L~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~ 212 (349)
T 3q7a_A 133 LDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRV 212 (349)
T ss_dssp HHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHT
T ss_pred HHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 9887 8 9999999999999999999999999999999988888 9999999999999999999999999999
Q ss_pred HcCC-------HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCh--------------------HHHHHHHHHHHhhc
Q 045024 172 RLGM-------FSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNF--------------------RKGVEQFQLALKIS 224 (1173)
Q Consensus 172 ~~g~-------~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~--------------------~~A~~~~~~al~~~ 224 (1173)
..++ ++++++.+++++..+|++..+|+.+..++...|+. .+-.+.....+...
T Consensus 213 ~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (349)
T 3q7a_A 213 SRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDP 292 (349)
T ss_dssp TSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-C
T ss_pred hccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcc
Confidence 9987 79999999999999999999999999998887765 22222222222222
Q ss_pred ------CCCHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHh-hhcCChHHHHHHh
Q 045024 225 ------SENVSAHYGLASGLLGLAKQCINLGAFRWGASLLEDACKVAEANT-RLAGNMSCIWKLH 282 (1173)
Q Consensus 225 ------p~~~~a~~~la~~~~~l~~~~~a~g~~~~A~~~l~~Al~~~~~~~-~~~~~~~~~~~~~ 282 (1173)
+.++.+...++.++...|+ . ++|++.+.... ..+|.....|...
T Consensus 293 ~~~~~~~~s~~al~~l~d~~~~~~~-------~-------~~a~~~~~~l~~~~dpir~~yw~~~ 343 (349)
T 3q7a_A 293 LPEDTPLPVPLALEYLADSFIEQNR-------V-------DDAAKVFEKLSSEYDQMRAGYWEFR 343 (349)
T ss_dssp CCSSCCSCCHHHHHHHHHHHHHTTC-------H-------HHHHHHHHHHHHTTCGGGHHHHHHH
T ss_pred cccccCCCcHHHHHHHHHHHHhcCC-------H-------HHHHHHHHHHHhhhChHHHHHHHHH
Confidence 3556677777777766544 3 44555544443 4455555555443
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=99.53 E-value=2.7e-14 Score=142.67 Aligned_cols=116 Identities=16% Similarity=0.131 Sum_probs=104.3
Q ss_pred HHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 045024 113 VVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDT 192 (1173)
Q Consensus 113 ~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 192 (1173)
..++++++++|+++.+++.+|.++...|++++|+..|++++..+|+++.+|..+|.++...|++++|+..|+++++++|+
T Consensus 23 ~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~ 102 (151)
T 3gyz_A 23 ATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN 102 (151)
T ss_dssp CCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS
T ss_pred CCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC
Confidence 34566777889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCH
Q 045024 193 SIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENV 228 (1173)
Q Consensus 193 ~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 228 (1173)
++.+++.+|.+|..+|++++|+..|+++++..|+.+
T Consensus 103 ~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 103 DYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 999999999999999999999999999999988754
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.53 E-value=2.2e-14 Score=156.31 Aligned_cols=205 Identities=11% Similarity=0.025 Sum_probs=178.0
Q ss_pred HHHHHHHHHHHccCcHHHHHHHHHHHHHhCCCCHHHHHHH-------HHHHHHccCCHHHHHHHHHHHHhhCCCCH----
Q 045024 24 LHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYL-------GHYYTRFSIDTQRAIKCYQRAVSLSPDDS---- 92 (1173)
Q Consensus 24 ~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l-------g~~~~~~~g~~~eA~~~~~~al~~~p~~~---- 92 (1173)
.++..|.-+ ..+ ++..|...|.+++..+|+.+++|..+ +.++.. .++..+++..+++.+.+.|...
T Consensus 9 ~~~~~~~~~-~~~-d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~-~~r~~~a~~~~~~~l~l~p~~l~a~~ 85 (282)
T 4f3v_A 9 SLFESAVSM-LPM-SEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFR-AWYSRRNFGQLSGSVQISMSTLNARI 85 (282)
T ss_dssp HHHHHHHHH-TTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHH-HHHTGGGTTHHHHTTTCCGGGGCCEE
T ss_pred HHHHHHhcc-cCC-CHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHH-HHHHHHHHHHHHHHhcCChhhhhhhh
Confidence 345556655 444 49999999999999999999999999 899999 9999999999999999877543
Q ss_pred -----------------HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 045024 93 -----------------VSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRG 155 (1173)
Q Consensus 93 -----------------~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~ 155 (1173)
+....++.++...|++++|.+.|..++...|++. +.+.+|.++++.++|++|+..|+++...
T Consensus 86 ~~~g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~ 164 (282)
T 4f3v_A 86 AIGGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKW 164 (282)
T ss_dssp ECCTTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGC
T ss_pred ccCCcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhcc
Confidence 3455688999999999999999999999999888 9999999999999999999999987665
Q ss_pred CCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CC-ChHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCHHH
Q 045024 156 YPTS--PHLWEALGLAYHRLGMFSAAIKSYGRAIELD--DT-SIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSA 230 (1173)
Q Consensus 156 ~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~-~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a 230 (1173)
.+.. ..+++.+|.++..+|++++|+..|++++... |. ...+++.+|.++..+|+.++|...|++++..+|+ ..+
T Consensus 165 ~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~ 243 (282)
T 4f3v_A 165 PDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKV 243 (282)
T ss_dssp SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHH
T ss_pred CCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHH
Confidence 3221 3589999999999999999999999998654 55 5679999999999999999999999999999999 765
Q ss_pred HHH
Q 045024 231 HYG 233 (1173)
Q Consensus 231 ~~~ 233 (1173)
...
T Consensus 244 ~~a 246 (282)
T 4f3v_A 244 AAA 246 (282)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=99.51 E-value=3.4e-14 Score=141.91 Aligned_cols=116 Identities=10% Similarity=-0.086 Sum_probs=83.0
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 045024 79 KCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPT 158 (1173)
Q Consensus 79 ~~~~~al~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~ 158 (1173)
..++++++++|++..+++.+|.++...|++++|+..|++++..+|+++.+|..+|.++...|++++|+..|++++.++|+
T Consensus 23 ~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~ 102 (151)
T 3gyz_A 23 ATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN 102 (151)
T ss_dssp CCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS
T ss_pred CCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC
Confidence 34556666677777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Q 045024 159 SPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSI 194 (1173)
Q Consensus 159 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 194 (1173)
++.+++.+|.+|...|++++|+..|++++++.|+..
T Consensus 103 ~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 103 DYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 777777777777777777777777777777776643
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.49 E-value=1e-12 Score=139.74 Aligned_cols=176 Identities=17% Similarity=0.101 Sum_probs=121.2
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCC----CHHHHHHHH
Q 045024 40 EKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGG----KESLEVVVC 115 (1173)
Q Consensus 40 ~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~~g----~~~~A~~~~ 115 (1173)
.+|+..|+++.+. .++.+++.+|.+|.. .+++++|+.+|+++++. .++.+++.+|.+|.. + ++++|+.+|
T Consensus 3 ~eA~~~~~~aa~~--g~~~a~~~lg~~~~~-~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 3 TEPGSQYQQQAEA--GDRRAQYYLADTWVS-SGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp -CTTHHHHHHHHT--TCHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred chHHHHHHHHHHC--CCHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 4566667766654 566777777777777 77777777777777653 466677777777766 5 677777777
Q ss_pred HHHHhhCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHH----cCCHHHHHHHHHH
Q 045024 116 REASDKSPRAFWAFRRLGYLQLH----HKKWSEAVQSLQHAIRGYP--TSPHLWEALGLAYHR----LGMFSAAIKSYGR 185 (1173)
Q Consensus 116 ~~al~~~p~~~~a~~~la~~~~~----~g~~~~A~~~l~~al~~~p--~~~~~~~~la~~~~~----~g~~~~A~~~~~~ 185 (1173)
+++.+ +.++.+++.+|.+|.. .+++++|+..|+++.+..| .++.+++.+|.+|.. .+++++|+..|++
T Consensus 77 ~~A~~--~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~ 154 (212)
T 3rjv_A 77 EKAVE--AGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKG 154 (212)
T ss_dssp HHHHH--TTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHH
T ss_pred HHHHH--CCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 77743 4566777777777766 6677777777777777666 346777777777777 6777777777777
Q ss_pred HHHhCCCChHHHHHHHHHHHHc-C-----ChHHHHHHHHHHHhhc
Q 045024 186 AIELDDTSIFPLLESGNIFLML-G-----NFRKGVEQFQLALKIS 224 (1173)
Q Consensus 186 al~~~p~~~~a~~~la~~~~~~-g-----~~~~A~~~~~~al~~~ 224 (1173)
+++. |.++.+++.+|.+|... | ++++|+.+|+++.+..
T Consensus 155 A~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 155 SSSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 7776 55666777777777653 2 6777777777777653
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=99.49 E-value=7.9e-14 Score=155.33 Aligned_cols=198 Identities=13% Similarity=-0.012 Sum_probs=161.1
Q ss_pred CCCHHHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 045024 19 PDDPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEAL 98 (1173)
Q Consensus 19 P~~~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~L 98 (1173)
|.++..++.+|..++..|+ +++|+..|+++++.+|+++.+++.+|.++.. .|++++|+..|+++++++|++..+++.+
T Consensus 1 p~~a~~~~~~g~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~l 78 (281)
T 2c2l_A 1 SPSAQELKEQGNRLFVGRK-YPEAAACYGRAITRNPLVAVYYTNRALCYLK-MQQPEQALADCRRALELDGQSVKAHFFL 78 (281)
T ss_dssp CCCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTSCTTCHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCccHHHHHHHHHHHHH-hcCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 6778899999999999987 9999999999999999999999999999999 9999999999999999999999999999
Q ss_pred HHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Q 045024 99 CELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSA 178 (1173)
Q Consensus 99 a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~ 178 (1173)
|.++...|++++|+..|+++++.+|+++..+......... ..++...........|.+......++.++ .|++++
T Consensus 79 g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~i~~~l~~l~--~~~~~~ 153 (281)
T 2c2l_A 79 GQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALR---IAKKKRWNSIEERRIHQESELHSYLTRLI--AAERER 153 (281)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHH---HHHHHHHHHHHHTCCCCCCHHHHHHHHHH--HHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHH---HHHHHHHHHHHHHHHhhhHHHHHHHHHHH--HHHHHH
Confidence 9999999999999999999999988653222111111111 22223333333456677777777777765 699999
Q ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHHc-CChHHHHHHHHHHHhh
Q 045024 179 AIKSYGRAIELDDTSIFPLLESGNIFLML-GNFRKGVEQFQLALKI 223 (1173)
Q Consensus 179 A~~~~~~al~~~p~~~~a~~~la~~~~~~-g~~~~A~~~~~~al~~ 223 (1173)
|++.++++++.+|++......++.++... +.+++|...|.++.+.
T Consensus 154 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 154 ELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 99999999999999888878888777776 7788999999888764
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.49 E-value=6e-13 Score=150.27 Aligned_cols=198 Identities=13% Similarity=0.052 Sum_probs=164.3
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 045024 6 ALLLQLEDSLEANPDDPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAV 85 (1173)
Q Consensus 6 aAi~~l~~al~~~P~~~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al 85 (1173)
+|.+.++++.+..+.. ++..++++++|+..|.++ |.+|.. .|++++|+..|.+++
T Consensus 9 eA~~~~~~a~k~~~~~----------~~~~~~~~~~A~~~~~~a--------------~~~~~~-~g~~~~A~~~~~~al 63 (307)
T 2ifu_A 9 EAHEHIAKAEKYLKTS----------FMKWKPDYDSAASEYAKA--------------AVAFKN-AKQLEQAKDAYLQEA 63 (307)
T ss_dssp HHHHHHHHHHHHHCCC----------SSSCSCCHHHHHHHHHHH--------------HHHHHH-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccc----------ccCCCCCHHHHHHHHHHH--------------HHHHHH-cCCHHHHHHHHHHHH
Confidence 4578888887766642 122123488888888875 678889 999999999999999
Q ss_pred hhCCCC------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCC------cHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 045024 86 SLSPDD------SVSGEALCELLEHGGKESLEVVVCREASDKSPR------AFWAFRRLGYLQLHHKKWSEAVQSLQHAI 153 (1173)
Q Consensus 86 ~~~p~~------~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~------~~~a~~~la~~~~~~g~~~~A~~~l~~al 153 (1173)
++.+.. ..++..+|.+|...|++++|+.+|++++++.+. ...++..+|.+|.. |++++|+..|++++
T Consensus 64 ~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al 142 (307)
T 2ifu_A 64 EAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAA 142 (307)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHH
Confidence 886533 346889999999999999999999999887432 24678899999998 99999999999999
Q ss_pred HhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------hHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 045024 154 RGYPTS------PHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTS------IFPLLESGNIFLMLGNFRKGVEQFQLAL 221 (1173)
Q Consensus 154 ~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~a~~~la~~~~~~g~~~~A~~~~~~al 221 (1173)
.+.|.. ..++..+|.+|...|++++|+..|++++++.|.+ ..++..+|.++..+|++++|+..|++++
T Consensus 143 ~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 143 AVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 987643 5688999999999999999999999999986653 3477889999999999999999999999
Q ss_pred hhcCCCHHH
Q 045024 222 KISSENVSA 230 (1173)
Q Consensus 222 ~~~p~~~~a 230 (1173)
.+|.....
T Consensus 223 -~~p~~~~~ 230 (307)
T 2ifu_A 223 -SIPGFSGS 230 (307)
T ss_dssp -TSTTSTTS
T ss_pred -CCCCCCCC
Confidence 99976543
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=99.48 E-value=5.7e-15 Score=169.11 Aligned_cols=181 Identities=12% Similarity=0.063 Sum_probs=134.5
Q ss_pred HHHHHHHHHH----HHHhCCCCHHHHHHHHHHHH------------HccCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 045024 39 KEKAAEHFVI----AAKLNPQNAVAFRYLGHYYT------------RFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELL 102 (1173)
Q Consensus 39 ~~~A~~~~~~----al~~~p~~~~a~~~lg~~~~------------~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~ 102 (1173)
+++|+..+.. ++.++|+. ++...|.... . .+++++|+..|+++++.+|++..++..+|.++
T Consensus 81 ~e~al~~~~~Ge~~~l~i~p~~--ayg~~g~~~~~i~~~~~l~f~~~-L~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~ 157 (336)
T 1p5q_A 81 LERAIQRMEKGEHSIVYLKPSY--AFGSVGKEKFQIPPNAELKYELH-LKSFEKAKESWEMNSEEKLEQSTIVKERGTVY 157 (336)
T ss_dssp HHHHHTTCCTTCEEEEEECTTT--TTTTTCBGGGTBCSSCCEEEEEE-EEEEECCCCGGGCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCCeEEEEECCcc--ccCcCCCCccCCCCCCeEEEEEE-EeecccccchhcCCHHHHHHHHHHHHHHHHHH
Confidence 6777777777 66677765 4444443332 3 45666677777777777777777777777777
Q ss_pred HHCCCHHHHHHHHHHHHhhCCCc---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 045024 103 EHGGKESLEVVVCREASDKSPRA---------------FWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALG 167 (1173)
Q Consensus 103 ~~~g~~~~A~~~~~~al~~~p~~---------------~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la 167 (1173)
...|++++|+..|++++...|++ ..++..+|.++...|++++|+..|+++++++|+++.+++.+|
T Consensus 158 ~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg 237 (336)
T 1p5q_A 158 FKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRG 237 (336)
T ss_dssp HHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence 77777777777777777777766 577888888888888888888888888888888888888888
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHH-HHHHHHHHh
Q 045024 168 LAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKG-VEQFQLALK 222 (1173)
Q Consensus 168 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A-~~~~~~al~ 222 (1173)
.+|...|++++|+..|+++++++|++..++..++.++..+|++++| ...|++++.
T Consensus 238 ~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 238 EAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888888888888888888888888888888888777 445666554
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=2.8e-13 Score=135.07 Aligned_cols=120 Identities=14% Similarity=0.120 Sum_probs=103.8
Q ss_pred HHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 045024 112 VVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDD 191 (1173)
Q Consensus 112 ~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 191 (1173)
-..|++++..+|++..+++.+|.++...|++++|+..|++++..+|+++.++..+|.++...|++++|+..|++++.++|
T Consensus 7 ~~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p 86 (148)
T 2vgx_A 7 GGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDI 86 (148)
T ss_dssp CCSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred hhhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 34577788888888888888888888888888888888888888888888888888888888999999999999888888
Q ss_pred CChHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCHHHH
Q 045024 192 TSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAH 231 (1173)
Q Consensus 192 ~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~ 231 (1173)
+++.+++.+|.++...|++++|+..|+++++.+|+++...
T Consensus 87 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 126 (148)
T 2vgx_A 87 XEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFX 126 (148)
T ss_dssp TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGH
T ss_pred CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcch
Confidence 8888888889999999999999999999888888877653
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.47 E-value=3.1e-12 Score=135.90 Aligned_cols=185 Identities=15% Similarity=0.018 Sum_probs=163.8
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccC---CHHHHHHHHHH
Q 045024 7 LLLQLEDSLEANPDDPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSI---DTQRAIKCYQR 83 (1173)
Q Consensus 7 Ai~~l~~al~~~P~~~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g---~~~eA~~~~~~ 83 (1173)
|+..|+++.+. .++.+++.+|.+|...++ +++|+.+|+++++. .++.+++.+|.+|.. .| ++++|+.+|++
T Consensus 5 A~~~~~~aa~~--g~~~a~~~lg~~~~~~~~-~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~ 78 (212)
T 3rjv_A 5 PGSQYQQQAEA--GDRRAQYYLADTWVSSGD-YQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQADYPQARQLAEK 78 (212)
T ss_dssp TTHHHHHHHHT--TCHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHC--CCHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHH
Confidence 68899999875 789999999999999887 99999999999865 689999999999988 44 89999999999
Q ss_pred HHhhCCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHhhCC--CcHHHHHHHHHHHHH----cCCHHHHHHHHHHHH
Q 045024 84 AVSLSPDDSVSGEALCELLEH----GGKESLEVVVCREASDKSP--RAFWAFRRLGYLQLH----HKKWSEAVQSLQHAI 153 (1173)
Q Consensus 84 al~~~p~~~~a~~~La~~~~~----~g~~~~A~~~~~~al~~~p--~~~~a~~~la~~~~~----~g~~~~A~~~l~~al 153 (1173)
+.+ +.++.+++.+|.+|.. .+++++|+..|+++.+..| +++.+++.+|.+|.. .+++++|+..|++++
T Consensus 79 A~~--~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~ 156 (212)
T 3rjv_A 79 AVE--AGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSS 156 (212)
T ss_dssp HHH--TTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH
T ss_pred HHH--CCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 965 6789999999999988 8999999999999999988 458999999999999 899999999999999
Q ss_pred HhCCCCHHHHHHHHHHHHHc-C-----CHHHHHHHHHHHHHhCCCChHHHHHHHH
Q 045024 154 RGYPTSPHLWEALGLAYHRL-G-----MFSAAIKSYGRAIELDDTSIFPLLESGN 202 (1173)
Q Consensus 154 ~~~p~~~~~~~~la~~~~~~-g-----~~~~A~~~~~~al~~~p~~~~a~~~la~ 202 (1173)
+. |.++.+++.+|.+|... | ++++|+..|+++.+.. +..+...++.
T Consensus 157 ~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g--~~~A~~~l~~ 208 (212)
T 3rjv_A 157 SL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG--FDTGCEEFDR 208 (212)
T ss_dssp HT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT--CHHHHHHHHH
T ss_pred Hc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHH
Confidence 98 77788999999999864 3 8999999999999875 4445444443
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=1.6e-13 Score=136.82 Aligned_cols=118 Identities=14% Similarity=-0.085 Sum_probs=82.6
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 045024 79 KCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPT 158 (1173)
Q Consensus 79 ~~~~~al~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~ 158 (1173)
..|+++++++|++..+++.+|..+...|++++|+..|++++..+|+++.++..+|.++...|++++|+..|++++.++|+
T Consensus 8 ~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~ 87 (148)
T 2vgx_A 8 GTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIX 87 (148)
T ss_dssp CSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred hhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 45666666666666667777777777777777777777777777777777777777777777777777777777777777
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHH
Q 045024 159 SPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFP 196 (1173)
Q Consensus 159 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a 196 (1173)
++.+++.+|.++...|++++|+..|+++++++|+++..
T Consensus 88 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 125 (148)
T 2vgx_A 88 EPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEF 125 (148)
T ss_dssp CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGG
T ss_pred CchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcc
Confidence 77777777777777777777777777777776665543
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.46 E-value=2.9e-12 Score=123.40 Aligned_cols=129 Identities=29% Similarity=0.421 Sum_probs=52.1
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcC
Q 045024 61 RYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHK 140 (1173)
Q Consensus 61 ~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g 140 (1173)
+.+|.++.. .|++++|+..|+++++.+|.+..++..+|.++...|++++|+..+++++...|.++.++..+|.++...|
T Consensus 5 ~~l~~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 83 (136)
T 2fo7_A 5 YNLGNAYYK-QGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQG 83 (136)
T ss_dssp HHHHHHHHH-HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHH-cCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhc
Confidence 334444444 4444444444444444444443333334444433344444444444433333333333333444444444
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 045024 141 KWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELD 190 (1173)
Q Consensus 141 ~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 190 (1173)
++++|+..+++++...|.+..++..+|.++...|++++|+..++++++.+
T Consensus 84 ~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 133 (136)
T 2fo7_A 84 DYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 133 (136)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccC
Confidence 44444444444444444333333444444444444444444444443333
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.45 E-value=3.4e-12 Score=122.94 Aligned_cols=135 Identities=26% Similarity=0.383 Sum_probs=130.1
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 045024 93 VSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHR 172 (1173)
Q Consensus 93 ~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~ 172 (1173)
.+++.+|.++...|++++|+..++++++..|+++.++..+|.++...|++++|+..+++++...|.++.++..+|.++..
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCC
Q 045024 173 LGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSEN 227 (1173)
Q Consensus 173 ~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 227 (1173)
.|++++|+..++++++..|.+..++..+|.++...|++++|...|++++..+|++
T Consensus 82 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 136 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 136 (136)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTTC
T ss_pred hcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCCC
Confidence 9999999999999999999999999999999999999999999999999998863
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=99.45 E-value=9.1e-13 Score=130.21 Aligned_cols=127 Identities=17% Similarity=0.169 Sum_probs=106.1
Q ss_pred HHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 045024 113 VVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDT 192 (1173)
Q Consensus 113 ~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 192 (1173)
..|++++..+|++...++.+|..+...|++++|+..|++++..+|+++.++..+|.++...|++++|+..|++++.++|+
T Consensus 5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 84 (142)
T 2xcb_A 5 GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN 84 (142)
T ss_dssp ----CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred hhHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 45677788888888888889999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCHHHHHHHHHHHH
Q 045024 193 SIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLASGLL 239 (1173)
Q Consensus 193 ~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~ 239 (1173)
++.+++.+|.++...|++++|+..|+++++.+|+++........+..
T Consensus 85 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 131 (142)
T 2xcb_A 85 EPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARAGA 131 (142)
T ss_dssp CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHH
Confidence 99999999999999999999999999999988888766544444333
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=99.44 E-value=5.2e-14 Score=161.09 Aligned_cols=171 Identities=20% Similarity=0.186 Sum_probs=154.2
Q ss_pred cCCHHHHHHHHHH----HHhhCCCCHHHHHHHHHHHH------------HCCCHHHHHHHHHHHHhhCCCcHHHHHHHHH
Q 045024 71 SIDTQRAIKCYQR----AVSLSPDDSVSGEALCELLE------------HGGKESLEVVVCREASDKSPRAFWAFRRLGY 134 (1173)
Q Consensus 71 ~g~~~eA~~~~~~----al~~~p~~~~a~~~La~~~~------------~~g~~~~A~~~~~~al~~~p~~~~a~~~la~ 134 (1173)
.+.+++|+..+++ ++.+.|+. ++...|.... ..+++++|+..+++++...|+++.++..+|.
T Consensus 78 ~~~~e~al~~~~~Ge~~~l~i~p~~--ayg~~g~~~~~i~~~~~l~f~~~L~~~~~A~~~~~~a~~~~p~~a~~~~~~g~ 155 (336)
T 1p5q_A 78 PYGLERAIQRMEKGEHSIVYLKPSY--AFGSVGKEKFQIPPNAELKYELHLKSFEKAKESWEMNSEEKLEQSTIVKERGT 155 (336)
T ss_dssp CHHHHHHHTTCCTTCEEEEEECTTT--TTTTTCBGGGTBCSSCCEEEEEEEEEEECCCCGGGCCHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHhcCCCCCeEEEEECCcc--ccCcCCCCccCCCCCCeEEEEEEEeecccccchhcCCHHHHHHHHHHHHHHHH
Confidence 4568888888888 88888886 3334443322 4567788999999988889999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHH
Q 045024 135 LQLHHKKWSEAVQSLQHAIRGYPTS---------------PHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLE 199 (1173)
Q Consensus 135 ~~~~~g~~~~A~~~l~~al~~~p~~---------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~ 199 (1173)
+++..|++++|+..|++++.++|.+ ..++.++|.+|...|++++|+..|+++++++|+++.+++.
T Consensus 156 ~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~ 235 (336)
T 1p5q_A 156 VYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSR 235 (336)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHH
Confidence 9999999999999999999999998 6999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHH
Q 045024 200 SGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLASGLLGLAK 243 (1173)
Q Consensus 200 la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~l~~ 243 (1173)
+|.+|..+|++++|+..|+++++++|++..++..++.++..+++
T Consensus 236 lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~ 279 (336)
T 1p5q_A 236 RGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRR 279 (336)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999988877
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=4.2e-13 Score=163.81 Aligned_cols=195 Identities=12% Similarity=0.065 Sum_probs=178.2
Q ss_pred HHHccCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCC----------HHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 045024 32 LWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSID----------TQRAIKCYQRAVSLSPDDSVSGEALCEL 101 (1173)
Q Consensus 32 ~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~----------~~eA~~~~~~al~~~p~~~~a~~~La~~ 101 (1173)
....++..++|+..+++++..+|++..+|+.++.++.. .|+ +++++..++++++.+|++..+|...+.+
T Consensus 38 ~~~~~~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~-l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~ 116 (567)
T 1dce_A 38 KRQAGELDESVLELTSQILGANPDFATLWNCRREVLQH-LETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWL 116 (567)
T ss_dssp HHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHh-cccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 34455545899999999999999999999999999999 888 9999999999999999999999999999
Q ss_pred HHHCC--CHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-----
Q 045024 102 LEHGG--KESLEVVVCREASDKSPRAFWAFRRLGYLQLHHK-KWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRL----- 173 (1173)
Q Consensus 102 ~~~~g--~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g-~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~----- 173 (1173)
+...| +++++++.++++++.+|++..+|...+.+....| .+++++++++++++.+|.+..+|..++.++...
T Consensus 117 l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~ 196 (567)
T 1dce_A 117 LSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPD 196 (567)
T ss_dssp HHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCC
T ss_pred HHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccc
Confidence 99999 6799999999999999999999999999999999 999999999999999999999999999999885
Q ss_pred ---------CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH------------HHHHHHHHHhhcCCC
Q 045024 174 ---------GMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRK------------GVEQFQLALKISSEN 227 (1173)
Q Consensus 174 ---------g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~------------A~~~~~~al~~~p~~ 227 (1173)
+.++++++.+.+++..+|++..+|+.++.++...+++++ |+..|.+++.++|..
T Consensus 197 ~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~f~~~i~~~~~~ 271 (567)
T 1dce_A 197 SGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDVLCCVHVSREEACLSVCFSRPLTVGSRM 271 (567)
T ss_dssp SSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSCEEEEEEETTTTEEEEEEEEEECTTBTT
T ss_pred ccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccceeeeeeccCCceEEEEeccceeccccc
Confidence 568999999999999999999999999999999988766 556677777777653
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=99.43 E-value=7.2e-13 Score=147.51 Aligned_cols=182 Identities=14% Similarity=0.004 Sum_probs=148.6
Q ss_pred CCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHH
Q 045024 54 PQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLG 133 (1173)
Q Consensus 54 p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la 133 (1173)
|.++..+..+|..+.. .|++++|+..|+++++.+|++..++..+|.++...|++++|+..++++++.+|+++.+++.+|
T Consensus 1 p~~a~~~~~~g~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg 79 (281)
T 2c2l_A 1 SPSAQELKEQGNRLFV-GRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 79 (281)
T ss_dssp CCCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 5678899999999999 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHH
Q 045024 134 YLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKG 213 (1173)
Q Consensus 134 ~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A 213 (1173)
.++...|++++|+..|+++++++|++...+...+.... +..++...........|.+......++.++ .|++++|
T Consensus 80 ~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~i~~~l~~l~--~~~~~~A 154 (281)
T 2c2l_A 80 QCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSAL---RIAKKKRWNSIEERRIHQESELHSYLTRLI--AAERERE 154 (281)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHH---HHHHHHHHHHHHHTCCCCCCHHHHHHHHHH--HHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHH---HHHHHHHHHHHHHHHHhhhHHHHHHHHHHH--HHHHHHH
Confidence 99999999999999999999998865322221222222 122233333334456677777777777765 7999999
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHHHHHHH
Q 045024 214 VEQFQLALKISSENVSAHYGLASGLLGL 241 (1173)
Q Consensus 214 ~~~~~~al~~~p~~~~a~~~la~~~~~l 241 (1173)
++.++++++.+|++......+...+...
T Consensus 155 ~~~~~~al~~~p~~~~~~~~l~~~~~~~ 182 (281)
T 2c2l_A 155 LEECQRNHEGHEDDGHIRAQQACIEAKH 182 (281)
T ss_dssp HTTTSGGGTTTSCHHHHTHHHHHHHHHH
T ss_pred HHHHHhhhccccchhhhhhHHHHHHHHH
Confidence 9999999999998876665555544443
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=3.2e-13 Score=164.90 Aligned_cols=191 Identities=11% Similarity=0.057 Sum_probs=176.3
Q ss_pred ChHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCc---------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccC
Q 045024 2 DEKGALLLQLEDSLEANPDDPSLHLDLGLHLWENSES---------KEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSI 72 (1173)
Q Consensus 2 d~~~aAi~~l~~al~~~P~~~~~~~~lg~~~~~~~~~---------~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g 72 (1173)
++..+|++.+.+++..+|++..+|+.++.++...+++ +++++..++++++.+|++..+|+.++.++.. .|
T Consensus 43 ~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~-l~ 121 (567)
T 1dce_A 43 ELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSR-LP 121 (567)
T ss_dssp CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT-CS
T ss_pred CCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cc
Confidence 3455679999999999999999999999999888764 8999999999999999999999999999999 99
Q ss_pred --CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHc----------
Q 045024 73 --DTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGG-KESLEVVVCREASDKSPRAFWAFRRLGYLQLHH---------- 139 (1173)
Q Consensus 73 --~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~~g-~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~---------- 139 (1173)
+++++++.++++++.+|.+..+|...+.+....| .++++++++.++++.+|.+..+|..++.++...
T Consensus 122 ~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~ 201 (567)
T 1dce_A 122 EPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQG 201 (567)
T ss_dssp SCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCC
T ss_pred cccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccccc
Confidence 7799999999999999999999999999999999 899999999999999999999999999999885
Q ss_pred ----CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH------------HHHHHHHHHHhCCCC
Q 045024 140 ----KKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSA------------AIKSYGRAIELDDTS 193 (1173)
Q Consensus 140 ----g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~------------A~~~~~~al~~~p~~ 193 (1173)
+.++++++.+++++..+|++..+|+.++.++...+++++ |+..|.+++.++|..
T Consensus 202 ~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~f~~~i~~~~~~ 271 (567)
T 1dce_A 202 RLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDVLCCVHVSREEACLSVCFSRPLTVGSRM 271 (567)
T ss_dssp SSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSCEEEEEEETTTTEEEEEEEEEECTTBTT
T ss_pred cccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccceeeeeeccCCceEEEEeccceeccccc
Confidence 668999999999999999999999999999999998766 566677777777653
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.42 E-value=1.1e-12 Score=148.18 Aligned_cols=201 Identities=13% Similarity=0.113 Sum_probs=166.1
Q ss_pred ccCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHH
Q 045024 35 NSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVV 114 (1173)
Q Consensus 35 ~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~~g~~~~A~~~ 114 (1173)
.++ +++|..+++++.+..+.. .+.. .+++++|...|.++ +.+|...|++++|+..
T Consensus 4 ~~~-~~eA~~~~~~a~k~~~~~---------~~~~-~~~~~~A~~~~~~a--------------~~~~~~~g~~~~A~~~ 58 (307)
T 2ifu_A 4 AQK-ISEAHEHIAKAEKYLKTS---------FMKW-KPDYDSAASEYAKA--------------AVAFKNAKQLEQAKDA 58 (307)
T ss_dssp HHH-HHHHHHHHHHHHHHHCCC---------SSSC-SCCHHHHHHHHHHH--------------HHHHHHTTCHHHHHHH
T ss_pred cch-HHHHHHHHHHHHHHcccc---------ccCC-CCCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHH
Confidence 344 899999999998776642 1222 58899999999886 5688899999999999
Q ss_pred HHHHHhhCCC------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--C----HHHHHHHHHHHHHcCCHHHHHHH
Q 045024 115 CREASDKSPR------AFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPT--S----PHLWEALGLAYHRLGMFSAAIKS 182 (1173)
Q Consensus 115 ~~~al~~~p~------~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~--~----~~~~~~la~~~~~~g~~~~A~~~ 182 (1173)
|.++++..+. ...++..+|.+|..+|++++|+..|++++.+.+. + ..++..+|.+|.. |++++|+..
T Consensus 59 ~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~ 137 (307)
T 2ifu_A 59 YLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHL 137 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHH
Confidence 9999887653 2568899999999999999999999999987542 2 4678899999999 999999999
Q ss_pred HHHHHHhCCCC------hHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhhcHHHHHH
Q 045024 183 YGRAIELDDTS------IFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLASGLLGLAKQCINLGAFRWGAS 256 (1173)
Q Consensus 183 ~~~al~~~p~~------~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~l~~~~~a~g~~~~A~~ 256 (1173)
|++++++.|.. ..++..+|.++..+|++++|+..|++++++.|++.. ....+..+...+..+...|++++|+.
T Consensus 138 ~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~~g~~~~~~g~~~~A~~ 216 (307)
T 2ifu_A 138 YQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMEN-YPTCYKKCIAQVLVQLHRADYVAAQK 216 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCC-hhHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 99999987653 567889999999999999999999999998776543 33555567777777777888888888
Q ss_pred HHHHHH
Q 045024 257 LLEDAC 262 (1173)
Q Consensus 257 ~l~~Al 262 (1173)
.+++++
T Consensus 217 ~~~~al 222 (307)
T 2ifu_A 217 CVRESY 222 (307)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 888877
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=99.41 E-value=6.2e-13 Score=131.38 Aligned_cols=118 Identities=16% Similarity=-0.035 Sum_probs=72.5
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 045024 80 CYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTS 159 (1173)
Q Consensus 80 ~~~~al~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~ 159 (1173)
.|+++++.+|++...++.+|..+...|++++|+..|++++..+|+++.++..+|.++...|++++|+..|++++.++|++
T Consensus 6 ~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 85 (142)
T 2xcb_A 6 TLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINE 85 (142)
T ss_dssp ---CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred hHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC
Confidence 45555555666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHH
Q 045024 160 PHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPL 197 (1173)
Q Consensus 160 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~ 197 (1173)
+.+++.+|.++...|++++|+..|+++++++|+++...
T Consensus 86 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 123 (142)
T 2xcb_A 86 PRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHE 123 (142)
T ss_dssp THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGH
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchH
Confidence 66666666666666666666666666666666555443
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.41 E-value=4.2e-13 Score=146.17 Aligned_cols=193 Identities=9% Similarity=-0.068 Sum_probs=170.0
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHH-------HHHHHHccCcHHHHHHHHHHHHHhCCCCH--------------------
Q 045024 5 GALLLQLEDSLEANPDDPSLHLDL-------GLHLWENSESKEKAAEHFVIAAKLNPQNA-------------------- 57 (1173)
Q Consensus 5 ~aAi~~l~~al~~~P~~~~~~~~l-------g~~~~~~~~~~~~A~~~~~~al~~~p~~~-------------------- 57 (1173)
..|.+.|.+++..+|+..++|..+ +.++..... +.+++..+.+.+.+.|...
T Consensus 23 ~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r-~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~~v~~r 101 (282)
T 4f3v_A 23 ARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWY-SRRNFGQLSGSVQISMSTLNARIAIGGLYGDITYPVTSP 101 (282)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHH-TGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEEECSSH
T ss_pred HHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHH-HHHHHHHHHHHhcCChhhhhhhhccCCcccccccccCCH
Confidence 346999999999999999999999 899988887 7999999999999777643
Q ss_pred -HHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc--HHHHHHHHH
Q 045024 58 -VAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRA--FWAFRRLGY 134 (1173)
Q Consensus 58 -~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~--~~a~~~la~ 134 (1173)
++...++.++.. .|++++|.+.|+.++...|++. +.+.+|.++...+++++|+..|+++....+.. ..+++.+|.
T Consensus 102 ~dl~LayA~~L~~-~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~ 179 (282)
T 4f3v_A 102 LAITMGFAACEAA-QGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGV 179 (282)
T ss_dssp HHHHHHHHHHHHH-HTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHH-CCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHH
Confidence 445568899999 9999999999999999999888 99999999999999999999999887653221 458999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhC--CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHH
Q 045024 135 LQLHHKKWSEAVQSLQHAIRGY--PT-SPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESG 201 (1173)
Q Consensus 135 ~~~~~g~~~~A~~~l~~al~~~--p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la 201 (1173)
++..+|++++|+..|++++... |. .+++++.+|.++..+|+.++|...|++++..+|+ ..+...+.
T Consensus 180 al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~ 248 (282)
T 4f3v_A 180 AAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALK 248 (282)
T ss_dssp HHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHh
Confidence 9999999999999999998654 55 6679999999999999999999999999999999 77665554
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.38 E-value=7.5e-12 Score=120.47 Aligned_cols=115 Identities=17% Similarity=0.175 Sum_probs=88.7
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 045024 124 RAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNI 203 (1173)
Q Consensus 124 ~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~ 203 (1173)
..+..+..+|..++..|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++++|+++.+++.+|.+
T Consensus 2 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 81 (126)
T 3upv_A 2 MKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATA 81 (126)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 34566777788888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHcCChHHHHHHHHHHHhhc------CCCHHHHHHHHHHH
Q 045024 204 FLMLGNFRKGVEQFQLALKIS------SENVSAHYGLASGL 238 (1173)
Q Consensus 204 ~~~~g~~~~A~~~~~~al~~~------p~~~~a~~~la~~~ 238 (1173)
+..+|++++|+..|+++++.+ |++..++..+..+.
T Consensus 82 ~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~ 122 (126)
T 3upv_A 82 QIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKAS 122 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHH
Confidence 888888888888888888877 66666655555443
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.35 E-value=1.2e-11 Score=118.94 Aligned_cols=114 Identities=11% Similarity=-0.014 Sum_probs=66.1
Q ss_pred CHHHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 045024 21 DPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCE 100 (1173)
Q Consensus 21 ~~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~ 100 (1173)
.+..++.+|..++..|+ +++|+..|+++++.+|+++.++..+|.++.. .|++++|+..|+++++++|+++.+++.+|.
T Consensus 3 ~a~~~~~~g~~~~~~~~-~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 80 (126)
T 3upv_A 3 KAEEARLEGKEYFTKSD-WPNAVKAYTEMIKRAPEDARGYSNRAAALAK-LMSFPEAIADCNKAIEKDPNFVRAYIRKAT 80 (126)
T ss_dssp HHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHhCCCChHHHHHHHHHHHH-hcCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 34555555665555554 5666666666666666666666666666666 666666666666666666655555555555
Q ss_pred HHHHCCCHHHHHHHHHHHHhhC------CCcHHHHHHHHHHH
Q 045024 101 LLEHGGKESLEVVVCREASDKS------PRAFWAFRRLGYLQ 136 (1173)
Q Consensus 101 ~~~~~g~~~~A~~~~~~al~~~------p~~~~a~~~la~~~ 136 (1173)
++...|++++|+..|+++++.+ |++..++..++.+.
T Consensus 81 ~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~ 122 (126)
T 3upv_A 81 AQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKAS 122 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHH
Confidence 5555555555555555555555 55555554444443
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.35 E-value=6e-12 Score=129.10 Aligned_cols=128 Identities=16% Similarity=0.254 Sum_probs=97.3
Q ss_pred HHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH-HHHcCCH--HHH
Q 045024 103 EHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLA-YHRLGMF--SAA 179 (1173)
Q Consensus 103 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~-~~~~g~~--~~A 179 (1173)
...|++++|+..++++++.+|+++.++..+|.++...|++++|+..|++++..+|+++.++..+|.+ +...|++ ++|
T Consensus 21 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A 100 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQT 100 (177)
T ss_dssp C-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHH
T ss_pred hhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHH
Confidence 3456777777777777777777777777788888888888888888888888888777788888887 6777887 888
Q ss_pred HHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCHHH
Q 045024 180 IKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSA 230 (1173)
Q Consensus 180 ~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a 230 (1173)
+..|+++++.+|++..+++.+|.++...|++++|+..|+++++.+|++...
T Consensus 101 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 151 (177)
T 2e2e_A 101 RAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINR 151 (177)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccH
Confidence 888888888888888888888888888888888888888888887776543
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=99.35 E-value=2.7e-11 Score=128.05 Aligned_cols=131 Identities=16% Similarity=0.080 Sum_probs=91.1
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 045024 95 GEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLG 174 (1173)
Q Consensus 95 ~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g 174 (1173)
++.+|..+...|++++|+..|++++ +| ++.++..+|.++...|++++|+..|++++..+|+++.++..+|.++...|
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~ 85 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ--DP-HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTE 85 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS--SC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc--CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcc
Confidence 4556666666666666666666664 22 45666667777777777777777777777777777777777777777777
Q ss_pred CHHHHHHHHHHHHHhCCCCh----------------HHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCH
Q 045024 175 MFSAAIKSYGRAIELDDTSI----------------FPLLESGNIFLMLGNFRKGVEQFQLALKISSENV 228 (1173)
Q Consensus 175 ~~~~A~~~~~~al~~~p~~~----------------~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 228 (1173)
++++|+..|+++++..|.+. .+++.+|.++...|++++|+..|+++++.+|++.
T Consensus 86 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~ 155 (213)
T 1hh8_A 86 KYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPR 155 (213)
T ss_dssp CHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGG
T ss_pred cHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcccc
Confidence 77777777777777666555 7777777777777888888877877777777653
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=99.35 E-value=2.2e-11 Score=128.69 Aligned_cols=131 Identities=11% Similarity=0.116 Sum_probs=85.6
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Q 045024 59 AFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLH 138 (1173)
Q Consensus 59 a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~ 138 (1173)
.++.+|..+.. .|++++|+..|++++ +| ++.++..+|.++...|++++|+..|+++++.+|+++.++..+|.++..
T Consensus 8 ~~~~~g~~~~~-~~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 8 SLWNEGVLAAD-KKDWKGALDAFSAVQ--DP-HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHH-TTCHHHHHHHHHTSS--SC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-hCCHHHHHHHHHHHc--CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHH
Confidence 34555666666 666666666666653 22 455566666666666666666666666666666666666666666666
Q ss_pred cCCHHHHHHHHHHHHHhCCCCH----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 045024 139 HKKWSEAVQSLQHAIRGYPTSP----------------HLWEALGLAYHRLGMFSAAIKSYGRAIELDDTS 193 (1173)
Q Consensus 139 ~g~~~~A~~~l~~al~~~p~~~----------------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 193 (1173)
.|++++|+..|+++++..|.+. .+++.+|.++...|++++|+..|+++++.+|++
T Consensus 84 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 154 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 154 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred cccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence 6666666666666666555544 777788888888888888888888888777765
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.35 E-value=6.3e-12 Score=128.93 Aligned_cols=124 Identities=12% Similarity=0.123 Sum_probs=69.9
Q ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHH-HHHcCCH--HHHHH
Q 045024 71 SIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYL-QLHHKKW--SEAVQ 147 (1173)
Q Consensus 71 ~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~-~~~~g~~--~~A~~ 147 (1173)
.|++++|+..|+++++.+|++..++..+|.++...|++++|+..|+++++.+|+++.++..+|.+ +...|++ ++|+.
T Consensus 23 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~~ 102 (177)
T 2e2e_A 23 QQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRA 102 (177)
T ss_dssp ----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHHH
T ss_pred ccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHHHH
Confidence 45555555555555555555555555555555555555555555555555555555555555555 4555555 55666
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Q 045024 148 SLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSI 194 (1173)
Q Consensus 148 ~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 194 (1173)
.+++++..+|+++.++..+|.++...|++++|+..|+++++.+|++.
T Consensus 103 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 149 (177)
T 2e2e_A 103 MIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRI 149 (177)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTS
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCc
Confidence 66666666665555666666666666666666666666666655544
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.35 E-value=1.2e-12 Score=137.20 Aligned_cols=157 Identities=13% Similarity=0.080 Sum_probs=85.4
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q 045024 39 KEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREA 118 (1173)
Q Consensus 39 ~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~a 118 (1173)
+++|.+.++......+..+..+..+|..+.. .|++++|+..|+++++..|.++..... ........
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~-------------~~~~~~~~ 85 (198)
T 2fbn_A 20 QGAKKSIYDYTDEEKVQSAFDIKEEGNEFFK-KNEINEAIVKYKEALDFFIHTEEWDDQ-------------ILLDKKKN 85 (198)
T ss_dssp --CCCSGGGCCHHHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHTTTTCTTCCCH-------------HHHHHHHH
T ss_pred ccccCchhhCCHHHHHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHhcccccchh-------------hHHHHHHH
Confidence 4445444444444444444555555555555 555555555555555555444310000 00000000
Q ss_pred HhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHH
Q 045024 119 SDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLL 198 (1173)
Q Consensus 119 l~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~ 198 (1173)
+ ...++..+|.++...|++++|+..+++++..+|+++.+++.+|.++...|++++|+..|+++++++|++..++.
T Consensus 86 ~-----~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 160 (198)
T 2fbn_A 86 I-----EISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRN 160 (198)
T ss_dssp H-----HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHH
T ss_pred H-----HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHH
Confidence 0 02556666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHHcCChHHHH
Q 045024 199 ESGNIFLMLGNFRKGV 214 (1173)
Q Consensus 199 ~la~~~~~~g~~~~A~ 214 (1173)
.++.++...++..++.
T Consensus 161 ~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 161 SYELCVNKLKEARKKD 176 (198)
T ss_dssp HHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6666666666555554
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=99.35 E-value=2.7e-11 Score=121.99 Aligned_cols=127 Identities=13% Similarity=0.125 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Q 045024 59 AFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLH 138 (1173)
Q Consensus 59 a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~ 138 (1173)
.+..+|.++.. .|++++|+..|+++++.+|.+..++..+|.++...|++++|+..++++++.+|+++.++..+|.++..
T Consensus 15 ~~~~~a~~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~ 93 (166)
T 1a17_A 15 ELKTQANDYFK-AKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMA 93 (166)
T ss_dssp HHHHHHHHHHH-TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-ccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 44444444444 45555555555554444444444444444444444444444444444444444444444444444444
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHH--HHHHHHcCCHHHHHHHHHHH
Q 045024 139 HKKWSEAVQSLQHAIRGYPTSPHLWEAL--GLAYHRLGMFSAAIKSYGRA 186 (1173)
Q Consensus 139 ~g~~~~A~~~l~~al~~~p~~~~~~~~l--a~~~~~~g~~~~A~~~~~~a 186 (1173)
.|++++|+..|++++..+|.+..++..+ +..+...|++++|+..+.++
T Consensus 94 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 94 LGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 4444444444444444444444444222 22244444444444444443
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=99.34 E-value=3.8e-11 Score=134.36 Aligned_cols=170 Identities=5% Similarity=-0.031 Sum_probs=145.1
Q ss_pred CCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHH------HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc--
Q 045024 54 PQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSV------SGEALCELLEHGGKESLEVVVCREASDKSPRA-- 125 (1173)
Q Consensus 54 p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~------a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~-- 125 (1173)
|.....+...+..+.. .|++++|+..++++++..|.... .++.+|.++...|++++|+..+++++...+..
T Consensus 72 ~~~~~~l~~~~~~~~~-~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~ 150 (293)
T 2qfc_A 72 IERKKQFKDQVIMLCK-QKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGID 150 (293)
T ss_dssp HHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSC
T ss_pred hhHHHHHHHHHHHHHH-hhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCc
Confidence 4445567788889999 99999999999999998877653 36678888999999999999999999765443
Q ss_pred ----HHHHHHHHHHHHHcCCHHHHHHHHHHHH---HhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--
Q 045024 126 ----FWAFRRLGYLQLHHKKWSEAVQSLQHAI---RGYPTSP----HLWEALGLAYHRLGMFSAAIKSYGRAIELDDT-- 192 (1173)
Q Consensus 126 ----~~a~~~la~~~~~~g~~~~A~~~l~~al---~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-- 192 (1173)
..++..+|.+|...|++++|+..|++++ +..|++. .++.++|.+|...|++++|+..+++++++.+.
T Consensus 151 ~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~ 230 (293)
T 2qfc_A 151 VYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRIN 230 (293)
T ss_dssp TTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcC
Confidence 5689999999999999999999999999 4566543 68899999999999999999999999987533
Q ss_pred ----ChHHHHHHHHHHHHcCChHHH-HHHHHHHHhhc
Q 045024 193 ----SIFPLLESGNIFLMLGNFRKG-VEQFQLALKIS 224 (1173)
Q Consensus 193 ----~~~a~~~la~~~~~~g~~~~A-~~~~~~al~~~ 224 (1173)
...+++.+|.+|..+|++++| ..+|++++.+.
T Consensus 231 ~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~ 267 (293)
T 2qfc_A 231 SMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp BCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 267889999999999999999 78899988753
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=99.34 E-value=2.7e-09 Score=128.16 Aligned_cols=208 Identities=8% Similarity=-0.110 Sum_probs=150.4
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHhhhhhhhhhHHHHHHHHHHHhhcCCCHHHHHHHHHhhcccHHHHH
Q 045024 326 SSKSSYQRALYLAPWQANIYTDIAITSDLIYSLNEAYGHYQSAWHVSEKMALGALLLEGDNCQFWVTLGCLSNYNGLKQH 405 (1173)
Q Consensus 326 ~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~A~k~~~~al~~~p~~~~~~~~Lg~~~~~~~~a~~ 405 (1173)
.....|++++...|..+.+|...+..+...|+.++| ...+.+++.. |.+...|...+...........
T Consensus 197 Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~a-----------r~i~erAi~~-P~~~~l~~~y~~~~e~~~~~~~ 264 (493)
T 2uy1_A 197 RMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKA-----------KKVVERGIEM-SDGMFLSLYYGLVMDEEAVYGD 264 (493)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHH-----------HHHHHHHHHH-CCSSHHHHHHHHHTTCTHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHH-----------HHHHHHHHhC-CCcHHHHHHHHhhcchhHHHHH
Confidence 466899999999999999999999998888888776 5667889999 9998888776654221111111
Q ss_pred HHHHHH--h-------cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhHHHHhHHHHHHh-cCCHHHHHHH
Q 045024 406 ALIRGL--Q-------LDVSLADAWAHIGKLYGEVGEKKLARQAFDSARSIDPSLALPWAGMSADVQAS-ESLVDDAFES 475 (1173)
Q Consensus 406 a~~kal--~-------l~p~~~~a~~~Lg~~y~~~g~~e~A~~~f~~al~~~P~~~~a~~~l~a~~~~~-~g~~~eA~~~ 475 (1173)
.+...+ . ..+....+|...+....+.++.+.|...|+++ ...+.....|... +..-.. .++.+.|..+
T Consensus 265 l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~-A~lE~~~~~d~~~ar~i 342 (493)
T 2uy1_A 265 LKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYC-AFIEYYATGSRATPYNI 342 (493)
T ss_dssp HHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHH-HHHHHHHHCCSHHHHHH
T ss_pred HHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHH-HHHHHHHCCChHHHHHH
Confidence 111110 0 01123467888999988899999999999999 4333344566552 323333 4479999999
Q ss_pred HHHHHhcCCc-hHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 045024 476 CLRAVQILPL-AEFQIGLAKLAKLSGHLSSSQVFGAIQQAIQRGPHYPESHNLYGLVCEARSDYQAAVVSYRLARYAIS 553 (1173)
Q Consensus 476 ~~~al~~~p~-~~~~~~la~l~~~~g~~~~~~A~~~l~~al~~~P~~~~a~~~lg~i~~~~g~~~~A~~~~~kAl~l~~ 553 (1173)
|+.+++..|. ++....++.+....|+ .+.|...++++ +.....|......-...|+.+.+..++++++..+.
T Consensus 343 fe~al~~~~~~~~~~~~yid~e~~~~~--~~~aR~l~er~----~k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~~~~ 415 (493)
T 2uy1_A 343 FSSGLLKHPDSTLLKEEFFLFLLRIGD--EENARALFKRL----EKTSRMWDSMIEYEFMVGSMELFRELVDQKMDAIK 415 (493)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHTC--HHHHHHHHHHS----CCBHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHH----HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhc
Confidence 9999998885 5555556666666665 45777777776 45678888888888889999999999999987665
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.34 E-value=1.8e-12 Score=135.91 Aligned_cols=129 Identities=12% Similarity=-0.003 Sum_probs=101.7
Q ss_pred HhCCCCHHHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCCCH----------------HHHHHHHHHHHHccCCHHHHHH
Q 045024 16 EANPDDPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNA----------------VAFRYLGHYYTRFSIDTQRAIK 79 (1173)
Q Consensus 16 ~~~P~~~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~----------------~a~~~lg~~~~~~~g~~~eA~~ 79 (1173)
...+..+..+..+|..++..++ +++|+..|++++...|.++ .++..+|.++.. .|++++|+.
T Consensus 32 ~~~~~~~~~~~~~g~~~~~~~~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~-~~~~~~A~~ 109 (198)
T 2fbn_A 32 EEKVQSAFDIKEEGNEFFKKNE-INEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNK-NKDYPKAID 109 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHH-TTCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHH-hcCHHHHHH
Confidence 3344567789999999999987 9999999999999999887 777778888888 888888888
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHH
Q 045024 80 CYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAV 146 (1173)
Q Consensus 80 ~~~~al~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~ 146 (1173)
.++++++.+|++..+++.+|.++...|++++|+..|+++++.+|+++.++..++.++...++..++.
T Consensus 110 ~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 110 HASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARKKD 176 (198)
T ss_dssp HHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888777777777777777777777777777777777777777777777777777766666655
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=99.33 E-value=3.7e-11 Score=121.00 Aligned_cols=132 Identities=11% Similarity=0.066 Sum_probs=110.2
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 045024 92 SVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYH 171 (1173)
Q Consensus 92 ~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~ 171 (1173)
...+..+|..+...|++++|+..|++++..+|.++.++..+|.++...|++++|+..+++++..+|.++.++..+|.++.
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 34578888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HcCCHHHHHHHHHHHHHhCCCChHHHHH--HHHHHHHcCChHHHHHHHHHHHhh
Q 045024 172 RLGMFSAAIKSYGRAIELDDTSIFPLLE--SGNIFLMLGNFRKGVEQFQLALKI 223 (1173)
Q Consensus 172 ~~g~~~~A~~~~~~al~~~p~~~~a~~~--la~~~~~~g~~~~A~~~~~~al~~ 223 (1173)
..|++++|+..|+++++.+|++..++.. ++..+...|++++|+..+++....
T Consensus 93 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 146 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSV 146 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHH
Confidence 8888888888888888888888777744 444477788888888888876553
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=99.32 E-value=5e-11 Score=133.38 Aligned_cols=170 Identities=11% Similarity=0.061 Sum_probs=145.8
Q ss_pred CCCCHHHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCC
Q 045024 18 NPDDPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNA------VAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDD 91 (1173)
Q Consensus 18 ~P~~~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~------~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~ 91 (1173)
+|+....+...+..+...++ +++|+..+.++++..|... ..++.+|.++.. .|++++|+..|+++++..+..
T Consensus 71 ~~~~~~~l~~~~~~~~~~~~-y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~A~~~~~~al~~~~~~ 148 (293)
T 2qfc_A 71 DIERKKQFKDQVIMLCKQKR-YKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLK-KVDYEYCILELKKLLNQQLTG 148 (293)
T ss_dssp HHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHT-SSCHHHHHHHHHHHHTTCCCS
T ss_pred chhHHHHHHHHHHHHHHhhh-HHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHhcC
Confidence 34455667788888988987 9999999999999888764 346778999999 999999999999999876543
Q ss_pred ------HHHHHHHHHHHHHCCCHHHHHHHHHHHH---hhCCCc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 045024 92 ------SVSGEALCELLEHGGKESLEVVVCREAS---DKSPRA----FWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPT 158 (1173)
Q Consensus 92 ------~~a~~~La~~~~~~g~~~~A~~~~~~al---~~~p~~----~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~ 158 (1173)
..++..+|.+|...|++++|+.+|++++ +..|++ ..+++.+|.+|..+|++++|+..+++++.+.+.
T Consensus 149 ~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~ 228 (293)
T 2qfc_A 149 IDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCR 228 (293)
T ss_dssp SCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 4579999999999999999999999998 556653 268999999999999999999999999987542
Q ss_pred ------CHHHHHHHHHHHHHcCCHHHH-HHHHHHHHHh
Q 045024 159 ------SPHLWEALGLAYHRLGMFSAA-IKSYGRAIEL 189 (1173)
Q Consensus 159 ------~~~~~~~la~~~~~~g~~~~A-~~~~~~al~~ 189 (1173)
...++..+|.+|...|++++| ...|++++.+
T Consensus 229 ~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 229 INSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp TTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 277899999999999999999 7889999864
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.32 E-value=2e-11 Score=116.99 Aligned_cols=115 Identities=19% Similarity=0.086 Sum_probs=48.6
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 045024 95 GEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLG 174 (1173)
Q Consensus 95 ~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g 174 (1173)
+..+|..+...|++++|+..+++++...|+++.++..+|.++...|++++|+..+++++..+|+++.++..+|.++...|
T Consensus 15 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (131)
T 2vyi_A 15 LKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSSLN 94 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHHHhC
Confidence 33344444444444444444444444444444444444444444444444444444444444444444444444444444
Q ss_pred CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCC
Q 045024 175 MFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGN 209 (1173)
Q Consensus 175 ~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~ 209 (1173)
++++|+..|+++++.+|++..++..++.++...|+
T Consensus 95 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 95 KHVEAVAYYKKALELDPDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhc
Confidence 44444444444444444444444444444444433
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.32 E-value=1.6e-11 Score=117.78 Aligned_cols=120 Identities=21% Similarity=0.191 Sum_probs=69.4
Q ss_pred CCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHH
Q 045024 55 QNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGY 134 (1173)
Q Consensus 55 ~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~ 134 (1173)
.++..+..+|..+.. .|++++|+..|+++++.+|++..++..+|.++...|++++|+..+++++...|+++.++..+|.
T Consensus 10 ~~~~~~~~~~~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 88 (131)
T 2vyi_A 10 AEAERLKTEGNEQMK-VENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGL 88 (131)
T ss_dssp HHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHH-ccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHH
Confidence 344455555555555 5555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 045024 135 LQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGM 175 (1173)
Q Consensus 135 ~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~ 175 (1173)
++...|++++|+..++++++.+|+++.++..++.++...|+
T Consensus 89 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 89 ALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTT
T ss_pred HHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhc
Confidence 55555666666666666655555555555555555555554
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=99.31 E-value=2.8e-11 Score=122.51 Aligned_cols=116 Identities=14% Similarity=0.135 Sum_probs=103.0
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHH
Q 045024 122 SPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESG 201 (1173)
Q Consensus 122 ~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la 201 (1173)
.+.++..+..+|.++...|++++|+..|+++++.+|+++.++..+|.+|...|++++|+..|+++++++|++..+++.+|
T Consensus 7 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg 86 (164)
T 3sz7_A 7 PTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLG 86 (164)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 34567788899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCChHHHHHHHHHHHhhcCCCHHHHHHHHHH
Q 045024 202 NIFLMLGNFRKGVEQFQLALKISSENVSAHYGLASG 237 (1173)
Q Consensus 202 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~ 237 (1173)
.++..+|++++|+..|+++++++|++..+++..+..
T Consensus 87 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 122 (164)
T 3sz7_A 87 LARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLE 122 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 999999999999999999999999988766544443
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.31 E-value=2.5e-11 Score=117.04 Aligned_cols=108 Identities=13% Similarity=0.091 Sum_probs=39.5
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Q 045024 97 ALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMF 176 (1173)
Q Consensus 97 ~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~ 176 (1173)
.+|.++...|++++|+..++++++.+|++..++..+|.++...|++++|+..++++++.+|+++.++..+|.++...|++
T Consensus 21 ~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~ 100 (133)
T 2lni_A 21 NKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDY 100 (133)
T ss_dssp HHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhhH
Confidence 33333333333333333333333333333333333333333333333333333333333333333333333333333333
Q ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 045024 177 SAAIKSYGRAIELDDTSIFPLLESGNIF 204 (1173)
Q Consensus 177 ~~A~~~~~~al~~~p~~~~a~~~la~~~ 204 (1173)
++|+..|+++++.+|.+..++..++.++
T Consensus 101 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 128 (133)
T 2lni_A 101 TKAMDVYQKALDLDSSCKEAADGYQRCM 128 (133)
T ss_dssp HHHHHHHHHHHHHCGGGTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 3333333333333333333333333333
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.31 E-value=2.1e-11 Score=117.61 Aligned_cols=118 Identities=15% Similarity=0.102 Sum_probs=59.6
Q ss_pred CHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q 045024 56 NAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYL 135 (1173)
Q Consensus 56 ~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~ 135 (1173)
.+.+++.+|.++.. .|++++|+..|+++++.+|++..++..+|.++...|++++|+..++++++.+|+++.++..+|.+
T Consensus 15 ~~~~~~~~~~~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 93 (133)
T 2lni_A 15 LALMVKNKGNECFQ-KGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAA 93 (133)
T ss_dssp HHHHHHHHHHHHHH-TTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 34444455555555 55555555555555555554444555555555555555555555555555555555555555555
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 045024 136 QLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLG 174 (1173)
Q Consensus 136 ~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g 174 (1173)
+...|++++|+..|++++..+|.+..++..++.++...|
T Consensus 94 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHT
T ss_pred HHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhc
Confidence 555555555555555555555555555555555544443
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=99.28 E-value=3.1e-11 Score=122.18 Aligned_cols=101 Identities=15% Similarity=0.111 Sum_probs=40.0
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 045024 95 GEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLG 174 (1173)
Q Consensus 95 ~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g 174 (1173)
+..+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++++|+++.+++.+|.++...|
T Consensus 14 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g 93 (164)
T 3sz7_A 14 LKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARFDMA 93 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc
Confidence 33333333333333333333333333333333333333333333444444444444444444444444444444444444
Q ss_pred CHHHHHHHHHHHHHhCCCChH
Q 045024 175 MFSAAIKSYGRAIELDDTSIF 195 (1173)
Q Consensus 175 ~~~~A~~~~~~al~~~p~~~~ 195 (1173)
++++|+..|+++++++|++..
T Consensus 94 ~~~~A~~~~~~al~~~p~~~~ 114 (164)
T 3sz7_A 94 DYKGAKEAYEKGIEAEGNGGS 114 (164)
T ss_dssp CHHHHHHHHHHHHHHHSSSCC
T ss_pred CHHHHHHHHHHHHHhCCCchH
Confidence 444444444444444443333
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=99.28 E-value=1.3e-10 Score=110.22 Aligned_cols=112 Identities=24% Similarity=0.300 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q 045024 58 VAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQL 137 (1173)
Q Consensus 58 ~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~ 137 (1173)
.+++.+|.++.. .|++++|+..|+++++.+|.+..++..+|.++...|++++|+..+++++...|.++.++..+|.++.
T Consensus 10 ~~~~~~~~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 10 EAWYNLGNAYYK-QGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-cCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 344444444444 4444444444444444444444444444444444444444444444444444444444444444444
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 045024 138 HHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAY 170 (1173)
Q Consensus 138 ~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~ 170 (1173)
..|++++|+..+++++..+|+++.++..++.++
T Consensus 89 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 121 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALELDPNNAEAKQNLGNAK 121 (125)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 444444444444444444444444444444433
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=99.27 E-value=1.6e-10 Score=109.66 Aligned_cols=114 Identities=24% Similarity=0.288 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 045024 93 VSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHR 172 (1173)
Q Consensus 93 ~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~ 172 (1173)
.++..+|.++...|++++|+..+++++...|+++.++..+|.++...|++++|+..+++++..+|.++.++..+|.++..
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~ 89 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYK 89 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH
Confidence 34444455555555555555555555544444444444455555555555555555555544444444444444544444
Q ss_pred cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 045024 173 LGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLM 206 (1173)
Q Consensus 173 ~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~ 206 (1173)
.|++++|+..++++++.+|++..++..++.++..
T Consensus 90 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 123 (125)
T 1na0_A 90 QGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQK 123 (125)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh
Confidence 4555555555544444444444444444444433
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.26 E-value=9.3e-11 Score=129.34 Aligned_cols=183 Identities=9% Similarity=-0.042 Sum_probs=154.4
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q 045024 42 AAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSP--DDSVSGEALCELLEHGGKESLEVVVCREAS 119 (1173)
Q Consensus 42 A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p--~~~~a~~~La~~~~~~g~~~~A~~~~~~al 119 (1173)
|+..|++.+...+....+++.+|.++.. .|++++|++.+.+.+..+| ++.+++..++.++..+|+.+.|.+.++++.
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~-~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAI-LGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHH-HTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHH-cCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 4556666666556667788899999999 9999999999999999987 888999999999999999999999999999
Q ss_pred hhCCC------cHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 045024 120 DKSPR------AFWAFRRLGYLQLHHK--KWSEAVQSLQHAIRGYPT--SPHLWEALGLAYHRLGMFSAAIKSYGRAIEL 189 (1173)
Q Consensus 120 ~~~p~------~~~a~~~la~~~~~~g--~~~~A~~~l~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 189 (1173)
+.+|+ .......-+.+.+..| ++.+|...|+++....|+ .+..+++ ++..+|++++|.+.++.+++.
T Consensus 164 ~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln---~~~~~g~~~eAe~~L~~l~~~ 240 (310)
T 3mv2_B 164 NAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN---LHLQQRNIAEAQGIVELLLSD 240 (310)
T ss_dssp HHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH---HHHHHTCHHHHHHHHHHHHSH
T ss_pred hcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH---HHHHcCCHHHHHHHHHHHHHh
Confidence 99983 3334444455577667 999999999999888886 2333333 899999999999999988776
Q ss_pred ----------CCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCHHH
Q 045024 190 ----------DDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSA 230 (1173)
Q Consensus 190 ----------~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a 230 (1173)
+|+++.++.+++.+...+|+ +|.++++++.+.+|+++..
T Consensus 241 ~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i 289 (310)
T 3mv2_B 241 YYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFI 289 (310)
T ss_dssp HHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHH
T ss_pred cccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHH
Confidence 48899999999999999997 8999999999999999854
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=99.25 E-value=9.1e-09 Score=123.51 Aligned_cols=207 Identities=8% Similarity=-0.090 Sum_probs=146.9
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCC-HHHHHHHHHHHH
Q 045024 7 LLLQLEDSLEANPDDPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSID-TQRAIKCYQRAV 85 (1173)
Q Consensus 7 Ai~~l~~al~~~P~~~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~-~~eA~~~~~~al 85 (1173)
|...|++++...|. ++ ++.+...|++++...| +.+.|......... .++ .+.....|++++
T Consensus 14 aR~vyer~l~~~P~---------------~~-~e~~~~iferal~~~p-s~~LW~~Y~~f~~~-~~~~~~~i~~~fe~al 75 (493)
T 2uy1_A 14 PSAIMEHARRLYMS---------------KD-YRSLESLFGRCLKKSY-NLDLWMLYIEYVRK-VSQKKFKLYEVYEFTL 75 (493)
T ss_dssp HHHHHHHHHHHHHT---------------TC-HHHHHHHHHHHSTTCC-CHHHHHHHHHHHHH-HC----CTHHHHHHHH
T ss_pred HHHHHHHHHHHCCC---------------CC-HHHHHHHHHHHhccCC-CHHHHHHHHHHHHH-hCchHHHHHHHHHHHH
Confidence 46677777777765 55 9999999999999888 78899888888888 664 456778889888
Q ss_pred hh---CCCCHHHHHHHHHHHH----HCCCHHHHHHHHHHHHhhCCCcHHH-HHHHHHHH-------------HHcCCHHH
Q 045024 86 SL---SPDDSVSGEALCELLE----HGGKESLEVVVCREASDKSPRAFWA-FRRLGYLQ-------------LHHKKWSE 144 (1173)
Q Consensus 86 ~~---~p~~~~a~~~La~~~~----~~g~~~~A~~~~~~al~~~p~~~~a-~~~la~~~-------------~~~g~~~~ 144 (1173)
.. +|.+...|...+..+. .+|+.+.+..+|++++...+.+..- |......- ...+.+..
T Consensus 76 ~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ 155 (493)
T 2uy1_A 76 GQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQS 155 (493)
T ss_dssp HHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred HHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHH
Confidence 74 6788888888887754 3467889999999999864333222 22111111 11234455
Q ss_pred HHHHHHHHHHhCCC-CHHHHHHHHHHHHHc--CC-----HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHH
Q 045024 145 AVQSLQHAIRGYPT-SPHLWEALGLAYHRL--GM-----FSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQ 216 (1173)
Q Consensus 145 A~~~l~~al~~~p~-~~~~~~~la~~~~~~--g~-----~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~ 216 (1173)
|...++.+....+. +...|......-... |- .+.....|++++...|..+..|+..+..+...|+.++|...
T Consensus 156 ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i 235 (493)
T 2uy1_A 156 SFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKV 235 (493)
T ss_dssp HHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 56566655544332 444565544443321 11 34577899999999999999999999999999999999999
Q ss_pred HHHHHhhcCCCHHHHH
Q 045024 217 FQLALKISSENVSAHY 232 (1173)
Q Consensus 217 ~~~al~~~p~~~~a~~ 232 (1173)
|++++.. |.+...+.
T Consensus 236 ~erAi~~-P~~~~l~~ 250 (493)
T 2uy1_A 236 VERGIEM-SDGMFLSL 250 (493)
T ss_dssp HHHHHHH-CCSSHHHH
T ss_pred HHHHHhC-CCcHHHHH
Confidence 9999999 98876554
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.25 E-value=4.2e-11 Score=115.72 Aligned_cols=102 Identities=19% Similarity=0.254 Sum_probs=85.4
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh-------HHH
Q 045024 125 AFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSI-------FPL 197 (1173)
Q Consensus 125 ~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-------~a~ 197 (1173)
...++..+|..++..|+|++|+..|+++++++|+++.++.++|.+|..+|++++|+..|+++++++|++. .++
T Consensus 7 ~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~ 86 (127)
T 4gcn_A 7 AAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAM 86 (127)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHH
Confidence 3456778888888888888888888888888888888888888888888888888888888888877642 467
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhhcCC
Q 045024 198 LESGNIFLMLGNFRKGVEQFQLALKISSE 226 (1173)
Q Consensus 198 ~~la~~~~~~g~~~~A~~~~~~al~~~p~ 226 (1173)
..+|.++..+|++++|++.|++++...|+
T Consensus 87 ~~lg~~~~~~~~~~~A~~~~~kal~~~~~ 115 (127)
T 4gcn_A 87 SRAGNAFQKQNDLSLAVQWFHRSLSEFRD 115 (127)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCcC
Confidence 78888888999999999999999888775
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=99.25 E-value=1.4e-10 Score=112.92 Aligned_cols=106 Identities=20% Similarity=0.276 Sum_probs=87.5
Q ss_pred hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHH
Q 045024 121 KSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLES 200 (1173)
Q Consensus 121 ~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l 200 (1173)
.+|.++..+..+|..+...|++++|+..|++++..+|+++.++..+|.++...|++++|+..++++++.+|+++.+++.+
T Consensus 4 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 83 (137)
T 3q49_B 4 MKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFL 83 (137)
T ss_dssp --CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHH
Confidence 35667778888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHcCChHHHHHHHHHHHhhcCC
Q 045024 201 GNIFLMLGNFRKGVEQFQLALKISSE 226 (1173)
Q Consensus 201 a~~~~~~g~~~~A~~~~~~al~~~p~ 226 (1173)
|.++...|++++|+..|+++++.+|+
T Consensus 84 ~~~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 84 GQCQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHChh
Confidence 88888888888888888888888776
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=99.25 E-value=9e-11 Score=131.28 Aligned_cols=164 Identities=5% Similarity=-0.037 Sum_probs=137.5
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHH------HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc------HH
Q 045024 60 FRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVS------GEALCELLEHGGKESLEVVVCREASDKSPRA------FW 127 (1173)
Q Consensus 60 ~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a------~~~La~~~~~~g~~~~A~~~~~~al~~~p~~------~~ 127 (1173)
+...+..+.. .|++++|...++++++..+..+.. +..+|.++...|++++|+..+++++...+.. ..
T Consensus 78 l~~~i~~~~~-~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 3u3w_A 78 FKDQVIMLCK-QKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHH-TTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHH
T ss_pred HHHHHHHHHH-HhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHH
Confidence 4445778888 999999999999999988777652 3458888888999999999999999865432 34
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh---C----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------h
Q 045024 128 AFRRLGYLQLHHKKWSEAVQSLQHAIRG---Y----PTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTS------I 194 (1173)
Q Consensus 128 a~~~la~~~~~~g~~~~A~~~l~~al~~---~----p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~ 194 (1173)
++..+|.+|...|++++|+.+|+++++. . +....++.++|.+|...|++++|+..+++++++.+.. .
T Consensus 157 ~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~ 236 (293)
T 3u3w_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHH
Confidence 7899999999999999999999999953 1 2235588999999999999999999999999876443 6
Q ss_pred HHHHHHHHHHHHcCC-hHHHHHHHHHHHhhc
Q 045024 195 FPLLESGNIFLMLGN-FRKGVEQFQLALKIS 224 (1173)
Q Consensus 195 ~a~~~la~~~~~~g~-~~~A~~~~~~al~~~ 224 (1173)
.+++.+|.++..+|+ +++|+..|++++.+.
T Consensus 237 ~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~ 267 (293)
T 3u3w_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 789999999999995 699999999998753
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=99.24 E-value=1.3e-10 Score=129.86 Aligned_cols=162 Identities=10% Similarity=0.055 Sum_probs=137.2
Q ss_pred HHHHHHHHHccCcHHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCH------H
Q 045024 26 LDLGLHLWENSESKEKAAEHFVIAAKLNPQNAV------AFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDS------V 93 (1173)
Q Consensus 26 ~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~~------a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~------~ 93 (1173)
...+..++..++ +++|...++++++..+..+. .+..+|.++.. .|++++|+.+|+++++..+... .
T Consensus 79 ~~~i~~~~~~~~-y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~Ai~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 3u3w_A 79 KDQVIMLCKQKR-YKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLK-KVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHTTC-HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTT-SSCHHHHHHHHHHHHHTCCCCSCTTHHHH
T ss_pred HHHHHHHHHHhh-HHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHHhcccccHHHHHH
Confidence 344677778887 99999999999998877665 33458999988 9999999999999999654432 3
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhh-------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------H
Q 045024 94 SGEALCELLEHGGKESLEVVVCREASDK-------SPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTS------P 160 (1173)
Q Consensus 94 a~~~La~~~~~~g~~~~A~~~~~~al~~-------~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~------~ 160 (1173)
++..+|.+|...|++++|+.+|+++++. .+....+++.+|.+|..+|++++|+..+++++++.+.. +
T Consensus 157 ~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~ 236 (293)
T 3u3w_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHH
Confidence 6899999999999999999999999852 12235688999999999999999999999999876433 7
Q ss_pred HHHHHHHHHHHHcC-CHHHHHHHHHHHHHh
Q 045024 161 HLWEALGLAYHRLG-MFSAAIKSYGRAIEL 189 (1173)
Q Consensus 161 ~~~~~la~~~~~~g-~~~~A~~~~~~al~~ 189 (1173)
.++..+|.+|...| ++++|+..|++++.+
T Consensus 237 ~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 89999999999999 579999999999875
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.24 E-value=1.6e-10 Score=127.49 Aligned_cols=186 Identities=13% Similarity=0.039 Sum_probs=156.1
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHccCcHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 045024 7 LLLQLEDSLEANPDDPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNP--QNAVAFRYLGHYYTRFSIDTQRAIKCYQRA 84 (1173)
Q Consensus 7 Ai~~l~~al~~~P~~~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p--~~~~a~~~lg~~~~~~~g~~~eA~~~~~~a 84 (1173)
|+..|++.+...+.+...++.+|.++...|+ +++|+..+.+.+..+| .+.+++..++.++.. .|+.+.|.+.++++
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~-~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~-~~r~d~A~k~l~~~ 162 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGD-LDKSLETCVEGIDNDEAEGTTELLLLAIEVALL-NNNVSTASTIFDNY 162 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTC-HHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHH-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCC-HHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHH-CCCHHHHHHHHHHH
Confidence 4667777777766777888899999999987 9999999999998887 889999999999999 99999999999999
Q ss_pred HhhCCC----CHHHHHHH--HHHHHHCC--CHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-
Q 045024 85 VSLSPD----DSVSGEAL--CELLEHGG--KESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRG- 155 (1173)
Q Consensus 85 l~~~p~----~~~a~~~L--a~~~~~~g--~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~- 155 (1173)
.+.+|+ +......+ +.+....| ++.+|...|+++....|+.......+. ++..+|++++|...++.+++.
T Consensus 163 ~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln-~~~~~g~~~eAe~~L~~l~~~~ 241 (310)
T 3mv2_B 163 TNAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN-LHLQQRNIAEAQGIVELLLSDY 241 (310)
T ss_dssp HHHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH-HHHHHTCHHHHHHHHHHHHSHH
T ss_pred HhcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH-HHHHcCCHHHHHHHHHHHHHhc
Confidence 999983 22333444 54566666 999999999999998887222222233 899999999999999988776
Q ss_pred ---------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHH
Q 045024 156 ---------YPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPL 197 (1173)
Q Consensus 156 ---------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~ 197 (1173)
+|+++.++.+++.+....|+ +|.++++++.+..|+++.+.
T Consensus 242 p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~ 290 (310)
T 3mv2_B 242 YSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIK 290 (310)
T ss_dssp HHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHH
T ss_pred ccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHH
Confidence 58899999999999999998 89999999999999998653
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=99.23 E-value=9.2e-11 Score=114.19 Aligned_cols=98 Identities=22% Similarity=0.204 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q 045024 57 AVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQ 136 (1173)
Q Consensus 57 ~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~ 136 (1173)
+..++.+|.++.. .|++++|+..|+++++.+|+++.++..+|.++...|++++|+..++++++.+|+++.+++.+|.++
T Consensus 9 ~~~~~~~g~~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 87 (137)
T 3q49_B 9 AQELKEQGNRLFV-GRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ 87 (137)
T ss_dssp HHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-hCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence 3333333333333 333333333333333333333333333333333333333333333333333333333333333333
Q ss_pred HHcCCHHHHHHHHHHHHHh
Q 045024 137 LHHKKWSEAVQSLQHAIRG 155 (1173)
Q Consensus 137 ~~~g~~~~A~~~l~~al~~ 155 (1173)
...|++++|+..|++++..
T Consensus 88 ~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 88 LEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHH
Confidence 3333333333333333333
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=99.22 E-value=8.4e-12 Score=149.06 Aligned_cols=143 Identities=13% Similarity=0.075 Sum_probs=88.1
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc---------------HHHHHHHHHHH
Q 045024 72 IDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRA---------------FWAFRRLGYLQ 136 (1173)
Q Consensus 72 g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~a~~~la~~~ 136 (1173)
+++++|+..|+++++..|.....+..+|..+...|++++|+..|+++++..|.+ ..++..+|.++
T Consensus 248 ~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~ 327 (457)
T 1kt0_A 248 KSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCY 327 (457)
T ss_dssp EEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555555555555555555555555555555555544 46666777777
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHH
Q 045024 137 LHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGV 214 (1173)
Q Consensus 137 ~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~ 214 (1173)
..+|++++|+..|++++.++|+++.+++.+|.+|..+|++++|+..|+++++++|++..++..++.++..+|++++|.
T Consensus 328 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 328 LKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777777777777777777777777777777777777777777777777777777777777776666654
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=99.22 E-value=6.6e-11 Score=116.88 Aligned_cols=112 Identities=16% Similarity=0.094 Sum_probs=93.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-------CHH-----HHHHHHHHHHHcCCHHHHHHHHHHHHHh----
Q 045024 126 FWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPT-------SPH-----LWEALGLAYHRLGMFSAAIKSYGRAIEL---- 189 (1173)
Q Consensus 126 ~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~-------~~~-----~~~~la~~~~~~g~~~~A~~~~~~al~~---- 189 (1173)
...+...|..++..|+|++|+..|+++++++|+ +.. +|.++|.++..+|++++|+..|++++++
T Consensus 11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~ 90 (159)
T 2hr2_A 11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 90 (159)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 345667777777778888888888888877777 443 8999999999999999999999999999
Q ss_pred ---CCCChHHH----HHHHHHHHHcCChHHHHHHHHHHHhhcCCCHHHHHHHHHH
Q 045024 190 ---DDTSIFPL----LESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLASG 237 (1173)
Q Consensus 190 ---~p~~~~a~----~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~ 237 (1173)
+|++..+| +++|.++..+|++++|+..|+++++++|++......+..+
T Consensus 91 ~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~ 145 (159)
T 2hr2_A 91 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERM 145 (159)
T ss_dssp CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHH
T ss_pred ccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 99999999 9999999999999999999999999999887655444333
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.22 E-value=3.3e-10 Score=106.23 Aligned_cols=112 Identities=18% Similarity=0.212 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 045024 126 FWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFL 205 (1173)
Q Consensus 126 ~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~ 205 (1173)
+..+..+|..+...|++++|+..|++++..+|+++.++..+|.++...|++++|+..++++++.+|+++.++..+|.++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 44556666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HcCChHHHHHHHHHHHhhcCCCHHHHHHHHHH
Q 045024 206 MLGNFRKGVEQFQLALKISSENVSAHYGLASG 237 (1173)
Q Consensus 206 ~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~ 237 (1173)
..|++++|+..|+++++.+|+++.++..++.+
T Consensus 84 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 115 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM 115 (118)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 66666666666666666666666655554443
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.22 E-value=7.1e-11 Score=113.05 Aligned_cols=100 Identities=17% Similarity=0.091 Sum_probs=68.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcC
Q 045024 129 FRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLG 208 (1173)
Q Consensus 129 ~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g 208 (1173)
++.+|..+...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|+++++++|+++.+++.+|.++...|
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g 99 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEH 99 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 55667777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred ChHHHHHHHHHHHhhcCCCH
Q 045024 209 NFRKGVEQFQLALKISSENV 228 (1173)
Q Consensus 209 ~~~~A~~~~~~al~~~p~~~ 228 (1173)
++++|+..|+++++.+|++.
T Consensus 100 ~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 100 NANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHHHHC------
T ss_pred CHHHHHHHHHHHHHhCcCCC
Confidence 77777777777777766543
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=99.21 E-value=1e-11 Score=148.38 Aligned_cols=143 Identities=15% Similarity=0.105 Sum_probs=131.3
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCC---------------HHHHHHHHHHHH
Q 045024 39 KEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDD---------------SVSGEALCELLE 103 (1173)
Q Consensus 39 ~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~---------------~~a~~~La~~~~ 103 (1173)
+++|+..|+.++..+|+.+.++..+|..++. .|++++|+..|+++++++|.+ ..++..+|.++.
T Consensus 250 ~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~-~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~ 328 (457)
T 1kt0_A 250 FEKAKESWEMDTKEKLEQAAIVKEKGTVYFK-GGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYL 328 (457)
T ss_dssp EECCCCGGGSCHHHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCcchhhcCHHHHHHHHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 6678888888888889999999999999999 999999999999999999998 688999999999
Q ss_pred HCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 045024 104 HGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKS 182 (1173)
Q Consensus 104 ~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 182 (1173)
..|++++|+..|+++++++|+++.+++.+|.++..+|++++|+..|+++++++|++..++..++.++...|++++|.+.
T Consensus 329 ~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~ 407 (457)
T 1kt0_A 329 KLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDRR 407 (457)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999888754
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.21 E-value=3e-10 Score=106.58 Aligned_cols=87 Identities=15% Similarity=0.176 Sum_probs=30.9
Q ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 045024 71 SIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQ 150 (1173)
Q Consensus 71 ~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~ 150 (1173)
.|++++|+..|++++..+|+++.++..+|.++...|++++|+..++++++..|+++.++..+|.++...|++++|+..++
T Consensus 17 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~ 96 (118)
T 1elw_A 17 VGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYE 96 (118)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 33333333333333333333333333333333333333333333333333333333333333333333333333333333
Q ss_pred HHHHhCC
Q 045024 151 HAIRGYP 157 (1173)
Q Consensus 151 ~al~~~p 157 (1173)
++++.+|
T Consensus 97 ~~~~~~~ 103 (118)
T 1elw_A 97 EGLKHEA 103 (118)
T ss_dssp HHHTTCT
T ss_pred HHHHcCC
Confidence 3333333
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.20 E-value=1.9e-10 Score=111.15 Aligned_cols=97 Identities=20% Similarity=0.197 Sum_probs=41.8
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc-------HHHHHHH
Q 045024 60 FRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRA-------FWAFRRL 132 (1173)
Q Consensus 60 ~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~-------~~a~~~l 132 (1173)
+..+|..++. .|++++|+..|+++++++|+++.++..+|.+|..+|++++|+..++++++++|++ ..++..+
T Consensus 11 ~~~lG~~~~~-~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l 89 (127)
T 4gcn_A 11 EKDLGNAAYK-QKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRA 89 (127)
T ss_dssp HHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHH
Confidence 3334444444 4444444444444444444444444444444444444444444444444333322 1234444
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCC
Q 045024 133 GYLQLHHKKWSEAVQSLQHAIRGYP 157 (1173)
Q Consensus 133 a~~~~~~g~~~~A~~~l~~al~~~p 157 (1173)
|.++...|++++|+..|++++...|
T Consensus 90 g~~~~~~~~~~~A~~~~~kal~~~~ 114 (127)
T 4gcn_A 90 GNAFQKQNDLSLAVQWFHRSLSEFR 114 (127)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCc
Confidence 4445555555555555555544444
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=99.20 E-value=1.6e-10 Score=120.76 Aligned_cols=155 Identities=11% Similarity=0.079 Sum_probs=92.3
Q ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh------hCCCcHHHHHHHHHHHHHcCCHHH
Q 045024 71 SIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASD------KSPRAFWAFRRLGYLQLHHKKWSE 144 (1173)
Q Consensus 71 ~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~------~~p~~~~a~~~la~~~~~~g~~~~ 144 (1173)
.|++++|...++......+....++..+|.++...|++++|+..+++++. ..|....++..+|.++...|++++
T Consensus 5 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 84 (203)
T 3gw4_A 5 AHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDA 84 (203)
T ss_dssp --CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred cccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHH
Confidence 45555555533333222223344455555555555555555555555554 222344566667777777777777
Q ss_pred HHHHHHHHHHh---CCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--C----hHHHHHHHHHHHHcCChH
Q 045024 145 AVQSLQHAIRG---YPTS----PHLWEALGLAYHRLGMFSAAIKSYGRAIELDDT--S----IFPLLESGNIFLMLGNFR 211 (1173)
Q Consensus 145 A~~~l~~al~~---~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~----~~a~~~la~~~~~~g~~~ 211 (1173)
|+..+++++.. .+++ ..++..+|.++...|++++|+..++++++..+. + ..++..+|.++...|+++
T Consensus 85 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 164 (203)
T 3gw4_A 85 ARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLL 164 (203)
T ss_dssp HHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHH
Confidence 77777776665 3322 345667777777777777777777777754321 1 234567788888888888
Q ss_pred HHHHHHHHHHhhcC
Q 045024 212 KGVEQFQLALKISS 225 (1173)
Q Consensus 212 ~A~~~~~~al~~~p 225 (1173)
+|+..+++++++..
T Consensus 165 ~A~~~~~~al~~~~ 178 (203)
T 3gw4_A 165 EAQQHWLRARDIFA 178 (203)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 88888888777644
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.19 E-value=1.1e-10 Score=111.73 Aligned_cols=94 Identities=14% Similarity=0.153 Sum_probs=35.0
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCH
Q 045024 63 LGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKW 142 (1173)
Q Consensus 63 lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~ 142 (1173)
+|..+.. .|++++|+..|+++++.+|++..+++.+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++
T Consensus 23 ~g~~~~~-~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~ 101 (121)
T 1hxi_A 23 EGLSMLK-LANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNA 101 (121)
T ss_dssp HHHHHHH-TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-cCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Confidence 3333333 333333333333333333333333333333333333333333333333333333333333333333333333
Q ss_pred HHHHHHHHHHHHhCC
Q 045024 143 SEAVQSLQHAIRGYP 157 (1173)
Q Consensus 143 ~~A~~~l~~al~~~p 157 (1173)
++|+..|+++++.+|
T Consensus 102 ~~A~~~~~~al~~~P 116 (121)
T 1hxi_A 102 NAALASLRAWLLSQP 116 (121)
T ss_dssp HHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHhCc
Confidence 333333333333333
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.19 E-value=1.8e-10 Score=116.21 Aligned_cols=117 Identities=15% Similarity=0.175 Sum_probs=91.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 045024 126 FWAFRRLGYLQLHHKKWSEAVQSLQHAIRG------------------YPTSPHLWEALGLAYHRLGMFSAAIKSYGRAI 187 (1173)
Q Consensus 126 ~~a~~~la~~~~~~g~~~~A~~~l~~al~~------------------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 187 (1173)
+..+...|..++..|+|++|+..|++++.. +|.+..++.++|.+|...|++++|+..+++++
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 445566666666677777777777766666 56667888889999999999999999999999
Q ss_pred HhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCH-HHHHHHHHHHHHHH
Q 045024 188 ELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENV-SAHYGLASGLLGLA 242 (1173)
Q Consensus 188 ~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-~a~~~la~~~~~l~ 242 (1173)
+++|+++.+++.+|.++..+|++++|+..|+++++++|+++ .+...+..+.....
T Consensus 91 ~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~ 146 (162)
T 3rkv_A 91 KREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERRA 146 (162)
T ss_dssp HHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHH
T ss_pred hcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Confidence 99999988999999999999999999999999999988887 45555555544433
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.17 E-value=4.5e-10 Score=110.50 Aligned_cols=113 Identities=18% Similarity=0.098 Sum_probs=50.8
Q ss_pred CCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHH
Q 045024 54 PQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDD---SVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFR 130 (1173)
Q Consensus 54 p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~---~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~ 130 (1173)
|.++..++.+|..+.. .|++++|+..|+++++.+|++ ..++..+|.++...|++++|+..++++++.+|+++.+++
T Consensus 25 ~~~~~~~~~~a~~~~~-~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 103 (148)
T 2dba_A 25 ASSVEQLRKEGNELFK-CGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALY 103 (148)
T ss_dssp CCCHHHHHHHHHHHHT-TTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHH
T ss_pred hHHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHH
Confidence 3344444444444444 444444444444444444443 333444444444444444444444444444444444444
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 045024 131 RLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALG 167 (1173)
Q Consensus 131 ~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la 167 (1173)
.+|.++...|++++|+..|++++..+|++..++..++
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 140 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALR 140 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHH
Confidence 4444444444444444444444444444444443333
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.16 E-value=5.6e-10 Score=109.79 Aligned_cols=117 Identities=14% Similarity=0.037 Sum_probs=71.5
Q ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 045024 88 SPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRA---FWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWE 164 (1173)
Q Consensus 88 ~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~ 164 (1173)
+|.+...+..+|..+...|++++|+..|+++++..|++ ..++..+|.++...|++++|+..+++++..+|+++.+++
T Consensus 24 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 103 (148)
T 2dba_A 24 GASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALY 103 (148)
T ss_dssp TCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHH
T ss_pred chHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHH
Confidence 34555566666666666666666666666666666655 555666666666666666666666666666666666666
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 045024 165 ALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIF 204 (1173)
Q Consensus 165 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~ 204 (1173)
.+|.++...|++++|+..|+++++.+|++..++..++.+.
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 143 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNIS 143 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 6666666666666666666666666666655555555443
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.16 E-value=2.1e-10 Score=115.77 Aligned_cols=128 Identities=13% Similarity=0.040 Sum_probs=94.1
Q ss_pred HHHHHHHHHHHHHccCCHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHH
Q 045024 57 AVAFRYLGHYYTRFSIDTQRAIKCYQRAVSL--------SPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWA 128 (1173)
Q Consensus 57 ~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~--------~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a 128 (1173)
+..+..+|..++. .|++++|+..|.+++.. +|.++.. ...+|.+..+
T Consensus 11 a~~~~~~G~~~~~-~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~ 65 (162)
T 3rkv_A 11 VEALRQKGNELFV-QKDYKEAIDAYRDALTRLDTLILREKPGEPEW------------------------VELDRKNIPL 65 (162)
T ss_dssp HHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHH------------------------HHHHHTHHHH
T ss_pred HHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHHhcccCCCCHHHH------------------------HHHHHHHHHH
Confidence 5566777777777 77777777777777766 3333211 1225666778
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh-HHHHHHHHHHHHc
Q 045024 129 FRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSI-FPLLESGNIFLML 207 (1173)
Q Consensus 129 ~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-~a~~~la~~~~~~ 207 (1173)
+..+|.++...|++++|+..+++++.++|+++.+++.+|.+|...|++++|+..|+++++++|++. .+...++.+....
T Consensus 66 ~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~ 145 (162)
T 3rkv_A 66 YANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERR 145 (162)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence 888888888888888888888888888888888888888888888888888888888888888877 5566666665544
Q ss_pred CC
Q 045024 208 GN 209 (1173)
Q Consensus 208 g~ 209 (1173)
++
T Consensus 146 ~~ 147 (162)
T 3rkv_A 146 AE 147 (162)
T ss_dssp HH
T ss_pred HH
Confidence 33
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=99.16 E-value=4.4e-10 Score=117.32 Aligned_cols=166 Identities=14% Similarity=0.109 Sum_probs=134.7
Q ss_pred HHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCCH
Q 045024 103 EHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRG------YPTSPHLWEALGLAYHRLGMF 176 (1173)
Q Consensus 103 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~------~p~~~~~~~~la~~~~~~g~~ 176 (1173)
...|++++|...++.+....+....++..+|.++...|++++|+..+++++.. .|....++..+|.++...|++
T Consensus 3 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred cccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 56799999999666655544467899999999999999999999999999983 345577899999999999999
Q ss_pred HHHHHHHHHHHHh---CCCC----hHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhh
Q 045024 177 SAAIKSYGRAIEL---DDTS----IFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLASGLLGLAKQCINLG 249 (1173)
Q Consensus 177 ~~A~~~~~~al~~---~p~~----~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~l~~~~~a~g 249 (1173)
++|+..++++++. .+++ ..++..+|.++...|++++|+..+++++...+.... ....+.++..+|..+...|
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~la~~~~~~g 161 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADD-QVAIACAFRGLGDLAQQEK 161 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccc-hHHHHHHHHHHHHHHHHCc
Confidence 9999999999988 4432 467889999999999999999999999986543222 2245666777888888889
Q ss_pred cHHHHHHHHHHHHHHHHHHh
Q 045024 250 AFRWGASLLEDACKVAEANT 269 (1173)
Q Consensus 250 ~~~~A~~~l~~Al~~~~~~~ 269 (1173)
++++|...++++++......
T Consensus 162 ~~~~A~~~~~~al~~~~~~~ 181 (203)
T 3gw4_A 162 NLLEAQQHWLRARDIFAELE 181 (203)
T ss_dssp CHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHHcC
Confidence 99999999999999877643
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.15 E-value=2.4e-09 Score=126.44 Aligned_cols=175 Identities=9% Similarity=-0.068 Sum_probs=129.9
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------CCHHH
Q 045024 95 GEALCELLEHGGKESLEVVVCREASDKSPRA------FWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYP------TSPHL 162 (1173)
Q Consensus 95 ~~~La~~~~~~g~~~~A~~~~~~al~~~p~~------~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p------~~~~~ 162 (1173)
+..+|.+|...|++++|++.+.+++...+.. ..+...+|.++...|++++|+..+++++...+ ....+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 4555666666666666666666555443321 12345566677777888888888887776432 23567
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC------CCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCHHHHHHHHH
Q 045024 163 WEALGLAYHRLGMFSAAIKSYGRAIELD------DTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLAS 236 (1173)
Q Consensus 163 ~~~la~~~~~~g~~~~A~~~~~~al~~~------p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~ 236 (1173)
+..+|.+|...|++++|...+++++... +....++..+|.+|...|++++|...+++++...+.........+.
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 217 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAE 217 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence 8888999999999999999998887652 2236788899999999999999999999999876655444556778
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHh
Q 045024 237 GLLGLAKQCINLGAFRWGASLLEDACKVAEANT 269 (1173)
Q Consensus 237 ~~~~l~~~~~a~g~~~~A~~~l~~Al~~~~~~~ 269 (1173)
++...|..+...+++.+|...+.++++.+....
T Consensus 218 ~~~~~g~~~~~~~~y~~A~~~~~~a~~~~~~~~ 250 (434)
T 4b4t_Q 218 LDLMSGILHCEDKDYKTAFSYFFESFESYHNLT 250 (434)
T ss_dssp HHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhh
Confidence 888899999999999999999999998876654
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=99.14 E-value=2.4e-10 Score=112.85 Aligned_cols=116 Identities=18% Similarity=0.137 Sum_probs=75.6
Q ss_pred HHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q 045024 57 AVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQ 136 (1173)
Q Consensus 57 ~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~ 136 (1173)
+..+..+|..++. .|++++|+..|+++++++|+++.. .++...|.+..+|.++|.++
T Consensus 11 a~~~~~~G~~l~~-~g~~eeAi~~Y~kAL~l~p~~~~~----------------------~a~~~~~~~a~a~~n~g~al 67 (159)
T 2hr2_A 11 AYLALSDAQRQLV-AGEYDEAAANCRRAMEISHTMPPE----------------------EAFDHAGFDAFCHAGLAEAL 67 (159)
T ss_dssp HHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHHTTSCTT----------------------SCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-CCCHHHHHHHHHHHHhhCCCCcch----------------------hhhhhccchHHHHHHHHHHH
Confidence 4566777888888 888888888888888888874332 01111122334566666666
Q ss_pred HHcCCHHHHHHHHHHHHHh-------CCCCHHHH----HHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH
Q 045024 137 LHHKKWSEAVQSLQHAIRG-------YPTSPHLW----EALGLAYHRLGMFSAAIKSYGRAIELDDTSIF 195 (1173)
Q Consensus 137 ~~~g~~~~A~~~l~~al~~-------~p~~~~~~----~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 195 (1173)
..+|++++|+..+++++++ +|++..+| +++|.++..+|++++|+..|+++++++|++..
T Consensus 68 ~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~ 137 (159)
T 2hr2_A 68 AGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKG 137 (159)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCS
T ss_pred HHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHH
Confidence 6666666666666666666 77777777 77777777777777777777777777666543
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=99.14 E-value=7.1e-10 Score=106.53 Aligned_cols=99 Identities=20% Similarity=0.134 Sum_probs=40.3
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc---HHHHHHHHH
Q 045024 61 RYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDS---VSGEALCELLEHGGKESLEVVVCREASDKSPRA---FWAFRRLGY 134 (1173)
Q Consensus 61 ~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~---~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~la~ 134 (1173)
+.+|..+.. .|++++|+..|+++++.+|+++ .+++.+|.++...|++++|+..|++++...|++ +.+++.+|.
T Consensus 6 ~~~a~~~~~-~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~ 84 (129)
T 2xev_A 6 YNVAFDALK-NGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHHH-TTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHH
T ss_pred HHHHHHHHH-hCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHH
Confidence 334444444 4444444444444444444333 333344444444444444444444444433333 333444444
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCH
Q 045024 135 LQLHHKKWSEAVQSLQHAIRGYPTSP 160 (1173)
Q Consensus 135 ~~~~~g~~~~A~~~l~~al~~~p~~~ 160 (1173)
++...|++++|+..|++++...|+++
T Consensus 85 ~~~~~g~~~~A~~~~~~~~~~~p~~~ 110 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQVATQYPGSD 110 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTSH
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCCCh
Confidence 44444444444444444444444333
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.13 E-value=1.9e-10 Score=106.96 Aligned_cols=106 Identities=15% Similarity=0.158 Sum_probs=70.6
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--ChHHHHH
Q 045024 122 SPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDT--SIFPLLE 199 (1173)
Q Consensus 122 ~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~a~~~ 199 (1173)
+|+++.++..+|.++...|++++|+..++++++.+|.+..++..+|.++...|++++|+..|+++++.+|. +..++..
T Consensus 2 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 81 (112)
T 2kck_A 2 VDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAA 81 (112)
T ss_dssp CCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHH
Confidence 45555566666666666666666666666666666666666666666666666666666666666666666 6666666
Q ss_pred HHHHHHHc-CChHHHHHHHHHHHhhcCCC
Q 045024 200 SGNIFLML-GNFRKGVEQFQLALKISSEN 227 (1173)
Q Consensus 200 la~~~~~~-g~~~~A~~~~~~al~~~p~~ 227 (1173)
+|.++... |++++|++.+++++...|.+
T Consensus 82 l~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 110 (112)
T 2kck_A 82 KADALRYIEGKEVEAEIAEARAKLEHHHH 110 (112)
T ss_dssp HHHHHTTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred HHHHHHHHhCCHHHHHHHHHHHhhcccCC
Confidence 66666666 66666666666666666654
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=99.12 E-value=8.5e-10 Score=105.99 Aligned_cols=116 Identities=18% Similarity=0.125 Sum_probs=105.3
Q ss_pred HHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCC---HHHHH
Q 045024 23 SLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNA---VAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDD---SVSGE 96 (1173)
Q Consensus 23 ~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~---~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~---~~a~~ 96 (1173)
..++.+|..++..|+ +++|+..|+++++.+|+++ .+++.+|.++.. .|++++|+..|+++++.+|++ +.+++
T Consensus 3 ~~~~~~a~~~~~~~~-~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~-~~~~~~A~~~~~~~~~~~p~~~~~~~~~~ 80 (129)
T 2xev_A 3 RTAYNVAFDALKNGK-YDDASQLFLSFLELYPNGVYTPNALYWLGESYYA-TRNFQLAEAQFRDLVSRYPTHDKAAGGLL 80 (129)
T ss_dssp CCHHHHHHHHHHTTC-HHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTSTTHHHHHH
T ss_pred HHHHHHHHHHHHhCC-HHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHCCCCcccHHHHH
Confidence 357889999999998 9999999999999999988 899999999999 999999999999999999999 88899
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcC
Q 045024 97 ALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHK 140 (1173)
Q Consensus 97 ~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g 140 (1173)
.+|.++...|++++|+..|+++++..|+++.+......+....+
T Consensus 81 ~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~l~~ 124 (129)
T 2xev_A 81 KLGLSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERLQSIRL 124 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999887766665544433
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=99.12 E-value=7.9e-10 Score=105.81 Aligned_cols=116 Identities=14% Similarity=0.140 Sum_probs=87.6
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------hHHH
Q 045024 125 AFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTS-------IFPL 197 (1173)
Q Consensus 125 ~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-------~~a~ 197 (1173)
.+..+..+|..+...|++++|+..|++++..+|.++.++..+|.++...|++++|+..++++++..|.+ ..++
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 355677777777788888888888888887777777778888888888888888888888887777665 7777
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHH
Q 045024 198 LESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLASGLLGL 241 (1173)
Q Consensus 198 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~l 241 (1173)
+.+|.++...|++++|+..|+++++..| ++.....++.+...+
T Consensus 83 ~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~ 125 (131)
T 1elr_A 83 ARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKIL 125 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHH
Confidence 7888888888888888888888888777 466665555555443
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=99.12 E-value=2e-11 Score=146.43 Aligned_cols=124 Identities=10% Similarity=0.067 Sum_probs=75.8
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 045024 95 GEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLG 174 (1173)
Q Consensus 95 ~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g 174 (1173)
+..+|..+...|++++|+..|+++++.+|+++.++..+|.++..+|++++|+..++++++++|+++.++..+|.+|..+|
T Consensus 9 ~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g 88 (477)
T 1wao_1 9 LKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALG 88 (477)
T ss_dssp SSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 33445555556666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred CHHHHHHHHHHHHHhCCCChHHHHHHHHH--HHHcCChHHHHHHHH
Q 045024 175 MFSAAIKSYGRAIELDDTSIFPLLESGNI--FLMLGNFRKGVEQFQ 218 (1173)
Q Consensus 175 ~~~~A~~~~~~al~~~p~~~~a~~~la~~--~~~~g~~~~A~~~~~ 218 (1173)
++++|++.|+++++.+|++..++..++.+ +...|++++|++.++
T Consensus 89 ~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 89 KFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp CHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 66666666666666666666666666655 566666666666666
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.11 E-value=3.9e-10 Score=104.77 Aligned_cols=105 Identities=16% Similarity=0.192 Sum_probs=67.4
Q ss_pred CCCCHHHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCC--CHHHH
Q 045024 18 NPDDPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPD--DSVSG 95 (1173)
Q Consensus 18 ~P~~~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~--~~~a~ 95 (1173)
+|+++.+++.+|.++...++ +++|+..|+++++.+|.++.++..+|.++.. .|++++|+..|+++++.+|+ +..++
T Consensus 2 ~p~~~~~~~~~~~~~~~~~~-~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~-~~~~~~A~~~~~~a~~~~~~~~~~~~~ 79 (112)
T 2kck_A 2 VDQNPEEYYLEGVLQYDAGN-YTESIDLFEKAIQLDPEESKYWLMKGKALYN-LERYEEAVDCYNYVINVIEDEYNKDVW 79 (112)
T ss_dssp CCSSTTGGGGHHHHHHSSCC-HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHTSCCTTCHHHH
T ss_pred CCCcHHHHHHHHHHHHHhhh-HHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhCcccchHHHH
Confidence 45556666666666666655 6666666666666666666666666666666 66666666666666666666 66666
Q ss_pred HHHHHHHHHC-CCHHHHHHHHHHHHhhCCC
Q 045024 96 EALCELLEHG-GKESLEVVVCREASDKSPR 124 (1173)
Q Consensus 96 ~~La~~~~~~-g~~~~A~~~~~~al~~~p~ 124 (1173)
..+|.++... |++++|+..+++++...|.
T Consensus 80 ~~l~~~~~~~~~~~~~A~~~~~~~~~~~p~ 109 (112)
T 2kck_A 80 AAKADALRYIEGKEVEAEIAEARAKLEHHH 109 (112)
T ss_dssp HHHHHHHTTCSSCSHHHHHHHHHHGGGCCC
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHhhcccC
Confidence 6666666666 6666666666666666554
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=99.09 E-value=7.1e-10 Score=106.12 Aligned_cols=110 Identities=17% Similarity=0.241 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc-------HHHH
Q 045024 57 AVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRA-------FWAF 129 (1173)
Q Consensus 57 ~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~-------~~a~ 129 (1173)
+..++.+|.++.. .|++++|+..|+++++.+|.++.++..+|.++...|++++|+..+++++...|++ +.++
T Consensus 4 ~~~~~~l~~~~~~-~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 4 ALKEKELGNDAYK-KKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHH-hcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 3444555555555 5555555555555555555555555555555555555555555555554444433 4444
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 045024 130 RRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGL 168 (1173)
Q Consensus 130 ~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~ 168 (1173)
..+|.++...|++++|+..|+++++..| ++.....++.
T Consensus 83 ~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~ 120 (131)
T 1elr_A 83 ARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQ 120 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHH
Confidence 4444444444444444444444444444 2333333333
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=99.08 E-value=2.9e-11 Score=145.00 Aligned_cols=127 Identities=14% Similarity=0.132 Sum_probs=111.1
Q ss_pred HHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q 045024 57 AVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQ 136 (1173)
Q Consensus 57 ~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~ 136 (1173)
+.++..+|..+.. .|++++|+..|+++++.+|++..++..+|.++..+|++++|+..++++++.+|+++.+++.+|.++
T Consensus 6 a~~~~~lg~~~~~-~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~ 84 (477)
T 1wao_1 6 AEELKTQANDYFK-AKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASN 84 (477)
T ss_dssp HTTSSSSSSSTTT-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-hCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 3456667788888 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH--HHHcCCHHHHHHHHH
Q 045024 137 LHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLA--YHRLGMFSAAIKSYG 184 (1173)
Q Consensus 137 ~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~--~~~~g~~~~A~~~~~ 184 (1173)
..+|++++|+..|+++++.+|++..++..++.+ +...|++++|++.++
T Consensus 85 ~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 85 MALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 999999999999999999999999899888888 888899999999998
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.06 E-value=1.1e-10 Score=133.50 Aligned_cols=159 Identities=15% Similarity=0.102 Sum_probs=93.1
Q ss_pred CCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHH
Q 045024 53 NPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRL 132 (1173)
Q Consensus 53 ~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l 132 (1173)
.+..+..+..+|..++. .|++++|+..|++++...|++.. +...|++.++...+. ..+++.+
T Consensus 175 ~~~~a~~~~~~g~~~~~-~g~~~~A~~~y~~Al~~~p~~~~--------~~~~~~~~~~~~~l~---------~~~~~nl 236 (338)
T 2if4_A 175 RIGAADRRKMDGNSLFK-EEKLEEAMQQYEMAIAYMGDDFM--------FQLYGKYQDMALAVK---------NPCHLNI 236 (338)
T ss_dssp HHHHHHHHHHHHHHTCS-SSCCHHHHHHHHHHHHHSCHHHH--------HTCCHHHHHHHHHHH---------THHHHHH
T ss_pred HHHHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHhccchh--------hhhcccHHHHHHHHH---------HHHHHHH
Confidence 34456677888888888 88888888888888888776541 223334444443321 1478899
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHH-HHHcCChH
Q 045024 133 GYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNI-FLMLGNFR 211 (1173)
Q Consensus 133 a~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~-~~~~g~~~ 211 (1173)
|.++..+|++++|+..++++++.+|++..+++.+|.+|...|++++|+..|+++++++|++..++..++.+ ....+..+
T Consensus 237 a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~ 316 (338)
T 2if4_A 237 AACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQ 316 (338)
T ss_dssp HHHHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999988888 44567778
Q ss_pred HHHHHHHHHHhhcCCCHH
Q 045024 212 KGVEQFQLALKISSENVS 229 (1173)
Q Consensus 212 ~A~~~~~~al~~~p~~~~ 229 (1173)
++...|.+++...|+++.
T Consensus 317 ~a~~~~~~~l~~~p~~~~ 334 (338)
T 2if4_A 317 KQKEMYKGIFKGKDEGGA 334 (338)
T ss_dssp ------------------
T ss_pred HHHHHHHHhhCCCCCCCC
Confidence 888999999998887653
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.05 E-value=1.2e-10 Score=133.27 Aligned_cols=159 Identities=11% Similarity=0.055 Sum_probs=89.4
Q ss_pred hCCCCHHHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHH
Q 045024 17 ANPDDPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGE 96 (1173)
Q Consensus 17 ~~P~~~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~ 96 (1173)
..|+.+..+..+|..++..++ |++|+..|++++...|++.. +.. .|+++++...+. ..+++
T Consensus 174 ~~~~~a~~~~~~g~~~~~~g~-~~~A~~~y~~Al~~~p~~~~--------~~~-~~~~~~~~~~l~---------~~~~~ 234 (338)
T 2if4_A 174 ERIGAADRRKMDGNSLFKEEK-LEEAMQQYEMAIAYMGDDFM--------FQL-YGKYQDMALAVK---------NPCHL 234 (338)
T ss_dssp HHHHHHHHHHHHHHHTCSSSC-CHHHHHHHHHHHHHSCHHHH--------HTC-CHHHHHHHHHHH---------THHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHHhccchh--------hhh-cccHHHHHHHHH---------HHHHH
Confidence 345567789999999999987 99999999999999998652 223 455555544332 13667
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH-HHHcCC
Q 045024 97 ALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLA-YHRLGM 175 (1173)
Q Consensus 97 ~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~-~~~~g~ 175 (1173)
.+|.++...|++++|+..|+++++.+|+++.+++.+|.++..+|++++|+..|+++++++|++..++..++.+ ....+.
T Consensus 235 nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~ 314 (338)
T 2if4_A 235 NIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKAL 314 (338)
T ss_dssp HHHHHHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----------------------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
Confidence 7777777777777777777777777777777777777777777777777777777777777777777777777 334566
Q ss_pred HHHHHHHHHHHHHhCCCCh
Q 045024 176 FSAAIKSYGRAIELDDTSI 194 (1173)
Q Consensus 176 ~~~A~~~~~~al~~~p~~~ 194 (1173)
.+++...|.+++...|++.
T Consensus 315 ~~~a~~~~~~~l~~~p~~~ 333 (338)
T 2if4_A 315 YQKQKEMYKGIFKGKDEGG 333 (338)
T ss_dssp -------------------
T ss_pred HHHHHHHHHHhhCCCCCCC
Confidence 6777777777777777654
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.05 E-value=2.4e-09 Score=126.45 Aligned_cols=201 Identities=11% Similarity=0.128 Sum_probs=168.0
Q ss_pred HHHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCCCH-----------------HHHHHHHHHHHHccCCHHHHHHHHHHH
Q 045024 22 PSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNA-----------------VAFRYLGHYYTRFSIDTQRAIKCYQRA 84 (1173)
Q Consensus 22 ~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~-----------------~a~~~lg~~~~~~~g~~~eA~~~~~~a 84 (1173)
|...+..|..+...|+ |++|++.|.++++..|... .++..+|.+|.. .|++++|.+.+.++
T Consensus 4 p~~~l~~a~~l~~~~~-y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~-~~~~~~a~~~~~~~ 81 (434)
T 4b4t_Q 4 PGSKLEEARRLVNEKQ-YNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVT-MGAKDKLREFIPHS 81 (434)
T ss_dssp TTHHHHHHHHHHHHTC-HHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHH-HTCHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHCCC-HHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHH-CCCHHHHHHHHHHH
Confidence 4456778888888887 9999999999999888652 468899999999 99999999999999
Q ss_pred HhhCCCCHH------HHHHHHHHHHHCCCHHHHHHHHHHHHhhCC------CcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 045024 85 VSLSPDDSV------SGEALCELLEHGGKESLEVVVCREASDKSP------RAFWAFRRLGYLQLHHKKWSEAVQSLQHA 152 (1173)
Q Consensus 85 l~~~p~~~~------a~~~La~~~~~~g~~~~A~~~~~~al~~~p------~~~~a~~~la~~~~~~g~~~~A~~~l~~a 152 (1173)
++..+.... +...++.++...|++++|+..+++++...+ ....++..+|.++...|+|++|+..++++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~ 161 (434)
T 4b4t_Q 82 TEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDL 161 (434)
T ss_dssp HHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHH
Confidence 987655433 356678888889999999999999876532 34678899999999999999999999998
Q ss_pred HHh------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---C----hHHHHHHHHHHHHcCChHHHHHHHHH
Q 045024 153 IRG------YPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDT---S----IFPLLESGNIFLMLGNFRKGVEQFQL 219 (1173)
Q Consensus 153 l~~------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~----~~a~~~la~~~~~~g~~~~A~~~~~~ 219 (1173)
+.. .+....++..+|.+|...|++++|...+++++...+. . ...+..+|.++...|++++|..+|.+
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~ 241 (434)
T 4b4t_Q 162 LREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFE 241 (434)
T ss_dssp HHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHH
T ss_pred HHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 875 2334678999999999999999999999999876432 2 34567788999999999999999999
Q ss_pred HHhhc
Q 045024 220 ALKIS 224 (1173)
Q Consensus 220 al~~~ 224 (1173)
+++..
T Consensus 242 a~~~~ 246 (434)
T 4b4t_Q 242 SFESY 246 (434)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 98753
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.02 E-value=6.1e-10 Score=109.69 Aligned_cols=32 Identities=22% Similarity=0.266 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 045024 142 WSEAVQSLQHAIRGYPTSPHLWEALGLAYHRL 173 (1173)
Q Consensus 142 ~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~ 173 (1173)
+++|+..|+++++++|++..+++.+|.+|..+
T Consensus 62 ~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~l 93 (158)
T 1zu2_A 62 IQEAITKFEEALLIDPKKDEAVWCIGNAYTSF 93 (158)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh
Confidence 34555555555555555555555555555544
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.02 E-value=5.2e-10 Score=106.10 Aligned_cols=91 Identities=14% Similarity=0.147 Sum_probs=46.7
Q ss_pred CCHHHHHHHHHHHHhh---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 045024 106 GKESLEVVVCREASDK---SPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKS 182 (1173)
Q Consensus 106 g~~~~A~~~~~~al~~---~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 182 (1173)
|++++|+..|+++++. +|+++.++..+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..
T Consensus 4 g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 83 (117)
T 3k9i_A 4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVEL 83 (117)
T ss_dssp ---CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHHH
Confidence 4445555555555554 3444455555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHhCCCChHH
Q 045024 183 YGRAIELDDTSIFP 196 (1173)
Q Consensus 183 ~~~al~~~p~~~~a 196 (1173)
++++++..|+++..
T Consensus 84 ~~~al~~~p~~~~~ 97 (117)
T 3k9i_A 84 LLKIIAETSDDETI 97 (117)
T ss_dssp HHHHHHHHCCCHHH
T ss_pred HHHHHHhCCCcHHH
Confidence 55555555554443
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.00 E-value=9.5e-10 Score=108.34 Aligned_cols=92 Identities=17% Similarity=0.220 Sum_probs=78.0
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc
Q 045024 138 HHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGM----------FSAAIKSYGRAIELDDTSIFPLLESGNIFLML 207 (1173)
Q Consensus 138 ~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~----------~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~ 207 (1173)
+.+.+++|+..++++++++|++++++.++|.++...|+ +++|+..|+++++++|++..+++.+|.+|..+
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~l 93 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF 93 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh
Confidence 44566777777777777777777777777777777665 56999999999999999999999999999988
Q ss_pred C-----------ChHHHHHHHHHHHhhcCCCHH
Q 045024 208 G-----------NFRKGVEQFQLALKISSENVS 229 (1173)
Q Consensus 208 g-----------~~~~A~~~~~~al~~~p~~~~ 229 (1173)
| ++++|+.+|+++++++|++..
T Consensus 94 g~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~ 126 (158)
T 1zu2_A 94 AFLTPDETEAKHNFDLATQFFQQAVDEQPDNTH 126 (158)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred cccCcchhhhhccHHHHHHHHHHHHHhCCCCHH
Confidence 5 899999999999999999864
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.99 E-value=2.3e-09 Score=123.85 Aligned_cols=140 Identities=15% Similarity=0.185 Sum_probs=104.6
Q ss_pred HHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q 045024 57 AVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQ 136 (1173)
Q Consensus 57 ~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~ 136 (1173)
+..+..+|..+.. .|++++|+..|+++++..|..+ +....+.....+|.+..++..+|.++
T Consensus 223 a~~~~~~g~~~~~-~g~~~~Ai~~y~kAl~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~nla~~~ 283 (370)
T 1ihg_A 223 SEDLKNIGNTFFK-SQNWEMAIKKYTKVLRYVEGSR------------------AAAEDADGAKLQPVALSCVLNIGACK 283 (370)
T ss_dssp HHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHH------------------HHSCHHHHGGGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-hcCHHHHHHHHHHHHHHhhcCc------------------cccChHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888999999 9999999999999887543321 01113334445666677777788888
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHH
Q 045024 137 LHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVE 215 (1173)
Q Consensus 137 ~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~ 215 (1173)
..+|++++|+..++++++.+|+++.+++.+|.+|...|++++|+..|+++++++|++..++..++.++...++++++..
T Consensus 284 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 284 LKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888888888888888888888888888888888888888888888877777778888777777776654
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.99 E-value=2.8e-09 Score=123.22 Aligned_cols=140 Identities=11% Similarity=0.061 Sum_probs=113.8
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 045024 93 VSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHR 172 (1173)
Q Consensus 93 ~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~ 172 (1173)
..+..+|..+...|++++|+..|+++++..|..+ .....++....+|.+..++.++|.+|..
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~nla~~~~~ 285 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSR------------------AAAEDADGAKLQPVALSCVLNIGACKLK 285 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH------------------HHSCHHHHGGGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCc------------------cccChHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3466667777777777777777777765433221 1111233344778888999999999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhhc
Q 045024 173 LGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLASGLLGLAKQCINLGA 250 (1173)
Q Consensus 173 ~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~l~~~~~a~g~ 250 (1173)
.|++++|+..++++++++|++..+++.+|.+|..+|++++|+..|+++++++|++..++..++.++..+++...+...
T Consensus 286 ~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k~ 363 (370)
T 1ihg_A 286 MSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEKA 363 (370)
T ss_dssp TTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred ccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999998886655443
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.99 E-value=5e-10 Score=106.19 Aligned_cols=93 Identities=12% Similarity=0.042 Sum_probs=53.7
Q ss_pred cCCHHHHHHHHHHHHhh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 045024 71 SIDTQRAIKCYQRAVSL---SPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQ 147 (1173)
Q Consensus 71 ~g~~~eA~~~~~~al~~---~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~ 147 (1173)
.|++++|+..|+++++. +|++..++..+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 45555666666666665 355555566666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHhCCCCHHHH
Q 045024 148 SLQHAIRGYPTSPHLW 163 (1173)
Q Consensus 148 ~l~~al~~~p~~~~~~ 163 (1173)
.+++++...|+++...
T Consensus 83 ~~~~al~~~p~~~~~~ 98 (117)
T 3k9i_A 83 LLLKIIAETSDDETIQ 98 (117)
T ss_dssp HHHHHHHHHCCCHHHH
T ss_pred HHHHHHHhCCCcHHHH
Confidence 6666666666555443
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.96 E-value=4.2e-09 Score=104.63 Aligned_cols=140 Identities=16% Similarity=0.147 Sum_probs=75.1
Q ss_pred HHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q 045024 57 AVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQ 136 (1173)
Q Consensus 57 ~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~ 136 (1173)
..++..+|.++.. .|++++|+..++++++..+..... +....++..+|.++
T Consensus 9 ~~~~~~l~~~~~~-~~~~~~A~~~~~~al~~~~~~~~~----------------------------~~~~~~~~~l~~~~ 59 (164)
T 3ro3_A 9 GRAFGNLGNTHYL-LGNFRDAVIAHEQRLLIAKEFGDK----------------------------AAERIAYSNLGNAY 59 (164)
T ss_dssp HHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHTCH----------------------------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-hcCHHHHHHHHHHHHHHHHHhCCc----------------------------hHHHHHHHHHHHHH
Confidence 3455666666666 666666666666666554321100 00012344455555
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------ChHHHHHHHHHH
Q 045024 137 LHHKKWSEAVQSLQHAIRGYPTS------PHLWEALGLAYHRLGMFSAAIKSYGRAIELDDT------SIFPLLESGNIF 204 (1173)
Q Consensus 137 ~~~g~~~~A~~~l~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~~a~~~la~~~ 204 (1173)
...|++++|+..+++++...+.. ..++..+|.++...|++++|+..++++++..+. ...++..+|.++
T Consensus 60 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~ 139 (164)
T 3ro3_A 60 IFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAY 139 (164)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHH
Confidence 55555555555555554433211 334555666666666666666666666554221 134556667777
Q ss_pred HHcCChHHHHHHHHHHHhhcC
Q 045024 205 LMLGNFRKGVEQFQLALKISS 225 (1173)
Q Consensus 205 ~~~g~~~~A~~~~~~al~~~p 225 (1173)
...|++++|+..++++++...
T Consensus 140 ~~~g~~~~A~~~~~~a~~~~~ 160 (164)
T 3ro3_A 140 TALGNHDQAMHFAEKHLEISR 160 (164)
T ss_dssp HHHTCHHHHHHHHHHHHHHHT
T ss_pred HHccCHHHHHHHHHHHHHHHH
Confidence 777777777777777666543
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.96 E-value=3.5e-09 Score=105.20 Aligned_cols=131 Identities=12% Similarity=0.014 Sum_probs=88.3
Q ss_pred HHHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCC----
Q 045024 22 PSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQN------AVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDD---- 91 (1173)
Q Consensus 22 ~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~------~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~---- 91 (1173)
..++..+|.++...++ +++|+..++++++..+.. ..++..+|.++.. .|++++|+..++++++..+..
T Consensus 9 ~~~~~~l~~~~~~~~~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~a~~~~~~~~~~~ 86 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGN-FRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIF-LGEFETASEYYKKTLLLARQLKDRA 86 (164)
T ss_dssp HHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHHhCCcH
Confidence 5678999999999987 999999999999875532 2478889999999 999999999999998765432
Q ss_pred --HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCC------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 045024 92 --SVSGEALCELLEHGGKESLEVVVCREASDKSPR------AFWAFRRLGYLQLHHKKWSEAVQSLQHAIR 154 (1173)
Q Consensus 92 --~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~------~~~a~~~la~~~~~~g~~~~A~~~l~~al~ 154 (1173)
..++..+|.++...|++++|+..++++++..+. ...++..+|.++...|++++|+..++++++
T Consensus 87 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 87 VEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 234556666666666666666666665544211 123344444444444444444444444443
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.77 E-value=5.3e-09 Score=97.28 Aligned_cols=95 Identities=17% Similarity=0.191 Sum_probs=73.7
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------hHHHH
Q 045024 125 AFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTS------IFPLL 198 (1173)
Q Consensus 125 ~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~a~~ 198 (1173)
++.++..+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++++|++ ..+++
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 356677778888888888888888888888888888888888888888888888888888888888877 77777
Q ss_pred HHHHHHHHcCChHHHHHHHHH
Q 045024 199 ESGNIFLMLGNFRKGVEQFQL 219 (1173)
Q Consensus 199 ~la~~~~~~g~~~~A~~~~~~ 219 (1173)
.+|.++...|++++|+..+++
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHHHHhHhhhHhHHHH
Confidence 788888777777776665544
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=98.77 E-value=8.2e-08 Score=90.24 Aligned_cols=83 Identities=17% Similarity=0.168 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhh
Q 045024 144 EAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKI 223 (1173)
Q Consensus 144 ~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~ 223 (1173)
+|+..|+++++.+|+++.+++.+|.++...|++++|+..|+++++.+|++..+++.+|.++...|++++|+..|+++++.
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 82 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAA 82 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 46677777777788778888888888888888888888888888888887778888888888888888888888888777
Q ss_pred cCC
Q 045024 224 SSE 226 (1173)
Q Consensus 224 ~p~ 226 (1173)
.|.
T Consensus 83 ~~~ 85 (115)
T 2kat_A 83 AQS 85 (115)
T ss_dssp HHH
T ss_pred ccc
Confidence 664
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=98.75 E-value=3.7e-08 Score=92.62 Aligned_cols=82 Identities=16% Similarity=0.167 Sum_probs=53.7
Q ss_pred HHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 045024 110 LEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIEL 189 (1173)
Q Consensus 110 ~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 189 (1173)
+|+..|+++++.+|+++.+++.+|.++...|++++|+..|++++..+|+++.++..+|.++...|++++|+..|+++++.
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 82 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAA 82 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 45566666666666666666666666666666666666666666666666666666666666666666666666666665
Q ss_pred CC
Q 045024 190 DD 191 (1173)
Q Consensus 190 ~p 191 (1173)
.|
T Consensus 83 ~~ 84 (115)
T 2kat_A 83 AQ 84 (115)
T ss_dssp HH
T ss_pred cc
Confidence 55
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=98.72 E-value=9.4e-08 Score=85.07 Aligned_cols=83 Identities=28% Similarity=0.375 Sum_probs=49.6
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 045024 125 AFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIF 204 (1173)
Q Consensus 125 ~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~ 204 (1173)
++.++..+|.++...|++++|+..|++++..+|+++.++..+|.++...|++++|+..|+++++.+|++..++..+|.++
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~ 87 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAK 87 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 34555556666666666666666666666666666666666666666666666666666666666666666666665555
Q ss_pred HHc
Q 045024 205 LML 207 (1173)
Q Consensus 205 ~~~ 207 (1173)
...
T Consensus 88 ~~~ 90 (91)
T 1na3_A 88 QKQ 90 (91)
T ss_dssp HHH
T ss_pred Hhc
Confidence 543
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.71 E-value=8.8e-09 Score=95.73 Aligned_cols=92 Identities=16% Similarity=0.110 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCC------HHHH
Q 045024 22 PSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDD------SVSG 95 (1173)
Q Consensus 22 ~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~------~~a~ 95 (1173)
+..++.+|.+++..|+ +++|+..|+++++.+|+++.+++.+|.++.. .|++++|+..|+++++++|++ ..++
T Consensus 4 ~~~~~~~g~~~~~~~~-~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 81 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGL-YREAVHCYDQLITAQPQNPVGYSNKAMALIK-LGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQ 81 (111)
T ss_dssp HHHHHHHHHHHHTTTC-HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTSCSSTTSHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCC-HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-hcCHHHHHHHHHHHHHhCCCccHHHHHHHHH
Confidence 4556666666666655 6666666666666666666666666666666 666666666666666666666 5555
Q ss_pred HHHHHHHHHCCCHHHHHHHH
Q 045024 96 EALCELLEHGGKESLEVVVC 115 (1173)
Q Consensus 96 ~~La~~~~~~g~~~~A~~~~ 115 (1173)
..+|.++...|+++.|+..+
T Consensus 82 ~~~~~~~~~~~~~~~a~~~~ 101 (111)
T 2l6j_A 82 YRLELAQGAVGSVQIPVVEV 101 (111)
T ss_dssp HHHHHHHHHHHCCCCCSSSS
T ss_pred HHHHHHHHHHHhHhhhHhHH
Confidence 66666665555555554443
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=98.68 E-value=1.1e-07 Score=84.59 Aligned_cols=82 Identities=27% Similarity=0.445 Sum_probs=47.9
Q ss_pred CHHHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 045024 21 DPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCE 100 (1173)
Q Consensus 21 ~~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~ 100 (1173)
++.+++.+|.++...++ +++|+..|+++++.+|+++.+++.+|.++.. .|++++|+..|+++++.+|++..++..+|.
T Consensus 8 ~~~~~~~la~~~~~~~~-~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~ 85 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGD-YDEAIEYYQKALELDPNNAEAWYNLGNAYYK-QGDYDEAIEYYQKALELDPNNAEAKQNLGN 85 (91)
T ss_dssp HHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccC-HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-HhhHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 34555555655555554 5666666666665566555556666666665 666666666666666655555555555555
Q ss_pred HHHH
Q 045024 101 LLEH 104 (1173)
Q Consensus 101 ~~~~ 104 (1173)
++..
T Consensus 86 ~~~~ 89 (91)
T 1na3_A 86 AKQK 89 (91)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 5544
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=98.65 E-value=2.6e-06 Score=91.47 Aligned_cols=84 Identities=21% Similarity=0.119 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHhcCCC--cHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHhhCCCC-hhHHHHhHHHHHHh-cCCHHH
Q 045024 401 GLKQHALIRGLQLDVS--LADAWAHIGKLYGEV-----GEKKLARQAFDSARSIDPSL-ALPWAGMSADVQAS-ESLVDD 471 (1173)
Q Consensus 401 ~~a~~a~~kal~l~p~--~~~a~~~Lg~~y~~~-----g~~e~A~~~f~~al~~~P~~-~~a~~~l~a~~~~~-~g~~~e 471 (1173)
+.+...++++++++|+ +..+|..+|.+|... |+.++|.+.|+++++++|+. ..+++. .+..+.. .|++++
T Consensus 180 ~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~-YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 180 HAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHIT-YADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHH-HHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHH-HHHHHHHhcCCHHH
Confidence 4566789999999999 677999999999995 99999999999999999975 888888 5656666 599999
Q ss_pred HHHHHHHHHhcCCc
Q 045024 472 AFESCLRAVQILPL 485 (1173)
Q Consensus 472 A~~~~~~al~~~p~ 485 (1173)
|...+++++...|.
T Consensus 259 a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 259 FDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHCCGG
T ss_pred HHHHHHHHHcCCCC
Confidence 99999999999886
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=98.56 E-value=2.1e-07 Score=85.26 Aligned_cols=68 Identities=25% Similarity=0.344 Sum_probs=32.6
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 045024 122 SPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIEL 189 (1173)
Q Consensus 122 ~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 189 (1173)
+|+++.+++.+|.++...|++++|+..|+++++.+|+++.++..+|.+|...|++++|+..|++++++
T Consensus 3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 34444444444444444445555555555444444444444444455554455555555544444444
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.56 E-value=1.2e-07 Score=86.25 Aligned_cols=91 Identities=19% Similarity=0.211 Sum_probs=66.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcC
Q 045024 130 RRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPH-LWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLG 208 (1173)
Q Consensus 130 ~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g 208 (1173)
+..|..+...|++++|+..|+++++.+|+++. ++..+|.++...|++++|+..|+++++.+|++..++.. +
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~ 75 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------K 75 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------H
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------H
Confidence 45677777777788888888887777777777 77777888877888888888888888877777766533 4
Q ss_pred ChHHHHHHHHHHHhhcCCCH
Q 045024 209 NFRKGVEQFQLALKISSENV 228 (1173)
Q Consensus 209 ~~~~A~~~~~~al~~~p~~~ 228 (1173)
.+.+++..|+++...+|+++
T Consensus 76 ~~~~a~~~~~~~~~~~p~~~ 95 (99)
T 2kc7_A 76 MVMDILNFYNKDMYNQLEHH 95 (99)
T ss_dssp HHHHHHHHHCCTTHHHHCCS
T ss_pred HHHHHHHHHHHHhccCcccc
Confidence 56667777777766666543
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=98.54 E-value=5.4e-07 Score=82.44 Aligned_cols=73 Identities=15% Similarity=0.236 Sum_probs=67.6
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCC
Q 045024 155 GYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSEN 227 (1173)
Q Consensus 155 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 227 (1173)
.+|+++.+++.+|.++...|++++|+..|+++++.+|+++.+++.+|.+|...|++++|+..|++++++.|..
T Consensus 2 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~ 74 (100)
T 3ma5_A 2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREE 74 (100)
T ss_dssp ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcC
Confidence 4799999999999999999999999999999999999999999999999999999999999999999987654
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=98.54 E-value=3.5e-06 Score=90.44 Aligned_cols=179 Identities=18% Similarity=0.122 Sum_probs=124.2
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc--------------------CCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 045024 40 EKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFS--------------------IDTQRAIKCYQRAVSLSPDDSVSGEALC 99 (1173)
Q Consensus 40 ~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~--------------------g~~~eA~~~~~~al~~~p~~~~a~~~La 99 (1173)
.-.+..++-.+..+|++.......|..|..+. .++.+|.+.|.++.+. .+-
T Consensus 49 P~~Lk~~e~Ll~~~P~~~~Ll~~~a~ly~~Ya~afV~~~a~~~~~~~~~~~~~~~~RA~~Ly~ra~~y---------~~r 119 (301)
T 3u64_A 49 PLVLKVYEALHLQNPAHRGLSLAVGRLYIMYANAFVQTPAQYLPEDEFEAQNEAYSRARKLYLRGARY---------ALS 119 (301)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHTHHHHHTSCGGGHHHHHHHHHHHHHHHHHHHHH---------HHH
T ss_pred cHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHhcCchhhcchhhHhhhhhhHHHHHHHHHHHHHH---------HHH
Confidence 34455666667778888766655555554421 1233455555554431 111
Q ss_pred HHHHHCCCHHHHHHH-----HHH-HHhhCCCcHHHHHHHHHHHHH-----cC------CHHHHHHHHHHHHHhCCC--CH
Q 045024 100 ELLEHGGKESLEVVV-----CRE-ASDKSPRAFWAFRRLGYLQLH-----HK------KWSEAVQSLQHAIRGYPT--SP 160 (1173)
Q Consensus 100 ~~~~~~g~~~~A~~~-----~~~-al~~~p~~~~a~~~la~~~~~-----~g------~~~~A~~~l~~al~~~p~--~~ 160 (1173)
-+......+.+++.. +.. +.+.+|+++++++..|.+... .| ....|...++++++++|+ +.
T Consensus 120 aL~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~G 199 (301)
T 3u64_A 120 SLETAYPGFTREVFSGDEQRLHKVLSRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEG 199 (301)
T ss_dssp HHHHHSTTHHHHHTSSCHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHH
T ss_pred HHHHhCccHHHHHHhcchhhHHHHHHHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccC
Confidence 111222223222221 222 344567788877777666543 13 357899999999999998 67
Q ss_pred HHHHHHHHHHHHc-----CCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHc-CChHHHHHHHHHHHhhcCCC
Q 045024 161 HLWEALGLAYHRL-----GMFSAAIKSYGRAIELDDTS-IFPLLESGNIFLML-GNFRKGVEQFQLALKISSEN 227 (1173)
Q Consensus 161 ~~~~~la~~~~~~-----g~~~~A~~~~~~al~~~p~~-~~a~~~la~~~~~~-g~~~~A~~~~~~al~~~p~~ 227 (1173)
.+|..+|.+|... |+.++|.++|+++++++|+. ..+++.+|..+... |++++|..++++++..+|..
T Consensus 200 sA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~ 273 (301)
T 3u64_A 200 AVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPES 273 (301)
T ss_dssp HHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGG
T ss_pred HHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCC
Confidence 7999999999995 99999999999999999975 99999999999884 99999999999999987764
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=98.52 E-value=1.3e-06 Score=85.20 Aligned_cols=54 Identities=15% Similarity=0.154 Sum_probs=22.5
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHH
Q 045024 63 LGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEH----GGKESLEVVVCREAS 119 (1173)
Q Consensus 63 lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~----~g~~~~A~~~~~~al 119 (1173)
+|.+|.. .+..++|+.+|+++.+. .++.+.+.+|.+|.. .+++++|+..|+++.
T Consensus 31 lg~~y~~-g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa 88 (138)
T 1klx_A 31 LSLVSNS-QINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKAC 88 (138)
T ss_dssp HHHHTCT-TSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHH
T ss_pred HHHHHHc-CCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHH
Confidence 4444444 44444444444444433 333444444444433 334444444444433
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=98.50 E-value=2e-06 Score=83.90 Aligned_cols=121 Identities=18% Similarity=0.051 Sum_probs=97.8
Q ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH----cCCHHHHH
Q 045024 71 SIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLH----HKKWSEAV 146 (1173)
Q Consensus 71 ~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~----~g~~~~A~ 146 (1173)
.+++++|+.+|+++.+..... +. +|.+|...+..++|+..|+++.+. .++.+.+.+|.+|.. .+++++|+
T Consensus 8 ~~d~~~A~~~~~~aa~~g~~~--a~--lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 8 KKDLKKAIQYYVKACELNEMF--GC--LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHHHTTCTT--HH--HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred ccCHHHHHHHHHHHHcCCCHh--hh--HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 356888999999988876433 33 888888888888899999998876 678888899999988 88999999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCChHHHHHHH
Q 045024 147 QSLQHAIRGYPTSPHLWEALGLAYHR----LGMFSAAIKSYGRAIELDDTSIFPLLESG 201 (1173)
Q Consensus 147 ~~l~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~a~~~la 201 (1173)
..|+++.+. .++.+.+.+|.+|.. .+++++|+..|+++.+. .++.+...++
T Consensus 82 ~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~A~~~l~ 136 (138)
T 1klx_A 82 QYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL--GSEDACGILN 136 (138)
T ss_dssp HHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHC-
T ss_pred HHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHh
Confidence 999998876 678888999999988 88999999999998886 3455555554
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=98.49 E-value=1.7e-06 Score=97.05 Aligned_cols=75 Identities=19% Similarity=0.088 Sum_probs=57.1
Q ss_pred HhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Q 045024 119 SDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSI 194 (1173)
Q Consensus 119 l~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 194 (1173)
+..+|.++.++..++..+...|++++|+..+++++.++|+ ..++..+|.++...|++++|++.|++++.++|...
T Consensus 270 ~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~ 344 (372)
T 3ly7_A 270 LPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGAN 344 (372)
T ss_dssp CGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHH
T ss_pred cccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcC
Confidence 3556777777777777777778888888888888888764 66677778888888888888888888888887654
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.47 E-value=2.6e-07 Score=84.02 Aligned_cols=89 Identities=19% Similarity=0.183 Sum_probs=58.0
Q ss_pred HHHHHHHHHccCcHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 045024 26 LDLGLHLWENSESKEKAAEHFVIAAKLNPQNAV-AFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEH 104 (1173)
Q Consensus 26 ~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~~-a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~ 104 (1173)
+.+|..++..++ +++|+..|+++++.+|+++. +++.+|.++.. .|++++|+..|+++++++|++..++..
T Consensus 4 ~~~a~~~~~~~~-~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~------- 74 (99)
T 2kc7_A 4 LKTIKELINQGD-IENALQALEEFLQTEPVGKDEAYYLMGNAYRK-LGDWQKALNNYQSAIELNPDSPALQAR------- 74 (99)
T ss_dssp HHHHHHHHHHTC-HHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHCTTSTHHHHH-------
T ss_pred HHHHHHHHHcCC-HHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhcCCCcHHHHHH-------
Confidence 456666666665 77777777777777777776 77777777777 777777777777777777776665432
Q ss_pred CCCHHHHHHHHHHHHhhCCC
Q 045024 105 GGKESLEVVVCREASDKSPR 124 (1173)
Q Consensus 105 ~g~~~~A~~~~~~al~~~p~ 124 (1173)
+.+.+++..|+++...+|+
T Consensus 75 -~~~~~a~~~~~~~~~~~p~ 93 (99)
T 2kc7_A 75 -KMVMDILNFYNKDMYNQLE 93 (99)
T ss_dssp -HHHHHHHHHHCCTTHHHHC
T ss_pred -HHHHHHHHHHHHHhccCcc
Confidence 3445555555555555443
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=98.42 E-value=3.7e-06 Score=94.22 Aligned_cols=155 Identities=13% Similarity=0.156 Sum_probs=104.9
Q ss_pred HHHhCCCCHHHH--HHHHHHHHHccCC---HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCC
Q 045024 49 AAKLNPQNAVAF--RYLGHYYTRFSID---TQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSP 123 (1173)
Q Consensus 49 al~~~p~~~~a~--~~lg~~~~~~~g~---~~eA~~~~~~al~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p 123 (1173)
+....|.++.+| +..|..+.. .++ ..+|+.+|+++++++|++..++-.++.+|... ....|
T Consensus 186 ~~~~~p~~~~Aydl~Lra~~~l~-~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~-------------~~~~~ 251 (372)
T 3ly7_A 186 LQKILPHRGALLTNFYQAHDYLL-HGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVR-------------HSQHP 251 (372)
T ss_dssp HHHHSCSSGGGHHHHHHHHHHHH-HCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH-------------HHHSC
T ss_pred HhccCCCCHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH-------------hccCC
Confidence 334455554433 445555554 443 35677777777777777776666666655410 00111
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 045024 124 RAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNI 203 (1173)
Q Consensus 124 ~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~ 203 (1173)
....... ....+... ..++..+|.++.++..++..+...|++++|+..+++++.++|+ ..++..+|.+
T Consensus 252 ~~~~~~~----------~l~~a~~a-~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~ 319 (372)
T 3ly7_A 252 LDEKQLA----------ALNTEIDN-IVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKV 319 (372)
T ss_dssp CCHHHHH----------HHHHHHHH-HHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHH
T ss_pred CchhhHH----------HHHHHHHH-HHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHH
Confidence 1111000 01122221 1234667999999999999999999999999999999999974 7788899999
Q ss_pred HHHcCChHHHHHHHHHHHhhcCCCHH
Q 045024 204 FLMLGNFRKGVEQFQLALKISSENVS 229 (1173)
Q Consensus 204 ~~~~g~~~~A~~~~~~al~~~p~~~~ 229 (1173)
+...|++++|++.|++++.++|..+.
T Consensus 320 ~~~~G~~~eA~e~~~~AlrL~P~~~t 345 (372)
T 3ly7_A 320 YEMKGMNREAADAYLTAFNLRPGANT 345 (372)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSCSHHH
T ss_pred HHHCCCHHHHHHHHHHHHhcCCCcCh
Confidence 99999999999999999999998753
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.33 E-value=3.1e-06 Score=100.63 Aligned_cols=98 Identities=10% Similarity=-0.003 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCC
Q 045024 127 WAFRRLGYLQLHHKKWSEAVQSLQHAIRG-----YPTS---PHLWEALGLAYHRLGMFSAAIKSYGRAIEL-----DDTS 193 (1173)
Q Consensus 127 ~a~~~la~~~~~~g~~~~A~~~l~~al~~-----~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~ 193 (1173)
.++..+|.+|..+|+|++|+.++++++.+ .|++ ...+.++|.+|..+|++++|+..|++++++ .|++
T Consensus 352 ~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~H 431 (490)
T 3n71_A 352 RLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSH 431 (490)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTS
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 34445555555555555555555555542 2233 334556666666666666666666666653 3444
Q ss_pred h---HHHHHHHHHHHHcCChHHHHHHHHHHHhhc
Q 045024 194 I---FPLLESGNIFLMLGNFRKGVEQFQLALKIS 224 (1173)
Q Consensus 194 ~---~a~~~la~~~~~~g~~~~A~~~~~~al~~~ 224 (1173)
+ .....++.++..+|.+++|...|.++.+..
T Consensus 432 p~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 432 PITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 334456666666677777777766665543
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.33 E-value=1.4e-06 Score=103.66 Aligned_cols=117 Identities=12% Similarity=0.023 Sum_probs=55.9
Q ss_pred HcCCHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCC---hHHHHHHH
Q 045024 138 HHKKWSEAVQSLQHAIRG-----YPTS---PHLWEALGLAYHRLGMFSAAIKSYGRAIEL-----DDTS---IFPLLESG 201 (1173)
Q Consensus 138 ~~g~~~~A~~~l~~al~~-----~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~---~~a~~~la 201 (1173)
.+|+|++|+..+++++++ .|++ ..++.++|.+|..+|+|++|+..+++++++ .|++ ...+.++|
T Consensus 321 ~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 400 (490)
T 3n71_A 321 SEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAG 400 (490)
T ss_dssp TTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHH
T ss_pred hCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 445555555555555542 2222 234445555555555555555555555543 2222 23344555
Q ss_pred HHHHHcCChHHHHHHHHHHHhh-----cCCCHH---HHHHHHHHHHHHHHHHHHhhcHHHH
Q 045024 202 NIFLMLGNFRKGVEQFQLALKI-----SSENVS---AHYGLASGLLGLAKQCINLGAFRWG 254 (1173)
Q Consensus 202 ~~~~~~g~~~~A~~~~~~al~~-----~p~~~~---a~~~la~~~~~l~~~~~a~g~~~~A 254 (1173)
.+|..+|++++|+..|++++++ .|+++. ....++.++..++....+...+..+
T Consensus 401 ~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~ 461 (490)
T 3n71_A 401 LTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKM 461 (490)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555555542 233332 2234444555555544444444444
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=98.20 E-value=7.4e-06 Score=73.62 Aligned_cols=74 Identities=15% Similarity=0.105 Sum_probs=58.1
Q ss_pred CCCCHHHHHHHHHHHHHccCc--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCH
Q 045024 18 NPDDPSLHLDLGLHLWENSES--KEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDS 92 (1173)
Q Consensus 18 ~P~~~~~~~~lg~~~~~~~~~--~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~ 92 (1173)
+|+++..+..+|.+++..++. .++|...|+++++.+|+++.+++.+|..++. .|+|++|+.+|+++++.+|.++
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~-~g~y~~Ai~~w~~~l~~~p~~~ 77 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFI-SFRFQEAIDTWVLLLDSNDPNL 77 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTCCCTTC
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhCCCCc
Confidence 677888888888887655442 4788888888888888888888888888888 8888888888888888877743
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=98.18 E-value=9.2e-05 Score=88.60 Aligned_cols=162 Identities=12% Similarity=-0.035 Sum_probs=113.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCC-------ChHHHHHHHHHHHHhC-CCCHHHHHHH
Q 045024 459 SADVQASESLVDDAFESCLRAVQI--LPLAEFQIGLAKLAKLSGHL-------SSSQVFGAIQQAIQRG-PHYPESHNLY 528 (1173)
Q Consensus 459 ~a~~~~~~g~~~eA~~~~~~al~~--~p~~~~~~~la~l~~~~g~~-------~~~~A~~~l~~al~~~-P~~~~a~~~l 528 (1173)
....+.+.|+.++|+++|+++.+. .|+...+..+-..+...+.. ..++|...|+++.... +-+..++..+
T Consensus 32 ~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~l 111 (501)
T 4g26_A 32 KLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATFTNG 111 (501)
T ss_dssp HHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 334555555555555555555543 23333333332222222211 1245677777776653 2377889999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-HHHHHHHHH
Q 045024 529 GLVCEARSDYQAAVVSYRLARYAISSSSGTVPNSHFQDISINLARSLSRAGNALDAVRECESLERQGMLD-AEVLQVYAF 607 (1173)
Q Consensus 529 g~i~~~~g~~~~A~~~~~kAl~l~~~~pe~~~~~~~~~~~~~La~~~~~~g~~~eAi~~~~~~~~~~p~~-~~~~~~la~ 607 (1173)
...+.+.|++++|.++|++..+. ...| ...+|..+...|.+.|+.++|.+.|+++.+.+..+ ...+..+..
T Consensus 112 I~~~~~~g~~~~A~~l~~~M~~~-g~~P-------d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~ 183 (501)
T 4g26_A 112 ARLAVAKDDPEMAFDMVKQMKAF-GIQP-------RLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLK 183 (501)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHT-TCCC-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHHHc-CCCC-------ccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Confidence 99999999999999999987432 1112 24578899999999999999999999999887654 567888999
Q ss_pred HHHHcCChHHHHHHHHHHhhh
Q 045024 608 SLWQLGKYDLALSMARNLASS 628 (1173)
Q Consensus 608 a~~~~g~~~eA~~~~~~aL~~ 628 (1173)
+|.+.|+.++|.++|+++.+.
T Consensus 184 ~~~~~g~~d~A~~ll~~Mr~~ 204 (501)
T 4g26_A 184 VSMDTKNADKVYKTLQRLRDL 204 (501)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhhCCCHHHHHHHHHHHHHh
Confidence 999999999999999998764
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=98.14 E-value=1.2e-05 Score=72.16 Aligned_cols=72 Identities=14% Similarity=0.091 Sum_probs=54.4
Q ss_pred CCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCC
Q 045024 156 YPTSPHLWEALGLAYHRLGM---FSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSEN 227 (1173)
Q Consensus 156 ~p~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 227 (1173)
+|+++..+..+|.+++..++ .++|...++++++.+|+++.+++.+|..++..|+|++|+..++++++.+|.+
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~ 76 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPN 76 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTT
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 56777777777777765555 5777777777777777777777777777777777777777777777777763
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.04 E-value=3.7e-05 Score=74.74 Aligned_cols=91 Identities=10% Similarity=-0.060 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhC-C-CChHHHHHHHHHHHHcCChHHHHHH
Q 045024 142 WSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLG---MFSAAIKSYGRAIELD-D-TSIFPLLESGNIFLMLGNFRKGVEQ 216 (1173)
Q Consensus 142 ~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~-p-~~~~a~~~la~~~~~~g~~~~A~~~ 216 (1173)
...+.+.|.+.+..+|.+.++.+.+|.++.+.+ +.++++..++.+++.+ | ++.+.++.+|..++++|+|++|+.+
T Consensus 14 l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y 93 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKY 93 (152)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHH
Confidence 345666777777777778888888888888877 5668888888888877 6 4577888888888888888888888
Q ss_pred HHHHHhhcCCCHHHHH
Q 045024 217 FQLALKISSENVSAHY 232 (1173)
Q Consensus 217 ~~~al~~~p~~~~a~~ 232 (1173)
++++++.+|++..+..
T Consensus 94 ~~~lL~ieP~n~QA~~ 109 (152)
T 1pc2_A 94 VRGLLQTEPQNNQAKE 109 (152)
T ss_dssp HHHHHHHCTTCHHHHH
T ss_pred HHHHHhcCCCCHHHHH
Confidence 8888888888876653
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=98.01 E-value=2.7e-05 Score=90.97 Aligned_cols=96 Identities=6% Similarity=-0.061 Sum_probs=82.1
Q ss_pred HcCCHHHHHHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCCHH---HHHHH
Q 045024 534 ARSDYQAAVVSYRLARYAISSSSGTVPNSHFQDISINLARSLSRAGNALDAVRECESLERQ-----GMLDAE---VLQVY 605 (1173)
Q Consensus 534 ~~g~~~~A~~~~~kAl~l~~~~pe~~~~~~~~~~~~~La~~~~~~g~~~eAi~~~~~~~~~-----~p~~~~---~~~~l 605 (1173)
..|+|++|+..|++++++.+..-+. ..+..+.++.+||.+|..+|+|++|+.+++++++. +|+++. .+.++
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~-~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nL 388 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFED-SNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKL 388 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCT-TSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccCh-hchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence 4689999999999999876654221 25778899999999999999999999999999865 677765 66899
Q ss_pred HHHHHHcCChHHHHHHHHHHhhhcc
Q 045024 606 AFSLWQLGKYDLALSMARNLASSVS 630 (1173)
Q Consensus 606 a~a~~~~g~~~eA~~~~~~aL~~~p 630 (1173)
|.+|..+|++++|+.+|+++++...
T Consensus 389 a~~~~~qg~~~eA~~~~~~Al~i~~ 413 (433)
T 3qww_A 389 GRLYMGLENKAAGEKALKKAIAIME 413 (433)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998654
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.00 E-value=4.7e-05 Score=74.03 Aligned_cols=88 Identities=11% Similarity=0.007 Sum_probs=41.7
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHhhC-C-CcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 045024 76 RAIKCYQRAVSLSPDDSVSGEALCELLEHGG---KESLEVVVCREASDKS-P-RAFWAFRRLGYLQLHHKKWSEAVQSLQ 150 (1173)
Q Consensus 76 eA~~~~~~al~~~p~~~~a~~~La~~~~~~g---~~~~A~~~~~~al~~~-p-~~~~a~~~la~~~~~~g~~~~A~~~l~ 150 (1173)
.+.+.|.+.++.+|.+.++.+.+|.++.+.+ +.++++..++.+++.+ | ++.+.++.+|..+++.|+|++|.++++
T Consensus 16 ~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~ 95 (152)
T 1pc2_A 16 KFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVR 95 (152)
T ss_dssp HHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 3444444444444444445555555554444 3334555555444444 3 234444445555555555555555555
Q ss_pred HHHHhCCCCHHHH
Q 045024 151 HAIRGYPTSPHLW 163 (1173)
Q Consensus 151 ~al~~~p~~~~~~ 163 (1173)
++++.+|++..+.
T Consensus 96 ~lL~ieP~n~QA~ 108 (152)
T 1pc2_A 96 GLLQTEPQNNQAK 108 (152)
T ss_dssp HHHHHCTTCHHHH
T ss_pred HHHhcCCCCHHHH
Confidence 5555555444443
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=97.97 E-value=0.00076 Score=80.63 Aligned_cols=164 Identities=10% Similarity=-0.035 Sum_probs=131.9
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCC---------HHHHHHHHHHHHhhCC-CcHH
Q 045024 59 AFRYLGHYYTRFSIDTQRAIKCYQRAVSLS-PDDSVSGEALCELLEHGGK---------ESLEVVVCREASDKSP-RAFW 127 (1173)
Q Consensus 59 a~~~lg~~~~~~~g~~~eA~~~~~~al~~~-p~~~~a~~~La~~~~~~g~---------~~~A~~~~~~al~~~p-~~~~ 127 (1173)
.+..+-..+.+ .|+.++|+..|+++.+.. +-+..++..+..++...+. .++|.++|+++....- .+..
T Consensus 28 ~l~~~id~c~k-~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ 106 (501)
T 4g26_A 28 LLKQKLDMCSK-KGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA 106 (501)
T ss_dssp HHHHHHHHTTT-SCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHHHHh-CCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHH
Confidence 34555677778 899999999999888754 2345667777766655443 6889999998876532 3677
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHH
Q 045024 128 AFRRLGYLQLHHKKWSEAVQSLQHAIRGY-PTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDD-TSIFPLLESGNIFL 205 (1173)
Q Consensus 128 a~~~la~~~~~~g~~~~A~~~l~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~la~~~~ 205 (1173)
+|..+...+.+.|++++|..+|+++.+.. +-+...|..+...|.+.|+.++|.+.|++..+..- .+...+..+...+.
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~ 186 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSM 186 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Confidence 88999999999999999999999988753 23678899999999999999999999999887642 36778899999999
Q ss_pred HcCChHHHHHHHHHHHhh
Q 045024 206 MLGNFRKGVEQFQLALKI 223 (1173)
Q Consensus 206 ~~g~~~~A~~~~~~al~~ 223 (1173)
+.|+.++|.++|+++.+.
T Consensus 187 ~~g~~d~A~~ll~~Mr~~ 204 (501)
T 4g26_A 187 DTKNADKVYKTLQRLRDL 204 (501)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred hCCCHHHHHHHHHHHHHh
Confidence 999999999999998764
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=97.80 E-value=0.00015 Score=84.89 Aligned_cols=107 Identities=7% Similarity=-0.123 Sum_probs=85.3
Q ss_pred HHHHcCCHHHHHHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCCHH---HH
Q 045024 531 VCEARSDYQAAVVSYRLARYAISSSSGTVPNSHFQDISINLARSLSRAGNALDAVRECESLERQ-----GMLDAE---VL 602 (1173)
Q Consensus 531 i~~~~g~~~~A~~~~~kAl~l~~~~pe~~~~~~~~~~~~~La~~~~~~g~~~eAi~~~~~~~~~-----~p~~~~---~~ 602 (1173)
-+...|++++|+..|+++++..+..-+ +..+..+.++.++|.+|..+|+|++|+..++++++. +|+++. .+
T Consensus 296 ~~~~~g~~~~a~~~~~~~L~~~~~~lg-~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l 374 (429)
T 3qwp_A 296 ELKAHWKWEQVLAMCQAIISSNSERLP-DINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQV 374 (429)
T ss_dssp HHHHTTCHHHHHHHHHHHHTCSSCCCC-TTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHH
T ss_pred HHHhhccHHHHHHHHHHHHHhccCcCC-ccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHH
Confidence 355789999999999999765443321 125778899999999999999999999999999865 667665 66
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHhhhccccccchhh
Q 045024 603 QVYAFSLWQLGKYDLALSMARNLASSVSAMEQSSAA 638 (1173)
Q Consensus 603 ~~la~a~~~~g~~~eA~~~~~~aL~~~p~~~~~~~~ 638 (1173)
.++|.+|..+|++++|+.+|+++++.....-....|
T Consensus 375 ~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp 410 (429)
T 3qwp_A 375 MKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHS 410 (429)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCh
Confidence 889999999999999999999998865433333333
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=97.75 E-value=0.0002 Score=65.69 Aligned_cols=76 Identities=13% Similarity=0.145 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHHccCcHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHH
Q 045024 22 PSLHLDLGLHLWENSESKEKAAEHFVIAAKLN-------PQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVS 94 (1173)
Q Consensus 22 ~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~-------p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a 94 (1173)
+.-.+.+|..++..++ |..|+..|+++++.. +..+.++..+|.++.+ .|++++|+..++++++++|++..+
T Consensus 5 a~dc~~lG~~~~~~~~-y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~-~g~~~~A~~~~~~al~l~P~~~~~ 82 (104)
T 2v5f_A 5 AEDCFELGKVAYTEAD-YYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQ-QGDLDKALLLTKKLLELDPEHQRA 82 (104)
T ss_dssp HHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHHHccc-hHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHH-ccCHHHHHHHHHHHHhcCCCCHHH
Confidence 4456677777777776 777777777777542 2345667777777777 777777777777777777777666
Q ss_pred HHHHH
Q 045024 95 GEALC 99 (1173)
Q Consensus 95 ~~~La 99 (1173)
...++
T Consensus 83 ~~n~~ 87 (104)
T 2v5f_A 83 NGNLK 87 (104)
T ss_dssp HHHHH
T ss_pred HhhHH
Confidence 55554
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=97.74 E-value=0.00028 Score=64.69 Aligned_cols=76 Identities=13% Similarity=-0.020 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCHHHHH
Q 045024 160 PHLWEALGLAYHRLGMFSAAIKSYGRAIELD-------DTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHY 232 (1173)
Q Consensus 160 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-------p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~ 232 (1173)
+.-.+.+|..++..|+|..|+..|+++++.. +....++..+|.++.++|++++|+..++++++.+|++..+..
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~ 84 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG 84 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHh
Confidence 3445566666666666666666666666542 223556666777777777777777777777777777665554
Q ss_pred HHH
Q 045024 233 GLA 235 (1173)
Q Consensus 233 ~la 235 (1173)
++.
T Consensus 85 n~~ 87 (104)
T 2v5f_A 85 NLK 87 (104)
T ss_dssp HHH
T ss_pred hHH
Confidence 443
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.68 E-value=0.00023 Score=83.11 Aligned_cols=82 Identities=11% Similarity=-0.047 Sum_probs=69.2
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----
Q 045024 520 HYPESHNLYGLVCEARSDYQAAVVSYRLARYAISSSSGTVPNSHFQDISINLARSLSRAGNALDAVRECESLERQ----- 594 (1173)
Q Consensus 520 ~~~~a~~~lg~i~~~~g~~~~A~~~~~kAl~l~~~~pe~~~~~~~~~~~~~La~~~~~~g~~~eAi~~~~~~~~~----- 594 (1173)
+...++.++|.+|..+|+|++|+.+|++++.+.+..-+. ..|..+..+++||.+|..+|++++|+..|++++++
T Consensus 338 ~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~-~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~l 416 (433)
T 3qww_A 338 YMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPV-YSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAH 416 (433)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCS-SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCC-CChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHc
Confidence 344577899999999999999999999999887754221 26788999999999999999999999999999765
Q ss_pred CCCCHHHH
Q 045024 595 GMLDAEVL 602 (1173)
Q Consensus 595 ~p~~~~~~ 602 (1173)
+|+++.+.
T Consensus 417 G~~Hp~~~ 424 (433)
T 3qww_A 417 GKDHPYIS 424 (433)
T ss_dssp CTTCHHHH
T ss_pred CCCChHHH
Confidence 78887654
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=97.56 E-value=0.00021 Score=83.57 Aligned_cols=124 Identities=12% Similarity=0.003 Sum_probs=92.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhh-----CCCChh---HHHHhHHHHHHhcCCHHHHHHHHHHHHhcCCchHHHHHHHHHH
Q 045024 425 GKLYGEVGEKKLARQAFDSARSI-----DPSLAL---PWAGMSADVQASESLVDDAFESCLRAVQILPLAEFQIGLAKLA 496 (1173)
Q Consensus 425 g~~y~~~g~~e~A~~~f~~al~~-----~P~~~~---a~~~l~a~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~la~l~ 496 (1173)
..-+...|++++|+..|++++++ .|+++. .+.+ ++.+|..+|++++|+.++++++.+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~-L~~~y~~~g~~~eA~~~~~~~L~i-------------- 358 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDC-AMDACINLGLLEEALFYGTRTMEP-------------- 358 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHH-HHHHHHHHTCHHHHHHHHHHHHHH--------------
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHH-HHHHHHhhccHHHHHHHHHHHHHh--------------
Confidence 33455789999999999999975 456644 3444 677999999999999999987764
Q ss_pred HHhCCCChHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHH
Q 045024 497 KLSGHLSSSQVFGAIQQAIQ-RGPHYPESHNLYGLVCEARSDYQAAVVSYRLARYAISSSSGTVPNSHFQDISINLARSL 575 (1173)
Q Consensus 497 ~~~g~~~~~~A~~~l~~al~-~~P~~~~a~~~lg~i~~~~g~~~~A~~~~~kAl~l~~~~pe~~~~~~~~~~~~~La~~~ 575 (1173)
+++.+. .+|+....++++|.+|..+|++++|+.+|++|+++.+..-+. +.|....++.+|+.+.
T Consensus 359 --------------~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~-~Hp~~~~~~~~l~~~~ 423 (429)
T 3qwp_A 359 --------------YRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGR-EHSLIEDLILLLEECD 423 (429)
T ss_dssp --------------HHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCT-TSHHHHHHHHHHHHHH
T ss_pred --------------HHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC-CChHHHHHHHHHHHHH
Confidence 222221 134455678999999999999999999999999988765322 1466777778888776
Q ss_pred Hhc
Q 045024 576 SRA 578 (1173)
Q Consensus 576 ~~~ 578 (1173)
..+
T Consensus 424 ~e~ 426 (429)
T 3qwp_A 424 ANI 426 (429)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=97.25 E-value=0.0026 Score=59.43 Aligned_cols=89 Identities=12% Similarity=0.015 Sum_probs=43.7
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHH---HHHHHHHHHhhC-C-CcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 045024 76 RAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESL---EVVVCREASDKS-P-RAFWAFRRLGYLQLHHKKWSEAVQSLQ 150 (1173)
Q Consensus 76 eA~~~~~~al~~~p~~~~a~~~La~~~~~~g~~~~---A~~~~~~al~~~-p-~~~~a~~~la~~~~~~g~~~~A~~~l~ 150 (1173)
.+...|.+.+..++.+..+.+.+|..+.+..+... ++..++..++.+ | ..-+..+.+|..+++.|+|++|..+++
T Consensus 19 ~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~ 98 (126)
T 1nzn_A 19 KFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVR 98 (126)
T ss_dssp HHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 34444444444444555555555555555444333 555555554443 2 234445555555555555555555555
Q ss_pred HHHHhCCCCHHHHH
Q 045024 151 HAIRGYPTSPHLWE 164 (1173)
Q Consensus 151 ~al~~~p~~~~~~~ 164 (1173)
..++..|++..+..
T Consensus 99 ~lL~~eP~n~QA~~ 112 (126)
T 1nzn_A 99 GLLQTEPQNNQAKE 112 (126)
T ss_dssp HHHHHCTTCHHHHH
T ss_pred HHHHhCCCCHHHHH
Confidence 55555555544433
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=97.25 E-value=0.0026 Score=59.50 Aligned_cols=90 Identities=10% Similarity=-0.050 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH---HHHHHHHHHHhC-C-CChHHHHHHHHHHHHcCChHHHHHH
Q 045024 142 WSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSA---AIKSYGRAIELD-D-TSIFPLLESGNIFLMLGNFRKGVEQ 216 (1173)
Q Consensus 142 ~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~---A~~~~~~al~~~-p-~~~~a~~~la~~~~~~g~~~~A~~~ 216 (1173)
...+...|.+....++.+..+.+.+|.++.+..+... ++..++..+..+ | ...+.++.+|..++++|+|++|..+
T Consensus 17 l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~ 96 (126)
T 1nzn_A 17 LLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKY 96 (126)
T ss_dssp HHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 4455566666666666777777777777777776665 777777777665 3 3556777788888888888888888
Q ss_pred HHHHHhhcCCCHHHH
Q 045024 217 FQLALKISSENVSAH 231 (1173)
Q Consensus 217 ~~~al~~~p~~~~a~ 231 (1173)
++.+++..|++..+.
T Consensus 97 ~~~lL~~eP~n~QA~ 111 (126)
T 1nzn_A 97 VRGLLQTEPQNNQAK 111 (126)
T ss_dssp HHHHHHHCTTCHHHH
T ss_pred HHHHHHhCCCCHHHH
Confidence 888888888877665
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=97.23 E-value=0.0054 Score=58.45 Aligned_cols=109 Identities=12% Similarity=-0.006 Sum_probs=72.1
Q ss_pred hCCCCHHHHHHHHHHHHHCCCH------HHHHHHHHHHHhhCCC--------cHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 045024 87 LSPDDSVSGEALCELLEHGGKE------SLEVVVCREASDKSPR--------AFWAFRRLGYLQLHHKKWSEAVQSLQHA 152 (1173)
Q Consensus 87 ~~p~~~~a~~~La~~~~~~g~~------~~A~~~~~~al~~~p~--------~~~a~~~la~~~~~~g~~~~A~~~l~~a 152 (1173)
+.|++++.|..........|+. ++-++.|++++..-|. ....|...+.. ...+|.++|.+.|+.+
T Consensus 8 ~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a 86 (161)
T 4h7y_A 8 MMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQMA 86 (161)
T ss_dssp --CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHH
T ss_pred eCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHH
Confidence 3466666666666666555666 5666666666555443 13344455543 4557788888888888
Q ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHH
Q 045024 153 IRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFP 196 (1173)
Q Consensus 153 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a 196 (1173)
+......+.+|...|....++|+.+.|.+.+.+++.+.|.....
T Consensus 87 ~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~ 130 (161)
T 4h7y_A 87 RANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEM 130 (161)
T ss_dssp HHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHH
Confidence 77776677778888888888888888888888888877765443
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=96.92 E-value=0.0078 Score=57.39 Aligned_cols=106 Identities=15% Similarity=0.101 Sum_probs=56.6
Q ss_pred hCCCCHHHHHHHHHHHHHccCcH------HHHHHHHHHHHHhCCCC--------HHHHHHHHHHHHHccCCHHHHHHHHH
Q 045024 17 ANPDDPSLHLDLGLHLWENSESK------EKAAEHFVIAAKLNPQN--------AVAFRYLGHYYTRFSIDTQRAIKCYQ 82 (1173)
Q Consensus 17 ~~P~~~~~~~~lg~~~~~~~~~~------~~A~~~~~~al~~~p~~--------~~a~~~lg~~~~~~~g~~~eA~~~~~ 82 (1173)
..|++++.|+......-..|+ + ++-++.|++++..-|.. ...|...+.. .. .+|.++|...|+
T Consensus 8 ~~p~~yd~W~~yl~llE~~g~-p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~e-i~D~d~aR~vy~ 84 (161)
T 4h7y_A 8 MMANNPEDWLSLLLKLEKNSV-PLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KA-IQEPDDARDYFQ 84 (161)
T ss_dssp --CCSHHHHHHHHHHHHHHTC-SCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HH-HHCGGGCHHHHH
T ss_pred eCCCCHHHHHHHHHHHHHcCC-CchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HH-hcCHHHHHHHHH
Confidence 456666666666665555544 4 55556666666444331 2334444433 34 455556666666
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc
Q 045024 83 RAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRA 125 (1173)
Q Consensus 83 ~al~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~ 125 (1173)
.++.+......+|...|..-.++|+...|...+.+++...|..
T Consensus 85 ~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 85 MARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp HHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred HHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence 6555554555555555555555555555555555555555544
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.59 E-value=0.0071 Score=59.04 Aligned_cols=34 Identities=18% Similarity=0.070 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCC
Q 045024 523 ESHNLYGLVCEARSDYQAAVVSYRLARYAISSSS 556 (1173)
Q Consensus 523 ~a~~~lg~i~~~~g~~~~A~~~~~kAl~l~~~~p 556 (1173)
.++..+|+.++..|+|..|...|++|+......+
T Consensus 64 ~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~ 97 (167)
T 3ffl_A 64 QLLVYHADSLFHDKEYRNAVSKYTMALQQKKALS 97 (167)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHh
Confidence 4778999999999999999999999988766543
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.33 E-value=0.043 Score=53.55 Aligned_cols=121 Identities=12% Similarity=-0.048 Sum_probs=89.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc------C
Q 045024 522 PESHNLYGLVCEARSDYQAAVVSYRLARYAISSSSGTVPNSHFQDISINLARSLSRAGNALDAVRECESLERQ------G 595 (1173)
Q Consensus 522 ~~a~~~lg~i~~~~g~~~~A~~~~~kAl~l~~~~pe~~~~~~~~~~~~~La~~~~~~g~~~eAi~~~~~~~~~------~ 595 (1173)
-.++..-..-+...|.|+.|+-....++.+.+.+++.........++..+|.++...|+|..|...|++++.. .
T Consensus 20 ~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~ 99 (167)
T 3ffl_A 20 HMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKT 99 (167)
T ss_dssp -CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC---
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcC
Confidence 3355666777888999999999999998887766653333455678899999999999999999999997543 1
Q ss_pred C-------------------CCHHHHHHHHHHHHHcCChHHHHHHHHHHhhhccccccchhhhhHHHHHHHH
Q 045024 596 M-------------------LDAEVLQVYAFSLWQLGKYDLALSMARNLASSVSAMEQSSAAASVSFICRLL 648 (1173)
Q Consensus 596 p-------------------~~~~~~~~la~a~~~~g~~~eA~~~~~~aL~~~p~~~~~~~~~~~~~la~l~ 648 (1173)
+ .+.+..+.++.+|.+.|++++|+..++.+=. ....|.+-..||+++
T Consensus 100 ~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~------k~Rt~kvnm~LakLy 165 (167)
T 3ffl_A 100 SKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPS------RQRTPKINMLLANLY 165 (167)
T ss_dssp -----------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCG------GGCCHHHHHHHHHHC
T ss_pred CCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCc------hhcCHHHHHHHHHHh
Confidence 1 1125678899999999999999988876522 124456666666654
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=96.19 E-value=0.38 Score=54.62 Aligned_cols=180 Identities=10% Similarity=0.035 Sum_probs=115.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhHHHHhHHH----HHHh-cCCHHHHHHHHHHHHhcCCchHHHHHHH
Q 045024 419 DAWAHIGKLYGEVGEKKLARQAFDSARSIDPSLALPWAGMSAD----VQAS-ESLVDDAFESCLRAVQILPLAEFQIGLA 493 (1173)
Q Consensus 419 ~a~~~Lg~~y~~~g~~e~A~~~f~~al~~~P~~~~a~~~l~a~----~~~~-~g~~~eA~~~~~~al~~~p~~~~~~~la 493 (1173)
.+.+.||.+|.+.|++++-.+.+......-+..+.+....+.. .+.. .+..+.-++++..+++
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~------------ 87 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIE------------ 87 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHH------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH------------
Confidence 4678899999999999999988887655544444443322111 1111 1111111111111111
Q ss_pred HHHHHhCCCChHHHHHHHHHHHHhCCCCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCCCCCCCchHHHHHHH
Q 045024 494 KLAKLSGHLSSSQVFGAIQQAIQRGPHYPE--SHNLYGLVCEARSDYQAAVVSYRLARYAISSSSGTVPNSHFQDISINL 571 (1173)
Q Consensus 494 ~l~~~~g~~~~~~A~~~l~~al~~~P~~~~--a~~~lg~i~~~~g~~~~A~~~~~kAl~l~~~~pe~~~~~~~~~~~~~L 571 (1173)
-+-......-. .-..+|.+|...|+|.+|.+.+.+.++-+.... .......++..-
T Consensus 88 -------------------~a~~~~r~flr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~d---d~~~llev~lle 145 (394)
T 3txn_A 88 -------------------WAKQEKRTFLRQSLEARLIALYFDTALYTEALALGAQLLRELKKLD---DKNLLVEVQLLE 145 (394)
T ss_dssp -------------------HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSS---CTHHHHHHHHHH
T ss_pred -------------------HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccc---cchhHHHHHHHH
Confidence 11111011111 224789999999999999999999876655422 245677888889
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcC---CCCHH----HHHHHHHHHH-HcCChHHHHHHHHHHhhhcccc
Q 045024 572 ARSLSRAGNALDAVRECESLERQG---MLDAE----VLQVYAFSLW-QLGKYDLALSMARNLASSVSAM 632 (1173)
Q Consensus 572 a~~~~~~g~~~eAi~~~~~~~~~~---p~~~~----~~~~la~a~~-~~g~~~eA~~~~~~aL~~~p~~ 632 (1173)
.++|...|++.++...+.++.... +.+|. ....-|..+. ..++|.+|...|-++.+..++.
T Consensus 146 ~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~ 214 (394)
T 3txn_A 146 SKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFEGFDSV 214 (394)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhccccc
Confidence 999999999999999999886442 12332 3355788888 8999999999999888755543
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=95.76 E-value=0.17 Score=47.95 Aligned_cols=72 Identities=7% Similarity=-0.079 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHcCCHH---HHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCHHHH
Q 045024 160 PHLWEALGLAYHRLGMFS---AAIKSYGRAIELDDT-SIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAH 231 (1173)
Q Consensus 160 ~~~~~~la~~~~~~g~~~---~A~~~~~~al~~~p~-~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~ 231 (1173)
+.+.+.+|.++.+..+.+ +++..++..+...|. ..+.++.+|..++++|+|++|..+.+.+++..|+|..+.
T Consensus 39 ~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~ 114 (144)
T 1y8m_A 39 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVG 114 (144)
T ss_dssp HHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHH
Confidence 444444444444433322 344444444444442 234444445555555555555555555555555544433
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=95.71 E-value=0.24 Score=46.94 Aligned_cols=81 Identities=10% Similarity=0.007 Sum_probs=69.7
Q ss_pred CCcHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHH
Q 045024 123 PRAFWAFRRLGYLQLHHKKW---SEAVQSLQHAIRGYP-TSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLL 198 (1173)
Q Consensus 123 p~~~~a~~~la~~~~~~g~~---~~A~~~l~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~ 198 (1173)
.-.+.+.+.+|.++.+..+. .+++..++..++..| ..-+.++.+|..+++.|+|++|.++.+.+++..|++..+..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~ 115 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 115 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence 45688999999999988765 579999999999988 46778999999999999999999999999999999987765
Q ss_pred HHHHH
Q 045024 199 ESGNI 203 (1173)
Q Consensus 199 ~la~~ 203 (1173)
....+
T Consensus 116 Lk~~I 120 (144)
T 1y8m_A 116 LKSMV 120 (144)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 54433
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=95.35 E-value=0.15 Score=47.80 Aligned_cols=52 Identities=15% Similarity=0.116 Sum_probs=21.6
Q ss_pred HHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHH
Q 045024 145 AVQSLQHAIRGYP-TSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFP 196 (1173)
Q Consensus 145 A~~~l~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a 196 (1173)
++..++..++.+| ..-+.++.+|..+.+.|+|++|.++.+.+++..|++..+
T Consensus 62 GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA 114 (134)
T 3o48_A 62 GVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV 114 (134)
T ss_dssp HHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHH
T ss_pred HHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHH
Confidence 3444444444333 223334444444444444444444444444444444333
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=95.32 E-value=0.17 Score=47.33 Aligned_cols=77 Identities=6% Similarity=-0.107 Sum_probs=66.9
Q ss_pred CCHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCHHHHHH
Q 045024 158 TSPHLWEALGLAYHRLGMF---SAAIKSYGRAIELDDT-SIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYG 233 (1173)
Q Consensus 158 ~~~~~~~~la~~~~~~g~~---~~A~~~~~~al~~~p~-~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~ 233 (1173)
-.+.+.+.+|.++.+..+. ..++..++..++.+|. ..+.++.+|..+.++|+|++|..+.+.+++..|+|..+...
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~L 117 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGAL 117 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHH
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHH
Confidence 3578889999999987765 4689999999998884 57889999999999999999999999999999999887643
Q ss_pred H
Q 045024 234 L 234 (1173)
Q Consensus 234 l 234 (1173)
.
T Consensus 118 k 118 (134)
T 3o48_A 118 K 118 (134)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=95.01 E-value=2 Score=41.46 Aligned_cols=102 Identities=20% Similarity=0.172 Sum_probs=72.9
Q ss_pred CCCCHHHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhh----------
Q 045024 18 NPDDPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSL---------- 87 (1173)
Q Consensus 18 ~P~~~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~---------- 87 (1173)
-|..++....++..++-.|+ |..++-.+.+ -+...+.+....+|.. .+++..|+..++..++-
T Consensus 29 ~~~~~eY~lL~~I~LyyngE-Y~R~Lf~L~~-----lNT~Ts~YYk~LCy~k-lKdYkkA~~~le~il~~kvd~d~~~d~ 101 (242)
T 3kae_A 29 LPCKPEYRMLMSIVLYLNGE-YTRALFHLHK-----LNTCTSKYYESLCYKK-KKDYKKAIKSLESILEGKVERDPDVDA 101 (242)
T ss_dssp C----CTHHHHHHHHHHTTC-HHHHHHHHHT-----CCBHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCSBCCCCCCH
T ss_pred ccCChHHHhhhhhhhhhcch-HhHHHHHHHh-----cchHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcccccCccccc
Confidence 45556667778888888887 8888776553 4557778888889999 99999999999998832
Q ss_pred -------CCCCHHH-HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcH
Q 045024 88 -------SPDDSVS-GEALCELLEHGGKESLEVVVCREASDKSPRAF 126 (1173)
Q Consensus 88 -------~p~~~~a-~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~ 126 (1173)
+|.+.+. +..+|.++...|+.++|+.++.......|-.+
T Consensus 102 ~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf~ 148 (242)
T 3kae_A 102 RIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFLFS 148 (242)
T ss_dssp HHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred ccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCccccc
Confidence 2333333 56677788888888888888888777776543
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=94.62 E-value=0.84 Score=51.79 Aligned_cols=166 Identities=14% Similarity=0.114 Sum_probs=104.7
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHH-----HHHHHHHHHH-CCCHHHHHHHHHHHHhhCCCc--H--H-
Q 045024 59 AFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVS-----GEALCELLEH-GGKESLEVVVCREASDKSPRA--F--W- 127 (1173)
Q Consensus 59 a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a-----~~~La~~~~~-~g~~~~A~~~~~~al~~~p~~--~--~- 127 (1173)
+.+.+|..|.. .|++++-.+.+......-+.-+.+ ...+-..+.. .+..+.-++.+..+++-..+. . .
T Consensus 21 ~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~ 99 (394)
T 3txn_A 21 GILQQGELYKQ-EGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQ 99 (394)
T ss_dssp HHHHHHHHHHH-HTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777 777777666666554333222222 1222222222 233444455555554432111 1 1
Q ss_pred -HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCh---
Q 045024 128 -AFRRLGYLQLHHKKWSEAVQSLQHAIRGYP--TS----PHLWEALGLAYHRLGMFSAAIKSYGRAIELD---DTSI--- 194 (1173)
Q Consensus 128 -a~~~la~~~~~~g~~~~A~~~l~~al~~~p--~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---p~~~--- 194 (1173)
.-..+|..|+..|+|.+|...+.+..+.-. ++ .+.+..-..+|...|++.++...+.++.... +.++
T Consensus 100 ~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~ 179 (394)
T 3txn_A 100 SLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQ 179 (394)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHH
Confidence 223789999999999999999988876322 11 4566677888999999999999999987643 1222
Q ss_pred -HHHHHHHHHHH-HcCChHHHHHHHHHHHhhcC
Q 045024 195 -FPLLESGNIFL-MLGNFRKGVEQFQLALKISS 225 (1173)
Q Consensus 195 -~a~~~la~~~~-~~g~~~~A~~~~~~al~~~p 225 (1173)
.....-|.++. ..++|.+|...|-++++...
T Consensus 180 a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~ 212 (394)
T 3txn_A 180 GALDLQSGILHAADERDFKTAFSYFYEAFEGFD 212 (394)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhhHHHHHhccCHHHHHHHHHHHHhccc
Confidence 33445678888 89999999999988876443
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.46 E-value=0.42 Score=58.87 Aligned_cols=115 Identities=11% Similarity=0.107 Sum_probs=72.4
Q ss_pred CCC-HHHHHHHHHHHHhhCCCcHHHHHHHHHHHH--H-cCCHHHHHHHHHHHHHh--------CCCC----------HHH
Q 045024 105 GGK-ESLEVVVCREASDKSPRAFWAFRRLGYLQL--H-HKKWSEAVQSLQHAIRG--------YPTS----------PHL 162 (1173)
Q Consensus 105 ~g~-~~~A~~~~~~al~~~p~~~~a~~~la~~~~--~-~g~~~~A~~~l~~al~~--------~p~~----------~~~ 162 (1173)
.|+ ++.|+..+++....+|.....+ ..+.+.. . ..+--+|+..+.+.++. .+.+ ...
T Consensus 261 t~~~~~~a~~~le~L~~~~p~~~~~~-~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~L 339 (754)
T 4gns_B 261 TPSLVDFTIDYLKGLTKKDPIHDIYY-KTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSDL 339 (754)
T ss_dssp CGGGHHHHHHHHHHHHHHCGGGHHHH-HHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhhCCchhHHH-HHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchHH
Confidence 444 4667777777777766543222 1222111 1 12334566666555531 2222 224
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHH
Q 045024 163 WEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLA 220 (1173)
Q Consensus 163 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~a 220 (1173)
+..-+..+...|+++-|+++.++++...|.....|+.|+.+|..+|+|+.|+-.+..+
T Consensus 340 L~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 340 LNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 4445667777888888888888888888888888888888888888888888766654
|
| >3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=93.40 E-value=6 Score=38.25 Aligned_cols=101 Identities=14% Similarity=0.105 Sum_probs=74.2
Q ss_pred cCCCHHHHHHHHHhhcccHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--h-------------
Q 045024 383 EGDNCQFWVTLGCLSNYNGLKQHALIRGLQLDVSLADAWAHIGKLYGEVGEKKLARQAFDSARS--I------------- 447 (1173)
Q Consensus 383 ~p~~~~~~~~Lg~~~~~~~~a~~a~~kal~l~p~~~~a~~~Lg~~y~~~g~~e~A~~~f~~al~--~------------- 447 (1173)
-|..++.-..++.+++-.++.-+++--...++ ...+.+.-..+|.+.+++..|+..++..+. +
T Consensus 29 ~~~~~eY~lL~~I~LyyngEY~R~Lf~L~~lN--T~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~f 106 (242)
T 3kae_A 29 LPCKPEYRMLMSIVLYLNGEYTRALFHLHKLN--TCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEM 106 (242)
T ss_dssp C----CTHHHHHHHHHHTTCHHHHHHHHHTCC--BHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTT
T ss_pred ccCChHHHhhhhhhhhhcchHhHHHHHHHhcc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCccccccccee
Confidence 34444555566666655555545544444443 577778889999999999999999999993 2
Q ss_pred --CCCChhHHHHhHHHHHHhcCCHHHHHHHHHHHHhcCCc
Q 045024 448 --DPSLALPWAGMSADVQASESLVDDAFESCLRAVQILPL 485 (1173)
Q Consensus 448 --~P~~~~a~~~l~a~~~~~~g~~~eA~~~~~~al~~~p~ 485 (1173)
+|.+.+......|.++.+.|+.+||+..|.......|.
T Consensus 107 fvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~l 146 (242)
T 3kae_A 107 FVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFL 146 (242)
T ss_dssp SCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred eeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCccc
Confidence 46666777777888999999999999999999998884
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.19 E-value=0.32 Score=59.98 Aligned_cols=115 Identities=13% Similarity=0.055 Sum_probs=82.4
Q ss_pred cCC-HHHHHHHHHHHHhhCCCCHHHHHHHHHHHH--HC-CCHHHHHHHHHHHHhh--------CCCc----------HHH
Q 045024 71 SID-TQRAIKCYQRAVSLSPDDSVSGEALCELLE--HG-GKESLEVVVCREASDK--------SPRA----------FWA 128 (1173)
Q Consensus 71 ~g~-~~eA~~~~~~al~~~p~~~~a~~~La~~~~--~~-g~~~~A~~~~~~al~~--------~p~~----------~~a 128 (1173)
.|+ ++.|+..|++..+.+|..... +..+.+.. .. .+--+|+..+.+.++. .+.+ ...
T Consensus 261 t~~~~~~a~~~le~L~~~~p~~~~~-~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~L 339 (754)
T 4gns_B 261 TPSLVDFTIDYLKGLTKKDPIHDIY-YKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSDL 339 (754)
T ss_dssp CGGGHHHHHHHHHHHHHHCGGGHHH-HHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhhCCchhHH-HHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchHH
Confidence 445 577999999988888865432 22222222 22 2344566666666532 2222 234
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 045024 129 FRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRA 186 (1173)
Q Consensus 129 ~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 186 (1173)
+...+..+...|+++-|+.+.++++...|.....|+.|+.+|..+|+|+.|+-.++.+
T Consensus 340 L~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 340 LNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 5556777788999999999999999999999999999999999999999999776654
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.62 E-value=0.64 Score=58.38 Aligned_cols=102 Identities=7% Similarity=-0.081 Sum_probs=81.7
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh--cCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 045024 521 YPESHNLYGLVCEARSDYQAAVVSYRLARYAIS--SSSGTVPNSHFQDISINLARSLSRAGNALDAVRECESLERQGMLD 598 (1173)
Q Consensus 521 ~~~a~~~lg~i~~~~g~~~~A~~~~~kAl~l~~--~~pe~~~~~~~~~~~~~La~~~~~~g~~~eAi~~~~~~~~~~p~~ 598 (1173)
....++.+...+.+.|+.++|.++|+...+... ..| ...+|+.+...|++.|+.++|.+.|+++.+.+..+
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~P-------dvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~P 198 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLL-------TLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTP 198 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTC-------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCC-------CHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Confidence 455788999999999999999999987643322 112 24589999999999999999999999999887654
Q ss_pred -HHHHHHHHHHHHHcCCh-HHHHHHHHHHhhhc
Q 045024 599 -AEVLQVYAFSLWQLGKY-DLALSMARNLASSV 629 (1173)
Q Consensus 599 -~~~~~~la~a~~~~g~~-~eA~~~~~~aL~~~ 629 (1173)
..++..+-..+.+.|+. ++|.++|+++.+..
T Consensus 199 DvvTYntLI~glcK~G~~~e~A~~Ll~EM~~kG 231 (1134)
T 3spa_A 199 DLLSYAAALQCMGRQDQDAGTIERCLEQMSQEG 231 (1134)
T ss_dssp CHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC
Confidence 55777778889999985 78899999987643
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=92.00 E-value=3.4 Score=51.91 Aligned_cols=96 Identities=18% Similarity=0.146 Sum_probs=64.0
Q ss_pred HccCcHHHHHH-HHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHH
Q 045024 34 ENSESKEKAAE-HFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEV 112 (1173)
Q Consensus 34 ~~~~~~~~A~~-~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~~g~~~~A~ 112 (1173)
..++ +++|.. .+.. -| +......+...+.. .|.+++|+...+ ++...+ .+....|++++|.
T Consensus 611 ~~~~-~~~a~~~~l~~----i~-~~~~~~~~~~~l~~-~~~~~~a~~~~~--------~~~~~f---~~~l~~~~~~~A~ 672 (814)
T 3mkq_A 611 LRGE-IEEAIENVLPN----VE-GKDSLTKIARFLEG-QEYYEEALNISP--------DQDQKF---ELALKVGQLTLAR 672 (814)
T ss_dssp HTTC-HHHHHHHTGGG----CC-CHHHHHHHHHHHHH-TTCHHHHHHHCC--------CHHHHH---HHHHHHTCHHHHH
T ss_pred HhCC-HHHHHHHHHhc----CC-chHHHHHHHHHHHh-CCChHHheecCC--------Ccchhe---ehhhhcCCHHHHH
Confidence 3454 788766 4311 11 02223566667777 888888876542 233222 3456788999998
Q ss_pred HHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 045024 113 VVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHA 152 (1173)
Q Consensus 113 ~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~a 152 (1173)
+..+. .+++..|..+|..+...++++.|+.+|.++
T Consensus 673 ~~~~~-----~~~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 673 DLLTD-----ESAEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHTT-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHh-----hCcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 87543 356788999999999999999999999876
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=91.80 E-value=4 Score=51.17 Aligned_cols=74 Identities=11% Similarity=-0.106 Sum_probs=52.0
Q ss_pred HHHHHHHHccCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCC
Q 045024 27 DLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGG 106 (1173)
Q Consensus 27 ~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~~g 106 (1173)
.....+...+. +++|++..+ ++... -..... .|++++|.+..+. .++...|..+|..+.+.|
T Consensus 634 ~~~~~l~~~~~-~~~a~~~~~--------~~~~~---f~~~l~-~~~~~~A~~~~~~-----~~~~~~W~~la~~al~~~ 695 (814)
T 3mkq_A 634 KIARFLEGQEY-YEEALNISP--------DQDQK---FELALK-VGQLTLARDLLTD-----ESAEMKWRALGDASLQRF 695 (814)
T ss_dssp HHHHHHHHTTC-HHHHHHHCC--------CHHHH---HHHHHH-HTCHHHHHHHHTT-----CCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhCCC-hHHheecCC--------Ccchh---eehhhh-cCCHHHHHHHHHh-----hCcHhHHHHHHHHHHHcC
Confidence 33444444444 677765442 23222 234567 8999999987543 467889999999999999
Q ss_pred CHHHHHHHHHHH
Q 045024 107 KESLEVVVCREA 118 (1173)
Q Consensus 107 ~~~~A~~~~~~a 118 (1173)
+++.|+.+|.++
T Consensus 696 ~~~~A~~~y~~~ 707 (814)
T 3mkq_A 696 NFKLAIEAFTNA 707 (814)
T ss_dssp CHHHHHHHHHHH
T ss_pred CHHHHHHHHHHc
Confidence 999999999876
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=91.73 E-value=3.9 Score=40.45 Aligned_cols=54 Identities=20% Similarity=0.242 Sum_probs=31.6
Q ss_pred CHHHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 045024 21 DPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRA 84 (1173)
Q Consensus 21 ~~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~a 84 (1173)
|++..|.++. +.|+ ++.|.+..+.. ++...|..+|..... .|+++-|..+|+++
T Consensus 7 D~~~rF~LAL---~lg~-l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~-~gn~~lAe~cy~~~ 60 (177)
T 3mkq_B 7 DPHIRFDLAL---EYGN-LDAALDEAKKL-----NDSITWERLIQEALA-QGNASLAEMIYQTQ 60 (177)
T ss_dssp CHHHHHHHHH---HTTC-HHHHHHHHHHH-----CCHHHHHHHHHHHHH-TTCHHHHHHHHHHT
T ss_pred ChHHHHHHHH---hcCC-HHHHHHHHHHh-----CCHHHHHHHHHHHHH-cCChHHHHHHHHHh
Confidence 4455555553 4444 66666655443 445666666666666 66666666666654
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=91.66 E-value=11 Score=43.77 Aligned_cols=104 Identities=13% Similarity=0.018 Sum_probs=76.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--C----ChHHHHHHHHHHHHcCChHHHHHHHHHHHh---hcCCCHHH
Q 045024 160 PHLWEALGLAYHRLGMFSAAIKSYGRAIELDD--T----SIFPLLESGNIFLMLGNFRKGVEQFQLALK---ISSENVSA 230 (1173)
Q Consensus 160 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~----~~~a~~~la~~~~~~g~~~~A~~~~~~al~---~~p~~~~a 230 (1173)
......|+.+|...|++.+|...+.....-.- . -.+.+.....++...+++.+|...++++.. ..+..+.
T Consensus 137 arl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~- 215 (445)
T 4b4t_P 137 ARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYES- 215 (445)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHH-
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHH-
Confidence 34556788888888999999888887653211 1 146677888899999999999999998743 2233332
Q ss_pred HHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHH
Q 045024 231 HYGLASGLLGLAKQCINLGAFRWGASLLEDACKVAE 266 (1173)
Q Consensus 231 ~~~la~~~~~l~~~~~a~g~~~~A~~~l~~Al~~~~ 266 (1173)
..+..+...|..+...++|.+|...|-++...+.
T Consensus 216 --lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~ 249 (445)
T 4b4t_P 216 --LKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDA 249 (445)
T ss_dssp --HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhccc
Confidence 4566777888888889999999988888877554
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=90.99 E-value=1 Score=51.33 Aligned_cols=95 Identities=13% Similarity=0.025 Sum_probs=70.9
Q ss_pred HHcCCHHHHHHHHHHHHHHhhcC--CCCCC-----------CCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCH
Q 045024 533 EARSDYQAAVVSYRLARYAISSS--SGTVP-----------NSHFQDISINLARSLSRAGNALDAVRECESLERQGMLDA 599 (1173)
Q Consensus 533 ~~~g~~~~A~~~~~kAl~l~~~~--pe~~~-----------~~~~~~~~~~La~~~~~~g~~~eAi~~~~~~~~~~p~~~ 599 (1173)
...|+.+.|...+++|+.+..-. ++... ...+..+...++..+...|++++|+..+..++..+|.+.
T Consensus 126 ~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E 205 (388)
T 2ff4_A 126 AAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFEHPYRE 205 (388)
T ss_dssp HHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH
T ss_pred HhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH
Confidence 34566666667777665543321 11000 011223455678888999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhh
Q 045024 600 EVLQVYAFSLWQLGKYDLALSMARNLAS 627 (1173)
Q Consensus 600 ~~~~~la~a~~~~g~~~eA~~~~~~aL~ 627 (1173)
..+..+-.++...|+..+|++.|+++-.
T Consensus 206 ~~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 206 PLWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999999999999999999999998755
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=90.93 E-value=2.4 Score=48.34 Aligned_cols=61 Identities=10% Similarity=-0.097 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 045024 162 LWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALK 222 (1173)
Q Consensus 162 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~ 222 (1173)
+...++..+...|++++|+..+.+++..+|-+-.++..+..++...|+..+|+..|+++.+
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4456677788889999999999998999998888888888889999999999888887654
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=90.49 E-value=2.2 Score=45.16 Aligned_cols=55 Identities=18% Similarity=0.159 Sum_probs=29.2
Q ss_pred HCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 045024 104 HGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPT 158 (1173)
Q Consensus 104 ~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~ 158 (1173)
+.|+.++|+......++.+|.+......+..++.-.|+|+.|...++.+.+++|.
T Consensus 9 ~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~ 63 (273)
T 1zbp_A 9 SEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPE 63 (273)
T ss_dssp TTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGG
T ss_pred hCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCch
Confidence 4445555555555555555555555555555555555555555555555555554
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=90.22 E-value=3.6 Score=51.87 Aligned_cols=99 Identities=8% Similarity=-0.072 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHH
Q 045024 126 FWAFRRLGYLQLHHKKWSEAVQSLQHAIRG----YPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELD-DTSIFPLLES 200 (1173)
Q Consensus 126 ~~a~~~la~~~~~~g~~~~A~~~l~~al~~----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~l 200 (1173)
...+..+...|.+.|+.++|..+|.++.+. -.-+...|..+...|.+.|+.++|.+.|++..+.. ..+..++..+
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 345777777888888888888888665432 23357777888888888888888888888876653 2356677777
Q ss_pred HHHHHHcCCh-HHHHHHHHHHHhhc
Q 045024 201 GNIFLMLGNF-RKGVEQFQLALKIS 224 (1173)
Q Consensus 201 a~~~~~~g~~-~~A~~~~~~al~~~ 224 (1173)
...+.+.|+. ++|.+.|+++.+..
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG 231 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEG 231 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHT
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcC
Confidence 7777777774 67778888777643
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=89.79 E-value=7 Score=38.65 Aligned_cols=100 Identities=15% Similarity=-0.012 Sum_probs=53.8
Q ss_pred HHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 045024 103 EHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKS 182 (1173)
Q Consensus 103 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 182 (1173)
...|+++.|.+..+.. ++...|..+|......|+++-|+.+|+++ ++. ..+..+|...|+.+.-.+.
T Consensus 16 L~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~-----~D~---~~L~~Ly~~tg~~e~L~kl 82 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQ-----HSF---DKLSFLYLVTGDVNKLSKM 82 (177)
T ss_dssp HHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHT-----TCH---HHHHHHHHHHTCHHHHHHH
T ss_pred HhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHh-----CCH---HHHHHHHHHhCCHHHHHHH
Confidence 4556666666665543 34556666777777777777776666664 222 2233444555655554444
Q ss_pred HHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHH
Q 045024 183 YGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLA 220 (1173)
Q Consensus 183 ~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~a 220 (1173)
-+.+..... . .....++..+|+++++++.|.+.
T Consensus 83 a~iA~~~g~--~---n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 83 QNIAQTRED--F---GSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp HHHHHHTTC--H---HHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHCcc--H---HHHHHHHHHcCCHHHHHHHHHHC
Confidence 443333221 1 12234455667777777766553
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=88.50 E-value=3.3 Score=43.81 Aligned_cols=60 Identities=20% Similarity=0.160 Sum_probs=55.7
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Q 045024 135 LQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSI 194 (1173)
Q Consensus 135 ~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 194 (1173)
..++.|+.++|+......++.+|.|......+..++.-.|+++.|.+.++.+.+++|+..
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~ 65 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYL 65 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGH
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhh
Confidence 356789999999999999999999999999999999999999999999999999998753
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=87.96 E-value=40 Score=38.84 Aligned_cols=185 Identities=9% Similarity=-0.044 Sum_probs=121.2
Q ss_pred ccCcHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH----HH
Q 045024 35 NSESKEKAAEHFVIAAKL------NPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELL----EH 104 (1173)
Q Consensus 35 ~~~~~~~A~~~~~~al~~------~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~----~~ 104 (1173)
.++ +++|++.+....+. .+....+...+..++.. .|+++...+.+.-..........+...+.... ..
T Consensus 29 ~~~-~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~-~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~ 106 (445)
T 4b4t_P 29 QND-CNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLAS-RNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKS 106 (445)
T ss_dssp HHH-HHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHH-HSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHH
T ss_pred cCC-HHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhc
Confidence 344 88888877544432 23456788888999999 99999888877655544444333322222211 11
Q ss_pred CCCHHHHHHHHHHHHhh----CCC-------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CC-C----CHHHHHHHH
Q 045024 105 GGKESLEVVVCREASDK----SPR-------AFWAFRRLGYLQLHHKKWSEAVQSLQHAIRG-YP-T----SPHLWEALG 167 (1173)
Q Consensus 105 ~g~~~~A~~~~~~al~~----~p~-------~~~a~~~la~~~~~~g~~~~A~~~l~~al~~-~p-~----~~~~~~~la 167 (1173)
....+... ....+.. ..+ .......++.++...|++.+|...+.....- .. . -.+.+....
T Consensus 107 ~~~~d~~~--~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~ 184 (445)
T 4b4t_P 107 SKSLDLNT--RISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQM 184 (445)
T ss_dssp HCTTHHHH--HHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHH
T ss_pred CCchhHHH--HHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 22222111 1111111 111 2345678999999999999999999987642 11 1 156777888
Q ss_pred HHHHHcCCHHHHHHHHHHHHH---hCCCC----hHHHHHHHHHHHHcCChHHHHHHHHHHHhh
Q 045024 168 LAYHRLGMFSAAIKSYGRAIE---LDDTS----IFPLLESGNIFLMLGNFRKGVEQFQLALKI 223 (1173)
Q Consensus 168 ~~~~~~g~~~~A~~~~~~al~---~~p~~----~~a~~~la~~~~~~g~~~~A~~~~~~al~~ 223 (1173)
+++...+++..|...++++.. ..+.. ...+...|.++...++|.+|-.+|..++..
T Consensus 185 rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~ 247 (445)
T 4b4t_P 185 ELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQT 247 (445)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 999999999999999998743 22333 244567889999999999999999988764
|
| >4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=85.97 E-value=3.7 Score=47.43 Aligned_cols=105 Identities=12% Similarity=0.025 Sum_probs=82.4
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCC
Q 045024 521 YPESHNLYGLVCEARSDYQAAVVSYRLARYAISSSSGTVPNSHFQDISINLARSLSRAGNALDAVRECESLERQ--GMLD 598 (1173)
Q Consensus 521 ~~~a~~~lg~i~~~~g~~~~A~~~~~kAl~l~~~~pe~~~~~~~~~~~~~La~~~~~~g~~~eAi~~~~~~~~~--~p~~ 598 (1173)
...++..+|..|...|++++|.+.|.++...... ..+....+....+++...+++..+...++++... ...+
T Consensus 130 ~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~------~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d 203 (429)
T 4b4t_R 130 QAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAIS------TGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGD 203 (429)
T ss_dssp CSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTC------CCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC------hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCC
Confidence 3457789999999999999999999998654322 3456678999999999999999999999998654 1222
Q ss_pred HH----HHHHHHHHHHHcCChHHHHHHHHHHhhhccc
Q 045024 599 AE----VLQVYAFSLWQLGKYDLALSMARNLASSVSA 631 (1173)
Q Consensus 599 ~~----~~~~la~a~~~~g~~~eA~~~~~~aL~~~p~ 631 (1173)
+. .....|.++...++|.+|...|-.++.....
T Consensus 204 ~~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t~~~ 240 (429)
T 4b4t_R 204 WERRNRYKTYYGIHCLAVRNFKEAAKLLVDSLATFTS 240 (429)
T ss_dssp THHHHHHHHHHHHGGGGTSCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHHHHhChHHHHHHHHHHHhccCCc
Confidence 22 3355788888999999999999988775543
|
| >1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=85.11 E-value=3.6 Score=48.27 Aligned_cols=80 Identities=14% Similarity=0.027 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 045024 94 SGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRL 173 (1173)
Q Consensus 94 a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~ 173 (1173)
.+..+|.+......+..|..+|.+|..+.|++...++.+|.+....|+.-+|+-+|.+++......+.+..++...+.+.
T Consensus 154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~~~ 233 (497)
T 1ya0_A 154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKA 233 (497)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Confidence 46788888888888899999999999999999999999999998889999999888888877666788888888777653
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=83.84 E-value=48 Score=43.29 Aligned_cols=140 Identities=11% Similarity=-0.027 Sum_probs=90.6
Q ss_pred HHHHHHccCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhC--------------------
Q 045024 29 GLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLS-------------------- 88 (1173)
Q Consensus 29 g~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~-------------------- 88 (1173)
...+...+. ++-+.+ .+...|.++...+.+|.++.. .|++++|..+|+++-..-
T Consensus 819 ~~~l~~~~~-~~~~~~----l~~~~~~~~~~~yl~g~~~L~-~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~ 892 (1139)
T 4fhn_B 819 VEKLFLFKQ-YNACMQ----LIGWLNSDPIAVYLKALIYLK-SKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKY 892 (1139)
T ss_dssp HHHHHHHSC-TTHHHH----HHHHSCCCHHHHHHHHHHHHH-TTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTT
T ss_pred HHHHHHhhh-HHHHHH----HhhhccCCcHHHHHHHHHHHh-cCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccc
Confidence 333444444 444433 345677888888999999999 999999999998873210
Q ss_pred ---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCC-cH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 045024 89 ---PDDSVSGEALCELLEHGGKESLEVVVCREASDKSPR-AF----WAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSP 160 (1173)
Q Consensus 89 ---p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~-~~----~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~ 160 (1173)
...+..+..+..++.+.|.++.+++..+.+++..+. +. ..|..+-..+...|+|++|...+...-.. ....
T Consensus 893 ~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~-~~r~ 971 (1139)
T 4fhn_B 893 HHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTT-PLKK 971 (1139)
T ss_dssp TSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHS-SSCH
T ss_pred cccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCH-HHHH
Confidence 011234566777888888899999888888876543 22 25666777788889999888777554221 2234
Q ss_pred HHHHHHHHHHHHcCC
Q 045024 161 HLWEALGLAYHRLGM 175 (1173)
Q Consensus 161 ~~~~~la~~~~~~g~ 175 (1173)
..+..+.......|.
T Consensus 972 ~cLr~LV~~lce~~~ 986 (1139)
T 4fhn_B 972 SCLLDFVNQLTKQGK 986 (1139)
T ss_dssp HHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHhCCC
Confidence 444444444444444
|
| >1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=83.11 E-value=5.6 Score=46.60 Aligned_cols=78 Identities=15% Similarity=0.027 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCHHHHHHHHHHHH
Q 045024 162 LWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLASGLL 239 (1173)
Q Consensus 162 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~ 239 (1173)
.+..+|.+......++.|..+|.+|..+.|++...+..+|.+....|+.-+|+-+|-+++......+.+..++...+.
T Consensus 154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~ 231 (497)
T 1ya0_A 154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALS 231 (497)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Confidence 556788888888888999999999999999999999999999999999999999988888876667777666655443
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=82.35 E-value=1.1e+02 Score=38.37 Aligned_cols=210 Identities=13% Similarity=0.034 Sum_probs=102.0
Q ss_pred HHHHHHHhhc--ccHHHHHHHHHHHhcCCCc--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhHHHHhHHHHHH
Q 045024 389 FWVTLGCLSN--YNGLKQHALIRGLQLDVSL--ADAWAHIGKLYGEVGEKKLARQAFDSARSIDPSLALPWAGMSADVQA 464 (1173)
Q Consensus 389 ~~~~Lg~~~~--~~~~a~~a~~kal~l~p~~--~~a~~~Lg~~y~~~g~~e~A~~~f~~al~~~P~~~~a~~~l~a~~~~ 464 (1173)
+-..||.++. ....+.+.+...+..+... ..+-+.+|.++...|+-+.....+..+.+...+.. ....-++..+.
T Consensus 457 AaLGLGla~~GS~~eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~v-rR~aalgLGll 535 (963)
T 4ady_A 457 ASLGIGLAAMGSANIEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNI-TRGLAVGLALI 535 (963)
T ss_dssp HHHHHHHHSTTCCCHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHH-HHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHH-HHHHHHHHHhh
Confidence 4456777765 3345566677666543321 13556789999999998777777776665332221 11111233444
Q ss_pred hcCCHHHHHHHHHHHHhcCCchHHHHHH--HHHHHHhCCCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHH
Q 045024 465 SESLVDDAFESCLRAVQILPLAEFQIGL--AKLAKLSGHLSSSQVFGAIQQAIQRGPH-YPESHNLYGLVCEARSDYQAA 541 (1173)
Q Consensus 465 ~~g~~~eA~~~~~~al~~~p~~~~~~~l--a~l~~~~g~~~~~~A~~~l~~al~~~P~-~~~a~~~lg~i~~~~g~~~~A 541 (1173)
..|+.+.+-.+.+.... .+++-..++- +......|... ..+++.+-.....+++ +..-...+|......|+.+.+
T Consensus 536 ~~g~~e~~~~li~~L~~-~~dp~vRygaa~alglAyaGTGn-~~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~e~v 613 (963)
T 4ady_A 536 NYGRQELADDLITKMLA-SDESLLRYGGAFTIALAYAGTGN-NSAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDYTTV 613 (963)
T ss_dssp TTTCGGGGHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTSCC-HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSCSSH
T ss_pred hCCChHHHHHHHHHHHh-CCCHHHHHHHHHHHHHHhcCCCC-HHHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCHHHH
Confidence 67887766666555443 3444333332 22222333332 4566633333333444 333223333333344555434
Q ss_pred HHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHHH--hcCC-HHHHHHHHHHHHHcCCCCH---HHHHHHHHHHHHcC
Q 045024 542 VVSYRLARYAISSSSGTVPNSHFQDISINLARSLS--RAGN-ALDAVRECESLERQGMLDA---EVLQVYAFSLWQLG 613 (1173)
Q Consensus 542 ~~~~~kAl~l~~~~pe~~~~~~~~~~~~~La~~~~--~~g~-~~eAi~~~~~~~~~~p~~~---~~~~~la~a~~~~g 613 (1173)
...++. +.... + ..+.+..+.++. ..|+ ..+|+..+.++. .++++. .+.+.+|.+.....
T Consensus 614 ~rlv~~----L~~~~-d------~~VR~gAalALGli~aGn~~~~aid~L~~L~-~D~d~~Vrq~Ai~ALG~Ig~gtn 679 (963)
T 4ady_A 614 PRIVQL----LSKSH-N------AHVRCGTAFALGIACAGKGLQSAIDVLDPLT-KDPVDFVRQAAMIALSMILIQQT 679 (963)
T ss_dssp HHHTTT----GGGCS-C------HHHHHHHHHHHHHHTSSSCCHHHHHHHHHHH-TCSSHHHHHHHHHHHHHHSTTCC
T ss_pred HHHHHH----HHhcC-C------HHHHHHHHHHHHHhccCCCcHHHHHHHHHHc-cCCCHHHHHHHHHHHHHHhcCCc
Confidence 333331 22111 1 123333322222 2333 378888888885 444442 24455555554443
|
| >4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=81.68 E-value=12 Score=43.69 Aligned_cols=121 Identities=16% Similarity=0.099 Sum_probs=53.2
Q ss_pred cCcHHHHHHHHHHHH-----------HhCCCCHHHHHHHHHHHHHccCCHHHHH----------HHHHHHHh-----hCC
Q 045024 36 SESKEKAAEHFVIAA-----------KLNPQNAVAFRYLGHYYTRFSIDTQRAI----------KCYQRAVS-----LSP 89 (1173)
Q Consensus 36 ~~~~~~A~~~~~~al-----------~~~p~~~~a~~~lg~~~~~~~g~~~eA~----------~~~~~al~-----~~p 89 (1173)
.+++++|..+-...+ .+|+-.+.+|++.+.++.. .|+..... ..+-.+++ .++
T Consensus 149 ~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~-~~~~~~~~~~~~~~~~ir~~Ll~~~rta~lr~D~ 227 (523)
T 4b4t_S 149 SKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHET-LARSSEEINSDNQNIILRSTMMKFLKIASLKHDN 227 (523)
T ss_dssp -------------------------------------------------------CHHHHHHHHTHHHHHHHHCCSCSSS
T ss_pred cccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHH-hcccccccccccchhhHHHHHHHHHHHHhcccCc
Confidence 334888877665443 1234456778888888877 77665432 12222222 222
Q ss_pred CC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCC----c---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 045024 90 DD-SVSGEALCELLEHGGKESLEVVVCREASDKSPR----A---FWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTS 159 (1173)
Q Consensus 90 ~~-~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~----~---~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~ 159 (1173)
.. ...+..+-+.|...+.++.|.....++. .|. + ...++.+|.++..+++|.+|.+.+..+++..|.+
T Consensus 228 ~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~ 303 (523)
T 4b4t_S 228 ETKAMLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHN 303 (523)
T ss_dssp CHHHHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCS
T ss_pred chhHHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc
Confidence 22 2337777888888889999998888874 332 1 4456778888888999999988888888877643
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=80.06 E-value=28 Score=45.56 Aligned_cols=121 Identities=13% Similarity=0.017 Sum_probs=77.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---------------------
Q 045024 132 LGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELD--------------------- 190 (1173)
Q Consensus 132 la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--------------------- 190 (1173)
+...+...+.++-+.. .+...|.++...+.+|.++...|++++|..+|+++-..-
T Consensus 818 l~~~l~~~~~~~~~~~----l~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~ 893 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQ----LIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYH 893 (1139)
T ss_dssp HHHHHHHHSCTTHHHH----HHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTT
T ss_pred HHHHHHHhhhHHHHHH----HhhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccccccc
Confidence 3444555666655543 345567788888899999999999999999998763210
Q ss_pred --CCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHH
Q 045024 191 --DTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLASGLLGLAKQCINLGAFRWGASLL 258 (1173)
Q Consensus 191 --p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~l~~~~~a~g~~~~A~~~l 258 (1173)
...+..+..+..++.+.|.++.+++.-+.+++..+.+.... ....+...=+.....++|++|...+
T Consensus 894 ~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~--~~~l~~~iFk~~L~l~~ye~Ay~aL 961 (1139)
T 4fhn_B 894 HQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDL--SIAITHETLKTACAAGKFDAAHVAL 961 (1139)
T ss_dssp SCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHH--HHHHHHHHHHHHHHHCCSGGGGHHH
T ss_pred ccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhh--HHHHHHHHHHHHHhhCCHHHHHHHH
Confidence 01234456777888889999999999999998764433211 1122333334445556666655433
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 1173 | ||||
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 2e-22 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 1e-20 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 1e-17 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 2e-15 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 1e-14 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 2e-08 | |
| d1ya0a1 | 497 | a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T | 3e-14 | |
| d1ya0a1 | 497 | a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T | 3e-10 | |
| d1ya0a1 | 497 | a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T | 3e-04 | |
| d1ya0a1 | 497 | a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T | 5e-04 | |
| d1ya0a1 | 497 | a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T | 0.001 | |
| d2c2la1 | 201 | a.118.8.1 (A:24-224) STIP1 homology and U box-cont | 5e-10 | |
| d2c2la1 | 201 | a.118.8.1 (A:24-224) STIP1 homology and U box-cont | 1e-06 | |
| d2h6fa1 | 315 | a.118.6.1 (A:55-369) Protein farnesyltransferase a | 2e-09 | |
| d2h6fa1 | 315 | a.118.6.1 (A:55-369) Protein farnesyltransferase a | 3e-08 | |
| d1zbpa1 | 264 | e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V | 8e-09 | |
| d1zbpa1 | 264 | e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V | 1e-08 | |
| d1zbpa1 | 264 | e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V | 2e-06 | |
| d1zbpa1 | 264 | e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V | 2e-05 | |
| d1dcea1 | 334 | a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltr | 1e-08 | |
| d1dcea1 | 334 | a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltr | 3e-07 | |
| d1dcea1 | 334 | a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltr | 7e-05 | |
| d1xnfa_ | 259 | a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli | 1e-08 | |
| d1fcha_ | 323 | a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting | 9e-08 | |
| d1fcha_ | 323 | a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting | 1e-06 | |
| d1fcha_ | 323 | a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting | 5e-04 | |
| d1fcha_ | 323 | a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting | 0.001 | |
| d1fcha_ | 323 | a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting | 0.004 | |
| d1hh8a_ | 192 | a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF- | 1e-05 | |
| d1hh8a_ | 192 | a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF- | 0.001 | |
| d1hh8a_ | 192 | a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF- | 0.002 | |
| d1a17a_ | 159 | a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo | 1e-04 | |
| d1nzna_ | 122 | a.118.8.1 (A:) Mitochondria fission protein Fis1 { | 4e-04 | |
| d1hz4a_ | 366 | a.118.8.2 (A:) Transcription factor MalT domain II | 8e-04 | |
| d1qqea_ | 290 | a.118.8.1 (A:) Vesicular transport protein sec17 { | 0.001 | |
| d1elra_ | 128 | a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9 | 0.003 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 99.0 bits (245), Expect = 2e-22
Identities = 49/227 (21%), Positives = 86/227 (37%), Gaps = 2/227 (0%)
Query: 15 LEANPDDPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDT 74
+E P+ +LG + A HF A L+P A+ LG+ + +
Sbjct: 162 IETQPNFAVAWSNLGCV-FNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVL-KEARIF 219
Query: 75 QRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGY 134
RA+ Y RA+SLSP+ +V L + G L + R A + P A+ L
Sbjct: 220 DRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLAN 279
Query: 135 LQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSI 194
+EA A+R PT L G A++ Y +A+E+
Sbjct: 280 ALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFA 339
Query: 195 FPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLASGLLGL 241
++ G ++ + ++ A++IS A+ + + L +
Sbjct: 340 AAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEM 386
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 93.2 bits (230), Expect = 1e-20
Identities = 67/419 (15%), Positives = 138/419 (32%), Gaps = 39/419 (9%)
Query: 166 LGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISS 225
L ++ G F AA + + + + LL +I + LA+K +
Sbjct: 5 LAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNP 64
Query: 226 ENVSAHYGLASGLLGLAKQCINLGAFRWGASLLEDACKVAEANTRLAGNMSCIWKLHGDI 285
A+ L + + + +R L D +
Sbjct: 65 LLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAY 124
Query: 286 QLTYAKCFPWAEERQSLEFDVETFSASIVSWKTTCLMAAISSKSSYQRALYLAPWQANIY 345
R + L +K+ Y +A+ P A +
Sbjct: 125 VSALQYNPDLYCVRS------------DLGNLLKALGRLEEAKACYLKAIETQPNFAVAW 172
Query: 346 TDIAITSDLIYSLNEAYGHYQSAWHVSEKMALGALLLEGDNCQFWVTLGCLSNYNGLKQH 405
+++ A G A H EK A+ L+ + ++ LG + +
Sbjct: 173 SNLGCV-------FNAQGEIWLAIHHFEK----AVTLDPNFLDAYINLGNVLKEARIFDR 221
Query: 406 AL---IRGLQLDVSLADAWAHIGKLYGEVGEKKLARQAFDSARSIDPSLALPWAGMSADV 462
A+ +R L L + A ++ +Y E G LA + A + P + + A+
Sbjct: 222 AVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNL-ANA 280
Query: 463 QASESLVDDAFESCLRAVQILP-LAEFQIGLAKLAKLSGHLSSSQVFGAIQQAIQRGPHY 521
+ V +A + A+++ P A+ LA + + G++ + ++A++ P +
Sbjct: 281 LKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNI--EEAVRLYRKALEVFPEF 338
Query: 522 PESHNLYGLVCEARSDYQAAVVSYRLARYAISSSSGTVPNSHFQDISINLARSLSRAGN 580
+H+ V + + Q A++ Y+ A I + F D N+ +L +
Sbjct: 339 AAAHSNLASVLQQQGKLQEALMHYKEA-IRI--------SPTFADAYSNMGNTLKEMQD 388
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 84.3 bits (207), Expect = 1e-17
Identities = 53/232 (22%), Positives = 82/232 (35%), Gaps = 8/232 (3%)
Query: 53 NPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEV 112
P AVA+ LG + AI +++AV+L P+ + L +L+ V
Sbjct: 165 QPNFAVAWSNLGCVFNAQGEI-WLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAV 223
Query: 113 VVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHR 172
A SP L + A+ + + AI P P + L A
Sbjct: 224 AAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKE 283
Query: 173 LGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHY 232
G + A Y A+ L T L NI GN + V ++ AL++ E +AH
Sbjct: 284 KGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHS 343
Query: 233 GLASGLLGLAKQCINLGAFRWGASLLEDACKVAEANTRLAGNMSCIWKLHGD 284
LAS L G + ++A +++ NM K D
Sbjct: 344 NLASVLQ-------QQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 77.4 bits (189), Expect = 2e-15
Identities = 60/358 (16%), Positives = 106/358 (29%), Gaps = 14/358 (3%)
Query: 11 LEDSLEANPDDPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRF 70
PD+ + L L + +++A +A K NP A A+ LG+ Y
Sbjct: 22 CMQLWRQEPDNTGVLLLLSS-IHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKER 80
Query: 71 SIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFR 130
+ L+ G E
Sbjct: 81 GQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSD 140
Query: 131 RLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELD 190
L+ + L+ I P W LG ++ G AI + +A+ LD
Sbjct: 141 LGNLLKALGRLEEAKACYLKA-IETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD 199
Query: 191 DTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLASGLLGLAKQCINLGA 250
+ + GN+ F + V + AL +S + H LA G
Sbjct: 200 PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYY-------EQGL 252
Query: 251 FRWGASLLEDACKVAEANTRLAGNMSCIWKLHGDIQLTYAKCFPWAEERQSLEFDVETFS 310
A ++ N++ K G + A+ R +
Sbjct: 253 IDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAE--AEDCYNTALRLCPTHADSLNN 310
Query: 311 ASIVSWKTTCLMAAISSKSSYQRALYLAPWQANIYTDIAITSDLIYSLNEAYGHYQSA 368
+ + + + A+ Y++AL + P A ++++A L EA HY+ A
Sbjct: 311 LANIKREQGNIEEAV---RLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEA 365
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 74.7 bits (182), Expect = 1e-14
Identities = 70/436 (16%), Positives = 135/436 (30%), Gaps = 62/436 (14%)
Query: 26 LDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAV 85
++L ++ + E A H + + P N L + + R+ A+
Sbjct: 3 MELAHREYQAGDF-EAAERHCMQLWRQEPDNTGVLLLLSSIHFQCR-RLDRSAHFSTLAI 60
Query: 86 SLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEA 145
+P + + L + + G+ + R A P + L + A
Sbjct: 61 KQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGA 120
Query: 146 VQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFL 205
VQ+ A++ P + LG LG A Y +AIE G +F
Sbjct: 121 VQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFN 180
Query: 206 MLGNFRKGVEQFQLALKISSENVSAHYGLASGLLGLAKQCINLGAFRWGASLLEDACKVA 265
G + F+ A+ + + A+ NLG A + + A
Sbjct: 181 AQGEIWLAIHHFEKAVTLDPNFLDAYI--------------NLGNVLKEARIFDRAVAAY 226
Query: 266 EANTRLAGNMSCIWKLHGDIQLTYAKCFPWAEERQSLEFDVETFSASIVSWKTTCLMAAI 325
L+ N + + + + AI
Sbjct: 227 LRALSLSPNHAVVHGNLACVYYEQGL-----------------------------IDLAI 257
Query: 326 SSKSSYQRALYLAPWQANIYTDIAITSDLIYSLNEAYGHYQSAWHVSEKMALGALLLEGD 385
+Y+RA+ L P + Y ++A S+ EA Y +A +
Sbjct: 258 ---DTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTH---------- 304
Query: 386 NCQFWVTLGCLSNYNGLKQHALI---RGLQLDVSLADAWAHIGKLYGEVGEKKLARQAFD 442
L + G + A+ + L++ A A +++ + + G+ + A +
Sbjct: 305 -ADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYK 363
Query: 443 SARSIDPSLALPWAGM 458
A I P+ A ++ M
Sbjct: 364 EAIRISPTFADAYSNM 379
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 55.4 bits (132), Expect = 2e-08
Identities = 62/388 (15%), Positives = 117/388 (30%), Gaps = 26/388 (6%)
Query: 237 GLLGLAKQCINLGAFRWGASLLEDACKVAEANTRLAGNMSCIWKLHGDIQLTYAKCFPWA 296
G + LA + G F + NT + +S I + ++
Sbjct: 1 GPMELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRR----LDRSAHFS 56
Query: 297 EERQSLEFDVETFSASIVSWKTTCLMAAISSKSSYQRALYLAPWQANIYTDIAITSDLIY 356
+++ + A + + + + A I +
Sbjct: 57 T--LAIKQNPLLAEA-------YSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINL 107
Query: 357 SLNEAYGHYQSAWHVSEKMALGALLLEGDNCQFWVTLGCLSNYNGLKQHALIRGLQLDVS 416
+ + AL L + ++ ++ +
Sbjct: 108 AAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPN 167
Query: 417 LADAWAHIGKLYGEVGEKKLARQAFDSARSIDPSLALPWAGMSADVQASESLVDDAFESC 476
A AW+++G ++ GE LA F+ A ++DP+ + + +V + D A +
Sbjct: 168 FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINL-GNVLKEARIFDRAVAAY 226
Query: 477 LRAVQI-LPLAEFQIGLAKLAKLSGHLSSSQVFGAIQQAIQRGPHYPESHNLYGLVCEAR 535
LRA+ + A LA + G + + ++AI+ PH+P+++ + +
Sbjct: 227 LRALSLSPNHAVVHGNLACVYYEQGLIDLA--IDTYRRAIELQPHFPDAYCNLANALKEK 284
Query: 536 SDYQAAVVSYRLARYAISSSSGTVPNSHFQDISINLARSLSRAGNALDAVRECESLERQG 595
A Y A D NLA GN +AVR
Sbjct: 285 GSVAEAEDCYNTALR---------LCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVF 335
Query: 596 MLDAEVLQVYAFSLWQLGKYDLALSMAR 623
A A L Q GK AL +
Sbjct: 336 PEFAAAHSNLASVLQQQGKLQEALMHYK 363
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 74.4 bits (182), Expect = 3e-14
Identities = 27/196 (13%), Positives = 64/196 (32%), Gaps = 7/196 (3%)
Query: 41 KAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCE 100
++A++ A L + +T Q YQ+ + + ++ + +
Sbjct: 4 QSAQYLRQAEVLKADMTDSKLGPAEVWT----SRQALQDLYQKMLVTDLEYALDKKVEQD 59
Query: 101 LLEHGGKESLEVVVCREASDKSPRAFWAFRRL-GYLQLHHKKWSEAVQSLQHAIRGYPTS 159
L H K + + + + +P L +L+ +++ +Q L
Sbjct: 60 LWNHAFKNQITTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPC 119
Query: 160 PHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQL 219
LG+ ++ SA +K + L+ G+I + ++
Sbjct: 120 RVKSSQLGIISNKQTHTSAIVKPQSSSCSYICQHC--LVHLGDIARYRNQTSQAESYYRH 177
Query: 220 ALKISSENVSAHYGLA 235
A ++ N + LA
Sbjct: 178 AAQLVPSNGQPYNQLA 193
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 61.7 bits (149), Expect = 3e-10
Identities = 24/179 (13%), Positives = 53/179 (29%), Gaps = 3/179 (1%)
Query: 12 EDSLEANPDDPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFS 71
+ L + + LW ++ + + NP + L + S
Sbjct: 41 QKMLVTDLEYALDKKVEQD-LWNHAFKNQITTLQGQAKNRANPNRSEVQANLSLFLEAAS 99
Query: 72 IDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRR 131
+ ++ ++ V L + S V + +
Sbjct: 100 GFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYICQ--HCLVH 157
Query: 132 LGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELD 190
LG + + + S+A +HA + P++ + L + G I Y R+I +
Sbjct: 158 LGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVK 216
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.5 bits (99), Expect = 3e-04
Identities = 19/137 (13%), Positives = 39/137 (28%), Gaps = 6/137 (4%)
Query: 17 ANPDDPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQR 76
+ + LG + +A ++ AA+L P N + L + D
Sbjct: 147 CSYICQHCLVHLGD-IARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKG-DHLT 204
Query: 77 AIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQ 136
I Y R++++ + L + L + E + AF +
Sbjct: 205 TIFYYCRSIAVKFPFPAASTNLQKALSKALESRDE----VKTKWGVSDFIKAFIKFHGHV 260
Query: 137 LHHKKWSEAVQSLQHAI 153
K + +
Sbjct: 261 YLSKSLEKLSPLREKLE 277
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.7 bits (97), Expect = 5e-04
Identities = 35/275 (12%), Positives = 79/275 (28%), Gaps = 31/275 (11%)
Query: 324 AISSKSSYQRALYLAPWQANIYTDIAITSDLIYSLNEAYGHYQSAWHVSEKMALGALLLE 383
++ S ++A L + A +L + Y +K L+ +
Sbjct: 2 SLQSAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDLY----------QK----MLVTD 47
Query: 384 GDNCQFWVTLGCLSN---YN-GLKQHALIRGLQLDVSLADAWAHIGKLYGEVGEKKLARQ 439
+ L N N + L G Q
Sbjct: 48 LEYALDKKVEQDLWNHAFKNQITTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQ 107
Query: 440 AFDSARSIDPSLALPWAGMSADVQASESLVDDAFESCLRAVQILPLAEFQIGLAKLAKLS 499
+ ++D + + + + ++ + + + + L +A+
Sbjct: 108 ELCTVFNVDLPCRVKSSQL-GIISNKQTHTSAIVKPQSSSCSYIC-QHCLVHLGDIARYR 165
Query: 500 GHLSSSQVFGAIQQAIQRGPHYPESHNLYGLVCEARSDYQAAVVSYRLARYAISSSSGTV 559
SQ + A Q P + +N ++ ++ D+ + Y +I+
Sbjct: 166 NQT--SQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYY---CRSIAV----- 215
Query: 560 PNSHFQDISINLARSLSRAGNALDAVRECESLERQ 594
F S NL ++LS+A + D V+ +
Sbjct: 216 -KFPFPAASTNLQKALSKALESRDEVKTKWGVSDF 249
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.5 bits (94), Expect = 0.001
Identities = 22/153 (14%), Positives = 42/153 (27%), Gaps = 7/153 (4%)
Query: 7 LLLQLEDSLEANPDDPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHY 66
LL +L + LG+ + + + Q+ + +LG
Sbjct: 105 LLQELCTVFNVDLPCRVKSSQLGI-ISNKQTHTSAIVKPQSSSCSYICQHCLV--HLGDI 161
Query: 67 YTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAF 126
R+ T +A Y+ A L P + L L G + +
Sbjct: 162 A-RYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFP 220
Query: 127 WAFRRLGYL---QLHHKKWSEAVQSLQHAIRGY 156
A L L + + + I+ +
Sbjct: 221 AASTNLQKALSKALESRDEVKTKWGVSDFIKAF 253
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 58.4 bits (140), Expect = 5e-10
Identities = 27/126 (21%), Positives = 45/126 (35%), Gaps = 1/126 (0%)
Query: 122 SPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIK 181
SP A + G +K+ EA AI P + L Y ++ A+
Sbjct: 1 SPSAQ-ELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALA 59
Query: 182 SYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLASGLLGL 241
RA+ELD S+ G L + ++ + + Q A ++ E L +
Sbjct: 60 DCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRI 119
Query: 242 AKQCIN 247
AK+
Sbjct: 120 AKKKRW 125
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 48.4 bits (114), Expect = 1e-06
Identities = 30/155 (19%), Positives = 54/155 (34%), Gaps = 5/155 (3%)
Query: 73 DTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRL 132
A CY RA++ +P +V + + CR A + ++ A L
Sbjct: 19 KYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFL 78
Query: 133 GYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDT 192
G QL + + EA+ +LQ A + + R+ A K +IE
Sbjct: 79 GQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRI-----AKKKRWNSIEERRI 133
Query: 193 SIFPLLESGNIFLMLGNFRKGVEQFQLALKISSEN 227
L S L+ + +E+ Q + ++
Sbjct: 134 HQESELHSYLTRLIAAERERELEECQRNHEGHEDD 168
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 315 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Score = 58.0 bits (139), Expect = 2e-09
Identities = 26/207 (12%), Positives = 70/207 (33%), Gaps = 8/207 (3%)
Query: 39 KEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEAL 98
+ + V+ + + + Y R ++RA K + A+ L+ +
Sbjct: 25 PQNDGPNPVVQIIYSDKFRDVYDYFRAVLQR-DERSERAFKLTRDAIELNAANYTVWHFR 83
Query: 99 CELLEHGGKESLEVVVCREAS-DKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYP 157
LL+ K+ E + A ++ P+ + + L + S+ ++ + +
Sbjct: 84 RVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDA 143
Query: 158 TSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFP------LLESGNIFLMLGNFR 211
+ H W+ ++ ++ + ++ D + ++ + +
Sbjct: 144 KNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLE 203
Query: 212 KGVEQFQLALKISSENVSAHYGLASGL 238
+ V+ +K+ N SA L L
Sbjct: 204 REVQYTLEMIKLVPHNESAWNYLKGIL 230
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 315 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Score = 54.2 bits (129), Expect = 3e-08
Identities = 26/225 (11%), Positives = 64/225 (28%), Gaps = 8/225 (3%)
Query: 14 SLEANPDDPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSID 73
+ + ++ L + S E+A + A +LN N + + D
Sbjct: 35 QIIYSDKFRDVYDYFRAVLQRDERS-ERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKD 93
Query: 74 TQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLG 133
+ + P + L+E S E+ + ++ + + A++
Sbjct: 94 LHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQ 153
Query: 134 YLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLG------MFSAAIKSYGRAI 187
++ K W +Q + ++ + +W + ++ I
Sbjct: 154 WVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMI 213
Query: 188 ELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHY 232
+L + I G K L + + S +
Sbjct: 214 KLVPHNESAWNYLKGILQDRG-LSKYPNLLNQLLDLQPSHSSPYL 257
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Score = 55.8 bits (134), Expect = 8e-09
Identities = 15/132 (11%), Positives = 37/132 (28%), Gaps = 2/132 (1%)
Query: 40 EKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALC 99
++A E + A K +P++A D +RA + +++ L P+ L
Sbjct: 13 QQALELLIEAIKASPKDASLRSSFIELLCIDG-DFERADEQLMQSIKLFPEYLPGASQLR 71
Query: 100 ELLE-HGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPT 158
L++ ++ L + + + + +
Sbjct: 72 HLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQE 131
Query: 159 SPHLWEALGLAY 170
L +
Sbjct: 132 KGFLANDTSFSD 143
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Score = 55.4 bits (133), Expect = 1e-08
Identities = 17/122 (13%), Positives = 33/122 (27%), Gaps = 1/122 (0%)
Query: 73 DTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRL 132
Q+A++ A+ SP D+ + ELL G ++ P +L
Sbjct: 11 QLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQL 70
Query: 133 GYLQLHHKKWSEAVQSL-QHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDD 191
+L + + Q + G + + + EL
Sbjct: 71 RHLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQ 130
Query: 192 TS 193
Sbjct: 131 EK 132
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Score = 48.5 bits (115), Expect = 2e-06
Identities = 22/178 (12%), Positives = 51/178 (28%), Gaps = 15/178 (8%)
Query: 137 LHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFP 196
L + +A++ L AI+ P L + G F A + ++I+L +
Sbjct: 7 LSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPG 66
Query: 197 LLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLASGLLGLAKQCINLGAFRWGAS 256
+ ++ + + A + + + + +
Sbjct: 67 ASQLRHLVKAAQARKDFAQGAATAKVLGENEELTKSLV------SFNLSMVSQDYEQVSE 120
Query: 257 LLEDACKVAEANTRLAGNMSCIWKLHGDIQL-------TYAKCFPWA--EERQSLEFD 305
L ++ + LA + S D +L + A + +LE
Sbjct: 121 LALQIEELRQEKGFLANDTSFSDVRDIDDRLGGYIELFSTAGNYFLVPIASINTLEIK 178
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Score = 45.4 bits (107), Expect = 2e-05
Identities = 18/124 (14%), Positives = 36/124 (29%), Gaps = 1/124 (0%)
Query: 11 LEDSLEANPDDPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRF 70
L ++++A+P D SL L + + E+A E + + KL P+ L H
Sbjct: 19 LIEAIKASPKDASLRSSFIELLCIDGD-FERADEQLMQSIKLFPEYLPGASQLRHLVKAA 77
Query: 71 SIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFR 130
A V ++ L + + + +
Sbjct: 78 QARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFLAN 137
Query: 131 RLGY 134
+
Sbjct: 138 DTSF 141
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 334 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 55.8 bits (133), Expect = 1e-08
Identities = 15/183 (8%), Positives = 39/183 (21%), Gaps = 5/183 (2%)
Query: 8 LLQLEDSLEANPDDPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYY 67
L LEA+ + + + + + N N ++ Y
Sbjct: 129 LELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLL 188
Query: 68 TRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFW 127
+ + + ++ + + +S +
Sbjct: 189 PQLH-PQPDSGPQGRLPENVLLKELELVQNAFFT--DPNDQSAWF--YHRWLLGRAEPLF 243
Query: 128 AFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAI 187
+ E+ + LQ L A L ++ +
Sbjct: 244 RCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLK 303
Query: 188 ELD 190
+D
Sbjct: 304 AVD 306
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 334 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 51.5 bits (122), Expect = 3e-07
Identities = 27/262 (10%), Positives = 55/262 (20%), Gaps = 46/262 (17%)
Query: 26 LDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDT---------QR 76
+ E E E NP A + + +
Sbjct: 32 TQAVFQKRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKA 91
Query: 77 AIKCYQRAVSLSPDDSVS----GEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRL 132
+ + + ++P + L L E LE +C + R F +
Sbjct: 92 ELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELE--LCARFLEADERNFHCWDYR 149
Query: 133 -GYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYG------- 184
+E + I ++ W +L +
Sbjct: 150 RFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLL 209
Query: 185 -----------------------RAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLAL 221
R + +F S +L + + ++ Q
Sbjct: 210 KELELVQNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELESCKELQELE 269
Query: 222 KISSENVSAHYGLASGLLGLAK 243
+ + L L L
Sbjct: 270 PENKWCLLTIILLMRALDPLLY 291
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 334 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 43.8 bits (102), Expect = 7e-05
Identities = 37/337 (10%), Positives = 79/337 (23%), Gaps = 52/337 (15%)
Query: 37 ESKEKAAEHFVIAAKLNP--QNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVS 94
+++ K E Q R G + ++ + + +PD +
Sbjct: 13 QAEAKRLEREQKLKLYQSATQAVFQKRQAGELD-------ESVLELTSQILGANPDFATL 65
Query: 95 GEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIR 154
E+L+H + + L+ +R
Sbjct: 66 WNCRREVLQH------------------------LETEKSPEESAALVKAELGFLESCLR 101
Query: 155 GYPTSPHLWEALGLAYHRLGMFSA--AIKSYGRAIELD-DTSIFPLLESGNIFLMLGNFR 211
P S W RL + ++ R +E D
Sbjct: 102 VNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPA 161
Query: 212 KGVEQFQLALKISSENVSAHYGLASGLLGLAKQCINLGAFRWGASLLEDACKVAEANTRL 271
+ + + + N S+ + + L L Q + R ++L ++ +
Sbjct: 162 EELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT 221
Query: 272 AGNMSCIWKLHGDIQLTYAKCFPWAEERQSLEFDVETFSASIVSWKTTCLMAAISSKSSY 331
N W H + F + L + + S
Sbjct: 222 DPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTV----------------LQSELESCKEL 265
Query: 332 QRALYLAPWQANIYTDIAITSDLIYSLNEAYGHYQSA 368
Q W + D + E ++ +
Sbjct: 266 QELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTL 302
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Score = 54.8 bits (130), Expect = 1e-08
Identities = 38/236 (16%), Positives = 73/236 (30%), Gaps = 4/236 (1%)
Query: 11 LEDSLEANPDDPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRF 70
L + + L + G+ L+++ + A F A + P F YLG Y
Sbjct: 26 LASRALTDDERAQLLYERGV-LYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYL-TQ 83
Query: 71 SIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREA--SDKSPRAFWA 128
+ + A + + + L P + + L +GG++ L D +
Sbjct: 84 AGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSL 143
Query: 129 FRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIE 188
+ L +L K+ E ++ ++ E +
Sbjct: 144 WLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTS 203
Query: 189 LDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLASGLLGLAKQ 244
L + G +L LG+ F+LA+ + N H L L +
Sbjct: 204 LAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHRYALLELSLLGQD 259
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.9 bits (125), Expect = 9e-08
Identities = 38/297 (12%), Positives = 76/297 (25%), Gaps = 41/297 (13%)
Query: 166 LGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISS 225
GL + G A+ + A++ D + G + + L++
Sbjct: 25 EGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKP 84
Query: 226 ENVSAHYGLASGLLGLAKQCINLGAFRWGASLLEDACKVAEANTRLAGNMSCIWKLHGDI 285
+N +A LA + Q R + AG
Sbjct: 85 DNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILG 144
Query: 286 QLTYAKCFPWAEERQSLEFDVETFSASIVSWKTTCLMAAISSKSSYQRALYLA--PWQAN 343
L F +E + A+ L +
Sbjct: 145 SLLSDSLFLEVKE-------------------------------LFLAAVRLDPTSIDPD 173
Query: 344 IYTDIAITSDLIYSLNEAYGHYQSAWHVSEKMALGALLLEGDNCQFWVTLGCLSNYNGLK 403
+ + + +L ++A + +A V L L + ++ Y
Sbjct: 174 VQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYR--- 230
Query: 404 QHALIRGLQLDVSLADAWAHIGKLYGEVGEKKLARQAFDSARSIDPSLALPWAGMSA 460
R L+L + ++G +G + A + F A ++ P A
Sbjct: 231 -----RALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGA 282
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.4 bits (116), Expect = 1e-06
Identities = 45/268 (16%), Positives = 79/268 (29%), Gaps = 5/268 (1%)
Query: 132 LGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDD 191
G +L AV + A++ P W+ LG AI + R +EL
Sbjct: 25 EGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKP 84
Query: 192 TSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLASGLLGLAKQCI-NLGA 250
+ L+ F R+ E + L+ + G G +
Sbjct: 85 DNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILG 144
Query: 251 FRWGASLLEDACKVAEANTRLAGNMSCIWKLHGDIQLTYAKCFPWAEERQSLEFDVETFS 310
SL + ++ A RL G L +
Sbjct: 145 SLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPN 204
Query: 311 ASIVSWKTTCLMAAI----SSKSSYQRALYLAPWQANIYTDIAITSDLIYSLNEAYGHYQ 366
++ K +A + ++Y+RAL L P ++ I+ + + EA H+
Sbjct: 205 DYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFL 264
Query: 367 SAWHVSEKMALGALLLEGDNCQFWVTLG 394
A ++ K + W TL
Sbjct: 265 EALNMQRKSRGPRGEGGAMSENIWSTLR 292
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.3 bits (95), Expect = 5e-04
Identities = 43/246 (17%), Positives = 82/246 (33%), Gaps = 20/246 (8%)
Query: 16 EANP-DDPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDT 74
E NP D + GL + + A F A + +P++ A++YLG
Sbjct: 12 EENPLRDHPQPFEEGLRRLQEGDL-PNAVLLFEAAVQQDPKHMEAWQYLGTTQAENE-QE 69
Query: 75 QRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGY 134
AI +R + L PD+ + AL + + + R+ +P
Sbjct: 70 LLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEE 129
Query: 135 LQ---------------LHHKKWSEAVQSLQHAIRGYPT--SPHLWEALGLAYHRLGMFS 177
L + E + A+R PT P + LG+ ++ G +
Sbjct: 130 GAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYD 189
Query: 178 AAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLASG 237
A+ + A+ + + G + V ++ AL++ + + Y L
Sbjct: 190 KAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGIS 249
Query: 238 LLGLAK 243
+ L
Sbjct: 250 CINLGA 255
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.2 bits (92), Expect = 0.001
Identities = 34/195 (17%), Positives = 62/195 (31%), Gaps = 11/195 (5%)
Query: 50 AKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEA--LCELLEHGGK 107
+ R LG + + + AV L P L L G+
Sbjct: 130 GAGGAGLGPSKRILGSLLSD--SLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGE 187
Query: 108 ESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALG 167
V A P + + +LG + + EAV + + A+ P LG
Sbjct: 188 YDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLG 247
Query: 168 LAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGV----EQFQLALKI 223
++ LG A++ + A+ + S P E G + + + + Q
Sbjct: 248 ISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAA 307
Query: 224 SSENVSA---HYGLA 235
+ ++S +GL
Sbjct: 308 DARDLSTLLTMFGLP 322
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.3 bits (87), Expect = 0.004
Identities = 36/229 (15%), Positives = 65/229 (28%), Gaps = 20/229 (8%)
Query: 73 DTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRL 132
D A+ ++ AV P + + L +E L + R + P A L
Sbjct: 34 DLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMAL 93
Query: 133 GYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLA---------------YHRLGMFS 177
+ +A + L+ +R P HL +F
Sbjct: 94 AVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFL 153
Query: 178 AAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLASG 237
+ + A+ LD TSI P ++ LG ++ A+ + +S
Sbjct: 154 EVKELFLAAVRLDPTSIDP-----DVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLL 208
Query: 238 LLGLAKQCINLGAFRWGASLLEDACKVAEANTRLAGNMSCIWKLHGDIQ 286
L N + A ++ R N+ G +
Sbjct: 209 WNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHR 257
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.8 bits (105), Expect = 1e-05
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 7/136 (5%)
Query: 132 LGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDD 191
G L K W A+ + + +G Y L + A K++ R+I D
Sbjct: 11 EGVLAADKKDWKGALDAFSAVQ---DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDK 67
Query: 192 TSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLASGLLGLAKQCINLGAF 251
+ G ++ + ++ + AL N Y +LGL +
Sbjct: 68 HLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDY----KILGLQFKLFACEVL 123
Query: 252 RWGASLLEDACKVAEA 267
A + + +A
Sbjct: 124 YNIAFMYAKKEEWKKA 139
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.0 bits (90), Expect = 0.001
Identities = 20/174 (11%), Positives = 50/174 (28%), Gaps = 27/174 (15%)
Query: 40 EKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALC 99
+ A + F + + ++ +G YT + A K + R+++ +V+
Sbjct: 22 KGALDAF---SAVQDPHSRICFNIGCMYTILK-NMTEAEKAFTRSINRDKHLAVAYFQRG 77
Query: 100 ELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTS 159
L K L + +EA L + ++ + ++ +
Sbjct: 78 MLYYQTEKYDLAIKDLKEA------------------LIQLRGNQLIDYKILGLQFKLFA 119
Query: 160 PHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKG 213
+ + Y + + A + A + I + K
Sbjct: 120 CEVLYNIAFMYAKKEEWKKAEEQLALATSMK-----SEPRHSKIDKAMECVWKQ 168
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.7 bits (89), Expect = 0.002
Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 19/136 (13%)
Query: 116 REASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGM 175
D R + +G + K +EA ++ +I + G+ Y++
Sbjct: 29 SAVQDPHSRICF---NIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEK 85
Query: 176 FSAAIKSYGRAIELDD----------------TSIFPLLESGNIFLMLGNFRKGVEQFQL 219
+ AIK A+ + L ++ ++K EQ L
Sbjct: 86 YDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLAL 145
Query: 220 ALKISSENVSAHYGLA 235
A + SE + A
Sbjct: 146 ATSMKSEPRHSKIDKA 161
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} Length = 159 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.0 bits (97), Expect = 1e-04
Identities = 27/140 (19%), Positives = 48/140 (34%), Gaps = 5/140 (3%)
Query: 128 AFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAI 187
+ K + A++ AI P++ + LAY R + A+ RAI
Sbjct: 12 ELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAI 71
Query: 188 ELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLASGLLGLAKQCIN 247
ELD I + LG FR + ++ +K+ + A + +
Sbjct: 72 ELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKM-----KYQECNKIVK 126
Query: 248 LGAFRWGASLLEDACKVAEA 267
AF + E V ++
Sbjct: 127 QKAFERAIAGDEHKRSVVDS 146
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} Length = 122 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.3 bits (91), Expect = 4e-04
Identities = 12/103 (11%), Positives = 32/103 (31%), Gaps = 5/103 (4%)
Query: 10 QLEDSLEANPDDPSLHLDL--GLHLWENSESKEKAAEHF--VIAAKLNPQNAVAFRYLGH 65
+ + A S + L ++ K ++ + YL
Sbjct: 21 KFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAV 80
Query: 66 YYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKE 108
R + ++A+K + + P ++ + E + + K+
Sbjct: 81 GNYRL-KEYEKALKYVRGLLQTEPQNNQAKELERLIDKAMKKD 122
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Length = 366 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Score = 40.7 bits (93), Expect = 8e-04
Identities = 35/307 (11%), Positives = 71/307 (23%), Gaps = 21/307 (6%)
Query: 166 LGLAYHRLGMFSAAIKSYGRAIELDDTSIFP-----LLESGNIFLMLGNFRKGVEQFQLA 220
G A + A+E F G + G + + Q
Sbjct: 18 RAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQT 77
Query: 221 LKISSENVSAHYGLASGL-----------LGLAKQCINLGAFRWGASLLEDACKVAEANT 269
+++ ++ HY L S + L A + LE
Sbjct: 78 EQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVR 137
Query: 270 RLAGNMSCIWKLHGDIQLTYAKCFPWAEERQSLEFDVETFSA---SIVSWKTTCLMAAIS 326
A + +L + + + +
Sbjct: 138 IRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNR 197
Query: 327 SKSSYQRALYLAPWQANIYTDIAITSDLIYSLNEAYGHYQSAWHVSEKMALGALLLEGDN 386
++ Y + W +N I + A + +
Sbjct: 198 LENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNI 257
Query: 387 CQFWVTLGCLSNYNGLKQHAL--IRGLQLDVSLADAWAHIGKLYGEVGEKKLARQAFDSA 444
+ + LG + + R L+L L + +LY + G K A++ A
Sbjct: 258 ARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDA 317
Query: 445 RSIDPSL 451
+
Sbjct: 318 LKLANRT 324
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 290 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 39.6 bits (91), Expect = 0.001
Identities = 25/177 (14%), Positives = 43/177 (24%), Gaps = 35/177 (19%)
Query: 30 LHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSP 89
LH + + + A + + + F A Y + + S
Sbjct: 131 LHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKAL-DGQYIEASDIYSKLIKSSM 189
Query: 90 DDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSL 149
+ +S F + G QL A ++L
Sbjct: 190 GNRLS---------------------------QWSLKDYFLKKGLCQLAATDAVAAARTL 222
Query: 150 QHAIRGYPTSPHLWEA-----LGLAYHR--LGMFSAAIKSYGRAIELDDTSIFPLLE 199
Q P E+ L A + S K + + LD I L +
Sbjct: 223 QEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKITILNK 279
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 128 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.2 bits (85), Expect = 0.003
Identities = 19/138 (13%), Positives = 41/138 (29%), Gaps = 28/138 (20%)
Query: 55 QNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVV 114
+ A+ + LG+ + D A+K Y +A L P +
Sbjct: 2 KQALKEKELGNDAYKKK-DFDTALKHYDKAKELDPTNMTYITNQA--------------- 45
Query: 115 CREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLG 174
+ G + +A++ + Y + +G +Y +
Sbjct: 46 ------------AVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEE 93
Query: 175 MFSAAIKSYGRAIELDDT 192
+ AI Y +++ T
Sbjct: 94 KYKDAIHFYNKSLAEHRT 111
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1173 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 100.0 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 100.0 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.9 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.89 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.85 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.82 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.78 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.77 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.76 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.7 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.63 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.61 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.5 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.45 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 99.44 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.43 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.41 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 99.39 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 99.38 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 99.37 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 99.37 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 99.36 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 99.35 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 99.33 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 99.28 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 99.25 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 99.2 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 99.18 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.15 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 99.14 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.13 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 99.11 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 99.11 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 99.11 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 99.09 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.08 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 99.07 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 99.07 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 99.07 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 99.05 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 99.05 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 99.03 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.03 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 99.02 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 98.71 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 98.61 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 98.61 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 98.56 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 98.51 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 98.51 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 98.32 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 98.26 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 97.45 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 97.43 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 97.41 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 97.35 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 97.3 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 94.8 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 94.36 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 91.09 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=4.6e-32 Score=312.53 Aligned_cols=164 Identities=21% Similarity=0.215 Sum_probs=116.6
Q ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhHHHHhHHHHHHhcCCHHHHHHHHHHHHhcCCc
Q 045024 406 ALIRGLQLDVSLADAWAHIGKLYGEVGEKKLARQAFDSARSIDPSLALPWAGMSADVQASESLVDDAFESCLRAVQILPL 485 (1173)
Q Consensus 406 a~~kal~l~p~~~~a~~~Lg~~y~~~g~~e~A~~~f~~al~~~P~~~~a~~~l~a~~~~~~g~~~eA~~~~~~al~~~p~ 485 (1173)
.|.++...+|..+..+..+|.++...|++++|+..|+++++++|+++.++.. ++.++...|++++|++.|++++
T Consensus 225 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~-l~~~~~~~~~~~~A~~~~~~~~----- 298 (388)
T d1w3ba_ 225 AYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCN-LANALKEKGSVAEAEDCYNTAL----- 298 (388)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHH-HHHHHHHHSCHHHHHHHHHHHH-----
T ss_pred HHHHhHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHH-HHHHHHHcCCHHHHHHHHHhhh-----
Confidence 4444555566666777777777777777777777777777777777777776 5557777777776666544433
Q ss_pred hHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCCCCCCCchH
Q 045024 486 AEFQIGLAKLAKLSGHLSSSQVFGAIQQAIQRGPHYPESHNLYGLVCEARSDYQAAVVSYRLARYAISSSSGTVPNSHFQ 565 (1173)
Q Consensus 486 ~~~~~~la~l~~~~g~~~~~~A~~~l~~al~~~P~~~~a~~~lg~i~~~~g~~~~A~~~~~kAl~l~~~~pe~~~~~~~~ 565 (1173)
...|.++..+..+|.++...|++++|++.|++++ +..|+ ..
T Consensus 299 ------------------------------~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al---~~~p~------~~ 339 (388)
T d1w3ba_ 299 ------------------------------RLCPTHADSLNNLANIKREQGNIEEAVRLYRKAL---EVFPE------FA 339 (388)
T ss_dssp ------------------------------HHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHT---TSCTT------CH
T ss_pred ------------------------------ccCCccchhhhHHHHHHHHCCCHHHHHHHHHHHH---HhCCC------CH
Confidence 3446667777777777888888888888888774 33332 34
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCC
Q 045024 566 DISINLARSLSRAGNALDAVRECESLERQGMLDAEVLQVYAFSLWQLGK 614 (1173)
Q Consensus 566 ~~~~~La~~~~~~g~~~eAi~~~~~~~~~~p~~~~~~~~la~a~~~~g~ 614 (1173)
.+++++|.++...|++++|++.|+++++.+|+++.++..+|.+|.++||
T Consensus 340 ~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 340 AAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 5777788888888888888888888888888888888888888877775
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=6.6e-32 Score=311.20 Aligned_cols=386 Identities=19% Similarity=0.225 Sum_probs=331.7
Q ss_pred HHHHHHHHHccCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHC
Q 045024 26 LDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHG 105 (1173)
Q Consensus 26 ~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~~ 105 (1173)
+.+|..+++.|+ +++|+..|+++++.+|+++.++..+|.++.. .|++++|+..|+++++.+|+++.++..+|.++...
T Consensus 3 l~la~~~~~~G~-~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~-~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~ 80 (388)
T d1w3ba_ 3 MELAHREYQAGD-FEAAERHCMQLWRQEPDNTGVLLLLSSIHFQ-CRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKER 80 (388)
T ss_dssp CTHHHHHHHHTC-HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhhh
Confidence 457888999987 9999999999999999999999999999999 99999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 045024 106 GKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGR 185 (1173)
Q Consensus 106 g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 185 (1173)
|++++|+..+..+.+..|.........+......+....+...........+.........+......+....+...+.+
T Consensus 81 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (388)
T d1w3ba_ 81 GQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLK 160 (388)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhHHHHHH
Confidence 99999999999999999999999999999999999999999999999888888888999999999999999999999999
Q ss_pred HHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHH
Q 045024 186 AIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLASGLLGLAKQCINLGAFRWGASLLEDACKVA 265 (1173)
Q Consensus 186 al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~l~~~~~a~g~~~~A~~~l~~Al~~~ 265 (1173)
.+...|++..++..+|..+...|++++|...++++++.+|+++.++..+|.++...++
T Consensus 161 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~---------------------- 218 (388)
T d1w3ba_ 161 AIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARI---------------------- 218 (388)
T ss_dssp HHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTC----------------------
T ss_pred hhccCcchhHHHHhhcccccccCcHHHHHHHHHHHHHhCcccHHHHHHHhhhhhcccc----------------------
Confidence 9999999999999999999999999999999999999999999888777776665444
Q ss_pred HHHhhhcCChHHHHHHhchHHHHHhhccchhhhhhchhhhhhhhhhhhHhhHhhhhHHHHHHHHHHHHHHhcCCCCHHHH
Q 045024 266 EANTRLAGNMSCIWKLHGDIQLTYAKCFPWAEERQSLEFDVETFSASIVSWKTTCLMAAISSKSSYQRALYLAPWQANIY 345 (1173)
Q Consensus 266 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~ 345 (1173)
+++|+..|+++....|..+..+
T Consensus 219 ----------------------------------------------------------~~~A~~~~~~~~~~~~~~~~~~ 240 (388)
T d1w3ba_ 219 ----------------------------------------------------------FDRAVAAYLRALSLSPNHAVVH 240 (388)
T ss_dssp ----------------------------------------------------------TTHHHHHHHHHHHHCTTCHHHH
T ss_pred ----------------------------------------------------------HHHHHHHHHHhHHHhhhHHHHH
Confidence 2346666777777888888888
Q ss_pred HHHHHHHHHHhhHHHhhhhhhhhhHHHHHHHHHHHhhcCCCHHHHHHHHHhhcccHHHHHHHHHHHhcCCCcHHHHHHHH
Q 045024 346 TDIAITSDLIYSLNEAYGHYQSAWHVSEKMALGALLLEGDNCQFWVTLGCLSNYNGLKQHALIRGLQLDVSLADAWAHIG 425 (1173)
Q Consensus 346 ~~la~~~~~~g~~~eA~~~~~~~~~~A~k~~~~al~~~p~~~~~~~~Lg~~~~~~~~a~~a~~kal~l~p~~~~a~~~Lg 425 (1173)
..+|.++...|++++| ...|+++++++|+++.++..+|
T Consensus 241 ~~l~~~~~~~~~~~~A------------------------------------------~~~~~~al~~~p~~~~~~~~l~ 278 (388)
T d1w3ba_ 241 GNLACVYYEQGLIDLA------------------------------------------IDTYRRAIELQPHFPDAYCNLA 278 (388)
T ss_dssp HHHHHHHHHTTCHHHH------------------------------------------HHHHHHHHHTCSSCHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHH------------------------------------------HHHHHHHHHhCCCCHHHHHHHH
Confidence 8899988888887776 3467777888888888999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCChhHHHHhHHHHHHhcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCCChH
Q 045024 426 KLYGEVGEKKLARQAFDSARSIDPSLALPWAGMSADVQASESLVDDAFESCLRAVQILPLAEFQIGLAKLAKLSGHLSSS 505 (1173)
Q Consensus 426 ~~y~~~g~~e~A~~~f~~al~~~P~~~~a~~~l~a~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~la~l~~~~g~~~~~ 505 (1173)
.++...|++++|+..|++++...|.+...+.. ++.++...|++++|+..|+++++++
T Consensus 279 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~A~~~~~~al~~~---------------------- 335 (388)
T d1w3ba_ 279 NALKEKGSVAEAEDCYNTALRLCPTHADSLNN-LANIKREQGNIEEAVRLYRKALEVF---------------------- 335 (388)
T ss_dssp HHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHH-HHHHHHTTTCHHHHHHHHHHHTTSC----------------------
T ss_pred HHHHHcCCHHHHHHHHHhhhccCCccchhhhH-HHHHHHHCCCHHHHHHHHHHHHHhC----------------------
Confidence 99999999999999999999999998888877 6668888899888888777766654
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHHHhcCC
Q 045024 506 QVFGAIQQAIQRGPHYPESHNLYGLVCEARSDYQAAVVSYRLARYAISSSSGTVPNSHFQDISINLARSLSRAGN 580 (1173)
Q Consensus 506 ~A~~~l~~al~~~P~~~~a~~~lg~i~~~~g~~~~A~~~~~kAl~l~~~~pe~~~~~~~~~~~~~La~~~~~~g~ 580 (1173)
|+++.++..+|.++...|++++|+..|++++++ +| .+..++.++|.+|.++||
T Consensus 336 -------------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l---~P------~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 336 -------------PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI---SP------TFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp -------------TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT---CT------TCHHHHHHHHHHHHHTCC
T ss_pred -------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CC------CCHHHHHHHHHHHHHcCC
Confidence 566677777777777777777777777777533 33 334477777777777765
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.90 E-value=1.4e-22 Score=228.30 Aligned_cols=237 Identities=18% Similarity=0.244 Sum_probs=210.6
Q ss_pred HHHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 045024 22 PSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCEL 101 (1173)
Q Consensus 22 ~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~~ 101 (1173)
....+..|..++..|+ +++|+..|+++++.+|+++.+|..+|.++.. .|++++|+..|.++++++|++...+..+|.+
T Consensus 19 ~~~~~~~g~~~~~~g~-~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~la~~ 96 (323)
T d1fcha_ 19 HPQPFEEGLRRLQEGD-LPNAVLLFEAAVQQDPKHMEAWQYLGTTQAE-NEQELLAISALRRCLELKPDNQTALMALAVS 96 (323)
T ss_dssp CSSHHHHHHHHHHTTC-HHHHHHHHHHHHHSCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCChHHHHHHHHhhhcccccccccccccccc
Confidence 3456789999999998 9999999999999999999999999999999 9999999999999999999999999999999
Q ss_pred HHHCCCHHHHHHHHHHHHhhCCCcHHH---------------HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHH
Q 045024 102 LEHGGKESLEVVVCREASDKSPRAFWA---------------FRRLGYLQLHHKKWSEAVQSLQHAIRGYPT--SPHLWE 164 (1173)
Q Consensus 102 ~~~~g~~~~A~~~~~~al~~~p~~~~a---------------~~~la~~~~~~g~~~~A~~~l~~al~~~p~--~~~~~~ 164 (1173)
+...|++++|+..+++++...|..... .......+...+.+.+|+..|++++..+|+ ++.++.
T Consensus 97 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~ 176 (323)
T d1fcha_ 97 FTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQC 176 (323)
T ss_dssp HHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHH
T ss_pred ccccccccccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccch
Confidence 999999999999999999998864221 111223345567889999999999999986 577889
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHH
Q 045024 165 ALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLASGLLGLAKQ 244 (1173)
Q Consensus 165 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~l~~~ 244 (1173)
.+|.++...|++++|+..|++++..+|+++.++..+|.++...|++++|+..|+++++.+|+++.+++.+|.++..+|+
T Consensus 177 ~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~- 255 (323)
T d1fcha_ 177 GLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGA- 255 (323)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC-
T ss_pred hhHHHHHHHHHHhhhhcccccccccccccccchhhhhhcccccccchhHHHHHHHHHHHhhccHHHHHHHHHHHHHCCC-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999888888877665
Q ss_pred HHHhhcHHHHHHHHHHHHHHHHH
Q 045024 245 CINLGAFRWGASLLEDACKVAEA 267 (1173)
Q Consensus 245 ~~a~g~~~~A~~~l~~Al~~~~~ 267 (1173)
+++|+..|++|+++.+.
T Consensus 256 ------~~~A~~~~~~al~l~p~ 272 (323)
T d1fcha_ 256 ------HREAVEHFLEALNMQRK 272 (323)
T ss_dssp ------HHHHHHHHHHHHHHHHT
T ss_pred ------HHHHHHHHHHHHHhCCc
Confidence 77777777777766554
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.89 E-value=7.5e-22 Score=222.15 Aligned_cols=231 Identities=20% Similarity=0.175 Sum_probs=205.9
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHH
Q 045024 4 KGALLLQLEDSLEANPDDPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQR 83 (1173)
Q Consensus 4 ~~aAi~~l~~al~~~P~~~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~ 83 (1173)
...|+..|+++++.+|+++.+++.+|.++...|+ +++|+..|.++++++|+++..+..+|.++.. .|++++|+..+++
T Consensus 35 ~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~-~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~~~~~~A~~~~~~ 112 (323)
T d1fcha_ 35 LPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQ-ELLAISALRRCLELKPDNQTALMALAVSFTN-ESLQRQACEILRD 112 (323)
T ss_dssp HHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-hHHHHHHHHhhhccccccccccccccccccc-cccccccccchhh
Confidence 3456999999999999999999999999999987 9999999999999999999999999999999 9999999999999
Q ss_pred HHhhCCCCHHHH---------------HHHHHHHHHCCCHHHHHHHHHHHHhhCCC--cHHHHHHHHHHHHHcCCHHHHH
Q 045024 84 AVSLSPDDSVSG---------------EALCELLEHGGKESLEVVVCREASDKSPR--AFWAFRRLGYLQLHHKKWSEAV 146 (1173)
Q Consensus 84 al~~~p~~~~a~---------------~~La~~~~~~g~~~~A~~~~~~al~~~p~--~~~a~~~la~~~~~~g~~~~A~ 146 (1173)
++...|...... ......+...+.+.+|+..+.++++.+|+ ++.++..+|.++...|++++|+
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~ 192 (323)
T d1fcha_ 113 WLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAV 192 (323)
T ss_dssp HHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHhhhh
Confidence 999998764321 11222344557789999999999999987 4788899999999999999999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCC
Q 045024 147 QSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSE 226 (1173)
Q Consensus 147 ~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 226 (1173)
..|++++..+|+++.++..+|.++...|++++|++.|+++++.+|+++.+++.+|.+|...|++++|+..|+++++++|+
T Consensus 193 ~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~ 272 (323)
T d1fcha_ 193 DCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRK 272 (323)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHT
T ss_pred cccccccccccccccchhhhhhcccccccchhHHHHHHHHHHHhhccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHH
Q 045024 227 NVSAHYGLAS 236 (1173)
Q Consensus 227 ~~~a~~~la~ 236 (1173)
+.......+.
T Consensus 273 ~~~~~~~~~~ 282 (323)
T d1fcha_ 273 SRGPRGEGGA 282 (323)
T ss_dssp C------CCC
T ss_pred ChhhhhhhHH
Confidence 8776554433
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.85 E-value=4.3e-20 Score=206.92 Aligned_cols=262 Identities=11% Similarity=0.060 Sum_probs=223.7
Q ss_pred HhCCCCHHHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccC-CHHHHHHHHHHHHhhCCCCHHH
Q 045024 16 EANPDDPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSI-DTQRAIKCYQRAVSLSPDDSVS 94 (1173)
Q Consensus 16 ~~~P~~~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g-~~~eA~~~~~~al~~~p~~~~a 94 (1173)
..+|+..+++..+|.++...+. +++|+..++++++++|++..+|..+|.++.. .| ++++|+..++++++.+|++..+
T Consensus 37 ~~~p~~~~a~~~~~~~~~~~e~-~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~-l~~~~~eal~~~~~al~~~p~~~~a 114 (315)
T d2h6fa1 37 IYSDKFRDVYDYFRAVLQRDER-SERAFKLTRDAIELNAANYTVWHFRRVLLKS-LQKDLHEEMNYITAIIEEQPKNYQV 114 (315)
T ss_dssp CCCHHHHHHHHHHHHHHHHTCC-CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCCHHHHHHHHHHHHHHCTTCHHH
T ss_pred ccCHHHHHHHHHHHHHHHhCCc-hHHHHHHHHHHHHHCCCChHHHHHHHHHHHH-hCcCHHHHHHHHHHHHHHHHhhhhH
Confidence 3467778899999999988876 9999999999999999999999999999999 76 5999999999999999999999
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 045024 95 GEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLG 174 (1173)
Q Consensus 95 ~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g 174 (1173)
+..+|.++...|++++|+..++++++.+|++..+|..+|.++...|++++|+..++++++++|.+..+|..+|.++...+
T Consensus 115 ~~~~~~~~~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~~a~~~r~~~l~~~~ 194 (315)
T d2h6fa1 115 WHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTT 194 (315)
T ss_dssp HHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHhHHHHhhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCccHHHHHHHHHHHHHcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998877
Q ss_pred C------HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCH--HHHHHHHHHHHHHHHHHH
Q 045024 175 M------FSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENV--SAHYGLASGLLGLAKQCI 246 (1173)
Q Consensus 175 ~------~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~--~a~~~la~~~~~l~~~~~ 246 (1173)
. +++|+..+.++++.+|++..++..++.++... ..+++.+.+++++++.|+.. .+...++.++....
T Consensus 195 ~~~~~~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~~~~---- 269 (315)
T d2h6fa1 195 GYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDR-GLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDML---- 269 (315)
T ss_dssp CSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTT-CGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHH----
T ss_pred ccchhhhhHHhHHHHHHHHHhCCCchHHHHHHHHHHHhc-ChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHH----
Confidence 6 68999999999999999999999999986654 46889999999999888754 34444555554332
Q ss_pred HhhcHHHHHHHHHHHHHHHHHHh-hhcCChHHHHHHhchH
Q 045024 247 NLGAFRWGASLLEDACKVAEANT-RLAGNMSCIWKLHGDI 285 (1173)
Q Consensus 247 a~g~~~~A~~~l~~Al~~~~~~~-~~~~~~~~~~~~~g~~ 285 (1173)
.+..+.+...+++|++.+.... ..++.....|...+..
T Consensus 270 -~~~~~~~~~~~~ka~~l~~~l~~~~DpiR~~yw~~~~~~ 308 (315)
T d2h6fa1 270 -ENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRS 308 (315)
T ss_dssp -HTTCSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHH
T ss_pred -hcCHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 2344556666777777766543 3445455556555544
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.82 E-value=4.5e-19 Score=198.53 Aligned_cols=188 Identities=12% Similarity=0.095 Sum_probs=176.6
Q ss_pred HhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHhhCCCcHHHH
Q 045024 51 KLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGG-KESLEVVVCREASDKSPRAFWAF 129 (1173)
Q Consensus 51 ~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~~g-~~~~A~~~~~~al~~~p~~~~a~ 129 (1173)
..+|+..+++..+|.++.+ .+.+++|+..++++++++|++..+|..+|.++...| ++++|+..++++++.+|++..+|
T Consensus 37 ~~~p~~~~a~~~~~~~~~~-~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~ 115 (315)
T d2h6fa1 37 IYSDKFRDVYDYFRAVLQR-DERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVW 115 (315)
T ss_dssp CCCHHHHHHHHHHHHHHHH-TCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred ccCHHHHHHHHHHHHHHHh-CCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHH
Confidence 3456778899999999999 999999999999999999999999999999999887 59999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCC
Q 045024 130 RRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGN 209 (1173)
Q Consensus 130 ~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~ 209 (1173)
..+|.++..+|++++|+..++++++++|++..+|..+|.++...|++++|+..|+++++++|.+..+|..+|.++...|.
T Consensus 116 ~~~~~~~~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~~a~~~r~~~l~~~~~ 195 (315)
T d2h6fa1 116 HHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTG 195 (315)
T ss_dssp HHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHhHHHHhhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCccHHHHHHHHHHHHHccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988877
Q ss_pred ------hHHHHHHHHHHHhhcCCCHHHHHHHHHHHH
Q 045024 210 ------FRKGVEQFQLALKISSENVSAHYGLASGLL 239 (1173)
Q Consensus 210 ------~~~A~~~~~~al~~~p~~~~a~~~la~~~~ 239 (1173)
+++|+..+.++++.+|++..++..++.++.
T Consensus 196 ~~~~~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~ 231 (315)
T d2h6fa1 196 YNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQ 231 (315)
T ss_dssp SCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHT
T ss_pred cchhhhhHHhHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 578999999999999999998877766553
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.78 E-value=2.1e-19 Score=203.41 Aligned_cols=274 Identities=11% Similarity=-0.038 Sum_probs=224.2
Q ss_pred HccCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc----------CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 045024 34 ENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFS----------IDTQRAIKCYQRAVSLSPDDSVSGEALCELLE 103 (1173)
Q Consensus 34 ~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~----------g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~ 103 (1173)
..++..++|+..++++++.+|++..+|..++.++.. . |++++|+..++++++.+|++..++..+|.++.
T Consensus 40 ~~~~~~~~al~~~~~~l~~~P~~~~a~~~r~~~l~~-l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~ 118 (334)
T d1dcea1 40 QAGELDESVLELTSQILGANPDFATLWNCRREVLQH-LETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLS 118 (334)
T ss_dssp HTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hcccccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH-HhhhcchHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHhhHHHH
Confidence 445435899999999999999999988887777655 3 34789999999999999999999999998887
Q ss_pred HCCC--HHHHHHHHHHHHhhCCCcHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 045024 104 HGGK--ESLEVVVCREASDKSPRAFWAF-RRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAI 180 (1173)
Q Consensus 104 ~~g~--~~~A~~~~~~al~~~p~~~~a~-~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 180 (1173)
..++ +++|+..++++++.+|++..++ ...|.++...+.+++|+..+++++..+|.+..+|..+|.++...|++++|+
T Consensus 119 ~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~ 198 (334)
T d1dcea1 119 RLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSG 198 (334)
T ss_dssp TCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSS
T ss_pred HhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCHHHHH
Confidence 7664 7899999999999999888775 467788888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHH
Q 045024 181 KSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLASGLLGLAKQCINLGAFRWGASLLED 260 (1173)
Q Consensus 181 ~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~l~~~~~a~g~~~~A~~~l~~ 260 (1173)
..++++++..|..... ...+...+..+++...|.+++...|.+...+..++.++...++ +.+
T Consensus 199 ~~~~~~~~~~~~~~~~----~~~~~~l~~~~~a~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~--------------~~~ 260 (334)
T d1dcea1 199 PQGRLPENVLLKELEL----VQNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQS--------------ELE 260 (334)
T ss_dssp SCCSSCHHHHHHHHHH----HHHHHHHCSSCSHHHHHHHHHHSCCCCSSSCCCCHHHHHHHHH--------------HHH
T ss_pred HHHHHhHHhHHHHHHH----HHHHHHhcchhHHHHHHHHHHHhCcchhhHHHHHHHHHHHHhh--------------HHH
Confidence 8888888887665443 3445667888889999999999999888888888888888777 566
Q ss_pred HHHHHHHHhhhcCChHHHHHHhchHHHHHhhccchhhhhhchhhhhhhhhhhhHhhHhhhhHHHHHHHHHHHHHHhcCCC
Q 045024 261 ACKVAEANTRLAGNMSCIWKLHGDIQLTYAKCFPWAEERQSLEFDVETFSASIVSWKTTCLMAAISSKSSYQRALYLAPW 340 (1173)
Q Consensus 261 Al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~ 340 (1173)
++..+.+.....|....++..+|.++...+ ..++|+..|+++++++|.
T Consensus 261 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~--------------------------------~~~eA~~~~~~ai~ldP~ 308 (334)
T d1dcea1 261 SCKELQELEPENKWCLLTIILLMRALDPLL--------------------------------YEKETLQYFSTLKAVDPM 308 (334)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHCTGG--------------------------------GHHHHHHHHHHHHHHCGG
T ss_pred HHHHHHHHHhhCchHHHHHHHHHHHHHHCC--------------------------------CHHHHHHHHHHHHHHCcc
Confidence 666666666777777777777777664433 377899999999999999
Q ss_pred CHHHHHHHHHHHHHHhhH
Q 045024 341 QANIYTDIAITSDLIYSL 358 (1173)
Q Consensus 341 ~~~~~~~la~~~~~~g~~ 358 (1173)
+...|..++..+.....+
T Consensus 309 ~~~y~~~L~~~~~~e~~~ 326 (334)
T d1dcea1 309 RAAYLDDLRSKFLLENSV 326 (334)
T ss_dssp GHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhHhhHH
Confidence 999999998887644333
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.77 E-value=1.3e-17 Score=180.59 Aligned_cols=221 Identities=16% Similarity=0.156 Sum_probs=186.6
Q ss_pred HHHHHHHHHHHhCC----CCHHHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHH
Q 045024 6 ALLLQLEDSLEANP----DDPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCY 81 (1173)
Q Consensus 6 aAi~~l~~al~~~P----~~~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~ 81 (1173)
.|+..+++++...+ ..+.+++.+|.+|...|+ +++|+..|+++++++|+++.+++.+|.++.. .|++++|+..|
T Consensus 17 ~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~-~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~-~g~~~~A~~~~ 94 (259)
T d1xnfa_ 17 VILARMEQILASRALTDDERAQLLYERGVLYDSLGL-RALARNDFSQALAIRPDMPEVFNYLGIYLTQ-AGNFDAAYEAF 94 (259)
T ss_dssp HHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCC-HHHHHHHHHHhhccCCCCHHHHhhhchHHHH-HHHHHHhhhhh
Confidence 36888888887543 356799999999999998 9999999999999999999999999999999 99999999999
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 045024 82 QRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPH 161 (1173)
Q Consensus 82 ~~al~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~ 161 (1173)
+++++++|+++.++..+|.++...|++++|+..++++++.+|++......++..+...+..+.+...........+....
T Consensus 95 ~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (259)
T d1xnfa_ 95 DSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWG 174 (259)
T ss_dssp HHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCSTH
T ss_pred hHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccchhhhh
Confidence 99999999999999999999999999999999999999999999998888888888888777777666666666554432
Q ss_pred HHHHHHHHHH----HcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCHHH
Q 045024 162 LWEALGLAYH----RLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSA 230 (1173)
Q Consensus 162 ~~~~la~~~~----~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a 230 (1173)
. .+...+. ..+.++.+...+.......|....+++.+|.+|...|++++|+..|++++..+|++...
T Consensus 175 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 245 (259)
T d1xnfa_ 175 W--NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVE 245 (259)
T ss_dssp H--HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHH
T ss_pred h--hHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHH
Confidence 1 1122221 22345566666666666777778899999999999999999999999999999987543
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.76 E-value=6.9e-18 Score=190.66 Aligned_cols=262 Identities=11% Similarity=0.011 Sum_probs=166.6
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCC----------HHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCC-
Q 045024 73 DTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGK----------ESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKK- 141 (1173)
Q Consensus 73 ~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~~g~----------~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~- 141 (1173)
..++|+..++++++.+|++..+|...+.++...++ +.+|+..++++++.+|+++.+|..+|.++...++
T Consensus 44 ~~~~al~~~~~~l~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~~~~~ 123 (334)
T d1dcea1 44 LDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEP 123 (334)
T ss_dssp CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSC
T ss_pred ccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHhhHHHHHhccc
Confidence 34677777777777777777777766666544332 4455555555555555555555555555544432
Q ss_pred -HHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHH
Q 045024 142 -WSEAVQSLQHAIRGYPTSPHLW-EALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQL 219 (1173)
Q Consensus 142 -~~~A~~~l~~al~~~p~~~~~~-~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~ 219 (1173)
+++|+..+++++..+|.+..++ ...|.++...|++++|+..++++++.+|.+..++..+|.++..+|++++|+..+++
T Consensus 124 ~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~~~~~~ 203 (334)
T d1dcea1 124 NWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRL 203 (334)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSS
T ss_pred cHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 5555555555555555555543 23445555555555555555555555555555555555555555555555544444
Q ss_pred HHhhcCCCHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHhhhcCChHHHHHHhchHHHHHhhccchhhhh
Q 045024 220 ALKISSENVSAHYGLASGLLGLAKQCINLGAFRWGASLLEDACKVAEANTRLAGNMSCIWKLHGDIQLTYAKCFPWAEER 299 (1173)
Q Consensus 220 al~~~p~~~~a~~~la~~~~~l~~~~~a~g~~~~A~~~l~~Al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 299 (1173)
+++..|.+.. .......
T Consensus 204 ~~~~~~~~~~----------------------------------~~~~~~~----------------------------- 220 (334)
T d1dcea1 204 PENVLLKELE----------------------------------LVQNAFF----------------------------- 220 (334)
T ss_dssp CHHHHHHHHH----------------------------------HHHHHHH-----------------------------
T ss_pred hHHhHHHHHH----------------------------------HHHHHHH-----------------------------
Confidence 4443332111 0000000
Q ss_pred hchhhhhhhhhhhhHhhHhhhhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHhhhhhhhhhHHHHHHHHHH
Q 045024 300 QSLEFDVETFSASIVSWKTTCLMAAISSKSSYQRALYLAPWQANIYTDIAITSDLIYSLNEAYGHYQSAWHVSEKMALGA 379 (1173)
Q Consensus 300 ~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~A~k~~~~a 379 (1173)
.+..+++...|.+++...|.+...+..++..+...+++.++
T Consensus 221 ---------------------l~~~~~a~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a------------------ 261 (334)
T d1dcea1 221 ---------------------TDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELES------------------ 261 (334)
T ss_dssp ---------------------HCSSCSHHHHHHHHHHSCCCCSSSCCCCHHHHHHHHHHHHH------------------
T ss_pred ---------------------hcchhHHHHHHHHHHHhCcchhhHHHHHHHHHHHHhhHHHH------------------
Confidence 00123567778888888888888888888877777766655
Q ss_pred HhhcCCCHHHHHHHHHhhcccHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhHHHHhH
Q 045024 380 LLLEGDNCQFWVTLGCLSNYNGLKQHALIRGLQLDVSLADAWAHIGKLYGEVGEKKLARQAFDSARSIDPSLALPWAGMS 459 (1173)
Q Consensus 380 l~~~p~~~~~~~~Lg~~~~~~~~a~~a~~kal~l~p~~~~a~~~Lg~~y~~~g~~e~A~~~f~~al~~~P~~~~a~~~l~ 459 (1173)
...+.+++..+|.++.++..+|.+|...|++++|+++|+++++++|+....|..+.
T Consensus 262 ------------------------~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~~~L~ 317 (334)
T d1dcea1 262 ------------------------CKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLR 317 (334)
T ss_dssp ------------------------HHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHH
T ss_pred ------------------------HHHHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcccHHHHHHHH
Confidence 44677888888999999999999999999999999999999999999888888744
Q ss_pred H
Q 045024 460 A 460 (1173)
Q Consensus 460 a 460 (1173)
.
T Consensus 318 ~ 318 (334)
T d1dcea1 318 S 318 (334)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.70 E-value=5e-16 Score=167.76 Aligned_cols=154 Identities=16% Similarity=0.018 Sum_probs=111.4
Q ss_pred HHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHH
Q 045024 39 KEKAAEHFVIAAKLN----PQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVV 114 (1173)
Q Consensus 39 ~~~A~~~~~~al~~~----p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~~g~~~~A~~~ 114 (1173)
.+.|+..+++++... |..+.+++.+|.+|.. .|++++|+..|+++++++|+++.++..+|.++...|++++|+..
T Consensus 15 ~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~-~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~ 93 (259)
T d1xnfa_ 15 QEVILARMEQILASRALTDDERAQLLYERGVLYDS-LGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEA 93 (259)
T ss_dssp HHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHH-CCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhh
Confidence 456666666666532 2345677778888888 88888888888888888888888877788888888888888888
Q ss_pred HHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 045024 115 CREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTS 193 (1173)
Q Consensus 115 ~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 193 (1173)
|+++++.+|+++.++..+|.++..+|++++|+..|+++++.+|.+......++..+...+..+.+...........+..
T Consensus 94 ~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (259)
T d1xnfa_ 94 FDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQ 172 (259)
T ss_dssp HHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCS
T ss_pred hhHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccchhh
Confidence 8888777777777777777777777777777777777777777777777777777766666555555555544444433
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.63 E-value=2.1e-14 Score=161.10 Aligned_cols=285 Identities=12% Similarity=0.042 Sum_probs=163.9
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHH
Q 045024 95 GEALCELLEHGGKESLEVVVCREASDKSPRA-----FWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPT------SPHLW 163 (1173)
Q Consensus 95 ~~~La~~~~~~g~~~~A~~~~~~al~~~p~~-----~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~------~~~~~ 163 (1173)
....|.++...|++++|+..++++++..|++ ..++..+|.++...|++++|+..|++++...+. ....+
T Consensus 15 ~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 94 (366)
T d1hz4a_ 15 NALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSL 94 (366)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHH
Confidence 3334444444444444444444444444432 234455566666666666666666665554321 13345
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCC--------ChHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCHHHHHHHH
Q 045024 164 EALGLAYHRLGMFSAAIKSYGRAIELDDT--------SIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLA 235 (1173)
Q Consensus 164 ~~la~~~~~~g~~~~A~~~~~~al~~~p~--------~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la 235 (1173)
..++.++...|++..|...+.+++...+. ....+..+|.++...|+++.+...+++++...+...... ..
T Consensus 95 ~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~ 172 (366)
T d1hz4a_ 95 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQ--QL 172 (366)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGG--GH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhh--HH
Confidence 56666677777777777777766654211 123455677777777777777777777777655443221 12
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHhhhcCChHHHHHHhchHHHHHhhccchhhhhhchhhhhhhhhhhhHh
Q 045024 236 SGLLGLAKQCINLGAFRWGASLLEDACKVAEANTRLAGNMSCIWKLHGDIQLTYAKCFPWAEERQSLEFDVETFSASIVS 315 (1173)
Q Consensus 236 ~~~~~l~~~~~a~g~~~~A~~~l~~Al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 315 (1173)
..+...+..+...+.+..+...+.++...........+.....+...+.....
T Consensus 173 ~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------- 225 (366)
T d1hz4a_ 173 QCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQM--------------------------- 225 (366)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHH---------------------------
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHh---------------------------
Confidence 23444455555566666666666666665544333222223333333333222
Q ss_pred hHhhhhHHHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHHhhHHHhhhhhhhhhHHHHHHHHHHHhhcCCCHHHHH
Q 045024 316 WKTTCLMAAISSKSSYQRALYLAPWQ----ANIYTDIAITSDLIYSLNEAYGHYQSAWHVSEKMALGALLLEGDNCQFWV 391 (1173)
Q Consensus 316 ~~~~~~~~~~~A~~~~~~al~l~p~~----~~~~~~la~~~~~~g~~~eA~~~~~~~~~~A~k~~~~al~~~p~~~~~~~ 391 (1173)
.+..++|...+++++...|.+ ...+..++.++...|++++|...+++ ++.
T Consensus 226 -----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~-----------al~---------- 279 (366)
T d1hz4a_ 226 -----TGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEE-----------LNE---------- 279 (366)
T ss_dssp -----TTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHH-----------HHH----------
T ss_pred -----cccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHH-----------HHH----------
Confidence 233567888888888777654 34566678888888888777443221 111
Q ss_pred HHHHhhcccHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 045024 392 TLGCLSNYNGLKQHALIRGLQLDVSLADAWAHIGKLYGEVGEKKLARQAFDSARSIDP 449 (1173)
Q Consensus 392 ~Lg~~~~~~~~a~~a~~kal~l~p~~~~a~~~Lg~~y~~~g~~e~A~~~f~~al~~~P 449 (1173)
..+.....|....++..+|.+|...|++++|++.|++++++.+
T Consensus 280 ---------------~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~~ 322 (366)
T d1hz4a_ 280 ---------------NARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLAN 322 (366)
T ss_dssp ---------------HHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred ---------------HHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhh
Confidence 0111233455667888899999999999999999998888643
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.61 E-value=1.8e-13 Score=153.30 Aligned_cols=284 Identities=15% Similarity=0.044 Sum_probs=225.5
Q ss_pred CCCCHHHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCC-
Q 045024 18 NPDDPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQN-----AVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDD- 91 (1173)
Q Consensus 18 ~P~~~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~-----~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~- 91 (1173)
++.+++....+|.++...|+ +++|+..|+++++..|++ ..++..+|.++.. .|++++|+..|+++++..|..
T Consensus 8 ~~~~ae~~~lrA~~~~~~g~-~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~-~g~~~~A~~~~~~a~~~~~~~~ 85 (366)
T d1hz4a_ 8 DTMHAEFNALRAQVAINDGN-PDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHC-KGELTRSLALMQQTEQMARQHD 85 (366)
T ss_dssp HHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHHHHTT
T ss_pred cchhHHHHHHHHHHHHHCCC-HHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHhhc
Confidence 34456778889999999988 999999999999999986 3578889999999 999999999999999875433
Q ss_pred -----HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCC--------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 045024 92 -----SVSGEALCELLEHGGKESLEVVVCREASDKSP--------RAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPT 158 (1173)
Q Consensus 92 -----~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p--------~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~ 158 (1173)
..++..++.++...|++..|...+.+++...+ .....+..+|.++...|+++.+...+++++...+.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~ 165 (366)
T d1hz4a_ 86 VWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSS 165 (366)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhh
Confidence 24478889999999999999999999876532 13456778999999999999999999999987653
Q ss_pred -----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-------ChHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCC
Q 045024 159 -----SPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDT-------SIFPLLESGNIFLMLGNFRKGVEQFQLALKISSE 226 (1173)
Q Consensus 159 -----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-------~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 226 (1173)
...++...+..+...|++.++...+.++....+. ...++..++.++...|++++|...+++++...|.
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 245 (366)
T d1hz4a_ 166 YQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFA 245 (366)
T ss_dssp SCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCT
T ss_pred hhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccc
Confidence 3567788899999999999999999998876443 2345678899999999999999999999988776
Q ss_pred CHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHhhhcCChHHHHHHhchHHHHHhhccchhhhhhchhhhh
Q 045024 227 NVSAHYGLASGLLGLAKQCINLGAFRWGASLLEDACKVAEANTRLAGNMSCIWKLHGDIQLTYAKCFPWAEERQSLEFDV 306 (1173)
Q Consensus 227 ~~~a~~~la~~~~~l~~~~~a~g~~~~A~~~l~~Al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~ 306 (1173)
+.... ......++..+...|++++|...+++++...... ...+....++..+|.++...++
T Consensus 246 ~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~la~~~~~~g~--------------- 306 (366)
T d1hz4a_ 246 NNHFL---QGQWRNIARAQILLGEFEPAEIVLEELNENARSL-RLMSDLNRNLLLLNQLYWQAGR--------------- 306 (366)
T ss_dssp TCGGG---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHTC---------------
T ss_pred cchHH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhc-ccChHHHHHHHHHHHHHHHCCC---------------
Confidence 54322 1233445666667778999999999988876653 3344555666666666655443
Q ss_pred hhhhhhhHhhHhhhhHHHHHHHHHHHHHHhcCC
Q 045024 307 ETFSASIVSWKTTCLMAAISSKSSYQRALYLAP 339 (1173)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p 339 (1173)
.++|+..+++++++.+
T Consensus 307 -----------------~~~A~~~l~~Al~l~~ 322 (366)
T d1hz4a_ 307 -----------------KSDAQRVLLDALKLAN 322 (366)
T ss_dssp -----------------HHHHHHHHHHHHHHHH
T ss_pred -----------------HHHHHHHHHHHHHHhh
Confidence 6789999999887654
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.50 E-value=2.3e-12 Score=142.84 Aligned_cols=222 Identities=11% Similarity=0.074 Sum_probs=187.9
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-------------CcHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHccC
Q 045024 7 LLLQLEDSLEANPDDPSLHLDLGLHLWENS-------------ESKEKAAEHFVIAAKL-NPQNAVAFRYLGHYYTRFSI 72 (1173)
Q Consensus 7 Ai~~l~~al~~~P~~~~~~~~lg~~~~~~~-------------~~~~~A~~~~~~al~~-~p~~~~a~~~lg~~~~~~~g 72 (1173)
++..|++++...|.++.+|+..+..+...+ ...++|...|+++++. .|.+...|...+.+... .|
T Consensus 35 v~~vyerAl~~~~~~~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~-~~ 113 (308)
T d2onda1 35 VMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES-RM 113 (308)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH-TT
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHcCchHHHHHHHhhcccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHh-cc
Confidence 567899999999999999988777553322 1257888999999964 78888899999999999 99
Q ss_pred CHHHHHHHHHHHHhhCCCCH-HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH-cCCHHHHHHHHH
Q 045024 73 DTQRAIKCYQRAVSLSPDDS-VSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLH-HKKWSEAVQSLQ 150 (1173)
Q Consensus 73 ~~~eA~~~~~~al~~~p~~~-~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~-~g~~~~A~~~l~ 150 (1173)
++++|...|+++++..|.+. .+|..++......|+++.|+.+|+++++..|.+...+...+..... .|+.+.|..+|+
T Consensus 114 ~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e 193 (308)
T d2onda1 114 KYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFE 193 (308)
T ss_dssp CHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhccCHHHHHHHHH
Confidence 99999999999999988775 4688899999999999999999999999999988888888876544 588999999999
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh----HHHHHHHHHHHHcCChHHHHHHHHHHHhhcCC
Q 045024 151 HAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSI----FPLLESGNIFLMLGNFRKGVEQFQLALKISSE 226 (1173)
Q Consensus 151 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~----~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 226 (1173)
+++..+|+++..|...+..+...|+++.|...|++++...|.++ ..|..........|+.+.+...++++.+..|+
T Consensus 194 ~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~~ 273 (308)
T d2onda1 194 LGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFRE 273 (308)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTT
T ss_pred HHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcc
Confidence 99999999999999999999999999999999999999876543 46777777777889999999999999888887
Q ss_pred CHH
Q 045024 227 NVS 229 (1173)
Q Consensus 227 ~~~ 229 (1173)
...
T Consensus 274 ~~~ 276 (308)
T d2onda1 274 EYE 276 (308)
T ss_dssp TTS
T ss_pred ccc
Confidence 643
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.45 E-value=4.9e-12 Score=140.07 Aligned_cols=226 Identities=11% Similarity=-0.031 Sum_probs=191.4
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc--------------CCHHHHHHHHHHHHhh-CCCCHHHHHHHHHHHH
Q 045024 39 KEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFS--------------IDTQRAIKCYQRAVSL-SPDDSVSGEALCELLE 103 (1173)
Q Consensus 39 ~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~--------------g~~~eA~~~~~~al~~-~p~~~~a~~~La~~~~ 103 (1173)
.+.+...|++|+...|.++..|+..+..... . +..++|...|+++++. .|.+...|..++.++.
T Consensus 32 ~~Rv~~vyerAl~~~~~~~~lW~~y~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~ 110 (308)
T d2onda1 32 TKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQ-SSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-cCchHHHHHHHhhcccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 4567889999999999999999998876644 3 3468899999999975 7888899999999999
Q ss_pred HCCCHHHHHHHHHHHHhhCCCcH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCHHHHHH
Q 045024 104 HGGKESLEVVVCREASDKSPRAF-WAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHR-LGMFSAAIK 181 (1173)
Q Consensus 104 ~~g~~~~A~~~~~~al~~~p~~~-~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~-~g~~~~A~~ 181 (1173)
..|+++.|...|+++++..|.+. .+|...+....+.|+++.|...|+++++..|.+...+...+..... .|+.+.|..
T Consensus 111 ~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~~~~~~~~~a~~e~~~~~~~~~a~~ 190 (308)
T d2onda1 111 SRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFK 190 (308)
T ss_dssp HTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHH
T ss_pred hcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhccCHHHHHH
Confidence 99999999999999999999764 5789999999999999999999999999999999999998887554 689999999
Q ss_pred HHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHH
Q 045024 182 SYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLASGLLGLAKQCINLGAFRWGASLLEDA 261 (1173)
Q Consensus 182 ~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~l~~~~~a~g~~~~A~~~l~~A 261 (1173)
.|+++++..|+++..+..++..+...|+++.|...|++++...|.++.-... ++....+.....|+.+.+..+++++
T Consensus 191 i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~---iw~~~~~fE~~~G~~~~~~~~~~r~ 267 (308)
T d2onda1 191 IFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGE---IWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHH---HHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHH---HHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999988766542111 2223333444567788887777777
Q ss_pred HHHHHHH
Q 045024 262 CKVAEAN 268 (1173)
Q Consensus 262 l~~~~~~ 268 (1173)
.+.++..
T Consensus 268 ~~~~~~~ 274 (308)
T d2onda1 268 FTAFREE 274 (308)
T ss_dssp HHHTTTT
T ss_pred HHHCccc
Confidence 7766544
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.44 E-value=2.9e-14 Score=169.39 Aligned_cols=227 Identities=12% Similarity=-0.019 Sum_probs=164.9
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 045024 6 ALLLQLEDSLEANPDDPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAV 85 (1173)
Q Consensus 6 aAi~~l~~al~~~P~~~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al 85 (1173)
+|++.|+++++++|+.+++++.+|.++..+++ +++| |++++..+|+.+..+...+... + ..+..+++.+++..
T Consensus 4 eA~q~~~qA~~l~p~~a~a~~~la~~~~~~~~-l~ea---ye~~i~~dp~~a~~~~~e~~Lw-~--~~y~~~ie~~r~~~ 76 (497)
T d1ya0a1 4 QSAQYLRQAEVLKADMTDSKLGPAEVWTSRQA-LQDL---YQKMLVTDLEYALDKKVEQDLW-N--HAFKNQITTLQGQA 76 (497)
T ss_dssp HHHHHHHHHHHHHGGGTCSSSCSSSSHHHHHH-HHHH---HHHHHHHCHHHHHHHTHHHHHH-H--HHTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHhhHHHHHHHHch-HHHH---HHHHHHcChhhHHHHhHHHHHH-H--HHHHHHHHHHHHhc
Confidence 36999999999999999999999999999987 8876 8999999998777654333322 2 33566888888887
Q ss_pred hhC--CCCHHH-HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 045024 86 SLS--PDDSVS-GEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHL 162 (1173)
Q Consensus 86 ~~~--p~~~~a-~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~ 162 (1173)
+.. ++.... ...++.+....+.|+.|+..+.+++..+|++...+..+|..+...|++++|+..+++++..+| ..+
T Consensus 77 k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~--~~~ 154 (497)
T d1ya0a1 77 KNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYIC--QHC 154 (497)
T ss_dssp SCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC-------------------------------CCHHHHHHH--HHH
T ss_pred ccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCCH--HHH
Confidence 654 232222 334566677788999999999999999999999999999999999999999999999998776 468
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHH
Q 045024 163 WEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLASGLLGL 241 (1173)
Q Consensus 163 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~l 241 (1173)
+..+|.++...|++++|+.+|+++++++|++..+++.+|.++...|++.+|+.+|.+++..+|..+.++.+++.++...
T Consensus 155 ~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~~~ 233 (497)
T d1ya0a1 155 LVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKA 233 (497)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHh
Confidence 8899999999999999999999999999999999999999999999999999999999999999999999888877553
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.43 E-value=1.6e-12 Score=121.49 Aligned_cols=109 Identities=18% Similarity=0.228 Sum_probs=81.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcC
Q 045024 129 FRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLG 208 (1173)
Q Consensus 129 ~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g 208 (1173)
+...|..++..|++++|+..|+++++.+|+++.++..+|.+|...|++++|+..++++++++|+++.+++.+|.++..+|
T Consensus 6 l~~~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~ 85 (117)
T d1elwa_ 6 LKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLN 85 (117)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHcc
Confidence 44567777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred ChHHHHHHHHHHHhhcCCCHHHHHHHHHH
Q 045024 209 NFRKGVEQFQLALKISSENVSAHYGLASG 237 (1173)
Q Consensus 209 ~~~~A~~~~~~al~~~p~~~~a~~~la~~ 237 (1173)
++++|+..|+++++.+|+++.++..++.+
T Consensus 86 ~~~~A~~~~~~a~~~~p~~~~~~~~l~~l 114 (117)
T d1elwa_ 86 RFEEAKRTYEEGLKHEANNPQLKEGLQNM 114 (117)
T ss_dssp CHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 77777777777777777777666655543
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.41 E-value=1.8e-12 Score=121.06 Aligned_cols=102 Identities=18% Similarity=0.218 Sum_probs=40.1
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHH
Q 045024 64 GHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWS 143 (1173)
Q Consensus 64 g~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~ 143 (1173)
|..++. .|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+.++++.+|+++.+++.+|.++..+|+++
T Consensus 10 g~~~~~-~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~ 88 (117)
T d1elwa_ 10 GNKALS-VGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFE 88 (117)
T ss_dssp HHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHH-cCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccCHH
Confidence 333333 3444444444444433333333333333333333333333333333333333333333333333333333333
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHH
Q 045024 144 EAVQSLQHAIRGYPTSPHLWEAL 166 (1173)
Q Consensus 144 ~A~~~l~~al~~~p~~~~~~~~l 166 (1173)
+|+..|+++++.+|+++.++..+
T Consensus 89 ~A~~~~~~a~~~~p~~~~~~~~l 111 (117)
T d1elwa_ 89 EAKRTYEEGLKHEANNPQLKEGL 111 (117)
T ss_dssp HHHHHHHHHHTTCTTCHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHH
Confidence 33333333333333333333333
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.39 E-value=9.3e-12 Score=123.21 Aligned_cols=113 Identities=20% Similarity=0.274 Sum_probs=101.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 045024 127 WAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLM 206 (1173)
Q Consensus 127 ~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~ 206 (1173)
..+...|..+++.|+|++|+..|+++++.+|+++.+|..+|.++...|++++|+..|+++++++|+++.++..+|.++..
T Consensus 11 ~~l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~ 90 (159)
T d1a17a_ 11 EELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMA 90 (159)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHH
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCChHHHHHHHHHHHhhcCCCHHHHHHHHHHHH
Q 045024 207 LGNFRKGVEQFQLALKISSENVSAHYGLASGLL 239 (1173)
Q Consensus 207 ~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~ 239 (1173)
+|++++|+..|++++..+|+++.++..++.+..
T Consensus 91 ~g~~~eA~~~~~~a~~~~p~~~~~~~~l~~~~~ 123 (159)
T d1a17a_ 91 LGKFRAALRDYETVVKVKPHDKDAKMKYQECNK 123 (159)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 999999999999999999999888776665543
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.38 E-value=2.6e-12 Score=141.03 Aligned_cols=202 Identities=12% Similarity=0.061 Sum_probs=153.1
Q ss_pred HHHHHHHHHHHHHccCcHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCC----
Q 045024 22 PSLHLDLGLHLWENSESKEKAAEHFVIAAKLN------PQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDD---- 91 (1173)
Q Consensus 22 ~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~------p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~---- 91 (1173)
.+.|...|.+|...++ |++|+..|.+++++. +..+.++..+|.+|.. .|++++|+..|++++++.+..
T Consensus 37 a~~y~~aa~~y~~~~~-~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~-~~~~~~A~~~~~~a~~~~~~~~~~~ 114 (290)
T d1qqea_ 37 ADLCVQAATIYRLRKE-LNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKS-GGNSVNAVDSLENAIQIFTHRGQFR 114 (290)
T ss_dssp HHHHHHHHHHHHHTTC-THHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHCcC-HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH-hCCcHHHHHHHHHhhHHhhhcccch
Confidence 3457778888888887 999999999998753 2234678899999999 999999999999998876544
Q ss_pred --HHHHHHHHHHHHH-CCCHHHHHHHHHHHHhhCCC------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH--
Q 045024 92 --SVSGEALCELLEH-GGKESLEVVVCREASDKSPR------AFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSP-- 160 (1173)
Q Consensus 92 --~~a~~~La~~~~~-~g~~~~A~~~~~~al~~~p~------~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~-- 160 (1173)
..++..+|.++.. .|++++|+..|++++++.+. ...++..+|.++..+|+|++|+..|++++...|.+.
T Consensus 115 ~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~ 194 (290)
T d1qqea_ 115 RGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLS 194 (290)
T ss_dssp HHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTT
T ss_pred hHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhh
Confidence 3457788888855 59999999999999776332 245688899999999999999999999998877553
Q ss_pred -----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH-----HHHHHHHHHHH--cCChHHHHHHHHHHHhhcC
Q 045024 161 -----HLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIF-----PLLESGNIFLM--LGNFRKGVEQFQLALKISS 225 (1173)
Q Consensus 161 -----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~-----a~~~la~~~~~--~g~~~~A~~~~~~al~~~p 225 (1173)
..+...|.++...|+++.|...++++++.+|.... ....++.++.. .+.+++|+..|+++.+++|
T Consensus 195 ~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~~~lD~ 271 (290)
T d1qqea_ 195 QWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDK 271 (290)
T ss_dssp GGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCH
T ss_pred hhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCH
Confidence 45677888888999999999999999988876443 23444455444 3568889988887766654
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.37 E-value=1.2e-11 Score=126.39 Aligned_cols=142 Identities=14% Similarity=0.105 Sum_probs=65.8
Q ss_pred HHHHHHHHccCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCC
Q 045024 27 DLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGG 106 (1173)
Q Consensus 27 ~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~~g 106 (1173)
..|..+...++ |++|+..|.+ ..|.++.+++.+|.+|.. .|++++|+..|+++++++|+++.++..+|.++..+|
T Consensus 10 ~~g~~~~~~~d-~~~Al~~~~~---i~~~~~~~~~nlG~~~~~-~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g 84 (192)
T d1hh8a_ 10 NEGVLAADKKD-WKGALDAFSA---VQDPHSRICFNIGCMYTI-LKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTE 84 (192)
T ss_dssp HHHHHHHHTTC-HHHHHHHHHT---SSSCCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCC-HHHHHHHHHh---cCCCCHHHHHHHHHHHHH-cCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhhc
Confidence 34444444444 4555444443 233344444445555544 555555555555555555544444444444444444
Q ss_pred CHHHHHHHHHHHHhhCCCcHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 045024 107 KESLEVVVCREASDKSPRAFWA-FRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGR 185 (1173)
Q Consensus 107 ~~~~A~~~~~~al~~~p~~~~a-~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 185 (1173)
++++|+..|++++...|.+... +..+|. ........+++.+|.++...|++++|++.+++
T Consensus 85 ~~~~A~~~~~kAl~~~~~n~~~~~~~~~~-------------------~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~ 145 (192)
T d1hh8a_ 85 KYDLAIKDLKEALIQLRGNQLIDYKILGL-------------------QFKLFACEVLYNIAFMYAKKEEWKKAEEQLAL 145 (192)
T ss_dssp CHHHHHHHHHHHHHTTTTCSEEECGGGTB-------------------CCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCccCchHHHHHhhh-------------------hcccchHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 4444444444444433322100 000000 00001134556666666666666666666666
Q ss_pred HHHhCCC
Q 045024 186 AIELDDT 192 (1173)
Q Consensus 186 al~~~p~ 192 (1173)
++++.|+
T Consensus 146 A~~~~~~ 152 (192)
T d1hh8a_ 146 ATSMKSE 152 (192)
T ss_dssp HHTTCCS
T ss_pred HHhcCCC
Confidence 6666655
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.37 E-value=7.3e-12 Score=123.98 Aligned_cols=109 Identities=13% Similarity=0.133 Sum_probs=58.6
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHc
Q 045024 60 FRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHH 139 (1173)
Q Consensus 60 ~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~ 139 (1173)
+...|..++. .|+|++|+..|+++++++|++..++..+|.++...|++++|+..|+++++.+|+++.++..+|.++...
T Consensus 13 l~~~gn~~~~-~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~ 91 (159)
T d1a17a_ 13 LKTQANDYFK-AKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMAL 91 (159)
T ss_dssp HHHHHHHHHH-TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHH-cCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHc
Confidence 3344555555 555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 045024 140 KKWSEAVQSLQHAIRGYPTSPHLWEALGLA 169 (1173)
Q Consensus 140 g~~~~A~~~l~~al~~~p~~~~~~~~la~~ 169 (1173)
|++++|+..+++++.++|+++.++..++.+
T Consensus 92 g~~~eA~~~~~~a~~~~p~~~~~~~~l~~~ 121 (159)
T d1a17a_ 92 GKFRAALRDYETVVKVKPHDKDAKMKYQEC 121 (159)
T ss_dssp TCHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 555555555555555555555554444433
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.36 E-value=1.4e-11 Score=126.05 Aligned_cols=129 Identities=15% Similarity=0.128 Sum_probs=98.5
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 045024 6 ALLLQLEDSLEANPDDPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAV 85 (1173)
Q Consensus 6 aAi~~l~~al~~~P~~~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al 85 (1173)
.|++.|.+ ..|.++.+++.+|.+|+..|+ +++|+..|+++++++|+++.+|+.+|.++.. +|++++|+..|++++
T Consensus 23 ~Al~~~~~---i~~~~~~~~~nlG~~~~~~g~-~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~-~g~~~~A~~~~~kAl 97 (192)
T d1hh8a_ 23 GALDAFSA---VQDPHSRICFNIGCMYTILKN-MTEAEKAFTRSINRDKHLAVAYFQRGMLYYQ-TEKYDLAIKDLKEAL 97 (192)
T ss_dssp HHHHHHHT---SSSCCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHh---cCCCCHHHHHHHHHHHHHcCC-chhHHHHHHHHHHHhhhhhhhHHHHHHHHHh-hccHHHHHHHHHHHH
Confidence 34777765 466788999999999999998 9999999999999999999999999999999 999999999999999
Q ss_pred hhCCCCHHH-HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 045024 86 SLSPDDSVS-GEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPT 158 (1173)
Q Consensus 86 ~~~p~~~~a-~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~ 158 (1173)
...|.+... +..++ +........+++.+|.++...|++++|++.+++++...|.
T Consensus 98 ~~~~~n~~~~~~~~~-------------------~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~ 152 (192)
T d1hh8a_ 98 IQLRGNQLIDYKILG-------------------LQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE 152 (192)
T ss_dssp HTTTTCSEEECGGGT-------------------BCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred HhCccCchHHHHHhh-------------------hhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 887665321 00000 0001112345666777777777777777777777776665
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.35 E-value=3e-13 Score=160.48 Aligned_cols=230 Identities=11% Similarity=0.010 Sum_probs=162.4
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q 045024 40 EKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREAS 119 (1173)
Q Consensus 40 ~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al 119 (1173)
-+|+++|++|+++.|+.++++..+|.++.. .|++++| |++++..+|+....+...+.+. ...+..+++.+++..
T Consensus 3 ~eA~q~~~qA~~l~p~~a~a~~~la~~~~~-~~~l~ea---ye~~i~~dp~~a~~~~~e~~Lw--~~~y~~~ie~~r~~~ 76 (497)
T d1ya0a1 3 LQSAQYLRQAEVLKADMTDSKLGPAEVWTS-RQALQDL---YQKMLVTDLEYALDKKVEQDLW--NHAFKNQITTLQGQA 76 (497)
T ss_dssp HHHHHHHHHHHHHHGGGTCSSSCSSSSHHH-HHHHHHH---HHHHHHHCHHHHHHHTHHHHHH--HHHTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHhhHHHHHHH-HchHHHH---HHHHHHcChhhHHHHhHHHHHH--HHHHHHHHHHHHHhc
Confidence 479999999999999999999999999999 9999876 8999999998766654333322 223667888888877
Q ss_pred hhCC--Cc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHH
Q 045024 120 DKSP--RA-FWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFP 196 (1173)
Q Consensus 120 ~~~p--~~-~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a 196 (1173)
+... +. ......++.+....+.|+.|+..+++++.++|.+...+..+|..+...|++++|+..+++++..+| ..+
T Consensus 77 k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~--~~~ 154 (497)
T d1ya0a1 77 KNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYIC--QHC 154 (497)
T ss_dssp SCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC-------------------------------CCHHHHHHH--HHH
T ss_pred ccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCCH--HHH
Confidence 6543 22 222334566777789999999999999999999999999999999999999999999999998776 468
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHhhhcCChH
Q 045024 197 LLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLASGLLGLAKQCINLGAFRWGASLLEDACKVAEANTRLAGNMS 276 (1173)
Q Consensus 197 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~l~~~~~a~g~~~~A~~~l~~Al~~~~~~~~~~~~~~ 276 (1173)
+..+|.++...|++++|+.+|+++++++|+++.+++.+|.++...|+
T Consensus 155 ~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~--------------------------------- 201 (497)
T d1ya0a1 155 LVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGD--------------------------------- 201 (497)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTC---------------------------------
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHcCC---------------------------------
Confidence 88999999999999999999999999999999999999998887666
Q ss_pred HHHHHhchHHHHHhhccchhhhhhchhhhhhhhhhhhHhhHhhhhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHh
Q 045024 277 CIWKLHGDIQLTYAKCFPWAEERQSLEFDVETFSASIVSWKTTCLMAAISSKSSYQRALYLAPWQANIYTDIAITSDLIY 356 (1173)
Q Consensus 277 ~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g 356 (1173)
..+|+..|.+++...|..+.++.+++.++....
T Consensus 202 -----------------------------------------------~~~A~~~y~ral~~~~~~~~a~~nL~~~~~~~~ 234 (497)
T d1ya0a1 202 -----------------------------------------------HLTTIFYYCRSIAVKFPFPAASTNLQKALSKAL 234 (497)
T ss_dssp -----------------------------------------------HHHHHHHHHHHHSSSBCCHHHHHHHHHHHHHHT
T ss_pred -----------------------------------------------HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhh
Confidence 235788889999999999999999998876544
Q ss_pred h
Q 045024 357 S 357 (1173)
Q Consensus 357 ~ 357 (1173)
+
T Consensus 235 ~ 235 (497)
T d1ya0a1 235 E 235 (497)
T ss_dssp T
T ss_pred h
Confidence 3
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.33 E-value=8.6e-12 Score=136.80 Aligned_cols=177 Identities=15% Similarity=0.059 Sum_probs=144.2
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCC------CCHHHHHHHHHHHHHCCCHHHHH
Q 045024 39 KEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSP------DDSVSGEALCELLEHGGKESLEV 112 (1173)
Q Consensus 39 ~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p------~~~~a~~~La~~~~~~g~~~~A~ 112 (1173)
|++|..+|.++ |.+|.. .|++++|+.+|.+++++.+ .....+..+|.+|...|++++|+
T Consensus 33 ~~~Aa~~y~~a--------------a~~y~~-~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~ 97 (290)
T d1qqea_ 33 FEEAADLCVQA--------------ATIYRL-RKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAV 97 (290)
T ss_dssp HHHHHHHHHHH--------------HHHHHH-TTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHH--------------HHHHHH-CcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 67777776654 888999 9999999999999998732 22356899999999999999999
Q ss_pred HHHHHHHhhCCCc------HHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCHHHH
Q 045024 113 VVCREASDKSPRA------FWAFRRLGYLQLH-HKKWSEAVQSLQHAIRGYPT------SPHLWEALGLAYHRLGMFSAA 179 (1173)
Q Consensus 113 ~~~~~al~~~p~~------~~a~~~la~~~~~-~g~~~~A~~~l~~al~~~p~------~~~~~~~la~~~~~~g~~~~A 179 (1173)
..+++++++.+.. ..++..+|.++.. .|++++|+..|++++++.+. ...++..+|.++...|++++|
T Consensus 98 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A 177 (290)
T d1qqea_ 98 DSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEA 177 (290)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHhhHHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHH
Confidence 9999998875543 5678888988866 69999999999999887442 245688899999999999999
Q ss_pred HHHHHHHHHhCCCCh-------HHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCHHH
Q 045024 180 IKSYGRAIELDDTSI-------FPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSA 230 (1173)
Q Consensus 180 ~~~~~~al~~~p~~~-------~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a 230 (1173)
+..|++++...+... ..+...+.++...|+++.|...++++.+.+|.....
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~s 235 (290)
T d1qqea_ 178 SDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADS 235 (290)
T ss_dssp HHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-------
T ss_pred HHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccch
Confidence 999999999887653 345778889999999999999999999999876543
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.28 E-value=8.9e-12 Score=128.15 Aligned_cols=105 Identities=20% Similarity=0.269 Sum_probs=86.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 045024 126 FWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFL 205 (1173)
Q Consensus 126 ~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~ 205 (1173)
...+...|..++..|+|++|+..|++++.++|.++.+|.++|.+|...|++++|+..|+++++++|+++.+++.+|.+|.
T Consensus 4 a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~~~ 83 (201)
T d2c2la1 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQL 83 (201)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 44566778888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HcCChHHHHHHHHHHHhhcCCCHHH
Q 045024 206 MLGNFRKGVEQFQLALKISSENVSA 230 (1173)
Q Consensus 206 ~~g~~~~A~~~~~~al~~~p~~~~a 230 (1173)
.+|++++|+..|+++++++|++...
T Consensus 84 ~l~~~~~A~~~~~~al~l~p~~~~~ 108 (201)
T d2c2la1 84 EMESYDEAIANLQRAYSLAKEQRLN 108 (201)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCC
T ss_pred HCCCHHHHHHHHHHHHHhCcccHHH
Confidence 8888888888888888877765443
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.25 E-value=2e-11 Score=125.48 Aligned_cols=102 Identities=22% Similarity=0.187 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q 045024 57 AVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQ 136 (1173)
Q Consensus 57 ~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~ 136 (1173)
+..+...|..++. .|+|++|+..|+++++++|+++.++..+|.+|...|++++|+..|+++++++|+++.+|+.+|.++
T Consensus 4 a~~l~~~Gn~~~~-~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~~ 82 (201)
T d2c2la1 4 AQELKEQGNRLFV-GRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ 82 (201)
T ss_dssp HHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 3445556666666 666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCC
Q 045024 137 LHHKKWSEAVQSLQHAIRGYPTS 159 (1173)
Q Consensus 137 ~~~g~~~~A~~~l~~al~~~p~~ 159 (1173)
..+|++++|+..|++++.++|++
T Consensus 83 ~~l~~~~~A~~~~~~al~l~p~~ 105 (201)
T d2c2la1 83 LEMESYDEAIANLQRAYSLAKEQ 105 (201)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHCCCHHHHHHHHHHHHHhCccc
Confidence 66666666666666666655543
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.20 E-value=4.4e-10 Score=112.13 Aligned_cols=115 Identities=23% Similarity=0.282 Sum_probs=90.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 045024 129 FRRLGYLQLHHKKWSEAVQSLQHAIRGYPTS---------------PHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTS 193 (1173)
Q Consensus 129 ~~~la~~~~~~g~~~~A~~~l~~al~~~p~~---------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 193 (1173)
+...|..++..|+|++|+..|++++...|.. ..++.++|.+|.+.|++++|+..++++++++|++
T Consensus 16 l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~ 95 (170)
T d1p5qa1 16 VKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNN 95 (170)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhccccc
Confidence 3444555555555555555555555544422 2456788999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHH
Q 045024 194 IFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLASGLLGLAK 243 (1173)
Q Consensus 194 ~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~l~~ 243 (1173)
+.+++.+|.++..+|++++|+..|+++++++|+++.+...++.+......
T Consensus 96 ~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~ 145 (170)
T d1p5qa1 96 EKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRR 145 (170)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999888888887766555
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.18 E-value=2.5e-10 Score=114.01 Aligned_cols=145 Identities=13% Similarity=0.087 Sum_probs=102.5
Q ss_pred HHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q 045024 57 AVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQ 136 (1173)
Q Consensus 57 ~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~ 136 (1173)
+..+...|..++. .|++++|+..|++++...|........ .......+ ...++..+|.+|
T Consensus 13 a~~l~~~G~~~~~-~~~~~~Ai~~y~~al~~~~~~~~~~~~----------~~~~~~~~---------~~~~~~nla~~y 72 (170)
T d1p5qa1 13 STIVKERGTVYFK-EGKYKQALLQYKKIVSWLEYESSFSNE----------EAQKAQAL---------RLASHLNLAMCH 72 (170)
T ss_dssp HHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHTTTCCCCCSH----------HHHHHHHH---------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHhhhccccchH----------HHhhhchh---------HHHHHHHHHHHH
Confidence 4456678888888 888888888888888877654321100 00000000 123566788888
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHH-H
Q 045024 137 LHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGV-E 215 (1173)
Q Consensus 137 ~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~-~ 215 (1173)
..+|++++|+..+++++.++|+++.+++.+|.+|..+|++++|+..|+++++++|+++.+...++.+....++..+.. .
T Consensus 73 ~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~e~~ 152 (170)
T d1p5qa1 73 LKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKK 152 (170)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888888888888888888888888888888888888888888888888888888877766665443 2
Q ss_pred HHHHHH
Q 045024 216 QFQLAL 221 (1173)
Q Consensus 216 ~~~~al 221 (1173)
.|.+++
T Consensus 153 ~~~~~f 158 (170)
T d1p5qa1 153 LYANMF 158 (170)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 344443
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=99.15 E-value=1.3e-10 Score=107.20 Aligned_cols=93 Identities=18% Similarity=0.115 Sum_probs=58.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcC
Q 045024 129 FRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLG 208 (1173)
Q Consensus 129 ~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g 208 (1173)
.+.+|..+.+.|++++|+..|++++..+|+++.++..+|.++...|++++|+..|+++++++|++..++..+|.+|...|
T Consensus 19 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g 98 (112)
T d1hxia_ 19 PMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEH 98 (112)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHCC
Confidence 34556666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred ChHHHHHHHHHHH
Q 045024 209 NFRKGVEQFQLAL 221 (1173)
Q Consensus 209 ~~~~A~~~~~~al 221 (1173)
++++|++.+++.+
T Consensus 99 ~~~~A~~~l~~~l 111 (112)
T d1hxia_ 99 NANAALASLRAWL 111 (112)
T ss_dssp HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHh
Confidence 6666666666543
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=99.14 E-value=5.7e-10 Score=109.18 Aligned_cols=83 Identities=14% Similarity=0.212 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCHHHHHHHHHHHHH
Q 045024 161 HLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLASGLLG 240 (1173)
Q Consensus 161 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~ 240 (1173)
.++.++|.+|.++|++++|+..++++++++|.++.+++.+|.++..+|++++|+..|+++++++|++..+...+..+...
T Consensus 68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~k 147 (153)
T d2fbna1 68 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNK 147 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 46778999999999999999999999999999999999999999999999999999999999999999888777776655
Q ss_pred HHH
Q 045024 241 LAK 243 (1173)
Q Consensus 241 l~~ 243 (1173)
+.+
T Consensus 148 l~~ 150 (153)
T d2fbna1 148 LKE 150 (153)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=99.13 E-value=1.5e-10 Score=106.83 Aligned_cols=92 Identities=21% Similarity=0.209 Sum_probs=54.7
Q ss_pred HHHHHHHHHHccCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 045024 25 HLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEH 104 (1173)
Q Consensus 25 ~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~ 104 (1173)
.+.+|..++..|+ +++|+..|+++++.+|+++.+|..+|.++.. .|++++|+..|+++++++|++..++..+|.+|..
T Consensus 19 ~~~~g~~~~~~g~-~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~-~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~ 96 (112)
T d1hxia_ 19 PMEEGLSMLKLAN-LAEAALAFEAVCQKEPEREEAWRSLGLTQAE-NEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 96 (112)
T ss_dssp HHHHHHHHHHTTC-HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhh-hHHHHHHHhhhcccccccchhhhhhhhhhhh-hhhHHHhhcccccccccccccccchHHHHHHHHH
Confidence 3455555555554 5666666666666666666666666666666 6666666666666666666666666666666666
Q ss_pred CCCHHHHHHHHHHH
Q 045024 105 GGKESLEVVVCREA 118 (1173)
Q Consensus 105 ~g~~~~A~~~~~~a 118 (1173)
.|++++|++.+++.
T Consensus 97 ~g~~~~A~~~l~~~ 110 (112)
T d1hxia_ 97 EHNANAALASLRAW 110 (112)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH
Confidence 66666665555554
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.11 E-value=2.8e-10 Score=113.57 Aligned_cols=133 Identities=16% Similarity=0.196 Sum_probs=79.3
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHc
Q 045024 60 FRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHH 139 (1173)
Q Consensus 60 ~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~ 139 (1173)
+...|..+.. .|++++|+..|+++++..+.. .+...........|....++..+|.++..+
T Consensus 30 ~~~~~~~~~~-~~~y~~Ai~~y~~al~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~nla~~~~~~ 90 (169)
T d1ihga1 30 LKNIGNTFFK-SQNWEMAIKKYTKVLRYVEGS------------------RAAAEDADGAKLQPVALSCVLNIGACKLKM 90 (169)
T ss_dssp HHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHH------------------HHHSCHHHHGGGHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHH-cCCHHHHHHHHHHHHHhhhhh------------------hhhhhhHHHHHhChhhHHHHHHHHHHHHhh
Confidence 4456777777 777777777777776542211 111111222333444555666666666666
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChH
Q 045024 140 KKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFR 211 (1173)
Q Consensus 140 g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~ 211 (1173)
|++++|+..++++++++|+++.+++.+|.+|..+|++++|+..|+++++++|++..+...++.+........
T Consensus 91 ~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~~l~~~~ 162 (169)
T d1ihga1 91 SDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQK 162 (169)
T ss_dssp TCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHH
T ss_pred cccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Confidence 666666666666666666666666666666666666666666666666666666666666665555444333
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.11 E-value=2.5e-10 Score=106.69 Aligned_cols=110 Identities=8% Similarity=-0.130 Sum_probs=83.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCC--hHHHHHHHHHHH
Q 045024 131 RLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLG---MFSAAIKSYGRAIELDDTS--IFPLLESGNIFL 205 (1173)
Q Consensus 131 ~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~p~~--~~a~~~la~~~~ 205 (1173)
.++..+...+++++|++.|++++..+|+++.+++++|.++++.+ ++++|+..|++++..+|.+ ..+++.+|.+|.
T Consensus 4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~ 83 (122)
T d1nzna_ 4 AVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNY 83 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHH
Confidence 45666777788888888888888888888888888888887644 4456888888888777654 457788888888
Q ss_pred HcCChHHHHHHHHHHHhhcCCCHHHHHHHHHHHHH
Q 045024 206 MLGNFRKGVEQFQLALKISSENVSAHYGLASGLLG 240 (1173)
Q Consensus 206 ~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~ 240 (1173)
.+|++++|+.+|+++++++|++..+...++.+...
T Consensus 84 ~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I~~~ 118 (122)
T d1nzna_ 84 RLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKA 118 (122)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHhhhHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH
Confidence 88888888888888888888888777666555444
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=99.11 E-value=1.5e-09 Score=107.92 Aligned_cols=115 Identities=17% Similarity=0.262 Sum_probs=86.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 045024 129 FRRLGYLQLHHKKWSEAVQSLQHAIRGYPT---------------SPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTS 193 (1173)
Q Consensus 129 ~~~la~~~~~~g~~~~A~~~l~~al~~~p~---------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 193 (1173)
+...|..++..|+|.+|+..|++++...|. ...++.++|.+|..+|++++|+..++++++++|++
T Consensus 18 ~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~ 97 (168)
T d1kt1a1 18 VKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSAN 97 (168)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhcccch
Confidence 334445555555555555555554443221 13456788999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHH
Q 045024 194 IFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLASGLLGLAK 243 (1173)
Q Consensus 194 ~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~l~~ 243 (1173)
+.+++.+|.++..+|++++|+..|+++++++|+++.+...++.+....+.
T Consensus 98 ~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~ 147 (168)
T d1kt1a1 98 EKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKAKE 147 (168)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999998888777777666554
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=99.09 E-value=9.8e-10 Score=109.32 Aligned_cols=146 Identities=15% Similarity=0.093 Sum_probs=110.7
Q ss_pred HHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q 045024 57 AVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQ 136 (1173)
Q Consensus 57 ~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~ 136 (1173)
+..+...|..++. .|+|.+|+..|++++...|..... ..... ... .+....++.++|.+|
T Consensus 15 a~~~~e~G~~~~~-~~~~~~A~~~Y~~al~~~~~~~~~------------~~~~~-~~~------~~~~~~~~~Nla~~~ 74 (168)
T d1kt1a1 15 AAIVKEKGTVYFK-GGKYVQAVIQYGKIVSWLEMEYGL------------SEKES-KAS------ESFLLAAFLNLAMCY 74 (168)
T ss_dssp HHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHTTCCSC------------CHHHH-HHH------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHHhhcc------------chhhh-hhc------chhHHHHHHhHHHHH
Confidence 6677888999999 999999999999888765433211 00000 000 011234677889999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHH
Q 045024 137 LHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRK-GVE 215 (1173)
Q Consensus 137 ~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~-A~~ 215 (1173)
..+|++++|+..+++++.++|++..+++.+|.++..+|++++|+..|+++++++|++..+...++.+....+++.+ ...
T Consensus 75 ~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~e~~kk 154 (168)
T d1kt1a1 75 LKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKAKEHNERDRR 154 (168)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999998888888877766643 444
Q ss_pred HHHHHHh
Q 045024 216 QFQLALK 222 (1173)
Q Consensus 216 ~~~~al~ 222 (1173)
.|.++++
T Consensus 155 ~~~~~f~ 161 (168)
T d1kt1a1 155 TYANMFK 161 (168)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 5555444
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.08 E-value=4.2e-10 Score=106.45 Aligned_cols=103 Identities=17% Similarity=0.243 Sum_probs=96.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHH
Q 045024 162 LWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLASGLLGL 241 (1173)
Q Consensus 162 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~l 241 (1173)
.+..+|..++..|+|++|+.+|+++++++|+++.++.++|.+|..+|++++|+..++++++++|.++..+..++.++..+
T Consensus 6 ~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~l 85 (128)
T d1elra_ 6 KEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI 85 (128)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcHHHHHHHHHHHHHH
Q 045024 242 AKQCINLGAFRWGASLLEDACKV 264 (1173)
Q Consensus 242 ~~~~~a~g~~~~A~~~l~~Al~~ 264 (1173)
|..+...+++++|+..|++++..
T Consensus 86 g~~~~~~~~~~~A~~~~~kal~~ 108 (128)
T d1elra_ 86 GNSYFKEEKYKDAIHFYNKSLAE 108 (128)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHhc
Confidence 99999999999999988888753
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.07 E-value=8.3e-10 Score=110.00 Aligned_cols=131 Identities=11% Similarity=0.090 Sum_probs=102.4
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 045024 95 GEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLG 174 (1173)
Q Consensus 95 ~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g 174 (1173)
....|..+...|++.+|+..|.++++..+.. .+.....+....+|....++.++|.++.+.|
T Consensus 30 ~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~ 91 (169)
T d1ihga1 30 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGS------------------RAAAEDADGAKLQPVALSCVLNIGACKLKMS 91 (169)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH------------------HHHSCHHHHGGGHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhhhhh------------------hhhhhhHHHHHhChhhHHHHHHHHHHHHhhc
Confidence 4455666666777777777776665432111 1111112223445667788999999999999
Q ss_pred CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHH
Q 045024 175 MFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLASGLLGLAK 243 (1173)
Q Consensus 175 ~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~l~~ 243 (1173)
++++|+..|+++++++|+++.+++.+|.+|..+|++++|+..|+++++++|++..+...+..+...+..
T Consensus 92 ~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~~l~~ 160 (169)
T d1ihga1 92 DWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKA 160 (169)
T ss_dssp CHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred ccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999988888777766554
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.07 E-value=3.4e-10 Score=105.80 Aligned_cols=107 Identities=12% Similarity=-0.009 Sum_probs=60.2
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHhhCCCc--HHHHHHHHHHHH
Q 045024 63 LGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGG---KESLEVVVCREASDKSPRA--FWAFRRLGYLQL 137 (1173)
Q Consensus 63 lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~~g---~~~~A~~~~~~al~~~p~~--~~a~~~la~~~~ 137 (1173)
++..+.. .+++++|.+.|++++..+|+++.+++.+|.++...+ ++++|+..+++++..+|.+ ..+++.+|.+|.
T Consensus 5 l~n~~~~-~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~ 83 (122)
T d1nzna_ 5 VLNELVS-VEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNY 83 (122)
T ss_dssp HHHHHHH-HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHhcC-HHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHH
Confidence 3444455 556666666666666666666666666666655433 2334566666665555433 335555666666
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 045024 138 HHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAY 170 (1173)
Q Consensus 138 ~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~ 170 (1173)
..|++++|+.+|+++++++|++..+...++.+.
T Consensus 84 ~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I~ 116 (122)
T d1nzna_ 84 RLKEYEKALKYVRGLLQTEPQNNQAKELERLID 116 (122)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHhhhHHHHHHHHHHHHhCcCCHHHHHHHHHHH
Confidence 666666666666666666666655555554443
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=99.07 E-value=9.5e-10 Score=107.55 Aligned_cols=132 Identities=12% Similarity=0.079 Sum_probs=94.5
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q 045024 58 VAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQL 137 (1173)
Q Consensus 58 ~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~ 137 (1173)
..+...|..++. .|+|.+|+..|+++++..|..... .+.........+ ....+.++|.+|.
T Consensus 18 ~~~~~~G~~~f~-~~~y~~A~~~Y~~al~~~~~~~~~-------------~~~~~~~~~~~~-----~~~~~~Nla~~~~ 78 (153)
T d2fbna1 18 FDIKEEGNEFFK-KNEINEAIVKYKEALDFFIHTEEW-------------DDQILLDKKKNI-----EISCNLNLATCYN 78 (153)
T ss_dssp HHHHHHHHHHHH-TTCHHHHHHHHHHHHHTTTTCTTC-------------CCHHHHHHHHHH-----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-cCCHHHHHHHHHHHHhhCcchhhh-------------hhHHHHHhhhhH-----HHHHHhhHHHHHH
Confidence 345667888888 888888888888888766543211 000000111111 1245677888888
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcC
Q 045024 138 HHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLG 208 (1173)
Q Consensus 138 ~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g 208 (1173)
.+|++++|+..+++++.++|.++.+++.+|.++..+|++++|+..|+++++++|++..+...++.+..+++
T Consensus 79 ~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~kl~ 149 (153)
T d2fbna1 79 KNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLK 149 (153)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHH
T ss_pred HhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 88888888888888888888888888888888888888888888888888888888888877777765543
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.05 E-value=1.5e-10 Score=112.08 Aligned_cols=69 Identities=12% Similarity=-0.054 Sum_probs=33.9
Q ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCC----------HHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHc
Q 045024 71 SIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGK----------ESLEVVVCREASDKSPRAFWAFRRLGYLQLHH 139 (1173)
Q Consensus 71 ~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~~g~----------~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~ 139 (1173)
.+.+++|+..|+++++++|+++.+++.+|.++...++ +++|+..|+++++++|+++.+++.+|.+|..+
T Consensus 10 ~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~~ 88 (145)
T d1zu2a1 10 ILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF 88 (145)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHHHHHc
Confidence 4445555555555555555555555555555443333 33444445555555555444444444444443
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=99.05 E-value=6.7e-08 Score=103.26 Aligned_cols=206 Identities=11% Similarity=0.015 Sum_probs=149.1
Q ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCChhHHHHhHHHHHHh----cCCHHHHHH
Q 045024 403 KQHALIRGLQLDVSLADAWAHIGKLYGE----VGEKKLARQAFDSARSIDPSLALPWAGMSADVQAS----ESLVDDAFE 474 (1173)
Q Consensus 403 a~~a~~kal~l~p~~~~a~~~Lg~~y~~----~g~~e~A~~~f~~al~~~P~~~~a~~~l~a~~~~~----~g~~~eA~~ 474 (1173)
|.+.|+++.+. +++.+++.||.+|.. ..++..|...++.+... .++.++.. ++..+.. .++.+.|..
T Consensus 21 A~~~~~kAa~~--g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~--~~~~a~~~-l~~~~~~~~~~~~~~~~a~~ 95 (265)
T d1ouva_ 21 AKKYFEKACDL--KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL--NYSNGCHL-LGNLYYSGQGVSQNTNKALQ 95 (265)
T ss_dssp HHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHH-HHHHHHHTSSSCCCHHHHHH
T ss_pred HHHHHHHHHHC--CCHHHHHHHHHHHHcCCCcchhHHHHHHhhcccccc--cccchhhc-cccccccccccchhhHHHHH
Confidence 34566677654 578889999999987 67899999999987754 46666666 4434432 567888999
Q ss_pred HHHHHHhcCCchHHHHHHHHHHH--HhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHH
Q 045024 475 SCLRAVQILPLAEFQIGLAKLAK--LSGHLSSSQVFGAIQQAIQRGPHYPESHNLYGLVCEA----RSDYQAAVVSYRLA 548 (1173)
Q Consensus 475 ~~~~al~~~p~~~~~~~la~l~~--~~g~~~~~~A~~~l~~al~~~P~~~~a~~~lg~i~~~----~g~~~~A~~~~~kA 548 (1173)
.++.+....+.. ....++.... .........+...+.+... +.+..++..+|.++.. ..+...+...++++
T Consensus 96 ~~~~a~~~g~~~-a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a 172 (265)
T d1ouva_ 96 YYSKACDLKYAE-GCASLGGIYHDGKVVTRDFKKAVEYFTKACD--LNDGDGCTILGSLYDAGRGTPKDLKKALASYDKA 172 (265)
T ss_dssp HHHHHHHTTCHH-HHHHHHHHHHHCSSSCCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred HHhhhhhhhhhh-HHHhhcccccCCCcccchhHHHHHHhhhhhc--ccccchhhhhhhhhccCCCcccccccchhhhhcc
Confidence 999988876532 2233333332 2233334455555555444 6788889999999986 55777888888877
Q ss_pred HHHhhcCCCCCCCCchHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH----cCChHHHHH
Q 045024 549 RYAISSSSGTVPNSHFQDISINLARSLSR----AGNALDAVRECESLERQGMLDAEVLQVYAFSLWQ----LGKYDLALS 620 (1173)
Q Consensus 549 l~l~~~~pe~~~~~~~~~~~~~La~~~~~----~g~~~eAi~~~~~~~~~~p~~~~~~~~la~a~~~----~g~~~eA~~ 620 (1173)
.+. ....+.+++|.+|.. ..++++|+..|+++.+.+ ++.+.+.+|.+|.. ..++++|++
T Consensus 173 ~~~-----------g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g--~~~a~~~LG~~y~~G~g~~~n~~~A~~ 239 (265)
T d1ouva_ 173 CDL-----------KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE--NGGGCFNLGAMQYNGEGVTRNEKQAIE 239 (265)
T ss_dssp HHT-----------TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHTTSSSSCCSTTHHH
T ss_pred ccc-----------cccccccchhhhcccCcccccchhhhhhhHhhhhccc--CHHHHHHHHHHHHcCCCCccCHHHHHH
Confidence 421 224589999999987 678999999999998774 67899999999986 448999999
Q ss_pred HHHHHhhhc
Q 045024 621 MARNLASSV 629 (1173)
Q Consensus 621 ~~~~aL~~~ 629 (1173)
.|+++.+..
T Consensus 240 ~~~kAa~~g 248 (265)
T d1ouva_ 240 NFKKGCKLG 248 (265)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHCc
Confidence 999998844
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=99.03 E-value=2.8e-08 Score=106.36 Aligned_cols=228 Identities=18% Similarity=0.231 Sum_probs=183.0
Q ss_pred CHHHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---ccCCHHHHHHHHHHHHhhCCCCHHHHHH
Q 045024 21 DPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTR---FSIDTQRAIKCYQRAVSLSPDDSVSGEA 97 (1173)
Q Consensus 21 ~~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~---~~g~~~eA~~~~~~al~~~p~~~~a~~~ 97 (1173)
||.+++.+|..++..++ +++|+++|+++.+. .++.+++.+|.+|.. ...++..|..+++.+... .++.+...
T Consensus 1 ~p~~~~~lG~~~~~~~d-~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~--~~~~a~~~ 75 (265)
T d1ouva_ 1 DPKELVGLGAKSYKEKD-FTQAKKYFEKACDL--KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL--NYSNGCHL 75 (265)
T ss_dssp CHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHH
T ss_pred CHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCcchhHHHHHHhhcccccc--cccchhhc
Confidence 57899999999999887 99999999999764 588999999999986 245899999999998764 57788888
Q ss_pred HHHHHHH----CCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 045024 98 LCELLEH----GGKESLEVVVCREASDKSPRAFWAFRRLGYLQLH----HKKWSEAVQSLQHAIRGYPTSPHLWEALGLA 169 (1173)
Q Consensus 98 La~~~~~----~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~----~g~~~~A~~~l~~al~~~p~~~~~~~~la~~ 169 (1173)
+|.++.. .++.+.|...++++....+ ..+...++..+.. ......|...+.+... +.+...+..+|.+
T Consensus 76 l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~--~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~L~~~ 151 (265)
T d1ouva_ 76 LGNLYYSGQGVSQNTNKALQYYSKACDLKY--AEGCASLGGIYHDGKVVTRDFKKAVEYFTKACD--LNDGDGCTILGSL 151 (265)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHH--TTCHHHHHHHHHH
T ss_pred cccccccccccchhhHHHHHHHhhhhhhhh--hhHHHhhcccccCCCcccchhHHHHHHhhhhhc--ccccchhhhhhhh
Confidence 8888865 4678999999999987654 4556667777765 4567788888877655 5678889999999
Q ss_pred HHH----cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH----cCChHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHH
Q 045024 170 YHR----LGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLM----LGNFRKGVEQFQLALKISSENVSAHYGLASGLLGL 241 (1173)
Q Consensus 170 ~~~----~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~l 241 (1173)
+.. ..+...+...++.+.+ +.++.+.+.+|.+|.. ..++++|+.+|+++.+. .++.+.+.+|.++..
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~a~~--~g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~--g~~~a~~~LG~~y~~- 226 (265)
T d1ouva_ 152 YDAGRGTPKDLKKALASYDKACD--LKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACEL--ENGGGCFNLGAMQYN- 226 (265)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHT-
T ss_pred hccCCCcccccccchhhhhcccc--ccccccccchhhhcccCcccccchhhhhhhHhhhhcc--cCHHHHHHHHHHHHc-
Confidence 986 5677888888888876 4689999999999987 67899999999999886 467888888887763
Q ss_pred HHHHHHhhcHHHHHHHHHHHHHH
Q 045024 242 AKQCINLGAFRWGASLLEDACKV 264 (1173)
Q Consensus 242 ~~~~~a~g~~~~A~~~l~~Al~~ 264 (1173)
|. ....++.+|..+|++|...
T Consensus 227 G~--g~~~n~~~A~~~~~kAa~~ 247 (265)
T d1ouva_ 227 GE--GVTRNEKQAIENFKKGCKL 247 (265)
T ss_dssp TS--SSSCCSTTHHHHHHHHHHH
T ss_pred CC--CCccCHHHHHHHHHHHHHC
Confidence 31 1123677788888887664
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.03 E-value=1.7e-09 Score=102.10 Aligned_cols=100 Identities=15% Similarity=0.205 Sum_probs=82.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh-------HHHHH
Q 045024 127 WAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSI-------FPLLE 199 (1173)
Q Consensus 127 ~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-------~a~~~ 199 (1173)
..+..+|..++..|+|++|+.+|+++++++|+++.++.++|.+|..+|++++|+..++++++++|.+. .++..
T Consensus 5 ~~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~ 84 (128)
T d1elra_ 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (128)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 34567888888888888888888888888888888888888888888888888888888888877654 35667
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhhcCC
Q 045024 200 SGNIFLMLGNFRKGVEQFQLALKISSE 226 (1173)
Q Consensus 200 la~~~~~~g~~~~A~~~~~~al~~~p~ 226 (1173)
+|.++..++++++|+..|++++..+|+
T Consensus 85 lg~~~~~~~~~~~A~~~~~kal~~~~~ 111 (128)
T d1elra_ 85 IGNSYFKEEKYKDAIHFYNKSLAEHRT 111 (128)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCC
Confidence 788888888999999999999887765
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.02 E-value=7e-10 Score=107.32 Aligned_cols=100 Identities=17% Similarity=0.176 Sum_probs=58.6
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----------cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcC-
Q 045024 140 KKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHR----------LGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLG- 208 (1173)
Q Consensus 140 g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~----------~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g- 208 (1173)
+.|++|+..|+++++++|+++.+++.+|.++.. .+.+++|+..|+++++++|+++.+++++|.+|..+|
T Consensus 11 ~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~~g~ 90 (145)
T d1zu2a1 11 LLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAF 90 (145)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHHHHHccc
Confidence 334444444444444444444444444444432 233455666666666666666666666666665544
Q ss_pred ----------ChHHHHHHHHHHHhhcCCCHHHHHHHHHHHH
Q 045024 209 ----------NFRKGVEQFQLALKISSENVSAHYGLASGLL 239 (1173)
Q Consensus 209 ----------~~~~A~~~~~~al~~~p~~~~a~~~la~~~~ 239 (1173)
.+++|++.|+++++++|++..++..++.+..
T Consensus 91 ~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~k 131 (145)
T d1zu2a1 91 LTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAK 131 (145)
T ss_dssp HCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHT
T ss_pred chhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHHHH
Confidence 3578888888888888888877766655543
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=98.71 E-value=1.3e-08 Score=99.69 Aligned_cols=97 Identities=19% Similarity=0.148 Sum_probs=78.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCC------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-------
Q 045024 132 LGYLQLHHKKWSEAVQSLQHAIRGYPTS------------PHLWEALGLAYHRLGMFSAAIKSYGRAIELDDT------- 192 (1173)
Q Consensus 132 la~~~~~~g~~~~A~~~l~~al~~~p~~------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------- 192 (1173)
.|..++..|+|++|+..|++++++.|+. ..++.++|.+|..+|++++|+..+++++.+.|.
T Consensus 15 ~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~ 94 (156)
T d2hr2a1 15 DAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQD 94 (156)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTST
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhccccccccccc
Confidence 3667777888888888888888876643 357888999999999999999999999876432
Q ss_pred ----ChHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCH
Q 045024 193 ----SIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENV 228 (1173)
Q Consensus 193 ----~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 228 (1173)
...+++++|.+|..+|++++|+..|++++++.|+..
T Consensus 95 ~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~~ 134 (156)
T d2hr2a1 95 EGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERK 134 (156)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred ccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHhh
Confidence 234678899999999999999999999999876543
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.61 E-value=1.7e-07 Score=82.74 Aligned_cols=88 Identities=11% Similarity=0.011 Sum_probs=75.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHH
Q 045024 522 PESHNLYGLVCEARSDYQAAVVSYRLARYAISSSSGTVPNSHFQDISINLARSLSRAGNALDAVRECESLERQGMLDAEV 601 (1173)
Q Consensus 522 ~~a~~~lg~i~~~~g~~~~A~~~~~kAl~l~~~~pe~~~~~~~~~~~~~La~~~~~~g~~~eAi~~~~~~~~~~p~~~~~ 601 (1173)
+...+.+|.++.+.|+|++|+..|++|+++....++. ....+.++.++|.++.+.|++++|+..|+++++.+|+++.+
T Consensus 5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~--~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a 82 (95)
T d1tjca_ 5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEIS--TIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRA 82 (95)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCC--SSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhcc--CccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHH
Confidence 4567899999999999999999999998876654332 34567899999999999999999999999999999999999
Q ss_pred HHHHHHHHHH
Q 045024 602 LQVYAFSLWQ 611 (1173)
Q Consensus 602 ~~~la~a~~~ 611 (1173)
+.+++.....
T Consensus 83 ~~Nl~~~~~~ 92 (95)
T d1tjca_ 83 NGNLKYFEYI 92 (95)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9887765443
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.61 E-value=9.2e-08 Score=84.57 Aligned_cols=73 Identities=15% Similarity=0.113 Sum_probs=32.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCC-------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHH
Q 045024 130 RRLGYLQLHHKKWSEAVQSLQHAIRGYPT-------SPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGN 202 (1173)
Q Consensus 130 ~~la~~~~~~g~~~~A~~~l~~al~~~p~-------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~ 202 (1173)
+.+|.++++.|+|++|+..|++++++.|. ...++.++|.++.+.|++++|+..|+++++++|+++.++.+++.
T Consensus 9 ~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~Nl~~ 88 (95)
T d1tjca_ 9 FELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLKY 88 (95)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHHHHHH
Confidence 34444444444444444444444443221 13344444444444444444444444444444444444444433
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=98.56 E-value=4.6e-07 Score=88.18 Aligned_cols=126 Identities=16% Similarity=0.073 Sum_probs=98.1
Q ss_pred HHHHHH--HHHHHHcCCHHHHHHHHHHHHHhCCCC------------hHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCC
Q 045024 161 HLWEAL--GLAYHRLGMFSAAIKSYGRAIELDDTS------------IFPLLESGNIFLMLGNFRKGVEQFQLALKISSE 226 (1173)
Q Consensus 161 ~~~~~l--a~~~~~~g~~~~A~~~~~~al~~~p~~------------~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 226 (1173)
.++..+ |..++..|+|++|+..|++++++.|+. ..++.++|.+|..+|++++|+..+++++.+.|.
T Consensus 8 ~a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~ 87 (156)
T d2hr2a1 8 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR 87 (156)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccc
Confidence 344444 788889999999999999999988764 357889999999999999999999999987543
Q ss_pred ----CHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHhhhcCChHHHHHHhchHH
Q 045024 227 ----NVSAHYGLASGLLGLAKQCINLGAFRWGASLLEDACKVAEANTRLAGNMSCIWKLHGDIQ 286 (1173)
Q Consensus 227 ----~~~a~~~la~~~~~l~~~~~a~g~~~~A~~~l~~Al~~~~~~~~~~~~~~~~~~~~g~~~ 286 (1173)
++........++..+|..+...|++++|+..|++|+++.++.....+....+....++..
T Consensus 88 ~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~~~~~~~~~~~~~~~~~~l 151 (156)
T d2hr2a1 88 RGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMMEVAIDRI 151 (156)
T ss_dssp HCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHHHHHHHHHH
T ss_pred cccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHhhchHHHHHHHHHHHHHHH
Confidence 223333455677778888888889999999999999999887766555555544444433
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=98.51 E-value=6.9e-08 Score=102.66 Aligned_cols=127 Identities=13% Similarity=0.004 Sum_probs=70.5
Q ss_pred HHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 045024 103 EHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKS 182 (1173)
Q Consensus 103 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 182 (1173)
...|++++|+..++++++.+|+++.++..+|.++...|++++|+..|+++++++|++...+..++.++...+..+++...
T Consensus 7 L~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~a~~~ 86 (264)
T d1zbpa1 7 LSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDFAQG 86 (264)
T ss_dssp TTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHHHHHH
Confidence 34555555555555555555555555555566666666666666666666666665555555555555555555554443
Q ss_pred HHHHHH-hCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCHH
Q 045024 183 YGRAIE-LDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVS 229 (1173)
Q Consensus 183 ~~~al~-~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 229 (1173)
+.+... ..|.....+...+.++...|++++|...++++.+..|..+.
T Consensus 87 ~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~~ 134 (264)
T d1zbpa1 87 AATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGF 134 (264)
T ss_dssp CCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCE
T ss_pred hhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCc
Confidence 333222 22333444555556666666666666666666666665544
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=98.51 E-value=5.9e-08 Score=103.18 Aligned_cols=131 Identities=15% Similarity=-0.034 Sum_probs=113.0
Q ss_pred HHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHH
Q 045024 65 HYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSE 144 (1173)
Q Consensus 65 ~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~ 144 (1173)
.-.+. .|++++|+..|+++++.+|++..++..++.++...|++++|+..++++++.+|++..++..++.++...+..++
T Consensus 4 ~~aL~-~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~ 82 (264)
T d1zbpa1 4 KNALS-EGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKD 82 (264)
T ss_dssp HHHTT-TTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH-CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHH
Confidence 34556 89999999999999999999999999999999999999999999999999999999999999998887777766
Q ss_pred HHHHHHHHHH-hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHH
Q 045024 145 AVQSLQHAIR-GYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFP 196 (1173)
Q Consensus 145 A~~~l~~al~-~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a 196 (1173)
+...+.+... ..|.....+...+..+...|++++|+..++++.+..|..+..
T Consensus 83 a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~~~ 135 (264)
T d1zbpa1 83 FAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFL 135 (264)
T ss_dssp HTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEE
T ss_pred HHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCcc
Confidence 6554443322 345556777888999999999999999999999999987654
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.32 E-value=1.1e-06 Score=87.50 Aligned_cols=118 Identities=17% Similarity=0.031 Sum_probs=75.4
Q ss_pred HHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q 045024 57 AVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQ 136 (1173)
Q Consensus 57 ~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~ 136 (1173)
...+...|..... .|++++|...|.+++.+.+.+....... +.+ .......+.+....++..++.++
T Consensus 11 f~~~~~~g~~~~~-~g~~e~A~~~~~~AL~l~rG~~l~~~~~-------~~w-----~~~~r~~l~~~~~~a~~~la~~~ 77 (179)
T d2ff4a2 11 FVAEKTAGVHAAA-AGRFEQASRHLSAALREWRGPVLDDLRD-------FQF-----VEPFATALVEDKVLAHTAKAEAE 77 (179)
T ss_dssp HHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCSSTTGGGTT-------STT-----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-CCCHHHHHHHHHHHHhhCcccccccCcc-------hHH-----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677777778 8888888888888888776654321100 110 11111222233455666777777
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 045024 137 LHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAI 187 (1173)
Q Consensus 137 ~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 187 (1173)
...|++++|+..+++++..+|.+..+|..++.++...|++++|+..|+++.
T Consensus 78 ~~~g~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~ 128 (179)
T d2ff4a2 78 IACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVK 128 (179)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHCCCchHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 777777777777777777777777777777777777777777777777663
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.26 E-value=4.9e-06 Score=82.51 Aligned_cols=119 Identities=9% Similarity=-0.119 Sum_probs=92.4
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 045024 92 SVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYH 171 (1173)
Q Consensus 92 ~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~ 171 (1173)
...+...|......|++++|+..|.+++.+.+........ .+.+ .......+.+....++..++.++.
T Consensus 11 f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~-------~~~w-----~~~~r~~l~~~~~~a~~~la~~~~ 78 (179)
T d2ff4a2 11 FVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLR-------DFQF-----VEPFATALVEDKVLAHTAKAEAEI 78 (179)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGT-------TSTT-----HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCc-------chHH-----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457778888888888888888888888887765322110 0111 111122233344678899999999
Q ss_pred HcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 045024 172 RLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALK 222 (1173)
Q Consensus 172 ~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~ 222 (1173)
..|++++|+..++++++.+|.+..++..++.++...|++.+|+..|+++..
T Consensus 79 ~~g~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~ 129 (179)
T d2ff4a2 79 ACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 129 (179)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HCCCchHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999844
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=97.45 E-value=0.00086 Score=62.15 Aligned_cols=12 Identities=33% Similarity=0.354 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHH
Q 045024 39 KEKAAEHFVIAA 50 (1173)
Q Consensus 39 ~~~A~~~~~~al 50 (1173)
+++|+.+|+++.
T Consensus 9 ~~~A~~~~~kaa 20 (133)
T d1klxa_ 9 LKKAIQYYVKAC 20 (133)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 344444444444
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=97.43 E-value=0.00096 Score=61.82 Aligned_cols=111 Identities=19% Similarity=0.136 Sum_probs=74.2
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH----cCCHHHHHH
Q 045024 72 IDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLH----HKKWSEAVQ 147 (1173)
Q Consensus 72 g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~----~g~~~~A~~ 147 (1173)
.|+++|+.+|+++.+.+ ++.+.+.++. ....+.++|+..++++.+. +++.+.+.+|.+|.. ..++++|+.
T Consensus 7 kd~~~A~~~~~kaa~~g--~~~a~~~l~~--~~~~~~~~a~~~~~~aa~~--g~~~a~~~Lg~~y~~g~~~~~d~~~A~~ 80 (133)
T d1klxa_ 7 KDLKKAIQYYVKACELN--EMFGCLSLVS--NSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQ 80 (133)
T ss_dssp HHHHHHHHHHHHHHHTT--CTTHHHHHHT--CTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred cCHHHHHHHHHHHHHCC--Chhhhhhhcc--ccccCHHHHHHHHhhhhcc--cchhhhhhHHHhhhhccccchhhHHHHH
Confidence 45677777777777653 4444555543 2345677777777777653 566777777777765 456777777
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhC
Q 045024 148 SLQHAIRGYPTSPHLWEALGLAYHR----LGMFSAAIKSYGRAIELD 190 (1173)
Q Consensus 148 ~l~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~ 190 (1173)
+|+++.+. .++.+.+.+|.+|.. ..++++|+..|+++.+..
T Consensus 81 ~~~~aa~~--g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G 125 (133)
T d1klxa_ 81 YYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 125 (133)
T ss_dssp HHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHhhhhcc--CcchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCC
Confidence 77777664 456777777777766 457777777777777654
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.41 E-value=0.0008 Score=60.37 Aligned_cols=73 Identities=7% Similarity=-0.111 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCHHHHH
Q 045024 160 PHLWEALGLAYHRLG---MFSAAIKSYGRAIELDDTS-IFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHY 232 (1173)
Q Consensus 160 ~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~p~~-~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~ 232 (1173)
..+.+..|.++.+.. +.++|+..++.+++.+|.+ .+.++.+|..|.++|+|++|..+++++++++|++..+..
T Consensus 35 ~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~~ 111 (124)
T d2pqrb1 35 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 111 (124)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred cchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHHH
Confidence 556666777766543 3456777777777766654 367777777777777777777777777777777766553
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.35 E-value=0.00093 Score=59.95 Aligned_cols=76 Identities=11% Similarity=0.003 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHH
Q 045024 126 FWAFRRLGYLQLHHK---KWSEAVQSLQHAIRGYPTS-PHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESG 201 (1173)
Q Consensus 126 ~~a~~~la~~~~~~g---~~~~A~~~l~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la 201 (1173)
+.+.+..|.++.+.. +.++|+..++++++.+|.+ .+.++.+|..|.+.|+|++|..+++++++++|++..+....-
T Consensus 35 ~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~~L~~ 114 (124)
T d2pqrb1 35 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKS 114 (124)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred cchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHHHHHH
Confidence 456666666666543 3456777777777777654 367777777777777777777777777777777766654443
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=97.30 E-value=0.22 Score=55.52 Aligned_cols=197 Identities=11% Similarity=-0.066 Sum_probs=102.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCChhHHHHhHH---HHHHhcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCC
Q 045024 425 GKLYGEVGEKKLARQAFDSARSIDPSLALPWAGMSA---DVQASESLVDDAFESCLRAVQILPLAEFQIGLAKLAKLSGH 501 (1173)
Q Consensus 425 g~~y~~~g~~e~A~~~f~~al~~~P~~~~a~~~l~a---~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~la~l~~~~g~ 501 (1173)
|..-....+.+.|...+.......+.....+..... ..+...+..+.|...+.......................++
T Consensus 221 ~l~rla~~d~~~a~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~w~~~~al~~~~ 300 (450)
T d1qsaa1 221 AFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSLIERRVRMALGTGD 300 (450)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHhccChhHHHHHHHhhhhcccccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccccchHHHHHHHHHHHHcCC
Confidence 333334457777777777766655555444433221 12223455677777776666555544443334444445554
Q ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----------HhhcCC----CCCC----CC
Q 045024 502 LSSSQVFGAIQQAIQRGPHYPESHNLYGLVCEARSDYQAAVVSYRLARY-----------AISSSS----GTVP----NS 562 (1173)
Q Consensus 502 ~~~~~A~~~l~~al~~~P~~~~a~~~lg~i~~~~g~~~~A~~~~~kAl~-----------l~~~~p----e~~~----~~ 562 (1173)
...+...+..+.......+...+-+|..+...|+.++|...|..+.. .+...+ ..+. ..
T Consensus 301 --~~~~~~~~~~l~~~~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~~~~fYG~LAa~~Lg~~~~~~~~~~~~~~~~~ 378 (450)
T d1qsaa1 301 --RRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQQRGFYPMVAAQRIGEEYELKIDKAPQNVDSA 378 (450)
T ss_dssp --HHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSHHHHHHHHHTTCCCCCCCCCCCSCCCCH
T ss_pred --hHHHHHHHHhcCcccccHHHHHHHHHHHHHHcCChhhHHHHHHHHhcCCChHHHHHHHHcCCCCCCCcCCCCccHHHh
Confidence 23444444433222223577789999999999999999999998632 001000 0000 00
Q ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 045024 563 HFQDISINLARSLSRAGNALDAVRECESLERQGMLDAEVLQVYAFSLWQLGKYDLALSMARNL 625 (1173)
Q Consensus 563 ~~~~~~~~La~~~~~~g~~~eAi~~~~~~~~~~p~~~~~~~~la~a~~~~g~~~eA~~~~~~a 625 (1173)
-........+..+...|...+|...+..+... .++.....++....+.|.++.|+....++
T Consensus 379 ~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~--~~~~~~~~la~lA~~~g~~~~aI~a~~~~ 439 (450)
T d1qsaa1 379 LTQGPEMARVRELMYWNLDNTARSEWANLVKS--KSKTEQAQLARYAFNNQWWDLSVQATIAG 439 (450)
T ss_dssp HHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred hhcChHHHHHHHHHHcCCchHHHHHHHHHHhC--CCHHHHHHHHHHHHHCCChhHHHHHHHHH
Confidence 01112223445555556666665555555422 23344444555555666666665554443
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=94.80 E-value=2.9 Score=43.67 Aligned_cols=130 Identities=18% Similarity=0.132 Sum_probs=82.0
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 045024 95 GEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLG 174 (1173)
Q Consensus 95 ~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g 174 (1173)
....|..+.+.|.++.|...|...- + +-.+..++...++++.|...+.+. +++..|..+...+....
T Consensus 17 ~~~i~~~c~~~~lye~A~~lY~~~~----d----~~rl~~~~v~l~~~~~avd~~~k~-----~~~~~~k~~~~~l~~~~ 83 (336)
T d1b89a_ 17 IQQVGDRCYDEKMYDAAKLLYNNVS----N----FGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGK 83 (336)
T ss_dssp ------------CTTTHHHHHHHTT----C----HHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHhCC----C----HHHHHHHHHhhccHHHHHHHHHHc-----CCHHHHHHHHHHHHhCc
Confidence 4456677777888888888876431 1 344556777888888888887765 56778888888888777
Q ss_pred CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHH
Q 045024 175 MFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLASGLLGL 241 (1173)
Q Consensus 175 ~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~l 241 (1173)
...-|.-. ... ...++.-.......|...|.+++.+.+++.++...+.+...+..++.++.+.
T Consensus 84 e~~la~i~-~~~---~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~~~~~~~~~~L~~lyak~ 146 (336)
T d1b89a_ 84 EFRLAQMC-GLH---IVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKF 146 (336)
T ss_dssp CHHHHHHT-TTT---TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTT
T ss_pred HHHHHHHH-HHH---hhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCCccchHHHHHHHHHHHHh
Confidence 66554221 111 1124444556777888889999999999988887777887777777766553
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=94.36 E-value=4.6 Score=44.04 Aligned_cols=181 Identities=14% Similarity=-0.038 Sum_probs=113.8
Q ss_pred HhcCCHHHHHHHHHHHHhcCCchH--HHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Q 045024 464 ASESLVDDAFESCLRAVQILPLAE--FQIGLAKLAKLSG-HLSSSQVFGAIQQAIQRGPHYPESHNLYGLVCEARSDYQA 540 (1173)
Q Consensus 464 ~~~g~~~eA~~~~~~al~~~p~~~--~~~~la~l~~~~g-~~~~~~A~~~l~~al~~~P~~~~a~~~lg~i~~~~g~~~~ 540 (1173)
....+.+.|...+.......+... .......+..... ....+.+...+........+ ......++......+++..
T Consensus 225 la~~d~~~a~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~w~~~~al~~~~~~~ 303 (450)
T d1qsaa1 225 VARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQS-TSLIERRVRMALGTGDRRG 303 (450)
T ss_dssp HHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCC-HHHHHHHHHHHHHHTCHHH
T ss_pred HhccChhHHHHHHHhhhhcccccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccccc-hHHHHHHHHHHHHcCChHH
Confidence 345688888888888766554322 2222222222221 22234566666655554444 4433334444667789999
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHH------------------
Q 045024 541 AVVSYRLARYAISSSSGTVPNSHFQDISINLARSLSRAGNALDAVRECESLERQGMLDAEVL------------------ 602 (1173)
Q Consensus 541 A~~~~~kAl~l~~~~pe~~~~~~~~~~~~~La~~~~~~g~~~eAi~~~~~~~~~~p~~~~~~------------------ 602 (1173)
+...++.. +.+ ........+.+|+.+...|+.++|...|..+... + +..++
T Consensus 304 ~~~~~~~l-------~~~--~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~~-~-~fYG~LAa~~Lg~~~~~~~~~~~ 372 (450)
T d1qsaa1 304 LNTWLARL-------PME--AKEKDEWRYWQADLLLERGREAEAKEILHQLMQQ-R-GFYPMVAAQRIGEEYELKIDKAP 372 (450)
T ss_dssp HHHHHHHS-------CTT--GGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS-C-SHHHHHHHHHTTCCCCCCCCCCC
T ss_pred HHHHHHhc-------Ccc--cccHHHHHHHHHHHHHHcCChhhHHHHHHHHhcC-C-ChHHHHHHHHcCCCCCCCcCCCC
Confidence 98888743 111 2233567899999999999999999999987542 1 11111
Q ss_pred ------------HHHHHHHHHcCChHHHHHHHHHHhhhccccccchhhhhHHHHHHHHHHhcChhhhhHHhhh
Q 045024 603 ------------QVYAFSLWQLGKYDLALSMARNLASSVSAMEQSSAAASVSFICRLLYHISGLDSTINSILK 663 (1173)
Q Consensus 603 ------------~~la~a~~~~g~~~eA~~~~~~aL~~~p~~~~~~~~~~~~~la~l~~~~g~~~~A~~~l~~ 663 (1173)
+..+..+...|+..+|...+..++...+ +.-...++.+....|.++.++....+
T Consensus 373 ~~~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~~~-------~~~~~~la~lA~~~g~~~~aI~a~~~ 438 (450)
T d1qsaa1 373 QNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKSKS-------KTEQAQLARYAFNNQWWDLSVQATIA 438 (450)
T ss_dssp SCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC-------HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ccHHHhhhcChHHHHHHHHHHcCCchHHHHHHHHHHhCCC-------HHHHHHHHHHHHHCCChhHHHHHHHH
Confidence 4567778888888888888887776322 35566778888888888887754433
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=91.09 E-value=7 Score=40.61 Aligned_cols=172 Identities=10% Similarity=0.054 Sum_probs=108.3
Q ss_pred HHHHHHHHHccCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHC
Q 045024 26 LDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHG 105 (1173)
Q Consensus 26 ~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~~ 105 (1173)
-..|..+.+.|. |+.|...|... ++ +-.+..++.+ .++++.|.+.+.++ ++...|..+...+...
T Consensus 18 ~~i~~~c~~~~l-ye~A~~lY~~~----~d----~~rl~~~~v~-l~~~~~avd~~~k~-----~~~~~~k~~~~~l~~~ 82 (336)
T d1b89a_ 18 QQVGDRCYDEKM-YDAAKLLYNNV----SN----FGRLASTLVH-LGEYQAAVDGARKA-----NSTRTWKEVCFACVDG 82 (336)
T ss_dssp -----------C-TTTHHHHHHHT----TC----HHHHHHHHHT-TTCHHHHHHHHHHH-----TCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCCC-HHHHHHHHHhC----CC----HHHHHHHHHh-hccHHHHHHHHHHc-----CCHHHHHHHHHHHHhC
Confidence 345666667776 88888888752 22 3345577788 99999999988775 5678888888888887
Q ss_pred CCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 045024 106 GKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGR 185 (1173)
Q Consensus 106 g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 185 (1173)
.....|..+ .... ..++.-...+...|...|.+++.+.+++..+...+.+...+..++.+|.+.+ .++-.+.+..
T Consensus 83 ~e~~la~i~-~~~~---~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~~~~~~~~~~L~~lyak~~-~~kl~e~l~~ 157 (336)
T d1b89a_ 83 KEFRLAQMC-GLHI---VVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFK-PQKMREHLEL 157 (336)
T ss_dssp TCHHHHHHT-TTTT---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTC-HHHHHHHHHH
T ss_pred cHHHHHHHH-HHHh---hcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCCccchHHHHHHHHHHHHhC-hHHHHHHHHh
Confidence 766554221 1111 1244445567788889999999999999999888888989999999887754 3444444433
Q ss_pred H-HHhCCC-------ChHHHHHHHHHHHHcCChHHHHHHH
Q 045024 186 A-IELDDT-------SIFPLLESGNIFLMLGNFRKGVEQF 217 (1173)
Q Consensus 186 a-l~~~p~-------~~~a~~~la~~~~~~g~~~~A~~~~ 217 (1173)
. ...++. ....|-.+..+|.+.|++++|+...
T Consensus 158 ~s~~y~~~k~~~~c~~~~l~~elv~Ly~~~~~~~~A~~~~ 197 (336)
T d1b89a_ 158 FWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITM 197 (336)
T ss_dssp HSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccccCCHHHHHHHHHHcCChHHHHHHHHhcCCHHHHHHHH
Confidence 2 111111 1122345677777888888877654
|