Citrus Sinensis ID: 045043

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490
DKYQRRAKELEEEVKFMINNENGEMLPILELIDDVQRLGLGYRFENEIKRALHRILSWQGYDHPEGNFTETVHKDVKGVLSLNEASYLAFEGEDILNEALTFSRTHLNQLKTKLNPYMSELVSHSLELPRHYRMRRLEVRWYTEAYRKKDANCMLLEFAKLDFNRVQSSYQEEIKNLTRWWEDIDLAKNLKFARDRLMECFIWSVGMVPKPQYSNCRRALTKVAAFVTIIDYIYAVYGTLDELELFTYAVERWDINAVNDLPNYMKLSFLALYNTINEMAYDILKQHISFPALYNTVNEMAYDILKQHGEIIIPYLTKAWADLCKSFLQEAKWSYNEYTPTFEEYLENAWRSSSGELSLVHSYFLVSRSINKKALESLGKYHNLIRWPSTIFRLSNDLATSKIGKTASSILCYMHETGLSEEIARQHLRNMIDSCWKKMNKEWVNDQHPFVEPFVETAFNLARIAQCTYQYGDEHGAPDGRAKKRVVISC
cHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHccccccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHccccHHHHHHHHHHcccccccHHHHHHHHcHHHHHHccccHHcccccccccccccccccHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHccc
ccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHccHEcccccEcHHHcccHHHHHHHHHHHcccccccHHHccHHHHHHHHHHHHHHHccccHHHHHHHHHHcccccccHHHHHHHHHHHcHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHcccccccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHccHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHccHcccHHHHHHHHHHcccccccHHHHHHHHcccHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHcccccccccccccccEEEEEc
DKYQRRAKELEEEVKFMINnengemlpILELIDDVQrlglgyrfENEIKRALHRILSwqgydhpegnftetVHKDVKGVLSLNEASYLAFEGEDILNEALTFSRTHLNQLKTKLNPYMSELVShslelprhyrmRRLEVRWYTEAYRKKDANCMLLEFAKLDFNRVQSSYQEEIKNLTRWWEDIDLAKNLKFARDRLMECFIwsvgmvpkpqysnCRRALTKVAAFVTIIDYIYAVYGTLDELELFTYAVERwdinavndlpnymKLSFLALYNTINEMAYDILKQHISFPALYNTVNEMAYDILKQHGEIIIPYLTKAWADLCKSFLQEAKWSYNEYTPTFEEYLENAwrsssgelslVHSYFLVSRSINKKALESLgkyhnlirwpstifrlsndlatskiGKTASSILCYMHETGLSEEIARQHLRNMIDSCWKKMNkewvndqhpfvepFVETAFNLARIAQCTyqygdehgapdgrakkRVVISC
dkyqrrakELEEEVKFMInnengemlpILELIDDVQRLGLGYRFENEIKRALHRILSWQGYDHPEGNFTETVHKDVKGVLSLNEASYLAFEGEDILNEALTFSRTHLNQLKTKLNPYMSELVShslelprhyrmRRLEVRWYTEAYRKKDANCMLLEFAKLDFNRVQSSYQEEIKNLTRWWEDIDLAKNLKFARDRLMECFIWSVGMVPKPQYSNCRRALTKVAAFVTIIDYIYAVYGTLDELELFTYAVERWDINAVNDLPNYMKLSFLALYNTINEMAYDILKQHISFPALYNTVNEMAYDILKQHGEIIIPYLTKAWADLCKSFLQEAKWSYNEYTPTFEEYLENAWRSSSGELSLVHSYFLVSRSINKKALESLGKYHNLIRWPSTIFRLSNDLATSKIGKTASSILCYMHETGLSEEIARQHLRNMIDSCWKKMNKEWVNDQHPFVEPFVETAFNLARIAQCTYQYGdehgapdgrakkrvvisc
DKYQRRAKELEEEVKFMINNENGEMLPILELIDDVQRLGLGYRFENEIKRALHRILSWQGYDHPEGNFTETVHKDVKGVLSLNEASYLAFEGEDILNEALTFSRTHLNQLKTKLNPYMSELVSHSLELPRHYRMRRLEVRWYTEAYRKKDANCMLLEFAKLDFNRVQSSYQEEIKNLTRWWEDIDLAKNLKFARDRLMECFIWSVGMVPKPQYSNCRRALTKVAAFVTIIDYIYAVYGTLDELELFTYAVERWDINAVNDLPNYMKLSFLALYNTINEMAYDILKQHISFPALYNTVNEMAYDILKQHGEIIIPYLTKAWADLCKSFLQEAKWSYNEYTPTFEEYLENAWRSSSGELSLVHSYFLVSRSINKKALESLGKYHNLIRWPSTIFRLSNDLATSKIGKTASSILCYMHETGLSEEIARQHLRNMIDSCWKKMNKEWVNDQHPFVEPFVETAFNLARIAQCTYQYGDEHGAPDGRAKKRVVISC
**************KFMINNENGEMLPILELIDDVQRLGLGYRFENEIKRALHRILSWQGYDHPEGNFTETVHKDVKGVLSLNEASYLAFEGEDILNEALTFSRTHLNQLKTKLNPYMSELVSHSLELPRHYRMRRLEVRWYTEAYRKKDANCMLLEFAKLDFNRVQSSYQEEIKNLTRWWEDIDLAKNLKFARDRLMECFIWSVGMVPKPQYSNCRRALTKVAAFVTIIDYIYAVYGTLDELELFTYAVERWDINAVNDLPNYMKLSFLALYNTINEMAYDILKQHISFPALYNTVNEMAYDILKQHGEIIIPYLTKAWADLCKSFLQEAKWSYNEYTPTFEEYLENAWRSSSGELSLVHSYFLVSRSINKKALESLGKYHNLIRWPSTIFRLSNDLATSKIGKTASSILCYMHETGLSEEIARQHLRNMIDSCWKKMNKEWVNDQHPFVEPFVETAFNLARIAQCTYQYGD*****************
***QRRAKELEEEVKFMINNENGEMLPILELIDDVQRLGLGYRFENEIKRALHRILSWQGYDHPEGNFTETVHKDVKGVLSLNEASYLAFEGEDILNEALTFSRTHLNQLKT********LVSHSLELPRHYRMRRLEVRWYTEAYRKKDANCMLLEFAKLDFNRVQSSYQEEIKNLTRWWEDIDLAKNLKFARDRLMECFIWSVGMVPKPQYSNCRRALTKVAAFVTIIDYIYAVYGTLDELELFTYAVERWDINAVNDLPNYMKLSFLALYNTINEMAYDILKQHISFPALYNTVNEMAYDILKQHGEIIIPYLTKAWADLCKSFLQEAKWSYNEYTPTFEEYLENAWRSSSGELSLVHSYFLVSRSINKKALESLGKYHNLIRWPSTIFRLSNDLATSKIGKTASSILCYMHETGLSEEIARQHLRNMIDSCWKKMNKEWVNDQHPFVEPFVETAFNLARIAQCTYQYGDEHGAPDGRAKKRVVISC
********ELEEEVKFMINNENGEMLPILELIDDVQRLGLGYRFENEIKRALHRILSWQGYDHPEGNFTETVHKDVKGVLSLNEASYLAFEGEDILNEALTFSRTHLNQLKTKLNPYMSELVSHSLELPRHYRMRRLEVRWYTEAYRKKDANCMLLEFAKLDFNRVQSSYQEEIKNLTRWWEDIDLAKNLKFARDRLMECFIWSVGMVPKPQYSNCRRALTKVAAFVTIIDYIYAVYGTLDELELFTYAVERWDINAVNDLPNYMKLSFLALYNTINEMAYDILKQHISFPALYNTVNEMAYDILKQHGEIIIPYLTKAWADLCKSFLQEAKWSYNEYTPTFEEYLENAWRSSSGELSLVHSYFLVSRSINKKALESLGKYHNLIRWPSTIFRLSNDLATSKIGKTASSILCYMHETGLSEEIARQHLRNMIDSCWKKMNKEWVNDQHPFVEPFVETAFNLARIAQCTYQYGDEHGAPDGRAKKRVVISC
DKYQRRAKELEEEVKFMINNENGEMLPILELIDDVQRLGLGYRFENEIKRALHRILSWQGYDHPEGNFTETVHKDVKGVLSLNEASYLAFEGEDILNEALTFSRTHLNQLKTKLNPYMSELVSHSLELPRHYRMRRLEVRWYTEAYRKKDANCMLLEFAKLDFNRVQSSYQEEIKNLTRWWEDIDLAKNLKFARDRLMECFIWSVGMVPKPQYSNCRRALTKVAAFVTIIDYIYAVYGTLDELELFTYAVERWDINAVNDLPNYMKLSFLALYNTINEMAYDILKQHISFPALYNTVNEMAYDILKQHGEIIIPYLTKAWADLCKSFLQEAKWSYNEYTPTFEEYLENAWRSSSGELSLVHSYFLVSRSINKKALESLGKYHNLIRWPSTIFRLSNDLATSKIGKTASSILCYMHETGLSEEIARQHLRNMIDSCWKKMNKEWVNDQHPFVEPFVETAFNLARIAQCTYQYGDEHGAPDGRAKKRVVISC
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DKYQRRAKELEEEVKFMINNENGEMLPILELIDDVQRLGLGYRFENEIKRALHRILSWQGYDHPEGNFTETVHKDVKGVLSLNEASYLAFEGEDILNEALTFSRTHLNQLKTKLNPYMSELVSHSLELPRHYRMRRLEVRWYTEAYRKKDANCMLLEFAKLDFNRVQSSYQEEIKNLTRWWEDIDLAKNLKFARDRLMECFIWSVGMVPKPQYSNCRRALTKVAAFVTIIDYIYAVYGTLDELELFTYAVERWDINAVNDLPNYMKLSFLALYNTINEMAYDILKQHISFPALYNTVNEMAYDILKQHGEIIIPYLTKAWADLCKSFLQEAKWSYNEYTPTFEEYLENAWRSSSGELSLVHSYFLVSRSINKKALESLGKYHNLIRWPSTIFRLSNDLATSKIGKTASSILCYMHETGLSEEIARQHLRNMIDSCWKKMNKEWVNDQHPFVEPFVETAFNLARIAQCTYQYGDEHGAPDGRAKKRVVISC
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query490 2.2.26 [Sep-21-2011]
Q7XAS7595 Isoprene synthase, chloro N/A no 0.944 0.778 0.520 1e-148
Q50L36595 Isoprene synthase, chloro N/A no 0.944 0.778 0.520 1e-147
Q9AR86595 Isoprene synthase, chloro N/A no 0.944 0.778 0.517 1e-146
Q672F7595 Tricyclene synthase EBOS, N/A no 0.942 0.776 0.492 1e-136
Q6EJ97608 Isoprene synthase, chloro N/A no 0.948 0.764 0.488 1e-133
Q5UB07580 Tricyclene synthase TPS4, N/A no 0.938 0.793 0.484 1e-133
Q6PWU2590 (-)-alpha-terpineol synth no no 0.946 0.786 0.470 1e-129
B3TPQ7592 Alpha-terpineol synthase, N/A no 0.940 0.778 0.448 1e-125
Q93X23597 Myrcene synthase, chlorop N/A no 0.938 0.770 0.451 1e-119
G1JUH1607 (-)-camphene/tricyclene s N/A no 0.946 0.764 0.428 1e-110
>sp|Q7XAS7|ISPS_POPTM Isoprene synthase, chloroplastic OS=Populus tremuloides GN=ISPS PE=3 SV=1 Back     alignment and function desciption
 Score =  525 bits (1352), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 273/524 (52%), Positives = 353/524 (67%), Gaps = 61/524 (11%)

Query: 3   YQRRAKELEEEVKFMINNENGEMLPILELIDDVQRLGLGYRFENEIKRALHRILSWQGYD 62
           ++ +AK+LE EV+  INNE  E L +LELID+VQRLGLGYRFE++I+RAL R +S  G+D
Sbjct: 82  HKDKAKKLEAEVRREINNEKAEFLTLLELIDNVQRLGLGYRFESDIRRALDRFVSSGGFD 141

Query: 63  ---------------------------------HPEGNFTETVHKDVKGVLSLNEASYLA 89
                                               GNF E + +D+K +LSL EAS+LA
Sbjct: 142 GVTKTSLHGTALSFRLLRQHGFEVSQEAFSGFKDQNGNFLENLKEDIKAILSLYEASFLA 201

Query: 90  FEGEDILNEALTFSRTHLNQL-KTKLNPYMSELVSHSLELPRHYRMRRLEVRWYTEAYRK 148
            EGE+IL+EA  F+ +HL +L + K+   ++E VSH+LELP H R +RLE  W  EAYRK
Sbjct: 202 LEGENILDEAKVFAISHLKELSEEKIGKELAEQVSHALELPLHRRTQRLEAVWSIEAYRK 261

Query: 149 K-DANCMLLEFAKLDFNRVQSSYQEEIKNLTRWWEDIDLAKNLKFARDRLMECFIWSVGM 207
           K DAN +LLE A LD+N +QS YQ +++  +RWW  + LA  L FARDRL+E F W+VG+
Sbjct: 262 KEDANQVLLELAILDYNMIQSVYQRDLRETSRWWRRVGLATKLHFARDRLIESFYWAVGV 321

Query: 208 VPKPQYSNCRRALTKVAAFVTIIDYIYAVYGTLDELELFTYAVERWDINAVNDLPNYMKL 267
             +PQYS+CR ++ K+ +FVTIID IY VYGTLDELELFT AVERWD+NA+NDLP+YMKL
Sbjct: 322 AFEPQYSDCRNSVAKMFSFVTIIDDIYDVYGTLDELELFTDAVERWDVNAINDLPDYMKL 381

Query: 268 SFLALYNTINEMAYDILKQHISFPALYNTVNEMAYDILKQHGEIIIPYLTKAWADLCKSF 327
            FLALYNTIN                     E+AYD LK  GE I+PYLTKAWADLC +F
Sbjct: 382 CFLALYNTIN---------------------EIAYDNLKDKGENILPYLTKAWADLCNAF 420

Query: 328 LQEAKWSYNEYTPTFEEYLENAWRSSSGELSLVHSYFLVSRSINKKALESLGKYHNLIRW 387
           LQEAKW YN+ TPTF++Y  NAW+SSSG L L+ +YF V ++I K+ +E+L KYH++I  
Sbjct: 421 LQEAKWLYNKSTPTFDDYFGNAWKSSSGPLQLIFAYFAVVQNIKKEEIENLQKYHDIISR 480

Query: 388 PSTIFRLSNDLATSKI----GKTASSILCYMHETGLSEEIARQHLRNMIDSCWKKMNKEW 443
           PS IFRL NDLA++      G+TA+S+ CYM   G+SEE+A + + N+ID  WKKMNKE 
Sbjct: 481 PSHIFRLCNDLASASAEIARGETANSVSCYMRTKGISEELATESVMNLIDETWKKMNKEK 540

Query: 444 VNDQHPFVEPFVETAFNLARIAQCTYQYGDEHGAPDGRAKKRVV 487
           +     F +PFVETA NLAR + CTY  GD H +PD   +KRV+
Sbjct: 541 LGGS-LFAKPFVETAINLARQSHCTYHNGDAHTSPDELTRKRVL 583
Lyase that catalyzes the formation of isoprene from dimethylallyl diphosphate.
Populus tremuloides (taxid: 3693)
EC: 4EC: .EC: 2EC: .EC: 3EC: .EC: 2EC: 7
>sp|Q50L36|ISPS_POPAL Isoprene synthase, chloroplastic OS=Populus alba GN=ISPS PE=1 SV=1 Back     alignment and function description
>sp|Q9AR86|ISPS_POPCN Isoprene synthase, chloroplastic OS=Populus canescens GN=ISPS PE=1 SV=1 Back     alignment and function description
>sp|Q672F7|TPS2_LOTJA Tricyclene synthase EBOS, chloroplastic OS=Lotus japonicus GN=EBOS PE=1 SV=1 Back     alignment and function description
>sp|Q6EJ97|ISPS_PUEML Isoprene synthase, chloroplastic OS=Pueraria montana var. lobata GN=ISPS PE=1 SV=1 Back     alignment and function description
>sp|Q5UB07|TPS4_MEDTR Tricyclene synthase TPS4, chloroplastic OS=Medicago truncatula GN=TPS4 PE=1 SV=1 Back     alignment and function description
>sp|Q6PWU2|ATESY_VITVI (-)-alpha-terpineol synthase OS=Vitis vinifera PE=1 SV=1 Back     alignment and function description
>sp|B3TPQ7|ATESY_MAGGA Alpha-terpineol synthase, chloroplastic OS=Magnolia grandiflora PE=1 SV=1 Back     alignment and function description
>sp|Q93X23|MYRS_QUEIL Myrcene synthase, chloroplastic OS=Quercus ilex PE=1 SV=1 Back     alignment and function description
>sp|G1JUH1|TPS3_SOLLC (-)-camphene/tricyclene synthase, chloroplastic OS=Solanum lycopersicum GN=TPS3 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query490
225447402 601 PREDICTED: isoprene synthase, chloroplas 0.946 0.772 0.553 1e-163
147814858 601 hypothetical protein VITISV_042691 [Viti 0.946 0.772 0.553 1e-163
313755428579 (E)-beta-ocimene synthase [Vitis vinifer 0.946 0.801 0.538 1e-157
225447404579 PREDICTED: isoprene synthase, chloroplas 0.946 0.801 0.536 1e-156
224093254566 predicted protein [Populus trichocarpa] 0.944 0.818 0.523 1e-152
359485732 602 PREDICTED: LOW QUALITY PROTEIN: isoprene 0.946 0.770 0.535 1e-150
157065146 595 chloroplast isoprene synthase 1 [Populus 0.944 0.778 0.520 1e-147
340804056 595 isoprene synthase [Populus fremontii] gi 0.944 0.778 0.522 1e-146
75232269 595 RecName: Full=Isoprene synthase, chlorop 0.944 0.778 0.520 1e-146
301015975555 Chain A, Crystal Structure Of Isoprene S 0.944 0.834 0.520 1e-146
>gi|225447402|ref|XP_002275444.1| PREDICTED: isoprene synthase, chloroplastic [Vitis vinifera] gi|313755426|gb|ADR74204.1| (E)-beta-ocimene synthase [Vitis vinifera] Back     alignment and taxonomy information
 Score =  580 bits (1494), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 290/524 (55%), Positives = 371/524 (70%), Gaps = 60/524 (11%)

Query: 3   YQRRAKELEEEVKFMINNENGEMLPILELIDDVQRLGLGYRFENEIKRALHRIL------ 56
           Y+ RA++LE+EVK+MI+ ++ E L +LE IDD+QRLGLG+RFEN+IKR+L +IL      
Sbjct: 86  YEDRARKLEDEVKWMIHEKSAEPLTLLEFIDDIQRLGLGHRFENDIKRSLDKILLLEGSN 145

Query: 57  ---------------------------SWQGYDHPEGNFTETVHKDVKGVLSLNEASYLA 89
                                       ++G+    G+F   + KDVKG+LSL EASYLA
Sbjct: 146 AGKGESLHHTALRFRILKQHGYKVSQEVFEGFTDQNGHFKACLCKDVKGMLSLYEASYLA 205

Query: 90  FEGEDILNEALTFSRTHLNQLKTKLNPYMSELVSHSLELPRHYRMRRLEVRWYTEAY-RK 148
            EGE +L+EA+ F + HL  L+  L+  + ELV+H++ELP H RM RLE RW+ EAY R+
Sbjct: 206 SEGETLLHEAMAFLKMHLKDLEGTLDKSLEELVNHAMELPLHRRMPRLEARWFIEAYKRR 265

Query: 149 KDANCMLLEFAKLDFNRVQSSYQEEIKNLTRWWEDIDLAKNLKFARDRLMECFIWSVGMV 208
           + A+ +LLE A LDFN VQ + Q+++++++RWW+D+ LA  L FARDRLMECF W+VGM 
Sbjct: 266 EGADDVLLELAILDFNMVQWTLQDDLQDMSRWWKDMGLASKLHFARDRLMECFFWTVGMA 325

Query: 209 PKPQYSNCRRALTKVAAFVTIIDYIYAVYGTLDELELFTYAVERWDINAVNDLPNYMKLS 268
            +P++SNCR+ LTKV +F+T ID +Y VYG++DELELFT AV RWDIN VN+LP YMKL 
Sbjct: 326 FEPEFSNCRKGLTKVTSFITTIDDVYDVYGSVDELELFTDAVARWDINMVNNLPGYMKLC 385

Query: 269 FLALYNTINEMAYDILKQHISFPALYNTVNEMAYDILKQHGEIIIPYLTKAWADLCKSFL 328
           FLALYNT+NE                     MAYD LK+ G  I+PYLTKAWADLCK FL
Sbjct: 386 FLALYNTVNE---------------------MAYDTLKEQGHNILPYLTKAWADLCKVFL 424

Query: 329 QEAKWSYNEYTPTFEEYLENAWRSSSGELSLVHSYFLVSRSINKKALESLGKYHNLIRWP 388
            EAKW + EYTPTFEEYLEN WRS SG   L+H+YFL+S++I K+ALE L   H L+RWP
Sbjct: 425 VEAKWCHKEYTPTFEEYLENGWRSVSGAAILIHAYFLMSKNITKEALECLENDHELLRWP 484

Query: 389 STIFRLSNDLATSKI----GKTASSILCYMHETGLSEEIARQHLRNMIDSCWKKMNK-EW 443
           STIFRL NDLATSK     G++A+SI CYMH+TG+SEE AR+H++ +ID  WKKMNK   
Sbjct: 485 STIFRLCNDLATSKAELERGESANSISCYMHQTGVSEEDAREHMKILIDESWKKMNKVRE 544

Query: 444 VNDQHPFVEPFVETAFNLARIAQCTYQYGDEHGAPDGRAKKRVV 487
           ++   PF +PFVETA NLARIAQCTYQYGD HGAPD R+KKRV+
Sbjct: 545 MDSDSPFAKPFVETAINLARIAQCTYQYGDSHGAPDARSKKRVL 588

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|147814858|emb|CAN65805.1| hypothetical protein VITISV_042691 [Vitis vinifera] Back     alignment and taxonomy information
>gi|313755428|gb|ADR74205.1| (E)-beta-ocimene synthase [Vitis vinifera] Back     alignment and taxonomy information
>gi|225447404|ref|XP_002281379.1| PREDICTED: isoprene synthase, chloroplastic-like isoform 1 [Vitis vinifera] Back     alignment and taxonomy information
>gi|224093254|ref|XP_002309854.1| predicted protein [Populus trichocarpa] gi|222852757|gb|EEE90304.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|359485732|ref|XP_003633325.1| PREDICTED: LOW QUALITY PROTEIN: isoprene synthase, chloroplastic-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|157065146|gb|ABV04402.1| chloroplast isoprene synthase 1 [Populus alba] Back     alignment and taxonomy information
>gi|340804056|gb|AEK70967.1| isoprene synthase [Populus fremontii] gi|340804062|gb|AEK70970.1| isoprene synthase, partial [Salix sp. DG-2011] Back     alignment and taxonomy information
>gi|75232269|sp|Q7XAS7.1|ISPS_POPTM RecName: Full=Isoprene synthase, chloroplastic; Flags: Precursor gi|33358229|gb|AAQ16588.1| isoprene synthase [Populus tremuloides] Back     alignment and taxonomy information
>gi|301015975|pdb|3N0F|A Chain A, Crystal Structure Of Isoprene Synthase From Grey Poplar Leaves (Populus X Canescens) gi|301015976|pdb|3N0F|B Chain B, Crystal Structure Of Isoprene Synthase From Grey Poplar Leaves (Populus X Canescens) gi|301015977|pdb|3N0G|A Chain A, Crystal Structure Of Isoprene Synthase From Grey Poplar Leaves (Populus X Canescens) In Complex With Three Mg2+ Ions And Dimethylallyl-S-Thiolodiphosphate gi|301015978|pdb|3N0G|B Chain B, Crystal Structure Of Isoprene Synthase From Grey Poplar Leaves (Populus X Canescens) In Complex With Three Mg2+ Ions And Dimethylallyl-S-Thiolodiphosphate Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query490
UNIPROTKB|Q50L36595 ISPS "Isoprene synthase, chlor 0.467 0.384 0.584 4.3e-149
UNIPROTKB|B3TPQ7592 B3TPQ7 "Alpha-terpineol syntha 0.481 0.398 0.516 9.3e-127
UNIPROTKB|Q8GUE4603 GerS "Geraniol synthase, chlor 0.575 0.467 0.425 3.5e-105
UNIPROTKB|Q9SPN1583 QH5 "R-linalool synthase QH5, 0.493 0.415 0.415 3.9e-102
UNIPROTKB|Q8H2B4606 Q8H2B4 "R-linalool synthase, c 0.491 0.397 0.425 1.3e-93
UNIPROTKB|Q9SPN0567 QH1 "R-linalool synthase QH1, 0.444 0.384 0.420 1.5e-85
UNIPROTKB|E2E2P0594 TPS2 "Gamma-terpinene synthase 0.551 0.454 0.387 7.3e-84
UNIPROTKB|Q8L5K4600 Q8L5K4 "Gamma-terpinene syntha 0.846 0.691 0.366 3.6e-78
UNIPROTKB|Q5UB07580 TPS4 "Tricyclene synthase TPS4 0.532 0.45 0.487 3.6e-78
UNIPROTKB|B5A434576 B5A434 "(+)-alpha-terpineol sy 0.816 0.694 0.363 2e-75
UNIPROTKB|Q50L36 ISPS "Isoprene synthase, chloroplastic" [Populus alba (taxid:43335)] Back     alignment and assigned GO terms
 Score = 702 (252.2 bits), Expect = 4.3e-149, Sum P(3) = 4.3e-149
 Identities = 135/231 (58%), Positives = 176/231 (76%)

Query:    57 SWQGYDHPEGNFTETVHKDVKGVLSLNEASYLAFEGEDILNEALTFSRTHLNQL-KTKLN 115
             ++ G+    GNF E + +D+K +LSL EAS+LA EGE+IL+EA  F+ +HL +L + K+ 
Sbjct:   169 AFSGFKDQNGNFLENLKEDIKAILSLYEASFLALEGENILDEAKVFAISHLKELSEEKIG 228

Query:   116 PYMSELVSHSLELPRHYRMRRLEVRWYTEAYRKK-DANCMLLEFAKLDFNRVQSSYQEEI 174
               ++E V+H+LELP H R +RLE  W  EAYRKK DAN +LLE A LD+N +QS YQ ++
Sbjct:   229 KELAEQVNHALELPLHRRTQRLEAVWSIEAYRKKEDANQVLLELAILDYNMIQSVYQRDL 288

Query:   175 KNLTRWWEDIDLAKNLKFARDRLMECFIWSVGMVPKPQYSNCRRALTKVAAFVTIIDYIY 234
             +  +RWW  + LA  L FARDRL+E F W+VG+  +PQYS+CR ++ K+ +FVTIID IY
Sbjct:   289 RETSRWWRRVGLATKLHFARDRLIESFYWAVGVAFEPQYSDCRNSVAKMFSFVTIIDDIY 348

Query:   235 AVYGTLDELELFTYAVERWDINAVNDLPNYMKLSFLALYNTINEMAYDILK 285
              VYGTLDELELFT AVERWD+NA+NDLP+YMKL FLALYNTINE+AYD LK
Sbjct:   349 DVYGTLDELELFTDAVERWDVNAINDLPDYMKLCFLALYNTINEIAYDNLK 399
GO:0000287 "magnesium ion binding" evidence=IDA
GO:0009408 "response to heat" evidence=IEP
GO:0009409 "response to cold" evidence=IEP
GO:0009507 "chloroplast" evidence=IDA
GO:0034009 "isoprene synthase activity" evidence=IDA
GO:0043612 "isoprene biosynthetic process" evidence=IDA
GO:0050993 "dimethylallyl diphosphate metabolic process" evidence=IDA
GO:0071482 "cellular response to light stimulus" evidence=IEP
GO:0071485 "cellular response to absence of light" evidence=IEP
UNIPROTKB|B3TPQ7 B3TPQ7 "Alpha-terpineol synthase, chloroplastic" [Magnolia grandiflora (taxid:3406)] Back     alignment and assigned GO terms
UNIPROTKB|Q8GUE4 GerS "Geraniol synthase, chloroplastic" [Cinnamomum tenuipile (taxid:192326)] Back     alignment and assigned GO terms
UNIPROTKB|Q9SPN1 QH5 "R-linalool synthase QH5, chloroplastic" [Artemisia annua (taxid:35608)] Back     alignment and assigned GO terms
UNIPROTKB|Q8H2B4 Q8H2B4 "R-linalool synthase, chloroplastic" [Mentha aquatica (taxid:190902)] Back     alignment and assigned GO terms
UNIPROTKB|Q9SPN0 QH1 "R-linalool synthase QH1, chloroplastic" [Artemisia annua (taxid:35608)] Back     alignment and assigned GO terms
UNIPROTKB|E2E2P0 TPS2 "Gamma-terpinene synthase, chloroplastic" [Origanum vulgare (taxid:39352)] Back     alignment and assigned GO terms
UNIPROTKB|Q8L5K4 Q8L5K4 "Gamma-terpinene synthase, chloroplastic" [Citrus limon (taxid:2708)] Back     alignment and assigned GO terms
UNIPROTKB|Q5UB07 TPS4 "Tricyclene synthase TPS4, chloroplastic" [Medicago truncatula (taxid:3880)] Back     alignment and assigned GO terms
UNIPROTKB|B5A434 B5A434 "(+)-alpha-terpineol synthase" [Santalum album (taxid:35974)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer4.2.30.921

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query490
cd00684542 cd00684, Terpene_cyclase_plant_C1, Plant Terpene C 0.0
pfam03936270 pfam03936, Terpene_synth_C, Terpene synthase famil 8e-97
cd00868284 cd00868, Terpene_cyclase_C1, Terpene cyclases, Cla 1e-95
PLN02279784 PLN02279, PLN02279, ent-kaur-16-ene synthase 4e-38
pfam01397177 pfam01397, Terpene_synth, Terpene synthase, N-term 4e-36
cd00385243 cd00385, Isoprenoid_Biosyn_C1, Isoprenoid Biosynth 1e-28
PLN02592800 PLN02592, PLN02592, ent-copalyl diphosphate syntha 5e-17
>gnl|CDD|173832 cd00684, Terpene_cyclase_plant_C1, Plant Terpene Cyclases, Class 1 Back     alignment and domain information 
 Score =  524 bits (1353), Expect = 0.0
 Identities = 220/531 (41%), Positives = 310/531 (58%), Gaps = 65/531 (12%)

Query: 1   DKYQRRAKELEEEVKFMINNENGEMLPI--LELIDDVQRLGLGYRFENEIKRALH----- 53
           D+ +   +EL+EEV+ M+ +    +     L LID +QRLG+ Y FE+EIK  L      
Sbjct: 27  DELEEEIEELKEEVRKMLEDSEYPVDLFERLWLIDRLQRLGISYHFEDEIKEILDYIYRY 86

Query: 54  -------------------RILSWQGYDHP----------EGNFTETVHKDVKGVLSLNE 84
                              R+L   GY+            +G F E++ +DVKG+LSL E
Sbjct: 87  WTERGESNEDDLYTTALGFRLLRQHGYNVSSDVFKKFKDEDGKFKESLTQDVKGMLSLYE 146

Query: 85  ASYLAFEGEDILNEALTFSRTHLNQL---KTKLNPYMSELVSHSLELPRHYRMRRLEVRW 141
           AS+L+F GEDIL+EAL+F+  HL +       ++P +S  + ++LE+P H  + RLE RW
Sbjct: 147 ASHLSFPGEDILDEALSFTTKHLEEKLESNWIIDPDLSGEIEYALEIPLHASLPRLEARW 206

Query: 142 YTEAYRKK-DANCMLLEFAKLDFNRVQSSYQEEIKNLTRWWEDIDLAKNLKFARDRLMEC 200
           Y E Y ++ D N  LLE AKLDFN +Q+ +QEE+K L+RWW+D+DLA  L FARDRL+EC
Sbjct: 207 YIEFYEQEDDHNETLLELAKLDFNILQALHQEELKILSRWWKDLDLASKLPFARDRLVEC 266

Query: 201 FIWSVGMVPKPQYSNCRRALTKVAAFVTIIDYIYAVYGTLDELELFTYAVERWDINAVND 260
           + W+ G   +PQYS  R AL K  A +T+ID  Y VYGTL+ELELFT AVERWDI+A++ 
Sbjct: 267 YFWAAGTYFEPQYSLARIALAKTIALITVIDDTYDVYGTLEELELFTEAVERWDISAIDQ 326

Query: 261 LPNYMKLSFLALYNTINEMAYDILKQHISFPALYNTVNEMAYDILKQHGEIIIPYLTKAW 320
           LP YMK+ F AL NT+NE+  ++LK+  S+                     ++PYL +AW
Sbjct: 327 LPEYMKIVFKALLNTVNEIEEELLKEGGSY---------------------VVPYLKEAW 365

Query: 321 ADLCKSFLQEAKWSYNEYTPTFEEYLENAWRSSSGELSLVHSYFLVSRSINKKALESLGK 380
            DL K++L EAKW++  Y PTFEEY+ENA  S      L+ S+  +   + ++A E L  
Sbjct: 366 KDLVKAYLVEAKWAHEGYVPTFEEYMENALVSIGLGPLLLTSFLGMGDILTEEAFEWLES 425

Query: 381 YHNLIRWPSTIFRLSNDLATSK----IGKTASSILCYMHETGLSEEIARQHLRNMIDSCW 436
              L+R  STI RL ND+AT +     G  ASSI CYM E G+SEE AR+ ++ MI+  W
Sbjct: 426 RPKLVRASSTIGRLMNDIATYEDEMKRGDVASSIECYMKEYGVSEEEAREEIKKMIEDAW 485

Query: 437 KKMNKEWVNDQHPFVEPFVETAFNLARIAQCTYQYGDEHGAPDGRAKKRVV 487
           K++N+E++        P  +   NLAR+    Y+ GD    P+G  K  + 
Sbjct: 486 KELNEEFLKPSSDVPRPIKQRFLNLARVIDVFYKEGDGFTHPEGEIKDHIT 536

This CD includes a diverse group of monomeric plant terpene cyclases (Tspa-Tspf) that convert the acyclic isoprenoid diphosphates, geranyl diphosphate (GPP), farnesyl diphosphate (FPP), or geranylgeranyl diphosphate (GGPP) into cyclic monoterpenes, diterpenes, or sesquiterpenes, respectively; a few form acyclic species. Terpnoid cyclases are soluble enzymes localized to the cytosol (sesquiterpene synthases) or plastids (mono- and diterpene synthases). All monoterpene and diterpene synthases have restrict substrate specificity, however, some sesquiterpene synthases can accept both FPP and GPP. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions located on opposite walls. These residues mediate binding of prenyl diphosphates, via bridging Mg2+ ions (K+ preferred by gymnosperm cyclases), inducing conformational changes such that an N-terminal region forms a cap over the catalytic core. Loss of diphosphate from the enzyme-bound substrate (GPP, FPP, or GGPP) results in an allylic carbocation that electrophilically attacks a double bond further down the terpene chain to effect the first ring closure. Unlike monoterpene, sesquiterene, and macrocyclic diterpenes synthases, which undergo substrate ionization by diphosphate ester scission, Tpsc-like diterpene synthases catalyze cyclization reactions by an initial protonation step producing a copalyl diphosphate intermediate. These enzymes lack the aspartate-rich sequences mentioned above. Most diterpene synthases have an N-terminal, internal element (approx 210 aa) whose function is unknown. Length = 542
>gnl|CDD|202816 pfam03936, Terpene_synth_C, Terpene synthase family, metal binding domain Back     alignment and domain information
>gnl|CDD|173837 cd00868, Terpene_cyclase_C1, Terpene cyclases, Class 1 Back     alignment and domain information
>gnl|CDD|177918 PLN02279, PLN02279, ent-kaur-16-ene synthase Back     alignment and domain information
>gnl|CDD|216477 pfam01397, Terpene_synth, Terpene synthase, N-terminal domain Back     alignment and domain information
>gnl|CDD|173830 cd00385, Isoprenoid_Biosyn_C1, Isoprenoid Biosynthesis enzymes, Class 1 Back     alignment and domain information
>gnl|CDD|215321 PLN02592, PLN02592, ent-copalyl diphosphate synthase Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 490
cd00684542 Terpene_cyclase_plant_C1 Plant Terpene Cyclases, C 100.0
PLN02279784 ent-kaur-16-ene synthase 100.0
PLN02592800 ent-copalyl diphosphate synthase 100.0
PF03936270 Terpene_synth_C: Terpene synthase family, metal bi 100.0
cd00868284 Terpene_cyclase_C1 Terpene cyclases, Class 1. Terp 100.0
PF01397183 Terpene_synth: Terpene synthase, N-terminal domain 100.0
cd00687303 Terpene_cyclase_nonplant_C1 Non-plant Terpene Cycl 99.98
PLN0215096 terpene synthase/cyclase family protein 99.95
cd00385243 Isoprenoid_Biosyn_C1 Isoprenoid Biosynthesis enzym 99.81
PF06330376 TRI5: Trichodiene synthase (TRI5); InterPro: IPR02 97.07
cd00686357 Terpene_cyclase_cis_trans_C1 Cis, Trans, Terpene C 96.52
PF00494267 SQS_PSY: Squalene/phytoene synthase; InterPro: IPR 94.45
TIGR03464266 HpnC squalene synthase HpnC. This family of genes 92.47
TIGR03465266 HpnD squalene synthase HpnD. The genes of this fam 92.22
cd00683265 Trans_IPPS_HH Trans-Isoprenyl Diphosphate Synthase 90.8
>cd00684 Terpene_cyclase_plant_C1 Plant Terpene Cyclases, Class 1 Back     alignment and domain information 
Probab=100.00  E-value=9.1e-132  Score=1076.15  Aligned_cols=467  Identities=47%  Similarity=0.786  Sum_probs=452.1

Q ss_pred             hHHHHHHHHHHHHHHHHhhc--cCCccchhhhHHHHHhcCCccccHHHHHHHHHhchhcC--------------------
Q 045043            2 KYQRRAKELEEEVKFMINNE--NGEMLPILELIDDVQRLGLGYRFENEIKRALHRILSWQ--------------------   59 (490)
Q Consensus         2 ~~~~~~~~lk~~v~~~l~~~--~~d~~~~l~liD~lqrLGi~~hF~~EI~~~L~~i~~~~--------------------   59 (490)
                      .+.+++++||++||+||...  ..|++++|++||+||||||||||++||+++|++||+.+                    
T Consensus        28 ~~~~~~~~lk~~v~~~~~~~~~~~~~~~~l~liD~lqrLGi~~hF~~EI~~~L~~i~~~~~~~~~~~~~dl~~~al~FRl  107 (542)
T cd00684          28 ELEEEIEELKEEVRKMLEDSEYPVDLFERLWLIDRLQRLGISYHFEDEIKEILDYIYRYWTERGESNEDDLYTTALGFRL  107 (542)
T ss_pred             HHHHHHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHHHHhhcccccccCCCHHHHHHHHHH
Confidence            36789999999999999863  33899999999999999999999999999999999732                    


Q ss_pred             ----cccc----------CCCccccccchhhHHHHHHHhhccCCCCCcchHHHHHHHHHHHHHHHhhc---cCCChhhHh
Q 045043           60 ----GYDH----------PEGNFTETVHKDVKGVLSLNEASYLAFEGEDILNEALTFSRTHLNQLKTK---LNPYMSELV  122 (490)
Q Consensus        60 ----Gy~v----------~~g~F~~~~~~dv~~llsLyeAs~l~~~gE~iLdeA~~fs~~~L~~~~~~---~~~~l~~~V  122 (490)
                          ||+|          ++|+|++++.+||+||||||||||++||||+|||||++||++||+++++.   ++++|+++|
T Consensus       108 LR~~Gy~vs~dvf~~F~~~~g~f~~~~~~d~~g~l~Ly~As~l~~~gE~iLdeA~~ft~~~L~~~~~~~~~~~~~l~~~V  187 (542)
T cd00684         108 LRQHGYNVSSDVFKKFKDEDGKFKESLTQDVKGMLSLYEASHLSFPGEDILDEALSFTTKHLEEKLESNWIIDPDLSGEI  187 (542)
T ss_pred             HHHcCCCcCHHHHhhhcCCCCCcCchhhhhhHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHHHHhhccCCCCchHHHHH
Confidence                9999          66999999999999999999999999999999999999999999999976   789999999


Q ss_pred             hhhccccccccchhhHHHHHHHHhc-ccCCChHHHHHHhhhhHHHHhhhHHHHHHHHHHHhhhCccccchhhhhhHHHHH
Q 045043          123 SHSLELPRHYRMRRLEVRWYTEAYR-KKDANCMLLEFAKLDFNRVQSSYQEEIKNLTRWWEDIDLAKNLKFARDRLMECF  201 (490)
Q Consensus       123 ~~aL~~P~~~~~~Rle~r~yi~~Y~-~~~~n~~lLelAKldFn~~Q~~hq~El~~lsrWw~~~~L~~~l~faRdr~~e~y  201 (490)
                      ++||++|||+++||||||+||++|+ ++++|++||||||+|||+||++||+||++++|||+++||.+++||+|+|+++||
T Consensus       188 ~~aL~~P~~~~~~rlear~yi~~Y~~~~~~n~~lLelAkldfn~~Q~~hq~El~~~~rWwk~~gL~~~l~~aRdr~ve~y  267 (542)
T cd00684         188 EYALEIPLHASLPRLEARWYIEFYEQEDDHNETLLELAKLDFNILQALHQEELKILSRWWKDLDLASKLPFARDRLVECY  267 (542)
T ss_pred             HHHccCchhcCCchHHHHHHHHHhCCCccccHHHHHHHHHHHHHHhHhHHHHHHHHhHHHHhcCCcccCCcccchhHHHH
Confidence            9999999999999999999999999 889999999999999999999999999999999999999888899999999999


Q ss_pred             HHHhccccCCCCchHHHHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHhhhcCcccccCCChhHHHHHHHHHHHHHHHHH
Q 045043          202 IWSVGMVPKPQYSNCRRALTKVAAFVTIIDYIYAVYGTLDELELFTYAVERWDINAVNDLPNYMKLSFLALYNTINEMAY  281 (490)
Q Consensus       202 fw~~a~~feP~~s~~Rl~~aK~~~l~~iiDD~yD~~gt~eEl~~ft~av~rWd~~~~~~lPe~mk~~~~al~~~~~e~~~  281 (490)
                      ||++|++|||++|.+|+++||+++|++++||+||+|||++|++.||+||+|||.++++++|+|||+||.+|+++++++  
T Consensus       268 f~~~a~~feP~~s~~Rl~~aK~~~l~~~iDD~fD~~gt~eEl~~ft~ai~rwd~~~~~~lPe~mk~~~~al~~~~~ei--  345 (542)
T cd00684         268 FWAAGTYFEPQYSLARIALAKTIALITVIDDTYDVYGTLEELELFTEAVERWDISAIDQLPEYMKIVFKALLNTVNEI--  345 (542)
T ss_pred             HHHHhcccCccchHHHHHHHHHHHHHhhhHhhhccCCCHHHHHHHHHHHHhccccchhhccHHHHHHHHHHHHHHHHH--
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999999999  


Q ss_pred             HHhhhcccchhhhhhhhHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHhhcccccchhHHHHH
Q 045043          282 DILKQHISFPALYNTVNEMAYDILKQHGEIIIPYLTKAWADLCKSFLQEAKWSYNEYTPTFEEYLENAWRSSSGELSLVH  361 (490)
Q Consensus       282 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lke~w~~~~~a~l~EAkW~~~g~vPs~eEYl~~~~~Ssg~~~ll~~  361 (490)
                                         +.++.+++|+++.++++++|+++++||++||+|+++|++||++|||++|.+|+|+++++++
T Consensus       346 -------------------~~~~~~~~~~~~~~~~~~~~~~~~~a~l~EA~w~~~g~vPt~eEYl~~~~~S~g~~~~~~~  406 (542)
T cd00684         346 -------------------EEELLKEGGSYVVPYLKEAWKDLVKAYLVEAKWAHEGYVPTFEEYMENALVSIGLGPLLLT  406 (542)
T ss_pred             -------------------HHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHhhhhHHhhHHHHHHH
Confidence                               9999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhcCCCcHHHHHhhhchhhhHHHHHHHHHHhhcccccc----cCCCcchhhhhhhcCCCCHHHHHHHHHHHHHHHHH
Q 045043          362 SYFLVSRSINKKALESLGKYHNLIRWPSTIFRLSNDLATSK----IGKTASSILCYMHETGLSEEIARQHLRNMIDSCWK  437 (490)
Q Consensus       362 ~~~~~g~~l~~e~~e~~~~~p~ii~~s~~i~RL~NDI~S~k----rG~~~n~V~cyMke~gvS~EeA~~~i~~~i~~~wk  437 (490)
                      ++++||+.+|+++++|+..+|+++++++.++||+|||+|++    +|+++|+|.|||+|+|+|+|+|+++++++|+++||
T Consensus       407 ~~~~~g~~l~~e~~e~~~~~~~l~~~~~~i~rL~NDi~S~~kE~~rGdv~n~V~~ymke~g~s~eeA~~~i~~~ie~~wk  486 (542)
T cd00684         407 SFLGMGDILTEEAFEWLESRPKLVRASSTIGRLMNDIATYEDEMKRGDVASSIECYMKEYGVSEEEAREEIKKMIEDAWK  486 (542)
T ss_pred             HHHhcCCCCCHHHHHHHhccHHHHHHHHHHHHHhcChhhhHHHHhcCCcccHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence            99999999999999999888999999999999999999999    99999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCCCCcHHHHHHHHHHhhhhchhcccCCCCCCCChhHHHHhhhc
Q 045043          438 KMNKEWVNDQHPFVEPFVETAFNLARIAQCTYQYGDEHGAPDGRAKKRVVIS  489 (490)
Q Consensus       438 ~ln~e~l~~~~~~p~~~~~~~~n~aR~~~~~Y~~~D~~t~~~~~~k~~i~~~  489 (490)
                      +||++++++++++|++|+++++|+||+++++|+++||||.|++.+|++|+++
T Consensus       487 ~ln~e~l~~~~~~p~~~~~~~~n~~r~~~~~Y~~~D~~t~~~~~~~~~i~~l  538 (542)
T cd00684         487 ELNEEFLKPSSDVPRPIKQRFLNLARVIDVFYKEGDGFTHPEGEIKDHITSL  538 (542)
T ss_pred             HHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCCccHHHHHHHHHH
Confidence            9999999983389999999999999999999999999999988899999986

This CD includes a diverse group of monomeric plant terpene cyclases (Tspa-Tspf) that convert the acyclic isoprenoid diphosphates, geranyl diphosphate (GPP), farnesyl diphosphate (FPP), or geranylgeranyl diphosphate (GGPP) into cyclic monoterpenes, diterpenes, or sesquiterpenes, respectively; a few form acyclic species. Terpnoid cyclases are soluble enzymes localized to the cytosol (sesquiterpene synthases) or plastids (mono- and diterpene synthases). All monoterpene and diterpene synthases have restrict substrate specificity, however, some sesquiterpene synthases can accept both FPP and GPP. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions located on opposite walls. These residues mediate binding of prenyl diphosphates, via bridging Mg2+ ions (K+ preferred by gymnosperm cyclases), inducing conformational changes such that an N-terminal regi
>PLN02279 ent-kaur-16-ene synthase Back     alignment and domain information
>PLN02592 ent-copalyl diphosphate synthase Back     alignment and domain information
>PF03936 Terpene_synth_C: Terpene synthase family, metal binding domain; InterPro: IPR005630 Sequences containing this domain belong to the terpene synthase family Back     alignment and domain information
>cd00868 Terpene_cyclase_C1 Terpene cyclases, Class 1 Back     alignment and domain information
>PF01397 Terpene_synth: Terpene synthase, N-terminal domain; InterPro: IPR001906 Sequences containing this domain belong to the terpene synthase family Back     alignment and domain information
>cd00687 Terpene_cyclase_nonplant_C1 Non-plant Terpene Cyclases, Class 1 Back     alignment and domain information
>PLN02150 terpene synthase/cyclase family protein Back     alignment and domain information
>cd00385 Isoprenoid_Biosyn_C1 Isoprenoid Biosynthesis enzymes, Class 1 Back     alignment and domain information
>PF06330 TRI5: Trichodiene synthase (TRI5); InterPro: IPR024652 This family consists of several fungal trichodiene synthase proteins (EC:4 Back     alignment and domain information
>cd00686 Terpene_cyclase_cis_trans_C1 Cis, Trans, Terpene Cyclases, Class 1 Back     alignment and domain information
>PF00494 SQS_PSY: Squalene/phytoene synthase; InterPro: IPR002060 Squalene synthase 2 Back     alignment and domain information
>TIGR03464 HpnC squalene synthase HpnC Back     alignment and domain information
>TIGR03465 HpnD squalene synthase HpnD Back     alignment and domain information
>cd00683 Trans_IPPS_HH Trans-Isoprenyl Diphosphate Synthases, head-to-head Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query490
3n0f_A555 Crystal Structure Of Isoprene Synthase From Grey Po 1e-149
2ong_A543 Crystal Structure Of Of Limonene Synthase With 2- F 1e-97
2j5c_A569 Rational Conversion Of Substrate And Product Specif 8e-91
1n1b_A549 Crystal Structure Of (+)-bornyl Diphosphate Synthas 3e-79
3g4d_A554 Crystal Structure Of (+)-Delta-Cadinene Synthase Fr 9e-70
1hxc_A548 Crystal Structure Of Teas C440w Length = 548 8e-67
5eau_A548 5-Epi-Aristolochene Synthase From Nicotiana Tabacum 1e-66
3m01_A550 The Crystal Structure Of 5-Epi-Aristolochene Syntha 1e-66
3lz9_A550 The Crystal Structure Of 5-Epi-Aristolochene Syntha 1e-66
4di5_A535 Co-Crystal Structure Of Wt 5-Epi-Aristolochene Synt 1e-66
5eas_A548 5-Epi-Aristolochene Synthase From Nicotiana Tabacum 2e-66
5eat_A548 5-Epi-Aristolochene Synthase From Nicotiana Tabacum 2e-66
1hxg_A548 Crystal Structure Of Teas W273sC440W Length = 548 3e-65
1hx9_A548 Crystal Structure Of Teas W273s Form 1 Length = 548 4e-65
3s9v_A785 Abietadiene Synthase From Abies Grandis Length = 78 2e-55
3sae_A817 Structure Of A Three-Domain Sesquiterpene Synthase: 5e-55
3p5p_A764 Crystal Structure Of Taxadiene Synthase From Pacifi 5e-46
3pya_A727 Crystal Structure Of Ent-Copalyl Diphosphate Syntha 8e-10
>pdb|3N0F|A Chain A, Crystal Structure Of Isoprene Synthase From Grey Poplar Leaves (Populus X Canescens) Length = 555 Back     alignment and structure 
Iteration: 1

 Score =  525 bits (1352), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 273/524 (52%), Positives = 352/524 (67%), Gaps = 61/524 (11%)
Query: 3   YQRRAKELEEEVKFMINNENGEMLPILELIDDVQRLGLGYRFENEIKRALHRILSWQGYD 62
           Y+ +AK+LE EV+  INNE  E L +LELID+VQRLGLGYRFE++I+RAL R +S  G+D
Sbjct: 42  YKDKAKKLEAEVRREINNEKAEFLTLLELIDNVQRLGLGYRFESDIRRALDRFVSSGGFD 101
Query: 63  ---------------------------------HPEGNFTETVHKDVKGVLSLNEASYLA 89
                                               GNF E + +D K +LSL EAS+LA
Sbjct: 102 GVTKTSLHATALSFRLLRQHGFEVSQEAFSGFKDQNGNFLENLKEDTKAILSLYEASFLA 161
Query: 90  FEGEDILNEALTFSRTHLNQL-KTKLNPYMSELVSHSLELPRHYRMRRLEVRWYTEAYRK 148
            EGE+IL+EA  F+ +HL +L + K+   ++E V+H+LELP H R +RLE  W  EAYRK
Sbjct: 162 LEGENILDEARVFAISHLKELSEEKIGKELAEQVNHALELPLHRRTQRLEAVWSIEAYRK 221
Query: 149 K-DANCMLLEFAKLDFNRVQSSYQEEIKNLTRWWEDIDLAKNLKFARDRLMECFIWSVGM 207
           K DAN +LLE A LD+N +QS YQ +++  +RWW  + LA  L FARDRL+E F W+VG+
Sbjct: 222 KEDANQVLLELAILDYNMIQSVYQRDLRETSRWWRRVGLATKLHFARDRLIESFYWAVGV 281
Query: 208 VPKPQYSNCRRALTKVAAFVTIIDYIYAVYGTLDELELFTYAVERWDINAVNDLPNYMKL 267
             +PQYS+CR ++ K+ +FVTIID IY VYGTLDELELFT AVERWD+NA+NDLP+YMKL
Sbjct: 282 AFEPQYSDCRNSVAKMFSFVTIIDDIYDVYGTLDELELFTDAVERWDVNAINDLPDYMKL 341
Query: 268 SFLALYNTINEMAYDILKQHISFPALYNTVNEMAYDILKQHGEIIIPYLTKAWADLCKSF 327
            FLALYNTIN                     E+AYD LK  GE I+PYLTKAWADLC +F
Sbjct: 342 CFLALYNTIN---------------------EIAYDNLKDKGENILPYLTKAWADLCNAF 380
Query: 328 LQEAKWSYNEYTPTFEEYLENAWRSSSGELSLVHSYFLVSRSINKKALESLGKYHNLIRW 387
           LQEAKW YN+ TPTF++Y  NAW+SSSG L L+ +YF V ++I K+ +E+L KYH++I  
Sbjct: 381 LQEAKWLYNKSTPTFDDYFGNAWKSSSGPLQLIFAYFAVVQNIKKEEIENLQKYHDIISR 440
Query: 388 PSTIFRLSNDLATSKI----GKTASSILCYMHETGLSEEIARQHLRNMIDSCWKKMNKEW 443
           PS IFRL NDLA++      G+TA+S+ CYM   G+SEE+A + + N+ID  WKKMNKE 
Sbjct: 441 PSHIFRLCNDLASASAEIARGETANSVSCYMRTKGISEELATESVMNLIDETWKKMNKEK 500
Query: 444 VNDQHPFVEPFVETAFNLARIAQCTYQYGDEHGAPDGRAKKRVV 487
           +     F +PFVETA NLAR + CTY  GD H +PD   +KRV+
Sbjct: 501 LGGS-LFAKPFVETAINLARQSHCTYHNGDAHTSPDELTRKRVL 543
>pdb|2ONG|A Chain A, Crystal Structure Of Of Limonene Synthase With 2- Fluorogeranyl Diphosphate (Fgpp). Length = 543 Back     alignment and structure
>pdb|2J5C|A Chain A, Rational Conversion Of Substrate And Product Specificity In A Monoterpene Synthase. Structural Insights Into The Molecular Basis Of Rapid Evolution. Length = 569 Back     alignment and structure
>pdb|1N1B|A Chain A, Crystal Structure Of (+)-bornyl Diphosphate Synthase From Sage Length = 549 Back     alignment and structure
>pdb|3G4D|A Chain A, Crystal Structure Of (+)-Delta-Cadinene Synthase From Gossypium Arboreum And Evolutionary Divergence Of Metal Binding Motifs For Catalysis Length = 554 Back     alignment and structure
>pdb|1HXC|A Chain A, Crystal Structure Of Teas C440w Length = 548 Back     alignment and structure
>pdb|5EAU|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum Length = 548 Back     alignment and structure
>pdb|3M01|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase Complexed With (2-Trans,6-Trans)-2-Fluorofarnesyl Diphosphate Length = 550 Back     alignment and structure
>pdb|3LZ9|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase M4 Mut Complexed With (2-Trans,6-Trans)-2-Fluorofarnesyl Diphospha Length = 550 Back     alignment and structure
>pdb|4DI5|A Chain A, Co-Crystal Structure Of Wt 5-Epi-Aristolochene Synthase From Nicotiana Tobaccum With Geraniline Length = 535 Back     alignment and structure
>pdb|5EAS|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum Length = 548 Back     alignment and structure
>pdb|5EAT|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum With Substrate Analog Farnesyl Hydroxyphosphonate Length = 548 Back     alignment and structure
>pdb|1HXG|A Chain A, Crystal Structure Of Teas W273sC440W Length = 548 Back     alignment and structure
>pdb|1HX9|A Chain A, Crystal Structure Of Teas W273s Form 1 Length = 548 Back     alignment and structure
>pdb|3S9V|A Chain A, Abietadiene Synthase From Abies Grandis Length = 785 Back     alignment and structure
>pdb|3SAE|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A Prospective Target For Advanced Biofuels Production Length = 817 Back     alignment and structure
>pdb|3P5P|A Chain A, Crystal Structure Of Taxadiene Synthase From Pacific Yew (Taxus Brevifolia) In Complex With Mg2+ And 13-Aza-13,14-Dihydrocopalyl Diphosphate Length = 764 Back     alignment and structure
>pdb|3PYA|A Chain A, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From Arabidopsis Thaliana In Complex With (S)-15-Aza-14,15-Dihydrogeranylgeranyl Thiolodiphosphate Length = 727 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query490
3g4d_A554 (+)-delta-cadinene synthase isozyme XC1; cyclase, 1e-137
2j5c_A569 1,8-cineole synthase; terpene synthases, 1, monote 1e-137
2ong_A543 4S-limonene synthase; monoterpene synthase, monote 1e-136
3m00_A550 Aristolochene synthase; plant terpenoid cyclase, l 1e-135
3n0f_A555 Isoprene synthase; terpene cyclase fold, hemiterpe 1e-135
1n1b_A549 (+)-bornyl diphosphate synthase; terpene synthase 1e-129
3p5p_A764 Taxadiene synthase; class I and II terpene cyclase 1e-120
3s9v_A785 Abietadiene synthase, chloroplastic; alpha bundle/ 1e-119
3sdr_A817 Alpha-bisabolene synthase; lyase, terpene synthase 1e-111
3pya_A727 ENT-copalyl diphosphate synthase, chloroplastic; c 3e-83
1ps1_A337 Pentalenene synthase; antibiotic biosynthesis, ses 2e-25
3kb9_A382 EPI-isozizaene synthase; terpenoid cyclase, alpha- 2e-25
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-07
3bny_A320 Aristolochene synthase; sesquiterpene cyclase, iso 8e-07
1di1_A300 Aristolochene synthase; sesquiterpene cyclase, iso 2e-04
>3g4d_A (+)-delta-cadinene synthase isozyme XC1; cyclase, lyase, magnesium, metal-binding; 2.40A {Gossypium arboreum} PDB: 3g4f_A* Length = 554 Back     alignment and structure
 Score =  407 bits (1046), Expect = e-137
 Identities = 160/521 (30%), Positives = 254/521 (48%), Gaps = 57/521 (10%)

Query: 1   DKYQRRAKELEEEVKFMINNENGEMLPILELIDDVQRLGLGYRFENEIKRALHRILSW-- 58
            + ++R ++L+EEV+ MI          L  ID VQRLG+ Y F  EI+  L  I     
Sbjct: 46  AETEKRHQQLKEEVRKMIVAPMANSTQKLAFIDSVQRLGVSYHFTKEIEDELENIYHNNN 105

Query: 59  ------------------QGYDHP----------EGNFTETVHKDVKGVLSLNEASYLAF 90
                              GY+            +GNF  +V  DV+G+L L +ASYL  
Sbjct: 106 DAENDLYTTSIRFRLLREHGYNVSCDVFNKFKDEQGNFKSSVTSDVRGLLELYQASYLRV 165

Query: 91  EGEDILNEALTFSRTHLNQLKTKLNPYMSELVSHSLELPRHYRMRRLEVRWYTEAYRKK- 149
            GEDIL+EA++F+  HL+     L+  +SE VSH+L+      + R+E R Y   Y+   
Sbjct: 166 HGEDILDEAISFTTHHLSLAVASLDHPLSEEVSHALKQSIRRGLPRVEARHYLSVYQDIE 225

Query: 150 DANCMLLEFAKLDFNRVQSSYQEEIKNLTRWWEDIDLAKNLKFARDRLMECFIWSVGMVP 209
             N  LLEFAK+DFN +Q  +++E+  + RWW+D+D  + L +ARDR++E + W  G+  
Sbjct: 226 SHNKALLEFAKIDFNMLQFLHRKELSEICRWWKDLDFQRKLPYARDRVVEGYFWISGVYF 285

Query: 210 KPQYSNCRRALTKVAAFVTIIDYIYAVYGTLDELELFTYAVERWDINAVNDLPNYMKLSF 269
           +PQYS  R+ LTKV A  +I+D  Y  Y T +EL  +T A+ERWDI  ++++P YMK   
Sbjct: 286 EPQYSLGRKMLTKVIAMASIVDDTYDSYATYEELIPYTNAIERWDIKCIDEIPEYMK--- 342

Query: 270 LALYNTINEMAYDILKQHISFPALYNTVNEMAYDILKQHGEIIIPYLTKAWADLCKSFLQ 329
                              S+ AL +   EM   + +   +  + Y   A   L +S+L 
Sbjct: 343 ------------------PSYKALLDVYEEMVQLVAEHGRQYRVEYAKNAMIRLAQSYLV 384

Query: 330 EAKWSYNEYTPTFEEYLENAWRSSSGELSLVHSYFLVSRSINKKALESLGKYHNLIRWPS 389
           EAKW+   Y P+FEE+  NA  +    +  + S+  +   +  +  +       +I+  +
Sbjct: 385 EAKWTLQNYKPSFEEFKANALPTCGYAMLAITSFVGMGDIVTPETFKWAASDPKIIQAST 444

Query: 390 TIFRLSNDLATS----KIGKTASSILCYMHETGLSEEIARQHLRNMIDSCWKKMNKEWVN 445
            I R  +D+A      +     S+I CYM E G++ + A       ++S WK +N+E++ 
Sbjct: 445 IICRFMDDVAEHKFKHRREDDCSAIECYMEEYGVTAQEAYDVFNKHVESAWKDLNQEFLK 504

Query: 446 DQHPFVEPFVETAFNLARIAQCTYQYGDEHGAPDGRAKKRV 486
                    +  + NLAR+    Y+ GD +      AK  +
Sbjct: 505 -PTEMPTEVLNRSLNLARVMDVLYREGDGYTYVGKAAKGGI 544
>2j5c_A 1,8-cineole synthase; terpene synthases, 1, monoterpene, lyase; 1.95A {Salvia fruticosa} Length = 569 Back     alignment and structure
>2ong_A 4S-limonene synthase; monoterpene synthase, monoterpene cyclase, geranyl diphosphate, 2 fluorogeranyl diphosphate linalyl diphosphate; HET: FPG BTB; 2.70A {Mentha spicata} PDB: 2onh_A* Length = 543 Back     alignment and structure
>3m00_A Aristolochene synthase; plant terpenoid cyclase, lyase binding domain, (2-CIS, 6-trans)-2-fluorofarnesyl diphospha magnesium, metal-binding; HET: 2CF; 2.10A {Nicotiana tabacum} PDB: 3lz9_A* 3m02_A* 3m01_A* 5eau_A* 1hxa_A* 1hx9_A* 1hxc_A* 5eas_A 1hxg_A 4di5_A* 5eat_A* Length = 550 Back     alignment and structure
>3n0f_A Isoprene synthase; terpene cyclase fold, hemiterpene synthase, DDXXD motif, NSE motif, lyase; 2.70A {Populus tremula x populus alba} PDB: 3n0g_A* Length = 555 Back     alignment and structure
>1n1b_A (+)-bornyl diphosphate synthase; terpene synthase fold, isomerase; 2.00A {Salvia officinalis} SCOP: a.102.4.1 a.128.1.3 PDB: 1n1z_A* 1n20_A* 1n21_A* 1n22_A* 1n23_A* 1n24_A* Length = 549 Back     alignment and structure
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A* Length = 764 Back     alignment and structure
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis} Length = 785 Back     alignment and structure
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A* Length = 817 Back     alignment and structure
>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A* Length = 727 Back     alignment and structure
>1ps1_A Pentalenene synthase; antibiotic biosynthesis, sesquiterpene cyclase, lyase; 2.60A {Streptomyces SP} SCOP: a.128.1.4 PDB: 1hm7_A 1hm4_A Length = 337 Back     alignment and structure
>3kb9_A EPI-isozizaene synthase; terpenoid cyclase, alpha-helical fold, farnesyl diphosphate, metal-binding, lyase, magnesium; HET: BTM; 1.60A {Streptomyces coelicolor} PDB: 3kbk_A 3lgk_A 3lg5_A* Length = 382 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3bny_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid, farnesyl diphosphate, magnesium, cyclization, lyase; HET: FPF; 1.89A {Aspergillus terreus} PDB: 2e4o_A 2oa6_A* 3bnx_A* 3cke_A* Length = 320 Back     alignment and structure
>1di1_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid biosynthesis, lyase; 2.50A {Penicillium roqueforti} SCOP: a.128.1.4 PDB: 1dgp_A Length = 300 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query490
3g4d_A554 (+)-delta-cadinene synthase isozyme XC1; cyclase, 100.0
3n0f_A555 Isoprene synthase; terpene cyclase fold, hemiterpe 100.0
3m00_A550 Aristolochene synthase; plant terpenoid cyclase, l 100.0
2ong_A543 4S-limonene synthase; monoterpene synthase, monote 100.0
1n1b_A549 (+)-bornyl diphosphate synthase; terpene synthase 100.0
2j5c_A569 1,8-cineole synthase; terpene synthases, 1, monote 100.0
3sdr_A817 Alpha-bisabolene synthase; lyase, terpene synthase 100.0
3s9v_A785 Abietadiene synthase, chloroplastic; alpha bundle/ 100.0
3p5p_A764 Taxadiene synthase; class I and II terpene cyclase 100.0
3pya_A727 ENT-copalyl diphosphate synthase, chloroplastic; c 100.0
1ps1_A337 Pentalenene synthase; antibiotic biosynthesis, ses 100.0
1di1_A300 Aristolochene synthase; sesquiterpene cyclase, iso 100.0
3bny_A320 Aristolochene synthase; sesquiterpene cyclase, iso 100.0
3kb9_A382 EPI-isozizaene synthase; terpenoid cyclase, alpha- 100.0
3v1v_A433 2-MIB synthase, 2-methylisoborneol synthase; class 99.97
1yyq_A374 Trichodiene synthase; terpenoid cyclase fold, site 99.64
3acx_A293 Dehydrosqualene synthase; CRTM, carotenoid biosynt 91.9
4hd1_A294 Squalene synthase HPNC; MCSG, structural genomics, 91.74
3ipi_A295 Geranyltranstransferase; isoprene biosynthesis, he 82.01
>3g4d_A (+)-delta-cadinene synthase isozyme XC1; cyclase, lyase, magnesium, metal-binding; 2.40A {Gossypium arboreum} PDB: 3g4f_A* Back     alignment and structure
Probab=100.00  E-value=3.4e-143  Score=1156.95  Aligned_cols=466  Identities=35%  Similarity=0.598  Sum_probs=444.0

Q ss_pred             hHHHHHHHHHHHHHHHHhhccCCccchhhhHHHHHhcCCccccHHHHHHHHHhchhc------C--------------cc
Q 045043            2 KYQRRAKELEEEVKFMINNENGEMLPILELIDDVQRLGLGYRFENEIKRALHRILSW------Q--------------GY   61 (490)
Q Consensus         2 ~~~~~~~~lk~~v~~~l~~~~~d~~~~l~liD~lqrLGi~~hF~~EI~~~L~~i~~~------~--------------Gy   61 (490)
                      .+.+|+++||+|||+||.++.+|++++|++||+||||||+|||++||+++|++||+.      +              ||
T Consensus        47 ~~~~~~e~Lk~eVr~~l~~~~~~~~~~l~lID~lqrLGi~~hF~~EI~~~L~~i~~~~~~~~~dl~~~al~FRlLR~hGy  126 (554)
T 3g4d_A           47 ETEKRHQQLKEEVRKMIVAPMANSTQKLAFIDSVQRLGVSYHFTKEIEDELENIYHNNNDAENDLYTTSIRFRLLREHGY  126 (554)
T ss_dssp             HHHHHHHHHHHHHHHHHHSCCSSHHHHHHHHHHHHHTTCGGGCHHHHHHHHHHHHHSCCCTTCCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCC
Confidence            467899999999999997633499999999999999999999999999999999951      1              99


Q ss_pred             cc----------CCCccccccchhhHHHHHHHhhccCCCCCcchHHHHHHHHHHHHHHHhhccCCChhhHhhhhcccccc
Q 045043           62 DH----------PEGNFTETVHKDVKGVLSLNEASYLAFEGEDILNEALTFSRTHLNQLKTKLNPYMSELVSHSLELPRH  131 (490)
Q Consensus        62 ~v----------~~g~F~~~~~~dv~~llsLyeAs~l~~~gE~iLdeA~~fs~~~L~~~~~~~~~~l~~~V~~aL~~P~~  131 (490)
                      +|          ++|+|++++.+||+||||||||||+++|||+|||||+.||++||++.++.++++|+++|+|||++|||
T Consensus       127 ~VS~dvf~~F~~~~g~F~~~l~~d~~glL~LYeAs~l~~~gE~iLdeA~~fs~~~L~~~~~~~~~~l~~~V~~aL~~P~~  206 (554)
T 3g4d_A          127 NVSCDVFNKFKDEQGNFKSSVTSDVRGLLELYQASYLRVHGEDILDEAISFTTHHLSLAVASLDHPLSEEVSHALKQSIR  206 (554)
T ss_dssp             CCCGGGGGGGBCTTSSBCHHHHHCHHHHHHHHHHHTTCCTTCHHHHHHHHHHHHHHHHHSTTCCTTHHHHHHHHHHCCTT
T ss_pred             CCChhHHhhhcccCCCcccccccchHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHhccCchHHHHHHHHhCCCcc
Confidence            99          66899999999999999999999999999999999999999999999887888999999999999999


Q ss_pred             ccchhhHHHHHHHHhc-ccCCChHHHHHHhhhhHHHHhhhHHHHHHHHHHHhhhCccccchhhhhhHHHHHHHHhccccC
Q 045043          132 YRMRRLEVRWYTEAYR-KKDANCMLLEFAKLDFNRVQSSYQEEIKNLTRWWEDIDLAKNLKFARDRLMECFIWSVGMVPK  210 (490)
Q Consensus       132 ~~~~Rle~r~yi~~Y~-~~~~n~~lLelAKldFn~~Q~~hq~El~~lsrWw~~~~L~~~l~faRdr~~e~yfw~~a~~fe  210 (490)
                      +++||||||+||++|+ ++++|++||||||||||+||++||+||++++|||+++||.+++||||||++|||||++|++||
T Consensus       207 ~~l~rlear~yI~~Y~~~~~~n~~lLelAkldFn~~Q~~hq~El~~l~rWwk~~~l~~~L~faRdr~ve~yfw~~~~~fe  286 (554)
T 3g4d_A          207 RGLPRVEARHYLSVYQDIESHNKALLEFAKIDFNMLQFLHRKELSEICRWWKDLDFQRKLPYARDRVVEGYFWISGVYFE  286 (554)
T ss_dssp             TSCHHHHHHHHHHHHHSSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHCTTCCCCHHHHHHHHHHHCCS
T ss_pred             CCchHHHHHHHHHHhCcCccccHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCcccCCchHHHHHHHHHHHHHhhCC
Confidence            9999999999999999 889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCchHHHHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHhhhcCcccccCCChhHHHHHHHHHHHHHHHHHHHhhhcccc
Q 045043          211 PQYSNCRRALTKVAAFVTIIDYIYAVYGTLDELELFTYAVERWDINAVNDLPNYMKLSFLALYNTINEMAYDILKQHISF  290 (490)
Q Consensus       211 P~~s~~Rl~~aK~~~l~~iiDD~yD~~gt~eEl~~ft~av~rWd~~~~~~lPe~mk~~~~al~~~~~e~~~~~~~~~~~~  290 (490)
                      |+||.+|+++||+++|++++||+||+|||+|||+.||+||+|||++++++||+|||+||.+|+|+++|+           
T Consensus       287 P~~s~~R~~~aK~~~l~tviDD~yD~ygTleEl~~ft~ai~RWD~~~~~~LPeymK~~f~al~~~~~e~-----------  355 (554)
T 3g4d_A          287 PQYSLGRKMLTKVIAMASIVDDTYDSYATYEELIPYTNAIERWDIKCIDEIPEYMKPSYKALLDVYEEM-----------  355 (554)
T ss_dssp             GGGHHHHHHHHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHCCGGGGGGSCGGGHHHHHHHHHHHHHH-----------
T ss_pred             ccccHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHhcCccccccCcHHHHHHHHHHHHHHHHH-----------
Confidence            999999999999999999999999999999999999999999999999999999999999999999999           


Q ss_pred             hhhhhhhhHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHhhcccccchhHHHHHHHHhhcCCC
Q 045043          291 PALYNTVNEMAYDILKQHGEIIIPYLTKAWADLCKSFLQEAKWSYNEYTPTFEEYLENAWRSSSGELSLVHSYFLVSRSI  370 (490)
Q Consensus       291 ~~l~~~~~~~~~~~~~~~~~~~~~~lke~w~~~~~a~l~EAkW~~~g~vPs~eEYl~~~~~Ssg~~~ll~~~~~~~g~~l  370 (490)
                                ++++.++||.++++|++++|+++++||++||+|+++||+||+||||+||.+|+|+++++++++++||+.+
T Consensus       356 ----------~~~~~~~~~~~~~~ylk~~w~~l~~ayl~EAkW~~~gyvPT~EEYl~na~vSsg~~~l~~~~~~~mg~~l  425 (554)
T 3g4d_A          356 ----------VQLVAEHGRQYRVEYAKNAMIRLAQSYLVEAKWTLQNYKPSFEEFKANALPTCGYAMLAITSFVGMGDIV  425 (554)
T ss_dssp             ----------HHHHGGGTCTHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHGGGSCHHHHHHHHHHTSCTTS
T ss_pred             ----------HHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHhccceeehHHHHHHHHHHhcCCCC
Confidence                      8899888888999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cHHHHHhhhchhhhHHHHHHHHHHhhcccccc----cCCCcchhhhhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 045043          371 NKKALESLGKYHNLIRWPSTIFRLSNDLATSK----IGKTASSILCYMHETGLSEEIARQHLRNMIDSCWKKMNKEWVND  446 (490)
Q Consensus       371 ~~e~~e~~~~~p~ii~~s~~i~RL~NDI~S~k----rG~~~n~V~cyMke~gvS~EeA~~~i~~~i~~~wk~ln~e~l~~  446 (490)
                      |+++++|+.++|+++++++.|+||+|||+|++    +|+++|+|+|||+|||+|+|+|++++++||+++||+||++|+++
T Consensus       426 t~e~~e~~~~~p~i~~~~~~I~RL~NDI~S~k~E~~rG~van~V~cYMke~GvSeEeA~~~i~~~Ie~~wK~lN~e~l~~  505 (554)
T 3g4d_A          426 TPETFKWAASDPKIIQASTIICRFMDDVAEHKFKHRREDDCSAIECYMEEYGVTAQEAYDVFNKHVESAWKDLNQEFLKP  505 (554)
T ss_dssp             CHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHCC------CCCHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHSSS
T ss_pred             CHHHHHhccccHHHHHHHHHHHHHhcccchhhhhhccCCccHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            99999999999999999999999999999999    99999999999999999999999999999999999999999998


Q ss_pred             CCCCcHHHHHHHHHHhhhhchhcccCCCCCCCChhHHHHhhhc
Q 045043          447 QHPFVEPFVETAFNLARIAQCTYQYGDEHGAPDGRAKKRVVIS  489 (490)
Q Consensus       447 ~~~~p~~~~~~~~n~aR~~~~~Y~~~D~~t~~~~~~k~~i~~~  489 (490)
                      + ++|+||+++++|+||+++++|+++||||.|+..+|++|+++
T Consensus       506 ~-~~p~~~~~~~~NlaR~~~~~Y~~~Dg~t~~~~~~k~~i~~l  547 (554)
T 3g4d_A          506 T-EMPTEVLNRSLNLARVMDVLYREGDGYTYVGKAAKGGITSL  547 (554)
T ss_dssp             C-SSCHHHHHHHHHHHHHHHHHSCC-----CCCHHHHHHHHHH
T ss_pred             C-CCCHHHHHHHHHHHHHHHHHhcCCCCCCCccHHHHHHHHHH
Confidence            7 89999999999999999999999999999988899999986
>3n0f_A Isoprene synthase; terpene cyclase fold, hemiterpene synthase, DDXXD motif, NSE motif, lyase; 2.70A {Populus tremula x populus alba} PDB: 3n0g_A* Back     alignment and structure
>3m00_A Aristolochene synthase; plant terpenoid cyclase, lyase binding domain, (2-CIS, 6-trans)-2-fluorofarnesyl diphospha magnesium, metal-binding; HET: 2CF; 2.10A {Nicotiana tabacum} PDB: 3lz9_A* 3m02_A* 3m01_A* 5eau_A* 1hxa_A* 1hx9_A* 1hxc_A* 5eas_A 1hxg_A 4di5_A* 5eat_A* Back     alignment and structure
>2ong_A 4S-limonene synthase; monoterpene synthase, monoterpene cyclase, geranyl diphosphate, 2 fluorogeranyl diphosphate linalyl diphosphate; HET: FPG BTB; 2.70A {Mentha spicata} PDB: 2onh_A* Back     alignment and structure
>1n1b_A (+)-bornyl diphosphate synthase; terpene synthase fold, isomerase; 2.00A {Salvia officinalis} SCOP: a.102.4.1 a.128.1.3 PDB: 1n1z_A* 1n20_A* 1n21_A* 1n22_A* 1n23_A* 1n24_A* Back     alignment and structure
>2j5c_A 1,8-cineole synthase; terpene synthases, 1, monoterpene, lyase; 1.95A {Salvia fruticosa} Back     alignment and structure
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A* Back     alignment and structure
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis} Back     alignment and structure
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A* Back     alignment and structure
>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A* Back     alignment and structure
>1ps1_A Pentalenene synthase; antibiotic biosynthesis, sesquiterpene cyclase, lyase; 2.60A {Streptomyces SP} SCOP: a.128.1.4 PDB: 1hm7_A 1hm4_A Back     alignment and structure
>1di1_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid biosynthesis, lyase; 2.50A {Penicillium roqueforti} SCOP: a.128.1.4 PDB: 1dgp_A Back     alignment and structure
>3bny_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid, farnesyl diphosphate, magnesium, cyclization, lyase; HET: FPF; 1.89A {Aspergillus terreus} PDB: 2e4o_A 2oa6_A* 3bnx_A* 3cke_A* Back     alignment and structure
>3kb9_A EPI-isozizaene synthase; terpenoid cyclase, alpha-helical fold, farnesyl diphosphate, metal-binding, lyase, magnesium; HET: BTM; 1.60A {Streptomyces coelicolor} PDB: 3kbk_A 3lgk_A 3lg5_A* Back     alignment and structure
>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Back     alignment and structure
>1yyq_A Trichodiene synthase; terpenoid cyclase fold, site-directed mutant, pyrophosphate, lyase; 2.10A {Fusarium sporotrichioides} PDB: 1yj4_A 1yyr_A* 1yys_A* 1jfa_A 1jfg_A 2q9y_A* 2q9z_A 2ael_A* 2aek_A* 2aet_A 2ps7_A 2ps8_A 1kiy_A 1kiz_A 1yyt_A* 1yyu_A* 2ps5_A 2ps4_A 2ps6_A Back     alignment and structure
>3acx_A Dehydrosqualene synthase; CRTM, carotenoid biosynthesis, staphyloxanthin biosynthesis, transferase, head-TO-head condensation, inhibitor; HET: 673; 1.31A {Staphylococcus aureus} PDB: 2zcp_A* 2zcq_A* 2zcr_A* 2zcs_A* 2zy1_A* 3acw_A* 2zco_A* 3acy_A* 3npr_A* 3nri_A* 3tfn_A* 3tfp_A* 3tfv_A* 3adz_A* 3lgz_B* 3vjd_A* 3vje_A* 3ae0_A* 4ea2_A* 4e9u_A* ... Back     alignment and structure
>4hd1_A Squalene synthase HPNC; MCSG, structural genomics, PSI-biology, midwest center for S genomics, transferase; 2.40A {Alicyclobacillus acidocaldarius subsp} Back     alignment and structure
>3ipi_A Geranyltranstransferase; isoprene biosynthesis, helical bundle, protein structure initiative II (PSI II), structural genomics, nysgxrc; 1.90A {Methanosarcina mazei} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 490
d1n1ba2328 a.128.1.3 (A:271-598) (+)-bornyl diphosphate synth 1e-117
d5easa2328 a.128.1.3 (A:221-548) 5-Epi-aristolochene synthase 1e-115
d5easa1197 a.102.4.1 (A:24-220) 5-Epi-aristolochene synthase 1e-40
d1n1ba1207 a.102.4.1 (A:64-270) (+)-bornyl diphosphate syntha 7e-38
d1ps1a_311 a.128.1.4 (A:) Pentalenene synthase {Streptomyces 1e-35
d1di1a_300 a.128.1.4 (A:) Aristolochene synthase {Fungus (Pen 3e-24
>d1n1ba2 a.128.1.3 (A:271-598) (+)-bornyl diphosphate synthase {Garden sage (Salvia officinalis) [TaxId: 38868]} Length = 328 Back     information, alignment and structure

class: All alpha proteins
fold: Terpenoid synthases
superfamily: Terpenoid synthases
family: Terpenoid cyclase C-terminal domain
domain: (+)-bornyl diphosphate synthase
species: Garden sage (Salvia officinalis) [TaxId: 38868]

 Score =  345 bits (887), Expect = e-117
 Identities = 124/340 (36%), Positives = 188/340 (55%), Gaps = 27/340 (7%)

Query: 152 NCMLLEFAKLDFNRVQSSYQEEIKNLTRWWEDIDLAKNLKFARDRLMECFIWSVGMVPKP 211
           N ++ E AKL+FN +Q+++Q+E+K+L+RWW  +   + L F RDRL+E F W+VGM    
Sbjct: 2   NPLIFELAKLNFNIIQATHQQELKDLSRWWSRLCFPEKLPFVRDRLVESFFWAVGMFEPH 61

Query: 212 QYSNCRRALTKVAAFVTIIDYIYAVYGTLDELELFTYAVERWDINAVNDLPNYMKLSFLA 271
           Q+   R+    +    T+ID IY VYGTLDELELFT   +RWD  ++  LP YM+L +  
Sbjct: 62  QHGYQRKMAATIIVLATVIDDIYDVYGTLDELELFTDTFKRWDTESITRLPYYMQLCYWG 121

Query: 272 LYNTINEMAYDILKQHISFPALYNTVNEMAYDILKQHGEIIIPYLTKAWADLCKSFLQEA 331
           ++N I                     ++ AYDILK+HG   + YL K+  DL +++  EA
Sbjct: 122 VHNYI---------------------SDAAYDILKEHGFFCLQYLRKSVVDLVEAYFHEA 160

Query: 332 KWSYNEYTPTFEEYLENAWRSSSGELSLVHSYFLVSRSINKKA-LESLGKYHNLIRWPST 390
           KW ++ YTP+ +EYL  A  S +    +  +YF  + + +  A ++SL +YH+++     
Sbjct: 161 KWYHSGYTPSLDEYLNIAKISVASPAIISPTYFTFANASHDTAVIDSLYQYHDILCLAGI 220

Query: 391 IFRLSNDLATSKI----GKTASSILCYMHETGLSEEIARQHLRNMIDSCWKKMNKEWVND 446
           I RL +DL TS      G    +I CYM ET  SEE A +H++ +I   WK MN      
Sbjct: 221 ILRLPDDLGTSYFELARGDVPKTIQCYMKETNASEEEAVEHVKFLIREAWKDMNTAIAAG 280

Query: 447 QHPFVEPFVETAFNLARIAQCTYQYGDEHGAPDGRAKKRV 486
            +PF +  V  A N+ R+AQ  Y +GD  G    +  + +
Sbjct: 281 -YPFPDGMVAGAANIGRVAQFIYLHGDGFGVQHSKTYEHI 319
>d5easa2 a.128.1.3 (A:221-548) 5-Epi-aristolochene synthase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 328 Back     information, alignment and structure
>d5easa1 a.102.4.1 (A:24-220) 5-Epi-aristolochene synthase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 197 Back     information, alignment and structure
>d1n1ba1 a.102.4.1 (A:64-270) (+)-bornyl diphosphate synthase {Garden sage (Salvia officinalis) [TaxId: 38868]} Length = 207 Back     information, alignment and structure
>d1ps1a_ a.128.1.4 (A:) Pentalenene synthase {Streptomyces sp., UC5319 [TaxId: 1931]} Length = 311 Back     information, alignment and structure
>d1di1a_ a.128.1.4 (A:) Aristolochene synthase {Fungus (Penicillium roqueforti) [TaxId: 5082]} Length = 300 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query490
d1n1ba2328 (+)-bornyl diphosphate synthase {Garden sage (Salv 100.0
d5easa2328 5-Epi-aristolochene synthase {Tobacco (Nicotiana t 100.0
d5easa1197 5-Epi-aristolochene synthase {Tobacco (Nicotiana t 100.0
d1n1ba1207 (+)-bornyl diphosphate synthase {Garden sage (Salv 100.0
d1ps1a_311 Pentalenene synthase {Streptomyces sp., UC5319 [Ta 100.0
d1di1a_300 Aristolochene synthase {Fungus (Penicillium roquef 99.95
d1kiya_354 Trichodiene synthase {Fusarium sporotrichioides [T 99.13
d1ezfa_333 Squalene synthase {Human (Homo sapiens) [TaxId: 96 87.79
>d1n1ba2 a.128.1.3 (A:271-598) (+)-bornyl diphosphate synthase {Garden sage (Salvia officinalis) [TaxId: 38868]} Back     information, alignment and structure
class: All alpha proteins
fold: Terpenoid synthases
superfamily: Terpenoid synthases
family: Terpenoid cyclase C-terminal domain
domain: (+)-bornyl diphosphate synthase
species: Garden sage (Salvia officinalis) [TaxId: 38868]

Probab=100.00  E-value=6.4e-97  Score=752.71  Aligned_cols=317  Identities=39%  Similarity=0.696  Sum_probs=301.2

Q ss_pred             CChHHHHHHhhhhHHHHhhhHHHHHHHHHHHhhhCccccchhhhhhHHHHHHHHhccccCCCCchHHHHHHHHHHHHHHH
Q 045043          151 ANCMLLEFAKLDFNRVQSSYQEEIKNLTRWWEDIDLAKNLKFARDRLMECFIWSVGMVPKPQYSNCRRALTKVAAFVTII  230 (490)
Q Consensus       151 ~n~~lLelAKldFn~~Q~~hq~El~~lsrWw~~~~L~~~l~faRdr~~e~yfw~~a~~feP~~s~~Rl~~aK~~~l~~ii  230 (490)
                      +|++||||||||||+||++||+||++++|||+++||.+++||+|||++|||||++|++|||+||.+|++|||++++++++
T Consensus         1 ~N~~lLelAKlDFn~~Q~~hq~El~~l~rWwk~~~l~~~l~faRdr~ve~Yfwa~~~~feP~~s~~Ri~~aK~~~l~~ii   80 (328)
T d1n1ba2           1 MNPLIFELAKLNFNIIQATHQQELKDLSRWWSRLCFPEKLPFVRDRLVESFFWAVGMFEPHQHGYQRKMAATIIVLATVI   80 (328)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHCTTSCCCHHHHHHHHHHHCCSTTCHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHhCCcccCCchHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHhh
Confidence            59999999999999999999999999999999999988999999999999999999999999999999999999999999


Q ss_pred             HHhhcccCCHHHHHHHHHHhhhcCcccccCCChhHHHHHHHHHHHHHHHHHHHhhhcccchhhhhhhhHHHHHHHHhcCc
Q 045043          231 DYIYAVYGTLDELELFTYAVERWDINAVNDLPNYMKLSFLALYNTINEMAYDILKQHISFPALYNTVNEMAYDILKQHGE  310 (490)
Q Consensus       231 DD~yD~~gt~eEl~~ft~av~rWd~~~~~~lPe~mk~~~~al~~~~~e~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  310 (490)
                      ||+||+|||+||++.||+||+|||.+++++||+|||+||.+++++++++                     +.++.+.||+
T Consensus        81 DD~yD~ygt~eEl~~ft~ai~rWd~~~~~~lp~ymk~~~~~l~~~~~e~---------------------~~~~~~~~g~  139 (328)
T d1n1ba2          81 DDIYDVYGTLDELELFTDTFKRWDTESITRLPYYMQLCYWGVHNYISDA---------------------AYDILKEHGF  139 (328)
T ss_dssp             HHHHHTTSCHHHHHHHHHHHHHTCSSGGGGSCHHHHHHHHHHHHHHHHH---------------------HHHHHHHHSC
T ss_pred             hHHhcccCCHHHHHHHHHHHHhcCCcccccCcchHHHHHHHHHHHHHHH---------------------HHHHHHhcCc
Confidence            9999999999999999999999999999999999999999999999999                     9999999999


Q ss_pred             ccHHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHhhcccccchhHHHHHHHHhhcCCCc-HHHHHhhhchhhhHHHHH
Q 045043          311 IIIPYLTKAWADLCKSFLQEAKWSYNEYTPTFEEYLENAWRSSSGELSLVHSYFLVSRSIN-KKALESLGKYHNLIRWPS  389 (490)
Q Consensus       311 ~~~~~lke~w~~~~~a~l~EAkW~~~g~vPs~eEYl~~~~~Ssg~~~ll~~~~~~~g~~l~-~e~~e~~~~~p~ii~~s~  389 (490)
                      ++.+|++++|++++++|++||+|+++||+||+||||+||.+|+|+++++++++++||+.++ +++++|+.++|+++++++
T Consensus       140 ~~~~~lk~~w~~l~~ayl~EakW~~~g~vPt~eEYl~~~~vS~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~  219 (328)
T d1n1ba2         140 FCLQYLRKSVVDLVEAYFHEAKWYHSGYTPSLDEYLNIAKISVASPAIISPTYFTFANASHDTAVIDSLYQYHDILCLAG  219 (328)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTCHHHHHHHHHTTSTTCCCCHHHHHHHHTTCHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHhhceehhhHHHHHHHHHHhCCCccchHHHHHHHhccHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999998755 557999999999999999


Q ss_pred             HHHHHhhcccccc----cCCCcchhhhhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHhhhh
Q 045043          390 TIFRLSNDLATSK----IGKTASSILCYMHETGLSEEIARQHLRNMIDSCWKKMNKEWVNDQHPFVEPFVETAFNLARIA  465 (490)
Q Consensus       390 ~i~RL~NDI~S~k----rG~~~n~V~cyMke~gvS~EeA~~~i~~~i~~~wk~ln~e~l~~~~~~p~~~~~~~~n~aR~~  465 (490)
                      .|+||+|||+|++    ||+++|+|+|||+|||+|+|||+++++++|+++||+||+++++++ ++|++|+++++|+||++
T Consensus       220 ~i~RL~nDi~~~~~E~~rg~~~s~v~cymke~~~s~eeA~~~i~~~ie~~wk~ln~e~l~~~-~vp~~~~~~~ln~aR~~  298 (328)
T d1n1ba2         220 IILRLPDDLGTSYFELARGDVPKTIQCYMKETNASEEEAVEHVKFLIREAWKDMNTAIAAGY-PFPDGMVAGAANIGRVA  298 (328)
T ss_dssp             HHHHHHHHHC---------CCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHTCC-SSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhhhhHHHHHhcCCcchHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHcCCC-CCCHHHHHHHHHHHHHH
Confidence            9999999999999    999999999999999999999999999999999999999999988 89999999999999999


Q ss_pred             chhcccCCCCCCCChhHHHHhhhc
Q 045043          466 QCTYQYGDEHGAPDGRAKKRVVIS  489 (490)
Q Consensus       466 ~~~Y~~~D~~t~~~~~~k~~i~~~  489 (490)
                      +++|+++||||.|++.+|++|+++
T Consensus       299 ~~~Y~~~Dgyt~~~~~~k~~I~~l  322 (328)
T d1n1ba2         299 QFIYLHGDGFGVQHSKTYEHIAGL  322 (328)
T ss_dssp             HHHTTTSCCC----CHHHHHHHHH
T ss_pred             HHHhcCCCCCCCCcHHHHHHHHHH
Confidence            999999999999988899999886
>d5easa2 a.128.1.3 (A:221-548) 5-Epi-aristolochene synthase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Back     information, alignment and structure
>d5easa1 a.102.4.1 (A:24-220) 5-Epi-aristolochene synthase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Back     information, alignment and structure
>d1n1ba1 a.102.4.1 (A:64-270) (+)-bornyl diphosphate synthase {Garden sage (Salvia officinalis) [TaxId: 38868]} Back     information, alignment and structure
>d1ps1a_ a.128.1.4 (A:) Pentalenene synthase {Streptomyces sp., UC5319 [TaxId: 1931]} Back     information, alignment and structure
>d1di1a_ a.128.1.4 (A:) Aristolochene synthase {Fungus (Penicillium roqueforti) [TaxId: 5082]} Back     information, alignment and structure
>d1kiya_ a.128.1.5 (A:) Trichodiene synthase {Fusarium sporotrichioides [TaxId: 5514]} Back     information, alignment and structure
>d1ezfa_ a.128.1.2 (A:) Squalene synthase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure