Citrus Sinensis ID: 045051

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700
MKTLVEEFSGSMKNPLQFDRGSVSTYSNRNHVDKFKLKQSREPIDPPLPPSASLQNNQNPPSDSDSSSTMSSYGDPADICELSNTTLKFISEILMEEDLEGKTCMLQDCLALQAAEKSFYDVLGQKYPPSPNQISPCSSRNSETLNDYCTSGSTSVNNLFEPNWMSNQGDSSSSITQTNLFNSPESVLVPNLFSTGSSFLLNDNTAIINSTSDSAKSPEGEDRTYSSPYGSRGRKYDELEDSDYLEEGRSNKQSALSPPENEPLEMYDEVVLCKCENNKSTVCLIHGYVQNGSSGKLQQNGQPKGSSSATTRSRRKGKKSEVVDLWTLLTLCAQAVANYDQRTANDFLKQIRQHSSPFGDGIQRLAHYFANGLEVRLAGTRTPVQTHLASSRASAAEVLQAYKVYVSSCPFNRMTFFMANRMILKLAEKATRLHIVDFGIGYGFQWPCLIQRISKRPGGPPKIRMTAIEFPQPGFKPAERVEETGHRLKCYSQRFGVPFEYNTIAQKWQNIQLEDLKIDREEMTVVNCLYRMRNLPDDTVVINSPRDAVLELIKKINPDIFIHGVVNGTYNAPFFLPRFREALFHFSTFFDMFESTVPREDQGRMIFEREIYGKDAMNVIACEGIERVERPETYKQWQARNLRAGFKQLELDKDILKTIRTLVKSNFHPDFVIDEAGEWMLQGWKGRLAYALSFWKPVQD
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHccccccccccccccccccHHHHHHcccccccccHHHHccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHcccEEEEEccccccccccHHHHHHHccccccccEEEEEEcccccccccHHHHHHHHHHHHHHHHHcccccEEEEEccccccccccccccccccEEEEEEcccccccccccccccccHHHHHHHHHHHcccEEEEccccccccccccHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHcccccccccHHHHHHHHHHHHHccccccEEEEcccEEEEEEcccEEEEEEEEEEccc
cccHHHHccccccccEEEccccEEEccccccccccEcccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHcHHcccccccccHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHccHHHHHccccccccEEEEccccccccccccccccccccccccccccccccHHHHHHcccccccEEEcccccHHHHHHHEEEcccccccccHHHHHHHHccHHHcccccccccccccccccccEEEccccccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHccccHHHHHHccccccHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHccccEEEEEEcccccccHHHHHHHHHHcccccccEEEEEcccccccccccHHHHHHHHHHHHHHHHHccccEEEHHHHccHccccHHHcccccccEEEEEHHHHHccccccccccccHHHHHHHHHHHccccEEEEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHEccccHHcccHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHccccEEEEccccEEEEcccccEEEEEEccccccc
MKTLVEEfsgsmknplqfdrgsvstysnrnhvdkfklkqsrepidpplppsaslqnnqnppsdsdssstmssygdpadicelSNTTLKFISEILMEEDLEGKTCMLQDCLALQAAEKSFYDVlgqkyppspnqispcssrnsetlndyctsgstsvnnlfepnwmsnqgdssssitqtnlfnspesvlvpnlfstgssfllndntaiinstsdsakspegedrtysspygsrgrkydeledsdyleegrsnkqsalsppeneplemydEVVLCKCENNKSTVCLIHGyvqngssgklqqngqpkgsssattrsrrkgkksevVDLWTLLTLCAQAVANYDQRTANDFLKQIRqhsspfgdGIQRLAHYFANGLEvrlagtrtpvqthLASSRASAAEVLQAYKVYVsscpfnrmTFFMANRMILKLAEKATRLHIVDfgigygfqwpcliqriskrpggppkirmtaiefpqpgfkpaerveetghrlkcysqrfgvpfeyNTIAQKWQNIQLEDLKIDREEMTVVNCLYRmrnlpddtvvinsPRDAVLELIKKinpdifihgvvngtynapfflPRFREALFHfstffdmfestvpredqgrmIFEREIYGKDAMNVIACEgierverpetyKQWQARNLRAGFKQLELDKDILKTIRTLVksnfhpdfvidEAGEWMLQGWKGRLAYALSFWKPVQD
MKTLVEEfsgsmknplqfdrgsvstysnrnHVDKFKLKQSREPIDPPLPPSASLQNNQNPPSDSDSSSTMSSYGDPADICELSNTTLKFISEILMEEDLEGKTCMLQDCLALQAAEKSFYDVLGQKYPPspnqispcssrnSETLNDYCTSGSTSVNNLFEPNWMSNQGDSSSSITQTNLFNSPESVLVPNLFSTGSSFLLNDNTAIINstsdsakspegedrtysspygsrgrkydELEDSDYLEegrsnkqsalsppenepLEMYDEVVLCKCENNKSTVCLIHGYVQNgssgklqqngqpkgsssattrsrrkgkksevvDLWTLLTLCAQAVANYDQRTANDFLKQIRQHSSPFGDGIQRLAHYFANGLEVRLAGTRTPVQTHLASSRASAAEVLQAYKVYVSSCPFNRMTFFMANRMILKLAEKATRLHIVDFGIGYGFQWPCLIQRISKRPGGPPKIRMtaiefpqpgfkPAERVEETGHRLKCYSQRFGVPFEYNTIAQKWQNIQLEDLKIDREEMTVVNCLYrmrnlpddtvviNSPRDAVLELIKKINPDIFIHGVVNGTYNAPFFLPRFREALFHFSTFFDMFestvpredqGRMIFEreiygkdamNVIACEGIERVERPETYKQWQARNLRAGFKQLELDKDILKTIRTLVKSNFHPDFVIDEAGEWMLQGWKGRLAYALSFWKPVQD
MKTLVEEFSGSMKNPLQFDRGSVSTYSNRNHVDKFKLKQSREPIDPPLPPSASLQNNQNPPsdsdssstmssYGDPADICELSNTTLKFISEILMEEDLEGKTCMLQDCLALQAAEKSFYDVLGQKYPPSPNQISPCSSRNSETLNDYCTSGSTSVNNLFEPNWMSNQGDSSSSITQTNLFNSPESVLVPNLFSTGSSFLLNDNTAIINSTSDSAKSPEGEDRTYSSPYGSRGRKydeledsdyleeGRSNKQSALSPPENEPLEMYDEVVLCKCENNKSTVCLIHGYVQNGSSGKLQQNGQPKGSSSATTRSRRKGKKSEVVDLWTLLTLCAQAVANYDQRTANDFLKQIRQHSSPFGDGIQRLAHYFANGLEVRLAGTRTPVQTHLASSRASAAEVLQAYKVYVSSCPFNRMTFFMANRMILKLAEKATRLHIVDFGIGYGFQWPCLIQRISKRPGGPPKIRMTAIEFPQPGFKPAERVEETGHRLKCYSQRFGVPFEYNTIAQKWQNIQLEDLKIDREEMTVVNCLYRMRNLPDDTVVINSPRDAVLELIKKINPDIFIHGVVNGTYNAPFFLPRFREALFHFSTFFDMFESTVPREDQGRMIFEREIYGKDAMNVIACEGIERVERPETYKQWQARNLRAGFKQLELDKDILKTIRTLVKSNFHPDFVIDEAGEWMLQGWKGRLAYALSFWKPVQD
*****************************************************************************DICELSNTTLKFISEILMEEDLEGKTCMLQDCLALQAAEKSFYDVLG***************************************************************LVPNLFSTGSSFLLNDNTAI**********************************************************MYDEVVLCKCENNKSTVCLIHGYVQ*******************************VVDLWTLLTLCAQAVANYDQRTANDFLKQIRQHSSPFGDGIQRLAHYFANGLEVRLAGTRTPVQTHLASSRASAAEVLQAYKVYVSSCPFNRMTFFMANRMILKLAEKATRLHIVDFGIGYGFQWPCLIQRIS*****************************TGHRLKCYSQRFGVPFEYNTIAQKWQNIQLEDLKIDREEMTVVNCLYRMRNLPDDTVVINSPRDAVLELIKKINPDIFIHGVVNGTYNAPFFLPRFREALFHFSTFFDMFESTVPREDQGRMIFEREIYGKDAMNVIACEGIERVERPETYKQWQARNLRAGFKQLELDKDILKTIRTLVKSNFHPDFVIDEAGEWMLQGWKGRLAYALSFWK****
******E*SGSMKN***************N*****KL**********************************************NTTLKFISEILMEEDLEGKTCMLQDCLALQAAE******************************************************************************************************************************************************YDEVVLCKC*************************************************LWTLLTLCAQAVANYDQRTANDFLKQIRQHSSP**DGIQRLAHYFANGLEVRLAGTRTPVQ*******ASAAEVLQAYKVYVSSCPFNRMTFFMANRMILKLAEKATRLHIVDFGIGYGFQWPCLIQRI******PPKIRMTAIEFPQPGFKPAERVEETGHRLKCYSQRFGVPFEYNTIAQKWQNIQLEDLKIDREEMTVVNCLYRMRNLPDDTVVINSPRDAVLELIKKINPDIFIHGVVNGTYNAPFFLPRFREALFHFSTFFDMFESTVPREDQGRMIFEREIYGKDAMNVIACEGIERVERPETYKQWQARNLRAGFKQLELDKDILKTIRTLVKSNFHPDFVIDEAGEWMLQGWKGRLAYALSFWKPVQ*
***********MKNPLQFDRGSVSTYSNRNHVDKFKLKQSREPIDPPLPPS**********************GDPADICELSNTTLKFISEILMEEDLEGKTCMLQDCLALQAAEKSFYDVLGQKYPPSPNQISPCSSRNSETLNDYCTSGSTSVNNLFEPNWMS*********TQTNLFNSPESVLVPNLFSTGSSFLLNDNTAIINST*********************GRKYDELEDSDYLE***************EPLEMYDEVVLCKCENNKSTVCLIHGYVQNGSS**************************EVVDLWTLLTLCAQAVANYDQRTANDFLKQIRQHSSPFGDGIQRLAHYFANGLEVRLAGTRT************AAEVLQAYKVYVSSCPFNRMTFFMANRMILKLAEKATRLHIVDFGIGYGFQWPCLIQRISKRPGGPPKIRMTAIEFPQPGFKPAERVEETGHRLKCYSQRFGVPFEYNTIAQKWQNIQLEDLKIDREEMTVVNCLYRMRNLPDDTVVINSPRDAVLELIKKINPDIFIHGVVNGTYNAPFFLPRFREALFHFSTFFDMFESTVPREDQGRMIFEREIYGKDAMNVIACEGIERVERPETYKQWQARNLRAGFKQLELDKDILKTIRTLVKSNFHPDFVIDEAGEWMLQGWKGRLAYALSFWKPVQD
*KTLVEEFSGSMKNPLQFDRGSVSTYSNRNHVDKFKLKQSREPIDPPLPPS***************************ICELSNTTLKFISEILMEEDLEGKTCMLQDCLALQAAEKSFYDVLGQKYPP******************************FEPNWM****DSSSSITQTNLFNSPESVLVPNLFSTGSSFLLNDNTAIINSTS****************************DSDYLEEGRSNKQSALSPPENEPLEMYDEVVLCKCENNKSTVCLIHGYVQ**********************SRRKGKKSEVVDLWTLLTLCAQAVANYDQRTANDFLKQIRQHSSPFGDGIQRLAHYFANGLEVRLAGTRTPVQTHLASSRASAAEVLQAYKVYVSSCPFNRMTFFMANRMILKLAEKATRLHIVDFGIGYGFQWPCLIQRISKRPGGPPKIRMTAIEFPQPGFKPAERVEETGHRLKCYSQRFGVPFEYNTIAQKWQNIQLEDLKIDREEMTVVNCLYRMRNLPDDTVVINSPRDAVLELIKKINPDIFIHGVVNGTYNAPFFLPRFREALFHFSTFFDMFESTVPREDQGRMIFEREIYGKDAMNVIACEGIERVERPETYKQWQARNLRAGFKQLELDKDILKTIRTLVKSNFHPDFVIDEAGEWMLQGWKGRLAYALSFWKP***
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MKTLVEEFSGSMKNPLQFDRGSVSTYSNRNHVDKFKLKQSREPIDPPLPPSASLQNNQNPPSDSDSSSTMSSYGDPADICELSNTTLKFISEILMEEDLEGKTCMLQDCLALQAAEKSFYDVLGQKYPPSPNQISPCSSRNSETLNDYCTSGSTSVNNLFEPNWMSNQGDSSSSITQTNLFNSPESVLVPNLFSTGSSFLLNDNTAIINSTSDSAKSPEGEDRTYSSPYGSRGRKYDELEDSDYLEEGRSNKQSALSPPENEPLEMYDEVVLCKCENNKSTVCLIHGYVQNGSSGKLQQNGQPKGSSSATTRSRRKGKKSEVVDLWTLLTLCAQAVANYDQRTANDFLKQIRQHSSPFGDGIQRLAHYFANGLEVRLAGTRTPVQTHLASSRASAAEVLQAYKVYVSSCPFNRMTFFMANRMILKLAEKATRLHIVDFGIGYGFQWPCLIQRISKRPGGPPKIRMTAIEFPQPGFKPAERVEETGHRLKCYSQRFGVPFEYNTIAQKWQNIQLEDLKIDREEMTVVNCLYRMRNLPDDTVVINSPRDAVLELIKKINPDIFIHGVVNGTYNAPFFLPRFREALFHFSTFFDMFESTVPREDQGRMIFEREIYGKDAMNVIACEGIERVERPETYKQWQARNLRAGFKQLELDKDILKTIRTLVKSNFHPDFVIDEAGEWMLQGWKGRLAYALSFWKPVQD
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query700 2.2.26 [Sep-21-2011]
Q9XE58769 Scarecrow-like protein 14 yes no 0.868 0.790 0.449 1e-160
P0C883694 Scarecrow-like protein 33 no no 0.874 0.881 0.432 1e-146
Q9LTI5610 Scarecrow-like protein 11 no no 0.817 0.937 0.435 1e-144
O80933718 Scarecrow-like protein 9 no no 0.538 0.525 0.601 1e-139
P0C884630 Scarecrow-like protein 34 no no 0.828 0.920 0.450 1e-133
Q9SNB8583 Scarecrow-like protein 30 no no 0.62 0.744 0.522 1e-132
Q3EDH0695 Scarecrow-like protein 31 no no 0.864 0.870 0.406 1e-127
Q8H125597 Scarecrow-like protein 5 no no 0.57 0.668 0.307 4e-56
Q69VG1571 Chitin-inducible gibberel no no 0.547 0.670 0.299 2e-54
Q9M0M5529 Scarecrow-like protein 13 no no 0.534 0.706 0.322 1e-53
>sp|Q9XE58|SCL14_ARATH Scarecrow-like protein 14 OS=Arabidopsis thaliana GN=SCL14 PE=2 SV=2 Back     alignment and function desciption
 Score =  566 bits (1459), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 308/685 (44%), Positives = 419/685 (61%), Gaps = 77/685 (11%)

Query: 86  TLKFISEILMEEDLEGKTCMLQDCLALQAAEKSFYDVLGQKYPPS--------PNQI--- 134
            LK+IS++LMEED+E K CM  D LALQAAEKS Y+ LG+KYP S        P ++   
Sbjct: 86  VLKYISQVLMEEDMEEKPCMFHDALALQAAEKSLYEALGEKYPSSSSASSVDHPERLASD 145

Query: 135 SPCSSRNSETLNDYC-------TSGSTSVNNL-FEPNWMSNQGDSSSSITQTNLFNSPES 186
           SP  S +    +DY        +    SV+ L   P+W+     S+     T+  NS   
Sbjct: 146 SPDGSCSGGAFSDYASTTTTTSSDSHWSVDGLENRPSWLHTPMPSNFVFQSTSRSNSVTG 205

Query: 187 V----------------LVPNLF---------------------STGSSFLLNDNTAIIN 209
                            LV N+F                      +   F+  D+   +N
Sbjct: 206 GGGGGNSAVYGSGFGDDLVSNMFKDDELAMQFKKGVEEASKFLPKSSQLFIDVDSYIPMN 265

Query: 210 STSDSAKS-----PEGEDRT-------YSSPYGSRGRKYDELEDSD--YLEEGRSNKQSA 255
           S S    S      E +D T       Y+ P      K     D D  ++EE RSNKQSA
Sbjct: 266 SGSKENGSEVFVKTEKKDETEHHHHHSYAPPPNRLTGKKSHWRDEDEDFVEE-RSNKQSA 324

Query: 256 LSPPENEPLEMYDEVVLCKCENNKSTVCLIHGYVQNGSSGKL--QQNGQPKGSSSATTRS 313
           +   E+E  EM+D++++C        VC+++      S+  +  Q NG       +T+ S
Sbjct: 325 VYVEESELSEMFDKILVC---GPGKPVCILNQNFPTESAKVVTAQSNGAKIRGKKSTSTS 381

Query: 314 RRKGKKSEVVDLWTLLTLCAQAVANYDQRTANDFLKQIRQHSSPFGDGIQRLAHYFANGL 373
                K E  DL TLL LCAQAV+  D+RTAN+ L+QIR+HSSP G+G +RLAHYFAN L
Sbjct: 382 HSNDSKKETADLRTLLVLCAQAVSVDDRRTANEMLRQIREHSSPLGNGSERLAHYFANSL 441

Query: 374 EVRLAGTRTPVQTHLASSRASAAEVLQAYKVYVSSCPFNRMTFFMANRMILKLAEKATRL 433
           E RLAGT T + T L+S + SAA++L+AY+ Y+S CPF +     AN  +++    A  +
Sbjct: 442 EARLAGTGTQIYTALSSKKTSAADMLKAYQTYMSVCPFKKAAIIFANHSMMRFTANANTI 501

Query: 434 HIVDFGIGYGFQWPCLIQRIS-KRPGGPPKIRMTAIEFPQPGFKPAERVEETGHRLKCYS 492
           HI+DFGI YGFQWP LI R+S  RPGG PK+R+T IE PQ GF+PAE V+ETGHRL  Y 
Sbjct: 502 HIIDFGISYGFQWPALIHRLSLSRPGGSPKLRITGIELPQRGFRPAEGVQETGHRLARYC 561

Query: 493 QRFGVPFEYNTIAQKWQNIQLEDLKIDREEMTVVNCLYRMRNLPDDTVVINSPRDAVLEL 552
           QR  VPFEYN IAQKW+ IQ+EDLK+ + E  VVN L+R RNL D+TV++NSPRDAVL+L
Sbjct: 562 QRHNVPFEYNAIAQKWETIQVEDLKLRQGEYVVVNSLFRFRNLLDETVLVNSPRDAVLKL 621

Query: 553 IKKINPDIFIHGVVNGTYNAPFFLPRFREALFHFSTFFDMFESTVPREDQGRMIFEREIY 612
           I+KINP++FI  +++G YNAPFF+ RFREALFH+S  FDM +S + RED+ R+++E+E Y
Sbjct: 622 IRKINPNVFIPAILSGNYNAPFFVTRFREALFHYSAVFDMCDSKLAREDEMRLMYEKEFY 681

Query: 613 GKDAMNVIACEGIERVERPETYKQWQARNLRAGFKQLELDKDILKTIRTLVKSNFHPDFV 672
           G++ +NV+ACEG ERVERPETYKQWQAR +RAGF+QL L+K++++ ++  +++ +  +F 
Sbjct: 682 GREIVNVVACEGTERVERPETYKQWQARLIRAGFRQLPLEKELMQNLKLKIENGYDKNFD 741

Query: 673 IDEAGEWMLQGWKGRLAYALSFWKP 697
           +D+ G W+LQGWKGR+ YA S W P
Sbjct: 742 VDQNGNWLLQGWKGRIVYASSLWVP 766
Probable transcription factor involved in plant development.
Arabidopsis thaliana (taxid: 3702)
>sp|P0C883|SCL33_ARATH Scarecrow-like protein 33 OS=Arabidopsis thaliana GN=SCL33 PE=3 SV=1 Back     alignment and function description
>sp|Q9LTI5|SCL11_ARATH Scarecrow-like protein 11 OS=Arabidopsis thaliana GN=SCL11 PE=2 SV=1 Back     alignment and function description
>sp|O80933|SCL9_ARATH Scarecrow-like protein 9 OS=Arabidopsis thaliana GN=SCL9 PE=2 SV=1 Back     alignment and function description
>sp|P0C884|SCL34_ARATH Scarecrow-like protein 34 OS=Arabidopsis thaliana GN=SCL34 PE=3 SV=1 Back     alignment and function description
>sp|Q9SNB8|SCL30_ARATH Scarecrow-like protein 30 OS=Arabidopsis thaliana GN=SCL30 PE=2 SV=1 Back     alignment and function description
>sp|Q3EDH0|SCL31_ARATH Scarecrow-like protein 31 OS=Arabidopsis thaliana GN=SCL31 PE=2 SV=3 Back     alignment and function description
>sp|Q8H125|SCL5_ARATH Scarecrow-like protein 5 OS=Arabidopsis thaliana GN=SCL5 PE=2 SV=1 Back     alignment and function description
>sp|Q69VG1|CIGR1_ORYSJ Chitin-inducible gibberellin-responsive protein 1 OS=Oryza sativa subsp. japonica GN=CIGR1 PE=2 SV=1 Back     alignment and function description
>sp|Q9M0M5|SCL13_ARATH Scarecrow-like protein 13 OS=Arabidopsis thaliana GN=SCL13 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query700
224106445713 GRAS family transcription factor [Populu 0.975 0.957 0.569 0.0
255586180688 transcription factor, putative [Ricinus 0.964 0.981 0.562 0.0
224059472712 GRAS family transcription factor [Populu 0.971 0.955 0.565 0.0
255586178663 Chitin-inducible gibberellin-responsive 0.918 0.969 0.524 0.0
302399055684 SCL domain class transcription factor [M 0.961 0.983 0.521 0.0
302399039672 SCL domain class transcription factor [M 0.834 0.869 0.551 0.0
356544570687 PREDICTED: scarecrow-like protein 9-like 0.961 0.979 0.517 0.0
225434901704 PREDICTED: scarecrow-like protein 14 [Vi 0.957 0.951 0.511 0.0
225440386743 PREDICTED: scarecrow-like protein 9 [Vit 0.908 0.855 0.519 0.0
356541220680 PREDICTED: scarecrow-like protein 14-lik 0.93 0.957 0.514 0.0
>gi|224106445|ref|XP_002314168.1| GRAS family transcription factor [Populus trichocarpa] gi|222850576|gb|EEE88123.1| GRAS family transcription factor [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  775 bits (2000), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 416/730 (56%), Positives = 519/730 (71%), Gaps = 47/730 (6%)

Query: 1   MKTLVEEFSGSMKNPLQFDRGSVSTYSNRNHVDKFKLKQSREPIDPPLPPSASLQNNQNP 60
           M TL++E+  SM N   FD  SVS  SNRN  + ++L  +   +  P P   S   N  P
Sbjct: 1   MDTLLQEYPNSM-NRFMFDHASVSFSSNRNLFNGYQLNDT---MSDPNPSFNSF--NPEP 54

Query: 61  PSDSDSSSTM-----SSYGDPADICELSNTTLKFISEILMEEDLEGKTCMLQDCLALQAA 115
           P+DS SSS+        YG P++     N TLKFIS++L+EEDLEGKTCMLQDCLALQAA
Sbjct: 55  PNDSTSSSSSSNSCSEGYG-PSN-----NVTLKFISDVLLEEDLEGKTCMLQDCLALQAA 108

Query: 116 EKSFYDVLGQKYPPSPNQISPCSSRNSETLNDYCT--SGSTSVN------NLFEP-NWMS 166
           EK FYDVLGQ+YP S NQI  C  +  E+ ++  T  SG  S N      NL E  +W+ 
Sbjct: 109 EKPFYDVLGQEYPHSSNQILSCFDKKFESPDNGFTWSSGIDSSNSNPPGNNLVEKSDWIF 168

Query: 167 NQGDSSSSITQTN-LFNSPESVLVPNLFS---------------TGSSFLLNDNTAIINS 210
           +Q D      QT+ +     ++L P+L S                  +FL  ++  +++S
Sbjct: 169 DQADLDLYQVQTSPVLPLERTLLAPDLHSPVHPHPFEVLSKGGGEADNFLSGNDYFMVSS 228

Query: 211 TSDSAKSPEGEDRTYSSPYGSRGRKYDELEDSDYLEEGRSNKQSALSPPENEPLEMYDEV 270
            S+S+  P+ ++  YS+   SRGRK  + EDSD LEE RS K SALSP E+E  E+ DEV
Sbjct: 229 KSNSSNPPDKDEGDYST-NSSRGRKNHQREDSDDLEEERSKKHSALSPAESELSELLDEV 287

Query: 271 VLCKCENNKSTVCLIHGYVQNGSSGKLQQNGQPKGSSSATTRSRRKGKKSEVVDLWTLLT 330
           +LC    N+ST C + G  QNG++G    N Q KGS+  TTR +++GKK EVVDL +LL 
Sbjct: 288 LLCPVAQNESTPCSLLGNSQNGAAG----NEQRKGSNGRTTRGKKRGKKGEVVDLSSLLI 343

Query: 331 LCAQAVANYDQRTANDFLKQIRQHSSPFGDGIQRLAHYFANGLEVRLAGTRTPVQTHLAS 390
            CAQAVA  DQRTA++ L+QIRQHSS FGD  QRLAHYFAN L+ RLAGT TP  T   +
Sbjct: 344 QCAQAVAIGDQRTASEILQQIRQHSSSFGDANQRLAHYFANALDTRLAGTTTPTFTLFVN 403

Query: 391 SRASAAEVLQAYKVYVSSCPFNRMTFFMANRMILKLAEKATRLHIVDFGIGYGFQWPCLI 450
            R SAAE+L+AY+VYV +CPF RM+ F ANR ILKL +KATRLHI+DFGI YGFQWPCLI
Sbjct: 404 PRTSAAEILKAYQVYVRACPFKRMSNFFANRTILKLEKKATRLHIIDFGILYGFQWPCLI 463

Query: 451 QRISKRPGGPPKIRMTAIEFPQPGFKPAERVEETGHRLKCYSQRFGVPFEYNTIAQKWQN 510
           QR+S+RPGGPPK+R+T IE PQPGF+PAERVEETG RL+ Y +RF VPFEY  IAQKW+ 
Sbjct: 464 QRLSERPGGPPKLRITGIELPQPGFRPAERVEETGRRLERYCERFKVPFEYIPIAQKWET 523

Query: 511 IQLEDLKIDREEMTVVNCLYRMRNLPDDTVVINSPRDAVLELIKKINPDIFIHGVVNGTY 570
           I+ EDLKID++E  VVNCLYR+RNLPDDT+V NS RDAVL+LI KI PD+FIHGVVNG +
Sbjct: 524 IRYEDLKIDKDEKVVVNCLYRLRNLPDDTIVENSARDAVLKLINKIKPDMFIHGVVNGNF 583

Query: 571 NAPFFLPRFREALFHFSTFFDMFESTVPREDQGRMIFEREIYGKDAMNVIACEGIERVER 630
           NAPFF+ RFREAL+HFS+ FDMFE+TV RED+ RM+FE+E YG+D  NVIACEG  RVER
Sbjct: 584 NAPFFVTRFREALYHFSSLFDMFEATVSREDEHRMMFEKEQYGRDITNVIACEGKARVER 643

Query: 631 PETYKQWQARNLRAGFKQLELDKDILKTIRTLVKSNFHPDFVIDEAGEWMLQGWKGRLAY 690
           PETYKQWQ+RNLRAGF+QL LD+++ K +R++VKS +  DFV+D  G+W+LQGWKGR+ Y
Sbjct: 644 PETYKQWQSRNLRAGFRQLSLDQELFKDVRSVVKSEYDKDFVVDADGQWVLQGWKGRIIY 703

Query: 691 ALSFWKPVQD 700
           ALS WKPVQ+
Sbjct: 704 ALSVWKPVQE 713

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255586180|ref|XP_002533749.1| transcription factor, putative [Ricinus communis] gi|223526337|gb|EEF28636.1| transcription factor, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224059472|ref|XP_002299863.1| GRAS family transcription factor [Populus trichocarpa] gi|222847121|gb|EEE84668.1| GRAS family transcription factor [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255586178|ref|XP_002533748.1| Chitin-inducible gibberellin-responsive protein, putative [Ricinus communis] gi|223526336|gb|EEF28635.1| Chitin-inducible gibberellin-responsive protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|302399055|gb|ADL36822.1| SCL domain class transcription factor [Malus x domestica] Back     alignment and taxonomy information
>gi|302399039|gb|ADL36814.1| SCL domain class transcription factor [Malus x domestica] Back     alignment and taxonomy information
>gi|356544570|ref|XP_003540722.1| PREDICTED: scarecrow-like protein 9-like [Glycine max] Back     alignment and taxonomy information
>gi|225434901|ref|XP_002280765.1| PREDICTED: scarecrow-like protein 14 [Vitis vinifera] Back     alignment and taxonomy information
>gi|225440386|ref|XP_002267055.1| PREDICTED: scarecrow-like protein 9 [Vitis vinifera] Back     alignment and taxonomy information
>gi|356541220|ref|XP_003539078.1| PREDICTED: scarecrow-like protein 14-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query700
TAIR|locus:2040701718 AT2G37650 [Arabidopsis thalian 0.575 0.561 0.574 5.5e-143
TAIR|locus:2025022769 SCL14 "SCARECROW-like 14" [Ara 0.767 0.698 0.469 3.7e-135
TAIR|locus:2148293610 AT5G59450 [Arabidopsis thalian 0.632 0.726 0.515 7.5e-135
TAIR|locus:2075155583 AT3G46600 [Arabidopsis thalian 0.571 0.686 0.550 1.8e-131
TAIR|locus:2025032695 AT1G07520 "AT1G07520" [Arabido 0.864 0.870 0.406 1.6e-118
TAIR|locus:2008076597 SCL5 "AT1G50600" [Arabidopsis 0.767 0.899 0.279 2.1e-52
TAIR|locus:2164783490 PAT1 "AT5G48150" [Arabidopsis 0.531 0.759 0.304 1.9e-51
TAIR|locus:2026982593 SCL1 "AT1G21450" [Arabidopsis 0.562 0.664 0.316 2e-51
TAIR|locus:2044973413 SCL21 "AT2G04890" [Arabidopsis 0.518 0.878 0.32 2.5e-49
TAIR|locus:2099624547 RGL2 "RGA-like 2" [Arabidopsis 0.544 0.696 0.305 9.4e-44
TAIR|locus:2040701 AT2G37650 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1227 (437.0 bits), Expect = 5.5e-143, Sum P(2) = 5.5e-143
 Identities = 234/407 (57%), Positives = 294/407 (72%)

Query:   291 NGSSGKLQQNGQPKGSSSATTRSRRKGKKSEVVDLWTLLTLCAQAVANYDQRTANDFLKQ 350
             +   GK +  G+ +G        +  GKK EVVDL +LL  CAQAVA  D+R A   LKQ
Sbjct:   312 DAQGGKRRARGRGRGRGRGGGGGQN-GKK-EVVDLRSLLIHCAQAVAADDRRCAGQLLKQ 369

Query:   351 IRQHSSPFGDGIQRLAHYFANGLEVRLAGTRTPVQTHLASSRASAAEVLQAYKVYVSSCP 410
             IR HS+PFGDG QRLAH FANGLE RLAGT + +   + S   SAA VL+A++++++ CP
Sbjct:   370 IRLHSTPFGDGNQRLAHCFANGLEARLAGTGSQIYKGIVSKPRSAAAVLKAHQLFLACCP 429

Query:   411 FNRMTFFMANRMILKLAEKATRLHIVDFGIGYGFQWPCLIQRISKRPGGPPKIRMTAIEF 470
             F ++++F+ N+ I  L   + R+H++DFGI YGFQWP LI R S    G PK+R+T IEF
Sbjct:   430 FRKLSYFITNKTIRDLVGNSQRVHVIDFGILYGFQWPTLIHRFSMY--GSPKVRITGIEF 487

Query:   471 PQPGFKPAERVEETGHRLKCYSQRFGVPFEYNTIAQKWQNIQLEDLKIDREEMTVVNCLY 530
             PQPGF+PA+RVEETG RL  Y++ FGVPFEY  IA+KW  IQLEDL IDR+E+TVVNCLY
Sbjct:   488 PQPGFRPAQRVEETGQRLAAYAKLFGVPFEYKAIAKKWDAIQLEDLDIDRDEITVVNCLY 547

Query:   531 RMRNLPDDTVVINSPRDAVLELIKKINPDIFIHGVVNGTYNAPFFLPRFREALFHFSTFF 590
             R  NL D++V + S RD VL LI KINPD+F+ G+VNG YNAPFF+ RFREALFHFS+ F
Sbjct:   548 RAENLHDESVKVESCRDTVLNLIGKINPDLFVFGIVNGAYNAPFFVTRFREALFHFSSIF 607

Query:   591 DMFESTVPREDQGRMIFEREIYGKDAMNVIACEGIERVERPETYKQWQARNLRAGFKQLE 650
             DM E+ VPRED+ RM  E E++G++A+NVIACEG ERVERPETYKQW  R +R+G  Q+ 
Sbjct:   608 DMLETIVPREDEERMFLEMEVFGREALNVIACEGWERVERPETYKQWHVRAMRSGLVQVP 667

Query:   651 LDKDILKTIRTLVKSNFHPDFVIDEAGEWMLQGWKGRLAYALSFWKP 697
              D  I+KT    V + +H DFVID+   W+LQGWKGR   ALS WKP
Sbjct:   668 FDPSIMKTSLHKVHTFYHKDFVIDQDNRWLLQGWKGRTVMALSVWKP 714
GO:0005634 "nucleus" evidence=ISM
GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS
GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS
TAIR|locus:2025022 SCL14 "SCARECROW-like 14" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2148293 AT5G59450 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2075155 AT3G46600 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2025032 AT1G07520 "AT1G07520" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2008076 SCL5 "AT1G50600" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2164783 PAT1 "AT5G48150" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2026982 SCL1 "AT1G21450" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2044973 SCL21 "AT2G04890" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2099624 RGL2 "RGA-like 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query700
pfam03514372 pfam03514, GRAS, GRAS family transcription factor 1e-139
>gnl|CDD|217595 pfam03514, GRAS, GRAS family transcription factor Back     alignment and domain information 
 Score =  413 bits (1064), Expect = e-139
 Identities = 148/373 (39%), Positives = 224/373 (60%), Gaps = 8/373 (2%)

Query: 328 LLTLCAQAVANYDQRTANDFLKQIRQHSSPFGDGIQRLAHYFANGLEVRLAGTRTPVQTH 387
           LL  CA+AV++ D   A   L ++ Q +SP GD +QRLA YF   L  RLA + + + + 
Sbjct: 4   LLLACAEAVSSGDLSLAQAILARLNQLASPAGDPMQRLAAYFTEALAARLARSGSSIYSA 63

Query: 388 LASSRAS---AAEVLQAYKVYVSSCPFNRMTFFMANRMILKLAEKATRLHIVDFGIGYGF 444
           L  S ++   + EVL AYK++    P+ +   F AN+ IL+  E   R+HI+DF IG G 
Sbjct: 64  LPPSPSTPSDSVEVLAAYKLFYEVSPYLKFGHFTANQAILEAFEGEERVHIIDFDIGQGL 123

Query: 445 QWPCLIQRISKRPGGPPKIRMTAIEFPQPGFKPAERVEETGHRLKCYSQRFGVPFEYNT- 503
           QWP LIQ ++ RPGGPP +R+T I  PQ  F  AE +EETG RL  ++   GVPFE+N  
Sbjct: 124 QWPSLIQALASRPGGPPHLRITGIGSPQ--FSSAEELEETGDRLAQFADSLGVPFEFNPL 181

Query: 504 IAQKWQNIQLEDLKIDREEMTVVNCLYRMRNLPDDTVVINSPRDAVLELIKKINPDIFIH 563
           +A++ +++ LE L +   E   VNC++ +  L D++V + SP    L L+K +NP +   
Sbjct: 182 VAKRLEDLDLEMLDVRPGEALAVNCVFALHRLLDESVSLESP--TFLRLVKSLNPKVVTL 239

Query: 564 GVVNGTYNAPFFLPRFREALFHFSTFFDMFESTVPREDQGRMIFEREIYGKDAMNVIACE 623
                 +N+  FL RF EAL ++S  FD  E+T+PR+ + R   ERE+ G++ +NV+ACE
Sbjct: 240 VEQEANHNSAPFLARFVEALHYYSALFDSLEATLPRDSEERRKVERELLGREIVNVVACE 299

Query: 624 GIERVERPETYKQWQARNLRAGFKQLELDKDILKTIRTLVKSNFHPDFVIDEAGEWMLQG 683
           G ERVER ET+ +W+ R  RAGF+ + L +  +K  + L++  +   + ++E    ++ G
Sbjct: 300 GAERVERHETFGKWRERMRRAGFRPVPLSEFAVKQAKLLLRLYYVDGYRVEEDNGSLVLG 359

Query: 684 WKGRLAYALSFWK 696
           WKGR   A S W+
Sbjct: 360 WKGRPLVAASAWR 372

Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable amino-terminus and a highly conserved carboxyl-terminus that contains five recognisable motifs. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction. Length = 372

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 700
PF03514374 GRAS: GRAS domain family; InterPro: IPR005202 Sequ 100.0
PRK15451247 tRNA cmo(5)U34 methyltransferase; Provisional 97.01
TIGR02752231 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me 96.18
TIGR00740239 methyltransferase, putative. A simple BLAST search 95.98
PRK14103255 trans-aconitate 2-methyltransferase; Provisional 95.3
TIGR02716306 C20_methyl_CrtF C-20 methyltransferase BchU. Membe 94.75
PLN02233261 ubiquinone biosynthesis methyltransferase 94.09
COG2226238 UbiE Methylase involved in ubiquinone/menaquinone 93.49
PRK06202232 hypothetical protein; Provisional 93.21
TIGR01934223 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis 92.7
PF13489161 Methyltransf_23: Methyltransferase domain; PDB: 3J 92.25
PF13847152 Methyltransf_31: Methyltransferase domain; PDB: 3T 90.93
PF01209233 Ubie_methyltran: ubiE/COQ5 methyltransferase famil 90.53
PRK08317241 hypothetical protein; Provisional 90.06
PTZ00098263 phosphoethanolamine N-methyltransferase; Provision 89.39
PRK00216239 ubiE ubiquinone/menaquinone biosynthesis methyltra 89.22
TIGR00477195 tehB tellurite resistance protein TehB. Part of a 88.62
PLN02585315 magnesium protoporphyrin IX methyltransferase 88.56
PF13649101 Methyltransf_25: Methyltransferase domain; PDB: 3B 88.48
PRK01683258 trans-aconitate 2-methyltransferase; Provisional 88.39
smart00138264 MeTrc Methyltransferase, chemotaxis proteins. Meth 87.0
PRK11207197 tellurite resistance protein TehB; Provisional 84.33
PLN02396322 hexaprenyldihydroxybenzoate methyltransferase 84.31
PLN02336475 phosphoethanolamine N-methyltransferase 83.31
PF09243274 Rsm22: Mitochondrial small ribosomal subunit Rsm22 83.07
PF0824195 Methyltransf_11: Methyltransferase domain; InterPr 82.43
PRK12335287 tellurite resistance protein TehB; Provisional 81.85
COG2227243 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4- 81.34
PLN02244340 tocopherol O-methyltransferase 80.03
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs [] Back     alignment and domain information 
Probab=100.00  E-value=6.2e-111  Score=909.09  Aligned_cols=370  Identities=40%  Similarity=0.750  Sum_probs=357.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHhhcCCCCCccccccCCCCC---HHHHHHH
Q 045051          325 LWTLLTLCAQAVANYDQRTANDFLKQIRQHSSPFGDGIQRLAHYFANGLEVRLAGTRTPVQTHLASSRAS---AAEVLQA  401 (700)
Q Consensus       325 L~~LLi~CAqAVa~~d~~~A~~lL~~Irq~sSp~GD~~QRLA~yFa~AL~aRL~gtgs~~y~~l~s~~~s---~~e~lkA  401 (700)
                      |++||++||+||+.||...|+.+|++|++++||+||++||||+||++||.+||.+++++.|..+.....+   ..++++|
T Consensus         1 L~~lLl~cA~Av~~~~~~~A~~lL~~l~~~as~~g~~~qRla~yF~eAL~~Rl~~~~~~~~~~~~~~~~~~~~~~~~~~a   80 (374)
T PF03514_consen    1 LVQLLLACAEAVAAGDFARAQELLARLRQLASPTGDPMQRLAAYFAEALAARLSGSGPGLYSALPPSSPSPSESSEQLAA   80 (374)
T ss_pred             CHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhhHHHHHhccCcccccCCCCccccccchHHHHHH
Confidence            6899999999999999999999999999999999999999999999999999999999999877554443   6789999


Q ss_pred             HHHHHhcCCccchhhHhhhHHHHHhhhhcCeeEEEEcccccccchHHHHHHHhcCCCCCCeEEEeeecCCCCCCCChHHH
Q 045051          402 YKVYVSSCPFNRMTFFMANRMILKLAEKATRLHIVDFGIGYGFQWPCLIQRISKRPGGPPKIRMTAIEFPQPGFKPAERV  481 (700)
Q Consensus       402 y~lf~~~~Pf~k~a~f~ANqaIleA~~g~~~VHIIDfgI~~G~QWp~Liq~La~R~gGPP~LRITgI~~pq~gfrpae~l  481 (700)
                      |++|++.|||.||+|||||||||||++|+++||||||||++|+|||+|||+||.|++|||+||||||+.|.++  +...+
T Consensus        81 ~~~~~~~~P~~~fa~~taNqaIleA~~g~~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~--~~~~l  158 (374)
T PF03514_consen   81 YQLFYELSPFLKFAHFTANQAILEAFEGERRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSG--SADEL  158 (374)
T ss_pred             HHHHHHHhhHHhhhhhchhHHHHHHhccCcceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCC--cHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999887  68899


Q ss_pred             HHHHHHHHHHHhhcCCcEEEEee-cccccccCccccccCCCCeEEEEeecccccCCCCccccCCcHHHHHHHHHhhCCcE
Q 045051          482 EETGHRLKCYSQRFGVPFEYNTI-AQKWQNIQLEDLKIDREEMTVVNCLYRMRNLPDDTVVINSPRDAVLELIKKINPDI  560 (700)
Q Consensus       482 eeTGrRL~~~A~~~gVpFeF~~I-a~~~E~i~~edL~i~~dE~LaVN~~~~L~~L~Desv~~~spRd~vL~~IR~L~P~V  560 (700)
                      ++||+||.+||+++||||||++| ..+||++++++|++++||+|||||+|+||||.|++....+||+.||+.||+|+|+|
T Consensus       159 ~~~g~rL~~fA~~lgv~fef~~v~~~~~e~l~~~~l~~~~~E~laVn~~~~Lh~l~~~~~~~~~~~~~~L~~ir~L~P~v  238 (374)
T PF03514_consen  159 QETGRRLAEFARSLGVPFEFHPVVVESLEDLDPSMLRLRPGEALAVNCMFQLHHLLDESGALENPRDAFLRVIRSLNPKV  238 (374)
T ss_pred             HHHHHHHHHHHHHcCccEEEEecccCchhhCCHHHhCccCCcEEEEEeehhhhhhccccccccchHHHHHHHHHhcCCCE
Confidence            99999999999999999999996 68999999999999999999999999999999998888889999999999999999


Q ss_pred             EEEEeecCCCCCCCchHHHHHHHhhhHHHhHhhhhcCCCCCHHHHHHHHHHHhhccchhhhccCCcccccccchhHHHHH
Q 045051          561 FIHGVVNGTYNAPFFLPRFREALFHFSTFFDMFESTVPREDQGRMIFEREIYGKDAMNVIACEGIERVERPETYKQWQAR  640 (700)
Q Consensus       561 fv~~e~ng~~nsp~F~~RF~EAL~yYSAlFDsLdat~pr~~~eR~~iEr~~~greI~NvVAcEG~~RvER~Ety~qWq~R  640 (700)
                      ||++|+|++||+|+|++||.|||+||+|+|||||+++|+++++|+.+|+.+||++|+|||||||.+|+||||++++|+.|
T Consensus       239 vv~~E~ea~~n~~~F~~RF~eal~yYsalfdsle~~~~~~~~~r~~~E~~~~~~eI~niVa~eg~~R~eR~e~~~~W~~r  318 (374)
T PF03514_consen  239 VVLVEQEADHNSPSFLERFREALHYYSALFDSLEACLPRDSEERLAVERLFFGREIMNIVACEGEERVERHERLEQWRRR  318 (374)
T ss_pred             EEEEeecCCCCCCchHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhhhHHHHhhhcccccccccccchhHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhCCCccccCCHHHHHHHHHHHHhcCCCCcEEEecCCEEEEeeCCceeEEEeeee
Q 045051          641 NLRAGFKQLELDKDILKTIRTLVKSNFHPDFVIDEAGEWMLQGWKGRLAYALSFWK  696 (700)
Q Consensus       641 ~~rAGF~~lpLs~~~v~qak~ll~~~y~k~f~v~ed~~wLlLgWKgr~L~a~SaW~  696 (700)
                      |.+|||+++||++.++.|||.+|+.+++++|.|+++++||+|||||+||+++|+||
T Consensus       319 ~~~aGF~~~~ls~~~~~qa~~ll~~~~~~g~~v~~~~~~l~L~Wk~~pL~~~SaWr  374 (374)
T PF03514_consen  319 MRRAGFRPVPLSEFAVSQAKLLLRKFPGDGYTVEEDGGCLLLGWKGRPLVAASAWR  374 (374)
T ss_pred             HHhcCCeecCCCHHHHHHHHHHHhccCCCCeEEEEcCCEEEEEeCCcEEEEEeCcC
Confidence            99999999999999999999999976668999999999999999999999999997

Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional Back     alignment and domain information
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase Back     alignment and domain information
>TIGR00740 methyltransferase, putative Back     alignment and domain information
>PRK14103 trans-aconitate 2-methyltransferase; Provisional Back     alignment and domain information
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU Back     alignment and domain information
>PLN02233 ubiquinone biosynthesis methyltransferase Back     alignment and domain information
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] Back     alignment and domain information
>PRK06202 hypothetical protein; Provisional Back     alignment and domain information
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases Back     alignment and domain information
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C Back     alignment and domain information
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A Back     alignment and domain information
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities [] Back     alignment and domain information
>PRK08317 hypothetical protein; Provisional Back     alignment and domain information
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional Back     alignment and domain information
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed Back     alignment and domain information
>TIGR00477 tehB tellurite resistance protein TehB Back     alignment and domain information
>PLN02585 magnesium protoporphyrin IX methyltransferase Back     alignment and domain information
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A Back     alignment and domain information
>PRK01683 trans-aconitate 2-methyltransferase; Provisional Back     alignment and domain information
>smart00138 MeTrc Methyltransferase, chemotaxis proteins Back     alignment and domain information
>PRK11207 tellurite resistance protein TehB; Provisional Back     alignment and domain information
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase Back     alignment and domain information
>PLN02336 phosphoethanolamine N-methyltransferase Back     alignment and domain information
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms Back     alignment and domain information
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals Back     alignment and domain information
>PRK12335 tellurite resistance protein TehB; Provisional Back     alignment and domain information
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] Back     alignment and domain information
>PLN02244 tocopherol O-methyltransferase Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query700
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-12
1coz_A129 Protein (glycerol-3-phosphate cytidylyltransferase 3e-04
2b7l_A132 Glycerol-3-phosphate cytidylyltransferase; rossman 6e-04
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 70.3 bits (171), Expect = 1e-12
 Identities = 107/615 (17%), Positives = 178/615 (28%), Gaps = 179/615 (29%)

Query: 170 DSSSSITQT----NLFNSPESV-----LVPNLFSTGSS----FL---LNDNTA-IINSTS 212
           D   SI       ++  S ++V     L   L S        F+   L  N   +++   
Sbjct: 40  DMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIK 99

Query: 213 DSAKSPEGEDRTYSSPYGSRGRKYDELEDSDYLEEGRSNKQSALSPPENEP-LEMYDEV- 270
              + P    R Y      R R Y+   D+                  N   L+ Y ++ 
Sbjct: 100 TEQRQPSMMTRMYIE---QRDRLYN---DNQVF------------AKYNVSRLQPYLKLR 141

Query: 271 -VLCKCENNKSTVCLIHGYVQNGSSGKLQQNGQPKGSS--SATTRSRR------------ 315
             L +    K+ +  I G      SGK         +        S +            
Sbjct: 142 QALLELRPAKNVL--IDGV---LGSGK---------TWVALDVCLSYKVQCKMDFKIFWL 187

Query: 316 --KGKKSEVVDLWTLLTLCAQAVANYDQRTANDFLKQIRQHSSPFGDGIQRL--AHYFAN 371
             K   S    L  L  L  Q   N+  R  +D    I+         ++RL  +  + N
Sbjct: 188 NLKNCNSPETVLEMLQKLLYQIDPNWTSR--SDHSSNIKLRIHSIQAELRRLLKSKPYEN 245

Query: 372 GLEVRLAGTRTP---------VQTHLASSR-ASAAEVLQAYKVYVSSCPFNRMTFFMANR 421
            L V L   +            +  L ++R     + L A      S   + MT      
Sbjct: 246 CLLV-LLNVQNAKAWNAFNLSCKI-LLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEV 303

Query: 422 MIL----------KLAEKATR---LHIVDFGIGYGFQ-WPCLIQRISKRPGGPPKIRMTA 467
             L           L  +        +    I    +          K          T 
Sbjct: 304 KSLLLKYLDCRPQDLPREVLTTNPRRLS--IIAESIRDGLATWDNW-KHVNCDKL--TTI 358

Query: 468 IEFPQPGFKPAERVEETGHRLKCYSQRFGVPFEYNT-IAQK-----WQNIQLEDLKIDRE 521
           IE      +PAE      +R K +  R  V F  +  I        W ++      I  +
Sbjct: 359 IESSLNVLEPAE------YR-KMF-DRLSV-FPPSAHIPTILLSLIWFDV------IKSD 403

Query: 522 EMTVVNCLYRM----RNLPDDTVVINSPRDAVLELIKKINPDIFIHGVVNGTYNAP---- 573
            M VVN L++     +   + T+ I       LEL  K+  +  +H  +   YN P    
Sbjct: 404 VMVVVNKLHKYSLVEKQPKESTISIP---SIYLELKVKLENEYALHRSIVDHYNIPKTFD 460

Query: 574 ---FFLPRFREALF-----HFSTF-----FDMFESTVPREDQGRMIF------EREIYGK 614
                 P   +  +     H           +F          RM+F      E++I   
Sbjct: 461 SDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLF----------RMVFLDFRFLEQKIR-H 509

Query: 615 DAMNVIACEGI-ERVERPETYKQWQARNLRAGFKQLELD-KDILKTIRT-LVKSNF---- 667
           D+    A   I   +++ + YK +   N    +++L     D L  I   L+ S +    
Sbjct: 510 DSTAWNASGSILNTLQQLKFYKPYICDNDPK-YERLVNAILDFLPKIEENLICSKYTDLL 568

Query: 668 -----HP-DFVIDEA 676
                   + + +EA
Sbjct: 569 RIALMAEDEAIFEEA 583
>1coz_A Protein (glycerol-3-phosphate cytidylyltransferase); HET: CTP; 2.00A {Bacillus subtilis} SCOP: c.26.1.2 PDB: 1n1d_A* Length = 129 Back     alignment and structure
>2b7l_A Glycerol-3-phosphate cytidylyltransferase; rossmann fold; 3.00A {Staphylococcus aureus} Length = 132 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query700
4gek_A261 TRNA (CMO5U34)-methyltransferase; structural genom 97.38
3dtn_A234 Putative methyltransferase MM_2633; structural gen 96.46
2aot_A292 HMT, histamine N-methyltransferase; classic methyl 96.29
3dlc_A219 Putative S-adenosyl-L-methionine-dependent methylt 95.75
3dh0_A219 SAM dependent methyltransferase; cystal structure, 95.65
1vl5_A260 Unknown conserved protein BH2331; putative methylt 95.49
3dp7_A363 SAM-dependent methyltransferase; structural genomi 95.49
4a6d_A353 Hydroxyindole O-methyltransferase; melatonin, circ 95.42
3bkx_A275 SAM-dependent methyltransferase; YP_807781.1, cycl 95.17
3htx_A950 HEN1; HEN1, small RNA methyltransferase, protein-R 95.15
3h2b_A203 SAM-dependent methyltransferase; alpha-beta protei 94.23
3f4k_A257 Putative methyltransferase; structural genomics, P 94.14
1xxl_A239 YCGJ protein; structural genomics, protein structu 94.14
3mgg_A276 Methyltransferase; NYSGXRC, PSI-II, protein struct 94.08
3ujc_A266 Phosphoethanolamine N-methyltransferase; parasite; 93.85
3mcz_A352 O-methyltransferase; adomet_mtases, S-adenosylmeth 93.77
3jwg_A219 HEN1, methyltransferase type 12; 1.90A {Clostridiu 93.55
3ccf_A279 Cyclopropane-fatty-acyl-phospholipid synthase; YP_ 93.28
1xtp_A254 LMAJ004091AAA; SGPP, structural genomics, PSI, pro 93.22
2ip2_A334 Probable phenazine-specific methyltransferase; pyo 93.14
3i53_A332 O-methyltransferase; CO-complex, rossmann-like fol 93.12
3kkz_A267 Uncharacterized protein Q5LES9; putative methyltra 92.96
3vc1_A312 Geranyl diphosphate 2-C-methyltransferase; rossman 92.58
3gwz_A369 MMCR; methyltransferase, mitomycin, S-adenosyl met 92.38
3bus_A273 REBM, methyltransferase; rebeccamycin synthesis; H 92.09
3l8d_A242 Methyltransferase; structural genomics, PSI, nysgr 92.07
4fsd_A383 Arsenic methyltransferase; rossmann fold; 1.75A {C 91.85
3jwh_A217 HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena 91.8
2r3s_A335 Uncharacterized protein; methyltransferase domain, 91.72
1x19_A359 CRTF-related protein; methyltransferase, bacterioc 90.88
3reo_A368 (ISO)eugenol O-methyltransferase; directed evoluti 90.76
3e23_A211 Uncharacterized protein RPA2492; alpha-beta protei 90.59
2ex4_A241 Adrenal gland protein AD-003; methyltransferase, s 90.22
3p9c_A364 Caffeic acid O-methyltransferase; S-adenosylmethio 89.84
1qzz_A374 RDMB, aclacinomycin-10-hydroxylase; anthracycline, 89.36
3sm3_A235 SAM-dependent methyltransferases; NESG, structural 88.55
2o57_A297 Putative sarcosine dimethylglycine methyltransfera 88.44
3lst_A348 CALO1 methyltransferase; calicheamicin, enediyne, 88.4
3ocj_A305 Putative exported protein; structural genomics, PS 88.21
3g5l_A253 Putative S-adenosylmethionine dependent methyltran 88.2
3m70_A286 Tellurite resistance protein TEHB homolog; structu 88.19
3lcc_A235 Putative methyl chloride transferase; halide methy 87.72
1kpg_A287 CFA synthase;, cyclopropane-fatty-acyl-phospholipi 87.36
1fp1_D372 Isoliquiritigenin 2'-O-methyltransferase; protein- 87.15
3dli_A240 Methyltransferase; PSI-II, NYSGXRC, structural gen 86.47
1tw3_A360 COMT, carminomycin 4-O-methyltransferase; anthracy 85.94
3lcv_B281 Sisomicin-gentamicin resistance methylase SGM; ant 85.62
1nkv_A256 Hypothetical protein YJHP; structural genomics, PS 85.55
2xvm_A199 Tellurite resistance protein TEHB; antibiotic resi 85.51
2qe6_A274 Uncharacterized protein TFU_2867; putative methylt 84.24
3ou2_A218 SAM-dependent methyltransferase; O-methyltransfera 84.22
4e2x_A416 TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s 84.21
3hnr_A220 Probable methyltransferase BT9727_4108; structural 83.58
2zfu_A215 Nucleomethylin, cerebral protein 1; nucleolar prot 83.51
3u81_A221 Catechol O-methyltransferase; neurotransmitter deg 83.12
3g5t_A299 Trans-aconitate 3-methyltransferase; structural ge 82.95
3i9f_A170 Putative type 11 methyltransferase; structural gen 82.87
3ofk_A216 Nodulation protein S; NODS, N-methyltransferase, S 82.4
2yqz_A263 Hypothetical protein TTHA0223; RNA methyltransfera 82.14
2p7i_A250 Hypothetical protein; putative methyltransferase, 82.01
1zg3_A358 Isoflavanone 4'-O-methyltransferase; rossman fold, 81.94
3mq2_A218 16S rRNA methyltransferase; methyltranferase, ribo 81.3
3uwp_A438 Histone-lysine N-methyltransferase, H3 lysine-79; 81.25
4htf_A285 S-adenosylmethionine-dependent methyltransferase; 81.12
3thr_A293 Glycine N-methyltransferase; GNMT, folate, methylt 80.97
3hem_A302 Cyclopropane-fatty-acyl-phospholipid synthase 2; p 80.95
2vdw_A302 Vaccinia virus capping enzyme D1 subunit; nucleoti 80.38
>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A* Back     alignment and structure
Probab=97.38  E-value=0.002  Score=65.61  Aligned_cols=108  Identities=16%  Similarity=0.295  Sum_probs=65.1

Q ss_pred             CeeEEEEcccccccchHHHHHHHhcCCCCCCeEEEeeecCCCCCCCChHHHHHHHHHHHHHHhhcCCcEEEEeecccccc
Q 045051          431 TRLHIVDFGIGYGFQWPCLIQRISKRPGGPPKIRMTAIEFPQPGFKPAERVEETGHRLKCYSQRFGVPFEYNTIAQKWQN  510 (700)
Q Consensus       431 ~~VHIIDfgI~~G~QWp~Liq~La~R~gGPP~LRITgI~~pq~gfrpae~leeTGrRL~~~A~~~gVpFeF~~Ia~~~E~  510 (700)
                      ..-+|+|+|.+.|    .+...|+.+ .++|..+|||||..      .+.|+.+.+++.++..  ..+.+|.  ....++
T Consensus        70 ~~~~vLDlGcGtG----~~~~~la~~-~~~~~~~v~gvD~s------~~ml~~A~~~~~~~~~--~~~v~~~--~~D~~~  134 (261)
T 4gek_A           70 PGTQVYDLGCSLG----AATLSVRRN-IHHDNCKIIAIDNS------PAMIERCRRHIDAYKA--PTPVDVI--EGDIRD  134 (261)
T ss_dssp             TTCEEEEETCTTT----HHHHHHHHT-CCSSSCEEEEEESC------HHHHHHHHHHHHTSCC--SSCEEEE--ESCTTT
T ss_pred             CCCEEEEEeCCCC----HHHHHHHHh-cCCCCCEEEEEECC------HHHHHHHHHHHHhhcc--CceEEEe--eccccc
Confidence            4458999999999    344556654 34567899999973      4557766666654322  2344543  223333


Q ss_pred             cCccccccCCCCeEEEEeecccccCCCCccccCCcHHHHHHHH-HhhCCcE-EEEEee
Q 045051          511 IQLEDLKIDREEMTVVNCLYRMRNLPDDTVVINSPRDAVLELI-KKINPDI-FIHGVV  566 (700)
Q Consensus       511 i~~edL~i~~dE~LaVN~~~~L~~L~Desv~~~spRd~vL~~I-R~L~P~V-fv~~e~  566 (700)
                           +....  +=+|-|.+.|||+.++      -|..+|+.| |.|+|.- |++.+.
T Consensus       135 -----~~~~~--~d~v~~~~~l~~~~~~------~~~~~l~~i~~~LkpGG~lii~e~  179 (261)
T 4gek_A          135 -----IAIEN--ASMVVLNFTLQFLEPS------ERQALLDKIYQGLNPGGALVLSEK  179 (261)
T ss_dssp             -----CCCCS--EEEEEEESCGGGSCHH------HHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             -----ccccc--cccceeeeeeeecCch------hHhHHHHHHHHHcCCCcEEEEEec
Confidence                 33322  2234456788888643      255788877 7799976 444444
>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} Back     alignment and structure
>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* Back     alignment and structure
>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} Back     alignment and structure
>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} Back     alignment and structure
>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 Back     alignment and structure
>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} Back     alignment and structure
>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A* Back     alignment and structure
>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} Back     alignment and structure
>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} Back     alignment and structure
>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} Back     alignment and structure
>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* Back     alignment and structure
>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* Back     alignment and structure
>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} Back     alignment and structure
>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* Back     alignment and structure
>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} Back     alignment and structure
>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A Back     alignment and structure
>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} Back     alignment and structure
>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 Back     alignment and structure
>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} Back     alignment and structure
>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* Back     alignment and structure
>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* Back     alignment and structure
>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A* Back     alignment and structure
>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* Back     alignment and structure
>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} Back     alignment and structure
>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis} Back     alignment and structure
>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A Back     alignment and structure
>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A Back     alignment and structure
>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} Back     alignment and structure
>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* Back     alignment and structure
>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A* Back     alignment and structure
>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} Back     alignment and structure
>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 Back     alignment and structure
>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* Back     alignment and structure
>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* Back     alignment and structure
>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} Back     alignment and structure
>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 Back     alignment and structure
>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} Back     alignment and structure
>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} Back     alignment and structure
>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} Back     alignment and structure
>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} Back     alignment and structure
>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} Back     alignment and structure
>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* Back     alignment and structure
>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* Back     alignment and structure
>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} Back     alignment and structure
>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* Back     alignment and structure
>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A* Back     alignment and structure
>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 Back     alignment and structure
>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* Back     alignment and structure
>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca} Back     alignment and structure
>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* Back     alignment and structure
>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A* Back     alignment and structure
>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} Back     alignment and structure
>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} Back     alignment and structure
>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ... Back     alignment and structure
>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} Back     alignment and structure
>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} Back     alignment and structure
>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* Back     alignment and structure
>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A Back     alignment and structure
>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A Back     alignment and structure
>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* Back     alignment and structure
>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP} Back     alignment and structure
>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A* Back     alignment and structure
>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli} Back     alignment and structure
>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* Back     alignment and structure
>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A* Back     alignment and structure
>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query700
d1im8a_225 Hypothetical protein HI0319 (YecO) {Haemophilus in 97.56
d1qzza2256 Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu 96.77
d1tw3a2253 Carminomycin 4-O-methyltransferase {Streptomyces p 96.49
d1jqea_280 Histamine methyltransferase {Human (Homo sapiens) 96.25
d1vl5a_231 Hypothetical protein BH2331 {Bacillus halodurans [ 95.14
d1vlma_208 Possible histamine N-methyltransferase TM1293 {The 94.94
d1xxla_234 Hypothetical protein YcgJ {Bacillus subtilis [TaxI 94.9
d1nkva_245 Hypothetical Protein YjhP {Escherichia coli [TaxId 94.85
d1fp2a2244 Isoflavone O-methyltransferase {Alfalfa (Medicago 94.79
d1fp1d2244 Chalcone O-methyltransferase {Alfalfa (Medicago sa 94.78
d1ve3a1226 Hypothetical protein PH0226 {Archaeon Pyrococcus h 94.52
d2gh1a1281 Methyltransferase BC2162 {Bacillus cereus [TaxId: 93.87
d2i6ga1198 Putative methyltransferase TehB {Salmonella typhim 93.68
d2fk8a1280 Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri 93.58
d2ex4a1222 Adrenal gland protein AD-003 (C9orf32) {Human (Hom 92.34
d2o57a1282 Putative sarcosine dimethylglycine methyltransfera 91.85
d1xtpa_254 Hypothetical protein Lmaj004091aaa (LmjF30.0810) { 90.93
d2avna1246 Hypothetical methyltransferase TM1389 {Thermotoga 87.7
d1y8ca_246 Putative methyltransferase CAC2371 {Clostridium ac 86.46
d1ri5a_252 mRNA cap (Guanine N-7) methyltransferase {Fungus ( 84.62
d1xvaa_292 Glycine N-methyltransferase {Rat (Rattus norvegicu 80.73
>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=97.56  E-value=0.0029  Score=59.67  Aligned_cols=109  Identities=15%  Similarity=0.284  Sum_probs=66.1

Q ss_pred             cCeeEEEEcccccccchHHHHHHHhcCCCCCCeEEEeeecCCCCCCCChHHHHHHHHHHHHHHhhcCCcEEEEeeccccc
Q 045051          430 ATRLHIVDFGIGYGFQWPCLIQRISKRPGGPPKIRMTAIEFPQPGFKPAERVEETGHRLKCYSQRFGVPFEYNTIAQKWQ  509 (700)
Q Consensus       430 ~~~VHIIDfgI~~G~QWp~Liq~La~R~gGPP~LRITgI~~pq~gfrpae~leeTGrRL~~~A~~~gVpFeF~~Ia~~~E  509 (700)
                      .+.-||+|+|.|.|    .+...|+.. -..|..+|||||+.      .+.++.+.+++.+    .+....++.+.... 
T Consensus        38 ~~~~~vLDlGCGtG----~~~~~l~~~-~~~~~~~v~giD~S------~~ml~~A~~~~~~----~~~~~~~~~~~~d~-  101 (225)
T d1im8a_          38 TADSNVYDLGCSRG----AATLSARRN-INQPNVKIIGIDNS------QPMVERCRQHIAA----YHSEIPVEILCNDI-  101 (225)
T ss_dssp             CTTCEEEEESCTTC----HHHHHHHHT-CCCSSCEEEEECSC------HHHHHHHHHHHHT----SCCSSCEEEECSCT-
T ss_pred             CCCCEEEEeccchh----hHHHHHHHh-hcCCCCceEEeCCC------HHHHHHHHHHhHh----hcccchhhhccchh-
Confidence            34569999999998    334445543 23567999999973      4556666555553    33333333332221 


Q ss_pred             ccCccccccCCCCeEEEEeecccccCCCCccccCCcHHHHHHHH-HhhCCcE-EEEEee
Q 045051          510 NIQLEDLKIDREEMTVVNCLYRMRNLPDDTVVINSPRDAVLELI-KKINPDI-FIHGVV  566 (700)
Q Consensus       510 ~i~~edL~i~~dE~LaVN~~~~L~~L~Desv~~~spRd~vL~~I-R~L~P~V-fv~~e~  566 (700)
                            +....+..-+|.|.+.|||+..+-      +..+|+.| |.|+|.- |++.+.
T Consensus       102 ------~~~~~~~~d~i~~~~~l~~~~~~d------~~~~l~~i~~~LkpgG~li~~~~  148 (225)
T d1im8a_         102 ------RHVEIKNASMVILNFTLQFLPPED------RIALLTKIYEGLNPNGVLVLSEK  148 (225)
T ss_dssp             ------TTCCCCSEEEEEEESCGGGSCGGG------HHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             ------hccccccceeeEEeeeccccChhh------HHHHHHHHHHhCCCCceeecccc
Confidence                  122334455677888899986431      34777777 8899987 444443
>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} Back     information, alignment and structure
>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} Back     information, alignment and structure
>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} Back     information, alignment and structure
>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Back     information, alignment and structure
>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Back     information, alignment and structure
>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} Back     information, alignment and structure
>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} Back     information, alignment and structure
>d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} Back     information, alignment and structure
>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} Back     information, alignment and structure
>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} Back     information, alignment and structure
>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure