Citrus Sinensis ID: 045058

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000-----
Protein Sequence
MRNLKLGVQVVGAHNLLPKDGKGSSSAFVELYFDGQRFRTTIKENDLNPVWNESFYFNISDASKLHYLTLEAYIYNNIGDTNSRSFLGKVCLTGNSFVPLSDSVVLHYPLEKRGIFSHVRGELGLKVYITDDPSIKSSTPLPAAETFSTKDPSITHTHAQPVANPVTGDTVESRHTFHHLPNPNHHQHHHQHHPSTTVVNRHVPKYEADEMKSEPQPPKLVHMYSAASSQSADYALKETSPYLGGGKVVGGRVIHADKTASTYDLVERMYFLYVRVVKARELPAMDLTGSIDPFVEVKIGNYKGITKHYEKNQNPQWHQVFAFSRDRMQASVLEVVIKDKDLVKDDFVGIVRFDINEVPLRVPPDSPLAPEWYRLEDKKGEKIKGELMLAVWIGTQADEAFSDAWHSDAATPVDSTPAITAVIRSKVYHSPRLWYVRVNVVEAQDLVPTEKNHFPDVYVKAQIGNQVLKTKICQARTLSAVWNEDLLFVAAEPFEDHLVLTVEDRVGPGKDEIIGRVIIPLSAIEKRADERIIHSRWFNLEKPVAVDVDQLKKEKFSSRIHLRVCLDGGYHVLDESTHYSSDLRPTAKQLWRPSIGILELGILNAVGLHPMKTRDGRGTSDTYCVAKYGHKWVRTRTLVDNLSPKYNEQYTWEVFDPATVLTVGVFDNSQLGEKSNGNKDLKIGKVRIRISTLETGRIYTHSYPLLVLHPTGVKKMGELHLAIRFSCTSFANMLYLYSRPLLPKMHYVRPFSIMQLDMLRHQAVNIVAARLGRAEPPLRKEVVEYMSDVDSHLWSMRRSKANFFRLMTVFSGLFAVGKWFADICMWKNPITTVLVHVLYLMLACFPELILPTVFLYMFLIGIWNYRYRPRYPPHMNIKISQAEAVHPDELDEEFDTFPTSRSPELVRMRYDRLRSVAGRIQTVVGDVATQGERLQALISWRDPRATAIFITFCLVAALVLFLTPFQVIAALAGFWVMRHPRFRRRLPSVPINFFRRLPARTDSML
Secondary Structure (PSIPRED)
ccccEEEEEEEEcccccccccccccccEEEEEEccEEEEEEEEccccccccccEEEEEEEccccccccEEEEEEEEcccccccccccEEEEEEccccccccccEEEEEEcccccccccccEEEEEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEEEccccccccccccccEEEEEEccEEEEEEEEcccccccEEEEEEEEEEcccccEEEEEEEccccccccEEEEEEEEcccccccccccccccccccccccccccEEEEEEEEEEEEcccccccccccccccccccccccccEEEEEEcccccccccEEEEEEEEEEEcccccccccccccEEEEEEccEEEEEEEccccccccEEccEEEEEEEcccccEEEEEEEEEcccccccEEEEEEEEcccccccccccccccEEEEccccccccHHcccccEEEEEEEEEEEEccccccccccccccccccccccccccccccEEEEEEEEEcccccccccccccccccEEEEEEccEEEEEEEccccccccccEEEEEEEEccccEEEEEEEEccccccccccccccccEEEEEEccccccccEEEEEEEccccccccccEEEEEEEEEEEEEcccHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHEEEEEEEcccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccEEEEEEEEcccccccccccccccEEEEEEccccEEccccccccccEEEEEEEEEEcccccccccEEEEEEEEccccccccccEEEEEEEccccccccccccEEEEccccccccccEEEEEEEEEEEcccccccccccccHcccccccccccccHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEEcccccccccccccccEEEEEEcccEEEEEEEEccccccccEEEEEEcccccccEEEEEEEEccccccccEEEEEEEHHccccccccccccccccccccccccccccEEEEEEEEEccccccccHHHHHccccccccccccccccccccccccccEEEEEEEEEEcccccccccccccccEEEEEEccEEEEEEEEcccccccccccEEEEEEEcccccEEEEEEEEcccccccccEEEEEEEHHHcHcccccccccccEEccccccccccccccccccccEEEEEEEEccccccccccccccccccHHHHHHcccccEEEEEEEEEccccccccccccccccccEEEEEEcccEEEEEEEccccccccccEEEEEEEccccEEEEEEEEcccccccccccccccccEEEEEccEcccccEEEccEEcEEcccccccccEEEEEEEEEEcHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHccccccccccccccccHccccccHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHEEEEHHHHHHccccHccccccccHHHHHHccccccccc
Coil and Loop (DISEMBL)
MRNLKLGVQVVgahnllpkdgkgssSAFVELYFDgqrfrttikendlnpvwnesfyfnisdaskLHYLTLEAYIYNnigdtnsrsFLGKVcltgnsfvplsdsvvlhyplekrgifshvrgelglkvyitddpsiksstplpaaetfstkdpsiththaqpvanpvtgdtvesrhtfhhlpnpnhhqhhhqhhpsttvvnrhvpkyeademksepqppklvhmysaassqsadyalketspylgggkvvggrvihadktasTYDLVERMYFLYVRVVKArelpamdltgsidpfvevkignyKGITKHYeknqnpqwhQVFAFSRDRMQASVLEVVIkdkdlvkddFVGIVRfdinevplrvppdsplapewyrledkkgekiKGELMLAVWIGTQadeafsdawhsdaatpvdstpaITAVIRSkvyhsprlwYVRVNVVeaqdlvpteknhfpdvyVKAQIGNQVLKTKICQARTLSAVWNEDllfvaaepfedhLVLTvedrvgpgkdeiigrviiplsaiekraderiihsrwfnlekpvavdvdqlkkekfssrIHLRVCLdggyhvldesthyssdlrptakqlwrpsigilelgilnavglhpmktrdgrgtsdtycvakyghkwvrtrtlvdnlspkyneqytwevfdpatvltvgvfdnsqlgeksngnkdlkigkvRIRISTLetgriythsypllvlhptgvkkmgELHLAIRFSCTSFANMLYlysrpllpkmhyvrpfsIMQLDMLRHQAVNIVAArlgraepplrKEVVEYMSDVDSHLWSMRRSKANFFRLMTVFSGLFAVGKWFAdicmwknpiTTVLVHVLYLMLACFPELILPTVFLYMFLIGIwnyryrprypphmnikisqaeavhpdeldeefdtfptsrspelVRMRYDRLRSVAGRIQTVVGDVATQGERLQALISWRDPRATAIFITFCLVAALVLFLTPFQVIAALAGFwvmrhprfrrrlpsvpinffrrlpartdsml
Flexible Loop (DISEMBL)
MRNLKLGVQVVGahnllpkdgkgssSAFVELYFDGQRFRTtikendlnpvWNESFYFNISDASKLHYLTLEAYIYNNIGDTNSRSFLGKVCLTGNSFVPLSDSVVLHYPLEKRGIFSHVRGELGLKVyitddpsikssTPLPAAETFSTKDPSITHTHAQPVANPVTGDTVESRHTFHHLPNPNHHQHHHQHHPSTTVVNRHVPKYEADEMKSEPQPPKLVHMYSAASSQSADYALKETSPYLgggkvvggrvihADKTASTYDLVERMYFLYVRVVKARelpamdltgsidpfveVKIGNYKGITKHYEKNQNPQWHQVFAFSRDRMQASVLEVvikdkdlvkdDFVGIVrfdinevplrvppdsplapeWYRLEDKKGEKIKGELMLAVWIGTQADEAFSDAWHSDAATPVDSTPAITAVIRSKVYHSPRLWYVRVNVVEAQDLVPTEKNHFPDVYVKAQIGNQVLKTKICQARTLSAVWNEDLLFVAAEPFEDHLVLTVedrvgpgkdeiigrviiplsaiekRADERIIhsrwfnlekpvavdVDQLkkekfssrihlRVCLDGGYHVLDESTHYSSDLRPTAKQLWRPSIGILELGILNAVGLHPMKtrdgrgtsDTYCVAkyghkwvrtrtlvDNLSPKYNEQYTWEVFDPATVLTVGVFdnsqlgeksngnkdlkigkvRIRISTletgriythsypllVLHPTGVKKMGELHLAIRFSCTSFANMLYLYSRPLLPKMHYVRPFSIMQLDMLRHQAVNIVAArlgraepplrKEVVEYMSDVDSHLWSMRRSKANFFRLMTVFSGLFAVGKWFADICMWKNPITTVLVHVLYLMLACFPELILPTVFLYMFLIGIWNYRYRPRYPPHMNIKISQAEAVHPDELDEEfdtfptsrspelvrMRYDRLRSVAGRiqtvvgdvatqgERLQALISWRDPRATAIFITFCLVAALVLFLTPFQVIAALAGFWVMRHPrfrrrlpsvpinffrrlpartdsml
Low Complexity Region (SEG)
MRNLKLGVQVVGAHNLLPKDGKGSSSAFVELYFDGQRFRTTIKENDLNPVWNESFYFNISDASKLHYLTLEAYIYNNIGDTNSRSFLGKVCLTGNSFVPLSDSVVLHYPLEKRGIFSHVRGELGLKVYITDDPSIKSSTPLPAAETFSTKDPSITHTHAQPVANPVTGDTVESRHTFhhlpnpnhhqhhhqhhpSTTVVNRHVPKYEADEMKSEPQPPKLVHMysaassqsadyaLKETSPYLGGGKVVGGRVIHADKTASTYDLVERMYFLYVRVVKARELPAMDLTGSIDPFVEVKIGNYKGITKHYEKNQNPQWHQVFAFSRDRMQASVLEvvikdkdlvkddfvGIVRFDINEVPLRVPPDSPLAPEWYRLEDKKGEKIKGELMLAVWIGTQADEAFSDAWHSDAATPVDSTPAITAVIRSKVYHSPRLWYVRVNVVEAQDLVPTEKNHFPDVYVKAQIGNQVLKTKICQARTLSAVWNEDLLFVAAEPFEDHLVLTVEDRVGPGKDEIIGRVIIPLSAIEKRADERIIHSRWFNLEKPVAVDVDQLKKEKFSSRIHLRVCLDGGYHVLDESTHYSSDLRPTAKQLWRPSIGILELGILNAVGLHPMKTRDGRGTSDTYCVAKYGHKWVRTRTLVDNLSPKYNEQYTWEVFDPATVLTVGVFDNSQLGEKSNGNKDLKIGKVRIRISTLETGRIYTHSYPLLVLHPTGVKKMGELHLAIRFSCTSFANMLYLYSRPLLPKMHYVRPFSIMQLDMLRHQAVNIVAARLGRAEPPLRKEVVEYMSDVDSHLWSMRRSKANFFRLMTVFSGLFAVGKWFADICMWKNPITTVLVHVLYLMLACFPELILPTVFLYMFLIGIWNYRYRPRYPPHMNIKISQAEAVHPDELDEEFDTFPTSRSPELVRMRYDRLRSVAGRIQTVVGDVATQGERLQALISWRDPRATAIFITFCLVAALVLFLTPFQVIAALAGFWVMRHPRFRRRLPSVPINFFRRLPARTDSML
Disordered region (IsUnstruct)
******GVQVVGAHNLL********SAFVELYFDGQRFRTTIKENDLNPVWNESFYFNISDASKLHYLTLEAYIYNNIGDTNSRSFLGKVCLTGNSFVPLSDSVVLHYPLEKRGIFSHVRGELGLKVYITD***********************************************************************************************************TSPYLGGGKVVGGRVIHADKTASTYDLVERMYFLYVRVVKARELPAMDLTGSIDPFVEVKIGNYKGITKHYEKNQNPQWHQVFAFSRDRMQASVLEVVIKDKDLVKDDFVGIVRFDINEVPLRVPPDSPLAPEWYRLEDKKGEKIKGELMLAVWIGTQADEAFSDAWHSDAATPVDSTPAITAVIRSKVYHSPRLWYVRVNVVEAQDLVPTEKNHFPDVYVKAQIGNQVLKTKICQARTLSAVWNEDLLFVAAEPFEDHLVLTVEDRVGPGKDEIIGRVIIPLSAIEKRADERIIHSRWFNLEKPVAVDVDQLKKEKFSSRIHLRVCLDGGYHVLDESTHYSSDLRPTAKQLWRPSIGILELGILNAVGLHPMKTRDGRGTSDTYCVAKYGHKWVRTRTLVDNLSPKYNEQYTWEVFDPATVLTVGVFDNSQL*******KDLKIGKVRIRISTLETGRIYTHSYPLLVLHPTGVKKMGELHLAIRFSCTSFANMLYLYSRPLLPKMHYVRPFSIMQLDMLRHQAVNIVAARLGRAEPPLRKEVVEYMSDVDSHLWSMRRSKANFFRLMTVFSGLFAVGKWFADICMWKNPITTVLVHVLYLMLACFPELILPTVFLYMFLIGIWNYRYRPRYPPHMNIKI*************************LVRMRYDRLRSVAGRIQTVVGDVATQGERLQALISWRDPRATAIFITFCLVAALVLFLTPFQVIAALAGFWVMRHPRFRRRLPSVPINFFRR*********
Disordered Region (DISOPRED)
*RNLKLGVQVVGAHNLL*****GSSSAFVELYFDGQRFRTTIKENDLNPVWNESFYFNISDASKLHYLTLEAYIYNNIGDTNSRSFLGKVCLTGNSFVPLSDSVVLHYPLEKRGIFSHVRGELGLKVYITDDPSIKSSTPLPAA***********************GDTVESRHTFHH*************************KYEADEMKSEPQPPKLVH***************ETSPYL*********************LVERMYFLYVRVVKARELPAMDLTGSIDPFVEVKIGNYKGITKHYEKNQNPQWHQVFAFSRDRMQASVLEVVIKDKDLVKDDFVGIVRFDINEVPLRVPPDSPLAPEW*************ELMLAVWIGTQADEAFS*******************VIRSKVYHSPRLWYVRVNVVEAQDL******HF**VYVKAQIGNQVLKTKICQARTLSAVWNEDLLFVAAEPFEDHLVLTVEDRVGPGKDEIIGRVIIPLSAIEKRADERIIHSRWFNLEK*************FSSRIHLRVCLDGGYHVLDESTHYSSDLRPTAKQLWRPSIGILELGILNAVGLHPMK*****GTSDTYCVAKYGHKWVRTRTLVDNLSPKYNEQYTWEVFDPATVLTVGVFDNSQLGEKSNGNKDLKIGKVRIRISTLETGRIYTHSYPLLVLHPT***KMGELHLAIRFSCTSFANMLYLYSRPLLPKMHYVRPFSIMQLDMLRHQAVNIVAARLGRAEPPL*KEVVEYMSDVDSHLWSMRRSKANFFRLMTVFSGLFAVGKWFADICMWKNPITTVLVHVLYLMLACFPELILPTVFLYMFLIGIWNYRYRPRYP************************************RYDRLRSVAGRIQTVVGDVATQGERLQALISWRDPRATAIFITFCLVAALVLFLTPFQVIAALAGFWVMRHPRFRRRLPSVPINFFRRLPARTDSML
Disordered Region (DISEMBL)
MRNLKLGVQVVGAHNLLPKDGKGSSSAFVELYFDGQRFRTTIKENDLNPVWNESFYFNISDASKLHYLTLEAYIYNNIGDTNSRSFLGKVCLTGNSFVPLSDSVVLHYPLEKRGIFSHVRGELGLKVYITDDPSIKSSTPLPAAETFSTKDPSITHTHAQPVANPVTGDTVESRHTFHHLPN***************VVNRHVPKYEADEMKSEPQPPKLVHMYSAASSQSADYALKETSPYLGGGKVVGGRVIHADKTASTYDLVERMYFLYVRVVKARELPAMDLTGSIDPFVEVKIGNYKGITKHYEKNQNPQWHQVFAFSRDRMQASVLEVVIKDKDLVKDDFVGIVRFDINEVPLRVPPDSPLAPEWYRLEDKKGEKIKGELMLAVWIGTQADEAFSDAWHSDAATPVDSTPAITAVIRSKVYHSPRLWYVRVNVVEAQDLVPTEKNHFPDVYVKAQIGNQVLKTKICQARTLSAVWNEDLLFVAAEPFEDHLVLTVEDRVGPGKDEIIGRVIIPLSAIEKRADERIIHSRWFNLEKPVAVDVDQLKKEKFSSRIHLRVCLDGGYHVLDESTHYSSDLRPTAKQLWRPSIGILELGILNAVGLHPMKTRDGRGTSDTYCVAKYGHKWVRTRTLVDNLSPKYNEQYTWEVFDPATVLTVGVFDNSQLGEKSNGNKDLKIGKVRIRISTLETGRIYTHSYPLLVLHPTGVKKMGELHLAIRFSCTSFANMLYLYSRPLLPKMHYVRPFSIMQLDMLRHQAVNIVAARLGRAEPPLRKEVVEYMSDVDSHLWSMRRSKANFFRLMTVFSGLFAVGKWFADICMWKNPITTVLVHVLYLMLACFPELILPTVFLYMFLIGIWNYRYRPRYPPHMNIKISQAEAVHPDELDEEFDTFPTSRSPELVRMRYDRLRSVAGRIQTVVGDVATQGERLQALISWRDPRATAIFITFCLVAALVLFLTPFQVIAALAGFWVMRHPRFRRRLPSVPINFFRRLPARTDSML
Disordered Region (DISPRO)
**NLKLGVQVVGAHNLLPKDGKGSSSAFVELYFDGQRFRTTIKENDLNPVWNESFYFNISDASKLHYLTLEAYIYNNIGDTNSRSFLGKVCLTGNSFVPLSDSVVLHYPLEKRGIFSHVRGELGLKVYITDDP******************************************************************************************************************************ASTYDLVERMYFLYVRVVKARELPAMDLTGSIDPFVEVKIGNYKGITKHYEKNQNPQWHQVFAFSRDRMQASVLEVVIKDKDLVKDDFVGIVRFDINEVPLRVPPDSPLAPEWYRLEDKKGEKIKGELMLAVWIGTQADEAFSDAWHSDA************VIRSKVYHSPRLWYVRVNVVEAQDLVPTEKNHFPDVYVKAQIGNQVLKTKICQARTLSAVWNEDLLFVAAEPFEDHLVLTVEDRVGPGKDEIIGRVIIPLSAIEKRADERIIHSRWFNLEKPVAVDVDQLKKEKFSSRIHLRVCLDGGYHVLDESTHYSSDLRPTAKQLWRPSIGILELGILNAVGLHPMKTRDGRGTSDTYCVAKYGHKWVRTRTLVDNLSPKYNEQYTWEVFDPATVLTVGVFDNSQLGEKSNGNKDLKIGKVRIRISTLETGRIYTHSYPLLVLHPTGVKKMGELHLAIRFSCTSFANMLYLYSRPLLPKMHYVRPFSIMQLDMLRHQAVNIVAARLGRAEPPLRKEVVEYMSDVDSHLWSMRRSKANFFRLMTVFSGLFAVGKWFADICMWKNPITTVLVHVLYLMLACFPELILPTVFLYMFLIGIWNYRYRPRYP***************DELD*EFDTFPTSRSPELVRMRYDRLRSVAGRIQTVVGDVATQGERLQALISWRDPRATAIFITFCLVAALVLFLTPFQVIAALAGFWVMRHPRFRRRLPSVPINFFRRLP*******
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MRNLKLGVQVVGAHNLLPKDGKGSSSAFVELYFDGQRFRTTIKENDLNPVWNESFYFNISDASKLHYLTLEAYIYNNIGDTNSRSFLGKVCLTGNSFVPLSDSVVLHYPLEKRGIFSHVRGELGLKVYITDDPSIKSSTPLPAAETFSTKDPSITHTHAQPVANPVTGDTVESRHTFHHLPNPNHHQHHHQHHPSTTVVNRHVPKYEADEMKSEPQPPKLVHMYSAASSQSADYALKETSPYLGGGKVVGGRVIHADKTASTYDLVERMYFLYVRVVKARELPAMDLTGSIDPFVEVKIGNYKGITKHYEKNQNPQWHQVFAFSRDRMQASVLEVVIKDKDLVKDDFVGIVRFDINEVPLRVPPDSPLAPEWYRLEDKKGEKIKGELMLAVWIGTQADEAFSDAWHSDAATPVDSTPAITAVIRSKVYHSPRLWYVRVNVVEAQDLVPTEKNHFPDVYVKAQIGNQVLKTKICQARTLSAVWNEDLLFVAAEPFEDHLVLTVEDRVGPGKDEIIGRVIIPLSAIEKRADERIIHSRWFNLEKPVAVDVDQLKKEKFSSRIHLRVCLDGGYHVLDESTHYSSDLRPTAKQLWRPSIGILELGILNAVGLHPMKTRDGRGTSDTYCVAKYGHKWVRTRTLVDNLSPKYNEQYTWEVFDPATVLTVGVFDNSQLGEKSNGNKDLKIGKVRIRISTLETGRIYTHSYPLLVLHPTGVKKMGELHLAIRFSCTSFANMLYLYSRPLLPKMHYVRPFSIMQLDMLRHQAVNIVAARLGRAEPPLRKEVVEYMSDVDSHLWSMRRSKANFFRLMTVFSGLFAVGKWFADICMWKNPITTVLVHVLYLMLACFPELILPTVFLYMFLIGIWNYRYRPRYPPHMNIKISQAEAVHPDELDEEFDTFPTSRSPELVRMRYDRLRSVAGRIQTVVGDVATQGERLQALISWRDPRATAIFITFCLVAALVLFLTPFQVIAALAGFWVMRHPRFRRRLPSVPINFFRRLPARTDSML
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	1005	2.2.26 [Sep-21-2011]
Q6DN14	999	Multiple C2 and transmemb	no	no	0.438	0.441	0.249	9e-18
Q6DN12	878	Multiple C2 and transmemb	no	no	0.607	0.695	0.216	5e-16
Q5RJH2	878	Multiple C2 and transmemb	no	no	0.608	0.697	0.205	8e-15
Q9ZVT9	1020	C2 and GRAM domain-contai	no	no	0.117	0.115	0.385	5e-14
Q5DTI8	891	Extended synaptotagmin-3	no	no	0.232	0.262	0.264	2e-10
P41885	1106	Rabphilin-1 OS=Caenorhabd	no	no	0.225	0.205	0.241	6e-10
O43581	403	Synaptotagmin-7 OS=Homo s	no	no	0.205	0.513	0.248	1e-09
O43374	803	Ras GTPase-activating pro	no	no	0.222	0.278	0.24	4e-09
C9J798	803	Putative Ras GTPase-activ	no	no	0.222	0.278	0.24	5e-09
Q9R0N7	403	Synaptotagmin-7 OS=Mus mu	no	no	0.205	0.513	0.248	1e-08

>sp|Q6DN14|MCTP1_HUMAN Multiple C2 and transmembrane domain-containing protein 1 OS=Homo sapiens GN=MCTP1 PE=2 SV=2

 Score = 93.2 bits (230), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 133/534 (24%), Positives = 228/534 (42%), Gaps = 93/534 (17%)

Query: 269 MYFLYVRVVKARELPAMDLTGSIDPFVEVKIGNYKGI-TKHYEKNQNPQWHQVFAFSRDR 327
           MY L + + + + L A D  G+ DP+V+ KIG  +   +K   KN NP W +      D 
Sbjct: 260 MYQLDITLRRGQSLAARDRGGTSDPYVKFKIGGKEVFRSKIIHKNLNPVWEEKACILVDH 319

Query: 328 MQASVLEVVIKDKDL-VKDDFVG-----IVRFDINE-----VPLRVP--PDSPLAPEWYR 374
           ++   L + + D D  ++DDF+G     + + ++N      + L+ P  PD  L      
Sbjct: 320 LREP-LYIKVFDYDFGLQDDFMGSAFLDLTQLELNRPTDVTLTLKDPHYPDHDLGIILLS 378

Query: 375 --LEDKKGE-KIKGELMLAVWIGTQADEAFSDA-----------WHSDA--ATPV----- 413
             L  K+GE +    LM   W  +  + + ++            W +    A PV     
Sbjct: 379 VILTPKEGESRDVTMLMRKSWKRSSKELSENEVVGSYFSVKSLFWRTCGRPALPVLGFCR 438

Query: 414 --------DSTPAITAVIR-SKVYHSPRLW--YVRVNVVEAQDLVPTEKNHFPDVYVKAQ 462
                    +    T  +R S ++    LW   V + ++E +DL   + N   D YVK +
Sbjct: 439 AELQNPYCKNVQFQTQSLRLSDLHRKSHLWRGIVSITLIEGRDLKAMDSNGLSDPYVKFR 498

Query: 463 IGNQVLKTKICQARTLSAVWNEDLLFVAAEPFEDHLVLTVEDRVGPGKDEIIGRVIIPLS 522
           +G+Q  K+KI   +TL+  W E   F   E     + +T  D+    +D+ IGR  + LS
Sbjct: 499 LGHQKYKSKI-MPKTLNPQWREQFDFHLYEERGGVIDITAWDKDAGKRDDFIGRCQVDLS 557

Query: 523 AIEKRADERIIHSRWFNLEKPVAVDVDQLKKEKFSSRIHLRVCLDGG--YHVLDESTHYS 580
           A+ +    ++                 +L+ E+    + L V L       + D S +  
Sbjct: 558 ALSREQTHKL-----------------ELQLEEGEGHLVLLVTLTASATVSISDLSVNSL 600

Query: 581 SDLRPTAKQLWRPS----------IGILELGILNAVGLHPMKTRDGRGTSDTYCVAKYGH 630
            D +   + L R S          +G L++ ++ A GL      D  G SD +CV +  +
Sbjct: 601 EDQKEREEILKRYSPLRIFHNLKDVGFLQVKVIRAEGLMAA---DVTGKSDPFCVVELNN 657

Query: 631 KWVRTRTLVDNLSPKYNEQYTWEVFDPATVLTVGVFDNSQLGEKSNGNKDLKIGKVRIRI 690
             + T T+  NL+P++N+ +T+ + D  +VL V V+D     E  + + D  +GKV I +
Sbjct: 658 DRLLTHTVYKNLNPEWNKVFTFNIKDIHSVLEVTVYD-----EDRDRSADF-LGKVAIPL 711

Query: 691 STLETGRIYTHSYPLLVLHPTGVKKMGELHLAIRFSCTSFANMLYLYSRPLLPK 744
            +++ G     +Y L     TG  K G ++L I        N +    R L+PK
Sbjct: 712 LSIQNGE--QKAYVLKNKQLTGPTK-GVIYLEIDV----IFNAVKASLRTLIPK 758

Homo sapiens (taxid: 9606)

>sp|Q6DN12|MCTP2_HUMAN Multiple C2 and transmembrane domain-containing protein 2 OS=Homo sapiens GN=MCTP2 PE=1 SV=3

 Score = 87.4 bits (215), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 157/726 (21%), Positives = 299/726 (41%), Gaps = 115/726 (15%)

Query: 270 YFLYVRVVKARELPAMDLTGSIDPFVEVKIGN---YKGITKHYEKNQNPQWHQVFAFSRD 326
           Y L + + + R L   D  G+ DP+V+ K+     YK  +K   KN NP W ++      
Sbjct: 194 YLLTIHLKEGRNLVVRDRCGTSDPYVKFKLNGKTLYK--SKVIYKNLNPVWDEIVVLPIQ 251

Query: 327 RMQASVLEVVIKDKDLVKDDFVGIVRFDINEVPLRVPPDSPLAPEWYRLEDKKG-EKIKG 385
            +    L V + D+DL   DF+G     ++++ L    +  L     +LED    E   G
Sbjct: 252 SLDQK-LRVKVYDRDLTTSDFMGSAFVILSDLELNRTTEHIL-----KLEDPNSLEDDMG 305

Query: 386 ELMLAVWIGTQADEAFSDAWHSDAATPVDSTPAITAVIRSKVYHSPRLW--YVRVNVVEA 443
            ++L + +  +  +     W +        +  I  +  S+     +LW   + + ++E 
Sbjct: 306 VIVLNLNLVVKQGDFKRHRWSNRKRLSASKSSLIRNLRLSESLKKNQLWNGIISITLLEG 365

Query: 444 QDLVPTEKNHFPDVYVKAQIGNQVLKTK-ICQARTLSAVWNEDLLFVAAEPFEDHL-VLT 501
           +++         +++V+ ++G+Q  K+K +C  ++ +  W E   F     F D + +L 
Sbjct: 366 KNV---SGGSMTEMFVQLKLGDQRYKSKTLC--KSANPQWQEQFDF---HYFSDRMGILD 417

Query: 502 VE--DRVGPGKDEIIGRVIIPLSAIE-KRADERIIHSRWFNLEKPVAVDVDQLKKEKFSS 558
           +E   +     +E +G   + +SA+  K+A+          LE P+   +  L       
Sbjct: 418 IEVWGKDNKKHEERLGTCKVDISALPLKQAN---------CLELPLDSCLGALLM----- 463

Query: 559 RIHLRVCLDGGYHVLDESTHYSSDLRPTAKQLWR----------PSIGILELGILNAVGL 608
            + L  C   G  V D      +DL    +   R            +GIL++ +L A  L
Sbjct: 464 LVTLTPC--AGVSVSDLCVCPLADLSERKQITQRYCLQNSLKDVKDVGILQVKVLKAADL 521

Query: 609 HPMKTRDGRGTSDTYCVAKYGHKWVRTRTLVDNLSPKYNEQYTWEVFDPATVLTVGVFDN 668
                 D  G SD +C+ + G+  ++T T+  NL+P++N+ +T+ + D   VL V VFD 
Sbjct: 522 L---AADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFPIKDIHDVLEVTVFD- 577

Query: 669 SQLGEKSNGNKDLKIGKVRIRISTLETGRIYTHSYPLLVLHPTGVKKMGELHLAIRFSCT 728
               E  +   D  +GKV I + ++  G+   +           V K  +L  A      
Sbjct: 578 ----EDGDKPPDF-LGKVAIPLLSIRDGQPNCY-----------VLKNKDLEQA------ 615

Query: 729 SFANMLYLYSRPLLPKMHYVRPFSIMQLDMLRHQAVNIVAARLGRAEPPLRKEVVEYMSD 788
            F  ++YL                  ++D++     N V A + R   P  K  VE    
Sbjct: 616 -FKGVIYL------------------EMDLI----YNPVKASI-RTFTPREKRFVE---- 647

Query: 789 VDSHLWSMRRSKANFFRLMTVFSGLFAVGKWFADICMWKNPITTVLVHVLYLMLACFPEL 848
            DS   S +    +  R+  +   ++   ++      W++ + + +   ++L+     EL
Sbjct: 648 -DSRKLSKKILSRDVDRVKRITMAIWNTMQFLKSCFQWESTLRSTIAFAVFLITVWNFEL 706

Query: 849 ILPTVFLYMFLIGIWNYRYRPRYPPHMNIKISQAEAVHPDELDEEFDTFPTSRSPELVRM 908
            +  + L + LI ++N+  RP      +I+ SQ      DE DE+          E + M
Sbjct: 707 YM--IPLALLLIFVYNF-IRPVKGKVSSIQDSQESTDIDDEEDEDDKESEKKGLIERIYM 763

Query: 909 RYDRLRSVAGRIQTVVGDVATQGERLQALISWRDPRATAIFITFCLVAALVLFLTPFQVI 968
             D    +   +Q V+ ++A+ GER++   +W  P  +++       A ++L+  P + I
Sbjct: 764 VQD----IVSTVQNVLEEIASFGERIKNTFNWTVPFLSSLACLILAAATIILYFIPLRYI 819

Query: 969 AALAGF 974
             + G 
Sbjct: 820 ILIWGI 825

Homo sapiens (taxid: 9606)

>sp|Q5RJH2|MCTP2_MOUSE Multiple C2 and transmembrane domain-containing protein 2 OS=Mus musculus GN=Mctp2 PE=2 SV=1

 Score = 83.6 bits (205), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 149/725 (20%), Positives = 290/725 (40%), Gaps = 113/725 (15%)

Query: 270 YFLYVRVVKARELPAMDLTGSIDPFVEVKI-GNYKGITKHYEKNQNPQWHQVFAFSRDRM 328
           Y L + + + R L   D  G+ DP+V+ K+ G     +K   KN NP W ++       +
Sbjct: 194 YLLTIHLKEGRNLVVRDRCGTSDPYVKFKLNGKTLYKSKVIYKNLNPIWDEIVVLPIQSL 253

Query: 329 QASVLEVVIKDKDLVKDDFVGIVRFDINEVPLRVPPDSPLAPEWYRLEDKKG-EKIKGEL 387
               L V + D+DL K DF+G     + ++ L    +  L     +LED    E   G +
Sbjct: 254 DQK-LRVKVYDRDLTKSDFMGSAFVVLRDLELNRTTEHIL-----KLEDPNSLEDDMGVI 307

Query: 388 MLAVWIGTQADEAFSDAWHSDAATPVDSTPAITAVIRSKVYHSPRLW--YVRVNVVEAQD 445
           +L + +  +  +     W +        +  I  +  S+     +LW   + + ++E ++
Sbjct: 308 VLNLNLVVKQGDFKRHRWSNRKRLSASKSSLIRNLRLSESLRKNQLWNGIISITLLEGKN 367

Query: 446 LVPTEKNHFPDVYVKAQIGNQVLKTK-ICQARTLSAVWNEDLLFVAAEPFEDHL-VLTVE 503
           +      +  +++V+ ++G Q  K+K +C  ++ +  W E   F     F D + +L +E
Sbjct: 368 V---SGGNMTEMFVQLKLGEQRYKSKTLC--KSANPQWQEQFDF---HYFSDRMGILDIE 419

Query: 504 --DRVGPGKDEIIGRVIIPLSAIEKRADERIIHSRWFNLEKPVAVDVDQLKKEKFSSRIH 561
              +     +E +G   + +SA+  + D          LE P+     +  +      I 
Sbjct: 420 VWGKDSKKHEERLGTCKVDISALPLKQDN--------CLELPL-----ESCQGALLMLIT 466

Query: 562 LRVCLDGGYHVLDESTHYSSDLRPTAKQLWR------------PSIGILELGILNAVGLH 609
           L  C   G  + D       D  P+ +Q                 +GIL++ +L A  L 
Sbjct: 467 LTPC--TGVSISDLCVCPFED--PSERQQISQRYAFQNSLKDVKDVGILQVKVLKASDLL 522

Query: 610 PMKTRDGRGTSDTYCVAKYGHKWVRTRTLVDNLSPKYNEQYTWEVFDPATVLTVGVFDNS 669
                D  G SD +C+ + G+  ++T T+  NL+P++N+ +T+ + D   VL V VFD  
Sbjct: 523 ---AADFSGKSDPFCLLELGNDRLQTHTIYKNLNPEWNKVFTFPIKDIHDVLEVTVFD-- 577

Query: 670 QLGEKSNGNKDLKIGKVRIRISTLETGRIYTHSYPLLVLHPTGVKKMGELHLAIRFSCTS 729
              E  +   D  +GKV I + ++  G+   +           V K  +L  A       
Sbjct: 578 ---EDGDKAPDF-LGKVAIPLLSIRDGQPNCY-----------VLKNKDLEQA------- 615

Query: 730 FANMLYLYSRPLLPKMHYVRPFSIMQLDMLRHQAVNIVAARLGRAEPPLRKEVVEYMSDV 789
           F  ++YL                  +LD++     N V A + R   P  K  VE     
Sbjct: 616 FKGLIYL------------------ELDLI----YNPVKASI-RTFTPREKRFVE----- 647

Query: 790 DSHLWSMRRSKANFFRLMTVFSGLFAVGKWFADICMWKNPITTVLVHVLYLMLACFPELI 849
           DS   S +    +  R+  +   ++   ++F     W++ + + +  V++L+     E  
Sbjct: 648 DSRKLSKKILSRDVDRVKRLTLAIWNTVQFFKSCFQWESTLRSTIAFVVFLVTVWNFE-- 705

Query: 850 LPTVFLYMFLIGIWNYRYRPRYPPHMNIKISQAEAVHPDELDEEFDTFPTSRSPELVRMR 909
                LYM  + +          P      S  ++    +++EE          + +  R
Sbjct: 706 -----LYMIPLALLLLFLYNFLRPMKGKASSTQDSQESTDVEEEGKEEEKESEKKGIIER 760

Query: 910 YDRLRSVAGRIQTVVGDVATQGERLQALISWRDPRATAIFITFCLVAALVLFLTPFQVIA 969
              ++ +   +Q ++ +VA+ GER++ + +W  P  + +      +  ++L+  P + I 
Sbjct: 761 IYMVQDIVSTVQNILEEVASFGERIKNVFNWTVPFLSLLACLILAITTVILYFIPLRYII 820

Query: 970 ALAGF 974
            L G 
Sbjct: 821 LLWGI 825

Mus musculus (taxid: 10090)

>sp|Q9ZVT9|C2GR1_ARATH C2 and GRAM domain-containing protein At1g03370 OS=Arabidopsis thaliana GN=At1g03370 PE=2 SV=4

 Score = 80.9 bits (198), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 47/122 (38%), Positives = 69/122 (56%), Gaps = 4/122 (3%)

Query: 272 LYVRVVKARELPAMDLTGSIDPFVEVKIGNYKGITKHYEKNQNPQWHQVFAFSRDRMQAS 331
           L VRVV+AR LPAMDL G  DP+V +++G  +  TK  +KN NP+W + F+F  D +   
Sbjct: 3   LQVRVVEARNLPAMDLNGFSDPYVRLQLGKQRSRTKVVKKNLNPKWTEDFSFGVDDLNDE 62

Query: 332 VLEVVIKDKDLVKDDFVGIVRFDINEVPLRVPPDSPLAPEWYRLEDKK--GEKIKGELML 389
           ++  V+ +     DDFVG VR  ++ V      +  L   WY L  KK   +K  GE++L
Sbjct: 63  LVVSVLDEDKYFNDDFVGQVRVSVSLV--FDAENQSLGTVWYPLNPKKKGSKKDCGEILL 120

Query: 390 AV 391
            +
Sbjct: 121 KI 122

Arabidopsis thaliana (taxid: 3702)

>sp|Q5DTI8|ESYT3_MOUSE Extended synaptotagmin-3 OS=Mus musculus GN=Esyt3 PE=2 SV=2

 Score = 68.6 bits (166), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 72/272 (26%), Positives = 116/272 (42%), Gaps = 38/272 (13%)

Query: 272 LYVRVVKARELPAMD----LTGSIDPFVEVKIGNYKGITKHYEKNQNPQWHQVFAFSRDR 327
           + V +++A++L   D    L G  DP+ +V IG     ++   KN NP W++VF F    
Sbjct: 312 IRVHLLEAKKLAQKDNFLGLGGKSDPYAKVSIGLQHCRSRTIYKNLNPTWNEVFEFMVYE 371

Query: 328 MQASVLEVVIKDKDLVKDDFVGIVRFDINEVPLRVPPDSPLAPEWYRLEDKKGEKIKGEL 387
           +    LEV + D+D  KDDF+G ++  + +V       + +  EW+ L D       G L
Sbjct: 372 VPGQDLEVDLYDEDTDKDDFLGSLQICLGDV-----MKNRVVDEWFALND----TTSGRL 422

Query: 388 MLAV-WIGTQADEAFSDAWHSDAATPVDS--TPAITAVIRSKVYHSPRLWYVRVN----V 440
            L + W+    D+        +A T  DS  + AI  V      + PR  +  +N     
Sbjct: 423 HLRLEWLSLLTDQ--------EALTENDSGLSTAILVVFLENACNLPRNPFDYLNGEYRA 474

Query: 441 VEAQDLVPTEKNHFPDVYVKAQIGNQVLKTKICQARTLSAVWNEDLLFVAAEPFEDHLVL 500
            +    V  + +  P  YVK  +G +   +K C   +   VW++   F       + L L
Sbjct: 475 KKLSRFVKNKASRDPSSYVKLTVGKKTFTSKTC-PHSKDPVWSQVFSFFVHSVAAEQLCL 533

Query: 501 TVEDRVGPGKDEI---IGRVIIPLSAIEKRAD 529
            V D      DE+   +G +  PL  I   AD
Sbjct: 534 KVLD------DELECALGVLEFPLCRILPCAD 559

May play a role as calcium-regulated intrinsic membrane protein.

Mus musculus (taxid: 10090)

>sp|P41885|RBF1_CAEEL Rabphilin-1 OS=Caenorhabditis elegans GN=rbf-1 PE=1 SV=2

 Score = 67.4 bits (163), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 67/277 (24%), Positives = 119/277 (42%), Gaps = 50/277 (18%)

Query: 272  LYVRVVKARELPAMDLTGSIDPFVEVKI--GNYKGI---TKHYEKNQNPQWHQVFAF--- 323
            L + +++A+ L AMD  G  DP+V+  +  GN K     +K  EK  NP+W++  ++   
Sbjct: 844  LKMHLIRAKNLKAMDSNGFSDPYVKFHLLPGNTKATKLTSKTIEKTLNPEWNEEMSYYGI 903

Query: 324  SRDRMQASVLEVVIKDKDLVKDDFVGIVRFDINEVPLRVPPDSPLAPEWYRLEDKKGEKI 383
            + D  +  +L V + D+D +  DF+G  R  +                  +L D + +K 
Sbjct: 904  TEDDKEKKILRVTVLDRDRIGSDFLGETRIALK-----------------KLNDNEMKKF 946

Query: 384  KGELMLAVWIGTQADEAFSDAWHSDAATPVDSTPAITAVIRSKVYHSPRLWYVRVNVVEA 443
               L  A+ +  Q  E  ++                   I   + ++ +   + +N+   
Sbjct: 947  NLYLESALPVPQQTKEEENED---------------RGKINVGLQYNIQQGSLFININRC 991

Query: 444  QDLVPTEKNHFPDVYVKAQ---IGNQVLKTKIC-QARTLSAVWNEDLLFVAAEPFED--- 496
             +LV  +   F D Y K     I ++  + K   + RTL+  WNE L FV   PF+D   
Sbjct: 992  VELVGMDSTGFSDPYCKVSLTPITSKAHRAKTSTKKRTLNPEWNEQLQFVV--PFKDLPK 1049

Query: 497  -HLVLTVEDRVGPGKDEIIGRVIIPLSAIEKRADERI 532
              L + V D      D+ IG +++  SA ++R  + I
Sbjct: 1050 KTLQIGVYDHDLGKHDDYIGGILLSTSAKDERGRQWI 1086

Rab-3 effector.

Caenorhabditis elegans (taxid: 6239)

>sp|O43581|SYT7_HUMAN Synaptotagmin-7 OS=Homo sapiens GN=SYT7 PE=1 SV=3

 Score = 66.2 bits (160), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 65/262 (24%), Positives = 122/262 (46%), Gaps = 55/262 (20%)

Query: 272 LYVRVVKARELPAMDLTGSIDPFVEVKI---GNYKGITKHYEKNQNPQWHQVF---AFSR 325
           L V+++KA+ELPA D +G+ DPFV++ +     +K  TK   KN NP W++ F    F  
Sbjct: 152 LTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPY 211

Query: 326 DRMQASVLEVVIKDKD-LVKDDFVGIVRFDINEVPLRVPPDSPLAPEWYRLED-KKGEKI 383
           +++   +L + + D D   ++D +G V   +N+V L     + +   W  L+    G   
Sbjct: 212 EKVVQRILYLQVLDYDRFSRNDPIGEVSIPLNKVDL-----TQMQTFWKDLKPCSDGSGS 266

Query: 384 KGELMLAVWIGTQADEAFSDAWHSDAATPVDSTPAITAVIRSKVYHSPRLWYVRVNVVEA 443
           +GEL+L++                         P+  ++I              VN+++A
Sbjct: 267 RGELLLSLCY----------------------NPSANSII--------------VNIIKA 290

Query: 444 QDLVPTEKNHFPDVYVKAQI---GNQVLKTK-ICQARTLSAVWNEDLLF-VAAEPF-EDH 497
           ++L   +     D YVK  +     +V K K +   R L+ ++NE   F +  E   E  
Sbjct: 291 RNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTMKRNLNPIFNESFAFDIPTEKLRETT 350

Query: 498 LVLTVEDRVGPGKDEIIGRVII 519
           +++TV D+    ++++IG++ +
Sbjct: 351 IIITVMDKDKLSRNDVIGKIYL 372

May be involved in Ca(2+)-dependent exocytosis of secretory vesicles through Ca(2+) and phospholipid binding to the C2 domain or may serve as Ca(2+) sensors in the process of vesicular trafficking and exocytosis.

Homo sapiens (taxid: 9606)

>sp|O43374|RASL2_HUMAN Ras GTPase-activating protein 4 OS=Homo sapiens GN=RASA4 PE=2 SV=2

 Score = 64.3 bits (155), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 66/275 (24%), Positives = 114/275 (41%), Gaps = 51/275 (18%)

Query: 272 LYVRVVKARELPAMDLTGSIDPFVEVKIGNYKGI-TKHYEKNQNPQWHQVFAFSRDRMQA 330
           LY+R+V+ + LPA D+TGS DP+  VK+ N   I T    K   P W + +         
Sbjct: 7   LYIRIVEGKNLPAKDITGSSDPYCIVKVDNEPIIRTATVWKTLCPFWGEEYQVHLPPTFH 66

Query: 331 SVLEVVIKDKDLVKDDFVGIVRFDINEVPLRVPPDSPLAPEWYRLEDKKGEKIKGE--LM 388
           +V   V+ +  L +DD +G V    + +       S  A   +  E    E+++GE  L 
Sbjct: 67  AVAFYVMDEDALSRDDVIGKVCLTRDTIASHPKGFSGWA---HLTEVDPDEEVQGEIHLR 123

Query: 389 LAVWIGTQADEAFSDAWHSDAATPVDSTPAITAVIRSKVYHSPRLWYVRVNVVEAQDLVP 448
           L VW G +A                                      +R +V+EA+DL P
Sbjct: 124 LEVWPGARA------------------------------------CRLRCSVLEARDLAP 147

Query: 449 TEKNHFPDVYVKAQIGNQVLKTKICQARTLSAVWNEDLLFVAAEPFEDHLVLTVEDRVGP 508
            ++N   D +V+ +   +  +T I + ++    WNE   F   E   + L +   D    
Sbjct: 148 KDRNGTSDPFVRVRYKGRTRETSIVK-KSCYPRWNETFEFELQEGAMEALCVEAWDWDLV 206

Query: 509 GKDEIIGRVIIPLSAIEKRADERIIHSR--WFNLE 541
            +++ +G+V+I +  +      R++     WF L+
Sbjct: 207 SRNDFLGKVVIDVQRL------RVVQQEEGWFRLQ 235

Ca(2+)-dependent Ras GTPase-activating protein, that switches off the Ras-MAPK pathway following a stimulus that elevates intracellular calcium. Functions as an adaptor for Cdc42 and Rac1 during FcR-mediated phagocytosis.

Homo sapiens (taxid: 9606)

>sp|C9J798|RAS4B_HUMAN Putative Ras GTPase-activating protein 4B OS=Homo sapiens GN=RASA4B PE=5 SV=2

 Score = 64.3 bits (155), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 66/275 (24%), Positives = 114/275 (41%), Gaps = 51/275 (18%)

Query: 272 LYVRVVKARELPAMDLTGSIDPFVEVKIGNYKGI-TKHYEKNQNPQWHQVFAFSRDRMQA 330
           LY+R+V+ + LPA D+TGS DP+  VK+ N   I T    K   P W + +         
Sbjct: 7   LYIRIVEGKNLPAKDITGSSDPYCIVKVDNEPIIRTATVWKTLCPFWGEEYQVHLPPTFH 66

Query: 331 SVLEVVIKDKDLVKDDFVGIVRFDINEVPLRVPPDSPLAPEWYRLEDKKGEKIKGE--LM 388
           +V   V+ +  L +DD +G V    + +       S  A   +  E    E+++GE  L 
Sbjct: 67  AVAFYVMDEDALSRDDVIGKVCLTRDTIASHPKGFSGWA---HLTEVDPDEEVQGEIHLR 123

Query: 389 LAVWIGTQADEAFSDAWHSDAATPVDSTPAITAVIRSKVYHSPRLWYVRVNVVEAQDLVP 448
           L VW G +A                                      +R +V+EA+DL P
Sbjct: 124 LEVWPGARA------------------------------------CRLRCSVLEARDLAP 147

Query: 449 TEKNHFPDVYVKAQIGNQVLKTKICQARTLSAVWNEDLLFVAAEPFEDHLVLTVEDRVGP 508
            ++N   D +V+ +   +  +T I + ++    WNE   F   E   + L +   D    
Sbjct: 148 KDRNGTSDPFVRVRYKGRTRETSIVK-KSCYPRWNETFEFELQEGAMEALCVEAWDWDLV 206

Query: 509 GKDEIIGRVIIPLSAIEKRADERIIHSR--WFNLE 541
            +++ +G+V+I +  +      R++     WF L+
Sbjct: 207 SRNDFLGKVVIDVQRL------RVVQQEEGWFRLQ 235

Ca(2+)-dependent Ras GTPase-activating protein, that may play a role in the Ras-MAPK pathway.

Homo sapiens (taxid: 9606)

>sp|Q9R0N7|SYT7_MOUSE Synaptotagmin-7 OS=Mus musculus GN=Syt7 PE=1 SV=1

 Score = 63.2 bits (152), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 65/262 (24%), Positives = 120/262 (45%), Gaps = 55/262 (20%)

Query: 272 LYVRVVKARELPAMDLTGSIDPFVEVKI---GNYKGITKHYEKNQNPQWHQVF---AFSR 325
           L V+V+KA+ELPA D +G+ DPFV++ +     +K  TK   KN NP W++ F    F  
Sbjct: 152 LTVKVMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPY 211

Query: 326 DRMQASVLEVVIKDKD-LVKDDFVGIVRFDINEVPLRVPPDSPLAPEWYRLED-KKGEKI 383
           +++   VL + + D D   ++D +G V   +N+V L     + +   W  L+    G   
Sbjct: 212 EKVVQRVLYLQVLDYDRFSRNDPIGEVSIPLNKVDL-----TQMQTFWKDLKPCSDGSGS 266

Query: 384 KGELMLAVWIGTQADEAFSDAWHSDAATPVDSTPAITAVIRSKVYHSPRLWYVRVNVVEA 443
           +GEL+L++                         P+  ++I              VN+++A
Sbjct: 267 RGELLLSLCY----------------------NPSANSII--------------VNIIKA 290

Query: 444 QDLVPTEKNHFPDVYVKAQI----GNQVLKTKICQARTLSAVWNEDLLF-VAAEPF-EDH 497
           ++L   +     D YVK  +         K  + + R L+ ++NE   F +  E   E  
Sbjct: 291 RNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTKKRNLNPIFNESFAFDIPTEKLRETT 350

Query: 498 LVLTVEDRVGPGKDEIIGRVII 519
           +++TV D+    ++++IG++ +
Sbjct: 351 IIITVMDKDKLSRNDVIGKIYL 372

May be involved in Ca(2+)-dependent exocytosis of secretory vesicles through Ca(2+) and phospholipid binding to the C2 domain or may serve as Ca(2+) sensors in the process of vesicular trafficking and exocytosis.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	1005
359474216	988	PREDICTED: uncharacterized protein LOC10	0.982	0.998	0.830	0.0
224071844	1009	predicted protein [Populus trichocarpa]	0.999	0.995	0.857	0.0
356539728	1006	PREDICTED: uncharacterized protein LOC10	0.996	0.995	0.832	0.0
357481633	1007	Glutathione peroxidase [Medicago truncat	1.0	0.998	0.834	0.0
255537443	980	synaptotagmin, putative [Ricinus communi	0.972	0.996	0.838	0.0
42566473	1011	C2 calcium/lipid-binding and phosphoribo	0.989	0.983	0.767	0.0
255541548	1017	synaptotagmin, putative [Ricinus communi	0.996	0.984	0.754	0.0
297813641	1009	NADPH-dependent thioredoxin reductase B	0.987	0.983	0.763	0.0
356495672	959	PREDICTED: uncharacterized protein LOC10	0.949	0.994	0.820	0.0
225454164	1018	PREDICTED: multiple C2 and transmembrane	0.994	0.981	0.732	0.0

>gi|359474216|ref|XP_002272722.2| PREDICTED: uncharacterized protein LOC100264973 [Vitis vinifera]

 Score = 1764 bits (4568), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 835/1006 (83%), Positives = 915/1006 (90%), Gaps = 19/1006 (1%)

Query: 1    MRNLKLGVQVVGAHNLLPKDGKGSSSAFVELYFDGQRFRTTIKENDLNPVWNESFYFNIS 60
            M NLKLGV VV AHNL+PKDG+GSSSAFVELYFDGQ+FRTTIKE DLNPVWNESFYFNIS
Sbjct: 1    MNNLKLGVDVVSAHNLMPKDGQGSSSAFVELYFDGQKFRTTIKEKDLNPVWNESFYFNIS 60

Query: 61   DASKLHYLTLEAYIYNNIGDTNSRSFLGKVCLTGNSFVPLSDSVVLHYPLEKRGIFSHVR 120
            D S LHYLTL+ YIYNN   TNSRSFLGKV LTG SFVP SD+VVLHYP+EKRGIFS VR
Sbjct: 61   DPSNLHYLTLDVYIYNNTKATNSRSFLGKVSLTGTSFVPYSDAVVLHYPVEKRGIFSRVR 120

Query: 121  GELGLKVYITDDPSIKSSTPLPAAETFSTKDPSITHTHAQPVANPVTGDTVESRHTFHHL 180
            GELGLKVYITDDPSIKSS P+P+ E+ + KD S+TH    P   P   +  E+RHTFHHL
Sbjct: 121  GELGLKVYITDDPSIKSSIPVPSVES-THKDASLTHDQTVPNPVPTGSEKAEARHTFHHL 179

Query: 181  PNPNHHQHHHQHHPSTTVVNRHVPKYEADEMKSEPQPPKLVHMYSAASSQSADYALKETS 240
            PNPNH QH HQ  P   V      KY  DEMKSEPQPPKLV MYS++ +Q  D+ALKETS
Sbjct: 180  PNPNHPQHQHQSFP---VAVHQATKYGVDEMKSEPQPPKLVRMYSSSPAQPVDFALKETS 236

Query: 241  PYLGGGKVVGGRVIHADKTASTYDLVERMYFLYVRVVKARELPAMDLTGSIDPFVEVKIG 300
            P+LGGG+VV GRVI +DKTASTYDLVE+M FL+VRVVKARELPAMD+TGS+DP+VEVKIG
Sbjct: 237  PFLGGGQVVRGRVIRSDKTASTYDLVEQMQFLFVRVVKARELPAMDVTGSLDPYVEVKIG 296

Query: 301  NYKGITKHYEKNQNPQWHQVFAFSRDRMQASVLEVVIKDKDLVKDDFVGIVRFDINEVPL 360
            NYKG+TKH EK QNP+W+ VFAFSRDRMQASVLEVV+KDKDLVKDDFVG           
Sbjct: 297  NYKGVTKHMEKKQNPEWNVVFAFSRDRMQASVLEVVVKDKDLVKDDFVGRA--------- 347

Query: 361  RVPPDSPLAPEWYRLEDKKGEKIKGELMLAVWIGTQADEAFSDAWHSDAATPVDSTPAIT 420
                 SPLAPEWYRLEDKKGEKIKGELMLAVWIGTQADEAF DAWHSD+ATPVDS+ A +
Sbjct: 348  -----SPLAPEWYRLEDKKGEKIKGELMLAVWIGTQADEAFPDAWHSDSATPVDSSAAAS 402

Query: 421  AVIRSKVYHSPRLWYVRVNVVEAQDLVPTEKNHFPDVYVKAQIGNQVLKTKICQARTLSA 480
             +IRSKVYH+PRLWYVRVN++EAQDLVPTEKN FPDVYVK  IGNQV+KTK  QAR+L+ 
Sbjct: 403  TLIRSKVYHAPRLWYVRVNIIEAQDLVPTEKNRFPDVYVKVHIGNQVMKTKTVQARSLTT 462

Query: 481  VWNEDLLFVAAEPFEDHLVLTVEDRVGPGKDEIIGRVIIPLSAIEKRADERIIHSRWFNL 540
            +WNEDLLFVAAEPFEDHL+L+VEDRVGPGKDEI+GRVIIPLS +++RAD+R+IHSRW+NL
Sbjct: 463  LWNEDLLFVAAEPFEDHLILSVEDRVGPGKDEILGRVIIPLSTVDRRADDRMIHSRWYNL 522

Query: 541  EKPVAVDVDQLKKEKFSSRIHLRVCLDGGYHVLDESTHYSSDLRPTAKQLWRPSIGILEL 600
            EKP+AVDVDQLKKEKFSSR+HL+VCLDGGYHVLDESTHYSSDLRPTAKQLW+PSIG+LEL
Sbjct: 523  EKPIAVDVDQLKKEKFSSRLHLQVCLDGGYHVLDESTHYSSDLRPTAKQLWKPSIGVLEL 582

Query: 601  GILNAVGLHPMKTRDGRGTSDTYCVAKYGHKWVRTRTLVDNLSPKYNEQYTWEVFDPATV 660
            GILNAVGLHPMKTRDG+GTSDTYCVAKYGHKW+RTRT+VDNL P+YNEQYTWEVFDPATV
Sbjct: 583  GILNAVGLHPMKTRDGKGTSDTYCVAKYGHKWIRTRTIVDNLCPRYNEQYTWEVFDPATV 642

Query: 661  LTVGVFDNSQLGEK-SNGNKDLKIGKVRIRISTLETGRIYTHSYPLLVLHPTGVKKMGEL 719
            LTVGVFDNSQLGEK SNGNKDLKIGKVRIRISTLETGR+YTHSYPLLVLHP+GVKKMGEL
Sbjct: 643  LTVGVFDNSQLGEKGSNGNKDLKIGKVRIRISTLETGRVYTHSYPLLVLHPSGVKKMGEL 702

Query: 720  HLAIRFSCTSFANMLYLYSRPLLPKMHYVRPFSIMQLDMLRHQAVNIVAARLGRAEPPLR 779
            H+AIRFSCTSF NMLY+YSRPLLPKMHYVRPFS+MQLDMLRHQAVNIVAARLGRAEPPLR
Sbjct: 703  HMAIRFSCTSFVNMLYIYSRPLLPKMHYVRPFSVMQLDMLRHQAVNIVAARLGRAEPPLR 762

Query: 780  KEVVEYMSDVDSHLWSMRRSKANFFRLMTVFSGLFAVGKWFADICMWKNPITTVLVHVLY 839
            KEVVEYMSDVDSHLWSMRRSKANFFRLM++FSGLFAVGKWF DICMW+NPITTVLVHVL+
Sbjct: 763  KEVVEYMSDVDSHLWSMRRSKANFFRLMSIFSGLFAVGKWFGDICMWRNPITTVLVHVLF 822

Query: 840  LMLACFPELILPTVFLYMFLIGIWNYRYRPRYPPHMNIKISQAEAVHPDELDEEFDTFPT 899
            LML CFPELILPTVFLYMFLIG+WN+RYRPRYPPHMN +ISQA+AVHPDELDEEFDTFPT
Sbjct: 823  LMLVCFPELILPTVFLYMFLIGVWNFRYRPRYPPHMNTRISQADAVHPDELDEEFDTFPT 882

Query: 900  SRSPELVRMRYDRLRSVAGRIQTVVGDVATQGERLQALISWRDPRATAIFITFCLVAALV 959
            SRSPELVR+RYDRLRSVAGRIQTVVGDVATQGER+Q+L+SWRDPRATAIF+TFCLVAALV
Sbjct: 883  SRSPELVRLRYDRLRSVAGRIQTVVGDVATQGERVQSLLSWRDPRATAIFVTFCLVAALV 942

Query: 960  LFLTPFQVIAALAGFWVMRHPRFRRRLPSVPINFFRRLPARTDSML 1005
            L++TPFQVIAALAGF++MRHPRFR RLPS PINFFRRLPARTDSML
Sbjct: 943  LYVTPFQVIAALAGFYMMRHPRFRYRLPSAPINFFRRLPARTDSML 988

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224071844|ref|XP_002303582.1| predicted protein [Populus trichocarpa] gi|222841014|gb|EEE78561.1| predicted protein [Populus trichocarpa]

 Score = 1753 bits (4540), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 865/1009 (85%), Positives = 923/1009 (91%), Gaps = 5/1009 (0%)

Query: 1    MRNLKLGVQVVGAHNLLPKDGKGSSSAFVELYFDGQRFRTTIKENDLNPVWNESFYFNIS 60
            M NLKLGV+VV AHNLLPKD  GSSSAFVEL FDGQRFRTTIKE D NPVW+E FYFNI 
Sbjct: 2    MSNLKLGVEVVSAHNLLPKDEHGSSSAFVELCFDGQRFRTTIKEKDPNPVWSECFYFNIP 61

Query: 61   DASKLHYLTLEAYIYNNIGDTNSRSFLGKVCLTGNSFVPLSDSVVLHYPLEKRGIFSHVR 120
            D S LHYLTL+A++YNNI  TNSR FLGKVCLTGNSFVP SD+VVLHYPLEKRGIFS VR
Sbjct: 62   DPSNLHYLTLDAHVYNNIRATNSRYFLGKVCLTGNSFVPYSDAVVLHYPLEKRGIFSRVR 121

Query: 121  GELGLKVYITDDPSIKSSTPLPAAETFSTKDPSITHTHA---QPVANPVTGDTVESRHTF 177
            GELGLKVYITDD SIKSSTPLPA E+  TKDP +TH  A    P+ N V+   VE RHTF
Sbjct: 122  GELGLKVYITDDASIKSSTPLPAVESLPTKDPGLTHAVAPMVDPMTNTVSHKRVE-RHTF 180

Query: 178  HHLPNPNHHQHHHQHHPSTTVVNRHVPKYEADEMKS-EPQPPKLVHMYSAASSQSADYAL 236
            HHLPNPNH Q  HQ+H S   +  HVPKY ADEMK+ E QPPKLV M+SA+SSQ  D+AL
Sbjct: 181  HHLPNPNHQQQQHQNHSSAPSITHHVPKYVADEMKAAETQPPKLVRMHSASSSQPVDHAL 240

Query: 237  KETSPYLGGGKVVGGRVIHADKTASTYDLVERMYFLYVRVVKARELPAMDLTGSIDPFVE 296
            KETSP+LGGG+VVGGRVI  DKTASTYDLVERMYFLYVRVVKAR+LPAMD+TGS+DPFVE
Sbjct: 241  KETSPFLGGGRVVGGRVIRGDKTASTYDLVERMYFLYVRVVKARDLPAMDVTGSLDPFVE 300

Query: 297  VKIGNYKGITKHYEKNQNPQWHQVFAFSRDRMQASVLEVVIKDKDLVKDDFVGIVRFDIN 356
            V++GNY+GITKH+EK QNP+W+QVFAFSR+RMQASVLEVVIKDKDLVKDDFVG++RFDIN
Sbjct: 301  VRVGNYRGITKHFEKKQNPEWNQVFAFSRERMQASVLEVVIKDKDLVKDDFVGVIRFDIN 360

Query: 357  EVPLRVPPDSPLAPEWYRLEDKKGEKIKGELMLAVWIGTQADEAFSDAWHSDAATPVDST 416
            EVP RVPPDSPLAPEWYRLEDKKGEKIKGELMLAVWIGTQADE F DAWHSDAATPVD+T
Sbjct: 361  EVPSRVPPDSPLAPEWYRLEDKKGEKIKGELMLAVWIGTQADETFPDAWHSDAATPVDNT 420

Query: 417  PAITAVIRSKVYHSPRLWYVRVNVVEAQDLVPTEKNHFPDVYVKAQIGNQVLKTKICQAR 476
            PA + V RSKVYH+PRLWYVRVNVVEAQDLVP+EK  FP+VY K Q+GNQVLKTK CQAR
Sbjct: 421  PATSTVTRSKVYHAPRLWYVRVNVVEAQDLVPSEKTRFPEVYAKVQMGNQVLKTKTCQAR 480

Query: 477  TLSAVWNEDLLFVAAEPFEDHLVLTVEDRVGPGKDEIIGRVIIPLSAIEKRADERIIHSR 536
            T SA+WNEDLLFVAAEPFEDHLVL+VEDRVGPGKDEIIGRVIIPL ++EKRAD+RIIHSR
Sbjct: 481  TFSALWNEDLLFVAAEPFEDHLVLSVEDRVGPGKDEIIGRVIIPLRSVEKRADDRIIHSR 540

Query: 537  WFNLEKPVAVDVDQLKKEKFSSRIHLRVCLDGGYHVLDESTHYSSDLRPTAKQLWRPSIG 596
            WFNLEKPVAVDVDQ KK+KFSSRIHLR CLDGGYHVLDESTHYSSDL PTAKQLWRP IG
Sbjct: 541  WFNLEKPVAVDVDQFKKDKFSSRIHLRACLDGGYHVLDESTHYSSDLCPTAKQLWRPPIG 600

Query: 597  ILELGILNAVGLHPMKTRDGRGTSDTYCVAKYGHKWVRTRTLVDNLSPKYNEQYTWEVFD 656
            ILELGILNAVGLHP+KTRDGRGT+DTYCVAKYGHKWVRTRTL+DN SPKYNEQYTWEVFD
Sbjct: 601  ILELGILNAVGLHPLKTRDGRGTADTYCVAKYGHKWVRTRTLIDNPSPKYNEQYTWEVFD 660

Query: 657  PATVLTVGVFDNSQLGEKSNGNKDLKIGKVRIRISTLETGRIYTHSYPLLVLHPTGVKKM 716
            PATVLTVGVFDNSQLG K +  KDLKIGKVRIRISTLETGR+YTHSYPLLVLHPTGVKKM
Sbjct: 661  PATVLTVGVFDNSQLGGKGSNGKDLKIGKVRIRISTLETGRVYTHSYPLLVLHPTGVKKM 720

Query: 717  GELHLAIRFSCTSFANMLYLYSRPLLPKMHYVRPFSIMQLDMLRHQAVNIVAARLGRAEP 776
            GELHLAIRF+C SFANMLY YSRPLLPKMHY+RPF++MQLDMLRHQAVNIVA RLGRAEP
Sbjct: 721  GELHLAIRFTCISFANMLYQYSRPLLPKMHYIRPFNVMQLDMLRHQAVNIVALRLGRAEP 780

Query: 777  PLRKEVVEYMSDVDSHLWSMRRSKANFFRLMTVFSGLFAVGKWFADICMWKNPITTVLVH 836
            PLRKEVVEYMSDVDSHLWSMRRSKANF RLMTVFSGLF  GKWF DICMWKNPITTVLVH
Sbjct: 781  PLRKEVVEYMSDVDSHLWSMRRSKANFLRLMTVFSGLFTAGKWFEDICMWKNPITTVLVH 840

Query: 837  VLYLMLACFPELILPTVFLYMFLIGIWNYRYRPRYPPHMNIKISQAEAVHPDELDEEFDT 896
            VLYLMLACFPELILPTVFLYMFLIGIWNYRYRPRYPPHMN KISQAEAVHPDELDEEFDT
Sbjct: 841  VLYLMLACFPELILPTVFLYMFLIGIWNYRYRPRYPPHMNTKISQAEAVHPDELDEEFDT 900

Query: 897  FPTSRSPELVRMRYDRLRSVAGRIQTVVGDVATQGERLQALISWRDPRATAIFITFCLVA 956
            FPTSRSPELV MRYDRLRSVAGRIQTV+GD+ATQGER QAL+SWRDPRATAIF+ FCLVA
Sbjct: 901  FPTSRSPELVGMRYDRLRSVAGRIQTVIGDIATQGERFQALLSWRDPRATAIFVIFCLVA 960

Query: 957  ALVLFLTPFQVIAALAGFWVMRHPRFRRRLPSVPINFFRRLPARTDSML 1005
            ALVLF+TPFQVIAALAGF++MRHPRFR R PSVPINFFRRLPARTDSML
Sbjct: 961  ALVLFVTPFQVIAALAGFYMMRHPRFRYRTPSVPINFFRRLPARTDSML 1009

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356539728|ref|XP_003538346.1| PREDICTED: uncharacterized protein LOC100777951 [Glycine max]

 Score = 1750 bits (4532), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 841/1010 (83%), Positives = 922/1010 (91%), Gaps = 9/1010 (0%)

Query: 1    MRNLKLGVQVVGAHNLLPKDGKGSSSAFVELYFDGQRFRTTIKENDLNPVWNESFYFNIS 60
            M N KLGV VV AHNLLPKDG+GSS+AFVELYFDGQ++RTTIKE DLNPVWNESFYFNIS
Sbjct: 1    MNNFKLGVDVVSAHNLLPKDGQGSSNAFVELYFDGQKYRTTIKERDLNPVWNESFYFNIS 60

Query: 61   DASKLHYLTLEAYIYNNIGDTNSRSFLGKVCLTGNSFVPLSDSVVLHYPLEKRGIFSHVR 120
            D S LHY+ L+ YI+ +   TNS SFLGKV LTG SFVP SD+VVLHYPLEKRGIFS VR
Sbjct: 61   DPSNLHYMALDVYIHCHTKATNSTSFLGKVSLTGTSFVPYSDAVVLHYPLEKRGIFSRVR 120

Query: 121  GELGLKVYITDDPSIKSSTPLPAAETFSTKDPSITHTH----AQPVANPVTGDTVESRHT 176
            GE+GLKVYIT+DP+IKSS P P  E+  T   S TH+     A  + N +  + VESRHT
Sbjct: 121  GEIGLKVYITNDPTIKSSIPTPVVESMPTNYSSSTHSEVRAPASTMTNSLPNEKVESRHT 180

Query: 177  FHHLPNPNHHQHHHQHHPSTTVVNRHVPKYEADEMKSEPQPPKLVHMYSAASSQSADYAL 236
            FHHLPN NHHQH  Q H S      +V KYEAD MKSEPQP KLV   +A S Q  D+AL
Sbjct: 181  FHHLPNTNHHQH--QQHSSGFADTHYVTKYEADAMKSEPQPMKLVR--TATSVQPVDFAL 236

Query: 237  KETSPYLGGGKVVGGRVIHADKTASTYDLVERMYFLYVRVVKARELPAMDLTGSIDPFVE 296
            KETSPYLGGG+VVGGR++H DKTASTYDLVERMYFLYVRVVKARELPAMD+TGS+DPFVE
Sbjct: 237  KETSPYLGGGRVVGGRIVHKDKTASTYDLVERMYFLYVRVVKARELPAMDVTGSLDPFVE 296

Query: 297  VKIGNYKGITKHYEKNQNPQWHQVFAFSRDRMQASVLEVVIKDKDLVKDDFVGIVRFDIN 356
            V+IGNYKGIT+H++KNQ+P+W+QVFAFS+DRMQASVL+VVIKDKDL+KDDFVGIVRFDIN
Sbjct: 297  VRIGNYKGITRHFDKNQSPEWNQVFAFSKDRMQASVLDVVIKDKDLIKDDFVGIVRFDIN 356

Query: 357  EVPLRVPPDSPLAPEWYRLEDKKGEKIKGELMLAVWIGTQADEAFSDAWHSDAATPVDST 416
            EVPLRVPPDSPLAPEWYRLEDKKGEK KGELMLAVWIGTQADEAFSDAWHSDAATPVDST
Sbjct: 357  EVPLRVPPDSPLAPEWYRLEDKKGEKNKGELMLAVWIGTQADEAFSDAWHSDAATPVDST 416

Query: 417  PAITAVIRSKVYHSPRLWYVRVNVVEAQDLVPTEKNHFPDVYVKAQIGNQVLKTKICQAR 476
             AI+AV+RSKVYH+PRLWYVRVNVVEAQDLVPTEKN FPDVY K QIGNQVLKTK   AR
Sbjct: 417  HAISAVMRSKVYHAPRLWYVRVNVVEAQDLVPTEKNRFPDVYAKVQIGNQVLKTKTVPAR 476

Query: 477  TLSAVWNEDLLFVAAEPFEDHLVLTVEDRVGPGKDEIIGRVIIPLSAIEKRADERIIHSR 536
            TLSA+WNEDLLFVAAEPFEDHL+++VEDRV PGKDEIIGR+IIPL+++E+RAD+RIIHSR
Sbjct: 477  TLSALWNEDLLFVAAEPFEDHLIISVEDRVSPGKDEIIGRIIIPLNSVERRADDRIIHSR 536

Query: 537  WFNLEKPVAVDVDQLKKEKFSSRIHLRVCLDGGYHVLDESTHYSSDLRPTAKQLWRPSIG 596
            WFNLEKPVA+DVDQLKKEKFSSRI LR+CLDGGYHVLDESTHYSSDLRPTAKQLW+P IG
Sbjct: 537  WFNLEKPVAIDVDQLKKEKFSSRIQLRLCLDGGYHVLDESTHYSSDLRPTAKQLWKPPIG 596

Query: 597  ILELGILNAVGLHPMKTRDGRGTSDTYCVAKYGHKWVRTRTLVDNLSPKYNEQYTWEVFD 656
            +LELG+LNAVGLHPMKTRDGRGTSDTYCVAKYGHKWVRTRT+ DNL PKYNEQYTWEVFD
Sbjct: 597  VLELGVLNAVGLHPMKTRDGRGTSDTYCVAKYGHKWVRTRTIADNLCPKYNEQYTWEVFD 656

Query: 657  PATVLTVGVFDNSQLGEKSNG-NKDLKIGKVRIRISTLETGRIYTHSYPLLVLHPTGVKK 715
             ATVLTVGVFDNSQLGEK+NG +KDLKIGKVRIRISTLETGRIYTHSYPLLVLHPTGVKK
Sbjct: 657  HATVLTVGVFDNSQLGEKANGSSKDLKIGKVRIRISTLETGRIYTHSYPLLVLHPTGVKK 716

Query: 716  MGELHLAIRFSCTSFANMLYLYSRPLLPKMHYVRPFSIMQLDMLRHQAVNIVAARLGRAE 775
            MGELHLAIRFSCTSFANMLYLYSRPLLPKMHYVRPFS+ QLDMLRHQA+NIVAARLGRAE
Sbjct: 717  MGELHLAIRFSCTSFANMLYLYSRPLLPKMHYVRPFSVTQLDMLRHQAMNIVAARLGRAE 776

Query: 776  PPLRKEVVEYMSDVDSHLWSMRRSKANFFRLMTVFSGLFAVGKWFADICMWKNPITTVLV 835
            PPLRKEVVEYMSDVDSHLWSMRRSKANFFRLMTVFSG+FAVGKWF DICMW+NPITTVLV
Sbjct: 777  PPLRKEVVEYMSDVDSHLWSMRRSKANFFRLMTVFSGVFAVGKWFGDICMWRNPITTVLV 836

Query: 836  HVLYLMLACFPELILPTVFLYMFLIGIWNYRYRPRYPPHMNIKISQAEAVHPDELDEEFD 895
            HVL+LML CFPELILPT+FLYMFLIG+WN+RYRPRYPPHMN +ISQAEAVHPDELDEEFD
Sbjct: 837  HVLFLMLVCFPELILPTIFLYMFLIGVWNFRYRPRYPPHMNTRISQAEAVHPDELDEEFD 896

Query: 896  TFPTSRSPELVRMRYDRLRSVAGRIQTVVGDVATQGERLQALISWRDPRATAIFITFCLV 955
            TFPTSRSP+LVRMRYDRLRSVAGRIQTVVGD+A+QGER+QAL+SWRDPRAT+IFIT  L+
Sbjct: 897  TFPTSRSPDLVRMRYDRLRSVAGRIQTVVGDLASQGERIQALLSWRDPRATSIFITLSLL 956

Query: 956  AALVLFLTPFQVIAALAGFWVMRHPRFRRRLPSVPINFFRRLPARTDSML 1005
            +ALVL++TPFQ +A LAGF++MRHPRFR RLP  P+NFFRRLP+RTD+ML
Sbjct: 957  SALVLYVTPFQAVAGLAGFYIMRHPRFRHRLPCTPVNFFRRLPSRTDTML 1006

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357481633|ref|XP_003611102.1| Glutathione peroxidase [Medicago truncatula] gi|355512437|gb|AES94060.1| Glutathione peroxidase [Medicago truncatula]

 Score = 1739 bits (4505), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 840/1007 (83%), Positives = 927/1007 (92%), Gaps = 2/1007 (0%)

Query: 1    MRNLKLGVQVVGAHNLLPKDGKGSSSAFVELYFDGQRFRTTIKENDLNPVWNESFYFNIS 60
            M NLKLGV VVGAHNLLPKDG+GSS+AFVELYFDGQ+FRTTIKE DLNPVWNESFYFNIS
Sbjct: 1    MINLKLGVDVVGAHNLLPKDGEGSSNAFVELYFDGQKFRTTIKEKDLNPVWNESFYFNIS 60

Query: 61   DASKLHYLTLEAYIYNNIGDTNSRSFLGKVCLTGNSFVPLSDSVVLHYPLEKRGIFSHVR 120
            D S LHYLTLEAY++ +   TNS SFLGKV LTG SFVP +D+VVLHYPLEKRGIFS VR
Sbjct: 61   DPSNLHYLTLEAYVHCHSKATNSSSFLGKVSLTGTSFVPQADAVVLHYPLEKRGIFSRVR 120

Query: 121  GELGLKVYITDDPSIKSSTPLPAAETFSTKDPSITHTHAQPVANPVTGDTVES-RHTFHH 179
            GELGLK+YITD+P+IKSS P P+ E+  T + +  H     + N ++ D VES RHTFHH
Sbjct: 121  GELGLKIYITDNPTIKSSIPNPSVESMPTNNHAEVHGPTGSMRNGLSRDKVESSRHTFHH 180

Query: 180  LPNPNHHQHHHQHHPSTTVVNRHVPKYEADEMKS-EPQPPKLVHMYSAASSQSADYALKE 238
            LPN NH +H HQ H +      +VPKYEADEMK+ +PQP KLVHM+S  S Q  D+ALKE
Sbjct: 181  LPNTNHQRHQHQQHSTGYADTHYVPKYEADEMKADQPQPMKLVHMHSVTSLQPVDFALKE 240

Query: 239  TSPYLGGGKVVGGRVIHADKTASTYDLVERMYFLYVRVVKARELPAMDLTGSIDPFVEVK 298
            TSP+LGGG+VVGGRV+H DKTASTYDLVERMYFLYVRVVKARELP+MDLTGS+DPFVEV+
Sbjct: 241  TSPFLGGGRVVGGRVVHKDKTASTYDLVERMYFLYVRVVKARELPSMDLTGSLDPFVEVR 300

Query: 299  IGNYKGITKHYEKNQNPQWHQVFAFSRDRMQASVLEVVIKDKDLVKDDFVGIVRFDINEV 358
            IGNY+GITKHY+KNQNP+WHQVFAFS++RMQASVLEVVIKDKDL+KDDFVGIVRFDINE+
Sbjct: 301  IGNYRGITKHYDKNQNPEWHQVFAFSKERMQASVLEVVIKDKDLIKDDFVGIVRFDINEI 360

Query: 359  PLRVPPDSPLAPEWYRLEDKKGEKIKGELMLAVWIGTQADEAFSDAWHSDAATPVDSTPA 418
            PLRVPPDSPLAPEWYRL+DKKGEK+KGELMLAVWIGTQADEAFS+AWHSDAA+PVDSTPA
Sbjct: 361  PLRVPPDSPLAPEWYRLDDKKGEKVKGELMLAVWIGTQADEAFSEAWHSDAASPVDSTPA 420

Query: 419  ITAVIRSKVYHSPRLWYVRVNVVEAQDLVPTEKNHFPDVYVKAQIGNQVLKTKICQARTL 478
             T VIRSKVYH+PRLWYVRVNVVEAQDL+PTEKN FPD YVK QIGNQVLKTK   ARTL
Sbjct: 421  TTTVIRSKVYHAPRLWYVRVNVVEAQDLIPTEKNRFPDAYVKVQIGNQVLKTKTVPARTL 480

Query: 479  SAVWNEDLLFVAAEPFEDHLVLTVEDRVGPGKDEIIGRVIIPLSAIEKRADERIIHSRWF 538
            +  WNEDLLFVAAEPFEDH++L+VEDRVGPGKDEIIGRVIIPL+A+E+RAD+RIIHSRWF
Sbjct: 481  NPQWNEDLLFVAAEPFEDHVILSVEDRVGPGKDEIIGRVIIPLNAVERRADDRIIHSRWF 540

Query: 539  NLEKPVAVDVDQLKKEKFSSRIHLRVCLDGGYHVLDESTHYSSDLRPTAKQLWRPSIGIL 598
            NLEKPVAVDVDQLK+EKF+SRI LR+CLDGGYHVLDESTHYSSDLRPTAKQLWRP IG+L
Sbjct: 541  NLEKPVAVDVDQLKREKFASRIQLRLCLDGGYHVLDESTHYSSDLRPTAKQLWRPPIGVL 600

Query: 599  ELGILNAVGLHPMKTRDGRGTSDTYCVAKYGHKWVRTRTLVDNLSPKYNEQYTWEVFDPA 658
            ELG+LNA+GLHPMKTRDGRGTSDTYCVAKYGHKWVRTRTLVDNLSPKYNEQYTWEVFDPA
Sbjct: 601  ELGVLNAIGLHPMKTRDGRGTSDTYCVAKYGHKWVRTRTLVDNLSPKYNEQYTWEVFDPA 660

Query: 659  TVLTVGVFDNSQLGEKSNGNKDLKIGKVRIRISTLETGRIYTHSYPLLVLHPTGVKKMGE 718
            TVLTVGVFDNSQ+  +   NKDLKIGKVRIRISTLETGRIYTHSYPLLVLHPTGVKKMGE
Sbjct: 661  TVLTVGVFDNSQISGEKGHNKDLKIGKVRIRISTLETGRIYTHSYPLLVLHPTGVKKMGE 720

Query: 719  LHLAIRFSCTSFANMLYLYSRPLLPKMHYVRPFSIMQLDMLRHQAVNIVAARLGRAEPPL 778
            LHLAIRFSCTSFANMLYLYS+PLLPKMHYVRPF++MQLDMLRHQAVNIVAARLGRAEPPL
Sbjct: 721  LHLAIRFSCTSFANMLYLYSKPLLPKMHYVRPFAVMQLDMLRHQAVNIVAARLGRAEPPL 780

Query: 779  RKEVVEYMSDVDSHLWSMRRSKANFFRLMTVFSGLFAVGKWFADICMWKNPITTVLVHVL 838
            RKEVVEYMSDVDSHLWSMRRSKANFFRLMTVFSG+FAVGKW  DICMW NPITTVLVHVL
Sbjct: 781  RKEVVEYMSDVDSHLWSMRRSKANFFRLMTVFSGVFAVGKWLGDICMWLNPITTVLVHVL 840

Query: 839  YLMLACFPELILPTVFLYMFLIGIWNYRYRPRYPPHMNIKISQAEAVHPDELDEEFDTFP 898
            +LML CFPELILPT+FLY+FLIG+WN+RYRPRYPPHMN +ISQA+ VHPDE+DEEFDTFP
Sbjct: 841  FLMLVCFPELILPTLFLYLFLIGVWNFRYRPRYPPHMNTRISQADVVHPDEMDEEFDTFP 900

Query: 899  TSRSPELVRMRYDRLRSVAGRIQTVVGDVATQGERLQALISWRDPRATAIFITFCLVAAL 958
            TS++P+LVRMRYDRLRSVAGRIQTVVGD+A+QGER+ AL+SWRDPRAT++FITFCL+AAL
Sbjct: 901  TSKNPDLVRMRYDRLRSVAGRIQTVVGDLASQGERIHALLSWRDPRATSLFITFCLLAAL 960

Query: 959  VLFLTPFQVIAALAGFWVMRHPRFRRRLPSVPINFFRRLPARTDSML 1005
            VL++TPFQ++A LAGF+ MRHPRFR RLPS PINFFRRLPARTDSML
Sbjct: 961  VLYVTPFQMVAGLAGFYFMRHPRFRHRLPSAPINFFRRLPARTDSML 1007

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255537443|ref|XP_002509788.1| synaptotagmin, putative [Ricinus communis] gi|223549687|gb|EEF51175.1| synaptotagmin, putative [Ricinus communis]

 Score = 1730 bits (4480), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 845/1008 (83%), Positives = 899/1008 (89%), Gaps = 31/1008 (3%)

Query: 1    MRNLKLGVQVVGAHNLLPKDGKGSSSAFVELYFDGQRFRTTIKENDLNPVWNESFYFNIS 60
            M NLKLGV VV AHNLLPKDG+GSSSAFVELYFDGQRFRTTIKE DLNPVWNESFYFNIS
Sbjct: 1    MINLKLGVDVVSAHNLLPKDGQGSSSAFVELYFDGQRFRTTIKEKDLNPVWNESFYFNIS 60

Query: 61   DASKLHYLTLEAYIYNNIGDTNSRSFLGKVCLTGNSFVPLSDSVVLHYPLEKRGIFSHVR 120
            D + LHYLTL+ Y+YNN+  T+SR+FLGKV LTGNSFVP SD+VVLHYPLEKRGIFS VR
Sbjct: 61   DPTNLHYLTLDVYVYNNVRATSSRTFLGKVSLTGNSFVPHSDAVVLHYPLEKRGIFSRVR 120

Query: 121  GELGLKVYITDDPSIKSSTPLPAAETFSTKDPSITHTHAQ---PVANPVTGDTVESRHTF 177
            GELGLKVY+TDDPSIKSSTPLPA E+   K+  + H       PV+  V  D V+ RHTF
Sbjct: 121  GELGLKVYVTDDPSIKSSTPLPAVESLPAKESGLNHGQDHLVPPVSVSVPQDRVQ-RHTF 179

Query: 178  HHLPNPNHHQHHHQHHPSTTVVNRHVPKYEADEMKSEPQPPKLVHMYSAASSQSADYALK 237
            HHLPN NH Q  HQHH S   V  HVPKY ADEMK+E  PPKLV MYSA++SQ  DYALK
Sbjct: 180  HHLPNTNHQQQQHQHHSSAPAVTHHVPKYVADEMKAEAPPPKLVRMYSASASQPVDYALK 239

Query: 238  ETSPYLGGGKVVGGRVIHADKTASTYDLVERMYFLYVRVVKARELPAMDLTGSIDPFVEV 297
            ETSP LGGG+VV GRVIH DKTASTYDLVERM+FLYVRVVKAR+LPAMD+TGSIDPFVEV
Sbjct: 240  ETSPLLGGGRVVHGRVIHGDKTASTYDLVERMFFLYVRVVKARDLPAMDVTGSIDPFVEV 299

Query: 298  KIGNYKGITKHYEKNQNPQWHQVFAFSRDRMQASVLEVVIKDKDLVKDDFVGIVRFDINE 357
            KIGNYKGITKH+EK QNP+W+QVFAFSR+RMQAS+LEVVIKDKDLVKDDFVGIV      
Sbjct: 300  KIGNYKGITKHFEKKQNPEWNQVFAFSRERMQASILEVVIKDKDLVKDDFVGIVS----- 354

Query: 358  VPLRVPPDSPLAPEWYRLEDKKGEKIKGELMLAVWIGTQADEAFSDAWHSDAATPVDSTP 417
                      L  EWYRLED+ G KIKGELMLAVWIGTQADEAFSDAWHSDAA P+DS  
Sbjct: 355  ----------LCSEWYRLEDR-GRKIKGELMLAVWIGTQADEAFSDAWHSDAAMPLDS-- 401

Query: 418  AITAVIRSKVYHSPRLWYVRVNVVEAQDLVPTEKNHFPDVYVKAQIGNQVLKTKICQART 477
                     VYH+PRLWYVRVNVVEAQDL+P EKN FPDVYVK QIGNQVLKTK CQAR+
Sbjct: 402  ---------VYHAPRLWYVRVNVVEAQDLIPAEKNRFPDVYVKVQIGNQVLKTKTCQARS 452

Query: 478  LSAVWNEDLLFVAAEPFEDHLVLTVEDRVGPGKDEIIGRVIIPLSAIEKRADERIIHSRW 537
            LSA WNEDLLFVA+E FEDHLVL+VEDRVGPGKDEIIGRVIIPLS++EKRAD+RIIHSRW
Sbjct: 453  LSAFWNEDLLFVASETFEDHLVLSVEDRVGPGKDEIIGRVIIPLSSVEKRADDRIIHSRW 512

Query: 538  FNLEKPVAVDVDQLKKEKFSSRIHLRVCLDGGYHVLDESTHYSSDLRPTAKQLWRPSIGI 597
            FNLEKPVAVDVDQLKKEKFSSRIHLRVCLDGGYHVLDESTHYSSDLRPTAKQLWRP IG+
Sbjct: 513  FNLEKPVAVDVDQLKKEKFSSRIHLRVCLDGGYHVLDESTHYSSDLRPTAKQLWRPPIGL 572

Query: 598  LELGILNAVGLHPMKTRDGRGTSDTYCVAKYGHKWVRTRTLVDNLSPKYNEQYTWEVFDP 657
            LELGILNAVGLHPMKTRDGRGTSDTYCVAKYGHKWVRTRTL+DNL PKYNEQYTWEVFDP
Sbjct: 573  LELGILNAVGLHPMKTRDGRGTSDTYCVAKYGHKWVRTRTLIDNLHPKYNEQYTWEVFDP 632

Query: 658  ATVLTVGVFDNSQLGEKSNGNKDLKIGKVRIRISTLETGRIYTHSYPLLVLHPTGVKKMG 717
            ATVLTVGVFDN+QLGEK +  KD KIGKVRIRISTLET R+YTHSYPLLVLHPTGVKKMG
Sbjct: 633  ATVLTVGVFDNNQLGEKGSNGKDQKIGKVRIRISTLETSRVYTHSYPLLVLHPTGVKKMG 692

Query: 718  ELHLAIRFSCTSFANMLYLYSRPLLPKMHYVRPFSIMQLDMLRHQAVNIVAARLGRAEPP 777
            ELHLAIRF+CTSF NMLY YS+PLLPKMHYVRPF++MQLDMLRHQ+VNIVA RLGRAEPP
Sbjct: 693  ELHLAIRFTCTSFVNMLYQYSKPLLPKMHYVRPFTVMQLDMLRHQSVNIVALRLGRAEPP 752

Query: 778  LRKEVVEYMSDVDSHLWSMRRSKANFFRLMTVFSGLFAVGKWFADICMWKNPITTVLVHV 837
            LRKEVVEYMSDVDSHLWSMRRSKANFFRLMTVFSGLFA GKWF DICMW+NPITTVLVHV
Sbjct: 753  LRKEVVEYMSDVDSHLWSMRRSKANFFRLMTVFSGLFAAGKWFGDICMWRNPITTVLVHV 812

Query: 838  LYLMLACFPELILPTVFLYMFLIGIWNYRYRPRYPPHMNIKISQAEAVHPDELDEEFDTF 897
            LYLMLACFPELILPTVFLYMFLIG+WNYRYRPRYPPHMN KISQAE VHPDELDEEFDTF
Sbjct: 813  LYLMLACFPELILPTVFLYMFLIGVWNYRYRPRYPPHMNTKISQAETVHPDELDEEFDTF 872

Query: 898  PTSRSPELVRMRYDRLRSVAGRIQTVVGDVATQGERLQALISWRDPRATAIFITFCLVAA 957
            PTSRSPELVRMRYDRLRSVAGRIQTVVGD+ATQGER Q+L+SWRDPRATAIFI FCLVAA
Sbjct: 873  PTSRSPELVRMRYDRLRSVAGRIQTVVGDIATQGERFQSLLSWRDPRATAIFILFCLVAA 932

Query: 958  LVLFLTPFQVIAALAGFWVMRHPRFRRRLPSVPINFFRRLPARTDSML 1005
            LVLF+TPFQVIAAL+GF+ MRHPRFR R PSVPINFFRRLPARTDSML
Sbjct: 933  LVLFVTPFQVIAALSGFYAMRHPRFRYRTPSVPINFFRRLPARTDSML 980

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42566473|ref|NP_192898.2| C2 calcium/lipid-binding and phosphoribosyltransferase C-terminal domain-containing protein [Arabidopsis thaliana] gi|28973638|gb|AAO64141.1| unknown protein [Arabidopsis thaliana] gi|30793935|gb|AAP40420.1| unknown protein [Arabidopsis thaliana] gi|110737276|dbj|BAF00585.1| phosphoribosylanthranilate transferase like protein [Arabidopsis thaliana] gi|332657630|gb|AEE83030.1| C2 calcium/lipid-binding and phosphoribosyltransferase C-terminal domain-containing protein [Arabidopsis thaliana]

 Score = 1633 bits (4229), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 783/1020 (76%), Positives = 900/1020 (88%), Gaps = 26/1020 (2%)

Query: 1    MRNLKLGVQVVGAHNLLPKDGKGSSSAFVELYFDGQRFRTTIKENDLNPVWNESFYFNIS 60
            M NLKLGV V+GAHNL PKDG+G+S+A+VELYFDGQ+ RTTIK+ DLNPVWNESF+FNIS
Sbjct: 3    MSNLKLGVDVIGAHNLFPKDGQGTSNAYVELYFDGQKHRTTIKDRDLNPVWNESFFFNIS 62

Query: 61   DASKLHYLTLEAYIYNNIGDTNSRSFLGKVCLTGNSFVPLSDSVVLHYPLEKRGIFSHVR 120
            D S+LHYL LEA  Y++   TN RSFLGKV L+G SFVP SD+VVLH+P+E+RGIFS VR
Sbjct: 63   DPSRLHYLNLEAQAYSHNRSTNGRSFLGKVSLSGTSFVPHSDAVVLHFPMERRGIFSRVR 122

Query: 121  GELGLKVYITDDPSIKSSTPLPAAETFSTKDPSITHTHAQPVANPVTGDTVESRHTFHHL 180
            GELGLKVYITD+ S+KSS    + +     DP++      P A  V   + + RH F++L
Sbjct: 123  GELGLKVYITDEASLKSSAA--SNDHPDNLDPAL------PRAMNVEHRS-DKRHVFYNL 173

Query: 181  PN-PNHHQHHHQHHPSTTVV--------NRH----VPKYEADEMKSEP-QPPKLVHMYSA 226
            PN    HQH H   P+ +          N H    VPK++ DEM+SEP +P KLVH +S 
Sbjct: 174  PNSAQEHQHQHPQGPNQSSSLAAEQDNHNEHHHHYVPKHQVDEMRSEPARPSKLVHAHSI 233

Query: 227  ASSQSADYALKETSPYLGGGKVVGGRVIHADKTA-STYDLVERMYFLYVRVVKARELPAM 285
            AS+Q AD+ALKETSP+LGGG+VVGGRVIH DKTA STYDLVERMYFLYVRVVKARELP M
Sbjct: 234  ASAQPADFALKETSPHLGGGRVVGGRVIHKDKTATSTYDLVERMYFLYVRVVKARELPIM 293

Query: 286  DLTGSIDPFVEVKIGNYKGITKHYEKNQNPQWHQVFAFSRDRMQASVLEVVIKDKDLVKD 345
            D+TGS+DPFVEV++GNYKGIT+H+EK Q+P+W+QVFAF+++RMQASVLEVV+KDKDL+KD
Sbjct: 294  DITGSVDPFVEVRVGNYKGITRHFEKRQHPEWNQVFAFAKERMQASVLEVVVKDKDLLKD 353

Query: 346  DFVGIVRFDINEVPLRVPPDSPLAPEWYRLEDKKGEKIKGELMLAVWIGTQADEAFSDAW 405
            D+VG VRFDIN+VPLRVPPDSPLAP+WYRLEDKKGEKIKGELMLAVWIGTQADEAFSDAW
Sbjct: 354  DYVGFVRFDINDVPLRVPPDSPLAPQWYRLEDKKGEKIKGELMLAVWIGTQADEAFSDAW 413

Query: 406  HSDAATPVDSTPAITAVIRSKVYHSPRLWYVRVNVVEAQDLVPTEKNHFPDVYVKAQIGN 465
            HSDAA PVD +PAI+AV+RSKVYH+PRLWYVRVNV+EAQDL+PT+K  FPDVYVKAQ+GN
Sbjct: 414  HSDAAMPVDCSPAISAVLRSKVYHAPRLWYVRVNVIEAQDLIPTDKTRFPDVYVKAQLGN 473

Query: 466  QVLKTKICQARTLSAVWNEDLLFVAAEPFEDHLVLTVEDRVGPGKDEIIGRVIIPLSAIE 525
            QV+KT+ CQARTL AVWNED LFV AEPFEDHLVLTVEDRV PGKDEI+GR  IPL+ +E
Sbjct: 474  QVMKTRPCQARTLGAVWNEDFLFVVAEPFEDHLVLTVEDRVAPGKDEIVGRTYIPLNTVE 533

Query: 526  KRADERIIHSRWFNLEKPVAVDVDQLKKEKFSSRIHLRVCLDGGYHVLDESTHYSSDLRP 585
            KRAD+ +IH+RW+NLE+PV VDVDQLK+EKFS RIHLRVCL+GGYHVLDESTHYSSDLRP
Sbjct: 534  KRADDHMIHARWYNLERPVIVDVDQLKREKFSMRIHLRVCLEGGYHVLDESTHYSSDLRP 593

Query: 586  TAKQLWRPSIGILELGILNAVGLHPMKTRDGRGTSDTYCVAKYGHKWVRTRTLVDNLSPK 645
            +A+ LWR  IG+LELGILNAVGLHPMKTR+GRGTSDT+CV KYG KWVRTRT+VDNL PK
Sbjct: 594  SARPLWRQPIGVLELGILNAVGLHPMKTREGRGTSDTFCVGKYGQKWVRTRTMVDNLCPK 653

Query: 646  YNEQYTWEVFDPATVLTVGVFDNSQLGEKSNGNKDLKIGKVRIRISTLETGRIYTHSYPL 705
            YNEQYTWEVFDPATVLTVGVFDN QLGEK  GN+D+KIGK+RIR+STLETGRIYTHSYPL
Sbjct: 654  YNEQYTWEVFDPATVLTVGVFDNGQLGEK--GNRDVKIGKIRIRLSTLETGRIYTHSYPL 711

Query: 706  LVLHPTGVKKMGELHLAIRFSCTSFANMLYLYSRPLLPKMHYVRPFSIMQLDMLRHQAVN 765
            LVLHPTGVKKMGELH+A+RF+C SFANMLY YS+PLLPKMHYVRPFS+MQ DMLRHQAVN
Sbjct: 712  LVLHPTGVKKMGELHMAVRFTCISFANMLYQYSKPLLPKMHYVRPFSVMQQDMLRHQAVN 771

Query: 766  IVAARLGRAEPPLRKEVVEYMSDVDSHLWSMRRSKANFFRLMTVFSGLFAVGKWFADICM 825
            IVAARLGRAEPPLRKE++E+MSD DSHLWSMR+SKANFFR+MTVFSG+ AVGKWF+DIC 
Sbjct: 772  IVAARLGRAEPPLRKEIIEFMSDTDSHLWSMRKSKANFFRMMTVFSGVIAVGKWFSDICS 831

Query: 826  WKNPITTVLVHVLYLMLACFPELILPTVFLYMFLIGIWNYRYRPRYPPHMNIKISQAEAV 885
            W+NPITTVLVHVL+LML C PELILPT+FLYMFLIG+WNYR+RPRYPPHMN KISQAEAV
Sbjct: 832  WRNPITTVLVHVLFLMLVCLPELILPTMFLYMFLIGLWNYRFRPRYPPHMNTKISQAEAV 891

Query: 886  HPDELDEEFDTFPTSRSPELVRMRYDRLRSVAGRIQTVVGDVATQGERLQALISWRDPRA 945
            HPDELDEEFDTFPT+R+P++VR+RYDRLRSVAGRIQTV+GD+ATQGER QAL+SWRDPRA
Sbjct: 892  HPDELDEEFDTFPTTRNPDMVRLRYDRLRSVAGRIQTVIGDLATQGERFQALLSWRDPRA 951

Query: 946  TAIFITFCLVAALVLFLTPFQVIAALAGFWVMRHPRFRRRLPSVPINFFRRLPARTDSML 1005
            TAIF+  C +AA+V F+TP Q++ ALAGF+ MRHPRFR RLPSVP+NFFRRLPARTDSML
Sbjct: 952  TAIFVILCFIAAIVFFITPIQIVVALAGFFTMRHPRFRHRLPSVPVNFFRRLPARTDSML 1011

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255541548|ref|XP_002511838.1| synaptotagmin, putative [Ricinus communis] gi|223549018|gb|EEF50507.1| synaptotagmin, putative [Ricinus communis]

 Score = 1628 bits (4217), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 770/1021 (75%), Positives = 891/1021 (87%), Gaps = 20/1021 (1%)

Query: 1    MRNLKLGVQVVGAHNLLPKDGKGSSSAFVELYFDGQRFRTTIKENDLNPVWNESFYFNIS 60
            M NL+LGV+VVGAH+L+PKDG+GS+SAFVE++FD Q+FRTT KE DLNPVWNESFYFNIS
Sbjct: 1    MNNLRLGVEVVGAHDLMPKDGQGSASAFVEIHFDHQKFRTTTKEKDLNPVWNESFYFNIS 60

Query: 61   DASKLHYLTLEAYIYNNIGDTNSRSFLGKVCLTGNSFVPLSDSVVLHYPLEKRGIFSHVR 120
            D + L  LTLEAY+YN+  +  ++S LGKV LTG SFVP SD+VVLHYPLEKRG+FS V+
Sbjct: 61   DPNNLSNLTLEAYVYNHGKENTTKSCLGKVRLTGTSFVPYSDAVVLHYPLEKRGLFSRVK 120

Query: 121  GELGLKVYITDDPSIKSSTPLPA------AETFSTKDPSITHTHAQPVANPVTGDTVESR 174
            GELGLKV++TD+PSI+SS PLPA      +++ ST+           V    + D  ESR
Sbjct: 121  GELGLKVFVTDNPSIRSSNPLPAMNSSLFSDSHSTQGQQPEQQIPSSVPKVFSNDKTESR 180

Query: 175  HTFHHLPNPNHHQHHHQHHPSTTVVNRHVP--------KYEADEMKSEPQPPKLVHMYSA 226
            HTFHHLPN +  Q   Q       + +HVP         Y A EM+SEPQ P+ V M+S 
Sbjct: 181  HTFHHLPNTSQPQSQPQ---PQPQMQQHVPVAAAMQTMSYGAQEMRSEPQAPRAVRMFSD 237

Query: 227  ASSQSADYALKETSPYLGGGKVVGGRVIHADKTASTYDLVERMYFLYVRVVKARELPAMD 286
            +SSQ ADYALKETSP+LGGG++VGGRVI  D+ ASTYDLVE+M +L+VRVVKARELP+ D
Sbjct: 238  SSSQPADYALKETSPFLGGGQIVGGRVIRRDRIASTYDLVEQMKYLFVRVVKARELPSKD 297

Query: 287  LTGSIDPFVEVKIGNYKGITKHYEKNQNPQWHQVFAFSRDRMQASVLEVVIKDKDLVKDD 346
            +TGS+DP+VEV++GNYKGITKH+EK QNP+W++VFAF+RDRMQ+SVLEVV+KDKDLVKDD
Sbjct: 298  VTGSLDPYVEVRVGNYKGITKHFEKKQNPEWNEVFAFARDRMQSSVLEVVVKDKDLVKDD 357

Query: 347  FVGIVRFDINEVPLRVPPDSPLAPEWYRLEDKKGEKIKGELMLAVWIGTQADEAFSDAWH 406
            FVGIVRFD+NE+P RVPPDSPLAPEWYRLEDKKG K KGELMLAVW GTQADEAF DAWH
Sbjct: 358  FVGIVRFDMNEIPTRVPPDSPLAPEWYRLEDKKGNKDKGELMLAVWYGTQADEAFPDAWH 417

Query: 407  SDAATPVDSTPAITAVIRSKVYHSPRLWYVRVNVVEAQDLVPTEKNHFPDVYVKAQIGNQ 466
            SDA TP DS+ AI+A IRSKVYHSPRLWYVRVNV+EAQDL+  +KN FPD YVK QIGNQ
Sbjct: 418  SDAVTPTDSSSAISAHIRSKVYHSPRLWYVRVNVIEAQDLIVPDKNRFPDTYVKVQIGNQ 477

Query: 467  VLKTKICQARTLSAVWNEDLLFVAAEPFEDHLVLTVEDRVGPGKDEIIGRVIIPLSAIEK 526
            +LKTK+ Q RT++ +WNEDL+FVAAEPFEDHLVL+VEDRVGP KDE IG+V+IPL+++EK
Sbjct: 478  ILKTKMVQTRTMNPIWNEDLMFVAAEPFEDHLVLSVEDRVGPNKDESIGKVVIPLNSVEK 537

Query: 527  RADERIIHSRWFNLEKPV--AVDVDQLKKEKFSSRIHLRVCLDGGYHVLDESTHYSSDLR 584
            RAD+RII SRWFNLEK +  A+D  Q KK+KFSSR+HLRV LDGGYHVLDESTHYSSDLR
Sbjct: 538  RADDRIIRSRWFNLEKSISAAMDEHQAKKDKFSSRLHLRVVLDGGYHVLDESTHYSSDLR 597

Query: 585  PTAKQLWRPSIGILELGILNAVGLHPMKTRDGRGTSDTYCVAKYGHKWVRTRTLVDNLSP 644
            PTAKQLW+PSIG+LELGILNA GLHPMKTRDG+GTSDTYCVAKYGHKWVRTRT++++LSP
Sbjct: 598  PTAKQLWKPSIGVLELGILNADGLHPMKTRDGKGTSDTYCVAKYGHKWVRTRTIINSLSP 657

Query: 645  KYNEQYTWEVFDPATVLTVGVFDNSQLGEKSNGNKDLKIGKVRIRISTLETGRIYTHSYP 704
            KYNEQYTWEV+DPATVLT+GVFDNS +G  SNGN+D+KIGKVRIRISTLETGR+YTHSYP
Sbjct: 658  KYNEQYTWEVYDPATVLTIGVFDNSHIG-GSNGNRDIKIGKVRIRISTLETGRVYTHSYP 716

Query: 705  LLVLHPTGVKKMGELHLAIRFSCTSFANMLYLYSRPLLPKMHYVRPFSIMQLDMLRHQAV 764
            LLVLH +GVKKMGELH+AIRFS TS ANM++LY+RPLLPKMHY RP ++MQ D+LRHQAV
Sbjct: 717  LLVLHSSGVKKMGELHMAIRFSYTSMANMMFLYTRPLLPKMHYTRPLTVMQQDLLRHQAV 776

Query: 765  NIVAARLGRAEPPLRKEVVEYMSDVDSHLWSMRRSKANFFRLMTVFSGLFAVGKWFADIC 824
            NIVAARL RAEPPLRKEVVEYMSD DSHLWSMRRSKANFFRLM+VFSGLF+VGKWF ++C
Sbjct: 777  NIVAARLSRAEPPLRKEVVEYMSDADSHLWSMRRSKANFFRLMSVFSGLFSVGKWFGEVC 836

Query: 825  MWKNPITTVLVHVLYLMLACFPELILPTVFLYMFLIGIWNYRYRPRYPPHMNIKISQAEA 884
            MWKNPITTVLVH+L++ML CFPELILPTVFLYMFLIG WNYR+RPRYPPHMN +IS A+A
Sbjct: 837  MWKNPITTVLVHLLFVMLVCFPELILPTVFLYMFLIGFWNYRFRPRYPPHMNTRISCADA 896

Query: 885  VHPDELDEEFDTFPTSRSPELVRMRYDRLRSVAGRIQTVVGDVATQGERLQALISWRDPR 944
            VHPDELDEEFDTFPT+RSPE+VRMRYDRLRSVAGRIQTVVGDVATQGER+Q+L+SWRDPR
Sbjct: 897  VHPDELDEEFDTFPTTRSPEIVRMRYDRLRSVAGRIQTVVGDVATQGERVQSLLSWRDPR 956

Query: 945  ATAIFITFCLVAALVLFLTPFQVIAALAGFWVMRHPRFRRRLPSVPINFFRRLPARTDSM 1004
            AT IF+TFC VAA+VL+ TPFQV+A +AGF+ MRHPRFR R PS+PINFFRRLPARTDSM
Sbjct: 957  ATTIFLTFCFVAAVVLYATPFQVLALVAGFYSMRHPRFRHRTPSIPINFFRRLPARTDSM 1016

Query: 1005 L 1005
            L
Sbjct: 1017 L 1017

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297813641|ref|XP_002874704.1| NADPH-dependent thioredoxin reductase B [Arabidopsis lyrata subsp. lyrata] gi|297320541|gb|EFH50963.1| NADPH-dependent thioredoxin reductase B [Arabidopsis lyrata subsp. lyrata]

 Score = 1627 bits (4212), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 779/1020 (76%), Positives = 898/1020 (88%), Gaps = 28/1020 (2%)

Query: 1    MRNLKLGVQVVGAHNLLPKDGKGSSSAFVELYFDGQRFRTTIKENDLNPVWNESFYFNIS 60
            M NLKLGV V+GAHNL PKDG+G+S+A+VELYFDGQ+ RTTIK+ DLNPVW+ESF+FNIS
Sbjct: 3    MSNLKLGVDVIGAHNLFPKDGQGTSNAYVELYFDGQKHRTTIKDRDLNPVWHESFFFNIS 62

Query: 61   DASKLHYLTLEAYIYNNIGDTNSRSFLGKVCLTGNSFVPLSDSVVLHYPLEKRGIFSHVR 120
            D S+LHYL LEA  Y++   TN RSFLGKV L+G SFVP SD+VVLH+PLE+RGIFS VR
Sbjct: 63   DPSRLHYLNLEAQAYSHNRSTNGRSFLGKVSLSGTSFVPHSDAVVLHFPLERRGIFSRVR 122

Query: 121  GELGLKVYITDDPSIKSSTPLPAAETFSTKDPSITHTHAQPVANPVTGDTVESRHTFHHL 180
            GELGLKVYITD+ S+KSS    + +     DP+     A  V +       + RH F++L
Sbjct: 123  GELGLKVYITDEASLKSSAA--SNDHLDNLDPA----RAMKVEH-----RSDKRHVFYNL 171

Query: 181  PNP--NHHQHHHQHHPSTTVV-----------NRHVPKYEADEMKSEPQPP-KLVHMYSA 226
            PN    H Q H Q H  ++ +           + +VPK++ +EM+ EP PP KLVH +S 
Sbjct: 172  PNSAQEHQQQHPQGHNQSSSLAAEQDHHNEHHHHYVPKHQVNEMRPEPAPPSKLVHAHSI 231

Query: 227  ASSQSADYALKETSPYLGGGKVVGGRVIHADKTA-STYDLVERMYFLYVRVVKARELPAM 285
            AS+Q AD+ALKETSP+LGGG+VVGGRVIH D+TA STYDLVERMYFLYVRVVKARELP M
Sbjct: 232  ASAQPADFALKETSPHLGGGRVVGGRVIHKDQTATSTYDLVERMYFLYVRVVKARELPIM 291

Query: 286  DLTGSIDPFVEVKIGNYKGITKHYEKNQNPQWHQVFAFSRDRMQASVLEVVIKDKDLVKD 345
            D+TGS+DPFVEVK+GNYKGIT+H+EK Q+P+W+QVFAF+++RMQASVLEVV+KDKDL+KD
Sbjct: 292  DITGSVDPFVEVKVGNYKGITRHFEKRQHPEWNQVFAFAKERMQASVLEVVVKDKDLLKD 351

Query: 346  DFVGIVRFDINEVPLRVPPDSPLAPEWYRLEDKKGEKIKGELMLAVWIGTQADEAFSDAW 405
            D+VG VRFDIN+VPLRVPPDSPLAP+WYRLEDKKGEKIKGELMLAVWIGTQADEAFSDAW
Sbjct: 352  DYVGFVRFDINDVPLRVPPDSPLAPQWYRLEDKKGEKIKGELMLAVWIGTQADEAFSDAW 411

Query: 406  HSDAATPVDSTPAITAVIRSKVYHSPRLWYVRVNVVEAQDLVPTEKNHFPDVYVKAQIGN 465
            HSDAA PVD +PAI+AV+RSKVYH+PRLWYVRVNV+EAQD +PT+K  FPDVYVKAQ+GN
Sbjct: 412  HSDAAMPVDCSPAISAVLRSKVYHAPRLWYVRVNVIEAQDSIPTDKTRFPDVYVKAQLGN 471

Query: 466  QVLKTKICQARTLSAVWNEDLLFVAAEPFEDHLVLTVEDRVGPGKDEIIGRVIIPLSAIE 525
            QV+KT+ CQARTL AVWNED LFV AEPFEDHLVLTVEDRV PGKDEI+GR  IPL+ +E
Sbjct: 472  QVMKTRPCQARTLGAVWNEDFLFVVAEPFEDHLVLTVEDRVAPGKDEIVGRTYIPLNTVE 531

Query: 526  KRADERIIHSRWFNLEKPVAVDVDQLKKEKFSSRIHLRVCLDGGYHVLDESTHYSSDLRP 585
            KRAD+ +IH+RW+NLE+PV VDVDQLK+EKFS RIHLRVCL+GGYHVLDESTHYSSDLRP
Sbjct: 532  KRADDHMIHARWYNLERPVIVDVDQLKREKFSMRIHLRVCLEGGYHVLDESTHYSSDLRP 591

Query: 586  TAKQLWRPSIGILELGILNAVGLHPMKTRDGRGTSDTYCVAKYGHKWVRTRTLVDNLSPK 645
            +A+ LWR  IG+LELGILNAVGLHPMKTR+GRGTSDT+CV KYG KWVRTRT+VDNL PK
Sbjct: 592  SARPLWRQPIGVLELGILNAVGLHPMKTREGRGTSDTFCVGKYGQKWVRTRTMVDNLCPK 651

Query: 646  YNEQYTWEVFDPATVLTVGVFDNSQLGEKSNGNKDLKIGKVRIRISTLETGRIYTHSYPL 705
            YNEQYTWEVFDPATVLTVGVFDN QLGEK  GN+D+KIGK+RIR+STLETGRIYTHSYPL
Sbjct: 652  YNEQYTWEVFDPATVLTVGVFDNGQLGEK--GNRDVKIGKIRIRLSTLETGRIYTHSYPL 709

Query: 706  LVLHPTGVKKMGELHLAIRFSCTSFANMLYLYSRPLLPKMHYVRPFSIMQLDMLRHQAVN 765
            LVLHPTGVKKMGELH+A+RF+C SFANMLY YS+PLLPKMHYVRPFS+MQ DMLRHQAVN
Sbjct: 710  LVLHPTGVKKMGELHMAVRFTCISFANMLYQYSKPLLPKMHYVRPFSVMQQDMLRHQAVN 769

Query: 766  IVAARLGRAEPPLRKEVVEYMSDVDSHLWSMRRSKANFFRLMTVFSGLFAVGKWFADICM 825
            IVAARLGRAEPPLRKE++E+MSD DSHLWSMR+SKANFFR+MTVFSG+ AVGKWF+DIC 
Sbjct: 770  IVAARLGRAEPPLRKEIIEFMSDTDSHLWSMRKSKANFFRMMTVFSGVIAVGKWFSDICS 829

Query: 826  WKNPITTVLVHVLYLMLACFPELILPTVFLYMFLIGIWNYRYRPRYPPHMNIKISQAEAV 885
            W+NPITTVLVHVL+LML C PELILPT+FLYMFLIG+WNYR+RPRYPPHMN KISQAEAV
Sbjct: 830  WRNPITTVLVHVLFLMLVCLPELILPTMFLYMFLIGLWNYRFRPRYPPHMNTKISQAEAV 889

Query: 886  HPDELDEEFDTFPTSRSPELVRMRYDRLRSVAGRIQTVVGDVATQGERLQALISWRDPRA 945
            HPDELDEEFDTFPT+R+P++VR+RYDRLRSVAGRIQTV+GD+ATQGER QAL+SWRDPRA
Sbjct: 890  HPDELDEEFDTFPTTRNPDMVRLRYDRLRSVAGRIQTVIGDLATQGERFQALLSWRDPRA 949

Query: 946  TAIFITFCLVAALVLFLTPFQVIAALAGFWVMRHPRFRRRLPSVPINFFRRLPARTDSML 1005
            TAIF+ FC +AA+V F+TP Q++ ALAGF+ MRHPRFR RLPSVP+NFFRRLPARTDSML
Sbjct: 950  TAIFVIFCFLAAIVFFITPIQIVVALAGFFTMRHPRFRHRLPSVPVNFFRRLPARTDSML 1009

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356495672|ref|XP_003516698.1| PREDICTED: uncharacterized protein LOC100817962, partial [Glycine max]

 Score = 1624 bits (4206), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 790/963 (82%), Positives = 874/963 (90%), Gaps = 9/963 (0%)

Query: 48   NPVWNESFYFNISDASKLHYLTLEAYIYNNIGDTNSRSFLGKVCLTGNSFVPLSDSVVLH 107
            NP++N +F+  +SD S LHYLTL+AY++ +   TNS SFLGKV LTG SFVP SD++VLH
Sbjct: 1    NPLFNITFFVGVSDPSNLHYLTLDAYVHCHTKATNSTSFLGKVSLTGTSFVPYSDAIVLH 60

Query: 108  YPLEKRGIFSHVRGELGLKVYITDDPSIKSSTPLPAAETFSTKDPSITHTHAQPVANPVT 167
            YPLEKRGIFS VRGE+GLKVYIT+DP+IKSS P PA E+  T + S TH   +  A+ +T
Sbjct: 61   YPLEKRGIFSRVRGEIGLKVYITNDPNIKSSIPTPAVESMPTNNSSSTHAEVRAPASTMT 120

Query: 168  G----DTVESRHTFHHLPNPNHHQHHHQHHPSTTVVNRHVPKYEADEMKSEPQPPKLVHM 223
                 + V+SRHTFHHLPN +HHQH             +V KYEAD MKSEPQP KLV  
Sbjct: 121  NNFPNEKVDSRHTFHHLPNTSHHQHQQHSSGFAD--THYVTKYEADAMKSEPQPMKLVR- 177

Query: 224  YSAASSQSADYALKETSPYLGGGKVVGGRVIHADKTASTYDLVERMYFLYVRVVKARELP 283
             +A S Q  D+ALKETSPYLGGG+VVGGRV+H DKTASTYDLVERMYFLYVRVVKARELP
Sbjct: 178  -TATSVQPVDFALKETSPYLGGGRVVGGRVVHKDKTASTYDLVERMYFLYVRVVKARELP 236

Query: 284  AMDLTGSIDPFVEVKIGNYKGITKHYEKNQNPQWHQVFAFSRDRMQASVLEVVIKDKDLV 343
            AMD+TGS+DPFVEV+IGNYKGIT+H++KNQ+P+W+QVFAFS+DRMQASVL+VVIKDKDL+
Sbjct: 237  AMDVTGSLDPFVEVRIGNYKGITRHFDKNQSPEWNQVFAFSKDRMQASVLDVVIKDKDLI 296

Query: 344  KDDFVGIVRFDINEVPLRVPPDSPLAPEWYRLEDKKGEKIKGELMLAVWIGTQADEAFSD 403
            KDDFVGIVRFDINEVPLRVPPDSPLAPEWYRLEDKKGEKIKGELMLAVWIGTQADEAFSD
Sbjct: 297  KDDFVGIVRFDINEVPLRVPPDSPLAPEWYRLEDKKGEKIKGELMLAVWIGTQADEAFSD 356

Query: 404  AWHSDAATPVDSTPAITAVIRSKVYHSPRLWYVRVNVVEAQDLVPTEKNHFPDVYVKAQI 463
            AWHSDAATPVDST AI+AV+RSKVYH+PRLWYVRVNVVEAQDLVPTEKN FPDVY K QI
Sbjct: 357  AWHSDAATPVDSTHAISAVMRSKVYHAPRLWYVRVNVVEAQDLVPTEKNRFPDVYAKVQI 416

Query: 464  GNQVLKTKICQARTLSAVWNEDLLFVAAEPFEDHLVLTVEDRVGPGKDEIIGRVIIPLSA 523
            GNQVLKTK   ARTLSA+WNEDLLFVAAEPFEDHL ++VEDRV PGKDE+IGR+IIPL++
Sbjct: 417  GNQVLKTKTVPARTLSALWNEDLLFVAAEPFEDHLTISVEDRVSPGKDEVIGRIIIPLNS 476

Query: 524  IEKRADERIIHSRWFNLEKPVAVDVDQLKKEKFSSRIHLRVCLDGGYHVLDESTHYSSDL 583
            +E+RAD+RIIHSRWFNLEK VA+DVDQLKKEKFSSRI LR+CLDGGYHVLDESTHYSSDL
Sbjct: 477  VERRADDRIIHSRWFNLEKLVAIDVDQLKKEKFSSRIQLRLCLDGGYHVLDESTHYSSDL 536

Query: 584  RPTAKQLWRPSIGILELGILNAVGLHPMKTRDGRGTSDTYCVAKYGHKWVRTRTLVDNLS 643
            RPTAKQLW+P IG+LELG+LNAVGLHPMKTRDGRGTSDTYCVAKYGHKWVRTRT+ DNL 
Sbjct: 537  RPTAKQLWKPPIGVLELGVLNAVGLHPMKTRDGRGTSDTYCVAKYGHKWVRTRTIADNLC 596

Query: 644  PKYNEQYTWEVFDPATVLTVGVFDNSQLGEKSNG-NKDLKIGKVRIRISTLETGRIYTHS 702
            PKYNEQYTWEVFD ATVLTVGVFDNSQLGEK NG +KDLKIGKVRIRISTLETGRIYTHS
Sbjct: 597  PKYNEQYTWEVFDHATVLTVGVFDNSQLGEKGNGSSKDLKIGKVRIRISTLETGRIYTHS 656

Query: 703  YPLLVLHPTGVKKMGELHLAIRFSCTSFANMLYLYSRPLLPKMHYVRPFSIMQLDMLRHQ 762
            YPLLVLHPTGVKKMGELHLAIRFSCTS ANMLYLYSRPLLPKMHYVRPFS+ QLDMLRHQ
Sbjct: 657  YPLLVLHPTGVKKMGELHLAIRFSCTSLANMLYLYSRPLLPKMHYVRPFSVTQLDMLRHQ 716

Query: 763  AVNIVAARLGRAEPPLRKEVVEYMSDVDSHLWSMRRSKANFFRLMTVFSGLFAVGKWFAD 822
            A+NIVAARLGRAEPPLRKEVVEYMSDVDSHLWSMRRSKANFFR+M+VFSG+FAVGKWF D
Sbjct: 717  AMNIVAARLGRAEPPLRKEVVEYMSDVDSHLWSMRRSKANFFRVMSVFSGVFAVGKWFGD 776

Query: 823  ICMWKNPITTVLVHVLYLMLACFPELILPTVFLYMFLIGIWNYRYRPRYPPHMNIKISQA 882
            ICMW+NPITT LVHVL+LML CFPELILPTVFLYMFLIG+WN+RYRPRYPPHMN +ISQA
Sbjct: 777  ICMWRNPITTALVHVLFLMLVCFPELILPTVFLYMFLIGVWNFRYRPRYPPHMNTRISQA 836

Query: 883  EAVHPDELDEEFDTFPTSRSPELVRMRYDRLRSVAGRIQTVVGDVATQGERLQALISWRD 942
            EAVHPDELDEEFDTFPT+RSP+LVRMRYDRLRSVAGRIQTVVGD+A+QGER+QAL+SWRD
Sbjct: 837  EAVHPDELDEEFDTFPTNRSPDLVRMRYDRLRSVAGRIQTVVGDLASQGERIQALLSWRD 896

Query: 943  PRATAIFITFCLVAALVLFLTPFQVIAALAGFWVMRHPRFRRRLPSVPINFFRRLPARTD 1002
            PRAT+IFIT CL++ALVL++TPFQ +A LAGF++MRHPRFR RLP  P+NFFRRLPARTD
Sbjct: 897  PRATSIFITLCLLSALVLYVTPFQAVAGLAGFYIMRHPRFRHRLPCTPVNFFRRLPARTD 956

Query: 1003 SML 1005
             ML
Sbjct: 957  CML 959

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225454164|ref|XP_002271590.1| PREDICTED: multiple C2 and transmembrane domain-containing protein 1-like [Vitis vinifera]

 Score = 1558 bits (4033), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 750/1024 (73%), Positives = 870/1024 (84%), Gaps = 25/1024 (2%)

Query: 1    MRNLKLGVQVVGAHNLLPKDGKGSSSAFVELYFDGQRFRTTIKENDLNPVWNESFYFNIS 60
            M NLKLGV+VV AHNL+PKDG+GS+SAFVEL+FD Q+FRTT KE DLNPVWNESFYFNIS
Sbjct: 1    MSNLKLGVEVVSAHNLMPKDGQGSASAFVELHFDNQKFRTTTKEKDLNPVWNESFYFNIS 60

Query: 61   DASKLHYLTLEAYIYNNIGDTNSRSFLGKVCLTGNSFVPLSDSVVLHYPLEKRGIFSHVR 120
            D + L  L LEA++YN +  TNS+SFLGKV LTG SFVP SD+ VLHYPLEKRGI S V+
Sbjct: 61   DPNNLSNLNLEAWVYNLVKTTNSKSFLGKVRLTGTSFVPYSDAAVLHYPLEKRGILSRVK 120

Query: 121  GELGLKVYITDDPSIKSSTPLPAAETFSTKDPSITHTHA--QPVANPV--------TGDT 170
            GELGLKV++TDDPSI+SS PLPA E+    D   T      Q V N V        + D 
Sbjct: 121  GELGLKVFLTDDPSIRSSNPLPAMESSVLTDSHRTQAQGPVQQVQNIVQNMVQGAFSNDK 180

Query: 171  VESRHTFHHLPNPNHHQHHHQHHPSTTVVNRHVPKYEADEMKSEPQPPKLVHMYSAASSQ 230
             E+RHTFHHLPN N  Q   Q HP+   +++   ++ AD+M++EPQ  ++V M+S ++SQ
Sbjct: 181  AEARHTFHHLPNTNVPQ---QQHPAA--MSQEPGRFGADQMRAEPQGSRIVRMFSGSASQ 235

Query: 231  SADYALKETSPYLGGGKVVGGRVIHADKTASTYDLVERMYFLYVRVVKARELPAMDLTGS 290
              DY LKETSP LGGG++VGGRVI ADK ASTYDLVE+M++L+VRVVKAR+LP  D+TGS
Sbjct: 236  PLDYQLKETSPILGGGQIVGGRVIRADKPASTYDLVEQMHYLFVRVVKARDLPTKDVTGS 295

Query: 291  IDPFVEVKIGNYKGITKHYEKNQNPQWHQVFAFSRDRMQASVLEVVIKDKDLVKDDFVGI 350
            +DPFVEV++GNYKGITKH+EKN+NP+W++VFAF+ DRMQ+SVLEVV+KDKD++KDD VG 
Sbjct: 296  LDPFVEVRVGNYKGITKHFEKNKNPEWNEVFAFAGDRMQSSVLEVVVKDKDMLKDDIVGF 355

Query: 351  VRFDINEVPLRVPPDSPLAPEWYRLEDKKGEKIKGELMLAVWIGTQADEAFSDAWHSDAA 410
            VRFD+++VP RVPPDSPLAPEWYR+ + KGEK  GELMLAVW GTQADEAF DAWHSDAA
Sbjct: 356  VRFDLSDVPTRVPPDSPLAPEWYRIANSKGEKNNGELMLAVWYGTQADEAFPDAWHSDAA 415

Query: 411  TPVDSTPAITAVIRSKVYHSPRLWYVRVNVVEAQDLVPTEKNHFPDVYVKAQIGNQVLKT 470
            +  DS+ A ++ IRSKVYHSPRLWYVRV +VEAQDLV TEK  FPDVYVKAQIGNQ+LKT
Sbjct: 416  SHHDSSAAGSSYIRSKVYHSPRLWYVRVTIVEAQDLVTTEKTRFPDVYVKAQIGNQILKT 475

Query: 471  KICQARTLSAVWNEDLLFVAAEPFEDHLVLTVEDRVGPGKDEIIGRVIIPLSAIEKRA-- 528
            K  QARTL+ +WNEDL+FV AEPFEDHL+L+VEDRVGP KDE IGR IIPLSAIEKRA  
Sbjct: 476  KPTQARTLNPLWNEDLIFVVAEPFEDHLMLSVEDRVGPNKDETIGRTIIPLSAIEKRAEV 535

Query: 529  --DERIIHSRWFNLEKPVAVDVDQ---LKKEKFSSRIHLRVCLDGGYHVLDESTHYSSDL 583
              D+RI  SRW++LEK   +DVDQ    KK+KF+SR+ L + L+GGYHV DESTHYSSDL
Sbjct: 536  RHDDRIDRSRWYHLEKAYVMDVDQSKKDKKDKFASRLRLCLFLEGGYHVHDESTHYSSDL 595

Query: 584  RPTAKQLW--RPSIGILELGILNAVGLHPMKTRDGRGTSDTYCVAKYGHKWVRTRTLVDN 641
            RP+ KQLW   PSIG+LELGILNA GLHPMKTRD +GTSDTYCVAKYG KWVRTRT++++
Sbjct: 596  RPSLKQLWLRTPSIGVLELGILNADGLHPMKTRDQKGTSDTYCVAKYGQKWVRTRTIMNS 655

Query: 642  LSPKYNEQYTWEVFDPATVLTVGVFDNSQLGEKSNGNKDLKIGKVRIRISTLETGRIYTH 701
            LSPKYNEQYTWEV+DPATV+T+GVFDN  +G  SNGN+DLKIGKVRIRISTLETGR+YTH
Sbjct: 656  LSPKYNEQYTWEVYDPATVITIGVFDNCHVG-GSNGNRDLKIGKVRIRISTLETGRVYTH 714

Query: 702  SYPLLVLHPTGVKKMGELHLAIRFSCTSFANMLYLYSRPLLPKMHYVRPFSIMQLDMLRH 761
            +YPLLVLHP GVKKMGELHLAIRFSCTS  N + +YSRPLLPKMHY++PF++MQ DMLRH
Sbjct: 715  TYPLLVLHPNGVKKMGELHLAIRFSCTSLMNTMLIYSRPLLPKMHYIKPFTVMQQDMLRH 774

Query: 762  QAVNIVAARLGRAEPPLRKEVVEYMSDVDSHLWSMRRSKANFFRLMTVFSGLFAVGKWFA 821
            QAVNIVAARL R+EPPLRKEV+EYMSD+DSHLWSMRRSKANFFRLM+VFSGL AVGKWF 
Sbjct: 775  QAVNIVAARLSRSEPPLRKEVIEYMSDMDSHLWSMRRSKANFFRLMSVFSGLIAVGKWFG 834

Query: 822  DICMWKNPITTVLVHVLYLMLACFPELILPTVFLYMFLIGIWNYRYRPRYPPHMNIKISQ 881
            ++C WKNPITT LVHVL++ML CFPELILPTVFLYMF+IG+WNYR RPRYPPHMN KIS 
Sbjct: 835  EVCTWKNPITTGLVHVLFVMLVCFPELILPTVFLYMFMIGLWNYRGRPRYPPHMNTKISY 894

Query: 882  AEAVHPDELDEEFDTFPTSRSPELVRMRYDRLRSVAGRIQTVVGDVATQGERLQALISWR 941
            A+ VHPDELDEEFD+FPTSR  ELVRMRYDRLRSVAGRIQTVVGDVATQGER QAL+SWR
Sbjct: 895  ADNVHPDELDEEFDSFPTSRGSELVRMRYDRLRSVAGRIQTVVGDVATQGERFQALLSWR 954

Query: 942  DPRATAIFITFCLVAALVLFLTPFQVIAALAGFWVMRHPRFRRRLPSVPINFFRRLPART 1001
            DPRAT IF+ FCL+ ALVL++TPFQV+A +AGF+ MRHPRFR RLPS PINFFRRLPA+T
Sbjct: 955  DPRATTIFLVFCLLVALVLYITPFQVLALVAGFYHMRHPRFRGRLPSAPINFFRRLPAKT 1014

Query: 1002 DSML 1005
            DSML
Sbjct: 1015 DSML 1018

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	1005
TAIR|locus:2139727	1011	AT4G11610 "AT4G11610" [Arabido	0.995	0.989	0.742	0.0
TAIR|locus:2127103	1006	AT4G00700 "AT4G00700" [Arabido	0.991	0.990	0.559	4.80000002038e-316
TAIR|locus:2095853	773	AT3G57880 "AT3G57880" [Arabido	0.757	0.984	0.696	2.2e-311
TAIR|locus:2017627	776	AT1G51570 [Arabidopsis thalian	0.758	0.981	0.678	1.9e-305
TAIR|locus:2182305	769	AT5G12970 "AT5G12970" [Arabido	0.754	0.985	0.681	4.5e-304
TAIR|locus:2009492	1029	AT1G22610 "AT1G22610" [Arabido	0.792	0.773	0.603	3.4e-299
TAIR|locus:2162712	1036	AT5G48060 "AT5G48060" [Arabido	0.742	0.720	0.625	1.4e-295
TAIR|locus:2098846	972	AT3G61300 "AT3G61300" [Arabido	0.722	0.746	0.587	4.4e-277
TAIR|locus:2020280	1012	AT1G04150 "AT1G04150" [Arabido	0.748	0.743	0.557	6e-273
TAIR|locus:2019070	1081	QKY "AT1G74720" [Arabidopsis t	0.748	0.695	0.499	4.9e-238

TAIR|locus:2139727 AT4G11610 "AT4G11610" [Arabidopsis thaliana (taxid:3702)]

 Score = 4053 (1431.8 bits), Expect = 0., P = 0.
 Identities = 753/1014 (74%), Positives = 865/1014 (85%)

Query:     1 MRNLKLGVQVVGAHNLLPKDGKGSSSAFVELYFDGQRFRTTIKENDLNPVWNESFYFNIS 60
             M NLKLGV V+GAHNL PKDG+G+S+A+VELYFDGQ+ RTTIK+ DLNPVWNESF+FNIS
Sbjct:     3 MSNLKLGVDVIGAHNLFPKDGQGTSNAYVELYFDGQKHRTTIKDRDLNPVWNESFFFNIS 62

Query:    61 DASKLHYLTLEAYIYNNIGDTNSRSFLGKVCLTGNSFVPLSDSVVLHYPLEKRGIFSHVR 120
             D S+LHYL LEA  Y++   TN RSFLGKV L+G SFVP SD+VVLH+P+E+RGIFS VR
Sbjct:    63 DPSRLHYLNLEAQAYSHNRSTNGRSFLGKVSLSGTSFVPHSDAVVLHFPMERRGIFSRVR 122

Query:   121 GELGLKVYITDDPSIKSSTPLPAAETFSTKDPS------ITH-THAQPVANPVTGDTVES 173
             GELGLKVYITD+ S+KSS    + +     DP+      + H +  + V   +     E 
Sbjct:   123 GELGLKVYITDEASLKSSAA--SNDHPDNLDPALPRAMNVEHRSDKRHVFYNLPNSAQEH 180

Query:   174 RHTFXXXXXXXXXXXXXXXXXSTTVVNRHVPKYEADEMKSEP-QPPKLVHMXXXXXXXXX 232
             +H                   +    + +VPK++ DEM+SEP +P KLVH          
Sbjct:   181 QHQHPQGPNQSSSLAAEQDNHNEHH-HHYVPKHQVDEMRSEPARPSKLVHAHSIASAQPA 239

Query:   233 XXXLKETSPYLGGGKVVGGRVIHADKTA-STYDLVERMYFLYVRVVKARELPAMDLTGSI 291
                LKETSP+LGGG+VVGGRVIH DKTA STYDLVERMYFLYVRVVKARELP MD+TGS+
Sbjct:   240 DFALKETSPHLGGGRVVGGRVIHKDKTATSTYDLVERMYFLYVRVVKARELPIMDITGSV 299

Query:   292 DPFVEVKIGNYKGITKHYEKNQNPQWHQVFAFSRDRMQASVLEXXXXXXXXXXXXXXGIV 351
             DPFVEV++GNYKGIT+H+EK Q+P+W+QVFAF+++RMQASVLE              G V
Sbjct:   300 DPFVEVRVGNYKGITRHFEKRQHPEWNQVFAFAKERMQASVLEVVVKDKDLLKDDYVGFV 359

Query:   352 RFDINEVPLRVPPDSPLAPEWYRLEDKKGEKIKGELMLAVWIGTQADEAFSDAWHSDAAT 411
             RFDIN+VPLRVPPDSPLAP+WYRLEDKKGEKIKGELMLAVWIGTQADEAFSDAWHSDAA 
Sbjct:   360 RFDINDVPLRVPPDSPLAPQWYRLEDKKGEKIKGELMLAVWIGTQADEAFSDAWHSDAAM 419

Query:   412 PVDSTPAITAVIRSKVYHSPRLWYVRVNVVEAQDLVPTEKNHFPDVYVKAQIGNQVLKTK 471
             PVD +PAI+AV+RSKVYH+PRLWYVRVNV+EAQDL+PT+K  FPDVYVKAQ+GNQV+KT+
Sbjct:   420 PVDCSPAISAVLRSKVYHAPRLWYVRVNVIEAQDLIPTDKTRFPDVYVKAQLGNQVMKTR 479

Query:   472 ICQARTLSAVWNEDLLFVAAEPFEDHLVLTVEDRVGPGKDEIIGRVIIPLSAIEKRADER 531
              CQARTL AVWNED LFV AEPFEDHLVLTVEDRV PGKDEI+GR  IPL+ +EKRAD+ 
Sbjct:   480 PCQARTLGAVWNEDFLFVVAEPFEDHLVLTVEDRVAPGKDEIVGRTYIPLNTVEKRADDH 539

Query:   532 IIHSRWFNLEKPVAVDVDQLKKEKFSSRIHLRVCLDGGYHVLDESTHYSSDLRPTAKQLW 591
             +IH+RW+NLE+PV VDVDQLK+EKFS RIHLRVCL+GGYHVLDESTHYSSDLRP+A+ LW
Sbjct:   540 MIHARWYNLERPVIVDVDQLKREKFSMRIHLRVCLEGGYHVLDESTHYSSDLRPSARPLW 599

Query:   592 RPSIGILELGILNAVGLHPMKTRDGRGTSDTYCVAKYGHKWVRTRTLVDNLSPKYNEQYT 651
             R  IG+LELGILNAVGLHPMKTR+GRGTSDT+CV KYG KWVRTRT+VDNL PKYNEQYT
Sbjct:   600 RQPIGVLELGILNAVGLHPMKTREGRGTSDTFCVGKYGQKWVRTRTMVDNLCPKYNEQYT 659

Query:   652 WEVFDPATVLTVGVFDNSQLGEKSNGNKDLKIGKVRIRISTLETGRIYTHSYPLLVLHPT 711
             WEVFDPATVLTVGVFDN QLGEK  GN+D+KIGK+RIR+STLETGRIYTHSYPLLVLHPT
Sbjct:   660 WEVFDPATVLTVGVFDNGQLGEK--GNRDVKIGKIRIRLSTLETGRIYTHSYPLLVLHPT 717

Query:   712 GVKKMGELHLAIRFSCTSFANMLYLYSRPLLPKMHYVRPFSIMQLDMLRHQAVNIVAARL 771
             GVKKMGELH+A+RF+C SFANMLY YS+PLLPKMHYVRPFS+MQ DMLRHQAVNIVAARL
Sbjct:   718 GVKKMGELHMAVRFTCISFANMLYQYSKPLLPKMHYVRPFSVMQQDMLRHQAVNIVAARL 777

Query:   772 GRAEPPLRKEVVEYMSDVDSHLWSMRRSKANFFRLMTVFSGLFAVGKWFADICMWKNPIT 831
             GRAEPPLRKE++E+MSD DSHLWSMR+SKANFFR+MTVFSG+ AVGKWF+DIC W+NPIT
Sbjct:   778 GRAEPPLRKEIIEFMSDTDSHLWSMRKSKANFFRMMTVFSGVIAVGKWFSDICSWRNPIT 837

Query:   832 TVLVHVLYLMLACFPELILPTVFLYMFLIGIWNYRYRPRYPPHMNIKISQAEAVHPDELD 891
             TVLVHVL+LML C PELILPT+FLYMFLIG+WNYR+RPRYPPHMN KISQAEAVHPDELD
Sbjct:   838 TVLVHVLFLMLVCLPELILPTMFLYMFLIGLWNYRFRPRYPPHMNTKISQAEAVHPDELD 897

Query:   892 EEFDTFPTSRSPELVRMRYDRLRSVAGRIQTVVGDVATQGERLQALISWRDPRATAIFIT 951
             EEFDTFPT+R+P++VR+RYDRLRSVAGRIQTV+GD+ATQGER QAL+SWRDPRATAIF+ 
Sbjct:   898 EEFDTFPTTRNPDMVRLRYDRLRSVAGRIQTVIGDLATQGERFQALLSWRDPRATAIFVI 957

Query:   952 FCLVAALVLFLTPFQVIAALAGFWVMRHPRFRRRLPSVPINFFRRLPARTDSML 1005
              C +AA+V F+TP Q++ ALAGF+ MRHPRFR RLPSVP+NFFRRLPARTDSML
Sbjct:   958 LCFIAAIVFFITPIQIVVALAGFFTMRHPRFRHRLPSVPVNFFRRLPARTDSML 1011

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2127103 AT4G00700 "AT4G00700" [Arabidopsis thaliana (taxid:3702)]

 Score = 3031 (1072.0 bits), Expect = 4.8e-316, P = 4.8e-316
 Identities = 568/1015 (55%), Positives = 747/1015 (73%)

Query:     1 MRNLKLGVQVVGAHNLLPKDGKGSSSAFVELYFDGQRFRTTIKENDLNPVWNESFYFNIS 60
             M N+KLGV+V+ A  LL +D   S S FVEL FD Q FR T K ND NPVW+E FYF +S
Sbjct:     1 MSNIKLGVEVISAQGLLQRDKHNSCSPFVELKFDNQIFRATTKHNDPNPVWHECFYFVVS 60

Query:    61 DASKLHYLTLEAYIYNNIGDTNSRSFLGKVCLTGNSFVPLSDSVVLHYPLEKRGIFSHVR 120
             D S L   TLEA++Y+   + +++ FLGKV + G SFVP S++   +YPLEKR +FS  R
Sbjct:    61 DPSVLSTRTLEAHVYSYQNEFDAKPFLGKVRVNGTSFVPRSEAAPFNYPLEKRSVFSRAR 120

Query:   121 GELGLKVYITDDPSIKSSTPLPAAETFSTKDPSITHTHAQPVANPVTGDTVESRHTFXXX 180
             GEL L+V+ITDDPS+  S P P  E+     PS    H + +   +T D      +    
Sbjct:   121 GELCLRVFITDDPSVTPSVPTPVPESPQAYSPSPRKEHVKSL---ITADA-----SMATD 172

Query:   181 XXXXXXXXXXXXXXSTTVVNRH-VPKYEADEMKSEPQPPKLVHMXXXXXXXXXX---XXL 236
                           S  +V +  +  Y   EM++ P PP++V +               +
Sbjct:   173 ERRELKPKTRTFHNSAPLVKQQPMMNYGIHEMRAAPMPPRVVQVNGPGPSLHQLPPDFSV 232

Query:   237 KETSPYLGGGKVVGGRVIHADK--TASTYDLVERMYFLYVRVVKARELPAMDLTGSIDPF 294
             KETSP LGGG++VGGRV+   +  T+ TYDLVE M FLYVRVVKAR+LP  DLTGS+DP+
Sbjct:   233 KETSPLLGGGRIVGGRVVRGTERPTSGTYDLVEEMKFLYVRVVKARDLPNKDLTGSLDPY 292

Query:   295 VEVKIGNYKGITKHYEKNQNPQWHQVFAFSRDRMQASVLEXXXXXXXXXXXXXXGIVRFD 354
             V VKIGN+KG+T H+ KN +P+W+QVFAF++D +Q++ LE              GIV+FD
Sbjct:   293 VVVKIGNFKGVTTHFNKNTDPEWNQVFAFAKDNLQSNFLEVMVKDKDILLDDFVGIVKFD 352

Query:   355 INEVPLRVPPDSPLAPEWYRLEDKKGEKIKGELMLAVWIGTQADEAFSDAWHSDAATPVD 414
             + EV  RVPPDSPLAP+WYRLE+K+GEK   E+MLAVW GTQADEAF DA  SD+    D
Sbjct:   353 LREVQSRVPPDSPLAPQWYRLENKRGEKKNYEIMLAVWSGTQADEAFGDATFSDSLVDSD 412

Query:   415 STPAITAVIRSKVYHSPRLWYVRVNVVEAQD-LVPTEKNHFPDVYVKAQIGNQVLKTKIC 473
             S+  I+A +RSKVYHSPRLWY+RV ++EAQD ++ ++K+  P+V+V+ ++GNQ+L+TK  
Sbjct:   413 SSNIISANLRSKVYHSPRLWYLRVQILEAQDVIIVSDKSRVPEVFVRVKVGNQMLRTKFP 472

Query:   474 QARTLSAVWNEDLLFVAAEPFEDHLVLTVEDRVGPGKDEIIGRVIIPLSAIEKRADERII 533
             Q R+ +  W ++  FV AEPFED+LVL+VED   P +DE +G+ +I ++ IEKR D++  
Sbjct:   473 Q-RSNNPKWGDEFTFVVAEPFEDNLVLSVEDHTAPNRDEPVGKAVILMNDIEKRIDDKPF 531

Query:   534 HSRWFNLEKPV--AVDVDQLKKEKFSSRIHLRVCLDGGYHVLDESTHYSSDLRPTAKQLW 591
             H RW +LE  +  A+DVD+ KK KF++R+  +  LDGGYHV DES + SSDLRP++++LW
Sbjct:   532 HDRWVHLEDSISDAMDVDKAKKVKFATRLRYKAVLDGGYHVFDESMYNSSDLRPSSRKLW 591

Query:   592 RPSIGILELGILNAVGLHPMKTRDGRGTSDTYCVAKYGHKWVRTRTLVDNLSPKYNEQYT 651
             +P+IG+LELGILNA   H MKTR+G+GTSDTY VAKYGHKWVR+RT++++++PKYNEQYT
Sbjct:   592 KPAIGVLELGILNANVFHSMKTREGKGTSDTYVVAKYGHKWVRSRTVINSMNPKYNEQYT 651

Query:   652 WEVFDPATVLTVGVFDNSQLGEKSNGNK-DLKIGKVRIRISTLETGRIYTHSYPLLVLHP 710
             WEVFDPATVLT+ VFDN+       GNK D  IGKVRIR+STL+TGR+YTH+YPLLVL P
Sbjct:   652 WEVFDPATVLTICVFDNAHFAAGDGGNKRDQPIGKVRIRLSTLQTGRVYTHAYPLLVLQP 711

Query:   711 TGVKKMGELHLAIRFSCTSFANMLYLYSRPLLPKMHYVRPFSIMQLDMLRHQAVNIVAAR 770
             TG+KK GELHLA+RF+CTS ++ML  Y++PLLPKMHY+ P S  Q + L+ QA+NI+  R
Sbjct:   712 TGLKKRGELHLAVRFTCTSVSSMLMKYTKPLLPKMHYILPLSTNQQEALKMQAINIIIVR 771

Query:   771 LGRAEPPLRKEVVEYMSDVDSHLWSMRRSKANFFRLMTVFSGLFAVGKWFADICMWKNPI 830
             LGR+EPPLR+EVV+Y++D  S L+SMRRSKANF R  TVFSG  +V KW   +C WK P+
Sbjct:   772 LGRSEPPLRREVVDYLTDWKSQLFSMRRSKANFNRFTTVFSGALSVWKWMEQVCTWKTPV 831

Query:   831 TTVLVHVLYLMLACFPELILPTVFLYMFLIGIWNYRYRPRYPPHMNIKISQAEAVHPDEL 890
             TT LVHVLY ML  FPE+ILPTVFLYM +IG+WNYR++PR+PPHM+ K+S A+ V+ DEL
Sbjct:   832 TTALVHVLYTMLVTFPEMILPTVFLYMAVIGMWNYRFKPRFPPHMDAKLSYADNVNSDEL 891

Query:   891 DEEFDTFPTSRSPELVRMRYDRLRSVAGRIQTVVGDVATQGERLQALISWRDPRATAIFI 950
             DEEFDTFPT R+P++V+MRYDRLRSVAG++Q+V GD+A QGER+QAL+SWRDPRATAIF+
Sbjct:   892 DEEFDTFPTVRAPDIVKMRYDRLRSVAGKVQSVAGDIAAQGERVQALLSWRDPRATAIFV 951

Query:   951 TFCLVAALVLFLTPFQVIAALAGFWVMRHPRFRRRLPSVPINFFRRLPARTDSML 1005
             TFC + A+ L++TPF+++A L+G++ MRHP+ R R+PS P+NFFRRLPA TDSML
Sbjct:   952 TFCFIIAMALYITPFKLVALLSGYYFMRHPKLRHRIPSAPVNFFRRLPAMTDSML 1006

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

TAIR|locus:2095853 AT3G57880 "AT3G57880" [Arabidopsis thaliana (taxid:3702)]

 Score = 2987 (1056.5 bits), Expect = 2.2e-311, P = 2.2e-311
 Identities = 538/772 (69%), Positives = 657/772 (85%)

Query:   236 LKETSPYLGGGKVVGGRVIHADKTASTYDLVERMYFLYVRVVKARELPAMDLTGSIDPFV 295
             LKET P+LGGGK+ G      DK  STYDLVE+M +LYVRVVKA+ELP  D+TGS DP+V
Sbjct:    11 LKETRPHLGGGKLSG------DKLTSTYDLVEQMQYLYVRVVKAKELPGKDMTGSCDPYV 64

Query:   296 EVKIGNYKGITKHYEKNQNPQWHQVFAFSRDRMQASVLEXXXXXXXXXXXXXXGIVRFDI 355
             EVK+GNYKG T+H+EK  NP+W+QVFAFS+DR+QAS LE              G V FD+
Sbjct:    65 EVKLGNYKGTTRHFEKKSNPEWNQVFAFSKDRIQASFLEATVKDKDFVKDDLIGRVVFDL 124

Query:   356 NEVPLRVPPDSPLAPEWYRLEDKKGEKIKGELMLAVWIGTQADEAFSDAWHSDAATPVDS 415
             NEVP RVPPDSPLAP+WYRLED+KG+K+KGELMLAVW GTQADEAF +AWHSDAAT V  
Sbjct:   125 NEVPKRVPPDSPLAPQWYRLEDRKGDKVKGELMLAVWFGTQADEAFPEAWHSDAAT-VSG 183

Query:   416 TPAITAVIRSKVYHSPRLWYVRVNVVEAQDLVPTEKNHFPDVYVKAQIGNQVLKTKICQA 475
             T A+ A IRSKVY SP+LWY+RVNV+EAQDL+PT+K  +P+VYVKA +GNQ L+T++ Q+
Sbjct:   184 TDAL-ANIRSKVYLSPKLWYLRVNVIEAQDLIPTDKQRYPEVYVKAIVGNQALRTRVSQS 242

Query:   476 RTLSAVWNEDLLFVAAEPFEDHLVLTVEDRVGPGKDEIIGRVIIPLSAIEKRADERIIHS 535
             RT++ +WNEDL+FVAAEPFE+ L+L+VEDRV P KDE++GR  IPL  +++R D + ++S
Sbjct:   243 RTINPMWNEDLMFVAAEPFEEPLILSVEDRVAPNKDEVLGRCAIPLQYLDRRFDHKPVNS 302

Query:   536 RWFNLEKPVAVDVDQLKKEKFSSRIHLRVCLDGGYHVLDESTHYSSDLRPTAKQLWRPSI 595
             RW+NLEK + VD ++ K+ KF+SRIH+R+CL+GGYHVLDESTHYSSDLRPTAKQLW+P+I
Sbjct:   303 RWYNLEKHIMVDGEK-KETKFASRIHMRICLEGGYHVLDESTHYSSDLRPTAKQLWKPNI 361

Query:   596 GILELGILNAVGLHPMKTRDGRGTSDTYCVAKYGHKWVRTRTLVDNLSPKYNEQYTWEVF 655
             G+LELGILNA GL PMKT+DGRGT+D YCVAKYG KW+RTRT++D+ +P++NEQYTWEVF
Sbjct:   362 GVLELGILNATGLMPMKTKDGRGTTDAYCVAKYGQKWIRTRTIIDSFTPRWNEQYTWEVF 421

Query:   656 DPATVLTVGVFDNSQL--GEKSNGNKDLKIGKVRIRISTLETGRIYTHSYPLLVLHPTGV 713
             DP TV+TVGVFDN  L  GEK  G KD +IGKVRIR+STLET R+YTHSYPLLVLHP GV
Sbjct:   422 DPCTVVTVGVFDNCHLHGGEKIGGAKDSRIGKVRIRLSTLETDRVYTHSYPLLVLHPNGV 481

Query:   714 KKMGELHLAIRFSCTSFANMLYLYSRPLLPKMHYVRPFSIMQLDMLRHQAVNIVAARLGR 773
             KKMGE+HLA+RF+C+S  NM+Y+YS+PLLPKMHY+ P ++ QLD LRHQA  IV+ RL R
Sbjct:   482 KKMGEIHLAVRFTCSSLLNMMYMYSQPLLPKMHYIHPLTVSQLDNLRHQATQIVSMRLTR 541

Query:   774 AEPPLRKEVVEYMSDVDSHLWSMRRSKANFFRLMTVFSGLFAVGKWFADICMWKNPITTV 833
             AEPPLRKEVVEYM DV SH+WSMRRSKANFFR+M V SGL AVGKWF  IC WKNPITTV
Sbjct:   542 AEPPLRKEVVEYMLDVGSHMWSMRRSKANFFRIMGVLSGLIAVGKWFEQICNWKNPITTV 601

Query:   834 LVHVLYLMLACFPELILPTVFLYMFLIGIWNYRYRPRYPPHMNIKISQAEAVHPDELDEE 893
             L+H+L+++L  +PELILPT+FLY+FLIGIW YR+RPR+PPHM+ ++S A++ HPDELDEE
Sbjct:   602 LIHLLFIILVLYPELILPTIFLYLFLIGIWYYRWRPRHPPHMDTRLSHADSAHPDELDEE 661

Query:   894 FDTFPTSRSPELVRMRYDRLRSVAGRIQTVVGDVATQGERLQALISWRDPRATAIFITFC 953
             FDTFPTSR  ++VRMRYDRLRS+AGRIQTVVGD+ATQGERLQ+L+SWRDPRATA+F+ FC
Sbjct:   662 FDTFPTSRPSDIVRMRYDRLRSIAGRIQTVVGDLATQGERLQSLLSWRDPRATALFVLFC 721

Query:   954 LVAALVLFLTPFQVIAALAGFWVMRHPRFRRRLPSVPINFFRRLPARTDSML 1005
             L+AA++L++TPFQV+A   G + +RHPRFR +LPSVP+NFFRRLPARTD ML
Sbjct:   722 LIAAVILYVTPFQVVALCIGIYALRHPRFRYKLPSVPLNFFRRLPARTDCML 773

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0005618 "cell wall" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2017627 AT1G51570 [Arabidopsis thaliana (taxid:3702)]

 Score = 2931 (1036.8 bits), Expect = 1.9e-305, P = 1.9e-305
 Identities = 525/774 (67%), Positives = 653/774 (84%)

Query:   236 LKETSPYLGGGKVVGGRVIHADKTASTYDLVERMYFLYVRVVKARELPAMDLTGSIDPFV 295
             LKET P+LGGGKV G      DK  +TYDLVE+M +LYVRVVKA+ELP  DLTGS DP+V
Sbjct:    11 LKETKPHLGGGKVTG------DKLTTTYDLVEQMQYLYVRVVKAKELPGKDLTGSCDPYV 64

Query:   296 EVKIGNYKGITKHYEKNQNPQWHQVFAFSRDRMQASVLEXXXXXXXXXXXXXXGIVRFDI 355
             EVK+GNY+G T+H+EK  NP+W+QVFAFS+DR+QAS LE              G V FD+
Sbjct:    65 EVKLGNYRGTTRHFEKKSNPEWNQVFAFSKDRVQASYLEATVKDKDLVKDDLIGRVVFDL 124

Query:   356 NEVPLRVPPDSPLAPEWYRLEDKKGEKIKGELMLAVWIGTQADEAFSDAWHSDAATPVDS 415
             NE+P RVPPDSPLAP+WYRLED KG+K+KGELMLAVW GTQADEAF +AWHSDAAT V  
Sbjct:   125 NEIPKRVPPDSPLAPQWYRLEDGKGQKVKGELMLAVWFGTQADEAFPEAWHSDAAT-VSG 183

Query:   416 TPAITAVIRSKVYHSPRLWYVRVNVVEAQDLVPTEKNHFPDVYVKAQIGNQVLKTKICQA 475
             T A+ A IRSKVY SP+LWY+RVNV+EAQDL+P++K  +P+V+VK  +GNQ L+T++ Q+
Sbjct:   184 TDAL-ANIRSKVYLSPKLWYLRVNVIEAQDLIPSDKGRYPEVFVKVIMGNQALRTRVSQS 242

Query:   476 RTLSAVWNEDLLFVAAEPFEDHLVLTVEDRVGPGKDEIIGRVIIPLSAIEKRADERIIHS 535
             R+++ +WNEDL+FV AEPFE+ L+L+VEDRV P KDE++GR  +PL  ++KR D R ++S
Sbjct:   243 RSINPMWNEDLMFVVAEPFEEPLILSVEDRVAPNKDEVLGRCAVPLQYLDKRFDYRPVNS 302

Query:   536 RWFNLEKPVAVDVDQLKKEKFSSRIHLRVCLDGGYHVLDESTHYSSDLRPTAKQLWRPSI 595
             RWFNLEK V ++  + K+ KF+S+IH+R+CL+GGYHVLDESTHYSSDLRPTAKQLW+P+I
Sbjct:   303 RWFNLEKHVIMEGGEKKEIKFASKIHMRICLEGGYHVLDESTHYSSDLRPTAKQLWKPNI 362

Query:   596 GILELGILNAVGLHPMKTRDG-RGTSDTYCVAKYGHKWVRTRTLVDNLSPKYNEQYTWEV 654
             G+LELG+LNA GL PMK ++G RGT+D YCVAKYG KW+RTRT++D+ +P++NEQYTWEV
Sbjct:   363 GVLELGVLNATGLMPMKAKEGGRGTTDAYCVAKYGQKWIRTRTIIDSFTPRWNEQYTWEV 422

Query:   655 FDPATVLTVGVFDNSQL--GEKSNGN-KDLKIGKVRIRISTLETGRIYTHSYPLLVLHPT 711
             FDP TV+TVGVFDN  L  G+K+NG  KD +IGKVRIR+STLE  R+YTHSYPLLVLHP+
Sbjct:   423 FDPCTVVTVGVFDNCHLHGGDKNNGGGKDSRIGKVRIRLSTLEADRVYTHSYPLLVLHPS 482

Query:   712 GVKKMGELHLAIRFSCTSFANMLYLYSRPLLPKMHYVRPFSIMQLDMLRHQAVNIVAARL 771
             GVKKMGE+HLA+RF+C+S  NM+Y+YS PLLPKMHY+ P ++ QLD LRHQA  IV+ RL
Sbjct:   483 GVKKMGEIHLAVRFTCSSLLNMMYMYSMPLLPKMHYLHPLTVSQLDNLRHQATQIVSTRL 542

Query:   772 GRAEPPLRKEVVEYMSDVDSHLWSMRRSKANFFRLMTVFSGLFAVGKWFADICMWKNPIT 831
              RAEPPLRKEVVEYM DV SH+WSMRRSKANFFR+M V SG+ AVGKWF  IC+WKNPIT
Sbjct:   543 TRAEPPLRKEVVEYMLDVGSHMWSMRRSKANFFRIMGVLSGIIAVGKWFEQICVWKNPIT 602

Query:   832 TVLVHVLYLMLACFPELILPTVFLYMFLIGIWNYRYRPRYPPHMNIKISQAEAVHPDELD 891
             TVL+H+L+++L  +PELILPT+FLY+FLIG+W YR+RPR+PPHM+ ++S A++ HPDELD
Sbjct:   603 TVLIHILFIILVIYPELILPTIFLYLFLIGVWYYRWRPRHPPHMDTRLSHADSAHPDELD 662

Query:   892 EEFDTFPTSRSPELVRMRYDRLRSVAGRIQTVVGDVATQGERLQALISWRDPRATAIFIT 951
             EEFDTFPTSR  ++VRMRYDRLRS+AGRIQTVVGD+ATQGER Q+L+SWRDPRATA+F+ 
Sbjct:   663 EEFDTFPTSRPSDIVRMRYDRLRSIAGRIQTVVGDLATQGERFQSLLSWRDPRATALFVL 722

Query:   952 FCLVAALVLFLTPFQVIAALAGFWVMRHPRFRRRLPSVPINFFRRLPARTDSML 1005
             FCL+AA++L++TPFQV+A   G +V+RHPR R +LPSVP+NFFRRLPARTD ML
Sbjct:   723 FCLIAAVILYITPFQVVAFAIGLYVLRHPRLRYKLPSVPLNFFRRLPARTDCML 776

GO:0005634 "nucleus" evidence=ISM

GO:0005618 "cell wall" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0010075 "regulation of meristem growth" evidence=RCA

TAIR|locus:2182305 AT5G12970 "AT5G12970" [Arabidopsis thaliana (taxid:3702)]

 Score = 2918 (1032.2 bits), Expect = 4.5e-304, P = 4.5e-304
 Identities = 525/770 (68%), Positives = 644/770 (83%)

Query:   236 LKETSPYLGGGKVVGGRVIHADKTASTYDLVERMYFLYVRVVKARELPAMDLTGSIDPFV 295
             LKETSP +G G V G      DK  STYDLVE+M++LYVRVVKA+ELP  D+TGS DP+V
Sbjct:    12 LKETSPKIGAGSVTG------DKLCSTYDLVEQMHYLYVRVVKAKELPGKDVTGSCDPYV 65

Query:   296 EVKIGNYKGITKHYEKNQNPQWHQVFAFSRDRMQASVLEXXXXXXXXXXXXXXGIVRFDI 355
             EVK+GNY+G+TKH+EK  NP+W QVFAFS++R+QAS+LE              G + FD+
Sbjct:    66 EVKLGNYRGMTKHFEKRSNPEWKQVFAFSKERIQASILEVVVKDKDVVLDDLIGRIMFDL 125

Query:   356 NEVPLRVPPDSPLAPEWYRLEDKKGEKIKGELMLAVWIGTQADEAFSDAWHSDAATPVDS 415
             NE+P RVPPDSPLAP+WYRLED+ G K+KGELMLAVW+GTQADEAFSDAWHSDAAT    
Sbjct:   126 NEIPKRVPPDSPLAPQWYRLEDRHGRKVKGELMLAVWMGTQADEAFSDAWHSDAATV--- 182

Query:   416 TPAITAVIRSKVYHSPRLWYVRVNVVEAQDLVPTEKNHFPDVYVKAQIGNQVLKTKICQA 475
              P     IRSKVY SP+LWYVRVNV+EAQDL+P +K  FP+VYVKA +GNQ L+T+I Q 
Sbjct:   183 GPEGVTHIRSKVYLSPKLWYVRVNVIEAQDLIPHDKTKFPEVYVKAMLGNQTLRTRISQT 242

Query:   476 RTLSAVWNEDLLFVAAEPFEDHLVLTVEDRVGPGKDEIIGRVIIPLSAIEKRADERIIHS 535
             +TL+ +WNEDL+FV AEPFE+ L+L VEDRV P KDE +GR  IPL  +++R D R ++S
Sbjct:   243 KTLNPMWNEDLMFVVAEPFEEALILAVEDRVAPNKDETLGRCAIPLQNVQRRLDHRPLNS 302

Query:   536 RWFNLEKPVAVDVDQLKKEKFSSRIHLRVCLDGGYHVLDESTHYSSDLRPTAKQLWRPSI 595
             RWFNLEK + V+ +Q K+ KF+SRIHLR+ L+GGYHVLDESTHYSSDLRPTAKQLW+PSI
Sbjct:   303 RWFNLEKHIMVEGEQ-KEIKFASRIHLRIFLEGGYHVLDESTHYSSDLRPTAKQLWKPSI 361

Query:   596 GILELGILNAVGLHPMKTRDGRGTSDTYCVAKYGHKWVRTRTLVDNLSPKYNEQYTWEVF 655
             G+LE+GI++A GL PMK++DG+GT+D YCVAKYG KW+RTRT+VD+ +PK+NEQYTWEVF
Sbjct:   362 GLLEVGIISAHGLMPMKSKDGKGTTDAYCVAKYGQKWIRTRTIVDSFTPKWNEQYTWEVF 421

Query:   656 DPATVLTVGVFDNSQLGEKSNGNKDLKIGKVRIRISTLETGRIYTHSYPLLVLHPTGVKK 715
             D  TV+T G FDN  +       KDL+IGKVRIR+STLE  RIYTHSYPLLV HP+G+KK
Sbjct:   422 DTCTVITFGAFDNGHI--PGGSGKDLRIGKVRIRLSTLEADRIYTHSYPLLVFHPSGIKK 479

Query:   716 MGELHLAIRFSCTSFANMLYLYSRPLLPKMHYVRPFSIMQLDMLRHQAVNIVAARLGRAE 775
              GE+ LA+RF+C S  NML++YS+PLLPKMHY+ P S++QLD LRHQA+NIV+ARL RAE
Sbjct:   480 TGEIQLAVRFTCLSLINMLHMYSQPLLPKMHYIHPLSVLQLDSLRHQAMNIVSARLNRAE 539

Query:   776 PPLRKEVVEYMSDVDSHLWSMRRSKANFFRLMTVFSGLFAVGKWFADICMWKNPITTVLV 835
             PPLRKE+VEYM DVDSH+WSMRRSKANFFR+M V SGL AVGKWF  IC W+NPITT+L+
Sbjct:   540 PPLRKEIVEYMLDVDSHMWSMRRSKANFFRIMNVLSGLIAVGKWFDQICNWRNPITTILI 599

Query:   836 HVLYLMLACFPELILPTVFLYMFLIGIWNYRYRPRYPPHMNIKISQAEAVHPDELDEEFD 895
             HVL+++L  +PELILPTVFLY+FLIGIWN+R+RPR+PPHM+ ++S A+AVHPDELDEEFD
Sbjct:   600 HVLFIILVLYPELILPTVFLYLFLIGIWNFRWRPRHPPHMDTRLSHADAVHPDELDEEFD 659

Query:   896 TFPTSRSPELVRMRYDRLRSVAGRIQTVVGDVATQGERLQALISWRDPRATAIFITFCLV 955
             TFPTSRS E+VRMRYDRLRS+ GR+QTV+GD+ATQGER  +L+SWRDPRAT +F+ FCL+
Sbjct:   660 TFPTSRSSEIVRMRYDRLRSIGGRVQTVIGDLATQGERFLSLLSWRDPRATTLFVLFCLI 719

Query:   956 AALVLFLTPFQVIAALAGFWVMRHPRFRRRLPSVPINFFRRLPARTDSML 1005
             AA+VL++TPFQV+A LAG +V+RHPRFR +LPSVP+N FRRLPAR+DS+L
Sbjct:   720 AAIVLYVTPFQVVALLAGIYVLRHPRFRHKLPSVPLNLFRRLPARSDSLL 769

GO:0003674 "molecular_function" evidence=ND

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2009492 AT1G22610 "AT1G22610" [Arabidopsis thaliana (taxid:3702)]

 Score = 2597 (919.2 bits), Expect = 3.4e-299, Sum P(2) = 3.4e-299
 Identities = 488/809 (60%), Positives = 632/809 (78%)

Query:   204 PKYEADEMKSEPQPPKLVHMXXXXXXXXXXXXLKETSPYLGGGKVVGGRVIHA--DKTAS 261
             P++ +D M++   P   V              L ETSP L   ++       +  DKT+S
Sbjct:   227 PEFRSDFMRAPGPPTGAVMQMQPPRQQNPEFQLIETSPPLAA-RMRQSYYYRSSGDKTSS 285

Query:   262 TYDLVERMYFLYVRVVKARELPAMDLTGSIDPFVEVKIGNYKGITKHYEKNQNPQWHQVF 321
             TYDLVE+M++LYV VVKAR+LP MD++GS+DP+VEVK+GNYKG+TKH EKN NP W Q+F
Sbjct:   286 TYDLVEQMHYLYVSVVKARDLPVMDVSGSLDPYVEVKLGNYKGLTKHLEKNSNPIWKQIF 345

Query:   322 AFSRDRMQASVLEXXXXXXXXXXXXXX-GIVRFDINEVPLRVPPDSPLAPEWYRLEDKKG 380
             AFS++R+Q+++LE               G V  D+ EVPLRVPPDSPLAP+WYRLEDKKG
Sbjct:   346 AFSKERLQSNLLEVTVKDKDLLTKDDFVGRVHIDLTEVPLRVPPDSPLAPQWYRLEDKKG 405

Query:   381 EKI-KGELMLAVWIGTQADEAFSDAWHSDAATPVDSTPAITAVIRSKVYHSPRLWYVRVN 439
              K  +GE+MLAVW+GTQADE+F DAWHSDA     S  + T   RSKVY SP+L+Y+R++
Sbjct:   406 MKTNRGEIMLAVWMGTQADESFPDAWHSDAHRVSHSNLSNT---RSKVYFSPKLYYLRIH 462

Query:   440 VVEAQDLVPTEKNHFPDVYVKAQIGNQVLKTKICQARTLSAVWNEDLLFVAAEPFEDHLV 499
             V+EAQDLVP++K   PD  VK Q GNQ+  T+  Q RT++  W+E+L+FV +EPFED ++
Sbjct:   463 VMEAQDLVPSDKGRVPDAIVKIQAGNQMRATRTPQMRTMNPQWHEELMFVVSEPFEDMVI 522

Query:   500 LTVEDRVGPGKDEIIGRVIIPLSAIEKRADE-RIIHSRWFNLEK-PVAVDVDQLK-KEKF 556
             ++V+DR+GPGKDEI+GRV IP+  +  R +  ++   RWFNL++  ++++ +  K KEKF
Sbjct:   523 VSVDDRIGPGKDEILGRVFIPVRDVPVRQEVGKMPDPRWFNLQRHSMSMEEENEKRKEKF 582

Query:   557 SSRIHLRVCLDGGYHVLDESTHYSSDLRPTAKQLWRPSIGILELGILNAVGLHPMKTRDG 616
             SS+I LRVC++ GYHVLDESTH+SSDL+P++K L +PSIGILELGIL+A  L PMK +DG
Sbjct:   583 SSKILLRVCIEAGYHVLDESTHFSSDLQPSSKHLRKPSIGILELGILSARNLMPMKGKDG 642

Query:   617 RGTSDTYCVAKYGHKWVRTRTLVDNLSPKYNEQYTWEVFDPATVLTVGVFDNSQLGEKSN 676
             R T D YCVAKYG+KWVRTRTL+D L+PK+NEQYTWEV DP TV+T+GVFDNS + +  +
Sbjct:   643 RMT-DPYCVAKYGNKWVRTRTLLDALAPKWNEQYTWEVHDPCTVITIGVFDNSHVNDGGD 701

Query:   677 GNKDLKIGKVRIRISTLETGRIYTHSYPLLVLHPTGVKKMGELHLAIRFSCTSFANMLYL 736
               KD +IGKVR+R+STLET R+YTH YPLLVL P G+KK GEL LA+R++CT F NM+  
Sbjct:   702 F-KDQRIGKVRVRLSTLETDRVYTHFYPLLVLTPGGLKKNGELQLALRYTCTGFVNMMAQ 760

Query:   737 YSRPLLPKMHYVRPFSIMQLDMLRHQAVNIVAARLGRAEPPLRKEVVEYMSDVDSHLWSM 796
             Y RPLLPKMHY++P  +  +D+LRHQA+ IVA RL R+EPPLR+EVVEYM DVD H++S+
Sbjct:   761 YGRPLLPKMHYIQPIPVRHIDLLRHQAMQIVATRLSRSEPPLRREVVEYMLDVDYHMFSL 820

Query:   797 RRSKANFFRLMTVFSGLFAVGKWFADICMWKNPITTVLVHVLYLMLACFPELILPTVFLY 856
             RRSKANF R+M++ S +  V KWF DIC W+NPITT LVHVL+L+L C+PELILPTVFLY
Sbjct:   821 RRSKANFSRIMSLLSSVTLVCKWFNDICTWRNPITTCLVHVLFLILVCYPELILPTVFLY 880

Query:   857 MFLIGIWNYRYRPRYPPHMNIKISQAEAVHPDELDEEFDTFPTSRSPELVRMRYDRLRSV 916
             +F+IG+WNYRYRPR+PPHM+ ++SQA+  HPDELDEEFDTFPTSR  ++VRMRYDRLRSV
Sbjct:   881 LFVIGMWNYRYRPRHPPHMDARVSQADNAHPDELDEEFDTFPTSRPADIVRMRYDRLRSV 940

Query:   917 AGRIQTVVGDVATQGERLQALISWRDPRATAIFITFCLVAALVLFLTPFQVIAALAGFWV 976
              GR+QTVVGD+ATQGER+QAL+SWRDPRATA+FI F L+ A+ +++TPFQVIA + G ++
Sbjct:   941 GGRVQTVVGDLATQGERIQALLSWRDPRATALFIVFALIWAVFIYVTPFQVIAIIIGLFM 1000

Query:   977 MRHPRFRRRLPSVPINFFRRLPARTDSML 1005
             +RHPRFR R+PSVP NFF+RLPA++D +L
Sbjct:  1001 LRHPRFRSRMPSVPANFFKRLPAKSDMLL 1029

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2162712 AT5G48060 "AT5G48060" [Arabidopsis thaliana (taxid:3702)]

 Score = 2610 (923.8 bits), Expect = 1.4e-295, Sum P(2) = 1.4e-295
 Identities = 475/759 (62%), Positives = 614/759 (80%)

Query:   257 DKTASTYDLVERMYFLYVRVVKARELPAMDLTGSIDPFVEVKIGNYKGITKHYEKNQN-P 315
             ++   TYDLVE+M++LYVRVVKA+ELP   +TG  DP+VEVK+GNYKG TK +++    P
Sbjct:   281 ERFTGTYDLVEQMFYLYVRVVKAKELPPGSITGGCDPYVEVKLGNYKGRTKIFDRKTTIP 340

Query:   316 QWHQVFAFSRDRMQASVLEXXXXXXXXXXXXXX-GIVRFDINEVPLRVPPDSPLAPEWYR 374
             +W+QVFAF+++R+Q+SVLE               G V FD+NE+P RVPP+SPLAP+WYR
Sbjct:   341 EWNQVFAFTKERIQSSVLEVFVKDKETLGRDDILGKVVFDLNEIPTRVPPNSPLAPQWYR 400

Query:   375 LEDKKGEK--IKGELMLAVWIGTQADEAFSDAWHSDAATPVDSTPAITAVIRSKVYHSPR 432
             LED +GE   ++GE+MLAVW+GTQADEAF +AWH+D+A+ V         IRSKVY SP+
Sbjct:   401 LEDWRGEGKVVRGEIMLAVWMGTQADEAFPEAWHADSAS-VHGEGVFN--IRSKVYVSPK 457

Query:   433 LWYVRVNVVEAQDLVPTEKNHFPDVYVKAQIGNQVLKTKICQARTLSAVWNEDLLFVAAE 492
             LWY+RVNV+EAQD++P+++N  PDV+VKA +G Q LKT IC  +T + +W EDL+FV AE
Sbjct:   458 LWYLRVNVIEAQDMIPSDRNRLPDVFVKASVGMQTLKTSICSIKTTNPLWKEDLVFVVAE 517

Query:   493 PFEDHLVLTVEDRVGPGKDEIIGRVIIPLSAIEKRADERIIHSRWFNLEK--PVAVDVDQ 550
             PFE+ LV++VEDRV   KDE+IG++ +P++  EKR D R +HSRWFNL+K     ++ D 
Sbjct:   518 PFEEQLVISVEDRVHTSKDEVIGKITLPMNVFEKRLDHRPVHSRWFNLDKYGTGVLEPDA 577

Query:   551 LKKE-KFSSRIHLRVCLDGGYHVLDESTHYSSDLRPTAKQLWRPSIGILELGILNAVGLH 609
              +KE KFSSRIHLR+CL+GGYHV+DEST Y SD RPTA+QLW+  +G+LE+GIL A GL 
Sbjct:   578 RRKEHKFSSRIHLRICLEGGYHVMDESTMYISDTRPTARQLWKQPVGMLEIGILGANGLV 637

Query:   610 PMKTRDGRGTSDTYCVAKYGHKWVRTRTLVDNLSPKYNEQYTWEVFDPATVLTVGVFDNS 669
             PMK +DGRG+++ YCVAKYG KWVRTRT++D LSP++NEQYTWEV+DP TV+T+GVFDNS
Sbjct:   638 PMKLKDGRGSTNAYCVAKYGQKWVRTRTILDTLSPRWNEQYTWEVYDPCTVITLGVFDNS 697

Query:   670 QLGEKSNG---NKDLKIGKVRIRISTLETGRIYTHSYPLLVLHPTGVKKMGELHLAIRFS 726
              LG   +G   ++D +IGKVRIR+STLE  +IYTHS+PLLVL P G+KK G+L +++RF+
Sbjct:   698 HLGSAQSGTADSRDARIGKVRIRLSTLEAHKIYTHSFPLLVLQPHGLKKTGDLQISVRFT 757

Query:   727 CTSFANMLYLYSRPLLPKMHYVRPFSIMQLDMLRHQAVNIVAARLGRAEPPLRKEVVEYM 786
               S AN++Y Y  PLLPKMHY+ PF++ Q+D LR+QA+NIV+ RLGRAEPPLRKEVVEYM
Sbjct:   758 TLSLANIIYNYGHPLLPKMHYLFPFTVNQVDGLRYQAMNIVSTRLGRAEPPLRKEVVEYM 817

Query:   787 SDVDSHLWSMRRSKANFFRLMTVFSGLFAVGKWFADICMWKNPITTVLVHVLYLMLACFP 846
              DVDSHLWSMRRSKANFFR+M++ SG F VGKW  D+C W+ P+T+VLV+VL+ +L  +P
Sbjct:   818 LDVDSHLWSMRRSKANFFRIMSLLSGYFLVGKWLEDVCNWRYPVTSVLVNVLFFILVMYP 877

Query:   847 ELILPTVFLYMFLIGIWNYRYRPRYPPHMNIKISQAEAVHPDELDEEFDTFPTSRSPELV 906
             ELILPT+FLYMF IG+WN+R RPR+PPHM++K+S AEAV PDELDEEFDTFPTSRS ELV
Sbjct:   878 ELILPTMFLYMFFIGLWNFRSRPRHPPHMDMKLSWAEAVGPDELDEEFDTFPTSRSQELV 937

Query:   907 RMRYDRLRSVAGRIQTVVGDVATQGERLQALISWRDPRATAIFITFCLVAALVLFLTPFQ 966
             R+RYDRLRSVAGRIQTVVGD+A QGER+Q+L+SWRDPRAT++FI FCL A++VL+  PF+
Sbjct:   938 RLRYDRLRSVAGRIQTVVGDIAAQGERIQSLLSWRDPRATSLFILFCLAASVVLYAMPFK 997

Query:   967 VIAALAGFWVMRHPRFRRRLPSVPINFFRRLPARTDSML 1005
              IA  +G + +RHP+FR +LPS+P NFF+RLP+ TDS+L
Sbjct:   998 AIALASGLYYLRHPKFRSKLPSLPSNFFKRLPSSTDSLL 1036

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2098846 AT3G61300 "AT3G61300" [Arabidopsis thaliana (taxid:3702)]

 Score = 2384 (844.3 bits), Expect = 4.4e-277, Sum P(2) = 4.4e-277
 Identities = 443/754 (58%), Positives = 584/754 (77%)

Query:   260 ASTYDLVERMYFLYVRVVKARELPAMDLTGSIDPFVEVKIGNYKGITKHYEKNQNPQWHQ 319
             +S +DLVE M FL++++VKAR LP+MDLTGS+DP++EVK+GNY G TKH+EKNQNP W++
Sbjct:   239 SSDHDLVEPMEFLFIKIVKARNLPSMDLTGSLDPYIEVKLGNYTGKTKHFEKNQNPVWNE 298

Query:   320 VFAFSRDRMQASVLEXXXXXXXXXXXXXXGIVRFDINEVPLRVPPDSPLAPEWYRLEDKK 379
             VFAFS+   Q++VLE              G++RFD+N++P RV PDSPLAPEWYR+ ++K
Sbjct:   299 VFAFSKSNQQSNVLEVIVMDKDMVKDDFVGLIRFDLNQIPTRVAPDSPLAPEWYRVNNEK 358

Query:   380 GEKIKGELMLAVWIGTQADEAFSDAWHSDAATPVDSTPAITAVIRSKVYHSPRLWYVRVN 439
             G    GE+MLAVW GTQADEAFSDA +SDA   V+ +      +RSKVYHSPRLWY+RVN
Sbjct:   359 G----GEIMLAVWFGTQADEAFSDATYSDALNAVNKSS-----LRSKVYHSPRLWYLRVN 409

Query:   440 VVEAQDLVPT-EKNHFPDVYVKAQIGNQVLKTKICQARTLSAVWNEDLLFVAAEPFEDHL 498
             V+EAQDLV   ++   P+ YVK ++ NQV++TK   + +L+  WNE+   VAAEPFED L
Sbjct:   410 VIEAQDLVIVPDRTRLPNPYVKIRLNNQVVRTK--PSHSLNPRWNEEFTLVAAEPFED-L 466

Query:   499 VLTVEDRVGPGKDEIIGRVIIPLSAIEKRADE-RIIHSRWFNLEKPVAVDVDQLKKEKFS 557
             ++++EDRV P ++E +G V IP+  I+KR D+ R + +RWF+L+       +  ++ +F+
Sbjct:   467 IISIEDRVAPNREETLGEVHIPIGTIDKRIDDNRTVPNRWFSLK------TENQRRVRFA 520

Query:   558 S-RIHLRVCLDGGYHVLDESTHYSSDLRPTAKQLW---RPSIGILELGILNAVGLHPMKT 613
             + R+HL VCL+GGYHVLDEST+YSSD RP+ K+L    +PS G+LELGIL   GL+ +  
Sbjct:   521 TTRLHLNVCLEGGYHVLDESTYYSSDFRPSMKELLSHKQPSFGVLELGILRIEGLN-LSQ 579

Query:   614 RDGRGTSDTYCVAKYGHKWVRTRTLVDNLSPKYNEQYTWEVFDPATVLTVGVFDNSQLGE 673
                + T D YCVAKYG KWVRTRT+ + L+P++NEQYTWEV++PATV+T+GVFDN+Q+  
Sbjct:   580 EGKKETVDAYCVAKYGTKWVRTRTVTNCLNPRFNEQYTWEVYEPATVITIGVFDNNQINS 639

Query:   674 KSNGNK-DLKIGKVRIRISTLETGRIYTHSYPLLVLHPTGVKKMGELHLAIRFSCTSFAN 732
               NGNK D KIGK+R+RISTLE GRIY+HSYPLLVL P+G+KKMGELHLAIRFSC+S   
Sbjct:   640 -GNGNKGDGKIGKIRVRISTLEAGRIYSHSYPLLVLRPSGLKKMGELHLAIRFSCSSMFQ 698

Query:   733 MLYLYSRPLLPKMHYVRPFSIMQLDMLRHQAVNIVAARLGRAEPPLRKEVVEYMSDVDSH 792
             ML  Y +PLLPKMHY RP  ++Q ++LR  AVN+VAARL RAEPPLRKEVVEY+SD +SH
Sbjct:   699 MLMQYWKPLLPKMHYARPLKVVQQEILRQHAVNLVAARLSRAEPPLRKEVVEYISDSNSH 758

Query:   793 LWSMRRSKANFFRLMTVFSGLFAVGKWFADICMWKNPITTVLVHVLYLMLACFPELILPT 852
             LWSMR+S+AN FRL +VFSGL   G+WF DIC WK P+ T  +H+++L+L C PE+ILP 
Sbjct:   759 LWSMRKSRANLFRLSSVFSGLLGTGEWFQDICRWKKPVETTAIHIIFLVLVCSPEMILPV 818

Query:   853 VFLYMFLIGIWNYRYRPRYPPHMNIKISQAEAVHPDELDEEFDTFP-TSRSPELVRMRYD 911
             + L +F++G+WNYR RPR PPHM+ ++S A+ +HP+EL+EEFDTFP +S+ P +V+MRY+
Sbjct:   819 MSLCLFMLGVWNYRLRPRQPPHMDTRLSFADNIHPEELNEEFDTFPFSSQDPGIVKMRYE 878

Query:   912 RLRSVAGRIQTVVGDVATQGERLQALISWRDPRATAIFITFCLVAALVLFLTPFQVIAAL 971
             RLRS+A R QTVVGD+A QGER+QAL+SWRDPRAT+IF+  CLV+ +VL++ PF+V   L
Sbjct:   879 RLRSIASRAQTVVGDIAGQGERVQALLSWRDPRATSIFMVLCLVSTVVLYVVPFKVFVLL 938

Query:   972 AGFWVMRHPRFRRRLPSVPINFFRRLPARTDSML 1005
             AG ++MR PRFR + P  PINFFRRLPA+TD ML
Sbjct:   939 AGLYIMRPPRFRGKTPPGPINFFRRLPAKTDCML 972

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

TAIR|locus:2020280 AT1G04150 "AT1G04150" [Arabidopsis thaliana (taxid:3702)]

 Score = 2309 (817.9 bits), Expect = 6.0e-273, Sum P(2) = 6.0e-273
 Identities = 439/787 (55%), Positives = 587/787 (74%)

Query:   236 LKETSPYLGG-GKVVGGRVIHADKTASTYDLVERMYFLYVRVVKARELPAMDLTGSIDPF 294
             LKET P LGG    +GG   H DKT+STYDLVE+M +LYV +VKA++L  +   G +   
Sbjct:   244 LKETKPCLGGTSNGLGGLSSHKDKTSSTYDLVEQMQYLYVNIVKAKDLSVL---GEV--V 298

Query:   295 VEVKIGNYKGITKHYEKNQ-NPQWHQVFAFSRDRMQASVLEXXXXXXXXXXXXXXGIVRF 353
              EVK+GNY+G+TK    N  NP+W+QVF FS++R+Q+SV+E              G V F
Sbjct:   299 SEVKLGNYRGVTKKVSSNSSNPEWNQVFVFSKERIQSSVVELFVKEGNKDEYT--GRVLF 356

Query:   354 DINEVPLRVPPDSPLAPEWYRLEDKKGEKIKGELMLAVWIGTQADEAFSDAWHSDAATPV 413
             D++E+P RVPPDSPLAP+WY++E++ G +  GELM++VW GTQADEAF++AWHS A    
Sbjct:   357 DLSEIPTRVPPDSPLAPQWYKIENRNGGRGNGELMVSVWFGTQADEAFAEAWHSKAGNV- 415

Query:   414 DSTPAITAVIRSKVYHSPRLWYVRVNVVEAQDLVPTEKN----HFPDVYVKAQIGNQVLK 469
                  +++ I+SKVY SP+LWY+R++V+EAQD+   +K      FP++  K Q+G+Q+L+
Sbjct:   416 -HIEELSS-IKSKVYLSPKLWYLRISVIEAQDVAIMDKGSSLMRFPELSAKLQVGSQILR 473

Query:   470 TKICQA---RTLS-AVWNEDLLFVAAEPFEDHLVLTVEDRVGPG-----KDEIIGRVIIP 520
             T I  A   ++ S   WNEDL+FV AEPFED + + VEDR+  G      D  +GRV IP
Sbjct:   474 TAIASAIPTKSFSNPYWNEDLMFVVAEPFEDCVTVVVEDRLNGGAIGGQNDVAVGRVQIP 533

Query:   521 LSAIEKRADERIIHSRWFNLEKPVAVDVDQLKKEKFSSRIHLRVCLDGGYHVLDESTHYS 580
             +SA+E+R  + ++ SRWF+L+       +     +F SRIHLR+ LDGGYHVLDE+T Y+
Sbjct:   534 ISAVERRTGDTLVGSRWFSLD-------NGNNNNRFGSRIHLRLSLDGGYHVLDEATMYN 586

Query:   581 SDLRPTAKQLWRPSIGILELGILNAVGLHPMKTRDGR--GTSDTYCVAKYGHKWVRTRTL 638
             SD+RPTAK+LW+P +G+LE+GIL+A GL PMK RDG+  G +D+YCVAKYG KWVRTRT+
Sbjct:   587 SDVRPTAKELWKPQVGLLEIGILSATGLMPMKVRDGKCGGIADSYCVAKYGPKWVRTRTV 646

Query:   639 VDNLSPKYNEQYTWEVFDPATVLTVGVFDNSQLGEKSNGNKDLKIGKVRIRISTLETGRI 698
             VD+L PK+NEQYTWEV+DP TV+TVGVFDN+++ E +N ++D++IGKVRIR+STLETGR+
Sbjct:   647 VDSLCPKWNEQYTWEVYDPCTVVTVGVFDNARVNENNN-SRDVRIGKVRIRLSTLETGRV 705

Query:   699 YTHSYPLLVLHPTGVKKMGELHLAIRFSCTSFANMLYLYSRPLLPKMHYVRPFSIMQLDM 758
             YTHSYPL+VLHP+GVKK GELHLA+R SC +  NML++Y+ PLLPKMHY +P  +  L+ 
Sbjct:   706 YTHSYPLIVLHPSGVKKTGELHLAVRLSCGNAVNMLHMYALPLLPKMHYTQPLGVHMLER 765

Query:   759 LRHQAVNIVAARLGRAEPPLRKEVVEYMSDVDSHLWSMRRSKANFFRLMTVFSGLFAVGK 818
             LR+Q +N VAARL RAEPPL +EVVEYM D D H+WSMRRSKANFFRL+ V SGL AV K
Sbjct:   766 LRYQTLNAVAARLSRAEPPLGREVVEYMLDHDFHVWSMRRSKANFFRLVNVISGLVAVAK 825

Query:   819 WFADICMWKNPITTVLVHVLYLMLACFPELILPTVFLYMFLIGIWNYRYRPRYPPHMNIK 878
                 +  W  P+ + +  + +L +  FPEL+LP + LY   +G+W +R R RYPPHM+ +
Sbjct:   826 LVEVMRSWSKPVYSTVFVLAFLFMVLFPELLLPCLLLYTAAVGVWRFRRRSRYPPHMDAR 885

Query:   879 ISQAEAVHPDELDEEFDTFPTSRSPELVRMRYDRLRSVAGRIQTVVGDVATQGERLQALI 938
             IS AE V PDELDEEFDTFPTSR  ++VRMRYDR+RS+AGR+QTVVGD+A+QGER+QAL+
Sbjct:   886 ISHAETVFPDELDEEFDTFPTSRGFDVVRMRYDRVRSIAGRVQTVVGDMASQGERVQALL 945

Query:   939 SWRDPRATAIFITFCLVAALVLFLTPFQVIAALAGFWVMRHPRFRRRLPSVPINFFRRLP 998
             SWRDPRAT +F+ FCL+AA+  +  P ++  A++G + +R PRFRR+LPS  ++FFRRLP
Sbjct:   946 SWRDPRATFLFLMFCLLAAVGFYTVPVKLTVAISGLYYLRPPRFRRKLPSRGLSFFRRLP 1005

Query:   999 ARTDSML 1005
             +R DS+L
Sbjct:  1006 SRADSLL 1012

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2019070 QKY "AT1G74720" [Arabidopsis thaliana (taxid:3702)]

 Score = 1993 (706.6 bits), Expect = 4.9e-238, Sum P(3) = 4.9e-238
 Identities = 395/791 (49%), Positives = 534/791 (67%)

Query:   240 SPYLGGGKVVGGRVIHADKTASTYDLVERMYFLYVRVVKARELPAMDLTGSIDPFVEVKI 299
             SP +   K  GG      KT   Y+LVE M +L+VR+VKAR LP  +       +V+V+ 
Sbjct:   305 SPRVINSKTGGGETTMEKKTHHPYNLVEPMQYLFVRIVKARGLPPNE-----SAYVKVRT 359

Query:   300 GNY-----KGITKHYEKNQNPQWHQVFAFSRDRMQASVLEXXXXXXX--XXXXXXXGIVR 352
              N+       + +  E   +P+W+QVFA   +R  ++V                  G V 
Sbjct:   360 SNHFVRSKPAVNRPGESVDSPEWNQVFALGHNRSDSAVTGATLEISAWDASSESFLGGVC 419

Query:   353 FDINEVPLRVPPDSPLAPEWYRLE----DKKGEKIKGELMLAVWIGTQADEAFSDAWHSD 408
             FD++EVP+R PPDSPLAP+WYRLE    D+   +I G++ L+VWIGTQ DEAF +AW SD
Sbjct:   420 FDLSEVPVRDPPDSPLAPQWYRLEGSGADQNSGRISGDIQLSVWIGTQVDEAFPEAWSSD 479

Query:   409 AATPVDSTPAITAVIRSKVYHSPRLWYVRVNVVEAQDL--VPT-EKNHFPDVYVKAQIGN 465
             A       P + A  RSKVY SP+LWY+RV V+EAQDL   P       P++ VKAQ+G 
Sbjct:   480 A-------PHV-AHTRSKVYQSPKLWYLRVTVLEAQDLHIAPNLPPLTAPEIRVKAQLGF 531

Query:   466 QVLKTKICQARTLSAV--WNEDLLFVAAEPFEDHLVLTVEDRVGPGKDEIIGRVIIPLSA 523
             Q  +T+       S    W+ED++FVA EP ED LVL VEDR    +  ++G  +IP+S+
Sbjct:   532 QSARTRRGSMNNHSGSFHWHEDMIFVAGEPLEDCLVLMVEDRTTK-EATLLGHAMIPVSS 590

Query:   524 IEKRADERIIHSRWFNLEKPVAVDVDQLKKE------KFSSRIHLRVCLDGGYHVLDEST 577
             IE+R DER + S+W  LE                    +  RI LR+CL+GGYHVL+E+ 
Sbjct:   591 IEQRIDERFVPSKWHTLEGEGGGGGGGGGPGGGGGGGPYCGRISLRLCLEGGYHVLEEAA 650

Query:   578 HYSSDLRPTAKQLWRPSIGILELGILNAVGLHPMKTRDG-RGTSDTYCVAKYGHKWVRTR 636
             H  SD RPTAKQLW+P IGILELGIL A GL PMK ++G +G++D YCVAKYG KWVRTR
Sbjct:   651 HVCSDFRPTAKQLWKPPIGILELGILGARGLLPMKAKNGGKGSTDAYCVAKYGKKWVRTR 710

Query:   637 TLVDNLSPKYNEQYTWEVFDPATVLTVGVFDNSQL-GEKSNGNKDLKIGKVRIRISTLET 695
             T+ D+  P+++EQYTW+V+DP TVLTVGVFDN ++  + S+   D +IGK+RIR+STLE+
Sbjct:   711 TITDSFDPRWHEQYTWQVYDPCTVLTVGVFDNWRMFSDASDDRPDTRIGKIRIRVSTLES 770

Query:   696 GRIYTHSYPLLVLHPTGVKKMGELHLAIRFSCTSFA-NMLYLYSRPLLPKMHYVRPFSIM 754
              ++YT+SYPLLVL P+G+KKMGE+ +A+RF+C S   ++   Y +PLLP+MHY+RP  + 
Sbjct:   771 NKVYTNSYPLLVLLPSGMKKMGEIEVAVRFACPSLLPDVCAAYGQPLLPRMHYIRPLGVA 830

Query:   755 QLDMLRHQAVNIVAARLGRAEPPLRKEVVEYMSDVDSHLWSMRRSKANFFRLMTVFSGLF 814
             Q D LR  A  +VAA L RAEPPL  EVV YM D DSH WSMR+SKAN++R++ V +   
Sbjct:   831 QQDALRGAATKMVAAWLARAEPPLGPEVVRYMLDADSHAWSMRKSKANWYRIVGVLAWAV 890

Query:   815 AVGKWFADICMWKNPITTVLVHVLYLMLACFPELILPTVFLYMFLIGIWNYRYRPRYPPH 874
              + KW  +I  W+NP+TTVLVH+LYL+L  +P+L++PT FLY+ +IG+W YR+RP+ P  
Sbjct:   891 GLAKWLDNIRRWRNPVTTVLVHILYLVLVWYPDLVVPTAFLYVVMIGVWYYRFRPKIPAG 950

Query:   875 MNIKISQAEAVHPDELDEEFDTFPTSRSPELVRMRYDRLRSVAGRIQTVVGDVATQGERL 934
             M+I++SQAE V PDELDEEFDT P+SR PE++R RYDRLR +A R+QT++GD A QGER+
Sbjct:   951 MDIRLSQAETVDPDELDEEFDTIPSSRRPEVIRARYDRLRILAVRVQTILGDFAAQGERI 1010

Query:   935 QALISWRDPRATAIFITFCLVAALVLFLTPFQVIAALAGFWVMRHPRFRRRLPSVPINFF 994
             QAL+SWRDPRAT +FI  CLV  +VL+  P +++A   GF+ +RHP FR  +P+  +NFF
Sbjct:  1011 QALVSWRDPRATKLFIAICLVITIVLYAVPAKMVAVALGFYYLRHPMFRDTMPTASLNFF 1070

Query:   995 RRLPARTDSML 1005
             RRLP+ +D ++
Sbjct:  1071 RRLPSLSDRLI 1081

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0005886 "plasma membrane" evidence=IDA

GO:0048513 "organ development" evidence=IMP

GO:0009506 "plasmodesma" evidence=IDA

GO:0009640 "photomorphogenesis" evidence=RCA

GO:0009793 "embryo development ending in seed dormancy" evidence=RCA

GO:0009845 "seed germination" evidence=RCA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0009933 "meristem structural organization" evidence=RCA

GO:0010162 "seed dormancy process" evidence=RCA

GO:0010182 "sugar mediated signaling pathway" evidence=RCA

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA

GO:0016567 "protein ubiquitination" evidence=RCA

GO:0019915 "lipid storage" evidence=RCA

GO:0050826 "response to freezing" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	1005
pfam08372	156	pfam08372, PRT_C, Plant phosphoribosyltransferase	1e-106
cd04019	150	cd04019, C2C_MCTP_PRT_plant, C2 domain third repea	2e-82
cd08378	121	cd08378, C2B_MCTP_PRT_plant, C2 domain second repe	2e-63
cd04022	127	cd04022, C2A_MCTP_PRT_plant, C2 domain first repea	1e-62
cd08379	126	cd08379, C2D_MCTP_PRT_plant, C2 domain fourth repe	2e-61
smart00239	101	smart00239, C2, Protein kinase C conserved region	4e-20
cd00030	102	cd00030, C2, C2 domain	4e-20
pfam00168	85	pfam00168, C2, C2 domain	1e-19
pfam00168	85	pfam00168, C2, C2 domain	3e-19
pfam00168	85	pfam00168, C2, C2 domain	5e-19
cd00030	102	cd00030, C2, C2 domain	5e-18
smart00239	101	smart00239, C2, Protein kinase C conserved region	6e-18
cd00030	102	cd00030, C2, C2 domain	6e-18
cd08377	119	cd08377, C2C_MCTP_PRT, C2 domain third repeat foun	8e-16
smart00239	101	smart00239, C2, Protein kinase C conserved region	2e-15
cd08376	116	cd08376, C2B_MCTP_PRT, C2 domain second repeat fou	8e-15
cd04036	119	cd04036, C2_cPLA2, C2 domain present in cytosolic	4e-14
cd00276	134	cd00276, C2B_Synaptotagmin, C2 domain second repea	7e-14
pfam00168	85	pfam00168, C2, C2 domain	1e-13
cd00030	102	cd00030, C2, C2 domain	3e-13
cd08688	110	cd08688, C2_KIAA0528-like, C2 domain found in the	2e-12
cd04022	127	cd04022, C2A_MCTP_PRT_plant, C2 domain first repea	1e-11
smart00239	101	smart00239, C2, Protein kinase C conserved region	1e-11
cd04031	125	cd04031, C2A_RIM1alpha, C2 domain first repeat con	2e-11
cd04025	123	cd04025, C2B_RasA1_RasA4, C2 domain second repeat	2e-11
cd08376	116	cd08376, C2B_MCTP_PRT, C2 domain second repeat fou	3e-11
cd00276	134	cd00276, C2B_Synaptotagmin, C2 domain second repea	3e-11
cd08682	126	cd08682, C2_Rab11-FIP_classI, C2 domain found in R	3e-11
cd08386	125	cd08386, C2A_Synaptotagmin-7, C2A domain first rep	6e-11
cd08391	121	cd08391, C2A_C2C_Synaptotagmin_like, C2 domain fir	4e-10
cd08375	136	cd08375, C2_Intersectin, C2 domain present in Inte	2e-09
cd04024	128	cd04024, C2A_Synaptotagmin-like, C2 domain first r	2e-09
cd04027	127	cd04027, C2B_Munc13, C2 domain second repeat in Mu	3e-09
cd04026	131	cd04026, C2_PKC_alpha_gamma, C2 domain in Protein	3e-09
cd04009	133	cd04009, C2B_Munc13-like, C2 domain second repeat	3e-09
cd08377	119	cd08377, C2C_MCTP_PRT, C2 domain third repeat foun	4e-09
cd08391	121	cd08391, C2A_C2C_Synaptotagmin_like, C2 domain fir	4e-09
cd04038	145	cd04038, C2_ArfGAP, C2 domain present in Arf GTPas	8e-09
cd04035	123	cd04035, C2A_Rabphilin_Doc2, C2 domain first repea	1e-08
cd04040	115	cd04040, C2D_Tricalbin-like, C2 domain fourth repe	2e-08
cd04042	121	cd04042, C2A_MCTP_PRT, C2 domain first repeat foun	2e-08
cd08386	125	cd08386, C2A_Synaptotagmin-7, C2A domain first rep	3e-08
cd08405	136	cd08405, C2B_Synaptotagmin-7, C2 domain second rep	3e-08
cd04050	105	cd04050, C2B_Synaptotagmin-like, C2 domain second	4e-08
cd08675	137	cd08675, C2B_RasGAP, C2 domain second repeat of Ra	4e-08
cd00276	134	cd00276, C2B_Synaptotagmin, C2 domain second repea	5e-08
cd08385	124	cd08385, C2A_Synaptotagmin-1-5-6-9-10, C2A domain	5e-08
cd04033	133	cd04033, C2_NEDD4_NEDD4L, C2 domain present in the	5e-08
cd08405	136	cd08405, C2B_Synaptotagmin-7, C2 domain second rep	6e-08
cd04040	115	cd04040, C2D_Tricalbin-like, C2 domain fourth repe	7e-08
cd04037	124	cd04037, C2E_Ferlin, C2 domain fifth repeat in Fer	7e-08
cd04046	126	cd04046, C2_Calpain, C2 domain present in Calpain	7e-08
cd04038	145	cd04038, C2_ArfGAP, C2 domain present in Arf GTPas	9e-08
cd08377	119	cd08377, C2C_MCTP_PRT, C2 domain third repeat foun	1e-07
cd04026	131	cd04026, C2_PKC_alpha_gamma, C2 domain in Protein	1e-07
cd00275	128	cd00275, C2_PLC_like, C2 domain present in Phospho	1e-07
cd08384	133	cd08384, C2B_Rabphilin_Doc2, C2 domain second repe	1e-07
cd04031	125	cd04031, C2A_RIM1alpha, C2 domain first repeat con	2e-07
cd08391	121	cd08391, C2A_C2C_Synaptotagmin_like, C2 domain fir	2e-07
cd04024	128	cd04024, C2A_Synaptotagmin-like, C2 domain first r	2e-07
cd04030	127	cd04030, C2C_KIAA1228, C2 domain third repeat pres	2e-07
cd08682	126	cd08682, C2_Rab11-FIP_classI, C2 domain found in R	3e-07
cd04027	127	cd04027, C2B_Munc13, C2 domain second repeat in Mu	3e-07
cd04042	121	cd04042, C2A_MCTP_PRT, C2 domain first repeat foun	3e-07
cd04045	120	cd04045, C2C_Tricalbin-like, C2 domain third repea	3e-07
cd04040	115	cd04040, C2D_Tricalbin-like, C2 domain fourth repe	4e-07
cd08384	133	cd08384, C2B_Rabphilin_Doc2, C2 domain second repe	4e-07
cd04044	124	cd04044, C2A_Tricalbin-like, C2 domain first repea	4e-07
cd08402	136	cd08402, C2B_Synaptotagmin-1, C2 domain second rep	4e-07
cd04022	127	cd04022, C2A_MCTP_PRT_plant, C2 domain first repea	6e-07
cd08377	119	cd08377, C2C_MCTP_PRT, C2 domain third repeat foun	6e-07
cd08378	121	cd08378, C2B_MCTP_PRT_plant, C2 domain second repe	1e-06
cd04022	127	cd04022, C2A_MCTP_PRT_plant, C2 domain first repea	1e-06
cd04033	133	cd04033, C2_NEDD4_NEDD4L, C2 domain present in the	1e-06
cd04037	124	cd04037, C2E_Ferlin, C2 domain fifth repeat in Fer	1e-06
cd08373	127	cd08373, C2A_Ferlin, C2 domain first repeat in Fer	1e-06
cd04025	123	cd04025, C2B_RasA1_RasA4, C2 domain second repeat	2e-06
cd04009	133	cd04009, C2B_Munc13-like, C2 domain second repeat	2e-06
cd04044	124	cd04044, C2A_Tricalbin-like, C2 domain first repea	2e-06
cd08681	118	cd08681, C2_fungal_Inn1p-like, C2 domain found in	2e-06
cd04011	111	cd04011, C2B_Ferlin, C2 domain second repeat in Fe	2e-06
cd04017	135	cd04017, C2D_Ferlin, C2 domain fourth repeat in Fe	3e-06
cd08406	136	cd08406, C2B_Synaptotagmin-12, C2 domain second re	4e-06
cd04043	126	cd04043, C2_Munc13_fungal, C2 domain in Munc13 (ma	4e-06
cd08379	126	cd08379, C2D_MCTP_PRT_plant, C2 domain fourth repe	5e-06
cd08375	136	cd08375, C2_Intersectin, C2 domain present in Inte	6e-06
cd04038	145	cd04038, C2_ArfGAP, C2 domain present in Arf GTPas	7e-06
cd08391	121	cd08391, C2A_C2C_Synaptotagmin_like, C2 domain fir	8e-06
cd04030	127	cd04030, C2C_KIAA1228, C2 domain third repeat pres	8e-06
cd04032	127	cd04032, C2_Perforin, C2 domain of Perforin	1e-05
cd04054	121	cd04054, C2A_Rasal1_RasA4, C2 domain first repeat	1e-05
COG5038	1227	COG5038, COG5038, Ca2+-dependent lipid-binding pro	1e-05
cd08376	116	cd08376, C2B_MCTP_PRT, C2 domain second repeat fou	2e-05
cd04024	128	cd04024, C2A_Synaptotagmin-like, C2 domain first r	2e-05
cd04042	121	cd04042, C2A_MCTP_PRT, C2 domain first repeat foun	2e-05
cd04021	125	cd04021, C2_E3_ubiquitin_ligase, C2 domain present	2e-05
cd04020	162	cd04020, C2B_SLP_1-2-3-4, C2 domain second repeat	2e-05
cd08404	136	cd08404, C2B_Synaptotagmin-4, C2 domain second rep	3e-05
cd04036	119	cd04036, C2_cPLA2, C2 domain present in cytosolic	4e-05
cd00275	128	cd00275, C2_PLC_like, C2 domain present in Phospho	4e-05
COG5038	1227	COG5038, COG5038, Ca2+-dependent lipid-binding pro	4e-05
cd08521	123	cd08521, C2A_SLP, C2 domain first repeat present i	4e-05
cd08401	121	cd08401, C2A_RasA2_RasA3, C2 domain first repeat p	4e-05
cd04035	123	cd04035, C2A_Rabphilin_Doc2, C2 domain first repea	5e-05
cd08402	136	cd08402, C2B_Synaptotagmin-1, C2 domain second rep	5e-05
cd04026	131	cd04026, C2_PKC_alpha_gamma, C2 domain in Protein	6e-05
cd08691	137	cd08691, C2_NEDL1-like, C2 domain present in NEDL1	6e-05
cd04025	123	cd04025, C2B_RasA1_RasA4, C2 domain second repeat	7e-05
cd08403	134	cd08403, C2B_Synaptotagmin-3-5-6-9-10, C2 domain s	7e-05
cd04037	124	cd04037, C2E_Ferlin, C2 domain fifth repeat in Fer	8e-05
cd04049	124	cd04049, C2_putative_Elicitor-responsive_gene, C2	9e-05
cd08382	123	cd08382, C2_Smurf-like, C2 domain present in Smad	9e-05
cd04027	127	cd04027, C2B_Munc13, C2 domain second repeat in Mu	1e-04
cd04031	125	cd04031, C2A_RIM1alpha, C2 domain first repeat con	2e-04
cd08375	136	cd08375, C2_Intersectin, C2 domain present in Inte	2e-04
cd04035	123	cd04035, C2A_Rabphilin_Doc2, C2 domain first repea	2e-04
cd04046	126	cd04046, C2_Calpain, C2 domain present in Calpain	2e-04
cd00275	128	cd00275, C2_PLC_like, C2 domain present in Phospho	2e-04
cd04043	126	cd04043, C2_Munc13_fungal, C2 domain in Munc13 (ma	2e-04
cd08404	136	cd08404, C2B_Synaptotagmin-4, C2 domain second rep	2e-04
cd08383	117	cd08383, C2A_RasGAP, C2 domain (first repeat) of R	2e-04
cd08678	126	cd08678, C2_C21orf25-like, C2 domain found in the	2e-04
cd04051	125	cd04051, C2_SRC2_like, C2 domain present in Soybea	2e-04
cd04044	124	cd04044, C2A_Tricalbin-like, C2 domain first repea	3e-04
cd04011	111	cd04011, C2B_Ferlin, C2 domain second repeat in Fe	3e-04
cd04047	110	cd04047, C2B_Copine, C2 domain second repeat in Co	3e-04
cd04048	120	cd04048, C2A_Copine, C2 domain first repeat in Cop	3e-04
cd04018	151	cd04018, C2C_Ferlin, C2 domain third repeat in Fer	3e-04
cd08410	135	cd08410, C2B_Synaptotagmin-17, C2 domain second re	3e-04
cd08682	126	cd08682, C2_Rab11-FIP_classI, C2 domain found in R	4e-04
cd04042	121	cd04042, C2A_MCTP_PRT, C2 domain first repeat foun	4e-04
cd08394	127	cd08394, C2A_Munc13, C2 domain first repeat in Mun	4e-04
cd04027	127	cd04027, C2B_Munc13, C2 domain second repeat in Mu	5e-04
COG5038	1227	COG5038, COG5038, Ca2+-dependent lipid-binding pro	5e-04
cd04052	111	cd04052, C2B_Tricalbin-like, C2 domain second repe	5e-04
cd04049	124	cd04049, C2_putative_Elicitor-responsive_gene, C2	6e-04
cd08376	116	cd08376, C2B_MCTP_PRT, C2 domain second repeat fou	7e-04
cd08390	123	cd08390, C2A_Synaptotagmin-15-17, C2A domain first	8e-04
cd04038	145	cd04038, C2_ArfGAP, C2 domain present in Arf GTPas	0.001
cd04040	115	cd04040, C2D_Tricalbin-like, C2 domain fourth repe	0.001
cd04050	105	cd04050, C2B_Synaptotagmin-like, C2 domain second	0.001
cd04018	151	cd04018, C2C_Ferlin, C2 domain third repeat in Fer	0.001
cd08388	128	cd08388, C2A_Synaptotagmin-4-11, C2A domain first	0.001
cd04029	125	cd04029, C2A_SLP-4_5, C2 domain first repeat prese	0.001
cd04009	133	cd04009, C2B_Munc13-like, C2 domain second repeat	0.002
cd04046	126	cd04046, C2_Calpain, C2 domain present in Calpain	0.002
cd04030	127	cd04030, C2C_KIAA1228, C2 domain third repeat pres	0.002
cd04017	135	cd04017, C2D_Ferlin, C2 domain fourth repeat in Fe	0.002
cd04020	162	cd04020, C2B_SLP_1-2-3-4, C2 domain second repeat	0.002
cd08388	128	cd08388, C2A_Synaptotagmin-4-11, C2A domain first	0.002
cd04014	132	cd04014, C2_PKC_epsilon, C2 domain in Protein Kina	0.002
cd08409	137	cd08409, C2B_Synaptotagmin-15, C2 domain second re	0.002
cd08385	124	cd08385, C2A_Synaptotagmin-1-5-6-9-10, C2A domain	0.003
cd04051	125	cd04051, C2_SRC2_like, C2 domain present in Soybea	0.003
cd04052	111	cd04052, C2B_Tricalbin-like, C2 domain second repe	0.003
cd04041	111	cd04041, C2A_fungal, C2 domain first repeat; funga	0.003
COG5038	1227	COG5038, COG5038, Ca2+-dependent lipid-binding pro	0.004
cd08387	124	cd08387, C2A_Synaptotagmin-8, C2A domain first rep	0.004

>gnl|CDD|192017 pfam08372, PRT_C, Plant phosphoribosyltransferase C-terminal

 Score =  327 bits (841), Expect = e-106
 Identities = 121/156 (77%), Positives = 147/156 (94%)

Query: 850  LPTVFLYMFLIGIWNYRYRPRYPPHMNIKISQAEAVHPDELDEEFDTFPTSRSPELVRMR 909
            LPT+FLY+F+IG+WNYR+RPR+PPHM+ ++S A+A HPDELDEEFDTFPTSR P++VRMR
Sbjct: 1    LPTIFLYLFVIGLWNYRFRPRHPPHMDTRLSHADAAHPDELDEEFDTFPTSRPPDVVRMR 60

Query: 910  YDRLRSVAGRIQTVVGDVATQGERLQALISWRDPRATAIFITFCLVAALVLFLTPFQVIA 969
            YDRLRSVAGR+QTVVGD+ATQGERLQAL+SWRDPRATAIF+ FCLVAA+VL++ PF+V+A
Sbjct: 61   YDRLRSVAGRVQTVVGDIATQGERLQALLSWRDPRATAIFVLFCLVAAVVLYVVPFKVVA 120

Query: 970  ALAGFWVMRHPRFRRRLPSVPINFFRRLPARTDSML 1005
             LAGF+ +RHPRFR R+PSVP+NFFRRLP+RTDSML
Sbjct: 121  LLAGFYYLRHPRFRSRMPSVPLNFFRRLPSRTDSML 156

This domain is found at the C-terminus of phosphoribosyltransferases and phosphoribosyltransferase-like proteins. It contains putative transmembrane regions. It often appears together with calcium-ion dependent C2 domains (pfam00168). Length = 156

>gnl|CDD|175986 cd04019, C2C_MCTP_PRT_plant, C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

 Score =  262 bits (673), Expect = 2e-82
 Identities = 102/151 (67%), Positives = 127/151 (84%), Gaps = 1/151 (0%)

Query: 435 YVRVNVVEAQDLVPTEKNHFPDVYVKAQIGNQVLKTKICQARTLSAVWNEDLLFVAAEPF 494
           Y+RV V+EAQDLVP++KN  P+V+VKAQ+GNQVL+T+  Q R  +  WNE+L+FVAAEPF
Sbjct: 1   YLRVTVIEAQDLVPSDKNRVPEVFVKAQLGNQVLRTRPSQTRNGNPSWNEELMFVAAEPF 60

Query: 495 EDHLVLTVEDRVGPGKDEIIGRVIIPLSAIEKRADERIIHSRWFNLEKPVAVDVDQLKKE 554
           EDHL+L+VEDRVGP KDE +GR +IPL+ IE+R D+R + SRWF+LE+P     +Q KK 
Sbjct: 61  EDHLILSVEDRVGPNKDEPLGRAVIPLNDIERRVDDRPVPSRWFSLERPGGAM-EQKKKR 119

Query: 555 KFSSRIHLRVCLDGGYHVLDESTHYSSDLRP 585
           KF+SRIHLR+CLDGGYHVLDESTHYSSDLRP
Sbjct: 120 KFASRIHLRLCLDGGYHVLDESTHYSSDLRP 150

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 150

>gnl|CDD|176024 cd08378, C2B_MCTP_PRT_plant, C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

 Score =  209 bits (535), Expect = 2e-63
 Identities = 86/125 (68%), Positives = 100/125 (80%), Gaps = 4/125 (3%)

Query: 271 FLYVRVVKARELPAMDLTGSIDPFVEVKIGNYKGITKHYEKNQNPQWHQVFAFSRDRMQA 330
           +LYVRVVKAR LPA     S DP VEVK+GNYKG TK  E+  NP+W+QVFAFS+DR+Q 
Sbjct: 1   YLYVRVVKARGLPAN----SNDPVVEVKLGNYKGSTKAIERTSNPEWNQVFAFSKDRLQG 56

Query: 331 SVLEVVIKDKDLVKDDFVGIVRFDINEVPLRVPPDSPLAPEWYRLEDKKGEKIKGELMLA 390
           S LEV + DKD  KDDF+G V FD++EVP RVPPDSPLAP+WYRLEDKKG ++ GELMLA
Sbjct: 57  STLEVSVWDKDKAKDDFLGGVCFDLSEVPTRVPPDSPLAPQWYRLEDKKGGRVGGELMLA 116

Query: 391 VWIGT 395
           VW GT
Sbjct: 117 VWFGT 121

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 121

>gnl|CDD|175989 cd04022, C2A_MCTP_PRT_plant, C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

 Score =  207 bits (529), Expect = 1e-62
 Identities = 81/127 (63%), Positives = 98/127 (77%)

Query: 5   KLGVQVVGAHNLLPKDGKGSSSAFVELYFDGQRFRTTIKENDLNPVWNESFYFNISDASK 64
           KL V+VV A +L+PKDG+GSSSA+VEL FDGQ+ RT  K  DLNPVWNE   FN+SD S+
Sbjct: 1   KLVVEVVDAQDLMPKDGQGSSSAYVELDFDGQKKRTRTKPKDLNPVWNEKLVFNVSDPSR 60

Query: 65  LHYLTLEAYIYNNIGDTNSRSFLGKVCLTGNSFVPLSDSVVLHYPLEKRGIFSHVRGELG 124
           L  L LE Y+YN+      RSFLG+V ++G SFVP S++VV  YPLEKRG+FS VRGE+G
Sbjct: 61  LSNLVLEVYVYNDRRSGRRRSFLGRVRISGTSFVPPSEAVVQRYPLEKRGLFSRVRGEIG 120

Query: 125 LKVYITD 131
           LKVYITD
Sbjct: 121 LKVYITD 127

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 127

>gnl|CDD|176025 cd08379, C2D_MCTP_PRT_plant, C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

 Score =  204 bits (520), Expect = 2e-61
 Identities = 83/126 (65%), Positives = 100/126 (79%)

Query: 597 ILELGILNAVGLHPMKTRDGRGTSDTYCVAKYGHKWVRTRTLVDNLSPKYNEQYTWEVFD 656
           ILE+GIL A GL  ++ +DGRG++D YCVAKYG KWVRTRT+ D+ +P++NEQYTW V+D
Sbjct: 1   ILEVGILGAQGLDVLRAKDGRGSTDAYCVAKYGPKWVRTRTVEDSSNPRWNEQYTWPVYD 60

Query: 657 PATVLTVGVFDNSQLGEKSNGNKDLKIGKVRIRISTLETGRIYTHSYPLLVLHPTGVKKM 716
           P TVLTVGVFDNSQ   K     D+ IGKVRIR+STLE  R+Y HSYPLL L+P+GVKKM
Sbjct: 61  PCTVLTVGVFDNSQSHWKEAVQPDVLIGKVRIRLSTLEDDRVYAHSYPLLSLNPSGVKKM 120

Query: 717 GELHLA 722
           GEL  A
Sbjct: 121 GELECA 126

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fourth C2 repeat, C2D, and has a type-II topology. Length = 126

>gnl|CDD|214577 smart00239, C2, Protein kinase C conserved region 2 (CalB)

 Score = 86.0 bits (213), Expect = 4e-20
 Identities = 30/99 (30%), Positives = 50/99 (50%), Gaps = 4/99 (4%)

Query: 271 FLYVRVVKARELPAMDLTGSIDPFVEVKIGNYKGI---TKHYEKNQNPQWHQVFAFSRDR 327
            L V+++ AR LP  D  G  DP+V+V +         TK  +   NP W++ F F    
Sbjct: 1   TLTVKIISARNLPPKDKGGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPP 60

Query: 328 MQASVLEVVIKDKDLV-KDDFVGIVRFDINEVPLRVPPD 365
            + + LE+ + DKD   +DDF+G V   ++++ L    +
Sbjct: 61  PELAELEIEVYDKDRFGRDDFIGQVTIPLSDLLLGGRHE 99

Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotagmins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles. Length = 101

>gnl|CDD|175973 cd00030, C2, C2 domain

 Score = 86.0 bits (213), Expect = 4e-20
 Identities = 38/106 (35%), Positives = 53/106 (50%), Gaps = 6/106 (5%)

Query: 272 LYVRVVKARELPAMDLTGSIDPFVEVKIGNY-KGITKHYEKNQNPQWHQVFAFSRDRMQA 330
           L V V++AR LPA DL G  DP+V+V +G   K  TK  +   NP W++ F F     ++
Sbjct: 1   LRVTVIEARNLPAKDLNGKSDPYVKVSLGGKQKFKTKVVKNTLNPVWNETFEFPVLDPES 60

Query: 331 SVLEVVIKDKDLV-KDDFVGIVRFDINEVPLRVPPDSPLAPEWYRL 375
             L V + DKD   KDDF+G V   ++E    +         W  L
Sbjct: 61  DTLTVEVWDKDRFSKDDFLGEVEIPLSE----LLDSGKEGELWLPL 102

The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 102

>gnl|CDD|215765 pfam00168, C2, C2 domain

 Score = 83.9 bits (208), Expect = 1e-19
 Identities = 33/86 (38%), Positives = 44/86 (51%), Gaps = 4/86 (4%)

Query: 436 VRVNVVEAQDLVPTEKNHFPDVYVKAQIGNQ---VLKTKICQARTLSAVWNEDLLFVAAE 492
           +RV V+ A++L P + N   D YVK  +G Q     KTK+ +  TL+ VWNE   F    
Sbjct: 1   LRVTVISAKNLPPKDLNGKSDPYVKVSLGGQKKDTKKTKVVK-NTLNPVWNETFTFEVTL 59

Query: 493 PFEDHLVLTVEDRVGPGKDEIIGRVI 518
           P    L + V D    GKD+ IG V 
Sbjct: 60  PELAELRIEVYDYDRFGKDDFIGEVT 85

Length = 85

>gnl|CDD|215765 pfam00168, C2, C2 domain

 Score = 83.1 bits (206), Expect = 3e-19
 Identities = 34/89 (38%), Positives = 49/89 (55%), Gaps = 7/89 (7%)

Query: 6  LGVQVVGAHNLLPKDGKGSSSAFVELYFDGQR---FRTTIKENDLNPVWNESFYFNISDA 62
          L V V+ A NL PKD  G S  +V++   GQ+    +T + +N LNPVWNE+F F ++  
Sbjct: 1  LRVTVISAKNLPPKDLNGKSDPYVKVSLGGQKKDTKKTKVVKNTLNPVWNETFTFEVTLP 60

Query: 63 SKLHYLTLEAYIYNNIGDTNSRSFLGKVC 91
            L  L +E Y Y+  G      F+G+V 
Sbjct: 61 E-LAELRIEVYDYDRFG---KDDFIGEVT 85

Length = 85

>gnl|CDD|215765 pfam00168, C2, C2 domain

 Score = 81.9 bits (203), Expect = 5e-19
 Identities = 31/85 (36%), Positives = 44/85 (51%), Gaps = 4/85 (4%)

Query: 272 LYVRVVKARELPAMDLTGSIDPFVEVKIGNYKGI---TKHYEKNQNPQWHQVFAFSRDRM 328
           L V V+ A+ LP  DL G  DP+V+V +G  K     TK  +   NP W++ F F     
Sbjct: 1   LRVTVISAKNLPPKDLNGKSDPYVKVSLGGQKKDTKKTKVVKNTLNPVWNETFTFEVTLP 60

Query: 329 QASVLEVVIKDKDLV-KDDFVGIVR 352
           + + L + + D D   KDDF+G V 
Sbjct: 61  ELAELRIEVYDYDRFGKDDFIGEVT 85

Length = 85

>gnl|CDD|175973 cd00030, C2, C2 domain

 Score = 79.8 bits (197), Expect = 5e-18
 Identities = 35/104 (33%), Positives = 52/104 (50%), Gaps = 5/104 (4%)

Query: 8   VQVVGAHNLLPKDGKGSSSAFVELYFDG-QRFRTTIKENDLNPVWNESFYFNISDASKLH 66
           V V+ A NL  KD  G S  +V++   G Q+F+T + +N LNPVWNE+F F + D     
Sbjct: 3   VTVIEARNLPAKDLNGKSDPYVKVSLGGKQKFKTKVVKNTLNPVWNETFEFPVLDPES-D 61

Query: 67  YLTLEAYIYNNIGDTNSRSFLGKVCLTGNSFVPLSDSVVLHYPL 110
            LT+E +  +         FLG+V +  +  +       L  PL
Sbjct: 62  TLTVEVWDKDRFS---KDDFLGEVEIPLSELLDSGKEGELWLPL 102

The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 102

>gnl|CDD|214577 smart00239, C2, Protein kinase C conserved region 2 (CalB)

 Score = 79.5 bits (196), Expect = 6e-18
 Identities = 32/96 (33%), Positives = 48/96 (50%), Gaps = 4/96 (4%)

Query: 435 YVRVNVVEAQDLVPTEKNHFPDVYVKAQIGNQ---VLKTKICQARTLSAVWNEDLLFVAA 491
            + V ++ A++L P +K    D YVK  +        KTK+ +  TL+ VWNE   F   
Sbjct: 1   TLTVKIISARNLPPKDKGGKSDPYVKVSLDGDPKEKKKTKVVK-NTLNPVWNETFEFEVP 59

Query: 492 EPFEDHLVLTVEDRVGPGKDEIIGRVIIPLSAIEKR 527
            P    L + V D+   G+D+ IG+V IPLS +   
Sbjct: 60  PPELAELEIEVYDKDRFGRDDFIGQVTIPLSDLLLG 95

Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotagmins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles. Length = 101

>gnl|CDD|175973 cd00030, C2, C2 domain

 Score = 79.8 bits (197), Expect = 6e-18
 Identities = 39/106 (36%), Positives = 54/106 (50%), Gaps = 5/106 (4%)

Query: 436 VRVNVVEAQDLVPTEKNHFPDVYVKAQIGN-QVLKTKICQARTLSAVWNEDLLFVAAEPF 494
           +RV V+EA++L   + N   D YVK  +G  Q  KTK+ +  TL+ VWNE   F   +P 
Sbjct: 1   LRVTVIEARNLPAKDLNGKSDPYVKVSLGGKQKFKTKVVK-NTLNPVWNETFEFPVLDPE 59

Query: 495 EDHLVLTVEDRVGPGKDEIIGRVIIPLSAIEKRADERIIHSRWFNL 540
            D L + V D+    KD+ +G V IPLS +    D       W  L
Sbjct: 60  SDTLTVEVWDKDRFSKDDFLGEVEIPLSELL---DSGKEGELWLPL 102

The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 102

>gnl|CDD|176023 cd08377, C2C_MCTP_PRT, C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

 Score = 74.3 bits (183), Expect = 8e-16
 Identities = 39/121 (32%), Positives = 63/121 (52%), Gaps = 10/121 (8%)

Query: 271 FLYVRVVKARELPAMDLTGSIDPFVEVKIGNYKGITKHYEKNQNPQWHQVFAFSRDRMQA 330
           FL V+V++A  L A D+ G  DPF  +++ N +  T    K  NP+W+++F F    +  
Sbjct: 2   FLQVKVIRASGLAAADIGGKSDPFCVLELVNARLQTHTIYKTLNPEWNKIFTFPIKDIH- 60

Query: 331 SVLEVVIKDKDLVKD-DFVGIVRFDINEVPLRVPPDSPLAPEWYRLEDKK-GEKIKGELM 388
            VLEV + D+D  K  +F+G V   +  +            +WY L+DKK   + KG ++
Sbjct: 61  DVLEVTVYDEDKDKKPEFLGKVAIPLLSIKNGE-------RKWYALKDKKLRTRAKGSIL 113

Query: 389 L 389
           L
Sbjct: 114 L 114

MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 119

>gnl|CDD|214577 smart00239, C2, Protein kinase C conserved region 2 (CalB)

 Score = 72.5 bits (178), Expect = 2e-15
 Identities = 32/91 (35%), Positives = 51/91 (56%), Gaps = 7/91 (7%)

Query: 5  KLGVQVVGAHNLLPKDGKGSSSAFVELYFDGQ---RFRTTIKENDLNPVWNESFYFNISD 61
           L V+++ A NL PKD  G S  +V++  DG    + +T + +N LNPVWNE+F F +  
Sbjct: 1  TLTVKIISARNLPPKDKGGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPP 60

Query: 62 ASKLHYLTLEAYIYNNIGDTNSRSFLGKVCL 92
            +L  L +E Y  +  G  +   F+G+V +
Sbjct: 61 -PELAELEIEVYDKDRFGRDD---FIGQVTI 87

Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotagmins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles. Length = 101

>gnl|CDD|176022 cd08376, C2B_MCTP_PRT, C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

 Score = 71.1 bits (175), Expect = 8e-15
 Identities = 40/113 (35%), Positives = 60/113 (53%), Gaps = 15/113 (13%)

Query: 436 VRVNVVEAQDLVPTEKNHFPDVYVKAQIGNQVLKTKICQARTLSAVWNE--DLLFVAAEP 493
           V + +VE ++L P + N   D YVK ++GN+  K+K+C ++TL+  W E  DL       
Sbjct: 2   VTIVLVEGKNLPPMDDNGLSDPYVKFRLGNEKYKSKVC-SKTLNPQWLEQFDLHL----- 55

Query: 494 FEDH---LVLTVEDRVGPGKDEIIGRVIIPLSAIEKRADERIIHSRWFNLEKP 543
           F+D    L + V D+    KDE IGR  I LSA+ +  ++   HS    LE  
Sbjct: 56  FDDQSQILEIEVWDKDTGKKDEFIGRCEIDLSALPR--EQT--HSLELELEDG 104

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 116

>gnl|CDD|176001 cd04036, C2_cPLA2, C2 domain present in cytosolic PhosphoLipase A2 (cPLA2)

 Score = 69.2 bits (170), Expect = 4e-14
 Identities = 31/92 (33%), Positives = 52/92 (56%), Gaps = 3/92 (3%)

Query: 272 LYVRVVKARELPAMDLTGSIDPFVEVKI---GNYKGITKHYEKNQNPQWHQVFAFSRDRM 328
           L VRV++A  +   DL  + D +VE+ +    + K  TK  + + NP W++ F F     
Sbjct: 2   LTVRVLRATNITKGDLLSTPDCYVELWLPTASDEKKRTKTIKNSINPVWNETFEFRIQSQ 61

Query: 329 QASVLEVVIKDKDLVKDDFVGIVRFDINEVPL 360
             +VLE+ + D+D V DD +G V FD++++ L
Sbjct: 62  VKNVLELTVMDEDYVMDDHLGTVLFDVSKLKL 93

A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members of this cd have a type-II topology. Length = 119

>gnl|CDD|175975 cd00276, C2B_Synaptotagmin, C2 domain second repeat present in Synaptotagmin

 Score = 69.1 bits (170), Expect = 7e-14
 Identities = 31/97 (31%), Positives = 53/97 (54%), Gaps = 7/97 (7%)

Query: 5   KLGVQVVGAHNLLPKDGKGSSSAFV--ELYFDGQR---FRTTIKENDLNPVWNESFYFNI 59
           +L V V+ A NL P DGKG S  +V   L   G++    +T++K+  LNPV+NE+F F++
Sbjct: 15  RLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFDV 74

Query: 60  SDASKLHYLTLEAYIYNNIGDTNSRSFLGKVCLTGNS 96
               +L  ++L   + +      +   +G+V L  +S
Sbjct: 75  PAE-QLEEVSLVITVVDKDSVGRNE-VIGQVVLGPDS 109

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 134

>gnl|CDD|215765 pfam00168, C2, C2 domain

 Score = 66.5 bits (163), Expect = 1e-13
 Identities = 28/94 (29%), Positives = 45/94 (47%), Gaps = 13/94 (13%)

Query: 598 LELGILNAVGLHPMKTRDGRGTSDTYCVAKYGHKWV---RTRTLVDNLSPKYNEQYTWEV 654
           L + +++A  L P    D  G SD Y     G +     +T+ + + L+P +NE +T+EV
Sbjct: 1   LRVTVISAKNLPPK---DLNGKSDPYVKVSLGGQKKDTKKTKVVKNTLNPVWNETFTFEV 57

Query: 655 FDP-ATVLTVGVFDNSQLGEKSNGNKDLKIGKVR 687
             P    L + V+D  + G      KD  IG+V 
Sbjct: 58  TLPELAELRIEVYDYDRFG------KDDFIGEVT 85

Length = 85

>gnl|CDD|175973 cd00030, C2, C2 domain

 Score = 66.3 bits (162), Expect = 3e-13
 Identities = 33/111 (29%), Positives = 53/111 (47%), Gaps = 12/111 (10%)

Query: 598 LELGILNAVGLHPMKTRDGRGTSDTYCVAKYG-HKWVRTRTLVDNLSPKYNEQYTWEVFD 656
           L + ++ A  L      D  G SD Y     G  +  +T+ + + L+P +NE + + V D
Sbjct: 1   LRVTVIEARNLPAK---DLNGKSDPYVKVSLGGKQKFKTKVVKNTLNPVWNETFEFPVLD 57

Query: 657 PAT-VLTVGVFDNSQLGEKSNGNKDLKIGKVRIRISTLE-TGRIYTHSYPL 705
           P +  LTV V+D      K   +KD  +G+V I +S L  +G+      PL
Sbjct: 58  PESDTLTVEVWD------KDRFSKDDFLGEVEIPLSELLDSGKEGELWLPL 102

The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 102

>gnl|CDD|176070 cd08688, C2_KIAA0528-like, C2 domain found in the Human KIAA0528 cDNA clone

 Score = 64.6 bits (158), Expect = 2e-12
 Identities = 35/90 (38%), Positives = 49/90 (54%), Gaps = 5/90 (5%)

Query: 272 LYVRVVKARELPAMD-LTGSIDPFVEVKIGNYKGITKHYEKNQNPQWH-QVFAFSRD--R 327
           L VRVV AR+LP MD  +   D FVEVK G+    T   +K+ NP W+ + F F  D   
Sbjct: 1   LKVRVVAARDLPVMDRSSDLTDAFVEVKFGSTTYKTDVVKKSLNPVWNSEWFRFEVDDEE 60

Query: 328 MQASVLEVVIKDKDLV-KDDFVGIVRFDIN 356
           +Q   L++ + D D    +D +G V  D+N
Sbjct: 61  LQDEPLQIRVMDHDTYSANDAIGKVYIDLN 90

The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 110

>gnl|CDD|175989 cd04022, C2A_MCTP_PRT_plant, C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

 Score = 62.4 bits (152), Expect = 1e-11
 Identities = 39/129 (30%), Positives = 60/129 (46%), Gaps = 12/129 (9%)

Query: 272 LYVRVVKARELPAMDLTGSIDPFVEVKIGNYKGITKHYEKNQNPQWHQVFAFS---RDRM 328
           L V VV A++L   D  GS   +VE+     K  T+   K+ NP W++   F+     R+
Sbjct: 2   LVVEVVDAQDLMPKDGQGSSSAYVELDFDGQKKRTRTKPKDLNPVWNEKLVFNVSDPSRL 61

Query: 329 QASVLEVVIKDK--DLVKDDFVGIVRFDINEVPLRVPPDSPLAPEWYRLEDKKG--EKIK 384
              VLEV + +      +  F+G VR           P S    + Y LE K+G   +++
Sbjct: 62  SNLVLEVYVYNDRRSGRRRSFLGRVRISGTS----FVPPSEAVVQRYPLE-KRGLFSRVR 116

Query: 385 GELMLAVWI 393
           GE+ L V+I
Sbjct: 117 GEIGLKVYI 125

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 127

>gnl|CDD|214577 smart00239, C2, Protein kinase C conserved region 2 (CalB)

 Score = 62.1 bits (151), Expect = 1e-11
 Identities = 30/104 (28%), Positives = 47/104 (45%), Gaps = 13/104 (12%)

Query: 597 ILELGILNAVGLHPMKTRDGRGTSDTYCVAKYGH---KWVRTRTLVDNLSPKYNEQYTWE 653
            L + I++A  L P    D  G SD Y          +  +T+ + + L+P +NE + +E
Sbjct: 1   TLTVKIISARNLPPK---DKGGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFE 57

Query: 654 VFDPAT-VLTVGVFDNSQLGEKSNGNKDLKIGKVRIRISTLETG 696
           V  P    L + V+D      K    +D  IG+V I +S L  G
Sbjct: 58  VPPPELAELEIEVYD------KDRFGRDDFIGQVTIPLSDLLLG 95

Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotagmins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles. Length = 101

>gnl|CDD|175997 cd04031, C2A_RIM1alpha, C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins

 Score = 61.9 bits (151), Expect = 2e-11
 Identities = 38/114 (33%), Positives = 58/114 (50%), Gaps = 15/114 (13%)

Query: 272 LYVRVVKARELPAMDLTGSIDPFVEVKI-----GNYKGITKHYEKNQNPQWHQVFAFS-- 324
           L V V++AR+LP  D     +P+V+V +        K  TK  +K  NP+W+Q F +S  
Sbjct: 18  LIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQTFEYSNV 77

Query: 325 -RDRMQASVLEVVIKDKDLVK-DDFVGIVRFDINEVPLRVPPDSPLAPEWYRLE 376
            R+ ++   LEV + D D    +DF+G V  D+ +  L    D    P WY L+
Sbjct: 78  RRETLKERTLEVTVWDYDRDGENDFLGEVVIDLADALL----DD--EPHWYPLQ 125

RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology and do not bind Ca2+. Length = 125

>gnl|CDD|175991 cd04025, C2B_RasA1_RasA4, C2 domain second repeat present in RasA1 and RasA4

 Score = 61.7 bits (150), Expect = 2e-11
 Identities = 38/106 (35%), Positives = 52/106 (49%), Gaps = 8/106 (7%)

Query: 272 LYVRVVKARELPAMDLTGSIDPFVEVKIGNYKGITKHYEKNQNPQWHQVFAFSRDRMQAS 331
           L   V++AR+L   D  G+ DPFV V        T   +K+  P+W++VF F       S
Sbjct: 2   LRCHVLEARDLAPKDRNGTSDPFVRVFYNGQTLETSVVKKSCYPRWNEVFEFELMEGADS 61

Query: 332 VLEVVIKDKDLV-KDDFVGIVRFDINEVPLRVPPDSPLAPE-WYRL 375
            L V + D DLV K+DF+G V F I    L+         E W+RL
Sbjct: 62  PLSVEVWDWDLVSKNDFLGKVVFSIQ--TLQQAK----QEEGWFRL 101

RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 123

>gnl|CDD|176022 cd08376, C2B_MCTP_PRT, C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

 Score = 61.1 bits (149), Expect = 3e-11
 Identities = 31/86 (36%), Positives = 49/86 (56%), Gaps = 1/86 (1%)

Query: 276 VVKARELPAMDLTGSIDPFVEVKIGNYKGITKHYEKNQNPQWHQVFAFSRDRMQASVLEV 335
           +V+ + LP MD  G  DP+V+ ++GN K  +K   K  NPQW + F       Q+ +LE+
Sbjct: 6   LVEGKNLPPMDDNGLSDPYVKFRLGNEKYKSKVCSKTLNPQWLEQFDLHLFDDQSQILEI 65

Query: 336 VIKDKD-LVKDDFVGIVRFDINEVPL 360
            + DKD   KD+F+G    D++ +P 
Sbjct: 66  EVWDKDTGKKDEFIGRCEIDLSALPR 91

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 116

>gnl|CDD|175975 cd00276, C2B_Synaptotagmin, C2 domain second repeat present in Synaptotagmin

 Score = 61.4 bits (150), Expect = 3e-11
 Identities = 33/92 (35%), Positives = 54/92 (58%), Gaps = 6/92 (6%)

Query: 438 VNVVEAQDLVPTEKNHFPDVYVKAQI--GNQVLKTK--ICQARTLSAVWNEDLLF-VAAE 492
           V V++A++L P++     D YVK  +  G + LK K    +  TL+ V+NE   F V AE
Sbjct: 18  VVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFDVPAE 77

Query: 493 PFED-HLVLTVEDRVGPGKDEIIGRVIIPLSA 523
             E+  LV+TV D+   G++E+IG+V++   +
Sbjct: 78  QLEEVSLVITVVDKDSVGRNEVIGQVVLGPDS 109

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 134

>gnl|CDD|176064 cd08682, C2_Rab11-FIP_classI, C2 domain found in Rab11-family interacting proteins (FIP) class I

 Score = 61.3 bits (149), Expect = 3e-11
 Identities = 36/111 (32%), Positives = 58/111 (52%), Gaps = 8/111 (7%)

Query: 436 VRVNVVEAQDLVPTEKNHFPDVYVKAQIGNQVLKTKICQARTLSAVWNEDLLF-----VA 490
           V+V V++A+ L+   K+   D YV  Q+G +   T + + +T S VW E+  F     ++
Sbjct: 1   VQVTVLQARGLLCKGKSGTNDAYVIIQLGKEKYSTSVKE-KTTSPVWKEECSFELPGLLS 59

Query: 491 AEPFEDHLVLTVEDRVGPGKDEIIGRVIIPLSAIEKRADERIIHSRWFNLE 541
                  L LTV  R   G D+ +G+V IPL+ +++    R   +RWF LE
Sbjct: 60  GNGNRATLQLTVMHRNLLGLDKFLGQVSIPLNDLDEDKGRRR--TRWFKLE 108

Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The members in this CD are class I FIPs. The exact function of the Rab11 and FIP interaction is unknown, but there is speculation that it involves the role of forming a targeting complex that recruits a group of proteins involved in membrane transport to organelles. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 126

>gnl|CDD|176032 cd08386, C2A_Synaptotagmin-7, C2A domain first repeat present in Synaptotagmin 7

 Score = 60.4 bits (147), Expect = 6e-11
 Identities = 34/100 (34%), Positives = 56/100 (56%), Gaps = 7/100 (7%)

Query: 272 LYVRVVKARELPAMDLTGSIDPFVEVKI---GNYKGITKHYEKNQNPQWHQVFAF---SR 325
           L ++++KA ELPA D +G+ DPFV++ +     +K  TK   KN NP W++ F F     
Sbjct: 18  LTLKILKAVELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPY 77

Query: 326 DRMQASVLEVVIKDKD-LVKDDFVGIVRFDINEVPLRVPP 364
           +++Q  VL + + D D   ++D +G V   +N+V L    
Sbjct: 78  EKLQQRVLYLQVLDYDRFSRNDPIGEVSLPLNKVDLTEEQ 117

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 125

>gnl|CDD|176037 cd08391, C2A_C2C_Synaptotagmin_like, C2 domain first and third repeat in Synaptotagmin-like proteins

 Score = 58.1 bits (141), Expect = 4e-10
 Identities = 36/119 (30%), Positives = 61/119 (51%), Gaps = 11/119 (9%)

Query: 272 LYVRVVKARELPAMD------LTGSIDPFVEVKIGNYKGITKHYEKNQNPQWHQVFAFSR 325
           L + V++A++L A D      + G  DP+V V++G     +K  ++N NP+W++V+    
Sbjct: 3   LRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGAQTFKSKVIKENLNPKWNEVYEAVV 62

Query: 326 DRMQASVLEVVIKDKDLVKDDFVGIVRFDINEVPLRVPPDSPLAPEWYRLEDKKGEKIK 384
           D +    LE+ + D+D  KDDF+G +  D+  V            EW  LED K  ++ 
Sbjct: 63  DEVPGQELEIELFDEDPDKDDFLGRLSIDLGSV-----EKKGFIDEWLPLEDVKSGRLH 116

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains either the first or third repeat in Synaptotagmin-like proteins with a type-I topology. Length = 121

>gnl|CDD|176021 cd08375, C2_Intersectin, C2 domain present in Intersectin

 Score = 56.6 bits (137), Expect = 2e-09
 Identities = 32/95 (33%), Positives = 48/95 (50%), Gaps = 1/95 (1%)

Query: 436 VRVNVVEAQDLVPTEKNHFPDVYVKAQIGNQVLKTKICQARTLSAVWNEDLLFVAAEPFE 495
           + V +VE +DL P   N   D Y +  +G+Q  KTK+    TL+  WN  + F   +  +
Sbjct: 17  LMVVIVEGRDLKPCNSNGKSDPYCEVSMGSQEHKTKVVSD-TLNPKWNSSMQFFVKDLEQ 75

Query: 496 DHLVLTVEDRVGPGKDEIIGRVIIPLSAIEKRADE 530
           D L +TV DR     D+ +GR  I ++ I K   E
Sbjct: 76  DVLCITVFDRDFFSPDDFLGRTEIRVADILKETKE 110

A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. The members here have topology I. Length = 136

>gnl|CDD|175990 cd04024, C2A_Synaptotagmin-like, C2 domain first repeat present in Synaptotagmin-like proteins

 Score = 55.9 bits (135), Expect = 2e-09
 Identities = 32/125 (25%), Positives = 57/125 (45%), Gaps = 8/125 (6%)

Query: 271 FLYVRVVKARELPAMDL--TGSIDPFVEVKIGNYKGITKHYEKNQNPQWHQVFAFSRDRM 328
            L V VV+A++L A D    G  DP+  + +G  +  T+      NP+W+    F     
Sbjct: 2   VLRVHVVEAKDLAAKDRSGKGKSDPYAILSVGAQRFKTQTIPNTLNPKWNYWCEFPIFSA 61

Query: 329 QASVLEVVIKDKD-LVKDDFVGIVRFDINEVPLRVPPDSPLAPEWYRLEDKKGEK---IK 384
           Q  +L++++ DKD     D++G     + EV       +  + +W  L+  +  K   + 
Sbjct: 62  QNQLLKLILWDKDRFAGKDYLGEFDIALEEV--FADGKTGQSDKWITLKSTRPGKTSVVS 119

Query: 385 GELML 389
           GE+ L
Sbjct: 120 GEIHL 124

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 128

>gnl|CDD|175993 cd04027, C2B_Munc13, C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins

 Score = 55.7 bits (134), Expect = 3e-09
 Identities = 41/129 (31%), Positives = 62/129 (48%), Gaps = 9/129 (6%)

Query: 5   KLGVQVVGAHNLLPKDGKGSSSAFVELYFDGQRFRTTIKENDLNPVWNESFYF---NISD 61
           K+ + VV A  L+ KD  G+S  +V +     + RT     +LNPVWNE F+F   N SD
Sbjct: 2   KISITVVCAQGLIAKDKTGTSDPYVTVQVGKTKKRTKTIPQNLNPVWNEKFHFECHNSSD 61

Query: 62  ASKLHYLTLEAYIYNNIGDTNSRS---FLGKVCLTGNSFVPLSDSVVLHYPLEKRGIFSH 118
             K+     +  I + +    +R    FLG+  +   +   LS  + + Y LEKR   S 
Sbjct: 62  RIKVRVWDEDDDIKSRLKQKFTRESDDFLGQTIIEVRT---LSGEMDVWYNLEKRTDKSA 118

Query: 119 VRGELGLKV 127
           V G + L +
Sbjct: 119 VSGAIRLHI 127

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 127

>gnl|CDD|175992 cd04026, C2_PKC_alpha_gamma, C2 domain in Protein Kinase C (PKC) alpha and gamma

 Score = 55.7 bits (135), Expect = 3e-09
 Identities = 27/72 (37%), Positives = 40/72 (55%), Gaps = 5/72 (6%)

Query: 5  KLGVQVVGAHNLLPKDGKGSSSAFVELYF-----DGQRFRTTIKENDLNPVWNESFYFNI 59
          KL V+V  A NL+P D  G S  +V+L       +  + +T   +  LNPVWNE+F F++
Sbjct: 14 KLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFDL 73

Query: 60 SDASKLHYLTLE 71
            A K   L++E
Sbjct: 74 KPADKDRRLSIE 85

A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology. Length = 131

>gnl|CDD|175976 cd04009, C2B_Munc13-like, C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins

 Score = 55.7 bits (135), Expect = 3e-09
 Identities = 33/123 (26%), Positives = 50/123 (40%), Gaps = 19/123 (15%)

Query: 5   KLGVQVVGAHNLLPKDGKGSSSAFVELY------FDGQRFRTT-IKENDLNPVWNESFYF 57
            L V+++ A NLLP D  GSS  FV++       F       T +K+  L P+++ESF F
Sbjct: 17  SLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEF 76

Query: 58  NISDASKLHY---LTLEAYIYNNIGDTNSRSFLGKVCLTGNSFVPLSDSVVLHYPLEKRG 114
           N+           L      Y+          LG     G +F+PL+D   +      +G
Sbjct: 77  NVPPEQCSVEGALLLFTVKDYD---------LLGSNDFEGEAFLPLNDIPGVEDTSSAQG 127

Query: 115 IFS 117
              
Sbjct: 128 FGP 130

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 133

>gnl|CDD|176023 cd08377, C2C_MCTP_PRT, C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

 Score = 55.4 bits (134), Expect = 4e-09
 Identities = 32/86 (37%), Positives = 40/86 (46%), Gaps = 7/86 (8%)

Query: 6  LGVQVVGAHNLLPKDGKGSSSAFVELYFDGQRFRT-TIKENDLNPVWNESFYFNISDASK 64
          L V+V+ A  L   D  G S  F  L     R +T TI +  LNP WN+ F F I D   
Sbjct: 3  LQVKVIRASGLAAADIGGKSDPFCVLELVNARLQTHTIYKT-LNPEWNKIFTFPIKDI-- 59

Query: 65 LHYLTLEAYIYNNIGDTNSRSFLGKV 90
            +  LE  +Y+   D     FLGKV
Sbjct: 60 --HDVLEVTVYDEDKD-KKPEFLGKV 82

MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 119

>gnl|CDD|176037 cd08391, C2A_C2C_Synaptotagmin_like, C2 domain first and third repeat in Synaptotagmin-like proteins

 Score = 55.4 bits (134), Expect = 4e-09
 Identities = 43/136 (31%), Positives = 65/136 (47%), Gaps = 28/136 (20%)

Query: 436 VRVNVVEAQDLVPTEKNHFP------DVYVKAQIGNQVLKTKICQARTLSAVWNEDLLFV 489
           +R++V+EAQDLV  +K          D YV  ++G Q  K+K+ +   L+  WNE  ++ 
Sbjct: 3   LRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGAQTFKSKVIK-ENLNPKWNE--VYE 59

Query: 490 AAEPFEDHLVLTVE--DRVGPGKDEIIGRVIIPLSAIEKRADERIIHSRWFNLEKPVAVD 547
           A         L +E  D   P KD+ +GR+ I L ++EK   +  I   W  LE     D
Sbjct: 60  AVVDEVPGQELEIELFDE-DPDKDDFLGRLSIDLGSVEK---KGFIDE-WLPLE-----D 109

Query: 548 VDQLKKEKFSSRIHLR 563
           V        S R+HL+
Sbjct: 110 VK-------SGRLHLK 118

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains either the first or third repeat in Synaptotagmin-like proteins with a type-I topology. Length = 121

>gnl|CDD|176003 cd04038, C2_ArfGAP, C2 domain present in Arf GTPase Activating Proteins (GAP)

 Score = 55.0 bits (133), Expect = 8e-09
 Identities = 33/86 (38%), Positives = 44/86 (51%), Gaps = 3/86 (3%)

Query: 271 FLYVRVVKARELPAMDLTGSIDPFVEVKIGNYKGITKHYEKNQNPQWHQVFAFS-RDRMQ 329
            L VRVV+   L   D T S DP+V + +GN K  T+  +KN NP W++    S  + M 
Sbjct: 3   LLKVRVVRGTNLAVRDFTSS-DPYVVLTLGNQKVKTRVIKKNLNPVWNEELTLSVPNPMA 61

Query: 330 ASVLEVVIKDKDLVKDDFVGIVRFDI 355
              LEV  KD    KDD +G    D+
Sbjct: 62  PLKLEVFDKDT-FSKDDSMGEAEIDL 86

ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 145

>gnl|CDD|176000 cd04035, C2A_Rabphilin_Doc2, C2 domain first repeat present in Rabphilin and Double C2 domain

 Score = 53.4 bits (129), Expect = 1e-08
 Identities = 25/90 (27%), Positives = 49/90 (54%), Gaps = 8/90 (8%)

Query: 272 LYVRVVKARELPAMDLTGSIDPFVEVKI--GNYKG---ITKHYEKNQNPQWHQVFAF--- 323
           L+  +++A+ L AMD  G  DP+V++ +  G  K     TK   K +NP++++   +   
Sbjct: 17  LHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTYYGI 76

Query: 324 SRDRMQASVLEVVIKDKDLVKDDFVGIVRF 353
           + + +Q   L +++ D+D   +DF+G  R 
Sbjct: 77  TEEDIQRKTLRLLVLDEDRFGNDFLGETRI 106

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 123

>gnl|CDD|176005 cd04040, C2D_Tricalbin-like, C2 domain fourth repeat present in Tricalbin-like proteins

 Score = 53.3 bits (129), Expect = 2e-08
 Identities = 28/70 (40%), Positives = 39/70 (55%), Gaps = 4/70 (5%)

Query: 6  LGVQVVGAHNLLPKDGKGSSSAFVELYFDGQR-FRTTIKENDLNPVWNESFYFNISDASK 64
          L V V+ A NL   D  G S  FV+ Y +G++ F+T   +  LNPVWNESF   +   S+
Sbjct: 1  LTVDVISAENLPSADRNGKSDPFVKFYLNGEKVFKTKTIKKTLNPVWNESFEVPV--PSR 58

Query: 65 LH-YLTLEAY 73
          +   L +E Y
Sbjct: 59 VRAVLKVEVY 68

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fifth C2 repeat, C2E, and has a type-II topology. Length = 115

>gnl|CDD|176007 cd04042, C2A_MCTP_PRT, C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

 Score = 53.0 bits (128), Expect = 2e-08
 Identities = 39/124 (31%), Positives = 59/124 (47%), Gaps = 12/124 (9%)

Query: 272 LYVRVVKARELPAMDLTGSIDPFVEVKIGN---YKGITKHYEKNQNPQWHQVFAFS-RDR 327
           L + + + R L A D  G+ DP+V+ K G    YK  T +  KN NP W + F     D 
Sbjct: 2   LDIHLKEGRNLAARDRGGTSDPYVKFKYGGKTVYKSKTIY--KNLNPVWDEKFTLPIEDV 59

Query: 328 MQASVLEVVIKDKDLVKDDFVGIVRFDINEVPLRVPPDSPLAPEWYRLEDKKGEKIKGEL 387
            Q   ++V   D+ L  DDF+G    D++ + L  P +  L     +LED   ++  G +
Sbjct: 60  TQPLYIKVFDYDRGLT-DDFMGSAFVDLSTLELNKPTEVKL-----KLEDPNSDEDLGYI 113

Query: 388 MLAV 391
            L V
Sbjct: 114 SLVV 117

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 121

>gnl|CDD|176032 cd08386, C2A_Synaptotagmin-7, C2A domain first repeat present in Synaptotagmin 7

 Score = 52.7 bits (127), Expect = 3e-08
 Identities = 23/71 (32%), Positives = 34/71 (47%), Gaps = 3/71 (4%)

Query: 3  NLKLGVQVVGAHNLLPKDGKGSSSAFVELYF---DGQRFRTTIKENDLNPVWNESFYFNI 59
             L ++++ A  L  KD  G+S  FV++Y       +  T +K  +LNP WNE+F F  
Sbjct: 15 ESTLTLKILKAVELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEG 74

Query: 60 SDASKLHYLTL 70
              KL    L
Sbjct: 75 FPYEKLQQRVL 85

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 125

>gnl|CDD|176050 cd08405, C2B_Synaptotagmin-7, C2 domain second repeat present in Synaptotagmin 7

 Score = 53.2 bits (128), Expect = 3e-08
 Identities = 37/123 (30%), Positives = 63/123 (51%), Gaps = 23/123 (18%)

Query: 272 LYVRVVKARELPAMDLTGSIDPFVEVKIGNYKGITKHYEK--------NQNPQWHQVFAF 323
           + V ++KAR L AMD+ G+ DP+V+V +  YK   K  EK          NP +++ F F
Sbjct: 17  ITVNIIKARNLKAMDINGTSDPYVKVWL-MYKD--KRVEKKKTVIKKRTLNPVFNESFIF 73

Query: 324 S--RDRMQASVLEVVIKDKD-LVKDDFVGIVRFDINEVPLRVP--------PDSPLAPEW 372
           +   +R++ + L + + DKD L ++D +G +        L +         P  P+A +W
Sbjct: 74  NIPLERLRETTLIITVMDKDRLSRNDLIGKIYLGWKSGGLELKHWKDMLSKPRQPVA-QW 132

Query: 373 YRL 375
           +RL
Sbjct: 133 HRL 135

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136

>gnl|CDD|176015 cd04050, C2B_Synaptotagmin-like, C2 domain second repeat present in Synaptotagmin-like proteins

 Score = 51.8 bits (125), Expect = 4e-08
 Identities = 24/88 (27%), Positives = 41/88 (46%), Gaps = 6/88 (6%)

Query: 455 PDVYVKAQIGNQVLKTKICQARTLSAVWNEDLLFVAAEPFEDHLVLTVEDRVGPGKDEII 514
           P  YV+  +G    K+K+ + RT + VW E   F+   P    L + V+D       + +
Sbjct: 21  PSPYVELTVGKTTQKSKVKE-RTNNPVWEEGFTFLVRNPENQELEIEVKDD---KTGKSL 76

Query: 515 GRVIIPLSAIEKRADERIIHSRWFNLEK 542
           G + +PLS + K  D  +   + F L+ 
Sbjct: 77  GSLTLPLSELLKEPDLTL--DQPFPLDN 102

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 105

>gnl|CDD|176057 cd08675, C2B_RasGAP, C2 domain second repeat of Ras GTPase activating proteins (GAPs)

 Score = 52.8 bits (127), Expect = 4e-08
 Identities = 30/124 (24%), Positives = 49/124 (39%), Gaps = 26/124 (20%)

Query: 272 LYVRVVKARELPAMDLTGSIDPFVEVK-IGNYKGITKHYE---KNQNPQWHQVFAF---- 323
           L VRV++ R+L      G+ DPF  V    + K  TK  +   K  NP++ + F F    
Sbjct: 1   LSVRVLECRDLALKS-NGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTI 59

Query: 324 --SRDRMQ-------ASVLEVVIKDKD---LVKDDFVGIVRFDINEVPLRVPPDSPLAPE 371
             S ++             E+ ++      +  DDF+G VR  +  +       +     
Sbjct: 60  GFSYEKKSFKVEEEDLEKSELRVELWHASMVSGDDFLGEVRIPLQGLQQAGSHQA----- 114

Query: 372 WYRL 375
           WY L
Sbjct: 115 WYFL 118

RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology. Length = 137

>gnl|CDD|175975 cd00276, C2B_Synaptotagmin, C2 domain second repeat present in Synaptotagmin

 Score = 52.2 bits (126), Expect = 5e-08
 Identities = 28/92 (30%), Positives = 46/92 (50%), Gaps = 12/92 (13%)

Query: 272 LYVRVVKARELPAMDLTGSIDPFVEV-------KIGNYKGITKHYEKNQNPQWHQVFAF- 323
           L V V+KAR LP  D  G  DP+V+V       K+   K   K      NP +++ F+F 
Sbjct: 16  LTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKK--GTLNPVFNEAFSFD 73

Query: 324 -SRDRMQASVLEVVIKDKDLV-KDDFVGIVRF 353
              ++++   L + + DKD V +++ +G V  
Sbjct: 74  VPAEQLEEVSLVITVVDKDSVGRNEVIGQVVL 105

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 134

>gnl|CDD|176031 cd08385, C2A_Synaptotagmin-1-5-6-9-10, C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10

 Score = 51.9 bits (125), Expect = 5e-08
 Identities = 35/111 (31%), Positives = 53/111 (47%), Gaps = 11/111 (9%)

Query: 272 LYVRVVKARELPAMDLTGSIDPFVEVKIGN---YKGITKHYEKNQNPQWHQVFAFS--RD 326
           L V +++A +LPAMD+ G+ DP+V+V +      K  TK + K  NP +++ F F     
Sbjct: 18  LTVGIIQAADLPAMDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFTFKVPYS 77

Query: 327 RMQASVLEVVIKDKD-LVKDDFVGIVRFDINEVPLRVPPDSPLAPEWYRLE 376
            +    L   + D D   K D +G VR  +  V L       +  EW  LE
Sbjct: 78  ELGNKTLVFSVYDFDRFSKHDLIGEVRVPLLTVDL-----GHVTEEWRDLE 123

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 124

>gnl|CDD|175999 cd04033, C2_NEDD4_NEDD4L, C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42)

 Score = 52.4 bits (126), Expect = 5e-08
 Identities = 37/133 (27%), Positives = 60/133 (45%), Gaps = 17/133 (12%)

Query: 6   LGVQVVGAHNLLPKDGKGSSSAFVEL-YFDGQR------FRTTIKENDLNPVWNESFYFN 58
           L V+V+   +L  KD  G+S  +V++  +D          +T   +  LNP WNE F+F 
Sbjct: 2   LRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFR 61

Query: 59  ISDASKLHYLTLEAYIYNNIGDTNSRSFLGKVCLTGNSFV---PLSDSVVLH--YPLEKR 113
           + +  + H L  E +  N +   +   FLG+V +  N+     P ++       Y L  R
Sbjct: 62  V-NPRE-HRLLFEVFDENRLTRDD---FLGQVEVPLNNLPTETPGNERRYTFKDYLLRPR 116

Query: 114 GIFSHVRGELGLK 126
              S V+G L L 
Sbjct: 117 SSKSRVKGHLRLY 129

Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 133

>gnl|CDD|176050 cd08405, C2B_Synaptotagmin-7, C2 domain second repeat present in Synaptotagmin 7

 Score = 52.4 bits (126), Expect = 6e-08
 Identities = 30/98 (30%), Positives = 50/98 (51%), Gaps = 11/98 (11%)

Query: 6   LGVQVVGAHNLLPKDGKGSSSAFVELY--FDGQRF---RTTIKENDLNPVWNESFYFNIS 60
           + V ++ A NL   D  G+S  +V+++  +  +R    +T IK+  LNPV+NESF FNI 
Sbjct: 17  ITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFNESFIFNIP 76

Query: 61  DASKLHYLTLEAYI--YNNIGDTNSRSFLGKVCLTGNS 96
              +L   TL   +   + +   +    +GK+ L   S
Sbjct: 77  -LERLRETTLIITVMDKDRLSRND---LIGKIYLGWKS 110

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136

>gnl|CDD|176005 cd04040, C2D_Tricalbin-like, C2 domain fourth repeat present in Tricalbin-like proteins

 Score = 51.4 bits (124), Expect = 7e-08
 Identities = 30/91 (32%), Positives = 46/91 (50%), Gaps = 6/91 (6%)

Query: 272 LYVRVVKARELPAMDLTGSIDPFVEVKIGN---YKGITKHYEKNQNPQWHQVFAFSRDRM 328
           L V V+ A  LP+ D  G  DPFV+  +     +K  TK  +K  NP W++ F       
Sbjct: 1   LTVDVISAENLPSADRNGKSDPFVKFYLNGEKVFK--TKTIKKTLNPVWNESFEVPVPSR 58

Query: 329 QASVLEVVIKDKDLV-KDDFVGIVRFDINEV 358
             +VL+V + D D   KDD +G    D++++
Sbjct: 59  VRAVLKVEVYDWDRGGKDDLLGSAYIDLSDL 89

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fifth C2 repeat, C2E, and has a type-II topology. Length = 115

>gnl|CDD|176002 cd04037, C2E_Ferlin, C2 domain fifth repeat in Ferlin

 Score = 51.8 bits (125), Expect = 7e-08
 Identities = 28/87 (32%), Positives = 45/87 (51%), Gaps = 5/87 (5%)

Query: 274 VR--VVKARELPAMDLTGSIDPFVEVKIGNYK-GITKHYEKNQ-NPQWHQVFAFSRDRMQ 329
           VR  VV+AR L   D  G  DP++++K+G  K     +Y  N  NP + ++F        
Sbjct: 2   VRVYVVRARNLQPKDPNGKSDPYLKIKLGKKKINDRDNYIPNTLNPVFGKMFELEATLPG 61

Query: 330 ASVLEVVIKDKDLV-KDDFVGIVRFDI 355
            S+L++ + D DL+  DD +G    D+
Sbjct: 62  NSILKISVMDYDLLGSDDLIGETVIDL 88

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fifth C2 repeat, C2E, and has a type-II topology. Length = 124

>gnl|CDD|176011 cd04046, C2_Calpain, C2 domain present in Calpain proteins

 Score = 51.5 bits (124), Expect = 7e-08
 Identities = 32/129 (24%), Positives = 58/129 (44%), Gaps = 13/129 (10%)

Query: 8   VQVVGAHNLLPKDGKGSSSAFVELYFDGQRFRTTIKENDLNPVWNESFYFNISDASKLHY 67
           V V  A  L  +D  G +  +V +  +G+  R+ ++++ L+P ++    F          
Sbjct: 7   VHVHSAEGLSKQDSGGGADPYVIIKCEGESVRSPVQKDTLSPEFDTQAIFYRKKPRSP-- 64

Query: 68  LTLEAYIYNNIGDTNSRSFLGKVCLTGNSFVPLSDSVVLH-YPLEKRG--IFSHVRGELG 124
           + ++ +  N + D     FLG+  L+ +     +DS  L   PL KRG      V G + 
Sbjct: 65  IKIQVWNSNLLCD----EFLGQATLSAD----PNDSQTLRTLPLRKRGRDAAGEVPGTIS 116

Query: 125 LKVYITDDP 133
           +KV  +DD 
Sbjct: 117 VKVTSSDDL 125

A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 126

>gnl|CDD|176003 cd04038, C2_ArfGAP, C2 domain present in Arf GTPase Activating Proteins (GAP)

 Score = 51.9 bits (125), Expect = 9e-08
 Identities = 20/50 (40%), Positives = 30/50 (60%)

Query: 618 GTSDTYCVAKYGHKWVRTRTLVDNLSPKYNEQYTWEVFDPATVLTVGVFD 667
            +SD Y V   G++ V+TR +  NL+P +NE+ T  V +P   L + VFD
Sbjct: 20  TSSDPYVVLTLGNQKVKTRVIKKNLNPVWNEELTLSVPNPMAPLKLEVFD 69

ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 145

>gnl|CDD|176023 cd08377, C2C_MCTP_PRT, C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

 Score = 50.8 bits (122), Expect = 1e-07
 Identities = 31/110 (28%), Positives = 56/110 (50%), Gaps = 11/110 (10%)

Query: 596 GILELGILNAVGLHPMKTRDGRGTSDTYCVAKYGHKWVRTRTLVDNLSPKYNEQYTWEVF 655
           G L++ ++ A GL      D  G SD +CV +  +  ++T T+   L+P++N+ +T+ + 
Sbjct: 1   GFLQVKVIRASGL---AAADIGGKSDPFCVLELVNARLQTHTIYKTLNPEWNKIFTFPIK 57

Query: 656 DPATVLTVGVFDNSQLGEKSNGNKDLKIGKVRIRISTLETGRIYTHSYPL 705
           D   VL V V+D     E  +   +  +GKV I + +++ G      Y L
Sbjct: 58  DIHDVLEVTVYD-----EDKDKKPEF-LGKVAIPLLSIKNGE--RKWYAL 99

MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 119

>gnl|CDD|175992 cd04026, C2_PKC_alpha_gamma, C2 domain in Protein Kinase C (PKC) alpha and gamma

 Score = 51.5 bits (124), Expect = 1e-07
 Identities = 38/120 (31%), Positives = 64/120 (53%), Gaps = 18/120 (15%)

Query: 272 LYVRVVKARELPAMDLTGSIDPFVEVKI-----GNYKGITKHYEKNQNPQWHQVFAF--- 323
           L V V +A+ L  MD  G  DP+V++K+        K  TK  +K  NP W++ F F   
Sbjct: 15  LTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFDLK 74

Query: 324 SRDRMQASVLEVVIKDKDLV-KDDFVGIVRFDINEVPLRVPPDSPLAPEWYRLEDKK-GE 381
             D+ +   +EV   D D   ++DF+G + F ++E+ +++P D      WY+L +++ GE
Sbjct: 75  PADKDRRLSIEVW--DWDRTTRNDFMGSLSFGVSEL-IKMPVDG-----WYKLLNQEEGE 126

A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology. Length = 131

>gnl|CDD|175974 cd00275, C2_PLC_like, C2 domain present in Phosphoinositide-specific phospholipases C (PLC)

 Score = 51.0 bits (123), Expect = 1e-07
 Identities = 38/115 (33%), Positives = 55/115 (47%), Gaps = 20/115 (17%)

Query: 4   LKLGVQVVGAHNL-LPKDGKGSSSAF---VELY----FDGQRFRT-TIKENDLNPVWNES 54
           L L ++++    L  PK  KGS       VE++     D  +F+T  +K N  NPVWNE+
Sbjct: 2   LTLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNET 61

Query: 55  FYFNISDASKLHYLTLEAYIYNNIGDTNSRSFLGKVCL------TGNSFVPLSDS 103
           F F+++    L +L    Y  ++  D     FLG+ CL       G   VPL DS
Sbjct: 62  FEFDVTVPE-LAFLRFVVYDEDSGDD----DFLGQACLPLDSLRQGYRHVPLLDS 111

PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-II topology. Length = 128

>gnl|CDD|176030 cd08384, C2B_Rabphilin_Doc2, C2 domain second repeat present in Rabphilin and Double C2 domain

 Score = 51.2 bits (123), Expect = 1e-07
 Identities = 28/95 (29%), Positives = 49/95 (51%), Gaps = 12/95 (12%)

Query: 272 LYVRVVKARELPAMDLTGSIDPFVEV-------KIGNYKGITKHYEKNQNPQWHQVFAF- 323
           L V +++   L AMD  G  DPFV++       K   +K   K  +K  NP++++ F + 
Sbjct: 15  LIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVK--KKTLNPEFNEEFFYD 72

Query: 324 -SRDRMQASVLEVVIKDKDLVK-DDFVGIVRFDIN 356
                +    LE+ + DKD+ K +D++G ++  IN
Sbjct: 73  IKHSDLAKKTLEITVWDKDIGKSNDYIGGLQLGIN 107

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 133

>gnl|CDD|175997 cd04031, C2A_RIM1alpha, C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins

 Score = 50.3 bits (121), Expect = 2e-07
 Identities = 32/116 (27%), Positives = 56/116 (48%), Gaps = 18/116 (15%)

Query: 6   LGVQVVGAHNLLPKDGKGSSSAFVELYF-----DGQRFRTTIKENDLNPVWNESFYFNIS 60
           L V V+ A +L P+D     + +V++Y      +  + RT   +  LNP WN++F ++  
Sbjct: 18  LIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQTFEYSNV 77

Query: 61  DASKLHYLTLEAYIYNNIGDTNSRSFLGKVCLTGNSFVPLSDSVVLH-----YPLE 111
               L   TLE  +++   D  +  FLG+V       + L+D+ +L      YPL+
Sbjct: 78  RRETLKERTLEVTVWDYDRDGEN-DFLGEV------VIDLADA-LLDDEPHWYPLQ 125

RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology and do not bind Ca2+. Length = 125

>gnl|CDD|176037 cd08391, C2A_C2C_Synaptotagmin_like, C2 domain first and third repeat in Synaptotagmin-like proteins

 Score = 50.0 bits (120), Expect = 2e-07
 Identities = 30/109 (27%), Positives = 50/109 (45%), Gaps = 18/109 (16%)

Query: 616 GRGTSDTYCVAKYGHKWVRTRTLVDNLSPKYNEQYTWEVF---DPATVLTVGVFDNSQLG 672
            +G SD Y + + G +  +++ + +NL+PK+NE Y  E      P   L + +FD     
Sbjct: 24  VKGKSDPYVIVRVGAQTFKSKVIKENLNPKWNEVY--EAVVDEVPGQELEIELFDEDP-- 79

Query: 673 EKSNGNKDLKIGKVRIRISTLETGRIYTHSYPLLVLHPTGVKKMGELHL 721
                +KD  +G++ I + ++E         PL       VK  G LHL
Sbjct: 80  -----DKDDFLGRLSIDLGSVEKKGFIDEWLPL-----EDVKS-GRLHL 117

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains either the first or third repeat in Synaptotagmin-like proteins with a type-I topology. Length = 121

>gnl|CDD|175990 cd04024, C2A_Synaptotagmin-like, C2 domain first repeat present in Synaptotagmin-like proteins

 Score = 50.5 bits (121), Expect = 2e-07
 Identities = 38/127 (29%), Positives = 52/127 (40%), Gaps = 10/127 (7%)

Query: 6   LGVQVVGAHNLLPKD--GKGSSSAFVELYFDGQRFRTTIKENDLNPVWNESFYFNISDAS 63
           L V VV A +L  KD  GKG S  +  L    QRF+T    N LNP WN    F I  A 
Sbjct: 3   LRVHVVEAKDLAAKDRSGKGKSDPYAILSVGAQRFKTQTIPNTLNPKWNYWCEFPIFSAQ 62

Query: 64  KLHYLTLEAYIYNNIGDTNSRSFLGKVCL-TGNSF-VPLSDSVVLHYPLE--KRGIFSHV 119
               L L  +  +       + +LG+  +     F    +        L+  + G  S V
Sbjct: 63  NQL-LKLILWDKDRF---AGKDYLGEFDIALEEVFADGKTGQSDKWITLKSTRPGKTSVV 118

Query: 120 RGELGLK 126
            GE+ L+
Sbjct: 119 SGEIHLQ 125

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 128

>gnl|CDD|175996 cd04030, C2C_KIAA1228, C2 domain third repeat present in uncharacterized human KIAA1228-like proteins

 Score = 50.7 bits (122), Expect = 2e-07
 Identities = 29/92 (31%), Positives = 46/92 (50%), Gaps = 7/92 (7%)

Query: 5   KLGVQVVGAHNLLPKDGKGSSSAFVELYF-----DGQRFRTTIKENDLNPVWNESFYFNI 59
           KL V V    NL P D       +V LY         R +T++K+++LNPV++E+F F +
Sbjct: 17  KLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFDETFEFPV 76

Query: 60  SDASKLHYLTLEAYIYNNIGDTNSRS-FLGKV 90
           S   +L   TL+  + N+    +     LG+V
Sbjct: 77  S-LEELKRRTLDVAVKNSKSFLSREKKLLGQV 107

KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 127

>gnl|CDD|176064 cd08682, C2_Rab11-FIP_classI, C2 domain found in Rab11-family interacting proteins (FIP) class I

 Score = 50.1 bits (120), Expect = 3e-07
 Identities = 35/128 (27%), Positives = 53/128 (41%), Gaps = 21/128 (16%)

Query: 8   VQVVGAHNLLPKDGKGSSSAFVELYFDGQRFRTTIKENDLNPVWNESFYFNISDASKL-- 65
           V V+ A  LL K   G++ A+V +    +++ T++KE   +PVW E   F +        
Sbjct: 3   VTVLQARGLLCKGKSGTNDAYVIIQLGKEKYSTSVKEKTTSPVWKEECSFELPGLLSGNG 62

Query: 66  --HYLTLEAYIYNNIGDTNSRSFLGKVCLTGNSFVPLSDSVVLH-------YPLE-KRGI 115
               L L     N +G      FLG+V       +PL+D            + LE K G 
Sbjct: 63  NRATLQLTVMHRNLLG---LDKFLGQVS------IPLNDLDEDKGRRRTRWFKLESKPGK 113

Query: 116 FSHVRGEL 123
               RGE+
Sbjct: 114 DDKERGEI 121

Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The members in this CD are class I FIPs. The exact function of the Rab11 and FIP interaction is unknown, but there is speculation that it involves the role of forming a targeting complex that recruits a group of proteins involved in membrane transport to organelles. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 126

>gnl|CDD|175993 cd04027, C2B_Munc13, C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins

 Score = 50.3 bits (120), Expect = 3e-07
 Identities = 32/92 (34%), Positives = 48/92 (52%), Gaps = 17/92 (18%)

Query: 272 LYVRVVKARELPAMDLTGSIDPFVEVKIGNYKGITKHYEKNQNPQWHQVFAF----SRDR 327
           + + VV A+ L A D TG+ DP+V V++G  K  TK   +N NP W++ F F    S DR
Sbjct: 3   ISITVVCAQGLIAKDKTGTSDPYVTVQVGKTKKRTKTIPQNLNPVWNEKFHFECHNSSDR 62

Query: 328 MQASVLEVVIKDKDLVK----------DDFVG 349
           ++  V +   +D D+            DDF+G
Sbjct: 63  IKVRVWD---EDDDIKSRLKQKFTRESDDFLG 91

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 127

>gnl|CDD|176007 cd04042, C2A_MCTP_PRT, C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

 Score = 50.0 bits (120), Expect = 3e-07
 Identities = 34/111 (30%), Positives = 53/111 (47%), Gaps = 9/111 (8%)

Query: 614 RDGRGTSDTYCVAKYGHKWV-RTRTLVDNLSPKYNEQYTWEVFDPATVLTVGVFDNSQLG 672
           RD  GTSD Y   KYG K V +++T+  NL+P ++E++T  + D    L + VFD     
Sbjct: 15  RDRGGTSDPYVKFKYGGKTVYKSKTIYKNLNPVWDEKFTLPIEDVTQPLYIKVFD----- 69

Query: 673 EKSNGNKDLKIGKVRIRISTLETGRIYTHSYPLLVLHPTGVKKMGELHLAI 723
               G  D  +G   + +STLE  +       L    P   + +G + L +
Sbjct: 70  -YDRGLTDDFMGSAFVDLSTLELNKPTEVKLKL--EDPNSDEDLGYISLVV 117

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 121

>gnl|CDD|176010 cd04045, C2C_Tricalbin-like, C2 domain third repeat present in Tricalbin-like proteins

 Score = 49.5 bits (119), Expect = 3e-07
 Identities = 27/80 (33%), Positives = 38/80 (47%), Gaps = 6/80 (7%)

Query: 12 GAHNLLPKDGKGSSSAFVELYFDG-QRFRTTIKENDLNPVWNESFYFNISDASKLHYLTL 70
           A++L   +G G    +V +  +G  + RT    N LNPVW+E  Y  +   S    +TL
Sbjct: 9  KANDLKNLEGVGKIDPYVRVLVNGIVKGRTVTISNTLNPVWDEVLYVPV--TSPNQKITL 66

Query: 71 EAYIYNNIGDTNSRSFLGKV 90
          E   Y  +G    RS LG V
Sbjct: 67 EVMDYEKVGK--DRS-LGSV 83

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 120

>gnl|CDD|176005 cd04040, C2D_Tricalbin-like, C2 domain fourth repeat present in Tricalbin-like proteins

 Score = 49.1 bits (118), Expect = 4e-07
 Identities = 31/93 (33%), Positives = 48/93 (51%), Gaps = 6/93 (6%)

Query: 436 VRVNVVEAQDLVPTEKNHFPDVYVKAQI-GNQVLKTKICQARTLSAVWNEDLLFVAAEPF 494
           + V+V+ A++L   ++N   D +VK  + G +V KTK    +TL+ VWNE          
Sbjct: 1   LTVDVISAENLPSADRNGKSDPFVKFYLNGEKVFKTKT-IKKTLNPVWNESFEVPVPSRV 59

Query: 495 EDHLVLTVED--RVGPGKDEIIGRVIIPLSAIE 525
              L + V D  R G  KD+++G   I LS +E
Sbjct: 60  RAVLKVEVYDWDRGG--KDDLLGSAYIDLSDLE 90

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fifth C2 repeat, C2E, and has a type-II topology. Length = 115

>gnl|CDD|176030 cd08384, C2B_Rabphilin_Doc2, C2 domain second repeat present in Rabphilin and Double C2 domain

 Score = 49.7 bits (119), Expect = 4e-07
 Identities = 32/97 (32%), Positives = 52/97 (53%), Gaps = 9/97 (9%)

Query: 6   LGVQVVGAHNLLPKDGKGSSSAFVELYF--DGQ---RFRTTIKENDLNPVWNESFYFNIS 60
           L V ++   NL   D  G S  FV+LY   D     + +T +K+  LNP +NE F+++I 
Sbjct: 15  LIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYDIK 74

Query: 61  DASKLHYLTLEAYIYN-NIGDTNSRSFLGKVCLTGNS 96
             S L   TLE  +++ +IG +N   ++G + L  N+
Sbjct: 75  -HSDLAKKTLEITVWDKDIGKSN--DYIGGLQLGINA 108

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 133

>gnl|CDD|176009 cd04044, C2A_Tricalbin-like, C2 domain first repeat present in Tricalbin-like proteins

 Score = 49.5 bits (119), Expect = 4e-07
 Identities = 24/88 (27%), Positives = 38/88 (43%), Gaps = 8/88 (9%)

Query: 6  LGVQVVGAHNLLPKDGKGSS-SAFVELYFDGQRF--RTTIKENDLNPVWNESFYFNISDA 62
          L V +  A  L   D  G +   +V      +R   RT +K++  NPVWNE+ Y  ++  
Sbjct: 4  LAVTIKSARGLKGSDIIGGTVDPYVTFSISNRRELARTKVKKDTSNPVWNETKYILVNSL 63

Query: 63 SKLHYLTLEAYIYNNIGDTNSRSFLGKV 90
          ++   L L  Y +N   D      +G  
Sbjct: 64 TEP--LNLTVYDFN---DKRKDKLIGTA 86

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 124

>gnl|CDD|176047 cd08402, C2B_Synaptotagmin-1, C2 domain second repeat present in Synaptotagmin 1

 Score = 49.7 bits (119), Expect = 4e-07
 Identities = 36/99 (36%), Positives = 51/99 (51%), Gaps = 11/99 (11%)

Query: 5   KLGVQVVGAHNLLPKDGKGSSSAFVE--LYFDGQRF---RTTIKENDLNPVWNESFYFNI 59
           KL V ++ A NL   D  G S  +V+  L  +G+R    +TTIK+  LNP +NESF F +
Sbjct: 16  KLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNESFSFEV 75

Query: 60  S--DASKLHYLTLEAYIYNNIGDTNSRSFLGKVCLTGNS 96
                 K+H L +    Y+ IG       +GKV L  N+
Sbjct: 76  PFEQIQKVH-LIVTVLDYDRIG---KNDPIGKVVLGCNA 110

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136

>gnl|CDD|175989 cd04022, C2A_MCTP_PRT_plant, C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

 Score = 48.9 bits (117), Expect = 6e-07
 Identities = 33/110 (30%), Positives = 56/110 (50%), Gaps = 10/110 (9%)

Query: 438 VNVVEAQDLVPTEKNHFPDVYVKAQIGNQVLKTKICQARTLSAVWNEDLLFVAAEPFE-D 496
           V VV+AQDL+P +       YV+     Q  +T+  + + L+ VWNE L+F  ++P    
Sbjct: 4   VEVVDAQDLMPKDGQGSSSAYVELDFDGQKKRTRT-KPKDLNPVWNEKLVFNVSDPSRLS 62

Query: 497 HLVLTV----EDRVGPGKDEIIGRVIIPLSAIEKRADERIIHSRWFNLEK 542
           +LVL V    + R G  +   +GRV I  ++    ++  +   + + LEK
Sbjct: 63  NLVLEVYVYNDRRSGRRRS-FLGRVRISGTSFVPPSEAVV---QRYPLEK 108

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 127

>gnl|CDD|176023 cd08377, C2C_MCTP_PRT, C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

 Score = 48.8 bits (117), Expect = 6e-07
 Identities = 30/106 (28%), Positives = 50/106 (47%), Gaps = 8/106 (7%)

Query: 435 YVRVNVVEAQDLVPTEKNHFPDVYVKAQIGNQVLKTKICQARTLSAVWNEDLLFVAAEPF 494
           +++V V+ A  L   +     D +   ++ N  L+T     +TL+  WN+   F   +  
Sbjct: 2   FLQVKVIRASGLAAADIGGKSDPFCVLELVNARLQTHTIY-KTLNPEWNKIFTF-PIKDI 59

Query: 495 EDHLVLTVEDRVGPGKDEIIGRVIIPLSAIEKRADERIIHSRWFNL 540
            D L +TV D     K E +G+V IPL +I+    ER    +W+ L
Sbjct: 60  HDVLEVTVYDEDKDKKPEFLGKVAIPLLSIKNG--ER----KWYAL 99

MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 119

>gnl|CDD|176024 cd08378, C2B_MCTP_PRT_plant, C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

 Score = 48.1 bits (115), Expect = 1e-06
 Identities = 33/109 (30%), Positives = 50/109 (45%), Gaps = 9/109 (8%)

Query: 435 YVRVNVVEAQDLVPTEKNHFPDVYVKAQIGNQVLKTKICQARTLSAVWNEDLLFVAAEPF 494
           Y+ V VV+A+ L P   N   D  V+ ++GN    TK    RT +  WN+   F      
Sbjct: 1   YLYVRVVKARGL-PANSN---DPVVEVKLGNYKGSTK-AIERTSNPEWNQVFAFSKDRLQ 55

Query: 495 EDHLVLTVEDRVGPGKDEIIGRVIIPLSAIEKRA--DERIIHSRWFNLE 541
              L ++V D+    KD+ +G V   LS +  R   D  +   +W+ LE
Sbjct: 56  GSTLEVSVWDK-DKAKDDFLGGVCFDLSEVPTRVPPDSPLA-PQWYRLE 102

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 121

>gnl|CDD|175989 cd04022, C2A_MCTP_PRT_plant, C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

 Score = 48.1 bits (115), Expect = 1e-06
 Identities = 26/92 (28%), Positives = 50/92 (54%), Gaps = 4/92 (4%)

Query: 602 ILNAVGLHPMKTRDGRGTSDTYCVAKYGHKWVRTRTLVDNLSPKYNEQYTWEVFDPATVL 661
           +++A  L P   +DG+G+S  Y    +  +  RTRT   +L+P +NE+  + V DP + L
Sbjct: 6   VVDAQDLMP---KDGQGSSSAYVELDFDGQKKRTRTKPKDLNPVWNEKLVFNVSDP-SRL 61

Query: 662 TVGVFDNSQLGEKSNGNKDLKIGKVRIRISTL 693
           +  V +     ++ +G +   +G+VRI  ++ 
Sbjct: 62  SNLVLEVYVYNDRRSGRRRSFLGRVRISGTSF 93

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 127

>gnl|CDD|175999 cd04033, C2_NEDD4_NEDD4L, C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42)

 Score = 48.5 bits (116), Expect = 1e-06
 Identities = 36/128 (28%), Positives = 63/128 (49%), Gaps = 11/128 (8%)

Query: 272 LYVRVVKARELPAMDLTGSIDPFVEVKIGNYKGI-------TKHYEKNQNPQWHQVFAFS 324
           L V+V+   +L   D+ G+ DP+V++ + +  G        TK  +K  NP+W++ F F 
Sbjct: 2   LRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFR 61

Query: 325 RDRMQASVLEVVIKDKDLVKDDFVGIVRFDINEVPLRVP-PDSPLAPEWYRLEDK--KGE 381
            +  +  +L  V  +  L +DDF+G V   +N +P   P  +     + Y L  +  K  
Sbjct: 62  VNPREHRLLFEVFDENRLTRDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRPRSSKS- 120

Query: 382 KIKGELML 389
           ++KG L L
Sbjct: 121 RVKGHLRL 128

Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 133

>gnl|CDD|176002 cd04037, C2E_Ferlin, C2 domain fifth repeat in Ferlin

 Score = 47.9 bits (115), Expect = 1e-06
 Identities = 27/87 (31%), Positives = 44/87 (50%), Gaps = 1/87 (1%)

Query: 436 VRVNVVEAQDLVPTEKNHFPDVYVKAQIGNQVLKTK-ICQARTLSAVWNEDLLFVAAEPF 494
           VRV VV A++L P + N   D Y+K ++G + +  +      TL+ V+ +     A  P 
Sbjct: 2   VRVYVVRARNLQPKDPNGKSDPYLKIKLGKKKINDRDNYIPNTLNPVFGKMFELEATLPG 61

Query: 495 EDHLVLTVEDRVGPGKDEIIGRVIIPL 521
              L ++V D    G D++IG  +I L
Sbjct: 62  NSILKISVMDYDLLGSDDLIGETVIDL 88

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fifth C2 repeat, C2E, and has a type-II topology. Length = 124

>gnl|CDD|176019 cd08373, C2A_Ferlin, C2 domain first repeat in Ferlin

 Score = 48.0 bits (115), Expect = 1e-06
 Identities = 30/109 (27%), Positives = 44/109 (40%), Gaps = 21/109 (19%)

Query: 10  VVGAHNLLPKDGKGSSSAFVELYFDGQRFRTTIKENDLNPVWNESFYFNISDASKLH--- 66
           VV   NL    GKG      ++ F G + +T + EN+LNPVWNE+F + +  A       
Sbjct: 2   VVSLKNLPGLKGKGDR--IAKVTFRGVKKKTRVLENELNPVWNETFEWPL--AGSPDPDE 57

Query: 67  YLTLEAYIYNNIGDTNSRSFLGKVCLTGNSFVPLSD-----SVVLHYPL 110
            L +    Y  +G       +G         V L D      + +  PL
Sbjct: 58  SLEIVVKDYEKVG---RNRLIGSAT------VSLQDLVSEGLLEVTEPL 97

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 127

>gnl|CDD|175991 cd04025, C2B_RasA1_RasA4, C2 domain second repeat present in RasA1 and RasA4

 Score = 47.9 bits (114), Expect = 2e-06
 Identities = 27/86 (31%), Positives = 48/86 (55%), Gaps = 4/86 (4%)

Query: 5  KLGVQVVGAHNLLPKDGKGSSSAFVELYFDGQRFRTTIKENDLNPVWNESFYFNISDASK 64
          +L   V+ A +L PKD  G+S  FV ++++GQ   T++ +    P WNE F F + + + 
Sbjct: 1  RLRCHVLEARDLAPKDRNGTSDPFVRVFYNGQTLETSVVKKSCYPRWNEVFEFELMEGAD 60

Query: 65 LHYLTLEAYIYNNIGDTNSRSFLGKV 90
             L++E + ++ +   +   FLGKV
Sbjct: 61 -SPLSVEVWDWDLVSKND---FLGKV 82

RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 123

>gnl|CDD|175976 cd04009, C2B_Munc13-like, C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins

 Score = 48.0 bits (115), Expect = 2e-06
 Identities = 29/108 (26%), Positives = 48/108 (44%), Gaps = 12/108 (11%)

Query: 272 LYVRVVKARELPAMDLTGSIDPFVEVKI-------GNYKGITKHYEKNQNPQWHQVFAF- 323
           L V ++ AR L  +D  GS DPFV+V++             T+  +K   P + + F F 
Sbjct: 18  LRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEFN 77

Query: 324 -SRDRMQ--ASVLEVVIKDKD-LVKDDFVGIVRFDINEVPLRVPPDSP 367
              ++     ++L   +KD D L  +DF G     +N++P      S 
Sbjct: 78  VPPEQCSVEGALLLFTVKDYDLLGSNDFEGEAFLPLNDIPGVEDTSSA 125

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 133

>gnl|CDD|176009 cd04044, C2A_Tricalbin-like, C2 domain first repeat present in Tricalbin-like proteins

 Score = 47.9 bits (115), Expect = 2e-06
 Identities = 26/93 (27%), Positives = 41/93 (44%), Gaps = 5/93 (5%)

Query: 436 VRVNVVEAQDL-VPTEKNHFPDVYVKAQIGNQ--VLKTKICQARTLSAVWNEDLLFVAAE 492
           + V +  A+ L          D YV   I N+  + +TK+ +  T + VWNE    +   
Sbjct: 4   LAVTIKSARGLKGSDIIGGTVDPYVTFSISNRRELARTKVKKD-TSNPVWNETKYILVNS 62

Query: 493 PFEDHLVLTVEDRVGPGKDEIIGRVIIPLSAIE 525
              + L LTV D     KD++IG     LS++ 
Sbjct: 63  -LTEPLNLTVYDFNDKRKDKLIGTAEFDLSSLL 94

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 124

>gnl|CDD|176063 cd08681, C2_fungal_Inn1p-like, C2 domain found in fungal Ingression 1 (Inn1) proteins

 Score = 47.6 bits (114), Expect = 2e-06
 Identities = 33/119 (27%), Positives = 51/119 (42%), Gaps = 8/119 (6%)

Query: 272 LYVRVVKARELPAMDLTGSIDPFVEVKIGNYKGITK-HYEKNQNPQWHQVFAFSRDRMQA 330
           L V V+KAR LP        DP+  ++IG     TK  +   Q+P+W +   F     + 
Sbjct: 3   LVVVVLKARNLPNKRKLDKQDPYCVLRIGGVTKKTKTDFRGGQHPEWDEELRFEITEDKK 62

Query: 331 SVLEVVIKDKDLVKDDFVGIVRFDINEVPLRVPPDSPLAPEWYRLEDKKGEKIKGELML 389
            +L+V + D D  K D +G    D++        D     +WY L      +  GE+ L
Sbjct: 63  PILKVAVFDDDKRKPDLIGDTEVDLSPALKEGEFD-----DWYEL--TLKGRYAGEVYL 114

Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contributing both to membrane ingression, as well as to stability of the contracting ring. Additionally, Inn1 might induce curvature of the plasma membrane adjacent to the contracting ring, thereby promoting ingression of the membrane. It has been shown that the C2 domain of human synaptotagmin induces curvature in target membranes and thereby contributes to fusion of these membranes with synaptic vesicles. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 118

>gnl|CDD|175978 cd04011, C2B_Ferlin, C2 domain second repeat in Ferlin

 Score = 47.2 bits (113), Expect = 2e-06
 Identities = 25/87 (28%), Positives = 45/87 (51%), Gaps = 9/87 (10%)

Query: 274 VRVVKARELPAMDLTGSIDPFVEVKIGNYKGITKHYEKNQNPQWHQVFAF----SRDRMQ 329
           VRV++AR+L      G+IDP V+V++G  K  T   +    P +++ F F    S D + 
Sbjct: 8   VRVIEARQLV----GGNIDPVVKVEVGGQKKYTSVKKGTNCPFYNEYFFFNFHESPDELF 63

Query: 330 ASVLEV-VIKDKDLVKDDFVGIVRFDI 355
             ++++ V   + L  D  +G  + D+
Sbjct: 64  DKIIKISVYDSRSLRSDTLIGSFKLDV 90

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 111

>gnl|CDD|175984 cd04017, C2D_Ferlin, C2 domain fourth repeat in Ferlin

 Score = 47.5 bits (114), Expect = 3e-06
 Identities = 36/130 (27%), Positives = 58/130 (44%), Gaps = 27/130 (20%)

Query: 279 ARELPAMDLTGSIDPFVEVKIGNYKGITKHYEKNQNPQWHQVFAF-------SRDRMQAS 331
           AR+L A D +G  DPF  V   N    T+  ++  +P W Q   F       S + +  +
Sbjct: 10  ARDLLAADKSGLSDPFARVSFLNQSQETEVIKETLSPTWDQTLIFDEVELYGSPEEIAQN 69

Query: 332 ----VLEVVIKDKDLVKDDFVG------IVRFDINEVPLRVPPDSPLAPEWYRLEDKKGE 381
               V+E+  +D    KD+F+G      +V+ D+ E       D P   +W+ +   KG 
Sbjct: 70  PPLVVVELFDQDSVG-KDEFLGRSVAKPLVKLDLEE-------DFPPKLQWFPI--YKGG 119

Query: 382 KIKGELMLAV 391
           +  GEL+ A 
Sbjct: 120 QSAGELLAAF 129

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fourth C2 repeat, C2D, and has a type-II topology. Length = 135

>gnl|CDD|176051 cd08406, C2B_Synaptotagmin-12, C2 domain second repeat present in Synaptotagmin 12

 Score = 47.1 bits (112), Expect = 4e-06
 Identities = 27/81 (33%), Positives = 48/81 (59%), Gaps = 6/81 (7%)

Query: 5  KLGVQVVGAHNLLPKDGKGSSSAFVELYF--DGQRF---RTTIKENDLNPVWNESFYFNI 59
          +L V VV A NL+  +GK ++  FV++Y   DG++    +T++K +D NP++NE+  F++
Sbjct: 16 RLTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRKISKKKTSVKRDDTNPIFNEAMIFSV 75

Query: 60 SDASKLHYLTLEAYIYNNIGD 80
            A  L  L+L   +  +  D
Sbjct: 76 P-AIVLQDLSLRVTVAESTED 95

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136

>gnl|CDD|176008 cd04043, C2_Munc13_fungal, C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group

 Score = 46.5 bits (111), Expect = 4e-06
 Identities = 26/97 (26%), Positives = 40/97 (41%), Gaps = 13/97 (13%)

Query: 8   VQVVGAHNLLPKDGKGSSSAFVELYFDGQRFR---TTIKENDLNPVWNESFYFNISDASK 64
           +++V A NL      G S  +V L     + R   T    + LNP W+E F   +     
Sbjct: 5   IRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEEFELEVPAGEP 64

Query: 65  LHYLTLEAYIYNNIGDTNSRSFLGKVCLTGNSFVPLS 101
              L + A ++        RSF+GK  L G + + L 
Sbjct: 65  ---LWISATVW-------DRSFVGKHDLCGRASLKLD 91

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 126

>gnl|CDD|176025 cd08379, C2D_MCTP_PRT_plant, C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

 Score = 46.2 bits (110), Expect = 5e-06
 Identities = 17/77 (22%), Positives = 27/77 (35%), Gaps = 9/77 (11%)

Query: 863 WNYRYR-PRYPP--------HMNIKISQAEAVHPDELDEEFDTFPTSRSPELVRMRYDRL 913
           WN +Y  P Y P          N +    EAV PD L  +     ++   + V      L
Sbjct: 50  WNEQYTWPVYDPCTVLTVGVFDNSQSHWKEAVQPDVLIGKVRIRLSTLEDDRVYAHSYPL 109

Query: 914 RSVAGRIQTVVGDVATQ 930
            S+       +G++   
Sbjct: 110 LSLNPSGVKKMGELECA 126

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fourth C2 repeat, C2D, and has a type-II topology. Length = 126

>gnl|CDD|176021 cd08375, C2_Intersectin, C2 domain present in Intersectin

 Score = 46.2 bits (110), Expect = 6e-06
 Identities = 25/79 (31%), Positives = 41/79 (51%), Gaps = 1/79 (1%)

Query: 272 LYVRVVKARELPAMDLTGSIDPFVEVKIGNYKGITKHYEKNQNPQWHQVFAFSRDRMQAS 331
           L V +V+ R+L   +  G  DP+ EV +G+ +  TK      NP+W+    F    ++  
Sbjct: 17  LMVVIVEGRDLKPCNSNGKSDPYCEVSMGSQEHKTKVVSDTLNPKWNSSMQFFVKDLEQD 76

Query: 332 VLEVVIKDKDLVK-DDFVG 349
           VL + + D+D    DDF+G
Sbjct: 77  VLCITVFDRDFFSPDDFLG 95

A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. The members here have topology I. Length = 136

>gnl|CDD|176003 cd04038, C2_ArfGAP, C2 domain present in Arf GTPase Activating Proteins (GAP)

 Score = 46.6 bits (111), Expect = 7e-06
 Identities = 27/91 (29%), Positives = 43/91 (47%), Gaps = 7/91 (7%)

Query: 436 VRVNVVEAQDLVPTEKNHFPDVYVKAQIGNQVLKTKICQARTLSAVWNEDLLFVAAEPFE 495
           ++V VV   +L   +     D YV   +GNQ +KT++   + L+ VWNE+L      P  
Sbjct: 4   LKVRVVRGTNLAVRDF-TSSDPYVVLTLGNQKVKTRV-IKKNLNPVWNEELTLSVPNP-- 59

Query: 496 DHLVLTVE--DRVGPGKDEIIGRVIIPLSAI 524
               L +E  D+    KD+ +G   I L  +
Sbjct: 60  -MAPLKLEVFDKDTFSKDDSMGEAEIDLEPL 89

ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 145

>gnl|CDD|176037 cd08391, C2A_C2C_Synaptotagmin_like, C2 domain first and third repeat in Synaptotagmin-like proteins

 Score = 45.7 bits (109), Expect = 8e-06
 Identities = 24/91 (26%), Positives = 44/91 (48%), Gaps = 11/91 (12%)

Query: 6  LGVQVVGAHNLLPKD------GKGSSSAFVELYFDGQRFRTTIKENDLNPVWNESFYFNI 59
          L + V+ A +L+ KD       KG S  +V +    Q F++ + + +LNP WNE +   +
Sbjct: 3  LRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGAQTFKSKVIKENLNPKWNEVYEAVV 62

Query: 60 SDASKLHYLTLEAYIYNNIGDTNSRSFLGKV 90
           +        LE  +++   D +   FLG++
Sbjct: 63 DEV---PGQELEIELFDE--DPDKDDFLGRL 88

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains either the first or third repeat in Synaptotagmin-like proteins with a type-I topology. Length = 121

>gnl|CDD|175996 cd04030, C2C_KIAA1228, C2 domain third repeat present in uncharacterized human KIAA1228-like proteins

 Score = 45.7 bits (109), Expect = 8e-06
 Identities = 31/117 (26%), Positives = 52/117 (44%), Gaps = 19/117 (16%)

Query: 272 LYVRVVKARELPAMDLTGSIDPFVEVKI-------GNYKGITKHYEKNQNPQWHQVFAF- 323
           L V V K R LP  D +   DP+V + +          K  T   + N NP + + F F 
Sbjct: 18  LIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRK--TSVKKDNLNPVFDETFEFP 75

Query: 324 -SRDRMQASVLEVVIKDKD--LVKD-DFVGIVRFDINEVPLRVPPDSPLAPEWYRLE 376
            S + ++   L+V +K+    L ++   +G V  D++++ L     S    +WY L 
Sbjct: 76  VSLEELKRRTLDVAVKNSKSFLSREKKLLGQVLIDLSDLDL-----SKGFTQWYDLT 127

KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 127

>gnl|CDD|175998 cd04032, C2_Perforin, C2 domain of Perforin

 Score = 45.7 bits (109), Expect = 1e-05
 Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 3/70 (4%)

Query: 5  KLGVQVVGAHNLLPKDGKGSSSAFVELYFDGQRFRT-TIKENDLNPVWNESFYFNISDAS 63
           L V V+ A  L   D   S+  +V+++F GQ  RT  I  N+ NP WN +F F   + S
Sbjct: 29 TLTVTVLRATGLW-GDYFTSTDGYVKVFFGGQEKRTEVIWNNN-NPRWNATFDFGSVELS 86

Query: 64 KLHYLTLEAY 73
              L  E +
Sbjct: 87 PGGKLRFEVW 96

Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 127

>gnl|CDD|176018 cd04054, C2A_Rasal1_RasA4, C2 domain first repeat present in RasA1 and RasA4

 Score = 45.2 bits (107), Expect = 1e-05
 Identities = 29/81 (35%), Positives = 43/81 (53%), Gaps = 1/81 (1%)

Query: 272 LYVRVVKARELPAMDLTGSIDPFVEVKIGNYKGI-TKHYEKNQNPQWHQVFAFSRDRMQA 330
           LY+R+V+ + LPA D+TGS DP+  VK+ N   I T    K  NP W + +         
Sbjct: 2   LYIRIVEGKNLPAKDITGSSDPYCIVKVDNEVIIRTATVWKTLNPFWGEEYTVHLPPGFH 61

Query: 331 SVLEVVIKDKDLVKDDFVGIV 351
           +V   V+ +  L +DD +G V
Sbjct: 62  TVSFYVLDEDTLSRDDVIGKV 82

Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 121

>gnl|CDD|227371 COG5038, COG5038, Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]

 Score = 49.0 bits (117), Expect = 1e-05
 Identities = 24/86 (27%), Positives = 37/86 (43%), Gaps = 7/86 (8%)

Query: 6    LGVQVVGAHNLLPKDGKGSSSAFVELYFDGQRFRTT--IKENDLNPVWNESFYFNISDAS 63
            L + +    NL   D  G S  FV+L+ + +    T  +K+  LNPVWNE F   + +  
Sbjct: 1042 LTIMLRSGENLPSSDENGYSDPFVKLFLNEKSVYKTKVVKKT-LNPVWNEEFTIEVLNRV 1100

Query: 64   KLHYLTLEAYIYNNIGDTNSRSFLGK 89
            K   LT+    ++          LG 
Sbjct: 1101 K-DVLTINVNDWD---SGEKNDLLGT 1122

Length = 1227

>gnl|CDD|176022 cd08376, C2B_MCTP_PRT, C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

 Score = 44.6 bits (106), Expect = 2e-05
 Identities = 25/96 (26%), Positives = 46/96 (47%), Gaps = 7/96 (7%)

Query: 611 MKTRDGRGTSDTYCVAKYGHKWVRTRTLVDNLSPKYNEQYTWEVFDPAT-VLTVGVFDNS 669
           +   D  G SD Y   + G++  +++     L+P++ EQ+   +FD  + +L + V+D  
Sbjct: 12  LPPMDDNGLSDPYVKFRLGNEKYKSKVCSKTLNPQWLEQFDLHLFDDQSQILEIEVWD-- 69

Query: 670 QLGEKSNGNKDLKIGKVRIRISTLETGRIYTHSYPL 705
               K  G KD  IG+  I +S L   + ++    L
Sbjct: 70  ----KDTGKKDEFIGRCEIDLSALPREQTHSLELEL 101

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 116

>gnl|CDD|175990 cd04024, C2A_Synaptotagmin-like, C2 domain first repeat present in Synaptotagmin-like proteins

 Score = 45.1 bits (107), Expect = 2e-05
 Identities = 36/137 (26%), Positives = 64/137 (46%), Gaps = 16/137 (11%)

Query: 596 GILELGILNAVGLHPMKTRDGRGTSDTYCVAKYGHKWVRTRTLVDNLSPKYNEQYTWEVF 655
           G+L + ++ A  L   K R G+G SD Y +   G +  +T+T+ + L+PK+N    + +F
Sbjct: 1   GVLRVHVVEAKDLAA-KDRSGKGKSDPYAILSVGAQRFKTQTIPNTLNPKWNYWCEFPIF 59

Query: 656 DP-ATVLTVGVFDNSQLGEKSN-GNKDLKIGKVRIRISTLETGRIYTHSYPLLVLHPTGV 713
                +L + ++D  +   K   G  D+ + +V     T ++ +  T       L  T  
Sbjct: 60  SAQNQLLKLILWDKDRFAGKDYLGEFDIALEEVFADGKTGQSDKWIT-------LKSTRP 112

Query: 714 KKM----GELHLAIRFS 726
            K     GE+HL  +FS
Sbjct: 113 GKTSVVSGEIHL--QFS 127

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 128

>gnl|CDD|176007 cd04042, C2A_MCTP_PRT, C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

 Score = 45.0 bits (107), Expect = 2e-05
 Identities = 22/92 (23%), Positives = 42/92 (45%), Gaps = 3/92 (3%)

Query: 436 VRVNVVEAQDLVPTEKNHFPDVYVKAQI-GNQVLKTKICQARTLSAVWNEDLLFVAAEPF 494
           + +++ E ++L   ++    D YVK +  G  V K+K    + L+ VW+E       +  
Sbjct: 2   LDIHLKEGRNLAARDRGGTSDPYVKFKYGGKTVYKSKTIY-KNLNPVWDEKFTLPIEDVT 60

Query: 495 EDHLVLTVEDRVGPGKDEIIGRVIIPLSAIEK 526
           +  L + V D      D+ +G   + LS +E 
Sbjct: 61  Q-PLYIKVFDYDRGLTDDFMGSAFVDLSTLEL 91

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 121

>gnl|CDD|175988 cd04021, C2_E3_ubiquitin_ligase, C2 domain present in E3 ubiquitin ligase

 Score = 45.0 bits (107), Expect = 2e-05
 Identities = 18/64 (28%), Positives = 28/64 (43%), Gaps = 2/64 (3%)

Query: 5  KLGVQVVGAHNLLPKDGKGSSSAFVELYFDGQRFR-TTIKENDLNPVWNESFYFNISDAS 63
          +L + V  A  L           +VE+  DGQ  + T + +   NP WNE F   ++  S
Sbjct: 3  QLQITVESAK-LKSNSKSFKPDPYVEVTVDGQPPKKTEVSKKTSNPKWNEHFTVLVTPQS 61

Query: 64 KLHY 67
           L +
Sbjct: 62 TLEF 65

E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 125

>gnl|CDD|175987 cd04020, C2B_SLP_1-2-3-4, C2 domain second repeat present in Synaptotagmin-like proteins 1-4

 Score = 45.4 bits (108), Expect = 2e-05
 Identities = 30/91 (32%), Positives = 46/91 (50%), Gaps = 9/91 (9%)

Query: 272 LYVRVVKARELPAMDLTGSIDPFVEV-----KIGNYKGITKHYEKNQNPQWHQVF---AF 323
           L+V V +A+ LPA+   G+ D FV+      K    K  T   +K+ NP W+  F     
Sbjct: 29  LHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQKTPVVKKSVNPVWNHTFVYDGV 88

Query: 324 SRDRMQASVLEVVIKDKD-LVKDDFVGIVRF 353
           S + +  + LE+ + D D L  +DF+G VR 
Sbjct: 89  SPEDLSQACLELTVWDHDKLSSNDFLGGVRL 119

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 162

>gnl|CDD|176049 cd08404, C2B_Synaptotagmin-4, C2 domain second repeat present in Synaptotagmin 4

 Score = 44.3 bits (105), Expect = 3e-05
 Identities = 30/86 (34%), Positives = 50/86 (58%), Gaps = 8/86 (9%)

Query: 272 LYVRVVKARELPAMDLTGSIDPFVEVKI-GNYKGITK---HYEK-NQNPQWHQVFAFS-- 324
           L V V+KAR LP MD++G  DP+V+V +    K I+K   H +K   NP +++ F F   
Sbjct: 17  LTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNESFVFDIP 76

Query: 325 RDRMQASVLEVVIKDKDLV-KDDFVG 349
            + ++   +E ++ D D V K++ +G
Sbjct: 77  SEELEDISVEFLVLDSDRVTKNEVIG 102

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136

>gnl|CDD|176001 cd04036, C2_cPLA2, C2 domain present in cytosolic PhosphoLipase A2 (cPLA2)

 Score = 43.8 bits (104), Expect = 4e-05
 Identities = 24/58 (41%), Positives = 34/58 (58%), Gaps = 5/58 (8%)

Query: 6  LGVQVVGAHNLLPKDGKGSSSAFVELYF---DGQRFRT-TIKENDLNPVWNESFYFNI 59
          L V+V+ A N+   D   +   +VEL+      ++ RT TIK N +NPVWNE+F F I
Sbjct: 2  LTVRVLRATNITKGDLLSTPDCYVELWLPTASDEKKRTKTIK-NSINPVWNETFEFRI 58

A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members of this cd have a type-II topology. Length = 119

>gnl|CDD|175974 cd00275, C2_PLC_like, C2 domain present in Phosphoinositide-specific phospholipases C (PLC)

 Score = 43.7 bits (104), Expect = 4e-05
 Identities = 23/97 (23%), Positives = 41/97 (42%), Gaps = 9/97 (9%)

Query: 436 VRVNVVEAQDLVPTEKNHF--PDVYVKAQI------GNQVLKTKICQARTLSAVWNEDLL 487
           + + ++  Q L   + +     D YV+ +I       +   KTK+ +    + VWNE   
Sbjct: 4   LTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFE 63

Query: 488 FVAAEPFEDHLVLTVEDRVGPGKDEIIGRVIIPLSAI 524
           F    P    L   V D    G D+ +G+  +PL ++
Sbjct: 64  FDVTVPELAFLRFVVYDE-DSGDDDFLGQACLPLDSL 99

PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-II topology. Length = 128

>gnl|CDD|227371 COG5038, COG5038, Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]

 Score = 47.4 bits (113), Expect = 4e-05
 Identities = 28/104 (26%), Positives = 48/104 (46%), Gaps = 6/104 (5%)

Query: 264  DLVERMYFLYVRVVKARELPAMDLTGSIDPFVEVKIG---NYKGITKHYEKNQNPQWHQV 320
            ++VE   +L + +     LP+ D  G  DPFV++ +     YK  TK  +K  NP W++ 
Sbjct: 1034 EMVENSGYLTIMLRSGENLPSSDENGYSDPFVKLFLNEKSVYK--TKVVKKTLNPVWNEE 1091

Query: 321  FAFSRDRMQASVLEVVIKDKDLV-KDDFVGIVRFDINEVPLRVP 363
            F          VL + + D D   K+D +G    D++++     
Sbjct: 1092 FTIEVLNRVKDVLTINVNDWDSGEKNDLLGTAEIDLSKLEPGGT 1135

Length = 1227

>gnl|CDD|176056 cd08521, C2A_SLP, C2 domain first repeat present in Synaptotagmin-like proteins

 Score = 43.8 bits (104), Expect = 4e-05
 Identities = 30/92 (32%), Positives = 52/92 (56%), Gaps = 10/92 (10%)

Query: 6   LGVQVVGAHNLLPKD-GKGSSSAFVELYF--DGQRF---RTTIKENDLNPVWNESFYFNI 59
           L V +    NL   D  K  S+ +V++Y   D  +    +T++K+N  NPV+NE+  ++I
Sbjct: 16  LEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRKTSVKKNTTNPVFNETLKYHI 75

Query: 60  SDASKLHYLTLEAYIYNNIGDTNSR-SFLGKV 90
           S  S+L   TL+  ++++  D   R +FLG+V
Sbjct: 76  S-KSQLETRTLQLSVWHH--DRFGRNTFLGEV 104

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 123

>gnl|CDD|176046 cd08401, C2A_RasA2_RasA3, C2 domain first repeat present in RasA2 and RasA3

 Score = 43.6 bits (103), Expect = 4e-05
 Identities = 31/119 (26%), Positives = 51/119 (42%), Gaps = 16/119 (13%)

Query: 609 HPMKTRDGRGTSDTYCVAKYGHKWV-RTRTLVDNLSPKYNEQYTWEVFDPATVLTVGVFD 667
            P K RD       YC      + V RT+T+  +L P + E + +E+      L+  ++D
Sbjct: 17  GPNKMRD------CYCTVNLDQEEVFRTKTVEKSLCPFFGEDFYFEIPRTFRHLSFYIYD 70

Query: 668 NSQLGEKSNGNKDLKIGKVRIRISTLETGRIYTHSYPLLVLHP-TGVKKMGELHLAIRF 725
              L       +D  IGKV I+   L         +PL  +   + V+  G++HL +R 
Sbjct: 71  RDVL------RRDSVIGKVAIKKEDLHKYYGKDTWFPLQPVDADSEVQ--GKVHLELRL 121

RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 121

>gnl|CDD|176000 cd04035, C2A_Rabphilin_Doc2, C2 domain first repeat present in Rabphilin and Double C2 domain

 Score = 43.4 bits (103), Expect = 5e-05
 Identities = 26/96 (27%), Positives = 41/96 (42%), Gaps = 16/96 (16%)

Query: 438 VNVVEAQDLVPTEKNHFPDVYVKAQI--GNQV---LKTKICQARTLSAVWNEDLLFVAAE 492
             ++ A+ L   + N   D YVK  +  G      L+TK    +T +  +NE L +    
Sbjct: 19  CTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKT-VHKTRNPEFNETLTYYGIT 77

Query: 493 PFED------HLVLTVEDRVGPGKDEIIGRVIIPLS 522
             ED       L++  EDR G   ++ +G   IPL 
Sbjct: 78  E-EDIQRKTLRLLVLDEDRFG---NDFLGETRIPLK 109

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 123

>gnl|CDD|176047 cd08402, C2B_Synaptotagmin-1, C2 domain second repeat present in Synaptotagmin 1

 Score = 43.5 bits (103), Expect = 5e-05
 Identities = 29/88 (32%), Positives = 47/88 (53%), Gaps = 6/88 (6%)

Query: 438 VNVVEAQDLVPTEKNHFPDVYVKAQI--GNQVLKTK--ICQARTLSAVWNEDLLF-VAAE 492
           V ++EA++L   +     D YVK  +    + LK K    + RTL+  +NE   F V  E
Sbjct: 19  VVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNESFSFEVPFE 78

Query: 493 PFED-HLVLTVEDRVGPGKDEIIGRVII 519
             +  HL++TV D    GK++ IG+V++
Sbjct: 79  QIQKVHLIVTVLDYDRIGKNDPIGKVVL 106

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136

>gnl|CDD|175992 cd04026, C2_PKC_alpha_gamma, C2 domain in Protein Kinase C (PKC) alpha and gamma

 Score = 43.4 bits (103), Expect = 6e-05
 Identities = 29/109 (26%), Positives = 48/109 (44%), Gaps = 12/109 (11%)

Query: 438 VNVVEAQDLVPTEKNHFPDVYVKAQI-----GNQVLKTKICQARTLSAVWNEDLLF-VAA 491
           V V EA++L+P + N   D YVK ++          KTK  +  TL+ VWNE   F +  
Sbjct: 17  VEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKK-TLNPVWNETFTFDLKP 75

Query: 492 EPFEDHLVLTVEDRVGPGKDEIIGRVIIPLSAIEKRADERIIHSRWFNL 540
              +  L + V D     +++ +G +   +S + K          W+ L
Sbjct: 76  ADKDRRLSIEVWDWDRTTRNDFMGSLSFGVSELIKM-----PVDGWYKL 119

A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology. Length = 131

>gnl|CDD|176073 cd08691, C2_NEDL1-like, C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1)

 Score = 43.5 bits (103), Expect = 6e-05
 Identities = 34/118 (28%), Positives = 46/118 (38%), Gaps = 24/118 (20%)

Query: 21  GKGSSSAFVELYFDGQRFRTTIKENDLNPVW-NESFYFNISDASKLHYLTLEAYIYNNIG 79
           GK        L   GQ  RT+I EN +NPVW  E F F       L    LE  + +   
Sbjct: 32  GKRHIFPA--LPHHGQECRTSIVENTINPVWHREQFVF-----VGLPTDVLEIEVKDKFA 84

Query: 80  DTNS--RSFLGKVCLTGNSFVPLSDSV--------VLHYPLEKRGIFSHVRGELGLKV 127
            +    R FLGK+       +P+   +         L Y L +R    HV G+L  + 
Sbjct: 85  KSRPIIRRFLGKLS------IPVQRLLERHAIGDQELSYTLGRRTPTDHVSGQLTFRF 136

NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 137

>gnl|CDD|175991 cd04025, C2B_RasA1_RasA4, C2 domain second repeat present in RasA1 and RasA4

 Score = 43.2 bits (102), Expect = 7e-05
 Identities = 28/105 (26%), Positives = 52/105 (49%), Gaps = 5/105 (4%)

Query: 436 VRVNVVEAQDLVPTEKNHFPDVYVKAQIGNQVLKTKICQARTLSAVWNEDLLFVAAEPFE 495
           +R +V+EA+DL P ++N   D +V+     Q L+T + + ++    WNE   F   E  +
Sbjct: 2   LRCHVLEARDLAPKDRNGTSDPFVRVFYNGQTLETSVVK-KSCYPRWNEVFEFELMEGAD 60

Query: 496 DHLVLTVEDRVGPGKDEIIGRVIIPLSAIEKRADERIIHSRWFNL 540
             L + V D     K++ +G+V+  +  +++   E      WF L
Sbjct: 61  SPLSVEVWDWDLVSKNDFLGKVVFSIQTLQQAKQEE----GWFRL 101

RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 123

>gnl|CDD|176048 cd08403, C2B_Synaptotagmin-3-5-6-9-10, C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10

 Score = 43.3 bits (102), Expect = 7e-05
 Identities = 26/102 (25%), Positives = 50/102 (49%), Gaps = 10/102 (9%)

Query: 5   KLGVQVVGAHNLLPKDGKGSSSAFVELYF--DGQRFR---TTIKENDLNPVWNESFYFNI 59
           +L + ++ A NL   D  G S  +V++    +G+R +   T++K+N LNP +NE+  F++
Sbjct: 15  RLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEALVFDV 74

Query: 60  SDASKLHY-LTLEAYIYNNIGDTNSRSFLGKVCLTGNSFVPL 100
              +  +  L +    Y+ +G       +G VC  G +    
Sbjct: 75  PPENVDNVSLIIAVVDYDRVGHN---ELIG-VCRVGPNADGQ 112

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 134

>gnl|CDD|176002 cd04037, C2E_Ferlin, C2 domain fifth repeat in Ferlin

 Score = 42.9 bits (102), Expect = 8e-05
 Identities = 23/90 (25%), Positives = 37/90 (41%), Gaps = 12/90 (13%)

Query: 602 ILNAVGLHPMKTRDGRGTSDTYCVAKYGHKWVRTR--TLVDNLSPKYNEQYTWEVFDP-A 658
           ++ A  L P   +D  G SD Y   K G K +  R   + + L+P + + +  E   P  
Sbjct: 6   VVRARNLQP---KDPNGKSDPYLKIKLGKKKINDRDNYIPNTLNPVFGKMFELEATLPGN 62

Query: 659 TVLTVGVFDNSQLGEKSNGNKDLKIGKVRI 688
           ++L + V D            D  IG+  I
Sbjct: 63  SILKISVMD------YDLLGSDDLIGETVI 86

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fifth C2 repeat, C2E, and has a type-II topology. Length = 124

>gnl|CDD|176014 cd04049, C2_putative_Elicitor-responsive_gene, C2 domain present in the putative elicitor-responsive gene

 Score = 42.7 bits (101), Expect = 9e-05
 Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 9/85 (10%)

Query: 272 LYVRVVKARELPAMDLTGSIDPFVEVKIGN--YK-GITKHYEKNQNPQWHQVFAF---SR 325
           L V ++ A+ L   D  G IDP+V ++      K  + K     +NP+W++ F F     
Sbjct: 3   LEVLLISAKGLQDTDFLGKIDPYVIIQCRTQERKSKVAK--GDGRNPEWNEKFKFTVEYP 60

Query: 326 DRMQASVLEVVIKDKDLV-KDDFVG 349
                + L + I DKD    DDF+G
Sbjct: 61  GWGGDTKLILRIMDKDNFSDDDFIG 85

In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members have a type-II topology. Length = 124

>gnl|CDD|176028 cd08382, C2_Smurf-like, C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins

 Score = 42.7 bits (101), Expect = 9e-05
 Identities = 29/126 (23%), Positives = 53/126 (42%), Gaps = 7/126 (5%)

Query: 5   KLGVQVVGAHNLLPKDGKGSSSAFVELYFDGQRFRTT-IKENDLNPVWNESFYFNISDAS 63
           K+ + V+ A  L  +D       F  +  DG +  +T + +  L+P WNE F   +  +S
Sbjct: 1   KVRLTVLCADGLAKRDLFRLPDPFAVITVDGGQTHSTDVAKKTLDPKWNEHFDLTVGPSS 60

Query: 64  KLHYLTLEAYIYNNIGDTNSRSFLGKVCLTGNSFVPLSDSVVLHYPLEKRGIFSH--VRG 121
            +     +   +          FLG V +  N+ +PL D+      L K     +  VRG
Sbjct: 61  IITIQVFDQKKFKKKDQ----GFLGCVRIRANAVLPLKDTGYQRLDLRKLKKSDNLSVRG 116

Query: 122 ELGLKV 127
           ++ + +
Sbjct: 117 KIVVSL 122

A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have type-II topology. Length = 123

>gnl|CDD|175993 cd04027, C2B_Munc13, C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins

 Score = 42.9 bits (101), Expect = 1e-04
 Identities = 30/101 (29%), Positives = 52/101 (51%), Gaps = 8/101 (7%)

Query: 598 LELGILNAVGLHPMKTRDGRGTSDTYCVAKYGHKWVRTRTLVDNLSPKYNEQYTWEVFDP 657
           + + ++ A GL     +D  GTSD Y   + G    RT+T+  NL+P +NE++ +E  + 
Sbjct: 3   ISITVVCAQGL---IAKDKTGTSDPYVTVQVGKTKKRTKTIPQNLNPVWNEKFHFECHNS 59

Query: 658 ATVLTVGVFD-----NSQLGEKSNGNKDLKIGKVRIRISTL 693
           +  + V V+D      S+L +K     D  +G+  I + TL
Sbjct: 60  SDRIKVRVWDEDDDIKSRLKQKFTRESDDFLGQTIIEVRTL 100

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 127

>gnl|CDD|175997 cd04031, C2A_RIM1alpha, C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins

 Score = 41.8 bits (99), Expect = 2e-04
 Identities = 32/125 (25%), Positives = 61/125 (48%), Gaps = 22/125 (17%)

Query: 432 RLWYVR------VNVVEAQDLVPTEKNHFPDVYVKAQI------GNQVLKTKICQARTLS 479
           +LWY +      V V++A+DL P +     + YVK  +       ++  +TK  + +TL+
Sbjct: 8   QLWYDKVTSQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKR-RTKTVK-KTLN 65

Query: 480 AVWNEDLLF--VAAEPFEDH-LVLTVEDRVGPGKDEIIGRVIIPLSAIEKRADERIIHSR 536
             WN+   +  V  E  ++  L +TV D    G+++ +G V+I L+  +   D+      
Sbjct: 66  PEWNQTFEYSNVRRETLKERTLEVTVWDYDRDGENDFLGEVVIDLA--DALLDDE---PH 120

Query: 537 WFNLE 541
           W+ L+
Sbjct: 121 WYPLQ 125

RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology and do not bind Ca2+. Length = 125

>gnl|CDD|176021 cd08375, C2_Intersectin, C2 domain present in Intersectin

 Score = 42.4 bits (100), Expect = 2e-04
 Identities = 18/57 (31%), Positives = 28/57 (49%)

Query: 5  KLGVQVVGAHNLLPKDGKGSSSAFVELYFDGQRFRTTIKENDLNPVWNESFYFNISD 61
          +L V +V   +L P +  G S  + E+    Q  +T +  + LNP WN S  F + D
Sbjct: 16 RLMVVIVEGRDLKPCNSNGKSDPYCEVSMGSQEHKTKVVSDTLNPKWNSSMQFFVKD 72

A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. The members here have topology I. Length = 136

>gnl|CDD|176000 cd04035, C2A_Rabphilin_Doc2, C2 domain first repeat present in Rabphilin and Double C2 domain

 Score = 41.9 bits (99), Expect = 2e-04
 Identities = 17/66 (25%), Positives = 27/66 (40%), Gaps = 6/66 (9%)

Query: 3  NLKLGVQVVGAHNLLPKDGKGSSSAFVELYF-----DGQRFRTTIKENDLNPVWNESF-Y 56
          N  L   ++ A  L   D  G S  +V+L          + RT       NP +NE+  Y
Sbjct: 14 NSALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTY 73

Query: 57 FNISDA 62
          + I++ 
Sbjct: 74 YGITEE 79

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 123

>gnl|CDD|176011 cd04046, C2_Calpain, C2 domain present in Calpain proteins

 Score = 41.9 bits (99), Expect = 2e-04
 Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 3/48 (6%)

Query: 602 ILNAVGLHPMKTRDGRGTSDTYCVAKYGHKWVRTRTLVDNLSPKYNEQ 649
           + +A GL     +D  G +D Y + K   + VR+    D LSP+++ Q
Sbjct: 9   VHSAEGL---SKQDSGGGADPYVIIKCEGESVRSPVQKDTLSPEFDTQ 53

A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 126

>gnl|CDD|175974 cd00275, C2_PLC_like, C2 domain present in Phosphoinositide-specific phospholipases C (PLC)

 Score = 41.8 bits (99), Expect = 2e-04
 Identities = 31/106 (29%), Positives = 52/106 (49%), Gaps = 16/106 (15%)

Query: 272 LYVRVVKARELP--AMDLTGSIDPFVEVKI------GNYKGITKHYEKN-QNPQWHQVFA 322
           L ++++  ++LP    D    +DP+VEV+I       + K  TK  + N  NP W++ F 
Sbjct: 4   LTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFE 63

Query: 323 FSRDRMQASVLEVVIKDKDLVKDDFVG--IVRFD-INE----VPLR 361
           F     + + L  V+ D+D   DDF+G   +  D + +    VPL 
Sbjct: 64  FDVTVPELAFLRFVVYDEDSGDDDFLGQACLPLDSLRQGYRHVPLL 109

PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-II topology. Length = 128

>gnl|CDD|176008 cd04043, C2_Munc13_fungal, C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group

 Score = 41.9 bits (99), Expect = 2e-04
 Identities = 19/80 (23%), Positives = 32/80 (40%), Gaps = 4/80 (5%)

Query: 271 FLY-VRVVKARELPAMDLTGSIDPFVEVKIGNYK---GITKHYEKNQNPQWHQVFAFSRD 326
            L+ +R+V+A  L A    G  DP+V +   N K     T+      NP+W + F     
Sbjct: 1   HLFTIRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEEFELEVP 60

Query: 327 RMQASVLEVVIKDKDLVKDD 346
             +   +   + D+  V   
Sbjct: 61  AGEPLWISATVWDRSFVGKH 80

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 126

>gnl|CDD|176049 cd08404, C2B_Synaptotagmin-4, C2 domain second repeat present in Synaptotagmin 4

 Score = 42.0 bits (99), Expect = 2e-04
 Identities = 23/64 (35%), Positives = 36/64 (56%), Gaps = 5/64 (7%)

Query: 5  KLGVQVVGAHNLLPKDGKGSSSAFVE--LYFDGQRF---RTTIKENDLNPVWNESFYFNI 59
          +L V V+ A +L   D  G +  +V+  LY+  +R    +T +K+  LNPV+NESF F+I
Sbjct: 16 RLTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNESFVFDI 75

Query: 60 SDAS 63
              
Sbjct: 76 PSEE 79

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136

>gnl|CDD|176029 cd08383, C2A_RasGAP, C2 domain (first repeat) of Ras GTPase activating proteins (GAPs)

 Score = 41.5 bits (98), Expect = 2e-04
 Identities = 24/91 (26%), Positives = 38/91 (41%), Gaps = 11/91 (12%)

Query: 6  LGVQVVGAHNLLPKDGKGSSSAFVELYFDG-QRFRTTIKENDLNPVWNESFYFNI-SDAS 63
          L ++++ A NL  K   G+   +  +  D  +  RT   E  LNP W E F F+      
Sbjct: 2  LRLRILEAKNLPSK---GTRDPYCTVSLDQVEVARTKTVE-KLNPFWGEEFVFDDPPPDV 57

Query: 64 KLHYLTLEAYIYNNIGDT-NSRSFLGKVCLT 93
              L+     YN    + +    +GKV L+
Sbjct: 58 TFFTLSF----YNKDKRSKDRDIVIGKVALS 84

RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology. Length = 117

>gnl|CDD|176060 cd08678, C2_C21orf25-like, C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein

 Score = 41.6 bits (98), Expect = 2e-04
 Identities = 26/83 (31%), Positives = 44/83 (53%), Gaps = 9/83 (10%)

Query: 8  VQVVGAHNLLPKDGKGSSSAFVELYFD--GQRFRTTIKENDLNPVWNESFYFNISDASKL 65
          V+ + A+ L   +  GSS+ +  L  D   Q+++++ ++N  NP W+E F F +S  SK 
Sbjct: 3  VKNIKANGLS--EAAGSSNPYCVLEMDEPPQKYQSSTQKNTSNPFWDEHFLFELSPNSK- 59

Query: 66 HYLTLEAYIYNNIGDTNSRSFLG 88
              L   +Y+N G  +   FLG
Sbjct: 60 ---ELLFEVYDN-GKKSDSKFLG 78

The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 126

>gnl|CDD|176016 cd04051, C2_SRC2_like, C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins

 Score = 41.4 bits (98), Expect = 2e-04
 Identities = 22/92 (23%), Positives = 36/92 (39%), Gaps = 5/92 (5%)

Query: 438 VNVVEAQDLVPTEKNHFPDVYVKAQI-GNQVLKTKICQARTLSAVWNEDLLFV--AAEPF 494
           + ++ A+DL          VY    I  +    T + +    +  WNE L F        
Sbjct: 4   ITIISAEDLKNVNLFGKMKVYAVVWIDPSHKQSTPVDRDGGTNPTWNETLRFPLDERLLQ 63

Query: 495 EDHLVLTVE--DRVGPGKDEIIGRVIIPLSAI 524
           +  L LT+E         D++IG V +PL  +
Sbjct: 64  QGRLALTIEVYCERPSLGDKLIGEVRVPLKDL 95

SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 125

>gnl|CDD|176009 cd04044, C2A_Tricalbin-like, C2 domain first repeat present in Tricalbin-like proteins

 Score = 41.4 bits (98), Expect = 3e-04
 Identities = 38/136 (27%), Positives = 55/136 (40%), Gaps = 19/136 (13%)

Query: 595 IGILELGILNAVGLHPMKTRD-GRGTSDTYCVAKYGHKWV--RTRTLVDNLSPKYNEQYT 651
           IG+L + I +A GL   K  D   GT D Y      ++    RT+   D  +P +NE   
Sbjct: 1   IGVLAVTIKSARGL---KGSDIIGGTVDPYVTFSISNRRELARTKVKKDTSNPVWNETKY 57

Query: 652 WEVFDPATVLTVGVFDNSQLGEKSNG-NKDLKIGKVRIRISTLETGRIYTH-SYPLLVLH 709
             V      L + V+D        N   KD  IG     +S+L       + +  LL   
Sbjct: 58  ILVNSLTEPLNLTVYDF-------NDKRKDKLIGTAEFDLSSLLQNPEQENLTKNLLR-- 108

Query: 710 PTGVKKMGELHLAIRF 725
               K +GEL+  +RF
Sbjct: 109 --NGKPVGELNYDLRF 122

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 124

>gnl|CDD|175978 cd04011, C2B_Ferlin, C2 domain second repeat in Ferlin

 Score = 40.6 bits (96), Expect = 3e-04
 Identities = 25/86 (29%), Positives = 38/86 (44%), Gaps = 9/86 (10%)

Query: 434 WYVRVNVVEAQDLVPTEKNHFPDVYVKAQIGNQVLKTKICQARTLSAVWNEDLLF----V 489
           + VRV V+EA+ LV        D  VK ++G Q   T + +  T    +NE   F     
Sbjct: 4   FQVRVRVIEARQLVGGNI----DPVVKVEVGGQKKYTSV-KKGTNCPFYNEYFFFNFHES 58

Query: 490 AAEPFEDHLVLTVEDRVGPGKDEIIG 515
             E F+  + ++V D      D +IG
Sbjct: 59  PDELFDKIIKISVYDSRSLRSDTLIG 84

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 111

>gnl|CDD|176012 cd04047, C2B_Copine, C2 domain second repeat in Copine

 Score = 41.0 bits (97), Expect = 3e-04
 Identities = 27/93 (29%), Positives = 38/93 (40%), Gaps = 19/93 (20%)

Query: 13 AHNLLPKDGKGSSSAFVELYF---DGQR---FRTTIKENDLNPVWNESFYFNISDASKLH 66
             L  KD  G S  F+E+     DG     +RT + +N LNPVW     F I    KL 
Sbjct: 9  GKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWKP---FTIP-LQKLC 64

Query: 67 Y------LTLEAYIYNNIGDTNSRSFLGKVCLT 93
                 + +E Y Y++ G       +G+   T
Sbjct: 65 NGDYDRPIKIEVYDYDSSGK---HDLIGEFETT 94

There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 110

>gnl|CDD|176013 cd04048, C2A_Copine, C2 domain first repeat in Copine

 Score = 41.4 bits (98), Expect = 3e-04
 Identities = 23/94 (24%), Positives = 36/94 (38%), Gaps = 12/94 (12%)

Query: 277 VKARELPAMDLTGSIDPFVEVKI--GNYKGITKH-----YEKNQNPQWHQVFAF-----S 324
           +  R L   D+    DPFV V +  G      +       + N NP +   F        
Sbjct: 7   ISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFEE 66

Query: 325 RDRMQASVLEVVIKDKDLVKDDFVGIVRFDINEV 358
             +++  V +V  K KDL   DF+G     + E+
Sbjct: 67  VQKLRFEVYDVDSKSKDLSDHDFLGEAECTLGEI 100

There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 120

>gnl|CDD|175985 cd04018, C2C_Ferlin, C2 domain third repeat in Ferlin

 Score = 41.8 bits (99), Expect = 3e-04
 Identities = 25/102 (24%), Positives = 42/102 (41%), Gaps = 30/102 (29%)

Query: 271 FLYVRVVKARELPAMD--LTGSI------------DPFVEVKIGNYKGITKHYEKNQNPQ 316
               ++ +A +LP MD  +  ++            DP+VEV     K  T   + + NP+
Sbjct: 1   RFIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFAGQKVKTSVKKNSYNPE 60

Query: 317 WHQVFAFS--------RDRMQASVLEVVIKDKDLV-KDDFVG 349
           W++   F         R ++Q       I+D D V  DD +G
Sbjct: 61  WNEQIVFPEMFPPLCERIKIQ-------IRDWDRVGNDDVIG 95

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 151

>gnl|CDD|176055 cd08410, C2B_Synaptotagmin-17, C2 domain second repeat present in Synaptotagmin 17

 Score = 41.4 bits (97), Expect = 3e-04
 Identities = 28/88 (31%), Positives = 47/88 (53%), Gaps = 6/88 (6%)

Query: 438 VNVVEAQDLVPTEKNHFPDVYVKAQI--GNQVLKTK--ICQARTLSAVWNEDLLF-VAAE 492
           V+++ A+ L+ T+ +   D +VK Q+  G +++KTK   C   T+   +NE   F V  E
Sbjct: 18  VDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKTSCMRGTIDPFYNESFSFKVPQE 77

Query: 493 PFED-HLVLTVEDRVGPGKDEIIGRVII 519
             E+  LV TV        ++ IGR++I
Sbjct: 78  ELENVSLVFTVYGHNVKSSNDFIGRIVI 105

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 135

>gnl|CDD|176064 cd08682, C2_Rab11-FIP_classI, C2 domain found in Rab11-family interacting proteins (FIP) class I

 Score = 40.9 bits (96), Expect = 4e-04
 Identities = 34/126 (26%), Positives = 59/126 (46%), Gaps = 11/126 (8%)

Query: 274 VRVVKARELPAMDLTGSIDPFVEVKIGNYKGITKHYEKNQNPQWHQVFAF------SRDR 327
           V V++AR L     +G+ D +V +++G  K  T   EK  +P W +  +F      S + 
Sbjct: 3   VTVLQARGLLCKGKSGTNDAYVIIQLGKEKYSTSVKEKTTSPVWKEECSFELPGLLSGNG 62

Query: 328 MQASVLEVVIKDKDLVKDDFVGIVRFDINEVPLRVPPDSPLAPEWYRLEDKKGEKIK--G 385
            +A++   V+    L  D F+G V   +N+  L           W++LE K G+  K  G
Sbjct: 63  NRATLQLTVMHRNLLGLDKFLGQVSIPLND--LDEDKGRRRT-RWFKLESKPGKDDKERG 119

Query: 386 ELMLAV 391
           E+ + +
Sbjct: 120 EIEVDI 125

Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The members in this CD are class I FIPs. The exact function of the Rab11 and FIP interaction is unknown, but there is speculation that it involves the role of forming a targeting complex that recruits a group of proteins involved in membrane transport to organelles. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 126

>gnl|CDD|176007 cd04042, C2A_MCTP_PRT, C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

 Score = 41.1 bits (97), Expect = 4e-04
 Identities = 22/71 (30%), Positives = 39/71 (54%), Gaps = 3/71 (4%)

Query: 5  KLGVQVVGAHNLLPKDGKGSSSAFVELYFDG-QRFRT-TIKENDLNPVWNESFYFNISDA 62
          +L + +    NL  +D  G+S  +V+  + G   +++ TI +N LNPVW+E F   I D 
Sbjct: 1  QLDIHLKEGRNLAARDRGGTSDPYVKFKYGGKTVYKSKTIYKN-LNPVWDEKFTLPIEDV 59

Query: 63 SKLHYLTLEAY 73
          ++  Y+ +  Y
Sbjct: 60 TQPLYIKVFDY 70

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 121

>gnl|CDD|176040 cd08394, C2A_Munc13, C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins

 Score = 41.3 bits (97), Expect = 4e-04
 Identities = 27/91 (29%), Positives = 42/91 (46%), Gaps = 5/91 (5%)

Query: 269 MYFLYVRVVKARELPAMDLTGSIDPFVEVKIGNYKGITKHYEKNQNPQWHQVFAFSRDRM 328
           M  L V V KA+   A D     + +V +K+ N K  T     +Q P W Q F F  +R+
Sbjct: 1   MSLLCVLVKKAKLDGAPD---KFNTYVTLKVQNVKSTTIAVRGSQ-PCWEQDFMFEINRL 56

Query: 329 QASVLEVVIKDKDLVKDDFVGIVRFDINEVP 359
               L + + +K L+ D  VG V   ++ + 
Sbjct: 57  DLG-LVIELWNKGLIWDTLVGTVWIPLSTIR 86

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 127

>gnl|CDD|175993 cd04027, C2B_Munc13, C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins

 Score = 40.6 bits (95), Expect = 5e-04
 Identities = 31/117 (26%), Positives = 50/117 (42%), Gaps = 17/117 (14%)

Query: 436 VRVNVVEAQDLVPTEKNHFPDVYVKAQIGNQVLKTKICQARTLSAVWNEDLLF------- 488
           + + VV AQ L+  +K    D YV  Q+G    +TK    + L+ VWNE   F       
Sbjct: 3   ISITVVCAQGLIAKDKTGTSDPYVTVQVGKTKKRTKTIP-QNLNPVWNEKFHFECHNSSD 61

Query: 489 ---VAAEPFEDHLVLTVEDRVGPGKDEIIGRVIIPLSAIEKRADERIIHSRWFNLEK 542
              V     +D +   ++ +     D+ +G+ II +  +    D       W+NLEK
Sbjct: 62  RIKVRVWDEDDDIKSRLKQKFTRESDDFLGQTIIEVRTLSGEMDV------WYNLEK 112

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 127

>gnl|CDD|227371 COG5038, COG5038, Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]

 Score = 44.0 bits (104), Expect = 5e-04
 Identities = 25/90 (27%), Positives = 42/90 (46%), Gaps = 8/90 (8%)

Query: 6   LGVQVVGAHNLLPKDG--KGSSSAFVELYFDGQRF-RTTIKENDLNPVWNESFYFNISDA 62
           + V++  A  L   D    G+   ++ + F  +   +T +K+N LNPVWNE+FY  ++  
Sbjct: 438 VEVKIKSAEGLKKSDSTINGTVDPYITVTFSDRVIGKTRVKKNTLNPVWNETFYILLNSF 497

Query: 63  SKLHYLTLEAYIYNNIGDTNSRSFLGKVCL 92
           +    L L  Y +N      S   +G   L
Sbjct: 498 TD--PLNLSLYDFN---SFKSDKVVGSTQL 522

Length = 1227

>gnl|CDD|176017 cd04052, C2B_Tricalbin-like, C2 domain second repeat present in Tricalbin-like proteins

 Score = 40.3 bits (95), Expect = 5e-04
 Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 1/43 (2%)

Query: 23 GSSSAFVELYFDGQR-FRTTIKENDLNPVWNESFYFNISDASK 64
          G  S + ELY +G+  + T +K+   NP WN S  F ++D  K
Sbjct: 11 GLLSPYAELYLNGKLVYTTRVKKKTNNPSWNASTEFLVTDRRK 53

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 111

>gnl|CDD|176014 cd04049, C2_putative_Elicitor-responsive_gene, C2 domain present in the putative elicitor-responsive gene

 Score = 40.4 bits (95), Expect = 6e-04
 Identities = 20/73 (27%), Positives = 29/73 (39%), Gaps = 3/73 (4%)

Query: 455 PDVYVKAQIGNQVLKTKICQARTLSAVWNEDLLFVAAEPFED---HLVLTVEDRVGPGKD 511
            D YV  Q   Q  K+K+ +    +  WNE   F    P       L+L + D+     D
Sbjct: 22  IDPYVIIQCRTQERKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKDNFSDD 81

Query: 512 EIIGRVIIPLSAI 524
           + IG   I L  +
Sbjct: 82  DFIGEATIHLKGL 94

In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members have a type-II topology. Length = 124

>gnl|CDD|176022 cd08376, C2B_MCTP_PRT, C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

 Score = 39.9 bits (94), Expect = 7e-04
 Identities = 25/105 (23%), Positives = 44/105 (41%), Gaps = 5/105 (4%)

Query: 8   VQVVGAHNLLPKDGKGSSSAFVELYFDGQRFRTTIKENDLNPVWNESFYFNISDASKLHY 67
           + +V   NL P D  G S  +V+     +++++ +    LNP W E F  ++ D      
Sbjct: 4   IVLVEGKNLPPMDDNGLSDPYVKFRLGNEKYKSKVCSKTLNPQWLEQFDLHLFDDQS-QI 62

Query: 68  LTLEAYIYNNIGDTNSRSFLGKVCLTGNSFVPLSDSVVLHYPLEK 112
           L +E +  +         F+G+ C    S +P   +  L   LE 
Sbjct: 63  LEIEVWDKDT---GKKDEFIGR-CEIDLSALPREQTHSLELELED 103

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 116

>gnl|CDD|176036 cd08390, C2A_Synaptotagmin-15-17, C2A domain first repeat present in Synaptotagmins 15 and 17

 Score = 39.9 bits (94), Expect = 8e-04
 Identities = 27/102 (26%), Positives = 47/102 (46%), Gaps = 12/102 (11%)

Query: 5   KLGVQVVGAHNLLPKDG-KGSSSAFVELY---FDGQRFRTTIKENDLNPVWNESFYFNIS 60
           +L V ++ A NL P+         FV++     + +  ++ +K    NP ++E+F F +S
Sbjct: 15  QLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDERRSLQSKVKRKTQNPNFDETFVFQVS 74

Query: 61  DASKLHYLTLEAYIYNNIGDTNSRSFLGKVCLTGNSFVPLSD 102
              +L   TL   +Y+   D  SR      C+ G+   PL D
Sbjct: 75  -FKELQRRTLRLSVYDV--DRFSRH-----CIIGHVLFPLKD 108

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 123

>gnl|CDD|176003 cd04038, C2_ArfGAP, C2 domain present in Arf GTPase Activating Proteins (GAP)

 Score = 40.0 bits (94), Expect = 0.001
 Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 3/69 (4%)

Query: 5  KLGVQVVGAHNLLPKDGKGSSSAFVELYFDGQRFRTTIKENDLNPVWNESFYFNISDASK 64
           L V+VV   NL  +D   SS  +V L    Q+ +T + + +LNPVWNE    ++ +   
Sbjct: 3  LLKVRVVRGTNLAVRDFT-SSDPYVVLTLGNQKVKTRVIKKNLNPVWNEELTLSVPNPMA 61

Query: 65 LHYLTLEAY 73
             L LE +
Sbjct: 62 P--LKLEVF 68

ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 145

>gnl|CDD|176005 cd04040, C2D_Tricalbin-like, C2 domain fourth repeat present in Tricalbin-like proteins

 Score = 39.5 bits (93), Expect = 0.001
 Identities = 32/112 (28%), Positives = 48/112 (42%), Gaps = 15/112 (13%)

Query: 598 LELGILNAVGLHPMKTRDGRGTSDTYCVAKY-GHKWVRTRTLVDNLSPKYNEQYTWEVFD 656
           L + +++A  L      D  G SD +      G K  +T+T+   L+P +NE +   V  
Sbjct: 1   LTVDVISAENLPSA---DRNGKSDPFVKFYLNGEKVFKTKTIKKTLNPVWNESFEVPV-- 55

Query: 657 P---ATVLTVGVFDNSQLGEKSNGNKDLKIGKVRIRISTLETGRIYTHSYPL 705
           P     VL V V+D  +      G KD  +G   I +S LE       + PL
Sbjct: 56  PSRVRAVLKVEVYDWDR------GGKDDLLGSAYIDLSDLEPEETTELTLPL 101

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fifth C2 repeat, C2E, and has a type-II topology. Length = 115

>gnl|CDD|176015 cd04050, C2B_Synaptotagmin-like, C2 domain second repeat present in Synaptotagmin-like proteins

 Score = 39.5 bits (93), Expect = 0.001
 Identities = 23/76 (30%), Positives = 34/76 (44%), Gaps = 4/76 (5%)

Query: 271 FLYVRVVKARELPAMDLTGSIDPFVEVKIGNYKGITKHYEKNQNPQWHQVFAF--SRDRM 328
            L+V +  A+ LP    T    P+VE+ +G     +K  E+  NP W + F F       
Sbjct: 1   LLFVYLDSAKNLPLAKSTKEPSPYVELTVGKTTQKSKVKERTNNPVWEEGFTFLVRNPEN 60

Query: 329 QASVLEVVIKDKDLVK 344
           Q   LE+ +KD    K
Sbjct: 61  Q--ELEIEVKDDKTGK 74

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 105

>gnl|CDD|175985 cd04018, C2C_Ferlin, C2 domain third repeat in Ferlin

 Score = 39.9 bits (94), Expect = 0.001
 Identities = 15/41 (36%), Positives = 23/41 (56%)

Query: 19 KDGKGSSSAFVELYFDGQRFRTTIKENDLNPVWNESFYFNI 59
           + K     +VE+ F GQ+ +T++K+N  NP WNE   F  
Sbjct: 29 GEKKELVDPYVEVSFAGQKVKTSVKKNSYNPEWNEQIVFPE 69

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 151

>gnl|CDD|176034 cd08388, C2A_Synaptotagmin-4-11, C2A domain first repeat present in Synaptotagmins 4 and 11

 Score = 39.6 bits (93), Expect = 0.001
 Identities = 27/97 (27%), Positives = 50/97 (51%), Gaps = 8/97 (8%)

Query: 272 LYVRVVKARELPAMDL-TGSIDPFVEVKI---GNYKGITKHYEKNQNPQWHQVFAF---S 324
           L V +++ R+LPAMD  +G+ DP+V++++     +K  T+   K +NP + + F F    
Sbjct: 18  LLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKEHKVKTRVLRKTRNPVYDETFTFYGIP 77

Query: 325 RDRMQASVLEVVIKDKD-LVKDDFVGIVRFDINEVPL 360
            +++Q   L   +   D   +DD +G V   +    L
Sbjct: 78  YNQLQDLSLHFAVLSFDRYSRDDVIGEVVCPLAGADL 114

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 128

>gnl|CDD|175995 cd04029, C2A_SLP-4_5, C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5

 Score = 39.3 bits (92), Expect = 0.001
 Identities = 35/113 (30%), Positives = 57/113 (50%), Gaps = 15/113 (13%)

Query: 6   LGVQVVGAHNLLPKD-GKGSSSAFVELYF------DGQRFRTTIKENDLNPVWNESFYFN 58
           L V V    NL   D  K  S+ +V+ Y         +R +T+IK N  NPV+NE+  ++
Sbjct: 17  LNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKSRQSKR-KTSIKRNTTNPVYNETLKYS 75

Query: 59  ISDASKLHYLTLEAYIYNNIGDTNSR-SFLGKVCLTGNSF---VPLSDSVVLH 107
           IS  S+L   TL+  +++   D   R +FLG+V +  +S+       + + LH
Sbjct: 76  ISH-SQLETRTLQLSVWHY--DRFGRNTFLGEVEIPLDSWNFDSQHEECLPLH 125

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 125

>gnl|CDD|175976 cd04009, C2B_Munc13-like, C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins

 Score = 39.1 bits (92), Expect = 0.002
 Identities = 28/112 (25%), Positives = 52/112 (46%), Gaps = 16/112 (14%)

Query: 426 KVYHSPRLWYVRVNVVEAQDLVPTEKNHFPDVYVKAQI-------GNQVLKTKICQARTL 478
           K Y+      +RV ++ A++L+P + N   D +VK ++            KT++ + +TL
Sbjct: 8   KAYYRASEQSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQV-KKKTL 66

Query: 479 SAVWNEDLLFVAAEPFEDH------LVLTVEDRVGPGKDEIIGRVIIPLSAI 524
             +++E   F    P E        L+ TV+D    G ++  G   +PL+ I
Sbjct: 67  FPLFDE--SFEFNVPPEQCSVEGALLLFTVKDYDLLGSNDFEGEAFLPLNDI 116

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 133

>gnl|CDD|176011 cd04046, C2_Calpain, C2 domain present in Calpain proteins

 Score = 38.8 bits (91), Expect = 0.002
 Identities = 19/96 (19%), Positives = 36/96 (37%), Gaps = 3/96 (3%)

Query: 274 VRVVKARELPAMDLTGSIDPFVEVKIGNYKGITKHYEKNQNPQWHQVFAF-SRDRMQASV 332
           V V  A  L   D  G  DP+V +K       +   +   +P++     F  +       
Sbjct: 7   VHVHSAEGLSKQDSGGGADPYVIIKCEGESVRSPVQKDTLSPEFDTQAIFYRKKPRSPIK 66

Query: 333 LEVVIKDKDLVKDDFVGIVRFDINEVPLRVPPDSPL 368
           ++V   + +L+ D+F+G      +    +     PL
Sbjct: 67  IQVW--NSNLLCDEFLGQATLSADPNDSQTLRTLPL 100

A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 126

>gnl|CDD|175996 cd04030, C2C_KIAA1228, C2 domain third repeat present in uncharacterized human KIAA1228-like proteins

 Score = 38.8 bits (91), Expect = 0.002
 Identities = 27/125 (21%), Positives = 56/125 (44%), Gaps = 19/125 (15%)

Query: 428 YHSPRLWYVRVNVV--EAQDLVPTEKNHFPDVYVKA-----QIGNQVLKTKICQARTLSA 480
           Y S R    ++ V   + ++L P + +  PD YV+      +  +   KT + +   L+ 
Sbjct: 11  YSSQR---QKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKK-DNLNP 66

Query: 481 VWNEDLLFV--AAEPFEDHLVLTVEDRVG--PGKDEIIGRVIIPLSAIEKRADERIIHSR 536
           V++E   F     E     L + V++       + +++G+V+I LS +    D     ++
Sbjct: 67  VFDETFEFPVSLEELKRRTLDVAVKNSKSFLSREKKLLGQVLIDLSDL----DLSKGFTQ 122

Query: 537 WFNLE 541
           W++L 
Sbjct: 123 WYDLT 127

KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 127

>gnl|CDD|175984 cd04017, C2D_Ferlin, C2 domain fourth repeat in Ferlin

 Score = 39.1 bits (92), Expect = 0.002
 Identities = 31/124 (25%), Positives = 58/124 (46%), Gaps = 22/124 (17%)

Query: 434 WYVRVNVVEAQDLVPTEKNHFPDVYVKAQIGNQVLKTKICQARTLSAVWNEDLLF----- 488
           + +R  + +A+DL+  +K+   D + +    NQ  +T++ +  TLS  W++ L+F     
Sbjct: 1   FQLRAYIYQARDLLAADKSGLSDPFARVSFLNQSQETEVIK-ETLSPTWDQTLIFDEVEL 59

Query: 489 ------VAAEPFEDHLVLTV--EDRVGPGKDEIIGRVIIPLSAIEKRADERII--HSRWF 538
                 +A  P    +V+ +  +D V  GKDE +GR +     + K   E       +WF
Sbjct: 60  YGSPEEIAQNP--PLVVVELFDQDSV--GKDEFLGRSVA--KPLVKLDLEEDFPPKLQWF 113

Query: 539 NLEK 542
            + K
Sbjct: 114 PIYK 117

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fourth C2 repeat, C2D, and has a type-II topology. Length = 135

>gnl|CDD|175987 cd04020, C2B_SLP_1-2-3-4, C2 domain second repeat present in Synaptotagmin-like proteins 1-4

 Score = 39.6 bits (93), Expect = 0.002
 Identities = 30/101 (29%), Positives = 50/101 (49%), Gaps = 9/101 (8%)

Query: 5   KLGVQVVGAHNLLPKDGKGSSSAFVELYF--DGQ---RFRTTIKENDLNPVWNESFYFNI 59
           +L V V  A NL      G+S +FV+ Y   D     + +T + +  +NPVWN +F ++ 
Sbjct: 28  ELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQKTPVVKKSVNPVWNHTFVYDG 87

Query: 60  SDASKLHYLTLEAYIYNNIGDTNSRSFLGKVCL---TGNSF 97
                L    LE  ++++   +++  FLG V L   TG S+
Sbjct: 88  VSPEDLSQACLELTVWDHDKLSSND-FLGGVRLGLGTGKSY 127

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 162

>gnl|CDD|176034 cd08388, C2A_Synaptotagmin-4-11, C2A domain first repeat present in Synaptotagmins 4 and 11

 Score = 38.9 bits (91), Expect = 0.002
 Identities = 30/110 (27%), Positives = 57/110 (51%), Gaps = 14/110 (12%)

Query: 437 RVNVVEAQDLVPT-EKNHFPDVYVKAQI----GNQVLKTKICQARTLSAVWNEDLLF--V 489
            VN++E +DL    E++   D YVK Q+     ++V KT++ + +T + V++E   F  +
Sbjct: 19  LVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKEHKV-KTRVLR-KTRNPVYDETFTFYGI 76

Query: 490 AAEPFED---HLVLTVEDRVGPGKDEIIGRVIIPLSAIEKRADERIIHSR 536
                +D   H  +   DR    +D++IG V+ PL+  +   +  ++ SR
Sbjct: 77  PYNQLQDLSLHFAVLSFDRYS--RDDVIGEVVCPLAGADLLNEGELLVSR 124

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 128

>gnl|CDD|175981 cd04014, C2_PKC_epsilon, C2 domain in Protein Kinase C (PKC) epsilon

 Score = 39.6 bits (93), Expect = 0.002
 Identities = 31/121 (25%), Positives = 50/121 (41%), Gaps = 22/121 (18%)

Query: 435 YVRVNVVEAQDLVPTE--KNHFP--------DVYVKAQIGNQVL-KTKICQARTLSAVWN 483
            +++ + EA DL PT+    H          D YV   + +  + KT   + +T S VWN
Sbjct: 5   TLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVDDTHIGKTST-KPKTNSPVWN 63

Query: 484 EDLLFVAAEPFEDHLVLTV--EDRVGPGKDEIIGRVIIPLSAIEKRADERIIHSR-WFNL 540
           E+  F        +L LTV  +  +GP  D+ +    I    + +R          W +L
Sbjct: 64  EE--FTTEVHNGRNLELTVFHDAAIGP--DDFVANCTISFEDLIQRGSG---SFDLWVDL 116

Query: 541 E 541
           E
Sbjct: 117 E 117

A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-II topology. Length = 132

>gnl|CDD|176054 cd08409, C2B_Synaptotagmin-15, C2 domain second repeat present in Synaptotagmin 15

 Score = 39.2 bits (92), Expect = 0.002
 Identities = 30/97 (30%), Positives = 49/97 (50%), Gaps = 7/97 (7%)

Query: 429 HSPRLWYVRVNVVEAQDLVPTEKNHFPDVYVKA--QIGNQVLKTKICQARTLSA--VWNE 484
           ++P L  + V V+ A+ L   +  H   VYVK    I N+V+KTK  +    +A   +NE
Sbjct: 10  YNPTLNRLTVVVLRARGLRQLDHAH-TSVYVKVSLMIHNKVVKTKKTEVVDGAASPSFNE 68

Query: 485 DLLF-VAAEPFEDH-LVLTVEDRVGPGKDEIIGRVII 519
              F V +   +   L L+V    G  K +++GRV++
Sbjct: 69  SFSFKVTSRQLDTASLSLSVMQSGGVRKSKLLGRVVL 105

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 137

>gnl|CDD|176031 cd08385, C2A_Synaptotagmin-1-5-6-9-10, C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10

 Score = 38.4 bits (90), Expect = 0.003
 Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 4/73 (5%)

Query: 6  LGVQVVGAHNLLPKDGKGSSSAFVELYFDGQR---FRTTIKENDLNPVWNESFYFNISDA 62
          L V ++ A +L   D  G+S  +V++Y    +   F T +    LNPV+NE+F F +   
Sbjct: 18 LTVGIIQAADLPAMDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFTFKVP-Y 76

Query: 63 SKLHYLTLEAYIY 75
          S+L   TL   +Y
Sbjct: 77 SELGNKTLVFSVY 89

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 124

>gnl|CDD|176016 cd04051, C2_SRC2_like, C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins

 Score = 38.4 bits (90), Expect = 0.003
 Identities = 23/116 (19%), Positives = 47/116 (40%), Gaps = 7/116 (6%)

Query: 274 VRVVKARELPAMDLTGSIDPFVEVKI-GNYKGITK-HYEKNQNPQWHQVFAFSRD----R 327
           + ++ A +L  ++L G +  +  V I  ++K  T    +   NP W++   F  D    +
Sbjct: 4   ITIISAEDLKNVNLFGKMKVYAVVWIDPSHKQSTPVDRDGGTNPTWNETLRFPLDERLLQ 63

Query: 328 MQASVLEVVIKDKDL-VKDDFVGIVRFDINEVPLRVPPDSPLAPEWYRLEDKKGEK 382
                L + +  +   + D  +G VR  + ++     P   L    Y+L    G+ 
Sbjct: 64  QGRLALTIEVYCERPSLGDKLIGEVRVPLKDLLDGASPAGELRFLSYQLRRPSGKP 119

SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 125

>gnl|CDD|176017 cd04052, C2B_Tricalbin-like, C2 domain second repeat present in Tricalbin-like proteins

 Score = 38.0 bits (89), Expect = 0.003
 Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 8/84 (9%)

Query: 280 REL-PAMDLTGSIDPFVEVKIGN---YKGITKHYEKNQNPQWHQVF-AFSRDRMQASVLE 334
           + L  +   TG + P+ E+ +     Y   T+  +K  NP W+        DR + S + 
Sbjct: 1   KGLDTSESKTGLLSPYAELYLNGKLVYT--TRVKKKTNNPSWNASTEFLVTDR-RKSRVT 57

Query: 335 VVIKDKDLVKDDFVGIVRFDINEV 358
           VV+KD     D  +G V   +N++
Sbjct: 58  VVVKDDRDRHDPVLGSVSISLNDL 81

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 111

>gnl|CDD|176006 cd04041, C2A_fungal, C2 domain first repeat; fungal group

 Score = 38.4 bits (90), Expect = 0.003
 Identities = 21/53 (39%), Positives = 27/53 (50%), Gaps = 4/53 (7%)

Query: 6  LGVQVVGAHNLLPKD-GKGSSSAFVELYF--DGQ-RFRTTIKENDLNPVWNES 54
          L V +  A +L   D G GSS  +V   F   G+  + T I   DLNPVW E+
Sbjct: 3  LVVTIHRATDLPKADFGTGSSDPYVTASFAKFGKPLYSTRIIRKDLNPVWEET 55

C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 111

>gnl|CDD|227371 COG5038, COG5038, Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]

 Score = 40.9 bits (96), Expect = 0.004
 Identities = 32/112 (28%), Positives = 51/112 (45%), Gaps = 11/112 (9%)

Query: 596  GILELGILNAVGLHPMKTRDGRGTSDTYCVAKYGHKWV-RTRTLVDNLSPKYNEQYTWEV 654
            G L + + +   L    + D  G SD +       K V +T+ +   L+P +NE++T EV
Sbjct: 1040 GYLTIMLRSGENL---PSSDENGYSDPFVKLFLNEKSVYKTKVVKKTLNPVWNEEFTIEV 1096

Query: 655  FDPAT-VLTVGVFDNSQLGEKSNGNKDLKIGKVRIRISTLETGRIYTHSYPL 705
             +    VLT+ V D        +G K+  +G   I +S LE G     + PL
Sbjct: 1097 LNRVKDVLTINVND------WDSGEKNDLLGTAEIDLSKLEPGGTTNSNIPL 1142

Length = 1227

>gnl|CDD|176033 cd08387, C2A_Synaptotagmin-8, C2A domain first repeat present in Synaptotagmin 8

 Score = 38.2 bits (89), Expect = 0.004
 Identities = 29/96 (30%), Positives = 53/96 (55%), Gaps = 8/96 (8%)

Query: 272 LYVRVVKARELPAMDLTGSIDPFVEVKI----GNYKGITKHYEKNQNPQWHQVFAF--SR 325
           L V++++AR L   D +G+ DP+ +V++     N K  +K ++K  NP++ + F F    
Sbjct: 18  LNVKLIQARNLQPRDFSGTADPYCKVRLLPDRSNTKQ-SKIHKKTLNPEFDESFVFEVPP 76

Query: 326 DRMQASVLEVVIKDKD-LVKDDFVGIVRFDINEVPL 360
             +    LEV++ D D   +D+ +G+V   + EV L
Sbjct: 77  QELPKRTLEVLLYDFDQFSRDECIGVVELPLAEVDL 112

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 124

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	1005
PF08372	156	PRT_C: Plant phosphoribosyltransferase C-terminal;	100.0
COG5038	1227	Ca2+-dependent lipid-binding protein, contains C2	100.0
KOG1326	1105	consensus Membrane-associated protein FER-1 and re	99.96
COG5038	1227	Ca2+-dependent lipid-binding protein, contains C2	99.94
KOG1028	421	consensus Ca2+-dependent phospholipid-binding prot	99.94
KOG1028	421	consensus Ca2+-dependent phospholipid-binding prot	99.93
KOG2059	800	consensus Ras GTPase-activating protein [Signal tr	99.88
cd08379	126	C2D_MCTP_PRT_plant C2 domain fourth repeat found i	99.87
KOG2059	800	consensus Ras GTPase-activating protein [Signal tr	99.87
cd04022	127	C2A_MCTP_PRT_plant C2 domain first repeat found in	99.86
cd04016	121	C2_Tollip C2 domain present in Toll-interacting pr	99.86
cd04019	150	C2C_MCTP_PRT_plant C2 domain third repeat found in	99.86
cd04016	121	C2_Tollip C2 domain present in Toll-interacting pr	99.84
KOG1030	168	consensus Predicted Ca2+-dependent phospholipid-bi	99.82
cd08682	126	C2_Rab11-FIP_classI C2 domain found in Rab11-famil	99.82
cd08682	126	C2_Rab11-FIP_classI C2 domain found in Rab11-famil	99.81
cd08379	126	C2D_MCTP_PRT_plant C2 domain fourth repeat found i	99.8
cd04015	158	C2_plant_PLD C2 domain present in plant phospholip	99.8
cd04042	121	C2A_MCTP_PRT C2 domain first repeat found in Multi	99.8
cd08378	121	C2B_MCTP_PRT_plant C2 domain second repeat found i	99.8
cd04019	150	C2C_MCTP_PRT_plant C2 domain third repeat found in	99.79
cd08401	121	C2A_RasA2_RasA3 C2 domain first repeat present in	99.79
cd08395	120	C2C_Munc13 C2 domain third repeat in Munc13 (mamma	99.78
cd08378	121	C2B_MCTP_PRT_plant C2 domain second repeat found i	99.77
cd08400	126	C2_Ras_p21A1 C2 domain present in RAS p21 protein	99.77
cd04042	121	C2A_MCTP_PRT C2 domain first repeat found in Multi	99.77
cd08401	121	C2A_RasA2_RasA3 C2 domain first repeat present in	99.77
cd08375	136	C2_Intersectin C2 domain present in Intersectin. A	99.77
KOG1030	168	consensus Predicted Ca2+-dependent phospholipid-bi	99.76
cd08681	118	C2_fungal_Inn1p-like C2 domain found in fungal Ing	99.76
cd08681	118	C2_fungal_Inn1p-like C2 domain found in fungal Ing	99.76
cd04010	148	C2B_RasA3 C2 domain second repeat present in RAS p	99.76
cd08678	126	C2_C21orf25-like C2 domain found in the Human chro	99.75
cd04027	127	C2B_Munc13 C2 domain second repeat in Munc13 (mamm	99.75
cd04046	126	C2_Calpain C2 domain present in Calpain proteins.	99.75
cd08377	119	C2C_MCTP_PRT C2 domain third repeat found in Multi	99.75
cd04033	133	C2_NEDD4_NEDD4L C2 domain present in the Human neu	99.75
cd08377	119	C2C_MCTP_PRT C2 domain third repeat found in Multi	99.75
cd04054	121	C2A_Rasal1_RasA4 C2 domain first repeat present in	99.75
PF04842	683	DUF639: Plant protein of unknown function (DUF639)	99.75
cd08376	116	C2B_MCTP_PRT C2 domain second repeat found in Mult	99.75
cd04022	127	C2A_MCTP_PRT_plant C2 domain first repeat found in	99.74
cd08381	122	C2B_PI3K_class_II C2 domain second repeat present	99.74
cd04024	128	C2A_Synaptotagmin-like C2 domain first repeat pres	99.74
cd08376	116	C2B_MCTP_PRT C2 domain second repeat found in Mult	99.74
cd08375	136	C2_Intersectin C2 domain present in Intersectin. A	99.74
cd04024	128	C2A_Synaptotagmin-like C2 domain first repeat pres	99.73
cd08678	126	C2_C21orf25-like C2 domain found in the Human chro	99.73
cd08382	123	C2_Smurf-like C2 domain present in Smad ubiquitina	99.73
cd08381	122	C2B_PI3K_class_II C2 domain second repeat present	99.73
cd08400	126	C2_Ras_p21A1 C2 domain present in RAS p21 protein	99.73
cd04050	105	C2B_Synaptotagmin-like C2 domain second repeat pre	99.73
cd04025	123	C2B_RasA1_RasA4 C2 domain second repeat present in	99.73
KOG1326	1105	consensus Membrane-associated protein FER-1 and re	99.72
cd04025	123	C2B_RasA1_RasA4 C2 domain second repeat present in	99.72
cd08677	118	C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a	99.72
cd04033	133	C2_NEDD4_NEDD4L C2 domain present in the Human neu	99.72
cd08677	118	C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a	99.72
cd04054	121	C2A_Rasal1_RasA4 C2 domain first repeat present in	99.72
cd08691	137	C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-li	99.72
cd08391	121	C2A_C2C_Synaptotagmin_like C2 domain first and thi	99.72
cd04036	119	C2_cPLA2 C2 domain present in cytosolic PhosphoLip	99.71
cd04029	125	C2A_SLP-4_5 C2 domain first repeat present in Syna	99.71
cd08391	121	C2A_C2C_Synaptotagmin_like C2 domain first and thi	99.71
cd04028	146	C2B_RIM1alpha C2 domain second repeat contained in	99.71
cd08392	128	C2A_SLP-3 C2 domain first repeat present in Synapt	99.71
cd08395	120	C2C_Munc13 C2 domain third repeat in Munc13 (mamma	99.71
cd08393	125	C2A_SLP-1_2 C2 domain first repeat present in Syna	99.71
cd04028	146	C2B_RIM1alpha C2 domain second repeat contained in	99.7
PF11696	642	DUF3292: Protein of unknown function (DUF3292); In	99.7
cd04017	135	C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferl	99.7
cd08680	124	C2_Kibra C2 domain found in Human protein Kibra. K	99.7
cd04046	126	C2_Calpain C2 domain present in Calpain proteins.	99.7
cd04014	132	C2_PKC_epsilon C2 domain in Protein Kinase C (PKC)	99.69
cd08685	119	C2_RGS-like C2 domain of the Regulator Of G-Protei	99.69
cd04029	125	C2A_SLP-4_5 C2 domain first repeat present in Syna	99.69
cd04039	108	C2_PSD C2 domain present in Phosphatidylserine dec	99.69
cd04044	124	C2A_Tricalbin-like C2 domain first repeat present	99.69
cd08394	127	C2A_Munc13 C2 domain first repeat in Munc13 (mamma	99.69
cd08388	128	C2A_Synaptotagmin-4-11 C2A domain first repeat pre	99.68
cd04027	127	C2B_Munc13 C2 domain second repeat in Munc13 (mamm	99.68
cd08394	127	C2A_Munc13 C2 domain first repeat in Munc13 (mamma	99.68
cd08393	125	C2A_SLP-1_2 C2 domain first repeat present in Syna	99.68
cd04014	132	C2_PKC_epsilon C2 domain in Protein Kinase C (PKC)	99.68
cd04031	125	C2A_RIM1alpha C2 domain first repeat contained in	99.68
cd04044	124	C2A_Tricalbin-like C2 domain first repeat present	99.67
cd04010	148	C2B_RasA3 C2 domain second repeat present in RAS p	99.67
cd08688	110	C2_KIAA0528-like C2 domain found in the Human KIAA	99.67
cd08392	128	C2A_SLP-3 C2 domain first repeat present in Synapt	99.67
cd08688	110	C2_KIAA0528-like C2 domain found in the Human KIAA	99.67
cd04013	146	C2_SynGAP_like C2 domain present in Ras GTPase act	99.67
cd04036	119	C2_cPLA2 C2 domain present in cytosolic PhosphoLip	99.67
cd08387	124	C2A_Synaptotagmin-8 C2A domain first repeat presen	99.66
cd04041	111	C2A_fungal C2 domain first repeat; fungal group. C	99.66
cd08387	124	C2A_Synaptotagmin-8 C2A domain first repeat presen	99.66
cd04015	158	C2_plant_PLD C2 domain present in plant phospholip	99.66
cd04020	162	C2B_SLP_1-2-3-4 C2 domain second repeat present in	99.66
cd04017	135	C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferl	99.66
cd04050	105	C2B_Synaptotagmin-like C2 domain second repeat pre	99.66
cd08389	124	C2A_Synaptotagmin-14_16 C2A domain first repeat pr	99.66
cd08373	127	C2A_Ferlin C2 domain first repeat in Ferlin. Ferli	99.66
cd08690	155	C2_Freud-1 C2 domain found in 5' repressor element	99.66
cd08385	124	C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repe	99.66
cd08386	125	C2A_Synaptotagmin-7 C2A domain first repeat presen	99.66
cd08382	123	C2_Smurf-like C2 domain present in Smad ubiquitina	99.65
cd04011	111	C2B_Ferlin C2 domain second repeat in Ferlin. Ferl	99.65
cd08373	127	C2A_Ferlin C2 domain first repeat in Ferlin. Ferli	99.65
cd04018	151	C2C_Ferlin C2 domain third repeat in Ferlin. Ferli	99.65
cd04041	111	C2A_fungal C2 domain first repeat; fungal group. C	99.65
cd04043	126	C2_Munc13_fungal C2 domain in Munc13 (mammalian un	99.65
cd04030	127	C2C_KIAA1228 C2 domain third repeat present in unc	99.65
cd08680	124	C2_Kibra C2 domain found in Human protein Kibra. K	99.64
cd04051	125	C2_SRC2_like C2 domain present in Soybean genes Re	99.64
cd08685	119	C2_RGS-like C2 domain of the Regulator Of G-Protei	99.63
cd04039	108	C2_PSD C2 domain present in Phosphatidylserine dec	99.63
cd08383	117	C2A_RasGAP C2 domain (first repeat) of Ras GTPase	99.63
cd08390	123	C2A_Synaptotagmin-15-17 C2A domain first repeat pr	99.62
cd04018	151	C2C_Ferlin C2 domain third repeat in Ferlin. Ferli	99.62
cd08385	124	C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repe	99.62
cd04032	127	C2_Perforin C2 domain of Perforin. Perforin contai	99.62
cd04049	124	C2_putative_Elicitor-responsive_gene C2 domain pre	99.62
cd08521	123	C2A_SLP C2 domain first repeat present in Synaptot	99.62
KOG1011	1283	consensus Neurotransmitter release regulator, UNC-	99.61
cd04038	145	C2_ArfGAP C2 domain present in Arf GTPase Activati	99.61
cd04049	124	C2_putative_Elicitor-responsive_gene C2 domain pre	99.61
cd04031	125	C2A_RIM1alpha C2 domain first repeat contained in	99.61
cd08676	153	C2A_Munc13-like C2 domain first repeat in Munc13 (	99.6
cd08388	128	C2A_Synaptotagmin-4-11 C2A domain first repeat pre	99.6
cd08406	136	C2B_Synaptotagmin-12 C2 domain second repeat prese	99.6
cd04011	111	C2B_Ferlin C2 domain second repeat in Ferlin. Ferl	99.6
cd04013	146	C2_SynGAP_like C2 domain present in Ras GTPase act	99.6
cd04030	127	C2C_KIAA1228 C2 domain third repeat present in unc	99.6
cd08407	138	C2B_Synaptotagmin-13 C2 domain second repeat prese	99.6
cd04021	125	C2_E3_ubiquitin_ligase C2 domain present in E3 ubi	99.6
cd04020	162	C2B_SLP_1-2-3-4 C2 domain second repeat present in	99.6
cd08406	136	C2B_Synaptotagmin-12 C2 domain second repeat prese	99.6
cd08690	155	C2_Freud-1 C2 domain found in 5' repressor element	99.6
cd08389	124	C2A_Synaptotagmin-14_16 C2A domain first repeat pr	99.6
cd08407	138	C2B_Synaptotagmin-13 C2 domain second repeat prese	99.6
cd04051	125	C2_SRC2_like C2 domain present in Soybean genes Re	99.6
cd04038	145	C2_ArfGAP C2 domain present in Arf GTPase Activati	99.6
cd08675	137	C2B_RasGAP C2 domain second repeat of Ras GTPase a	99.59
PLN03008	868	Phospholipase D delta	99.59
cd04045	120	C2C_Tricalbin-like C2 domain third repeat present	99.59
cd04043	126	C2_Munc13_fungal C2 domain in Munc13 (mammalian un	99.59
cd08386	125	C2A_Synaptotagmin-7 C2A domain first repeat presen	99.58
cd08692	135	C2B_Tac2-N C2 domain second repeat found in Tac2-N	99.58
cd04040	115	C2D_Tricalbin-like C2 domain fourth repeat present	99.58
cd08383	117	C2A_RasGAP C2 domain (first repeat) of Ras GTPase	99.58
cd08521	123	C2A_SLP C2 domain first repeat present in Synaptot	99.57
cd04040	115	C2D_Tricalbin-like C2 domain fourth repeat present	99.57
cd04045	120	C2C_Tricalbin-like C2 domain third repeat present	99.57
cd08676	153	C2A_Munc13-like C2 domain first repeat in Munc13 (	99.56
cd08404	136	C2B_Synaptotagmin-4 C2 domain second repeat presen	99.55
cd08384	133	C2B_Rabphilin_Doc2 C2 domain second repeat present	99.55
cd08390	123	C2A_Synaptotagmin-15-17 C2A domain first repeat pr	99.55
cd04032	127	C2_Perforin C2 domain of Perforin. Perforin contai	99.55
cd04009	133	C2B_Munc13-like C2 domain second repeat in Munc13	99.54
cd04052	111	C2B_Tricalbin-like C2 domain second repeat present	99.54
cd08402	136	C2B_Synaptotagmin-1 C2 domain second repeat presen	99.53
cd08675	137	C2B_RasGAP C2 domain second repeat of Ras GTPase a	99.53
cd08691	137	C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-li	99.53
cd08410	135	C2B_Synaptotagmin-17 C2 domain second repeat prese	99.53
KOG0696	683	consensus Serine/threonine protein kinase [Signal	99.53
cd08686	118	C2_ABR C2 domain in the Active BCR (Breakpoint clu	99.53
cd08692	135	C2B_Tac2-N C2 domain second repeat found in Tac2-N	99.52
cd04026	131	C2_PKC_alpha_gamma C2 domain in Protein Kinase C (	99.52
cd04021	125	C2_E3_ubiquitin_ligase C2 domain present in E3 ubi	99.52
cd08408	138	C2B_Synaptotagmin-14_16 C2 domain second repeat pr	99.52
cd04037	124	C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferli	99.52
KOG0696	683	consensus Serine/threonine protein kinase [Signal	99.52
cd08405	136	C2B_Synaptotagmin-7 C2 domain second repeat presen	99.51
cd04026	131	C2_PKC_alpha_gamma C2 domain in Protein Kinase C (	99.51
cd00275	128	C2_PLC_like C2 domain present in Phosphoinositide-	99.51
cd04037	124	C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferli	99.51
cd08384	133	C2B_Rabphilin_Doc2 C2 domain second repeat present	99.51
cd04009	133	C2B_Munc13-like C2 domain second repeat in Munc13	99.5
cd08403	134	C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repe	99.5
cd08402	136	C2B_Synaptotagmin-1 C2 domain second repeat presen	99.5
cd08404	136	C2B_Synaptotagmin-4 C2 domain second repeat presen	99.5
cd04035	123	C2A_Rabphilin_Doc2 C2 domain first repeat present	99.49
cd08410	135	C2B_Synaptotagmin-17 C2 domain second repeat prese	99.49
cd08409	137	C2B_Synaptotagmin-15 C2 domain second repeat prese	99.49
cd08405	136	C2B_Synaptotagmin-7 C2 domain second repeat presen	99.49
cd08409	137	C2B_Synaptotagmin-15 C2 domain second repeat prese	99.49
cd00276	134	C2B_Synaptotagmin C2 domain second repeat present	99.48
KOG1013	362	consensus Synaptic vesicle protein rabphilin-3A [I	99.48
cd04052	111	C2B_Tricalbin-like C2 domain second repeat present	99.48
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	99.48
cd08686	118	C2_ABR C2 domain in the Active BCR (Breakpoint clu	99.48
KOG1013	362	consensus Synaptic vesicle protein rabphilin-3A [I	99.47
cd00276	134	C2B_Synaptotagmin C2 domain second repeat present	99.47
cd04048	120	C2A_Copine C2 domain first repeat in Copine. There	99.47
cd08403	134	C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repe	99.47
cd08408	138	C2B_Synaptotagmin-14_16 C2 domain second repeat pr	99.46
cd04048	120	C2A_Copine C2 domain first repeat in Copine. There	99.46
cd00275	128	C2_PLC_like C2 domain present in Phosphoinositide-	99.43
cd04035	123	C2A_Rabphilin_Doc2 C2 domain first repeat present	99.41
PLN03008	868	Phospholipase D delta	99.41
cd04047	110	C2B_Copine C2 domain second repeat in Copine. Ther	99.34
cd04047	110	C2B_Copine C2 domain second repeat in Copine. Ther	99.31
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	99.3
PF00168	85	C2: C2 domain; InterPro: IPR000008 The C2 domain i	99.3
KOG1328	1103	consensus Synaptic vesicle protein BAIAP3, involve	99.26
KOG1011	1283	consensus Neurotransmitter release regulator, UNC-	99.25
PF00168	85	C2: C2 domain; InterPro: IPR000008 The C2 domain i	99.24
PF06398	359	Pex24p: Integral peroxisomal membrane peroxin; Int	99.24
PLN02270	808	phospholipase D alpha	99.23
cd08374	133	C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferli	99.2
cd00030	102	C2 C2 domain. The C2 domain was first identified i	99.11
cd00030	102	C2 C2 domain. The C2 domain was first identified i	99.09
PLN02223	537	phosphoinositide phospholipase C	99.08
PLN02223	537	phosphoinositide phospholipase C	99.05
smart00239	101	C2 Protein kinase C conserved region 2 (CalB). Ca2	99.05
cd08374	133	C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferli	99.01
PLN02952	599	phosphoinositide phospholipase C	98.98
smart00239	101	C2 Protein kinase C conserved region 2 (CalB). Ca2	98.98
KOG1031	1169	consensus Predicted Ca2+-dependent phospholipid-bi	98.97
cd08689	109	C2_fungal_Pkc1p C2 domain found in protein kinase	98.95
PLN02952	599	phosphoinositide phospholipase C	98.93
KOG1031	1169	consensus Predicted Ca2+-dependent phospholipid-bi	98.91
PLN02230	598	phosphoinositide phospholipase C 4	98.89
PLN02228	567	Phosphoinositide phospholipase C	98.89
cd08689	109	C2_fungal_Pkc1p C2 domain found in protein kinase	98.88
PLN02270	808	phospholipase D alpha	98.87
PLN02230	598	phosphoinositide phospholipase C 4	98.86
PLN02222	581	phosphoinositide phospholipase C 2	98.86
KOG0169	746	consensus Phosphoinositide-specific phospholipase	98.85
KOG1328	1103	consensus Synaptic vesicle protein BAIAP3, involve	98.84
PLN02222	581	phosphoinositide phospholipase C 2	98.79
KOG0169	746	consensus Phosphoinositide-specific phospholipase	98.78
PLN02228	567	Phosphoinositide phospholipase C	98.77
KOG1264	1267	consensus Phospholipase C [Lipid transport and met	98.68
KOG1264	1267	consensus Phospholipase C [Lipid transport and met	98.67
KOG1327	529	consensus Copine [Signal transduction mechanisms]	98.53
PLN02352	758	phospholipase D epsilon	98.52
KOG1327	529	consensus Copine [Signal transduction mechanisms]	98.41
cd08683	143	C2_C2cd3 C2 domain found in C2 calcium-dependent d	98.28
PLN02352	758	phospholipase D epsilon	98.23
KOG0905	1639	consensus Phosphoinositide 3-kinase [Signal transd	98.18
KOG0905	1639	consensus Phosphoinositide 3-kinase [Signal transd	98.18
PF12416	340	DUF3668: Cep120 protein; InterPro: IPR022136 This	98.14
cd08683	143	C2_C2cd3 C2 domain found in C2 calcium-dependent d	97.99
PF12416	340	DUF3668: Cep120 protein; InterPro: IPR022136 This	97.87
KOG3837	523	consensus Uncharacterized conserved protein, conta	97.64
cd08684	103	C2A_Tac2-N C2 domain first repeat found in Tac2-N	97.53
PLN02964	644	phosphatidylserine decarboxylase	97.47
cd08684	103	C2A_Tac2-N C2 domain first repeat found in Tac2-N	97.47
KOG2060	405	consensus Rab3 effector RIM1 and related proteins,	97.35
PLN02964	644	phosphatidylserine decarboxylase	97.28
KOG2060	405	consensus Rab3 effector RIM1 and related proteins,	97.06
KOG3837	523	consensus Uncharacterized conserved protein, conta	96.45
KOG1265	1189	consensus Phospholipase C [Lipid transport and met	96.31
cd08398	158	C2_PI3K_class_I_alpha C2 domain present in class I	95.97
PF15627	156	CEP76-C2: CEP76 C2 domain	95.77
cd08693	173	C2_PI3K_class_I_beta_delta C2 domain present in cl	95.59
PF08372	156	PRT_C: Plant phosphoribosyltransferase C-terminal;	95.24
KOG1265	1189	consensus Phospholipase C [Lipid transport and met	95.2
KOG1452	442	consensus Predicted Rho GTPase-activating protein	95.13
PF15627	156	CEP76-C2: CEP76 C2 domain	95.0
cd08380	156	C2_PI3K_like C2 domain present in phosphatidylinos	94.7
PF10358	143	NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins;	94.32
cd08693	173	C2_PI3K_class_I_beta_delta C2 domain present in cl	94.25
cd08398	158	C2_PI3K_class_I_alpha C2 domain present in class I	93.8
cd08687	98	C2_PKN-like C2 domain in Protein kinase C-like (PK	93.7
PF10358	143	NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins;	93.57
cd08399	178	C2_PI3K_class_I_gamma C2 domain present in class I	93.25
PF02453	169	Reticulon: Reticulon; InterPro: IPR003388 Eukaryot	93.23
cd08380	156	C2_PI3K_like C2 domain present in phosphatidylinos	92.98
cd08397	159	C2_PI3K_class_III C2 domain present in class III p	92.93
KOG1452	442	consensus Predicted Rho GTPase-activating protein	92.69
cd04012	171	C2A_PI3K_class_II C2 domain first repeat present i	92.63
cd08397	159	C2_PI3K_class_III C2 domain present in class III p	92.03
cd04012	171	C2A_PI3K_class_II C2 domain first repeat present i	91.35
cd08399	178	C2_PI3K_class_I_gamma C2 domain present in class I	90.13
cd08695	189	C2_Dock-B C2 domains found in Dedicator Of CytoKin	89.99
smart00142	100	PI3K_C2 Phosphoinositide 3-kinase, region postulat	89.09
cd08694	196	C2_Dock-A C2 domains found in Dedicator Of CytoKin	86.99
PF00792	142	PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: I	85.57
smart00142	100	PI3K_C2 Phosphoinositide 3-kinase, region postulat	84.5
cd08687	98	C2_PKN-like C2 domain in Protein kinase C-like (PK	83.09
PF14429	184	DOCK-C2: C2 domain in Dock180 and Zizimin proteins	82.43
PF00792	142	PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: I	81.93
PF11618	107	DUF3250: Protein of unknown function (DUF3250); In	80.59
cd08694	196	C2_Dock-A C2 domains found in Dedicator Of CytoKin	80.53
PF14429	184	DOCK-C2: C2 domain in Dock180 and Zizimin proteins	80.37
KOG1329	887	consensus Phospholipase D1 [Lipid transport and me	80.33

>PF08372 PRT_C: Plant phosphoribosyltransferase C-terminal; InterPro: IPR013583 This domain is found at the C terminus of phosphoribosyltransferases and phosphoribosyltransferase-like proteins

Probab=100.00  E-value=3.9e-41  Score=313.48  Aligned_cols=156  Identities=72%  Similarity=1.329  Sum_probs=153.1

Q ss_pred             HHHHHHHHHHHhhhccccCCCCCCCCCcccccccCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHhhhhhHHHHHHHHHh
Q 045058          850 LPTVFLYMFLIGIWNYRYRPRYPPHMNIKISQAEAVHPDELDEEFDTFPTSRSPELVRMRYDRLRSVAGRIQTVVGDVAT  929 (1005)
Q Consensus       850 ~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~vQ~~l~~~a~  929 (1005)
                      +|+++++++++++|||+++|+.|+|+|.++|+.+++++||+|||+|..|++++++.+++||+++|+++++|||.+|++|+
T Consensus         1 lp~~~l~~~~~~~w~yr~rpr~p~~~d~~ls~~~~~~~deldEEfD~~ps~~~~~~lr~Rydrlr~va~rvQ~vlgd~At   80 (156)
T PF08372_consen    1 LPTVFLYLFLIGLWNYRFRPRHPPHMDTKLSHADSAHPDELDEEFDTFPSSRPPDSLRMRYDRLRSVAGRVQNVLGDVAT   80 (156)
T ss_pred             CchHHHHHHHHHHhccccCCCCCCCCCccccccccCCcchhhhhhcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            58899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCccCCCCCCchhhhhhcCCCCcCCCC
Q 045058          930 QGERLQALISWRDPRATAIFITFCLVAALVLFLTPFQVIAALAGFWVMRHPRFRRRLPSVPINFFRRLPARTDSML 1005 (1005)
Q Consensus       930 ~~e~~~~l~~w~~p~~t~~~~~~~~~~~~v~~~iP~r~i~l~~g~~~~~~P~f~~~~~~~~~~~~~r~p~~~~~~~ 1005 (1005)
                      ++||++|+|+|+||.+|++++++|+++++++|++|+|+++++||+|++|||+||.++|+.++|||+||||++|+||
T Consensus        81 ~gERl~allsWrdP~aT~lf~~~clv~avvly~vP~r~l~l~~gly~~r~P~~R~~~P~~~~nff~RlPs~~d~~l  156 (156)
T PF08372_consen   81 QGERLQALLSWRDPRATALFVVFCLVAAVVLYFVPFRVLVLIWGLYKLRHPRFRNPLPSPPLNFFRRLPSRSDSML  156 (156)
T ss_pred             HHHHHHHhhccCCccHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCccccCCCCcHHHHHHHHCCCchhhcC
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999987

It contains putative transmembrane regions. It often appears together with calcium-ion dependent C2 domains (IPR000008 from INTERPRO).

>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]

Probab=100.00  E-value=1.8e-35  Score=342.23  Aligned_cols=552  Identities=22%  Similarity=0.271  Sum_probs=390.0

Q ss_pred             cEEEEEEEEeecCCCCC--CCCCCCcEEEEEECCe-EeeccccCCCCCCceeeEEEEEeccCccccceEEEEEEEeCCCC
Q 045058            4 LKLGVQVVGAHNLLPKD--GKGSSSAFVELYFDGQ-RFRTTIKENDLNPVWNESFYFNISDASKLHYLTLEAYIYNNIGD   80 (1005)
Q Consensus         4 ~~l~V~v~~a~~L~~~d--~~g~~dpyv~v~~~~~-~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~~   80 (1005)
                      |.|.|+|.+|++|...+  .++..|||+++.+.+. ..||+++++++||+|||+|.+.+...+    ..|.++|||.+ .
T Consensus       436 GVv~vkI~sa~~lk~~d~~i~~~vDpyit~~~~~r~~gkT~v~~nt~nPvwNEt~Yi~lns~~----d~L~LslyD~n-~  510 (1227)
T COG5038         436 GVVEVKIKSAEGLKKSDSTINGTVDPYITVTFSDRVIGKTRVKKNTLNPVWNETFYILLNSFT----DPLNLSLYDFN-S  510 (1227)
T ss_pred             EEEEEEEeeccCcccccccccCCCCceEEEEeccccCCccceeeccCCccccceEEEEecccC----CceeEEEEecc-c
Confidence            78999999999999887  5789999999998765 689999999999999999999997655    48999999984 4


Q ss_pred             CCCCcccEEEEEeCCcccCCCCceeeeEecccCCCcceeeeEEEEEEEEecCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 045058           81 TNSRSFLGKVCLTGNSFVPLSDSVVLHYPLEKRGIFSHVRGELGLKVYITDDPSIKSSTPLPAAETFSTKDPSITHTHAQ  160 (1005)
Q Consensus        81 ~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (1005)
                      ...|+.+|.+.++|+.|...+.....-+.+....   +..|++...+.|.+-......                      
T Consensus       511 ~~sd~vvG~~~l~L~~L~~~~~~~ne~~e~~~~~---k~vGrL~yDl~ffp~~e~k~~----------------------  565 (1227)
T COG5038         511 FKSDKVVGSTQLDLALLHQNPVKKNELYEFLRNT---KNVGRLTYDLRFFPVIEDKKE----------------------  565 (1227)
T ss_pred             cCCcceeeeEEechHHhhhccccccceeeeeccC---ccceEEEEeeeeecccCCccc----------------------
Confidence            5699999999999999987765444345443322   457999999988871110000                      


Q ss_pred             CCCCCCCCCcccccccccCCCCCCCCCCCCCCCCCcccccCCCCccccccccCCCCCCcceeecccCCCCCCCCcccccC
Q 045058          161 PVANPVTGDTVESRHTFHHLPNPNHHQHHHQHHPSTTVVNRHVPKYEADEMKSEPQPPKLVHMYSAASSQSADYALKETS  240 (1005)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (1005)
                                        ..+                                                      ..|..
T Consensus       566 ------------------~~~------------------------------------------------------s~e~~  573 (1227)
T COG5038         566 ------------------LKG------------------------------------------------------SVEPL  573 (1227)
T ss_pred             ------------------ccc------------------------------------------------------ccCCc
Confidence                              000                                                      00000


Q ss_pred             CCCCCCcccCceeeccccceeeeccccceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECCee-eeeeeecCCCCCeeee
Q 045058          241 PYLGGGKVVGGRVIHADKTASTYDLVERMYFLYVRVVKARELPAMDLTGSIDPFVEVKIGNYK-GITKHYEKNQNPQWHQ  319 (1005)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~~~~-~kT~~~~~~~nP~wne  319 (1005)
                      +                        +...|++.+++.++++|.... .....-++++++.++. +.|++++.+.+|.||+
T Consensus       574 e------------------------d~n~GI~k~tl~~~~~l~~~~-~~~~~~~a~l~~~~keV~st~~~k~t~~~~wn~  628 (1227)
T COG5038         574 E------------------------DSNTGILKVTLREVKALDELS-SKKDNKSAELYTNAKEVYSTGKLKFTNHPSWNL  628 (1227)
T ss_pred             c------------------------cCCcceeEEEeeccccccCcc-ccccceeEEEEecceEEeccceeeeccCCceee
Confidence            0                        011378999999999997543 1222334889988865 5668899999999999


Q ss_pred             EEEEeecCCCCcEEEEEEEeCCCCCCceeEEEEEEceecCCCCCCCCCCCCeEEEeecCCCCccceEEEEEEEEeccCCc
Q 045058          320 VFAFSRDRMQASVLEVVIKDKDLVKDDFVGIVRFDINEVPLRVPPDSPLAPEWYRLEDKKGEKIKGELMLAVWIGTQADE  399 (1005)
Q Consensus       320 ~f~f~~~~~~~~~l~v~V~d~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~G~i~l~~~~~~~~d~  399 (1005)
                      .+...+.+.....+.+.++|..  ..+.+|+...+|.++...    ......||++..+     +|+|.++.++.|....
T Consensus       629 ~~~~~v~~~~ns~~~~~~~d~~--~g~~i~~~~~~l~~li~~----t~dt~~~f~~~~~-----kg~I~~t~~W~Pi~~~  697 (1227)
T COG5038         629 QYNVLVTDRKNSSIKVVTFDVQ--SGKVIATEGSTLPDLIDR----TLDTFLVFPLRNP-----KGRIFITNYWKPIYNA  697 (1227)
T ss_pred             ecceEeccCcceeEEEEecccc--cCceeccccccchHhhhc----cccceEEEEcCCC-----cceEEEEeccceeecc
Confidence            9999999888888999999875  567888888888888764    2345678988843     3889999876653211


Q ss_pred             ccccccCCCCCCCCCCCCccccccccccccCCceEEEEEEEEEeeeCCCCCCCCCCCcEEEEEECC-eEEeeecccCCCC
Q 045058          400 AFSDAWHSDAATPVDSTPAITAVIRSKVYHSPRLWYVRVNVVEAQDLVPTEKNHFPDVYVKAQIGN-QVLKTKICQARTL  478 (1005)
Q Consensus       400 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~lg~-~~~kT~~~~~~t~  478 (1005)
                      .                     ...+..+.....|.++|.|..|.+|.....++.+|||+++.+++ .++||-... .+.
T Consensus       698 ~---------------------~~~s~~~~~~pIg~irv~v~~andl~n~i~g~~~dPya~v~~n~~~k~rti~~~-~~~  755 (1227)
T COG5038         698 G---------------------GSSSKTVYDTPIGAIRVSVRKANDLRNEIPGGKSDPYATVLVNNLVKYRTIYGS-STL  755 (1227)
T ss_pred             c---------------------cccceeeecCccceEEEEeehhhcccccccCcccccceEEEecceeEEEEeccc-Ccc
Confidence            0                     01122335667889999999999999888899999999999966 677887775 899


Q ss_pred             CcccccEEEEEeeCCCCCeEEEEEEeccCCCCCceeEEEEEcccccccccccc---------cccc--------------
Q 045058          479 SAVWNEDLLFVAAEPFEDHLVLTVEDRVGPGKDEIIGRVIIPLSAIEKRADER---------IIHS--------------  535 (1005)
Q Consensus       479 ~P~w~e~f~f~v~~~~~~~l~i~V~d~d~~~~d~~iG~~~i~l~~l~~~~~~~---------~~~~--------------  535 (1005)
                      ||.|++....++..+. +.+.+.++|....+.|..+|++.++++++..+.++.         ....              
T Consensus       756 npiw~~i~Yv~v~sk~-~r~~l~~~~~~~sgddr~lg~~~i~vsn~~~k~~~s~~~~~i~g~~~t~~l~~~~~~~~~tit  834 (1227)
T COG5038         756 NPIWNEILYVPVTSKN-QRLTLECMDYEESGDDRNLGEVNINVSNVSKKDEDSALMETIDGAEETGKLSLTGKKVKGTIT  834 (1227)
T ss_pred             ccceeeeEEEEecCCc-cEEeeeeecchhccccceeceeeeeeeeeeecCCCcceEEeecCcccccccccccCCcceeEE
Confidence            9999999999988764 459999999999999999999999999987632211         0000              


Q ss_pred             ---eeEEccCCCcc----cc----cc----------ccc-------------------cccc------------------
Q 045058          536 ---RWFNLEKPVAV----DV----DQ----------LKK-------------------EKFS------------------  557 (1005)
Q Consensus       536 ---~w~~L~~~~~~----~~----~~----------~~~-------------------~~~~------------------  557 (1005)
                         +.|+.......    ..    .+          ..+                   ....                  
T Consensus       835 ~~~~f~p~~i~~s~ee~~~~~k~~~e~~~~~~~~~~l~ek~~~~~D~~~~~~e~~~v~~~~d~~~~k~k~~lne~lq~~s  914 (1227)
T COG5038         835 YKCRFYPAVIVLSLEEVRYVDKVSSEKRKSEKRKSALDEKTISLVDKEDSVEESIEVEELTDMYSLKPKLDLNEALQYKS  914 (1227)
T ss_pred             EEEEEEeecccCChHHhcchhhhhhHHHHhhhhhcccCccccchhccccchhcceeeccccchhhcchhhhhhhhhcccC
Confidence               01111000000    00    00          000                   0000                  


Q ss_pred             c--------------ceeEEEeecC-CccccCCCc-------------------ccc------------CC---------
Q 045058          558 S--------------RIHLRVCLDG-GYHVLDEST-------------------HYS------------SD---------  582 (1005)
Q Consensus       558 ~--------------~i~l~~~l~~-~~~~~~~~~-------------------~~~------------~d---------  582 (1005)
                      |              .+++.+.++. +|+....+.                   .|+            .|         
T Consensus       915 gv~~i~i~~g~l~~~~~~l~~f~Dd~~~~~i~s~~~~t~~~~~~~~g~~~ireL~~s~~tfrv~K~a~~~dk~v~e~t~~  994 (1227)
T COG5038         915 GVLGIQILSGELPDPGQYLQIFFDDASHPQIVSSKAPTRGERNGESGDTFIRELEYSETTFRVTKNAKKSDKVVCEVTLP  994 (1227)
T ss_pred             CceEEEEEEeecCCcceEEEEEecCCCCceeeccCCcccccccchhhhhhhhhhccceEEEEeccCCcccCceeeecccc
Confidence            0              1122222322 221111000                   000            00         


Q ss_pred             ---C------cccc-------cc----cC------------CCcceEEEEEEEEecCCCCCCCCCCCCCCCcEEEEEECC
Q 045058          583 ---L------RPTA-------KQ----LW------------RPSIGILELGILNAVGLHPMKTRDGRGTSDTYCVAKYGH  630 (1005)
Q Consensus       583 ---~------~~~~-------~~----~~------------~~~~g~l~v~i~~a~~L~~~~~~~~~~~~dpyv~~~~g~  630 (1005)
                         +      +|..       +.    .|            ..+.|.|.|.+..|.||+.   +|.+|.+||||++.+++
T Consensus       995 t~~lvs~~~~kp~~ln~~g~~~~~v~~~~tPv~~~l~~~emv~nsG~l~I~~~~~~nl~~---~d~ng~sDpfv~~~ln~ 1071 (1227)
T COG5038         995 TLDLVSNAYEKPSSLNFPGSAKVLVQVSYTPVPVKLPPVEMVENSGYLTIMLRSGENLPS---SDENGYSDPFVKLFLNE 1071 (1227)
T ss_pred             hhHHHHHhhCCCcEEecCCCceEEEEEEEeecccccCcceeecccCcEEEEEeccCCCcc---cccCCCCCceEEEEecc
Confidence               0      0000       00    00            1347999999999999995   56799999999999987


Q ss_pred             E-EEEeeeccCCCCceeccEEEEEEeC-CCceEEEEEEeCCCcCCCCCCCCCcccEEEEEEcccccCCCEEeeeEeeeec
Q 045058          631 K-WVRTRTLVDNLSPKYNEQYTWEVFD-PATVLTVGVFDNSQLGEKSNGNKDLKIGKVRIRISTLETGRIYTHSYPLLVL  708 (1005)
Q Consensus       631 ~-~~~T~~~~~t~nP~wne~f~~~v~~-~~~~l~i~v~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~  708 (1005)
                      + .++|+++++|+||+|||+|+++|.. ..+.++|.|+|||.      +.+++.||.+.|+|+.|..+..+....+|..+
T Consensus      1072 k~vyktkv~KktlNPvwNEe~~i~v~~r~~D~~~i~v~Dwd~------~~knd~lg~~~idL~~l~~~~~~n~~i~ldgk 1145 (1227)
T COG5038        1072 KSVYKTKVVKKTLNPVWNEEFTIEVLNRVKDVLTINVNDWDS------GEKNDLLGTAEIDLSKLEPGGTTNSNIPLDGK 1145 (1227)
T ss_pred             eecccccchhccCCCCccccceEeeeccccceEEEEEeeccc------CCCccccccccccHhhcCcCCccceeeeccCc
Confidence            7 6899999999999999999999985 58899999999995      44999999999999999999988777887533


Q ss_pred             CCCCCceeeEEEEEEEEee
Q 045058          709 HPTGVKKMGELHLAIRFSC  727 (1005)
Q Consensus       709 ~~~~~~~~G~i~l~~~~~~  727 (1005)
                      . . ....|.++....|..
T Consensus      1146 ~-~-~~~~g~~~~~~~~r~ 1162 (1227)
T COG5038        1146 T-F-IVLDGTLHPGFNFRS 1162 (1227)
T ss_pred             c-e-EecccEeecceecch
Confidence            3 1 123467766666543

>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]

Probab=99.96  E-value=2.8e-28  Score=277.06  Aligned_cols=592  Identities=18%  Similarity=0.225  Sum_probs=354.8

Q ss_pred             EEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEeeccccCCCCCCceeeEEEEEe---ccCcc---ccceEEEEEEEeCC
Q 045058            5 KLGVQVVGAHNLLPKDGKGSSSAFVELYFDGQRFRTTIKENDLNPVWNESFYFNI---SDASK---LHYLTLEAYIYNNI   78 (1005)
Q Consensus         5 ~l~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~T~v~~~t~nP~Wne~f~f~v---~~~~~---~~~~~l~v~V~d~~   78 (1005)
                      .+++.|.+|+.|...|..+.+|||+.|.+.++.+.|-++.+|+||.||++..|.-   ...-.   .+...+.|+|||.+
T Consensus       207 ~lR~yiyQar~L~a~dk~~~sdp~a~v~f~~qs~~T~~v~~tl~ptwdq~~~f~~~ei~ge~~~~~~~ppi~v~e~yd~d  286 (1105)
T KOG1326|consen  207 PLRSYIYQARALGAPDKDDESDPDAAVEFCGQSKETEVVPGTLNPTWDQTIIFDEVEIYGEAHLVLKNPPIRVFEVYDLD  286 (1105)
T ss_pred             hhHHHHHHHHhhcCCCcccCCCchhhhhcccccceeEeecCcCCCCccceeeccceeecCccchhhcCCCeEEEEeehhh
Confidence            4567788999999999999999999999999999999999999999999999872   21111   12346889999996


Q ss_pred             CCCCCCcccEEEEEeCCcccCCCCceeeeEecccCCCcceeeeEEEEEEEEecCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 045058           79 GDTNSRSFLGKVCLTGNSFVPLSDSVVLHYPLEKRGIFSHVRGELGLKVYITDDPSIKSSTPLPAAETFSTKDPSITHTH  158 (1005)
Q Consensus        79 ~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (1005)
                      +. +.++|+|++.....-...-+.  ..|+++...+   ..+|++.++..++....     +.+-               
T Consensus       287 r~-g~~ef~gr~~~~p~V~~~~p~--lkw~p~~rg~---~l~gd~l~a~eliq~~~-----~i~~---------------  340 (1105)
T KOG1326|consen  287 RS-GINEFKGRKKQRPYVMVQCPA--LKWVPTMRGA---FLDGDVLIAAELIQIGK-----PIPQ---------------  340 (1105)
T ss_pred             hh-chHHhhcccccceEEEecCCc--cceEEeeccc---ccccchhHHHHHHhhcC-----CCCC---------------
Confidence            54 589999998776443333222  2589887654   34566666554333111     0000               


Q ss_pred             CCCCCCCCCCCcccccccccCCCCCCCCCCCCCCCCCcccccCCCCccccccccCCCCCCcceeecccCCCCCCCCcccc
Q 045058          159 AQPVANPVTGDTVESRHTFHHLPNPNHHQHHHQHHPSTTVVNRHVPKYEADEMKSEPQPPKLVHMYSAASSQSADYALKE  238 (1005)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (1005)
                                                       +.                +.+     +...++.           ..-
T Consensus       341 ---------------------------------p~----------------~~~-----~~~~~~v-----------p~~  355 (1105)
T KOG1326|consen  341 ---------------------------------PP----------------PQR-----EIIFSLV-----------PKK  355 (1105)
T ss_pred             ---------------------------------CC----------------ccc-----ccceecc-----------ccC
Confidence                                             00                000     0000000           000


Q ss_pred             cCCCCCCCcccCceeeccccceeeeccccceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeeecC-CCCCee
Q 045058          239 TSPYLGGGKVVGGRVIHADKTASTYDLVERMYFLYVRVVKARELPAMDLTGSIDPFVEVKIGNYKGITKHYEK-NQNPQW  317 (1005)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~~~~~kT~~~~~-~~nP~w  317 (1005)
                      ++|                        ..+.+.+.|-...-+|+..........|-+.+.++++..++..+.+ ..||.+
T Consensus       356 iRp------------------------~~q~~~~evl~wgLrn~k~~~m~~~~~P~~~~e~g~e~v~s~~I~~~k~npnf  411 (1105)
T KOG1326|consen  356 IRP------------------------KTQIGKAELLMWGLRNPKKSGMASTFSPALLVEFGGERVSSFSIFNRKKNPNF  411 (1105)
T ss_pred             CCc------------------------ceeeeeeehhhhhhcccccccccccCCcceeEeeCCceEeeeeehhhhhCCCC
Confidence            111                        1123555666666677777777777889999999999988877765 678888


Q ss_pred             eeEEEEee-----cCCCCcEEEEEEEeCC-CCCCceeEEEEEE-ceecCCCCCCCCC-----------------------
Q 045058          318 HQVFAFSR-----DRMQASVLEVVIKDKD-LVKDDFVGIVRFD-INEVPLRVPPDSP-----------------------  367 (1005)
Q Consensus       318 ne~f~f~~-----~~~~~~~l~v~V~d~~-~~~d~~lG~~~i~-l~~l~~~~~~~~~-----------------------  367 (1005)
                      +..+.+-.     .+.....+.++|.|.+ +++-..+|.|.+. +.....+......                       
T Consensus       412 ~s~~~~~~v~lpd~e~Y~ppl~akvvd~~~fg~~~v~g~c~i~~l~nf~c~p~~~~~~~Pq~~~d~~~~~~~~~~~~~~~  491 (1105)
T KOG1326|consen  412 PSRVLGRLVILPDEELYMPPLNAKVVDLRQFGRMEVVGQCKILSLYNFFCDPSAVNSITPQFASDPVSIMMGSTDNEIRH  491 (1105)
T ss_pred             ceeEEEEEEeccchHhhCccceeEEEecccccceeehhhhcchhhhhhccCchhhcccCcCCCCCchhhhcCCchhhhhh
Confidence            87666642     2334578999999998 8899999999985 5444432110000                       


Q ss_pred             -----------------CCCeEEEeecCCCCc-------cceEEEEEEEEeccCCc---ccc--cccCCC---------C
Q 045058          368 -----------------LAPEWYRLEDKKGEK-------IKGELMLAVWIGTQADE---AFS--DAWHSD---------A  409 (1005)
Q Consensus       368 -----------------~~~~w~~L~~~~~~~-------~~G~i~l~~~~~~~~d~---~~~--~~~~~~---------~  409 (1005)
                                       ...-|-++....+..       .++..++.++...  .+   +|.  ..|...         .
T Consensus       492 ~~~~~l~~~~~~~~~e~~~~~w~k~~~~~~~~~k~~~~~~K~~~~LKiyn~e--le~v~ef~~l~D~~~~f~l~rG~~~~  569 (1105)
T KOG1326|consen  492 CNSSTLPASPHEDEEEREVDWWGKFYPSAEENAKWEVYEHKINVTLKIYNME--LEMVAEFRGLQDWAVTFKLYRGKEGL  569 (1105)
T ss_pred             ccccCCCCCccccccceehhhhhhccccccccccccccccccceEEEEehhh--hhhHHHHhhhhhccceeEeeeccccC
Confidence                             001121121111111       1122333332211  11   000  000000         0


Q ss_pred             CC----------------C------CCCCCccccccccccccCCceEEEEEEEEEeeeCCCCCCCCCCCcEEEEEECCeE
Q 045058          410 AT----------------P------VDSTPAITAVIRSKVYHSPRLWYVRVNVVEAQDLVPTEKNHFPDVYVKAQIGNQV  467 (1005)
Q Consensus       410 ~~----------------~------~~~~~~~~~~~r~~~~~~~~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~lg~~~  467 (1005)
                      +.                |      ....+.....++.   ..|....++|+|++|-+|.+.|.+|.+||||++.+|++.
T Consensus       570 e~~e~~Ivg~fKgl~rIyp~~~~~~~p~~pr~~~~~~~---~~pi~~LvrVyvv~A~~L~p~D~ng~adpYv~l~lGk~~  646 (1105)
T KOG1326|consen  570 ECLEQQIVGEFKGLFRIYPVPRNPSSPAPPRHFLDLPK---EEPIKCLVRVYVVEAFSLQPSDGNGDADPYVKLLLGKKR  646 (1105)
T ss_pred             CCcccchhhhhhcceeeecCCCccCCCCChhhhhcccc---cCcceeeEEEEEEEeeeccccCCCCCcCceeeeeeccch
Confidence            00                0      0000111111111   235667899999999999999999999999999999976


Q ss_pred             E--eeecccCCCCCcccccEEEEEeeCCCCCeEEEEEEeccCCCCCceeEEEEEcccc-cccccccccccceeEEccCCC
Q 045058          468 L--KTKICQARTLSAVWNEDLLFVAAEPFEDHLVLTVEDRVGPGKDEIIGRVIIPLSA-IEKRADERIIHSRWFNLEKPV  544 (1005)
Q Consensus       468 ~--kT~~~~~~t~~P~w~e~f~f~v~~~~~~~l~i~V~d~d~~~~d~~iG~~~i~l~~-l~~~~~~~~~~~~w~~L~~~~  544 (1005)
                      .  +...+. +|+||+|++.|++.+..+.+..+++.|||+|..+.|+.||+..++|+. .....+.+....+-|...+..
T Consensus       647 ~~d~~~yip-~tlnPVfgkmfel~~~lp~ek~l~v~vyd~D~~~~d~~iget~iDLEnR~~T~~~a~cglaq~y~v~g~n  725 (1105)
T KOG1326|consen  647 TLDRAHYIP-NTLNPVFGKMFELECLLPFEKDLIVEVYDHDLEAQDEKIGETTIDLENRWLTRHRARCGLAQTYCVSGAN  725 (1105)
T ss_pred             hhhhhhcCc-CCCCcHHHHHHHhhcccchhhcceeEEEEeecccccchhhceehhhhhcccCcCCcccCccceeeeeccc
Confidence            4  455665 999999999999999999999999999999999999999999999965 222222222222222222111


Q ss_pred             ---------ccccc-----------------ccc--------ccccccceeEE-Ee---------ecCCccccCC----C
Q 045058          545 ---------AVDVD-----------------QLK--------KEKFSSRIHLR-VC---------LDGGYHVLDE----S  576 (1005)
Q Consensus       545 ---------~~~~~-----------------~~~--------~~~~~~~i~l~-~~---------l~~~~~~~~~----~  576 (1005)
                               .....                 ..+        ++....+..+. +.         +--.++..-+    .
T Consensus       726 ~W~d~~~ps~iL~~~~Q~~~i~~P~~~~e~~~i~~~g~~~~~d~~~~k~~~~~~L~~~~~r~~~~i~~~~~lvpehvetr  805 (1105)
T KOG1326|consen  726 IWRDRMDPSQILKEHCQPGGIPRPYYSYEVSAIKWKGESDIYDEKEAKTIEVPHLGNAWERLALWILMNQGLVPEHVETR  805 (1105)
T ss_pred             cccCccCHHHHHHHhhcccCCCCCeecCCcceEEecChhhhhcccccCCCCCcccchHHHHHHHHhhhhcCcCCcccccc
Confidence                     00000                 000        00000000000 00         0000000000    0


Q ss_pred             ccccCCCccccc----ccC------------------CCcceEEEEEEEEecCCCCCCCCCC--CCCCCcEEEEEE-C--
Q 045058          577 THYSSDLRPTAK----QLW------------------RPSIGILELGILNAVGLHPMKTRDG--RGTSDTYCVAKY-G--  629 (1005)
Q Consensus       577 ~~~~~d~~~~~~----~~~------------------~~~~g~l~v~i~~a~~L~~~~~~~~--~~~~dpyv~~~~-g--  629 (1005)
                      +.+ ++..|-..    ++|                  ++...-|+|-|..-.+....|. ++  ...+|.||+-.+ |  
T Consensus       806 tl~-~~~~p~ieqgklq~Wvd~fp~d~~~ppl~itpr~~~~~~lrviiWnt~~v~l~dd-~~~ge~~sdIyv~gw~~gde  883 (1105)
T KOG1326|consen  806 TLH-SKAFPNIEQGKLQMWVDFFPKDLYAPPLNITPRKPKKYELRVIIWNTDKVRLNDD-EITGEKMSDIYVKGWVLGDE  883 (1105)
T ss_pred             ccc-CccccchhhcccchhhhhcccccCCCCCCCCCCChhheeEEEEEeeccceeecCc-cceeeeccceEEecccccch
Confidence            000 00011000    111                  2456788998888888776543 23  335899999877 3  


Q ss_pred             CEEEEeeeccCCC----CceeccEEEEEEe-----------------C-----CCceEEEEEEeCCCcCCCCCCCCCccc
Q 045058          630 HKWVRTRTLVDNL----SPKYNEQYTWEVF-----------------D-----PATVLTVGVFDNSQLGEKSNGNKDLKI  683 (1005)
Q Consensus       630 ~~~~~T~~~~~t~----nP~wne~f~~~v~-----------------~-----~~~~l~i~v~d~~~~~~~~~~~~d~~l  683 (1005)
                      .++.+|.++++++    |-+|.-.|.|+-.                 +     .-..|.|+|||+|.++      +|++|
T Consensus       884 e~kq~tdvhyrsl~ge~~fnwr~~f~~Dyl~ae~~~vi~kke~~ws~dete~k~p~rl~iqiWD~d~fs------~Dd~L  957 (1105)
T KOG1326|consen  884 EEKQKTDVHYRSLTGEGNFNWRFVFPFDYLPAEQLCVIAKKEYSWSLDETEFKIPARLIIQIWDNDKFS------KDDFL  957 (1105)
T ss_pred             hhhcccceeeeeccCCcccceeeecccccchHhhHhhhhhhhhccccccccccCchheEEEecccCccC------hhhhh
Confidence            3467888888764    6777766655310                 1     1246999999999888      99999


Q ss_pred             EEEEEEcccccC----------------------CCEEeeeEeeeecCCCCCceeeEEEEEEEE
Q 045058          684 GKVRIRISTLET----------------------GRIYTHSYPLLVLHPTGVKKMGELHLAIRF  725 (1005)
Q Consensus       684 G~~~i~l~~l~~----------------------~~~~~~~~~L~~~~~~~~~~~G~i~l~~~~  725 (1005)
                      |..+++|+++..                      .+....|||+.........-+|.+++.+.+
T Consensus       958 g~lELdL~~~~~pa~sa~~c~~~~~~~~~vslFe~k~v~GWwP~~a~~~~~~~l~Gkvem~lei 1021 (1105)
T KOG1326|consen  958 GALELDLSDMPAPAKSAKKCSLYMKKDKTVSLFEQKTVKGWWPCQAEEGDAKVLAGKVEMSLEI 1021 (1105)
T ss_pred             hheeechhhCcCCCCCHHHCCceeccCcceehhhcccccccceeeecCCCcceecceeeeehhh
Confidence            999999998754                      234568999987754444458998888874

>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]

Probab=99.94  E-value=3.3e-24  Score=249.43  Aligned_cols=398  Identities=19%  Similarity=0.232  Sum_probs=293.1

Q ss_pred             cceeEEEEEEEEeecCCCCC--CCCCCCcEEEEEECCe-eeeeeeecCCCCCeeeeEEEEeecCCCCcEEEEEEEeCC-C
Q 045058          267 ERMYFLYVRVVKARELPAMD--LTGSIDPFVEVKIGNY-KGITKHYEKNQNPQWHQVFAFSRDRMQASVLEVVIKDKD-L  342 (1005)
Q Consensus       267 ~~~~~L~V~v~~a~~L~~~~--~~g~~dPyv~v~~~~~-~~kT~~~~~~~nP~wne~f~f~~~~~~~~~l~v~V~d~~-~  342 (1005)
                      ...|+|.|+|.+|++|...+  .++..|||+.+...+. ..||++++++.||+|||+|+..+.... +.|.++|||.+ +
T Consensus       433 ~aIGVv~vkI~sa~~lk~~d~~i~~~vDpyit~~~~~r~~gkT~v~~nt~nPvwNEt~Yi~lns~~-d~L~LslyD~n~~  511 (1227)
T COG5038         433 TAIGVVEVKIKSAEGLKKSDSTINGTVDPYITVTFSDRVIGKTRVKKNTLNPVWNETFYILLNSFT-DPLNLSLYDFNSF  511 (1227)
T ss_pred             CeeEEEEEEEeeccCcccccccccCCCCceEEEEeccccCCccceeeccCCccccceEEEEecccC-CceeEEEEecccc
Confidence            35699999999999999888  6899999999997663 469999999999999999999998776 68999999966 8


Q ss_pred             CCCceeEEEEEEceecCCCCCCCCCCCCeEEEeecCCCCccceEEEEEEEEeccCCcccccccCCCCCCCCCCCCccccc
Q 045058          343 VKDDFVGIVRFDINEVPLRVPPDSPLAPEWYRLEDKKGEKIKGELMLAVWIGTQADEAFSDAWHSDAATPVDSTPAITAV  422 (1005)
Q Consensus       343 ~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~G~i~l~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~  422 (1005)
                      .+|+.+|.+.++|..|..+.-    ...+.+.+...  .+..|++...+.|.|....-.......  +.+          
T Consensus       512 ~sd~vvG~~~l~L~~L~~~~~----~~ne~~e~~~~--~k~vGrL~yDl~ffp~~e~k~~~~~s~--e~~----------  573 (1227)
T COG5038         512 KSDKVVGSTQLDLALLHQNPV----KKNELYEFLRN--TKNVGRLTYDLRFFPVIEDKKELKGSV--EPL----------  573 (1227)
T ss_pred             CCcceeeeEEechHHhhhccc----cccceeeeecc--CccceEEEEeeeeecccCCcccccccc--CCc----------
Confidence            899999999999999886532    22223444332  235699999999887543211110000  000          


Q ss_pred             cccccccCCceEEEEEEEEEeeeCCCCCCCCCCCcEEEEEECC-eEEeeecccCCCCCcccccEEEEEeeCCCCCeEEEE
Q 045058          423 IRSKVYHSPRLWYVRVNVVEAQDLVPTEKNHFPDVYVKAQIGN-QVLKTKICQARTLSAVWNEDLLFVAAEPFEDHLVLT  501 (1005)
Q Consensus       423 ~r~~~~~~~~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~lg~-~~~kT~~~~~~t~~P~w~e~f~f~v~~~~~~~l~i~  501 (1005)
                            .....|.+.+++.++++|.... ......++++++.. ..+.|+.++ .+.+|.||+++.-.+.+.....+.+.
T Consensus       574 ------ed~n~GI~k~tl~~~~~l~~~~-~~~~~~~a~l~~~~keV~st~~~k-~t~~~~wn~~~~~~v~~~~ns~~~~~  645 (1227)
T COG5038         574 ------EDSNTGILKVTLREVKALDELS-SKKDNKSAELYTNAKEVYSTGKLK-FTNHPSWNLQYNVLVTDRKNSSIKVV  645 (1227)
T ss_pred             ------ccCCcceeEEEeeccccccCcc-ccccceeEEEEecceEEeccceee-eccCCceeeecceEeccCcceeEEEE
Confidence                  1123578999999999996543 22233348888855 455667776 99999999999999988878889999


Q ss_pred             EEeccCCCCCceeEEEEEcccccccccccccccceeEEccCCCccccccccccccccceeEEEeecCCccccCCCccccC
Q 045058          502 VEDRVGPGKDEIIGRVIIPLSAIEKRADERIIHSRWFNLEKPVAVDVDQLKKEKFSSRIHLRVCLDGGYHVLDESTHYSS  581 (1005)
Q Consensus       502 V~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~w~~L~~~~~~~~~~~~~~~~~~~i~l~~~l~~~~~~~~~~~~~~~  581 (1005)
                      +.|..   ..+.||+...+|.++....   .....||++..+.             |++.+..+..+-|-..+-      
T Consensus       646 ~~d~~---~g~~i~~~~~~l~~li~~t---~dt~~~f~~~~~k-------------g~I~~t~~W~Pi~~~~~~------  700 (1227)
T COG5038         646 TFDVQ---SGKVIATEGSTLPDLIDRT---LDTFLVFPLRNPK-------------GRIFITNYWKPIYNAGGS------  700 (1227)
T ss_pred             ecccc---cCceeccccccchHhhhcc---ccceEEEEcCCCc-------------ceEEEEeccceeeccccc------
Confidence            98864   4678888888888876543   3457899998665             567776654332211100      


Q ss_pred             CCcccccccCCCcceEEEEEEEEecCCCCCCCCCCCCCCCcEEEEEECCE-EEEeeeccCCCCceeccEEEEEEeCCCce
Q 045058          582 DLRPTAKQLWRPSIGILELGILNAVGLHPMKTRDGRGTSDTYCVAKYGHK-WVRTRTLVDNLSPKYNEQYTWEVFDPATV  660 (1005)
Q Consensus       582 d~~~~~~~~~~~~~g~l~v~i~~a~~L~~~~~~~~~~~~dpyv~~~~g~~-~~~T~~~~~t~nP~wne~f~~~v~~~~~~  660 (1005)
                          ++...+..++|.++|.|..|.+|..   ..+.+++|||+++.+++. ++||-....++||.||+....+|..+.+.
T Consensus       701 ----~s~~~~~~pIg~irv~v~~andl~n---~i~g~~~dPya~v~~n~~~k~rti~~~~~~npiw~~i~Yv~v~sk~~r  773 (1227)
T COG5038         701 ----SSKTVYDTPIGAIRVSVRKANDLRN---EIPGGKSDPYATVLVNNLVKYRTIYGSSTLNPIWNEILYVPVTSKNQR  773 (1227)
T ss_pred             ----cceeeecCccceEEEEeehhhcccc---cccCcccccceEEEecceeEEEEecccCccccceeeeEEEEecCCccE
Confidence                1112234689999999999999983   456889999999999875 57999999999999999999999999999


Q ss_pred             EEEEEEeCCCcCCCCCCCCCcccEEEEEEcccccCCC---EEeeeE----eeeecCCCCCceeeEEEEEEEEeecc
Q 045058          661 LTVGVFDNSQLGEKSNGNKDLKIGKVRIRISTLETGR---IYTHSY----PLLVLHPTGVKKMGELHLAIRFSCTS  729 (1005)
Q Consensus       661 l~i~v~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~---~~~~~~----~L~~~~~~~~~~~G~i~l~~~~~~~~  729 (1005)
                      +.++++|.+..+      +|..||.+.|+++++....   .+...+    +.......|.+-.|++.+..+|-+..
T Consensus       774 ~~l~~~~~~~sg------ddr~lg~~~i~vsn~~~k~~~s~~~~~i~g~~~t~~l~~~~~~~~~tit~~~~f~p~~  843 (1227)
T COG5038         774 LTLECMDYEESG------DDRNLGEVNINVSNVSKKDEDSALMETIDGAEETGKLSLTGKKVKGTITYKCRFYPAV  843 (1227)
T ss_pred             Eeeeeecchhcc------ccceeceeeeeeeeeeecCCCcceEEeecCcccccccccccCCcceeEEEEEEEEeec
Confidence            999999999777      8999999999999987621   111111    11111112334468999999886543

>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.94  E-value=2.3e-25  Score=249.90  Aligned_cols=222  Identities=31%  Similarity=0.469  Sum_probs=187.8

Q ss_pred             cceeeeccccceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECCe---eeeeeeecCCCCCeeeeEEEEeec--CCCCcE
Q 045058          258 KTASTYDLVERMYFLYVRVVKARELPAMDLTGSIDPFVEVKIGNY---KGITKHYEKNQNPQWHQVFAFSRD--RMQASV  332 (1005)
Q Consensus       258 ~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~~~---~~kT~~~~~~~nP~wne~f~f~~~--~~~~~~  332 (1005)
                      .++..|+.  +...|.|+|++|++|+..+..|.+||||++++.+.   +.+|++.++++||.|||+|.|.+.  ++....
T Consensus       157 ~fsl~Yd~--~~~~L~V~V~qa~~Lp~~d~~g~sdpyVK~~llPdk~~k~kT~v~r~tlnP~fnEtf~f~v~~~~l~~~~  234 (421)
T KOG1028|consen  157 QFSLQYDF--ELNLLTVRVIQAHDLPAKDRGGTSDPYVKVYLLPDKKGKFKTRVHRKTLNPVFNETFRFEVPYEELSNRV  234 (421)
T ss_pred             EEEEEecc--cCCEEEEEEEEecCCCcccCCCCCCCeeEEEEcCCCCCcceeeeeecCcCCccccceEeecCHHHhccCE
Confidence            45666665  45899999999999999997788999999999874   478999999999999999999853  566789


Q ss_pred             EEEEEEeCC-CCCCceeEEEEEEceecCCCCCCCCCCCCeEEEeecCCCCc--cceEEEEEEEEeccCCcccccccCCCC
Q 045058          333 LEVVIKDKD-LVKDDFVGIVRFDINEVPLRVPPDSPLAPEWYRLEDKKGEK--IKGELMLAVWIGTQADEAFSDAWHSDA  409 (1005)
Q Consensus       333 l~v~V~d~~-~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~--~~G~i~l~~~~~~~~d~~~~~~~~~~~  409 (1005)
                      |.+.|||+| ++++++||++.++|..+...     .....|.+|.......  ..|+|.++++|.+.             
T Consensus       235 L~l~V~~~drfsr~~~iGev~~~l~~~~~~-----~~~~~w~~l~~~~~~~~~~~gel~~sL~Y~p~-------------  296 (421)
T KOG1028|consen  235 LHLSVYDFDRFSRHDFIGEVILPLGEVDLL-----STTLFWKDLQPSSTDSEELAGELLLSLCYLPT-------------  296 (421)
T ss_pred             EEEEEEecCCcccccEEEEEEecCcccccc-----ccceeeeccccccCCcccccceEEEEEEeecC-------------
Confidence            999999999 89999999999999888764     2257799998764322  33799999998763             


Q ss_pred             CCCCCCCCccccccccccccCCceEEEEEEEEEeeeCCCCCCCCCCCcEEEEEE--CC---eEEeeecccCCCCCccccc
Q 045058          410 ATPVDSTPAITAVIRSKVYHSPRLWYVRVNVVEAQDLVPTEKNHFPDVYVKAQI--GN---QVLKTKICQARTLSAVWNE  484 (1005)
Q Consensus       410 ~~~~~~~~~~~~~~r~~~~~~~~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~l--g~---~~~kT~~~~~~t~~P~w~e  484 (1005)
                                             .+.|+|.|++|+||..++.++.+||||++.+  +.   .+.+|.+.+ ++.||+|||
T Consensus       297 -----------------------~g~ltv~v~kar~L~~~~~~~~~d~~Vk~~l~~~~~~~~kkkT~~~~-~~~npv~ne  352 (421)
T KOG1028|consen  297 -----------------------AGRLTVVVIKARNLKSMDVGGLSDPYVKVTLLDGDKRLSKKKTSVKK-KTLNPVFNE  352 (421)
T ss_pred             -----------------------CCeEEEEEEEecCCCcccCCCCCCccEEEEEecCCceeeeeeeeccc-CCCCCcccc
Confidence                                   2389999999999999999999999999999  22   355677665 999999999


Q ss_pred             EEEEEeeCC--CCCeEEEEEEeccCCCCCceeEEEEEcccc
Q 045058          485 DLLFVAAEP--FEDHLVLTVEDRVGPGKDEIIGRVIIPLSA  523 (1005)
Q Consensus       485 ~f~f~v~~~--~~~~l~i~V~d~d~~~~d~~iG~~~i~l~~  523 (1005)
                      .|.|.+...  .+..|.|+|||+|.++.+++||.+.+....
T Consensus       353 sf~F~vp~~~l~~~~l~l~V~d~d~~~~~~~iG~~~lG~~~  393 (421)
T KOG1028|consen  353 TFVFDVPPEQLAEVSLELTVWDHDTLGSNDLIGRCILGSDS  393 (421)
T ss_pred             cEEEeCCHHHhheeEEEEEEEEcccccccceeeEEEecCCC
Confidence            999988654  445799999999999999999999998765

>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.93  E-value=8.4e-25  Score=245.34  Aligned_cols=215  Identities=30%  Similarity=0.444  Sum_probs=179.9

Q ss_pred             cEEEEEEEEeecCCCCCCCCCCCcEEEEEEC---CeEeeccccCCCCCCceeeEEEEEeccCccccceEEEEEEEeCCCC
Q 045058            4 LKLGVQVVGAHNLLPKDGKGSSSAFVELYFD---GQRFRTTIKENDLNPVWNESFYFNISDASKLHYLTLEAYIYNNIGD   80 (1005)
Q Consensus         4 ~~l~V~v~~a~~L~~~d~~g~~dpyv~v~~~---~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~~   80 (1005)
                      ..|.|+|++|++|+.+|..|.+||||++++-   ..+.+|++.++|+||+|||+|.|.|... .++...|.+.|||.|+ 
T Consensus       167 ~~L~V~V~qa~~Lp~~d~~g~sdpyVK~~llPdk~~k~kT~v~r~tlnP~fnEtf~f~v~~~-~l~~~~L~l~V~~~dr-  244 (421)
T KOG1028|consen  167 NLLTVRVIQAHDLPAKDRGGTSDPYVKVYLLPDKKGKFKTRVHRKTLNPVFNETFRFEVPYE-ELSNRVLHLSVYDFDR-  244 (421)
T ss_pred             CEEEEEEEEecCCCcccCCCCCCCeeEEEEcCCCCCcceeeeeecCcCCccccceEeecCHH-HhccCEEEEEEEecCC-
Confidence            5799999999999999977889999999994   3579999999999999999999997543 3677899999999965 


Q ss_pred             CCCCcccEEEEEeCCcccCCCCceeeeEecccCCCcc-eeeeEEEEEEEEecCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 045058           81 TNSRSFLGKVCLTGNSFVPLSDSVVLHYPLEKRGIFS-HVRGELGLKVYITDDPSIKSSTPLPAAETFSTKDPSITHTHA  159 (1005)
Q Consensus        81 ~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~~-~~~G~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (1005)
                      ++++++||++.++|..+..... ...|.+|....... ...|+|.+++.+.+                            
T Consensus       245 fsr~~~iGev~~~l~~~~~~~~-~~~w~~l~~~~~~~~~~~gel~~sL~Y~p----------------------------  295 (421)
T KOG1028|consen  245 FSRHDFIGEVILPLGEVDLLST-TLFWKDLQPSSTDSEELAGELLLSLCYLP----------------------------  295 (421)
T ss_pred             cccccEEEEEEecCcccccccc-ceeeeccccccCCcccccceEEEEEEeec----------------------------
Confidence            6799999999999888866554 35799998763221 22268888876544                            


Q ss_pred             CCCCCCCCCCcccccccccCCCCCCCCCCCCCCCCCcccccCCCCccccccccCCCCCCcceeecccCCCCCCCCccccc
Q 045058          160 QPVANPVTGDTVESRHTFHHLPNPNHHQHHHQHHPSTTVVNRHVPKYEADEMKSEPQPPKLVHMYSAASSQSADYALKET  239 (1005)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (1005)
                                                                                                      
T Consensus       296 --------------------------------------------------------------------------------  295 (421)
T KOG1028|consen  296 --------------------------------------------------------------------------------  295 (421)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCCCcccCceeeccccceeeeccccceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeeeeeecCCCC
Q 045058          240 SPYLGGGKVVGGRVIHADKTASTYDLVERMYFLYVRVVKARELPAMDLTGSIDPFVEVKIGN-----YKGITKHYEKNQN  314 (1005)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~~-----~~~kT~~~~~~~n  314 (1005)
                                                  ..+.|.|.|++|++|..++.++.+||||++.+..     .+.||.+.+++.|
T Consensus       296 ----------------------------~~g~ltv~v~kar~L~~~~~~~~~d~~Vk~~l~~~~~~~~kkkT~~~~~~~n  347 (421)
T KOG1028|consen  296 ----------------------------TAGRLTVVVIKARNLKSMDVGGLSDPYVKVTLLDGDKRLSKKKTSVKKKTLN  347 (421)
T ss_pred             ----------------------------CCCeEEEEEEEecCCCcccCCCCCCccEEEEEecCCceeeeeeeecccCCCC
Confidence                                        0156889999999999999999999999999864     3468999999999


Q ss_pred             CeeeeEEEEeec--CCCCcEEEEEEEeCC-CCCCceeEEEEEEcee
Q 045058          315 PQWHQVFAFSRD--RMQASVLEVVIKDKD-LVKDDFVGIVRFDINE  357 (1005)
Q Consensus       315 P~wne~f~f~~~--~~~~~~l~v~V~d~~-~~~d~~lG~~~i~l~~  357 (1005)
                      |+|||+|.|.+.  .+....|.|+|||++ .+++++||.|.+....
T Consensus       348 pv~nesf~F~vp~~~l~~~~l~l~V~d~d~~~~~~~iG~~~lG~~~  393 (421)
T KOG1028|consen  348 PVFNETFVFDVPPEQLAEVSLELTVWDHDTLGSNDLIGRCILGSDS  393 (421)
T ss_pred             CcccccEEEeCCHHHhheeEEEEEEEEcccccccceeeEEEecCCC
Confidence            999999999865  555678999999999 8888899999998764

>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]

Probab=99.88  E-value=7.1e-22  Score=217.83  Aligned_cols=245  Identities=24%  Similarity=0.364  Sum_probs=192.4

Q ss_pred             cEEEEEEEEeecCCCCCCCCCCCcEEEEEECCe-EeeccccCCCCCCceeeEEEEEeccCccccceEEEEEEEeCCCCCC
Q 045058            4 LKLGVQVVGAHNLLPKDGKGSSSAFVELYFDGQ-RFRTTIKENDLNPVWNESFYFNISDASKLHYLTLEAYIYNNIGDTN   82 (1005)
Q Consensus         4 ~~l~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~-~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~~~~   82 (1005)
                      ..|.|+|.+|+||+.++..|..||||.|.++.+ ..||.++.+++.|-|.|.|.|.++..-    ..|.|.|||.|  .+
T Consensus         5 ~sl~vki~E~knL~~~~~~g~~D~yC~v~lD~E~v~RT~tv~ksL~PF~gEe~~~~iP~~F----~~l~fYv~D~d--~~   78 (800)
T KOG2059|consen    5 QSLKVKIGEAKNLPSYGPSGMRDCYCTVNLDQEEVCRTATVEKSLCPFFGEEFYFEIPRTF----RYLSFYVWDRD--LK   78 (800)
T ss_pred             cceeEEEeecccCCCCCCCCCcCcceEEeecchhhhhhhhhhhhcCCccccceEEecCcce----eeEEEEEeccc--cc
Confidence            468999999999999999999999999999886 799999999999999999999996433    58999999985  67


Q ss_pred             CCcccEEEEEeCCcccCCCCceeeeEecccCCCcceeeeEEEEEEEEecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 045058           83 SRSFLGKVCLTGNSFVPLSDSVVLHYPLEKRGIFSHVRGELGLKVYITDDPSIKSSTPLPAAETFSTKDPSITHTHAQPV  162 (1005)
Q Consensus        83 ~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (1005)
                      +|+.||.+.|.-.+|.... ..+.|+.|.+-...+.++|+|+|++.+.....                            
T Consensus        79 ~D~~IGKvai~re~l~~~~-~~d~W~~L~~VD~dsEVQG~v~l~l~~~e~~~----------------------------  129 (800)
T KOG2059|consen   79 RDDIIGKVAIKREDLHMYP-GKDTWFSLQPVDPDSEVQGKVHLELALTEAIQ----------------------------  129 (800)
T ss_pred             cccccceeeeeHHHHhhCC-CCccceeccccCCChhhceeEEEEEEeccccC----------------------------
Confidence            9999999999988887666 44689999988777899999999997654100                            


Q ss_pred             CCCCCCCcccccccccCCCCCCCCCCCCCCCCCcccccCCCCccccccccCCCCCCcceeecccCCCCCCCCcccccCCC
Q 045058          163 ANPVTGDTVESRHTFHHLPNPNHHQHHHQHHPSTTVVNRHVPKYEADEMKSEPQPPKLVHMYSAASSQSADYALKETSPY  242 (1005)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (1005)
                                                   +                                                  
T Consensus       130 -----------------------------~--------------------------------------------------  130 (800)
T KOG2059|consen  130 -----------------------------S--------------------------------------------------  130 (800)
T ss_pred             -----------------------------C--------------------------------------------------
Confidence                                         0                                                  


Q ss_pred             CCCCcccCceeeccccceeeeccccceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECCee----eeeeeecCCCCCeee
Q 045058          243 LGGGKVVGGRVIHADKTASTYDLVERMYFLYVRVVKARELPAMDLTGSIDPFVEVKIGNYK----GITKHYEKNQNPQWH  318 (1005)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~~~~----~kT~~~~~~~nP~wn  318 (1005)
                        .                         -+.-++.+++++.+.. ++.+|||+.+...+..    .+|++++++.+|.|+
T Consensus       131 --~-------------------------~~~c~~L~~r~~~P~~-~~~~dp~~~v~~~g~~~~~~~~T~~~kkt~~p~~~  182 (800)
T KOG2059|consen  131 --S-------------------------GLVCHVLKTRQGLPII-NGQCDPFARVTLCGPSKLKEKKTKVKKKTTNPQFD  182 (800)
T ss_pred             --C-------------------------cchhhhhhhcccCcee-CCCCCcceEEeecccchhhccccceeeeccCcchh
Confidence              0                         0011122233444443 4559999999987633    589999999999999


Q ss_pred             eEEEEeecCC---------------CCcEEEEEEEeCC--CCCCceeEEEEEEceecCCCCCCCCCCCCeEEEeecCCCC
Q 045058          319 QVFAFSRDRM---------------QASVLEVVIKDKD--LVKDDFVGIVRFDINEVPLRVPPDSPLAPEWYRLEDKKGE  381 (1005)
Q Consensus       319 e~f~f~~~~~---------------~~~~l~v~V~d~~--~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~  381 (1005)
                      |.|.|.+...               ....|.+++|++.  ..+++|+|++.+++..+...     .....||.|.....+
T Consensus       183 Ev~~f~~~~~~~~s~ks~~~~~~e~~~l~irv~lW~~~~~~~~~~FlGevrv~v~~~~~~-----s~p~~W~~Lqp~~~g  257 (800)
T KOG2059|consen  183 EVFYFEVTREESYSKKSLFMPEEEDDMLEIRVDLWNDLNLVINDVFLGEVRVPVDVLRQK-----SSPAAWYYLQPRPNG  257 (800)
T ss_pred             hheeeeeccccccccchhcCcccCCceeeEEEeeccchhhhhhhhhceeEEeehhhhhhc-----cCccceEEEecCCCc
Confidence            9999986544               3356888999954  45699999999999887743     345679999876432


Q ss_pred             c------cceEEEEEEEEec
Q 045058          382 K------IKGELMLAVWIGT  395 (1005)
Q Consensus       382 ~------~~G~i~l~~~~~~  395 (1005)
                      +      ..|.+++.+.|..
T Consensus       258 ~~~~~~~~lGslrl~v~y~~  277 (800)
T KOG2059|consen  258 EKSSDGGDLGSLRLNVTYTE  277 (800)
T ss_pred             ccCCCCCCccceeeeEEeee
Confidence            2      6789999988753

>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.87  E-value=1.2e-21  Score=181.65  Aligned_cols=125  Identities=66%  Similarity=1.099  Sum_probs=108.1

Q ss_pred             EEEEEEEEecCCCCCCCCCCCCCCCcEEEEEECCEEEEeeeccCCCCceeccEEEEEEeCCCceEEEEEEeCCCcCCCCC
Q 045058          597 ILELGILNAVGLHPMKTRDGRGTSDTYCVAKYGHKWVRTRTLVDNLSPKYNEQYTWEVFDPATVLTVGVFDNSQLGEKSN  676 (1005)
Q Consensus       597 ~l~v~i~~a~~L~~~~~~~~~~~~dpyv~~~~g~~~~~T~~~~~t~nP~wne~f~~~v~~~~~~l~i~v~d~~~~~~~~~  676 (1005)
                      .|+|+|++|+||+.+..+|+.|.+||||++++|++++||+++.+++||+|||+|.|.+.++...|.|+|||++.++.+..
T Consensus         1 ~L~v~v~~A~~~~~l~~~d~~g~sDPYv~i~~g~~~~rTk~~~~~~nP~WnE~f~f~v~~~~~~l~v~V~d~d~~~~~~~   80 (126)
T cd08379           1 ILEVGILGAQGLDVLRAKDGRGSTDAYCVAKYGPKWVRTRTVEDSSNPRWNEQYTWPVYDPCTVLTVGVFDNSQSHWKEA   80 (126)
T ss_pred             CeEEEEEEeECCccccccccCCCCCeeEEEEECCEEeEcCcccCCCCCcceeEEEEEecCCCCEEEEEEEECCCcccccc
Confidence            48999999999444335677899999999999999999999999999999999999999888899999999986521111


Q ss_pred             CCCCcccEEEEEEcccccCCCEEeeeEeeeecCCCCCceeeEEEE
Q 045058          677 GNKDLKIGKVRIRISTLETGRIYTHSYPLLVLHPTGVKKMGELHL  721 (1005)
Q Consensus       677 ~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~G~i~l  721 (1005)
                      ..+|++||++.|+|+.+..+..+..||+|.....++.++.|+|++
T Consensus        81 ~~~dd~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~g~l~~  125 (126)
T cd08379          81 VQPDVLIGKVRIRLSTLEDDRVYAHSYPLLSLNPSGVKKMGELEC  125 (126)
T ss_pred             CCCCceEEEEEEEHHHccCCCEEeeEEEeEeCCCCCccCCcEEEe
Confidence            237999999999999999999999999999888777778899886

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate

>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]

Probab=99.87  E-value=9.9e-22  Score=216.73  Aligned_cols=250  Identities=20%  Similarity=0.335  Sum_probs=195.4

Q ss_pred             EEEEEEEEeeeCCCCCCCCCCCcEEEEEECC-eEEeeecccCCCCCcccccEEEEEeeCCCCCeEEEEEEeccCCCCCce
Q 045058          435 YVRVNVVEAQDLVPTEKNHFPDVYVKAQIGN-QVLKTKICQARTLSAVWNEDLLFVAAEPFEDHLVLTVEDRVGPGKDEI  513 (1005)
Q Consensus       435 ~L~V~v~~a~~L~~~d~~~~~dpyv~v~lg~-~~~kT~~~~~~t~~P~w~e~f~f~v~~~~~~~l~i~V~d~d~~~~d~~  513 (1005)
                      .|.|.|.+|+||++.+..|..||||.|.+.. ...+|.++. +++.|.|.|.|.|.+...+ ..|.+.|||.| +++|+.
T Consensus         6 sl~vki~E~knL~~~~~~g~~D~yC~v~lD~E~v~RT~tv~-ksL~PF~gEe~~~~iP~~F-~~l~fYv~D~d-~~~D~~   82 (800)
T KOG2059|consen    6 SLKVKIGEAKNLPSYGPSGMRDCYCTVNLDQEEVCRTATVE-KSLCPFFGEEFYFEIPRTF-RYLSFYVWDRD-LKRDDI   82 (800)
T ss_pred             ceeEEEeecccCCCCCCCCCcCcceEEeecchhhhhhhhhh-hhcCCccccceEEecCcce-eeEEEEEeccc-cccccc
Confidence            5899999999999999999999999999965 689999998 9999999999999996544 45999999999 999999


Q ss_pred             eEEEEEcccccccccccccccceeEEccCCCccccccccccccccceeEEEeecCCccccCCCccccCCCcccccccCCC
Q 045058          514 IGRVIIPLSAIEKRADERIIHSRWFNLEKPVAVDVDQLKKEKFSSRIHLRVCLDGGYHVLDESTHYSSDLRPTAKQLWRP  593 (1005)
Q Consensus       514 iG~~~i~l~~l~~~~~~~~~~~~w~~L~~~~~~~~~~~~~~~~~~~i~l~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~  593 (1005)
                      ||.+.|.-.++....    ..+.|+.|.....       +...+|++++++.+....             ++        
T Consensus        83 IGKvai~re~l~~~~----~~d~W~~L~~VD~-------dsEVQG~v~l~l~~~e~~-------------~~--------  130 (800)
T KOG2059|consen   83 IGKVAIKREDLHMYP----GKDTWFSLQPVDP-------DSEVQGKVHLELALTEAI-------------QS--------  130 (800)
T ss_pred             cceeeeeHHHHhhCC----CCccceeccccCC-------ChhhceeEEEEEEecccc-------------CC--------
Confidence            999999988887654    4789999998875       456679999999874321             11        


Q ss_pred             cceEEEEEEEEecCCCCCCCCCCCCCCCcEEEEEECCEE----EEeeeccCCCCceeccEEEEEEeCC------------
Q 045058          594 SIGILELGILNAVGLHPMKTRDGRGTSDTYCVAKYGHKW----VRTRTLVDNLSPKYNEQYTWEVFDP------------  657 (1005)
Q Consensus       594 ~~g~l~v~i~~a~~L~~~~~~~~~~~~dpyv~~~~g~~~----~~T~~~~~t~nP~wne~f~~~v~~~------------  657 (1005)
                        ..+...++.++++.|..    ++.+||||++...+.+    .+|+++++|.+|.|+|.|.|.+...            
T Consensus       131 --~~~~c~~L~~r~~~P~~----~~~~dp~~~v~~~g~~~~~~~~T~~~kkt~~p~~~Ev~~f~~~~~~~~s~ks~~~~~  204 (800)
T KOG2059|consen  131 --SGLVCHVLKTRQGLPII----NGQCDPFARVTLCGPSKLKEKKTKVKKKTTNPQFDEVFYFEVTREESYSKKSLFMPE  204 (800)
T ss_pred             --CcchhhhhhhcccCcee----CCCCCcceEEeecccchhhccccceeeeccCcchhhheeeeeccccccccchhcCcc
Confidence              11222333444555543    5669999999986554    4999999999999999999988532            


Q ss_pred             ----CceEEEEEEeCCCcCCCCCCCCCcccEEEEEEcccccCCCEEeeeEeeeecCCCCC----ceeeEEEEEEEEeecc
Q 045058          658 ----ATVLTVGVFDNSQLGEKSNGNKDLKIGKVRIRISTLETGRIYTHSYPLLVLHPTGV----KKMGELHLAIRFSCTS  729 (1005)
Q Consensus       658 ----~~~l~i~v~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~----~~~G~i~l~~~~~~~~  729 (1005)
                          .-.|.+.+|++..+.     ..++|+|.+++|+..+........||-|.....+..    .--|.+++.++|+...
T Consensus       205 ~e~~~l~irv~lW~~~~~~-----~~~~FlGevrv~v~~~~~~s~p~~W~~Lqp~~~g~~~~~~~~lGslrl~v~y~~D~  279 (800)
T KOG2059|consen  205 EEDDMLEIRVDLWNDLNLV-----INDVFLGEVRVPVDVLRQKSSPAAWYYLQPRPNGEKSSDGGDLGSLRLNVTYTEDH  279 (800)
T ss_pred             cCCceeeEEEeeccchhhh-----hhhhhceeEEeehhhhhhccCccceEEEecCCCcccCCCCCCccceeeeEEeeece
Confidence                237889999854322     259999999999999886666789999986543211    1258899999986544


Q ss_pred             c
Q 045058          730 F  730 (1005)
Q Consensus       730 ~  730 (1005)
                      +
T Consensus       280 V  280 (800)
T KOG2059|consen  280 V  280 (800)
T ss_pred             e
Confidence            3

>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.86  E-value=2.4e-21  Score=183.36  Aligned_cols=127  Identities=64%  Similarity=1.036  Sum_probs=110.4

Q ss_pred             EEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEeeccccCCCCCCceeeEEEEEeccCccccceEEEEEEEeCCCCCCCC
Q 045058            5 KLGVQVVGAHNLLPKDGKGSSSAFVELYFDGQRFRTTIKENDLNPVWNESFYFNISDASKLHYLTLEAYIYNNIGDTNSR   84 (1005)
Q Consensus         5 ~l~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~~~~~d   84 (1005)
                      +|+|+|++|++|..++..|.+||||+|+++++++||+++++++||+|||+|.|.+..+.......|.|.|||++...++|
T Consensus         1 ~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~~~rT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~~~~~d   80 (127)
T cd04022           1 KLVVEVVDAQDLMPKDGQGSSSAYVELDFDGQKKRTRTKPKDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRRSGRRR   80 (127)
T ss_pred             CeEEEEEEeeCCCCCCCCCCcCcEEEEEECCEEecceeEcCCCCCccceEEEEEccCHHHccCCeEEEEEeeCCCCcCCC
Confidence            48999999999999998899999999999999999999999999999999999997654444568999999985443379


Q ss_pred             cccEEEEEeCCcccCCCCceeeeEecccCCCcceeeeEEEEEEEEec
Q 045058           85 SFLGKVCLTGNSFVPLSDSVVLHYPLEKRGIFSHVRGELGLKVYITD  131 (1005)
Q Consensus        85 ~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~~~  131 (1005)
                      +|||++.+++.++...+.....||+|++++..++++|+|+|++++++
T Consensus        81 ~~lG~v~i~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~~  127 (127)
T cd04022          81 SFLGRVRISGTSFVPPSEAVVQRYPLEKRGLFSRVRGEIGLKVYITD  127 (127)
T ss_pred             CeeeEEEEcHHHcCCCCCccceEeEeeeCCCCCCccEEEEEEEEEcC
Confidence            99999999999998655556789999988766678999999998864

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates

>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip)

Probab=99.86  E-value=3.8e-21  Score=177.20  Aligned_cols=118  Identities=21%  Similarity=0.352  Sum_probs=103.3

Q ss_pred             eEEEEEEEEecCCCCCCCCCCCCCCCcEEEEEECCEEEEeeeccC-CCCceeccEEEEEEeCCCceEEEEEEeCCCcCCC
Q 045058          596 GILELGILNAVGLHPMKTRDGRGTSDTYCVAKYGHKWVRTRTLVD-NLSPKYNEQYTWEVFDPATVLTVGVFDNSQLGEK  674 (1005)
Q Consensus       596 g~l~v~i~~a~~L~~~~~~~~~~~~dpyv~~~~g~~~~~T~~~~~-t~nP~wne~f~~~v~~~~~~l~i~v~d~~~~~~~  674 (1005)
                      |.|+|+|++|++|+..   + .|++||||++.+|++.+||+++.+ +.||+|||+|.|++.+....|.|+|||+|.++  
T Consensus         2 g~L~v~v~~Ak~l~~~---~-~g~sDPYv~i~lg~~~~kT~v~~~~~~nP~WNe~F~f~v~~~~~~l~~~V~d~d~~~--   75 (121)
T cd04016           2 GRLSITVVQAKLVKNY---G-LTRMDPYCRIRVGHAVYETPTAYNGAKNPRWNKTIQCTLPEGVDSIYIEIFDERAFT--   75 (121)
T ss_pred             cEEEEEEEEccCCCcC---C-CCCCCceEEEEECCEEEEeEEccCCCCCCccCeEEEEEecCCCcEEEEEEEeCCCCc--
Confidence            8999999999988743   3 589999999999999999999876 79999999999999876678999999999877  


Q ss_pred             CCCCCCcccEEEEEEcc-cccCCCEEeeeEeeeecCCCCCceeeEEEEEEEE
Q 045058          675 SNGNKDLKIGKVRIRIS-TLETGRIYTHSYPLLVLHPTGVKKMGELHLAIRF  725 (1005)
Q Consensus       675 ~~~~~d~~lG~~~i~l~-~l~~~~~~~~~~~L~~~~~~~~~~~G~i~l~~~~  725 (1005)
                          +|++||.+.|+|. .+..++..+.||+|...  ++..+.|+|+|.++|
T Consensus        76 ----~dd~iG~~~i~l~~~~~~g~~~~~W~~L~~~--~~~~~~g~i~l~l~y  121 (121)
T cd04016          76 ----MDERIAWTHITIPESVFNGETLDDWYSLSGK--QGEDKEGMINLVFSY  121 (121)
T ss_pred             ----CCceEEEEEEECchhccCCCCccccEeCcCc--cCCCCceEEEEEEeC
Confidence                8999999999996 58888878999999743  344467999999975

Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian

>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.86  E-value=6e-21  Score=184.11  Aligned_cols=150  Identities=68%  Similarity=1.144  Sum_probs=129.4

Q ss_pred             EEEEEEEEeeeCCCCCCCCCCCcEEEEEECCeEEeeecccCCCCCcccccEEEEEeeCCCCCeEEEEEEeccCCCCCcee
Q 045058          435 YVRVNVVEAQDLVPTEKNHFPDVYVKAQIGNQVLKTKICQARTLSAVWNEDLLFVAAEPFEDHLVLTVEDRVGPGKDEII  514 (1005)
Q Consensus       435 ~L~V~v~~a~~L~~~d~~~~~dpyv~v~lg~~~~kT~~~~~~t~~P~w~e~f~f~v~~~~~~~l~i~V~d~d~~~~d~~i  514 (1005)
                      .|+|+|++|+||+..+..|.+||||++.++++..+|+++.+++.||.|||.|.|.+.++..+.|.|.|+|++..+++++|
T Consensus         1 ~L~V~Vi~A~~L~~~d~~g~sDPYV~v~l~~~~~kTk~~~~~t~nP~WNE~F~f~v~~~~~~~l~v~V~d~~~~~~dd~l   80 (150)
T cd04019           1 YLRVTVIEAQDLVPSDKNRVPEVFVKAQLGNQVLRTRPSQTRNGNPSWNEELMFVAAEPFEDHLILSVEDRVGPNKDEPL   80 (150)
T ss_pred             CEEEEEEEeECCCCCCCCCCCCeEEEEEECCEEeeeEeccCCCCCCcccCcEEEEecCccCCeEEEEEEEecCCCCCCeE
Confidence            37999999999999999999999999999999999999863479999999999999877777899999999988889999


Q ss_pred             EEEEEcccccccccccccccceeEEccCCCccccccccccccccceeEEEeecCCccccCCCccccCCCcc
Q 045058          515 GRVIIPLSAIEKRADERIIHSRWFNLEKPVAVDVDQLKKEKFSSRIHLRVCLDGGYHVLDESTHYSSDLRP  585 (1005)
Q Consensus       515 G~~~i~l~~l~~~~~~~~~~~~w~~L~~~~~~~~~~~~~~~~~~~i~l~~~l~~~~~~~~~~~~~~~d~~~  585 (1005)
                      |++.|+|+++...........+||+|....+..+ ..+..+.+|++++++++++++++.+++.+|++|++|
T Consensus        81 G~v~i~L~~l~~~~~~~~~~~~W~~L~~~~~~~~-~~k~~k~~g~l~l~i~~~~~~~~~~~~~~~~~~~~~  150 (150)
T cd04019          81 GRAVIPLNDIERRVDDRPVPSRWFSLERPGGAME-QKKKRKFASRIHLRLCLDGGYHVLDESTHYSSDLRP  150 (150)
T ss_pred             EEEEEEHHHCcccCCCCccCCceEECcCCCCccc-ccccCcccccEEEEEEecCcceEeecccccccCCCC
Confidence            9999999998765434456789999998764222 123456789999999999999999999999998875

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates

>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip)

Probab=99.84  E-value=4.8e-20  Score=169.91  Aligned_cols=119  Identities=13%  Similarity=0.146  Sum_probs=99.5

Q ss_pred             CcEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEeeccccCC-CCCCceeeEEEEEeccCccccceEEEEEEEeCCCCC
Q 045058            3 NLKLGVQVVGAHNLLPKDGKGSSSAFVELYFDGQRFRTTIKEN-DLNPVWNESFYFNISDASKLHYLTLEAYIYNNIGDT   81 (1005)
Q Consensus         3 ~~~l~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~T~v~~~-t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~~~   81 (1005)
                      .|.|+|+|++|++|+..+ .|++||||+|.++++++||++..+ +.||+|||+|.|.+....    ..|.|+|||++. +
T Consensus         1 ~g~L~v~v~~Ak~l~~~~-~g~sDPYv~i~lg~~~~kT~v~~~~~~nP~WNe~F~f~v~~~~----~~l~~~V~d~d~-~   74 (121)
T cd04016           1 VGRLSITVVQAKLVKNYG-LTRMDPYCRIRVGHAVYETPTAYNGAKNPRWNKTIQCTLPEGV----DSIYIEIFDERA-F   74 (121)
T ss_pred             CcEEEEEEEEccCCCcCC-CCCCCceEEEEECCEEEEeEEccCCCCCCccCeEEEEEecCCC----cEEEEEEEeCCC-C
Confidence            378999999999988766 789999999999999999998865 899999999999996532    479999999964 5


Q ss_pred             CCCcccEEEEEeCCc-ccCCCCceeeeEecccCCCcceeeeEEEEEEEE
Q 045058           82 NSRSFLGKVCLTGNS-FVPLSDSVVLHYPLEKRGIFSHVRGELGLKVYI  129 (1005)
Q Consensus        82 ~~d~~lG~~~i~l~~-l~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~  129 (1005)
                      ++|++||++.|++.. +.. ++..+.||+|.+..+. ...|+|+|++.+
T Consensus        75 ~~dd~iG~~~i~l~~~~~~-g~~~~~W~~L~~~~~~-~~~g~i~l~l~y  121 (121)
T cd04016          75 TMDERIAWTHITIPESVFN-GETLDDWYSLSGKQGE-DKEGMINLVFSY  121 (121)
T ss_pred             cCCceEEEEEEECchhccC-CCCccccEeCcCccCC-CCceEEEEEEeC
Confidence            689999999999964 544 4445789999876543 567999999864

Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian

>KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]

Probab=99.82  E-value=3.2e-20  Score=172.87  Aligned_cols=118  Identities=31%  Similarity=0.492  Sum_probs=100.6

Q ss_pred             cceEEEEEEEEecCCCCCCCCCCCCCCCcEEEEEECCEEEEeeeccCCCCceeccEEEEEEeCCCceEEEEEEeCCCcCC
Q 045058          594 SIGILELGILNAVGLHPMKTRDGRGTSDTYCVAKYGHKWVRTRTLVDNLSPKYNEQYTWEVFDPATVLTVGVFDNSQLGE  673 (1005)
Q Consensus       594 ~~g~l~v~i~~a~~L~~~~~~~~~~~~dpyv~~~~g~~~~~T~~~~~t~nP~wne~f~~~v~~~~~~l~i~v~d~~~~~~  673 (1005)
                      .+|.|+|.|.+|.||..   +|..++|||||++++|+++.||+++++++||+|||.|+|.|.+++..|.++|||+|.++ 
T Consensus         4 ~vGLL~v~v~~g~~L~~---rD~~~sSDPyVVl~lg~q~lkT~~v~~n~NPeWNe~ltf~v~d~~~~lkv~VyD~D~fs-   79 (168)
T KOG1030|consen    4 LVGLLRVRVKRGKNLAI---RDFLGSSDPYVVLELGNQKLKTRVVYKNLNPEWNEELTFTVKDPNTPLKVTVYDKDTFS-   79 (168)
T ss_pred             cceEEEEEEEeecCeee---eccccCCCCeEEEEECCeeeeeeeecCCCCCcccceEEEEecCCCceEEEEEEeCCCCC-
Confidence            46999999999999995   45668999999999999999999999999999999999999999999999999999887 


Q ss_pred             CCCCCCCcccEEEEEEcccccCCCEEeeeEeeeecCCCCCceeeEEEEEEE
Q 045058          674 KSNGNKDLKIGKVRIRISTLETGRIYTHSYPLLVLHPTGVKKMGELHLAIR  724 (1005)
Q Consensus       674 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~G~i~l~~~  724 (1005)
                           .||+||.++|+|..+....  ..+| |......|... |+|.++..
T Consensus        80 -----~dD~mG~A~I~l~p~~~~~--~~~~-l~~~~~~gt~~-~~v~~s~d  121 (168)
T KOG1030|consen   80 -----SDDFMGEATIPLKPLLEAQ--KMDY-LKLELLTGTAI-GKVLLSRD  121 (168)
T ss_pred             -----cccccceeeeccHHHHHHh--hhhc-cccccCCCcEe-eEEEeccc
Confidence                 9999999999999988776  3455 54344444433 66555444

>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I

Probab=99.82  E-value=1.3e-19  Score=171.17  Aligned_cols=118  Identities=26%  Similarity=0.397  Sum_probs=101.4

Q ss_pred             EEEEEEEecCCCCCCCCCCCCCCCcEEEEEECCEEEEeeeccCCCCceeccEEEEEEeC------CCceEEEEEEeCCCc
Q 045058          598 LELGILNAVGLHPMKTRDGRGTSDTYCVAKYGHKWVRTRTLVDNLSPKYNEQYTWEVFD------PATVLTVGVFDNSQL  671 (1005)
Q Consensus       598 l~v~i~~a~~L~~~~~~~~~~~~dpyv~~~~g~~~~~T~~~~~t~nP~wne~f~~~v~~------~~~~l~i~v~d~~~~  671 (1005)
                      ++|+|++|+||+++   +..|.+||||++.+++..+||+++++++||+|||.|.|.+..      ....|.|+|||++.+
T Consensus         1 ~~V~V~~A~~L~~~---d~~g~~dpYv~v~l~~~~~kT~v~~~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~~   77 (126)
T cd08682           1 VQVTVLQARGLLCK---GKSGTNDAYVIIQLGKEKYSTSVKEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNLL   77 (126)
T ss_pred             CEEEEEECcCCcCC---CCCcCCCceEEEEECCeeeeeeeecCCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEcccc
Confidence            57999999999965   457889999999999999999999999999999999999976      367899999999976


Q ss_pred             CCCCCCCCCcccEEEEEEccccc--CCCEEeeeEeeeecCCCCCceeeEEEEEEE
Q 045058          672 GEKSNGNKDLKIGKVRIRISTLE--TGRIYTHSYPLLVLHPTGVKKMGELHLAIR  724 (1005)
Q Consensus       672 ~~~~~~~~d~~lG~~~i~l~~l~--~~~~~~~~~~L~~~~~~~~~~~G~i~l~~~  724 (1005)
                      +      +|++||++.|+|+++.  .+.....||+|........+..|+|+|+++
T Consensus        78 ~------~d~~iG~~~i~l~~l~~~~~~~~~~W~~L~~~~~~~~~~~Gei~l~~~  126 (126)
T cd08682          78 G------LDKFLGQVSIPLNDLDEDKGRRRTRWFKLESKPGKDDKERGEIEVDIQ  126 (126)
T ss_pred             C------CCceeEEEEEEHHHhhccCCCcccEEEECcCCCCCCccccceEEEEeC
Confidence            6      7999999999999987  566678999998544433445799999873

Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member

>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I

Probab=99.81  E-value=1.5e-19  Score=170.77  Aligned_cols=121  Identities=24%  Similarity=0.383  Sum_probs=101.3

Q ss_pred             EEEEEEEeecCCCCCCCCCCCcEEEEEECCeEeeccccCCCCCCceeeEEEEEeccC--ccccceEEEEEEEeCCCCCCC
Q 045058            6 LGVQVVGAHNLLPKDGKGSSSAFVELYFDGQRFRTTIKENDLNPVWNESFYFNISDA--SKLHYLTLEAYIYNNIGDTNS   83 (1005)
Q Consensus         6 l~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~--~~~~~~~l~v~V~d~~~~~~~   83 (1005)
                      ++|+|++|+||..++..|.+||||+|++++++++|+++++++||+|||+|.|.+...  +......|.|.|||++. .++
T Consensus         1 ~~V~V~~A~~L~~~d~~g~~dpYv~v~l~~~~~kT~v~~~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~-~~~   79 (126)
T cd08682           1 VQVTVLQARGLLCKGKSGTNDAYVIIQLGKEKYSTSVKEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNL-LGL   79 (126)
T ss_pred             CEEEEEECcCCcCCCCCcCCCceEEEEECCeeeeeeeecCCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEccc-cCC
Confidence            579999999999999999999999999999999999999999999999999998652  11234689999999954 458


Q ss_pred             CcccEEEEEeCCcccC-CCCceeeeEecccCC-CcceeeeEEEEEE
Q 045058           84 RSFLGKVCLTGNSFVP-LSDSVVLHYPLEKRG-IFSHVRGELGLKV  127 (1005)
Q Consensus        84 d~~lG~~~i~l~~l~~-~~~~~~~w~~L~~~~-~~~~~~G~i~l~~  127 (1005)
                      |++||++.|++.++.. .+.....||+|.++. ...+.+|+|+|++
T Consensus        80 d~~iG~~~i~l~~l~~~~~~~~~~W~~L~~~~~~~~~~~Gei~l~~  125 (126)
T cd08682          80 DKFLGQVSIPLNDLDEDKGRRRTRWFKLESKPGKDDKERGEIEVDI  125 (126)
T ss_pred             CceeEEEEEEHHHhhccCCCcccEEEECcCCCCCCccccceEEEEe
Confidence            9999999999999862 333446899998653 3345789999987

Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member

>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.80  E-value=5.1e-19  Score=164.16  Aligned_cols=116  Identities=27%  Similarity=0.398  Sum_probs=97.8

Q ss_pred             EEEEEEEEeec---CCCCCCCCCCCcEEEEEECCeEeeccccCCCCCCceeeEEEEEeccCccccceEEEEEEEeCCCCC
Q 045058            5 KLGVQVVGAHN---LLPKDGKGSSSAFVELYFDGQRFRTTIKENDLNPVWNESFYFNISDASKLHYLTLEAYIYNNIGDT   81 (1005)
Q Consensus         5 ~l~V~v~~a~~---L~~~d~~g~~dpyv~v~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~~~   81 (1005)
                      .|+|+|++|+|   |..+|..|.+||||+|++++++.||+++++++||+|||+|.|.+.+..    ..|.|+|||++...
T Consensus         1 ~L~v~v~~A~~~~~l~~~d~~g~sDPYv~i~~g~~~~rTk~~~~~~nP~WnE~f~f~v~~~~----~~l~v~V~d~d~~~   76 (126)
T cd08379           1 ILEVGILGAQGLDVLRAKDGRGSTDAYCVAKYGPKWVRTRTVEDSSNPRWNEQYTWPVYDPC----TVLTVGVFDNSQSH   76 (126)
T ss_pred             CeEEEEEEeECCccccccccCCCCCeeEEEEECCEEeEcCcccCCCCCcceeEEEEEecCCC----CEEEEEEEECCCcc
Confidence            38999999999   888999999999999999999999999999999999999999997644    38999999986532


Q ss_pred             -----CCCcccEEEEEeCCcccCCCCceeeeEecccCCC-cceeeeEEEE
Q 045058           82 -----NSRSFLGKVCLTGNSFVPLSDSVVLHYPLEKRGI-FSHVRGELGL  125 (1005)
Q Consensus        82 -----~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~-~~~~~G~i~l  125 (1005)
                           .+|++||++.+++.++..+.. ...||+|..... ..+..|+|++
T Consensus        77 ~~~~~~~dd~lG~~~i~l~~l~~~~~-~~~~~~L~~~~~~~~~~~g~l~~  125 (126)
T cd08379          77 WKEAVQPDVLIGKVRIRLSTLEDDRV-YAHSYPLLSLNPSGVKKMGELEC  125 (126)
T ss_pred             ccccCCCCceEEEEEEEHHHccCCCE-EeeEEEeEeCCCCCccCCcEEEe
Confidence                 389999999999999877554 458999986532 2345677764

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate

>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD)

Probab=99.80  E-value=8.8e-19  Score=171.04  Aligned_cols=124  Identities=25%  Similarity=0.327  Sum_probs=108.2

Q ss_pred             ceEEEEEEEEecCCCCCCCC---------------------------CCCCCCCcEEEEEECCEE-EEeeeccCCCCcee
Q 045058          595 IGILELGILNAVGLHPMKTR---------------------------DGRGTSDTYCVAKYGHKW-VRTRTLVDNLSPKY  646 (1005)
Q Consensus       595 ~g~l~v~i~~a~~L~~~~~~---------------------------~~~~~~dpyv~~~~g~~~-~~T~~~~~t~nP~w  646 (1005)
                      -|.|.|+|++|++|++||..                           ...|.+||||++.+++.. .||+++.++.||+|
T Consensus         6 hG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~~~~~~rT~v~~~~~nP~W   85 (158)
T cd04015           6 HGTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLAGARVARTRVIENSENPVW   85 (158)
T ss_pred             eeeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEECCeEeeEEEEeCCCCCCcc
Confidence            39999999999999998721                           256789999999998765 59999999999999


Q ss_pred             ccEEEEEEeCCCceEEEEEEeCCCcCCCCCCCCCcccEEEEEEcccccCCCEEeeeEeeeecCCCCCceeeEEEEEEEE
Q 045058          647 NEQYTWEVFDPATVLTVGVFDNSQLGEKSNGNKDLKIGKVRIRISTLETGRIYTHSYPLLVLHPTGVKKMGELHLAIRF  725 (1005)
Q Consensus       647 ne~f~~~v~~~~~~l~i~v~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~G~i~l~~~~  725 (1005)
                      ||.|.|.+.++.+.|.|.|+|++.++       +++||++.|+|+++..+...+.||+|.....+..+..|+|++.++|
T Consensus        86 nE~F~~~~~~~~~~l~~~V~d~d~~~-------~~~IG~~~i~l~~l~~g~~~~~w~~L~~~~~~~~~~~~~l~v~~~f  157 (158)
T cd04015          86 NESFHIYCAHYASHVEFTVKDNDVVG-------AQLIGRAYIPVEDLLSGEPVEGWLPILDSNGKPPKPGAKIRVSLQF  157 (158)
T ss_pred             ceEEEEEccCCCCEEEEEEEeCCCcC-------CcEEEEEEEEhHHccCCCCcceEEECcCCCCCCCCCCCEEEEEEEE
Confidence            99999999888889999999998653       6899999999999998888899999986655555556899999998

PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic

>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

Probab=99.80  E-value=1.2e-18  Score=163.43  Aligned_cols=118  Identities=25%  Similarity=0.368  Sum_probs=104.2

Q ss_pred             EEEEEEEecCCCCCCCCCCCCCCCcEEEEEECC-EEEEeeeccCCCCceeccEEEEEEeCCCceEEEEEEeCCCcCCCCC
Q 045058          598 LELGILNAVGLHPMKTRDGRGTSDTYCVAKYGH-KWVRTRTLVDNLSPKYNEQYTWEVFDPATVLTVGVFDNSQLGEKSN  676 (1005)
Q Consensus       598 l~v~i~~a~~L~~~~~~~~~~~~dpyv~~~~g~-~~~~T~~~~~t~nP~wne~f~~~v~~~~~~l~i~v~d~~~~~~~~~  676 (1005)
                      |+|+|++|+||+..+   ..|.+||||++.+++ ..++|+++.+++||+|||.|.|.+.++...|.|+|||++.++    
T Consensus         2 L~v~v~~a~~L~~~d---~~g~~Dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~l~~~v~D~d~~~----   74 (121)
T cd04042           2 LDIHLKEGRNLAARD---RGGTSDPYVKFKYGGKTVYKSKTIYKNLNPVWDEKFTLPIEDVTQPLYIKVFDYDRGL----   74 (121)
T ss_pred             eEEEEEEeeCCCCcC---CCCCCCCeEEEEECCEEEEEeeeccCCCCCccceeEEEEecCCCCeEEEEEEeCCCCC----
Confidence            789999999999654   468899999999987 578999999999999999999999887889999999999776    


Q ss_pred             CCCCcccEEEEEEcccccCCCEEeeeEeeeecCCCCCceeeEEEEEEEEe
Q 045058          677 GNKDLKIGKVRIRISTLETGRIYTHSYPLLVLHPTGVKKMGELHLAIRFS  726 (1005)
Q Consensus       677 ~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~G~i~l~~~~~  726 (1005)
                        +|++||.+.++|+++..+...+.|++|....  +.+..|+|++.++|+
T Consensus        75 --~~~~iG~~~~~l~~l~~~~~~~~~~~L~~~~--~~~~~G~l~l~~~~~  120 (121)
T cd04042          75 --TDDFMGSAFVDLSTLELNKPTEVKLKLEDPN--SDEDLGYISLVVTLT  120 (121)
T ss_pred             --CCcceEEEEEEHHHcCCCCCeEEEEECCCCC--CccCceEEEEEEEEC
Confidence              8999999999999999888888999997433  234579999999985

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein

>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.80  E-value=9.2e-19  Score=163.24  Aligned_cols=121  Identities=71%  Similarity=1.177  Sum_probs=107.2

Q ss_pred             EEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeeecCCCCCeeeeEEEEeecCCCCcEEEEEEEeCCCCCCceeEE
Q 045058          271 FLYVRVVKARELPAMDLTGSIDPFVEVKIGNYKGITKHYEKNQNPQWHQVFAFSRDRMQASVLEVVIKDKDLVKDDFVGI  350 (1005)
Q Consensus       271 ~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~~~~~kT~~~~~~~nP~wne~f~f~~~~~~~~~l~v~V~d~~~~~d~~lG~  350 (1005)
                      +|.|+|++|+||+..    .+||||++.++++..+|++++++.||+|||+|.|.+..+....|.|+|||++..++++||+
T Consensus         1 ~L~V~Vi~a~~L~~~----~~Dpyv~v~l~~~~~kT~v~~~t~nP~Wne~F~f~~~~~~~~~L~~~v~d~d~~~~~~lG~   76 (121)
T cd08378           1 YLYVRVVKARGLPAN----SNDPVVEVKLGNYKGSTKAIERTSNPEWNQVFAFSKDRLQGSTLEVSVWDKDKAKDDFLGG   76 (121)
T ss_pred             CEEEEEEEecCCCcc----cCCCEEEEEECCccccccccCCCCCCccceEEEEEcCCCcCCEEEEEEEeCCCCcCceeee
Confidence            378999999999877    6899999999999999999999999999999999988777789999999999558999999


Q ss_pred             EEEEceecCCCCCCCCCCCCeEEEeecCCCCccceEEEEEEEEec
Q 045058          351 VRFDINEVPLRVPPDSPLAPEWYRLEDKKGEKIKGELMLAVWIGT  395 (1005)
Q Consensus       351 ~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~G~i~l~~~~~~  395 (1005)
                      +.+++.++..+.+.++....+||+|....+.+..|+|.|++||++
T Consensus        77 ~~i~l~~l~~~~~~~~~~~~~W~~L~~~~~~~~~G~i~l~~~~~~  121 (121)
T cd08378          77 VCFDLSEVPTRVPPDSPLAPQWYRLEDKKGGRVGGELMLAVWFGT  121 (121)
T ss_pred             EEEEhHhCcCCCCCCCCCCcceEEccCCCCCccceEEEEEEEecC
Confidence            999999998765545556789999998876568899999999863

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate

>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.79  E-value=8.9e-19  Score=169.02  Aligned_cols=123  Identities=21%  Similarity=0.311  Sum_probs=103.7

Q ss_pred             EEEEEEEEecCCCCCCCCCCCCCCCcEEEEEECCEEEEeeeccC-CCCceeccEEEEEEeCC-CceEEEEEEeCCCcCCC
Q 045058          597 ILELGILNAVGLHPMKTRDGRGTSDTYCVAKYGHKWVRTRTLVD-NLSPKYNEQYTWEVFDP-ATVLTVGVFDNSQLGEK  674 (1005)
Q Consensus       597 ~l~v~i~~a~~L~~~~~~~~~~~~dpyv~~~~g~~~~~T~~~~~-t~nP~wne~f~~~v~~~-~~~l~i~v~d~~~~~~~  674 (1005)
                      .|+|+|++|+||++++   ..|.+||||++.+|++..+|+++.+ ++||+|||.|+|.+.++ .+.|.|+|+|++.++  
T Consensus         1 ~L~V~Vi~A~~L~~~d---~~g~sDPYV~v~l~~~~~kTk~~~~~t~nP~WNE~F~f~v~~~~~~~l~v~V~d~~~~~--   75 (150)
T cd04019           1 YLRVTVIEAQDLVPSD---KNRVPEVFVKAQLGNQVLRTRPSQTRNGNPSWNEELMFVAAEPFEDHLILSVEDRVGPN--   75 (150)
T ss_pred             CEEEEEEEeECCCCCC---CCCCCCeEEEEEECCEEeeeEeccCCCCCCcccCcEEEEecCccCCeEEEEEEEecCCC--
Confidence            3799999999999764   4689999999999999999999976 69999999999999876 468999999998765  


Q ss_pred             CCCCCCcccEEEEEEcccccCC----CEEeeeEeeeecCC-----CCCceeeEEEEEEEEeec
Q 045058          675 SNGNKDLKIGKVRIRISTLETG----RIYTHSYPLLVLHP-----TGVKKMGELHLAIRFSCT  728 (1005)
Q Consensus       675 ~~~~~d~~lG~~~i~l~~l~~~----~~~~~~~~L~~~~~-----~~~~~~G~i~l~~~~~~~  728 (1005)
                          +|++||++.|+|+++..+    .....||+|.....     +..+..|+|+|++.|...
T Consensus        76 ----~dd~lG~v~i~L~~l~~~~~~~~~~~~W~~L~~~~~~~~~~k~~k~~g~l~l~i~~~~~  134 (150)
T cd04019          76 ----KDEPLGRAVIPLNDIERRVDDRPVPSRWFSLERPGGAMEQKKKRKFASRIHLRLCLDGG  134 (150)
T ss_pred             ----CCCeEEEEEEEHHHCcccCCCCccCCceEECcCCCCcccccccCcccccEEEEEEecCc
Confidence                789999999999998653    45689999985542     223457999999999654

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates

>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3

Probab=99.79  E-value=1.2e-18  Score=162.55  Aligned_cols=119  Identities=26%  Similarity=0.412  Sum_probs=102.8

Q ss_pred             EEEEEEEecCCCCCCCCCCCCCCCcEEEEEECCE-EEEeeeccCCCCceeccEEEEEEeCCCceEEEEEEeCCCcCCCCC
Q 045058          598 LELGILNAVGLHPMKTRDGRGTSDTYCVAKYGHK-WVRTRTLVDNLSPKYNEQYTWEVFDPATVLTVGVFDNSQLGEKSN  676 (1005)
Q Consensus       598 l~v~i~~a~~L~~~~~~~~~~~~dpyv~~~~g~~-~~~T~~~~~t~nP~wne~f~~~v~~~~~~l~i~v~d~~~~~~~~~  676 (1005)
                      |+|.|++|+||++++  +..|.+||||++.++++ ..+|+++++|+||+|||+|.|++.+....|.|.|||++.++    
T Consensus         2 l~v~v~~a~~L~~~~--~~~g~sDpYv~v~l~~~~~~kT~v~~kt~~P~WnE~F~f~v~~~~~~l~~~v~d~~~~~----   75 (121)
T cd08401           2 LKIKIGEAKNLPPRS--GPNKMRDCYCTVNLDQEEVFRTKTVEKSLCPFFGEDFYFEIPRTFRHLSFYIYDRDVLR----   75 (121)
T ss_pred             eEEEEEEccCCCCCC--CCCCCcCcEEEEEECCccEEEeeEEECCCCCccCCeEEEEcCCCCCEEEEEEEECCCCC----
Confidence            689999999999864  23578999999999876 57999999999999999999999876679999999999776    


Q ss_pred             CCCCcccEEEEEEcccccCCCEEeeeEeeeecCCCCCceeeEEEEEEEE
Q 045058          677 GNKDLKIGKVRIRISTLETGRIYTHSYPLLVLHPTGVKKMGELHLAIRF  725 (1005)
Q Consensus       677 ~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~G~i~l~~~~  725 (1005)
                        +|++||++.++|+++..+...+.||+|......+. ..|+|+|+++|
T Consensus        76 --~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~-~~G~i~l~~~~  121 (121)
T cd08401          76 --RDSVIGKVAIKKEDLHKYYGKDTWFPLQPVDADSE-VQGKVHLELRL  121 (121)
T ss_pred             --CCceEEEEEEEHHHccCCCCcEeeEEEEccCCCCc-ccEEEEEEEEC
Confidence              89999999999999998887899999985544333 46999999875

RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p

>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins

Probab=99.78  E-value=1e-18  Score=160.62  Aligned_cols=107  Identities=24%  Similarity=0.363  Sum_probs=91.3

Q ss_pred             EEEEEEEEeecCCCCCCCCCCCcEEEEEECC-------eEeeccccCCCCCCceeeEEEEEeccCccccceEEEEEEEeC
Q 045058            5 KLGVQVVGAHNLLPKDGKGSSSAFVELYFDG-------QRFRTTIKENDLNPVWNESFYFNISDASKLHYLTLEAYIYNN   77 (1005)
Q Consensus         5 ~l~V~v~~a~~L~~~d~~g~~dpyv~v~~~~-------~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~   77 (1005)
                      +|+|+|++|+||+.++ .|.+||||+|++.+       ++++|+++.+|+||+|||+|.|.+...+......|.|.|||+
T Consensus         1 kL~V~Vi~A~~L~~~d-~g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V~D~   79 (120)
T cd08395           1 KVTVKVVAANDLKWQT-TGMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFILGNEDDPESYELHICVKDY   79 (120)
T ss_pred             CEEEEEEECcCCCccc-CCCCCCEEEEEEecCCCcccccEeeeEEecCCCCCccCcEEEEEeeCcCCCceeEEEEEEEEe
Confidence            5899999999999887 48999999999732       357899999999999999999999765445667899999998


Q ss_pred             CCCCCCCcccEEEEEeCCcccCCCCceeeeEecccCC
Q 045058           78 IGDTNSRSFLGKVCLTGNSFVPLSDSVVLHYPLEKRG  114 (1005)
Q Consensus        78 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~  114 (1005)
                      + ..++|++||++.+++.++...+. ...|++|+++.
T Consensus        80 d-~~~~dd~IG~~~l~l~~~~~~~~-~~~w~~L~~~~  114 (120)
T cd08395          80 C-FARDDRLVGVTVLQLRDIAQAGS-CACWLPLGRRI  114 (120)
T ss_pred             c-ccCCCCEEEEEEEEHHHCcCCCc-EEEEEECcCcc
Confidence            5 45679999999999999987765 46899998764

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi

>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.77  E-value=2.9e-18  Score=159.91  Aligned_cols=115  Identities=30%  Similarity=0.376  Sum_probs=98.7

Q ss_pred             EEEEEEEeecCCCCCCCCCCCcEEEEEECCeEeeccccCCCCCCceeeEEEEEeccCccccceEEEEEEEeCCCCCCCCc
Q 045058            6 LGVQVVGAHNLLPKDGKGSSSAFVELYFDGQRFRTTIKENDLNPVWNESFYFNISDASKLHYLTLEAYIYNNIGDTNSRS   85 (1005)
Q Consensus         6 l~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~~~~~d~   85 (1005)
                      |.|+|++|+||..+    .+||||+|++++++.+|++++++.||+|||+|.|.+...   ....|.|.|||++..  +++
T Consensus         2 L~V~Vi~a~~L~~~----~~Dpyv~v~l~~~~~kT~v~~~t~nP~Wne~F~f~~~~~---~~~~L~~~v~d~d~~--~~~   72 (121)
T cd08378           2 LYVRVVKARGLPAN----SNDPVVEVKLGNYKGSTKAIERTSNPEWNQVFAFSKDRL---QGSTLEVSVWDKDKA--KDD   72 (121)
T ss_pred             EEEEEEEecCCCcc----cCCCEEEEEECCccccccccCCCCCCccceEEEEEcCCC---cCCEEEEEEEeCCCC--cCc
Confidence            79999999999887    699999999999999999999999999999999998543   246899999999643  899


Q ss_pred             ccEEEEEeCCcccCCC----CceeeeEecccCCCcceeeeEEEEEEEEe
Q 045058           86 FLGKVCLTGNSFVPLS----DSVVLHYPLEKRGIFSHVRGELGLKVYIT  130 (1005)
Q Consensus        86 ~lG~~~i~l~~l~~~~----~~~~~w~~L~~~~~~~~~~G~i~l~~~~~  130 (1005)
                      +||++.++++++....    .....||+|.+... ++.+|+|+|+++|-
T Consensus        73 ~lG~~~i~l~~l~~~~~~~~~~~~~W~~L~~~~~-~~~~G~i~l~~~~~  120 (121)
T cd08378          73 FLGGVCFDLSEVPTRVPPDSPLAPQWYRLEDKKG-GRVGGELMLAVWFG  120 (121)
T ss_pred             eeeeEEEEhHhCcCCCCCCCCCCcceEEccCCCC-CccceEEEEEEEec
Confidence            9999999999986532    23357999998765 58899999999873

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate

>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1)

Probab=99.77  E-value=5.9e-18  Score=159.34  Aligned_cols=120  Identities=24%  Similarity=0.456  Sum_probs=101.4

Q ss_pred             ceEEEEEEEEecCCCCCCCCCCCCCCCcEEEEEECCEE-EEeeeccCCCCceeccEEEEEEeCCC-ceEEEEEEeCCCcC
Q 045058          595 IGILELGILNAVGLHPMKTRDGRGTSDTYCVAKYGHKW-VRTRTLVDNLSPKYNEQYTWEVFDPA-TVLTVGVFDNSQLG  672 (1005)
Q Consensus       595 ~g~l~v~i~~a~~L~~~~~~~~~~~~dpyv~~~~g~~~-~~T~~~~~t~nP~wne~f~~~v~~~~-~~l~i~v~d~~~~~  672 (1005)
                      ...|+|+|++|+||++      .+.+||||++.+++.. .||++ +++.||.|||.|.|++..+. ..++|.|||++..+
T Consensus         3 ~~~L~V~Vi~A~~L~~------~~~~DPYv~v~l~~~~~~kT~v-~~~~nP~WnE~f~f~~~~~~~~~l~v~v~d~~~~~   75 (126)
T cd08400           3 VRSLQLNVLEAHKLPV------KHVPHPYCVISLNEVKVARTKV-REGPNPVWSEEFVFDDLPPDVNSFTISLSNKAKRS   75 (126)
T ss_pred             eeEEEEEEEEeeCCCC------CCCCCeeEEEEECCEeEEEeec-CCCCCCccCCEEEEecCCCCcCEEEEEEEECCCCC
Confidence            3579999999999985      3468999999998854 68987 56899999999999976543 58999999998766


Q ss_pred             CCCCCCCCcccEEEEEEcccccCCCEEeeeEeeeecCCCCCceeeEEEEEEEEee
Q 045058          673 EKSNGNKDLKIGKVRIRISTLETGRIYTHSYPLLVLHPTGVKKMGELHLAIRFSC  727 (1005)
Q Consensus       673 ~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~G~i~l~~~~~~  727 (1005)
                            +|++||.+.|+|+++..+...+.||+|......+.+..|+|+|.++|..
T Consensus        76 ------~d~~iG~v~i~l~~l~~~~~~~~W~~L~~~~~~~~~~~G~i~l~l~~~~  124 (126)
T cd08400          76 ------KDSEIAEVTVQLSKLQNGQETDEWYPLSSASPLKGGEWGSLRIRARYSH  124 (126)
T ss_pred             ------CCCeEEEEEEEHhHccCCCcccEeEEcccCCCCCCCcCcEEEEEEEEEc
Confidence                  8999999999999999998889999998654434455799999999864

RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki

>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

Probab=99.77  E-value=5.7e-18  Score=158.86  Aligned_cols=119  Identities=22%  Similarity=0.398  Sum_probs=102.8

Q ss_pred             EEEEEEEEeecCCCCCCCCCCCcEEEEEECC-eEeeccccCCCCCCceeeEEEEEeccCccccceEEEEEEEeCCCCCCC
Q 045058            5 KLGVQVVGAHNLLPKDGKGSSSAFVELYFDG-QRFRTTIKENDLNPVWNESFYFNISDASKLHYLTLEAYIYNNIGDTNS   83 (1005)
Q Consensus         5 ~l~V~v~~a~~L~~~d~~g~~dpyv~v~~~~-~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~~~~~   83 (1005)
                      .|+|+|++|+||+.+|..|.+||||++++++ ..++|+++.+++||+|||+|.|.+.+..    ..|.|+|||++. .++
T Consensus         1 ~L~v~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~~----~~l~~~v~D~d~-~~~   75 (121)
T cd04042           1 QLDIHLKEGRNLAARDRGGTSDPYVKFKYGGKTVYKSKTIYKNLNPVWDEKFTLPIEDVT----QPLYIKVFDYDR-GLT   75 (121)
T ss_pred             CeEEEEEEeeCCCCcCCCCCCCCeEEEEECCEEEEEeeeccCCCCCccceeEEEEecCCC----CeEEEEEEeCCC-CCC
Confidence            4899999999999999999999999999988 5789999999999999999999986533    589999999954 458


Q ss_pred             CcccEEEEEeCCcccCCCCceeeeEecccCCCcceeeeEEEEEEEEe
Q 045058           84 RSFLGKVCLTGNSFVPLSDSVVLHYPLEKRGIFSHVRGELGLKVYIT  130 (1005)
Q Consensus        84 d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~~  130 (1005)
                      |++||++.+++.++..... .+.|++|.+++. .+..|+|++.+.+.
T Consensus        76 ~~~iG~~~~~l~~l~~~~~-~~~~~~L~~~~~-~~~~G~l~l~~~~~  120 (121)
T cd04042          76 DDFMGSAFVDLSTLELNKP-TEVKLKLEDPNS-DEDLGYISLVVTLT  120 (121)
T ss_pred             CcceEEEEEEHHHcCCCCC-eEEEEECCCCCC-ccCceEEEEEEEEC
Confidence            9999999999999886554 357999987654 25789999999875

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein

>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3

Probab=99.77  E-value=4e-18  Score=158.96  Aligned_cols=117  Identities=26%  Similarity=0.431  Sum_probs=99.7

Q ss_pred             EEEEEEEeecCCCCC-CCCCCCcEEEEEECCe-EeeccccCCCCCCceeeEEEEEeccCccccceEEEEEEEeCCCCCCC
Q 045058            6 LGVQVVGAHNLLPKD-GKGSSSAFVELYFDGQ-RFRTTIKENDLNPVWNESFYFNISDASKLHYLTLEAYIYNNIGDTNS   83 (1005)
Q Consensus         6 l~V~v~~a~~L~~~d-~~g~~dpyv~v~~~~~-~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~~~~~   83 (1005)
                      |.|+|++|+||+.++ ..|.+||||.|+++++ .++|+++++|+||+|||+|.|.+.+..    ..|.|.|||++. .++
T Consensus         2 l~v~v~~a~~L~~~~~~~g~sDpYv~v~l~~~~~~kT~v~~kt~~P~WnE~F~f~v~~~~----~~l~~~v~d~~~-~~~   76 (121)
T cd08401           2 LKIKIGEAKNLPPRSGPNKMRDCYCTVNLDQEEVFRTKTVEKSLCPFFGEDFYFEIPRTF----RHLSFYIYDRDV-LRR   76 (121)
T ss_pred             eEEEEEEccCCCCCCCCCCCcCcEEEEEECCccEEEeeEEECCCCCccCCeEEEEcCCCC----CEEEEEEEECCC-CCC
Confidence            789999999999874 4678999999999876 689999999999999999999997532    489999999965 468


Q ss_pred             CcccEEEEEeCCcccCCCCceeeeEecccCCCcceeeeEEEEEEE
Q 045058           84 RSFLGKVCLTGNSFVPLSDSVVLHYPLEKRGIFSHVRGELGLKVY  128 (1005)
Q Consensus        84 d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~  128 (1005)
                      |++||++.++++++...+. .+.||+|++....++.+|+|++++.
T Consensus        77 ~~~iG~~~i~l~~l~~~~~-~~~w~~L~~~~~~~~~~G~i~l~~~  120 (121)
T cd08401          77 DSVIGKVAIKKEDLHKYYG-KDTWFPLQPVDADSEVQGKVHLELR  120 (121)
T ss_pred             CceEEEEEEEHHHccCCCC-cEeeEEEEccCCCCcccEEEEEEEE
Confidence            9999999999999876544 4689999987555567999999875

RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p

>cd08375 C2_Intersectin C2 domain present in Intersectin

Probab=99.77  E-value=7.8e-18  Score=160.08  Aligned_cols=119  Identities=28%  Similarity=0.437  Sum_probs=101.4

Q ss_pred             CCcceEEEEEEEEecCCCCCCCCCCCCCCCcEEEEEECCEEEEeeeccCCCCceeccEEEEEEeCC-CceEEEEEEeCCC
Q 045058          592 RPSIGILELGILNAVGLHPMKTRDGRGTSDTYCVAKYGHKWVRTRTLVDNLSPKYNEQYTWEVFDP-ATVLTVGVFDNSQ  670 (1005)
Q Consensus       592 ~~~~g~l~v~i~~a~~L~~~~~~~~~~~~dpyv~~~~g~~~~~T~~~~~t~nP~wne~f~~~v~~~-~~~l~i~v~d~~~  670 (1005)
                      ...+|.|+|+|++|+||++++   ..|.+||||++.+++..++|+++++++||.|||.|.|.+.++ ...|.|+|||++.
T Consensus        11 ~~~~G~L~V~Vi~A~~L~~~d---~~g~~DPYv~v~~~~~~~kT~vi~~t~nP~Wne~f~f~v~~~~~~~l~i~V~D~d~   87 (136)
T cd08375          11 ASGIGRLMVVIVEGRDLKPCN---SNGKSDPYCEVSMGSQEHKTKVVSDTLNPKWNSSMQFFVKDLEQDVLCITVFDRDF   87 (136)
T ss_pred             CCCcEEEEEEEEEeeCCCCCC---CCCCcCcEEEEEECCEeeeccccCCCCCCccCceEEEEecCccCCEEEEEEEECCC
Confidence            357899999999999999754   578899999999999999999999999999999999999875 5789999999997


Q ss_pred             cCCCCCCCCCcccEEEEEEcccccC-----CCEEeeeEeeeecCCCCCceeeEEEEEEEE
Q 045058          671 LGEKSNGNKDLKIGKVRIRISTLET-----GRIYTHSYPLLVLHPTGVKKMGELHLAIRF  725 (1005)
Q Consensus       671 ~~~~~~~~~d~~lG~~~i~l~~l~~-----~~~~~~~~~L~~~~~~~~~~~G~i~l~~~~  725 (1005)
                      ++      +|++||++.|+|+++..     ......|.++.     + +..|+|+|+++|
T Consensus        88 ~~------~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~-----~-~~~g~i~l~~~~  135 (136)
T cd08375          88 FS------PDDFLGRTEIRVADILKETKESKGPITKRLLLH-----E-VPTGEVVVKLDL  135 (136)
T ss_pred             CC------CCCeeEEEEEEHHHhccccccCCCcEEEEeccc-----c-ccceeEEEEEEe
Confidence            66      88999999999999886     23344555552     3 345999999987

A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro

>KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]

Probab=99.76  E-value=2e-18  Score=160.98  Aligned_cols=118  Identities=26%  Similarity=0.409  Sum_probs=97.5

Q ss_pred             CCCcEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEeeccccCCCCCCceeeEEEEEeccCccccceEEEEEEEeCCCC
Q 045058            1 MRNLKLGVQVVGAHNLLPKDGKGSSSAFVELYFDGQRFRTTIKENDLNPVWNESFYFNISDASKLHYLTLEAYIYNNIGD   80 (1005)
Q Consensus         1 m~~~~l~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~~   80 (1005)
                      |.-|.|+|+|++|.||..+|..+++||||++.+++++.||+++++++||+|||.|.|.+.++.    ..|.++|||+| .
T Consensus         3 ~~vGLL~v~v~~g~~L~~rD~~~sSDPyVVl~lg~q~lkT~~v~~n~NPeWNe~ltf~v~d~~----~~lkv~VyD~D-~   77 (168)
T KOG1030|consen    3 MLVGLLRVRVKRGKNLAIRDFLGSSDPYVVLELGNQKLKTRVVYKNLNPEWNEELTFTVKDPN----TPLKVTVYDKD-T   77 (168)
T ss_pred             ccceEEEEEEEeecCeeeeccccCCCCeEEEEECCeeeeeeeecCCCCCcccceEEEEecCCC----ceEEEEEEeCC-C
Confidence            344899999999999999998899999999999999999999999999999999999998877    59999999995 5


Q ss_pred             CCCCcccEEEEEeCCcccCCCCceeeeEecccCCCcceeeeEEEEEE
Q 045058           81 TNSRSFLGKVCLTGNSFVPLSDSVVLHYPLEKRGIFSHVRGELGLKV  127 (1005)
Q Consensus        81 ~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~  127 (1005)
                      ++.|||||++.|+|..+.....   .|+ |......+...|++.++.
T Consensus        78 fs~dD~mG~A~I~l~p~~~~~~---~~~-l~~~~~~gt~~~~v~~s~  120 (168)
T KOG1030|consen   78 FSSDDFMGEATIPLKPLLEAQK---MDY-LKLELLTGTAIGKVLLSR  120 (168)
T ss_pred             CCcccccceeeeccHHHHHHhh---hhc-cccccCCCcEeeEEEecc
Confidence            6799999999999998865443   245 443322224456555543

>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins

Probab=99.76  E-value=6.3e-18  Score=158.06  Aligned_cols=117  Identities=20%  Similarity=0.282  Sum_probs=99.3

Q ss_pred             cEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEeeccccC-CCCCCceeeEEEEEeccCccccceEEEEEEEeCCCCCC
Q 045058            4 LKLGVQVVGAHNLLPKDGKGSSSAFVELYFDGQRFRTTIKE-NDLNPVWNESFYFNISDASKLHYLTLEAYIYNNIGDTN   82 (1005)
Q Consensus         4 ~~l~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~T~v~~-~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~~~~   82 (1005)
                      |.|+|+|++|+||+.++..|.+||||+|++++++++|+++. +++||+|||+|.|.+....   ...|.|+|||++. . 
T Consensus         1 g~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~~~~~~~~nP~Wne~f~f~v~~~~---~~~l~i~v~d~~~-~-   75 (118)
T cd08681           1 GTLVVVVLKARNLPNKRKLDKQDPYCVLRIGGVTKKTKTDFRGGQHPEWDEELRFEITEDK---KPILKVAVFDDDK-R-   75 (118)
T ss_pred             CEEEEEEEEccCCCCCCcCCCCCceEEEEECCCccccccccCCCCCCccCceEEEEecCCC---CCEEEEEEEeCCC-C-
Confidence            57999999999999999999999999999999999999875 5799999999999996532   3589999999854 3 


Q ss_pred             CCcccEEEEEeCCcccCCCCceeeeEecccCCCcceeeeEEEEEEEE
Q 045058           83 SRSFLGKVCLTGNSFVPLSDSVVLHYPLEKRGIFSHVRGELGLKVYI  129 (1005)
Q Consensus        83 ~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~  129 (1005)
                      +|++||++.+++.++..... ...|++|.+.+   +..|+|++++.|
T Consensus        76 ~~~~iG~~~~~l~~~~~~~~-~~~w~~L~~~~---~~~G~i~l~l~f  118 (118)
T cd08681          76 KPDLIGDTEVDLSPALKEGE-FDDWYELTLKG---RYAGEVYLELTF  118 (118)
T ss_pred             CCcceEEEEEecHHHhhcCC-CCCcEEeccCC---cEeeEEEEEEEC
Confidence            49999999999999865443 35799998654   578999999864

Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr

>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins

Probab=99.76  E-value=5.4e-18  Score=158.49  Aligned_cols=116  Identities=27%  Similarity=0.443  Sum_probs=99.8

Q ss_pred             eEEEEEEEEecCCCCCCCCCCCCCCCcEEEEEECCEEEEeeeccC-CCCceeccEEEEEEeCC-CceEEEEEEeCCCcCC
Q 045058          596 GILELGILNAVGLHPMKTRDGRGTSDTYCVAKYGHKWVRTRTLVD-NLSPKYNEQYTWEVFDP-ATVLTVGVFDNSQLGE  673 (1005)
Q Consensus       596 g~l~v~i~~a~~L~~~~~~~~~~~~dpyv~~~~g~~~~~T~~~~~-t~nP~wne~f~~~v~~~-~~~l~i~v~d~~~~~~  673 (1005)
                      |.|+|+|++|+||+..   +..+.+||||++.+++...+|+++.+ ++||+|||.|.|.+..+ ...|.|+|||++..  
T Consensus         1 g~L~V~v~~A~~L~~~---~~~~~~dpyv~v~~~~~~~kT~~~~~~~~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~--   75 (118)
T cd08681           1 GTLVVVVLKARNLPNK---RKLDKQDPYCVLRIGGVTKKTKTDFRGGQHPEWDEELRFEITEDKKPILKVAVFDDDKR--   75 (118)
T ss_pred             CEEEEEEEEccCCCCC---CcCCCCCceEEEEECCCccccccccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCCC--
Confidence            7899999999999965   45788999999999998899999865 79999999999999874 67899999999752  


Q ss_pred             CCCCCCCcccEEEEEEcccccCCCEEeeeEeeeecCCCCCceeeEEEEEEEE
Q 045058          674 KSNGNKDLKIGKVRIRISTLETGRIYTHSYPLLVLHPTGVKKMGELHLAIRF  725 (1005)
Q Consensus       674 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~G~i~l~~~~  725 (1005)
                           .|++||++.++++++..+.....||+|..   ++ +..|+|+|+++|
T Consensus        76 -----~~~~iG~~~~~l~~~~~~~~~~~w~~L~~---~~-~~~G~i~l~l~f  118 (118)
T cd08681          76 -----KPDLIGDTEVDLSPALKEGEFDDWYELTL---KG-RYAGEVYLELTF  118 (118)
T ss_pred             -----CCcceEEEEEecHHHhhcCCCCCcEEecc---CC-cEeeEEEEEEEC
Confidence                 38999999999999877766789999963   22 356999999976

Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr

>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3)

Probab=99.76  E-value=5.3e-18  Score=162.41  Aligned_cols=109  Identities=23%  Similarity=0.332  Sum_probs=89.9

Q ss_pred             EEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eEeeccccCCCCCCceeeEEEEEecc------------Cccccc
Q 045058            5 KLGVQVVGAHNLLPKDGKGSSSAFVELYFDG-----QRFRTTIKENDLNPVWNESFYFNISD------------ASKLHY   67 (1005)
Q Consensus         5 ~l~V~v~~a~~L~~~d~~g~~dpyv~v~~~~-----~~~~T~v~~~t~nP~Wne~f~f~v~~------------~~~~~~   67 (1005)
                      +|.|+|++|+||..  .+|.+||||+|++.+     ++++|+++++|+||+|||+|.|.+..            .+....
T Consensus         1 kL~V~Vi~ArnL~~--~~g~sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~~   78 (148)
T cd04010           1 KLSVRVIECSDLAL--KNGTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAEK   78 (148)
T ss_pred             CEEEEEEeCcCCCC--CCCCCCceEEEEEeCCcccCcccCCccEeCCCCCccceEEEEEEecccccccccccCCcccccE
Confidence            48999999999988  568999999999976     57899999999999999999999851            122344


Q ss_pred             eEEEEEEEeCCCCCCCCcccEEEEEeCCcccCCCCceeeeEecccCCCc
Q 045058           68 LTLEAYIYNNIGDTNSRSFLGKVCLTGNSFVPLSDSVVLHYPLEKRGIF  116 (1005)
Q Consensus        68 ~~l~v~V~d~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~  116 (1005)
                      ..|.|.|||++. .++|+|||++.|++.++.........||+|++++..
T Consensus        79 ~~L~i~V~d~~~-~~~ddfLG~v~i~l~~l~~~~~~~~~W~~L~~~~~~  126 (148)
T cd04010          79 LELRVDLWHASM-GGGDVFLGEVRIPLRGLDLQAGSHQAWYFLQPREEK  126 (148)
T ss_pred             EEEEEEEEcCCC-CCCCceeEEEEEecccccccCCcCcceeecCCcccc
Confidence            689999999964 468999999999999987762233579999887543

RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain

>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein

Probab=99.75  E-value=1.3e-17  Score=157.42  Aligned_cols=119  Identities=20%  Similarity=0.313  Sum_probs=101.9

Q ss_pred             EEEEEEEecCCCCCCCCCCCCCCCcEEEEEECC--EEEEeeeccCCCCceeccEEEEEEeCCCceEEEEEEeCCCcCCCC
Q 045058          598 LELGILNAVGLHPMKTRDGRGTSDTYCVAKYGH--KWVRTRTLVDNLSPKYNEQYTWEVFDPATVLTVGVFDNSQLGEKS  675 (1005)
Q Consensus       598 l~v~i~~a~~L~~~~~~~~~~~~dpyv~~~~g~--~~~~T~~~~~t~nP~wne~f~~~v~~~~~~l~i~v~d~~~~~~~~  675 (1005)
                      |.|+|++|+||+.     ..|.+||||++.+++  +.+||+++.+++||+|||.|.|.+......|.|+|||++..+   
T Consensus         1 l~v~v~~A~~L~~-----~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~~~v~d~~~~~---   72 (126)
T cd08678           1 LLVKNIKANGLSE-----AAGSSNPYCVLEMDEPPQKYQSSTQKNTSNPFWDEHFLFELSPNSKELLFEVYDNGKKS---   72 (126)
T ss_pred             CEEEEEEecCCCC-----CCCCcCCEEEEEECCCCcEEEeEEEecCCCCccCceEEEEeCCCCCEEEEEEEECCCCC---
Confidence            5799999999985     368899999999974  568999999999999999999999766778999999998765   


Q ss_pred             CCCCCcccEEEEEEcccccCCCEEeeeEeeeecCCCCCceeeEEEEEEEEee
Q 045058          676 NGNKDLKIGKVRIRISTLETGRIYTHSYPLLVLHPTGVKKMGELHLAIRFSC  727 (1005)
Q Consensus       676 ~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~G~i~l~~~~~~  727 (1005)
                         +|++||++.++|+++..+.....||+|......+....|+|++++.|..
T Consensus        73 ---~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~G~l~l~~~~~~  121 (126)
T cd08678          73 ---DSKFLGLAIVPFDELRKNPSGRQIFPLQGRPYEGDSVSGSITVEFLFME  121 (126)
T ss_pred             ---CCceEEEEEEeHHHhccCCceeEEEEecCCCCCCCCcceEEEEEEEEec
Confidence               7999999999999999887778999997443333445799999999853

The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a

>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins

Probab=99.75  E-value=1.3e-17  Score=157.50  Aligned_cols=117  Identities=31%  Similarity=0.504  Sum_probs=101.1

Q ss_pred             cEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEeeccccCCCCCCceeeEEEEEeccCccccceEEEEEEEeCCCC---
Q 045058            4 LKLGVQVVGAHNLLPKDGKGSSSAFVELYFDGQRFRTTIKENDLNPVWNESFYFNISDASKLHYLTLEAYIYNNIGD---   80 (1005)
Q Consensus         4 ~~l~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~~---   80 (1005)
                      ++|+|+|++|++|+.+|..|.+||||+|++++.+++|+++++++||+|||+|.|.+..+.    ..|.|+|||++..   
T Consensus         1 ~~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~~v~~t~~P~Wne~f~f~~~~~~----~~l~i~v~d~d~~~~~   76 (127)
T cd04027           1 AKISITVVCAQGLIAKDKTGTSDPYVTVQVGKTKKRTKTIPQNLNPVWNEKFHFECHNSS----DRIKVRVWDEDDDIKS   76 (127)
T ss_pred             CeEEEEEEECcCCcCCCCCCCcCcEEEEEECCEeeecceecCCCCCccceEEEEEecCCC----CEEEEEEEECCCCccc
Confidence            479999999999999999999999999999988999999999999999999999985443    4799999998642   


Q ss_pred             -------CCCCcccEEEEEeCCcccCCCCceeeeEecccCCCcceeeeEEEEEE
Q 045058           81 -------TNSRSFLGKVCLTGNSFVPLSDSVVLHYPLEKRGIFSHVRGELGLKV  127 (1005)
Q Consensus        81 -------~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~  127 (1005)
                             .+.+++||++.+++.++...   ...||+|.+++..+.++|+|.+++
T Consensus        77 ~~~~~~~~~~~~~iG~~~i~l~~~~~~---~~~w~~L~~~~~~~~~~G~i~~~~  127 (127)
T cd04027          77 RLKQKFTRESDDFLGQTIIEVRTLSGE---MDVWYNLEKRTDKSAVSGAIRLHI  127 (127)
T ss_pred             ccceeccccCCCcceEEEEEhHHccCC---CCeEEECccCCCCCcEeEEEEEEC
Confidence                   14699999999999887422   347999999887778999999874

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev

>cd04046 C2_Calpain C2 domain present in Calpain proteins

Probab=99.75  E-value=2.1e-17  Score=155.88  Aligned_cols=122  Identities=22%  Similarity=0.386  Sum_probs=103.2

Q ss_pred             CCcEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEeeccccCCCCCCceeeEEEEEeccCccccceEEEEEEEeCCCCC
Q 045058            2 RNLKLGVQVVGAHNLLPKDGKGSSSAFVELYFDGQRFRTTIKENDLNPVWNESFYFNISDASKLHYLTLEAYIYNNIGDT   81 (1005)
Q Consensus         2 ~~~~l~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~~~   81 (1005)
                      +...|+|+|++|++|...+..|.+||||++.+++++++|++++++.||+|||.|.|.+.+.+    ..|.|+|||++. .
T Consensus         1 ~~~~~~V~v~~A~~L~~~d~~g~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~----~~l~i~V~d~~~-~   75 (126)
T cd04046           1 PQVVTQVHVHSAEGLSKQDSGGGADPYVIIKCEGESVRSPVQKDTLSPEFDTQAIFYRKKPR----SPIKIQVWNSNL-L   75 (126)
T ss_pred             CcEEEEEEEEeCcCCCCCCCCCCcCccEEEEECCEEEEeCccCCCCCCcccceEEEEecCCC----CEEEEEEEECCC-C
Confidence            35689999999999999998999999999999999999999999999999999999986543    589999999854 3


Q ss_pred             CCCcccEEEEEeCCcccCCCCceeeeEecccC--CCcceeeeEEEEEEEEecC
Q 045058           82 NSRSFLGKVCLTGNSFVPLSDSVVLHYPLEKR--GIFSHVRGELGLKVYITDD  132 (1005)
Q Consensus        82 ~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~--~~~~~~~G~i~l~~~~~~~  132 (1005)
                       +|++||++.+++.++..   ....|++|.++  ...+++.|+|.+++.+.++
T Consensus        76 -~d~~lG~~~~~l~~~~~---~~~~~~~l~~~~~~~~~~~~G~i~~~~~~~~~  124 (126)
T cd04046          76 -CDEFLGQATLSADPNDS---QTLRTLPLRKRGRDAAGEVPGTISVKVTSSDD  124 (126)
T ss_pred             -CCCceEEEEEecccCCC---cCceEEEcccCCCCCCCCCCCEEEEEEEEccc
Confidence             58999999999987532   22368888644  3456789999999988774

A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic

>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

Probab=99.75  E-value=1.9e-17  Score=155.22  Aligned_cols=118  Identities=28%  Similarity=0.474  Sum_probs=102.8

Q ss_pred             eEEEEEEEEecCCCCCCCCCCCCCCCcEEEEEECCEEEEeeeccCCCCceeccEEEEEEeCCCceEEEEEEeCCCcCCCC
Q 045058          596 GILELGILNAVGLHPMKTRDGRGTSDTYCVAKYGHKWVRTRTLVDNLSPKYNEQYTWEVFDPATVLTVGVFDNSQLGEKS  675 (1005)
Q Consensus       596 g~l~v~i~~a~~L~~~~~~~~~~~~dpyv~~~~g~~~~~T~~~~~t~nP~wne~f~~~v~~~~~~l~i~v~d~~~~~~~~  675 (1005)
                      |.|+|+|++|+||+.+   +..+.+||||++.+++..++|++++++.||.|||+|.|++.+....|.|+|||++..+   
T Consensus         1 g~l~v~v~~a~~L~~~---~~~~~~dPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~~~~~~~~~~l~~~v~d~~~~~---   74 (119)
T cd08377           1 GFLQVKVIRASGLAAA---DIGGKSDPFCVLELVNARLQTHTIYKTLNPEWNKIFTFPIKDIHDVLEVTVYDEDKDK---   74 (119)
T ss_pred             CEEEEEEEeeeCCCCC---CCCCCCCcEEEEEECCEeeecceecCCcCCccCcEEEEEecCcCCEEEEEEEECCCCC---
Confidence            7899999999999965   4467899999999999889999999999999999999999877789999999998765   


Q ss_pred             CCCCCcccEEEEEEcccccCCCEEeeeEeeeecCCCCCceeeEEEEEEEE
Q 045058          676 NGNKDLKIGKVRIRISTLETGRIYTHSYPLLVLHPTGVKKMGELHLAIRF  725 (1005)
Q Consensus       676 ~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~G~i~l~~~~  725 (1005)
                         ++++||++.++|.++..+.  ..||+|......+ +..|+|.++++|
T Consensus        75 ---~~~~iG~~~~~l~~~~~~~--~~~~~l~~~~~~~-~~~G~i~l~~~~  118 (119)
T cd08377          75 ---KPEFLGKVAIPLLSIKNGE--RKWYALKDKKLRT-RAKGSILLEMDV  118 (119)
T ss_pred             ---CCceeeEEEEEHHHCCCCC--ceEEECcccCCCC-ceeeEEEEEEEe
Confidence               7899999999999998776  6899997544333 346999999986

MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran

>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42)

Probab=99.75  E-value=9.9e-18  Score=160.41  Aligned_cols=120  Identities=27%  Similarity=0.395  Sum_probs=102.2

Q ss_pred             EEEEEEEEeecCCCCCCCCCCCcEEEEEECCe-------EeeccccCCCCCCceeeEEEEEeccCccccceEEEEEEEeC
Q 045058            5 KLGVQVVGAHNLLPKDGKGSSSAFVELYFDGQ-------RFRTTIKENDLNPVWNESFYFNISDASKLHYLTLEAYIYNN   77 (1005)
Q Consensus         5 ~l~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~-------~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~   77 (1005)
                      .|+|+|++|+||..++..|.+||||+|++.+.       +++|+++++++||+|||+|.|.+....    ..|.|+|||+
T Consensus         1 ~L~v~Vi~a~~L~~~d~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~----~~l~~~v~d~   76 (133)
T cd04033           1 ILRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFRVNPRE----HRLLFEVFDE   76 (133)
T ss_pred             CEEEEEEEeECCCcccCCCCcCcEEEEEEECCCCCCcccceeeeEEcCCCCCcEeeEEEEEEcCCC----CEEEEEEEEC
Confidence            38999999999999998899999999999764       579999999999999999999986433    4799999999


Q ss_pred             CCCCCCCcccEEEEEeCCcccCCCC-----ceeeeEecccCCCcceeeeEEEEEEEE
Q 045058           78 IGDTNSRSFLGKVCLTGNSFVPLSD-----SVVLHYPLEKRGIFSHVRGELGLKVYI  129 (1005)
Q Consensus        78 ~~~~~~d~~lG~~~i~l~~l~~~~~-----~~~~w~~L~~~~~~~~~~G~i~l~~~~  129 (1005)
                      +. .++|++||++.+++.++.....     ....||+|+++...++.+|+|++++.|
T Consensus        77 ~~-~~~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~G~l~~~~~~  132 (133)
T cd04033          77 NR-LTRDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRPRSSKSRVKGHLRLYMAY  132 (133)
T ss_pred             CC-CCCCCeeEEEEEEHHHCCCcCccccccccchheeeeecCCCCcceeEEEEEEee
Confidence            54 5689999999999999875432     245799999876666789999999976

Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

Probab=99.75  E-value=2.3e-17  Score=154.58  Aligned_cols=118  Identities=29%  Similarity=0.390  Sum_probs=103.2

Q ss_pred             cEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEeeccccCCCCCCceeeEEEEEeccCccccceEEEEEEEeCCCCCCC
Q 045058            4 LKLGVQVVGAHNLLPKDGKGSSSAFVELYFDGQRFRTTIKENDLNPVWNESFYFNISDASKLHYLTLEAYIYNNIGDTNS   83 (1005)
Q Consensus         4 ~~l~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~~~~~   83 (1005)
                      |.|.|+|++|+||+.++..+.+||||+|++++..++|++++++.||.|||+|.|.+.+..    ..|.|+|||++ ..++
T Consensus         1 g~l~v~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~~~~~~~~----~~l~~~v~d~~-~~~~   75 (119)
T cd08377           1 GFLQVKVIRASGLAAADIGGKSDPFCVLELVNARLQTHTIYKTLNPEWNKIFTFPIKDIH----DVLEVTVYDED-KDKK   75 (119)
T ss_pred             CEEEEEEEeeeCCCCCCCCCCCCcEEEEEECCEeeecceecCCcCCccCcEEEEEecCcC----CEEEEEEEECC-CCCC
Confidence            579999999999999998899999999999999999999999999999999999986432    58999999985 4458


Q ss_pred             CcccEEEEEeCCcccCCCCceeeeEecccCCCcceeeeEEEEEEEE
Q 045058           84 RSFLGKVCLTGNSFVPLSDSVVLHYPLEKRGIFSHVRGELGLKVYI  129 (1005)
Q Consensus        84 d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~  129 (1005)
                      +++||++.+++.++....   ..||+|.++....+.+|+|.+++.+
T Consensus        76 ~~~iG~~~~~l~~~~~~~---~~~~~l~~~~~~~~~~G~i~l~~~~  118 (119)
T cd08377          76 PEFLGKVAIPLLSIKNGE---RKWYALKDKKLRTRAKGSILLEMDV  118 (119)
T ss_pred             CceeeEEEEEHHHCCCCC---ceEEECcccCCCCceeeEEEEEEEe
Confidence            999999999999886433   3699999876666789999999875

MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran

>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4

Probab=99.75  E-value=1.5e-17  Score=155.63  Aligned_cols=118  Identities=25%  Similarity=0.347  Sum_probs=100.6

Q ss_pred             EEEEEEEeecCCCCCCCCCCCcEEEEEECCe-EeeccccCCCCCCceeeEEEEEeccCccccceEEEEEEEeCCCCCCCC
Q 045058            6 LGVQVVGAHNLLPKDGKGSSSAFVELYFDGQ-RFRTTIKENDLNPVWNESFYFNISDASKLHYLTLEAYIYNNIGDTNSR   84 (1005)
Q Consensus         6 l~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~-~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~~~~~d   84 (1005)
                      |.|+|++|++|..++..|.+||||+|.+++. ..||+++++++||+|||.|.|.+....    ..|.|.|||++. .+.|
T Consensus         2 l~v~vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~~~----~~l~v~v~d~~~-~~~d   76 (121)
T cd04054           2 LYIRIVEGKNLPAKDITGSSDPYCIVKVDNEVIIRTATVWKTLNPFWGEEYTVHLPPGF----HTVSFYVLDEDT-LSRD   76 (121)
T ss_pred             EEEEEEEeeCCcCCCCCCCCCceEEEEECCEeeeeeeeEcCCCCCcccceEEEeeCCCC----CEEEEEEEECCC-CCCC
Confidence            7899999999999999999999999999876 479999999999999999999986533    489999999954 4689


Q ss_pred             cccEEEEEeCCcccCCCCceeeeEecccCCCcceeeeEEEEEEE
Q 045058           85 SFLGKVCLTGNSFVPLSDSVVLHYPLEKRGIFSHVRGELGLKVY  128 (1005)
Q Consensus        85 ~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~  128 (1005)
                      ++||++.+++.++...+...+.|++|++........|+|++.+.
T Consensus        77 ~~iG~~~~~~~~~~~~~~~~~~W~~L~~~~~~~~~~G~i~l~~~  120 (121)
T cd04054          77 DVIGKVSLTREVISAHPRGIDGWMNLTEVDPDEEVQGEIHLELS  120 (121)
T ss_pred             CEEEEEEEcHHHhccCCCCCCcEEECeeeCCCCccccEEEEEEE
Confidence            99999999998886544445689999876544567899999874

Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.

>PF04842 DUF639: Plant protein of unknown function (DUF639); InterPro: IPR006927 The sequences in this family are plant proteins of unknown function

Probab=99.75  E-value=1.3e-17  Score=187.24  Aligned_cols=178  Identities=19%  Similarity=0.278  Sum_probs=150.0

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHhhcccccCCchhHHHHHHHHHHHHhcccc--hHHHHHHHHHHHhhhcccc-CCCCCC
Q 045058          797 RRSKANFFRLMTVFSGLFAVGKWFADICMWKNPITTVLVHVLYLMLACFPEL--ILPTVFLYMFLIGIWNYRY-RPRYPP  873 (1005)
Q Consensus       797 ~~~k~n~~rl~~~~~~~~~~~~~~~~l~~W~~p~~t~~~~~~~~~~~~~~~l--~~p~~~l~~~~~~~~~~~~-~~~~~~  873 (1005)
                      ..+-+|+..+++++.|+..+..+++.+.+|++|.+|+.|++++.+++|..|+  ++|.++++++++|+|.... +.    
T Consensus       483 eGI~tNvav~kELL~Pl~~i~~~~~~l~~We~P~kt~~Fl~~~~~iI~r~wl~Y~~p~~Ll~~a~~Ml~~r~~~~~----  558 (683)
T PF04842_consen  483 EGIDTNVAVMKELLFPLIEIAKWLQKLASWEEPLKTLVFLALFLYIIYRGWLGYIFPAFLLFSAVFMLWLRYQGRL----  558 (683)
T ss_pred             cCCccHHHHHHhccccHHHHHHHHHHHhhccCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc----
Confidence            4456799999999999999999999999999999999999999999999888  6999999999999984332 11    


Q ss_pred             CCCcccccccCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHhhhhhHHHHHHHHHhHHHHHhhccccCCchhHHHHHHHH
Q 045058          874 HMNIKISQAEAVHPDELDEEFDTFPTSRSPELVRMRYDRLRSVAGRIQTVVGDVATQGERLQALISWRDPRATAIFITFC  953 (1005)
Q Consensus       874 ~~~~~~s~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~vQ~~l~~~a~~~e~~~~l~~w~~p~~t~~~~~~~  953 (1005)
                                    +..-+++...+++..+  ..+++-++|+.+.++++.|++++.++.|+|+++.|..|++|..+++++
T Consensus       559 --------------g~~~~~v~V~~pP~~n--TvEqilalQ~Ais~~E~~iQ~~NI~LLKiRsllls~~PqaT~~Va~~L  622 (683)
T PF04842_consen  559 --------------GKSFGEVTVRDPPPKN--TVEQILALQEAISQLEEYIQAANIVLLKIRSLLLSKFPQATNKVALAL  622 (683)
T ss_pred             --------------CCccceEEecCCCCcc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence                          2223333333333333  449999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhcCCccCCCCCC----------chhhhhhcCCC
Q 045058          954 LVAALVLFLTPFQVIAALAGFWVMRHPRFRRRLPS----------VPINFFRRLPA  999 (1005)
Q Consensus       954 ~~~~~v~~~iP~r~i~l~~g~~~~~~P~f~~~~~~----------~~~~~~~r~p~  999 (1005)
                      +++++++.++|+||++++..+.     .|++.+|.          ++..|+-++|-
T Consensus       623 l~~A~~LavvP~kyil~~v~l~-----~FTre~~~Rr~s~er~~RRlrEWW~sIPA  673 (683)
T PF04842_consen  623 LGLAAVLAVVPFKYILLFVFLE-----VFTRESPFRRESSERFNRRLREWWDSIPA  673 (683)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-----HHhccCCCchhhHHHHHHHHHHHHhhCCc
Confidence            9999999999999999999998     66665553          36777777874

>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

Probab=99.75  E-value=2.1e-17  Score=154.03  Aligned_cols=114  Identities=25%  Similarity=0.435  Sum_probs=101.3

Q ss_pred             EEEEEEEEecCCCCCCCCCCCCCCCcEEEEEECCEEEEeeeccCCCCceeccEEEEEEeCC-CceEEEEEEeCCCcCCCC
Q 045058          597 ILELGILNAVGLHPMKTRDGRGTSDTYCVAKYGHKWVRTRTLVDNLSPKYNEQYTWEVFDP-ATVLTVGVFDNSQLGEKS  675 (1005)
Q Consensus       597 ~l~v~i~~a~~L~~~~~~~~~~~~dpyv~~~~g~~~~~T~~~~~t~nP~wne~f~~~v~~~-~~~l~i~v~d~~~~~~~~  675 (1005)
                      .|+|+|++|+||+..+   ..+.+||||++.+++...+|+++++|+||.|||.|.|.+.++ ...|.|+|||++.++   
T Consensus         1 ~~~V~v~~a~~L~~~~---~~~~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~v~v~d~~~~~---   74 (116)
T cd08376           1 VVTIVLVEGKNLPPMD---DNGLSDPYVKFRLGNEKYKSKVCSKTLNPQWLEQFDLHLFDDQSQILEIEVWDKDTGK---   74 (116)
T ss_pred             CEEEEEEEEECCCCCC---CCCCCCcEEEEEECCEeEecccccCCCCCceeEEEEEEecCCCCCEEEEEEEECCCCC---
Confidence            3789999999999754   467899999999999999999999999999999999999876 689999999998765   


Q ss_pred             CCCCCcccEEEEEEcccccCCCEEeeeEeeeecCCCCCceeeEEEEEEEEe
Q 045058          676 NGNKDLKIGKVRIRISTLETGRIYTHSYPLLVLHPTGVKKMGELHLAIRFS  726 (1005)
Q Consensus       676 ~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~G~i~l~~~~~  726 (1005)
                         +|++||++.++|+++..+.....||+|..       ..|+|++++.++
T Consensus        75 ---~~~~iG~~~~~l~~l~~~~~~~~w~~L~~-------~~G~~~~~~~~~  115 (116)
T cd08376          75 ---KDEFIGRCEIDLSALPREQTHSLELELED-------GEGSLLLLLTLT  115 (116)
T ss_pred             ---CCCeEEEEEEeHHHCCCCCceEEEEEccC-------CCcEEEEEEEec
Confidence               89999999999999999888899999961       139999988763

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei

>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.74  E-value=2.6e-17  Score=155.79  Aligned_cols=119  Identities=29%  Similarity=0.420  Sum_probs=102.8

Q ss_pred             EEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeeecCCCCCeeeeEEEEeecCCC---CcEEEEEEEeCC-CC-CCc
Q 045058          272 LYVRVVKARELPAMDLTGSIDPFVEVKIGNYKGITKHYEKNQNPQWHQVFAFSRDRMQ---ASVLEVVIKDKD-LV-KDD  346 (1005)
Q Consensus       272 L~V~v~~a~~L~~~~~~g~~dPyv~v~~~~~~~kT~~~~~~~nP~wne~f~f~~~~~~---~~~l~v~V~d~~-~~-~d~  346 (1005)
                      |.|+|++|++|+..+..|.+||||++++++++++|++++++.||.|||.|.|.+.+..   ...|.|+|||++ ++ +++
T Consensus         2 L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~~~rT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~~~~~d~   81 (127)
T cd04022           2 LVVEVVDAQDLMPKDGQGSSSAYVELDFDGQKKRTRTKPKDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRRSGRRRS   81 (127)
T ss_pred             eEEEEEEeeCCCCCCCCCCcCcEEEEEECCEEecceeEcCCCCCccceEEEEEccCHHHccCCeEEEEEeeCCCCcCCCC
Confidence            7899999999999998899999999999999999999999999999999999986432   368999999998 55 799


Q ss_pred             eeEEEEEEceecCCCCCCCCCCCCeEEEeecCCC-CccceEEEEEEEEe
Q 045058          347 FVGIVRFDINEVPLRVPPDSPLAPEWYRLEDKKG-EKIKGELMLAVWIG  394 (1005)
Q Consensus       347 ~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~-~~~~G~i~l~~~~~  394 (1005)
                      +||++.+++.++...    .....+||+|..+.. .+.+|+|.|++++.
T Consensus        82 ~lG~v~i~l~~l~~~----~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~  126 (127)
T cd04022          82 FLGRVRISGTSFVPP----SEAVVQRYPLEKRGLFSRVRGEIGLKVYIT  126 (127)
T ss_pred             eeeEEEEcHHHcCCC----CCccceEeEeeeCCCCCCccEEEEEEEEEc
Confidence            999999999999732    245789999987542 23789999999874

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates

>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks)

Probab=99.74  E-value=1.2e-17  Score=156.07  Aligned_cols=105  Identities=24%  Similarity=0.339  Sum_probs=89.8

Q ss_pred             CcEEEEEEEEeecCCCCCCCCCCCcEEEEEEC-----CeEeeccccCCCCCCceeeEEEEEeccCccccceEEEEEEEeC
Q 045058            3 NLKLGVQVVGAHNLLPKDGKGSSSAFVELYFD-----GQRFRTTIKENDLNPVWNESFYFNISDASKLHYLTLEAYIYNN   77 (1005)
Q Consensus         3 ~~~l~V~v~~a~~L~~~d~~g~~dpyv~v~~~-----~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~   77 (1005)
                      .+.|.|+|++|+||+.++ .|.+||||+|++.     ..++||+++++++||+|||+|.|.+...+.+....|.|+|||+
T Consensus        12 ~~~L~V~Vi~A~~L~~~~-~~~~DpyVkv~l~~~~~~~~~~kT~v~~~~~nP~wnE~F~f~~~~~~~l~~~~L~~~V~d~   90 (122)
T cd08381          12 NGTLFVMVMHAKNLPLLD-GSDPDPYVKTYLLPDPQKTTKRKTKVVRKTRNPTFNEMLVYDGLPVEDLQQRVLQVSVWSH   90 (122)
T ss_pred             CCEEEEEEEEeeCCCCCC-CCCCCCEEEEEEeeCCccCCceeCCccCCCCCCCcccEEEEecCChHHhCCCEEEEEEEeC
Confidence            468999999999999999 8999999999995     3478999999999999999999997333345667999999999


Q ss_pred             CCCCCCCcccEEEEEeCCcccCCCCceeeeEec
Q 045058           78 IGDTNSRSFLGKVCLTGNSFVPLSDSVVLHYPL  110 (1005)
Q Consensus        78 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L  110 (1005)
                      +. .+++++||++.++|.++..... ...||+|
T Consensus        91 d~-~~~~~~lG~~~i~l~~l~~~~~-~~~W~~L  121 (122)
T cd08381          91 DS-LVENEFLGGVCIPLKKLDLSQE-TEKWYPL  121 (122)
T ss_pred             CC-CcCCcEEEEEEEeccccccCCC-ccceEEC
Confidence            64 5689999999999999876543 3579998

There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut

>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins

Probab=99.74  E-value=2e-17  Score=157.37  Aligned_cols=122  Identities=28%  Similarity=0.333  Sum_probs=103.0

Q ss_pred             cEEEEEEEEeecCCCCCC--CCCCCcEEEEEECCeEeeccccCCCCCCceeeEEEEEeccCccccceEEEEEEEeCCCCC
Q 045058            4 LKLGVQVVGAHNLLPKDG--KGSSSAFVELYFDGQRFRTTIKENDLNPVWNESFYFNISDASKLHYLTLEAYIYNNIGDT   81 (1005)
Q Consensus         4 ~~l~V~v~~a~~L~~~d~--~g~~dpyv~v~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~~~   81 (1005)
                      |.|+|+|++|+||..++.  .|.+||||+|.+++++++|+++++++||+|||+|.|.+...   ....|.|+|||++. .
T Consensus         1 g~l~v~v~~a~~L~~~~~~~~~~~dPyv~v~~~~~~~kT~~~~~t~~P~Wne~f~~~~~~~---~~~~l~i~v~d~~~-~   76 (128)
T cd04024           1 GVLRVHVVEAKDLAAKDRSGKGKSDPYAILSVGAQRFKTQTIPNTLNPKWNYWCEFPIFSA---QNQLLKLILWDKDR-F   76 (128)
T ss_pred             CEEEEEEEEeeCCCcccCCCCCCcCCeEEEEECCEEEecceecCCcCCccCCcEEEEecCC---CCCEEEEEEEECCC-C
Confidence            579999999999999888  88999999999999999999999999999999999999652   23689999999964 4


Q ss_pred             CCCcccEEEEEeCCcccCC--CCceeeeEecccCC--CcceeeeEEEEEEEE
Q 045058           82 NSRSFLGKVCLTGNSFVPL--SDSVVLHYPLEKRG--IFSHVRGELGLKVYI  129 (1005)
Q Consensus        82 ~~d~~lG~~~i~l~~l~~~--~~~~~~w~~L~~~~--~~~~~~G~i~l~~~~  129 (1005)
                      +.+++||++.+++.++...  ......||+|.+..  ....++|+|+|++.|
T Consensus        77 ~~~~~lG~~~i~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~~~G~i~l~~~~  128 (128)
T cd04024          77 AGKDYLGEFDIALEEVFADGKTGQSDKWITLKSTRPGKTSVVSGEIHLQFSW  128 (128)
T ss_pred             CCCCcceEEEEEHHHhhcccccCccceeEEccCcccCccccccceEEEEEEC
Confidence            5899999999999998632  23345899998763  234679999999864

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu

>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

Probab=99.74  E-value=3.6e-17  Score=152.41  Aligned_cols=115  Identities=23%  Similarity=0.405  Sum_probs=99.6

Q ss_pred             EEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEeeccccCCCCCCceeeEEEEEeccCccccceEEEEEEEeCCCCCCCC
Q 045058            5 KLGVQVVGAHNLLPKDGKGSSSAFVELYFDGQRFRTTIKENDLNPVWNESFYFNISDASKLHYLTLEAYIYNNIGDTNSR   84 (1005)
Q Consensus         5 ~l~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~~~~~d   84 (1005)
                      .|+|+|++|+||+.++..|.+||||++++++++++|+++++|+||.|||+|.|.+....   ...|.|+|||++. .++|
T Consensus         1 ~~~V~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~---~~~l~v~v~d~~~-~~~~   76 (116)
T cd08376           1 VVTIVLVEGKNLPPMDDNGLSDPYVKFRLGNEKYKSKVCSKTLNPQWLEQFDLHLFDDQ---SQILEIEVWDKDT-GKKD   76 (116)
T ss_pred             CEEEEEEEEECCCCCCCCCCCCcEEEEEECCEeEecccccCCCCCceeEEEEEEecCCC---CCEEEEEEEECCC-CCCC
Confidence            37899999999999998899999999999999999999999999999999999986542   3689999999954 4689


Q ss_pred             cccEEEEEeCCcccCCCCceeeeEecccCCCcceeeeEEEEEEEEe
Q 045058           85 SFLGKVCLTGNSFVPLSDSVVLHYPLEKRGIFSHVRGELGLKVYIT  130 (1005)
Q Consensus        85 ~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~~  130 (1005)
                      ++||++.+++.++..... ...|++|++.      +|++++.+.+.
T Consensus        77 ~~iG~~~~~l~~l~~~~~-~~~w~~L~~~------~G~~~~~~~~~  115 (116)
T cd08376          77 EFIGRCEIDLSALPREQT-HSLELELEDG------EGSLLLLLTLT  115 (116)
T ss_pred             CeEEEEEEeHHHCCCCCc-eEEEEEccCC------CcEEEEEEEec
Confidence            999999999999876544 4689999854      48998887654

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei

>cd08375 C2_Intersectin C2 domain present in Intersectin

Probab=99.74  E-value=3.8e-17  Score=155.37  Aligned_cols=122  Identities=23%  Similarity=0.410  Sum_probs=103.6

Q ss_pred             ceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeeecCCCCCeeeeEEEEeecCCCCcEEEEEEEeCC-CCCCc
Q 045058          268 RMYFLYVRVVKARELPAMDLTGSIDPFVEVKIGNYKGITKHYEKNQNPQWHQVFAFSRDRMQASVLEVVIKDKD-LVKDD  346 (1005)
Q Consensus       268 ~~~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~~~~~kT~~~~~~~nP~wne~f~f~~~~~~~~~l~v~V~d~~-~~~d~  346 (1005)
                      ..|.|+|+|++|++|+..+..|.+||||+++++++.++|++++++.||.|||+|.|.+.+.....|.|+|||++ +++|+
T Consensus        13 ~~G~L~V~Vi~A~~L~~~d~~g~~DPYv~v~~~~~~~kT~vi~~t~nP~Wne~f~f~v~~~~~~~l~i~V~D~d~~~~d~   92 (136)
T cd08375          13 GIGRLMVVIVEGRDLKPCNSNGKSDPYCEVSMGSQEHKTKVVSDTLNPKWNSSMQFFVKDLEQDVLCITVFDRDFFSPDD   92 (136)
T ss_pred             CcEEEEEEEEEeeCCCCCCCCCCcCcEEEEEECCEeeeccccCCCCCCccCceEEEEecCccCCEEEEEEEECCCCCCCC
Confidence            45899999999999999998999999999999999999999999999999999999998777789999999999 77899


Q ss_pred             eeEEEEEEceecCCCCCCCCCCCCeEEEeecCCCCccceEEEEEEEE
Q 045058          347 FVGIVRFDINEVPLRVPPDSPLAPEWYRLEDKKGEKIKGELMLAVWI  393 (1005)
Q Consensus       347 ~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~G~i~l~~~~  393 (1005)
                      +||++.+++.++............+|..|...    .+|+|++++.+
T Consensus        93 ~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~----~~g~i~l~~~~  135 (136)
T cd08375          93 FLGRTEIRVADILKETKESKGPITKRLLLHEV----PTGEVVVKLDL  135 (136)
T ss_pred             eeEEEEEEHHHhccccccCCCcEEEEeccccc----cceeEEEEEEe
Confidence            99999999999986322222334456666432    46999999875

A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro

>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins

Probab=99.73  E-value=3.8e-17  Score=155.38  Aligned_cols=122  Identities=22%  Similarity=0.403  Sum_probs=102.4

Q ss_pred             eEEEEEEEEecCCCCCCCCCCCCCCCcEEEEEECCEEEEeeeccCCCCceeccEEEEEEeC-CCceEEEEEEeCCCcCCC
Q 045058          596 GILELGILNAVGLHPMKTRDGRGTSDTYCVAKYGHKWVRTRTLVDNLSPKYNEQYTWEVFD-PATVLTVGVFDNSQLGEK  674 (1005)
Q Consensus       596 g~l~v~i~~a~~L~~~~~~~~~~~~dpyv~~~~g~~~~~T~~~~~t~nP~wne~f~~~v~~-~~~~l~i~v~d~~~~~~~  674 (1005)
                      |.|+|+|++|+||++.+. .+.+.+||||++.+++..++|+++++++||.|||.|.|++.+ ....|.|+|||++..+  
T Consensus         1 g~l~v~v~~a~~L~~~~~-~~~~~~dPyv~v~~~~~~~kT~~~~~t~~P~Wne~f~~~~~~~~~~~l~i~v~d~~~~~--   77 (128)
T cd04024           1 GVLRVHVVEAKDLAAKDR-SGKGKSDPYAILSVGAQRFKTQTIPNTLNPKWNYWCEFPIFSAQNQLLKLILWDKDRFA--   77 (128)
T ss_pred             CEEEEEEEEeeCCCcccC-CCCCCcCCeEEEEECCEEEecceecCCcCCccCCcEEEEecCCCCCEEEEEEEECCCCC--
Confidence            789999999999996542 126789999999999999999999999999999999999987 5789999999998765  


Q ss_pred             CCCCCCcccEEEEEEcccccC---CCEEeeeEeeeecCCC-CCceeeEEEEEEE
Q 045058          675 SNGNKDLKIGKVRIRISTLET---GRIYTHSYPLLVLHPT-GVKKMGELHLAIR  724 (1005)
Q Consensus       675 ~~~~~d~~lG~~~i~l~~l~~---~~~~~~~~~L~~~~~~-~~~~~G~i~l~~~  724 (1005)
                          ++++||.+.|+|.++..   ......||+|...... .....|+|+|++.
T Consensus        78 ----~~~~lG~~~i~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~~~G~i~l~~~  127 (128)
T cd04024          78 ----GKDYLGEFDIALEEVFADGKTGQSDKWITLKSTRPGKTSVVSGEIHLQFS  127 (128)
T ss_pred             ----CCCcceEEEEEHHHhhcccccCccceeEEccCcccCccccccceEEEEEE
Confidence                78999999999999873   3446799999855332 2234799999885

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu

>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein

Probab=99.73  E-value=4.6e-17  Score=153.71  Aligned_cols=118  Identities=25%  Similarity=0.408  Sum_probs=100.3

Q ss_pred             EEEEEEEeecCCCCCCCCCCCcEEEEEECC--eEeeccccCCCCCCceeeEEEEEeccCccccceEEEEEEEeCCCCCCC
Q 045058            6 LGVQVVGAHNLLPKDGKGSSSAFVELYFDG--QRFRTTIKENDLNPVWNESFYFNISDASKLHYLTLEAYIYNNIGDTNS   83 (1005)
Q Consensus         6 l~V~v~~a~~L~~~d~~g~~dpyv~v~~~~--~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~~~~~   83 (1005)
                      |.|+|++|+||+.  ..|.+||||++++++  ++++|+++++++||+|||.|.|.+...    ...|.|+|||++. .++
T Consensus         1 l~v~v~~A~~L~~--~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~----~~~l~~~v~d~~~-~~~   73 (126)
T cd08678           1 LLVKNIKANGLSE--AAGSSNPYCVLEMDEPPQKYQSSTQKNTSNPFWDEHFLFELSPN----SKELLFEVYDNGK-KSD   73 (126)
T ss_pred             CEEEEEEecCCCC--CCCCcCCEEEEEECCCCcEEEeEEEecCCCCccCceEEEEeCCC----CCEEEEEEEECCC-CCC
Confidence            6799999999987  678999999999974  578999999999999999999998542    2579999999964 458


Q ss_pred             CcccEEEEEeCCcccCCCCceeeeEecccCCC-cceeeeEEEEEEEEec
Q 045058           84 RSFLGKVCLTGNSFVPLSDSVVLHYPLEKRGI-FSHVRGELGLKVYITD  131 (1005)
Q Consensus        84 d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~-~~~~~G~i~l~~~~~~  131 (1005)
                      |++||++.+++.++...... ..|++|.++.. ....+|+|.+++.|.+
T Consensus        74 ~~~lG~~~i~l~~l~~~~~~-~~~~~L~~~~~~~~~~~G~l~l~~~~~~  121 (126)
T cd08678          74 SKFLGLAIVPFDELRKNPSG-RQIFPLQGRPYEGDSVSGSITVEFLFME  121 (126)
T ss_pred             CceEEEEEEeHHHhccCCce-eEEEEecCCCCCCCCcceEEEEEEEEec
Confidence            99999999999998766544 47999987633 3467999999999987

The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a

>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins

Probab=99.73  E-value=4.9e-17  Score=152.59  Aligned_cols=118  Identities=25%  Similarity=0.390  Sum_probs=99.3

Q ss_pred             EEEEEEEEeecCCCCCCCCCCCcEEEEEEC-CeEeeccccCCCCCCceeeEEEEEeccCccccceEEEEEEEeCCCCCCC
Q 045058            5 KLGVQVVGAHNLLPKDGKGSSSAFVELYFD-GQRFRTTIKENDLNPVWNESFYFNISDASKLHYLTLEAYIYNNIGDTNS   83 (1005)
Q Consensus         5 ~l~V~v~~a~~L~~~d~~g~~dpyv~v~~~-~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~~~~~   83 (1005)
                      .|+|+|++|++|..++..|.+||||+++++ .+.++|+++++++||+|||+|.|.+..     ...|.|+|||++.....
T Consensus         1 ~l~v~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~-----~~~l~i~V~d~~~~~~~   75 (123)
T cd08382           1 KVRLTVLCADGLAKRDLFRLPDPFAVITVDGGQTHSTDVAKKTLDPKWNEHFDLTVGP-----SSIITIQVFDQKKFKKK   75 (123)
T ss_pred             CeEEEEEEecCCCccCCCCCCCcEEEEEECCccceEccEEcCCCCCcccceEEEEeCC-----CCEEEEEEEECCCCCCC
Confidence            389999999999999989999999999997 568999999999999999999999954     25899999999654432


Q ss_pred             -CcccEEEEEeCCcccCCCCceeeeEecccCCC--cceeeeEEEEEE
Q 045058           84 -RSFLGKVCLTGNSFVPLSDSVVLHYPLEKRGI--FSHVRGELGLKV  127 (1005)
Q Consensus        84 -d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~--~~~~~G~i~l~~  127 (1005)
                       |++||++.+++.++.........|++|++.+.  ...+.|+|.+++
T Consensus        76 ~d~~lG~~~i~l~~l~~~~~~~~~~~~l~~~~~~~~~~~~G~v~~~~  122 (123)
T cd08382          76 DQGFLGCVRIRANAVLPLKDTGYQRLDLRKLKKSDNLSVRGKIVVSL  122 (123)
T ss_pred             CCceEeEEEEEHHHccccCCCccceeEeecCCCCCCceEeeEEEEEe
Confidence             68999999999998765544456999976543  457799999876

A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are

>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks)

Probab=99.73  E-value=3.3e-17  Score=153.00  Aligned_cols=108  Identities=30%  Similarity=0.536  Sum_probs=93.2

Q ss_pred             cceeeeccccceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeeeeeecCCCCCeeeeEEEEee---cCCC
Q 045058          258 KTASTYDLVERMYFLYVRVVKARELPAMDLTGSIDPFVEVKIGN-----YKGITKHYEKNQNPQWHQVFAFSR---DRMQ  329 (1005)
Q Consensus       258 ~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~~-----~~~kT~~~~~~~nP~wne~f~f~~---~~~~  329 (1005)
                      .++..|+    .+.|.|+|++|+||+..+ ++.+||||++++.+     .+.||++++++.||.|||+|.|.+   .++.
T Consensus         5 ~~~l~y~----~~~L~V~Vi~A~~L~~~~-~~~~DpyVkv~l~~~~~~~~~~kT~v~~~~~nP~wnE~F~f~~~~~~~l~   79 (122)
T cd08381           5 KLSISYK----NGTLFVMVMHAKNLPLLD-GSDPDPYVKTYLLPDPQKTTKRKTKVVRKTRNPTFNEMLVYDGLPVEDLQ   79 (122)
T ss_pred             EEEEEEe----CCEEEEEEEEeeCCCCCC-CCCCCCEEEEEEeeCCccCCceeCCccCCCCCCCcccEEEEecCChHHhC
Confidence            4566666    478999999999999999 89999999999974     457899999999999999999986   3456


Q ss_pred             CcEEEEEEEeCC-CCCCceeEEEEEEceecCCCCCCCCCCCCeEEEe
Q 045058          330 ASVLEVVIKDKD-LVKDDFVGIVRFDINEVPLRVPPDSPLAPEWYRL  375 (1005)
Q Consensus       330 ~~~l~v~V~d~~-~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L  375 (1005)
                      ...|.|+|||++ ++++++||++.++|.++..+     .....||+|
T Consensus        80 ~~~L~~~V~d~d~~~~~~~lG~~~i~l~~l~~~-----~~~~~W~~L  121 (122)
T cd08381          80 QRVLQVSVWSHDSLVENEFLGGVCIPLKKLDLS-----QETEKWYPL  121 (122)
T ss_pred             CCEEEEEEEeCCCCcCCcEEEEEEEeccccccC-----CCccceEEC
Confidence            679999999999 77899999999999999864     346789987

There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut

>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1)

Probab=99.73  E-value=7.5e-17  Score=151.81  Aligned_cols=119  Identities=19%  Similarity=0.268  Sum_probs=97.8

Q ss_pred             cEEEEEEEEeecCCCCCCCCCCCcEEEEEECCe-EeeccccCCCCCCceeeEEEEEeccCccccceEEEEEEEeCCCCCC
Q 045058            4 LKLGVQVVGAHNLLPKDGKGSSSAFVELYFDGQ-RFRTTIKENDLNPVWNESFYFNISDASKLHYLTLEAYIYNNIGDTN   82 (1005)
Q Consensus         4 ~~l~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~-~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~~~~   82 (1005)
                      +.|+|+|++|+||+.+   +.+||||.|++++. ..||+++ +++||+|||+|.|.+..++   ...+.|.|||++. .+
T Consensus         4 ~~L~V~Vi~A~~L~~~---~~~DPYv~v~l~~~~~~kT~v~-~~~nP~WnE~f~f~~~~~~---~~~l~v~v~d~~~-~~   75 (126)
T cd08400           4 RSLQLNVLEAHKLPVK---HVPHPYCVISLNEVKVARTKVR-EGPNPVWSEEFVFDDLPPD---VNSFTISLSNKAK-RS   75 (126)
T ss_pred             eEEEEEEEEeeCCCCC---CCCCeeEEEEECCEeEEEeecC-CCCCCccCCEEEEecCCCC---cCEEEEEEEECCC-CC
Confidence            5799999999999874   47899999999885 4788875 6899999999999865433   1368899999864 46


Q ss_pred             CCcccEEEEEeCCcccCCCCceeeeEecccCCC-cceeeeEEEEEEEEec
Q 045058           83 SRSFLGKVCLTGNSFVPLSDSVVLHYPLEKRGI-FSHVRGELGLKVYITD  131 (1005)
Q Consensus        83 ~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~-~~~~~G~i~l~~~~~~  131 (1005)
                      +|++||++.++|.++...+. .+.||+|.+.+. .....|+|++++.|.+
T Consensus        76 ~d~~iG~v~i~l~~l~~~~~-~~~W~~L~~~~~~~~~~~G~i~l~l~~~~  124 (126)
T cd08400          76 KDSEIAEVTVQLSKLQNGQE-TDEWYPLSSASPLKGGEWGSLRIRARYSH  124 (126)
T ss_pred             CCCeEEEEEEEHhHccCCCc-ccEeEEcccCCCCCCCcCcEEEEEEEEEc
Confidence            89999999999999877554 468999988753 3467899999999876

RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki

>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins

Probab=99.73  E-value=3.2e-17  Score=149.35  Aligned_cols=103  Identities=25%  Similarity=0.359  Sum_probs=90.2

Q ss_pred             EEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEeeccccCCCCCCceeeEEEEEeccCccccceEEEEEEEeCCCCCCCC
Q 045058            5 KLGVQVVGAHNLLPKDGKGSSSAFVELYFDGQRFRTTIKENDLNPVWNESFYFNISDASKLHYLTLEAYIYNNIGDTNSR   84 (1005)
Q Consensus         5 ~l~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~~~~~d   84 (1005)
                      .|.|+|++|+||+..+..+.+||||+|++++++++|++++++.||+|||+|.|.+.+++   ...|.|+|||++.    +
T Consensus         1 ~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~---~~~l~v~v~d~~~----~   73 (105)
T cd04050           1 LLFVYLDSAKNLPLAKSTKEPSPYVELTVGKTTQKSKVKERTNNPVWEEGFTFLVRNPE---NQELEIEVKDDKT----G   73 (105)
T ss_pred             CEEEEEeeecCCCCcccCCCCCcEEEEEECCEEEeCccccCCCCCcccceEEEEeCCCC---CCEEEEEEEECCC----C
Confidence            48999999999999988899999999999999999999999999999999999997643   3589999999852    8


Q ss_pred             cccEEEEEeCCcccCCC-CceeeeEecccCC
Q 045058           85 SFLGKVCLTGNSFVPLS-DSVVLHYPLEKRG  114 (1005)
Q Consensus        85 ~~lG~~~i~l~~l~~~~-~~~~~w~~L~~~~  114 (1005)
                      ++||++.++|.++.... ...+.||+|.+++
T Consensus        74 ~~iG~~~i~l~~l~~~~~~~~~~w~~L~~~g  104 (105)
T cd04050          74 KSLGSLTLPLSELLKEPDLTLDQPFPLDNSG  104 (105)
T ss_pred             CccEEEEEEHHHhhccccceeeeeEecCCCC
Confidence            89999999999987543 3456899998754

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm

>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4

Probab=99.73  E-value=5.5e-17  Score=152.73  Aligned_cols=118  Identities=27%  Similarity=0.450  Sum_probs=99.7

Q ss_pred             EEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEeeccccCCCCCCceeeEEEEEeccCccccceEEEEEEEeCCCCCCCC
Q 045058            5 KLGVQVVGAHNLLPKDGKGSSSAFVELYFDGQRFRTTIKENDLNPVWNESFYFNISDASKLHYLTLEAYIYNNIGDTNSR   84 (1005)
Q Consensus         5 ~l~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~~~~~d   84 (1005)
                      +|+|+|++|++|..++..|.+||||+|++++.+++|+++++++||+|||+|.|.+....   ...|.|+|||++. .+++
T Consensus         1 ~L~v~vi~a~~L~~~d~~~~~DPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~---~~~l~~~v~d~~~-~~~~   76 (123)
T cd04025           1 RLRCHVLEARDLAPKDRNGTSDPFVRVFYNGQTLETSVVKKSCYPRWNEVFEFELMEGA---DSPLSVEVWDWDL-VSKN   76 (123)
T ss_pred             CEEEEEEEeeCCCCCCCCCCcCceEEEEECCEEEeceeecCCCCCccCcEEEEEcCCCC---CCEEEEEEEECCC-CCCC
Confidence            58999999999999998889999999999999999999999999999999999986543   3579999999954 5589


Q ss_pred             cccEEEEEeCCcccCCCCceeeeEecccCCC----cceeeeEEEEEE
Q 045058           85 SFLGKVCLTGNSFVPLSDSVVLHYPLEKRGI----FSHVRGELGLKV  127 (1005)
Q Consensus        85 ~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~----~~~~~G~i~l~~  127 (1005)
                      ++||++.+++.++...+.. ..||.|.+...    ..+..|.|++.|
T Consensus        77 ~~iG~~~~~l~~l~~~~~~-~~w~~L~~~~~~~~~~~~~~G~l~~~~  122 (123)
T cd04025          77 DFLGKVVFSIQTLQQAKQE-EGWFRLLPDPRAEEESGGNLGSLRLKV  122 (123)
T ss_pred             cEeEEEEEEHHHcccCCCC-CCEEECCCCCCCCccccCceEEEEEEe
Confidence            9999999999998764433 57999986532    235679988876

RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a

>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]

Probab=99.72  E-value=1.4e-17  Score=190.80  Aligned_cols=399  Identities=19%  Similarity=0.222  Sum_probs=254.8

Q ss_pred             ceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeeecCCCCCeeeeEEEEeecCC---------CCcEEEEEEE
Q 045058          268 RMYFLYVRVVKARELPAMDLTGSIDPFVEVKIGNYKGITKHYEKNQNPQWHQVFAFSRDRM---------QASVLEVVIK  338 (1005)
Q Consensus       268 ~~~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~~~~~kT~~~~~~~nP~wne~f~f~~~~~---------~~~~l~v~V~  338 (1005)
                      ....+++.+.+|+.|...+..+.+|||+.+...++...|.++.+|+||.|+++..|.-.+.         .-..+.++||
T Consensus       204 ~~~~lR~yiyQar~L~a~dk~~~sdp~a~v~f~~qs~~T~~v~~tl~ptwdq~~~f~~~ei~ge~~~~~~~ppi~v~e~y  283 (1105)
T KOG1326|consen  204 IHSPLRSYIYQARALGAPDKDDESDPDAAVEFCGQSKETEVVPGTLNPTWDQTIIFDEVEIYGEAHLVLKNPPIRVFEVY  283 (1105)
T ss_pred             hhhhhHHHHHHHHhhcCCCcccCCCchhhhhcccccceeEeecCcCCCCccceeeccceeecCccchhhcCCCeEEEEee
Confidence            3456889999999999999999999999999999999999999999999999999963221         1256889999


Q ss_pred             eCC-CCCCceeEEEEEEceecCCCCCCCCCCCCeEEEeecCCCCccceEEEEEEEEeccCCcccccccCCCCCCCCCCCC
Q 045058          339 DKD-LVKDDFVGIVRFDINEVPLRVPPDSPLAPEWYRLEDKKGEKIKGELMLAVWIGTQADEAFSDAWHSDAATPVDSTP  417 (1005)
Q Consensus       339 d~~-~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~G~i~l~~~~~~~~d~~~~~~~~~~~~~~~~~~~  417 (1005)
                      |.+ .+.++++|.+.....-...      +..-.|+++.....  ..|++.++.....++-   +-.+      |.....
T Consensus       284 d~dr~g~~ef~gr~~~~p~V~~~------~p~lkw~p~~rg~~--l~gd~l~a~eliq~~~---~i~~------p~~~~~  346 (1105)
T KOG1326|consen  284 DLDRSGINEFKGRKKQRPYVMVQ------CPALKWVPTMRGAF--LDGDVLIAAELIQIGK---PIPQ------PPPQRE  346 (1105)
T ss_pred             hhhhhchHHhhcccccceEEEec------CCccceEEeecccc--cccchhHHHHHHhhcC---CCCC------CCcccc
Confidence            999 7899999998876543332      23567898876543  3476666543222211   0111      111111


Q ss_pred             ccccccccccccCCceEEEEEEEEEeeeCCCCCCCCCCCcEEEEEECCeEEeeecccCCCCCcccccEEEE-EeeCC---
Q 045058          418 AITAVIRSKVYHSPRLWYVRVNVVEAQDLVPTEKNHFPDVYVKAQIGNQVLKTKICQARTLSAVWNEDLLF-VAAEP---  493 (1005)
Q Consensus       418 ~~~~~~r~~~~~~~~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~lg~~~~kT~~~~~~t~~P~w~e~f~f-~v~~~---  493 (1005)
                      .....+...+....+.+.+.|-...-+|+..........|-+-+.+|++..++..+...-.||.|...+.+ .+..+   
T Consensus       347 ~~~~~vp~~iRp~~q~~~~evl~wgLrn~k~~~m~~~~~P~~~~e~g~e~v~s~~I~~~k~npnf~s~~~~~~v~lpd~e  426 (1105)
T KOG1326|consen  347 IIFSLVPKKIRPKTQIGKAELLMWGLRNPKKSGMASTFSPALLVEFGGERVSSFSIFNRKKNPNFPSRVLGRLVILPDEE  426 (1105)
T ss_pred             cceeccccCCCcceeeeeeehhhhhhcccccccccccCCcceeEeeCCceEeeeeehhhhhCCCCceeEEEEEEeccchH
Confidence            12222222222334556666666666776666666678899999999999999888656678888876654 33333   


Q ss_pred             -CCCeEEEEEEeccCCCCCceeEEEEEccc-ccccc-ccc-----------------------ccccceeEEccCCCccc
Q 045058          494 -FEDHLVLTVEDRVGPGKDEIIGRVIIPLS-AIEKR-ADE-----------------------RIIHSRWFNLEKPVAVD  547 (1005)
Q Consensus       494 -~~~~l~i~V~d~d~~~~d~~iG~~~i~l~-~l~~~-~~~-----------------------~~~~~~w~~L~~~~~~~  547 (1005)
                       ....+.++|.|.+.++.-..+|+|.|.-. ...-. ...                       +.....|++........
T Consensus       427 ~Y~ppl~akvvd~~~fg~~~v~g~c~i~~l~nf~c~p~~~~~~~Pq~~~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  506 (1105)
T KOG1326|consen  427 LYMPPLNAKVVDLRQFGRMEVVGQCKILSLYNFFCDPSAVNSITPQFASDPVSIMMGSTDNEIRHCNSSTLPASPHEDEE  506 (1105)
T ss_pred             hhCccceeEEEecccccceeehhhhcchhhhhhccCchhhcccCcCCCCCchhhhcCCchhhhhhccccCCCCCcccccc
Confidence             34479999999999999999999987522 11100 000                       00001111111111000


Q ss_pred             ccc--------------ccccccccc--eeEEEe---ec-------------------CCc-------cccCCCc----c
Q 045058          548 VDQ--------------LKKEKFSSR--IHLRVC---LD-------------------GGY-------HVLDEST----H  578 (1005)
Q Consensus       548 ~~~--------------~~~~~~~~~--i~l~~~---l~-------------------~~~-------~~~~~~~----~  578 (1005)
                      ...              .+-..+.-+  ..+.++   ++                   |..       ++..+.+    .
T Consensus       507 e~~~~~w~k~~~~~~~~~k~~~~~~K~~~~LKiyn~ele~v~ef~~l~D~~~~f~l~rG~~~~e~~e~~Ivg~fKgl~rI  586 (1105)
T KOG1326|consen  507 EREVDWWGKFYPSAEENAKWEVYEHKINVTLKIYNMELEMVAEFRGLQDWAVTFKLYRGKEGLECLEQQIVGEFKGLFRI  586 (1105)
T ss_pred             ceehhhhhhccccccccccccccccccceEEEEehhhhhhHHHHhhhhhccceeEeeeccccCCCcccchhhhhhcceee
Confidence            000              000001112  122222   00                   000       0000000    0


Q ss_pred             c------cCCCccccc-ccC--CCcceEEEEEEEEecCCCCCCCCCCCCCCCcEEEEEECCEEE--EeeeccCCCCceec
Q 045058          579 Y------SSDLRPTAK-QLW--RPSIGILELGILNAVGLHPMKTRDGRGTSDTYCVAKYGHKWV--RTRTLVDNLSPKYN  647 (1005)
Q Consensus       579 ~------~~d~~~~~~-~~~--~~~~g~l~v~i~~a~~L~~~~~~~~~~~~dpyv~~~~g~~~~--~T~~~~~t~nP~wn  647 (1005)
                      |      .....|... .+.  .+..-.++|+|++|.+|.+.   |++|.+|||+++.+|++..  ++..+.+|+||+|+
T Consensus       587 yp~~~~~~~p~~pr~~~~~~~~~pi~~LvrVyvv~A~~L~p~---D~ng~adpYv~l~lGk~~~~d~~~yip~tlnPVfg  663 (1105)
T KOG1326|consen  587 YPVPRNPSSPAPPRHFLDLPKEEPIKCLVRVYVVEAFSLQPS---DGNGDADPYVKLLLGKKRTLDRAHYIPNTLNPVFG  663 (1105)
T ss_pred             ecCCCccCCCCChhhhhcccccCcceeeEEEEEEEeeecccc---CCCCCcCceeeeeeccchhhhhhhcCcCCCCcHHH
Confidence            0      000000000 000  13445788999999999974   6799999999999999885  66778899999999


Q ss_pred             cEEEEEEeCC-CceEEEEEEeCCCcCCCCCCCCCcccEEEEEEccc
Q 045058          648 EQYTWEVFDP-ATVLTVGVFDNSQLGEKSNGNKDLKIGKVRIRIST  692 (1005)
Q Consensus       648 e~f~~~v~~~-~~~l~i~v~d~~~~~~~~~~~~d~~lG~~~i~l~~  692 (1005)
                      +.|++....| ...++++|||+|.++      .|+.||...|+|.+
T Consensus       664 kmfel~~~lp~ek~l~v~vyd~D~~~------~d~~iget~iDLEn  703 (1105)
T KOG1326|consen  664 KMFELECLLPFEKDLIVEVYDHDLEA------QDEKIGETTIDLEN  703 (1105)
T ss_pred             HHHHhhcccchhhcceeEEEEeeccc------ccchhhceehhhhh
Confidence            9999999987 568999999999776      89999999999976

>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4

Probab=99.72  E-value=4.9e-17  Score=153.07  Aligned_cols=119  Identities=27%  Similarity=0.394  Sum_probs=100.8

Q ss_pred             EEEEEEEEecCCCCCCCCCCCCCCCcEEEEEECCEEEEeeeccCCCCceeccEEEEEEeCC-CceEEEEEEeCCCcCCCC
Q 045058          597 ILELGILNAVGLHPMKTRDGRGTSDTYCVAKYGHKWVRTRTLVDNLSPKYNEQYTWEVFDP-ATVLTVGVFDNSQLGEKS  675 (1005)
Q Consensus       597 ~l~v~i~~a~~L~~~~~~~~~~~~dpyv~~~~g~~~~~T~~~~~t~nP~wne~f~~~v~~~-~~~l~i~v~d~~~~~~~~  675 (1005)
                      +|+|+|++|++|..++   ..+.+||||++.+++..++|+++++++||+|||.|.|.+... ...|.|+|||++.++   
T Consensus         1 ~L~v~vi~a~~L~~~d---~~~~~DPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~~~v~d~~~~~---   74 (123)
T cd04025           1 RLRCHVLEARDLAPKD---RNGTSDPFVRVFYNGQTLETSVVKKSCYPRWNEVFEFELMEGADSPLSVEVWDWDLVS---   74 (123)
T ss_pred             CEEEEEEEeeCCCCCC---CCCCcCceEEEEECCEEEeceeecCCCCCccCcEEEEEcCCCCCCEEEEEEEECCCCC---
Confidence            4899999999999754   467899999999999999999999999999999999999875 578999999998766   


Q ss_pred             CCCCCcccEEEEEEcccccCCCEEeeeEeeeecCCC---CCceeeEEEEEEE
Q 045058          676 NGNKDLKIGKVRIRISTLETGRIYTHSYPLLVLHPT---GVKKMGELHLAIR  724 (1005)
Q Consensus       676 ~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~---~~~~~G~i~l~~~  724 (1005)
                         ++++||.+.++|+++..+.....||.|......   ..+..|.|++.++
T Consensus        75 ---~~~~iG~~~~~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~~G~l~~~~~  123 (123)
T cd04025          75 ---KNDFLGKVVFSIQTLQQAKQEEGWFRLLPDPRAEEESGGNLGSLRLKVR  123 (123)
T ss_pred             ---CCcEeEEEEEEHHHcccCCCCCCEEECCCCCCCCccccCceEEEEEEeC
Confidence               789999999999999877666899999754332   2234699888763

RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a

>cd08677 C2A_Synaptotagmin-13 C2 domain

Probab=99.72  E-value=3e-17  Score=148.17  Aligned_cols=101  Identities=14%  Similarity=0.165  Sum_probs=86.3

Q ss_pred             CcceEEEEEEEEecCCCCCCCCCCCCCCCcEEEEEECC----EEEEeeeccCCCCceeccEEEEEEeC---CCceEEEEE
Q 045058          593 PSIGILELGILNAVGLHPMKTRDGRGTSDTYCVAKYGH----KWVRTRTLVDNLSPKYNEQYTWEVFD---PATVLTVGV  665 (1005)
Q Consensus       593 ~~~g~l~v~i~~a~~L~~~~~~~~~~~~dpyv~~~~g~----~~~~T~~~~~t~nP~wne~f~~~v~~---~~~~l~i~v  665 (1005)
                      +..|.|.|+|++|+||+ +     .|.+||||++.+..    .+.+|+++++|+||+|||+|.|.|..   +...|.|+|
T Consensus        11 ~~~~~L~V~vikA~~L~-~-----~g~sDPYVKv~L~~~~k~~k~kT~v~rktlnPvfnE~f~F~v~~~~l~~~tL~~~V   84 (118)
T cd08677          11 KQKAELHVNILEAENIS-V-----DAGCECYISGCVSVSEGQKEAQTALKKLALHTQWEEELVFPLPEEESLDGTLTLTL   84 (118)
T ss_pred             CcCCEEEEEEEEecCCC-C-----CCCCCeEEEEEEcCCcCccEEEcceecCCCCCccccEEEEeCCHHHhCCcEEEEEE
Confidence            56799999999999998 2     35589999999953    46799999999999999999999874   467899999


Q ss_pred             EeCCCcCCCCCCCCCcccEEEEEEcccccCCCEEeeeEee
Q 045058          666 FDNSQLGEKSNGNKDLKIGKVRIRISTLETGRIYTHSYPL  705 (1005)
Q Consensus       666 ~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L  705 (1005)
                      ||+|+++      ++++||++.++++++.-+...++|..|
T Consensus        85 ~d~Drfs------~~d~IG~v~l~l~~~~~~~~~~~W~~~  118 (118)
T cd08677          85 RCCDRFS------RHSTLGELRLKLADVSMMLGAAQWVDL  118 (118)
T ss_pred             EeCCCCC------CCceEEEEEEccccccCCccccchhcC
Confidence            9999887      899999999999987655555677654

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain

>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42)

Probab=99.72  E-value=7.2e-17  Score=154.43  Aligned_cols=119  Identities=28%  Similarity=0.406  Sum_probs=100.0

Q ss_pred             EEEEEEEEecCCCCCCCCCCCCCCCcEEEEEECCE-------EEEeeeccCCCCceeccEEEEEEeCCCceEEEEEEeCC
Q 045058          597 ILELGILNAVGLHPMKTRDGRGTSDTYCVAKYGHK-------WVRTRTLVDNLSPKYNEQYTWEVFDPATVLTVGVFDNS  669 (1005)
Q Consensus       597 ~l~v~i~~a~~L~~~~~~~~~~~~dpyv~~~~g~~-------~~~T~~~~~t~nP~wne~f~~~v~~~~~~l~i~v~d~~  669 (1005)
                      .|+|+|++|+||+..   +..|.+||||++.+++.       .++|+++++++||+|||+|.|.+......|.|+|||++
T Consensus         1 ~L~v~Vi~a~~L~~~---d~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~~~v~d~~   77 (133)
T cd04033           1 ILRVKVLAGIDLAKK---DIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFRVNPREHRLLFEVFDEN   77 (133)
T ss_pred             CEEEEEEEeECCCcc---cCCCCcCcEEEEEEECCCCCCcccceeeeEEcCCCCCcEeeEEEEEEcCCCCEEEEEEEECC
Confidence            389999999999965   45678999999999654       47999999999999999999999776778999999999


Q ss_pred             CcCCCCCCCCCcccEEEEEEcccccCCCE------EeeeEeeeecCCCCCceeeEEEEEEEE
Q 045058          670 QLGEKSNGNKDLKIGKVRIRISTLETGRI------YTHSYPLLVLHPTGVKKMGELHLAIRF  725 (1005)
Q Consensus       670 ~~~~~~~~~~d~~lG~~~i~l~~l~~~~~------~~~~~~L~~~~~~~~~~~G~i~l~~~~  725 (1005)
                      .++      ++++||.+.|+++++..+..      ...||+|......+ +..|+|+|++.|
T Consensus        78 ~~~------~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~-~~~G~l~~~~~~  132 (133)
T cd04033          78 RLT------RDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRPRSSKS-RVKGHLRLYMAY  132 (133)
T ss_pred             CCC------CCCeeEEEEEEHHHCCCcCccccccccchheeeeecCCCC-cceeEEEEEEee
Confidence            766      89999999999999886542      45899998544334 346999999986

Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd08677 C2A_Synaptotagmin-13 C2 domain

Probab=99.72  E-value=4.5e-17  Score=147.08  Aligned_cols=108  Identities=16%  Similarity=0.282  Sum_probs=88.9

Q ss_pred             cceeeeccccceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC----eeeeeeeecCCCCCeeeeEEEEeec--CCCCc
Q 045058          258 KTASTYDLVERMYFLYVRVVKARELPAMDLTGSIDPFVEVKIGN----YKGITKHYEKNQNPQWHQVFAFSRD--RMQAS  331 (1005)
Q Consensus       258 ~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~~----~~~kT~~~~~~~nP~wne~f~f~~~--~~~~~  331 (1005)
                      .++..|+..  .+.|.|+|++|++|+ .  .|.+||||++++..    .+.+|+++++|+||+|||+|.|.+.  ++...
T Consensus         4 ~fsL~Y~~~--~~~L~V~vikA~~L~-~--~g~sDPYVKv~L~~~~k~~k~kT~v~rktlnPvfnE~f~F~v~~~~l~~~   78 (118)
T cd08677           4 HYSLSYDKQ--KAELHVNILEAENIS-V--DAGCECYISGCVSVSEGQKEAQTALKKLALHTQWEEELVFPLPEEESLDG   78 (118)
T ss_pred             EEEEEEcCc--CCEEEEEEEEecCCC-C--CCCCCeEEEEEEcCCcCccEEEcceecCCCCCccccEEEEeCCHHHhCCc
Confidence            455666654  599999999999998 3  46699999999975    4678999999999999999999874  56678


Q ss_pred             EEEEEEEeCC-CCCCceeEEEEEEceecCCCCCCCCCCCCeEEEe
Q 045058          332 VLEVVIKDKD-LVKDDFVGIVRFDINEVPLRVPPDSPLAPEWYRL  375 (1005)
Q Consensus       332 ~l~v~V~d~~-~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L  375 (1005)
                      .|.|+|||+| ++++++||++.+++.++...     ....+|..|
T Consensus        79 tL~~~V~d~Drfs~~d~IG~v~l~l~~~~~~-----~~~~~W~~~  118 (118)
T cd08677          79 TLTLTLRCCDRFSRHSTLGELRLKLADVSMM-----LGAAQWVDL  118 (118)
T ss_pred             EEEEEEEeCCCCCCCceEEEEEEccccccCC-----ccccchhcC
Confidence            8999999999 89999999999999987543     234567543

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain

>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4

Probab=99.72  E-value=8e-17  Score=150.68  Aligned_cols=117  Identities=27%  Similarity=0.400  Sum_probs=99.5

Q ss_pred             EEEEEEEecCCCCCCCCCCCCCCCcEEEEEECCEE-EEeeeccCCCCceeccEEEEEEeCCCceEEEEEEeCCCcCCCCC
Q 045058          598 LELGILNAVGLHPMKTRDGRGTSDTYCVAKYGHKW-VRTRTLVDNLSPKYNEQYTWEVFDPATVLTVGVFDNSQLGEKSN  676 (1005)
Q Consensus       598 l~v~i~~a~~L~~~~~~~~~~~~dpyv~~~~g~~~-~~T~~~~~t~nP~wne~f~~~v~~~~~~l~i~v~d~~~~~~~~~  676 (1005)
                      |.|+|++|+||++++   ..|.+||||++.++++. .||+++.+++||+|||.|.|.+......|.|+|||++.++    
T Consensus         2 l~v~vi~a~~L~~~d---~~g~~DPYv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~~~~~l~v~v~d~~~~~----   74 (121)
T cd04054           2 LYIRIVEGKNLPAKD---ITGSSDPYCIVKVDNEVIIRTATVWKTLNPFWGEEYTVHLPPGFHTVSFYVLDEDTLS----   74 (121)
T ss_pred             EEEEEEEeeCCcCCC---CCCCCCceEEEEECCEeeeeeeeEcCCCCCcccceEEEeeCCCCCEEEEEEEECCCCC----
Confidence            789999999999764   47789999999998764 6999999999999999999999877789999999999776    


Q ss_pred             CCCCcccEEEEEEcccccCC-CEEeeeEeeeecCCCCCceeeEEEEEEE
Q 045058          677 GNKDLKIGKVRIRISTLETG-RIYTHSYPLLVLHPTGVKKMGELHLAIR  724 (1005)
Q Consensus       677 ~~~d~~lG~~~i~l~~l~~~-~~~~~~~~L~~~~~~~~~~~G~i~l~~~  724 (1005)
                        +|++||++.+++.++..+ ...+.|++|......+. ..|+|++.++
T Consensus        75 --~d~~iG~~~~~~~~~~~~~~~~~~W~~L~~~~~~~~-~~G~i~l~~~  120 (121)
T cd04054          75 --RDDVIGKVSLTREVISAHPRGIDGWMNLTEVDPDEE-VQGEIHLELS  120 (121)
T ss_pred             --CCCEEEEEEEcHHHhccCCCCCCcEEECeeeCCCCc-cccEEEEEEE
Confidence              899999999999888754 34679999975544333 4599998875

Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.

>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1)

Probab=99.72  E-value=9.9e-17  Score=151.49  Aligned_cols=117  Identities=29%  Similarity=0.448  Sum_probs=98.6

Q ss_pred             EEEEEEEEeecCCCCCCCCCCCcEEEEEEC-------------CeEeeccccCCCCCCce-eeEEEEEeccCccccceEE
Q 045058            5 KLGVQVVGAHNLLPKDGKGSSSAFVELYFD-------------GQRFRTTIKENDLNPVW-NESFYFNISDASKLHYLTL   70 (1005)
Q Consensus         5 ~l~V~v~~a~~L~~~d~~g~~dpyv~v~~~-------------~~~~~T~v~~~t~nP~W-ne~f~f~v~~~~~~~~~~l   70 (1005)
                      .+.|++++|+||+ ++..|.+||||++++.             +++++|+++++++||+| ||+|.|.+...     ..|
T Consensus         2 ~~~~~~~~A~~L~-~~~fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W~nE~f~f~v~~~-----~~L   75 (137)
T cd08691           2 SFSLSGLQARNLK-KGMFFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVENTINPVWHREQFVFVGLPT-----DVL   75 (137)
T ss_pred             EEEEEEEEeCCCC-CccCCCCCceEEEEEECCCcccccccccccceeeeeeEcCCCCCceEceEEEEEcCCC-----CEE
Confidence            4689999999998 7788999999999984             24789999999999999 99999998532     479


Q ss_pred             EEEEEeCCCCCC--CCcccEEEEEeCCcccCCCC--ceeeeEecccCCCcceeeeEEEEEE
Q 045058           71 EAYIYNNIGDTN--SRSFLGKVCLTGNSFVPLSD--SVVLHYPLEKRGIFSHVRGELGLKV  127 (1005)
Q Consensus        71 ~v~V~d~~~~~~--~d~~lG~~~i~l~~l~~~~~--~~~~w~~L~~~~~~~~~~G~i~l~~  127 (1005)
                      .|+|||++....  .+++||++.+++.++.....  ....||+|++++..+.++|+|.+++
T Consensus        76 ~v~V~D~~~~~~~~~~d~lG~~~i~l~~l~~~~~~~~~~~~~~l~k~~~~s~v~G~~~l~~  136 (137)
T cd08691          76 EIEVKDKFAKSRPIIRRFLGKLSIPVQRLLERHAIGDQELSYTLGRRTPTDHVSGQLTFRF  136 (137)
T ss_pred             EEEEEecCCCCCccCCceEEEEEEEHHHhcccccCCceEEEEECCcCCCCCcEEEEEEEEe
Confidence            999999743221  27999999999999975542  3567999999999999999999986

NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C

>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins

Probab=99.72  E-value=7.2e-17  Score=151.86  Aligned_cols=117  Identities=29%  Similarity=0.506  Sum_probs=100.2

Q ss_pred             eEEEEEEEEecCCCCCCCCC---CCCCCCcEEEEEECCEEEEeeeccCCCCceeccEEEEEEeC-CCceEEEEEEeCCCc
Q 045058          596 GILELGILNAVGLHPMKTRD---GRGTSDTYCVAKYGHKWVRTRTLVDNLSPKYNEQYTWEVFD-PATVLTVGVFDNSQL  671 (1005)
Q Consensus       596 g~l~v~i~~a~~L~~~~~~~---~~~~~dpyv~~~~g~~~~~T~~~~~t~nP~wne~f~~~v~~-~~~~l~i~v~d~~~~  671 (1005)
                      |.|+|+|++|+||+..+...   ..|.+||||++.+++..++|++++++.||+|||.|.|.+.+ ....|.|+|||++..
T Consensus         1 g~l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~~~~~kT~~~~~t~~P~W~e~f~~~v~~~~~~~l~i~v~d~~~~   80 (121)
T cd08391           1 GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGAQTFKSKVIKENLNPKWNEVYEAVVDEVPGQELEIELFDEDPD   80 (121)
T ss_pred             CeEEEEEEEccCCcccccccccCCCCCcCCEEEEEECCEeEEccccCCCCCCcccceEEEEeCCCCCCEEEEEEEecCCC
Confidence            68999999999999765311   14689999999999999999999999999999999999976 578999999999742


Q ss_pred             CCCCCCCCCcccEEEEEEcccccCCCEEeeeEeeeecCCCCCceeeEEEEEEEE
Q 045058          672 GEKSNGNKDLKIGKVRIRISTLETGRIYTHSYPLLVLHPTGVKKMGELHLAIRF  725 (1005)
Q Consensus       672 ~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~G~i~l~~~~  725 (1005)
                             ++++||.+.++|+++..+.....||+|..     . ..|+|++++++
T Consensus        81 -------~~~~iG~~~i~l~~l~~~~~~~~w~~L~~-----~-~~G~~~~~~~~  121 (121)
T cd08391          81 -------KDDFLGRLSIDLGSVEKKGFIDEWLPLED-----V-KSGRLHLKLEW  121 (121)
T ss_pred             -------CCCcEEEEEEEHHHhcccCccceEEECcC-----C-CCceEEEEEeC
Confidence                   68999999999999988877889999962     1 45999998764

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular

>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2)

Probab=99.71  E-value=9.3e-17  Score=150.14  Aligned_cols=114  Identities=27%  Similarity=0.421  Sum_probs=96.3

Q ss_pred             EEEEEEEEeecCCCCCCCCCCCcEEEEEEC---CeEeeccccCCCCCCceeeEEEEEeccCccccceEEEEEEEeCCCCC
Q 045058            5 KLGVQVVGAHNLLPKDGKGSSSAFVELYFD---GQRFRTTIKENDLNPVWNESFYFNISDASKLHYLTLEAYIYNNIGDT   81 (1005)
Q Consensus         5 ~l~V~v~~a~~L~~~d~~g~~dpyv~v~~~---~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~~~   81 (1005)
                      .|.|+|++|++|+..+..|.+||||++++.   +.++||++++++.||+|||+|.|.+....   ...|.|+|||++. .
T Consensus         1 ~L~V~vi~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~vv~~t~nP~Wne~f~f~i~~~~---~~~l~v~v~d~d~-~   76 (119)
T cd04036           1 LLTVRVLRATNITKGDLLSTPDCYVELWLPTASDEKKRTKTIKNSINPVWNETFEFRIQSQV---KNVLELTVMDEDY-V   76 (119)
T ss_pred             CeEEEEEEeeCCCccCCCCCCCcEEEEEEcCCCCccCccceecCCCCCccceEEEEEeCccc---CCEEEEEEEECCC-C
Confidence            378999999999999888999999999986   35789999999999999999999986532   3579999999964 4


Q ss_pred             CCCcccEEEEEeCCcccCCCCceeeeEecccCCCcceeeeEEEEEEEE
Q 045058           82 NSRSFLGKVCLTGNSFVPLSDSVVLHYPLEKRGIFSHVRGELGLKVYI  129 (1005)
Q Consensus        82 ~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~  129 (1005)
                       +|++||++.+++.++..+. ....|++|.+.+     +|++++++.+
T Consensus        77 -~~~~iG~~~~~l~~l~~g~-~~~~~~~L~~~~-----~g~l~~~~~~  117 (119)
T cd04036          77 -MDDHLGTVLFDVSKLKLGE-KVRVTFSLNPQG-----KEELEVEFLL  117 (119)
T ss_pred             -CCcccEEEEEEHHHCCCCC-cEEEEEECCCCC-----CceEEEEEEe
Confidence             8999999999999987654 446899998653     6888888865

A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o

>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5

Probab=99.71  E-value=8e-17  Score=151.12  Aligned_cols=106  Identities=16%  Similarity=0.253  Sum_probs=91.3

Q ss_pred             CcceEEEEEEEEecCCCCCCCCCCCCCCCcEEEEEEC-----CEEEEeeeccCCCCceeccEEEEEEeC---CCceEEEE
Q 045058          593 PSIGILELGILNAVGLHPMKTRDGRGTSDTYCVAKYG-----HKWVRTRTLVDNLSPKYNEQYTWEVFD---PATVLTVG  664 (1005)
Q Consensus       593 ~~~g~l~v~i~~a~~L~~~~~~~~~~~~dpyv~~~~g-----~~~~~T~~~~~t~nP~wne~f~~~v~~---~~~~l~i~  664 (1005)
                      +..|.|.|.|++|+||++.+  ...|.+||||++.+.     ....||+++++++||+|||+|.|++..   ....|.|+
T Consensus        12 ~~~~~L~V~Vi~a~~L~~~~--~~~~~~DpyVkv~l~p~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~l~~~~L~~~   89 (125)
T cd04029          12 YKTQSLNVHVKECRNLAYGD--EAKKRSNPYVKTYLLPDKSRQSKRKTSIKRNTTNPVYNETLKYSISHSQLETRTLQLS   89 (125)
T ss_pred             CCCCeEEEEEEEecCCCccC--CCCCCCCcEEEEEEEcCCccccceEeeeeeCCCCCcccceEEEECCHHHhCCCEEEEE
Confidence            45689999999999999754  235789999999983     234799999999999999999999865   35689999


Q ss_pred             EEeCCCcCCCCCCCCCcccEEEEEEcccccCCCEEeeeEeee
Q 045058          665 VFDNSQLGEKSNGNKDLKIGKVRIRISTLETGRIYTHSYPLL  706 (1005)
Q Consensus       665 v~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~  706 (1005)
                      |||++.++      ++++||.+.|+|.++......+.||||.
T Consensus        90 V~d~~~~~------~~~~lG~~~i~l~~~~~~~~~~~w~~l~  125 (125)
T cd04029          90 VWHYDRFG------RNTFLGEVEIPLDSWNFDSQHEECLPLH  125 (125)
T ss_pred             EEECCCCC------CCcEEEEEEEeCCcccccCCcccEEECc
Confidence            99999766      8999999999999999888889999983

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2

>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins

Probab=99.71  E-value=1.1e-16  Score=150.60  Aligned_cols=115  Identities=27%  Similarity=0.420  Sum_probs=98.0

Q ss_pred             cEEEEEEEEeecCCCCCC------CCCCCcEEEEEECCeEeeccccCCCCCCceeeEEEEEeccCccccceEEEEEEEeC
Q 045058            4 LKLGVQVVGAHNLLPKDG------KGSSSAFVELYFDGQRFRTTIKENDLNPVWNESFYFNISDASKLHYLTLEAYIYNN   77 (1005)
Q Consensus         4 ~~l~V~v~~a~~L~~~d~------~g~~dpyv~v~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~   77 (1005)
                      |.|+|+|++|+||+.++.      .|.+||||+|+++++.++|+++++++||+|||+|.|.+....   ...|.|+|||+
T Consensus         1 g~l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~~~~~kT~~~~~t~~P~W~e~f~~~v~~~~---~~~l~i~v~d~   77 (121)
T cd08391           1 GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGAQTFKSKVIKENLNPKWNEVYEAVVDEVP---GQELEIELFDE   77 (121)
T ss_pred             CeEEEEEEEccCCcccccccccCCCCCcCCEEEEEECCEeEEccccCCCCCCcccceEEEEeCCCC---CCEEEEEEEec
Confidence            579999999999998875      368999999999999999999999999999999999986532   36899999998


Q ss_pred             CCCCCCCcccEEEEEeCCcccCCCCceeeeEecccCCCcceeeeEEEEEEEE
Q 045058           78 IGDTNSRSFLGKVCLTGNSFVPLSDSVVLHYPLEKRGIFSHVRGELGLKVYI  129 (1005)
Q Consensus        78 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~  129 (1005)
                      +. . ++++||++.+++.++...+. ...||+|.+.     .+|+|++.+.|
T Consensus        78 ~~-~-~~~~iG~~~i~l~~l~~~~~-~~~w~~L~~~-----~~G~~~~~~~~  121 (121)
T cd08391          78 DP-D-KDDFLGRLSIDLGSVEKKGF-IDEWLPLEDV-----KSGRLHLKLEW  121 (121)
T ss_pred             CC-C-CCCcEEEEEEEHHHhcccCc-cceEEECcCC-----CCceEEEEEeC
Confidence            54 4 89999999999999876554 4689999764     36999998754

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular

>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins

Probab=99.71  E-value=6.5e-17  Score=153.70  Aligned_cols=104  Identities=23%  Similarity=0.366  Sum_probs=90.0

Q ss_pred             eEEEEEEEEecCCCCCCCCCCCCCCCcEEEEEE--CC---EEEEeeeccCCCCceeccEEEEEEeCCCceEEEEEE-eCC
Q 045058          596 GILELGILNAVGLHPMKTRDGRGTSDTYCVAKY--GH---KWVRTRTLVDNLSPKYNEQYTWEVFDPATVLTVGVF-DNS  669 (1005)
Q Consensus       596 g~l~v~i~~a~~L~~~~~~~~~~~~dpyv~~~~--g~---~~~~T~~~~~t~nP~wne~f~~~v~~~~~~l~i~v~-d~~  669 (1005)
                      |.|.|+|++|+||.+.+  +..|.+||||++++  ++   .+.||+++++|+||+|||+|.|++......|.|+|| |++
T Consensus        29 ~~L~V~Vi~ArnL~~~~--~~~g~sDPYVKv~Llp~~~~~~k~KT~v~kktlnPvfNE~F~f~v~l~~~~L~v~V~~d~~  106 (146)
T cd04028          29 GQLEVEVIRARGLVQKP--GSKVLPAPYVKVYLLEGKKCIAKKKTKIARKTLDPLYQQQLVFDVSPTGKTLQVIVWGDYG  106 (146)
T ss_pred             CEEEEEEEEeeCCCccc--CCCCCcCCeEEEEEECCCccccceeceecCCCCCCccCCeEEEEEcCCCCEEEEEEEeCCC
Confidence            88999999999999753  23678999999999  33   267999999999999999999999866779999999 566


Q ss_pred             CcCCCCCCCCCcccEEEEEEcccccCCCEEeeeEeeee
Q 045058          670 QLGEKSNGNKDLKIGKVRIRISTLETGRIYTHSYPLLV  707 (1005)
Q Consensus       670 ~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~  707 (1005)
                      .+.      ++++||.+.|+|+++..+.....||+|..
T Consensus       107 ~~~------~~~~iG~~~i~L~~l~~~~~~~~Wy~L~~  138 (146)
T cd04028         107 RMD------KKVFMGVAQILLDDLDLSNLVIGWYKLFP  138 (146)
T ss_pred             CCC------CCceEEEEEEEcccccCCCCceeEEecCC
Confidence            544      89999999999999988777789999973

RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as

>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3

Probab=99.71  E-value=6.3e-17  Score=151.93  Aligned_cols=107  Identities=22%  Similarity=0.368  Sum_probs=90.3

Q ss_pred             CcEEEEEEEEeecCCCCCCC-CCCCcEEEEEEC-----CeEeeccccCCCCCCceeeEEEEEeccCccccceEEEEEEEe
Q 045058            3 NLKLGVQVVGAHNLLPKDGK-GSSSAFVELYFD-----GQRFRTTIKENDLNPVWNESFYFNISDASKLHYLTLEAYIYN   76 (1005)
Q Consensus         3 ~~~l~V~v~~a~~L~~~d~~-g~~dpyv~v~~~-----~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d   76 (1005)
                      .+.|.|+|++|+||..++.. |.+||||+|++.     ..++||+++++++||+|||+|.|.+... .+....|.|.|||
T Consensus        14 ~~~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~~~~~~k~kT~v~~~t~nPvfNE~F~f~v~~~-~l~~~~L~v~V~~   92 (128)
T cd08392          14 TSCLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKSHNSKRKTAVKKGTVNPVFNETLKYVVEAD-LLSSRQLQVSVWH   92 (128)
T ss_pred             CCEEEEEEEecCCCCccCCCCCCCCeEEEEEEEeCCcccceeecccccCCCCCccceEEEEEcCHH-HhCCcEEEEEEEe
Confidence            47899999999999999875 899999999984     2378999999999999999999998653 3556799999999


Q ss_pred             CCCCCCCCcccEEEEEeCCcccCC--CCceeeeEecc
Q 045058           77 NIGDTNSRSFLGKVCLTGNSFVPL--SDSVVLHYPLE  111 (1005)
Q Consensus        77 ~~~~~~~d~~lG~~~i~l~~l~~~--~~~~~~w~~L~  111 (1005)
                      ++. .+++++||++.|+|.++...  ++....||+|.
T Consensus        93 ~~~-~~~~~~lG~~~i~L~~~~~~~~~~~~~~W~~l~  128 (128)
T cd08392          93 SRT-LKRRVFLGEVLIPLADWDFEDTDSQRFLWYPLN  128 (128)
T ss_pred             CCC-CcCcceEEEEEEEcCCcccCCCCccccceEECc
Confidence            964 46899999999999998544  34556899983

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids

>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins

Probab=99.71  E-value=7.9e-17  Score=148.15  Aligned_cols=100  Identities=19%  Similarity=0.250  Sum_probs=86.5

Q ss_pred             EEEEEEEEecCCCCCCCCCCCCCCCcEEEEEE-C----C--EEEEeeeccCCCCceeccEEEEEEeCC----CceEEEEE
Q 045058          597 ILELGILNAVGLHPMKTRDGRGTSDTYCVAKY-G----H--KWVRTRTLVDNLSPKYNEQYTWEVFDP----ATVLTVGV  665 (1005)
Q Consensus       597 ~l~v~i~~a~~L~~~~~~~~~~~~dpyv~~~~-g----~--~~~~T~~~~~t~nP~wne~f~~~v~~~----~~~l~i~v  665 (1005)
                      .|+|+|++|++|+..+    .|.+||||+|.+ |    .  ++++|+++.+++||+|||+|.|.+...    ...|.|.|
T Consensus         1 kL~V~Vi~A~~L~~~d----~g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V   76 (120)
T cd08395           1 KVTVKVVAANDLKWQT----TGMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFILGNEDDPESYELHICV   76 (120)
T ss_pred             CEEEEEEECcCCCccc----CCCCCCEEEEEEecCCCcccccEeeeEEecCCCCCccCcEEEEEeeCcCCCceeEEEEEE
Confidence            4899999999998653    488999999997 4    2  346899999999999999999999742    35799999


Q ss_pred             EeCCCcCCCCCCCCCcccEEEEEEcccccCCCEEeeeEeee
Q 045058          666 FDNSQLGEKSNGNKDLKIGKVRIRISTLETGRIYTHSYPLL  706 (1005)
Q Consensus       666 ~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~  706 (1005)
                      ||++..+      +|++||++.+||+++..++....|++|.
T Consensus        77 ~D~d~~~------~dd~IG~~~l~l~~~~~~~~~~~w~~L~  111 (120)
T cd08395          77 KDYCFAR------DDRLVGVTVLQLRDIAQAGSCACWLPLG  111 (120)
T ss_pred             EEecccC------CCCEEEEEEEEHHHCcCCCcEEEEEECc
Confidence            9998654      7899999999999999988889999996

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi

>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2

Probab=99.71  E-value=5.7e-17  Score=152.38  Aligned_cols=106  Identities=26%  Similarity=0.402  Sum_probs=89.8

Q ss_pred             CcEEEEEEEEeecCCCCCCC-CCCCcEEEEEEC-----CeEeeccccCCCCCCceeeEEEEEeccCccccceEEEEEEEe
Q 045058            3 NLKLGVQVVGAHNLLPKDGK-GSSSAFVELYFD-----GQRFRTTIKENDLNPVWNESFYFNISDASKLHYLTLEAYIYN   76 (1005)
Q Consensus         3 ~~~l~V~v~~a~~L~~~d~~-g~~dpyv~v~~~-----~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d   76 (1005)
                      .+.|.|+|++|+||+.++.. |.+||||+|++.     ..++||+++++++||+|||+|.|.+...+ +....|.|.|||
T Consensus        14 ~~~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p~~~~~~~~kT~v~~~t~nP~~nE~f~f~v~~~~-l~~~~L~~~V~d   92 (125)
T cd08393          14 LRELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKRKTSVKKKTLNPVFNETLRYKVEREE-LPTRVLNLSVWH   92 (125)
T ss_pred             CCEEEEEEEEeCCCCCcCCCCCCCCcEEEEEEEcCCCccccccCccCcCCCCCccCceEEEECCHHH-hCCCEEEEEEEe
Confidence            36899999999999999975 899999999983     23689999999999999999999986432 555789999999


Q ss_pred             CCCCCCCCcccEEEEEeCCcccCCCCceeeeEecc
Q 045058           77 NIGDTNSRSFLGKVCLTGNSFVPLSDSVVLHYPLE  111 (1005)
Q Consensus        77 ~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~  111 (1005)
                      ++. .+++++||++.++|.++...+. ...||+|+
T Consensus        93 ~~~-~~~~~~iG~~~i~L~~~~~~~~-~~~W~~L~  125 (125)
T cd08393          93 RDS-LGRNSFLGEVEVDLGSWDWSNT-QPTWYPLQ  125 (125)
T ss_pred             CCC-CCCCcEeEEEEEecCccccCCC-CcceEECc
Confidence            964 5689999999999999976643 35799984

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety

>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins

Probab=99.70  E-value=1.2e-16  Score=151.79  Aligned_cols=107  Identities=21%  Similarity=0.363  Sum_probs=88.8

Q ss_pred             CcEEEEEEEEeecCCCCC-CCCCCCcEEEEEEC--C---eEeeccccCCCCCCceeeEEEEEeccCccccceEEEEEEEe
Q 045058            3 NLKLGVQVVGAHNLLPKD-GKGSSSAFVELYFD--G---QRFRTTIKENDLNPVWNESFYFNISDASKLHYLTLEAYIYN   76 (1005)
Q Consensus         3 ~~~l~V~v~~a~~L~~~d-~~g~~dpyv~v~~~--~---~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d   76 (1005)
                      .+.|.|+|++|+||..++ ..|.+||||++++.  +   .++||+++++|+||+|||+|.|.+.    .....|.|+||+
T Consensus        28 ~~~L~V~Vi~ArnL~~~~~~~g~sDPYVKv~Llp~~~~~~k~KT~v~kktlnPvfNE~F~f~v~----l~~~~L~v~V~~  103 (146)
T cd04028          28 KGQLEVEVIRARGLVQKPGSKVLPAPYVKVYLLEGKKCIAKKKTKIARKTLDPLYQQQLVFDVS----PTGKTLQVIVWG  103 (146)
T ss_pred             CCEEEEEEEEeeCCCcccCCCCCcCCeEEEEEECCCccccceeceecCCCCCCccCCeEEEEEc----CCCCEEEEEEEe
Confidence            478999999999999875 57889999999983  3   3789999999999999999999996    335689999995


Q ss_pred             CCCCCCCCcccEEEEEeCCcccCCCCceeeeEecccCC
Q 045058           77 NIGDTNSRSFLGKVCLTGNSFVPLSDSVVLHYPLEKRG  114 (1005)
Q Consensus        77 ~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~  114 (1005)
                      +...+.+++|||++.|+|.++..... ...||+|.+..
T Consensus       104 d~~~~~~~~~iG~~~i~L~~l~~~~~-~~~Wy~L~~~~  140 (146)
T cd04028         104 DYGRMDKKVFMGVAQILLDDLDLSNL-VIGWYKLFPTS  140 (146)
T ss_pred             CCCCCCCCceEEEEEEEcccccCCCC-ceeEEecCCcc
Confidence            32345689999999999999865444 35799998764

RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as

>PF11696 DUF3292: Protein of unknown function (DUF3292); InterPro: IPR021709 This eukaryotic family of proteins has no known function

Probab=99.70  E-value=1.1e-16  Score=179.78  Aligned_cols=205  Identities=21%  Similarity=0.312  Sum_probs=146.8

Q ss_pred             hccCCCcccchhhhHHHHHHHHH-HHHHHHHHHHHhhcccccCCchhHHHHHHHHHHHHhcccchHHHHHHHHHHHhhh-
Q 045058          786 MSDVDSHLWSMRRSKANFFRLMT-VFSGLFAVGKWFADICMWKNPITTVLVHVLYLMLACFPELILPTVFLYMFLIGIW-  863 (1005)
Q Consensus       786 ~~~~d~~~fs~~~~k~n~~rl~~-~~~~~~~~~~~~~~l~~W~~p~~t~~~~~~~~~~~~~~~l~~p~~~l~~~~~~~~-  863 (1005)
                      |.-++...||..++++|++||+. ++-.+..+.+.+.+|++|++|+||..+|++|+++ |+.++++|+++.+++.+.++ 
T Consensus        80 Ln~a~~e~FspdkLRa~lERlY~tv~v~~~~~~khi~RLrSW~eprRT~~fc~vYf~a-W~~dll~p~~~~~L~~li~~P  158 (642)
T PF11696_consen   80 LNIAEDEEFSPDKLRANLERLYMTVVVGLAAFIKHIARLRSWREPRRTAAFCAVYFIA-WLLDLLVPAFFAFLIALILSP  158 (642)
T ss_pred             ccccccccCChHHHHHHhHhheeehHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhcCc
Confidence            34567889999999999999999 8889999999999999999999999999999988 78899999998877776664 


Q ss_pred             ---ccccCCCCCCCCCcccccc-----------c--------------------------------------CCCCCCCC
Q 045058          864 ---NYRYRPRYPPHMNIKISQA-----------E--------------------------------------AVHPDELD  891 (1005)
Q Consensus       864 ---~~~~~~~~~~~~~~~~s~~-----------~--------------------------------------~~~~~~~~  891 (1005)
                         .++|+|.+++.+|......           +                                      ...+++..
T Consensus       159 ~~r~~lFPpap~alvd~~tgg~qkP~aGvLgs~dS~TGAPE~~KGEAvEqEAsNfV~siasvav~saaGK~~q~~p~~~~  238 (642)
T PF11696_consen  159 PARSILFPPAPPALVDSKTGGVQKPKAGVLGSDDSVTGAPENHKGEAVEQEASNFVNSIASVAVSSAAGKHPQGDPDDDP  238 (642)
T ss_pred             ccccccCCCCCcccccCCCCCccccccccccccccccCCCccccchHHHHHHHHHHHHHHHHHHHhhccCCCCCCcccCC
Confidence               7789999888887442111           0                                      00011110


Q ss_pred             C-CCCCCCC---------------CC---ChHHHHH-HHHHHHhhhhhHHHHHHHHHhHHHHHhhccccCCch-------
Q 045058          892 E-EFDTFPT---------------SR---SPELVRM-RYDRLRSVAGRIQTVVGDVATQGERLQALISWRDPR-------  944 (1005)
Q Consensus       892 ~-e~~~~~~---------------~~---~~~~~~~-~~~~l~~~~~~vQ~~l~~~a~~~e~~~~l~~w~~p~-------  944 (1005)
                      + +...++.               .+   ..+..++ .-.++-..+..+|++|++++|.+||+-|+|+.+.||       
T Consensus       239 ~~~~~pd~~~v~~~~adak~~a~g~~~~~~~DkTk~Pm~~~v~~~~~p~mh~l~di~Dt~ERfaNaLSPTpPFp~~~~Rl  318 (642)
T PF11696_consen  239 EEDSEPDPTDVATKAADAKDKAAGEKPKPSHDKTKQPMKEAVWKKMRPIMHMLGDITDTWERFANALSPTPPFPRHTPRL  318 (642)
T ss_pred             ccCCCCChhhhhHhhhhhhhhccCCCCCCccchhhchHHHHHHHhhhhHHHHHhhHHHHHHHHhhccCCCCCCCCccHHH
Confidence            0 0000110               00   0011111 112345568899999999999999999999999999       


Q ss_pred             -hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCccCCCCCCchhhhhhc
Q 045058          945 -ATAIFITFCLVAALVLFLTPFQVIAALAGFWVMRHPRFRRRLPSVPINFFRR  996 (1005)
Q Consensus       945 -~t~~~~~~~~~~~~v~~~iP~r~i~l~~g~~~~~~P~f~~~~~~~~~~~~~r  996 (1005)
                       +..+++.+++++.++..++-.|.+.+++|+.     .|.+++..+.++||+|
T Consensus       319 RLa~~l~p~~l~Sl~~ssy~~~K~~tF~~Gf~-----FFGdPiI~r~~~~Lnr  366 (642)
T PF11696_consen  319 RLAAILAPLLLASLFVSSYMFVKGTTFGFGFG-----FFGDPIITRGIDYLNR  366 (642)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHhhhHH-----hhccHHHHHHHHHHhc
Confidence             4556677777777777788899999999998     5555544444444443

>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin

Probab=99.70  E-value=2e-16  Score=151.16  Aligned_cols=124  Identities=19%  Similarity=0.329  Sum_probs=99.5

Q ss_pred             cEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEeeccccCCCCCCceeeEEEEEeccC----ccc--cceEEEEEEEeC
Q 045058            4 LKLGVQVVGAHNLLPKDGKGSSSAFVELYFDGQRFRTTIKENDLNPVWNESFYFNISDA----SKL--HYLTLEAYIYNN   77 (1005)
Q Consensus         4 ~~l~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~----~~~--~~~~l~v~V~d~   77 (1005)
                      .+|+|+|++|++|..+|..|.+||||+|++++++++|+++++++||+|||+|.|.+...    +..  ....|.|+|||+
T Consensus         1 ~~l~v~V~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V~d~   80 (135)
T cd04017           1 FQLRAYIYQARDLLAADKSGLSDPFARVSFLNQSQETEVIKETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVELFDQ   80 (135)
T ss_pred             CEEEEEEEEeecCcCCCCCCCCCCEEEEEECCeeeEeeeEcCCCCCccCcEEEEeeeeccCChHHhhcCCCEEEEEEEeC
Confidence            36899999999999999999999999999999999999999999999999999985321    111  124789999999


Q ss_pred             CCCCCCCcccEEEEE-eCCcccC--CCCceeeeEecccCCCcceeeeEEEEEEEEec
Q 045058           78 IGDTNSRSFLGKVCL-TGNSFVP--LSDSVVLHYPLEKRGIFSHVRGELGLKVYITD  131 (1005)
Q Consensus        78 ~~~~~~d~~lG~~~i-~l~~l~~--~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~~~  131 (1005)
                      +. .++|++||++.+ ++..+..  .......|++|.+.+   ..+|+|.+++.+..
T Consensus        81 d~-~~~d~~iG~~~i~~~~~~~~~~~~~~~~~W~~L~~~~---~~~Geil~~~~~~~  133 (135)
T cd04017          81 DS-VGKDEFLGRSVAKPLVKLDLEEDFPPKLQWFPIYKGG---QSAGELLAAFELIE  133 (135)
T ss_pred             cC-CCCCccceEEEeeeeeecccCCCCCCCceEEEeecCC---CchhheeEEeEEEE
Confidence            65 468999999997 4444432  223445899998654   46899999998875

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme

>cd08680 C2_Kibra C2 domain found in Human protein Kibra

Probab=99.70  E-value=8.6e-17  Score=149.41  Aligned_cols=106  Identities=25%  Similarity=0.249  Sum_probs=91.4

Q ss_pred             CcEEEEEEEEeecCCCCCCCCCCCcEEEEEEC------CeEeeccccCCCCCCceeeEEEEEeccCccccceEEEEEEEe
Q 045058            3 NLKLGVQVVGAHNLLPKDGKGSSSAFVELYFD------GQRFRTTIKENDLNPVWNESFYFNISDASKLHYLTLEAYIYN   76 (1005)
Q Consensus         3 ~~~l~V~v~~a~~L~~~d~~g~~dpyv~v~~~------~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d   76 (1005)
                      .+.|.|+|++|+||..++..|.+||||+|++-      +.++||+++++++||+|||+|.|.+... .+....|.|.|||
T Consensus        13 ~~~L~V~V~~arnL~~~~~~~~~dpyVKv~Llp~~~~~~~~~kT~v~~~t~nPvfnE~F~f~v~~~-~L~~~~L~~~V~~   91 (124)
T cd08680          13 DSSLVISVEQLRNLSALSIPENSKVYVRVALLPCSSSTSCLFRTKALEDQDKPVFNEVFRVPISST-KLYQKTLQVDVCS   91 (124)
T ss_pred             CCEEEEEEeEecCCcccccCCCCCeEEEEEEccCCCCCCceEEcCccCCCCCCccccEEEEECCHH-HhhcCEEEEEEEe
Confidence            47899999999999999888999999999972      2478999999999999999999998643 4677899999999


Q ss_pred             CCCCCCCCcccEEEEEeCCcccCCCCceeeeEec
Q 045058           77 NIGDTNSRSFLGKVCLTGNSFVPLSDSVVLHYPL  110 (1005)
Q Consensus        77 ~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L  110 (1005)
                      ++ ..+++++||++.|+|.++...+.....||+|
T Consensus        92 ~~-~~~~~~~lG~~~i~L~~~~~~~~~~~~Wy~l  124 (124)
T cd08680          92 VG-PDQQEECLGGAQISLADFESSEEMSTKWYNL  124 (124)
T ss_pred             CC-CCCceeEEEEEEEEhhhccCCCccccccccC
Confidence            96 4568999999999999996665555679986

Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom

>cd04046 C2_Calpain C2 domain present in Calpain proteins

Probab=99.70  E-value=3.8e-16  Score=147.27  Aligned_cols=120  Identities=20%  Similarity=0.303  Sum_probs=100.1

Q ss_pred             ceEEEEEEEEecCCCCCCCCCCCCCCCcEEEEEECCEEEEeeeccCCCCceeccEEEEEEeCCCceEEEEEEeCCCcCCC
Q 045058          595 IGILELGILNAVGLHPMKTRDGRGTSDTYCVAKYGHKWVRTRTLVDNLSPKYNEQYTWEVFDPATVLTVGVFDNSQLGEK  674 (1005)
Q Consensus       595 ~g~l~v~i~~a~~L~~~~~~~~~~~~dpyv~~~~g~~~~~T~~~~~t~nP~wne~f~~~v~~~~~~l~i~v~d~~~~~~~  674 (1005)
                      .+.|+|+|++|++|...   +..|.+||||++.++++.++|++++++.||+|||.|.|.+.++...|.|+|||++.+   
T Consensus         2 ~~~~~V~v~~A~~L~~~---d~~g~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~i~V~d~~~~---   75 (126)
T cd04046           2 QVVTQVHVHSAEGLSKQ---DSGGGADPYVIIKCEGESVRSPVQKDTLSPEFDTQAIFYRKKPRSPIKIQVWNSNLL---   75 (126)
T ss_pred             cEEEEEEEEeCcCCCCC---CCCCCcCccEEEEECCEEEEeCccCCCCCCcccceEEEEecCCCCEEEEEEEECCCC---
Confidence            37899999999999964   457889999999999999999999999999999999999988888999999999754   


Q ss_pred             CCCCCCcccEEEEEEcccccCCCEEeeeEeeeecCC-CCCceeeEEEEEEEEe
Q 045058          675 SNGNKDLKIGKVRIRISTLETGRIYTHSYPLLVLHP-TGVKKMGELHLAIRFS  726 (1005)
Q Consensus       675 ~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~-~~~~~~G~i~l~~~~~  726 (1005)
                          +|++||.+.++++.+..+.  .++|+|..... ...+..|+|.+++.+.
T Consensus        76 ----~d~~lG~~~~~l~~~~~~~--~~~~~l~~~~~~~~~~~~G~i~~~~~~~  122 (126)
T cd04046          76 ----CDEFLGQATLSADPNDSQT--LRTLPLRKRGRDAAGEVPGTISVKVTSS  122 (126)
T ss_pred             ----CCCceEEEEEecccCCCcC--ceEEEcccCCCCCCCCCCCEEEEEEEEc
Confidence                4799999999998865443  58899963221 2233469999998763

A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic

>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon

Probab=99.69  E-value=3.3e-16  Score=149.28  Aligned_cols=118  Identities=23%  Similarity=0.374  Sum_probs=99.7

Q ss_pred             CCCcEEEEEEEEeecCCCCCCC----------CCCCcEEEEEECCeE-eeccccCCCCCCceeeEEEEEeccCccccceE
Q 045058            1 MRNLKLGVQVVGAHNLLPKDGK----------GSSSAFVELYFDGQR-FRTTIKENDLNPVWNESFYFNISDASKLHYLT   69 (1005)
Q Consensus         1 m~~~~l~V~v~~a~~L~~~d~~----------g~~dpyv~v~~~~~~-~~T~v~~~t~nP~Wne~f~f~v~~~~~~~~~~   69 (1005)
                      |-.+.|+|+|++|++|...+..          |.+||||+|.+++++ .+|+++++++||.|||+|.|.+.+.     ..
T Consensus         1 ~~~g~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~~~-----~~   75 (132)
T cd04014           1 MFTGTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVDDTHIGKTSTKPKTNSPVWNEEFTTEVHNG-----RN   75 (132)
T ss_pred             CcceEEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEECCEEEeEEeEcCCCCCCCcceeEEEEcCCC-----CE
Confidence            5678999999999999988752          689999999999865 6999999999999999999999632     58


Q ss_pred             EEEEEEeCCCCCCCCcccEEEEEeCCcccCC-CCceeeeEecccCCCcceeeeEEEEEEEEec
Q 045058           70 LEAYIYNNIGDTNSRSFLGKVCLTGNSFVPL-SDSVVLHYPLEKRGIFSHVRGELGLKVYITD  131 (1005)
Q Consensus        70 l~v~V~d~~~~~~~d~~lG~~~i~l~~l~~~-~~~~~~w~~L~~~~~~~~~~G~i~l~~~~~~  131 (1005)
                      |.|.|||++. .+.+++||++.++|.++... +...+.|++|++       +|+|++++.+..
T Consensus        76 l~~~v~d~~~-~~~~~~iG~~~i~l~~l~~~~~~~~~~w~~L~~-------~G~l~l~~~~~~  130 (132)
T cd04014          76 LELTVFHDAA-IGPDDFVANCTISFEDLIQRGSGSFDLWVDLEP-------QGKLHVKIELKG  130 (132)
T ss_pred             EEEEEEeCCC-CCCCceEEEEEEEhHHhcccCCCcccEEEEccC-------CcEEEEEEEEec
Confidence            9999999853 45889999999999998774 444568999963       589999998765

A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that

>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family

Probab=99.69  E-value=9.7e-17  Score=148.86  Aligned_cols=104  Identities=22%  Similarity=0.415  Sum_probs=86.7

Q ss_pred             CcEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eEeeccccCCCCCCceeeEEEEEeccCccccceEEEEEEEeC
Q 045058            3 NLKLGVQVVGAHNLLPKDGKGSSSAFVELYFDG-----QRFRTTIKENDLNPVWNESFYFNISDASKLHYLTLEAYIYNN   77 (1005)
Q Consensus         3 ~~~l~V~v~~a~~L~~~d~~g~~dpyv~v~~~~-----~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~   77 (1005)
                      .+.|.|+|++|+||..++ .|.+||||+|++..     .++||+++++++||+|||+|.|.+...+ . ...|.|.|||+
T Consensus        11 ~~~L~V~Vi~ar~L~~~~-~g~~dpYVkv~l~p~~~~~~~~kT~v~~~t~~P~~nE~F~f~v~~~~-~-~~~l~v~V~~~   87 (119)
T cd08685          11 NRKLTLHVLEAKGLRSTN-SGTCNSYVKISLSPDKEVRFRQKTSTVPDSANPLFHETFSFDVNERD-Y-QKRLLVTVWNK   87 (119)
T ss_pred             CCEEEEEEEEEECCCCCC-CCCCCeeEEEEEEeCCCCcceEeCccccCCCCCccccEEEEEcChHH-h-CCEEEEEEECC
Confidence            578999999999999998 78999999999853     3679999999999999999999986533 2 24688999998


Q ss_pred             CCCCCCCcccEEEEEeCCcccCCCCceeeeEec
Q 045058           78 IGDTNSRSFLGKVCLTGNSFVPLSDSVVLHYPL  110 (1005)
Q Consensus        78 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L  110 (1005)
                      +....++++||++.|++.++.. +.....||.|
T Consensus        88 ~~~~~~~~~lG~~~i~l~~~~~-~~~~~~Wy~l  119 (119)
T cd08685          88 LSKSRDSGLLGCMSFGVKSIVN-QKEISGWYYL  119 (119)
T ss_pred             CCCcCCCEEEEEEEecHHHhcc-CccccceEeC
Confidence            6544457999999999999975 4434689986

This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho

>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5

Probab=99.69  E-value=1.5e-16  Score=149.38  Aligned_cols=107  Identities=30%  Similarity=0.393  Sum_probs=89.8

Q ss_pred             CCcEEEEEEEEeecCCCCCC-CCCCCcEEEEEEC-----CeEeeccccCCCCCCceeeEEEEEeccCccccceEEEEEEE
Q 045058            2 RNLKLGVQVVGAHNLLPKDG-KGSSSAFVELYFD-----GQRFRTTIKENDLNPVWNESFYFNISDASKLHYLTLEAYIY   75 (1005)
Q Consensus         2 ~~~~l~V~v~~a~~L~~~d~-~g~~dpyv~v~~~-----~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~   75 (1005)
                      ..+.|.|+|++|+||..++. .|.+||||+|++.     ..++||+++++++||+|||+|.|.+...+ +....|.|.||
T Consensus        13 ~~~~L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~p~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~-l~~~~L~~~V~   91 (125)
T cd04029          13 KTQSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKSRQSKRKTSIKRNTTNPVYNETLKYSISHSQ-LETRTLQLSVW   91 (125)
T ss_pred             CCCeEEEEEEEecCCCccCCCCCCCCcEEEEEEEcCCccccceEeeeeeCCCCCcccceEEEECCHHH-hCCCEEEEEEE
Confidence            35789999999999998875 5789999999984     23689999999999999999999986532 45568999999


Q ss_pred             eCCCCCCCCcccEEEEEeCCcccCCCCceeeeEecc
Q 045058           76 NNIGDTNSRSFLGKVCLTGNSFVPLSDSVVLHYPLE  111 (1005)
Q Consensus        76 d~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~  111 (1005)
                      |++. .+++++||++.+++.++..... ...||+|.
T Consensus        92 d~~~-~~~~~~lG~~~i~l~~~~~~~~-~~~w~~l~  125 (125)
T cd04029          92 HYDR-FGRNTFLGEVEIPLDSWNFDSQ-HEECLPLH  125 (125)
T ss_pred             ECCC-CCCCcEEEEEEEeCCcccccCC-cccEEECc
Confidence            9964 5689999999999999977755 35799984

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2

>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD)

Probab=99.69  E-value=2e-16  Score=143.90  Aligned_cols=96  Identities=19%  Similarity=0.330  Sum_probs=84.0

Q ss_pred             eEEEEEEEEecCCCCCCCCC-CCCCCCcEEEEEECCEEEEeeeccCCCCceeccEEEEEEeCC--CceEEEEEEeCCCcC
Q 045058          596 GILELGILNAVGLHPMKTRD-GRGTSDTYCVAKYGHKWVRTRTLVDNLSPKYNEQYTWEVFDP--ATVLTVGVFDNSQLG  672 (1005)
Q Consensus       596 g~l~v~i~~a~~L~~~~~~~-~~~~~dpyv~~~~g~~~~~T~~~~~t~nP~wne~f~~~v~~~--~~~l~i~v~d~~~~~  672 (1005)
                      |.|.|+|++|+||++.+... ..+.+||||++.++++.+||+++++++||+|||.|.|.+.+.  ...|.|+|||++.++
T Consensus         1 g~l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~~~~~~kT~v~~~t~nPvWne~f~f~v~~~~~~~~L~~~V~D~d~~~   80 (108)
T cd04039           1 GVVFMEIKSITDLPPLKNMTRTGFDMDPFVIISFGRRVFRTSWRRHTLNPVFNERLAFEVYPHEKNFDIQFKVLDKDKFS   80 (108)
T ss_pred             CEEEEEEEeeeCCCCccccCCCCCccCceEEEEECCEeEeeeeecCCCCCcccceEEEEEeCccCCCEEEEEEEECCCCC
Confidence            78999999999999876421 234589999999999999999999999999999999999763  458999999999776


Q ss_pred             CCCCCCCCcccEEEEEEcccccCCC
Q 045058          673 EKSNGNKDLKIGKVRIRISTLETGR  697 (1005)
Q Consensus       673 ~~~~~~~d~~lG~~~i~l~~l~~~~  697 (1005)
                            .|++||++.++|++|..+.
T Consensus        81 ------~dd~IG~~~l~L~~l~~~~   99 (108)
T cd04039          81 ------FNDYVATGSLSVQELLNAA   99 (108)
T ss_pred             ------CCcceEEEEEEHHHHHhhC
Confidence                  8999999999999998764

PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM

>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins

Probab=99.69  E-value=2.3e-16  Score=149.09  Aligned_cols=120  Identities=30%  Similarity=0.374  Sum_probs=99.8

Q ss_pred             ceEEEEEEEEecCCCCCCCCCCCCCCCcEEEEEECC--EEEEeeeccCCCCceeccEEEEEEeCCCceEEEEEEeCCCcC
Q 045058          595 IGILELGILNAVGLHPMKTRDGRGTSDTYCVAKYGH--KWVRTRTLVDNLSPKYNEQYTWEVFDPATVLTVGVFDNSQLG  672 (1005)
Q Consensus       595 ~g~l~v~i~~a~~L~~~~~~~~~~~~dpyv~~~~g~--~~~~T~~~~~t~nP~wne~f~~~v~~~~~~l~i~v~d~~~~~  672 (1005)
                      +|.|+|+|++|+||+..+  ...+.+||||++.+++  ...+|+++.++.||.|||.|.|.+......|.|+|||++..+
T Consensus         1 ~g~l~v~v~~a~~L~~~~--~~~~~~dpyv~v~~~~~~~~~kT~~~~~~~~P~Wne~~~~~v~~~~~~l~~~v~d~~~~~   78 (124)
T cd04044           1 IGVLAVTIKSARGLKGSD--IIGGTVDPYVTFSISNRRELARTKVKKDTSNPVWNETKYILVNSLTEPLNLTVYDFNDKR   78 (124)
T ss_pred             CeEEEEEEEcccCCCccc--ccCCCCCCeEEEEECCCCcceEeeeecCCCCCcceEEEEEEeCCCCCEEEEEEEecCCCC
Confidence            489999999999998532  2356789999999987  789999999999999999999999866889999999998655


Q ss_pred             CCCCCCCCcccEEEEEEcccccCCCEEee-eEeeeecCCCCCceeeEEEEEEEEe
Q 045058          673 EKSNGNKDLKIGKVRIRISTLETGRIYTH-SYPLLVLHPTGVKKMGELHLAIRFS  726 (1005)
Q Consensus       673 ~~~~~~~d~~lG~~~i~l~~l~~~~~~~~-~~~L~~~~~~~~~~~G~i~l~~~~~  726 (1005)
                            +|++||++.++|+++..+..... ++++.   .++ +..|+|++.++|-
T Consensus        79 ------~d~~iG~~~~~l~~l~~~~~~~~~~~~~~---~~~-k~~G~i~~~l~~~  123 (124)
T cd04044          79 ------KDKLIGTAEFDLSSLLQNPEQENLTKNLL---RNG-KPVGELNYDLRFF  123 (124)
T ss_pred             ------CCceeEEEEEEHHHhccCccccCcchhhh---cCC-ccceEEEEEEEeC
Confidence                  79999999999999988765543 44443   222 3469999999983

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins

Probab=99.69  E-value=2.1e-16  Score=144.01  Aligned_cols=98  Identities=16%  Similarity=0.160  Sum_probs=86.0

Q ss_pred             eEEEEEEEEecCCCCCCCCCCCCCCCcEEEEEECCEEEEeeeccCCCCceeccEEEEEEeCCCceEEEEEEeCCCcCCCC
Q 045058          596 GILELGILNAVGLHPMKTRDGRGTSDTYCVAKYGHKWVRTRTLVDNLSPKYNEQYTWEVFDPATVLTVGVFDNSQLGEKS  675 (1005)
Q Consensus       596 g~l~v~i~~a~~L~~~~~~~~~~~~dpyv~~~~g~~~~~T~~~~~t~nP~wne~f~~~v~~~~~~l~i~v~d~~~~~~~~  675 (1005)
                      |.|.|+|++|++|+.      .+..||||++++|+++.+|++++++ ||.|||.|.|.+.+....|.|+|||++.+    
T Consensus         2 ~~L~V~Vv~Ar~L~~------~~~~dPYV~Ik~g~~k~kT~v~~~~-nP~WnE~F~F~~~~~~~~L~v~V~dkd~~----   70 (127)
T cd08394           2 SLLCVLVKKAKLDGA------PDKFNTYVTLKVQNVKSTTIAVRGS-QPCWEQDFMFEINRLDLGLVIELWNKGLI----   70 (127)
T ss_pred             ceEEEEEEEeeCCCC------CCCCCCeEEEEECCEEeEeeECCCC-CCceeeEEEEEEcCCCCEEEEEEEeCCCc----
Confidence            689999999999973      2345899999999999999999884 99999999999988877899999999843    


Q ss_pred             CCCCCcccEEEEEEcccccCCCEE--eeeEeeee
Q 045058          676 NGNKDLKIGKVRIRISTLETGRIY--THSYPLLV  707 (1005)
Q Consensus       676 ~~~~d~~lG~~~i~l~~l~~~~~~--~~~~~L~~  707 (1005)
                         .||+||++.|+|+++..+...  ..||+|..
T Consensus        71 ---~DD~lG~v~i~L~~v~~~~~~~~~~Wy~L~~  101 (127)
T cd08394          71 ---WDTLVGTVWIPLSTIRQSNEEGPGEWLTLDS  101 (127)
T ss_pred             ---CCCceEEEEEEhHHcccCCCCCCCccEecCh
Confidence               699999999999998876544  78999973

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi

>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11

Probab=99.68  E-value=2.6e-16  Score=148.31  Aligned_cols=109  Identities=19%  Similarity=0.280  Sum_probs=89.8

Q ss_pred             CcEEEEEEEEeecCCCCCCC-CCCCcEEEEEEC---CeEeeccccCCCCCCceeeEEEEEeccCccccceEEEEEEEeCC
Q 045058            3 NLKLGVQVVGAHNLLPKDGK-GSSSAFVELYFD---GQRFRTTIKENDLNPVWNESFYFNISDASKLHYLTLEAYIYNNI   78 (1005)
Q Consensus         3 ~~~l~V~v~~a~~L~~~d~~-g~~dpyv~v~~~---~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~   78 (1005)
                      ...|.|+|++|+||+.++.. |.+||||+|++.   +++.||+++++++||+|||+|.|.....+.+....|.|.|||++
T Consensus        15 ~~~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~~~~~~kT~v~~~t~nP~wnE~F~f~~~~~~~~~~~~L~~~V~d~d   94 (128)
T cd08388          15 KKALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKEHKVKTRVLRKTRNPVYDETFTFYGIPYNQLQDLSLHFAVLSFD   94 (128)
T ss_pred             CCEEEEEEEEeECCCCCCCCCCCcCCEEEEEEeCCcCceeeccEEcCCCCCceeeEEEEcccCHHHhCCCEEEEEEEEcC
Confidence            47899999999999998876 899999999984   34789999999999999999999532223344568999999996


Q ss_pred             CCCCCCcccEEEEEeCCcccCC-CCceeeeEeccc
Q 045058           79 GDTNSRSFLGKVCLTGNSFVPL-SDSVVLHYPLEK  112 (1005)
Q Consensus        79 ~~~~~d~~lG~~~i~l~~l~~~-~~~~~~w~~L~~  112 (1005)
                      . .++|++||++.++|.++... +.....|++|++
T Consensus        95 ~-~~~d~~lG~~~i~L~~l~~~~~~~~~~~~~~~~  128 (128)
T cd08388          95 R-YSRDDVIGEVVCPLAGADLLNEGELLVSREIQP  128 (128)
T ss_pred             C-CCCCceeEEEEEeccccCCCCCceEEEEEeccC
Confidence            4 56899999999999998655 344678999864

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence

>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins

Probab=99.68  E-value=4.9e-16  Score=146.75  Aligned_cols=121  Identities=26%  Similarity=0.380  Sum_probs=98.0

Q ss_pred             EEEEEEEEecCCCCCCCCCCCCCCCcEEEEEECCEEEEeeeccCCCCceeccEEEEEEeCCCceEEEEEEeCCCcCCC--
Q 045058          597 ILELGILNAVGLHPMKTRDGRGTSDTYCVAKYGHKWVRTRTLVDNLSPKYNEQYTWEVFDPATVLTVGVFDNSQLGEK--  674 (1005)
Q Consensus       597 ~l~v~i~~a~~L~~~~~~~~~~~~dpyv~~~~g~~~~~T~~~~~t~nP~wne~f~~~v~~~~~~l~i~v~d~~~~~~~--  674 (1005)
                      .|+|+|++|++|+..   |..|.+||||++.+++...+|+++.+++||+|||.|.|.+..+...|.|+|||+|....+  
T Consensus         2 ~L~V~vi~a~~L~~~---d~~g~~DPyv~v~~~~~~~kT~~v~~t~~P~Wne~f~f~~~~~~~~l~i~v~d~d~~~~~~~   78 (127)
T cd04027           2 KISITVVCAQGLIAK---DKTGTSDPYVTVQVGKTKKRTKTIPQNLNPVWNEKFHFECHNSSDRIKVRVWDEDDDIKSRL   78 (127)
T ss_pred             eEEEEEEECcCCcCC---CCCCCcCcEEEEEECCEeeecceecCCCCCccceEEEEEecCCCCEEEEEEEECCCCccccc
Confidence            689999999999965   457789999999999999999999999999999999999977777999999999852100  


Q ss_pred             ---CCCCCCcccEEEEEEcccccCCCEEeeeEeeeecCCCCCceeeEEEEEE
Q 045058          675 ---SNGNKDLKIGKVRIRISTLETGRIYTHSYPLLVLHPTGVKKMGELHLAI  723 (1005)
Q Consensus       675 ---~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~G~i~l~~  723 (1005)
                         ....++++||.+.|++.++....  ..||+|....... ...|+|.|++
T Consensus        79 ~~~~~~~~~~~iG~~~i~l~~~~~~~--~~w~~L~~~~~~~-~~~G~i~~~~  127 (127)
T cd04027          79 KQKFTRESDDFLGQTIIEVRTLSGEM--DVWYNLEKRTDKS-AVSGAIRLHI  127 (127)
T ss_pred             ceeccccCCCcceEEEEEhHHccCCC--CeEEECccCCCCC-cEeEEEEEEC
Confidence               01137999999999999986443  6899998554333 3469998864

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev

>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins

Probab=99.68  E-value=4.2e-16  Score=142.09  Aligned_cols=102  Identities=28%  Similarity=0.431  Sum_probs=88.9

Q ss_pred             eeEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeeecCCCCCeeeeEEEEeecCCCCcEEEEEEEeCCCCCCcee
Q 045058          269 MYFLYVRVVKARELPAMDLTGSIDPFVEVKIGNYKGITKHYEKNQNPQWHQVFAFSRDRMQASVLEVVIKDKDLVKDDFV  348 (1005)
Q Consensus       269 ~~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~~~~~kT~~~~~~~nP~wne~f~f~~~~~~~~~l~v~V~d~~~~~d~~l  348 (1005)
                      |+.|.|+|++|++|+..+   ..||||++++++++.+|++.++ .||.|||.|.|.+.+... .|.|+|||++...|++|
T Consensus         1 m~~L~V~Vv~Ar~L~~~~---~~dPYV~Ik~g~~k~kT~v~~~-~nP~WnE~F~F~~~~~~~-~L~v~V~dkd~~~DD~l   75 (127)
T cd08394           1 MSLLCVLVKKAKLDGAPD---KFNTYVTLKVQNVKSTTIAVRG-SQPCWEQDFMFEINRLDL-GLVIELWNKGLIWDTLV   75 (127)
T ss_pred             CceEEEEEEEeeCCCCCC---CCCCeEEEEECCEEeEeeECCC-CCCceeeEEEEEEcCCCC-EEEEEEEeCCCcCCCce
Confidence            368999999999997654   4589999999999999998877 599999999999987664 59999999997799999


Q ss_pred             EEEEEEceecCCCCCCCCCCCCeEEEeecC
Q 045058          349 GIVRFDINEVPLRVPPDSPLAPEWYRLEDK  378 (1005)
Q Consensus       349 G~~~i~l~~l~~~~~~~~~~~~~w~~L~~~  378 (1005)
                      |++.|+|.++..+   +....++||+|...
T Consensus        76 G~v~i~L~~v~~~---~~~~~~~Wy~L~~~  102 (127)
T cd08394          76 GTVWIPLSTIRQS---NEEGPGEWLTLDSE  102 (127)
T ss_pred             EEEEEEhHHcccC---CCCCCCccEecChH
Confidence            9999999999876   34677999999854

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi

>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2

Probab=99.68  E-value=3.7e-16  Score=146.89  Aligned_cols=112  Identities=26%  Similarity=0.450  Sum_probs=94.0

Q ss_pred             cceeeeccccceeEEEEEEEEeecCCCCCCC-CCCCcEEEEEECC-----eeeeeeeecCCCCCeeeeEEEEeec--CCC
Q 045058          258 KTASTYDLVERMYFLYVRVVKARELPAMDLT-GSIDPFVEVKIGN-----YKGITKHYEKNQNPQWHQVFAFSRD--RMQ  329 (1005)
Q Consensus       258 ~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~-g~~dPyv~v~~~~-----~~~kT~~~~~~~nP~wne~f~f~~~--~~~  329 (1005)
                      .++..|+.  ..+.|.|+|++|+||+.++.. |.+||||++++.+     .++||++++++.||+|||+|.|.+.  ++.
T Consensus         5 ~~sl~y~~--~~~~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p~~~~~~~~kT~v~~~t~nP~~nE~f~f~v~~~~l~   82 (125)
T cd08393           5 QFALDYDP--KLRELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKRKTSVKKKTLNPVFNETLRYKVEREELP   82 (125)
T ss_pred             EEEEEEEC--CCCEEEEEEEEeCCCCCcCCCCCCCCcEEEEEEEcCCCccccccCccCcCCCCCccCceEEEECCHHHhC
Confidence            45555554  347899999999999999875 8999999999963     3468999999999999999999975  455


Q ss_pred             CcEEEEEEEeCC-CCCCceeEEEEEEceecCCCCCCCCCCCCeEEEee
Q 045058          330 ASVLEVVIKDKD-LVKDDFVGIVRFDINEVPLRVPPDSPLAPEWYRLE  376 (1005)
Q Consensus       330 ~~~l~v~V~d~~-~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~  376 (1005)
                      ...|.|+|||++ .+++++||++.++|.++...     .....||+|.
T Consensus        83 ~~~L~~~V~d~~~~~~~~~iG~~~i~L~~~~~~-----~~~~~W~~L~  125 (125)
T cd08393          83 TRVLNLSVWHRDSLGRNSFLGEVEVDLGSWDWS-----NTQPTWYPLQ  125 (125)
T ss_pred             CCEEEEEEEeCCCCCCCcEeEEEEEecCccccC-----CCCcceEECc
Confidence            678999999999 77899999999999999754     3467899873

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety

>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon

Probab=99.68  E-value=7.3e-16  Score=146.93  Aligned_cols=118  Identities=26%  Similarity=0.353  Sum_probs=99.9

Q ss_pred             ceEEEEEEEEecCCCCCCCC-------CCCCCCCcEEEEEECCEE-EEeeeccCCCCceeccEEEEEEeCCCceEEEEEE
Q 045058          595 IGILELGILNAVGLHPMKTR-------DGRGTSDTYCVAKYGHKW-VRTRTLVDNLSPKYNEQYTWEVFDPATVLTVGVF  666 (1005)
Q Consensus       595 ~g~l~v~i~~a~~L~~~~~~-------~~~~~~dpyv~~~~g~~~-~~T~~~~~t~nP~wne~f~~~v~~~~~~l~i~v~  666 (1005)
                      .|.|+|+|++|+||.+.+..       .+.+.+||||++.++++. .+|+++.+++||.|||.|+|.+. ....|.|.||
T Consensus         3 ~g~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~-~~~~l~~~v~   81 (132)
T cd04014           3 TGTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVDDTHIGKTSTKPKTNSPVWNEEFTTEVH-NGRNLELTVF   81 (132)
T ss_pred             ceEEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEECCEEEeEEeEcCCCCCCCcceeEEEEcC-CCCEEEEEEE
Confidence            48999999999999976531       013678999999999876 59999999999999999999996 4578999999


Q ss_pred             eCCCcCCCCCCCCCcccEEEEEEcccccC--CCEEeeeEeeeecCCCCCceeeEEEEEEEEee
Q 045058          667 DNSQLGEKSNGNKDLKIGKVRIRISTLET--GRIYTHSYPLLVLHPTGVKKMGELHLAIRFSC  727 (1005)
Q Consensus       667 d~~~~~~~~~~~~d~~lG~~~i~l~~l~~--~~~~~~~~~L~~~~~~~~~~~G~i~l~~~~~~  727 (1005)
                      |++.++      ++++||++.++|+++..  +...+.||+|.        ..|+|+|++++..
T Consensus        82 d~~~~~------~~~~iG~~~i~l~~l~~~~~~~~~~w~~L~--------~~G~l~l~~~~~~  130 (132)
T cd04014          82 HDAAIG------PDDFVANCTISFEDLIQRGSGSFDLWVDLE--------PQGKLHVKIELKG  130 (132)
T ss_pred             eCCCCC------CCceEEEEEEEhHHhcccCCCcccEEEEcc--------CCcEEEEEEEEec
Confidence            998765      78999999999999887  45678999995        3499999998753

A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that

>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins

Probab=99.68  E-value=2.8e-16  Score=148.66  Aligned_cols=106  Identities=26%  Similarity=0.416  Sum_probs=88.7

Q ss_pred             CcEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eEeeccccCCCCCCceeeEEEEEeccCccccceEEEEEEEeC
Q 045058            3 NLKLGVQVVGAHNLLPKDGKGSSSAFVELYFDG-----QRFRTTIKENDLNPVWNESFYFNISDASKLHYLTLEAYIYNN   77 (1005)
Q Consensus         3 ~~~l~V~v~~a~~L~~~d~~g~~dpyv~v~~~~-----~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~   77 (1005)
                      .+.|.|+|++|+||..++..+.+||||+|++.+     .+++|+++++++||+|||+|.|.+...+.+....|.|+|||+
T Consensus        15 ~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~l~~~~l~~~V~d~   94 (125)
T cd04031          15 TSQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQTFEYSNVRRETLKERTLEVTVWDY   94 (125)
T ss_pred             CCEEEEEEEEecCCCCcCCCCCCCCEEEEEEccCCCccccccccccCCCCCCccccEEEEcccCHHHhCCCEEEEEEEeC
Confidence            478999999999999999889999999999854     578999999999999999999996543334456899999999


Q ss_pred             CCCCCCCcccEEEEEeCCcccCCCCceeeeEecc
Q 045058           78 IGDTNSRSFLGKVCLTGNSFVPLSDSVVLHYPLE  111 (1005)
Q Consensus        78 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~  111 (1005)
                      +. .+++++||++.++|.+....+  ...||+|+
T Consensus        95 ~~-~~~~~~iG~~~i~l~~~~~~~--~~~W~~L~  125 (125)
T cd04031          95 DR-DGENDFLGEVVIDLADALLDD--EPHWYPLQ  125 (125)
T ss_pred             CC-CCCCcEeeEEEEecccccccC--CcceEECc
Confidence            54 458999999999999843333  24799985

RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as

>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins

Probab=99.67  E-value=4.4e-16  Score=147.23  Aligned_cols=120  Identities=23%  Similarity=0.324  Sum_probs=98.6

Q ss_pred             cEEEEEEEEeecCCCCC-CCCCCCcEEEEEECC--eEeeccccCCCCCCceeeEEEEEeccCccccceEEEEEEEeCCCC
Q 045058            4 LKLGVQVVGAHNLLPKD-GKGSSSAFVELYFDG--QRFRTTIKENDLNPVWNESFYFNISDASKLHYLTLEAYIYNNIGD   80 (1005)
Q Consensus         4 ~~l~V~v~~a~~L~~~d-~~g~~dpyv~v~~~~--~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~~   80 (1005)
                      |.|+|+|++|+||+..+ ..+.+||||+|++++  ..++|+++.++.||.|||.|.|.+...    ...|.|+|||++. 
T Consensus         2 g~l~v~v~~a~~L~~~~~~~~~~dpyv~v~~~~~~~~~kT~~~~~~~~P~Wne~~~~~v~~~----~~~l~~~v~d~~~-   76 (124)
T cd04044           2 GVLAVTIKSARGLKGSDIIGGTVDPYVTFSISNRRELARTKVKKDTSNPVWNETKYILVNSL----TEPLNLTVYDFND-   76 (124)
T ss_pred             eEEEEEEEcccCCCcccccCCCCCCeEEEEECCCCcceEeeeecCCCCCcceEEEEEEeCCC----CCEEEEEEEecCC-
Confidence            67999999999999765 456799999999988  689999999999999999999998632    3589999999954 


Q ss_pred             CCCCcccEEEEEeCCcccCCCCceeeeEecccCCCcceeeeEEEEEEEEec
Q 045058           81 TNSRSFLGKVCLTGNSFVPLSDSVVLHYPLEKRGIFSHVRGELGLKVYITD  131 (1005)
Q Consensus        81 ~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~~~  131 (1005)
                      .++|++||++.+++.++.........|+.|...+   +.+|+|++++.|.+
T Consensus        77 ~~~d~~iG~~~~~l~~l~~~~~~~~~~~~~~~~~---k~~G~i~~~l~~~p  124 (124)
T cd04044          77 KRKDKLIGTAEFDLSSLLQNPEQENLTKNLLRNG---KPVGELNYDLRFFP  124 (124)
T ss_pred             CCCCceeEEEEEEHHHhccCccccCcchhhhcCC---ccceEEEEEEEeCC
Confidence            4589999999999999987655433456665322   56899999998863

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3)

Probab=99.67  E-value=2.4e-16  Score=150.97  Aligned_cols=102  Identities=24%  Similarity=0.313  Sum_probs=86.8

Q ss_pred             EEEEEEEEecCCCCCCCCCCCCCCCcEEEEEECC-----EEEEeeeccCCCCceeccEEEEEEe---------------C
Q 045058          597 ILELGILNAVGLHPMKTRDGRGTSDTYCVAKYGH-----KWVRTRTLVDNLSPKYNEQYTWEVF---------------D  656 (1005)
Q Consensus       597 ~l~v~i~~a~~L~~~~~~~~~~~~dpyv~~~~g~-----~~~~T~~~~~t~nP~wne~f~~~v~---------------~  656 (1005)
                      .|.|+|++|+||..     ..|.+||||++.+++     ...+|+++++|+||+|||.|.|++.               +
T Consensus         1 kL~V~Vi~ArnL~~-----~~g~sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~   75 (148)
T cd04010           1 KLSVRVIECSDLAL-----KNGTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVTIDSSPEKKQFEMPEED   75 (148)
T ss_pred             CEEEEEEeCcCCCC-----CCCCCCceEEEEEeCCcccCcccCCccEeCCCCCccceEEEEEEecccccccccccCCccc
Confidence            38999999999985     257899999999965     5679999999999999999999995               1


Q ss_pred             -CCceEEEEEEeCCCcCCCCCCCCCcccEEEEEEcccccCC-CEEeeeEeeeecC
Q 045058          657 -PATVLTVGVFDNSQLGEKSNGNKDLKIGKVRIRISTLETG-RIYTHSYPLLVLH  709 (1005)
Q Consensus       657 -~~~~l~i~v~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~-~~~~~~~~L~~~~  709 (1005)
                       ....|.|.|||++.++      .|++||++.|+|+.+..+ .....||+|....
T Consensus        76 ~~~~~L~i~V~d~~~~~------~ddfLG~v~i~l~~l~~~~~~~~~W~~L~~~~  124 (148)
T cd04010          76 AEKLELRVDLWHASMGG------GDVFLGEVRIPLRGLDLQAGSHQAWYFLQPRE  124 (148)
T ss_pred             ccEEEEEEEEEcCCCCC------CCceeEEEEEecccccccCCcCcceeecCCcc
Confidence             1247999999998655      899999999999999987 5568999997443

RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain

>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone

Probab=99.67  E-value=2.7e-16  Score=144.43  Aligned_cols=105  Identities=28%  Similarity=0.469  Sum_probs=89.7

Q ss_pred             EEEEEEEeecCCCCCC-CCCCCcEEEEEECCeEeeccccCCCCCCce-eeEEEEEeccCccccceEEEEEEEeCCCCCCC
Q 045058            6 LGVQVVGAHNLLPKDG-KGSSSAFVELYFDGQRFRTTIKENDLNPVW-NESFYFNISDASKLHYLTLEAYIYNNIGDTNS   83 (1005)
Q Consensus         6 l~V~v~~a~~L~~~d~-~g~~dpyv~v~~~~~~~~T~v~~~t~nP~W-ne~f~f~v~~~~~~~~~~l~v~V~d~~~~~~~   83 (1005)
                      |.|+|++|+||+.++. .|.+||||+|+++++++||+++++++||+| ||+|.|.+...+ +....|.|+|||++ ..++
T Consensus         1 l~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~kT~v~~~~~nP~W~ne~f~f~i~~~~-l~~~~l~i~V~d~d-~~~~   78 (110)
T cd08688           1 LKVRVVAARDLPVMDRSSDLTDAFVEVKFGSTTYKTDVVKKSLNPVWNSEWFRFEVDDEE-LQDEPLQIRVMDHD-TYSA   78 (110)
T ss_pred             CEEEEEEEECCCccccCCCCCCceEEEEECCeeEecceecCCCCCcccCcEEEEEcChHH-cCCCeEEEEEEeCC-CCCC
Confidence            6899999999999884 688999999999999999999999999999 999999986543 33468999999995 4568


Q ss_pred             CcccEEEEEeCCcccCC--CCceeeeEeccc
Q 045058           84 RSFLGKVCLTGNSFVPL--SDSVVLHYPLEK  112 (1005)
Q Consensus        84 d~~lG~~~i~l~~l~~~--~~~~~~w~~L~~  112 (1005)
                      +++||++.+++.++...  +.....||+|..
T Consensus        79 ~~~iG~~~~~l~~l~~~~~~~~~~~w~~l~~  109 (110)
T cd08688          79 NDAIGKVYIDLNPLLLKDSVSQISGWFPIYD  109 (110)
T ss_pred             CCceEEEEEeHHHhcccCCccccCCeEEccc
Confidence            99999999999998763  333567999864

The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a

>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3

Probab=99.67  E-value=7.7e-16  Score=144.57  Aligned_cols=105  Identities=21%  Similarity=0.313  Sum_probs=89.4

Q ss_pred             EEEEEEEEeeeCCCCCCC-CCCCcEEEEEEC-----CeEEeeecccCCCCCcccccEEEEEeeCC--CCCeEEEEEEecc
Q 045058          435 YVRVNVVEAQDLVPTEKN-HFPDVYVKAQIG-----NQVLKTKICQARTLSAVWNEDLLFVAAEP--FEDHLVLTVEDRV  506 (1005)
Q Consensus       435 ~L~V~v~~a~~L~~~d~~-~~~dpyv~v~lg-----~~~~kT~~~~~~t~~P~w~e~f~f~v~~~--~~~~l~i~V~d~d  506 (1005)
                      .|.|.|++|+||+..+.. |.+||||++++.     ..+.||++++ ++.||.|||+|.|.+...  ....|.+.|||.+
T Consensus        16 ~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~~~~~~k~kT~v~~-~t~nPvfNE~F~f~v~~~~l~~~~L~v~V~~~~   94 (128)
T cd08392          16 CLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKSHNSKRKTAVKK-GTVNPVFNETLKYVVEADLLSSRQLQVSVWHSR   94 (128)
T ss_pred             EEEEEEEecCCCCccCCCCCCCCeEEEEEEEeCCcccceeeccccc-CCCCCccceEEEEEcCHHHhCCcEEEEEEEeCC
Confidence            799999999999999875 899999999993     2467899996 999999999999998553  3568999999999


Q ss_pred             CCCCCceeEEEEEcccccccccccccccceeEEcc
Q 045058          507 GPGKDEIIGRVIIPLSAIEKRADERIIHSRWFNLE  541 (1005)
Q Consensus       507 ~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~w~~L~  541 (1005)
                      .++++++||++.|+|+++.... ......+||+|.
T Consensus        95 ~~~~~~~lG~~~i~L~~~~~~~-~~~~~~~W~~l~  128 (128)
T cd08392          95 TLKRRVFLGEVLIPLADWDFED-TDSQRFLWYPLN  128 (128)
T ss_pred             CCcCcceEEEEEEEcCCcccCC-CCccccceEECc
Confidence            9899999999999999986542 234578999984

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids

>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone

Probab=99.67  E-value=3e-16  Score=144.17  Aligned_cols=101  Identities=24%  Similarity=0.386  Sum_probs=89.0

Q ss_pred             EEEEEEEecCCCCCCCCCCCCCCCcEEEEEECCEEEEeeeccCCCCcee-ccEEEEEEeCC---CceEEEEEEeCCCcCC
Q 045058          598 LELGILNAVGLHPMKTRDGRGTSDTYCVAKYGHKWVRTRTLVDNLSPKY-NEQYTWEVFDP---ATVLTVGVFDNSQLGE  673 (1005)
Q Consensus       598 l~v~i~~a~~L~~~~~~~~~~~~dpyv~~~~g~~~~~T~~~~~t~nP~w-ne~f~~~v~~~---~~~l~i~v~d~~~~~~  673 (1005)
                      |+|+|++|+||++++.  ..|.+||||++.+++..+||+++++++||.| ||.|.|.+...   ...|.|+|||++.++ 
T Consensus         1 l~V~v~~a~~L~~~d~--~~~~~Dpyv~v~~~~~~~kT~v~~~~~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~d~~~-   77 (110)
T cd08688           1 LKVRVVAARDLPVMDR--SSDLTDAFVEVKFGSTTYKTDVVKKSLNPVWNSEWFRFEVDDEELQDEPLQIRVMDHDTYS-   77 (110)
T ss_pred             CEEEEEEEECCCcccc--CCCCCCceEEEEECCeeEecceecCCCCCcccCcEEEEEcChHHcCCCeEEEEEEeCCCCC-
Confidence            6899999999997642  3578899999999999999999999999999 99999999763   468999999999776 


Q ss_pred             CCCCCCCcccEEEEEEcccccC---CCEEeeeEeee
Q 045058          674 KSNGNKDLKIGKVRIRISTLET---GRIYTHSYPLL  706 (1005)
Q Consensus       674 ~~~~~~d~~lG~~~i~l~~l~~---~~~~~~~~~L~  706 (1005)
                           ++++||++.++|+++..   +.....||+|.
T Consensus        78 -----~~~~iG~~~~~l~~l~~~~~~~~~~~w~~l~  108 (110)
T cd08688          78 -----ANDAIGKVYIDLNPLLLKDSVSQISGWFPIY  108 (110)
T ss_pred             -----CCCceEEEEEeHHHhcccCCccccCCeEEcc
Confidence                 88999999999999877   34578999986

The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a

>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family

Probab=99.67  E-value=9.7e-16  Score=145.03  Aligned_cols=125  Identities=22%  Similarity=0.389  Sum_probs=103.0

Q ss_pred             ceEEEEEEEEecCCCCCCCCCCCCCCCcEEEEEECCEE-EEeeeccCCCCceeccEEEEEEeCCCceEEEEEEeCCCcCC
Q 045058          595 IGILELGILNAVGLHPMKTRDGRGTSDTYCVAKYGHKW-VRTRTLVDNLSPKYNEQYTWEVFDPATVLTVGVFDNSQLGE  673 (1005)
Q Consensus       595 ~g~l~v~i~~a~~L~~~~~~~~~~~~dpyv~~~~g~~~-~~T~~~~~t~nP~wne~f~~~v~~~~~~l~i~v~d~~~~~~  673 (1005)
                      .-.|.|.|++|+||++++        +|||.+.+++.. .||+++.++.||.|||.|.|+...+...|+|.||+.+...+
T Consensus        10 ~~sL~v~V~EAk~Lp~~~--------~~Y~~i~Ld~~~vaRT~v~~~~~nP~W~E~F~f~~~~~~~~l~v~v~k~~~~~~   81 (146)
T cd04013          10 ENSLKLWIIEAKGLPPKK--------RYYCELCLDKTLYARTTSKLKTDTLFWGEHFEFSNLPPVSVITVNLYRESDKKK   81 (146)
T ss_pred             EEEEEEEEEEccCCCCcC--------CceEEEEECCEEEEEEEEEcCCCCCcceeeEEecCCCcccEEEEEEEEccCccc
Confidence            367999999999999643        799999999987 49999999999999999999877777899999987653210


Q ss_pred             CCCCCCCcccEEEEEEcccccCCCEEeeeEeeeecCCCC-------CceeeEEEEEEEEeecc
Q 045058          674 KSNGNKDLKIGKVRIRISTLETGRIYTHSYPLLVLHPTG-------VKKMGELHLAIRFSCTS  729 (1005)
Q Consensus       674 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~-------~~~~G~i~l~~~~~~~~  729 (1005)
                        ...++++||++.||+.++..+...+.||||.....+.       ....+.|+++++|....
T Consensus        82 --~~~~~~~IG~V~Ip~~~l~~~~~ve~Wfpl~~~~~~~~~~~~~~~~~~~~lrik~rf~~~~  142 (146)
T cd04013          82 --KKDKSQLIGTVNIPVTDVSSRQFVEKWYPVSTPKGNGKSGGKEGKGESPSIRIKARYQSTR  142 (146)
T ss_pred             --cccCCcEEEEEEEEHHHhcCCCcccEEEEeecCCCCCccccccccCCCCEEEEEEEEEEee
Confidence              1226899999999999999999999999998666543       33458999999997543

SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas

>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2)

Probab=99.67  E-value=8.5e-16  Score=143.63  Aligned_cols=113  Identities=31%  Similarity=0.472  Sum_probs=97.3

Q ss_pred             EEEEEEEeecCCCCCCCCCCCcEEEEEECC---eeeeeeeecCCCCCeeeeEEEEeecCCCCcEEEEEEEeCCCCCCcee
Q 045058          272 LYVRVVKARELPAMDLTGSIDPFVEVKIGN---YKGITKHYEKNQNPQWHQVFAFSRDRMQASVLEVVIKDKDLVKDDFV  348 (1005)
Q Consensus       272 L~V~v~~a~~L~~~~~~g~~dPyv~v~~~~---~~~kT~~~~~~~nP~wne~f~f~~~~~~~~~l~v~V~d~~~~~d~~l  348 (1005)
                      |.|+|++|++|+..+..+.+||||++++++   ..++|++++++.||+|||+|.|.+.......|.|+|||++..++++|
T Consensus         2 L~V~vi~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~vv~~t~nP~Wne~f~f~i~~~~~~~l~v~v~d~d~~~~~~i   81 (119)
T cd04036           2 LTVRVLRATNITKGDLLSTPDCYVELWLPTASDEKKRTKTIKNSINPVWNETFEFRIQSQVKNVLELTVMDEDYVMDDHL   81 (119)
T ss_pred             eEEEEEEeeCCCccCCCCCCCcEEEEEEcCCCCccCccceecCCCCCccceEEEEEeCcccCCEEEEEEEECCCCCCccc
Confidence            689999999999998889999999999964   56799999999999999999999876655789999999993389999


Q ss_pred             EEEEEEceecCCCCCCCCCCCCeEEEeecCCCCccceEEEEEEEE
Q 045058          349 GIVRFDINEVPLRVPPDSPLAPEWYRLEDKKGEKIKGELMLAVWI  393 (1005)
Q Consensus       349 G~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~G~i~l~~~~  393 (1005)
                      |++.+++.++..+     .....|++|....    .|++.+.+.+
T Consensus        82 G~~~~~l~~l~~g-----~~~~~~~~L~~~~----~g~l~~~~~~  117 (119)
T cd04036          82 GTVLFDVSKLKLG-----EKVRVTFSLNPQG----KEELEVEFLL  117 (119)
T ss_pred             EEEEEEHHHCCCC-----CcEEEEEECCCCC----CceEEEEEEe
Confidence            9999999998765     3568899998753    3888887754

A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o

>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8

Probab=99.66  E-value=5.3e-16  Score=146.26  Aligned_cols=106  Identities=24%  Similarity=0.327  Sum_probs=91.0

Q ss_pred             CcEEEEEEEEeecCCCCCCCCCCCcEEEEEEC---CeEeeccccCCCCCCceeeEEEEEeccCccccceEEEEEEEeCCC
Q 045058            3 NLKLGVQVVGAHNLLPKDGKGSSSAFVELYFD---GQRFRTTIKENDLNPVWNESFYFNISDASKLHYLTLEAYIYNNIG   79 (1005)
Q Consensus         3 ~~~l~V~v~~a~~L~~~d~~g~~dpyv~v~~~---~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~   79 (1005)
                      .+.|.|+|++|+||..++..|.+||||+|++.   +.+++|+++++++||+|||+|.|.+...+ +....|.|+|||++.
T Consensus        15 ~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~-l~~~~l~i~V~d~~~   93 (124)
T cd08387          15 MGILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRSNTKQSKIHKKTLNPEFDESFVFEVPPQE-LPKRTLEVLLYDFDQ   93 (124)
T ss_pred             CCEEEEEEEEeeCCCCCCCCCCCCCeEEEEEecCCCCcEeCceEcCCCCCCcccEEEEeCCHHH-hCCCEEEEEEEECCC
Confidence            47899999999999999999999999999983   34789999999999999999999986532 345689999999954


Q ss_pred             CCCCCcccEEEEEeCCcccCCCCceeeeEecc
Q 045058           80 DTNSRSFLGKVCLTGNSFVPLSDSVVLHYPLE  111 (1005)
Q Consensus        80 ~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~  111 (1005)
                       .+++++||++.+++.++...+. ...||+|+
T Consensus        94 -~~~~~~iG~~~i~l~~~~~~~~-~~~W~~l~  123 (124)
T cd08387          94 -FSRDECIGVVELPLAEVDLSEK-LDLWRKIQ  123 (124)
T ss_pred             -CCCCceeEEEEEecccccCCCC-cceEEECc
Confidence             5689999999999999986664 46899985

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv

>cd04041 C2A_fungal C2 domain first repeat; fungal group

Probab=99.66  E-value=3.6e-16  Score=143.90  Aligned_cols=104  Identities=22%  Similarity=0.276  Sum_probs=87.1

Q ss_pred             cEEEEEEEEeecCCCCCCC-CCCCcEEEEEECC---eEeeccccCCCCCCceeeEEEEEeccCccccceEEEEEEEeCCC
Q 045058            4 LKLGVQVVGAHNLLPKDGK-GSSSAFVELYFDG---QRFRTTIKENDLNPVWNESFYFNISDASKLHYLTLEAYIYNNIG   79 (1005)
Q Consensus         4 ~~l~V~v~~a~~L~~~d~~-g~~dpyv~v~~~~---~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~   79 (1005)
                      |.|+|+|++|+||+..+.. |.+||||+|++.+   ..++|+++++++||+|||+|.|.+...+......|.|+|||++.
T Consensus         1 G~L~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~d~   80 (111)
T cd04041           1 GVLVVTIHRATDLPKADFGTGSSDPYVTASFAKFGKPLYSTRIIRKDLNPVWEETWFVLVTPDEVKAGERLSCRLWDSDR   80 (111)
T ss_pred             CEEEEEEEEeeCCCcccCCCCCCCccEEEEEccCCCccEeeeeECCCCCCccceeEEEEeCchhccCCCEEEEEEEeCCC
Confidence            6899999999999999987 8999999999843   46899999999999999999998865432234589999999964


Q ss_pred             CCCCCcccEEEEEeCCcccCCCCceeeeEeccc
Q 045058           80 DTNSRSFLGKVCLTGNSFVPLSDSVVLHYPLEK  112 (1005)
Q Consensus        80 ~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~  112 (1005)
                       .++|++||++.+++.++...+    .|++++.
T Consensus        81 -~~~dd~lG~~~i~l~~l~~~~----~~~~~~~  108 (111)
T cd04041          81 -FTADDRLGRVEIDLKELIEDR----NWMGRRE  108 (111)
T ss_pred             -CCCCCcceEEEEEHHHHhcCC----CCCcccc
Confidence             458999999999999997433    4888754

C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan

>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8

Probab=99.66  E-value=7.3e-16  Score=145.33  Aligned_cols=105  Identities=24%  Similarity=0.423  Sum_probs=91.6

Q ss_pred             CcceEEEEEEEEecCCCCCCCCCCCCCCCcEEEEEEC---CEEEEeeeccCCCCceeccEEEEEEeCC---CceEEEEEE
Q 045058          593 PSIGILELGILNAVGLHPMKTRDGRGTSDTYCVAKYG---HKWVRTRTLVDNLSPKYNEQYTWEVFDP---ATVLTVGVF  666 (1005)
Q Consensus       593 ~~~g~l~v~i~~a~~L~~~~~~~~~~~~dpyv~~~~g---~~~~~T~~~~~t~nP~wne~f~~~v~~~---~~~l~i~v~  666 (1005)
                      +..|.|.|+|++|+||+++   +..|.+||||++.++   ....||+++++++||+|||.|.|.+...   ...|.|+||
T Consensus        13 ~~~~~L~V~v~~a~~L~~~---d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~l~~~~l~i~V~   89 (124)
T cd08387          13 KDMGILNVKLIQARNLQPR---DFSGTADPYCKVRLLPDRSNTKQSKIHKKTLNPEFDESFVFEVPPQELPKRTLEVLLY   89 (124)
T ss_pred             CCCCEEEEEEEEeeCCCCC---CCCCCCCCeEEEEEecCCCCcEeCceEcCCCCCCcccEEEEeCCHHHhCCCEEEEEEE
Confidence            4458999999999999965   457789999999983   3468999999999999999999998753   568999999


Q ss_pred             eCCCcCCCCCCCCCcccEEEEEEcccccCCCEEeeeEeee
Q 045058          667 DNSQLGEKSNGNKDLKIGKVRIRISTLETGRIYTHSYPLL  706 (1005)
Q Consensus       667 d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~  706 (1005)
                      |++.++      ++++||.+.|+|+++..+...+.||+|.
T Consensus        90 d~~~~~------~~~~iG~~~i~l~~~~~~~~~~~W~~l~  123 (124)
T cd08387          90 DFDQFS------RDECIGVVELPLAEVDLSEKLDLWRKIQ  123 (124)
T ss_pred             ECCCCC------CCceeEEEEEecccccCCCCcceEEECc
Confidence            998766      8999999999999998777889999985

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv

>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD)

Probab=99.66  E-value=1.8e-15  Score=147.70  Aligned_cols=118  Identities=22%  Similarity=0.396  Sum_probs=100.6

Q ss_pred             eEEEEEEEEeecCCCCC------------------------------CCCCCCcEEEEEECCee-eeeeeecCCCCCeee
Q 045058          270 YFLYVRVVKARELPAMD------------------------------LTGSIDPFVEVKIGNYK-GITKHYEKNQNPQWH  318 (1005)
Q Consensus       270 ~~L~V~v~~a~~L~~~~------------------------------~~g~~dPyv~v~~~~~~-~kT~~~~~~~nP~wn  318 (1005)
                      |.|.|+|.+|++|+.+|                              ..|.+||||+|++++.. .+|++++++.||.||
T Consensus         7 G~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~~~~~~rT~v~~~~~nP~Wn   86 (158)
T cd04015           7 GTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLAGARVARTRVIENSENPVWN   86 (158)
T ss_pred             eeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEECCeEeeEEEEeCCCCCCccc
Confidence            78999999999999887                              35678999999999865 699999999999999


Q ss_pred             eEEEEeecCCCCcEEEEEEEeCCCCCCceeEEEEEEceecCCCCCCCCCCCCeEEEeecCCCCc--cceEEEEEEEE
Q 045058          319 QVFAFSRDRMQASVLEVVIKDKDLVKDDFVGIVRFDINEVPLRVPPDSPLAPEWYRLEDKKGEK--IKGELMLAVWI  393 (1005)
Q Consensus       319 e~f~f~~~~~~~~~l~v~V~d~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~--~~G~i~l~~~~  393 (1005)
                      |+|.|.+.... ..|.|.|||++..++++||.+.+++.++..+     .....|++|.+..+..  ..|.|++++.|
T Consensus        87 E~F~~~~~~~~-~~l~~~V~d~d~~~~~~IG~~~i~l~~l~~g-----~~~~~w~~L~~~~~~~~~~~~~l~v~~~f  157 (158)
T cd04015          87 ESFHIYCAHYA-SHVEFTVKDNDVVGAQLIGRAYIPVEDLLSG-----EPVEGWLPILDSNGKPPKPGAKIRVSLQF  157 (158)
T ss_pred             eEEEEEccCCC-CEEEEEEEeCCCcCCcEEEEEEEEhHHccCC-----CCcceEEECcCCCCCCCCCCCEEEEEEEE
Confidence            99999987654 5799999999955678999999999999764     3568999998765443  45799999887

PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic

>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4

Probab=99.66  E-value=6.9e-16  Score=151.23  Aligned_cols=110  Identities=25%  Similarity=0.340  Sum_probs=92.1

Q ss_pred             CCcEEEEEEEEeecCCCCCCCCCCCcEEEEEEC-----CeEeeccccCCCCCCceeeEEEEEeccCccccceEEEEEEEe
Q 045058            2 RNLKLGVQVVGAHNLLPKDGKGSSSAFVELYFD-----GQRFRTTIKENDLNPVWNESFYFNISDASKLHYLTLEAYIYN   76 (1005)
Q Consensus         2 ~~~~l~V~v~~a~~L~~~d~~g~~dpyv~v~~~-----~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d   76 (1005)
                      ..+.|.|+|++|+||+.++..|.+||||+|++.     ..++||+++++++||+|||+|.|.+...+.+....|.|+|||
T Consensus        25 ~~g~L~V~Vi~A~nL~~~d~~g~~DPYVkv~l~~~~~~~~~~kT~vi~~t~nP~WnE~f~f~~~~~~~l~~~~L~i~V~d  104 (162)
T cd04020          25 STGELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQKTPVVKKSVNPVWNHTFVYDGVSPEDLSQACLELTVWD  104 (162)
T ss_pred             CCceEEEEEEeeeCCCCCCCCCCCCCEEEEEEEcCCCCCcceeCCccCCCCCCCCCCEEEEecCCHHHhCCCEEEEEEEe
Confidence            357999999999999999988999999999982     357899999999999999999998644444455689999999


Q ss_pred             CCCCCCCCcccEEEEEeCCcccCCCCceeeeEecccC
Q 045058           77 NIGDTNSRSFLGKVCLTGNSFVPLSDSVVLHYPLEKR  113 (1005)
Q Consensus        77 ~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~  113 (1005)
                      ++. .++|++||++.+++.++...+.. ..|+.|.+.
T Consensus       105 ~d~-~~~d~~lG~v~i~l~~~~~~~~~-~~w~~~~~~  139 (162)
T cd04020         105 HDK-LSSNDFLGGVRLGLGTGKSYGQA-VDWMDSTGE  139 (162)
T ss_pred             CCC-CCCCceEEEEEEeCCccccCCCc-cccccCChH
Confidence            964 56899999999999998766543 578888643

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin

>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin

Probab=99.66  E-value=2e-15  Score=144.24  Aligned_cols=122  Identities=26%  Similarity=0.421  Sum_probs=99.5

Q ss_pred             eEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeeecCCCCCeeeeEEEEeecCC---------CCcEEEEEEEeC
Q 045058          270 YFLYVRVVKARELPAMDLTGSIDPFVEVKIGNYKGITKHYEKNQNPQWHQVFAFSRDRM---------QASVLEVVIKDK  340 (1005)
Q Consensus       270 ~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~~~~~kT~~~~~~~nP~wne~f~f~~~~~---------~~~~l~v~V~d~  340 (1005)
                      ++|+|+|++|++|+..+..|.+||||++.++++.++|++++++.||.|||+|.|....+         ....|.|+|||+
T Consensus         1 ~~l~v~V~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V~d~   80 (135)
T cd04017           1 FQLRAYIYQARDLLAADKSGLSDPFARVSFLNQSQETEVIKETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVELFDQ   80 (135)
T ss_pred             CEEEEEEEEeecCcCCCCCCCCCCEEEEEECCeeeEeeeEcCCCCCccCcEEEEeeeeccCChHHhhcCCCEEEEEEEeC
Confidence            36899999999999999999999999999999999999999999999999999975332         125799999999


Q ss_pred             C-CCCCceeEEEEEE-ceecCCCCCCCCCCCCeEEEeecCCCCccceEEEEEEEEec
Q 045058          341 D-LVKDDFVGIVRFD-INEVPLRVPPDSPLAPEWYRLEDKKGEKIKGELMLAVWIGT  395 (1005)
Q Consensus       341 ~-~~~d~~lG~~~i~-l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~G~i~l~~~~~~  395 (1005)
                      + .++|++||++.+. +..+...  .......+|++|.....  ..|+|++++.+.+
T Consensus        81 d~~~~d~~iG~~~i~~~~~~~~~--~~~~~~~~W~~L~~~~~--~~Geil~~~~~~~  133 (135)
T cd04017          81 DSVGKDEFLGRSVAKPLVKLDLE--EDFPPKLQWFPIYKGGQ--SAGELLAAFELIE  133 (135)
T ss_pred             cCCCCCccceEEEeeeeeecccC--CCCCCCceEEEeecCCC--chhheeEEeEEEE
Confidence            9 7789999999974 4433321  12356789999985433  5799999997754

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme

>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins

Probab=99.66  E-value=6.3e-16  Score=140.81  Aligned_cols=102  Identities=24%  Similarity=0.407  Sum_probs=92.0

Q ss_pred             EEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeeecCCCCCeeeeEEEEeecCCCCcEEEEEEEeCCCCCCceeEEE
Q 045058          272 LYVRVVKARELPAMDLTGSIDPFVEVKIGNYKGITKHYEKNQNPQWHQVFAFSRDRMQASVLEVVIKDKDLVKDDFVGIV  351 (1005)
Q Consensus       272 L~V~v~~a~~L~~~~~~g~~dPyv~v~~~~~~~kT~~~~~~~nP~wne~f~f~~~~~~~~~l~v~V~d~~~~~d~~lG~~  351 (1005)
                      |.|+|++|++|+..+..+.+||||+++++++.++|++++++.||.|||.|.|.+.+.....|.|+|+|++.  +++||++
T Consensus         2 L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~v~v~d~~~--~~~iG~~   79 (105)
T cd04050           2 LFVYLDSAKNLPLAKSTKEPSPYVELTVGKTTQKSKVKERTNNPVWEEGFTFLVRNPENQELEIEVKDDKT--GKSLGSL   79 (105)
T ss_pred             EEEEEeeecCCCCcccCCCCCcEEEEEECCEEEeCccccCCCCCcccceEEEEeCCCCCCEEEEEEEECCC--CCccEEE
Confidence            78999999999999888999999999999999999999999999999999999988766799999999876  8999999


Q ss_pred             EEEceecCCCCCCCCCCCCeEEEeecC
Q 045058          352 RFDINEVPLRVPPDSPLAPEWYRLEDK  378 (1005)
Q Consensus       352 ~i~l~~l~~~~~~~~~~~~~w~~L~~~  378 (1005)
                      .++|.++....   ....++||+|.+.
T Consensus        80 ~i~l~~l~~~~---~~~~~~w~~L~~~  103 (105)
T cd04050          80 TLPLSELLKEP---DLTLDQPFPLDNS  103 (105)
T ss_pred             EEEHHHhhccc---cceeeeeEecCCC
Confidence            99999998642   2457899999764

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm

>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16

Probab=99.66  E-value=6e-16  Score=145.09  Aligned_cols=107  Identities=26%  Similarity=0.366  Sum_probs=90.5

Q ss_pred             CcEEEEEEEEeecCCCCCCCCCCCcEEEEEEC---CeEeeccccCCCCCCceeeEEEEEeccCccccceEEEEEEEeCCC
Q 045058            3 NLKLGVQVVGAHNLLPKDGKGSSSAFVELYFD---GQRFRTTIKENDLNPVWNESFYFNISDASKLHYLTLEAYIYNNIG   79 (1005)
Q Consensus         3 ~~~l~V~v~~a~~L~~~d~~g~~dpyv~v~~~---~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~   79 (1005)
                      ...|.|+|++|+||+.++..|.+||||.+.+.   .+++||+++++ .||+|||+|.|.+...+.+....|.|.|||++.
T Consensus        15 ~~~L~V~Vi~a~nL~~~~~~~~~d~yVk~~llp~~~~~~kTkv~~~-~nP~fnE~F~f~~i~~~~l~~~~L~~~V~~~~~   93 (124)
T cd08389          15 ARKLTVTVIRAQDIPTKDRGGASSWQVHLVLLPSKKQRAKTKVQRG-PNPVFNETFTFSRVEPEELNNMALRFRLYGVER   93 (124)
T ss_pred             CCEEEEEEEEecCCCchhcCCCCCcEEEEEEccCCcceeecccccC-CCCcccCEEEECCCCHHHhccCEEEEEEEECCC
Confidence            47899999999999999988999999998762   35789999888 999999999999434444667899999999964


Q ss_pred             CCCCCcccEEEEEeCCcccCCCCceeeeEeccc
Q 045058           80 DTNSRSFLGKVCLTGNSFVPLSDSVVLHYPLEK  112 (1005)
Q Consensus        80 ~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~  112 (1005)
                       .+++++||++.|+|+++...+. ...||+|++
T Consensus        94 -~~~~~~lG~~~i~L~~l~~~~~-~~~w~~L~p  124 (124)
T cd08389          94 -MRKERLIGEKVVPLSQLNLEGE-TTVWLTLEP  124 (124)
T ss_pred             -cccCceEEEEEEeccccCCCCC-ceEEEeCCC
Confidence             5689999999999999976554 458999974

Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle

>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin

Probab=99.66  E-value=1.4e-15  Score=144.03  Aligned_cols=116  Identities=23%  Similarity=0.326  Sum_probs=98.3

Q ss_pred             EEEeecCCCCCCCCCCCcEEEEEECCeEeeccccCCCCCCceeeEEEEEeccCccccceEEEEEEEeCCCCCCCCcccEE
Q 045058           10 VVGAHNLLPKDGKGSSSAFVELYFDGQRFRTTIKENDLNPVWNESFYFNISDASKLHYLTLEAYIYNNIGDTNSRSFLGK   89 (1005)
Q Consensus        10 v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~~~~~d~~lG~   89 (1005)
                      |++|++|+.  ..|.+||||+|++++.+++|++++++.||+|||+|.|.+.... .....|.|+|||++. .++|++||+
T Consensus         2 vi~a~~L~~--~~g~~Dpyv~v~~~~~~~kT~v~~~~~nP~Wne~f~f~~~~~~-~~~~~l~~~v~d~~~-~~~d~~iG~   77 (127)
T cd08373           2 VVSLKNLPG--LKGKGDRIAKVTFRGVKKKTRVLENELNPVWNETFEWPLAGSP-DPDESLEIVVKDYEK-VGRNRLIGS   77 (127)
T ss_pred             eEEeeCCcc--cCCCCCCEEEEEECCEeeecceeCCCcCCcccceEEEEeCCCc-CCCCEEEEEEEECCC-CCCCceEEE
Confidence            789999998  6789999999999999999999999999999999999996542 234689999999954 458999999


Q ss_pred             EEEeCCcccCCCCceeeeEecccCCCcceeeeEEEEEEEEec
Q 045058           90 VCLTGNSFVPLSDSVVLHYPLEKRGIFSHVRGELGLKVYITD  131 (1005)
Q Consensus        90 ~~i~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~~~  131 (1005)
                      +.+++.++...+. ...|++|.+.+.. ..+|+|++++.|.+
T Consensus        78 ~~~~l~~l~~~~~-~~~~~~L~~~~~~-~~~~~l~l~~~~~~  117 (127)
T cd08373          78 ATVSLQDLVSEGL-LEVTEPLLDSNGR-PTGATISLEVSYQP  117 (127)
T ss_pred             EEEEhhHcccCCc-eEEEEeCcCCCCC-cccEEEEEEEEEeC
Confidence            9999999886544 4579999866543 45799999999877

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1)

Probab=99.66  E-value=1.7e-15  Score=144.89  Aligned_cols=123  Identities=20%  Similarity=0.237  Sum_probs=98.2

Q ss_pred             EEEEEEEeec--CCCCCCCCCCCcEEEEEE----C-CeEeeccccCCCCCCceeeEEEEEeccCc-----cccceEEEEE
Q 045058            6 LGVQVVGAHN--LLPKDGKGSSSAFVELYF----D-GQRFRTTIKENDLNPVWNESFYFNISDAS-----KLHYLTLEAY   73 (1005)
Q Consensus         6 l~V~v~~a~~--L~~~d~~g~~dpyv~v~~----~-~~~~~T~v~~~t~nP~Wne~f~f~v~~~~-----~~~~~~l~v~   73 (1005)
                      ..++|+.|++  |+..+..+.+||||++++    + .++.||+++++|+||+|||+|.|.+...+     .+....|.|+
T Consensus         4 ~el~i~~~~~~~l~~~~~~~~~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L~~~   83 (155)
T cd08690           4 IELTIVRCIGIPLPSGWNPKDLDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHGLKFE   83 (155)
T ss_pred             eEEEEEEeeccccCCCcCCCCCCeEEEEEEecCCCCCceeecCcccCCCCCcccceEEEEeccccchhhhhccCCcEEEE
Confidence            4567777777  667777889999999997    2 35899999999999999999999996543     2345679999


Q ss_pred             EEeCCCCCCCCcccEEEEEeCCcccCCCCceeeeEecccCCCcceeeeEEEEEEEEec
Q 045058           74 IYNNIGDTNSRSFLGKVCLTGNSFVPLSDSVVLHYPLEKRGIFSHVRGELGLKVYITD  131 (1005)
Q Consensus        74 V~d~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~~~  131 (1005)
                      |||++..+.+|++||++.++|..+...... ..|++|....  ..+.|++++++.+..
T Consensus        84 V~d~~~f~~~D~~iG~~~i~L~~l~~~~~~-~~~~~L~~~~--k~~Gg~l~v~ir~r~  138 (155)
T cd08690          84 VYHKGGFLRSDKLLGTAQVKLEPLETKCEI-HESVDLMDGR--KATGGKLEVKVRLRE  138 (155)
T ss_pred             EEeCCCcccCCCeeEEEEEEcccccccCcc-eEEEEhhhCC--CCcCCEEEEEEEecC
Confidence            999965445899999999999999776554 3599987432  267899999998765

Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha

>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10

Probab=99.66  E-value=7.5e-16  Score=145.33  Aligned_cols=106  Identities=25%  Similarity=0.348  Sum_probs=89.9

Q ss_pred             CcEEEEEEEEeecCCCCCCCCCCCcEEEEEECC---eEeeccccCCCCCCceeeEEEEEeccCccccceEEEEEEEeCCC
Q 045058            3 NLKLGVQVVGAHNLLPKDGKGSSSAFVELYFDG---QRFRTTIKENDLNPVWNESFYFNISDASKLHYLTLEAYIYNNIG   79 (1005)
Q Consensus         3 ~~~l~V~v~~a~~L~~~d~~g~~dpyv~v~~~~---~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~   79 (1005)
                      .+.|+|+|++|+||+.++..|.+||||+|++..   .+++|+++++++||+|||+|.|.+...+ +....|.|+|||++.
T Consensus        15 ~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~-l~~~~l~~~V~d~d~   93 (124)
T cd08385          15 SNQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFTFKVPYSE-LGNKTLVFSVYDFDR   93 (124)
T ss_pred             CCEEEEEEEEeeCCCCccCCCCCCCEEEEEEEcCCCCceecccCcCCCCCceeeeEEEeCCHHH-hCCCEEEEEEEeCCC
Confidence            478999999999999999889999999999843   4689999999999999999999986422 344689999999964


Q ss_pred             CCCCCcccEEEEEeCCcccCCCCceeeeEecc
Q 045058           80 DTNSRSFLGKVCLTGNSFVPLSDSVVLHYPLE  111 (1005)
Q Consensus        80 ~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~  111 (1005)
                       .+++++||++.+++.++... ...+.|++|+
T Consensus        94 -~~~~~~lG~~~i~l~~~~~~-~~~~~W~~l~  123 (124)
T cd08385          94 -FSKHDLIGEVRVPLLTVDLG-HVTEEWRDLE  123 (124)
T ss_pred             -CCCCceeEEEEEecCcccCC-CCcceEEEcc
Confidence             56899999999999998664 3446899985

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and

>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7

Probab=99.66  E-value=7.6e-16  Score=145.58  Aligned_cols=108  Identities=26%  Similarity=0.381  Sum_probs=91.1

Q ss_pred             CcEEEEEEEEeecCCCCCCCCCCCcEEEEEE---CCeEeeccccCCCCCCceeeEEEEEeccCccccceEEEEEEEeCCC
Q 045058            3 NLKLGVQVVGAHNLLPKDGKGSSSAFVELYF---DGQRFRTTIKENDLNPVWNESFYFNISDASKLHYLTLEAYIYNNIG   79 (1005)
Q Consensus         3 ~~~l~V~v~~a~~L~~~d~~g~~dpyv~v~~---~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~   79 (1005)
                      .+.|.|+|++|+||+.++..|.+||||+|++   ++.+.+|+++++++||+|||+|.|.+...+.+....|.|+|||++.
T Consensus        15 ~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~~P~Wne~f~f~~~~~~~l~~~~l~~~v~d~d~   94 (125)
T cd08386          15 ESTLTLKILKAVELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKLQQRVLYLQVLDYDR   94 (125)
T ss_pred             CCEEEEEEEEecCCCCccCCCCCCceEEEEECCCCCcceeeeeecCCCCCccceeEEEcccCHHHhCCCEEEEEEEeCCC
Confidence            5789999999999999998899999999998   3457899999999999999999998543333445689999999964


Q ss_pred             CCCCCcccEEEEEeCCcccCCCCceeeeEeccc
Q 045058           80 DTNSRSFLGKVCLTGNSFVPLSDSVVLHYPLEK  112 (1005)
Q Consensus        80 ~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~  112 (1005)
                       .+++++||++.+++.++..... ...|++|.+
T Consensus        95 -~~~~~~iG~~~i~l~~l~~~~~-~~~W~~l~~  125 (125)
T cd08386          95 -FSRNDPIGEVSLPLNKVDLTEE-QTFWKDLKP  125 (125)
T ss_pred             -CcCCcEeeEEEEecccccCCCC-cceEEecCC
Confidence             5689999999999999876443 458999863

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves

>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins

Probab=99.65  E-value=1.3e-15  Score=142.84  Aligned_cols=118  Identities=23%  Similarity=0.313  Sum_probs=95.2

Q ss_pred             EEEEEEEecCCCCCCCCCCCCCCCcEEEEEEC-CEEEEeeeccCCCCceeccEEEEEEeCCCceEEEEEEeCCCcCCCCC
Q 045058          598 LELGILNAVGLHPMKTRDGRGTSDTYCVAKYG-HKWVRTRTLVDNLSPKYNEQYTWEVFDPATVLTVGVFDNSQLGEKSN  676 (1005)
Q Consensus       598 l~v~i~~a~~L~~~~~~~~~~~~dpyv~~~~g-~~~~~T~~~~~t~nP~wne~f~~~v~~~~~~l~i~v~d~~~~~~~~~  676 (1005)
                      |+|+|++|++|+.+   +..+.+||||++.++ .+.+||+++++++||+|||.|.|++.. ...|.|+|||++.++.   
T Consensus         2 l~v~v~~A~~L~~~---~~~~~~dpyv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~-~~~l~i~V~d~~~~~~---   74 (123)
T cd08382           2 VRLTVLCADGLAKR---DLFRLPDPFAVITVDGGQTHSTDVAKKTLDPKWNEHFDLTVGP-SSIITIQVFDQKKFKK---   74 (123)
T ss_pred             eEEEEEEecCCCcc---CCCCCCCcEEEEEECCccceEccEEcCCCCCcccceEEEEeCC-CCEEEEEEEECCCCCC---
Confidence            78999999999965   457889999999996 667899999999999999999999965 7799999999987651   


Q ss_pred             CCCCcccEEEEEEcccccCCC-EEeeeEeeeecCCC-CCceeeEEEEEE
Q 045058          677 GNKDLKIGKVRIRISTLETGR-IYTHSYPLLVLHPT-GVKKMGELHLAI  723 (1005)
Q Consensus       677 ~~~d~~lG~~~i~l~~l~~~~-~~~~~~~L~~~~~~-~~~~~G~i~l~~  723 (1005)
                       ..|++||.+.++++++.... ....||+|...... .....|+|.+.+
T Consensus        75 -~~d~~lG~~~i~l~~l~~~~~~~~~~~~l~~~~~~~~~~~~G~v~~~~  122 (123)
T cd08382          75 -KDQGFLGCVRIRANAVLPLKDTGYQRLDLRKLKKSDNLSVRGKIVVSL  122 (123)
T ss_pred             -CCCceEeEEEEEHHHccccCCCccceeEeecCCCCCCceEeeEEEEEe
Confidence             12689999999999987554 33679999655442 222358887765

A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are

>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin

Probab=99.65  E-value=1.1e-15  Score=140.76  Aligned_cols=104  Identities=28%  Similarity=0.509  Sum_probs=91.0

Q ss_pred             eeEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeeecCCCCCeeeeEEEEeecCC----CCcEEEEEEEeCC-CC
Q 045058          269 MYFLYVRVVKARELPAMDLTGSIDPFVEVKIGNYKGITKHYEKNQNPQWHQVFAFSRDRM----QASVLEVVIKDKD-LV  343 (1005)
Q Consensus       269 ~~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~~~~~kT~~~~~~~nP~wne~f~f~~~~~----~~~~l~v~V~d~~-~~  343 (1005)
                      .+.|+|+|++|++|+    ++.+||||++++++++++|++++++.||.|||+|.|.+...    ....|.|+|||++ ++
T Consensus         3 ~~~l~V~v~~a~~L~----~~~~dpyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~~~~~   78 (111)
T cd04011           3 DFQVRVRVIEARQLV----GGNIDPVVKVEVGGQKKYTSVKKGTNCPFYNEYFFFNFHESPDELFDKIIKISVYDSRSLR   78 (111)
T ss_pred             cEEEEEEEEEcccCC----CCCCCCEEEEEECCEeeeeeEEeccCCCccccEEEEecCCCHHHHhcCeEEEEEEcCcccc
Confidence            478999999999998    57899999999999999999999999999999999987543    3468999999998 77


Q ss_pred             CCceeEEEEEEceecCCCCCCCCCCCCeEEEeecC
Q 045058          344 KDDFVGIVRFDINEVPLRVPPDSPLAPEWYRLEDK  378 (1005)
Q Consensus       344 ~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~  378 (1005)
                      ++++||++.++|.++...  +++.....|++|.++
T Consensus        79 ~~~~iG~~~i~l~~v~~~--~~~~~~~~w~~L~~~  111 (111)
T cd04011          79 SDTLIGSFKLDVGTVYDQ--PDHAFLRKWLLLTDP  111 (111)
T ss_pred             cCCccEEEEECCccccCC--CCCcceEEEEEeeCc
Confidence            899999999999999764  345678999999863

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme

>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin

Probab=99.65  E-value=2.1e-15  Score=142.72  Aligned_cols=114  Identities=20%  Similarity=0.362  Sum_probs=98.5

Q ss_pred             EEEecCCCCCCCCCCCCCCCcEEEEEECCEEEEeeeccCCCCceeccEEEEEEeCC---CceEEEEEEeCCCcCCCCCCC
Q 045058          602 ILNAVGLHPMKTRDGRGTSDTYCVAKYGHKWVRTRTLVDNLSPKYNEQYTWEVFDP---ATVLTVGVFDNSQLGEKSNGN  678 (1005)
Q Consensus       602 i~~a~~L~~~~~~~~~~~~dpyv~~~~g~~~~~T~~~~~t~nP~wne~f~~~v~~~---~~~l~i~v~d~~~~~~~~~~~  678 (1005)
                      |++|++|+.     ..|.+||||++.+++..++|++++++.||+|||.|.|++..+   ...|.|+|||++..+      
T Consensus         2 vi~a~~L~~-----~~g~~Dpyv~v~~~~~~~kT~v~~~~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~~~~------   70 (127)
T cd08373           2 VVSLKNLPG-----LKGKGDRIAKVTFRGVKKKTRVLENELNPVWNETFEWPLAGSPDPDESLEIVVKDYEKVG------   70 (127)
T ss_pred             eEEeeCCcc-----cCCCCCCEEEEEECCEeeecceeCCCcCCcccceEEEEeCCCcCCCCEEEEEEEECCCCC------
Confidence            688999985     467899999999999999999999999999999999999753   679999999998765      


Q ss_pred             CCcccEEEEEEcccccCCCEEeeeEeeeecCCCCCceeeEEEEEEEEeec
Q 045058          679 KDLKIGKVRIRISTLETGRIYTHSYPLLVLHPTGVKKMGELHLAIRFSCT  728 (1005)
Q Consensus       679 ~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~G~i~l~~~~~~~  728 (1005)
                      +|++||.+.++|+++..+.....|++|....  +....|+|+++++|.+.
T Consensus        71 ~d~~iG~~~~~l~~l~~~~~~~~~~~L~~~~--~~~~~~~l~l~~~~~~~  118 (127)
T cd08373          71 RNRLIGSATVSLQDLVSEGLLEVTEPLLDSN--GRPTGATISLEVSYQPP  118 (127)
T ss_pred             CCceEEEEEEEhhHcccCCceEEEEeCcCCC--CCcccEEEEEEEEEeCC
Confidence            8899999999999999888888999997433  22235999999998653

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin

Probab=99.65  E-value=1.1e-15  Score=146.51  Aligned_cols=104  Identities=20%  Similarity=0.253  Sum_probs=88.2

Q ss_pred             EEEEEEEEecCCCCCCCCC-----------CCCCCCcEEEEEECCEEEEeeeccCCCCceeccEEEEEEeCC--CceEEE
Q 045058          597 ILELGILNAVGLHPMKTRD-----------GRGTSDTYCVAKYGHKWVRTRTLVDNLSPKYNEQYTWEVFDP--ATVLTV  663 (1005)
Q Consensus       597 ~l~v~i~~a~~L~~~~~~~-----------~~~~~dpyv~~~~g~~~~~T~~~~~t~nP~wne~f~~~v~~~--~~~l~i  663 (1005)
                      .|.|+|++|++|+.+|...           ..+.+||||+|.++++..||+++++++||+|||+|.|++..+  ...|.|
T Consensus         1 ~~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~g~~~kT~v~~~t~nPvWNE~f~f~v~~p~~~~~l~~   80 (151)
T cd04018           1 RFIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFAGQKVKTSVKKNSYNPEWNEQIVFPEMFPPLCERIKI   80 (151)
T ss_pred             CeEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEECCEeeecceEcCCCCCCcceEEEEEeeCCCcCCEEEE
Confidence            3789999999999886321           235789999999999999999999999999999999998654  569999


Q ss_pred             EEEeCCCcCCCCCCCCCcccEEEEEEcccccCCCE-------EeeeEeee
Q 045058          664 GVFDNSQLGEKSNGNKDLKIGKVRIRISTLETGRI-------YTHSYPLL  706 (1005)
Q Consensus       664 ~v~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~-------~~~~~~L~  706 (1005)
                      +|||+|..+      +|++||++.|+|+++.....       -..|+.|.
T Consensus        81 ~v~D~d~~~------~dd~iG~~~l~l~~l~~~~~~~~lp~~~p~W~~ly  124 (151)
T cd04018          81 QIRDWDRVG------NDDVIGTHFIDLSKISNSGDEGFLPTFGPSFVNLY  124 (151)
T ss_pred             EEEECCCCC------CCCEEEEEEEeHHHhccCCccccCCccCceEEEee
Confidence            999999776      89999999999999876542       24777776

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd04041 C2A_fungal C2 domain first repeat; fungal group

Probab=99.65  E-value=7e-16  Score=141.96  Aligned_cols=99  Identities=23%  Similarity=0.352  Sum_probs=85.7

Q ss_pred             eEEEEEEEEecCCCCCCCCCCC-CCCCcEEEEEEC---CEEEEeeeccCCCCceeccEEEEEEeC----CCceEEEEEEe
Q 045058          596 GILELGILNAVGLHPMKTRDGR-GTSDTYCVAKYG---HKWVRTRTLVDNLSPKYNEQYTWEVFD----PATVLTVGVFD  667 (1005)
Q Consensus       596 g~l~v~i~~a~~L~~~~~~~~~-~~~dpyv~~~~g---~~~~~T~~~~~t~nP~wne~f~~~v~~----~~~~l~i~v~d  667 (1005)
                      |.|+|+|++|+||++++   .. +.+||||++.+.   ....+|+++++++||+|||.|.|.+..    ....|.|+|||
T Consensus         1 G~L~V~v~~a~~L~~~d---~~~~~~Dpyv~v~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d   77 (111)
T cd04041           1 GVLVVTIHRATDLPKAD---FGTGSSDPYVTASFAKFGKPLYSTRIIRKDLNPVWEETWFVLVTPDEVKAGERLSCRLWD   77 (111)
T ss_pred             CEEEEEEEEeeCCCccc---CCCCCCCccEEEEEccCCCccEeeeeECCCCCCccceeEEEEeCchhccCCCEEEEEEEe
Confidence            78999999999999764   45 789999999983   346899999999999999999998864    35689999999


Q ss_pred             CCCcCCCCCCCCCcccEEEEEEcccccCCCEEeeeEeee
Q 045058          668 NSQLGEKSNGNKDLKIGKVRIRISTLETGRIYTHSYPLL  706 (1005)
Q Consensus       668 ~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~  706 (1005)
                      ++.++      +|++||.+.++|++|...   .+|+++.
T Consensus        78 ~d~~~------~dd~lG~~~i~l~~l~~~---~~~~~~~  107 (111)
T cd04041          78 SDRFT------ADDRLGRVEIDLKELIED---RNWMGRR  107 (111)
T ss_pred             CCCCC------CCCcceEEEEEHHHHhcC---CCCCccc
Confidence            99776      899999999999999854   4788885

C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan

>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group

Probab=99.65  E-value=2.9e-15  Score=141.83  Aligned_cols=117  Identities=21%  Similarity=0.286  Sum_probs=97.3

Q ss_pred             cEEEEEEEEeecCCCCCCCCCCCcEEEEEECC---eEeeccccCCCCCCceeeEEEEEeccCccccceEEEEEEEeCCCC
Q 045058            4 LKLGVQVVGAHNLLPKDGKGSSSAFVELYFDG---QRFRTTIKENDLNPVWNESFYFNISDASKLHYLTLEAYIYNNIGD   80 (1005)
Q Consensus         4 ~~l~V~v~~a~~L~~~d~~g~~dpyv~v~~~~---~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~~   80 (1005)
                      ..|+|+|++|++|+.++..|.+||||+|.+.+   ..+||+++++++||+|||+|.|.+....   ...|.|+|||++. 
T Consensus         1 ~~~~V~v~~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~~~~~t~~P~Wne~f~f~i~~~~---~~~L~i~v~d~d~-   76 (126)
T cd04043           1 HLFTIRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEEFELEVPAGE---PLWISATVWDRSF-   76 (126)
T ss_pred             CEEEEEEEEeECCCCCCCCCCCCceEEEEECCCCeeeecccEecCCCCCcccceEEEEcCCCC---CCEEEEEEEECCC-
Confidence            36899999999999999999999999999864   3689999999999999999999986642   3589999999954 


Q ss_pred             CCCCcccEEEEEeCCcccCC--CCceeeeEecccCCCcceeeeEEEEEEEEec
Q 045058           81 TNSRSFLGKVCLTGNSFVPL--SDSVVLHYPLEKRGIFSHVRGELGLKVYITD  131 (1005)
Q Consensus        81 ~~~d~~lG~~~i~l~~l~~~--~~~~~~w~~L~~~~~~~~~~G~i~l~~~~~~  131 (1005)
                      .+++++||++.++|.++...  +.....|++|.+       +|++++.+.+..
T Consensus        77 ~~~~~~iG~~~i~l~~~~~~~~~~~~~~w~~l~~-------~g~i~l~~~~~~  122 (126)
T cd04043          77 VGKHDLCGRASLKLDPKRFGDDGLPREIWLDLDT-------QGRLLLRVSMEG  122 (126)
T ss_pred             CCCCceEEEEEEecCHHHcCCCCCCceEEEEcCC-------CCeEEEEEEEee
Confidence            45899999999999886432  334468999964       588998887765

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap

>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins

Probab=99.65  E-value=1.2e-15  Score=144.65  Aligned_cols=107  Identities=29%  Similarity=0.418  Sum_probs=90.4

Q ss_pred             CcEEEEEEEEeecCCCCCCCCCCCcEEEEEEC-----CeEeeccccCCCCCCceeeEEEEEeccCccccceEEEEEEEeC
Q 045058            3 NLKLGVQVVGAHNLLPKDGKGSSSAFVELYFD-----GQRFRTTIKENDLNPVWNESFYFNISDASKLHYLTLEAYIYNN   77 (1005)
Q Consensus         3 ~~~l~V~v~~a~~L~~~d~~g~~dpyv~v~~~-----~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~   77 (1005)
                      .+.|+|+|++|+||+.++..+.+||||+|++.     ..+++|++++++.||+|||+|.|.+...+ +....|.|.|||+
T Consensus        15 ~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~~~nP~wne~f~f~i~~~~-l~~~~l~i~v~~~   93 (127)
T cd04030          15 RQKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFDETFEFPVSLEE-LKRRTLDVAVKNS   93 (127)
T ss_pred             CCEEEEEEEEEECCCCccCCCCCCceEEEEEEcCCCCCceEecccccCCCCCEECeEEEEecCHHH-hcCCEEEEEEEEC
Confidence            47899999999999999988999999999984     35789999999999999999999986432 4456899999998


Q ss_pred             CCC-CCCCcccEEEEEeCCcccCCCCceeeeEecc
Q 045058           78 IGD-TNSRSFLGKVCLTGNSFVPLSDSVVLHYPLE  111 (1005)
Q Consensus        78 ~~~-~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~  111 (1005)
                      +.. .+++++||++.+++.++.... ....||+|+
T Consensus        94 ~~~~~~~~~~iG~~~i~l~~l~~~~-~~~~W~~L~  127 (127)
T cd04030          94 KSFLSREKKLLGQVLIDLSDLDLSK-GFTQWYDLT  127 (127)
T ss_pred             CcccCCCCceEEEEEEecccccccC-CccceEECc
Confidence            643 258999999999999986544 345799984

KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1

>cd08680 C2_Kibra C2 domain found in Human protein Kibra

Probab=99.64  E-value=1.2e-15  Score=141.81  Aligned_cols=111  Identities=19%  Similarity=0.309  Sum_probs=93.3

Q ss_pred             ceeeeccccceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC------eeeeeeeecCCCCCeeeeEEEEeec--CCCC
Q 045058          259 TASTYDLVERMYFLYVRVVKARELPAMDLTGSIDPFVEVKIGN------YKGITKHYEKNQNPQWHQVFAFSRD--RMQA  330 (1005)
Q Consensus       259 ~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~~------~~~kT~~~~~~~nP~wne~f~f~~~--~~~~  330 (1005)
                      ++..|+.  ..+.|.|+|++|+||+..+..+.+||||++++.+      .++||++++++.||+|||+|.|++.  ++..
T Consensus         5 ~sL~Y~~--~~~~L~V~V~~arnL~~~~~~~~~dpyVKv~Llp~~~~~~~~~kT~v~~~t~nPvfnE~F~f~v~~~~L~~   82 (124)
T cd08680           5 IGLRYDS--GDSSLVISVEQLRNLSALSIPENSKVYVRVALLPCSSSTSCLFRTKALEDQDKPVFNEVFRVPISSTKLYQ   82 (124)
T ss_pred             EEEEECC--CCCEEEEEEeEecCCcccccCCCCCeEEEEEEccCCCCCCceEEcCccCCCCCCccccEEEEECCHHHhhc
Confidence            4455554  4488999999999999998889999999999864      2578999999999999999999975  4567


Q ss_pred             cEEEEEEEeCC-CCCCceeEEEEEEceecCCCCCCCCCCCCeEEEe
Q 045058          331 SVLEVVIKDKD-LVKDDFVGIVRFDINEVPLRVPPDSPLAPEWYRL  375 (1005)
Q Consensus       331 ~~l~v~V~d~~-~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L  375 (1005)
                      ..|.|+|||++ .+++++||++.|+|.++....    .....||+|
T Consensus        83 ~~L~~~V~~~~~~~~~~~lG~~~i~L~~~~~~~----~~~~~Wy~l  124 (124)
T cd08680          83 KTLQVDVCSVGPDQQEECLGGAQISLADFESSE----EMSTKWYNL  124 (124)
T ss_pred             CEEEEEEEeCCCCCceeEEEEEEEEhhhccCCC----ccccccccC
Confidence            89999999999 678999999999999996542    346789875

Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom

>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins

Probab=99.64  E-value=1.1e-15  Score=144.46  Aligned_cols=118  Identities=19%  Similarity=0.342  Sum_probs=97.3

Q ss_pred             EEEEEEEEeecCCCCCCCCCCCcEEEEEECC-eEeeccccC-CCCCCceeeEEEEEeccCcc-ccceEEEEEEEeCCCCC
Q 045058            5 KLGVQVVGAHNLLPKDGKGSSSAFVELYFDG-QRFRTTIKE-NDLNPVWNESFYFNISDASK-LHYLTLEAYIYNNIGDT   81 (1005)
Q Consensus         5 ~l~V~v~~a~~L~~~d~~g~~dpyv~v~~~~-~~~~T~v~~-~t~nP~Wne~f~f~v~~~~~-~~~~~l~v~V~d~~~~~   81 (1005)
                      .|+|+|++|++|+..+..+.+||||+|++++ ++++|++.. ++.||+|||.|.|.+..... .....|.|+|||++. .
T Consensus         1 ~L~V~V~sA~~L~~~~~~~~~dpYv~v~~~~~~~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~~-~   79 (125)
T cd04051           1 TLEITIISAEDLKNVNLFGKMKVYAVVWIDPSHKQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCERP-S   79 (125)
T ss_pred             CEEEEEEEcccCCCCCcccCCceEEEEEECCCcccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEECCC-C
Confidence            3899999999999998889999999999988 789999875 68999999999999865420 123689999999854 4


Q ss_pred             CCCcccEEEEEeCCcccCCCCc----eeeeEecccCCCcceeeeEEEE
Q 045058           82 NSRSFLGKVCLTGNSFVPLSDS----VVLHYPLEKRGIFSHVRGELGL  125 (1005)
Q Consensus        82 ~~d~~lG~~~i~l~~l~~~~~~----~~~w~~L~~~~~~~~~~G~i~l  125 (1005)
                      ++|++||++.+++.++......    ...||+|.++++  +.+|.|++
T Consensus        80 ~~~~~lG~~~i~l~~l~~~~~~~~~~~~~~~~l~~~~g--~~~G~~~~  125 (125)
T cd04051          80 LGDKLIGEVRVPLKDLLDGASPAGELRFLSYQLRRPSG--KPQGVLNF  125 (125)
T ss_pred             CCCCcEEEEEEEHHHhhcccCCCCcceeEEEEeECCCC--CcCeEEeC
Confidence            5899999999999998765542    357999998764  67898864

SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such

>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family

Probab=99.63  E-value=8.9e-16  Score=142.40  Aligned_cols=102  Identities=21%  Similarity=0.312  Sum_probs=86.8

Q ss_pred             ceEEEEEEEEecCCCCCCCCCCCCCCCcEEEEEECC-----EEEEeeeccCCCCceeccEEEEEEeC--CCceEEEEEEe
Q 045058          595 IGILELGILNAVGLHPMKTRDGRGTSDTYCVAKYGH-----KWVRTRTLVDNLSPKYNEQYTWEVFD--PATVLTVGVFD  667 (1005)
Q Consensus       595 ~g~l~v~i~~a~~L~~~~~~~~~~~~dpyv~~~~g~-----~~~~T~~~~~t~nP~wne~f~~~v~~--~~~~l~i~v~d  667 (1005)
                      .+.|.|+|++|+||++++    .|.+||||++.+.+     .+.||+++.++.||+|||+|.|++..  ....|.|+|||
T Consensus        11 ~~~L~V~Vi~ar~L~~~~----~g~~dpYVkv~l~p~~~~~~~~kT~v~~~t~~P~~nE~F~f~v~~~~~~~~l~v~V~~   86 (119)
T cd08685          11 NRKLTLHVLEAKGLRSTN----SGTCNSYVKISLSPDKEVRFRQKTSTVPDSANPLFHETFSFDVNERDYQKRLLVTVWN   86 (119)
T ss_pred             CCEEEEEEEEEECCCCCC----CCCCCeeEEEEEEeCCCCcceEeCccccCCCCCccccEEEEEcChHHhCCEEEEEEEC
Confidence            378999999999999764    57899999999953     35699999999999999999999864  24579999999


Q ss_pred             CCCcCCCCCCCCCcccEEEEEEcccccCCCEEeeeEee
Q 045058          668 NSQLGEKSNGNKDLKIGKVRIRISTLETGRIYTHSYPL  705 (1005)
Q Consensus       668 ~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L  705 (1005)
                      ++...     ..+++||.+.|+|.++..+.....||.|
T Consensus        87 ~~~~~-----~~~~~lG~~~i~l~~~~~~~~~~~Wy~l  119 (119)
T cd08685          87 KLSKS-----RDSGLLGCMSFGVKSIVNQKEISGWYYL  119 (119)
T ss_pred             CCCCc-----CCCEEEEEEEecHHHhccCccccceEeC
Confidence            97643     2478999999999999888778899986

This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho

>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD)

Probab=99.63  E-value=2.5e-15  Score=136.61  Aligned_cols=93  Identities=19%  Similarity=0.302  Sum_probs=81.7

Q ss_pred             eEEEEEEEEeecCCCCCCC----CCCCcEEEEEECCeeeeeeeecCCCCCeeeeEEEEeecCC-CCcEEEEEEEeCC-CC
Q 045058          270 YFLYVRVVKARELPAMDLT----GSIDPFVEVKIGNYKGITKHYEKNQNPQWHQVFAFSRDRM-QASVLEVVIKDKD-LV  343 (1005)
Q Consensus       270 ~~L~V~v~~a~~L~~~~~~----g~~dPyv~v~~~~~~~kT~~~~~~~nP~wne~f~f~~~~~-~~~~l~v~V~d~~-~~  343 (1005)
                      |+|.|+|++|++|+..+..    +.+||||+++++++.+||++++++.||+|||.|.|.+.+. ....|.|+|||++ .+
T Consensus         1 g~l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~~~~~~kT~v~~~t~nPvWne~f~f~v~~~~~~~~L~~~V~D~d~~~   80 (108)
T cd04039           1 GVVFMEIKSITDLPPLKNMTRTGFDMDPFVIISFGRRVFRTSWRRHTLNPVFNERLAFEVYPHEKNFDIQFKVLDKDKFS   80 (108)
T ss_pred             CEEEEEEEeeeCCCCccccCCCCCccCceEEEEECCEeEeeeeecCCCCCcccceEEEEEeCccCCCEEEEEEEECCCCC
Confidence            5799999999999987632    3589999999999889999999999999999999987543 3358999999999 78


Q ss_pred             CCceeEEEEEEceecCCCC
Q 045058          344 KDDFVGIVRFDINEVPLRV  362 (1005)
Q Consensus       344 ~d~~lG~~~i~l~~l~~~~  362 (1005)
                      +|++||++.++|.++..+.
T Consensus        81 ~dd~IG~~~l~L~~l~~~~   99 (108)
T cd04039          81 FNDYVATGSLSVQELLNAA   99 (108)
T ss_pred             CCcceEEEEEEHHHHHhhC
Confidence            9999999999999998764

PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM

>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs)

Probab=99.63  E-value=3.7e-15  Score=139.21  Aligned_cols=115  Identities=26%  Similarity=0.427  Sum_probs=90.7

Q ss_pred             EEEEEEEeecCCCCCCCCCCCcEEEEEECCe-EeeccccCCCCCCceeeEEEEEeccCccccceEEEEEEEeCCCCCCCC
Q 045058            6 LGVQVVGAHNLLPKDGKGSSSAFVELYFDGQ-RFRTTIKENDLNPVWNESFYFNISDASKLHYLTLEAYIYNNIGDTNSR   84 (1005)
Q Consensus         6 l~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~-~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~~~~~d   84 (1005)
                      |.|+|++|+||+.+   |.+||||+|+++++ .++|+++++ .||+|||+|.|.+...+ .....|.|.+||++ ...++
T Consensus         2 L~v~vi~a~~l~~~---~~~dpyv~v~~~~~~~~kT~~~~~-~~P~Wne~f~f~v~~~~-~~~~~l~i~v~d~~-~~~~~   75 (117)
T cd08383           2 LRLRILEAKNLPSK---GTRDPYCTVSLDQVEVARTKTVEK-LNPFWGEEFVFDDPPPD-VTFFTLSFYNKDKR-SKDRD   75 (117)
T ss_pred             eEEEEEEecCCCcC---CCCCceEEEEECCEEeEecceEEC-CCCcccceEEEecCCcc-ccEEEEEEEEEecc-cCCCe
Confidence            78999999999876   78999999999986 479999988 99999999999986543 34468889999984 33466


Q ss_pred             cccEEEEEeCCcccCCCCceeeeEecccCCCcceeeeEEEEEEEE
Q 045058           85 SFLGKVCLTGNSFVPLSDSVVLHYPLEKRGIFSHVRGELGLKVYI  129 (1005)
Q Consensus        85 ~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~  129 (1005)
                      .++|.+.|.  .+.. +...+.||+|.++.......|+|++++.|
T Consensus        76 ~~~g~v~l~--~~~~-~~~~~~w~~L~~~~~~~~~~G~l~l~~~~  117 (117)
T cd08383          76 IVIGKVALS--KLDL-GQGKDEWFPLTPVDPDSEVQGSVRLRARY  117 (117)
T ss_pred             eEEEEEEec--CcCC-CCcceeEEECccCCCCCCcCceEEEEEEC
Confidence            777776655  4333 33446899999876556788999999864

RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2

>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17

Probab=99.62  E-value=2.9e-15  Score=141.22  Aligned_cols=107  Identities=22%  Similarity=0.360  Sum_probs=90.5

Q ss_pred             CcEEEEEEEEeecCCCCC-CCCCCCcEEEEEEC---CeEeeccccCCCCCCceeeEEEEEeccCccccceEEEEEEEeCC
Q 045058            3 NLKLGVQVVGAHNLLPKD-GKGSSSAFVELYFD---GQRFRTTIKENDLNPVWNESFYFNISDASKLHYLTLEAYIYNNI   78 (1005)
Q Consensus         3 ~~~l~V~v~~a~~L~~~d-~~g~~dpyv~v~~~---~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~   78 (1005)
                      .+.|.|+|++|+||+.++ ..+.+||||+|++.   ...++|+++++++||+|||+|.|.+...+ ++...|.|.|||++
T Consensus        13 ~~~L~V~v~~a~~L~~~~~~~~~~dpyV~v~l~~~~~~~~~T~v~~~~~~P~wne~f~f~i~~~~-l~~~~l~i~v~d~~   91 (123)
T cd08390          13 EEQLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDERRSLQSKVKRKTQNPNFDETFVFQVSFKE-LQRRTLRLSVYDVD   91 (123)
T ss_pred             CCEEEEEEEEecCCCCccCCCCCCCcEEEEEEeeCCCCceEeeeEcCCCCCccceEEEEEcCHHH-hcccEEEEEEEECC
Confidence            478999999999999998 68899999999983   34689999999999999999999986532 33468999999986


Q ss_pred             CCCCCCcccEEEEEeCCcccCCCCceeeeEeccc
Q 045058           79 GDTNSRSFLGKVCLTGNSFVPLSDSVVLHYPLEK  112 (1005)
Q Consensus        79 ~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~  112 (1005)
                      . .+++++||++.++|.++...... ..|++|++
T Consensus        92 ~-~~~~~~iG~~~i~L~~l~~~~~~-~~w~~L~~  123 (123)
T cd08390          92 R-FSRHCIIGHVLFPLKDLDLVKGG-VVWRDLEP  123 (123)
T ss_pred             c-CCCCcEEEEEEEeccceecCCCc-eEEEeCCC
Confidence            4 45899999999999998776654 57999974

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat

>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin

Probab=99.62  E-value=2.2e-15  Score=144.54  Aligned_cols=106  Identities=20%  Similarity=0.254  Sum_probs=87.2

Q ss_pred             EEEEEEEEeecCCCCCCC--------------CCCCcEEEEEECCeEeeccccCCCCCCceeeEEEEEeccCccccceEE
Q 045058            5 KLGVQVVGAHNLLPKDGK--------------GSSSAFVELYFDGQRFRTTIKENDLNPVWNESFYFNISDASKLHYLTL   70 (1005)
Q Consensus         5 ~l~V~v~~a~~L~~~d~~--------------g~~dpyv~v~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~~~~l   70 (1005)
                      .|.|+|++|++|+.+|..              +.+||||+|.+++++.+|+++++++||+|||+|.|.+..++.  ...|
T Consensus         1 ~~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~g~~~kT~v~~~t~nPvWNE~f~f~v~~p~~--~~~l   78 (151)
T cd04018           1 RFIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFAGQKVKTSVKKNSYNPEWNEQIVFPEMFPPL--CERI   78 (151)
T ss_pred             CeEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEECCEeeecceEcCCCCCCcceEEEEEeeCCCc--CCEE
Confidence            478999999999998854              378999999999999999999999999999999999754331  3589


Q ss_pred             EEEEEeCCCCCCCCcccEEEEEeCCcccCCCCc------eeeeEecccC
Q 045058           71 EAYIYNNIGDTNSRSFLGKVCLTGNSFVPLSDS------VVLHYPLEKR  113 (1005)
Q Consensus        71 ~v~V~d~~~~~~~d~~lG~~~i~l~~l~~~~~~------~~~w~~L~~~  113 (1005)
                      .|+|||++. .++|++||++.+++.++...+..      ...|+.|-..
T Consensus        79 ~~~v~D~d~-~~~dd~iG~~~l~l~~l~~~~~~~~lp~~~p~W~~lyg~  126 (151)
T cd04018          79 KIQIRDWDR-VGNDDVIGTHFIDLSKISNSGDEGFLPTFGPSFVNLYGS  126 (151)
T ss_pred             EEEEEECCC-CCCCCEEEEEEEeHHHhccCCccccCCccCceEEEeecC
Confidence            999999964 46999999999999998765532      2356666543

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10

Probab=99.62  E-value=3.8e-15  Score=140.52  Aligned_cols=111  Identities=33%  Similarity=0.496  Sum_probs=93.9

Q ss_pred             ceeeeccccceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC---eeeeeeeecCCCCCeeeeEEEEeecC--CCCcEE
Q 045058          259 TASTYDLVERMYFLYVRVVKARELPAMDLTGSIDPFVEVKIGN---YKGITKHYEKNQNPQWHQVFAFSRDR--MQASVL  333 (1005)
Q Consensus       259 ~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~~---~~~kT~~~~~~~nP~wne~f~f~~~~--~~~~~l  333 (1005)
                      ++..|+.  ..+.|.|+|++|+||+..+..+.+||||++++.+   ..++|++++++.||.|||+|.|.+..  +....|
T Consensus         7 ~~l~y~~--~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l   84 (124)
T cd08385           7 FSLDYDF--QSNQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFTFKVPYSELGNKTL   84 (124)
T ss_pred             EEEEEeC--CCCEEEEEEEEeeCCCCccCCCCCCCEEEEEEEcCCCCceecccCcCCCCCceeeeEEEeCCHHHhCCCEE
Confidence            4445544  4488999999999999999889999999999864   35689999999999999999999753  345689


Q ss_pred             EEEEEeCC-CCCCceeEEEEEEceecCCCCCCCCCCCCeEEEee
Q 045058          334 EVVIKDKD-LVKDDFVGIVRFDINEVPLRVPPDSPLAPEWYRLE  376 (1005)
Q Consensus       334 ~v~V~d~~-~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~  376 (1005)
                      .|+|||++ ++++++||++.+++.++..+     ....+|++|+
T Consensus        85 ~~~V~d~d~~~~~~~lG~~~i~l~~~~~~-----~~~~~W~~l~  123 (124)
T cd08385          85 VFSVYDFDRFSKHDLIGEVRVPLLTVDLG-----HVTEEWRDLE  123 (124)
T ss_pred             EEEEEeCCCCCCCceeEEEEEecCcccCC-----CCcceEEEcc
Confidence            99999998 77899999999999998764     4578999986

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and

>cd04032 C2_Perforin C2 domain of Perforin

Probab=99.62  E-value=3e-15  Score=139.21  Aligned_cols=94  Identities=21%  Similarity=0.319  Sum_probs=83.2

Q ss_pred             CcceEEEEEEEEecCCCCCCCCCCCCCCCcEEEEEECCEEEEeeeccCCCCceeccEEEEEEeC--CCceEEEEEEeCCC
Q 045058          593 PSIGILELGILNAVGLHPMKTRDGRGTSDTYCVAKYGHKWVRTRTLVDNLSPKYNEQYTWEVFD--PATVLTVGVFDNSQ  670 (1005)
Q Consensus       593 ~~~g~l~v~i~~a~~L~~~~~~~~~~~~dpyv~~~~g~~~~~T~~~~~t~nP~wne~f~~~v~~--~~~~l~i~v~d~~~  670 (1005)
                      ...|.|+|+|++|+||+.    +..+.+||||+|+++++.+||+++++++||+|||+|.|....  ....|.|+|||++.
T Consensus        25 ~~~~~L~V~V~~A~~L~~----d~~g~~DPYVkV~~~~~~~kT~vi~~t~nPvWNE~F~f~~~~~~~~~~L~v~V~D~d~  100 (127)
T cd04032          25 RGLATLTVTVLRATGLWG----DYFTSTDGYVKVFFGGQEKRTEVIWNNNNPRWNATFDFGSVELSPGGKLRFEVWDRDN  100 (127)
T ss_pred             CCcEEEEEEEEECCCCCc----CcCCCCCeEEEEEECCccccCceecCCCCCcCCCEEEEecccCCCCCEEEEEEEeCCC
Confidence            567999999999999973    456789999999999999999999999999999999998543  46799999999997


Q ss_pred             cCCCCCCCCCcccEEEEEEcccccCC
Q 045058          671 LGEKSNGNKDLKIGKVRIRISTLETG  696 (1005)
Q Consensus       671 ~~~~~~~~~d~~lG~~~i~l~~l~~~  696 (1005)
                      ++      +|++||++.++|.....+
T Consensus       101 ~s------~dd~IG~~~i~l~~~~~~  120 (127)
T cd04032         101 GW------DDDLLGTCSVVPEAGVHE  120 (127)
T ss_pred             CC------CCCeeEEEEEEecCCcee
Confidence            76      899999999999976644

Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few

>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene

Probab=99.62  E-value=3.7e-15  Score=140.52  Aligned_cols=109  Identities=18%  Similarity=0.190  Sum_probs=92.6

Q ss_pred             cEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEeeccccCC-CCCCceeeEEEEEeccCccccceEEEEEEEeCCCCCC
Q 045058            4 LKLGVQVVGAHNLLPKDGKGSSSAFVELYFDGQRFRTTIKEN-DLNPVWNESFYFNISDASKLHYLTLEAYIYNNIGDTN   82 (1005)
Q Consensus         4 ~~l~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~T~v~~~-t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~~~~   82 (1005)
                      |.|.|+|++|+||+..+..+.+||||+|+++++.++|++..+ +.||+|||+|.|.+..........|.|+|||++. .+
T Consensus         1 g~L~V~V~~A~~L~~~~~~~~~dpyv~v~~~~~~~~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~-~~   79 (124)
T cd04049           1 GTLEVLLISAKGLQDTDFLGKIDPYVIIQCRTQERKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKDN-FS   79 (124)
T ss_pred             CeEEEEEEecCCCCCCCCCCCcCceEEEEECCEeeeeeEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEECcc-CC
Confidence            579999999999999888889999999999999899998774 8999999999999976532123589999999954 55


Q ss_pred             CCcccEEEEEeCCcccCCCCceeeeEecccCC
Q 045058           83 SRSFLGKVCLTGNSFVPLSDSVVLHYPLEKRG  114 (1005)
Q Consensus        83 ~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~  114 (1005)
                      +|++||++.+++.++...+.. +.|++|.+.+
T Consensus        80 ~d~~iG~~~i~l~~l~~~~~~-~~~~~l~p~~  110 (124)
T cd04049          80 DDDFIGEATIHLKGLFEEGVE-PGTAELVPAK  110 (124)
T ss_pred             CCCeEEEEEEEhHHhhhCCCC-cCceEeeccc
Confidence            899999999999998765543 5799998763

In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai

>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins

Probab=99.62  E-value=3.4e-15  Score=140.76  Aligned_cols=105  Identities=30%  Similarity=0.427  Sum_probs=88.2

Q ss_pred             CcEEEEEEEEeecCCCCC-CCCCCCcEEEEEECC-----eEeeccccCCCCCCceeeEEEEEeccCccccceEEEEEEEe
Q 045058            3 NLKLGVQVVGAHNLLPKD-GKGSSSAFVELYFDG-----QRFRTTIKENDLNPVWNESFYFNISDASKLHYLTLEAYIYN   76 (1005)
Q Consensus         3 ~~~l~V~v~~a~~L~~~d-~~g~~dpyv~v~~~~-----~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d   76 (1005)
                      .+.|.|+|++|+||+.++ ..|.+||||+|++..     .+++|++++++.||+|||+|.|.+...+ +....|.|.|||
T Consensus        13 ~~~L~V~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~i~~~~-l~~~~l~i~v~d   91 (123)
T cd08521          13 TGSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRKTSVKKNTTNPVFNETLKYHISKSQ-LETRTLQLSVWH   91 (123)
T ss_pred             CCEEEEEEEEecCCCCcCCCCCCCCcEEEEEEecCCCcCceeeccccCCCCCCcccceEEEeCCHHH-hCCCEEEEEEEe
Confidence            478999999999999988 778999999999831     4689999999999999999999986532 345689999999


Q ss_pred             CCCCCCCCcccEEEEEeCCcccCCCCceeeeEec
Q 045058           77 NIGDTNSRSFLGKVCLTGNSFVPLSDSVVLHYPL  110 (1005)
Q Consensus        77 ~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L  110 (1005)
                      ++. .+++++||++.++|.++..... ...||+|
T Consensus        92 ~~~-~~~~~~iG~~~i~l~~l~~~~~-~~~w~~l  123 (123)
T cd08521          92 HDR-FGRNTFLGEVEIPLDSWDLDSQ-QSEWYPL  123 (123)
T ss_pred             CCC-CcCCceeeEEEEecccccccCC-CccEEEC
Confidence            854 4588999999999999965443 4679987

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into

>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.61  E-value=8.1e-16  Score=166.94  Aligned_cols=120  Identities=28%  Similarity=0.488  Sum_probs=106.1

Q ss_pred             cEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEeeccccCCCCCCceeeEEEEEeccCccccceEEEEEEEeCCCC---
Q 045058            4 LKLGVQVVGAHNLLPKDGKGSSSAFVELYFDGQRFRTTIKENDLNPVWNESFYFNISDASKLHYLTLEAYIYNNIGD---   80 (1005)
Q Consensus         4 ~~l~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~~---   80 (1005)
                      ..++++|++|.||..+|++|++||||.+.+++.+.||+++...+||+|||.|.|+..+..    ..|.++|||.|+.   
T Consensus       295 akitltvlcaqgl~akdktg~sdpyvt~qv~ktkrrtrti~~~lnpvw~ekfhfechnst----drikvrvwded~dlks  370 (1283)
T KOG1011|consen  295 AKITLTVLCAQGLIAKDKTGKSDPYVTAQVGKTKRRTRTIHQELNPVWNEKFHFECHNST----DRIKVRVWDEDNDLKS  370 (1283)
T ss_pred             eeeEEeeeecccceecccCCCCCCcEEEeecccchhhHhhhhccchhhhhheeeeecCCC----ceeEEEEecCcccHHH
Confidence            689999999999999999999999999999999999999999999999999999997765    4899999998654   


Q ss_pred             -------CCCCcccEEEEEeCCcccCCCCceeeeEecccCCCcceeeeEEEEEEEEe
Q 045058           81 -------TNSRSFLGKVCLTGNSFVPLSDSVVLHYPLEKRGIFSHVRGELGLKVYIT  130 (1005)
Q Consensus        81 -------~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~~  130 (1005)
                             ..+|+|||+..|.+..|.   ..++.||.|+++..++.++|-|++.+.+.
T Consensus       371 klrqkl~resddflgqtvievrtls---gemdvwynlekrtdksavsgairlhisve  424 (1283)
T KOG1011|consen  371 KLRQKLTRESDDFLGQTVIEVRTLS---GEMDVWYNLEKRTDKSAVSGAIRLHISVE  424 (1283)
T ss_pred             HHHHHhhhcccccccceeEEEEecc---cchhhhcchhhccchhhccceEEEEEEEE
Confidence                   236899999999977763   34468999999999999999998877654

>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP)

Probab=99.61  E-value=4.6e-15  Score=141.84  Aligned_cols=92  Identities=30%  Similarity=0.518  Sum_probs=84.2

Q ss_pred             ceEEEEEEEEecCCCCCCCCCCCCCCCcEEEEEECCEEEEeeeccCCCCceeccEEEEEEeCCCceEEEEEEeCCCcCCC
Q 045058          595 IGILELGILNAVGLHPMKTRDGRGTSDTYCVAKYGHKWVRTRTLVDNLSPKYNEQYTWEVFDPATVLTVGVFDNSQLGEK  674 (1005)
Q Consensus       595 ~g~l~v~i~~a~~L~~~~~~~~~~~~dpyv~~~~g~~~~~T~~~~~t~nP~wne~f~~~v~~~~~~l~i~v~d~~~~~~~  674 (1005)
                      +|.|+|+|++|+||+..+   . +.+||||++.+|++.++|+++++++||+|||.|.|.+.++...|.|+|||++.++  
T Consensus         1 ~G~L~V~Vi~a~nL~~~d---~-~~sDPYV~v~~g~~~~kT~vvk~t~nP~WnE~f~f~i~~~~~~l~~~V~D~d~~~--   74 (145)
T cd04038           1 LGLLKVRVVRGTNLAVRD---F-TSSDPYVVLTLGNQKVKTRVIKKNLNPVWNEELTLSVPNPMAPLKLEVFDKDTFS--   74 (145)
T ss_pred             CeEEEEEEEeeECCCCCC---C-CCcCcEEEEEECCEEEEeeeEcCCCCCeecccEEEEecCCCCEEEEEEEECCCCC--
Confidence            489999999999998653   3 7899999999999999999999999999999999999999889999999999876  


Q ss_pred             CCCCCCcccEEEEEEcccccCC
Q 045058          675 SNGNKDLKIGKVRIRISTLETG  696 (1005)
Q Consensus       675 ~~~~~d~~lG~~~i~l~~l~~~  696 (1005)
                          +|++||.+.+++.++...
T Consensus        75 ----~dd~iG~a~i~l~~l~~~   92 (145)
T cd04038          75 ----KDDSMGEAEIDLEPLVEA   92 (145)
T ss_pred             ----CCCEEEEEEEEHHHhhhh
Confidence                899999999999887653

ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i

>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene

Probab=99.61  E-value=5.1e-15  Score=139.56  Aligned_cols=102  Identities=23%  Similarity=0.364  Sum_probs=91.4

Q ss_pred             eEEEEEEEEecCCCCCCCCCCCCCCCcEEEEEECCEEEEeeeccC-CCCceeccEEEEEEeCC----CceEEEEEEeCCC
Q 045058          596 GILELGILNAVGLHPMKTRDGRGTSDTYCVAKYGHKWVRTRTLVD-NLSPKYNEQYTWEVFDP----ATVLTVGVFDNSQ  670 (1005)
Q Consensus       596 g~l~v~i~~a~~L~~~~~~~~~~~~dpyv~~~~g~~~~~T~~~~~-t~nP~wne~f~~~v~~~----~~~l~i~v~d~~~  670 (1005)
                      |.|+|+|++|+||+..+   ..+.+||||++.+++...+|+++.+ +.||.|||.|.|.+..+    ...|.|+|||++.
T Consensus         1 g~L~V~V~~A~~L~~~~---~~~~~dpyv~v~~~~~~~~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~   77 (124)
T cd04049           1 GTLEVLLISAKGLQDTD---FLGKIDPYVIIQCRTQERKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKDN   77 (124)
T ss_pred             CeEEEEEEecCCCCCCC---CCCCcCceEEEEECCEeeeeeEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEECcc
Confidence            78999999999999754   4678999999999999899999884 89999999999999876    5789999999987


Q ss_pred             cCCCCCCCCCcccEEEEEEcccccCCCEEeeeEeee
Q 045058          671 LGEKSNGNKDLKIGKVRIRISTLETGRIYTHSYPLL  706 (1005)
Q Consensus       671 ~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~  706 (1005)
                      ++      ++++||.+.|+|+++..+...+.||+|.
T Consensus        78 ~~------~d~~iG~~~i~l~~l~~~~~~~~~~~l~  107 (124)
T cd04049          78 FS------DDDFIGEATIHLKGLFEEGVEPGTAELV  107 (124)
T ss_pred             CC------CCCeEEEEEEEhHHhhhCCCCcCceEee
Confidence            65      7899999999999998877778999996

In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai

>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins

Probab=99.61  E-value=6.1e-15  Score=139.50  Aligned_cols=110  Identities=35%  Similarity=0.546  Sum_probs=90.8

Q ss_pred             ceeeeccccceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeeeeeecCCCCCeeeeEEEEeecC---CCC
Q 045058          259 TASTYDLVERMYFLYVRVVKARELPAMDLTGSIDPFVEVKIGN-----YKGITKHYEKNQNPQWHQVFAFSRDR---MQA  330 (1005)
Q Consensus       259 ~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~~-----~~~kT~~~~~~~nP~wne~f~f~~~~---~~~  330 (1005)
                      ++..|+  ...+.|.|+|++|++|+..+..+.+||||++++.+     ..++|++++++.||.|||+|.|.+..   +..
T Consensus         7 ~~l~~~--~~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~l~~   84 (125)
T cd04031           7 IQLWYD--KVTSQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQTFEYSNVRRETLKE   84 (125)
T ss_pred             EEEEEe--CCCCEEEEEEEEecCCCCcCCCCCCCCEEEEEEccCCCccccccccccCCCCCCccccEEEEcccCHHHhCC
Confidence            344444  34588999999999999999889999999999975     46789999999999999999998533   345


Q ss_pred             cEEEEEEEeCC-CCCCceeEEEEEEceecCCCCCCCCCCCCeEEEee
Q 045058          331 SVLEVVIKDKD-LVKDDFVGIVRFDINEVPLRVPPDSPLAPEWYRLE  376 (1005)
Q Consensus       331 ~~l~v~V~d~~-~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~  376 (1005)
                      ..|.|+|||++ .+++++||++.++|.+...      .....||+|+
T Consensus        85 ~~l~~~V~d~~~~~~~~~iG~~~i~l~~~~~------~~~~~W~~L~  125 (125)
T cd04031          85 RTLEVTVWDYDRDGENDFLGEVVIDLADALL------DDEPHWYPLQ  125 (125)
T ss_pred             CEEEEEEEeCCCCCCCcEeeEEEEecccccc------cCCcceEECc
Confidence            78999999999 6789999999999998332      2346899985

RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as

>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins

Probab=99.60  E-value=3.3e-15  Score=143.43  Aligned_cols=99  Identities=30%  Similarity=0.404  Sum_probs=85.0

Q ss_pred             CCcEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----------------------------eEeeccccCCCCCCcee
Q 045058            2 RNLKLGVQVVGAHNLLPKDGKGSSSAFVELYFDG-----------------------------QRFRTTIKENDLNPVWN   52 (1005)
Q Consensus         2 ~~~~l~V~v~~a~~L~~~d~~g~~dpyv~v~~~~-----------------------------~~~~T~v~~~t~nP~Wn   52 (1005)
                      +.+.|.|+|++|+||.++|..|.+||||+|.+..                             ..++|+++++++||+||
T Consensus        26 ~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~Wn  105 (153)
T cd08676          26 PIFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQTLNPVWN  105 (153)
T ss_pred             CeEEEEEEEEeccCCcccCCCCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceecCCCCCccc
Confidence            4578999999999999999999999999999853                             23789999999999999


Q ss_pred             eEEEEEeccCccccceEEEEEEEeCCCCCCCCcccEEEEEeCCcccCCCCceeeeEec
Q 045058           53 ESFYFNISDASKLHYLTLEAYIYNNIGDTNSRSFLGKVCLTGNSFVPLSDSVVLHYPL  110 (1005)
Q Consensus        53 e~f~f~v~~~~~~~~~~l~v~V~d~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L  110 (1005)
                      |+|.|.+...   ....|.|+|||++     +++||++.+++.++...+  .+.||+|
T Consensus       106 E~F~f~v~~~---~~~~L~i~V~D~d-----d~~IG~v~i~l~~l~~~~--~d~W~~L  153 (153)
T cd08676         106 ETFRFEVEDV---SNDQLHLDIWDHD-----DDFLGCVNIPLKDLPSCG--LDSWFKL  153 (153)
T ss_pred             cEEEEEeccC---CCCEEEEEEEecC-----CCeEEEEEEEHHHhCCCC--CCCeEeC
Confidence            9999998643   2368999999984     889999999999988433  4679987

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy

>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11

Probab=99.60  E-value=7.8e-15  Score=138.28  Aligned_cols=114  Identities=25%  Similarity=0.345  Sum_probs=91.3

Q ss_pred             cceeeeccccceeEEEEEEEEeecCCCCCCC-CCCCcEEEEEECC---eeeeeeeecCCCCCeeeeEEEEe-ec--CCCC
Q 045058          258 KTASTYDLVERMYFLYVRVVKARELPAMDLT-GSIDPFVEVKIGN---YKGITKHYEKNQNPQWHQVFAFS-RD--RMQA  330 (1005)
Q Consensus       258 ~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~-g~~dPyv~v~~~~---~~~kT~~~~~~~nP~wne~f~f~-~~--~~~~  330 (1005)
                      .++..|+.  ..+.|.|+|++|+||+..+.. +.+||||++++.+   ++.||++++++.||.|||+|.|. +.  +...
T Consensus         6 ~~~l~y~~--~~~~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~~~~~~kT~v~~~t~nP~wnE~F~f~~~~~~~~~~   83 (128)
T cd08388           6 FFSLRYNS--EKKALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKEHKVKTRVLRKTRNPVYDETFTFYGIPYNQLQD   83 (128)
T ss_pred             EEEEEEEC--CCCEEEEEEEEeECCCCCCCCCCCcCCEEEEEEeCCcCceeeccEEcCCCCCceeeEEEEcccCHHHhCC
Confidence            44555554  348999999999999998875 8999999999964   45689999999999999999994 32  3445


Q ss_pred             cEEEEEEEeCC-CCCCceeEEEEEEceecCCCCCCCCCCCCeEEEee
Q 045058          331 SVLEVVIKDKD-LVKDDFVGIVRFDINEVPLRVPPDSPLAPEWYRLE  376 (1005)
Q Consensus       331 ~~l~v~V~d~~-~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~  376 (1005)
                      ..|.|+|||++ ++++++||++.++|.++.....   .....|.+|.
T Consensus        84 ~~L~~~V~d~d~~~~d~~lG~~~i~L~~l~~~~~---~~~~~~~~~~  127 (128)
T cd08388          84 LSLHFAVLSFDRYSRDDVIGEVVCPLAGADLLNE---GELLVSREIQ  127 (128)
T ss_pred             CEEEEEEEEcCCCCCCceeEEEEEeccccCCCCC---ceEEEEEecc
Confidence            68999999998 7889999999999999976421   2356677664

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence

>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12

Probab=99.60  E-value=6.1e-15  Score=139.65  Aligned_cols=88  Identities=27%  Similarity=0.338  Sum_probs=77.6

Q ss_pred             EEEEEEEEeeeCCCCCCCCCCCcEEEEEEC---C--eEEeeecccCCCCCcccccEEEEEeeCC--CCCeEEEEEEeccC
Q 045058          435 YVRVNVVEAQDLVPTEKNHFPDVYVKAQIG---N--QVLKTKICQARTLSAVWNEDLLFVAAEP--FEDHLVLTVEDRVG  507 (1005)
Q Consensus       435 ~L~V~v~~a~~L~~~d~~~~~dpyv~v~lg---~--~~~kT~~~~~~t~~P~w~e~f~f~v~~~--~~~~l~i~V~d~d~  507 (1005)
                      .|.|+|++|+||+..+..+.+||||++++.   .  .+.||++++ ++.||.|||.|.|.+...  .+..|.|+|||+|.
T Consensus        16 ~L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~~~~~~~~k~kT~v~k-~t~nP~~nE~f~F~v~~~~l~~~~l~~~V~~~d~   94 (136)
T cd08406          16 RLTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRKISKKKTSVKR-DDTNPIFNEAMIFSVPAIVLQDLSLRVTVAESTE   94 (136)
T ss_pred             EEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCccccccCCcccc-CCCCCeeceeEEEECCHHHhCCcEEEEEEEeCCC
Confidence            799999999999999988999999999992   2  256788886 999999999999998654  56689999999999


Q ss_pred             CCCCceeEEEEEcccc
Q 045058          508 PGKDEIIGRVIIPLSA  523 (1005)
Q Consensus       508 ~~~d~~iG~~~i~l~~  523 (1005)
                      .+++++||++.|+...
T Consensus        95 ~~~~~~iG~v~lg~~~  110 (136)
T cd08406          95 DGKTPNVGHVIIGPAA  110 (136)
T ss_pred             CCCCCeeEEEEECCCC
Confidence            9999999999998764

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl

>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin

Probab=99.60  E-value=6.2e-15  Score=135.85  Aligned_cols=107  Identities=26%  Similarity=0.403  Sum_probs=92.9

Q ss_pred             CceEEEEEEEEEeeeCCCCCCCCCCCcEEEEEECCeEEeeecccCCCCCcccccEEEEEeeCCC----CCeEEEEEEecc
Q 045058          431 PRLWYVRVNVVEAQDLVPTEKNHFPDVYVKAQIGNQVLKTKICQARTLSAVWNEDLLFVAAEPF----EDHLVLTVEDRV  506 (1005)
Q Consensus       431 ~~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~lg~~~~kT~~~~~~t~~P~w~e~f~f~v~~~~----~~~l~i~V~d~d  506 (1005)
                      |+.+.|+|+|++|+||+    ++.+||||+++++++.++|++++ ++.||.|||.|.|.+..+.    ...|.|+|||++
T Consensus         1 ~~~~~l~V~v~~a~~L~----~~~~dpyv~v~~~~~~~kT~~~~-~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~~   75 (111)
T cd04011           1 PQDFQVRVRVIEARQLV----GGNIDPVVKVEVGGQKKYTSVKK-GTNCPFYNEYFFFNFHESPDELFDKIIKISVYDSR   75 (111)
T ss_pred             CCcEEEEEEEEEcccCC----CCCCCCEEEEEECCEeeeeeEEe-ccCCCccccEEEEecCCCHHHHhcCeEEEEEEcCc
Confidence            35678999999999998    57799999999999999999986 8999999999999986542    468999999999


Q ss_pred             CCCCCceeEEEEEcccccccccccccccceeEEccCC
Q 045058          507 GPGKDEIIGRVIIPLSAIEKRADERIIHSRWFNLEKP  543 (1005)
Q Consensus       507 ~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~w~~L~~~  543 (1005)
                      .++++++||++.++|+++.... ++.....|++|..+
T Consensus        76 ~~~~~~~iG~~~i~l~~v~~~~-~~~~~~~w~~L~~~  111 (111)
T cd04011          76 SLRSDTLIGSFKLDVGTVYDQP-DHAFLRKWLLLTDP  111 (111)
T ss_pred             ccccCCccEEEEECCccccCCC-CCcceEEEEEeeCc
Confidence            9888999999999999997653 44567899999753

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme

>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family

Probab=99.60  E-value=9.4e-15  Score=138.35  Aligned_cols=118  Identities=19%  Similarity=0.257  Sum_probs=96.7

Q ss_pred             cEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeE-eeccccCCCCCCceeeEEEEEeccCccccceEEEEEEEeCCCCC-
Q 045058            4 LKLGVQVVGAHNLLPKDGKGSSSAFVELYFDGQR-FRTTIKENDLNPVWNESFYFNISDASKLHYLTLEAYIYNNIGDT-   81 (1005)
Q Consensus         4 ~~l~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~-~~T~v~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~~~-   81 (1005)
                      ..|.|.|++|++|+.++     +|||+|.+++.+ .||+++.++.||.|||+|.|.....    ...|.|.||..++.. 
T Consensus        11 ~sL~v~V~EAk~Lp~~~-----~~Y~~i~Ld~~~vaRT~v~~~~~nP~W~E~F~f~~~~~----~~~l~v~v~k~~~~~~   81 (146)
T cd04013          11 NSLKLWIIEAKGLPPKK-----RYYCELCLDKTLYARTTSKLKTDTLFWGEHFEFSNLPP----VSVITVNLYRESDKKK   81 (146)
T ss_pred             EEEEEEEEEccCCCCcC-----CceEEEEECCEEEEEEEEEcCCCCCcceeeEEecCCCc----ccEEEEEEEEccCccc
Confidence            46899999999998865     799999999987 6999999999999999999985432    247999998764332 


Q ss_pred             --CCCcccEEEEEeCCcccCCCCceeeeEecccCCCcc--------eeeeEEEEEEEEec
Q 045058           82 --NSRSFLGKVCLTGNSFVPLSDSVVLHYPLEKRGIFS--------HVRGELGLKVYITD  131 (1005)
Q Consensus        82 --~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~~--------~~~G~i~l~~~~~~  131 (1005)
                        .++.+||.+.|++.++.. +...+.||+|.+..+.+        ...|.|++++.|.+
T Consensus        82 ~~~~~~~IG~V~Ip~~~l~~-~~~ve~Wfpl~~~~~~~~~~~~~~~~~~~~lrik~rf~~  140 (146)
T cd04013          82 KKDKSQLIGTVNIPVTDVSS-RQFVEKWYPVSTPKGNGKSGGKEGKGESPSIRIKARYQS  140 (146)
T ss_pred             cccCCcEEEEEEEEHHHhcC-CCcccEEEEeecCCCCCccccccccCCCCEEEEEEEEEE
Confidence              268999999999999885 44567899999876543        45589999999876

SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas

>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins

Probab=99.60  E-value=7.8e-15  Score=139.13  Aligned_cols=112  Identities=25%  Similarity=0.445  Sum_probs=94.1

Q ss_pred             cceeeeccccceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeeeeeecCCCCCeeeeEEEEeec--CCCC
Q 045058          258 KTASTYDLVERMYFLYVRVVKARELPAMDLTGSIDPFVEVKIGN-----YKGITKHYEKNQNPQWHQVFAFSRD--RMQA  330 (1005)
Q Consensus       258 ~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~~-----~~~kT~~~~~~~nP~wne~f~f~~~--~~~~  330 (1005)
                      .++..|+  ...+.|.|+|++|+||+..+..+.+||||++++.+     ..++|++++++.||.|||+|.|.+.  ++..
T Consensus         6 ~~~l~y~--~~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~~~nP~wne~f~f~i~~~~l~~   83 (127)
T cd04030           6 QLTIRYS--SQRQKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFDETFEFPVSLEELKR   83 (127)
T ss_pred             EEEEEEe--CCCCEEEEEEEEEECCCCccCCCCCCceEEEEEEcCCCCCceEecccccCCCCCEECeEEEEecCHHHhcC
Confidence            3445554  44589999999999999999889999999999963     5679999999999999999999974  3445


Q ss_pred             cEEEEEEEeCC-C--CCCceeEEEEEEceecCCCCCCCCCCCCeEEEee
Q 045058          331 SVLEVVIKDKD-L--VKDDFVGIVRFDINEVPLRVPPDSPLAPEWYRLE  376 (1005)
Q Consensus       331 ~~l~v~V~d~~-~--~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~  376 (1005)
                      ..|.|.|||++ .  +++++||++.++|.++..+     .....||+|.
T Consensus        84 ~~l~i~v~~~~~~~~~~~~~iG~~~i~l~~l~~~-----~~~~~W~~L~  127 (127)
T cd04030          84 RTLDVAVKNSKSFLSREKKLLGQVLIDLSDLDLS-----KGFTQWYDLT  127 (127)
T ss_pred             CEEEEEEEECCcccCCCCceEEEEEEeccccccc-----CCccceEECc
Confidence            78999999998 4  5899999999999998654     3568899874

KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1

>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13

Probab=99.60  E-value=2.3e-15  Score=142.22  Aligned_cols=107  Identities=20%  Similarity=0.272  Sum_probs=87.1

Q ss_pred             CcceEEEEEEEEecCCCCCCCCCCCCCCCcEEEEEECC--E---EEEeeeccCCCCceeccEEEEEEeC---CCceEEEE
Q 045058          593 PSIGILELGILNAVGLHPMKTRDGRGTSDTYCVAKYGH--K---WVRTRTLVDNLSPKYNEQYTWEVFD---PATVLTVG  664 (1005)
Q Consensus       593 ~~~g~l~v~i~~a~~L~~~~~~~~~~~~dpyv~~~~g~--~---~~~T~~~~~t~nP~wne~f~~~v~~---~~~~l~i~  664 (1005)
                      +..|.|.|.|++|+||.+++.. ..+.+||||++.+.+  +   +.||+++++++||+|||.|.|.+..   ....|.|+
T Consensus        12 ~~~~~L~V~V~karnL~~~d~~-~~~~~DpYVKv~l~~~~~k~~kkkT~v~k~t~nPvfNE~f~F~v~~~~L~~~~L~~~   90 (138)
T cd08407          12 PAANRLLVVVIKAKNLHSDQLK-LLLGIDVSVKVTLKHQNAKLKKKQTKRAKHKINPVWNEMIMFELPSELLAASSVELE   90 (138)
T ss_pred             CCCCeEEEEEEEecCCCccccC-CCCCCCeEEEEEEEcCCcccceeccceeeCCCCCccccEEEEECCHHHhCccEEEEE
Confidence            4568999999999999987631 234489999999843  2   4689999999999999999999975   25689999


Q ss_pred             EEeCCCcCCCCCCCCCcccEEEEEEcccccCCCEEeeeEeeeec
Q 045058          665 VFDNSQLGEKSNGNKDLKIGKVRIRISTLETGRIYTHSYPLLVL  708 (1005)
Q Consensus       665 v~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~  708 (1005)
                      |||+|.++      ++++||.+.+++..  .|....+|..+...
T Consensus        91 V~d~d~~~------~~d~iG~v~lg~~~--~g~~~~hW~~ml~~  126 (138)
T cd08407          91 VLNQDSPG------QSLPLGRCSLGLHT--SGTERQHWEEMLDN  126 (138)
T ss_pred             EEeCCCCc------CcceeceEEecCcC--CCcHHHHHHHHHhC
Confidence            99999876      89999999999975  44455788877643

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy

>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase

Probab=99.60  E-value=1.1e-14  Score=137.02  Aligned_cols=117  Identities=25%  Similarity=0.329  Sum_probs=95.5

Q ss_pred             cEEEEEEEEeecCCCCCCCCCCCcEEEEEECCe-EeeccccCCCCCCceeeEEEEEeccCccccceEEEEEEEeCCCCCC
Q 045058            4 LKLGVQVVGAHNLLPKDGKGSSSAFVELYFDGQ-RFRTTIKENDLNPVWNESFYFNISDASKLHYLTLEAYIYNNIGDTN   82 (1005)
Q Consensus         4 ~~l~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~-~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~~~~   82 (1005)
                      -.|.|+|++|+ |...+..+.+||||+|+++++ .++|+++++++||+|||+|.|.+...     ..|.|+|||++. .+
T Consensus         2 ~~L~V~i~~a~-l~~~~~~~~~dPyv~v~~~~~~~~kT~v~~~t~~P~Wne~f~~~~~~~-----~~l~~~V~d~~~-~~   74 (125)
T cd04021           2 SQLQITVESAK-LKSNSKSFKPDPYVEVTVDGQPPKKTEVSKKTSNPKWNEHFTVLVTPQ-----STLEFKVWSHHT-LK   74 (125)
T ss_pred             ceEEEEEEeeE-CCCCCcCCCCCeEEEEEECCcccEEeeeeCCCCCCccccEEEEEeCCC-----CEEEEEEEeCCC-CC
Confidence            46899999999 655666788999999999988 89999999999999999999998532     489999999954 56


Q ss_pred             CCcccEEEEEeCCcccCCCC--c--eeeeEecccCCC-cceeeeEEEEEE
Q 045058           83 SRSFLGKVCLTGNSFVPLSD--S--VVLHYPLEKRGI-FSHVRGELGLKV  127 (1005)
Q Consensus        83 ~d~~lG~~~i~l~~l~~~~~--~--~~~w~~L~~~~~-~~~~~G~i~l~~  127 (1005)
                      .|++||++.++|.++.....  .  ...|++|...+. .+...|++.+.+
T Consensus        75 ~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~  124 (125)
T cd04021          75 ADVLLGEASLDLSDILKNHNGKLENVKLTLNLSSENKGSSVKVGELTVIL  124 (125)
T ss_pred             CCcEEEEEEEEHHHhHhhcCCCccceEEEEEEEccCCCcceeeeeEEEEe
Confidence            89999999999999864321  1  224899986653 457789998875

E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e

>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4

Probab=99.60  E-value=1.3e-14  Score=142.26  Aligned_cols=131  Identities=22%  Similarity=0.318  Sum_probs=104.9

Q ss_pred             ceEEEEEEEEeccCCcccccccCCCCCCCCCCCCccccccccccccCCceEEEEEEEEEeeeCCCCCCCCCCCcEEEEEE
Q 045058          384 KGELMLAVWIGTQADEAFSDAWHSDAATPVDSTPAITAVIRSKVYHSPRLWYVRVNVVEAQDLVPTEKNHFPDVYVKAQI  463 (1005)
Q Consensus       384 ~G~i~l~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~l  463 (1005)
                      +|+|.+++.|.++..+....                        ...+..+.|.|+|++|+||+..+..+.+||||++.+
T Consensus         1 ~G~l~~~l~y~~~~~~~~~~------------------------~~~~~~g~L~V~Vi~A~nL~~~d~~g~~DPYVkv~l   56 (162)
T cd04020           1 RGELKVALKYVPPESEGALK------------------------SKKPSTGELHVWVKEAKNLPALKSGGTSDSFVKCYL   56 (162)
T ss_pred             CceEEEEEEecCcccccccc------------------------ccCCCCceEEEEEEeeeCCCCCCCCCCCCCEEEEEE
Confidence            49999999998765321110                        022345689999999999999998899999999998


Q ss_pred             -----CCeEEeeecccCCCCCcccccEEEEEeeCC---CCCeEEEEEEeccCCCCCceeEEEEEcccccccccccccccc
Q 045058          464 -----GNQVLKTKICQARTLSAVWNEDLLFVAAEP---FEDHLVLTVEDRVGPGKDEIIGRVIIPLSAIEKRADERIIHS  535 (1005)
Q Consensus       464 -----g~~~~kT~~~~~~t~~P~w~e~f~f~v~~~---~~~~l~i~V~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~~~~  535 (1005)
                           +...++|++++ ++.||.|||.|.|.+...   .+..|.|+|||++.++++++||++.+++.++....    ...
T Consensus        57 ~~~~~~~~~~kT~vi~-~t~nP~WnE~f~f~~~~~~~l~~~~L~i~V~d~d~~~~d~~lG~v~i~l~~~~~~~----~~~  131 (162)
T cd04020          57 LPDKSKKSKQKTPVVK-KSVNPVWNHTFVYDGVSPEDLSQACLELTVWDHDKLSSNDFLGGVRLGLGTGKSYG----QAV  131 (162)
T ss_pred             EcCCCCCcceeCCccC-CCCCCCCCCEEEEecCCHHHhCCCEEEEEEEeCCCCCCCceEEEEEEeCCccccCC----Ccc
Confidence                 34678999996 899999999999985322   34579999999999989999999999999987543    357


Q ss_pred             eeEEccCC
Q 045058          536 RWFNLEKP  543 (1005)
Q Consensus       536 ~w~~L~~~  543 (1005)
                      .|+.+.+.
T Consensus       132 ~w~~~~~~  139 (162)
T cd04020         132 DWMDSTGE  139 (162)
T ss_pred             ccccCChH
Confidence            88887654

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin

>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12

Probab=99.60  E-value=5.6e-15  Score=139.89  Aligned_cols=105  Identities=24%  Similarity=0.378  Sum_probs=86.0

Q ss_pred             CcEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eEeeccccCCCCCCceeeEEEEEeccCccccceEEEEEEEeC
Q 045058            3 NLKLGVQVVGAHNLLPKDGKGSSSAFVELYFDG-----QRFRTTIKENDLNPVWNESFYFNISDASKLHYLTLEAYIYNN   77 (1005)
Q Consensus         3 ~~~l~V~v~~a~~L~~~d~~g~~dpyv~v~~~~-----~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~   77 (1005)
                      ..+|.|+|++|+||..++..|.+||||+|++..     .+.||+++++++||+|||+|.|.+... .+....|.|.|||+
T Consensus        14 ~~~L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~~~~~~~~k~kT~v~k~t~nP~~nE~f~F~v~~~-~l~~~~l~~~V~~~   92 (136)
T cd08406          14 AERLTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRKISKKKTSVKRDDTNPIFNEAMIFSVPAI-VLQDLSLRVTVAES   92 (136)
T ss_pred             CCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCccccccCCccccCCCCCeeceeEEEECCHH-HhCCcEEEEEEEeC
Confidence            468999999999999999899999999999832     267899999999999999999998654 36678999999999


Q ss_pred             CCCCCCCcccEEEEEeCCcccCCCCceeeeEeccc
Q 045058           78 IGDTNSRSFLGKVCLTGNSFVPLSDSVVLHYPLEK  112 (1005)
Q Consensus        78 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~  112 (1005)
                      +. .+++++||++.|+...   .+.....|..+..
T Consensus        93 d~-~~~~~~iG~v~lg~~~---~g~~~~hW~~ml~  123 (136)
T cd08406          93 TE-DGKTPNVGHVIIGPAA---SGMGLSHWNQMLA  123 (136)
T ss_pred             CC-CCCCCeeEEEEECCCC---CChhHHHHHHHHH
Confidence            64 5689999999998653   2333456866543

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl

>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1)

Probab=99.60  E-value=1.8e-14  Score=137.96  Aligned_cols=118  Identities=24%  Similarity=0.339  Sum_probs=92.0

Q ss_pred             EEEEEEEecC--CCCCCCCCCCCCCCcEEEEEE-----CCEEEEeeeccCCCCceeccEEEEEEeCC---------CceE
Q 045058          598 LELGILNAVG--LHPMKTRDGRGTSDTYCVAKY-----GHKWVRTRTLVDNLSPKYNEQYTWEVFDP---------ATVL  661 (1005)
Q Consensus       598 l~v~i~~a~~--L~~~~~~~~~~~~dpyv~~~~-----g~~~~~T~~~~~t~nP~wne~f~~~v~~~---------~~~l  661 (1005)
                      ..++|..|+|  |+.   .+..+.+||||++.+     +.+.+||+++++|+||+|||+|.|.|...         ...|
T Consensus         4 ~el~i~~~~~~~l~~---~~~~~~~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L   80 (155)
T cd08690           4 IELTIVRCIGIPLPS---GWNPKDLDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHGL   80 (155)
T ss_pred             eEEEEEEeeccccCC---CcCCCCCCeEEEEEEecCCCCCceeecCcccCCCCCcccceEEEEeccccchhhhhccCCcE
Confidence            3555666666  554   345778999999987     34578999999999999999999999644         3479


Q ss_pred             EEEEEeCCCcCCCCCCCCCcccEEEEEEcccccCCCEEeeeEeeeecCCCCCceeeEEEEEEEEe
Q 045058          662 TVGVFDNSQLGEKSNGNKDLKIGKVRIRISTLETGRIYTHSYPLLVLHPTGVKKMGELHLAIRFS  726 (1005)
Q Consensus       662 ~i~v~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~G~i~l~~~~~  726 (1005)
                      .|+|||++.+.     .+|++||++.|+|+.+..+.....|++|....   ....|.|+++++..
T Consensus        81 ~~~V~d~~~f~-----~~D~~iG~~~i~L~~l~~~~~~~~~~~L~~~~---k~~Gg~l~v~ir~r  137 (155)
T cd08690          81 KFEVYHKGGFL-----RSDKLLGTAQVKLEPLETKCEIHESVDLMDGR---KATGGKLEVKVRLR  137 (155)
T ss_pred             EEEEEeCCCcc-----cCCCeeEEEEEEcccccccCcceEEEEhhhCC---CCcCCEEEEEEEec
Confidence            99999998653     27999999999999998876667899986211   12258999999863

Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha

>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16

Probab=99.60  E-value=9.3e-15  Score=137.07  Aligned_cols=111  Identities=23%  Similarity=0.345  Sum_probs=93.0

Q ss_pred             cceeeeccccceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC---eeeeeeeecCCCCCeeeeEEEEe-ec--CCCCc
Q 045058          258 KTASTYDLVERMYFLYVRVVKARELPAMDLTGSIDPFVEVKIGN---YKGITKHYEKNQNPQWHQVFAFS-RD--RMQAS  331 (1005)
Q Consensus       258 ~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~~---~~~kT~~~~~~~nP~wne~f~f~-~~--~~~~~  331 (1005)
                      .++..|+..  ...|.|+|++|+||+..+.+|.+||||++.+.+   ++.||+++++ .||+|||+|.|. +.  ++...
T Consensus         6 ~~sl~Y~~~--~~~L~V~Vi~a~nL~~~~~~~~~d~yVk~~llp~~~~~~kTkv~~~-~nP~fnE~F~f~~i~~~~l~~~   82 (124)
T cd08389           6 DVAFEYDPS--ARKLTVTVIRAQDIPTKDRGGASSWQVHLVLLPSKKQRAKTKVQRG-PNPVFNETFTFSRVEPEELNNM   82 (124)
T ss_pred             EEEEEECCC--CCEEEEEEEEecCCCchhcCCCCCcEEEEEEccCCcceeecccccC-CCCcccCEEEECCCCHHHhccC
Confidence            445556543  488999999999999999889999999988754   4578998877 999999999998 53  44567


Q ss_pred             EEEEEEEeCC-CCCCceeEEEEEEceecCCCCCCCCCCCCeEEEee
Q 045058          332 VLEVVIKDKD-LVKDDFVGIVRFDINEVPLRVPPDSPLAPEWYRLE  376 (1005)
Q Consensus       332 ~l~v~V~d~~-~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~  376 (1005)
                      .|.|+|||++ ++++++||++.++|.++..+     .....|++|.
T Consensus        83 ~L~~~V~~~~~~~~~~~lG~~~i~L~~l~~~-----~~~~~w~~L~  123 (124)
T cd08389          83 ALRFRLYGVERMRKERLIGEKVVPLSQLNLE-----GETTVWLTLE  123 (124)
T ss_pred             EEEEEEEECCCcccCceEEEEEEeccccCCC-----CCceEEEeCC
Confidence            8999999999 78899999999999999664     4578899986

Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle

>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13

Probab=99.60  E-value=1.2e-14  Score=137.38  Aligned_cols=88  Identities=25%  Similarity=0.346  Sum_probs=76.2

Q ss_pred             EEEEEEEEeeeCCCCCC--CCCCCcEEEEEECC-----eEEeeecccCCCCCcccccEEEEEeeCC--CCCeEEEEEEec
Q 045058          435 YVRVNVVEAQDLVPTEK--NHFPDVYVKAQIGN-----QVLKTKICQARTLSAVWNEDLLFVAAEP--FEDHLVLTVEDR  505 (1005)
Q Consensus       435 ~L~V~v~~a~~L~~~d~--~~~~dpyv~v~lg~-----~~~kT~~~~~~t~~P~w~e~f~f~v~~~--~~~~l~i~V~d~  505 (1005)
                      .|.|.|++|+||+.++.  .+.+||||++++..     .+.||++.+ ++.||+|||.|.|.+...  .+..|.|+|||+
T Consensus        16 ~L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~~~k~~kkkT~v~k-~t~nPvfNE~f~F~v~~~~L~~~~L~~~V~d~   94 (138)
T cd08407          16 RLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQNAKLKKKQTKRAK-HKINPVWNEMIMFELPSELLAASSVELEVLNQ   94 (138)
T ss_pred             eEEEEEEEecCCCccccCCCCCCCeEEEEEEEcCCcccceeccceee-CCCCCccccEEEEECCHHHhCccEEEEEEEeC
Confidence            79999999999999883  34589999999943     256888886 999999999999998654  356899999999


Q ss_pred             cCCCCCceeEEEEEcccc
Q 045058          506 VGPGKDEIIGRVIIPLSA  523 (1005)
Q Consensus       506 d~~~~d~~iG~~~i~l~~  523 (1005)
                      |.++++++||++.+++..
T Consensus        95 d~~~~~d~iG~v~lg~~~  112 (138)
T cd08407          95 DSPGQSLPLGRCSLGLHT  112 (138)
T ss_pred             CCCcCcceeceEEecCcC
Confidence            999999999999999965

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy

>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins

Probab=99.60  E-value=6.4e-15  Score=139.18  Aligned_cols=117  Identities=23%  Similarity=0.356  Sum_probs=99.4

Q ss_pred             EEEEEEEeecCCCCCCCCCCCcEEEEEECC-eeeeeeeec-CCCCCeeeeEEEEeecCCC----CcEEEEEEEeCC-CCC
Q 045058          272 LYVRVVKARELPAMDLTGSIDPFVEVKIGN-YKGITKHYE-KNQNPQWHQVFAFSRDRMQ----ASVLEVVIKDKD-LVK  344 (1005)
Q Consensus       272 L~V~v~~a~~L~~~~~~g~~dPyv~v~~~~-~~~kT~~~~-~~~nP~wne~f~f~~~~~~----~~~l~v~V~d~~-~~~  344 (1005)
                      |.|+|++|++|+..+..+.+||||++++++ +..+|+++. ++.||.|||.|.|.+.+..    ...|.|+|||++ +++
T Consensus         2 L~V~V~sA~~L~~~~~~~~~dpYv~v~~~~~~~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~~~~~   81 (125)
T cd04051           2 LEITIISAEDLKNVNLFGKMKVYAVVWIDPSHKQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCERPSLG   81 (125)
T ss_pred             EEEEEEEcccCCCCCcccCCceEEEEEECCCcccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEECCCCCC
Confidence            789999999999998889999999999998 788999875 4899999999999987663    578999999998 688


Q ss_pred             CceeEEEEEEceecCCCCCCCCCCCCeEEEeecCCCCccceEEEE
Q 045058          345 DDFVGIVRFDINEVPLRVPPDSPLAPEWYRLEDKKGEKIKGELML  389 (1005)
Q Consensus       345 d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~G~i~l  389 (1005)
                      +++||++.+++.++..+...+......||+|....+ +..|.|.+
T Consensus        82 ~~~lG~~~i~l~~l~~~~~~~~~~~~~~~~l~~~~g-~~~G~~~~  125 (125)
T cd04051          82 DKLIGEVRVPLKDLLDGASPAGELRFLSYQLRRPSG-KPQGVLNF  125 (125)
T ss_pred             CCcEEEEEEEHHHhhcccCCCCcceeEEEEeECCCC-CcCeEEeC
Confidence            999999999999998765433335678999998664 36788764

SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such

>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP)

Probab=99.60  E-value=1.6e-14  Score=138.11  Aligned_cols=90  Identities=26%  Similarity=0.403  Sum_probs=81.3

Q ss_pred             cEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEeeccccCCCCCCceeeEEEEEeccCccccceEEEEEEEeCCCCCCC
Q 045058            4 LKLGVQVVGAHNLLPKDGKGSSSAFVELYFDGQRFRTTIKENDLNPVWNESFYFNISDASKLHYLTLEAYIYNNIGDTNS   83 (1005)
Q Consensus         4 ~~l~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~~~~~   83 (1005)
                      |.|+|+|++|+||..++. +.+||||+|++++++++|+++++++||+|||+|.|.+.++.    ..|.|+|||++. +++
T Consensus         2 G~L~V~Vi~a~nL~~~d~-~~sDPYV~v~~g~~~~kT~vvk~t~nP~WnE~f~f~i~~~~----~~l~~~V~D~d~-~~~   75 (145)
T cd04038           2 GLLKVRVVRGTNLAVRDF-TSSDPYVVLTLGNQKVKTRVIKKNLNPVWNEELTLSVPNPM----APLKLEVFDKDT-FSK   75 (145)
T ss_pred             eEEEEEEEeeECCCCCCC-CCcCcEEEEEECCEEEEeeeEcCCCCCeecccEEEEecCCC----CEEEEEEEECCC-CCC
Confidence            689999999999998887 88999999999999999999999999999999999997653    589999999954 568


Q ss_pred             CcccEEEEEeCCcccC
Q 045058           84 RSFLGKVCLTGNSFVP   99 (1005)
Q Consensus        84 d~~lG~~~i~l~~l~~   99 (1005)
                      |++||++.+++.++..
T Consensus        76 dd~iG~a~i~l~~l~~   91 (145)
T cd04038          76 DDSMGEAEIDLEPLVE   91 (145)
T ss_pred             CCEEEEEEEEHHHhhh
Confidence            9999999999988643

ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i

>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs)

Probab=99.59  E-value=5.5e-15  Score=140.91  Aligned_cols=106  Identities=24%  Similarity=0.412  Sum_probs=90.7

Q ss_pred             EEEEEEEeecCCCCCCCCCCCcEEEEEEC----CeEeeccccCCCCCCceeeEEEEEeccC------------ccccceE
Q 045058            6 LGVQVVGAHNLLPKDGKGSSSAFVELYFD----GQRFRTTIKENDLNPVWNESFYFNISDA------------SKLHYLT   69 (1005)
Q Consensus         6 l~V~v~~a~~L~~~d~~g~~dpyv~v~~~----~~~~~T~v~~~t~nP~Wne~f~f~v~~~------------~~~~~~~   69 (1005)
                      |+|+|++|++|..+ ..|.+||||+|+++    +.+++|++++++.||.|||+|.|.+...            +.+....
T Consensus         1 L~V~Vi~A~~L~~~-~~g~~dPyv~v~~~~~~~~~~~rT~vv~~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~~   79 (137)
T cd08675           1 LSVRVLECRDLALK-SNGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKSE   79 (137)
T ss_pred             CEEEEEEccCCCcc-cCCCCCcEEEEEEecCCcCCeeccceeeCCCCCCcceEEEEEccccccccccccccccccccccE
Confidence            67999999999988 78899999999998    6789999999999999999999998664            1234578


Q ss_pred             EEEEEEeCCCCCCCCcccEEEEEeCCcccCCCCceeeeEecccCC
Q 045058           70 LEAYIYNNIGDTNSRSFLGKVCLTGNSFVPLSDSVVLHYPLEKRG  114 (1005)
Q Consensus        70 l~v~V~d~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~  114 (1005)
                      |.|+|||.+. .++++|||++.+++.++...+.. ..||+|.+++
T Consensus        80 l~i~V~d~~~-~~~~~~IG~~~i~l~~l~~~~~~-~~W~~L~~~~  122 (137)
T cd08675          80 LRVELWHASM-VSGDDFLGEVRIPLQGLQQAGSH-QAWYFLQPRE  122 (137)
T ss_pred             EEEEEEcCCc-CcCCcEEEEEEEehhhccCCCcc-cceEecCCcC
Confidence            9999999854 46899999999999998755443 5799999874

RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin

>PLN03008 Phospholipase D delta

Probab=99.59  E-value=6e-15  Score=171.02  Aligned_cols=126  Identities=25%  Similarity=0.361  Sum_probs=107.7

Q ss_pred             ceEEEEEEEEecCCCCCCC-------------C-----------------CC---------CCCCCcEEEEEECCE-EEE
Q 045058          595 IGILELGILNAVGLHPMKT-------------R-----------------DG---------RGTSDTYCVAKYGHK-WVR  634 (1005)
Q Consensus       595 ~g~l~v~i~~a~~L~~~~~-------------~-----------------~~---------~~~~dpyv~~~~g~~-~~~  634 (1005)
                      -|.|.++|++|++|+.||-             .                 .+         .++|||||+|.++++ ..|
T Consensus        13 hg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tSDPYV~I~Lg~~rv~R   92 (868)
T PLN03008         13 HGDLDLKIVKARRLPNMDMFSEHLRRLFTACNACARPTDTDDVDPRDKGEFGDKNIRSHRKVITSDPYVTVVVPQATLAR   92 (868)
T ss_pred             ecccEEEEEEcccCCchhHHHHHHHhhcccccccccccccccccccccccccccccccccccCCCCceEEEEECCcceee
Confidence            3889999999999886431             0                 01         357899999999876 469


Q ss_pred             eeeccCCCCceeccEEEEEEeCCCceEEEEEEeCCCcCCCCCCCCCcccEEEEEEcccccCCCEEeeeEeeeecCCCCCc
Q 045058          635 TRTLVDNLSPKYNEQYTWEVFDPATVLTVGVFDNSQLGEKSNGNKDLKIGKVRIRISTLETGRIYTHSYPLLVLHPTGVK  714 (1005)
Q Consensus       635 T~~~~~t~nP~wne~f~~~v~~~~~~l~i~v~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~  714 (1005)
                      |+++.+++||+|||+|.|.+.++...|+|+|+|+|.++       +++||.+.|||.+|..|...+.|++|.....+..+
T Consensus        93 TrVi~n~~NPvWNE~F~f~vah~~s~L~f~VkD~D~~g-------aD~IG~a~IPL~~L~~Ge~vd~Wl~Ll~~~~kp~k  165 (868)
T PLN03008         93 TRVLKNSQEPLWDEKFNISIAHPFAYLEFQVKDDDVFG-------AQIIGTAKIPVRDIASGERISGWFPVLGASGKPPK  165 (868)
T ss_pred             EEeCCCCCCCCcceeEEEEecCCCceEEEEEEcCCccC-------CceeEEEEEEHHHcCCCCceEEEEEccccCCCCCC
Confidence            99999999999999999999998889999999999875       58999999999999999999999999876655555


Q ss_pred             eeeEEEEEEEEee
Q 045058          715 KMGELHLAIRFSC  727 (1005)
Q Consensus       715 ~~G~i~l~~~~~~  727 (1005)
                      ..|+|+++++|.+
T Consensus       166 ~~~kl~v~lqf~p  178 (868)
T PLN03008        166 AETAIFIDMKFTP  178 (868)
T ss_pred             CCcEEEEEEEEEE
Confidence            5689999999976

>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins

Probab=99.59  E-value=9.5e-15  Score=135.99  Aligned_cols=102  Identities=29%  Similarity=0.389  Sum_probs=90.3

Q ss_pred             eEEEEEEEEecCCCCCCCCCCCCCCCcEEEEEECC-EEEEeeeccCCCCceeccEEEEEEeCCCceEEEEEEeCCCcCCC
Q 045058          596 GILELGILNAVGLHPMKTRDGRGTSDTYCVAKYGH-KWVRTRTLVDNLSPKYNEQYTWEVFDPATVLTVGVFDNSQLGEK  674 (1005)
Q Consensus       596 g~l~v~i~~a~~L~~~~~~~~~~~~dpyv~~~~g~-~~~~T~~~~~t~nP~wne~f~~~v~~~~~~l~i~v~d~~~~~~~  674 (1005)
                      |.|+|+|++|+||+..+   ..+.+||||++.+++ ...+|+++.++.||+|||.|.|++..+...|.|+|||++..+  
T Consensus         1 g~L~V~Vi~a~~L~~~d---~~g~~DPYv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~~~~~~L~v~v~d~~~~~--   75 (120)
T cd04045           1 GVLRLHIRKANDLKNLE---GVGKIDPYVRVLVNGIVKGRTVTISNTLNPVWDEVLYVPVTSPNQKITLEVMDYEKVG--   75 (120)
T ss_pred             CeEEEEEEeeECCCCcc---CCCCcCCEEEEEECCEEeeceeEECCCcCCccCceEEEEecCCCCEEEEEEEECCCCC--
Confidence            78999999999999754   468899999999977 468999999999999999999999888789999999999766  


Q ss_pred             CCCCCCcccEEEEEEcccccCCCEEeeeEeeee
Q 045058          675 SNGNKDLKIGKVRIRISTLETGRIYTHSYPLLV  707 (1005)
Q Consensus       675 ~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~  707 (1005)
                          +|++||.+.++|+++..+. .+.||-|..
T Consensus        76 ----~d~~IG~~~~~l~~l~~~~-~~~~~~~~~  103 (120)
T cd04045          76 ----KDRSLGSVEINVSDLIKKN-EDGKYVEYD  103 (120)
T ss_pred             ----CCCeeeEEEEeHHHhhCCC-CCceEEecC
Confidence                8899999999999998774 478888873

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group

Probab=99.59  E-value=2.9e-14  Score=135.00  Aligned_cols=117  Identities=22%  Similarity=0.371  Sum_probs=98.1

Q ss_pred             EEEEEEEEeecCCCCCCCCCCCcEEEEEECCe---eeeeeeecCCCCCeeeeEEEEeecCCCCcEEEEEEEeCC-CCCCc
Q 045058          271 FLYVRVVKARELPAMDLTGSIDPFVEVKIGNY---KGITKHYEKNQNPQWHQVFAFSRDRMQASVLEVVIKDKD-LVKDD  346 (1005)
Q Consensus       271 ~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~~~---~~kT~~~~~~~nP~wne~f~f~~~~~~~~~l~v~V~d~~-~~~d~  346 (1005)
                      .|.|+|++|++|+..+..+.+||||++.+.+.   .++|++++++.||.|||+|.|.+.......|.|+|||++ .++++
T Consensus         2 ~~~V~v~~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~~~~~t~~P~Wne~f~f~i~~~~~~~L~i~v~d~d~~~~~~   81 (126)
T cd04043           2 LFTIRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEEFELEVPAGEPLWISATVWDRSFVGKHD   81 (126)
T ss_pred             EEEEEEEEeECCCCCCCCCCCCceEEEEECCCCeeeecccEecCCCCCcccceEEEEcCCCCCCEEEEEEEECCCCCCCc
Confidence            57899999999999998999999999998753   579999999999999999999987755678999999999 66899


Q ss_pred             eeEEEEEEceecCCCCCCCCCCCCeEEEeecCCCCccceEEEEEEEEec
Q 045058          347 FVGIVRFDINEVPLRVPPDSPLAPEWYRLEDKKGEKIKGELMLAVWIGT  395 (1005)
Q Consensus       347 ~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~G~i~l~~~~~~  395 (1005)
                      +||++.++|.++....  +......|++|..      .|+|.+.+.+..
T Consensus        82 ~iG~~~i~l~~~~~~~--~~~~~~~w~~l~~------~g~i~l~~~~~~  122 (126)
T cd04043          82 LCGRASLKLDPKRFGD--DGLPREIWLDLDT------QGRLLLRVSMEG  122 (126)
T ss_pred             eEEEEEEecCHHHcCC--CCCCceEEEEcCC------CCeEEEEEEEee
Confidence            9999999998765431  1234678999974      288988887754

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap

>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7

Probab=99.58  E-value=1.6e-14  Score=136.62  Aligned_cols=112  Identities=34%  Similarity=0.527  Sum_probs=93.5

Q ss_pred             cceeeeccccceeEEEEEEEEeecCCCCCCCCCCCcEEEEEEC---CeeeeeeeecCCCCCeeeeEEEEeec---CCCCc
Q 045058          258 KTASTYDLVERMYFLYVRVVKARELPAMDLTGSIDPFVEVKIG---NYKGITKHYEKNQNPQWHQVFAFSRD---RMQAS  331 (1005)
Q Consensus       258 ~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~---~~~~kT~~~~~~~nP~wne~f~f~~~---~~~~~  331 (1005)
                      .++..|+  ...+.|.|+|++|+||+..+..+.+||||++++.   ....+|++++++.||.|||+|.|...   .+...
T Consensus         6 ~~~l~y~--~~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~~P~Wne~f~f~~~~~~~l~~~   83 (125)
T cd08386           6 QFSVSYD--FQESTLTLKILKAVELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKLQQR   83 (125)
T ss_pred             EEEEEEC--CCCCEEEEEEEEecCCCCccCCCCCCceEEEEECCCCCcceeeeeecCCCCCccceeEEEcccCHHHhCCC
Confidence            3445554  3458899999999999999988999999999994   35679999999999999999999742   33456


Q ss_pred             EEEEEEEeCC-CCCCceeEEEEEEceecCCCCCCCCCCCCeEEEee
Q 045058          332 VLEVVIKDKD-LVKDDFVGIVRFDINEVPLRVPPDSPLAPEWYRLE  376 (1005)
Q Consensus       332 ~l~v~V~d~~-~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~  376 (1005)
                      .|.|+|||++ .+++++||++.+++.++...     .....|+.|.
T Consensus        84 ~l~~~v~d~d~~~~~~~iG~~~i~l~~l~~~-----~~~~~W~~l~  124 (125)
T cd08386          84 VLYLQVLDYDRFSRNDPIGEVSLPLNKVDLT-----EEQTFWKDLK  124 (125)
T ss_pred             EEEEEEEeCCCCcCCcEeeEEEEecccccCC-----CCcceEEecC
Confidence            8999999999 77899999999999999864     3578899885

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves

>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus)

Probab=99.58  E-value=2.3e-14  Score=132.93  Aligned_cols=92  Identities=17%  Similarity=0.325  Sum_probs=76.8

Q ss_pred             ceEEEEEEEEEeeeCCCCCCCCCCCcEEEEEE---CC--eEEeeecccCCCC-CcccccEEEEEeeCC-CCCeEEEEEEe
Q 045058          432 RLWYVRVNVVEAQDLVPTEKNHFPDVYVKAQI---GN--QVLKTKICQARTL-SAVWNEDLLFVAAEP-FEDHLVLTVED  504 (1005)
Q Consensus       432 ~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~l---g~--~~~kT~~~~~~t~-~P~w~e~f~f~v~~~-~~~~l~i~V~d  504 (1005)
                      ..++|+|.|++|+||+.+...+.+||||+|.+   +.  .+.||++++ +|. +|.|||.|.|.+..+ .+-.|.|+|||
T Consensus        12 ~~~rLtV~VikarnL~~~~~~~~~dpYVKV~L~~~~k~~~KkKT~v~k-~t~~~P~fNEsF~Fdv~~~~~~v~l~v~v~d   90 (135)
T cd08692          12 VNSRIQLQILEAQNLPSSSTPLTLSFFVKVGMFSTGGLLYKKKTRLVK-SSNGQVKWGETMIFPVTQQEHGIQFLIKLYS   90 (135)
T ss_pred             cCCeEEEEEEEccCCCcccCCCCCCcEEEEEEEECCCcceeecCccEE-CCCCCceecceEEEeCCchhheeEEEEEEEe
Confidence            34489999999999999877777899999999   22  467888886 774 699999999999765 33478889999


Q ss_pred             ccCCCCCceeEEEEEccccc
Q 045058          505 RVGPGKDEIIGRVIIPLSAI  524 (1005)
Q Consensus       505 ~d~~~~d~~iG~~~i~l~~l  524 (1005)
                      ++..+++++||++.++.+..
T Consensus        91 ~~~~~~n~~IG~v~lG~~~~  110 (135)
T cd08692          91 RSSVRRKHFLGQVWISSDSS  110 (135)
T ss_pred             CCCCcCCceEEEEEECCccC
Confidence            99888999999999999763

Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho

>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins

Probab=99.58  E-value=1.7e-14  Score=134.17  Aligned_cols=112  Identities=30%  Similarity=0.496  Sum_probs=93.3

Q ss_pred             EEEEEEEeecCCCCCCCCCCCcEEEEEECCe-EeeccccCCCCCCceeeEEEEEeccCccccceEEEEEEEeCCCCCCCC
Q 045058            6 LGVQVVGAHNLLPKDGKGSSSAFVELYFDGQ-RFRTTIKENDLNPVWNESFYFNISDASKLHYLTLEAYIYNNIGDTNSR   84 (1005)
Q Consensus         6 l~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~-~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~~~~~d   84 (1005)
                      |+|+|++|++|...+..|.+||||+|.+++. .++|+++.++.||+|||+|.|.+....   ...|.|+|||++. .+++
T Consensus         1 l~v~vi~a~~L~~~~~~~~~dpyv~v~~~~~~~~~T~v~~~~~~P~Wne~f~~~~~~~~---~~~l~~~v~d~~~-~~~~   76 (115)
T cd04040           1 LTVDVISAENLPSADRNGKSDPFVKFYLNGEKVFKTKTIKKTLNPVWNESFEVPVPSRV---RAVLKVEVYDWDR-GGKD   76 (115)
T ss_pred             CEEEEEeeeCCCCCCCCCCCCCeEEEEECCCcceeeceecCCCCCcccccEEEEeccCC---CCEEEEEEEeCCC-CCCC
Confidence            5899999999999888889999999999764 589999999999999999999986532   3689999999954 4689


Q ss_pred             cccEEEEEeCCcccCCCCceeeeEecccCCCcceeeeEEE
Q 045058           85 SFLGKVCLTGNSFVPLSDSVVLHYPLEKRGIFSHVRGELG  124 (1005)
Q Consensus        85 ~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~i~  124 (1005)
                      ++||++.+++.++..... ...|++|.++++  ...|.+.
T Consensus        77 ~~iG~~~~~l~~l~~~~~-~~~~~~L~~~g~--~~~~~~~  113 (115)
T cd04040          77 DLLGSAYIDLSDLEPEET-TELTLPLDGQGG--GKLGAVF  113 (115)
T ss_pred             CceEEEEEEHHHcCCCCc-EEEEEECcCCCC--ccCceEE
Confidence            999999999999876443 468999987654  3456654

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs)

Probab=99.58  E-value=2e-14  Score=134.18  Aligned_cols=112  Identities=29%  Similarity=0.473  Sum_probs=88.1

Q ss_pred             EEEEEEEecCCCCCCCCCCCCCCCcEEEEEECCE-EEEeeeccCCCCceeccEEEEEEeC---CCceEEEEEEeCCCcCC
Q 045058          598 LELGILNAVGLHPMKTRDGRGTSDTYCVAKYGHK-WVRTRTLVDNLSPKYNEQYTWEVFD---PATVLTVGVFDNSQLGE  673 (1005)
Q Consensus       598 l~v~i~~a~~L~~~~~~~~~~~~dpyv~~~~g~~-~~~T~~~~~t~nP~wne~f~~~v~~---~~~~l~i~v~d~~~~~~  673 (1005)
                      |+|+|++|+||+..      +.+||||+++++++ +++|+++++ .||.|||+|.|.+..   ....|.|.+||.+... 
T Consensus         2 L~v~vi~a~~l~~~------~~~dpyv~v~~~~~~~~kT~~~~~-~~P~Wne~f~f~v~~~~~~~~~l~i~v~d~~~~~-   73 (117)
T cd08383           2 LRLRILEAKNLPSK------GTRDPYCTVSLDQVEVARTKTVEK-LNPFWGEEFVFDDPPPDVTFFTLSFYNKDKRSKD-   73 (117)
T ss_pred             eEEEEEEecCCCcC------CCCCceEEEEECCEEeEecceEEC-CCCcccceEEEecCCccccEEEEEEEEEecccCC-
Confidence            78999999999852      68999999999885 579999999 999999999999976   3457888888886433 


Q ss_pred             CCCCCCCcccEEEEEEcccccCCCEEeeeEeeeecCCCCCceeeEEEEEEEE
Q 045058          674 KSNGNKDLKIGKVRIRISTLETGRIYTHSYPLLVLHPTGVKKMGELHLAIRF  725 (1005)
Q Consensus       674 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~G~i~l~~~~  725 (1005)
                           ++..+|++.|  ..+..+...+.||+|......+ ...|+|+|+++|
T Consensus        74 -----~~~~~g~v~l--~~~~~~~~~~~w~~L~~~~~~~-~~~G~l~l~~~~  117 (117)
T cd08383          74 -----RDIVIGKVAL--SKLDLGQGKDEWFPLTPVDPDS-EVQGSVRLRARY  117 (117)
T ss_pred             -----CeeEEEEEEe--cCcCCCCcceeEEECccCCCCC-CcCceEEEEEEC
Confidence                 5666776555  4455566678999997554433 346999999875

RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2

>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins

Probab=99.57  E-value=1.4e-14  Score=136.50  Aligned_cols=110  Identities=21%  Similarity=0.388  Sum_probs=91.8

Q ss_pred             ceeeeccccceeEEEEEEEEeecCCCCC-CCCCCCcEEEEEECC-----eeeeeeeecCCCCCeeeeEEEEeecC--CCC
Q 045058          259 TASTYDLVERMYFLYVRVVKARELPAMD-LTGSIDPFVEVKIGN-----YKGITKHYEKNQNPQWHQVFAFSRDR--MQA  330 (1005)
Q Consensus       259 ~~~~~~~~~~~~~L~V~v~~a~~L~~~~-~~g~~dPyv~v~~~~-----~~~kT~~~~~~~nP~wne~f~f~~~~--~~~  330 (1005)
                      ++..|+  ...+.|.|+|++|+||+..+ ..+.+||||++++.+     .+.+|++++++.||.|||+|.|.+..  +..
T Consensus         5 ~~l~y~--~~~~~L~V~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~i~~~~l~~   82 (123)
T cd08521           5 FSLSYN--YKTGSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRKTSVKKNTTNPVFNETLKYHISKSQLET   82 (123)
T ss_pred             EEEEEe--CCCCEEEEEEEEecCCCCcCCCCCCCCcEEEEEEecCCCcCceeeccccCCCCCCcccceEEEeCCHHHhCC
Confidence            444554  34589999999999999988 778999999999853     35789999999999999999998754  345


Q ss_pred             cEEEEEEEeCC-CCCCceeEEEEEEceecCCCCCCCCCCCCeEEEe
Q 045058          331 SVLEVVIKDKD-LVKDDFVGIVRFDINEVPLRVPPDSPLAPEWYRL  375 (1005)
Q Consensus       331 ~~l~v~V~d~~-~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L  375 (1005)
                      ..|.|+|||++ .+++++||++.++|.++..+     .....||+|
T Consensus        83 ~~l~i~v~d~~~~~~~~~iG~~~i~l~~l~~~-----~~~~~w~~l  123 (123)
T cd08521          83 RTLQLSVWHHDRFGRNTFLGEVEIPLDSWDLD-----SQQSEWYPL  123 (123)
T ss_pred             CEEEEEEEeCCCCcCCceeeEEEEeccccccc-----CCCccEEEC
Confidence            68999999999 77899999999999999654     346889986

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into

>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins

Probab=99.57  E-value=2.5e-14  Score=133.05  Aligned_cols=112  Identities=29%  Similarity=0.402  Sum_probs=94.5

Q ss_pred             EEEEEEEecCCCCCCCCCCCCCCCcEEEEEECC-EEEEeeeccCCCCceeccEEEEEEeC-CCceEEEEEEeCCCcCCCC
Q 045058          598 LELGILNAVGLHPMKTRDGRGTSDTYCVAKYGH-KWVRTRTLVDNLSPKYNEQYTWEVFD-PATVLTVGVFDNSQLGEKS  675 (1005)
Q Consensus       598 l~v~i~~a~~L~~~~~~~~~~~~dpyv~~~~g~-~~~~T~~~~~t~nP~wne~f~~~v~~-~~~~l~i~v~d~~~~~~~~  675 (1005)
                      |+|+|++|++|+..+   ..+.+||||++.+++ +.++|+++.++.||.|||.|.|.+.. ....|.|+|||++..+   
T Consensus         1 l~v~vi~a~~L~~~~---~~~~~dpyv~v~~~~~~~~~T~v~~~~~~P~Wne~f~~~~~~~~~~~l~~~v~d~~~~~---   74 (115)
T cd04040           1 LTVDVISAENLPSAD---RNGKSDPFVKFYLNGEKVFKTKTIKKTLNPVWNESFEVPVPSRVRAVLKVEVYDWDRGG---   74 (115)
T ss_pred             CEEEEEeeeCCCCCC---CCCCCCCeEEEEECCCcceeeceecCCCCCcccccEEEEeccCCCCEEEEEEEeCCCCC---
Confidence            579999999999754   467889999999965 45799999999999999999999987 4679999999998765   


Q ss_pred             CCCCCcccEEEEEEcccccCCCEEeeeEeeeecCCCCCceeeEEEE
Q 045058          676 NGNKDLKIGKVRIRISTLETGRIYTHSYPLLVLHPTGVKKMGELHL  721 (1005)
Q Consensus       676 ~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~G~i~l  721 (1005)
                         ++++||++.+++.++..+.....|++|..   .|..+.|.+.+
T Consensus        75 ---~~~~iG~~~~~l~~l~~~~~~~~~~~L~~---~g~~~~~~~~~  114 (115)
T cd04040          75 ---KDDLLGSAYIDLSDLEPEETTELTLPLDG---QGGGKLGAVFL  114 (115)
T ss_pred             ---CCCceEEEEEEHHHcCCCCcEEEEEECcC---CCCccCceEEc
Confidence               89999999999999999888899999963   23234477654

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins

Probab=99.57  E-value=2.6e-14  Score=133.04  Aligned_cols=104  Identities=20%  Similarity=0.325  Sum_probs=89.2

Q ss_pred             cEEEEEEEEeecCCCCCCCCCCCcEEEEEECCe-EeeccccCCCCCCceeeEEEEEeccCccccceEEEEEEEeCCCCCC
Q 045058            4 LKLGVQVVGAHNLLPKDGKGSSSAFVELYFDGQ-RFRTTIKENDLNPVWNESFYFNISDASKLHYLTLEAYIYNNIGDTN   82 (1005)
Q Consensus         4 ~~l~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~-~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~~~~   82 (1005)
                      |.|+|+|++|++|+..+..|.+||||+|++++. +++|+++.++.||+|||+|.|.+....    ..|.|+|||++. .+
T Consensus         1 g~L~V~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~~~~----~~L~v~v~d~~~-~~   75 (120)
T cd04045           1 GVLRLHIRKANDLKNLEGVGKIDPYVRVLVNGIVKGRTVTISNTLNPVWDEVLYVPVTSPN----QKITLEVMDYEK-VG   75 (120)
T ss_pred             CeEEEEEEeeECCCCccCCCCcCCEEEEEECCEEeeceeEECCCcCCccCceEEEEecCCC----CEEEEEEEECCC-CC
Confidence            579999999999999998899999999999874 789999999999999999999986543    489999999954 56


Q ss_pred             CCcccEEEEEeCCcccCCCCceeeeEecccCC
Q 045058           83 SRSFLGKVCLTGNSFVPLSDSVVLHYPLEKRG  114 (1005)
Q Consensus        83 ~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~  114 (1005)
                      .|++||++.+++.++.....  +.||.|-+.+
T Consensus        76 ~d~~IG~~~~~l~~l~~~~~--~~~~~~~~~~  105 (120)
T cd04045          76 KDRSLGSVEINVSDLIKKNE--DGKYVEYDDE  105 (120)
T ss_pred             CCCeeeEEEEeHHHhhCCCC--CceEEecCCC
Confidence            89999999999999877643  4587776554

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins

Probab=99.56  E-value=2.4e-14  Score=137.55  Aligned_cols=100  Identities=29%  Similarity=0.539  Sum_probs=88.3

Q ss_pred             cceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECCe-----------------------------eeeeeeecCCCCCee
Q 045058          267 ERMYFLYVRVVKARELPAMDLTGSIDPFVEVKIGNY-----------------------------KGITKHYEKNQNPQW  317 (1005)
Q Consensus       267 ~~~~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~~~-----------------------------~~kT~~~~~~~nP~w  317 (1005)
                      ++.+.|.|+|++|++|...|.+|.+||||++.+.+.                             .++|++++++.||.|
T Consensus        25 ~~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W  104 (153)
T cd08676          25 PPIFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQTLNPVW  104 (153)
T ss_pred             CCeEEEEEEEEeccCCcccCCCCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceecCCCCCcc
Confidence            456899999999999999999999999999998642                             368999999999999


Q ss_pred             eeEEEEeecCCCCcEEEEEEEeCCCCCCceeEEEEEEceecCCCCCCCCCCCCeEEEe
Q 045058          318 HQVFAFSRDRMQASVLEVVIKDKDLVKDDFVGIVRFDINEVPLRVPPDSPLAPEWYRL  375 (1005)
Q Consensus       318 ne~f~f~~~~~~~~~l~v~V~d~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L  375 (1005)
                      ||+|.|.+..+....|.|+|||++   +++||++.+++.++..      .....||+|
T Consensus       105 nE~F~f~v~~~~~~~L~i~V~D~d---d~~IG~v~i~l~~l~~------~~~d~W~~L  153 (153)
T cd08676         105 NETFRFEVEDVSNDQLHLDIWDHD---DDFLGCVNIPLKDLPS------CGLDSWFKL  153 (153)
T ss_pred             ccEEEEEeccCCCCEEEEEEEecC---CCeEEEEEEEHHHhCC------CCCCCeEeC
Confidence            999999998776689999999997   8999999999999973      246889986

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy

>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4

Probab=99.55  E-value=1.1e-14  Score=139.43  Aligned_cols=107  Identities=22%  Similarity=0.335  Sum_probs=88.2

Q ss_pred             CcEEEEEEEEeecCCCCCCCCCCCcEEEEEEC--C---eEeeccccCCCCCCceeeEEEEEeccCccccceEEEEEEEeC
Q 045058            3 NLKLGVQVVGAHNLLPKDGKGSSSAFVELYFD--G---QRFRTTIKENDLNPVWNESFYFNISDASKLHYLTLEAYIYNN   77 (1005)
Q Consensus         3 ~~~l~V~v~~a~~L~~~d~~g~~dpyv~v~~~--~---~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~   77 (1005)
                      .+.|.|+|++|+||+.+|..|.+||||+|++.  +   .+.||+++++++||+|||+|.|.+...+ .....|.|+|||+
T Consensus        14 ~~~L~V~vi~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~k~t~nP~w~e~F~f~v~~~~-~~~~~l~~~v~d~   92 (136)
T cd08404          14 TNRLTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNESFVFDIPSEE-LEDISVEFLVLDS   92 (136)
T ss_pred             CCeEEEEEEEeeCCCccccCCCCCeEEEEEEEcCCceeeeEcCccccCCCCCccCceEEEECCHHH-hCCCEEEEEEEEC
Confidence            46899999999999999999999999999984  2   2578999999999999999999986432 3456899999999


Q ss_pred             CCCCCCCcccEEEEEeCCcccCCCCceeeeEecccCC
Q 045058           78 IGDTNSRSFLGKVCLTGNSFVPLSDSVVLHYPLEKRG  114 (1005)
Q Consensus        78 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~  114 (1005)
                      +. .+++++||++.+++.. .  +.....|++|....
T Consensus        93 d~-~~~~~~iG~~~~~~~~-~--~~~~~~w~~l~~~~  125 (136)
T cd08404          93 DR-VTKNEVIGRLVLGPKA-S--GSGGHHWKEVCNPP  125 (136)
T ss_pred             CC-CCCCccEEEEEECCcC-C--CchHHHHHHHHhCC
Confidence            65 5689999999999888 2  33345799886543

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s

>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain

Probab=99.55  E-value=1e-14  Score=139.41  Aligned_cols=106  Identities=27%  Similarity=0.429  Sum_probs=87.9

Q ss_pred             CcEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eEeeccccCCCCCCceeeEEEEEeccCccccceEEEEEEEeC
Q 045058            3 NLKLGVQVVGAHNLLPKDGKGSSSAFVELYFDG-----QRFRTTIKENDLNPVWNESFYFNISDASKLHYLTLEAYIYNN   77 (1005)
Q Consensus         3 ~~~l~V~v~~a~~L~~~d~~g~~dpyv~v~~~~-----~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~   77 (1005)
                      .+.|.|+|++|+||+.+|..|.+||||+|++.+     .+++|+++++++||+|||+|.|.+...+ +....|.|+|||+
T Consensus        12 ~~~L~V~Vi~a~~L~~~d~~~~~DpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~-l~~~~l~~~V~d~   90 (133)
T cd08384          12 RRGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYDIKHSD-LAKKTLEITVWDK   90 (133)
T ss_pred             CCEEEEEEEEEcCCCCcCCCCCCCcEEEEEEEcCCCccCCceeeeEeccCCCCcccEEEEECCHHH-hCCCEEEEEEEeC
Confidence            478999999999999999889999999999842     3689999999999999999999986532 4456899999998


Q ss_pred             CCCCCCCcccEEEEEeCCcccCCCCceeeeEecccC
Q 045058           78 IGDTNSRSFLGKVCLTGNSFVPLSDSVVLHYPLEKR  113 (1005)
Q Consensus        78 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~  113 (1005)
                      +. .+++++||++.+++..   .++....|+++.+.
T Consensus        91 d~-~~~~~~lG~~~i~l~~---~~~~~~~W~~~l~~  122 (133)
T cd08384          91 DI-GKSNDYIGGLQLGINA---KGERLRHWLDCLKN  122 (133)
T ss_pred             CC-CCCccEEEEEEEecCC---CCchHHHHHHHHhC
Confidence            54 4589999999999875   23344579887544

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai

>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17

Probab=99.55  E-value=5.5e-14  Score=132.51  Aligned_cols=112  Identities=29%  Similarity=0.414  Sum_probs=92.7

Q ss_pred             ceeeeccccceeEEEEEEEEeecCCCCC-CCCCCCcEEEEEECC---eeeeeeeecCCCCCeeeeEEEEeecC--CCCcE
Q 045058          259 TASTYDLVERMYFLYVRVVKARELPAMD-LTGSIDPFVEVKIGN---YKGITKHYEKNQNPQWHQVFAFSRDR--MQASV  332 (1005)
Q Consensus       259 ~~~~~~~~~~~~~L~V~v~~a~~L~~~~-~~g~~dPyv~v~~~~---~~~kT~~~~~~~nP~wne~f~f~~~~--~~~~~  332 (1005)
                      ++..|+.  ..+.|.|+|++|++|+..+ ..+.+||||++++.+   ...+|++++++.||+|||.|.|.+..  +....
T Consensus         5 ~~l~y~~--~~~~L~V~v~~a~~L~~~~~~~~~~dpyV~v~l~~~~~~~~~T~v~~~~~~P~wne~f~f~i~~~~l~~~~   82 (123)
T cd08390           5 FSVQYDL--EEEQLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDERRSLQSKVKRKTQNPNFDETFVFQVSFKELQRRT   82 (123)
T ss_pred             EEEEECC--CCCEEEEEEEEecCCCCccCCCCCCCcEEEEEEeeCCCCceEeeeEcCCCCCccceEEEEEcCHHHhcccE
Confidence            4445544  4588999999999999988 688999999999853   45789999999999999999998753  33468


Q ss_pred             EEEEEEeCC-CCCCceeEEEEEEceecCCCCCCCCCCCCeEEEeec
Q 045058          333 LEVVIKDKD-LVKDDFVGIVRFDINEVPLRVPPDSPLAPEWYRLED  377 (1005)
Q Consensus       333 l~v~V~d~~-~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~  377 (1005)
                      |.|+|||++ .+++++||++.++|.++...     .....|++|+.
T Consensus        83 l~i~v~d~~~~~~~~~iG~~~i~L~~l~~~-----~~~~~w~~L~~  123 (123)
T cd08390          83 LRLSVYDVDRFSRHCIIGHVLFPLKDLDLV-----KGGVVWRDLEP  123 (123)
T ss_pred             EEEEEEECCcCCCCcEEEEEEEeccceecC-----CCceEEEeCCC
Confidence            999999998 67899999999999999864     34578999863

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat

>cd04032 C2_Perforin C2 domain of Perforin

Probab=99.55  E-value=3.2e-14  Score=132.40  Aligned_cols=92  Identities=26%  Similarity=0.312  Sum_probs=81.1

Q ss_pred             ceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeeecCCCCCeeeeEEEEeecC-CCCcEEEEEEEeCC-CCCC
Q 045058          268 RMYFLYVRVVKARELPAMDLTGSIDPFVEVKIGNYKGITKHYEKNQNPQWHQVFAFSRDR-MQASVLEVVIKDKD-LVKD  345 (1005)
Q Consensus       268 ~~~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~~~~~kT~~~~~~~nP~wne~f~f~~~~-~~~~~l~v~V~d~~-~~~d  345 (1005)
                      .++.|+|+|++|++|+. +..+.+||||+|+++++.+||++++++.||+|||+|.|.... .....|.|+|||++ .++|
T Consensus        26 ~~~~L~V~V~~A~~L~~-d~~g~~DPYVkV~~~~~~~kT~vi~~t~nPvWNE~F~f~~~~~~~~~~L~v~V~D~d~~s~d  104 (127)
T cd04032          26 GLATLTVTVLRATGLWG-DYFTSTDGYVKVFFGGQEKRTEVIWNNNNPRWNATFDFGSVELSPGGKLRFEVWDRDNGWDD  104 (127)
T ss_pred             CcEEEEEEEEECCCCCc-CcCCCCCeEEEEEECCccccCceecCCCCCcCCCEEEEecccCCCCCEEEEEEEeCCCCCCC
Confidence            45899999999999984 667889999999999999999999999999999999997433 34578999999999 7799


Q ss_pred             ceeEEEEEEceecCC
Q 045058          346 DFVGIVRFDINEVPL  360 (1005)
Q Consensus       346 ~~lG~~~i~l~~l~~  360 (1005)
                      ++||++.++|.....
T Consensus       105 d~IG~~~i~l~~~~~  119 (127)
T cd04032         105 DLLGTCSVVPEAGVH  119 (127)
T ss_pred             CeeEEEEEEecCCce
Confidence            999999999996653

Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few

>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins

Probab=99.54  E-value=3.8e-14  Score=135.00  Aligned_cols=98  Identities=29%  Similarity=0.372  Sum_probs=82.9

Q ss_pred             CcEEEEEEEEeecCCCCCCCCCCCcEEEEEEC-------CeEeeccccCCCCCCceeeEEEEEeccCc-cccceEEEEEE
Q 045058            3 NLKLGVQVVGAHNLLPKDGKGSSSAFVELYFD-------GQRFRTTIKENDLNPVWNESFYFNISDAS-KLHYLTLEAYI   74 (1005)
Q Consensus         3 ~~~l~V~v~~a~~L~~~d~~g~~dpyv~v~~~-------~~~~~T~v~~~t~nP~Wne~f~f~v~~~~-~~~~~~l~v~V   74 (1005)
                      ...|+|+|++|++|+.++..|.+||||+|++.       ..++||+++++++||+|||+|.|.+.... ......|.|+|
T Consensus        15 ~~~L~V~Vi~A~~L~~~~~~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~~~~~~~~l~~~V   94 (133)
T cd04009          15 EQSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEFNVPPEQCSVEGALLLFTV   94 (133)
T ss_pred             CCEEEEEEEEeeCCCCcCCCCCCCCEEEEEEECCCcCccccccccccCcCCCCCccCCEEEEEechhhcccCCCEEEEEE
Confidence            36899999999999999888999999999985       34789999999999999999999986532 12346899999


Q ss_pred             EeCCCCCCCCcccEEEEEeCCcccCCC
Q 045058           75 YNNIGDTNSRSFLGKVCLTGNSFVPLS  101 (1005)
Q Consensus        75 ~d~~~~~~~d~~lG~~~i~l~~l~~~~  101 (1005)
                      ||++. .++|++||++.++|.++...+
T Consensus        95 ~d~d~-~~~d~~iG~~~i~l~~l~~~~  120 (133)
T cd04009          95 KDYDL-LGSNDFEGEAFLPLNDIPGVE  120 (133)
T ss_pred             EecCC-CCCCcEeEEEEEeHHHCCccc
Confidence            99964 457999999999999986443

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s

>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins

Probab=99.54  E-value=3.1e-14  Score=130.89  Aligned_cols=101  Identities=23%  Similarity=0.428  Sum_probs=84.3

Q ss_pred             CCCCCCcEEEEEECCe-EeeccccCCCCCCceeeEEEEEeccCccccceEEEEEEEeCCCCCCCCcccEEEEEeCCcccC
Q 045058           21 GKGSSSAFVELYFDGQ-RFRTTIKENDLNPVWNESFYFNISDASKLHYLTLEAYIYNNIGDTNSRSFLGKVCLTGNSFVP   99 (1005)
Q Consensus        21 ~~g~~dpyv~v~~~~~-~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~~~~~d~~lG~~~i~l~~l~~   99 (1005)
                      .+|.+||||+|+++++ .++|++++++.||+|||+|.|.+.+..   ...|.|.|||++ .. +|++||++.++|+++..
T Consensus         9 ~~G~~dPYv~v~v~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~---~~~l~i~v~d~~-~~-~d~~iG~~~v~L~~l~~   83 (111)
T cd04052           9 KTGLLSPYAELYLNGKLVYTTRVKKKTNNPSWNASTEFLVTDRR---KSRVTVVVKDDR-DR-HDPVLGSVSISLNDLID   83 (111)
T ss_pred             cCCCCCceEEEEECCEEEEEEeeeccCCCCccCCceEEEecCcC---CCEEEEEEEECC-CC-CCCeEEEEEecHHHHHh
Confidence            4688999999999885 579999999999999999999986542   357999999985 44 89999999999999865


Q ss_pred             CCCceeeeEecccCCCcceeeeEEEEEEEEec
Q 045058          100 LSDSVVLHYPLEKRGIFSHVRGELGLKVYITD  131 (1005)
Q Consensus       100 ~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~~~  131 (1005)
                      .+.....||+|.+     ..+|+|++++.|.+
T Consensus        84 ~~~~~~~w~~L~~-----~~~G~i~~~~~~~p  110 (111)
T cd04052          84 ATSVGQQWFPLSG-----NGQGRIRISALWKP  110 (111)
T ss_pred             hhhccceeEECCC-----CCCCEEEEEEEEec
Confidence            5444468999985     23699999998865

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1

Probab=99.53  E-value=4.8e-14  Score=135.19  Aligned_cols=107  Identities=27%  Similarity=0.337  Sum_probs=87.5

Q ss_pred             CcEEEEEEEEeecCCCCCCCCCCCcEEEEEEC--C---eEeeccccCCCCCCceeeEEEEEeccCccccceEEEEEEEeC
Q 045058            3 NLKLGVQVVGAHNLLPKDGKGSSSAFVELYFD--G---QRFRTTIKENDLNPVWNESFYFNISDASKLHYLTLEAYIYNN   77 (1005)
Q Consensus         3 ~~~l~V~v~~a~~L~~~d~~g~~dpyv~v~~~--~---~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~   77 (1005)
                      .+.|.|+|++|++|+.++..|.+||||+|++.  +   .+++|+++++++||+|||+|.|.+... .+....|.|+|||+
T Consensus        14 ~~~l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~-~l~~~~l~~~v~d~   92 (136)
T cd08402          14 AGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNESFSFEVPFE-QIQKVHLIVTVLDY   92 (136)
T ss_pred             CCeEEEEEEEeeCCCcccCCCCCCCeEEEEEEECCcccceeeccceeCCCCCcccceEEEECCHH-HhCCCEEEEEEEeC
Confidence            47899999999999999999999999999984  2   357899999999999999999998543 24446899999999


Q ss_pred             CCCCCCCcccEEEEEeCCcccCCCCceeeeEecccCC
Q 045058           78 IGDTNSRSFLGKVCLTGNSFVPLSDSVVLHYPLEKRG  114 (1005)
Q Consensus        78 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~  114 (1005)
                      +. .++|++||++.+++...   +.....|+++....
T Consensus        93 ~~-~~~~~~iG~~~i~~~~~---~~~~~~W~~~~~~~  125 (136)
T cd08402          93 DR-IGKNDPIGKVVLGCNAT---GAELRHWSDMLASP  125 (136)
T ss_pred             CC-CCCCceeEEEEECCccC---ChHHHHHHHHHhCC
Confidence            64 56899999999998753   33345788876543

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:

>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs)

Probab=99.53  E-value=4.8e-14  Score=134.42  Aligned_cols=102  Identities=29%  Similarity=0.474  Sum_probs=89.6

Q ss_pred             EEEEEEEeecCCCCCCCCCCCcEEEEEEC----CeeeeeeeecCCCCCeeeeEEEEeecCC---------------CCcE
Q 045058          272 LYVRVVKARELPAMDLTGSIDPFVEVKIG----NYKGITKHYEKNQNPQWHQVFAFSRDRM---------------QASV  332 (1005)
Q Consensus       272 L~V~v~~a~~L~~~~~~g~~dPyv~v~~~----~~~~kT~~~~~~~nP~wne~f~f~~~~~---------------~~~~  332 (1005)
                      |.|+|++|++|+.+ ..+.+||||+++++    +..++|+++.++.||.|||+|.|.+...               ....
T Consensus         1 L~V~Vi~A~~L~~~-~~g~~dPyv~v~~~~~~~~~~~rT~vv~~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~~   79 (137)
T cd08675           1 LSVRVLECRDLALK-SNGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKSE   79 (137)
T ss_pred             CEEEEEEccCCCcc-cCCCCCcEEEEEEecCCcCCeeccceeeCCCCCCcceEEEEEccccccccccccccccccccccE
Confidence            56999999999988 78899999999998    6778999999999999999999997654               4578


Q ss_pred             EEEEEEeCC-CCCCceeEEEEEEceecCCCCCCCCCCCCeEEEeecCC
Q 045058          333 LEVVIKDKD-LVKDDFVGIVRFDINEVPLRVPPDSPLAPEWYRLEDKK  379 (1005)
Q Consensus       333 l~v~V~d~~-~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~  379 (1005)
                      |.|+|||++ .+++++||++.+++.++...     .....|++|....
T Consensus        80 l~i~V~d~~~~~~~~~IG~~~i~l~~l~~~-----~~~~~W~~L~~~~  122 (137)
T cd08675          80 LRVELWHASMVSGDDFLGEVRIPLQGLQQA-----GSHQAWYFLQPRE  122 (137)
T ss_pred             EEEEEEcCCcCcCCcEEEEEEEehhhccCC-----CcccceEecCCcC
Confidence            999999999 66899999999999998753     3468899998875

RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin

>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1)

Probab=99.53  E-value=1.7e-13  Score=129.58  Aligned_cols=115  Identities=23%  Similarity=0.345  Sum_probs=94.3

Q ss_pred             EEEEEEEeecCCCCCCCCCCCcEEEEEECC-------------eeeeeeeecCCCCCee-eeEEEEeecCCCCcEEEEEE
Q 045058          272 LYVRVVKARELPAMDLTGSIDPFVEVKIGN-------------YKGITKHYEKNQNPQW-HQVFAFSRDRMQASVLEVVI  337 (1005)
Q Consensus       272 L~V~v~~a~~L~~~~~~g~~dPyv~v~~~~-------------~~~kT~~~~~~~nP~w-ne~f~f~~~~~~~~~l~v~V  337 (1005)
                      +.|++++|+||+ ++..|.+||||++++.+             +.++|+++++++||+| ||.|.|.+..  ++.|.|+|
T Consensus         3 ~~~~~~~A~~L~-~~~fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W~nE~f~f~v~~--~~~L~v~V   79 (137)
T cd08691           3 FSLSGLQARNLK-KGMFFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVENTINPVWHREQFVFVGLP--TDVLEIEV   79 (137)
T ss_pred             EEEEEEEeCCCC-CccCCCCCceEEEEEECCCcccccccccccceeeeeeEcCCCCCceEceEEEEEcCC--CCEEEEEE
Confidence            569999999998 67789999999999953             3689999999999999 9999998853  46899999


Q ss_pred             EeCCC-CC---CceeEEEEEEceecCCCCCCCCCCCCeEEEeecCCCCc-cceEEEEEE
Q 045058          338 KDKDL-VK---DDFVGIVRFDINEVPLRVPPDSPLAPEWYRLEDKKGEK-IKGELMLAV  391 (1005)
Q Consensus       338 ~d~~~-~~---d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~-~~G~i~l~~  391 (1005)
                      ||++. ++   +++||++.+++.++.....  ......|++|......+ ..|+|.+.+
T Consensus        80 ~D~~~~~~~~~~d~lG~~~i~l~~l~~~~~--~~~~~~~~~l~k~~~~s~v~G~~~l~~  136 (137)
T cd08691          80 KDKFAKSRPIIRRFLGKLSIPVQRLLERHA--IGDQELSYTLGRRTPTDHVSGQLTFRF  136 (137)
T ss_pred             EecCCCCCccCCceEEEEEEEHHHhccccc--CCceEEEEECCcCCCCCcEEEEEEEEe
Confidence            99863 32   7999999999999976522  23467899998765443 789998865

NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C

>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17

Probab=99.53  E-value=1.9e-14  Score=137.34  Aligned_cols=108  Identities=22%  Similarity=0.373  Sum_probs=86.0

Q ss_pred             CcEEEEEEEEeecCCCCCCCCCCCcEEEEEEC-C----eEeeccccCCCCCCceeeEEEEEeccCccccceEEEEEEEeC
Q 045058            3 NLKLGVQVVGAHNLLPKDGKGSSSAFVELYFD-G----QRFRTTIKENDLNPVWNESFYFNISDASKLHYLTLEAYIYNN   77 (1005)
Q Consensus         3 ~~~l~V~v~~a~~L~~~d~~g~~dpyv~v~~~-~----~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~   77 (1005)
                      .+.|.|+|++|+||..+|..|.+||||+|++. +    .+++|+++++|+||+|||+|.|.+...+ +....|.|+|||+
T Consensus        13 ~~~L~V~vi~a~~L~~~d~~g~~DPyV~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~F~f~i~~~~-l~~~~l~~~V~d~   91 (135)
T cd08410          13 AGRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKTSCMRGTIDPFYNESFSFKVPQEE-LENVSLVFTVYGH   91 (135)
T ss_pred             CCeEEEEEEEecCCCcccCCCCCCeEEEEEEEcCCcccceEcCccccCCCCCccceeEEEeCCHHH-hCCCEEEEEEEeC
Confidence            47899999999999999999999999999972 2    2579999999999999999999985432 4445799999999


Q ss_pred             CCCCCCCcccEEEEEeCCcccCCCCceeeeEecccCC
Q 045058           78 IGDTNSRSFLGKVCLTGNSFVPLSDSVVLHYPLEKRG  114 (1005)
Q Consensus        78 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~  114 (1005)
                      + ..+++++||++.|....  ..+.....|+.|....
T Consensus        92 d-~~~~~~~iG~~~l~~~~--~~~~~~~~W~~l~~~~  125 (135)
T cd08410          92 N-VKSSNDFIGRIVIGQYS--SGPSETNHWRRMLNSQ  125 (135)
T ss_pred             C-CCCCCcEEEEEEEcCcc--CCchHHHHHHHHHhCC
Confidence            5 45689999999876433  3333345798876553

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-

>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.53  E-value=9.3e-15  Score=152.90  Aligned_cols=105  Identities=27%  Similarity=0.479  Sum_probs=94.5

Q ss_pred             EEEEEEEEeeeCCCCCCCCCCCcEEEEEE-----CCeEEeeecccCCCCCcccccEEEEEeeCC-CCCeEEEEEEeccCC
Q 045058          435 YVRVNVVEAQDLVPTEKNHFPDVYVKAQI-----GNQVLKTKICQARTLSAVWNEDLLFVAAEP-FEDHLVLTVEDRVGP  508 (1005)
Q Consensus       435 ~L~V~v~~a~~L~~~d~~~~~dpyv~v~l-----g~~~~kT~~~~~~t~~P~w~e~f~f~v~~~-~~~~l~i~V~d~d~~  508 (1005)
                      .|.|.|.+|+||.++|.+|.+||||++.+     +..+++|++++ .++||+|||+|.|.+... .+..|.|+|||||..
T Consensus       181 ~l~v~i~ea~NLiPMDpNGlSDPYvk~kliPD~~~~sKqKTkTik-~~LNP~wNEtftf~Lkp~DkdrRlsiEvWDWDrT  259 (683)
T KOG0696|consen  181 VLTVTIKEAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIK-ATLNPVWNETFTFKLKPSDKDRRLSIEVWDWDRT  259 (683)
T ss_pred             eEEEEehhhccccccCCCCCCCcceeEEeccCCcchhhhhhhhhh-hhcCccccceeEEecccccccceeEEEEeccccc
Confidence            79999999999999999999999999999     34678999997 999999999999998655 667999999999999


Q ss_pred             CCCceeEEEEEcccccccccccccccceeEEccCCCc
Q 045058          509 GKDEIIGRVIIPLSAIEKRADERIIHSRWFNLEKPVA  545 (1005)
Q Consensus       509 ~~d~~iG~~~i~l~~l~~~~~~~~~~~~w~~L~~~~~  545 (1005)
                      ++++++|..++.+++|....     .+.||.|.....
T Consensus       260 sRNDFMGslSFgisEl~K~p-----~~GWyKlLsqeE  291 (683)
T KOG0696|consen  260 SRNDFMGSLSFGISELQKAP-----VDGWYKLLSQEE  291 (683)
T ss_pred             ccccccceecccHHHHhhcc-----hhhHHHHhhhhc
Confidence            99999999999999998763     788998877653

>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein

Probab=99.53  E-value=1.5e-13  Score=123.70  Aligned_cols=85  Identities=21%  Similarity=0.384  Sum_probs=68.0

Q ss_pred             EEEEEEEecCCCCCCCCCCCCCCCcEEEEEECC-----EEEEeeeccCCCCceeccEEEEEEeCCCceEEEEEEeCCC-c
Q 045058          598 LELGILNAVGLHPMKTRDGRGTSDTYCVAKYGH-----KWVRTRTLVDNLSPKYNEQYTWEVFDPATVLTVGVFDNSQ-L  671 (1005)
Q Consensus       598 l~v~i~~a~~L~~~~~~~~~~~~dpyv~~~~g~-----~~~~T~~~~~t~nP~wne~f~~~v~~~~~~l~i~v~d~~~-~  671 (1005)
                      |.|+|++|+||+        +.+||||++.+++     ..+||+++++|+||+|||+|+|++.. ...|.+.|||++. .
T Consensus         1 L~V~V~~A~~L~--------~~sDPYV~l~v~~~~~~~~~~KTk~i~~TlnPvWnE~F~i~l~~-s~~L~~~v~d~~~~~   71 (118)
T cd08686           1 LNVIVHSAQGFK--------QSANLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNEEFEIELEG-SQTLRILCYEKCYSK   71 (118)
T ss_pred             CEEEEEeCCCCC--------CCCCCEEEEEEcCccccceeeeeeeecCCCCCccceEEEEEeCC-CCEEEEEEEEccccc
Confidence            679999999996        3589999999853     35899999999999999999999864 6799999999831 0


Q ss_pred             -CCCCCCCCCcccEEEEEEccc
Q 045058          672 -GEKSNGNKDLKIGKVRIRIST  692 (1005)
Q Consensus       672 -~~~~~~~~d~~lG~~~i~l~~  692 (1005)
                       ..+ ...+|+.+|++.|.|..
T Consensus        72 ~~~d-~~~~d~~~G~g~i~Ld~   92 (118)
T cd08686          72 VKLD-GEGTDAIMGKGQIQLDP   92 (118)
T ss_pred             cccc-ccCcccEEEEEEEEECH
Confidence             000 22389999998888754

The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr

>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus)

Probab=99.52  E-value=8.8e-14  Score=129.05  Aligned_cols=105  Identities=14%  Similarity=0.133  Sum_probs=83.6

Q ss_pred             CcceEEEEEEEEecCCCCCCCCCCCCCCCcEEEEEE--CC---EEEEeeeccCCC-CceeccEEEEEEeCC--CceEEEE
Q 045058          593 PSIGILELGILNAVGLHPMKTRDGRGTSDTYCVAKY--GH---KWVRTRTLVDNL-SPKYNEQYTWEVFDP--ATVLTVG  664 (1005)
Q Consensus       593 ~~~g~l~v~i~~a~~L~~~~~~~~~~~~dpyv~~~~--g~---~~~~T~~~~~t~-nP~wne~f~~~v~~~--~~~l~i~  664 (1005)
                      |..|+|+|+|++|+||++++  + .+.+||||++.+  ++   ++.||+++++|+ ||+|||+|.|+|..+  ...|.|+
T Consensus        11 p~~~rLtV~VikarnL~~~~--~-~~~~dpYVKV~L~~~~k~~~KkKT~v~k~t~~~P~fNEsF~Fdv~~~~~~v~l~v~   87 (135)
T cd08692          11 AVNSRIQLQILEAQNLPSSS--T-PLTLSFFVKVGMFSTGGLLYKKKTRLVKSSNGQVKWGETMIFPVTQQEHGIQFLIK   87 (135)
T ss_pred             CcCCeEEEEEEEccCCCccc--C-CCCCCcEEEEEEEECCCcceeecCccEECCCCCceecceEEEeCCchhheeEEEEE
Confidence            66799999999999999864  2 455699999987  22   246899999995 699999999999753  4578899


Q ss_pred             EEeCCCcCCCCCCCCCcccEEEEEEcccccCCCEEeeeEeeee
Q 045058          665 VFDNSQLGEKSNGNKDLKIGKVRIRISTLETGRIYTHSYPLLV  707 (1005)
Q Consensus       665 v~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~  707 (1005)
                      |||++..+      ++++||++.++.+... +...++|..+..
T Consensus        88 v~d~~~~~------~n~~IG~v~lG~~~~~-~~~~~hW~~m~~  123 (135)
T cd08692          88 LYSRSSVR------RKHFLGQVWISSDSSS-SEAVEQWKDTIA  123 (135)
T ss_pred             EEeCCCCc------CCceEEEEEECCccCC-chhhhhHHHHHh
Confidence            99998665      8999999999997643 223367877753

Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho

>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma

Probab=99.52  E-value=8.9e-14  Score=132.50  Aligned_cols=102  Identities=26%  Similarity=0.358  Sum_probs=88.3

Q ss_pred             eEEEEEEEEecCCCCCCCCCCCCCCCcEEEEEECC-----EEEEeeeccCCCCceeccEEEEEEeCC--CceEEEEEEeC
Q 045058          596 GILELGILNAVGLHPMKTRDGRGTSDTYCVAKYGH-----KWVRTRTLVDNLSPKYNEQYTWEVFDP--ATVLTVGVFDN  668 (1005)
Q Consensus       596 g~l~v~i~~a~~L~~~~~~~~~~~~dpyv~~~~g~-----~~~~T~~~~~t~nP~wne~f~~~v~~~--~~~l~i~v~d~  668 (1005)
                      |.|+|+|++|++|+..   +..+.+||||++.+.+     ...+|+++.++.||.|||+|.|.+...  ...|.|+|||+
T Consensus        13 ~~l~v~i~~a~nL~~~---~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~wne~f~~~~~~~~~~~~l~v~v~d~   89 (131)
T cd04026          13 NKLTVEVREAKNLIPM---DPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFDLKPADKDRRLSIEVWDW   89 (131)
T ss_pred             CEEEEEEEEeeCCCCc---CCCCCCCCcEEEEEEcCCCCCceecceeecCCCCCCccceEEEeCCchhcCCEEEEEEEEC
Confidence            7899999999999964   3467899999999953     568999999999999999999998753  56899999999


Q ss_pred             CCcCCCCCCCCCcccEEEEEEcccccCCCEEeeeEeeee
Q 045058          669 SQLGEKSNGNKDLKIGKVRIRISTLETGRIYTHSYPLLV  707 (1005)
Q Consensus       669 ~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~  707 (1005)
                      +..+      ++++||.+.++|+++... ....||+|..
T Consensus        90 ~~~~------~~~~iG~~~~~l~~l~~~-~~~~w~~L~~  121 (131)
T cd04026          90 DRTT------RNDFMGSLSFGVSELIKM-PVDGWYKLLN  121 (131)
T ss_pred             CCCC------CcceeEEEEEeHHHhCcC-ccCceEECcC
Confidence            8665      789999999999999865 5578999973

A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd

>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase

Probab=99.52  E-value=2.1e-13  Score=128.15  Aligned_cols=118  Identities=22%  Similarity=0.280  Sum_probs=94.9

Q ss_pred             EEEEEEEEeecCCCCCCCCCCCcEEEEEECCe-eeeeeeecCCCCCeeeeEEEEeecCCCCcEEEEEEEeCC-CCCCcee
Q 045058          271 FLYVRVVKARELPAMDLTGSIDPFVEVKIGNY-KGITKHYEKNQNPQWHQVFAFSRDRMQASVLEVVIKDKD-LVKDDFV  348 (1005)
Q Consensus       271 ~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~~~-~~kT~~~~~~~nP~wne~f~f~~~~~~~~~l~v~V~d~~-~~~d~~l  348 (1005)
                      .|.|+|.+|+ |...+..+.+||||+++++++ .++|++++++.||.|||.|.|.+.+  ...|.|+|||++ .+.+++|
T Consensus         3 ~L~V~i~~a~-l~~~~~~~~~dPyv~v~~~~~~~~kT~v~~~t~~P~Wne~f~~~~~~--~~~l~~~V~d~~~~~~~~~i   79 (125)
T cd04021           3 QLQITVESAK-LKSNSKSFKPDPYVEVTVDGQPPKKTEVSKKTSNPKWNEHFTVLVTP--QSTLEFKVWSHHTLKADVLL   79 (125)
T ss_pred             eEEEEEEeeE-CCCCCcCCCCCeEEEEEECCcccEEeeeeCCCCCCccccEEEEEeCC--CCEEEEEEEeCCCCCCCcEE
Confidence            5889999998 555555788999999999987 7899999999999999999999864  468999999999 6789999


Q ss_pred             EEEEEEceecCCCCCCCCCCCCeEEEeecCCC--CccceEEEEEE
Q 045058          349 GIVRFDINEVPLRVPPDSPLAPEWYRLEDKKG--EKIKGELMLAV  391 (1005)
Q Consensus       349 G~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~--~~~~G~i~l~~  391 (1005)
                      |++.++|.++.............|++|..+..  ....|+|.+.+
T Consensus        80 G~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~  124 (125)
T cd04021          80 GEASLDLSDILKNHNGKLENVKLTLNLSSENKGSSVKVGELTVIL  124 (125)
T ss_pred             EEEEEEHHHhHhhcCCCccceEEEEEEEccCCCcceeeeeEEEEe
Confidence            99999999998653222222345899986652  23679988764

E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e

>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16

Probab=99.52  E-value=6.3e-14  Score=133.54  Aligned_cols=107  Identities=21%  Similarity=0.301  Sum_probs=87.7

Q ss_pred             CcEEEEEEEEeecCCCCCCCCCCCcEEEEEEC---C---eEeeccccCCCCCCceeeEEEEEeccCccccceEEEEEEEe
Q 045058            3 NLKLGVQVVGAHNLLPKDGKGSSSAFVELYFD---G---QRFRTTIKENDLNPVWNESFYFNISDASKLHYLTLEAYIYN   76 (1005)
Q Consensus         3 ~~~l~V~v~~a~~L~~~d~~g~~dpyv~v~~~---~---~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d   76 (1005)
                      .++|.|+|++|+||..++..|.+||||+|++.   +   .++||++++++.||+|||+|.|.+... .+....|.|.|||
T Consensus        14 ~~~L~V~VikarnL~~~~~~~~~dpyVkv~llp~~~~~~~~~kT~v~~~t~nPvfnEtF~f~i~~~-~l~~~~L~~~V~~   92 (138)
T cd08408          14 TGRLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSDGQEISKSKTSIRRGQPDPEFKETFVFQVALF-QLSEVTLMFSVYN   92 (138)
T ss_pred             CCeEEEEEEEecCCCccccCCCCCeeEEEEEEeCCCcceeeccceeecCCCCCcEeeeEEEECCHH-HhCccEEEEEEEE
Confidence            47899999999999999999999999999983   2   257999999999999999999998653 3666799999999


Q ss_pred             CCCCCCCCcccEEEEEeCCcccCCCCceeeeEecccC
Q 045058           77 NIGDTNSRSFLGKVCLTGNSFVPLSDSVVLHYPLEKR  113 (1005)
Q Consensus        77 ~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~  113 (1005)
                      .+. .+++++||++.+++.....  +....|+.+...
T Consensus        93 ~~~-~~~~~~iG~v~l~~~~~~~--~~~~hW~~~l~~  126 (138)
T cd08408          93 KRK-MKRKEMIGWFSLGLNSSGE--EEEEHWNEMKES  126 (138)
T ss_pred             CCC-CCCCcEEEEEEECCcCCCc--hHHHHHHHHHhC
Confidence            965 5689999999999765332  223468777543

Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle

>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin

Probab=99.52  E-value=6.6e-14  Score=131.39  Aligned_cols=90  Identities=27%  Similarity=0.421  Sum_probs=78.9

Q ss_pred             EEEEEEEEecCCCCCCCCCCCCCCCcEEEEEECCEE--EEeeeccCCCCceeccEEEEEEeCC-CceEEEEEEeCCCcCC
Q 045058          597 ILELGILNAVGLHPMKTRDGRGTSDTYCVAKYGHKW--VRTRTLVDNLSPKYNEQYTWEVFDP-ATVLTVGVFDNSQLGE  673 (1005)
Q Consensus       597 ~l~v~i~~a~~L~~~~~~~~~~~~dpyv~~~~g~~~--~~T~~~~~t~nP~wne~f~~~v~~~-~~~l~i~v~d~~~~~~  673 (1005)
                      .|+|.|++|+||++++   ..|.+||||++.+++..  .||+++++++||+|||.|.|++..+ ...|.|+|||++.++ 
T Consensus         1 ~lrV~Vi~a~~L~~~d---~~g~~DPYv~v~~~~~~~~~kT~~v~~t~nP~Wne~f~f~~~~~~~~~L~~~V~d~d~~~-   76 (124)
T cd04037           1 LVRVYVVRARNLQPKD---PNGKSDPYLKIKLGKKKINDRDNYIPNTLNPVFGKMFELEATLPGNSILKISVMDYDLLG-   76 (124)
T ss_pred             CEEEEEEECcCCCCCC---CCCCCCcEEEEEECCeeccceeeEEECCCCCccceEEEEEecCCCCCEEEEEEEECCCCC-
Confidence            3789999999999754   57899999999998875  4788899999999999999998765 678999999999776 


Q ss_pred             CCCCCCCcccEEEEEEcccccC
Q 045058          674 KSNGNKDLKIGKVRIRISTLET  695 (1005)
Q Consensus       674 ~~~~~~d~~lG~~~i~l~~l~~  695 (1005)
                           +|++||++.|+|.+...
T Consensus        77 -----~dd~iG~~~i~l~~~~~   93 (124)
T cd04037          77 -----SDDLIGETVIDLEDRFF   93 (124)
T ss_pred             -----CCceeEEEEEeeccccc
Confidence                 89999999999998664

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.52  E-value=7e-15  Score=153.84  Aligned_cols=106  Identities=25%  Similarity=0.387  Sum_probs=91.9

Q ss_pred             CcEEEEEEEEeecCCCCCCCCCCCcEEEEEEC-----CeEeeccccCCCCCCceeeEEEEEeccCccccceEEEEEEEeC
Q 045058            3 NLKLGVQVVGAHNLLPKDGKGSSSAFVELYFD-----GQRFRTTIKENDLNPVWNESFYFNISDASKLHYLTLEAYIYNN   77 (1005)
Q Consensus         3 ~~~l~V~v~~a~~L~~~d~~g~~dpyv~v~~~-----~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~   77 (1005)
                      ...|+|+|.+|+||.++|.+|.+||||.+.+-     ..+++|++++.++||+|||+|.|.+...+.  ...|.|+|||+
T Consensus       179 ~~~l~v~i~ea~NLiPMDpNGlSDPYvk~kliPD~~~~sKqKTkTik~~LNP~wNEtftf~Lkp~Dk--drRlsiEvWDW  256 (683)
T KOG0696|consen  179 RDVLTVTIKEAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIKATLNPVWNETFTFKLKPSDK--DRRLSIEVWDW  256 (683)
T ss_pred             CceEEEEehhhccccccCCCCCCCcceeEEeccCCcchhhhhhhhhhhhcCccccceeEEecccccc--cceeEEEEecc
Confidence            46799999999999999999999999999982     237899999999999999999999865443  46899999999


Q ss_pred             CCCCCCCcccEEEEEeCCcccCCCCceeeeEecccC
Q 045058           78 IGDTNSRSFLGKVCLTGNSFVPLSDSVVLHYPLEKR  113 (1005)
Q Consensus        78 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~  113 (1005)
                      |+. ++++|+|...+.+++|......  .||.|...
T Consensus       257 DrT-sRNDFMGslSFgisEl~K~p~~--GWyKlLsq  289 (683)
T KOG0696|consen  257 DRT-SRNDFMGSLSFGISELQKAPVD--GWYKLLSQ  289 (683)
T ss_pred             ccc-ccccccceecccHHHHhhcchh--hHHHHhhh
Confidence            765 5999999999999999876654  59998754

>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7

Probab=99.51  E-value=3e-14  Score=136.59  Aligned_cols=106  Identities=27%  Similarity=0.387  Sum_probs=86.6

Q ss_pred             CcEEEEEEEEeecCCCCCCCCCCCcEEEEEEC--C---eEeeccccCCCCCCceeeEEEEEeccCccccceEEEEEEEeC
Q 045058            3 NLKLGVQVVGAHNLLPKDGKGSSSAFVELYFD--G---QRFRTTIKENDLNPVWNESFYFNISDASKLHYLTLEAYIYNN   77 (1005)
Q Consensus         3 ~~~l~V~v~~a~~L~~~d~~g~~dpyv~v~~~--~---~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~   77 (1005)
                      .+.|.|+|++|+||..++..|.+||||+|++.  +   .+++|++++++.||+|||+|.|.+... .+....|.|+|||+
T Consensus        14 ~~~L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~~kT~v~~~t~~P~wne~F~f~i~~~-~~~~~~l~~~v~d~   92 (136)
T cd08405          14 ANRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFNESFIFNIPLE-RLRETTLIITVMDK   92 (136)
T ss_pred             CCeEEEEEEEeeCCCccccCCCCCceEEEEEEeCCCccccccCcceeCCCCCcccceEEEeCCHH-HhCCCEEEEEEEEC
Confidence            47899999999999999989999999999982  2   357999999999999999999997532 23346899999999


Q ss_pred             CCCCCCCcccEEEEEeCCcccCCCCceeeeEecccC
Q 045058           78 IGDTNSRSFLGKVCLTGNSFVPLSDSVVLHYPLEKR  113 (1005)
Q Consensus        78 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~  113 (1005)
                      +. .+++++||++.+++.+.   +.....|++|...
T Consensus        93 ~~-~~~~~~lG~~~i~~~~~---~~~~~~w~~~~~~  124 (136)
T cd08405          93 DR-LSRNDLIGKIYLGWKSG---GLELKHWKDMLSK  124 (136)
T ss_pred             CC-CCCCcEeEEEEECCccC---CchHHHHHHHHhC
Confidence            64 56899999999998875   3334568777544

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves

>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma

Probab=99.51  E-value=7.8e-14  Score=132.91  Aligned_cols=107  Identities=29%  Similarity=0.459  Sum_probs=90.7

Q ss_pred             CcEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eEeeccccCCCCCCceeeEEEEEeccCccccceEEEEEEEeC
Q 045058            3 NLKLGVQVVGAHNLLPKDGKGSSSAFVELYFDG-----QRFRTTIKENDLNPVWNESFYFNISDASKLHYLTLEAYIYNN   77 (1005)
Q Consensus         3 ~~~l~V~v~~a~~L~~~d~~g~~dpyv~v~~~~-----~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~   77 (1005)
                      .+.|.|+|++|+||+..+..+.+||||.|.+.+     .+++|++++++.||.|||+|.|.+...+  ....|.|.|||+
T Consensus        12 ~~~l~v~i~~a~nL~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~wne~f~~~~~~~~--~~~~l~v~v~d~   89 (131)
T cd04026          12 DNKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFDLKPAD--KDRRLSIEVWDW   89 (131)
T ss_pred             CCEEEEEEEEeeCCCCcCCCCCCCCcEEEEEEcCCCCCceecceeecCCCCCCccceEEEeCCchh--cCCEEEEEEEEC
Confidence            478999999999999988888999999999963     5799999999999999999999986543  235899999998


Q ss_pred             CCCCCCCcccEEEEEeCCcccCCCCceeeeEecccCC
Q 045058           78 IGDTNSRSFLGKVCLTGNSFVPLSDSVVLHYPLEKRG  114 (1005)
Q Consensus        78 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~  114 (1005)
                      +. .+++++||++.+++.++...  ....||+|.+..
T Consensus        90 ~~-~~~~~~iG~~~~~l~~l~~~--~~~~w~~L~~~~  123 (131)
T cd04026          90 DR-TTRNDFMGSLSFGVSELIKM--PVDGWYKLLNQE  123 (131)
T ss_pred             CC-CCCcceeEEEEEeHHHhCcC--ccCceEECcCcc
Confidence            54 45899999999999998754  335799997653

A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd

>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC)

Probab=99.51  E-value=2.2e-13  Score=129.49  Aligned_cols=117  Identities=25%  Similarity=0.408  Sum_probs=95.7

Q ss_pred             cEEEEEEEEeecCCCCC--CCCCCCcEEEEEEC------CeEeeccccCCCC-CCceeeEEEEEeccCccccceEEEEEE
Q 045058            4 LKLGVQVVGAHNLLPKD--GKGSSSAFVELYFD------GQRFRTTIKENDL-NPVWNESFYFNISDASKLHYLTLEAYI   74 (1005)
Q Consensus         4 ~~l~V~v~~a~~L~~~d--~~g~~dpyv~v~~~------~~~~~T~v~~~t~-nP~Wne~f~f~v~~~~~~~~~~l~v~V   74 (1005)
                      ..|+|+|++|+||+..+  ..+.+||||++++.      ..+.+|+++.++. ||+|||+|.|.+..++   ...|.|.|
T Consensus         2 ~~l~v~vi~a~~L~~~~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~~~~---~~~l~~~V   78 (128)
T cd00275           2 LTLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVPE---LAFLRFVV   78 (128)
T ss_pred             eEEEEEEEeeecCCCCCCCCCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEeCCC---eEEEEEEE
Confidence            47999999999999888  47889999999993      4578999877765 9999999999987544   25799999


Q ss_pred             EeCCCCCCCCcccEEEEEeCCcccCCCCceeeeEecccCCCcceeeeEEEEEEEE
Q 045058           75 YNNIGDTNSRSFLGKVCLTGNSFVPLSDSVVLHYPLEKRGIFSHVRGELGLKVYI  129 (1005)
Q Consensus        75 ~d~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~  129 (1005)
                      ||++. . ++++||++.+++.++...    ..|++|....+.....|.|.+++.+
T Consensus        79 ~d~~~-~-~~~~iG~~~~~l~~l~~g----~~~~~l~~~~~~~~~~~~l~v~~~~  127 (128)
T cd00275          79 YDEDS-G-DDDFLGQACLPLDSLRQG----YRHVPLLDSKGEPLELSTLFVHIDI  127 (128)
T ss_pred             EeCCC-C-CCcEeEEEEEEhHHhcCc----eEEEEecCCCCCCCcceeEEEEEEE
Confidence            99854 4 899999999999998432    3589998776554567999998865

PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking

>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin

Probab=99.51  E-value=9.5e-14  Score=130.33  Aligned_cols=89  Identities=28%  Similarity=0.478  Sum_probs=80.6

Q ss_pred             EEEEEEEeecCCCCCCCCCCCcEEEEEECCee--eeeeeecCCCCCeeeeEEEEeecCCCCcEEEEEEEeCC-CCCCcee
Q 045058          272 LYVRVVKARELPAMDLTGSIDPFVEVKIGNYK--GITKHYEKNQNPQWHQVFAFSRDRMQASVLEVVIKDKD-LVKDDFV  348 (1005)
Q Consensus       272 L~V~v~~a~~L~~~~~~g~~dPyv~v~~~~~~--~kT~~~~~~~nP~wne~f~f~~~~~~~~~l~v~V~d~~-~~~d~~l  348 (1005)
                      |+|+|++|++|+..+..|.+||||+++++++.  .+|++++++.||.|||+|.|.+.......|.|+|||++ .++|++|
T Consensus         2 lrV~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~~kT~~v~~t~nP~Wne~f~f~~~~~~~~~L~~~V~d~d~~~~dd~i   81 (124)
T cd04037           2 VRVYVVRARNLQPKDPNGKSDPYLKIKLGKKKINDRDNYIPNTLNPVFGKMFELEATLPGNSILKISVMDYDLLGSDDLI   81 (124)
T ss_pred             EEEEEEECcCCCCCCCCCCCCcEEEEEECCeeccceeeEEECCCCCccceEEEEEecCCCCCEEEEEEEECCCCCCCcee
Confidence            78999999999999999999999999999865  57888899999999999999987666679999999999 7789999


Q ss_pred             EEEEEEceecCC
Q 045058          349 GIVRFDINEVPL  360 (1005)
Q Consensus       349 G~~~i~l~~l~~  360 (1005)
                      |++.+++.+...
T Consensus        82 G~~~i~l~~~~~   93 (124)
T cd04037          82 GETVIDLEDRFF   93 (124)
T ss_pred             EEEEEeeccccc
Confidence            999999997764

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain

Probab=99.51  E-value=4.7e-14  Score=134.80  Aligned_cols=111  Identities=25%  Similarity=0.415  Sum_probs=90.1

Q ss_pred             eeeeccccceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeeeeeecCCCCCeeeeEEEEeecC--CCCcE
Q 045058          260 ASTYDLVERMYFLYVRVVKARELPAMDLTGSIDPFVEVKIGN-----YKGITKHYEKNQNPQWHQVFAFSRDR--MQASV  332 (1005)
Q Consensus       260 ~~~~~~~~~~~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~~-----~~~kT~~~~~~~nP~wne~f~f~~~~--~~~~~  332 (1005)
                      +..|+  ...+.|.|+|++|++|+..+..|.+||||++++.+     ..++|++++++.||.|||+|.|.+..  +....
T Consensus         5 ~l~y~--~~~~~L~V~Vi~a~~L~~~d~~~~~DpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~l~~~~   82 (133)
T cd08384           5 SLMYN--TQRRGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYDIKHSDLAKKT   82 (133)
T ss_pred             EEEEc--CCCCEEEEEEEEEcCCCCcCCCCCCCcEEEEEEEcCCCccCCceeeeEeccCCCCcccEEEEECCHHHhCCCE
Confidence            34444  34589999999999999999889999999999964     35689999999999999999999753  34568


Q ss_pred             EEEEEEeCC-CCCCceeEEEEEEceecCCCCCCCCCCCCeEEEeecCC
Q 045058          333 LEVVIKDKD-LVKDDFVGIVRFDINEVPLRVPPDSPLAPEWYRLEDKK  379 (1005)
Q Consensus       333 l~v~V~d~~-~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~  379 (1005)
                      |.|+|||++ .+++++||++.+++...  +     ....+|+++...+
T Consensus        83 l~~~V~d~d~~~~~~~lG~~~i~l~~~--~-----~~~~~W~~~l~~~  123 (133)
T cd08384          83 LEITVWDKDIGKSNDYIGGLQLGINAK--G-----ERLRHWLDCLKNP  123 (133)
T ss_pred             EEEEEEeCCCCCCccEEEEEEEecCCC--C-----chHHHHHHHHhCC
Confidence            999999999 67899999999999752  1     2346787775543

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai

>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins

Probab=99.50  E-value=1e-13  Score=132.05  Aligned_cols=95  Identities=29%  Similarity=0.407  Sum_probs=83.1

Q ss_pred             cceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-------eeeeeeeecCCCCCeeeeEEEEeecCC----CCcEEEE
Q 045058          267 ERMYFLYVRVVKARELPAMDLTGSIDPFVEVKIGN-------YKGITKHYEKNQNPQWHQVFAFSRDRM----QASVLEV  335 (1005)
Q Consensus       267 ~~~~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~~-------~~~kT~~~~~~~nP~wne~f~f~~~~~----~~~~l~v  335 (1005)
                      .....|.|+|++|++|+..+..+.+||||+|++.+       ..++|++++++.||+|||+|.|.+...    ....|.|
T Consensus        13 ~~~~~L~V~Vi~A~~L~~~~~~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~~~~~~~~l~~   92 (133)
T cd04009          13 ASEQSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEFNVPPEQCSVEGALLLF   92 (133)
T ss_pred             CCCCEEEEEEEEeeCCCCcCCCCCCCCEEEEEEECCCcCccccccccccCcCCCCCccCCEEEEEechhhcccCCCEEEE
Confidence            34578999999999999998889999999999963       357999999999999999999997642    3568999


Q ss_pred             EEEeCC-CCCCceeEEEEEEceecCCC
Q 045058          336 VIKDKD-LVKDDFVGIVRFDINEVPLR  361 (1005)
Q Consensus       336 ~V~d~~-~~~d~~lG~~~i~l~~l~~~  361 (1005)
                      +|||++ .+++++||++.++|.++...
T Consensus        93 ~V~d~d~~~~d~~iG~~~i~l~~l~~~  119 (133)
T cd04009          93 TVKDYDLLGSNDFEGEAFLPLNDIPGV  119 (133)
T ss_pred             EEEecCCCCCCcEeEEEEEeHHHCCcc
Confidence            999999 67799999999999999743

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s

>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10

Probab=99.50  E-value=5.9e-14  Score=134.15  Aligned_cols=107  Identities=20%  Similarity=0.311  Sum_probs=85.8

Q ss_pred             CCcEEEEEEEEeecCCCCCCCCCCCcEEEEEEC--C---eEeeccccCCCCCCceeeEEEEEeccCccccceEEEEEEEe
Q 045058            2 RNLKLGVQVVGAHNLLPKDGKGSSSAFVELYFD--G---QRFRTTIKENDLNPVWNESFYFNISDASKLHYLTLEAYIYN   76 (1005)
Q Consensus         2 ~~~~l~V~v~~a~~L~~~d~~g~~dpyv~v~~~--~---~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d   76 (1005)
                      ..+.|+|+|++|++|+.++..|.+||||+|++.  +   .+++|+++++++||+|||+|.|.+... .+....|.|+|||
T Consensus        12 ~~~~L~V~v~~A~~L~~~d~~g~~dpyvkv~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~-~~~~~~l~~~v~d   90 (134)
T cd08403          12 TAGRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEALVFDVPPE-NVDNVSLIIAVVD   90 (134)
T ss_pred             CCCEEEEEEEEeeCCCccccCCCCCceEEEEEEeCCcccceecCCcccCCCCCcccceEEEECCHH-HhCCCEEEEEEEE
Confidence            357899999999999999999999999999983  2   267999999999999999999998542 2444579999999


Q ss_pred             CCCCCCCCcccEEEEEeCCcccCCCCceeeeEecccC
Q 045058           77 NIGDTNSRSFLGKVCLTGNSFVPLSDSVVLHYPLEKR  113 (1005)
Q Consensus        77 ~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~  113 (1005)
                      ++. .+++++||++.+++...   +.....|+++...
T Consensus        91 ~~~-~~~~~~IG~~~l~~~~~---~~~~~~w~~~~~~  123 (134)
T cd08403          91 YDR-VGHNELIGVCRVGPNAD---GQGREHWNEMLAN  123 (134)
T ss_pred             CCC-CCCCceeEEEEECCCCC---CchHHHHHHHHHC
Confidence            954 56899999999997632   2333468777544

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind

>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1

Probab=99.50  E-value=2.3e-13  Score=130.50  Aligned_cols=104  Identities=28%  Similarity=0.367  Sum_probs=84.9

Q ss_pred             eEEEEEEEEEeeeCCCCCCCCCCCcEEEEEEC--C---eEEeeecccCCCCCcccccEEEEEeeCC--CCCeEEEEEEec
Q 045058          433 LWYVRVNVVEAQDLVPTEKNHFPDVYVKAQIG--N---QVLKTKICQARTLSAVWNEDLLFVAAEP--FEDHLVLTVEDR  505 (1005)
Q Consensus       433 ~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~lg--~---~~~kT~~~~~~t~~P~w~e~f~f~v~~~--~~~~l~i~V~d~  505 (1005)
                      .+.|.|.|++|++|+.++..+.+||||++.++  +   ..++|++++ ++.||.|||.|.|.+...  ....|.|+|||+
T Consensus        14 ~~~l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~-~t~nP~wne~f~f~i~~~~l~~~~l~~~v~d~   92 (136)
T cd08402          14 AGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKK-RTLNPYYNESFSFEVPFEQIQKVHLIVTVLDY   92 (136)
T ss_pred             CCeEEEEEEEeeCCCcccCCCCCCCeEEEEEEECCcccceeecccee-CCCCCcccceEEEECCHHHhCCCEEEEEEEeC
Confidence            34799999999999999999999999999994  2   356788886 999999999999998643  234799999999


Q ss_pred             cCCCCCceeEEEEEcccccccccccccccceeEEccCC
Q 045058          506 VGPGKDEIIGRVIIPLSAIEKRADERIIHSRWFNLEKP  543 (1005)
Q Consensus       506 d~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~w~~L~~~  543 (1005)
                      +.++++++||++.|++.....      ...+|+.+...
T Consensus        93 ~~~~~~~~iG~~~i~~~~~~~------~~~~W~~~~~~  124 (136)
T cd08402          93 DRIGKNDPIGKVVLGCNATGA------ELRHWSDMLAS  124 (136)
T ss_pred             CCCCCCceeEEEEECCccCCh------HHHHHHHHHhC
Confidence            999999999999999976421      24566665444

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:

>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4

Probab=99.50  E-value=1.1e-13  Score=132.67  Aligned_cols=103  Identities=25%  Similarity=0.335  Sum_probs=85.9

Q ss_pred             EEEEEEEEeeeCCCCCCCCCCCcEEEEEEC--C---eEEeeecccCCCCCcccccEEEEEeeCC--CCCeEEEEEEeccC
Q 045058          435 YVRVNVVEAQDLVPTEKNHFPDVYVKAQIG--N---QVLKTKICQARTLSAVWNEDLLFVAAEP--FEDHLVLTVEDRVG  507 (1005)
Q Consensus       435 ~L~V~v~~a~~L~~~d~~~~~dpyv~v~lg--~---~~~kT~~~~~~t~~P~w~e~f~f~v~~~--~~~~l~i~V~d~d~  507 (1005)
                      .|.|+|++|+||+..+..+.+||||++.+.  +   ...+|++++ ++.||.|||.|.|.+...  ....|.|+|||++.
T Consensus        16 ~L~V~vi~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~k-~t~nP~w~e~F~f~v~~~~~~~~~l~~~v~d~d~   94 (136)
T cd08404          16 RLTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKK-CTLNPVFNESFVFDIPSEELEDISVEFLVLDSDR   94 (136)
T ss_pred             eEEEEEEEeeCCCccccCCCCCeEEEEEEEcCCceeeeEcCcccc-CCCCCccCceEEEECCHHHhCCCEEEEEEEECCC
Confidence            799999999999999999999999999983  2   256788886 999999999999998643  34578899999999


Q ss_pred             CCCCceeEEEEEcccccccccccccccceeEEccCCC
Q 045058          508 PGKDEIIGRVIIPLSAIEKRADERIIHSRWFNLEKPV  544 (1005)
Q Consensus       508 ~~~d~~iG~~~i~l~~l~~~~~~~~~~~~w~~L~~~~  544 (1005)
                      .+++++||++.+++.. ...     ...+|+.|...+
T Consensus        95 ~~~~~~iG~~~~~~~~-~~~-----~~~~w~~l~~~~  125 (136)
T cd08404          95 VTKNEVIGRLVLGPKA-SGS-----GGHHWKEVCNPP  125 (136)
T ss_pred             CCCCccEEEEEECCcC-CCc-----hHHHHHHHHhCC
Confidence            9999999999999987 221     357788876543

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s

>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain

Probab=99.49  E-value=1.7e-13  Score=128.94  Aligned_cols=98  Identities=21%  Similarity=0.320  Sum_probs=82.3

Q ss_pred             CcEEEEEEEEeecCCCCCCCCCCCcEEEEEEC-----CeEeeccccCCCCCCceeeEEEEEeccCccccceEEEEEEEeC
Q 045058            3 NLKLGVQVVGAHNLLPKDGKGSSSAFVELYFD-----GQRFRTTIKENDLNPVWNESFYFNISDASKLHYLTLEAYIYNN   77 (1005)
Q Consensus         3 ~~~l~V~v~~a~~L~~~d~~g~~dpyv~v~~~-----~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~   77 (1005)
                      .+.|+|+|++|++|+..+..+.+||||++++.     ..+.+|++++++.||+|||+|.|............|.|+|||+
T Consensus        14 ~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~Wne~f~f~~~~~~~~~~~~l~~~v~d~   93 (123)
T cd04035          14 NSALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTYYGITEEDIQRKTLRLLVLDE   93 (123)
T ss_pred             CCEEEEEEEEeeCCCCCCCCCCCCceEEEEEecCCCCCCceeeeeecCCCCCCccceEEEcCCCHHHhCCCEEEEEEEEc
Confidence            47899999999999998888999999999983     2478999999999999999999974333334446899999998


Q ss_pred             CCCCCCCcccEEEEEeCCcccCCCC
Q 045058           78 IGDTNSRSFLGKVCLTGNSFVPLSD  102 (1005)
Q Consensus        78 ~~~~~~d~~lG~~~i~l~~l~~~~~  102 (1005)
                      +. . ++++||++.++++++.....
T Consensus        94 ~~-~-~~~~iG~~~i~l~~l~~~~~  116 (123)
T cd04035          94 DR-F-GNDFLGETRIPLKKLKPNQT  116 (123)
T ss_pred             CC-c-CCeeEEEEEEEcccCCCCcc
Confidence            54 4 89999999999999876554

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain

>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17

Probab=99.49  E-value=1.9e-13  Score=130.39  Aligned_cols=105  Identities=23%  Similarity=0.340  Sum_probs=84.2

Q ss_pred             EEEEEEEEEeeeCCCCCCCCCCCcEEEEEE--CC---eEEeeecccCCCCCcccccEEEEEeeCC--CCCeEEEEEEecc
Q 045058          434 WYVRVNVVEAQDLVPTEKNHFPDVYVKAQI--GN---QVLKTKICQARTLSAVWNEDLLFVAAEP--FEDHLVLTVEDRV  506 (1005)
Q Consensus       434 ~~L~V~v~~a~~L~~~d~~~~~dpyv~v~l--g~---~~~kT~~~~~~t~~P~w~e~f~f~v~~~--~~~~l~i~V~d~d  506 (1005)
                      +.|.|+|++|+||+..+..+.+||||++.+  +.   ...+|++++ ++.||.|||.|.|.+...  .+..|.|+|||++
T Consensus        14 ~~L~V~vi~a~~L~~~d~~g~~DPyV~v~l~~~~~~~~~~kT~v~~-~t~nP~wnE~F~f~i~~~~l~~~~l~~~V~d~d   92 (135)
T cd08410          14 GRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKTSCMR-GTIDPFYNESFSFKVPQEELENVSLVFTVYGHN   92 (135)
T ss_pred             CeEEEEEEEecCCCcccCCCCCCeEEEEEEEcCCcccceEcCcccc-CCCCCccceeEEEeCCHHHhCCCEEEEEEEeCC
Confidence            479999999999999998899999999998  32   357888886 899999999999998543  3447999999999


Q ss_pred             CCCCCceeEEEEEcccccccccccccccceeEEccCCC
Q 045058          507 GPGKDEIIGRVIIPLSAIEKRADERIIHSRWFNLEKPV  544 (1005)
Q Consensus       507 ~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~w~~L~~~~  544 (1005)
                      ..+++++||++.|+.......     ...+|+.|....
T Consensus        93 ~~~~~~~iG~~~l~~~~~~~~-----~~~~W~~l~~~~  125 (135)
T cd08410          93 VKSSNDFIGRIVIGQYSSGPS-----ETNHWRRMLNSQ  125 (135)
T ss_pred             CCCCCcEEEEEEEcCccCCch-----HHHHHHHHHhCC
Confidence            999999999999876443321     135666665543

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-

>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15

Probab=99.49  E-value=5e-14  Score=134.54  Aligned_cols=106  Identities=21%  Similarity=0.284  Sum_probs=85.9

Q ss_pred             CcEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eEeeccccCCCCCCceeeEEEEEeccCccccceEEEEEEEeC
Q 045058            3 NLKLGVQVVGAHNLLPKDGKGSSSAFVELYFDG-----QRFRTTIKENDLNPVWNESFYFNISDASKLHYLTLEAYIYNN   77 (1005)
Q Consensus         3 ~~~l~V~v~~a~~L~~~d~~g~~dpyv~v~~~~-----~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~   77 (1005)
                      .++|.|+|++|+||...+ .+.+||||+|++..     .+++|++++++.||+|||+|.|.+... .+....|.|+|||+
T Consensus        14 ~~~L~V~V~~a~nL~~~~-~~~~d~yVkv~l~~~~~~~~~~kT~v~~~~~nP~fnE~F~f~i~~~-~l~~~~L~~~V~~~   91 (137)
T cd08409          14 LNRLTVVVLRARGLRQLD-HAHTSVYVKVSLMIHNKVVKTKKTEVVDGAASPSFNESFSFKVTSR-QLDTASLSLSVMQS   91 (137)
T ss_pred             CCeEEEEEEEecCCCccc-CCCCCeEEEEEEEECCEEeeeeecccEeCCCCCcccceEEEECCHH-HhCccEEEEEEEeC
Confidence            478999999999999988 78899999999743     367999999999999999999998643 35667899999999


Q ss_pred             CCCCCCCcccEEEEEeCCcccCCCCceeeeEeccc
Q 045058           78 IGDTNSRSFLGKVCLTGNSFVPLSDSVVLHYPLEK  112 (1005)
Q Consensus        78 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~  112 (1005)
                      +. .+++++||++.|+......+ +..+.|..+..
T Consensus        92 ~~-~~~~~~lG~v~ig~~~~~~~-~~~~hW~~~~~  124 (137)
T cd08409          92 GG-VRKSKLLGRVVLGPFMYARG-KELEHWNDMLS  124 (137)
T ss_pred             CC-CCCcceEEEEEECCcccCCC-hHHHHHHHHHh
Confidence            64 56899999999996554333 33456877654

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id

>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7

Probab=99.49  E-value=3e-13  Score=129.64  Aligned_cols=90  Identities=29%  Similarity=0.433  Sum_probs=78.6

Q ss_pred             EEEEEEEEEeeeCCCCCCCCCCCcEEEEEE--CC---eEEeeecccCCCCCcccccEEEEEeeCC--CCCeEEEEEEecc
Q 045058          434 WYVRVNVVEAQDLVPTEKNHFPDVYVKAQI--GN---QVLKTKICQARTLSAVWNEDLLFVAAEP--FEDHLVLTVEDRV  506 (1005)
Q Consensus       434 ~~L~V~v~~a~~L~~~d~~~~~dpyv~v~l--g~---~~~kT~~~~~~t~~P~w~e~f~f~v~~~--~~~~l~i~V~d~d  506 (1005)
                      +.|.|+|++|+||+..+..+.+||||++.+  ++   ..++|++++ ++.||.|||.|.|.+...  .+..|.|+|||++
T Consensus        15 ~~L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~~kT~v~~-~t~~P~wne~F~f~i~~~~~~~~~l~~~v~d~~   93 (136)
T cd08405          15 NRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKK-RTLNPVFNESFIFNIPLERLRETTLIITVMDKD   93 (136)
T ss_pred             CeEEEEEEEeeCCCccccCCCCCceEEEEEEeCCCccccccCccee-CCCCCcccceEEEeCCHHHhCCCEEEEEEEECC
Confidence            379999999999999888899999999998  32   357899986 999999999999997532  3568999999999


Q ss_pred             CCCCCceeEEEEEccccc
Q 045058          507 GPGKDEIIGRVIIPLSAI  524 (1005)
Q Consensus       507 ~~~~d~~iG~~~i~l~~l  524 (1005)
                      ..+++++||++.+++.+.
T Consensus        94 ~~~~~~~lG~~~i~~~~~  111 (136)
T cd08405          94 RLSRNDLIGKIYLGWKSG  111 (136)
T ss_pred             CCCCCcEeEEEEECCccC
Confidence            999999999999999875

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves

>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15

Probab=99.49  E-value=3.4e-13  Score=128.82  Aligned_cols=88  Identities=25%  Similarity=0.324  Sum_probs=76.0

Q ss_pred             EEEEEEEEeeeCCCCCCCCCCCcEEEEEECC-----eEEeeecccCCCCCcccccEEEEEeeCC--CCCeEEEEEEeccC
Q 045058          435 YVRVNVVEAQDLVPTEKNHFPDVYVKAQIGN-----QVLKTKICQARTLSAVWNEDLLFVAAEP--FEDHLVLTVEDRVG  507 (1005)
Q Consensus       435 ~L~V~v~~a~~L~~~d~~~~~dpyv~v~lg~-----~~~kT~~~~~~t~~P~w~e~f~f~v~~~--~~~~l~i~V~d~d~  507 (1005)
                      .|.|.|++|+||+..+ .+.+||||++.+..     .+++|++++ ++.||.|||.|.|.+...  ....|.|.|||++.
T Consensus        16 ~L~V~V~~a~nL~~~~-~~~~d~yVkv~l~~~~~~~~~~kT~v~~-~~~nP~fnE~F~f~i~~~~l~~~~L~~~V~~~~~   93 (137)
T cd08409          16 RLTVVVLRARGLRQLD-HAHTSVYVKVSLMIHNKVVKTKKTEVVD-GAASPSFNESFSFKVTSRQLDTASLSLSVMQSGG   93 (137)
T ss_pred             eEEEEEEEecCCCccc-CCCCCeEEEEEEEECCEEeeeeecccEe-CCCCCcccceEEEECCHHHhCccEEEEEEEeCCC
Confidence            7999999999999988 77899999999832     366888886 999999999999998643  44689999999999


Q ss_pred             CCCCceeEEEEEccccc
Q 045058          508 PGKDEIIGRVIIPLSAI  524 (1005)
Q Consensus       508 ~~~d~~iG~~~i~l~~l  524 (1005)
                      .+++++||++.|+....
T Consensus        94 ~~~~~~lG~v~ig~~~~  110 (137)
T cd08409          94 VRKSKLLGRVVLGPFMY  110 (137)
T ss_pred             CCCcceEEEEEECCccc
Confidence            99999999999986543

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id

>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin

Probab=99.48  E-value=9.9e-14  Score=133.08  Aligned_cols=108  Identities=27%  Similarity=0.413  Sum_probs=90.2

Q ss_pred             CCcEEEEEEEEeecCCCCCCCCCCCcEEEEEECCe-----EeeccccCCCCCCceeeEEEEEeccCccccceEEEEEEEe
Q 045058            2 RNLKLGVQVVGAHNLLPKDGKGSSSAFVELYFDGQ-----RFRTTIKENDLNPVWNESFYFNISDASKLHYLTLEAYIYN   76 (1005)
Q Consensus         2 ~~~~l~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~-----~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d   76 (1005)
                      ..+.|.|+|++|+||+..+..+.+||||++++.+.     +++|+++.++.||.|||+|.|.+.... +....|.|+|||
T Consensus        12 ~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~~~~P~wne~f~f~i~~~~-l~~~~l~~~v~d   90 (134)
T cd00276          12 TAERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFDVPAEQ-LEEVSLVITVVD   90 (134)
T ss_pred             CCCEEEEEEEEeeCCCCccCCCCCCcEEEEEEEcCCeEeeeecCcceecCCCCeeeeeEEEECCHHH-hCCcEEEEEEEe
Confidence            35789999999999999988889999999998542     679999999999999999999986532 334689999999


Q ss_pred             CCCCCCCCcccEEEEEeCCcccCCCCceeeeEecccCC
Q 045058           77 NIGDTNSRSFLGKVCLTGNSFVPLSDSVVLHYPLEKRG  114 (1005)
Q Consensus        77 ~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~  114 (1005)
                      ++. .+++++||++.+++.+   .+...+.|++|....
T Consensus        91 ~~~-~~~~~~lG~~~i~l~~---~~~~~~~W~~l~~~~  124 (134)
T cd00276          91 KDS-VGRNEVIGQVVLGPDS---GGEELEHWNEMLASP  124 (134)
T ss_pred             cCC-CCCCceeEEEEECCCC---CCcHHHHHHHHHhCC
Confidence            864 3589999999999998   344456799998664

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin

>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.48  E-value=1.6e-14  Score=147.33  Aligned_cols=223  Identities=18%  Similarity=0.263  Sum_probs=167.8

Q ss_pred             cceeeeccccceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeeeeeecCCCCCeeeeEEEEe--ec-CCC
Q 045058          258 KTASTYDLVERMYFLYVRVVKARELPAMDLTGSIDPFVEVKIGN-----YKGITKHYEKNQNPQWHQVFAFS--RD-RMQ  329 (1005)
Q Consensus       258 ~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~~-----~~~kT~~~~~~~nP~wne~f~f~--~~-~~~  329 (1005)
                      .+...|+..  ...+..++..|++|.+++.++..|||++..++.     .+.+|++..++.||.|+|+-...  .. +..
T Consensus        83 ~~~~~y~~~--~~~~~~tl~~a~~lk~~~~~~~~d~~~~~~llpga~kl~slr~~t~~n~lN~~w~etev~~~i~~~~~~  160 (362)
T KOG1013|consen   83 EFELLYDSE--SRMLDTTLDRAKGLKPMDINGLADPYVKLHLLPGAGKLNSLRTKTTRNTLNPEWNETEVYEGITDDDTH  160 (362)
T ss_pred             hhhhhhhhh--hhhcceeechhcccchhhhhhhcchHHhhhcccchhhhhhhhHHhhccCcCcceeccceecccccchhh
Confidence            444555543  467899999999999999999999999999986     34678889999999999876654  22 223


Q ss_pred             CcEEEEEEEeCC-CCCCceeEEEEEEceecCCCCCCCCCCCCeEEEeecCCCC------ccceEEEEEEEEeccCCcccc
Q 045058          330 ASVLEVVIKDKD-LVKDDFVGIVRFDINEVPLRVPPDSPLAPEWYRLEDKKGE------KIKGELMLAVWIGTQADEAFS  402 (1005)
Q Consensus       330 ~~~l~v~V~d~~-~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~------~~~G~i~l~~~~~~~~d~~~~  402 (1005)
                      ...+.+.|.|.+ +..++++|+..+++..+...+-   .....|+.-..+.+.      +.+|.|.+++.|..       
T Consensus       161 ~K~~Rk~vcdn~~~~~~~sqGq~r~~lkKl~p~q~---k~f~~cl~~~lp~~rad~~~~E~rg~i~isl~~~s-------  230 (362)
T KOG1013|consen  161 LKVLRKVVCDNDKKTHNESQGQSRVSLKKLKPLQR---KSFNICLEKSLPSERADRDEDEERGAILISLAYSS-------  230 (362)
T ss_pred             hhhhheeeccCcccccccCcccchhhhhccChhhc---chhhhhhhccCCcccccccchhhccceeeeeccCc-------
Confidence            456778888888 7889999999999888865432   223334433332111      24566666664322       


Q ss_pred             cccCCCCCCCCCCCCccccccccccccCCceEEEEEEEEEeeeCCCCCCCCCCCcEEEEEECC-----eEEeeecccCCC
Q 045058          403 DAWHSDAATPVDSTPAITAVIRSKVYHSPRLWYVRVNVVEAQDLVPTEKNHFPDVYVKAQIGN-----QVLKTKICQART  477 (1005)
Q Consensus       403 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~lg~-----~~~kT~~~~~~t  477 (1005)
                                                   ...-+.|.+++|.+|..+|.++.+||||+.++..     .+.+|++.+ ++
T Consensus       231 -----------------------------~~~~l~vt~iRc~~l~ssDsng~sDpyvS~~l~pdv~~~fkkKt~~~K-~t  280 (362)
T KOG1013|consen  231 -----------------------------TTPGLIVTIIRCSHLASSDSNGYSDPYVSQRLSPDVGKKFKKKTQQKK-KT  280 (362)
T ss_pred             -----------------------------CCCceEEEEEEeeeeeccccCCCCCccceeecCCCcchhhcccCcchh-cc
Confidence                                         2225789999999999999999999999999932     466788876 99


Q ss_pred             CCcccccEEEEEeeCC--CCCeEEEEEEeccCCCCCceeEEEEEccc
Q 045058          478 LSAVWNEDLLFVAAEP--FEDHLVLTVEDRVGPGKDEIIGRVIIPLS  522 (1005)
Q Consensus       478 ~~P~w~e~f~f~v~~~--~~~~l~i~V~d~d~~~~d~~iG~~~i~l~  522 (1005)
                      .+|.|++.|.|.+...  ....+.|.|||++..+..+++|-+...+.
T Consensus       281 ~~p~fd~~~~~~i~pgdLa~~kv~lsvgd~~~G~s~d~~GG~~~g~~  327 (362)
T KOG1013|consen  281 LNPEFDEEFFYDIGPGDLAYKKVALSVGDYDIGKSNDSIGGSMLGGY  327 (362)
T ss_pred             CCccccccccccCCccchhcceEEEeecccCCCcCccCCCccccccc
Confidence            9999999999988544  34579999999998888999998776654

>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins

Probab=99.48  E-value=2.5e-13  Score=124.88  Aligned_cols=101  Identities=22%  Similarity=0.399  Sum_probs=85.8

Q ss_pred             CCCCCCcEEEEEECCe-eeeeeeecCCCCCeeeeEEEEeecCCCCcEEEEEEEeCCCCCCceeEEEEEEceecCCCCCCC
Q 045058          287 LTGSIDPFVEVKIGNY-KGITKHYEKNQNPQWHQVFAFSRDRMQASVLEVVIKDKDLVKDDFVGIVRFDINEVPLRVPPD  365 (1005)
Q Consensus       287 ~~g~~dPyv~v~~~~~-~~kT~~~~~~~nP~wne~f~f~~~~~~~~~l~v~V~d~~~~~d~~lG~~~i~l~~l~~~~~~~  365 (1005)
                      .+|.+||||+++++++ ..+|++++++.||.|||.|.|.+.+.....|.|.|+|++..++++||++.++|.++...    
T Consensus         9 ~~G~~dPYv~v~v~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~~d~~iG~~~v~L~~l~~~----   84 (111)
T cd04052           9 KTGLLSPYAELYLNGKLVYTTRVKKKTNNPSWNASTEFLVTDRRKSRVTVVVKDDRDRHDPVLGSVSISLNDLIDA----   84 (111)
T ss_pred             cCCCCCceEEEEECCEEEEEEeeeccCCCCccCCceEEEecCcCCCEEEEEEEECCCCCCCeEEEEEecHHHHHhh----
Confidence            5788999999999885 47999999999999999999999877678899999999933899999999999998643    


Q ss_pred             CCCCCeEEEeecCCCCccceEEEEEEEEec
Q 045058          366 SPLAPEWYRLEDKKGEKIKGELMLAVWIGT  395 (1005)
Q Consensus       366 ~~~~~~w~~L~~~~~~~~~G~i~l~~~~~~  395 (1005)
                      ......|++|.+.    ..|+|++++.|.|
T Consensus        85 ~~~~~~w~~L~~~----~~G~i~~~~~~~p  110 (111)
T cd04052          85 TSVGQQWFPLSGN----GQGRIRISALWKP  110 (111)
T ss_pred             hhccceeEECCCC----CCCEEEEEEEEec
Confidence            1346799999862    2499999998875

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=99.48  E-value=8.8e-14  Score=176.72  Aligned_cols=118  Identities=24%  Similarity=0.424  Sum_probs=101.6

Q ss_pred             CcceEEEEEEEEecCCCCCCCCCCCCCCCcEEEEEECCE-EEEeeeccCCCCceeccEEEEEEeCCC--ceEEEEEEeCC
Q 045058          593 PSIGILELGILNAVGLHPMKTRDGRGTSDTYCVAKYGHK-WVRTRTLVDNLSPKYNEQYTWEVFDPA--TVLTVGVFDNS  669 (1005)
Q Consensus       593 ~~~g~l~v~i~~a~~L~~~~~~~~~~~~dpyv~~~~g~~-~~~T~~~~~t~nP~wne~f~~~v~~~~--~~l~i~v~d~~  669 (1005)
                      .-.|.|.|+|++|+||. .    ..|.+||||++.+|+. ..||++++++.||+|||.|+|.+.+|.  ..|+|+|||+|
T Consensus      1977 ~~~G~L~V~V~~a~nl~-~----~~~~sdPyv~l~~g~~~~~kTkvvk~~~nP~Wne~f~~~~~~p~~~~~l~iev~d~d 2051 (2102)
T PLN03200       1977 CLPGSLTVTIKRGNNLK-Q----SMGNTNAFCKLTLGNGPPRQTKVVSHSSSPEWKEGFTWAFDSPPKGQKLHISCKSKN 2051 (2102)
T ss_pred             hCCcceEEEEeeccccc-c----ccCCCCCeEEEEECCCCcccccccCCCCCCCcccceeeeecCCCCCCceEEEEEecC
Confidence            34799999999999997 1    2688999999999965 789999999999999999999998865  78999999999


Q ss_pred             CcCCCCCCCCCcccEEEEEEcccccCCCEEeeeEeeeecCCCCCceeeE---EEEEEEEe
Q 045058          670 QLGEKSNGNKDLKIGKVRIRISTLETGRIYTHSYPLLVLHPTGVKKMGE---LHLAIRFS  726 (1005)
Q Consensus       670 ~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~G~---i~l~~~~~  726 (1005)
                      .++       ++.||++.|+|.++..++.+..||+|...    .++.|+   |+++++++
T Consensus      2052 ~f~-------kd~~G~~~i~l~~vv~~~~~~~~~~L~~~----~~k~G~~~~~~~e~~w~ 2100 (2102)
T PLN03200       2052 TFG-------KSSLGKVTIQIDRVVMEGTYSGEYSLNPE----SNKDGSSRTLEIEFQWS 2100 (2102)
T ss_pred             ccC-------CCCCceEEEEHHHHhcCceeeeeeecCcc----cccCCCcceEEEEEEec
Confidence            775       45999999999999999999999999721    234577   88888764

>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein

Probab=99.48  E-value=1.9e-13  Score=122.97  Aligned_cols=81  Identities=22%  Similarity=0.382  Sum_probs=68.2

Q ss_pred             EEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eEeeccccCCCCCCceeeEEEEEeccCccccceEEEEEEEeCC--
Q 045058            6 LGVQVVGAHNLLPKDGKGSSSAFVELYFDG-----QRFRTTIKENDLNPVWNESFYFNISDASKLHYLTLEAYIYNNI--   78 (1005)
Q Consensus         6 l~V~v~~a~~L~~~d~~g~~dpyv~v~~~~-----~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~--   78 (1005)
                      |.|+|++|+||+     |.+||||++.++.     .++||+++++|+||+|||+|.|.+..     ...|.+.|||+.  
T Consensus         1 L~V~V~~A~~L~-----~~sDPYV~l~v~~~~~~~~~~KTk~i~~TlnPvWnE~F~i~l~~-----s~~L~~~v~d~~~~   70 (118)
T cd08686           1 LNVIVHSAQGFK-----QSANLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNEEFEIELEG-----SQTLRILCYEKCYS   70 (118)
T ss_pred             CEEEEEeCCCCC-----CCCCCEEEEEEcCccccceeeeeeeecCCCCCccceEEEEEeCC-----CCEEEEEEEEcccc
Confidence            689999999996     4699999999963     36999999999999999999999964     248999999973  


Q ss_pred             ----CCCCCCcccEEEEEeCCc
Q 045058           79 ----GDTNSRSFLGKVCLTGNS   96 (1005)
Q Consensus        79 ----~~~~~d~~lG~~~i~l~~   96 (1005)
                          +..+.|++||.+.+.|.-
T Consensus        71 ~~~~d~~~~d~~~G~g~i~Ld~   92 (118)
T cd08686          71 KVKLDGEGTDAIMGKGQIQLDP   92 (118)
T ss_pred             cccccccCcccEEEEEEEEECH
Confidence                234689999998888644

The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr

>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.47  E-value=2.8e-14  Score=145.54  Aligned_cols=222  Identities=21%  Similarity=0.297  Sum_probs=157.9

Q ss_pred             CcEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eEeeccccCCCCCCceeeEEEEEeccCccccceEEEEEEEeC
Q 045058            3 NLKLGVQVVGAHNLLPKDGKGSSSAFVELYFDG-----QRFRTTIKENDLNPVWNESFYFNISDASKLHYLTLEAYIYNN   77 (1005)
Q Consensus         3 ~~~l~V~v~~a~~L~~~d~~g~~dpyv~v~~~~-----~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~   77 (1005)
                      +.++..++..|++|.+++.+|..|||+...+.-     .+.+|++..+++||.|||+-.......+......+.+.|.|.
T Consensus        92 ~~~~~~tl~~a~~lk~~~~~~~~d~~~~~~llpga~kl~slr~~t~~n~lN~~w~etev~~~i~~~~~~~K~~Rk~vcdn  171 (362)
T KOG1013|consen   92 SRMLDTTLDRAKGLKPMDINGLADPYVKLHLLPGAGKLNSLRTKTTRNTLNPEWNETEVYEGITDDDTHLKVLRKVVCDN  171 (362)
T ss_pred             hhhcceeechhcccchhhhhhhcchHHhhhcccchhhhhhhhHHhhccCcCcceeccceecccccchhhhhhhheeeccC
Confidence            467899999999999999999999999998742     368999999999999999988875444555666788888888


Q ss_pred             CCCCCCCcccEEEEEeCCcccCCCCc-eeeeEecccCCCcceeeeEEEEEEEEecCCCCCCCCCCCCCCCCCCCCCCCCC
Q 045058           78 IGDTNSRSFLGKVCLTGNSFVPLSDS-VVLHYPLEKRGIFSHVRGELGLKVYITDDPSIKSSTPLPAAETFSTKDPSITH  156 (1005)
Q Consensus        78 ~~~~~~d~~lG~~~i~l~~l~~~~~~-~~~w~~L~~~~~~~~~~G~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (1005)
                      ++ ...++++|+..+++..+.+.... ...|+.-.-+                 .         ..++.           
T Consensus       172 ~~-~~~~~sqGq~r~~lkKl~p~q~k~f~~cl~~~lp-----------------~---------~rad~-----------  213 (362)
T KOG1013|consen  172 DK-KTHNESQGQSRVSLKKLKPLQRKSFNICLEKSLP-----------------S---------ERADR-----------  213 (362)
T ss_pred             cc-cccccCcccchhhhhccChhhcchhhhhhhccCC-----------------c---------ccccc-----------
Confidence            54 45889999999887766543211 0011110000                 0         00000           


Q ss_pred             CCCCCCCCCCCCCcccccccccCCCCCCCCCCCCCCCCCcccccCCCCccccccccCCCCCCcceeecccCCCCCCCCcc
Q 045058          157 THAQPVANPVTGDTVESRHTFHHLPNPNHHQHHHQHHPSTTVVNRHVPKYEADEMKSEPQPPKLVHMYSAASSQSADYAL  236 (1005)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (1005)
                                              +                            +  -+++                    
T Consensus       214 ------------------------~----------------------------~--~E~r--------------------  219 (362)
T KOG1013|consen  214 ------------------------D----------------------------E--DEER--------------------  219 (362)
T ss_pred             ------------------------c----------------------------c--hhhc--------------------
Confidence                                    0                            0  0000                    


Q ss_pred             cccCCCCCCCcccCceeeccccceeeeccccceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeeeeeecC
Q 045058          237 KETSPYLGGGKVVGGRVIHADKTASTYDLVERMYFLYVRVVKARELPAMDLTGSIDPFVEVKIGN-----YKGITKHYEK  311 (1005)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~~-----~~~kT~~~~~  311 (1005)
                                    |    +..++..|.  .....+.|++++|..|..+|.+|.+||||..++..     .+.||.+.++
T Consensus       220 --------------g----~i~isl~~~--s~~~~l~vt~iRc~~l~ssDsng~sDpyvS~~l~pdv~~~fkkKt~~~K~  279 (362)
T KOG1013|consen  220 --------------G----AILISLAYS--STTPGLIVTIIRCSHLASSDSNGYSDPYVSQRLSPDVGKKFKKKTQQKKK  279 (362)
T ss_pred             --------------c----ceeeeeccC--cCCCceEEEEEEeeeeeccccCCCCCccceeecCCCcchhhcccCcchhc
Confidence                          0    001111221  22256889999999999999999999999999875     3468999999


Q ss_pred             CCCCeeeeEEEEeec--CCCCcEEEEEEEeCCCC-CCceeEEEEEEce
Q 045058          312 NQNPQWHQVFAFSRD--RMQASVLEVVIKDKDLV-KDDFVGIVRFDIN  356 (1005)
Q Consensus       312 ~~nP~wne~f~f~~~--~~~~~~l~v~V~d~~~~-~d~~lG~~~i~l~  356 (1005)
                      +.||.||+.|.|.+.  ++....+.|.|||++.+ ..+++|-+...+.
T Consensus       280 t~~p~fd~~~~~~i~pgdLa~~kv~lsvgd~~~G~s~d~~GG~~~g~~  327 (362)
T KOG1013|consen  280 TLNPEFDEEFFYDIGPGDLAYKKVALSVGDYDIGKSNDSIGGSMLGGY  327 (362)
T ss_pred             cCCccccccccccCCccchhcceEEEeecccCCCcCccCCCccccccc
Confidence            999999999999864  55667899999999954 7899988776654

>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin

Probab=99.47  E-value=9.3e-14  Score=133.25  Aligned_cols=106  Identities=25%  Similarity=0.399  Sum_probs=89.2

Q ss_pred             CcceEEEEEEEEecCCCCCCCCCCCCCCCcEEEEEECCE-----EEEeeeccCCCCceeccEEEEEEeCC---CceEEEE
Q 045058          593 PSIGILELGILNAVGLHPMKTRDGRGTSDTYCVAKYGHK-----WVRTRTLVDNLSPKYNEQYTWEVFDP---ATVLTVG  664 (1005)
Q Consensus       593 ~~~g~l~v~i~~a~~L~~~~~~~~~~~~dpyv~~~~g~~-----~~~T~~~~~t~nP~wne~f~~~v~~~---~~~l~i~  664 (1005)
                      +..+.|.|.|++|+||+..+   ..+.+||||++.+.+.     ..+|+++.++.||.|||+|.|.+...   ...|.|+
T Consensus        11 ~~~~~L~V~v~~a~~L~~~~---~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~~~~P~wne~f~f~i~~~~l~~~~l~~~   87 (134)
T cd00276          11 PTAERLTVVVLKARNLPPSD---GKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFDVPAEQLEEVSLVIT   87 (134)
T ss_pred             CCCCEEEEEEEEeeCCCCcc---CCCCCCcEEEEEEEcCCeEeeeecCcceecCCCCeeeeeEEEECCHHHhCCcEEEEE
Confidence            34589999999999999653   4678999999998432     46999999999999999999998764   5789999


Q ss_pred             EEeCCCcCCCCCCCCCcccEEEEEEcccccCCCEEeeeEeeeecC
Q 045058          665 VFDNSQLGEKSNGNKDLKIGKVRIRISTLETGRIYTHSYPLLVLH  709 (1005)
Q Consensus       665 v~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~  709 (1005)
                      |||.+..+      ++++||.+.|+|++  .+...++||+|....
T Consensus        88 v~d~~~~~------~~~~lG~~~i~l~~--~~~~~~~W~~l~~~~  124 (134)
T cd00276          88 VVDKDSVG------RNEVIGQVVLGPDS--GGEELEHWNEMLASP  124 (134)
T ss_pred             EEecCCCC------CCceeEEEEECCCC--CCcHHHHHHHHHhCC
Confidence            99998655      88999999999999  555668999997544

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin

>cd04048 C2A_Copine C2 domain first repeat in Copine

Probab=99.47  E-value=2.7e-13  Score=126.91  Aligned_cols=100  Identities=27%  Similarity=0.333  Sum_probs=82.7

Q ss_pred             EEEEeecCCCCCCCCCCCcEEEEEECCe-------EeeccccCCCCCCceeeEEEEEeccCccccceEEEEEEEeCCC--
Q 045058            9 QVVGAHNLLPKDGKGSSSAFVELYFDGQ-------RFRTTIKENDLNPVWNESFYFNISDASKLHYLTLEAYIYNNIG--   79 (1005)
Q Consensus         9 ~v~~a~~L~~~d~~g~~dpyv~v~~~~~-------~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~--   79 (1005)
                      -.++|++|..++..|.+||||+|++.+.       .++|+++++++||+|||+|.|.+....   ...|.|+|||++.  
T Consensus         5 ~~i~a~~L~~~d~~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~~~~~~---~~~l~~~V~d~d~~~   81 (120)
T cd04048           5 LSISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFEE---VQKLRFEVYDVDSKS   81 (120)
T ss_pred             EEEEccCCCCCCCCCCCCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEEEEeEe---eeEEEEEEEEecCCc
Confidence            4588999999999999999999999664       489999999999999999999864322   3579999999965  


Q ss_pred             -CCCCCcccEEEEEeCCcccCCCCceeeeEeccc
Q 045058           80 -DTNSRSFLGKVCLTGNSFVPLSDSVVLHYPLEK  112 (1005)
Q Consensus        80 -~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~  112 (1005)
                       ..+++++||++.+++.++...... ..|++|..
T Consensus        82 ~~~~~~d~iG~~~i~l~~l~~~~~~-~~~~~l~~  114 (120)
T cd04048          82 KDLSDHDFLGEAECTLGEIVSSPGQ-KLTLPLKG  114 (120)
T ss_pred             CCCCCCcEEEEEEEEHHHHhcCCCc-EEEEEccC
Confidence             156899999999999999765433 46899843

There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma

>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10

Probab=99.47  E-value=5.9e-13  Score=127.26  Aligned_cols=104  Identities=23%  Similarity=0.322  Sum_probs=83.7

Q ss_pred             eEEEEEEEEEeeeCCCCCCCCCCCcEEEEEECC-----eEEeeecccCCCCCcccccEEEEEeeCC--CCCeEEEEEEec
Q 045058          433 LWYVRVNVVEAQDLVPTEKNHFPDVYVKAQIGN-----QVLKTKICQARTLSAVWNEDLLFVAAEP--FEDHLVLTVEDR  505 (1005)
Q Consensus       433 ~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~lg~-----~~~kT~~~~~~t~~P~w~e~f~f~v~~~--~~~~l~i~V~d~  505 (1005)
                      .+.|+|+|++|++|+.++..+.+||||++.++.     ...+|++++ ++.||.|||.|.|.+...  ....|.|+|||+
T Consensus        13 ~~~L~V~v~~A~~L~~~d~~g~~dpyvkv~l~~~~~~~~~~kT~v~~-~t~nP~wne~f~f~i~~~~~~~~~l~~~v~d~   91 (134)
T cd08403          13 AGRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKK-NTLNPTYNEALVFDVPPENVDNVSLIIAVVDY   91 (134)
T ss_pred             CCEEEEEEEEeeCCCccccCCCCCceEEEEEEeCCcccceecCCccc-CCCCCcccceEEEECCHHHhCCCEEEEEEEEC
Confidence            348999999999999999999999999999832     356888875 899999999999988543  334699999999


Q ss_pred             cCCCCCceeEEEEEcccccccccccccccceeEEccCC
Q 045058          506 VGPGKDEIIGRVIIPLSAIEKRADERIIHSRWFNLEKP  543 (1005)
Q Consensus       506 d~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~w~~L~~~  543 (1005)
                      +..+++++||++.|++.....      ...+|+.+...
T Consensus        92 ~~~~~~~~IG~~~l~~~~~~~------~~~~w~~~~~~  123 (134)
T cd08403          92 DRVGHNELIGVCRVGPNADGQ------GREHWNEMLAN  123 (134)
T ss_pred             CCCCCCceeEEEEECCCCCCc------hHHHHHHHHHC
Confidence            999999999999999863221      23566665444

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind

>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16

Probab=99.46  E-value=3.2e-13  Score=128.74  Aligned_cols=113  Identities=17%  Similarity=0.336  Sum_probs=90.2

Q ss_pred             ceeeeccccceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC------eeeeeeeecCCCCCeeeeEEEEeec--CCCC
Q 045058          259 TASTYDLVERMYFLYVRVVKARELPAMDLTGSIDPFVEVKIGN------YKGITKHYEKNQNPQWHQVFAFSRD--RMQA  330 (1005)
Q Consensus       259 ~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~~------~~~kT~~~~~~~nP~wne~f~f~~~--~~~~  330 (1005)
                      ++..|+.  ..+.|.|+|++|+||+..+..|.+||||++++.+      .++||++++++.||+|||+|.|.+.  ++..
T Consensus         6 ~sL~Y~~--~~~~L~V~VikarnL~~~~~~~~~dpyVkv~llp~~~~~~~~~kT~v~~~t~nPvfnEtF~f~i~~~~l~~   83 (138)
T cd08408           6 LGLEYNA--LTGRLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSDGQEISKSKTSIRRGQPDPEFKETFVFQVALFQLSE   83 (138)
T ss_pred             EEeEEcC--CCCeEEEEEEEecCCCccccCCCCCeeEEEEEEeCCCcceeeccceeecCCCCCcEeeeEEEECCHHHhCc
Confidence            4455554  4489999999999999999899999999999964      2458999999999999999999976  4556


Q ss_pred             cEEEEEEEeCC-CCCCceeEEEEEEceecCCCCCCCCCCCCeEEEeecCC
Q 045058          331 SVLEVVIKDKD-LVKDDFVGIVRFDINEVPLRVPPDSPLAPEWYRLEDKK  379 (1005)
Q Consensus       331 ~~l~v~V~d~~-~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~  379 (1005)
                      ..|.|+|||++ .+++++||++.+++...-.      ....+|+.+....
T Consensus        84 ~~L~~~V~~~~~~~~~~~iG~v~l~~~~~~~------~~~~hW~~~l~~~  127 (138)
T cd08408          84 VTLMFSVYNKRKMKRKEMIGWFSLGLNSSGE------EEEEHWNEMKESK  127 (138)
T ss_pred             cEEEEEEEECCCCCCCcEEEEEEECCcCCCc------hHHHHHHHHHhCC
Confidence            79999999998 7899999999998764321      1234676665543

Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle

>cd04048 C2A_Copine C2 domain first repeat in Copine

Probab=99.46  E-value=2.4e-13  Score=127.15  Aligned_cols=96  Identities=18%  Similarity=0.235  Sum_probs=81.9

Q ss_pred             EEEecCCCCCCCCCCCCCCCcEEEEEECCE-------EEEeeeccCCCCceeccEEEEEEeC-CCceEEEEEEeCCC---
Q 045058          602 ILNAVGLHPMKTRDGRGTSDTYCVAKYGHK-------WVRTRTLVDNLSPKYNEQYTWEVFD-PATVLTVGVFDNSQ---  670 (1005)
Q Consensus       602 i~~a~~L~~~~~~~~~~~~dpyv~~~~g~~-------~~~T~~~~~t~nP~wne~f~~~v~~-~~~~l~i~v~d~~~---  670 (1005)
                      .++|++|++.+   ..|.+||||++.+++.       ..||+++++++||+|||.|.|.+.. ....|.|+|||++.   
T Consensus         6 ~i~a~~L~~~d---~~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~~~~~~~~~l~~~V~d~d~~~~   82 (120)
T cd04048           6 SISCRNLLDKD---VLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFEEVQKLRFEVYDVDSKSK   82 (120)
T ss_pred             EEEccCCCCCC---CCCCCCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEEEEeEeeeEEEEEEEEecCCcC
Confidence            47899999654   4788999999999553       3799999999999999999998753 56789999999986   


Q ss_pred             -cCCCCCCCCCcccEEEEEEcccccCCCEEeeeEeee
Q 045058          671 -LGEKSNGNKDLKIGKVRIRISTLETGRIYTHSYPLL  706 (1005)
Q Consensus       671 -~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~  706 (1005)
                       ++      ++++||.+.+++++|..+.....|++|.
T Consensus        83 ~~~------~~d~iG~~~i~l~~l~~~~~~~~~~~l~  113 (120)
T cd04048          83 DLS------DHDFLGEAECTLGEIVSSPGQKLTLPLK  113 (120)
T ss_pred             CCC------CCcEEEEEEEEHHHHhcCCCcEEEEEcc
Confidence             44      8999999999999998777667888884

There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma

>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC)

Probab=99.43  E-value=2.2e-12  Score=122.57  Aligned_cols=116  Identities=28%  Similarity=0.432  Sum_probs=96.1

Q ss_pred             eEEEEEEEEeecCCCCC--CCCCCCcEEEEEEC------CeeeeeeeecCCC-CCeeeeEEEEeecCCCCcEEEEEEEeC
Q 045058          270 YFLYVRVVKARELPAMD--LTGSIDPFVEVKIG------NYKGITKHYEKNQ-NPQWHQVFAFSRDRMQASVLEVVIKDK  340 (1005)
Q Consensus       270 ~~L~V~v~~a~~L~~~~--~~g~~dPyv~v~~~------~~~~kT~~~~~~~-nP~wne~f~f~~~~~~~~~l~v~V~d~  340 (1005)
                      ..|+|+|++|++|+..+  ..+.+||||++++.      ...++|+++.++. ||.|||+|.|.+.......|.|+|||.
T Consensus         2 ~~l~v~vi~a~~L~~~~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~~~~~~~l~~~V~d~   81 (128)
T cd00275           2 LTLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVPELAFLRFVVYDE   81 (128)
T ss_pred             eEEEEEEEeeecCCCCCCCCCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEeCCCeEEEEEEEEeC
Confidence            36899999999999887  57889999999994      4557899887765 999999999998766556899999999


Q ss_pred             CCCCCceeEEEEEEceecCCCCCCCCCCCCeEEEeecCCCC-ccceEEEEEEEE
Q 045058          341 DLVKDDFVGIVRFDINEVPLRVPPDSPLAPEWYRLEDKKGE-KIKGELMLAVWI  393 (1005)
Q Consensus       341 ~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~-~~~G~i~l~~~~  393 (1005)
                      +..++++||++.+++.++..+        ..|++|.+..+. ...|.|.+.+++
T Consensus        82 ~~~~~~~iG~~~~~l~~l~~g--------~~~~~l~~~~~~~~~~~~l~v~~~~  127 (128)
T cd00275          82 DSGDDDFLGQACLPLDSLRQG--------YRHVPLLDSKGEPLELSTLFVHIDI  127 (128)
T ss_pred             CCCCCcEeEEEEEEhHHhcCc--------eEEEEecCCCCCCCcceeEEEEEEE
Confidence            944899999999999998532        468999887665 256899888764

PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking

>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain

Probab=99.41  E-value=1.6e-12  Score=122.29  Aligned_cols=102  Identities=25%  Similarity=0.430  Sum_probs=84.2

Q ss_pred             cceeeeccccceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeeeeeecCCCCCeeeeEEEEee-c--CCC
Q 045058          258 KTASTYDLVERMYFLYVRVVKARELPAMDLTGSIDPFVEVKIGN-----YKGITKHYEKNQNPQWHQVFAFSR-D--RMQ  329 (1005)
Q Consensus       258 ~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~~-----~~~kT~~~~~~~nP~wne~f~f~~-~--~~~  329 (1005)
                      .++..|+.  ..+.|.|+|++|++|+..+..+.+||||++.+.+     ...+|++++++.||.|||+|.|.. .  +..
T Consensus         5 ~~~l~y~~--~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~Wne~f~f~~~~~~~~~   82 (123)
T cd04035           5 EFTLLYDP--ANSALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTYYGITEEDIQ   82 (123)
T ss_pred             EEEEEEeC--CCCEEEEEEEEeeCCCCCCCCCCCCceEEEEEecCCCCCCceeeeeecCCCCCCccceEEEcCCCHHHhC
Confidence            34445554  4588999999999999988889999999999843     357999999999999999999963 2  334


Q ss_pred             CcEEEEEEEeCCCCCCceeEEEEEEceecCCC
Q 045058          330 ASVLEVVIKDKDLVKDDFVGIVRFDINEVPLR  361 (1005)
Q Consensus       330 ~~~l~v~V~d~~~~~d~~lG~~~i~l~~l~~~  361 (1005)
                      ...|.|+|||++..++++||++.+++.++..+
T Consensus        83 ~~~l~~~v~d~~~~~~~~iG~~~i~l~~l~~~  114 (123)
T cd04035          83 RKTLRLLVLDEDRFGNDFLGETRIPLKKLKPN  114 (123)
T ss_pred             CCEEEEEEEEcCCcCCeeEEEEEEEcccCCCC
Confidence            56899999999833899999999999999754

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain

>PLN03008 Phospholipase D delta

Probab=99.41  E-value=1.6e-12  Score=151.06  Aligned_cols=123  Identities=22%  Similarity=0.415  Sum_probs=103.3

Q ss_pred             eEEEEEEEEeecCCCCCC------------------------------------------CCCCCcEEEEEECCee-eee
Q 045058          270 YFLYVRVVKARELPAMDL------------------------------------------TGSIDPFVEVKIGNYK-GIT  306 (1005)
Q Consensus       270 ~~L~V~v~~a~~L~~~~~------------------------------------------~g~~dPyv~v~~~~~~-~kT  306 (1005)
                      |.|.|+|.+|++|+.+|.                                          .+++||||+|.+++++ .||
T Consensus        14 g~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tSDPYV~I~Lg~~rv~RT   93 (868)
T PLN03008         14 GDLDLKIVKARRLPNMDMFSEHLRRLFTACNACARPTDTDDVDPRDKGEFGDKNIRSHRKVITSDPYVTVVVPQATLART   93 (868)
T ss_pred             cccEEEEEEcccCCchhHHHHHHHhhcccccccccccccccccccccccccccccccccccCCCCceEEEEECCcceeeE
Confidence            778999999999885221                                          2467999999998864 599


Q ss_pred             eeecCCCCCeeeeEEEEeecCCCCcEEEEEEEeCCCCCCceeEEEEEEceecCCCCCCCCCCCCeEEEeecCCCCc--cc
Q 045058          307 KHYEKNQNPQWHQVFAFSRDRMQASVLEVVIKDKDLVKDDFVGIVRFDINEVPLRVPPDSPLAPEWYRLEDKKGEK--IK  384 (1005)
Q Consensus       307 ~~~~~~~nP~wne~f~f~~~~~~~~~l~v~V~d~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~--~~  384 (1005)
                      ++++++.||+|||+|.|.+.... ..|.|+|||+|..++++||++.|++.++..+     .....|++|.+..+..  ..
T Consensus        94 rVi~n~~NPvWNE~F~f~vah~~-s~L~f~VkD~D~~gaD~IG~a~IPL~~L~~G-----e~vd~Wl~Ll~~~~kp~k~~  167 (868)
T PLN03008         94 RVLKNSQEPLWDEKFNISIAHPF-AYLEFQVKDDDVFGAQIIGTAKIPVRDIASG-----ERISGWFPVLGASGKPPKAE  167 (868)
T ss_pred             EeCCCCCCCCcceeEEEEecCCC-ceEEEEEEcCCccCCceeEEEEEEHHHcCCC-----CceEEEEEccccCCCCCCCC
Confidence            99999999999999999998865 5899999999954579999999999999876     3468999999877643  45


Q ss_pred             eEEEEEEEEeccCC
Q 045058          385 GELMLAVWIGTQAD  398 (1005)
Q Consensus       385 G~i~l~~~~~~~~d  398 (1005)
                      |+|++++.|.+...
T Consensus       168 ~kl~v~lqf~pv~~  181 (868)
T PLN03008        168 TAIFIDMKFTPFDQ  181 (868)
T ss_pred             cEEEEEEEEEEccc
Confidence            79999999988654

>cd04047 C2B_Copine C2 domain second repeat in Copine

Probab=99.34  E-value=4.7e-12  Score=116.56  Aligned_cols=93  Identities=22%  Similarity=0.314  Sum_probs=75.0

Q ss_pred             EEEEEEeecCCCCCCCCCCCcEEEEEECCe------EeeccccCCCCCCceeeEEEEEeccCccc-cceEEEEEEEeCCC
Q 045058            7 GVQVVGAHNLLPKDGKGSSSAFVELYFDGQ------RFRTTIKENDLNPVWNESFYFNISDASKL-HYLTLEAYIYNNIG   79 (1005)
Q Consensus         7 ~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~------~~~T~v~~~t~nP~Wne~f~f~v~~~~~~-~~~~l~v~V~d~~~   79 (1005)
                      .+-.++|++|+.+|..|.+||||+|++.+.      .++|+++++++||+|| +|.|.+...... ....|.|+|||++.
T Consensus         3 ~~~~i~a~~L~~~d~~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~~~~l~~~~~~~~l~~~V~d~d~   81 (110)
T cd04047           3 VELQFSGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIPLQKLCNGDYDRPIKIEVYDYDS   81 (110)
T ss_pred             EEEEEEeCCCCCCCCCCCCCeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEEHHHhcCCCcCCEEEEEEEEeCC
Confidence            455679999999999999999999998543      5899999999999999 788875322111 13589999999964


Q ss_pred             CCCCCcccEEEEEeCCcccCCC
Q 045058           80 DTNSRSFLGKVCLTGNSFVPLS  101 (1005)
Q Consensus        80 ~~~~d~~lG~~~i~l~~l~~~~  101 (1005)
                       .++|++||++.+++.++....
T Consensus        82 -~~~d~~iG~~~~~l~~l~~~~  102 (110)
T cd04047          82 -SGKHDLIGEFETTLDELLKSS  102 (110)
T ss_pred             -CCCCcEEEEEEEEHHHHhcCC
Confidence             568999999999999987443

There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom

>cd04047 C2B_Copine C2 domain second repeat in Copine

Probab=99.31  E-value=9.3e-12  Score=114.61  Aligned_cols=87  Identities=21%  Similarity=0.336  Sum_probs=74.7

Q ss_pred             EEEEEeecCCCCCCCCCCCcEEEEEECCe------eeeeeeecCCCCCeeeeEEEEeecCCC----CcEEEEEEEeCC-C
Q 045058          274 VRVVKARELPAMDLTGSIDPFVEVKIGNY------KGITKHYEKNQNPQWHQVFAFSRDRMQ----ASVLEVVIKDKD-L  342 (1005)
Q Consensus       274 V~v~~a~~L~~~~~~g~~dPyv~v~~~~~------~~kT~~~~~~~nP~wne~f~f~~~~~~----~~~l~v~V~d~~-~  342 (1005)
                      +..++|++|+..+..|.+||||++++.+.      .++|++++++.||.|| .|.|...++.    ...|.|+|||++ .
T Consensus         4 ~~~i~a~~L~~~d~~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~~~~l~~~~~~~~l~~~V~d~d~~   82 (110)
T cd04047           4 ELQFSGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIPLQKLCNGDYDRPIKIEVYDYDSS   82 (110)
T ss_pred             EEEEEeCCCCCCCCCCCCCeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEEHHHhcCCCcCCEEEEEEEEeCCC
Confidence            45678999999999999999999998653      4799999999999999 7888765432    468999999999 7


Q ss_pred             CCCceeEEEEEEceecCCC
Q 045058          343 VKDDFVGIVRFDINEVPLR  361 (1005)
Q Consensus       343 ~~d~~lG~~~i~l~~l~~~  361 (1005)
                      ++|++||++.+++.++...
T Consensus        83 ~~d~~iG~~~~~l~~l~~~  101 (110)
T cd04047          83 GKHDLIGEFETTLDELLKS  101 (110)
T ss_pred             CCCcEEEEEEEEHHHHhcC
Confidence            7899999999999999743

There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=99.30  E-value=5.8e-12  Score=160.54  Aligned_cols=118  Identities=20%  Similarity=0.273  Sum_probs=98.0

Q ss_pred             cEEEEEEEEeecCCCCCCCCCCCcEEEEEECCe-EeeccccCCCCCCceeeEEEEEeccCccccceEEEEEEEeCCCCCC
Q 045058            4 LKLGVQVVGAHNLLPKDGKGSSSAFVELYFDGQ-RFRTTIKENDLNPVWNESFYFNISDASKLHYLTLEAYIYNNIGDTN   82 (1005)
Q Consensus         4 ~~l~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~-~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~~~~   82 (1005)
                      |.|+|+|++|+||.  +..|.+||||++.++++ +.||++++++.||+|||.|.|.+.++.  ....|.|+|||+| .+ 
T Consensus      1980 G~L~V~V~~a~nl~--~~~~~sdPyv~l~~g~~~~~kTkvvk~~~nP~Wne~f~~~~~~p~--~~~~l~iev~d~d-~f- 2053 (2102)
T PLN03200       1980 GSLTVTIKRGNNLK--QSMGNTNAFCKLTLGNGPPRQTKVVSHSSSPEWKEGFTWAFDSPP--KGQKLHISCKSKN-TF- 2053 (2102)
T ss_pred             cceEEEEeeccccc--cccCCCCCeEEEEECCCCcccccccCCCCCCCcccceeeeecCCC--CCCceEEEEEecC-cc-
Confidence            78999999999998  44689999999999965 889999999999999999999886654  2357999999996 45 


Q ss_pred             CCcccEEEEEeCCcccCCCCceeeeEecccCCCcceeeeE---EEEEEEEec
Q 045058           83 SRSFLGKVCLTGNSFVPLSDSVVLHYPLEKRGIFSHVRGE---LGLKVYITD  131 (1005)
Q Consensus        83 ~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~---i~l~~~~~~  131 (1005)
                      +++.||.+.|++.++...+.. ..||+|.+.+.   ..|.   |.+.+.|.+
T Consensus      2054 ~kd~~G~~~i~l~~vv~~~~~-~~~~~L~~~~~---k~G~~~~~~~e~~w~~ 2101 (2102)
T PLN03200       2054 GKSSLGKVTIQIDRVVMEGTY-SGEYSLNPESN---KDGSSRTLEIEFQWSN 2101 (2102)
T ss_pred             CCCCCceEEEEHHHHhcCcee-eeeeecCcccc---cCCCcceEEEEEEecC
Confidence            555999999999999887765 46999996542   2466   888887754

>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking

Probab=99.30  E-value=9.1e-12  Score=108.80  Aligned_cols=82  Identities=30%  Similarity=0.579  Sum_probs=71.9

Q ss_pred             EEEEEEEeecCCCCCCCCCCCcEEEEEECC---eEeeccccCCCCCCceeeEEEEEeccCccccceEEEEEEEeCCCCCC
Q 045058            6 LGVQVVGAHNLLPKDGKGSSSAFVELYFDG---QRFRTTIKENDLNPVWNESFYFNISDASKLHYLTLEAYIYNNIGDTN   82 (1005)
Q Consensus         6 l~V~v~~a~~L~~~d~~g~~dpyv~v~~~~---~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~~~~   82 (1005)
                      |+|+|++|+||...+..+.+||||++++.+   ..++|++++++.+|.|||+|.|.+...+.   ..|.|+|||++ ..+
T Consensus         1 L~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~---~~l~~~V~~~~-~~~   76 (85)
T PF00168_consen    1 LTVTIHSARNLPSKDSNGKPDPYVRVSVNGSESTKYKTKVKKNTSNPVWNEEFEFPLDDPDL---DSLSFEVWDKD-SFG   76 (85)
T ss_dssp             EEEEEEEEESSSSSSTTSSBEEEEEEEEETTTCEEEEECCBSSBSSEEEEEEEEEEESHGCG---TEEEEEEEEET-SSS
T ss_pred             CEEEEEEEECCCCcccCCcccccceeecceeeeeeeeeeeeeccccceeeeeeeeeeecccc---cceEEEEEECC-CCC
Confidence            789999999999988888999999999987   67999999999999999999999765442   34999999984 455


Q ss_pred             CCcccEEEE
Q 045058           83 SRSFLGKVC   91 (1005)
Q Consensus        83 ~d~~lG~~~   91 (1005)
                      +|++||++.
T Consensus        77 ~~~~iG~~~   85 (85)
T PF00168_consen   77 KDELIGEVK   85 (85)
T ss_dssp             SEEEEEEEE
T ss_pred             CCCEEEEEC
Confidence            799999974

C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....

>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

Probab=99.26  E-value=7.4e-13  Score=146.52  Aligned_cols=123  Identities=27%  Similarity=0.438  Sum_probs=103.4

Q ss_pred             cEEEEEEEEeecCCCCCCCCCCCcEEEEEEC--------------------------C-----eEeeccccCCCCCCcee
Q 045058            4 LKLGVQVVGAHNLLPKDGKGSSSAFVELYFD--------------------------G-----QRFRTTIKENDLNPVWN   52 (1005)
Q Consensus         4 ~~l~V~v~~a~~L~~~d~~g~~dpyv~v~~~--------------------------~-----~~~~T~v~~~t~nP~Wn   52 (1005)
                      ..+.|.+..|+||.++|.+|.+|||+...+-                          |     -.+-|+|+++|+||+|+
T Consensus       114 ~~l~is~~~ak~l~akd~ngfSdP~~m~g~~p~~~~~~~pra~~eqrdgl~~~~~~~GpiPAKlIkatsvk~~TLnPkW~  193 (1103)
T KOG1328|consen  114 VLLNISLLEAKDLIAKDVNGFSDPFAMMGVVPGTRKENSPRALHEQRDGLMHRFQDTGPIPAKLIKATSVKKKTLNPKWS  193 (1103)
T ss_pred             HHHHHHHHHhcCccccCCCCCCChhhhhccccccccccChhhhhhhhhhhhhccccCCCCcHHHhhhcccccccCCcchh
Confidence            3456778899999999999999999998860                          1     13568899999999999


Q ss_pred             eEEEEEeccCccccceEEEEEEEeCCCC--------------------------------CCC---CcccEEEEEeCCcc
Q 045058           53 ESFYFNISDASKLHYLTLEAYIYNNIGD--------------------------------TNS---RSFLGKVCLTGNSF   97 (1005)
Q Consensus        53 e~f~f~v~~~~~~~~~~l~v~V~d~~~~--------------------------------~~~---d~~lG~~~i~l~~l   97 (1005)
                      |.|.|.|.+   ++...+.+.+||+|+.                                .+.   |||||++.|++.++
T Consensus       194 EkF~F~IeD---v~tDqfHlDIWDHDDe~sv~dAvs~LNeV~G~kG~GRyFKqv~qSARans~d~tDDFLGciNipl~Ei  270 (1103)
T KOG1328|consen  194 EKFQFTIED---VQTDQFHLDIWDHDDEESVLDAVSSLNEVTGFKGIGRYFKQVTQSARANSDDCTDDFLGCINIPLAEI  270 (1103)
T ss_pred             hheeeehhc---cccceeeeecccCCccHHHHHHHHHHhhhhcchhHHHHHHHHHHHHhcCCCccccccccccccchhcC
Confidence            999999954   4567899999999322                                223   89999999999999


Q ss_pred             cCCCCceeeeEecccCCCcceeeeEEEEEEEEec
Q 045058           98 VPLSDSVVLHYPLEKRGIFSHVRGELGLKVYITD  131 (1005)
Q Consensus        98 ~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~~~  131 (1005)
                      ...|-  +.||.|++++..++++|.+++++++..
T Consensus       271 P~~Gl--d~WFkLepRS~~S~VqG~~~LklwLsT  302 (1103)
T KOG1328|consen  271 PPDGL--DQWFKLEPRSDKSKVQGQVKLKLWLST  302 (1103)
T ss_pred             CcchH--HHHhccCcccccccccceEEEEEEEee
Confidence            88775  479999999999999999999999877

>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.25  E-value=1.4e-11  Score=134.58  Aligned_cols=121  Identities=26%  Similarity=0.467  Sum_probs=105.4

Q ss_pred             eeEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeeecCCCCCeeeeEEEEeecCCCCcEEEEEEEeCCC------
Q 045058          269 MYFLYVRVVKARELPAMDLTGSIDPFVEVKIGNYKGITKHYEKNQNPQWHQVFAFSRDRMQASVLEVVIKDKDL------  342 (1005)
Q Consensus       269 ~~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~~~~~kT~~~~~~~nP~wne~f~f~~~~~~~~~l~v~V~d~~~------  342 (1005)
                      ...+.++|+.|.+|..+|..|++||||.+.++..+.+|++|...+||+|||.|.|..++.. +.|.+.|||.|.      
T Consensus       294 sakitltvlcaqgl~akdktg~sdpyvt~qv~ktkrrtrti~~~lnpvw~ekfhfechnst-drikvrvwded~dlkskl  372 (1283)
T KOG1011|consen  294 SAKITLTVLCAQGLIAKDKTGKSDPYVTAQVGKTKRRTRTIHQELNPVWNEKFHFECHNST-DRIKVRVWDEDNDLKSKL  372 (1283)
T ss_pred             ceeeEEeeeecccceecccCCCCCCcEEEeecccchhhHhhhhccchhhhhheeeeecCCC-ceeEEEEecCcccHHHHH
Confidence            3568899999999999999999999999999999999999999999999999999998876 689999999862      


Q ss_pred             ------CCCceeEEEEEEceecCCCCCCCCCCCCeEEEeecCCCCc-cceEEEEEEEEeccC
Q 045058          343 ------VKDDFVGIVRFDINEVPLRVPPDSPLAPEWYRLEDKKGEK-IKGELMLAVWIGTQA  397 (1005)
Q Consensus       343 ------~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~-~~G~i~l~~~~~~~~  397 (1005)
                            .+|||||+..|.+..+.       ...+.||+|+....++ ..|.|++.+.+.-.+
T Consensus       373 rqkl~resddflgqtvievrtls-------gemdvwynlekrtdksavsgairlhisveikg  427 (1283)
T KOG1011|consen  373 RQKLTRESDDFLGQTVIEVRTLS-------GEMDVWYNLEKRTDKSAVSGAIRLHISVEIKG  427 (1283)
T ss_pred             HHHhhhcccccccceeEEEEecc-------cchhhhcchhhccchhhccceEEEEEEEEEcC
Confidence                  46999999999999885       3478899999877655 789888888765433

>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking

Probab=99.24  E-value=3.8e-11  Score=104.84  Aligned_cols=81  Identities=36%  Similarity=0.571  Sum_probs=73.2

Q ss_pred             EEEEEEEeecCCCCCCCCCCCcEEEEEECC---eeeeeeeecCCCCCeeeeEEEEeecCCCCcEEEEEEEeCC-CCCCce
Q 045058          272 LYVRVVKARELPAMDLTGSIDPFVEVKIGN---YKGITKHYEKNQNPQWHQVFAFSRDRMQASVLEVVIKDKD-LVKDDF  347 (1005)
Q Consensus       272 L~V~v~~a~~L~~~~~~g~~dPyv~v~~~~---~~~kT~~~~~~~nP~wne~f~f~~~~~~~~~l~v~V~d~~-~~~d~~  347 (1005)
                      |.|+|++|++|+..+..+.+||||++.+++   ..++|+++.++.+|.|+|.|.|.+.......|.|+|||++ .+++++
T Consensus         1 L~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~~~V~~~~~~~~~~~   80 (85)
T PF00168_consen    1 LTVTIHSARNLPSKDSNGKPDPYVRVSVNGSESTKYKTKVKKNTSNPVWNEEFEFPLDDPDLDSLSFEVWDKDSFGKDEL   80 (85)
T ss_dssp             EEEEEEEEESSSSSSTTSSBEEEEEEEEETTTCEEEEECCBSSBSSEEEEEEEEEEESHGCGTEEEEEEEEETSSSSEEE
T ss_pred             CEEEEEEEECCCCcccCCcccccceeecceeeeeeeeeeeeeccccceeeeeeeeeeecccccceEEEEEECCCCCCCCE
Confidence            689999999999988888999999999988   5689999999999999999999977666667999999999 667999


Q ss_pred             eEEEE
Q 045058          348 VGIVR  352 (1005)
Q Consensus       348 lG~~~  352 (1005)
                      ||++.
T Consensus        81 iG~~~   85 (85)
T PF00168_consen   81 IGEVK   85 (85)
T ss_dssp             EEEEE
T ss_pred             EEEEC
Confidence            99974

C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....

>PF06398 Pex24p: Integral peroxisomal membrane peroxin; InterPro: IPR010482 Peroxisomes play diverse roles in the cell, compartmentalising many activities related to lipid metabolism and functioning in the decomposition of toxic hydrogen peroxide

Probab=99.24  E-value=1.4e-10  Score=130.39  Aligned_cols=177  Identities=23%  Similarity=0.379  Sum_probs=123.4

Q ss_pred             ccchhhhHHHHHHHHHHHHHHHHHH---HHhhcccccCCchhHHHHHHHHHHHHhcccch---HHHHHHHHHHHhhhccc
Q 045058          793 LWSMRRSKANFFRLMTVFSGLFAVG---KWFADICMWKNPITTVLVHVLYLMLACFPELI---LPTVFLYMFLIGIWNYR  866 (1005)
Q Consensus       793 ~fs~~~~k~n~~rl~~~~~~~~~~~---~~~~~l~~W~~p~~t~~~~~~~~~~~~~~~l~---~p~~~l~~~~~~~~~~~  866 (1005)
                      .+|++.+..|+.++.+.+..++.++   +.+.++++|++|..|..++++|.++|++|.+.   +|++++ ++++++..|.
T Consensus         2 ~lS~~ll~~n~~~l~~~l~~~f~~~~~~d~vl~il~W~~p~~t~~~L~l~t~~~l~p~l~l~~lp~~~l-l~~il~~~yl   80 (359)
T PF06398_consen    2 PLSSPLLSSNFPRLSSRLGPIFPFQLILDRVLRILTWTNPDYTLSFLLLYTFLCLNPYLLLLSLPLGLL-LFGILLPSYL   80 (359)
T ss_pred             CcChHHHHhChHHHHHHHHHhhHHHHHHHHHHHeEEeCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence            4788999999999999999999999   99999999999999999999999999999883   454433 2333444443


Q ss_pred             cC-CCCCCCCCcccccccCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHhhhhhHHHHHHHHHhHHHHHhh----ccccC
Q 045058          867 YR-PRYPPHMNIKISQAEAVHPDELDEEFDTFPTSRSPELVRMRYDRLRSVAGRIQTVVGDVATQGERLQA----LISWR  941 (1005)
Q Consensus       867 ~~-~~~~~~~~~~~s~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~vQ~~l~~~a~~~e~~~~----l~~w~  941 (1005)
                      .+ |...+....        ...+.+.+.+..|+-.+.      ...+...++.+||.|+.+.+.++.+..    +++|+
T Consensus        81 ~~~p~~~~~~~~--------~~~~~~~~~~~~ptl~~~------s~e~~~nL~dlQn~m~~~~~~~d~~~~~~~~~~~f~  146 (359)
T PF06398_consen   81 YRHPSPTSSLPK--------SYEDHNPEPSEGPTLDKP------SREIVMNLRDLQNKMEDLSDPYDFLSSFLYPYLNFS  146 (359)
T ss_pred             eecCCCcccccc--------cccccCCCcCCCCCcchh------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCC
Confidence            33 222211100        000111111111111101      234556777899999999999998875    45799


Q ss_pred             CchhHHHHHHHHHHHHHHH----HHHHHHHHHHHhhhh-hhcCCccCC
Q 045058          942 DPRATAIFITFCLVAALVL----FLTPFQVIAALAGFW-VMRHPRFRR  984 (1005)
Q Consensus       942 ~p~~t~~~~~~~~~~~~v~----~~iP~r~i~l~~g~~-~~~~P~f~~  984 (1005)
                      ++..|.+++.+|+++.+.+    ++||+|++++++|.. .+.||..++
T Consensus       147 ~e~~s~~~f~~l~~~~~~~~l~~~~ip~r~~ll~~g~~~l~~Hp~~~~  194 (359)
T PF06398_consen  147 DENLSSLIFLLLLLSPILLLLLSPFIPWRFVLLVSGAFVLLYHPPWRQ  194 (359)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHhhcCCcHHH
Confidence            9999998888887777654    468999999999944 468997664

Sequence similarity was identified between two hypothetical proteins and the peroxin integral membrane protein Pex24p [].

>PLN02270 phospholipase D alpha

Probab=99.23  E-value=6.2e-11  Score=138.30  Aligned_cols=126  Identities=20%  Similarity=0.291  Sum_probs=107.0

Q ss_pred             ceEEEEEEEEecCCCCCCC---------------CCCCCCCCcEEEEEECCEEE-EeeeccCC-CCceeccEEEEEEeCC
Q 045058          595 IGILELGILNAVGLHPMKT---------------RDGRGTSDTYCVAKYGHKWV-RTRTLVDN-LSPKYNEQYTWEVFDP  657 (1005)
Q Consensus       595 ~g~l~v~i~~a~~L~~~~~---------------~~~~~~~dpyv~~~~g~~~~-~T~~~~~t-~nP~wne~f~~~v~~~  657 (1005)
                      -|.|.++|++|++|+.++.               +.+.+.+||||.|.+++.++ ||+++.+. .||+|||.|.+++..+
T Consensus         7 hg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~a~v~rtr~~~~~~~~p~w~e~f~i~~ah~   86 (808)
T PLN02270          7 HGTLHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDLEKARVGRTRKIENEPKNPRWYESFHIYCAHM   86 (808)
T ss_pred             ecceEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEeCCcEEEEEeecCCCCCCCccccceEEeeccC
Confidence            3899999999999986421               12346789999999988765 99999875 6999999999999999


Q ss_pred             CceEEEEEEeCCCcCCCCCCCCCcccEEEEEEcccccCCCEEeeeEeeeecCCCCCceeeEEEEEEEEee
Q 045058          658 ATVLTVGVFDNSQLGEKSNGNKDLKIGKVRIRISTLETGRIYTHSYPLLVLHPTGVKKMGELHLAIRFSC  727 (1005)
Q Consensus       658 ~~~l~i~v~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~G~i~l~~~~~~  727 (1005)
                      .+.|+|.|.|.|.++       ..+||++.||+.+|..|...++||++.....+-.+....|+++++|.+
T Consensus        87 ~~~v~f~vkd~~~~g-------~~~ig~~~~p~~~~~~g~~i~~~~~~~~~~~~p~~~~~~~~~~~~f~~  149 (808)
T PLN02270         87 ASNIIFTVKDDNPIG-------ATLIGRAYIPVEEILDGEEVDRWVEILDNDKNPIHGGSKIHVKLQYFE  149 (808)
T ss_pred             cceEEEEEecCCccC-------ceEEEEEEEEHHHhcCCCccccEEeccCCCCCcCCCCCEEEEEEEEEE
Confidence            999999999999876       569999999999999999999999998666554434458999999976

>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin

Probab=99.20  E-value=1e-10  Score=108.80  Aligned_cols=93  Identities=20%  Similarity=0.239  Sum_probs=77.8

Q ss_pred             EEEEEEEecCCCCCCCCCCCC--CCCcEEEEEECC---EEEEeeeccCCCC--ceeccEEEEEEeCC-------------
Q 045058          598 LELGILNAVGLHPMKTRDGRG--TSDTYCVAKYGH---KWVRTRTLVDNLS--PKYNEQYTWEVFDP-------------  657 (1005)
Q Consensus       598 l~v~i~~a~~L~~~~~~~~~~--~~dpyv~~~~g~---~~~~T~~~~~t~n--P~wne~f~~~v~~~-------------  657 (1005)
                      |+|.|.+|+|++..+. +..|  .+||||++.+.+   ...+|.++++++|  |+||++|.|++.-+             
T Consensus         2 LRViIw~~~~v~~~~~-~~~g~~~sD~yVK~~L~~~~~~kqkTDVHyrslnG~~~FNwRfvF~~~~~~~~~~~~~~~~~~   80 (133)
T cd08374           2 LRVIVWNTRDVLNDDT-NITGEKMSDIYVKGWLDGLEEDKQKTDVHYRSLDGEGNFNWRFVFPFDYLPAEKKIVVIKKEH   80 (133)
T ss_pred             EEEEEEECcCCccccc-ccCCccccCeEEEEEEccCcccccccceEEecCCCCcEEeEEEEEeeecCCccceeEEEeecc
Confidence            7999999999775542 2244  499999999943   5689999999999  99999999987541             


Q ss_pred             -----------CceEEEEEEeCCCcCCCCCCCCCcccEEEEEEcccccCCC
Q 045058          658 -----------ATVLTVGVFDNSQLGEKSNGNKDLKIGKVRIRISTLETGR  697 (1005)
Q Consensus       658 -----------~~~l~i~v~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~  697 (1005)
                                 ...|+|+|||+|.++      +|++||.+.++|+.+..+.
T Consensus        81 ~~~~~~~e~~~~~~L~lqvwD~D~~s------~dd~iG~~~l~l~~l~~~~  125 (133)
T cd08374          81 FWSLDETEYKIPPKLTLQVWDNDKFS------PDDFLGSLELDLSILPRPA  125 (133)
T ss_pred             ccccCcceEecCcEEEEEEEECcccC------CCCcceEEEEEhhhccccc
Confidence                       358999999999877      8999999999999988765

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd00030 C2 C2 domain

Probab=99.11  E-value=4.3e-10  Score=101.36  Aligned_cols=101  Identities=35%  Similarity=0.558  Sum_probs=83.3

Q ss_pred             EEEEEEEeecCCCCCCCCCCCcEEEEEECC-eEeeccccCCCCCCceeeEEEEEeccCccccceEEEEEEEeCCCCCCCC
Q 045058            6 LGVQVVGAHNLLPKDGKGSSSAFVELYFDG-QRFRTTIKENDLNPVWNESFYFNISDASKLHYLTLEAYIYNNIGDTNSR   84 (1005)
Q Consensus         6 l~V~v~~a~~L~~~d~~g~~dpyv~v~~~~-~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~~~~~d   84 (1005)
                      |.|.|++|++|......+.++|||.+.+.+ ..++|.+..++.||.|||.|.|.+...   ....|.|.||+++. ...+
T Consensus         1 l~v~i~~~~~l~~~~~~~~~~~~v~v~~~~~~~~~T~~~~~~~~P~w~~~~~~~~~~~---~~~~l~i~v~~~~~-~~~~   76 (102)
T cd00030           1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGGKQKFKTKVVKNTLNPVWNETFEFPVLDP---ESDTLTVEVWDKDR-FSKD   76 (102)
T ss_pred             CEEEEEeeeCCCCcCCCCCCCcEEEEEeccCceEecceeCCCCCCcccceEEEEccCC---CCCEEEEEEEecCC-CCCC
Confidence            579999999998876777899999999998 789999999999999999999998652   23589999999853 4468


Q ss_pred             cccEEEEEeCCcccCCCCceeeeEec
Q 045058           85 SFLGKVCLTGNSFVPLSDSVVLHYPL  110 (1005)
Q Consensus        85 ~~lG~~~i~l~~l~~~~~~~~~w~~L  110 (1005)
                      ++||.+.+++.++.........|++|
T Consensus        77 ~~ig~~~~~l~~l~~~~~~~~~~~~l  102 (102)
T cd00030          77 DFLGEVEIPLSELLDSGKEGELWLPL  102 (102)
T ss_pred             ceeEEEEEeHHHhhhcCCcCcceecC
Confidence            99999999999987223333467765

The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.

>cd00030 C2 C2 domain

Probab=99.09  E-value=6e-10  Score=100.42  Aligned_cols=99  Identities=31%  Similarity=0.509  Sum_probs=84.5

Q ss_pred             EEEEEEEecCCCCCCCCCCCCCCCcEEEEEECC-EEEEeeeccCCCCceeccEEEEEEeC-CCceEEEEEEeCCCcCCCC
Q 045058          598 LELGILNAVGLHPMKTRDGRGTSDTYCVAKYGH-KWVRTRTLVDNLSPKYNEQYTWEVFD-PATVLTVGVFDNSQLGEKS  675 (1005)
Q Consensus       598 l~v~i~~a~~L~~~~~~~~~~~~dpyv~~~~g~-~~~~T~~~~~t~nP~wne~f~~~v~~-~~~~l~i~v~d~~~~~~~~  675 (1005)
                      |.|.|++|++|...   ...+..+|||.+.+.+ ..++|+++.++.||.||+.|.|++.. ....|.|+|||.+...   
T Consensus         1 l~v~i~~~~~l~~~---~~~~~~~~~v~v~~~~~~~~~T~~~~~~~~P~w~~~~~~~~~~~~~~~l~i~v~~~~~~~---   74 (102)
T cd00030           1 LRVTVIEARNLPAK---DLNGKSDPYVKVSLGGKQKFKTKVVKNTLNPVWNETFEFPVLDPESDTLTVEVWDKDRFS---   74 (102)
T ss_pred             CEEEEEeeeCCCCc---CCCCCCCcEEEEEeccCceEecceeCCCCCCcccceEEEEccCCCCCEEEEEEEecCCCC---
Confidence            47899999999854   2356789999999987 88999999999999999999999988 6789999999998654   


Q ss_pred             CCCCCcccEEEEEEccccc-CCCEEeeeEee
Q 045058          676 NGNKDLKIGKVRIRISTLE-TGRIYTHSYPL  705 (1005)
Q Consensus       676 ~~~~d~~lG~~~i~l~~l~-~~~~~~~~~~L  705 (1005)
                         .+.+||.+.+++.++. .......|++|
T Consensus        75 ---~~~~ig~~~~~l~~l~~~~~~~~~~~~l  102 (102)
T cd00030          75 ---KDDFLGEVEIPLSELLDSGKEGELWLPL  102 (102)
T ss_pred             ---CCceeEEEEEeHHHhhhcCCcCcceecC
Confidence               6899999999999988 55555677764

The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.

>PLN02223 phosphoinositide phospholipase C

Probab=99.08  E-value=8.8e-10  Score=123.84  Aligned_cols=118  Identities=18%  Similarity=0.273  Sum_probs=90.8

Q ss_pred             cEEEEEEEEeecCCC-----CCCCCCCCcEEEEEECC-----eEeeccccCCCCCCceeeEEEEEeccCccccceEEEEE
Q 045058            4 LKLGVQVVGAHNLLP-----KDGKGSSSAFVELYFDG-----QRFRTTIKENDLNPVWNESFYFNISDASKLHYLTLEAY   73 (1005)
Q Consensus         4 ~~l~V~v~~a~~L~~-----~d~~g~~dpyv~v~~~~-----~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~   73 (1005)
                      ..|.|+|++|.++..     .+.....||||+|.+.|     .+++|++..|+.||+|||+|.|.+..++-   ..|.|.
T Consensus       409 ~~L~V~Visgq~~~~~~~k~~~~~s~~DpyV~VeI~Gvp~D~~~~kT~v~nNg~nPvWne~F~F~i~~PEL---AlLrf~  485 (537)
T PLN02223        409 KILKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISIAGVPHDEKIMKTTVKNNEWKPTWGEEFTFPLTYPDL---ALISFE  485 (537)
T ss_pred             eEEEEEEEEcccccCCcccccCCCCCCCeEEEEEEeeccCCcceeEEEeCCCCcCceecceeEEEEEccCc---eEEEEE
Confidence            469999999999751     12234579999999865     25788898999999999999999987762   579999


Q ss_pred             EEeCCCCCCCCcccEEEEEeCCcccCCCCceeeeEecccCCCcceeeeEEEEEEEE
Q 045058           74 IYNNIGDTNSRSFLGKVCLTGNSFVPLSDSVVLHYPLEKRGIFSHVRGELGLKVYI  129 (1005)
Q Consensus        74 V~d~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~  129 (1005)
                      |+|+| ...+|+|+|++.+|+..|..+-    .+++|..+.+..-..-.+.+++.+
T Consensus       486 V~D~D-~~~~ddfiGQ~~LPv~~Lr~Gy----R~VpL~~~~g~~l~~~~Ll~~f~~  536 (537)
T PLN02223        486 VYDYE-VSTADAFCGQTCLPVSELIEGI----RAVPLYDERGKACSSTMLLTRFKW  536 (537)
T ss_pred             EEecC-CCCCCcEEEEEecchHHhcCCc----eeEeccCCCcCCCCCceEEEEEEe
Confidence            99995 4458999999999999987754    468888775543334455555543

>PLN02223 phosphoinositide phospholipase C

Probab=99.05  E-value=2e-09  Score=121.10  Aligned_cols=120  Identities=19%  Similarity=0.249  Sum_probs=90.9

Q ss_pred             ceEEEEEEEEecCCCCC--CCCCCCCCCCcEEEEEECC-----EEEEeeeccCCCCceeccEEEEEEeCC-CceEEEEEE
Q 045058          595 IGILELGILNAVGLHPM--KTRDGRGTSDTYCVAKYGH-----KWVRTRTLVDNLSPKYNEQYTWEVFDP-ATVLTVGVF  666 (1005)
Q Consensus       595 ~g~l~v~i~~a~~L~~~--~~~~~~~~~dpyv~~~~g~-----~~~~T~~~~~t~nP~wne~f~~~v~~~-~~~l~i~v~  666 (1005)
                      ...|+|+|+.|++++..  +..+.....||||+|.+.|     ...+|++..++.||+|||+|+|++..| -..|.|+|+
T Consensus       408 ~~~L~V~Visgq~~~~~~~k~~~~~s~~DpyV~VeI~Gvp~D~~~~kT~v~nNg~nPvWne~F~F~i~~PELAlLrf~V~  487 (537)
T PLN02223        408 VKILKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISIAGVPHDEKIMKTTVKNNEWKPTWGEEFTFPLTYPDLALISFEVY  487 (537)
T ss_pred             ceEEEEEEEEcccccCCcccccCCCCCCCeEEEEEEeeccCCcceeEEEeCCCCcCceecceeEEEEEccCceEEEEEEE
Confidence            46799999999998621  1112234579999999843     346787777889999999999999887 468999999


Q ss_pred             eCCCcCCCCCCCCCcccEEEEEEcccccCCCEEeeeEeeeecCCCCCceeeEEEEEEE
Q 045058          667 DNSQLGEKSNGNKDLKIGKVRIRISTLETGRIYTHSYPLLVLHPTGVKKMGELHLAIR  724 (1005)
Q Consensus       667 d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~G~i~l~~~  724 (1005)
                      |+|...      +|+|+|...+|++.|..|-   +..+|....+.... .-.|.+++.
T Consensus       488 D~D~~~------~ddfiGQ~~LPv~~Lr~Gy---R~VpL~~~~g~~l~-~~~Ll~~f~  535 (537)
T PLN02223        488 DYEVST------ADAFCGQTCLPVSELIEGI---RAVPLYDERGKACS-STMLLTRFK  535 (537)
T ss_pred             ecCCCC------CCcEEEEEecchHHhcCCc---eeEeccCCCcCCCC-CceEEEEEE
Confidence            998655      7999999999999999996   77888755543332 244555444

>smart00239 C2 Protein kinase C conserved region 2 (CalB)

Probab=99.05  E-value=1.2e-09  Score=98.49  Aligned_cols=91  Identities=31%  Similarity=0.510  Sum_probs=79.0

Q ss_pred             EEEEEEEecCCCCCCCCCCCCCCCcEEEEEECCE---EEEeeeccCCCCceeccEEEEEEeCC-CceEEEEEEeCCCcCC
Q 045058          598 LELGILNAVGLHPMKTRDGRGTSDTYCVAKYGHK---WVRTRTLVDNLSPKYNEQYTWEVFDP-ATVLTVGVFDNSQLGE  673 (1005)
Q Consensus       598 l~v~i~~a~~L~~~~~~~~~~~~dpyv~~~~g~~---~~~T~~~~~t~nP~wne~f~~~v~~~-~~~l~i~v~d~~~~~~  673 (1005)
                      |.+.|++|++|....   ..+..+|||++++++.   ..+|+++.++.||.|||.|.|.+..+ ...|.|+|||++..+ 
T Consensus         2 l~i~i~~~~~l~~~~---~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~i~v~~~~~~~-   77 (101)
T smart00239        2 LTVKIISARNLPKKD---KKGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPPPELAELEIEVYDKDRFG-   77 (101)
T ss_pred             eEEEEEEeeCCCCCC---CCCCCCceEEEEEeCCccceEeeeEecCCCCCcccceEEEEecCcccCEEEEEEEecCCcc-
Confidence            689999999998643   2356899999999764   78999999999999999999999887 889999999997543 


Q ss_pred             CCCCCCCcccEEEEEEcccccCCC
Q 045058          674 KSNGNKDLKIGKVRIRISTLETGR  697 (1005)
Q Consensus       674 ~~~~~~d~~lG~~~i~l~~l~~~~  697 (1005)
                           .+.+||.+.+++.++..+.
T Consensus        78 -----~~~~~G~~~~~l~~~~~~~   96 (101)
T smart00239       78 -----RDDFIGQVTIPLSDLLLGG   96 (101)
T ss_pred             -----CCceeEEEEEEHHHcccCc
Confidence                 6899999999999988765

Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.

>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin

Probab=99.01  E-value=1.9e-09  Score=100.31  Aligned_cols=96  Identities=21%  Similarity=0.267  Sum_probs=78.3

Q ss_pred             EEEEEEEEeecCCCC--CCCC--CCCcEEEEEECC---eEeeccccCCCCC--CceeeEEEEEeccC-------------
Q 045058            5 KLGVQVVGAHNLLPK--DGKG--SSSAFVELYFDG---QRFRTTIKENDLN--PVWNESFYFNISDA-------------   62 (1005)
Q Consensus         5 ~l~V~v~~a~~L~~~--d~~g--~~dpyv~v~~~~---~~~~T~v~~~t~n--P~Wne~f~f~v~~~-------------   62 (1005)
                      .|+|.|..|+|++..  +..|  .+||||++.+.+   .+++|.|.++++|  |.||++|.|++.-.             
T Consensus         1 eLRViIw~~~~v~~~~~~~~g~~~sD~yVK~~L~~~~~~kqkTDVHyrslnG~~~FNwRfvF~~~~~~~~~~~~~~~~~~   80 (133)
T cd08374           1 ELRVIVWNTRDVLNDDTNITGEKMSDIYVKGWLDGLEEDKQKTDVHYRSLDGEGNFNWRFVFPFDYLPAEKKIVVIKKEH   80 (133)
T ss_pred             CEEEEEEECcCCcccccccCCccccCeEEEEEEccCcccccccceEEecCCCCcEEeEEEEEeeecCCccceeEEEeecc
Confidence            389999999996643  3356  499999999975   4799999999999  99999999987541             


Q ss_pred             -------ccccceEEEEEEEeCCCCCCCCcccEEEEEeCCcccCCC
Q 045058           63 -------SKLHYLTLEAYIYNNIGDTNSRSFLGKVCLTGNSFVPLS  101 (1005)
Q Consensus        63 -------~~~~~~~l~v~V~d~~~~~~~d~~lG~~~i~l~~l~~~~  101 (1005)
                             +......|.+.|||.|. ++.|++||++.++|..+....
T Consensus        81 ~~~~~~~e~~~~~~L~lqvwD~D~-~s~dd~iG~~~l~l~~l~~~~  125 (133)
T cd08374          81 FWSLDETEYKIPPKLTLQVWDNDK-FSPDDFLGSLELDLSILPRPA  125 (133)
T ss_pred             ccccCcceEecCcEEEEEEEECcc-cCCCCcceEEEEEhhhccccc
Confidence                   23456789999999965 568999999999999876543

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>PLN02952 phosphoinositide phospholipase C

Probab=98.98  E-value=5.2e-09  Score=120.53  Aligned_cols=120  Identities=23%  Similarity=0.285  Sum_probs=92.6

Q ss_pred             ceEEEEEEEEecCCCCCCC---CCCCCCCCcEEEEEE-C----CEEEEeeeccCCCCceeccEEEEEEeCC-CceEEEEE
Q 045058          595 IGILELGILNAVGLHPMKT---RDGRGTSDTYCVAKY-G----HKWVRTRTLVDNLSPKYNEQYTWEVFDP-ATVLTVGV  665 (1005)
Q Consensus       595 ~g~l~v~i~~a~~L~~~~~---~~~~~~~dpyv~~~~-g----~~~~~T~~~~~t~nP~wne~f~~~v~~~-~~~l~i~v  665 (1005)
                      ...|+|+|+.|++|+....   .+.....||||+|.+ |    ....+|+++.++.||+|||+|.|++..| -..|.|.|
T Consensus       469 ~~~L~V~VisGq~l~lp~~~~~~~~~~~~D~yV~V~i~G~p~D~~~~kTkvi~nN~nPvWnE~F~F~i~~PELAllrf~V  548 (599)
T PLN02952        469 KKTLKVKVYLGDGWRLDFSHTHFDSYSPPDFYTKMYIVGVPADNAKKKTKIIEDNWYPAWNEEFSFPLTVPELALLRIEV  548 (599)
T ss_pred             cceEEEEEEECcccCCCCccccCCccCCCCceEEEEEeccCCCCcceeeeeccCCCCcccCCeeEEEEEcCCccEEEEEE
Confidence            4689999999999863211   122234599999988 3    3467999999999999999999999876 46899999


Q ss_pred             EeCCCcCCCCCCCCCcccEEEEEEcccccCCCEEeeeEeeeecCCCCCceeeEEEEEEEEe
Q 045058          666 FDNSQLGEKSNGNKDLKIGKVRIRISTLETGRIYTHSYPLLVLHPTGVKKMGELHLAIRFS  726 (1005)
Q Consensus       666 ~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~G~i~l~~~~~  726 (1005)
                      +|+|..+      .++++|...|||+.|..|.   +|++|....+...   +...|-++|.
T Consensus       549 ~D~D~~~------~ddfiGq~~lPv~~Lr~Gy---R~VpL~~~~G~~l---~~a~Llv~f~  597 (599)
T PLN02952        549 REYDMSE------KDDFGGQTCLPVSELRPGI---RSVPLHDKKGEKL---KNVRLLMRFI  597 (599)
T ss_pred             EecCCCC------CCCeEEEEEcchhHhcCCc---eeEeCcCCCCCCC---CCEEEEEEEE
Confidence            9998655      7999999999999999997   6899974443322   4455555553

>smart00239 C2 Protein kinase C conserved region 2 (CalB)

Probab=98.98  E-value=4.5e-09  Score=94.76  Aligned_cols=90  Identities=34%  Similarity=0.610  Sum_probs=79.7

Q ss_pred             EEEEEEEeecCCCCCCCCCCCcEEEEEECCe---eeeeeeecCCCCCeeeeEEEEeecCCCCcEEEEEEEeCC-CCCCce
Q 045058          272 LYVRVVKARELPAMDLTGSIDPFVEVKIGNY---KGITKHYEKNQNPQWHQVFAFSRDRMQASVLEVVIKDKD-LVKDDF  347 (1005)
Q Consensus       272 L~V~v~~a~~L~~~~~~g~~dPyv~v~~~~~---~~kT~~~~~~~nP~wne~f~f~~~~~~~~~l~v~V~d~~-~~~d~~  347 (1005)
                      |.|+|++|++|......+..+|||++++.+.   ..+|+++.++.||.|||.|.|.+.......|.|+|||.+ .+.+.+
T Consensus         2 l~i~i~~~~~l~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~i~v~~~~~~~~~~~   81 (101)
T smart00239        2 LTVKIISARNLPKKDKKGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPPPELAELEIEVYDKDRFGRDDF   81 (101)
T ss_pred             eEEEEEEeeCCCCCCCCCCCCceEEEEEeCCccceEeeeEecCCCCCcccceEEEEecCcccCEEEEEEEecCCccCCce
Confidence            6799999999998776678899999999875   689999999999999999999988775689999999998 557999


Q ss_pred             eEEEEEEceecCCC
Q 045058          348 VGIVRFDINEVPLR  361 (1005)
Q Consensus       348 lG~~~i~l~~l~~~  361 (1005)
                      +|.+.+++.++..+
T Consensus        82 ~G~~~~~l~~~~~~   95 (101)
T smart00239       82 IGQVTIPLSDLLLG   95 (101)
T ss_pred             eEEEEEEHHHcccC
Confidence            99999999988754

Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.

>KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]

Probab=98.97  E-value=2.2e-09  Score=116.34  Aligned_cols=120  Identities=24%  Similarity=0.434  Sum_probs=101.4

Q ss_pred             eEEEEEEEEecCCCCCCCCCCCCCCCcEEEEEECCEEEEeeeccCCCCceec-cEEEEEEeCC---CceEEEEEEeCCCc
Q 045058          596 GILELGILNAVGLHPMKTRDGRGTSDTYCVAKYGHKWVRTRTLVDNLSPKYN-EQYTWEVFDP---ATVLTVGVFDNSQL  671 (1005)
Q Consensus       596 g~l~v~i~~a~~L~~~~~~~~~~~~dpyv~~~~g~~~~~T~~~~~t~nP~wn-e~f~~~v~~~---~~~l~i~v~d~~~~  671 (1005)
                      |.|.|+|..|++|+.||.  ....+|.||.+++++..++|.+..+++||.|| +=|.|+|.|.   ...|+|.++|+|..
T Consensus         3 gkl~vki~a~r~lpvmdk--asd~tdafveik~~n~t~ktdvf~kslnp~wnsdwfkfevddadlqdeplqi~lld~dty   80 (1169)
T KOG1031|consen    3 GKLGVKIKAARHLPVMDK--ASDLTDAFVEIKFANTTFKTDVFLKSLNPQWNSDWFKFEVDDADLQDEPLQIRLLDHDTY   80 (1169)
T ss_pred             CcceeEEEeccCCccccc--ccccchheeEEEecccceehhhhhhhcCCcccccceEEecChhhhccCCeeEEEeccccc
Confidence            789999999999999984  24567999999999999999999999999999 5688999863   57999999999987


Q ss_pred             CCCCCCCCCcccEEEEEEcccccC----------CCEEeeeEeeeecCCCCCceeeEEEEEEEEe
Q 045058          672 GEKSNGNKDLKIGKVRIRISTLET----------GRIYTHSYPLLVLHPTGVKKMGELHLAIRFS  726 (1005)
Q Consensus       672 ~~~~~~~~d~~lG~~~i~l~~l~~----------~~~~~~~~~L~~~~~~~~~~~G~i~l~~~~~  726 (1005)
                      +      .+|-||++.|++..|.-          |.....|||+...-. |  -+|+|.+-+++.
T Consensus        81 s------andaigkv~i~idpl~~e~aaqavhgkgtvisgw~pifdtih-g--irgeinvivkvd  136 (1169)
T KOG1031|consen   81 S------ANDAIGKVNIDIDPLCLEEAAQAVHGKGTVISGWFPIFDTIH-G--IRGEINVIVKVD  136 (1169)
T ss_pred             c------cccccceeeeccChHHHHhHHhhhcCCceEEeeeeecceecc-c--ccceeEEEEEEe
Confidence            7      89999999999988753          346789999974332 2  249999888864

>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae

Probab=98.95  E-value=2.8e-09  Score=92.21  Aligned_cols=87  Identities=21%  Similarity=0.351  Sum_probs=73.2

Q ss_pred             EEEEEEEecCCCCCCCCCCCCCCCcEEEEEECCE-EEEeeeccCCCCceeccEEEEEEeCCCceEEEEEEeCCCcCCCCC
Q 045058          598 LELGILNAVGLHPMKTRDGRGTSDTYCVAKYGHK-WVRTRTLVDNLSPKYNEQYTWEVFDPATVLTVGVFDNSQLGEKSN  676 (1005)
Q Consensus       598 l~v~i~~a~~L~~~~~~~~~~~~dpyv~~~~g~~-~~~T~~~~~t~nP~wne~f~~~v~~~~~~l~i~v~d~~~~~~~~~  676 (1005)
                      |+|+|..|+|+.........+++||||++++++. ++||++   +.||.|||.|.|+| +....+.|.|||..       
T Consensus         1 L~I~V~~~RdvdH~~~~~~~~~~etyV~IKved~~kaRTr~---srnd~WnE~F~i~V-dk~nEiel~VyDk~-------   69 (109)
T cd08689           1 LTITITSARDVDHIASPRFSKRPETYVSIKVEDVERARTKP---SRNDRWNEDFEIPV-EKNNEEEVIVYDKG-------   69 (109)
T ss_pred             CEEEEEEEecCccccchhhccCCCcEEEEEECCEEEEeccC---CCCCcccceEEEEe-cCCcEEEEEEEeCC-------
Confidence            6789999999997653335778999999999887 789998   58999999999999 66889999999984       


Q ss_pred             CCCCcccEEEEEEcccccC
Q 045058          677 GNKDLKIGKVRIRISTLET  695 (1005)
Q Consensus       677 ~~~d~~lG~~~i~l~~l~~  695 (1005)
                      ++..-.||-.-|.|++|..
T Consensus        70 ~~~~~Pi~llW~~~sdi~E   88 (109)
T cd08689          70 GDQPVPVGLLWLRLSDIAE   88 (109)
T ss_pred             CCeecceeeehhhHHHHHH
Confidence            3356789999999998753

This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that

>PLN02952 phosphoinositide phospholipase C

Probab=98.93  E-value=7.8e-09  Score=119.11  Aligned_cols=117  Identities=21%  Similarity=0.286  Sum_probs=89.0

Q ss_pred             cEEEEEEEEeecCCCC------CCCCCCCcEEEEEECC-----eEeeccccCCCCCCceeeEEEEEeccCccccceEEEE
Q 045058            4 LKLGVQVVGAHNLLPK------DGKGSSSAFVELYFDG-----QRFRTTIKENDLNPVWNESFYFNISDASKLHYLTLEA   72 (1005)
Q Consensus         4 ~~l~V~v~~a~~L~~~------d~~g~~dpyv~v~~~~-----~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v   72 (1005)
                      ..|.|+|++|.+++..      +.....||||+|.+-|     .+.+|+++.++.||+|||+|.|.+..++   -..|.|
T Consensus       470 ~~L~V~VisGq~l~lp~~~~~~~~~~~~D~yV~V~i~G~p~D~~~~kTkvi~nN~nPvWnE~F~F~i~~PE---LAllrf  546 (599)
T PLN02952        470 KTLKVKVYLGDGWRLDFSHTHFDSYSPPDFYTKMYIVGVPADNAKKKTKIIEDNWYPAWNEEFSFPLTVPE---LALLRI  546 (599)
T ss_pred             ceEEEEEEECcccCCCCccccCCccCCCCceEEEEEeccCCCCcceeeeeccCCCCcccCCeeEEEEEcCC---ccEEEE
Confidence            5799999999997531      1123359999999854     4789999999999999999999987765   257899


Q ss_pred             EEEeCCCCCCCCcccEEEEEeCCcccCCCCceeeeEecccCCCcceeeeEEEEEEE
Q 045058           73 YIYNNIGDTNSRSFLGKVCLTGNSFVPLSDSVVLHYPLEKRGIFSHVRGELGLKVY  128 (1005)
Q Consensus        73 ~V~d~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~  128 (1005)
                      .|+|+|. .+.|+|+|++.+++..|..+-    .|++|....+.....-.+.+++.
T Consensus       547 ~V~D~D~-~~~ddfiGq~~lPv~~Lr~Gy----R~VpL~~~~G~~l~~a~Llv~f~  597 (599)
T PLN02952        547 EVREYDM-SEKDDFGGQTCLPVSELRPGI----RSVPLHDKKGEKLKNVRLLMRFI  597 (599)
T ss_pred             EEEecCC-CCCCCeEEEEEcchhHhcCCc----eeEeCcCCCCCCCCCEEEEEEEE
Confidence            9999854 458999999999999987754    48999866554333334445443

>KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]

Probab=98.91  E-value=4.2e-09  Score=114.19  Aligned_cols=121  Identities=27%  Similarity=0.416  Sum_probs=100.5

Q ss_pred             cEEEEEEEEeecCCCCCCC-CCCCcEEEEEECCeEeeccccCCCCCCcee-eEEEEEeccCccccceEEEEEEEeCCCCC
Q 045058            4 LKLGVQVVGAHNLLPKDGK-GSSSAFVELYFDGQRFRTTIKENDLNPVWN-ESFYFNISDASKLHYLTLEAYIYNNIGDT   81 (1005)
Q Consensus         4 ~~l~V~v~~a~~L~~~d~~-g~~dpyv~v~~~~~~~~T~v~~~t~nP~Wn-e~f~f~v~~~~~~~~~~l~v~V~d~~~~~   81 (1005)
                      ++|.|+|..||+|+.+|+. ...|.||+|.+.+..+||.|..+++||.|| ++|.|++.+.+ ++...|.|++.|+| ..
T Consensus         3 gkl~vki~a~r~lpvmdkasd~tdafveik~~n~t~ktdvf~kslnp~wnsdwfkfevddad-lqdeplqi~lld~d-ty   80 (1169)
T KOG1031|consen    3 GKLGVKIKAARHLPVMDKASDLTDAFVEIKFANTTFKTDVFLKSLNPQWNSDWFKFEVDDAD-LQDEPLQIRLLDHD-TY   80 (1169)
T ss_pred             CcceeEEEeccCCcccccccccchheeEEEecccceehhhhhhhcCCcccccceEEecChhh-hccCCeeEEEeccc-cc
Confidence            6789999999999999875 457999999999999999999999999998 78999998765 88899999999995 45


Q ss_pred             CCCcccEEEEEeCCcccC---------CCCceeeeEecccCCCcceeeeEEEEEEE
Q 045058           82 NSRSFLGKVCLTGNSFVP---------LSDSVVLHYPLEKRGIFSHVRGELGLKVY  128 (1005)
Q Consensus        82 ~~d~~lG~~~i~l~~l~~---------~~~~~~~w~~L~~~~~~~~~~G~i~l~~~  128 (1005)
                      +.++-||.+.|++..|..         .+.....|+|+-+.-.  .++|+|.+-+.
T Consensus        81 sandaigkv~i~idpl~~e~aaqavhgkgtvisgw~pifdtih--girgeinvivk  134 (1169)
T KOG1031|consen   81 SANDAIGKVNIDIDPLCLEEAAQAVHGKGTVISGWFPIFDTIH--GIRGEINVIVK  134 (1169)
T ss_pred             ccccccceeeeccChHHHHhHHhhhcCCceEEeeeeecceecc--cccceeEEEEE
Confidence            689999999999977622         2233457999877643  46888876553

>PLN02230 phosphoinositide phospholipase C 4

Probab=98.89  E-value=1.2e-08  Score=117.38  Aligned_cols=118  Identities=20%  Similarity=0.256  Sum_probs=90.5

Q ss_pred             cEEEEEEEEeecCCCC------CCCCCCCcEEEEEECC-----eEeeccccCCCCCCceeeEEEEEeccCccccceEEEE
Q 045058            4 LKLGVQVVGAHNLLPK------DGKGSSSAFVELYFDG-----QRFRTTIKENDLNPVWNESFYFNISDASKLHYLTLEA   72 (1005)
Q Consensus         4 ~~l~V~v~~a~~L~~~------d~~g~~dpyv~v~~~~-----~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v   72 (1005)
                      ..|.|+|+++.++...      +.....||||+|.+-|     .+.+|++..++.||+|||+|.|.+.-++   -..|.|
T Consensus       469 ~~L~V~VisGq~~~l~~~k~~~~~~s~~DpyV~Vei~Gvp~D~~~~kT~v~~n~~nP~Wneef~F~l~vPE---LAllRf  545 (598)
T PLN02230        469 KTLKVKVCMGDGWLLDFKKTHFDSYSPPDFFVRVGIAGAPVDEVMEKTKIEYDTWTPIWNKEFIFPLAVPE---LALLRV  545 (598)
T ss_pred             cEEEEEEEEccCccCCCccccCCCCCCCCceEEEEEEECCCCCcccceeccCCCCCCccCCeeEEEEEcCc---eeEEEE
Confidence            5799999999987421      2234579999999854     3578999999999999999999987766   368999


Q ss_pred             EEEeCCCCCCCCcccEEEEEeCCcccCCCCceeeeEecccCCCcceeeeEEEEEEEE
Q 045058           73 YIYNNIGDTNSRSFLGKVCLTGNSFVPLSDSVVLHYPLEKRGIFSHVRGELGLKVYI  129 (1005)
Q Consensus        73 ~V~d~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~  129 (1005)
                      .|+|+| ...+|+|+|++.+|+..|..+-    ...+|..+.+..-..-.|.+++.+
T Consensus       546 ~V~d~d-~~~~ddfiGQ~~lPv~~Lr~Gy----R~V~L~~~~G~~l~~~~Ll~~f~~  597 (598)
T PLN02230        546 EVHEHD-INEKDDFGGQTCLPVSEIRQGI----HAVPLFNRKGVKYSSTRLLMRFEF  597 (598)
T ss_pred             EEEECC-CCCCCCEEEEEEcchHHhhCcc----ceEeccCCCcCCCCCCeeEEEEEe
Confidence            999985 4458999999999999987754    357887775543333456666544

>PLN02228 Phosphoinositide phospholipase C

Probab=98.89  E-value=1.7e-08  Score=115.66  Aligned_cols=125  Identities=18%  Similarity=0.186  Sum_probs=96.3

Q ss_pred             ceEEEEEEEEecCCCC---CCCCCCCCCCCcEEEEEEC-----CEEEEeeeccCCCCcee-ccEEEEEEeCC-CceEEEE
Q 045058          595 IGILELGILNAVGLHP---MKTRDGRGTSDTYCVAKYG-----HKWVRTRTLVDNLSPKY-NEQYTWEVFDP-ATVLTVG  664 (1005)
Q Consensus       595 ~g~l~v~i~~a~~L~~---~~~~~~~~~~dpyv~~~~g-----~~~~~T~~~~~t~nP~w-ne~f~~~v~~~-~~~l~i~  664 (1005)
                      ...|+|+|+.|++|+.   .+..+.....||||+|.+-     ...+||+++.++.||+| ||.|.|.+..| -..|.|.
T Consensus       430 ~~~L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei~G~p~D~~~~rTk~~~n~~nP~W~~e~f~F~~~~pELA~lRf~  509 (567)
T PLN02228        430 KTTLKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGIAGVPRDTVSYRTETAVDQWFPIWGNDEFLFQLRVPELALLWFK  509 (567)
T ss_pred             CceEEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEEEecCCCCCcceeeccCCCCCceECCCeEEEEEEcCceeEEEEE
Confidence            3579999999999742   1111223447999999882     34579999999899999 99999999886 4799999


Q ss_pred             EEeCCCcCCCCCCCCCcccEEEEEEcccccCCCEEeeeEeeeecCCCCCceeeEEEEEEEEeecc
Q 045058          665 VFDNSQLGEKSNGNKDLKIGKVRIRISTLETGRIYTHSYPLLVLHPTGVKKMGELHLAIRFSCTS  729 (1005)
Q Consensus       665 v~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~G~i~l~~~~~~~~  729 (1005)
                      |+|+|..+      .++++|...||++.|..|-   +..+|.+..+.... ..+|.+.+.+....
T Consensus       510 V~D~d~~~------~d~figq~~lPv~~Lr~GY---R~VpL~~~~G~~l~-~atLfv~~~~~~~~  564 (567)
T PLN02228        510 VQDYDNDT------QNDFAGQTCLPLPELKSGV---RAVRLHDRAGKAYK-NTRLLVSFALDPPY  564 (567)
T ss_pred             EEeCCCCC------CCCEEEEEEcchhHhhCCe---eEEEccCCCCCCCC-CeEEEEEEEEcCcc
Confidence            99998655      7899999999999999886   67788755543332 36788888876543

>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae

Probab=98.88  E-value=6.6e-09  Score=89.93  Aligned_cols=83  Identities=18%  Similarity=0.251  Sum_probs=67.9

Q ss_pred             EEEEEEEeecCCCCC---CCCCCCcEEEEEECCe-EeeccccCCCCCCceeeEEEEEeccCccccceEEEEEEEeCCCCC
Q 045058            6 LGVQVVGAHNLLPKD---GKGSSSAFVELYFDGQ-RFRTTIKENDLNPVWNESFYFNISDASKLHYLTLEAYIYNNIGDT   81 (1005)
Q Consensus         6 l~V~v~~a~~L~~~d---~~g~~dpyv~v~~~~~-~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~~~   81 (1005)
                      |.|+|++|+|+...+   ..+.+||||.+.+++. +.||+.   +.||.|||+|.|++...     ..+++.|||+.  .
T Consensus         1 L~I~V~~~RdvdH~~~~~~~~~~etyV~IKved~~kaRTr~---srnd~WnE~F~i~Vdk~-----nEiel~VyDk~--~   70 (109)
T cd08689           1 LTITITSARDVDHIASPRFSKRPETYVSIKVEDVERARTKP---SRNDRWNEDFEIPVEKN-----NEEEVIVYDKG--G   70 (109)
T ss_pred             CEEEEEEEecCccccchhhccCCCcEEEEEECCEEEEeccC---CCCCcccceEEEEecCC-----cEEEEEEEeCC--C
Confidence            689999999998877   5678999999999986 899987   48999999999999432     48999999973  3


Q ss_pred             CCCcccEEEEEeCCccc
Q 045058           82 NSRSFLGKVCLTGNSFV   98 (1005)
Q Consensus        82 ~~d~~lG~~~i~l~~l~   98 (1005)
                      ...--||..-+.++++.
T Consensus        71 ~~~~Pi~llW~~~sdi~   87 (109)
T cd08689          71 DQPVPVGLLWLRLSDIA   87 (109)
T ss_pred             CeecceeeehhhHHHHH
Confidence            34567777777776653

This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that

>PLN02270 phospholipase D alpha

Probab=98.87  E-value=2e-08  Score=117.75  Aligned_cols=122  Identities=16%  Similarity=0.280  Sum_probs=102.4

Q ss_pred             eEEEEEEEEeecCCCCC------------------CCCCCCcEEEEEECCee-eeeeeecCC-CCCeeeeEEEEeecCCC
Q 045058          270 YFLYVRVVKARELPAMD------------------LTGSIDPFVEVKIGNYK-GITKHYEKN-QNPQWHQVFAFSRDRMQ  329 (1005)
Q Consensus       270 ~~L~V~v~~a~~L~~~~------------------~~g~~dPyv~v~~~~~~-~kT~~~~~~-~nP~wne~f~f~~~~~~  329 (1005)
                      |.|.|+|.+|++|+..+                  ..+.+||||.|.+++.+ .||+++.+. .||.|+|.|.+.+....
T Consensus         8 g~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~a~v~rtr~~~~~~~~p~w~e~f~i~~ah~~   87 (808)
T PLN02270          8 GTLHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDLEKARVGRTRKIENEPKNPRWYESFHIYCAHMA   87 (808)
T ss_pred             cceEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEeCCcEEEEEeecCCCCCCCccccceEEeeccCc
Confidence            67999999999998631                  13578999999999865 599999884 69999999999998776


Q ss_pred             CcEEEEEEEeCCCCCCceeEEEEEEceecCCCCCCCCCCCCeEEEeecCCCCccc--eEEEEEEEEeccC
Q 045058          330 ASVLEVVIKDKDLVKDDFVGIVRFDINEVPLRVPPDSPLAPEWYRLEDKKGEKIK--GELMLAVWIGTQA  397 (1005)
Q Consensus       330 ~~~l~v~V~d~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~--G~i~l~~~~~~~~  397 (1005)
                       ..|.|+|+|.+..+..+||.+.|++.++..+     .....|+++.+..++...  ..|+++++|.+..
T Consensus        88 -~~v~f~vkd~~~~g~~~ig~~~~p~~~~~~g-----~~i~~~~~~~~~~~~p~~~~~~~~~~~~f~~~~  151 (808)
T PLN02270         88 -SNIIFTVKDDNPIGATLIGRAYIPVEEILDG-----EEVDRWVEILDNDKNPIHGGSKIHVKLQYFEVT  151 (808)
T ss_pred             -ceEEEEEecCCccCceEEEEEEEEHHHhcCC-----CccccEEeccCCCCCcCCCCCEEEEEEEEEEcc
Confidence             5899999999976778999999999999876     358899999998766533  3899999998743

>PLN02230 phosphoinositide phospholipase C 4

Probab=98.86  E-value=1.7e-08  Score=116.10  Aligned_cols=121  Identities=19%  Similarity=0.261  Sum_probs=91.9

Q ss_pred             ceEEEEEEEEecCCCCCCCC---CCCCCCCcEEEEEE-C----CEEEEeeeccCCCCceeccEEEEEEeCC-CceEEEEE
Q 045058          595 IGILELGILNAVGLHPMKTR---DGRGTSDTYCVAKY-G----HKWVRTRTLVDNLSPKYNEQYTWEVFDP-ATVLTVGV  665 (1005)
Q Consensus       595 ~g~l~v~i~~a~~L~~~~~~---~~~~~~dpyv~~~~-g----~~~~~T~~~~~t~nP~wne~f~~~v~~~-~~~l~i~v  665 (1005)
                      ...|.|+|+.+++++....+   +.....||||+|.+ |    ....+|+++.++.||+|||+|.|++.-| -+.|.|.|
T Consensus       468 ~~~L~V~VisGq~~~l~~~k~~~~~~s~~DpyV~Vei~Gvp~D~~~~kT~v~~n~~nP~Wneef~F~l~vPELAllRf~V  547 (598)
T PLN02230        468 KKTLKVKVCMGDGWLLDFKKTHFDSYSPPDFFVRVGIAGAPVDEVMEKTKIEYDTWTPIWNKEFIFPLAVPELALLRVEV  547 (598)
T ss_pred             CcEEEEEEEEccCccCCCccccCCCCCCCCceEEEEEEECCCCCcccceeccCCCCCCccCCeeEEEEEcCceeEEEEEE
Confidence            46799999999997532111   22334699999998 2    2346899888999999999999999887 57999999


Q ss_pred             EeCCCcCCCCCCCCCcccEEEEEEcccccCCCEEeeeEeeeecCCCCCceeeEEEEEEEE
Q 045058          666 FDNSQLGEKSNGNKDLKIGKVRIRISTLETGRIYTHSYPLLVLHPTGVKKMGELHLAIRF  725 (1005)
Q Consensus       666 ~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~G~i~l~~~~  725 (1005)
                      +|+|...      +|+|+|...||++.|..|-   +..+|....+.... .-.|.+++.|
T Consensus       548 ~d~d~~~------~ddfiGQ~~lPv~~Lr~Gy---R~V~L~~~~G~~l~-~~~Ll~~f~~  597 (598)
T PLN02230        548 HEHDINE------KDDFGGQTCLPVSEIRQGI---HAVPLFNRKGVKYS-STRLLMRFEF  597 (598)
T ss_pred             EECCCCC------CCCEEEEEEcchHHhhCcc---ceEeccCCCcCCCC-CCeeEEEEEe
Confidence            9998654      8999999999999999996   57788754443322 2455555544

>PLN02222 phosphoinositide phospholipase C 2

Probab=98.86  E-value=2.6e-08  Score=114.41  Aligned_cols=121  Identities=21%  Similarity=0.253  Sum_probs=91.8

Q ss_pred             ceEEEEEEEEecCCCC--CC-CCCCCCCCCcEEEEEEC-----CEEEEeeeccCCCCceeccEEEEEEeCC-CceEEEEE
Q 045058          595 IGILELGILNAVGLHP--MK-TRDGRGTSDTYCVAKYG-----HKWVRTRTLVDNLSPKYNEQYTWEVFDP-ATVLTVGV  665 (1005)
Q Consensus       595 ~g~l~v~i~~a~~L~~--~~-~~~~~~~~dpyv~~~~g-----~~~~~T~~~~~t~nP~wne~f~~~v~~~-~~~l~i~v  665 (1005)
                      ...|+|+|+.+++++.  .+ ..+.....||||+|.+-     ....||+++.++.||+|||.|+|.+..| -..|.|.|
T Consensus       451 ~~~L~V~Visgq~~~l~~~~~~~~~~~~~dpyV~Vei~G~p~D~~~~rTk~v~nn~nP~W~e~f~F~i~~PeLAllRf~V  530 (581)
T PLN02222        451 KTTLRVTIYMGEGWYFDFRHTHFDQYSPPDFYTRVGIAGVPGDTVMKKTKTLEDNWIPAWDEVFEFPLTVPELALLRLEV  530 (581)
T ss_pred             cceEEEEEEEcccccCCCCccccCCCCCCCeeEEEEEeccCCCcceeeeEecCCCCCcccCCeeEEEEEcCceeEEEEEE
Confidence            4689999999998531  11 11223457999999983     3457999999999999999999999876 47999999


Q ss_pred             EeCCCcCCCCCCCCCcccEEEEEEcccccCCCEEeeeEeeeecCCCCCceeeEEEEEEEE
Q 045058          666 FDNSQLGEKSNGNKDLKIGKVRIRISTLETGRIYTHSYPLLVLHPTGVKKMGELHLAIRF  725 (1005)
Q Consensus       666 ~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~G~i~l~~~~  725 (1005)
                      +|+|...      .+++||...||++.|..|-   +..+|....+.... ...|.+.+.|
T Consensus       531 ~d~D~~~------~ddfigq~~lPv~~Lr~Gy---R~V~L~~~~g~~l~-~a~Lfv~~~~  580 (581)
T PLN02222        531 HEYDMSE------KDDFGGQTCLPVWELSQGI---RAFPLHSRKGEKYK-SVKLLVKVEF  580 (581)
T ss_pred             EECCCCC------CCcEEEEEEcchhhhhCcc---ceEEccCCCcCCCC-CeeEEEEEEe
Confidence            9998654      7999999999999999996   67788755443322 2455555554

>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]

Probab=98.85  E-value=1.2e-08  Score=116.59  Aligned_cols=119  Identities=22%  Similarity=0.326  Sum_probs=95.2

Q ss_pred             EEEEEEEEeecCCCCCC----CCCCCcEEEEEECCe-----Eeecc-ccCCCCCCceeeEEEEEeccCccccceEEEEEE
Q 045058            5 KLGVQVVGAHNLLPKDG----KGSSSAFVELYFDGQ-----RFRTT-IKENDLNPVWNESFYFNISDASKLHYLTLEAYI   74 (1005)
Q Consensus         5 ~l~V~v~~a~~L~~~d~----~g~~dpyv~v~~~~~-----~~~T~-v~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V   74 (1005)
                      .|.|+|+++.++...-.    ...+||||.|++-|.     +.+|+ +..|+.||.|+|+|+|.+..++-   ..|.|.|
T Consensus       617 tL~IkI~sGq~~~~~~~~~~~~~~~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~vPEL---AliRF~V  693 (746)
T KOG0169|consen  617 TLKIKIISGQGWLPDFGKTKFGEISDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQLSVPEL---ALIRFEV  693 (746)
T ss_pred             eeEEEEEecCcccCCCCCCcccccCCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEEEeccce---eEEEEEE
Confidence            59999999997764322    246899999998663     68999 77899999999999999988873   6899999


Q ss_pred             EeCCCCCCCCcccEEEEEeCCcccCCCCceeeeEecccCCCcceeeeEEEEEEEEec
Q 045058           75 YNNIGDTNSRSFLGKVCLTGNSFVPLSDSVVLHYPLEKRGIFSHVRGELGLKVYITD  131 (1005)
Q Consensus        75 ~d~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~~~  131 (1005)
                      +|+| ..++|+|+|++.+|+..|..+-.    .++|..+.+..-..-.|-+++.+.+
T Consensus       694 ~d~d-~~~~ddF~GQ~tlP~~~L~~GyR----hVpL~~~~G~~~~~asLfv~i~~~~  745 (746)
T KOG0169|consen  694 HDYD-YIGKDDFIGQTTLPVSELRQGYR----HVPLLSREGEALSSASLFVRIAIVE  745 (746)
T ss_pred             EecC-CCCcccccceeeccHHHhhCcee----eeeecCCCCccccceeEEEEEEEec
Confidence            9995 55689999999999999877543    4788877665556677777776653

>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

Probab=98.84  E-value=7e-10  Score=123.44  Aligned_cols=124  Identities=27%  Similarity=0.547  Sum_probs=105.0

Q ss_pred             cceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-------------e------------------eeeeeeecCCCCC
Q 045058          267 ERMYFLYVRVVKARELPAMDLTGSIDPFVEVKIGN-------------Y------------------KGITKHYEKNQNP  315 (1005)
Q Consensus       267 ~~~~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~~-------------~------------------~~kT~~~~~~~nP  315 (1005)
                      .|...+.|.+.+|+||..++.+|.+|||+...+..             +                  ..-|.+.++|+||
T Consensus       111 ~P~~~l~is~~~ak~l~akd~ngfSdP~~m~g~~p~~~~~~~pra~~eqrdgl~~~~~~~GpiPAKlIkatsvk~~TLnP  190 (1103)
T KOG1328|consen  111 PPSVLLNISLLEAKDLIAKDVNGFSDPFAMMGVVPGTRKENSPRALHEQRDGLMHRFQDTGPIPAKLIKATSVKKKTLNP  190 (1103)
T ss_pred             CCcHHHHHHHHHhcCccccCCCCCCChhhhhccccccccccChhhhhhhhhhhhhccccCCCCcHHHhhhcccccccCCc
Confidence            34566889999999999999999999999976532             0                  0147788889999


Q ss_pred             eeeeEEEEeecCCCCcEEEEEEEeCCC----------------------------------C---CCceeEEEEEEceec
Q 045058          316 QWHQVFAFSRDRMQASVLEVVIKDKDL----------------------------------V---KDDFVGIVRFDINEV  358 (1005)
Q Consensus       316 ~wne~f~f~~~~~~~~~l~v~V~d~~~----------------------------------~---~d~~lG~~~i~l~~l  358 (1005)
                      .|+|.|.|.+++.+.+.+++.+||+|.                                  +   .|||||.+.|+|.++
T Consensus       191 kW~EkF~F~IeDv~tDqfHlDIWDHDDe~sv~dAvs~LNeV~G~kG~GRyFKqv~qSARans~d~tDDFLGciNipl~Ei  270 (1103)
T KOG1328|consen  191 KWSEKFQFTIEDVQTDQFHLDIWDHDDEESVLDAVSSLNEVTGFKGIGRYFKQVTQSARANSDDCTDDFLGCINIPLAEI  270 (1103)
T ss_pred             chhhheeeehhccccceeeeecccCCccHHHHHHHHHHhhhhcchhHHHHHHHHHHHHhcCCCccccccccccccchhcC
Confidence            999999999999999999999999851                                  2   389999999999999


Q ss_pred             CCCCCCCCCCCCeEEEeecCCCCc-cceEEEEEEEEecc
Q 045058          359 PLRVPPDSPLAPEWYRLEDKKGEK-IKGELMLAVWIGTQ  396 (1005)
Q Consensus       359 ~~~~~~~~~~~~~w~~L~~~~~~~-~~G~i~l~~~~~~~  396 (1005)
                      ..      .+.++||+|+..+..+ +.|.+++.+|..+.
T Consensus       271 P~------~Gld~WFkLepRS~~S~VqG~~~LklwLsT~  303 (1103)
T KOG1328|consen  271 PP------DGLDQWFKLEPRSDKSKVQGQVKLKLWLSTK  303 (1103)
T ss_pred             Cc------chHHHHhccCcccccccccceEEEEEEEeee
Confidence            75      3689999999988765 89999999999763

>PLN02222 phosphoinositide phospholipase C 2

Probab=98.79  E-value=5e-08  Score=112.16  Aligned_cols=117  Identities=19%  Similarity=0.206  Sum_probs=88.6

Q ss_pred             cEEEEEEEEeecCC---CC---CCCCCCCcEEEEEECC-----eEeeccccCCCCCCceeeEEEEEeccCccccceEEEE
Q 045058            4 LKLGVQVVGAHNLL---PK---DGKGSSSAFVELYFDG-----QRFRTTIKENDLNPVWNESFYFNISDASKLHYLTLEA   72 (1005)
Q Consensus         4 ~~l~V~v~~a~~L~---~~---d~~g~~dpyv~v~~~~-----~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v   72 (1005)
                      ..|.|+|+++.++.   ++   +.....||||+|.+.|     .+.+|+++.++.||+|||+|.|.+..++   -..|.|
T Consensus       452 ~~L~V~Visgq~~~l~~~~~~~~~~~~~dpyV~Vei~G~p~D~~~~rTk~v~nn~nP~W~e~f~F~i~~Pe---LAllRf  528 (581)
T PLN02222        452 TTLRVTIYMGEGWYFDFRHTHFDQYSPPDFYTRVGIAGVPGDTVMKKTKTLEDNWIPAWDEVFEFPLTVPE---LALLRL  528 (581)
T ss_pred             ceEEEEEEEcccccCCCCccccCCCCCCCeeEEEEEeccCCCcceeeeEecCCCCCcccCCeeEEEEEcCc---eeEEEE
Confidence            47999999999853   11   2234579999999854     3689999999899999999999987666   368999


Q ss_pred             EEEeCCCCCCCCcccEEEEEeCCcccCCCCceeeeEecccCCCcceeeeEEEEEEE
Q 045058           73 YIYNNIGDTNSRSFLGKVCLTGNSFVPLSDSVVLHYPLEKRGIFSHVRGELGLKVY  128 (1005)
Q Consensus        73 ~V~d~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~  128 (1005)
                      .|+|+|. ..+|+|+|++.+|+..|..+-    ..++|..+.+..-..-.+.+.+.
T Consensus       529 ~V~d~D~-~~~ddfigq~~lPv~~Lr~Gy----R~V~L~~~~g~~l~~a~Lfv~~~  579 (581)
T PLN02222        529 EVHEYDM-SEKDDFGGQTCLPVWELSQGI----RAFPLHSRKGEKYKSVKLLVKVE  579 (581)
T ss_pred             EEEECCC-CCCCcEEEEEEcchhhhhCcc----ceEEccCCCcCCCCCeeEEEEEE
Confidence            9999854 458999999999999987653    35788777554333345555554

>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]

Probab=98.78  E-value=3.1e-08  Score=113.46  Aligned_cols=120  Identities=21%  Similarity=0.337  Sum_probs=94.2

Q ss_pred             EEEEEEEEecCCCCCCCCC-CCCCCCcEEEEEECC-----EEEEeeecc-CCCCceeccEEEEEEeCC-CceEEEEEEeC
Q 045058          597 ILELGILNAVGLHPMKTRD-GRGTSDTYCVAKYGH-----KWVRTRTLV-DNLSPKYNEQYTWEVFDP-ATVLTVGVFDN  668 (1005)
Q Consensus       597 ~l~v~i~~a~~L~~~~~~~-~~~~~dpyv~~~~g~-----~~~~T~~~~-~t~nP~wne~f~~~v~~~-~~~l~i~v~d~  668 (1005)
                      .|.|+|+.++|+.+...+. .+..+||||.|++-|     ...+|+++. ++.||.|+|+|+|++..| -+-|.+.|+|+
T Consensus       617 tL~IkI~sGq~~~~~~~~~~~~~~~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~vPELAliRF~V~d~  696 (746)
T KOG0169|consen  617 TLKIKIISGQGWLPDFGKTKFGEISDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQLSVPELALIRFEVHDY  696 (746)
T ss_pred             eeEEEEEecCcccCCCCCCcccccCCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEEEeccceeEEEEEEEec
Confidence            7999999999887643322 235689999999843     246999655 679999999999999987 57999999999


Q ss_pred             CCcCCCCCCCCCcccEEEEEEcccccCCCEEeeeEeeeecCCCCCceeeEEEEEEEEe
Q 045058          669 SQLGEKSNGNKDLKIGKVRIRISTLETGRIYTHSYPLLVLHPTGVKKMGELHLAIRFS  726 (1005)
Q Consensus       669 ~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~G~i~l~~~~~  726 (1005)
                      |..+      +|+|+|...||++.|..|-   +-.||.+..+... ...+|.+.+.+.
T Consensus       697 d~~~------~ddF~GQ~tlP~~~L~~Gy---RhVpL~~~~G~~~-~~asLfv~i~~~  744 (746)
T KOG0169|consen  697 DYIG------KDDFIGQTTLPVSELRQGY---RHVPLLSREGEAL-SSASLFVRIAIV  744 (746)
T ss_pred             CCCC------cccccceeeccHHHhhCce---eeeeecCCCCccc-cceeEEEEEEEe
Confidence            9766      8999999999999999986   5678875543333 236777777653

>PLN02228 Phosphoinositide phospholipase C

Probab=98.77  E-value=6.3e-08  Score=111.02  Aligned_cols=120  Identities=17%  Similarity=0.220  Sum_probs=93.3

Q ss_pred             cEEEEEEEEeecCC---CCC---CCCCCCcEEEEEECC-----eEeeccccCCCCCCce-eeEEEEEeccCccccceEEE
Q 045058            4 LKLGVQVVGAHNLL---PKD---GKGSSSAFVELYFDG-----QRFRTTIKENDLNPVW-NESFYFNISDASKLHYLTLE   71 (1005)
Q Consensus         4 ~~l~V~v~~a~~L~---~~d---~~g~~dpyv~v~~~~-----~~~~T~v~~~t~nP~W-ne~f~f~v~~~~~~~~~~l~   71 (1005)
                      ..|.|+|++|.+|.   ..+   .....||||+|.+.|     .+++|+++.++.||+| ||+|.|.+..++   -..|.
T Consensus       431 ~~L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei~G~p~D~~~~rTk~~~n~~nP~W~~e~f~F~~~~pE---LA~lR  507 (567)
T PLN02228        431 TTLKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGIAGVPRDTVSYRTETAVDQWFPIWGNDEFLFQLRVPE---LALLW  507 (567)
T ss_pred             ceEEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEEEecCCCCCcceeeccCCCCCceECCCeEEEEEEcCc---eeEEE
Confidence            46999999999873   112   233479999999854     3679999989999999 999999987766   36899


Q ss_pred             EEEEeCCCCCCCCcccEEEEEeCCcccCCCCceeeeEecccCCCcceeeeEEEEEEEEec
Q 045058           72 AYIYNNIGDTNSRSFLGKVCLTGNSFVPLSDSVVLHYPLEKRGIFSHVRGELGLKVYITD  131 (1005)
Q Consensus        72 v~V~d~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~~~  131 (1005)
                      |.|+|+| ..+.|+|+|++.|++..|..+-    ..++|....+..-...+|.+++.+.+
T Consensus       508 f~V~D~d-~~~~d~figq~~lPv~~Lr~GY----R~VpL~~~~G~~l~~atLfv~~~~~~  562 (567)
T PLN02228        508 FKVQDYD-NDTQNDFAGQTCLPLPELKSGV----RAVRLHDRAGKAYKNTRLLVSFALDP  562 (567)
T ss_pred             EEEEeCC-CCCCCCEEEEEEcchhHhhCCe----eEEEccCCCCCCCCCeEEEEEEEEcC
Confidence            9999985 4558999999999999986643    35788777665445567888887655

>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]

Probab=98.68  E-value=8.7e-08  Score=108.36  Aligned_cols=102  Identities=20%  Similarity=0.308  Sum_probs=84.0

Q ss_pred             ceEEEEEEEEecCCCCCCCCCCCCCCCcEEEEEE-----CCEEEEe-eeccCCCCceec-cEEEEEEeCC-CceEEEEEE
Q 045058          595 IGILELGILNAVGLHPMKTRDGRGTSDTYCVAKY-----GHKWVRT-RTLVDNLSPKYN-EQYTWEVFDP-ATVLTVGVF  666 (1005)
Q Consensus       595 ~g~l~v~i~~a~~L~~~~~~~~~~~~dpyv~~~~-----g~~~~~T-~~~~~t~nP~wn-e~f~~~v~~~-~~~l~i~v~  666 (1005)
                      .-.|.|.|++|+.|+.    .+.|-..|||.|++     +..+++| .++.+++||+|| |.|+|+|.+| ...|.+.|+
T Consensus      1064 p~~lsv~vigaRHL~k----~gr~i~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFeI~nPe~A~lRF~V~ 1139 (1267)
T KOG1264|consen 1064 PMTLSVKVLGARHLPK----LGRSIACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFEIYNPEFAFLRFVVY 1139 (1267)
T ss_pred             ceEEEEEEeecccccc----CCCCccCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEEEeeCCceEEEEEEEe
Confidence            3578999999999993    45677789999988     2344544 455578999999 9999999998 579999999


Q ss_pred             eCCCcCCCCCCCCCcccEEEEEEcccccCCCEEeeeEeeeecC
Q 045058          667 DNSQLGEKSNGNKDLKIGKVRIRISTLETGRIYTHSYPLLVLH  709 (1005)
Q Consensus       667 d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~  709 (1005)
                      |+|.++      ...|||.+..|+..|..|-   +..||++..
T Consensus      1140 eeDmfs------~~~FiaqA~yPv~~ik~Gf---RsVpLkN~y 1173 (1267)
T KOG1264|consen 1140 EEDMFS------DPNFLAQATYPVKAIKSGF---RSVPLKNGY 1173 (1267)
T ss_pred             cccccC------Ccceeeeeecchhhhhccc---eeeecccCc
Confidence            999988      5669999999999999885   678887443

>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]

Probab=98.67  E-value=6.5e-08  Score=109.36  Aligned_cols=101  Identities=28%  Similarity=0.467  Sum_probs=82.6

Q ss_pred             cEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----e-EeeccccCCCCCCcee-eEEEEEeccCccccceEEEEEEEe
Q 045058            4 LKLGVQVVGAHNLLPKDGKGSSSAFVELYFDG-----Q-RFRTTIKENDLNPVWN-ESFYFNISDASKLHYLTLEAYIYN   76 (1005)
Q Consensus         4 ~~l~V~v~~a~~L~~~d~~g~~dpyv~v~~~~-----~-~~~T~v~~~t~nP~Wn-e~f~f~v~~~~~~~~~~l~v~V~d   76 (1005)
                      ..|.|.|++||.|+. .+.|.+.|||+|.+-|     . .++|.|..|++||+|| |+|.|+|.+++   -..|.|.|+|
T Consensus      1065 ~~lsv~vigaRHL~k-~gr~i~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFeI~nPe---~A~lRF~V~e 1140 (1267)
T KOG1264|consen 1065 MTLSVKVLGARHLPK-LGRSIACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFEIYNPE---FAFLRFVVYE 1140 (1267)
T ss_pred             eEEEEEEeecccccc-CCCCccCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEEEeeCCc---eEEEEEEEec
Confidence            578999999999984 4556788999999844     2 4555688999999999 99999998877   3789999999


Q ss_pred             CCCCCCCCcccEEEEEeCCcccCCCCceeeeEecccC
Q 045058           77 NIGDTNSRSFLGKVCLTGNSFVPLSDSVVLHYPLEKR  113 (1005)
Q Consensus        77 ~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~  113 (1005)
                      . +.++...|||++..|+..+..+-    .-.||.+.
T Consensus      1141 e-Dmfs~~~FiaqA~yPv~~ik~Gf----RsVpLkN~ 1172 (1267)
T KOG1264|consen 1141 E-DMFSDPNFLAQATYPVKAIKSGF----RSVPLKNG 1172 (1267)
T ss_pred             c-cccCCcceeeeeecchhhhhccc----eeeecccC
Confidence            8 57778889999999998886643    24677665

>KOG1327 consensus Copine [Signal transduction mechanisms]

Probab=98.53  E-value=7.8e-07  Score=99.42  Aligned_cols=181  Identities=18%  Similarity=0.194  Sum_probs=123.7

Q ss_pred             eEEeeecccCCCCCcccccEEEEEeeCCCCCeEEEEEEeccC----CCCCceeEEEEEcccccccccccccccceeEEcc
Q 045058          466 QVLKTKICQARTLSAVWNEDLLFVAAEPFEDHLVLTVEDRVG----PGKDEIIGRVIIPLSAIEKRADERIIHSRWFNLE  541 (1005)
Q Consensus       466 ~~~kT~~~~~~t~~P~w~e~f~f~v~~~~~~~l~i~V~d~d~----~~~d~~iG~~~i~l~~l~~~~~~~~~~~~w~~L~  541 (1005)
                      +..+|.++. +.+||.|.+.|.........+.|.+.++|.+.    ....+++|+..+.++.+......    ..-+.++
T Consensus        41 e~~rte~i~-~~~~p~f~~~~~l~y~fE~vQ~l~~~~~~~~~~~~~l~~~dflg~~~c~l~~ivs~~~~----~~~l~~~  115 (529)
T KOG1327|consen   41 EVGRTEVIR-NVLNPFFTKKFLLQYRFEKVQLLRFEVYDIDSRTPDLSSADFLGTAECTLSQIVSSSGL----TGPLLLK  115 (529)
T ss_pred             cccceeeee-ccCCccceeeechhheeeeeeeEEEEEeecCCccCCcchhcccceeeeehhhhhhhhhh----hhhhhcc
Confidence            445788887 89999999999998888888899999999764    35688999999999988754311    1111122


Q ss_pred             CCCccccccccccccccceeEEEeecCCccccCCCccccCCCcccccccCCCcceEEEEEEEEecCCCCCCCCCCCCCCC
Q 045058          542 KPVAVDVDQLKKEKFSSRIHLRVCLDGGYHVLDESTHYSSDLRPTAKQLWRPSIGILELGILNAVGLHPMKTRDGRGTSD  621 (1005)
Q Consensus       542 ~~~~~~~~~~~~~~~~~~i~l~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~g~l~v~i~~a~~L~~~~~~~~~~~~d  621 (1005)
                      ...           ..+...+.+..+..++         .              -....-.++|++|.+   +|..+++|
T Consensus       116 ~~~-----------~~~~g~iti~aee~~~---------~--------------~~~~~~~~~~~~ld~---kd~f~ksd  158 (529)
T KOG1327|consen  116 PGK-----------NAGSGTITISAEEDES---------D--------------NDVVQFSFRAKNLDP---KDFFSKSD  158 (529)
T ss_pred             cCc-----------cCCcccEEEEeecccc---------c--------------CceeeeeeeeeecCc---ccccccCC
Confidence            111           1122222222211110         0              011112345888874   57899999


Q ss_pred             cEEEEEE--C-CE---EEEeeeccCCCCceeccEEEEEEe-----CCCceEEEEEEeCCCcCCCCCCCCCcccEEEEEEc
Q 045058          622 TYCVAKY--G-HK---WVRTRTLVDNLSPKYNEQYTWEVF-----DPATVLTVGVFDNSQLGEKSNGNKDLKIGKVRIRI  690 (1005)
Q Consensus       622 pyv~~~~--g-~~---~~~T~~~~~t~nP~wne~f~~~v~-----~~~~~l~i~v~d~~~~~~~~~~~~d~~lG~~~i~l  690 (1005)
                      ||..+.-  + +.   .++|.++++++||.|.. |.++..     ++...+.|.|||++.-+      ++++||++..++
T Consensus       159 ~~l~~~~~~~d~s~~~~~~tEv~~n~l~p~w~~-~~i~~~~l~~~~~~~~~~i~~~d~~~~~------~~~~ig~~~tt~  231 (529)
T KOG1327|consen  159 PYLEFYKRVDDGSTQMLYRTEVVKNTLNPQWAP-FSISLQSLCSKDGNRPIQIECYDYDSNG------KHDLIGKFQTTL  231 (529)
T ss_pred             cceEEEEecCCCceeeccccceeccCCCCcccc-cccchhhhcccCCCCceEEEEeccCCCC------CcCceeEecccH
Confidence            9998754  2 22   26999999999999976 445443     34678999999998654      789999999999


Q ss_pred             ccccC
Q 045058          691 STLET  695 (1005)
Q Consensus       691 ~~l~~  695 (1005)
                      +++..
T Consensus       232 ~~~~~  236 (529)
T KOG1327|consen  232 SELQE  236 (529)
T ss_pred             HHhcc
Confidence            99863

>PLN02352 phospholipase D epsilon

Probab=98.52  E-value=6.2e-07  Score=105.25  Aligned_cols=118  Identities=20%  Similarity=0.262  Sum_probs=92.2

Q ss_pred             ceEEEEEEEEecCCCCCC---CCCCCCCCCcEEEEEECCEEE-EeeeccCCCCceeccEEEEEEeCCC-ceEEEEEEeCC
Q 045058          595 IGILELGILNAVGLHPMK---TRDGRGTSDTYCVAKYGHKWV-RTRTLVDNLSPKYNEQYTWEVFDPA-TVLTVGVFDNS  669 (1005)
Q Consensus       595 ~g~l~v~i~~a~~L~~~~---~~~~~~~~dpyv~~~~g~~~~-~T~~~~~t~nP~wne~f~~~v~~~~-~~l~i~v~d~~  669 (1005)
                      -|.|.++|++|+-+...-   ...+.+ .||||.|.+++.++ ||   .+.-||+|||.|.+++..+. +.|+|.|.|. 
T Consensus         9 hg~l~~~i~~~~~~~~~~~~~~~~~~~-~~~y~tv~~~~~~v~rt---~~~~~p~w~e~f~i~~ah~~~~~~~f~vk~~-   83 (758)
T PLN02352          9 HGTLEATIFDATPYTPPFPFNCIFLNG-KATYVTIKIGNKKVAKT---SHEYDRVWNQTFQILCAHPLDSTITITLKTK-   83 (758)
T ss_pred             ccceEEEEEEeeehhhcccccccccCC-CCceEEEEeCCcEEecC---CCCCCCccccceeEEeeeecCCcEEEEEecC-
Confidence            499999999998332210   011122 39999999988765 88   55569999999999999987 7999999983 


Q ss_pred             CcCCCCCCCCCcccEEEEEEcccccCCCE-EeeeEeeeecCCCCCceeeEEEEEEEEeec
Q 045058          670 QLGEKSNGNKDLKIGKVRIRISTLETGRI-YTHSYPLLVLHPTGVKKMGELHLAIRFSCT  728 (1005)
Q Consensus       670 ~~~~~~~~~~d~~lG~~~i~l~~l~~~~~-~~~~~~L~~~~~~~~~~~G~i~l~~~~~~~  728 (1005)
                                ..+||++.||+.+|..|.. .+.||++.....+-... ..|++.++|.+.
T Consensus        84 ----------~~~ig~~~~p~~~~~~g~~~~~~~~~~~~~~~~p~~~-~~~~~~~~~~~~  132 (758)
T PLN02352         84 ----------CSILGRFHIQAHQIVTEASFINGFFPLIMENGKPNPE-LKLRFMLWFRPA  132 (758)
T ss_pred             ----------CeEEEEEEEEHHHhhCCCcccceEEEcccCCCCCCCC-CEEEEEEEEEEh
Confidence                      5799999999999999865 89999998666544422 589999999763

>KOG1327 consensus Copine [Signal transduction mechanisms]

Probab=98.41  E-value=2.6e-06  Score=95.28  Aligned_cols=179  Identities=18%  Similarity=0.227  Sum_probs=126.0

Q ss_pred             eeeeeecCCCCCeeeeEEEEeecCCCCcEEEEEEEeCC-----CCCCceeEEEEEEceecCCCCCCCCCCCCeEEEeecC
Q 045058          304 GITKHYEKNQNPQWHQVFAFSRDRMQASVLEVVIKDKD-----LVKDDFVGIVRFDINEVPLRVPPDSPLAPEWYRLEDK  378 (1005)
Q Consensus       304 ~kT~~~~~~~nP~wne~f~f~~~~~~~~~l~v~V~d~~-----~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~  378 (1005)
                      .+|.++.+.+||.|.+.|.....-...+.|++.++|.+     ....+|+|++...+.++.....     ...-+.++..
T Consensus        43 ~rte~i~~~~~p~f~~~~~l~y~fE~vQ~l~~~~~~~~~~~~~l~~~dflg~~~c~l~~ivs~~~-----~~~~l~~~~~  117 (529)
T KOG1327|consen   43 GRTEVIRNVLNPFFTKKFLLQYRFEKVQLLRFEVYDIDSRTPDLSSADFLGTAECTLSQIVSSSG-----LTGPLLLKPG  117 (529)
T ss_pred             cceeeeeccCCccceeeechhheeeeeeeEEEEEeecCCccCCcchhcccceeeeehhhhhhhhh-----hhhhhhcccC
Confidence            48999999999999999988766555578999999976     2457899999999998875421     1111222221


Q ss_pred             CCCccceEEEEEEEEeccCCcccccccCCCCCCCCCCCCccccccccccccCCceEEEEEEEEEeeeCCCCCCCCCCCcE
Q 045058          379 KGEKIKGELMLAVWIGTQADEAFSDAWHSDAATPVDSTPAITAVIRSKVYHSPRLWYVRVNVVEAQDLVPTEKNHFPDVY  458 (1005)
Q Consensus       379 ~~~~~~G~i~l~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~V~v~~a~~L~~~d~~~~~dpy  458 (1005)
                       .....|.|.+.+.-..           ..                         .....-..+|++|...|..+++|||
T Consensus       118 -~~~~~g~iti~aee~~-----------~~-------------------------~~~~~~~~~~~~ld~kd~f~ksd~~  160 (529)
T KOG1327|consen  118 -KNAGSGTITISAEEDE-----------SD-------------------------NDVVQFSFRAKNLDPKDFFSKSDPY  160 (529)
T ss_pred             -ccCCcccEEEEeeccc-----------cc-------------------------CceeeeeeeeeecCcccccccCCcc
Confidence             1113477776653100           00                         0112223458999999999999999


Q ss_pred             EEEEE--CC----eEEeeecccCCCCCcccccEEEEEee----CCCCCeEEEEEEeccCCCCCceeEEEEEccccccc
Q 045058          459 VKAQI--GN----QVLKTKICQARTLSAVWNEDLLFVAA----EPFEDHLVLTVEDRVGPGKDEIIGRVIIPLSAIEK  526 (1005)
Q Consensus       459 v~v~l--g~----~~~kT~~~~~~t~~P~w~e~f~f~v~----~~~~~~l~i~V~d~d~~~~d~~iG~~~i~l~~l~~  526 (1005)
                      ..+.-  +.    ..++|.+++ ++++|.|... .....    ...+..+.+.+||++..+++++||++..+++++..
T Consensus       161 l~~~~~~~d~s~~~~~~tEv~~-n~l~p~w~~~-~i~~~~l~~~~~~~~~~i~~~d~~~~~~~~~ig~~~tt~~~~~~  236 (529)
T KOG1327|consen  161 LEFYKRVDDGSTQMLYRTEVVK-NTLNPQWAPF-SISLQSLCSKDGNRPIQIECYDYDSNGKHDLIGKFQTTLSELQE  236 (529)
T ss_pred             eEEEEecCCCceeeccccceec-cCCCCccccc-ccchhhhcccCCCCceEEEEeccCCCCCcCceeEecccHHHhcc
Confidence            88876  22    367889986 9999999884 32221    12356788999999999999999999999988864

>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins

Probab=98.28  E-value=1.6e-06  Score=77.48  Aligned_cols=108  Identities=21%  Similarity=0.348  Sum_probs=80.1

Q ss_pred             EEEEEEEecCCCCCCC------CCC----CCCCCcEEEEEE----CCEEEEeeeccCCCCceeccEEEEEEe--------
Q 045058          598 LELGILNAVGLHPMKT------RDG----RGTSDTYCVAKY----GHKWVRTRTLVDNLSPKYNEQYTWEVF--------  655 (1005)
Q Consensus       598 l~v~i~~a~~L~~~~~------~~~----~~~~dpyv~~~~----g~~~~~T~~~~~t~nP~wne~f~~~v~--------  655 (1005)
                      |.|.|++|.||+..-.      .+.    .-..++||++.+    +++..+|+++.++.-|+|+..++|++.        
T Consensus         1 lsv~I~RA~GLqaAA~~la~~~~~l~y~a~VGVN~yv~i~lSFl~~~e~r~TrtVArSFcPeF~Hh~Efpc~lv~~~~~G   80 (143)
T cd08683           1 LSVQIHRASGLQAAARALAEQDPSLQYSATVGVNSYVTIHLSFLPEKELRRTRTVARSFCPEFNHHVEFPCNLVVQRNSG   80 (143)
T ss_pred             CeEEeehhhhHHHHHHHHhhhCcccccceecccceEEEEEeccCCCCceeeccchhhhcCCCccceEEEecccEEEcCCC
Confidence            4688999999985211      011    123589999986    567789999999999999999999875        


Q ss_pred             CC--------CceEEEEEEeCCCcCCCC----CCCCCcccEEEEEEcccccCCC-EEeeeEee
Q 045058          656 DP--------ATVLTVGVFDNSQLGEKS----NGNKDLKIGKVRIRISTLETGR-IYTHSYPL  705 (1005)
Q Consensus       656 ~~--------~~~l~i~v~d~~~~~~~~----~~~~d~~lG~~~i~l~~l~~~~-~~~~~~~L  705 (1005)
                      ..        ...+.++||..+.-+...    ...+|-.||.+.||+.+|...+ ..+.|||+
T Consensus        81 e~~sLAElLe~~eiil~vwHr~~~s~~~~~~~~~~~DilLG~v~IPl~~Ll~~rsGitGW~pi  143 (143)
T cd08683          81 EAISLAELLESAEIILEVWHRNPKSAGDTIKIETSGDILLGTVKIPLRDLLTKRSGITGWYPI  143 (143)
T ss_pred             ccccHHHHhhcceEEeeeeecCCccccceeccCcCCcEEEEEEEeeHHHHhhcccCccccccC
Confidence            11        358999999887544110    2446778999999999976654 67899985

C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc

>PLN02352 phospholipase D epsilon

Probab=98.23  E-value=6.5e-06  Score=96.89  Aligned_cols=116  Identities=15%  Similarity=0.211  Sum_probs=88.3

Q ss_pred             cEEEEEEEEeecCCCC----CC-CCCCCcEEEEEECCe-EeeccccCCCCCCceeeEEEEEeccCccccceEEEEEEEeC
Q 045058            4 LKLGVQVVGAHNLLPK----DG-KGSSSAFVELYFDGQ-RFRTTIKENDLNPVWNESFYFNISDASKLHYLTLEAYIYNN   77 (1005)
Q Consensus         4 ~~l~V~v~~a~~L~~~----d~-~g~~dpyv~v~~~~~-~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~   77 (1005)
                      |.|.++|.+|+-+...    +. ....||||.|.+++. ..||   .+.-||+|||+|.+.+...-   ...|.|.|.| 
T Consensus        10 g~l~~~i~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~~~v~rt---~~~~~p~w~e~f~i~~ah~~---~~~~~f~vk~-   82 (758)
T PLN02352         10 GTLEATIFDATPYTPPFPFNCIFLNGKATYVTIKIGNKKVAKT---SHEYDRVWNQTFQILCAHPL---DSTITITLKT-   82 (758)
T ss_pred             cceEEEEEEeeehhhcccccccccCCCCceEEEEeCCcEEecC---CCCCCCccccceeEEeeeec---CCcEEEEEec-
Confidence            6799999999843221    11 112399999999886 5788   45669999999999985432   1368999988 


Q ss_pred             CCCCCCCcccEEEEEeCCcccCCCCceeeeEecccCCCcceeeeEEEEEEEEec
Q 045058           78 IGDTNSRSFLGKVCLTGNSFVPLSDSVVLHYPLEKRGIFSHVRGELGLKVYITD  131 (1005)
Q Consensus        78 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~~~  131 (1005)
                           +..+||.+.|++.++..+....+.|+++....++.....+|++++.|.+
T Consensus        83 -----~~~~ig~~~~p~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~  131 (758)
T PLN02352         83 -----KCSILGRFHIQAHQIVTEASFINGFFPLIMENGKPNPELKLRFMLWFRP  131 (758)
T ss_pred             -----CCeEEEEEEEEHHHhhCCCcccceEEEcccCCCCCCCCCEEEEEEEEEE
Confidence                 2569999999999998876656789999887665432249999999988

>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]

Probab=98.18  E-value=1.7e-06  Score=102.09  Aligned_cols=105  Identities=24%  Similarity=0.365  Sum_probs=88.9

Q ss_pred             eeEEEEEEEEeecCCCCCCCCCCCcEEEEEECCe-----eeeeeeecCCCCCeeeeEEEEe---ecCCCCcEEEEEEEeC
Q 045058          269 MYFLYVRVVKARELPAMDLTGSIDPFVEVKIGNY-----KGITKHYEKNQNPQWHQVFAFS---RDRMQASVLEVVIKDK  340 (1005)
Q Consensus       269 ~~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~~~-----~~kT~~~~~~~nP~wne~f~f~---~~~~~~~~l~v~V~d~  340 (1005)
                      .+.|.|.|..+++|+-..-+..+||||+.++.+.     +.||+++++|.||.|||...+.   ...+....|.++||..
T Consensus      1523 ~~~LtImV~H~K~L~~Lqdg~~P~pyVK~YLlPdp~k~sKRKTKvvrkt~~PTfnE~LvY~g~p~~~l~qReLQ~sVls~ 1602 (1639)
T KOG0905|consen 1523 NGTLTIMVMHAKGLALLQDGQDPDPYVKTYLLPDPRKTSKRKTKVVRKTRNPTFNEMLVYDGFPKEILQQRELQVSVLSN 1602 (1639)
T ss_pred             CceEEEEhhhhcccccccCCCCCCcceeEEecCCchHhhhhhhccccccCCCchhhheeecCCchhhhhhheeeeeeecc
Confidence            5899999999999977666778999999999863     4689999999999999998875   4556667899999999


Q ss_pred             C-CCCCceeEEEEEEceecCCCCCCCCCCCCeEEEeecC
Q 045058          341 D-LVKDDFVGIVRFDINEVPLRVPPDSPLAPEWYRLEDK  378 (1005)
Q Consensus       341 ~-~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~  378 (1005)
                      + ...+.+||.+.|+|.++...     .....||+|...
T Consensus      1603 ~~~~en~~lg~v~i~L~~~~l~-----kE~~~Wy~lg~~ 1636 (1639)
T KOG0905|consen 1603 GGLLENVFLGGVNIPLLKVDLL-----KESVGWYNLGAC 1636 (1639)
T ss_pred             cceeeeeeeeeeecchhhcchh-----hhhcceeecccc
Confidence            8 77899999999999998875     234589998653

>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]

Probab=98.18  E-value=1.5e-06  Score=102.49  Aligned_cols=109  Identities=23%  Similarity=0.263  Sum_probs=89.5

Q ss_pred             CcEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eEeeccccCCCCCCceeeEEEEEeccCccccceEEEEEEEeC
Q 045058            3 NLKLGVQVVGAHNLLPKDGKGSSSAFVELYFDG-----QRFRTTIKENDLNPVWNESFYFNISDASKLHYLTLEAYIYNN   77 (1005)
Q Consensus         3 ~~~l~V~v~~a~~L~~~d~~g~~dpyv~v~~~~-----~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~   77 (1005)
                      ++.|.|-|+-|++|..-..+..+||||+.++--     .|.||+++++|.||.|||.+.+.-...+.++...|.+.||..
T Consensus      1523 ~~~LtImV~H~K~L~~Lqdg~~P~pyVK~YLlPdp~k~sKRKTKvvrkt~~PTfnE~LvY~g~p~~~l~qReLQ~sVls~ 1602 (1639)
T KOG0905|consen 1523 NGTLTIMVMHAKGLALLQDGQDPDPYVKTYLLPDPRKTSKRKTKVVRKTRNPTFNEMLVYDGFPKEILQQRELQVSVLSN 1602 (1639)
T ss_pred             CceEEEEhhhhcccccccCCCCCCcceeEEecCCchHhhhhhhccccccCCCchhhheeecCCchhhhhhheeeeeeecc
Confidence            578999999999996544455789999999843     278999999999999999999984333446678999999998


Q ss_pred             CCCCCCCcccEEEEEeCCcccCCCCceeeeEecccC
Q 045058           78 IGDTNSRSFLGKVCLTGNSFVPLSDSVVLHYPLEKR  113 (1005)
Q Consensus        78 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~  113 (1005)
                       .+...+.|||.+.|+|..+....+.. .||+|...
T Consensus      1603 -~~~~en~~lg~v~i~L~~~~l~kE~~-~Wy~lg~~ 1636 (1639)
T KOG0905|consen 1603 -GGLLENVFLGGVNIPLLKVDLLKESV-GWYNLGAC 1636 (1639)
T ss_pred             -cceeeeeeeeeeecchhhcchhhhhc-ceeecccc
Confidence             46678999999999999987666543 69999764

>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length

Probab=98.14  E-value=0.00048  Score=74.83  Aligned_cols=245  Identities=16%  Similarity=0.217  Sum_probs=158.0

Q ss_pred             EEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeeecCCCCCeeeeEEEEeec-------CCCCcEEEEEEEeCC--C
Q 045058          272 LYVRVVKARELPAMDLTGSIDPFVEVKIGNYKGITKHYEKNQNPQWHQVFAFSRD-------RMQASVLEVVIKDKD--L  342 (1005)
Q Consensus       272 L~V~v~~a~~L~~~~~~g~~dPyv~v~~~~~~~kT~~~~~~~nP~wne~f~f~~~-------~~~~~~l~v~V~d~~--~  342 (1005)
                      +.|+|++|++++...   .-.-.+..++++....|..+..+..|.||..+.+.++       ..+..+|++++|..+  .
T Consensus         2 ivl~i~egr~F~~~~---~~~~vv~a~~ng~~l~TDpv~~~~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~c~a~~~~~   78 (340)
T PF12416_consen    2 IVLSILEGRNFPQRP---RHPIVVEAKFNGESLETDPVPHTESPQFNTELAWECDRKALKQHRLQRTPIKLQCFAVDGST   78 (340)
T ss_pred             EEEEEecccCCCCCC---CccEEEEEEeCCceeeecCCCCCCCceeecceeeeccHHHHHHhhccCCceEEEEEEecCCC
Confidence            578999999998763   2356888999999999999999999999999998754       345678999999987  5


Q ss_pred             CCCceeEEEEEEceecCCCCCCCCCCCCeEEEeecCC--CCccceEEEEEEEEeccCCcccccc--cCCCCCCCCCC---
Q 045058          343 VKDDFVGIVRFDINEVPLRVPPDSPLAPEWYRLEDKK--GEKIKGELMLAVWIGTQADEAFSDA--WHSDAATPVDS---  415 (1005)
Q Consensus       343 ~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~--~~~~~G~i~l~~~~~~~~d~~~~~~--~~~~~~~~~~~---  415 (1005)
                      +..+.+|.+.++|+..............+||+|-..+  -.+.+-+|.+.+.............  .... ..|...   
T Consensus        79 ~~re~iGyv~LdLRsa~~~~~~~~~~~~~W~~LL~~~~~y~~~KPEl~l~l~ie~~~~~~~~~~~~~~~~-~~p~~~~~~  157 (340)
T PF12416_consen   79 GKRESIGYVVLDLRSAVVPQEKNQKQKPKWYKLLSSSSKYKKHKPELLLSLSIEDDSKPQTPDFESFKAK-PAPPRQGHV  157 (340)
T ss_pred             CcceeccEEEEEccccccccccccccCCCeeEccccccccccCCccEEEEEEEeccccccCCcccccccc-CCCcccCCC
Confidence            6789999999999988222222235678999998873  3335678888887765432110000  0000 001000   


Q ss_pred             -----------------CCccccccccccccCCceEEEEEEEEEeeeCCCCC----CC--CCCCcEEEEEECCeEEeeec
Q 045058          416 -----------------TPAITAVIRSKVYHSPRLWYVRVNVVEAQDLVPTE----KN--HFPDVYVKAQIGNQVLKTKI  472 (1005)
Q Consensus       416 -----------------~~~~~~~~r~~~~~~~~~~~L~V~v~~a~~L~~~d----~~--~~~dpyv~v~lg~~~~kT~~  472 (1005)
                                       ..+++..+.+.- .......|.|++..|+||...-    ..  +....|....+-+....|..
T Consensus       158 ~~~~~~~~~~~l~~~l~~~eg~lQIGp~~-~~~d~FvLsvti~~a~nL~~Lip~~l~~~~~~~~f~f~YsllGn~Vt~~~  236 (340)
T PF12416_consen  158 PPPNSLLSPATLIPVLLEDEGLLQIGPPD-LCCDLFVLSVTIKFAENLEQLIPSSLPEEQNHSGFFFYYSLLGNDVTTEP  236 (340)
T ss_pred             cccccccCccceeEEEccCCceEeeCCch-hcCceEEEEEehhhhhhHHhhccccccccCCCccEEEEEEecCcEeEeee
Confidence                             011111111111 1224678999999999998762    11  23566777777555555555


Q ss_pred             ccCCCCCccc--ccEEEEEeeCC---------CCCeEEEEEEeccCCCCCceeEEEEEcccccccc
Q 045058          473 CQARTLSAVW--NEDLLFVAAEP---------FEDHLVLTVEDRVGPGKDEIIGRVIIPLSAIEKR  527 (1005)
Q Consensus       473 ~~~~t~~P~w--~e~f~f~v~~~---------~~~~l~i~V~d~d~~~~d~~iG~~~i~l~~l~~~  527 (1005)
                      -. ...+|.|  ++...+.+...         ....|.|.++-     .+..||.+.|++..+...
T Consensus       237 F~-~l~~~~f~~er~s~vRirSS~~~L~~yf~~~~~L~I~Lc~-----g~~~Lg~~~v~l~~Ll~~  296 (340)
T PF12416_consen  237 FK-SLSSPSFPPERASGVRIRSSLRVLRRYFQQIPKLQIHLCC-----GNQSLGSTSVPLQPLLPK  296 (340)
T ss_pred             cc-ccCCCCcCeeeeeEEeecccHHHHHHHHhhCCCeEEEEee-----CCcEEEEEEEEhhhccCC
Confidence            53 6667765  33333544321         23356666665     367899999999998754

>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins

Probab=97.99  E-value=1.1e-05  Score=72.16  Aligned_cols=105  Identities=18%  Similarity=0.254  Sum_probs=78.9

Q ss_pred             EEEEEEEeecCCCC-------C--C----CCCCCcEEEEEE----CCeEeeccccCCCCCCceeeEEEEEec------cC
Q 045058            6 LGVQVVGAHNLLPK-------D--G----KGSSSAFVELYF----DGQRFRTTIKENDLNPVWNESFYFNIS------DA   62 (1005)
Q Consensus         6 l~V~v~~a~~L~~~-------d--~----~g~~dpyv~v~~----~~~~~~T~v~~~t~nP~Wne~f~f~v~------~~   62 (1005)
                      |.|.|+.|.||+..       +  .    .-..|+||++.+    +++..+|+++.++..|.||.+++|.++      ..
T Consensus         1 lsv~I~RA~GLqaAA~~la~~~~~l~y~a~VGVN~yv~i~lSFl~~~e~r~TrtVArSFcPeF~Hh~Efpc~lv~~~~~G   80 (143)
T cd08683           1 LSVQIHRASGLQAAARALAEQDPSLQYSATVGVNSYVTIHLSFLPEKELRRTRTVARSFCPEFNHHVEFPCNLVVQRNSG   80 (143)
T ss_pred             CeEEeehhhhHHHHHHHHhhhCcccccceecccceEEEEEeccCCCCceeeccchhhhcCCCccceEEEecccEEEcCCC
Confidence            46889999999532       1  1    123699999995    456899999999999999999999975      11


Q ss_pred             c------cccceEEEEEEEeCCCC---------CCCCcccEEEEEeCCcccCCCCceeeeEec
Q 045058           63 S------KLHYLTLEAYIYNNIGD---------TNSRSFLGKVCLTGNSFVPLSDSVVLHYPL  110 (1005)
Q Consensus        63 ~------~~~~~~l~v~V~d~~~~---------~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L  110 (1005)
                      +      .++...+.|+||+....         ..+|-.||.+.||+.+|.........||++
T Consensus        81 e~~sLAElLe~~eiil~vwHr~~~s~~~~~~~~~~~DilLG~v~IPl~~Ll~~rsGitGW~pi  143 (143)
T cd08683          81 EAISLAELLESAEIILEVWHRNPKSAGDTIKIETSGDILLGTVKIPLRDLLTKRSGITGWYPI  143 (143)
T ss_pred             ccccHHHHhhcceEEeeeeecCCccccceeccCcCCcEEEEEEEeeHHHHhhcccCccccccC
Confidence            1      14567899999997422         235679999999999997766555679985

C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc

>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length

Probab=97.87  E-value=0.0054  Score=66.84  Aligned_cols=239  Identities=15%  Similarity=0.185  Sum_probs=155.5

Q ss_pred             EEEEEEEeeeCCCCCCCCCCCcEEEEEECCeEEeeecccCCCCCcccccEEEEEeeCC-------CCCeEEEEEEecc-C
Q 045058          436 VRVNVVEAQDLVPTEKNHFPDVYVKAQIGNQVLKTKICQARTLSAVWNEDLLFVAAEP-------FEDHLVLTVEDRV-G  507 (1005)
Q Consensus       436 L~V~v~~a~~L~~~d~~~~~dpyv~v~lg~~~~kT~~~~~~t~~P~w~e~f~f~v~~~-------~~~~l~i~V~d~d-~  507 (1005)
                      +.|.|++|++.+...   .-.-.|..++.++...|..+. .+..|.||..+.+.+...       +...|++++|..| .
T Consensus         2 ivl~i~egr~F~~~~---~~~~vv~a~~ng~~l~TDpv~-~~~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~c~a~~~~   77 (340)
T PF12416_consen    2 IVLSILEGRNFPQRP---RHPIVVEAKFNGESLETDPVP-HTESPQFNTELAWECDRKALKQHRLQRTPIKLQCFAVDGS   77 (340)
T ss_pred             EEEEEecccCCCCCC---CccEEEEEEeCCceeeecCCC-CCCCceeecceeeeccHHHHHHhhccCCceEEEEEEecCC
Confidence            678999999998662   246678999999999999886 899999999999987432       4558999999988 5


Q ss_pred             CCCCceeEEEEEccccc-ccccccccccceeEEccCCCccccccccccccccceeEEEeecCCccccCCCc---------
Q 045058          508 PGKDEIIGRVIIPLSAI-EKRADERIIHSRWFNLEKPVAVDVDQLKKEKFSSRIHLRVCLDGGYHVLDEST---------  577 (1005)
Q Consensus       508 ~~~d~~iG~~~i~l~~l-~~~~~~~~~~~~w~~L~~~~~~~~~~~~~~~~~~~i~l~~~l~~~~~~~~~~~---------  577 (1005)
                      .+..+.||.+.++|+.. .....+.....+||+|-+......      ++...+.+.++++..........         
T Consensus        78 ~~~re~iGyv~LdLRsa~~~~~~~~~~~~~W~~LL~~~~~y~------~~KPEl~l~l~ie~~~~~~~~~~~~~~~~~~p  151 (340)
T PF12416_consen   78 TGKRESIGYVVLDLRSAVVPQEKNQKQKPKWYKLLSSSSKYK------KHKPELLLSLSIEDDSKPQTPDFESFKAKPAP  151 (340)
T ss_pred             CCcceeccEEEEEccccccccccccccCCCeeEccccccccc------cCCccEEEEEEEeccccccCCccccccccCCC
Confidence            67888999999999888 112222346789999988743211      22345666666654332211100         


Q ss_pred             cccC-------CCcc-----cc---c---ccC----CCcceEEEEEEEEecCCCCCCCCC---CCCCCCcEEEEEECCEE
Q 045058          578 HYSS-------DLRP-----TA---K---QLW----RPSIGILELGILNAVGLHPMKTRD---GRGTSDTYCVAKYGHKW  632 (1005)
Q Consensus       578 ~~~~-------d~~~-----~~---~---~~~----~~~~g~l~v~i~~a~~L~~~~~~~---~~~~~dpyv~~~~g~~~  632 (1005)
                      ....       .+.+     -.   .   ++-    ....-.|.|+|-.|++|..+....   ..+.+.-|....+=+..
T Consensus       152 ~~~~~~~~~~~~~~~~~l~~~l~~~eg~lQIGp~~~~~d~FvLsvti~~a~nL~~Lip~~l~~~~~~~~f~f~YsllGn~  231 (340)
T PF12416_consen  152 PRQGHVPPPNSLLSPATLIPVLLEDEGLLQIGPPDLCCDLFVLSVTIKFAENLEQLIPSSLPEEQNHSGFFFYYSLLGND  231 (340)
T ss_pred             cccCCCcccccccCccceeEEEccCCceEeeCCchhcCceEEEEEehhhhhhHHhhccccccccCCCccEEEEEEecCcE
Confidence            0000       0000     00   0   000    123568999999999998762111   11234556666664446


Q ss_pred             EEeeeccCCCCceec--cEEEEEEeC----------CCceEEEEEEeCCCcCCCCCCCCCcccEEEEEEcccccC
Q 045058          633 VRTRTLVDNLSPKYN--EQYTWEVFD----------PATVLTVGVFDNSQLGEKSNGNKDLKIGKVRIRISTLET  695 (1005)
Q Consensus       633 ~~T~~~~~t~nP~wn--e~f~~~v~~----------~~~~l~i~v~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~  695 (1005)
                      +.|.......+|.+-  +.-.+.+..          ....|.|.++-.           +..||.+.|++..+..
T Consensus       232 Vt~~~F~~l~~~~f~~er~s~vRirSS~~~L~~yf~~~~~L~I~Lc~g-----------~~~Lg~~~v~l~~Ll~  295 (340)
T PF12416_consen  232 VTTEPFKSLSSPSFPPERASGVRIRSSLRVLRRYFQQIPKLQIHLCCG-----------NQSLGSTSVPLQPLLP  295 (340)
T ss_pred             eEeeeccccCCCCcCeeeeeEEeecccHHHHHHHHhhCCCeEEEEeeC-----------CcEEEEEEEEhhhccC
Confidence            777777777788653  333366542          135788888764           5789999999999753

>KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only]

Probab=97.64  E-value=3.4e-05  Score=81.97  Aligned_cols=125  Identities=22%  Similarity=0.289  Sum_probs=95.8

Q ss_pred             cEEEEEEEEeecCCCCCCCCCCCcEEEEEE---C--CeEeeccccCCCCCCceeeEEEEEeccCcc--------ccceEE
Q 045058            4 LKLGVQVVGAHNLLPKDGKGSSSAFVELYF---D--GQRFRTTIKENDLNPVWNESFYFNISDASK--------LHYLTL   70 (1005)
Q Consensus         4 ~~l~V~v~~a~~L~~~d~~g~~dpyv~v~~---~--~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~--------~~~~~l   70 (1005)
                      ..|++.|+++.+++...+..-.|-||.+.+   +  .++.+|.++++|.+|.|+|.|.+.+.....        +....+
T Consensus       367 ~elel~ivrg~~~pvp~gp~hld~fvr~efpl~nD~~qk~kt~vik~t~SPdfde~fklni~rg~~~nr~fqR~fkr~g~  446 (523)
T KOG3837|consen  367 QELELAIVRGQKNPVPGGPMHLDQFVRLEFPLENDSRQKLKTDVIKVTPSPDFDEDFKLNIRRGPGLNREFQRRFKRLGK  446 (523)
T ss_pred             hHhHHHHhhcccCCCCCCchhHHhhhcccccccccccccCccceeeCCCCCCcccceeeeccCCCcccHHHHHHHHhcCe
Confidence            456788888888876544444688999886   2  347888899999999999999999865221        244678


Q ss_pred             EEEEEeCCCCCCCCcccEEEEEeCCcccCCCCceeeeEecccCCCcceeeeEEEEEEEEec
Q 045058           71 EAYIYNNIGDTNSRSFLGKVCLTGNSFVPLSDSVVLHYPLEKRGIFSHVRGELGLKVYITD  131 (1005)
Q Consensus        71 ~v~V~d~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~~~  131 (1005)
                      .|++|++.....+|.++|.+.+.|.-|....+.. ..|+|.+..  ..+.|.+.+++.+..
T Consensus       447 kfeifhkggf~rSdkl~gt~nikle~Len~cei~-e~~~l~DGR--K~vGGkLevKvRiR~  504 (523)
T KOG3837|consen  447 KFEIFHKGGFNRSDKLTGTGNIKLEILENMCEIC-EYLPLKDGR--KAVGGKLEVKVRIRQ  504 (523)
T ss_pred             eEEEeeccccccccceeceeeeeehhhhcccchh-hceeccccc--cccCCeeEEEEEEec
Confidence            9999999877888999999999998886655432 358886543  267899999998765

>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus)

Probab=97.53  E-value=9.5e-05  Score=61.26  Aligned_cols=97  Identities=18%  Similarity=0.240  Sum_probs=70.3

Q ss_pred             EEEEEEeecCCCCCCCC-CCCcEEE--EEECC-eEeeccccCCCCCCceeeEEEEEeccCccccceEEEEEEEeCCCCCC
Q 045058            7 GVQVVGAHNLLPKDGKG-SSSAFVE--LYFDG-QRFRTTIKENDLNPVWNESFYFNISDASKLHYLTLEAYIYNNIGDTN   82 (1005)
Q Consensus         7 ~V~v~~a~~L~~~d~~g-~~dpyv~--v~~~~-~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~~~~   82 (1005)
                      =++|+.|++|---...| ...-|++  +.+.+ ...||+++++..||+|+|+|.|.+... .++...|.|.|+++   ..
T Consensus         2 witv~~c~d~s~~~~~~e~~~i~ikg~~tl~kpv~~KsS~rrgs~d~~f~ETFVFqi~l~-qL~~V~L~fsv~~~---~~   77 (103)
T cd08684           2 WITVLKCKDLSWPSSCGENPTIYIKGILTLPKPVHFKSSAKEGSNDIEFMETFVFAIKLQ-NLQTVRLVFKIQTQ---TP   77 (103)
T ss_pred             EEEEEEecccccccccCcCCeeEEEEEEecCCCccccchhhcCCCChhHHHHHHHHHHHh-hccceEEEEEeecc---CC
Confidence            37899999996433222 2333444  22333 368999999999999999999998654 36778899999995   24


Q ss_pred             CCcccEEEEEeCCcccCCCCceeeeEe
Q 045058           83 SRSFLGKVCLTGNSFVPLSDSVVLHYP  109 (1005)
Q Consensus        83 ~d~~lG~~~i~l~~l~~~~~~~~~w~~  109 (1005)
                      +.+.||.|.+.++++-....  ..|.+
T Consensus        78 RKe~iG~~sL~l~s~geeE~--~HW~e  102 (103)
T cd08684          78 RKRTIGECSLSLRTLSTQET--DHWLE  102 (103)
T ss_pred             ccceeeEEEeecccCCHHHh--hhhhc
Confidence            88999999999988755433  34654

Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos

>PLN02964 phosphatidylserine decarboxylase

Probab=97.47  E-value=0.00018  Score=84.49  Aligned_cols=88  Identities=22%  Similarity=0.311  Sum_probs=74.1

Q ss_pred             cceEEEEEEEEecCCCCCCCCCCCCCCCcEEE-EEECCEEEEeeeccCCCCceeccEEEEEEeC-CCceEEEEEEeCCCc
Q 045058          594 SIGILELGILNAVGLHPMKTRDGRGTSDTYCV-AKYGHKWVRTRTLVDNLSPKYNEQYTWEVFD-PATVLTVGVFDNSQL  671 (1005)
Q Consensus       594 ~~g~l~v~i~~a~~L~~~~~~~~~~~~dpyv~-~~~g~~~~~T~~~~~t~nP~wne~f~~~v~~-~~~~l~i~v~d~~~~  671 (1005)
                      -.|.+.+++++|+    |+      ..|+|+. +.+|.+.+||.+.++|+||+||+...|.|.. .....++.|||.+.+
T Consensus        52 ~~~~~~~~~~~~~----~~------~~~~~~~~~~~g~~~f~t~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  121 (644)
T PLN02964         52 FSGIALLTLVGAE----MK------FKDKWLACVSFGEQTFRTETSDSTDKPVWNSEKKLLLEKNGPHLARISVFETNRL  121 (644)
T ss_pred             ccCeEEEEeehhh----hc------cCCcEEEEEEecceeeeeccccccCCcccchhhceEeccCCcceEEEEEEecCCC
Confidence            3599999999998    32      2488876 5679999999999999999999999999975 233469999999988


Q ss_pred             CCCCCCCCCcccEEEEEEcccccCCC
Q 045058          672 GEKSNGNKDLKIGKVRIRISTLETGR  697 (1005)
Q Consensus       672 ~~~~~~~~d~~lG~~~i~l~~l~~~~  697 (1005)
                      +      +++.+|.++++|.++...+
T Consensus       122 s------~n~lv~~~e~~~t~f~~kq  141 (644)
T PLN02964        122 S------KNTLVGYCELDLFDFVTQE  141 (644)
T ss_pred             C------HHHhhhheeecHhhccHHH
Confidence            7      8999999999998877654

>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus)

Probab=97.47  E-value=0.00015  Score=60.19  Aligned_cols=95  Identities=16%  Similarity=0.327  Sum_probs=69.3

Q ss_pred             EEEEEEeeeCCCCCC-CCCCCcEEEEEE---CCeEEeeecccCCCCCcccccEEEEEeeCC--CCCeEEEEEEeccCCCC
Q 045058          437 RVNVVEAQDLVPTEK-NHFPDVYVKAQI---GNQVLKTKICQARTLSAVWNEDLLFVAAEP--FEDHLVLTVEDRVGPGK  510 (1005)
Q Consensus       437 ~V~v~~a~~L~~~d~-~~~~dpyv~v~l---g~~~~kT~~~~~~t~~P~w~e~f~f~v~~~--~~~~l~i~V~d~d~~~~  510 (1005)
                      -|+|+.|+||.-... +..+..||+--+   .....||.... ...||.|+|+|.|.+...  ..-.|.++|+.  ...+
T Consensus         2 witv~~c~d~s~~~~~~e~~~i~ikg~~tl~kpv~~KsS~rr-gs~d~~f~ETFVFqi~l~qL~~V~L~fsv~~--~~~R   78 (103)
T cd08684           2 WITVLKCKDLSWPSSCGENPTIYIKGILTLPKPVHFKSSAKE-GSNDIEFMETFVFAIKLQNLQTVRLVFKIQT--QTPR   78 (103)
T ss_pred             EEEEEEecccccccccCcCCeeEEEEEEecCCCccccchhhc-CCCChhHHHHHHHHHHHhhccceEEEEEeec--cCCc
Confidence            478899999975443 334555666544   33566777775 899999999999988655  34467788887  4678


Q ss_pred             CceeEEEEEcccccccccccccccceeEE
Q 045058          511 DEIIGRVIIPLSAIEKRADERIIHSRWFN  539 (1005)
Q Consensus       511 d~~iG~~~i~l~~l~~~~~~~~~~~~w~~  539 (1005)
                      .+.||.|.++++++...+     ..+|..
T Consensus        79 Ke~iG~~sL~l~s~geeE-----~~HW~e  102 (103)
T cd08684          79 KRTIGECSLSLRTLSTQE-----TDHWLE  102 (103)
T ss_pred             cceeeEEEeecccCCHHH-----hhhhhc
Confidence            999999999999887553     456653

Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos

>KOG2060 consensus Rab3 effector RIM1 and related proteins, contain PDZ and C2 domains [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.35  E-value=0.00016  Score=76.54  Aligned_cols=107  Identities=21%  Similarity=0.361  Sum_probs=85.1

Q ss_pred             cEEEEEEEEeecCCCCCCCC-CCCcEEEEEEC--C---eEeeccccCCCCCCceeeEEEEEeccCccccceEEEEEEEeC
Q 045058            4 LKLGVQVVGAHNLLPKDGKG-SSSAFVELYFD--G---QRFRTTIKENDLNPVWNESFYFNISDASKLHYLTLEAYIYNN   77 (1005)
Q Consensus         4 ~~l~V~v~~a~~L~~~d~~g-~~dpyv~v~~~--~---~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~   77 (1005)
                      +.+.|.|+.|++|..+...+ .++|||+|++-  +   .+.+|+...+|+.|-+-+...|.-    ..+...|.++||..
T Consensus       269 g~l~vEii~ar~l~~k~~~k~~~apyVkVYlL~~g~c~ak~ktk~A~kT~~plyqq~l~f~~----sp~~k~Lq~tv~gd  344 (405)
T KOG2060|consen  269 GDLEVEIIRARGLVVKPGSKSLPAPYVKVYLLENGFCIAKKKTKSARKTLDPLYQQQLSFDQ----SPPGKYLQGTVWGD  344 (405)
T ss_pred             CceeEEEEecccccccCCcccccCceeEEEEcCCCceecccccccccccCchhhhhhhhhcc----CCCccEEEEEEecc
Confidence            78999999999998876543 68999999972  2   278999999999998888888874    34457999999975


Q ss_pred             CCCCCCCcccEEEEEeCCcccCCCCceeeeEecccCC
Q 045058           78 IGDTNSRSFLGKVCLTGNSFVPLSDSVVLHYPLEKRG  114 (1005)
Q Consensus        78 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~  114 (1005)
                      -..-..+.|+|.+.|-+.+|.........||+|.+.+
T Consensus       345 ygRmd~k~fmg~aqi~l~eL~ls~~~~igwyKlfgss  381 (405)
T KOG2060|consen  345 YGRMDHKSFMGVAQIMLDELNLSSSPVIGWYKLFGSS  381 (405)
T ss_pred             ccccchHHHhhHHHHHhhhhccccccceeeeeccCCc
Confidence            2222356899999999999977665556899998764

>PLN02964 phosphatidylserine decarboxylase

Probab=97.28  E-value=0.00038  Score=81.87  Aligned_cols=85  Identities=16%  Similarity=0.295  Sum_probs=72.2

Q ss_pred             eEEEEEEEEeecCCCCCCCCCCCcE-EEEEECCeeeeeeeecCCCCCeeeeEEEEeecCCCCcEEEEEEEeCC-CCCCce
Q 045058          270 YFLYVRVVKARELPAMDLTGSIDPF-VEVKIGNYKGITKHYEKNQNPQWHQVFAFSRDRMQASVLEVVIKDKD-LVKDDF  347 (1005)
Q Consensus       270 ~~L~V~v~~a~~L~~~~~~g~~dPy-v~v~~~~~~~kT~~~~~~~nP~wne~f~f~~~~~~~~~l~v~V~d~~-~~~d~~  347 (1005)
                      |++.+++++|+    ++.   .||| +.+.+|.+.+||.+.++|.||+||+...|.+.........|.|||.+ +..+++
T Consensus        54 ~~~~~~~~~~~----~~~---~~~~~~~~~~g~~~f~t~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~n~l  126 (644)
T PLN02964         54 GIALLTLVGAE----MKF---KDKWLACVSFGEQTFRTETSDSTDKPVWNSEKKLLLEKNGPHLARISVFETNRLSKNTL  126 (644)
T ss_pred             CeEEEEeehhh----hcc---CCcEEEEEEecceeeeeccccccCCcccchhhceEeccCCcceEEEEEEecCCCCHHHh
Confidence            88999999997    332   3775 45678889999999999999999999999887766667899999999 889999


Q ss_pred             eEEEEEEceecCCC
Q 045058          348 VGIVRFDINEVPLR  361 (1005)
Q Consensus       348 lG~~~i~l~~l~~~  361 (1005)
                      +|.|.++|.++...
T Consensus       127 v~~~e~~~t~f~~k  140 (644)
T PLN02964        127 VGYCELDLFDFVTQ  140 (644)
T ss_pred             hhheeecHhhccHH
Confidence            99999999877653

>KOG2060 consensus Rab3 effector RIM1 and related proteins, contain PDZ and C2 domains [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.06  E-value=0.00039  Score=73.74  Aligned_cols=107  Identities=21%  Similarity=0.288  Sum_probs=85.7

Q ss_pred             cceEEEEEEEEecCCCCCCCCCCCCCCCcEEEEEE-CCE----EEEeeeccCCCCceeccEEEEEEeCCCceEEEEEEeC
Q 045058          594 SIGILELGILNAVGLHPMKTRDGRGTSDTYCVAKY-GHK----WVRTRTLVDNLSPKYNEQYTWEVFDPATVLTVGVFDN  668 (1005)
Q Consensus       594 ~~g~l~v~i~~a~~L~~~~~~~~~~~~dpyv~~~~-g~~----~~~T~~~~~t~nP~wne~f~~~v~~~~~~l~i~v~d~  668 (1005)
                      ..|.|.|.|++|++|....  ..+..++|||+|++ ++.    +.+|+...+|++|-+..+..|.-.-+...|.+.||-.
T Consensus       267 ~~g~l~vEii~ar~l~~k~--~~k~~~apyVkVYlL~~g~c~ak~ktk~A~kT~~plyqq~l~f~~sp~~k~Lq~tv~gd  344 (405)
T KOG2060|consen  267 SKGDLEVEIIRARGLVVKP--GSKSLPAPYVKVYLLENGFCIAKKKTKSARKTLDPLYQQQLSFDQSPPGKYLQGTVWGD  344 (405)
T ss_pred             ccCceeEEEEecccccccC--CcccccCceeEEEEcCCCceecccccccccccCchhhhhhhhhccCCCccEEEEEEecc
Confidence            4689999999999999642  22336899999988 332    2588888999999888888888777788999999953


Q ss_pred             CCcCCCCCCCCCcccEEEEEEcccccCCC-EEeeeEeeee
Q 045058          669 SQLGEKSNGNKDLKIGKVRIRISTLETGR-IYTHSYPLLV  707 (1005)
Q Consensus       669 ~~~~~~~~~~~d~~lG~~~i~l~~l~~~~-~~~~~~~L~~  707 (1005)
                      -  +   +...+.|+|.+.|-|.+|.... ....||+|..
T Consensus       345 y--g---Rmd~k~fmg~aqi~l~eL~ls~~~~igwyKlfg  379 (405)
T KOG2060|consen  345 Y--G---RMDHKSFMGVAQIMLDELNLSSSPVIGWYKLFG  379 (405)
T ss_pred             c--c---ccchHHHhhHHHHHhhhhccccccceeeeeccC
Confidence            2  1   3458899999999999998766 7789999973

>KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only]

Probab=96.45  E-value=0.0025  Score=68.27  Aligned_cols=118  Identities=19%  Similarity=0.210  Sum_probs=87.7

Q ss_pred             EEEEEEEEeecCCCCCCCCCCCcEEEEEEC-----CeeeeeeeecCCCCCeeeeEEEEeecC---CC--------CcEEE
Q 045058          271 FLYVRVVKARELPAMDLTGSIDPFVEVKIG-----NYKGITKHYEKNQNPQWHQVFAFSRDR---MQ--------ASVLE  334 (1005)
Q Consensus       271 ~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~-----~~~~kT~~~~~~~nP~wne~f~f~~~~---~~--------~~~l~  334 (1005)
                      .|.+.|+++.+++........|-||++.+-     .++.+|.+++.+.+|.|+|.|.+.+..   ..        ...+.
T Consensus       368 elel~ivrg~~~pvp~gp~hld~fvr~efpl~nD~~qk~kt~vik~t~SPdfde~fklni~rg~~~nr~fqR~fkr~g~k  447 (523)
T KOG3837|consen  368 ELELAIVRGQKNPVPGGPMHLDQFVRLEFPLENDSRQKLKTDVIKVTPSPDFDEDFKLNIRRGPGLNREFQRRFKRLGKK  447 (523)
T ss_pred             HhHHHHhhcccCCCCCCchhHHhhhcccccccccccccCccceeeCCCCCCcccceeeeccCCCcccHHHHHHHHhcCee
Confidence            467778888887765433345778888763     256789999999999999999998765   21        24699


Q ss_pred             EEEEeCC--CCCCceeEEEEEEceecCCCCCCCCCCCCeEEEeecCCCCccceEEEEEEEEe
Q 045058          335 VVIKDKD--LVKDDFVGIVRFDINEVPLRVPPDSPLAPEWYRLEDKKGEKIKGELMLAVWIG  394 (1005)
Q Consensus       335 v~V~d~~--~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~G~i~l~~~~~  394 (1005)
                      |++|+..  +.+|.++|.|.+.|.-|...     +.....++|.+... ..-|.+.+.+.+.
T Consensus       448 feifhkggf~rSdkl~gt~nikle~Len~-----cei~e~~~l~DGRK-~vGGkLevKvRiR  503 (523)
T KOG3837|consen  448 FEIFHKGGFNRSDKLTGTGNIKLEILENM-----CEICEYLPLKDGRK-AVGGKLEVKVRIR  503 (523)
T ss_pred             EEEeeccccccccceeceeeeeehhhhcc-----cchhhceecccccc-ccCCeeEEEEEEe
Confidence            9999998  45799999999999988653     44555677776432 1568888888764

>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]

Probab=96.31  E-value=0.015  Score=68.13  Aligned_cols=112  Identities=23%  Similarity=0.357  Sum_probs=78.1

Q ss_pred             cEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-------eEeeccc-cCCCCCCceee-EEEEE-eccCccccceEEEEE
Q 045058            4 LKLGVQVVGAHNLLPKDGKGSSSAFVELYFDG-------QRFRTTI-KENDLNPVWNE-SFYFN-ISDASKLHYLTLEAY   73 (1005)
Q Consensus         4 ~~l~V~v~~a~~L~~~d~~g~~dpyv~v~~~~-------~~~~T~v-~~~t~nP~Wne-~f~f~-v~~~~~~~~~~l~v~   73 (1005)
                      +.+.|+|+++.=|-.++    ...||+|.+-|       ..+||++ ..|++||+||| .|.|. |.-++   -..|.|.
T Consensus       703 ~t~sV~VISgqFLSdrk----vgtyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpe---LA~lRia  775 (1189)
T KOG1265|consen  703 ATLSVTVISGQFLSDRK----VGTYVEVDMFGLPTDTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPE---LASLRIA  775 (1189)
T ss_pred             eeEEEEEEeeeeccccc----cCceEEEEecCCCchhhhhhhhhccccCCCCCcccccCCcccceecccc---hhheeee
Confidence            57899999999887665    34799999844       2477774 45789999985 47887 44344   2589999


Q ss_pred             EEeCCCCCCCCcccEEEEEeCCcccCCCCceeeeEecccCCCcceeeeEEEEEEEEec
Q 045058           74 IYNNIGDTNSRSFLGKVCLTGNSFVPLSDSVVLHYPLEKRGIFSHVRGELGLKVYITD  131 (1005)
Q Consensus        74 V~d~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~~~  131 (1005)
                      ||+.     +.+|||+-.+++..+..+-.    .+.|+..+...-.--.|.+.+.+.+
T Consensus       776 vyeE-----ggK~ig~RIlpvd~l~~GYr----hv~LRse~Nqpl~lp~Lfv~i~~kd  824 (1189)
T KOG1265|consen  776 VYEE-----GGKFIGQRILPVDGLNAGYR----HVCLRSESNQPLTLPALFVYIVLKD  824 (1189)
T ss_pred             eecc-----CCceeeeeccchhcccCcce----eEEecCCCCCccccceeEEEEEeec
Confidence            9997     45799999999988876532    4566655443222344555554443

>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks)

Probab=95.97  E-value=0.052  Score=52.69  Aligned_cols=107  Identities=19%  Similarity=0.207  Sum_probs=71.0

Q ss_pred             CcEEEEEEEEeecCCCCCCCCCCCcEEEEEE--CCeE----eeccccCCCCCCceeeEEEEEeccCccccceEEEEEEEe
Q 045058            3 NLKLGVQVVGAHNLLPKDGKGSSSAFVELYF--DGQR----FRTTIKENDLNPVWNESFYFNISDASKLHYLTLEAYIYN   76 (1005)
Q Consensus         3 ~~~l~V~v~~a~~L~~~d~~g~~dpyv~v~~--~~~~----~~T~v~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d   76 (1005)
                      ...++|+|++++++...+   .+|-||.+.+  +++.    ..|+-+. ..++.|||...|++.-.+-.....|.|.||+
T Consensus         7 ~~~~~v~i~~~~~~~~~~---~~~l~V~v~l~~g~~~L~~pv~T~~v~-~~~~~WnEwL~fpI~i~dLPr~ArL~iti~~   82 (158)
T cd08398           7 NSNLRIKILCATYVNVND---IDKIYVRTGIYHGGEPLCDNVNTQRVP-CSNPRWNEWLDYDIYIPDLPRSARLCLSICS   82 (158)
T ss_pred             CCCeEEEEEeeccCCCCC---cCeEEEEEEEEECCEEccCeeEecccC-CCCCccceeEEcccchhcCChhheEEEEEEE
Confidence            357899999999987643   4688888864  5542    3454333 3679999999999754444456789999998


Q ss_pred             CCCCCC---CCcccEEEEEeCCcccCCCCceeeeEecccCCCcceeeeEEEEEEEEe
Q 045058           77 NIGDTN---SRSFLGKVCLTGNSFVPLSDSVVLHYPLEKRGIFSHVRGELGLKVYIT  130 (1005)
Q Consensus        77 ~~~~~~---~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~~  130 (1005)
                      .....+   ....||.+.++|-+..  +       .        -.+|...+.++..
T Consensus        83 ~~~~~~~k~~~~~iG~~ni~LFd~~--~-------~--------Lr~G~~~L~lW~~  122 (158)
T cd08398          83 VKGRKGAKEEHCPLAWGNINLFDYT--D-------T--------LVSGKMALNLWPV  122 (158)
T ss_pred             EecccCCCCceEEEEEEEEEEECCC--C-------h--------hhCCCEEEEEEcC
Confidence            642111   2246888888854411  1       1        1268888888753

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c

>PF15627 CEP76-C2: CEP76 C2 domain

Probab=95.77  E-value=0.13  Score=49.18  Aligned_cols=125  Identities=16%  Similarity=0.083  Sum_probs=85.7

Q ss_pred             eeEEEEEEEEeecCCCCCC----CCCCCcEEEEEECCeeeeeeeecCCCCCeeeeEEEEeecCCC-------------Cc
Q 045058          269 MYFLYVRVVKARELPAMDL----TGSIDPFVEVKIGNYKGITKHYEKNQNPQWHQVFAFSRDRMQ-------------AS  331 (1005)
Q Consensus       269 ~~~L~V~v~~a~~L~~~~~----~g~~dPyv~v~~~~~~~kT~~~~~~~nP~wne~f~f~~~~~~-------------~~  331 (1005)
                      ..+|+++|..++-....-.    ...+--++-+.+++|+++|+.+..+.+|.|+|.|.|.+....             .+
T Consensus         8 ~~yL~l~vlgGkAFld~l~~~~~~~~s~~~l~l~f~~QRF~S~~Vp~~~eP~f~e~Flf~l~~~~~~~~~~~~~lls~~~   87 (156)
T PF15627_consen    8 RRYLHLRVLGGKAFLDHLQEPEGQVCSTFTLHLHFRGQRFRSKPVPCACEPDFNEEFLFELPRDSFGAGSTATTLLSISD   87 (156)
T ss_pred             ceEEEEEEeCchhHhhhhhccCCCCceEEEEEEEecCceEecCCcccccCCCCCCcEEEEecccccccccchhHhhcCCC
Confidence            3679999999886543211    122223555667899999999999999999999999865321             35


Q ss_pred             EEEEEEEeCC-CCCCceeEEEEEEceecCCCCCCCCCCCCeEEEeecCCCC-c-cceEEEEEEEEecc
Q 045058          332 VLEVVIKDKD-LVKDDFVGIVRFDINEVPLRVPPDSPLAPEWYRLEDKKGE-K-IKGELMLAVWIGTQ  396 (1005)
Q Consensus       332 ~l~v~V~d~~-~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~-~-~~G~i~l~~~~~~~  396 (1005)
                      +|++.|.--+ .+...++|...++.+.+.....   .....-..|.+.... + ..|-+.+++...|.
T Consensus        88 pihivli~~d~~~~~~Lv~s~~ldWR~vL~s~~---~~~~~~vEL~G~~~e~kv~~GiL~l~lELlP~  152 (156)
T PF15627_consen   88 PIHIVLIRTDPSGETTLVGSHFLDWRKVLCSGN---GSTSFTVELCGVGPESKVPVGILDLRLELLPN  152 (156)
T ss_pred             ceEEEEEEecCCCceEeeeeceehHHHHhccCC---CccceeEEEeccCCCCccceeEEEEEEEeecC
Confidence            7888888777 5556899999999998876422   111223455544333 2 67988888876653

>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks)

Probab=95.59  E-value=0.084  Score=52.35  Aligned_cols=73  Identities=22%  Similarity=0.284  Sum_probs=52.4

Q ss_pred             cEEEEEEEEeecCCCCCCCCCCCcEEEEEE--CCe----EeeccccCCCCCCceeeEEEEEeccCccccceEEEEEEEeC
Q 045058            4 LKLGVQVVGAHNLLPKDGKGSSSAFVELYF--DGQ----RFRTTIKENDLNPVWNESFYFNISDASKLHYLTLEAYIYNN   77 (1005)
Q Consensus         4 ~~l~V~v~~a~~L~~~d~~g~~dpyv~v~~--~~~----~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~   77 (1005)
                      ..++|+|+++.+|..+  ....+-||.+.+  +++    ...|+.+.-..++.|||.+.|++.-.+-.....|.|.||+.
T Consensus         8 ~~f~i~i~~~~~~~~~--~~~~~l~V~~~lyhG~~~L~~p~~T~~~~~~~~~~Wnewl~F~I~i~dLPr~ArLciti~~~   85 (173)
T cd08693           8 EKFSITLHKISNLNAA--ERTMKVGVQAGLFHGGESLCKTVKTSEVSGKNDPVWNETLEFDINVCDLPRMARLCFAIYEV   85 (173)
T ss_pred             CCEEEEEEEeccCccC--CCCceEEEEEEEEECCEEccCceEccccCCCCccccceeEEcccchhcCChhHeEEEEEEEe
Confidence            5789999999999862  234666777653  554    24666555557799999999987544434567899999986


Q ss_pred             C
Q 045058           78 I   78 (1005)
Q Consensus        78 ~   78 (1005)
                      .
T Consensus        86 ~   86 (173)
T cd08693          86 S   86 (173)
T ss_pred             c
Confidence            3

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty

>PF08372 PRT_C: Plant phosphoribosyltransferase C-terminal; InterPro: IPR013583 This domain is found at the C terminus of phosphoribosyltransferases and phosphoribosyltransferase-like proteins

Probab=95.24  E-value=0.085  Score=50.45  Aligned_cols=58  Identities=22%  Similarity=0.366  Sum_probs=43.8

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHhhcccccCCchhHHHHHHHHHHHHhcccchHHHHHH
Q 045058          797 RRSKANFFRLMTVFSGLFAVGKWFADICMWKNPITTVLVHVLYLMLACFPELILPTVFL  855 (1005)
Q Consensus       797 ~~~k~n~~rl~~~~~~~~~~~~~~~~l~~W~~p~~t~~~~~~~~~~~~~~~l~~p~~~l  855 (1005)
                      .+++.=..|++.++..+-..+..++.+++|++|..|.++++++++++.. .+++|+=.+
T Consensus        62 drlr~va~rvQ~vlgd~At~gERl~allsWrdP~aT~lf~~~clv~avv-ly~vP~r~l  119 (156)
T PF08372_consen   62 DRLRSVAGRVQNVLGDVATQGERLQALLSWRDPRATALFVVFCLVAAVV-LYFVPFRVL  119 (156)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccHHHHHHHHHHHHHHH-HHHhhHHHH
Confidence            3556667777788888888999999999999999999998777776543 334554333

It contains putative transmembrane regions. It often appears together with calcium-ion dependent C2 domains (IPR000008 from INTERPRO).

>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]

Probab=95.20  E-value=0.069  Score=62.86  Aligned_cols=110  Identities=21%  Similarity=0.291  Sum_probs=78.3

Q ss_pred             cceEEEEEEEEecCCCCCCCCCCCCCCCcEEEEEE-C------CEEEEeeecc-CCCCceecc-EEEEEEe--CCCceEE
Q 045058          594 SIGILELGILNAVGLHPMKTRDGRGTSDTYCVAKY-G------HKWVRTRTLV-DNLSPKYNE-QYTWEVF--DPATVLT  662 (1005)
Q Consensus       594 ~~g~l~v~i~~a~~L~~~~~~~~~~~~dpyv~~~~-g------~~~~~T~~~~-~t~nP~wne-~f~~~v~--~~~~~l~  662 (1005)
                      -.+.+.|+|+.++=|..++       .-.||.|.+ |      .+.+||+++. +++||+|+| .|.|.-.  ..-..|.
T Consensus       701 IA~t~sV~VISgqFLSdrk-------vgtyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpeLA~lR  773 (1189)
T KOG1265|consen  701 IAATLSVTVISGQFLSDRK-------VGTYVEVDMFGLPTDTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPELASLR  773 (1189)
T ss_pred             EEeeEEEEEEeeeeccccc-------cCceEEEEecCCCchhhhhhhhhccccCCCCCcccccCCcccceecccchhhee
Confidence            3589999999999887432       347999987 3      1347999988 569999996 5777532  2357999


Q ss_pred             EEEEeCCCcCCCCCCCCCcccEEEEEEcccccCCCEEeeeEeeeecCCCCCceeeEEEEEEE
Q 045058          663 VGVFDNSQLGEKSNGNKDLKIGKVRIRISTLETGRIYTHSYPLLVLHPTGVKKMGELHLAIR  724 (1005)
Q Consensus       663 i~v~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~G~i~l~~~  724 (1005)
                      |.||++          ...+||.-.+|+..|..|-   +..-|.+....-... -.|.+.+.
T Consensus       774 iavyeE----------ggK~ig~RIlpvd~l~~GY---rhv~LRse~Nqpl~l-p~Lfv~i~  821 (1189)
T KOG1265|consen  774 IAVYEE----------GGKFIGQRILPVDGLNAGY---RHVCLRSESNQPLTL-PALFVYIV  821 (1189)
T ss_pred             eeeecc----------CCceeeeeccchhcccCcc---eeEEecCCCCCcccc-ceeEEEEE
Confidence            999998          5689999999999999986   445565443332222 34444444

>KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]

Probab=95.13  E-value=0.044  Score=56.73  Aligned_cols=116  Identities=18%  Similarity=0.155  Sum_probs=78.0

Q ss_pred             CcEEEEEEEEeecCCCCCC--CCCCCcEEEEEECCe-EeeccccCCCCCCceeeEEEEEeccCccccceEEEEEEEeCCC
Q 045058            3 NLKLGVQVVGAHNLLPKDG--KGSSSAFVELYFDGQ-RFRTTIKENDLNPVWNESFYFNISDASKLHYLTLEAYIYNNIG   79 (1005)
Q Consensus         3 ~~~l~V~v~~a~~L~~~d~--~g~~dpyv~v~~~~~-~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~   79 (1005)
                      .|.|.++++.+|||.-...  +-+-+-||++.++.+ +.||.+.....-=.|.|+|..++.+.+     .+.+-||.++.
T Consensus        50 tGiL~~H~~~GRGLr~~p~~kglt~~~ycVle~drqh~aRt~vrs~~~~f~w~e~F~~Dvv~~~-----vl~~lvySW~p  124 (442)
T KOG1452|consen   50 TGILYFHAYNGRGLRMTPQQKGLTVCFYCVLEPDRQHPARTRVRSSGPGFAWAEDFKHDVVNIE-----VLHYLVYSWPP  124 (442)
T ss_pred             cceEEEEEecccccccChhccCceeeeeeeeeecccCccccccccCCCCccchhhceeecccce-----eeeEEEeecCc
Confidence            4789999999999975433  345689999999876 788888877777789999999987654     78889998854


Q ss_pred             CCCCCcccEEEEEeCCcccCCCCceeeeEecccCCCcceeeeEEEEEEEEec
Q 045058           80 DTNSRSFLGKVCLTGNSFVPLSDSVVLHYPLEKRGIFSHVRGELGLKVYITD  131 (1005)
Q Consensus        80 ~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~~~  131 (1005)
                      .. ++++.-.-.+.+..+...+.....-+.|++       +|.+.+.+.+.+
T Consensus       125 q~-RHKLC~~g~l~~~~v~rqspd~~~Al~leP-------rgq~~~r~~~~D  168 (442)
T KOG1452|consen  125 QR-RHKLCHLGLLEAFVVDRQSPDRVVALYLEP-------RGQPPLRLPLAD  168 (442)
T ss_pred             hh-hccccccchhhhhhhhhcCCcceeeeeccc-------CCCCceecccCC
Confidence            33 444432223343333333322112244543       577888876655

>PF15627 CEP76-C2: CEP76 C2 domain

Probab=95.00  E-value=0.33  Score=46.47  Aligned_cols=126  Identities=13%  Similarity=0.185  Sum_probs=83.5

Q ss_pred             cceEEEEEEEEecCCCCCCCCCCCCCCCc--EEEEEECCEEEEeeeccCCCCceeccEEEEEEeCC--------------
Q 045058          594 SIGILELGILNAVGLHPMKTRDGRGTSDT--YCVAKYGHKWVRTRTLVDNLSPKYNEQYTWEVFDP--------------  657 (1005)
Q Consensus       594 ~~g~l~v~i~~a~~L~~~~~~~~~~~~dp--yv~~~~g~~~~~T~~~~~t~nP~wne~f~~~v~~~--------------  657 (1005)
                      ..-.|.++|++++-..--- .+..+..+.  ++-+.+++++++|+.+.-+.+|.|+|.|-|++...              
T Consensus         7 ~~~yL~l~vlgGkAFld~l-~~~~~~~~s~~~l~l~f~~QRF~S~~Vp~~~eP~f~e~Flf~l~~~~~~~~~~~~~lls~   85 (156)
T PF15627_consen    7 GRRYLHLRVLGGKAFLDHL-QEPEGQVCSTFTLHLHFRGQRFRSKPVPCACEPDFNEEFLFELPRDSFGAGSTATTLLSI   85 (156)
T ss_pred             CceEEEEEEeCchhHhhhh-hccCCCCceEEEEEEEecCceEecCCcccccCCCCCCcEEEEecccccccccchhHhhcC
Confidence            3456888888888554210 011133333  34456699999999999999999999999988532              


Q ss_pred             CceEEEEEEeCCCcCCCCCCCCCcccEEEEEEcccccCCCEE--eeeEeeeecCCCCCceeeEEEEEEEEe
Q 045058          658 ATVLTVGVFDNSQLGEKSNGNKDLKIGKVRIRISTLETGRIY--THSYPLLVLHPTGVKKMGELHLAIRFS  726 (1005)
Q Consensus       658 ~~~l~i~v~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~--~~~~~L~~~~~~~~~~~G~i~l~~~~~  726 (1005)
                      ++.|++-|.-.|..+      ...++|.-.+.-..+......  .....|...........|.|++++..-
T Consensus        86 ~~pihivli~~d~~~------~~~Lv~s~~ldWR~vL~s~~~~~~~~vEL~G~~~e~kv~~GiL~l~lELl  150 (156)
T PF15627_consen   86 SDPIHIVLIRTDPSG------ETTLVGSHFLDWRKVLCSGNGSTSFTVELCGVGPESKVPVGILDLRLELL  150 (156)
T ss_pred             CCceEEEEEEecCCC------ceEeeeeceehHHHHhccCCCccceeEEEeccCCCCccceeEEEEEEEee
Confidence            357888888877543      458899989888776543321  334445433333222469999998863

>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks)

Probab=94.70  E-value=0.18  Score=49.35  Aligned_cols=109  Identities=18%  Similarity=0.195  Sum_probs=70.9

Q ss_pred             cEEEEEEEEeecCCCCCCCCCCCcEEEEEE--CCe----EeeccccCCCCCCceeeEEEEEeccCccccceEEEEEEEeC
Q 045058            4 LKLGVQVVGAHNLLPKDGKGSSSAFVELYF--DGQ----RFRTTIKENDLNPVWNESFYFNISDASKLHYLTLEAYIYNN   77 (1005)
Q Consensus         4 ~~l~V~v~~a~~L~~~d~~g~~dpyv~v~~--~~~----~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~   77 (1005)
                      ..++|+|++..++...+ ....+-||.+.+  +++    ...|.......++.|||...|++.-.+-.....|.|.||+.
T Consensus         8 ~~~~i~i~~~~~~~~~~-~~~~~l~V~~~l~~g~~~l~~~~~t~~~~~~~~~~Wne~l~F~i~~~~LP~~arL~itl~~~   86 (156)
T cd08380           8 FNLRIKIHGITNINLLD-SEDLKLYVRVQLYHGGEPLCPPQSTKKVPFSTSVTWNEWLTFDILISDLPREARLCLSIYAV   86 (156)
T ss_pred             CCeEEEEEeeccccccC-CCceeEEEEEEEEECCEEccCceeccCCcCCCCCcccceeEccchhhcCChhheEEEEEEEE
Confidence            46889999998886511 224566777654  554    23444444447899999999997544444567899999997


Q ss_pred             CCCC-CCCcccEEEEEeCCcccCCCCceeeeEecccCCCcceeeeEEEEEEEEe
Q 045058           78 IGDT-NSRSFLGKVCLTGNSFVPLSDSVVLHYPLEKRGIFSHVRGELGLKVYIT  130 (1005)
Q Consensus        78 ~~~~-~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~~  130 (1005)
                      .... ..+..||.+.++|-+..  +       .        -.+|...+.++-.
T Consensus        87 ~~~~~~~~~~iG~~~~~lFd~~--~-------~--------L~~G~~~l~lW~~  123 (156)
T cd08380          87 SEPGSKKEVPLGWVNVPLFDYK--G-------K--------LRQGMITLNLWPG  123 (156)
T ss_pred             ecCCCCcceEEEEEeEEeEccc--C-------c--------EecCCEEEeccCC
Confidence            4322 14678999998854421  1       0        2368888888643

C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm

>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []

Probab=94.32  E-value=0.89  Score=43.64  Aligned_cols=120  Identities=16%  Similarity=0.282  Sum_probs=78.0

Q ss_pred             cEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeE---eeccc-cCCCCCCceeeEEEEEecc----C-ccccceEEEEEE
Q 045058            4 LKLGVQVVGAHNLLPKDGKGSSSAFVELYFDGQR---FRTTI-KENDLNPVWNESFYFNISD----A-SKLHYLTLEAYI   74 (1005)
Q Consensus         4 ~~l~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~---~~T~v-~~~t~nP~Wne~f~f~v~~----~-~~~~~~~l~v~V   74 (1005)
                      ..+.|+|++..+++.    ....-||....++..   .+|.. ....-.-.|||.|.+.+.-    . ..++...+.|.|
T Consensus         7 f~~~l~i~~l~~~p~----~~~~v~v~wkr~~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~~~v   82 (143)
T PF10358_consen    7 FQFDLTIHELENLPS----SNGKVFVKWKRGDKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKELKFSV   82 (143)
T ss_pred             EEEEEEEEEeECcCC----CCCEEEEEEEECCCCccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEEEEEE
Confidence            467899999999876    223445555444442   44442 2234457899999998631    1 125677899999


Q ss_pred             EeCCCCCCCCcccEEEEEeCCcccCCC-CceeeeEecccCCCcceeeeEEEEEEEEec
Q 045058           75 YNNIGDTNSRSFLGKVCLTGNSFVPLS-DSVVLHYPLEKRGIFSHVRGELGLKVYITD  131 (1005)
Q Consensus        75 ~d~~~~~~~d~~lG~~~i~l~~l~~~~-~~~~~w~~L~~~~~~~~~~G~i~l~~~~~~  131 (1005)
                      +..... +....||.+.|.|+++.... ......++|.+..   .....+.+++.+..
T Consensus        83 ~~~~~~-~~k~~lG~~~inLaey~~~~~~~~~~~~~l~~~~---~~~a~L~isi~~~~  136 (143)
T PF10358_consen   83 FEVDGS-GKKKVLGKVSINLAEYANEDEEPITVRLLLKKCK---KSNATLSISISLSE  136 (143)
T ss_pred             EEecCC-CccceEEEEEEEHHHhhCcCCCcEEEEEeCccCC---CCCcEEEEEEEEEE
Confidence            986322 22369999999999987754 3333458887652   33567777777655

Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).

>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks)

Probab=94.25  E-value=0.26  Score=48.84  Aligned_cols=87  Identities=22%  Similarity=0.232  Sum_probs=61.1

Q ss_pred             EEEEEEEEeeeCCCCCCCCCCCcEEEEEE--CCeEE----eeecccCCCCCcccccEEEEEee---CCCCCeEEEEEEec
Q 045058          435 YVRVNVVEAQDLVPTEKNHFPDVYVKAQI--GNQVL----KTKICQARTLSAVWNEDLLFVAA---EPFEDHLVLTVEDR  505 (1005)
Q Consensus       435 ~L~V~v~~a~~L~~~d~~~~~dpyv~v~l--g~~~~----kT~~~~~~t~~P~w~e~f~f~v~---~~~~~~l~i~V~d~  505 (1005)
                      .++|+|+.+.+|..  .....+-||++.+  |++..    .|+.+. ....+.|||.+.|++.   .|.+..|.|+||+.
T Consensus         9 ~f~i~i~~~~~~~~--~~~~~~l~V~~~lyhG~~~L~~p~~T~~~~-~~~~~~Wnewl~F~I~i~dLPr~ArLciti~~~   85 (173)
T cd08693           9 KFSITLHKISNLNA--AERTMKVGVQAGLFHGGESLCKTVKTSEVS-GKNDPVWNETLEFDINVCDLPRMARLCFAIYEV   85 (173)
T ss_pred             CEEEEEEEeccCcc--CCCCceEEEEEEEEECCEEccCceEccccC-CCCccccceeEEcccchhcCChhHeEEEEEEEe
Confidence            58999999999975  2234567888766  66533    455443 3567999999999764   34677999999987


Q ss_pred             cCCC----------------CCceeEEEEEccccc
Q 045058          506 VGPG----------------KDEIIGRVIIPLSAI  524 (1005)
Q Consensus       506 d~~~----------------~d~~iG~~~i~l~~l  524 (1005)
                      ....                ....||.+.+.|-+.
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~ig~~n~~LFd~  120 (173)
T cd08693          86 SKKAKGKRSRKNQTKKKKKKDDNPIAWVNTMVFDY  120 (173)
T ss_pred             cccccccccccccccccccCcceEEEEEeEEEEcc
Confidence            5321                246888888887653

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty

>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks)

Probab=93.80  E-value=0.41  Score=46.51  Aligned_cols=85  Identities=21%  Similarity=0.253  Sum_probs=61.2

Q ss_pred             EEEEEEEEeeeCCCCCCCCCCCcEEEEEE--CCeEE----eeecccCCCCCcccccEEEEEeeC---CCCCeEEEEEEec
Q 045058          435 YVRVNVVEAQDLVPTEKNHFPDVYVKAQI--GNQVL----KTKICQARTLSAVWNEDLLFVAAE---PFEDHLVLTVEDR  505 (1005)
Q Consensus       435 ~L~V~v~~a~~L~~~d~~~~~dpyv~v~l--g~~~~----kT~~~~~~t~~P~w~e~f~f~v~~---~~~~~l~i~V~d~  505 (1005)
                      .++|+|+++.++...   ...|-||++.+  |++..    .|+.+.  ..++.|||-+.|++.-   |.+..|.|+||+.
T Consensus         9 ~~~v~i~~~~~~~~~---~~~~l~V~v~l~~g~~~L~~pv~T~~v~--~~~~~WnEwL~fpI~i~dLPr~ArL~iti~~~   83 (158)
T cd08398           9 NLRIKILCATYVNVN---DIDKIYVRTGIYHGGEPLCDNVNTQRVP--CSNPRWNEWLDYDIYIPDLPRSARLCLSICSV   83 (158)
T ss_pred             CeEEEEEeeccCCCC---CcCeEEEEEEEEECCEEccCeeEecccC--CCCCccceeEEcccchhcCChhheEEEEEEEE
Confidence            588999999998753   24688888877  65433    455443  3689999999997742   4677999999997


Q ss_pred             cCCC----CCceeEEEEEccccc
Q 045058          506 VGPG----KDEIIGRVIIPLSAI  524 (1005)
Q Consensus       506 d~~~----~d~~iG~~~i~l~~l  524 (1005)
                      ...+    ....+|.+.+.|-+.
T Consensus        84 ~~~~~~k~~~~~iG~~ni~LFd~  106 (158)
T cd08398          84 KGRKGAKEEHCPLAWGNINLFDY  106 (158)
T ss_pred             ecccCCCCceEEEEEEEEEEECC
Confidence            5421    235699999988663

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c

>cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins

Probab=93.70  E-value=0.69  Score=39.38  Aligned_cols=83  Identities=20%  Similarity=0.165  Sum_probs=56.7

Q ss_pred             CCcEEEEEECCe-EeeccccCCCCCCceeeEEEEEeccCccccceEEEEEEEeCCCCCCCCcccEEEEEeCCcccCCCCc
Q 045058           25 SSAFVELYFDGQ-RFRTTIKENDLNPVWNESFYFNISDASKLHYLTLEAYIYNNIGDTNSRSFLGKVCLTGNSFVPLSDS  103 (1005)
Q Consensus        25 ~dpyv~v~~~~~-~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~~~~~d~~lG~~~i~l~~l~~~~~~  103 (1005)
                      ++-.+++.+++. ...|.-+. -.+..||+.|.|++...     ..|+|.||-+|-    ....|-.-+.|.+...    
T Consensus         9 ~eV~avLklDn~~VgqT~Wk~-~s~q~WDQ~Fti~LdRs-----RELEI~VywrD~----RslCav~~lrLEd~~~----   74 (98)
T cd08687           9 SEVSAVLKLDNTVVGQTQWKP-KSNQAWDQSFTLELERS-----RELEIAVYWRDW----RSLCAVKFLKLEDERH----   74 (98)
T ss_pred             cceEEEEEEcCeEEeeccccc-cccccccceeEEEeecc-----cEEEEEEEEecc----hhhhhheeeEhhhhcc----
Confidence            567899999874 67777553 36789999999998543     489999998742    4477777777777311    


Q ss_pred             eeeeEecccCCCcceeeeEEEEEEEE
Q 045058          104 VVLHYPLEKRGIFSHVRGELGLKVYI  129 (1005)
Q Consensus       104 ~~~w~~L~~~~~~~~~~G~i~l~~~~  129 (1005)
                       ....+|++       +|.+...+.|
T Consensus        75 -~~~~~lep-------qg~l~~ev~f   92 (98)
T cd08687          75 -EVQLDMEP-------QLCLVAELTF   92 (98)
T ss_pred             -cceecccc-------ccEEEEEEEe
Confidence             13456654       4566655544

PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct

>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []

Probab=93.57  E-value=1.8  Score=41.49  Aligned_cols=114  Identities=23%  Similarity=0.249  Sum_probs=76.8

Q ss_pred             eEEEEEEEEecCCCCCCCCCCCCCCCcEEEEEECCEE---EEeeecc-CCCCceeccEEEEEEe---CC------CceEE
Q 045058          596 GILELGILNAVGLHPMKTRDGRGTSDTYCVAKYGHKW---VRTRTLV-DNLSPKYNEQYTWEVF---DP------ATVLT  662 (1005)
Q Consensus       596 g~l~v~i~~a~~L~~~~~~~~~~~~dpyv~~~~g~~~---~~T~~~~-~t~nP~wne~f~~~v~---~~------~~~l~  662 (1005)
                      -.+.|.|.+..+++.       .....||+.+.|+..   ..|.... .+..-.||+.|.+++.   +.      ...+.
T Consensus         7 f~~~l~i~~l~~~p~-------~~~~v~v~wkr~~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~   79 (143)
T PF10358_consen    7 FQFDLTIHELENLPS-------SNGKVFVKWKRGDKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKELK   79 (143)
T ss_pred             EEEEEEEEEeECcCC-------CCCEEEEEEEECCCCccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEEE
Confidence            467888999999884       223566666667653   4554433 4567899999999874   22      23688


Q ss_pred             EEEEeCCCcCCCCCCCCCcccEEEEEEcccccCC--CEEeeeEeeeecCCCCCceeeEEEEEEEEe
Q 045058          663 VGVFDNSQLGEKSNGNKDLKIGKVRIRISTLETG--RIYTHSYPLLVLHPTGVKKMGELHLAIRFS  726 (1005)
Q Consensus       663 i~v~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~--~~~~~~~~L~~~~~~~~~~~G~i~l~~~~~  726 (1005)
                      |.|+....-+      +...||.+.|+|+++.+.  ......++|...    ......|++.+++.
T Consensus        80 ~~v~~~~~~~------~k~~lG~~~inLaey~~~~~~~~~~~~~l~~~----~~~~a~L~isi~~~  135 (143)
T PF10358_consen   80 FSVFEVDGSG------KKKVLGKVSINLAEYANEDEEPITVRLLLKKC----KKSNATLSISISLS  135 (143)
T ss_pred             EEEEEecCCC------ccceEEEEEEEHHHhhCcCCCcEEEEEeCccC----CCCCcEEEEEEEEE
Confidence            9999874211      226999999999998773  566778888632    12346777777764

Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).

>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks)

Probab=93.25  E-value=0.56  Score=46.39  Aligned_cols=73  Identities=23%  Similarity=0.241  Sum_probs=49.4

Q ss_pred             cEEEEEEEEeecCCCCCCCCCCCcEEEEEE--CCe---EeeccccCCCCCCceeeEEEEEeccCccccceEEEEEEEeC
Q 045058            4 LKLGVQVVGAHNLLPKDGKGSSSAFVELYF--DGQ---RFRTTIKENDLNPVWNESFYFNISDASKLHYLTLEAYIYNN   77 (1005)
Q Consensus         4 ~~l~V~v~~a~~L~~~d~~g~~dpyv~v~~--~~~---~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~   77 (1005)
                      ..++|+|+++..+.. +......-||++.+  +++   ..+|+.+.-+.++.|||.+.|++.-.+-.....|.|.||+.
T Consensus        10 ~~friki~~~~~~~~-~~~~~~~l~V~~~Ly~g~~~l~~~~T~~~~~~~~~~WnEwL~f~I~~~dLP~~arLc~ti~~~   87 (178)
T cd08399          10 RKFRVKILGIDIPVL-PRNTDLTVFVEANIQHGQQVLCQRRTSPKPFTEEVLWNTWLEFDIKIKDLPKGALLNLQIYCG   87 (178)
T ss_pred             CCEEEEEEeecccCc-CCCCceEEEEEEEEEECCeecccceeeccCCCCCccccccEECccccccCChhhEEEEEEEEE
Confidence            468899999984432 22222345555533  444   23666666677899999999997655545567899999996

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir

>PF02453 Reticulon: Reticulon; InterPro: IPR003388 Eukaryotic proteins of the reticulon (RTN) family all share an association with the endoplasmic reticulum (ER)

Probab=93.23  E-value=0.026  Score=56.17  Aligned_cols=62  Identities=11%  Similarity=0.127  Sum_probs=18.3

Q ss_pred             HHHHhHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCccCCCC
Q 045058          925 GDVATQGERLQALISWRDPRATAIFITFCLVAALVLFLTPFQVIAALAGFWVMRHPRFRRRL  986 (1005)
Q Consensus       925 ~~~a~~~e~~~~l~~w~~p~~t~~~~~~~~~~~~v~~~iP~r~i~l~~g~~~~~~P~f~~~~  986 (1005)
                      ..++..+..++.++.|++|..|..++.+|++.+.+..+++...++.++.+.++-=|.+....
T Consensus        91 ~~~n~~~~~~~~l~~~~~~~~~l~~~~~l~~l~~lg~~~s~~~L~~l~~~~~f~~P~ly~~~  152 (169)
T PF02453_consen   91 EWINSVLSWLRRLVFGEDPKKSLKVFVVLYILSFLGSWFSFLTLLYLGVLGAFTVPKLYEKY  152 (169)
T ss_dssp             CCCCHHHHHHHCCCHCT-TTGGG---------------------------------------
T ss_pred             HHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHhhHHHHHHH
Confidence            45555688889999999999999999999888888888887776666555444445444433

Whereas amino-terminal regions are not related to one another, all reticulon proteins share a 200 amino acid residue region of sequence similarity at the C-terminal. This region contains two large hydrophobic regions separated by a 66 residue hydrophilic segment. The conserved hydrophobic C-terminal portion has been shown to play an essential role in the association of reticulons with the ER membrane. The hydrophobic portions are supposed to be membrane-embedded and the hydrophilic 66 residue localized to the lumenal/extracellular face of the membrane. Most reticulons have a di-lysine ER retention motif at the C-terminal. Because of their likely association with the rough as well as the smooth ER, the reticulons might play some role in transport processes or in regulation of intracellular calcium levels. It has been suggested that the reticulons may be serving as ER-associated channel-like complexes [, , , ].; GO: 0005783 endoplasmic reticulum; PDB: 2KO2_A 2JV5_A 2G31_A.

>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks)

Probab=92.98  E-value=0.57  Score=45.81  Aligned_cols=88  Identities=27%  Similarity=0.380  Sum_probs=60.5

Q ss_pred             EEEEEEEEeeeCCCCCCCCCCCcEEEEEE--CCeE----EeeecccCCCCCcccccEEEEEee---CCCCCeEEEEEEec
Q 045058          435 YVRVNVVEAQDLVPTEKNHFPDVYVKAQI--GNQV----LKTKICQARTLSAVWNEDLLFVAA---EPFEDHLVLTVEDR  505 (1005)
Q Consensus       435 ~L~V~v~~a~~L~~~d~~~~~dpyv~v~l--g~~~----~kT~~~~~~t~~P~w~e~f~f~v~---~~~~~~l~i~V~d~  505 (1005)
                      .++|.+....++... .....+-||++.+  |++.    ..|+... ...++.|||.+.|++.   -|.+..|.|+||+.
T Consensus         9 ~~~i~i~~~~~~~~~-~~~~~~l~V~~~l~~g~~~l~~~~~t~~~~-~~~~~~Wne~l~F~i~~~~LP~~arL~itl~~~   86 (156)
T cd08380           9 NLRIKIHGITNINLL-DSEDLKLYVRVQLYHGGEPLCPPQSTKKVP-FSTSVTWNEWLTFDILISDLPREARLCLSIYAV   86 (156)
T ss_pred             CeEEEEEeecccccc-CCCceeEEEEEEEEECCEEccCceeccCCc-CCCCCcccceeEccchhhcCChhheEEEEEEEE
Confidence            477888887777541 1234577777766  5542    2333332 3368999999999763   34677999999998


Q ss_pred             cCCC--CCceeEEEEEccccc
Q 045058          506 VGPG--KDEIIGRVIIPLSAI  524 (1005)
Q Consensus       506 d~~~--~d~~iG~~~i~l~~l  524 (1005)
                      +..+  .+..||.+.++|-+.
T Consensus        87 ~~~~~~~~~~iG~~~~~lFd~  107 (156)
T cd08380          87 SEPGSKKEVPLGWVNVPLFDY  107 (156)
T ss_pred             ecCCCCcceEEEEEeEEeEcc
Confidence            6543  568999999998664

C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm

>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks)

Probab=92.93  E-value=0.5  Score=46.06  Aligned_cols=91  Identities=23%  Similarity=0.218  Sum_probs=63.1

Q ss_pred             CCCCcEEEEEE--CCe----EeeccccCCCCCCceeeEEEEEeccCccccceEEEEEEEeCCCCCCCCcccEEEEEeCCc
Q 045058           23 GSSSAFVELYF--DGQ----RFRTTIKENDLNPVWNESFYFNISDASKLHYLTLEAYIYNNIGDTNSRSFLGKVCLTGNS   96 (1005)
Q Consensus        23 g~~dpyv~v~~--~~~----~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~~~~~d~~lG~~~i~l~~   96 (1005)
                      ..+|-||.+.+  +++    ...|+.+.-+..+.|||...|++.-.+-.....|.|.||+... .+....+|.+.++|-+
T Consensus        28 ~~~~l~V~~~l~~~~~~L~~pv~T~~~~f~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~-~~~~~~vg~~~~~lFd  106 (159)
T cd08397          28 PNSDLFVTCQVFDDGKPLTLPVQTSYKPFKNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSG-TGKAVPFGGTTLSLFN  106 (159)
T ss_pred             CCCCEEEEEEEEECCEeccCcEEccccCCCCCcccceeEEcccchhcCChhheEEEEEEEecC-CCCceEEEEEEEeeEC
Confidence            35788888865  444    2466666656778999999999865544456789999999743 3356789999888544


Q ss_pred             ccCCCCceeeeEecccCCCcceeeeEEEEEEEEec
Q 045058           97 FVPLSDSVVLHYPLEKRGIFSHVRGELGLKVYITD  131 (1005)
Q Consensus        97 l~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~~~  131 (1005)
                      -  .+       .        -.+|...+.++...
T Consensus       107 ~--~g-------~--------Lr~G~~~l~lw~~~  124 (159)
T cd08397         107 K--DG-------T--------LRRGRQKLRVWPDV  124 (159)
T ss_pred             C--CC-------c--------EecCCEEEEEEeCC
Confidence            2  11       0        23688889987555

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty

>KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]

Probab=92.69  E-value=0.24  Score=51.49  Aligned_cols=129  Identities=20%  Similarity=0.235  Sum_probs=80.6

Q ss_pred             CcceEEEEEEEEecCCCCCCCCCCCCCCCcEEEEEECCE-EEEeeeccCCCCceeccEEEEEEeCCCceEEEEEEeCCCc
Q 045058          593 PSIGILELGILNAVGLHPMKTRDGRGTSDTYCVAKYGHK-WVRTRTLVDNLSPKYNEQYTWEVFDPATVLTVGVFDNSQL  671 (1005)
Q Consensus       593 ~~~g~l~v~i~~a~~L~~~~~~~~~~~~dpyv~~~~g~~-~~~T~~~~~t~nP~wne~f~~~v~~~~~~l~i~v~d~~~~  671 (1005)
                      ...|.|.+.+++++||.-... ..+-.-+-||++....+ ..||.+......-.|.|.|..++... .++.+-||.|+.-
T Consensus        48 s~tGiL~~H~~~GRGLr~~p~-~kglt~~~ycVle~drqh~aRt~vrs~~~~f~w~e~F~~Dvv~~-~vl~~lvySW~pq  125 (442)
T KOG1452|consen   48 SSTGILYFHAYNGRGLRMTPQ-QKGLTVCFYCVLEPDRQHPARTRVRSSGPGFAWAEDFKHDVVNI-EVLHYLVYSWPPQ  125 (442)
T ss_pred             cccceEEEEEecccccccChh-ccCceeeeeeeeeecccCccccccccCCCCccchhhceeecccc-eeeeEEEeecCch
Confidence            346999999999999985321 11334599999999765 45666666666778999999987753 4778888888632


Q ss_pred             CCCCCCCCCc--ccEEEEEEcccccCCCEEeeeEeeeecCCCCCceeeEEEEEEEEeeccchhhhhccCCCCCC
Q 045058          672 GEKSNGNKDL--KIGKVRIRISTLETGRIYTHSYPLLVLHPTGVKKMGELHLAIRFSCTSFANMLYLYSRPLLP  743 (1005)
Q Consensus       672 ~~~~~~~~d~--~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~G~i~l~~~~~~~~~~~~~~~~~~~~~p  743 (1005)
                      .      .++  .+|  .|.+..+.+... .+-+.|.      ...+|++.+++.+     .++.+.|-+..+|
T Consensus       126 ~------RHKLC~~g--~l~~~~v~rqsp-d~~~Al~------lePrgq~~~r~~~-----~Dp~av~rR~~~P  179 (442)
T KOG1452|consen  126 R------RHKLCHLG--LLEAFVVDRQSP-DRVVALY------LEPRGQPPLRLPL-----ADPEAVTRRTVNP  179 (442)
T ss_pred             h------hccccccc--hhhhhhhhhcCC-cceeeee------cccCCCCceeccc-----CChHHHhhcccCc
Confidence            2      222  245  333333332221 2334443      2335888888876     3455555555555

>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks)

Probab=92.63  E-value=0.45  Score=47.20  Aligned_cols=112  Identities=20%  Similarity=0.168  Sum_probs=72.1

Q ss_pred             CcEEEEEEEEeecCCCCCCCCCCCcEEEEEE--CCeE----eeccccC----CCCCCceeeEEEEEeccCccccceEEEE
Q 045058            3 NLKLGVQVVGAHNLLPKDGKGSSSAFVELYF--DGQR----FRTTIKE----NDLNPVWNESFYFNISDASKLHYLTLEA   72 (1005)
Q Consensus         3 ~~~l~V~v~~a~~L~~~d~~g~~dpyv~v~~--~~~~----~~T~v~~----~t~nP~Wne~f~f~v~~~~~~~~~~l~v   72 (1005)
                      ...+.|+|.++.+++........|-||.+.+  +++.    ..|+...    -...+.|||...|++.-.+-.....|.|
T Consensus         7 ~~~~~i~v~~~h~~~~~~~~~~~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~i~i~~LPrearL~i   86 (171)
T cd04012           7 TDLLSVTVSSLHRIPPTWVQSFEDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFPIPVCQLPRESRLVL   86 (171)
T ss_pred             cccEEEEEEEeecCChHHhhccccEEEEEEEEECCEECcCceeccccccccCccccccccceEECccchhcCChhHEEEE
Confidence            3578899999999987665556788888764  5542    3444221    1235789999999975433344578999


Q ss_pred             EEEeCCCCCC--------CCcccEEEEEeCCcccCCCCceeeeEecccCCCcceeeeEEEEEEEEec
Q 045058           73 YIYNNIGDTN--------SRSFLGKVCLTGNSFVPLSDSVVLHYPLEKRGIFSHVRGELGLKVYITD  131 (1005)
Q Consensus        73 ~V~d~~~~~~--------~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~~~  131 (1005)
                      .+|+......        .+..||.+.++|-+..  +       .        -.+|...+.++...
T Consensus        87 tl~~~~~~~~~~~~~~~~~~~~lG~~~~~LFd~~--~-------~--------L~~G~~~L~lW~~~  136 (171)
T cd04012          87 TLYGTTSSPDGGSNKQRMGPEELGWVSLPLFDFR--G-------V--------LRQGSLLLGLWPPS  136 (171)
T ss_pred             EEEEEecCCccccccccccceEEEEEeEeeEcch--h-------h--------hccCCEEEEeccCC
Confidence            9998633211        3467887777744310  0       0        23688888887433

There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c

>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks)

Probab=92.03  E-value=0.57  Score=45.69  Aligned_cols=70  Identities=26%  Similarity=0.317  Sum_probs=51.8

Q ss_pred             CCCcEEEEEE--CCeEE----eeecccCCCCCcccccEEEEEeeC---CCCCeEEEEEEeccCCCCCceeEEEEEccccc
Q 045058          454 FPDVYVKAQI--GNQVL----KTKICQARTLSAVWNEDLLFVAAE---PFEDHLVLTVEDRVGPGKDEIIGRVIIPLSAI  524 (1005)
Q Consensus       454 ~~dpyv~v~l--g~~~~----kT~~~~~~t~~P~w~e~f~f~v~~---~~~~~l~i~V~d~d~~~~d~~iG~~~i~l~~l  524 (1005)
                      .++-||++.+  |++..    .|+... -+..+.|||.+.|++.-   |.+..|.|+|||.+..++...+|.+.++|-+.
T Consensus        29 ~~~l~V~~~l~~~~~~L~~pv~T~~~~-f~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~~~~~~~vg~~~~~lFd~  107 (159)
T cd08397          29 NSDLFVTCQVFDDGKPLTLPVQTSYKP-FKNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSGTGKAVPFGGTTLSLFNK  107 (159)
T ss_pred             CCCEEEEEEEEECCEeccCcEEccccC-CCCCcccceeEEcccchhcCChhheEEEEEEEecCCCCceEEEEEEEeeECC
Confidence            4677888876  55432    454443 45678899999998743   46779999999987665678999999998654

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty

>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks)

Probab=91.35  E-value=0.83  Score=45.35  Aligned_cols=90  Identities=29%  Similarity=0.417  Sum_probs=64.4

Q ss_pred             EEEEEEEEeeeCCCCCCCCCCCcEEEEEE--CCeEE----eeeccc---CCCCCcccccEEEEEee---CCCCCeEEEEE
Q 045058          435 YVRVNVVEAQDLVPTEKNHFPDVYVKAQI--GNQVL----KTKICQ---ARTLSAVWNEDLLFVAA---EPFEDHLVLTV  502 (1005)
Q Consensus       435 ~L~V~v~~a~~L~~~d~~~~~dpyv~v~l--g~~~~----kT~~~~---~~t~~P~w~e~f~f~v~---~~~~~~l~i~V  502 (1005)
                      .++|+|..+.+++........+-||++.+  |++..    .|+...   .-...+.|||.+.|++.   .|.+..|.|++
T Consensus         9 ~~~i~v~~~h~~~~~~~~~~~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~i~i~~LPrearL~itl   88 (171)
T cd04012           9 LLSVTVSSLHRIPPTWVQSFEDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFPIPVCQLPRESRLVLTL   88 (171)
T ss_pred             cEEEEEEEeecCChHHhhccccEEEEEEEEECCEECcCceeccccccccCccccccccceEECccchhcCChhHEEEEEE
Confidence            68899999999988765556788988877  66533    333221   11235779999999763   34677999999


Q ss_pred             EeccCCC---------CCceeEEEEEccccc
Q 045058          503 EDRVGPG---------KDEIIGRVIIPLSAI  524 (1005)
Q Consensus       503 ~d~d~~~---------~d~~iG~~~i~l~~l  524 (1005)
                      |+....+         .+..||.+.++|-+.
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~lG~~~~~LFd~  119 (171)
T cd04012          89 YGTTSSPDGGSNKQRMGPEELGWVSLPLFDF  119 (171)
T ss_pred             EEEecCCccccccccccceEEEEEeEeeEcc
Confidence            9976543         457899999988664

There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c

>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks)

Probab=90.13  E-value=1.8  Score=42.94  Aligned_cols=70  Identities=29%  Similarity=0.285  Sum_probs=45.7

Q ss_pred             EEEEEEEEeeeCCCCCCCCCCCcEEEEEE--CCeEE---eeecccCCCCCcccccEEEEEeeC---CCCCeEEEEEEecc
Q 045058          435 YVRVNVVEAQDLVPTEKNHFPDVYVKAQI--GNQVL---KTKICQARTLSAVWNEDLLFVAAE---PFEDHLVLTVEDRV  506 (1005)
Q Consensus       435 ~L~V~v~~a~~L~~~d~~~~~dpyv~v~l--g~~~~---kT~~~~~~t~~P~w~e~f~f~v~~---~~~~~l~i~V~d~d  506 (1005)
                      .++|+|.++. .+..+......-||++.+  |++..   +|.... -+.++.|||-+.|++.-   |....|.|+||+..
T Consensus        11 ~friki~~~~-~~~~~~~~~~~l~V~~~Ly~g~~~l~~~~T~~~~-~~~~~~WnEwL~f~I~~~dLP~~arLc~ti~~~~   88 (178)
T cd08399          11 KFRVKILGID-IPVLPRNTDLTVFVEANIQHGQQVLCQRRTSPKP-FTEEVLWNTWLEFDIKIKDLPKGALLNLQIYCGK   88 (178)
T ss_pred             CEEEEEEeec-ccCcCCCCceEEEEEEEEEECCeecccceeeccC-CCCCccccccEECccccccCChhhEEEEEEEEEe
Confidence            4677888776 333333333456777655  55432   455443 45679999999998743   36679999999963

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir

>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins

Probab=89.99  E-value=4.9  Score=40.10  Aligned_cols=40  Identities=20%  Similarity=0.297  Sum_probs=33.4

Q ss_pred             EeeccccCCCCCCceeeEEEEEeccCccccceEEEEEEEeC
Q 045058           37 RFRTTIKENDLNPVWNESFYFNISDASKLHYLTLEAYIYNN   77 (1005)
Q Consensus        37 ~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~   77 (1005)
                      .++|.|...+.+|.|||++.+.++-. ......|.|++++.
T Consensus        54 e~~S~V~yH~~~P~W~EtiKi~lP~~-~~~~~HL~FtfrH~   93 (189)
T cd08695          54 EYRSFVLYHNNSPRWNETIKLPIPID-KFRGSHLRFEFRHC   93 (189)
T ss_pred             eEEEEEEEcCCCCCCceeEEEecChh-hCCCeeEEEEEEEe
Confidence            57888999999999999999998653 35667899988885

Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int

>smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain

Probab=89.09  E-value=2.1  Score=38.12  Aligned_cols=73  Identities=22%  Similarity=0.225  Sum_probs=50.3

Q ss_pred             EEEEEEEEeecCCCCCCCCCCCcEEEEEE--CCe----EeeccccCCCCCCceeeEEEEEeccCccccceEEEEEEEeC
Q 045058            5 KLGVQVVGAHNLLPKDGKGSSSAFVELYF--DGQ----RFRTTIKENDLNPVWNESFYFNISDASKLHYLTLEAYIYNN   77 (1005)
Q Consensus         5 ~l~V~v~~a~~L~~~d~~g~~dpyv~v~~--~~~----~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~   77 (1005)
                      .+.+.+...++.........++-||.+.+  +++    ...|+.+.-...+.|||...|++.-.+-.....|.|.+|+.
T Consensus        12 ~~~~~~~~~~~~~l~~~~~~~~l~v~~~l~~g~~~l~~pv~t~~~~~~~~~~Wnewl~f~i~i~~LPr~a~L~~~i~~~   90 (100)
T smart00142       12 NLVITIALIHGIPLNWSRDYSDLYVEIQLYHGGKLLCLPVSTSYKPFFPSVKWNEWLTFPIQISDLPREARLCITIYEV   90 (100)
T ss_pred             ceEEEEEEeeCCCcccccCcceEEEEEEEEECCEEccCcEEecccCCCCCcccceeEEccCchhcCChhhEEEEEEEEe
Confidence            36677888887765543333578888864  554    23566555556689999999987544444567899999986

Outlier of C2 family.

>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins

Probab=86.99  E-value=3.1  Score=41.59  Aligned_cols=40  Identities=18%  Similarity=0.254  Sum_probs=33.5

Q ss_pred             EeeccccCCCCCCceeeEEEEEeccCccccceEEEEEEEeC
Q 045058           37 RFRTTIKENDLNPVWNESFYFNISDASKLHYLTLEAYIYNN   77 (1005)
Q Consensus        37 ~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~   77 (1005)
                      .++|.|.....+|.|||++.+.++-. ......|.|++++.
T Consensus        54 e~~S~V~Yh~~~P~W~EtIKl~lP~~-~~~~~HL~FtfrH~   93 (196)
T cd08694          54 EYKSVIYYQVDKPKWFETFKVAIPIE-DFKSSHLRFTFKHR   93 (196)
T ss_pred             eEEEEEEeecCCCCCceeEEEecChh-hCCCeEEEEEEEee
Confidence            57888989999999999999998653 35667899999885

Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2

Probab=85.57  E-value=3.1  Score=39.89  Aligned_cols=75  Identities=19%  Similarity=0.174  Sum_probs=47.7

Q ss_pred             eccccCCC-CCCceeeEEEEEeccCccccceEEEEEEEeCCCCCCCC----cccEEEEEeCCcccCCCCceeeeEecccC
Q 045058           39 RTTIKEND-LNPVWNESFYFNISDASKLHYLTLEAYIYNNIGDTNSR----SFLGKVCLTGNSFVPLSDSVVLHYPLEKR  113 (1005)
Q Consensus        39 ~T~v~~~t-~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~~~~~d----~~lG~~~i~l~~l~~~~~~~~~w~~L~~~  113 (1005)
                      .|+...-+ .++.|||.+.|++.=.+-.....|.|.||+.+... .+    ..||.+.++|-+.  .+.           
T Consensus        23 ~T~~~~~~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~~~-~~~~~~~~lgw~n~~lFd~--~~~-----------   88 (142)
T PF00792_consen   23 STSYVPFSFSRPKWDEWLTFPIPISDLPREARLCFTLYGVDSKK-KSKKKKVPLGWVNLPLFDY--RGQ-----------   88 (142)
T ss_dssp             E-S-EESS-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEECST-TT--EEEEEEEEEEESB-T--TSB-----------
T ss_pred             eccccccccccceEeeEEEeecChHHCChhHeEEEEEEEecCCC-ccccceeEEEEEEEEeECC--CCc-----------
Confidence            56655555 79999999999975444345678999999874332 33    6899988885442  111           


Q ss_pred             CCcceeeeEEEEEEEEec
Q 045058          114 GIFSHVRGELGLKVYITD  131 (1005)
Q Consensus       114 ~~~~~~~G~i~l~~~~~~  131 (1005)
                          -.+|...+.++-..
T Consensus        89 ----L~~G~~~L~lW~~~  102 (142)
T PF00792_consen   89 ----LRQGPQKLSLWPDE  102 (142)
T ss_dssp             ----BEEEEEEEE-EET-
T ss_pred             ----ccCCCEEEEEEcCC
Confidence                23699999995433

7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....

>smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain

Probab=84.50  E-value=5.3  Score=35.56  Aligned_cols=70  Identities=24%  Similarity=0.348  Sum_probs=46.5

Q ss_pred             EEEEEEEeeeCCCCCCCCCCCcEEEEEE--CCeEE----eeecccCCCCCcccccEEEEEee---CCCCCeEEEEEEecc
Q 045058          436 VRVNVVEAQDLVPTEKNHFPDVYVKAQI--GNQVL----KTKICQARTLSAVWNEDLLFVAA---EPFEDHLVLTVEDRV  506 (1005)
Q Consensus       436 L~V~v~~a~~L~~~d~~~~~dpyv~v~l--g~~~~----kT~~~~~~t~~P~w~e~f~f~v~---~~~~~~l~i~V~d~d  506 (1005)
                      +.+.+..+.+.........++-||++.+  |++..    .|+.+. -...+.|||.+.|++.   .|.+..|.|++|+..
T Consensus        13 ~~~~~~~~~~~~l~~~~~~~~l~v~~~l~~g~~~l~~pv~t~~~~-~~~~~~Wnewl~f~i~i~~LPr~a~L~~~i~~~~   91 (100)
T smart00142       13 LVITIALIHGIPLNWSRDYSDLYVEIQLYHGGKLLCLPVSTSYKP-FFPSVKWNEWLTFPIQISDLPREARLCITIYEVK   91 (100)
T ss_pred             eEEEEEEeeCCCcccccCcceEEEEEEEEECCEEccCcEEecccC-CCCCcccceeEEccCchhcCChhhEEEEEEEEee
Confidence            4566666666655443333588888877  65433    444442 4556899999999764   346779999999864

Outlier of C2 family.

>cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins

Probab=83.09  E-value=15  Score=31.57  Aligned_cols=63  Identities=19%  Similarity=0.356  Sum_probs=45.0

Q ss_pred             CCcEEEEEECCe-eeeeeeecCCCCCeeeeEEEEeecCCCCcEEEEEEEeCCCCCCceeEEEEEEceec
Q 045058          291 IDPFVEVKIGNY-KGITKHYEKNQNPQWHQVFAFSRDRMQASVLEVVIKDKDLVKDDFVGIVRFDINEV  358 (1005)
Q Consensus       291 ~dPyv~v~~~~~-~~kT~~~~~~~nP~wne~f~f~~~~~~~~~l~v~V~d~~~~~d~~lG~~~i~l~~l  358 (1005)
                      ++-.+.+++.+. ..+|.- +.-.+..|++.|.+.++.  +..|+|.||-+|.  ..+-|...+.|.+.
T Consensus         9 ~eV~avLklDn~~VgqT~W-k~~s~q~WDQ~Fti~LdR--sRELEI~VywrD~--RslCav~~lrLEd~   72 (98)
T cd08687           9 SEVSAVLKLDNTVVGQTQW-KPKSNQAWDQSFTLELER--SRELEIAVYWRDW--RSLCAVKFLKLEDE   72 (98)
T ss_pred             cceEEEEEEcCeEEeeccc-cccccccccceeEEEeec--ccEEEEEEEEecc--hhhhhheeeEhhhh
Confidence            567888898884 456653 334688999999998876  4579999988763  23455566677764

PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct

>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A

Probab=82.43  E-value=4  Score=41.05  Aligned_cols=58  Identities=12%  Similarity=0.149  Sum_probs=32.3

Q ss_pred             EeeccccCCCCCCceeeEEEEEeccCccccceEEEEEEEeCCCCCCCC--cccEEEEEeCC
Q 045058           37 RFRTTIKENDLNPVWNESFYFNISDASKLHYLTLEAYIYNNIGDTNSR--SFLGKVCLTGN   95 (1005)
Q Consensus        37 ~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~~~~~d--~~lG~~~i~l~   95 (1005)
                      .+.|.+..++.+|.|+|+|.+.++... .....|.|++++.....+++  ..+|-+.++|-
T Consensus        60 ~~~S~v~yh~k~P~f~deiKi~LP~~l-~~~~HLlFtf~h~s~~~~~~~~~~~g~a~lpL~  119 (184)
T PF14429_consen   60 SYYSSVYYHNKNPQFNDEIKIQLPPDL-FPKHHLLFTFYHVSCKESKEKSKPFGYAFLPLM  119 (184)
T ss_dssp             -EE----TT-SS-EEEEEEEEEE-CCC-CTTEEEEEEEEE---SSSS-SS-EEEEEEEESB
T ss_pred             EEEEEEEecCCCCCccEEEEEEcCchh-cccEEEEEEEEeeccccccCccceeEEEEEEee
Confidence            367778889999999999999996432 45578999999863222122  56676655543

>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2

Probab=81.93  E-value=11  Score=35.95  Aligned_cols=54  Identities=20%  Similarity=0.306  Sum_probs=38.5

Q ss_pred             EeeeccCC-CCceeccEEEEEEe--C-C-CceEEEEEEeCCCcCCCCCCCCC----cccEEEEEEcccc
Q 045058          634 RTRTLVDN-LSPKYNEQYTWEVF--D-P-ATVLTVGVFDNSQLGEKSNGNKD----LKIGKVRIRISTL  693 (1005)
Q Consensus       634 ~T~~~~~t-~nP~wne~f~~~v~--~-~-~~~l~i~v~d~~~~~~~~~~~~d----~~lG~~~i~l~~l  693 (1005)
                      .|+.+.-+ .++.|||.++|++.  + | .+.|.|+||+.+...      ..    ..||.+.++|=+-
T Consensus        23 ~T~~~~~~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~~~------~~~~~~~~lgw~n~~lFd~   85 (142)
T PF00792_consen   23 STSYVPFSFSRPKWDEWLTFPIPISDLPREARLCFTLYGVDSKK------KSKKKKVPLGWVNLPLFDY   85 (142)
T ss_dssp             E-S-EESS-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEECST------TT--EEEEEEEEEEESB-T
T ss_pred             eccccccccccceEeeEEEeecChHHCChhHeEEEEEEEecCCC------ccccceeEEEEEEEEeECC
Confidence            55555555 79999999999875  4 3 679999999876432      22    6899999998664

7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....

>PF11618 DUF3250: Protein of unknown function (DUF3250); InterPro: IPR021656 This family of proteins represents a protein with unknown function

Probab=80.59  E-value=5.3  Score=35.98  Aligned_cols=98  Identities=12%  Similarity=0.053  Sum_probs=54.0

Q ss_pred             EEEEEECCe-EeeccccCCCCCCceeeEEEEEeccCcc----ccceEEEEEEEeCCCCCCCCcccEEEEEeCCcccCCCC
Q 045058           28 FVELYFDGQ-RFRTTIKENDLNPVWNESFYFNISDASK----LHYLTLEAYIYNNIGDTNSRSFLGKVCLTGNSFVPLSD  102 (1005)
Q Consensus        28 yv~v~~~~~-~~~T~v~~~t~nP~Wne~f~f~v~~~~~----~~~~~l~v~V~d~~~~~~~d~~lG~~~i~l~~l~~~~~  102 (1005)
                      ||.+.+-.. .+.|.++. +.+|.+|-+-.|.|...+.    ++...+.++++..  .+...+.||.+.|++..+.....
T Consensus         2 Fct~dFydfEtq~Tpvv~-G~~p~y~fts~y~V~~d~~fl~YLq~~~~~lELhqa--~g~d~~tla~~~i~l~~ll~~~~   78 (107)
T PF11618_consen    2 FCTYDFYDFETQTTPVVR-GLNPFYDFTSQYKVTMDDLFLHYLQTGSLTLELHQA--LGSDFETLAAGQISLRPLLESNG   78 (107)
T ss_dssp             EEEE-STT---EE---EE-SSS----EEEEEEE--SHHHHHHHHH--EEEEEEEE---SS-EEEEEEEEE--SHHHH--S
T ss_pred             EEEEEeeceeeeccccee-CCCccceeEEEEEEEcCHHHHHHhhcCCEEEEEEee--ccCCeEEEEEEEeechhhhcCCC
Confidence            677776554 56777775 8999999998888854332    4667899999885  24457899999999999864433


Q ss_pred             -ceeeeEecccCCCcceeeeEEEEEEEEe
Q 045058          103 -SVVLHYPLEKRGIFSHVRGELGLKVYIT  130 (1005)
Q Consensus       103 -~~~~w~~L~~~~~~~~~~G~i~l~~~~~  130 (1005)
                       .......|.+.++  ..-|.+...+.+.
T Consensus        79 ~~i~~~~~l~g~~~--~~~g~l~y~~rl~  105 (107)
T PF11618_consen   79 ERIHGSATLVGVSG--EDFGTLEYWIRLR  105 (107)
T ss_dssp             --EEEEEEE-BSSS---TSEEEEEEEEEE
T ss_pred             ceEEEEEEEeccCC--CeEEEEEEEEEec
Confidence             3334466765544  3678888877654

It may be the C2 domain from KIAA1005 however this cannot be confirmed. ; PDB: 2YRB_A.

>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins

Probab=80.53  E-value=15  Score=36.77  Aligned_cols=54  Identities=17%  Similarity=0.318  Sum_probs=39.3

Q ss_pred             eeeeeeecCCCCCeeeeEEEEee--cCCCCcEEEEEEEeCCC--CCC---ceeEEEEEEce
Q 045058          303 KGITKHYEKNQNPQWHQVFAFSR--DRMQASVLEVVIKDKDL--VKD---DFVGIVRFDIN  356 (1005)
Q Consensus       303 ~~kT~~~~~~~nP~wne~f~f~~--~~~~~~~l~v~V~d~~~--~~d---~~lG~~~i~l~  356 (1005)
                      .++|.+...+.+|.|+|++.+.+  +......|.|++++...  .+|   ..+|.+-++|-
T Consensus        54 e~~S~V~Yh~~~P~W~EtIKl~lP~~~~~~~HL~FtfrH~S~~~~kd~~e~pfg~s~lpL~  114 (196)
T cd08694          54 EYKSVIYYQVDKPKWFETFKVAIPIEDFKSSHLRFTFKHRSSNEAKDKSEKPFALSFVKLM  114 (196)
T ss_pred             eEEEEEEeecCCCCCceeEEEecChhhCCCeEEEEEEEeeccccccCCCCCceEEEEEeee
Confidence            57888889999999999998875  44566789999988641  222   45666666653

Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A

Probab=80.37  E-value=6.6  Score=39.52  Aligned_cols=58  Identities=14%  Similarity=0.176  Sum_probs=34.9

Q ss_pred             EEEeeeccCCCCceeccEEEEEEeC---CCceEEEEEEeCCCcCCCCCCCCCcccEEEEEEccc
Q 045058          632 WVRTRTLVDNLSPKYNEQYTWEVFD---PATVLTVGVFDNSQLGEKSNGNKDLKIGKVRIRIST  692 (1005)
Q Consensus       632 ~~~T~~~~~t~nP~wne~f~~~v~~---~~~~l~i~v~d~~~~~~~~~~~~d~~lG~~~i~l~~  692 (1005)
                      .+.|.+.+++.+|.|+|+|.+.++.   +...|.+++++-..-.   ...++..+|.+.+||.+
T Consensus        60 ~~~S~v~yh~k~P~f~deiKi~LP~~l~~~~HLlFtf~h~s~~~---~~~~~~~~g~a~lpL~~  120 (184)
T PF14429_consen   60 SYYSSVYYHNKNPQFNDEIKIQLPPDLFPKHHLLFTFYHVSCKE---SKEKSKPFGYAFLPLMD  120 (184)
T ss_dssp             -EE----TT-SS-EEEEEEEEEE-CCCCTTEEEEEEEEE---SS---SS-SS-EEEEEEEESB-
T ss_pred             EEEEEEEecCCCCCccEEEEEEcCchhcccEEEEEEEEeecccc---ccCccceeEEEEEEeee
Confidence            4688888899999999999999975   3568999999876422   11122789999999977

>KOG1329 consensus Phospholipase D1 [Lipid transport and metabolism]

Probab=80.33  E-value=1.8  Score=52.24  Aligned_cols=104  Identities=15%  Similarity=0.152  Sum_probs=81.2

Q ss_pred             CCCCcEEEEEECCEE-EEeeeccCC-CCceeccEEEEEEeCCCceEEEEEEeCCCcCCCCCCCCCcccEEEEEEcccccC
Q 045058          618 GTSDTYCVAKYGHKW-VRTRTLVDN-LSPKYNEQYTWEVFDPATVLTVGVFDNSQLGEKSNGNKDLKIGKVRIRISTLET  695 (1005)
Q Consensus       618 ~~~dpyv~~~~g~~~-~~T~~~~~t-~nP~wne~f~~~v~~~~~~l~i~v~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~  695 (1005)
                      ...++|+.+.+.... .+|..+.+. .+|.|.+.|+.........+++.+-+.+..+      -...+|.+.++...+..
T Consensus       136 ~~~e~Ylt~~l~~~~~~~t~~~~~f~e~s~~~f~~~~~~~h~~g~v~~~~~~~~~~G------~s~~w~~v~~s~~~~~~  209 (887)
T KOG1329|consen  136 KTLENYLTVVLHKARYRRTHVIYEFLENSRWSFSFDIGFAHKAGYVIFRVKGARVPG------WSKRWGRVKISFLQYCS  209 (887)
T ss_pred             hhccchheeeechhhhhchhhhhcccccchhhhhccccccccccEEEEeecCCcccc------ceeEEEEeccchhhhhc
Confidence            346899999997765 488888888 7999999998888888889999999887654      57899999999999999


Q ss_pred             CCEEeeeEeeeecCCCCCceeeEEEEEEEEee
Q 045058          696 GRIYTHSYPLLVLHPTGVKKMGELHLAIRFSC  727 (1005)
Q Consensus       696 ~~~~~~~~~L~~~~~~~~~~~G~i~l~~~~~~  727 (1005)
                      +.....|+++.....+...+.-.+.+.+.|.+
T Consensus       210 ~~~~~~~~~Il~~d~~~~~~~~~~~~~~~~~~  241 (887)
T KOG1329|consen  210 GHRIGGWFPILDNDGKPHQKGSNESLRLGFTP  241 (887)
T ss_pred             cccccceeeeeccCCccccCCcccceEEeeEe
Confidence            88888999987655543333234455555544

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	1005
2ep6_A	133	Solution Structure Of The Second C2 Domain From Hum		3e-06
3kwt_A	148	Munc13-1 C2b-Domain, Calcium-Free Length = 148		3e-06
3kwt_A	148	Munc13-1 C2b-Domain, Calcium-Free Length = 148		1e-05
2d8k_A	141	Solution Structure Of The First C2 Domain Of Synapt		1e-05
3jzy_A	510	Crystal Structure Of Human Intersectin 2 C2 Domain		4e-05
3gpe_A	137	Crystal Structure Analysis Of Pkc (Alpha)-C2 Domain		9e-05
1dsy_A	139	C2 Domain From Protein Kinase C (Alpha) Complexed W		1e-04
3hn8_A	296	Crystal Structure Of Synaptotagmin Length = 296		1e-04
1dqv_A	296	Crystal Structure Of Synaptotagmin Iii C2aC2B Lengt		1e-04
4dnl_A	140	Crystal Structure Of A C2 Domain Of A Protein Kinas		3e-04
1rh8_A	142	Three-Dimensional Structure Of The Calcium-Free Pic		3e-04
2uzp_A	144	Crystal Structure Of The C2 Domain Of Human Protein		6e-04

>pdb|2EP6|A Chain A, Solution Structure Of The Second C2 Domain From Human Mctp2 Protein Length = 133

Iteration: 1
 Score = 51.2 bits (121), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 33/103 (32%), Positives = 57/103 (55%), Gaps = 9/103 (8%)
Query: 595 IGILELGILNAVGLHPMKTRDGRGTSDTYCVAKYGHKWVRTRTLVDNLSPKYNEQYTWEV 654
           +GIL++ +L A  L      D  G SD +C+ + G+  ++T T+  NL+P++N+ +T+ +
Sbjct: 12  VGILQVKVLKAADL---LAADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFPI 68
Query: 655 FDPATVLTVGVFDNSQLGEKSNGNKDLKIGKVRIRISTLETGR 697
            D   VL V VFD     E  +   D  +GKV I + ++  G+
Sbjct: 69  KDIHDVLEVTVFD-----EDGDKPPDF-LGKVAIPLLSIRDGQ 105

>pdb|3KWT|A Chain A, Munc13-1 C2b-Domain, Calcium-Free Length = 148

Iteration: 1
 Score = 51.2 bits (121), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 41/131 (31%), Positives = 62/131 (47%), Gaps = 9/131 (6%)
Query: 5   KLGVQVVGAHNLLPKDGKGSSSAFVELYFDGQRFRTTIKENDLNPVWNESFYF---NISD 61
           K+ + VV A  L  KD  GSS  +V +     + RT     +LNPVW E+F+F   N SD
Sbjct: 18  KISITVVCAQGLQAKDKTGSSDPYVTVQVGKTKKRTKTIYGNLNPVWEENFHFECHNSSD 77
Query: 62  ASKLHYLTLEAYIYNNIGDTNSRS---FLGKVCLTGNSFVPLSDSVVLHYPLEKRGIFSH 118
             K+  L  +  I + +     R    FLG+  +   +   LS  + + Y L+KR   S 
Sbjct: 78  RIKVRVLDEDDDIKSRVKQRFKRESDDFLGQTIIEVRT---LSGEMDVWYNLDKRTDKSA 134
Query: 119 VRGELGLKVYI 129
           V G + L + +
Sbjct: 135 VSGAIRLHISV 145

>pdb|3KWT|A Chain A, Munc13-1 C2b-Domain, Calcium-Free Length = 148

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 28/65 (43%), Positives = 37/65 (56%), Gaps = 4/65 (6%)
Query: 274 VRVVKARELPAMDLTGSIDPFVEVKIGNYKGITKHYEKNQNPQWHQVFAF----SRDRMQ 329
           + VV A+ L A D TGS DP+V V++G  K  TK    N NP W + F F    S DR++
Sbjct: 21  ITVVCAQGLQAKDKTGSSDPYVTVQVGKTKKRTKTIYGNLNPVWEENFHFECHNSSDRIK 80
Query: 330 ASVLE 334
             VL+
Sbjct: 81  VRVLD 85

>pdb|2D8K|A Chain A, Solution Structure Of The First C2 Domain Of Synaptotagmin Vii Length = 141

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 36/55 (65%), Gaps = 3/55 (5%)
Query: 272 LYVRVVKARELPAMDLTGSIDPFVEVKI---GNYKGITKHYEKNQNPQWHQVFAF 323
           L V+++KA+ELPA D +G+ DPFV++ +     +K  TK   KN NP W++ F F
Sbjct: 28  LTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLF 82

>pdb|3JZY|A Chain A, Crystal Structure Of Human Intersectin 2 C2 Domain Length = 510

Iteration: 1
 Score = 47.4 bits (111), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 28/94 (29%), Positives = 49/94 (52%), Gaps = 1/94 (1%)
Query: 438 VNVVEAQDLVPTEKNHFPDVYVKAQIGNQVLKTKICQARTLSAVWNEDLLFVAAEPFEDH 497
           V+V+EA +L   + N   + Y +  +G+Q   T+  Q  TL+  WN +  F   + ++D 
Sbjct: 391 VHVIEATELKACKPNGKSNPYCEISMGSQSYTTRTIQD-TLNPKWNFNCQFFIKDLYQDV 449
Query: 498 LVLTVEDRVGPGKDEIIGRVIIPLSAIEKRADER 531
           L LT+ DR     D+ +GR  IP++ I    + +
Sbjct: 450 LCLTLFDRDQFSPDDFLGRTEIPVAKIRTEQESK 483

>pdb|3GPE|A Chain A, Crystal Structure Analysis Of Pkc (Alpha)-C2 Domain Complexed With Ca2+ And Ptdins(4,5)p2 Length = 137

Iteration: 1
 Score = 46.2 bits (108), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 29/93 (31%), Positives = 45/93 (48%), Gaps = 8/93 (8%)
Query: 5   KLGVQVVGAHNLLPKDGKGSSSAFVELYF-----DGQRFRTTIKENDLNPVWNESFYFNI 59
           KL V V  A NL+P D  G S  +V+L       +  + +T    + LNP WNESF F +
Sbjct: 17  KLHVTVRDAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTFKL 76
Query: 60  SDASKLHYLTLEAYIYNNIGDTNSRSFLGKVCL 92
             + K   L++E + ++    T    F+G +  
Sbjct: 77  KPSDKDRRLSVEIWDWDR---TTRNDFMGSLSF 106

>pdb|1DSY|A Chain A, C2 Domain From Protein Kinase C (Alpha) Complexed With Ca2+ And Phosphatidylserine Length = 139

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/93 (31%), Positives = 45/93 (48%), Gaps = 8/93 (8%)
Query: 5   KLGVQVVGAHNLLPKDGKGSSSAFVELYF-----DGQRFRTTIKENDLNPVWNESFYFNI 59
           KL V V  A NL+P D  G S  +V+L       +  + +T    + LNP WNESF F +
Sbjct: 18  KLHVTVRDAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTFKL 77
Query: 60  SDASKLHYLTLEAYIYNNIGDTNSRSFLGKVCL 92
             + K   L++E + ++    T    F+G +  
Sbjct: 78  KPSDKDRRLSVEIWDWDR---TTRNDFMGSLSF 107

>pdb|3HN8|A Chain A, Crystal Structure Of Synaptotagmin Length = 296

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 66/257 (25%), Positives = 102/257 (39%), Gaps = 52/257 (20%)
Query: 272 LYVRVVKARELPAMDLTGSIDPFVEVKI---GNYKGITKHYEKNQNPQWHQVFAFS---R 325
           L VR+++A +LPA D  G  DP+V++ +      K  TK + K  NP +++ F FS    
Sbjct: 23  LVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPLA 82
Query: 326 DRMQASVLEXXXXXXXXXXXXXXGIVRFDINEVPLRVPPDSPLAPEWYRLEDKKGEKIK- 384
           +  Q  +                G V  D        PPD PL   W  + +   EK   
Sbjct: 83  ELAQRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQPPDRPL---WRDILEGGSEKADL 139
Query: 385 GELMLAVWIGTQADEAFSDAWHSDAATPVDSTPAITAVIRSKVYHSPRLWYVRVNVVEAQ 444
           GEL  ++                                     + P    + V +++A 
Sbjct: 140 GELNFSLC------------------------------------YLPTAGLLTVTIIKAS 163
Query: 445 DLVPTEKNHFPDVYVKAQI---GNQVLKTKIC-QARTLSAVWNEDLLF-VAAEPFED-HL 498
           +L   +   F D YVKA +   G ++ K K   +  TL+  +NE L+F VA E  E+  L
Sbjct: 164 NLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVAPESVENVGL 223
Query: 499 VLTVEDRVGPGKDEIIG 515
            + V D    G +E+IG
Sbjct: 224 SIAVVDYDCIGHNEVIG 240

>pdb|1DQV|A Chain A, Crystal Structure Of Synaptotagmin Iii C2aC2B Length = 296

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 66/257 (25%), Positives = 102/257 (39%), Gaps = 52/257 (20%)
Query: 272 LYVRVVKARELPAMDLTGSIDPFVEVKI---GNYKGITKHYEKNQNPQWHQVFAFS---R 325
           L VR+++A +LPA D  G  DP+V++ +      K  TK + K  NP +++ F FS    
Sbjct: 22  LVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPLA 81
Query: 326 DRMQASVLEXXXXXXXXXXXXXXGIVRFDINEVPLRVPPDSPLAPEWYRLEDKKGEKIK- 384
           +  Q  +                G V  D        PPD PL   W  + +   EK   
Sbjct: 82  ELAQRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQPPDRPL---WRDILEGGSEKADL 138
Query: 385 GELMLAVWIGTQADEAFSDAWHSDAATPVDSTPAITAVIRSKVYHSPRLWYVRVNVVEAQ 444
           GEL  ++                                     + P    + V +++A 
Sbjct: 139 GELNFSLC------------------------------------YLPTAGLLTVTIIKAS 162
Query: 445 DLVPTEKNHFPDVYVKAQI---GNQVLKTKIC-QARTLSAVWNEDLLF-VAAEPFED-HL 498
           +L   +   F D YVKA +   G ++ K K   +  TL+  +NE L+F VA E  E+  L
Sbjct: 163 NLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVAPESVENVGL 222
Query: 499 VLTVEDRVGPGKDEIIG 515
            + V D    G +E+IG
Sbjct: 223 SIAVVDYDCIGHNEVIG 239

>pdb|4DNL|A Chain A, Crystal Structure Of A C2 Domain Of A Protein Kinase C Alpha (Prkca) From Homo Sapiens At 1.90 A Resolution Length = 140

Iteration: 1
 Score = 44.7 bits (104), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 29/93 (31%), Positives = 44/93 (47%), Gaps = 8/93 (8%)
Query: 5   KLGVQVVGAHNLLPKDGKGSSSAFVELYF-----DGQRFRTTIKENDLNPVWNESFYFNI 59
           KL V V  A NL+P D  G S  +V+L       +  + +T    + LNP WNESF F +
Sbjct: 19  KLHVTVRDAKNLIPXDPNGLSDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTFKL 78
Query: 60  SDASKLHYLTLEAYIYNNIGDTNSRSFLGKVCL 92
             + K   L++E + ++    T    F G +  
Sbjct: 79  KPSDKDRRLSVEIWDWDR---TTRNDFXGSLSF 108

>pdb|1RH8|A Chain A, Three-Dimensional Structure Of The Calcium-Free Piccolo C2a- Domain Length = 142

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 37/128 (28%), Positives = 61/128 (47%), Gaps = 19/128 (14%)
Query: 3   NLKLG---VQVVGAHNLLPKDGKGSSSAFVELYF---DGQ-----------RFRTTIKEN 45
           N  LG   + ++ A NL+P+D  G S  FV++Y     GQ           + RT   + 
Sbjct: 14  NYDLGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQK 73
Query: 46  DLNPVWNESFYFNISDASKLHYLTLEAYIYNNIGDTNSRSFLGKVCLTGNSFVPLSDSVV 105
            LNP WN++  +      +L   TLE  ++ +    +S  FLG+V +  +S   L D+  
Sbjct: 74  SLNPEWNQTVIYKSISMEQLMKKTLEVTVW-DYDRFSSNDFLGEVLIDLSSTSHL-DNTP 131
Query: 106 LHYPLEKR 113
             YPL+++
Sbjct: 132 RWYPLKEQ 139

>pdb|2UZP|A Chain A, Crystal Structure Of The C2 Domain Of Human Protein Kinase C Gamma. Length = 144

Iteration: 1
 Score = 43.5 bits (101), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 27/93 (29%), Positives = 46/93 (49%), Gaps = 8/93 (8%)
Query: 5   KLGVQVVGAHNLLPKDGKGSSSAFVELYF-----DGQRFRTTIKENDLNPVWNESFYFNI 59
           ++ V V  A NL+P D  G S  +V+L       +  + +T   +  LNPVWNE+F FN+
Sbjct: 21  EIHVTVGEARNLIPMDPNGLSDPYVKLKLIPDPRNLTKQKTRTVKATLNPVWNETFVFNL 80
Query: 60  SDASKLHYLTLEAYIYNNIGDTNSRSFLGKVCL 92
                   L++E + ++    T+   F+G +  
Sbjct: 81  KPGDVERRLSVEVWDWDR---TSRNDFMGAMSF 110

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	1005
2ep6_A	133	MCTP2 protein; beta sandwich, Ca2+ binding, membra	5e-43
2ep6_A	133	MCTP2 protein; beta sandwich, Ca2+ binding, membra	9e-23
2ep6_A	133	MCTP2 protein; beta sandwich, Ca2+ binding, membra	6e-21
2ep6_A	133	MCTP2 protein; beta sandwich, Ca2+ binding, membra	7e-21
1rlw_A	126	Phospholipase A2, CALB domain; hydrolase, C2 domai	4e-36
1rlw_A	126	Phospholipase A2, CALB domain; hydrolase, C2 domai	1e-15
1rlw_A	126	Phospholipase A2, CALB domain; hydrolase, C2 domai	3e-15
1rlw_A	126	Phospholipase A2, CALB domain; hydrolase, C2 domai	2e-14
2cjt_A	131	UNC-13 homolog A, MUNC13-1; phorbol-ester binding,	4e-35
2cjt_A	131	UNC-13 homolog A, MUNC13-1; phorbol-ester binding,	2e-13
2cjt_A	131	UNC-13 homolog A, MUNC13-1; phorbol-ester binding,	1e-08
2dmh_A	140	Myoferlin; beta-sandwich, FER-1-like protein 3, mu	2e-34
2dmh_A	140	Myoferlin; beta-sandwich, FER-1-like protein 3, mu	2e-18
2dmh_A	140	Myoferlin; beta-sandwich, FER-1-like protein 3, mu	9e-18
2dmh_A	140	Myoferlin; beta-sandwich, FER-1-like protein 3, mu	1e-16
3b7y_A	153	E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-	1e-33
3b7y_A	153	E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-	1e-17
3b7y_A	153	E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-	5e-16
3b7y_A	153	E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-	6e-14
3kwu_A	148	MUNC13-1; calcium binding protein, phospholipid bi	7e-33
3kwu_A	148	MUNC13-1; calcium binding protein, phospholipid bi	4e-32
3kwu_A	148	MUNC13-1; calcium binding protein, phospholipid bi	2e-21
3kwu_A	148	MUNC13-1; calcium binding protein, phospholipid bi	8e-20
2cjs_A	167	UNC-13 homolog A, MUNC13-1; neurotransmitter trans	1e-31
2cjs_A	167	UNC-13 homolog A, MUNC13-1; neurotransmitter trans	3e-11
2cjs_A	167	UNC-13 homolog A, MUNC13-1; neurotransmitter trans	6e-07
1dqv_A	296	Synaptotagmin III; beta sandwich, calcium ION, C2	1e-31
1dqv_A	296	Synaptotagmin III; beta sandwich, calcium ION, C2	4e-19
1dqv_A	296	Synaptotagmin III; beta sandwich, calcium ION, C2	2e-15
1dqv_A	296	Synaptotagmin III; beta sandwich, calcium ION, C2	7e-12
2r83_A	284	Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel	4e-31
2r83_A	284	Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel	2e-20
2r83_A	284	Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel	2e-13
2r83_A	284	Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel	1e-11
3m7f_B	176	E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB1	3e-26
3m7f_B	176	E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB1	8e-18
3m7f_B	176	E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB1	2e-16
3m7f_B	176	E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB1	1e-15
1wfj_A	136	Putative elicitor-responsive gene; C2 domain, rike	4e-25
1wfj_A	136	Putative elicitor-responsive gene; C2 domain, rike	2e-20
1wfj_A	136	Putative elicitor-responsive gene; C2 domain, rike	6e-17
1wfj_A	136	Putative elicitor-responsive gene; C2 domain, rike	1e-16
1cjy_A	749	CPLA2, protein (cytosolic phospholipase A2); lipid	2e-23
1cjy_A	749	CPLA2, protein (cytosolic phospholipase A2); lipid	7e-11
1cjy_A	749	CPLA2, protein (cytosolic phospholipase A2); lipid	1e-09
1cjy_A	749	CPLA2, protein (cytosolic phospholipase A2); lipid	7e-06
2nq3_A	173	Itchy homolog E3 ubiquitin protein ligase; C2 doma	3e-23
2nq3_A	173	Itchy homolog E3 ubiquitin protein ligase; C2 doma	6e-19
2nq3_A	173	Itchy homolog E3 ubiquitin protein ligase; C2 doma	2e-18
2nq3_A	173	Itchy homolog E3 ubiquitin protein ligase; C2 doma	1e-13
3pyc_A	132	E3 ubiquitin-protein ligase smurf1; phospholipid b	5e-23
3pyc_A	132	E3 ubiquitin-protein ligase smurf1; phospholipid b	1e-18
3pyc_A	132	E3 ubiquitin-protein ligase smurf1; phospholipid b	1e-13
3pyc_A	132	E3 ubiquitin-protein ligase smurf1; phospholipid b	1e-10
2fk9_A	157	Protein kinase C, ETA type; ATP-binding, metal-bin	3e-21
2fk9_A	157	Protein kinase C, ETA type; ATP-binding, metal-bin	3e-18
2fk9_A	157	Protein kinase C, ETA type; ATP-binding, metal-bin	8e-16
2fk9_A	157	Protein kinase C, ETA type; ATP-binding, metal-bin	4e-12
1gmi_A	136	Protein kinase C, epsilon type; PKC, C2 domain, X-	9e-21
1gmi_A	136	Protein kinase C, epsilon type; PKC, C2 domain, X-	1e-19
1gmi_A	136	Protein kinase C, epsilon type; PKC, C2 domain, X-	2e-15
1gmi_A	136	Protein kinase C, epsilon type; PKC, C2 domain, X-	5e-12
3rdl_A	137	Protein kinase C alpha type; protein kinase PKC, t	2e-19
3rdl_A	137	Protein kinase C alpha type; protein kinase PKC, t	2e-14
3rdl_A	137	Protein kinase C alpha type; protein kinase PKC, t	4e-14
3rdl_A	137	Protein kinase C alpha type; protein kinase PKC, t	2e-08
1rh8_A	142	Piccolo protein; beta-sandwich, metal binding prot	5e-19
1rh8_A	142	Piccolo protein; beta-sandwich, metal binding prot	3e-14
1rh8_A	142	Piccolo protein; beta-sandwich, metal binding prot	2e-11
1rh8_A	142	Piccolo protein; beta-sandwich, metal binding prot	2e-06
1a25_A	149	CALB, protein kinase C (beta); calcium++/phospholi	6e-19
1a25_A	149	CALB, protein kinase C (beta); calcium++/phospholi	4e-14
1a25_A	149	CALB, protein kinase C (beta); calcium++/phospholi	4e-14
1a25_A	149	CALB, protein kinase C (beta); calcium++/phospholi	4e-09
1v27_A	141	Regulating synaptic membrane exocytosis protein 2;	8e-18
1v27_A	141	Regulating synaptic membrane exocytosis protein 2;	8e-15
1v27_A	141	Regulating synaptic membrane exocytosis protein 2;	2e-13
1v27_A	141	Regulating synaptic membrane exocytosis protein 2;	6e-06
2d8k_A	141	Synaptotagmin VII; exocytosis, calcium binding, ly	9e-18
2d8k_A	141	Synaptotagmin VII; exocytosis, calcium binding, ly	7e-17
2d8k_A	141	Synaptotagmin VII; exocytosis, calcium binding, ly	1e-13
2d8k_A	141	Synaptotagmin VII; exocytosis, calcium binding, ly	2e-08
1rsy_A	152	Synaptotagmin I; calcium/phospholipid binding prot	1e-17
1rsy_A	152	Synaptotagmin I; calcium/phospholipid binding prot	1e-16
1rsy_A	152	Synaptotagmin I; calcium/phospholipid binding prot	2e-12
1rsy_A	152	Synaptotagmin I; calcium/phospholipid binding prot	2e-08
2bwq_A	129	Regulating synaptic membrane exocytosis protein 2;	2e-17
2bwq_A	129	Regulating synaptic membrane exocytosis protein 2;	8e-15
2bwq_A	129	Regulating synaptic membrane exocytosis protein 2;	1e-13
2bwq_A	129	Regulating synaptic membrane exocytosis protein 2;	1e-05
3f04_A	143	Synaptotagmin-1; C2A, calcium, cell junction, cyto	3e-17
3f04_A	143	Synaptotagmin-1; C2A, calcium, cell junction, cyto	2e-16
3f04_A	143	Synaptotagmin-1; C2A, calcium, cell junction, cyto	8e-13
3f04_A	143	Synaptotagmin-1; C2A, calcium, cell junction, cyto	8e-09
2chd_A	142	Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium	5e-17
2chd_A	142	Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium	1e-14
2chd_A	142	Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium	8e-13
2chd_A	142	Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium	9e-08
2z0u_A	155	WW domain-containing protein 1; C2 domain, alterna	3e-16
2z0u_A	155	WW domain-containing protein 1; C2 domain, alterna	4e-15
2z0u_A	155	WW domain-containing protein 1; C2 domain, alterna	1e-11
2z0u_A	155	WW domain-containing protein 1; C2 domain, alterna	4e-06
3fdw_A	148	Synaptotagmin-like protein 4; structural genomics,	2e-15
3fdw_A	148	Synaptotagmin-like protein 4; structural genomics,	2e-13
3fdw_A	148	Synaptotagmin-like protein 4; structural genomics,	6e-09
3fdw_A	148	Synaptotagmin-like protein 4; structural genomics,	5e-06
2b3r_A	134	Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA	3e-15
2b3r_A	134	Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA	1e-13
2b3r_A	134	Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA	6e-09
2b3r_A	134	Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA	1e-05
1ugk_A	138	Synaptotagmin IV, KIAA1342; beta sandwich, structu	7e-15
1ugk_A	138	Synaptotagmin IV, KIAA1342; beta sandwich, structu	3e-14
1ugk_A	138	Synaptotagmin IV, KIAA1342; beta sandwich, structu	4e-10
1ugk_A	138	Synaptotagmin IV, KIAA1342; beta sandwich, structu	1e-04
2cm5_A	166	Rabphilin-3A; protein transport, zinc-finger, Ca2+	9e-15
2cm5_A	166	Rabphilin-3A; protein transport, zinc-finger, Ca2+	9e-14
2cm5_A	166	Rabphilin-3A; protein transport, zinc-finger, Ca2+	6e-13
2cm5_A	166	Rabphilin-3A; protein transport, zinc-finger, Ca2+	1e-04
3fbk_A	153	RGS3, RGP3, regulator of G-protein signaling 3; al	1e-14
3fbk_A	153	RGS3, RGP3, regulator of G-protein signaling 3; al	3e-14
3fbk_A	153	RGS3, RGP3, regulator of G-protein signaling 3; al	3e-11
3fbk_A	153	RGS3, RGP3, regulator of G-protein signaling 3; al	6e-04
1tjx_A	159	Similar to synaptotagmini/P65; C2B domain, calcium	1e-14
1tjx_A	159	Similar to synaptotagmini/P65; C2B domain, calcium	9e-14
1tjx_A	159	Similar to synaptotagmini/P65; C2B domain, calcium	8e-13
1tjx_A	159	Similar to synaptotagmini/P65; C2B domain, calcium	2e-04
2dmg_A	142	KIAA1228 protein; beta-sandwich, structural genomi	1e-14
2dmg_A	142	KIAA1228 protein; beta-sandwich, structural genomi	2e-14
2dmg_A	142	KIAA1228 protein; beta-sandwich, structural genomi	8e-09
2dmg_A	142	KIAA1228 protein; beta-sandwich, structural genomi	1e-05
3n5a_A	138	Synaptotagmin-7; calcium/phospholipid binding prot	1e-14
3n5a_A	138	Synaptotagmin-7; calcium/phospholipid binding prot	1e-14
3n5a_A	138	Synaptotagmin-7; calcium/phospholipid binding prot	3e-12
3n5a_A	138	Synaptotagmin-7; calcium/phospholipid binding prot	4e-05
1w15_A	153	Synaptotagmin IV; metal binding protein, endocytos	3e-14
1w15_A	153	Synaptotagmin IV; metal binding protein, endocytos	1e-13
1w15_A	153	Synaptotagmin IV; metal binding protein, endocytos	1e-11
1w15_A	153	Synaptotagmin IV; metal binding protein, endocytos	1e-04
1wfm_A	138	Synaptotagmin XIII; C2 domain, exocytosis, neurotr	4e-14
1wfm_A	138	Synaptotagmin XIII; C2 domain, exocytosis, neurotr	1e-11
1wfm_A	138	Synaptotagmin XIII; C2 domain, exocytosis, neurotr	6e-10
1wfm_A	138	Synaptotagmin XIII; C2 domain, exocytosis, neurotr	3e-04
2q3x_A	171	Regulating synaptic membrane exocytosis protein 1;	5e-14
2q3x_A	171	Regulating synaptic membrane exocytosis protein 1;	2e-13
2q3x_A	171	Regulating synaptic membrane exocytosis protein 1;	1e-09
2q3x_A	171	Regulating synaptic membrane exocytosis protein 1;	1e-07
2enp_A	147	B/K protein; C2 type 1,beta sandwich, structural g	2e-13
2enp_A	147	B/K protein; C2 type 1,beta sandwich, structural g	9e-13
2enp_A	147	B/K protein; C2 type 1,beta sandwich, structural g	4e-09
2enp_A	147	B/K protein; C2 type 1,beta sandwich, structural g	3e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-13
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-10
3nsj_A	540	Perforin-1; pore forming protein, immune system; H	5e-10
3nsj_A	540	Perforin-1; pore forming protein, immune system; H	1e-09
3nsj_A	540	Perforin-1; pore forming protein, immune system; H	2e-09
3nsj_A	540	Perforin-1; pore forming protein, immune system; H	9e-05
3jzy_A	510	Intersectin 2; C2 domain, structural genomics cons	7e-07
3l9b_A	144	Otoferlin; C2-domain, beta-sheets, cell membrane,	8e-07
3l9b_A	144	Otoferlin; C2-domain, beta-sheets, cell membrane,	8e-05
3l9b_A	144	Otoferlin; C2-domain, beta-sheets, cell membrane,	6e-04
3bxj_A	483	RAS GTPase-activating protein syngap; GTPase activ	1e-06
3bxj_A	483	RAS GTPase-activating protein syngap; GTPase activ	1e-04
3bxj_A	483	RAS GTPase-activating protein syngap; GTPase activ	3e-04
3bxj_A	483	RAS GTPase-activating protein syngap; GTPase activ	6e-04

>2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1 Length = 133

 Score =  151 bits (384), Expect = 5e-43
 Identities = 42/135 (31%), Positives = 68/135 (50%), Gaps = 10/135 (7%)

Query: 259 TASTYDLVERMYFLYVRVVKARELPAMDLTGSIDPFVEVKIGNYKGITKHYEKNQNPQWH 318
           ++ +   V+ +  L V+V+KA +L A D +G  DPF  +++GN +  T    KN NP+W+
Sbjct: 2   SSGSSGDVKDVGILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWN 61

Query: 319 QVFAFSRDRMQASVLEVVIKDKDLV-KDDFVGIVRFDINEVPLRVPPDSPLAPEWYRLED 377
           +VF F    +   VLEV + D+D     DF+G V   +  +           P  Y L++
Sbjct: 62  KVFTFPIKDIH-DVLEVTVFDEDGDKPPDFLGKVAIPLLSIR-------DGQPNCYVLKN 113

Query: 378 KKGE-KIKGELMLAV 391
           K  E   KG + L +
Sbjct: 114 KDLEQAFKGVIYLEM 128

>2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1 Length = 133

 Score = 93.9 bits (234), Expect = 9e-23
 Identities = 35/129 (27%), Positives = 56/129 (43%), Gaps = 10/129 (7%)

Query: 5   KLGVQVVGAHNLLPKDGKGSSSAFVELYFDGQRFRTTIKENDLNPVWNESFYFNISDASK 64
            L V+V+ A +LL  D  G S  F  L     R +T     +LNP WN+ F F I D   
Sbjct: 14  ILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFPIKDIHD 73

Query: 65  LHYLTLEAYIYNNIGDTNSRS-FLGKVCLTGNSFVPLSDSVVLHYPLEKRGIFSHVRGEL 123
                LE  +++   D +    FLGKV +   S      +    Y L+ + +    +G +
Sbjct: 74  ----VLEVTVFDE--DGDKPPDFLGKVAIPLLSIRDGQPNC---YVLKNKDLEQAFKGVI 124

Query: 124 GLKVYITDD 132
            L++ +  +
Sbjct: 125 YLEMDLIYN 133

>2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1 Length = 133

 Score = 88.5 bits (220), Expect = 6e-21
 Identities = 30/132 (22%), Positives = 58/132 (43%), Gaps = 19/132 (14%)

Query: 435 YVRVNVVEAQDLVPTEKNHFPDVYVKAQIGNQVLKTKICQARTLSAVWNEDLLFVAAEPF 494
            ++V V++A DL+  + +   D +   ++GN  L+T     + L+  WN+   F   +  
Sbjct: 14  ILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVY-KNLNPEWNKVFTFPIKDI- 71

Query: 495 EDHLVLTV--EDRVGPGKDEIIGRVIIPLSAIEKRADERIIHSRWFNLEKPVAVDVDQLK 552
            D L +TV  ED       + +G+V IPL +I             + L+       ++  
Sbjct: 72  HDVLEVTVFDEDGD--KPPDFLGKVAIPLLSIRDGQP------NCYVLK-------NKDL 116

Query: 553 KEKFSSRIHLRV 564
           ++ F   I+L +
Sbjct: 117 EQAFKGVIYLEM 128

>2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1 Length = 133

 Score = 88.5 bits (220), Expect = 7e-21
 Identities = 36/131 (27%), Positives = 64/131 (48%), Gaps = 12/131 (9%)

Query: 595 IGILELGILNAVGLHPMKTRDGRGTSDTYCVAKYGHKWVRTRTLVDNLSPKYNEQYTWEV 654
           +GIL++ +L A  L      D  G SD +C+ + G+  ++T T+  NL+P++N+ +T+ +
Sbjct: 12  VGILQVKVLKAADLLAA---DFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFPI 68

Query: 655 FDPATVLTVGVFDNSQLGEKSNGNKDLKIGKVRIRISTLETGRIYTHSYPLLVLHPTGVK 714
            D   VL V VFD      +        +GKV I + ++  G+   + Y L         
Sbjct: 69  KDIHDVLEVTVFD------EDGDKPPDFLGKVAIPLLSIRDGQ--PNCYVLKNKDLEQAF 120

Query: 715 KMGELHLAIRF 725
           K G ++L +  
Sbjct: 121 K-GVIYLEMDL 130

>1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1 Length = 126

 Score =  132 bits (333), Expect = 4e-36
 Identities = 28/127 (22%), Positives = 59/127 (46%), Gaps = 11/127 (8%)

Query: 270 YFLYVRVVKAREL---PAMDLTGSIDPFVEVKIG---NYKGITKHYEKNQNPQWHQVFAF 323
           +   V V++A ++      D+  + DP+VE+ I    + +  T+H+  + NP W++ F F
Sbjct: 3   HKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEF 62

Query: 324 SRDRMQASVLEVVIKDKDLVKDDFVGIVRFDINEVPLRVPPDSPLAPEWYRLEDKKGEKI 383
             D  Q +VLE+ + D + V D+ +G   F ++ + +    +       +         +
Sbjct: 63  ILDPNQENVLEITLMDANYVMDETLGTATFTVSSMKVGEKKE-----VPFIFNQVTEMVL 117

Query: 384 KGELMLA 390
           +  L +A
Sbjct: 118 EMSLEVA 124

>1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1 Length = 126

 Score = 73.5 bits (181), Expect = 1e-15
 Identities = 23/113 (20%), Positives = 42/113 (37%), Gaps = 12/113 (10%)

Query: 437 RVNVVEAQDLV---PTEKNHFPDVYVKAQIG---NQVLKTKICQARTLSAVWNEDLLFVA 490
            V V+ A  +      +    PD YV+  I    +   +T+      ++ VWNE   F+ 
Sbjct: 6   TVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFN-NDINPVWNETFEFIL 64

Query: 491 AEPFEDHLVLTVEDRVGPGKDEIIGRVIIPLSAIEKRADERIIHSRWFNLEKP 543
               E+ L +T+ D      DE +G     +S+++            F   + 
Sbjct: 65  DPNQENVLEITLMDA-NYVMDETLGTATFTVSSMKV----GEKKEVPFIFNQV 112

>1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1 Length = 126

 Score = 72.4 bits (178), Expect = 3e-15
 Identities = 29/133 (21%), Positives = 51/133 (38%), Gaps = 17/133 (12%)

Query: 5   KLGVQVVGAHNLL---PKDGKGSSSAFVELYFDG---QRFRTTIKENDLNPVWNESFYFN 58
           K  V V+ A  +      D   +   +VEL+       R RT    ND+NPVWNE+F F 
Sbjct: 4   KFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFI 63

Query: 59  ISDASKLHYLTLEAYIYNNIGDTNSRSFLGKVCLTGNSFVPLSDSVVLHYPLEKRGIFSH 118
           +    + + L +     N + D      LG    T +S + + +   + +   +      
Sbjct: 64  LDPNQE-NVLEITLMDANYVMD----ETLGTATFTVSS-MKVGEKKEVPFIFNQVT---- 113

Query: 119 VRGELGLKVYITD 131
               L + + +  
Sbjct: 114 -EMVLEMSLEVAS 125

>1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1 Length = 126

 Score = 69.7 bits (171), Expect = 2e-14
 Identities = 23/136 (16%), Positives = 47/136 (34%), Gaps = 19/136 (13%)

Query: 598 LELGILNAVGLHPMKTRDGRGTSDTYCVAKYG---HKWVRTRTLVDNLSPKYNEQYTWEV 654
             + +L A  +      D   T D Y             RTR   ++++P +NE + + +
Sbjct: 5   FTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFIL 64

Query: 655 FDPAT-VLTVGVFDNSQLGEKSNGNKDLKIGKVRIRISTLETGRIYTHSYPLLVLHPTGV 713
                 VL + + D       +N   D  +G     +S+++ G      +          
Sbjct: 65  DPNQENVLEITLMD-------ANYVMDETLGTATFTVSSMKVGEKKEVPFIF-------- 109

Query: 714 KKMGELHLAIRFSCTS 729
            ++ E+ L +     S
Sbjct: 110 NQVTEMVLEMSLEVAS 125

>2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1 Length = 131

 Score =  129 bits (325), Expect = 4e-35
 Identities = 31/120 (25%), Positives = 48/120 (40%), Gaps = 9/120 (7%)

Query: 268 RMYFLYVRVVKARELPAMDLTGSIDPFVEVKIGNYKGITKHYEKNQNPQWHQVFAFSRDR 327
            M  L V V KA+   A +     + +V +K+ N K  T    +   P W Q F F  +R
Sbjct: 3   VMSLLCVGVKKAKFDGAQE---KFNTYVTLKVQNVKSTTIAV-RGSQPSWEQDFMFEINR 58

Query: 328 MQASVLEVVIKDKDLVKDDFVGIVRFDINEVPLRVPPDSPLAPEWYRLEDKKGEKIKGEL 387
           +    L V + +K L+ D  VG V   +  +      +     EW  L D +      E+
Sbjct: 59  LDLG-LTVEVWNKGLIWDTMVGTVWIPLRTIRQS---NEEGPGEWLTL-DSQAIMADSEI 113

>2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1 Length = 131

 Score = 66.9 bits (163), Expect = 2e-13
 Identities = 26/120 (21%), Positives = 47/120 (39%), Gaps = 9/120 (7%)

Query: 432 RLWYVRVNVVEAQDLVPTEKNHFPDVYVKAQIGNQVLKTKICQARTLSAVWNEDLLFVAA 491
            +  + V V +A+     EK    + YV  ++ N    T     R     W +D +F   
Sbjct: 3   VMSLLCVGVKKAKFDGAQEK---FNTYVTLKVQNVKSTTIA--VRGSQPSWEQDFMFEIN 57

Query: 492 EPFEDHLVLTVEDRVGPGKDEIIGRVIIPLSAIEKRADERIIHSRWFNLEKPVAVDVDQL 551
              +  L + V ++ G   D ++G V IPL  I +  +E      W  L+    +   ++
Sbjct: 58  RL-DLGLTVEVWNK-GLIWDTMVGTVWIPLRTIRQSNEEG--PGEWLTLDSQAIMADSEI 113

>2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1 Length = 131

 Score = 53.4 bits (128), Expect = 1e-08
 Identities = 25/114 (21%), Positives = 42/114 (36%), Gaps = 13/114 (11%)

Query: 6   LGVQVVGAHNLLPKDGKGSSSAFVELYFDGQRFRTTIKENDLNPVWNESFYFNISDASKL 65
           L V V  A     ++     + +V L     +  TTI      P W + F F I+     
Sbjct: 7   LCVGVKKAKFDGAQE---KFNTYVTLKVQNVKS-TTIAVRGSQPSWEQDFMFEINRLD-- 60

Query: 66  HYLTLEAYIYNNIGDTNSRSFLGKVCLTGNSFVPLSDSVVLH--YPLEKRGIFS 117
             LT+E +    I DT     +G V +   + +  S+         L+ + I +
Sbjct: 61  LGLTVEVWNKGLIWDT----MVGTVWIPLRT-IRQSNEEGPGEWLTLDSQAIMA 109

>2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 140

 Score =  127 bits (322), Expect = 2e-34
 Identities = 27/124 (21%), Positives = 51/124 (41%), Gaps = 7/124 (5%)

Query: 272 LYVRVVKARELPAMDLTGSIDPFVEVKIGNYKGITKHYEKNQNPQWHQVFAFS---RDRM 328
           L V V  A  +P     G  DP V V   + K  TK  +   NP W+++  F        
Sbjct: 9   LRVIVESASNIPKTK-FGKPDPIVSVIFKDEKKKTKKVDNELNPVWNEILEFDLRGIPLD 67

Query: 329 QASVLEVVIKDKDLV-KDDFVGIVRFDINEVPLRVPPDSPLAPEWYRLEDKKGEKIKGEL 387
            +S L +++KD + + ++  +G     + ++        P   +   L ++KG+     +
Sbjct: 68  FSSSLGIIVKDFETIGQNKLIGTATVALKDLTGDQSRSLPY--KLISLLNEKGQDTGATI 125

Query: 388 MLAV 391
            L +
Sbjct: 126 DLVI 129

>2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 140

 Score = 82.1 bits (203), Expect = 2e-18
 Identities = 33/140 (23%), Positives = 52/140 (37%), Gaps = 14/140 (10%)

Query: 429 HSPRLWYVRVNVVEAQDLVPTEKNHFPDVYVKAQIGNQVLKTKICQARTLSAVWNEDLLF 488
            S     +RV V  A ++ P  K   PD  V     ++  KTK      L+ VWNE L F
Sbjct: 2   SSGSSGMLRVIVESASNI-PKTKFGKPDPIVSVIFKDEKKKTKKVD-NELNPVWNEILEF 59

Query: 489 VAAEPFED---HLVLTVEDRVGPGKDEIIGRVIIPLSAIEKRADERIIHSRWFNLEKPVA 545
                  D    L + V+D    G++++IG   + L  +          S  + L   + 
Sbjct: 60  DLRGIPLDFSSSLGIIVKDFETIGQNKLIGTATVALKDLTGDQSR----SLPYKLISLL- 114

Query: 546 VDVDQLKKEKFSSRIHLRVC 565
                 K +   + I L + 
Sbjct: 115 ----NEKGQDTGATIDLVIG 130

>2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 140

 Score = 79.8 bits (197), Expect = 9e-18
 Identities = 25/137 (18%), Positives = 54/137 (39%), Gaps = 15/137 (10%)

Query: 594 SIGILELGILNAVGLHPMKTRDGRGTSDTYCVAKYGHKWVRTRTLVDNLSPKYNEQYTWE 653
           S G+L + + +A  +   K     G  D      +  +  +T+ + + L+P +NE   ++
Sbjct: 5   SSGMLRVIVESASNIPKTKF----GKPDPIVSVIFKDEKKKTKKVDNELNPVWNEILEFD 60

Query: 654 VFDPAT----VLTVGVFDNSQLGEKSNGNKDLKIGKVRIRISTLETGRIYTHSYPLL-VL 708
           +          L + V D   +G      ++  IG   + +  L   +  +  Y L+ +L
Sbjct: 61  LRGIPLDFSSSLGIIVKDFETIG------QNKLIGTATVALKDLTGDQSRSLPYKLISLL 114

Query: 709 HPTGVKKMGELHLAIRF 725
           +  G      + L I +
Sbjct: 115 NEKGQDTGATIDLVIGY 131

>2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 140

 Score = 76.7 bits (189), Expect = 1e-16
 Identities = 26/99 (26%), Positives = 42/99 (42%), Gaps = 10/99 (10%)

Query: 5   KLGVQVVGAHNLLPKDGKGSSSAFVELYFDGQRFRTTIKENDLNPVWNESFYFNISDASK 64
            L V V  A N+ PK   G     V + F  ++ +T   +N+LNPVWNE   F++     
Sbjct: 8   MLRVIVESASNI-PKTKFGKPDPIVSVIFKDEKKKTKKVDNELNPVWNEILEFDLRGIPL 66

Query: 65  LHYLTLEAYIYNNIGDTNSRS-FLGKVCLTGNSFVPLSD 102
               +L   + +   +T  ++  +G         V L D
Sbjct: 67  DFSSSLGIIVKDF--ETIGQNKLIGTA------TVALKD 97

>3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A Length = 153

 Score =  126 bits (317), Expect = 1e-33
 Identities = 34/136 (25%), Positives = 60/136 (44%), Gaps = 10/136 (7%)

Query: 266 VERMYFLYVRVVKARELPAMDLTGSIDPFVEVKIGNYKGI------TKHYEKNQNPQWHQ 319
            E    + VRV+    L   D+ G+ DP+V V + +          TK  +K+ NP+W++
Sbjct: 16  EENSRIVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNE 75

Query: 320 VFAFSRDRMQASVLEVVIKDKDLV-KDDFVGIVRFDINEVPLRVPPDS-PLAPEWYRLED 377
              F     Q   L   + D++ + +DDF+G V   +  +P   P    P   + + L  
Sbjct: 76  EILFRVHPQQ-HRLLFEVFDENRLTRDDFLGQVDVPLYPLPTENPRLERPYTFKDFVLHP 134

Query: 378 K-KGEKIKGELMLAVW 392
           +    ++KG L L + 
Sbjct: 135 RSHKSRVKGYLRLKMT 150

>3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A Length = 153

 Score = 80.2 bits (198), Expect = 1e-17
 Identities = 32/151 (21%), Positives = 61/151 (40%), Gaps = 21/151 (13%)

Query: 425 SKVYHSPRLWYVRVNVVEAQDLVPTEKNHFPDVYVKAQIGN------QVLKTKICQARTL 478
             +        VRV V+    L   +     D YV+  + +        ++TK  + ++L
Sbjct: 11  GLLEDEENSRIVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIK-KSL 69

Query: 479 SAVWNEDLLFVAAEPFEDHLVLTV--EDRVGPGKDEIIGRVIIPLSAIEKRA--DERIIH 534
           +  WNE++LF    P +  L+  V  E+R+   +D+ +G+V +PL  +       ER   
Sbjct: 70  NPKWNEEILFR-VHPQQHRLLFEVFDENRL--TRDDFLGQVDVPLYPLPTENPRLERPYT 126

Query: 535 SRWFNLEKPVAVDVDQLKKEKFSSRIHLRVC 565
            + F L            K +    + L++ 
Sbjct: 127 FKDFVLHPRS-------HKSRVKGYLRLKMT 150

>3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A Length = 153

 Score = 75.2 bits (185), Expect = 5e-16
 Identities = 32/135 (23%), Positives = 51/135 (37%), Gaps = 18/135 (13%)

Query: 5   KLGVQVVGAHNLLPKDGKGSSSAFVELY------FDGQRFRTTIKENDLNPVWNESFYFN 58
            + V+V+    L  KD  G+S  +V +             +T   +  LNP WNE   F 
Sbjct: 21  IVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNEEILFR 80

Query: 59  ISDASKLHYLTLEAYIYNNIGDTNSRS-FLGKVCLTGNSFVPLSDSVVL-----HYPLEK 112
           +      H L  E +      +  +R  FLG+V +        +  +        + L  
Sbjct: 81  VHPQQ--HRLLFEVFDE----NRLTRDDFLGQVDVPLYPLPTENPRLERPYTFKDFVLHP 134

Query: 113 RGIFSHVRGELGLKV 127
           R   S V+G L LK+
Sbjct: 135 RSHKSRVKGYLRLKM 149

>3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A Length = 153

 Score = 69.4 bits (170), Expect = 6e-14
 Identities = 35/141 (24%), Positives = 60/141 (42%), Gaps = 20/141 (14%)

Query: 596 GILELGILNAVGLHPMKTRDGRGTSDTYCVAKYGHKW------VRTRTLVDNLSPKYNEQ 649
            I+ + ++  +GL      D  G SD Y               V+T+T+  +L+PK+NE+
Sbjct: 20  RIVRVRVIAGIGLAKK---DILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNEE 76

Query: 650 YTWEVFDPATVLTVGVFDNSQLGEKSNGNKDLKIGKVRIRISTLETG---RIYTHSYPLL 706
             + V      L   VFD ++L       +D  +G+V + +  L T        +++   
Sbjct: 77  ILFRVHPQQHRLLFEVFDENRLT------RDDFLGQVDVPLYPLPTENPRLERPYTFKDF 130

Query: 707 VLHPTGVKK--MGELHLAIRF 725
           VLHP   K    G L L + +
Sbjct: 131 VLHPRSHKSRVKGYLRLKMTY 151

>3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} PDB: 3kwt_A* Length = 148

 Score =  123 bits (310), Expect = 7e-33
 Identities = 34/133 (25%), Positives = 58/133 (43%), Gaps = 13/133 (9%)

Query: 5   KLGVQVVGAHNLLPKDGKGSSSAFVELYFDGQRFRTTIKENDLNPVWNESFYFNISDASK 64
           K+ + VV A  L  KD  GSS  +V +     + RT     +LNPVW E+F+F   ++S 
Sbjct: 18  KISITVVCAQGLQAKDKTGSSDPYVTVQVGKTKKRTKTIYGNLNPVWEENFHFECHNSS- 76

Query: 65  LHYLTLEAYIYNNIGDTNSRS--------FLGKVCLTGNSFVPLSDSVVLHYPLEKRGIF 116
              + +     ++   +  +         FLG+  +   +     D   + Y L+KR   
Sbjct: 77  -DRIKVRVLDEDDDIKSRVKQRFKRESDDFLGQTIIEVRTLSGEMD---VWYNLDKRTDK 132

Query: 117 SHVRGELGLKVYI 129
           S V G + L + +
Sbjct: 133 SAVSGAIRLHISV 145

>3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} PDB: 3kwt_A* Length = 148

 Score =  121 bits (305), Expect = 4e-32
 Identities = 37/150 (24%), Positives = 62/150 (41%), Gaps = 21/150 (14%)

Query: 255 HADKTASTYDLVERMYFLYVRVVKARELPAMDLTGSIDPFVEVKIGNYKGITKHYEKNQN 314
            A K +      +    + + VV A+ L A D TGS DP+V V++G  K  TK    N N
Sbjct: 2   FAVKQSVLDGTSKWSAKISITVVCAQGLQAKDKTGSSDPYVTVQVGKTKKRTKTIYGNLN 61

Query: 315 PQWHQVFAFSRDRMQASVLEVVIKDKDLV------------KDDFVGIVRFDINEVPLRV 362
           P W + F F      +  ++V + D+D               DDF+G    ++  +   +
Sbjct: 62  PVWEENFHFECHN-SSDRIKVRVLDEDDDIKSRVKQRFKRESDDFLGQTIIEVRTLSGEM 120

Query: 363 PPDSPLAPEWYRLEDKKGE-KIKGELMLAV 391
                    WY L+ +  +  + G + L +
Sbjct: 121 -------DVWYNLDKRTDKSAVSGAIRLHI 143

>3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} PDB: 3kwt_A* Length = 148

 Score = 91.0 bits (226), Expect = 2e-21
 Identities = 37/158 (23%), Positives = 59/158 (37%), Gaps = 28/158 (17%)

Query: 423 IRSKVYHSPRLW--YVRVNVVEAQDLVPTEKNHFPDVYVKAQIGNQVLKTKICQARTLSA 480
           ++  V      W   + + VV AQ L   +K    D YV  Q+G    +TK      L+ 
Sbjct: 4   VKQSVLDGTSKWSAKISITVVCAQGLQAKDKTGSSDPYVTVQVGKTKKRTKTIY-GNLNP 62

Query: 481 VWNEDLLFVAAEPFEDHLVLTVED-----------RVGPGKDEIIGRVIIPLSAIEKRAD 529
           VW E+  F       D + + V D           R     D+ +G+ II +  +    D
Sbjct: 63  VWEENFHFECHNS-SDRIKVRVLDEDDDIKSRVKQRFKRESDDFLGQTIIEVRTLSGEMD 121

Query: 530 ERIIHSRWFNLEKPVAVDVDQLKKEKFSSRIHLRVCLD 567
                  W+NL+K       +  K   S  I L + ++
Sbjct: 122 ------VWYNLDK-------RTDKSAVSGAIRLHISVE 146

>3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} PDB: 3kwt_A* Length = 148

 Score = 86.0 bits (213), Expect = 8e-20
 Identities = 31/149 (20%), Positives = 57/149 (38%), Gaps = 11/149 (7%)

Query: 583 LRPTAKQLWRPSIGILELGILNAVGLHPMKTRDGRGTSDTYCVAKYGHKWVRTRTLVDNL 642
           ++ +           + + ++ A GL      D  G+SD Y   + G    RT+T+  NL
Sbjct: 4   VKQSVLDGTSKWSAKISITVVCAQGLQAK---DKTGSSDPYVTVQVGKTKKRTKTIYGNL 60

Query: 643 SPKYNEQYTWEVFDPATVLTVGVFD-----NSQLGEKSNGNKDLKIGKVRIRISTLETGR 697
           +P + E + +E  + +  + V V D      S++ ++     D  +G+  I + TL    
Sbjct: 61  NPVWEENFHFECHNSSDRIKVRVLDEDDDIKSRVKQRFKRESDDFLGQTIIEVRTLSGE- 119

Query: 698 IYTHSYPLLVLHPTGVKKMGELHLAIRFS 726
                Y L           G + L I   
Sbjct: 120 -MDVWYNLDKRTDKSAVS-GAIRLHISVE 146

>2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1 Length = 167

 Score =  120 bits (303), Expect = 1e-31
 Identities = 29/121 (23%), Positives = 48/121 (39%), Gaps = 9/121 (7%)

Query: 267 ERMYFLYVRVVKARELPAMDLTGSIDPFVEVKIGNYKGITKHYEKNQNPQWHQVFAFSRD 326
             +  L V V KA+   A +     + +V +K+ N +  T    +   P W Q F F  +
Sbjct: 11  GILSLLCVGVKKAKFDGAQE---KFNTYVTLKVQNVESTTIAV-RGSQPSWEQDFMFEIN 66

Query: 327 RMQASVLEVVIKDKDLVKDDFVGIVRFDINEVPLRVPPDSPLAPEWYRLEDKKGEKIKGE 386
           R+    L V + +K L+ D  VG V   +  +      +     EW  L D +      E
Sbjct: 67  RLDLG-LTVEVWNKGLIWDTMVGTVWIPLRTIRQS---NEEGPGEWLTL-DSQAIMADSE 121

Query: 387 L 387
           +
Sbjct: 122 I 122

>2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1 Length = 167

 Score = 62.3 bits (151), Expect = 3e-11
 Identities = 26/110 (23%), Positives = 43/110 (39%), Gaps = 9/110 (8%)

Query: 435 YVRVNVVEAQDLVPTEKNHFPDVYVKAQIGNQVLKTKICQARTLSAVWNEDLLFVAAEPF 494
            + V V +A+     EK    + YV  ++ N    T     R     W +D +F      
Sbjct: 15  LLCVGVKKAKFDGAQEKF---NTYVTLKVQNVESTTIA--VRGSQPSWEQDFMFEINRL- 68

Query: 495 EDHLVLTVEDRVGPGKDEIIGRVIIPLSAIEKRADERIIHSRWFNLEKPV 544
           +  L + V ++ G   D ++G V IPL  I +  +E      W  L+   
Sbjct: 69  DLGLTVEVWNK-GLIWDTMVGTVWIPLRTIRQSNEEG--PGEWLTLDSQA 115

>2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1 Length = 167

 Score = 49.6 bits (118), Expect = 6e-07
 Identities = 25/112 (22%), Positives = 40/112 (35%), Gaps = 13/112 (11%)

Query: 6   LGVQVVGAHNLLPKDGKGSSSAFVELYFDGQRFRTTIKENDLNPVWNESFYFNISDASKL 65
           L V V  A     ++     + +V L        TTI      P W + F F I+     
Sbjct: 16  LCVGVKKAKFDGAQE---KFNTYVTLKVQNVES-TTIAVRGSQPSWEQDFMFEINRLDLG 71

Query: 66  HYLTLEAYIYNNIGDTNSRSFLGKVCLTGNSFVPLSDSVVLH--YPLEKRGI 115
             LT+E +    I DT     +G V +   + +  S+         L+ + I
Sbjct: 72  --LTVEVWNKGLIWDT----MVGTVWIPLRT-IRQSNEEGPGEWLTLDSQAI 116

>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A Length = 296

 Score =  124 bits (313), Expect = 1e-31
 Identities = 73/311 (23%), Positives = 118/311 (37%), Gaps = 63/311 (20%)

Query: 272 LYVRVVKARELPAMDLTGSIDPFVEVKIGNYKGI---TKHYEKNQNPQWHQVFAF--SRD 326
           L VR+++A +LPA D  G  DP+V++ +   +     TK + K  NP +++ F F     
Sbjct: 22  LVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPLA 81

Query: 327 RMQASVLEVVIKDKD-LVKDDFVGIVRFDINEVPLRVPPDSPLAPEWYRLEDKKGEK-IK 384
            +    L   + D D   + D +G V  D        PPD PL   W  + +   EK   
Sbjct: 82  ELAQRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQPPDRPL---WRDILEGGSEKADL 138

Query: 385 GELMLAVWIGTQADEAFSDAWHSDAATPVDSTPAITAVIRSKVYHSPRLWYVRVNVVEAQ 444
           GEL  +                                    + + P    + V +++A 
Sbjct: 139 GELNFS------------------------------------LCYLPTAGLLTVTIIKAS 162

Query: 445 DLVPTEKNHFPDVYVKAQIGNQV-----LKTKICQARTLSAVWNEDLLF-VAAEPFED-H 497
           +L   +   F D YVKA + ++       KT I +  TL+  +NE L+F VA E  E+  
Sbjct: 163 NLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKK-NTLNPTYNEALVFDVAPESVENVG 221

Query: 498 LVLTVEDRVGPGKDEIIGRVIIPLSAIEKRADE---------RIIHSRWFNLEKPVAVDV 548
           L + V D    G +E+IG   +   A +    E         R     W  L +   +  
Sbjct: 222 LSIAVVDYDCIGHNEVIGVCRVGPEAADPHGREHWAEMLANPRKPVEHWHQLVEEKTLSS 281

Query: 549 DQLKKEKFSSR 559
                +  S +
Sbjct: 282 FTKGGKGLSEK 292

>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A Length = 296

 Score = 88.0 bits (218), Expect = 4e-19
 Identities = 57/265 (21%), Positives = 104/265 (39%), Gaps = 57/265 (21%)

Query: 437 RVNVVEAQDLVPTEKNHFPDVYVKAQI---GNQVLKTKICQARTLSAVWNEDLLF--VAA 491
            V +++A DL   + N F D YVK  +     +  +TK+   +TL+ ++NE   F    A
Sbjct: 23  VVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKV-HRKTLNPIFNETFQFSVPLA 81

Query: 492 EPFEDHLVLTVEDRVGPGKDEIIGRVIIPLSAIEKRADERIIHSRWFNLEKPVAVDVDQL 551
           E  +  L  +V D     + ++IG+V++    + + A++      W ++ +         
Sbjct: 82  ELAQRKLHFSVYDFDRFSRHDLIGQVVLD--NLLELAEQPPDRPLWRDILEGG------- 132

Query: 552 KKEKFSSRIHLRVCLDGGYHVLDESTHYSSDLRPTAKQLWRPSIGILELGILNAVGLHPM 611
            ++     ++  +C                         + P+ G+L + I+ A  L  M
Sbjct: 133 SEKADLGELNFSLC-------------------------YLPTAGLLTVTIIKASNLKAM 167

Query: 612 KTRDGRGTSDTYCVAKYGH-----KWVRTRTLVDNLSPKYNEQYTWEV--FDPATV-LTV 663
              D  G SD Y  A         K  +T    + L+P YNE   ++V       V L++
Sbjct: 168 ---DLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVAPESVENVGLSI 224

Query: 664 GVFDNSQLGEKSNGNKDLKIGKVRI 688
            V D   +G       +  IG  R+
Sbjct: 225 AVVDYDCIG------HNEVIGVCRV 243

>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A Length = 296

 Score = 76.8 bits (189), Expect = 2e-15
 Identities = 33/126 (26%), Positives = 58/126 (46%), Gaps = 8/126 (6%)

Query: 5   KLGVQVVGAHNLLPKDGKGSSSAFVELYF---DGQRFRTTIKENDLNPVWNESFYFNISD 61
           +L V+++ A +L  KD  G S  +V++Y      ++F+T +    LNP++NE+F F++  
Sbjct: 21  QLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPL 80

Query: 62  ASKLHYLTLEAYIYNNIGDTNSR-SFLGKVCLTGNS-FVPLSDSVVLHYPLEKRGIFSHV 119
            ++L    L   +Y+   D  SR   +G+V L              L   + + G     
Sbjct: 81  -AELAQRKLHFSVYDF--DRFSRHDLIGQVVLDNLLELAEQPPDRPLWRDILEGGSEKAD 137

Query: 120 RGELGL 125
            GEL  
Sbjct: 138 LGELNF 143

>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A Length = 296

 Score = 66.4 bits (162), Expect = 7e-12
 Identities = 23/93 (24%), Positives = 43/93 (46%), Gaps = 7/93 (7%)

Query: 5   KLGVQVVGAHNLLPKDGKGSSSAFVELYF--DGQRF---RTTIKENDLNPVWNESFYFNI 59
            L V ++ A NL   D  G S  +V+     +G+R    +T+IK+N LNP +NE+  F++
Sbjct: 153 LLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDV 212

Query: 60  SDASKLHYLTLEAYIYNNIGDTNSRSFLGKVCL 92
           +    +  + L   + +          +G   +
Sbjct: 213 A-PESVENVGLSIAVVDY-DCIGHNEVIGVCRV 243

>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 Length = 284

 Score =  122 bits (309), Expect = 4e-31
 Identities = 69/306 (22%), Positives = 122/306 (39%), Gaps = 66/306 (21%)

Query: 272 LYVRVVKARELPAMDLTGSIDPFVEVKIGNYKGI---TKHYEKNQNPQWHQVFAF--SRD 326
           L V +++A ELPA+D+ G+ DP+V+V +   K     TK + K  NP +++ F F     
Sbjct: 21  LLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYS 80

Query: 327 RMQASVLEVVIKDKDLV-KDDFVGIVRFDINEVPLRVPPDSPLAPEWYRL--EDKKGEKI 383
            +    L + + D D   K D +G  +      P+       +  EW  L   +K+ ++ 
Sbjct: 81  ELAGKTLVMAVYDFDRFSKHDIIGEFKV-----PMNTVDFGHVTEEWRDLQSAEKEEQEK 135

Query: 384 KGELMLAVWIGTQADEAFSDAWHSDAATPVDSTPAITAVIRSKVYHSPRLWYVRVNVVEA 443
            G++  ++     A +                                    + V ++EA
Sbjct: 136 LGDICFSLRYVPTAGK------------------------------------LTVVILEA 159

Query: 444 QDLVPTEKNHFPDVYVKAQIGNQV-----LKTKICQARTLSAVWNEDLLF-VAAEPFED- 496
           ++L   +     D YVK  +          KT I +  TL+  +NE   F V  E  +  
Sbjct: 160 KNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKK-NTLNPYYNESFSFEVPFEQIQKV 218

Query: 497 HLVLTVEDRVGPGKDEIIGRVIIPLSAIEKR--------ADERIIHSRWFNLEKPVAVDV 548
            +V+TV D    GK++ IG+V +  ++            A+ R   ++W  L+    VD 
Sbjct: 219 QVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQWHTLQVEEEVDA 278

Query: 549 D-QLKK 553
              +KK
Sbjct: 279 MLAVKK 284

>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 Length = 284

 Score = 91.8 bits (228), Expect = 2e-20
 Identities = 64/274 (23%), Positives = 105/274 (38%), Gaps = 58/274 (21%)

Query: 437 RVNVVEAQDLVPTEKNHFPDVYVKAQI---GNQVLKTKICQARTLSAVWNEDLLF--VAA 491
            V +++A +L   +     D YVK  +     +  +TK+ + +TL+ V+NE   F    +
Sbjct: 22  LVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHR-KTLNPVFNEQFTFKVPYS 80

Query: 492 EPFEDHLVLTVEDRVGPGKDEIIGRVIIPLSAIEKRADERIIHSRWFNLEKPVAVDVDQL 551
           E     LV+ V D     K +IIG   +P++ +    D   +   W +L+     + ++L
Sbjct: 81  ELAGKTLVMAVYDFDRFSKHDIIGEFKVPMNTV----DFGHVTEEWRDLQSAEKEEQEKL 136

Query: 552 KKEKFSSRIHLRVCLDGGYHVLDESTHYSSDLRPTAKQLWRPSIGILELGILNAVGLHPM 611
               FS R                                 P+ G L + IL A  L  M
Sbjct: 137 GDICFSLRYV-------------------------------PTAGKLTVVILEAKNLKKM 165

Query: 612 KTRDGRGTSDTYCVAKYGH-----KWVRTRTLVDNLSPKYNEQYTWEV--FDPATV-LTV 663
              D  G SD Y            K  +T    + L+P YNE +++EV       V + V
Sbjct: 166 ---DVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVV 222

Query: 664 GVFDNSQLGEKSNGNKDLKIGKVRIRISTLETGR 697
            V D  ++G      K+  IGKV +  ++     
Sbjct: 223 TVLDYDKIG------KNDAIGKVFVGYNSTGAEL 250

>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 Length = 284

 Score = 71.0 bits (174), Expect = 2e-13
 Identities = 28/127 (22%), Positives = 53/127 (41%), Gaps = 7/127 (5%)

Query: 5   KLGVQVVGAHNLLPKDGKGSSSAFVELYF---DGQRFRTTIKENDLNPVWNESFYFNISD 61
           +L V ++ A  L   D  G+S  +V+++      ++F T +    LNPV+NE F F +  
Sbjct: 20  QLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPY 79

Query: 62  ASKLHYLTLEAYIYNNIGDTNSR-SFLGKVCLTGNSFVPLSDSVVLHYPLEKRGIFSHVR 120
            S+L   TL   +Y+   D  S+   +G+  +  N+      +                 
Sbjct: 80  -SELAGKTLVMAVYDF--DRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQSAEKEEQEKL 136

Query: 121 GELGLKV 127
           G++   +
Sbjct: 137 GDICFSL 143

>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 Length = 284

 Score = 66.0 bits (161), Expect = 1e-11
 Identities = 29/93 (31%), Positives = 46/93 (49%), Gaps = 7/93 (7%)

Query: 5   KLGVQVVGAHNLLPKDGKGSSSAFV--ELYFDGQRF---RTTIKENDLNPVWNESFYFNI 59
           KL V ++ A NL   D  G S  +V   L  +G+R    +TTIK+N LNP +NESF F +
Sbjct: 151 KLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEV 210

Query: 60  SDASKLHYLTLEAYIYNNIGDTNSRSFLGKVCL 92
               ++  + +   + +          +GKV +
Sbjct: 211 PF-EQIQKVQVVVTVLDY-DKIGKNDAIGKVFV 241

>3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus} Length = 176

 Score =  105 bits (263), Expect = 3e-26
 Identities = 32/136 (23%), Positives = 59/136 (43%), Gaps = 8/136 (5%)

Query: 272 LYVRVVKARELPAMDLTGSIDPFVEVKIGNYKGI------TKHYEKNQNPQWHQVFAFSR 325
           + V+V+    L   D+ G+ DP+V V + +          TK  +K+ NP+W++   F  
Sbjct: 10  VRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEEILFRV 69

Query: 326 DRMQASVLEVVIKDKDLVKDDFVGIVRFDINEVPLRVPPD-SPLAPEWYRLEDKKG-EKI 383
              +  +L  V  +  L +DDF+G V   +  +P   P    P   + + L  +    ++
Sbjct: 70  LPQRHRILFEVFDENRLTRDDFLGQVDVPLYPLPTENPRMERPYTFKDFVLHPRSHKSRV 129

Query: 384 KGELMLAVWIGTQADE 399
           KG L L +    +   
Sbjct: 130 KGYLRLKMTYLPKNGS 145

>3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus} Length = 176

 Score = 81.1 bits (200), Expect = 8e-18
 Identities = 36/173 (20%), Positives = 61/173 (35%), Gaps = 21/173 (12%)

Query: 5   KLGVQVVGAHNLLPKDGKGSSSAFVELYFDG------QRFRTTIKENDLNPVWNESFYFN 58
            + V+V+    L  KD  G+S  +V +             +T   +  LNP WNE   F 
Sbjct: 9   VVRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEEILFR 68

Query: 59  ISDASKLHYLTLEAYIYNNIGDTNSRSFLGKVCLTGNSFVPLSDSVVL-----HYPLEKR 113
           +      H +  E +  N +       FLG+V +        +  +        + L  R
Sbjct: 69  VLPQR--HRILFEVFDENRLT---RDDFLGQVDVPLYPLPTENPRMERPYTFKDFVLHPR 123

Query: 114 GIFSHVRGELGLKVYI-----TDDPSIKSSTPLPAAETFSTKDPSITHTHAQP 161
              S V+G L LK+       ++D +   +  L        +  + TH    P
Sbjct: 124 SHKSRVKGYLRLKMTYLPKNGSEDENADQAEELEPGWVVLDQPDAATHLPHPP 176

>3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus} Length = 176

 Score = 77.2 bits (190), Expect = 2e-16
 Identities = 37/168 (22%), Positives = 67/168 (39%), Gaps = 17/168 (10%)

Query: 435 YVRVNVVEAQDLVPTEKNHFPDVYVKAQIGN------QVLKTKICQARTLSAVWNEDLLF 488
            VRV V+    L   +     D YV+  + +        ++TK  + ++L+  WNE++LF
Sbjct: 9   VVRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIK-KSLNPKWNEEILF 67

Query: 489 VAAEPFEDHLVLTVEDRVGPGKDEIIGRVIIPLSAI--EKRADERIIHSRWFNLEKPVAV 546
               P    ++  V D     +D+ +G+V +PL  +  E    ER    + F L      
Sbjct: 68  R-VLPQRHRILFEVFDENRLTRDDFLGQVDVPLYPLPTENPRMERPYTFKDFVLHPRS-- 124

Query: 547 DVDQLKKEKFSSRIHLRVCLDGGYHVLDESTHYSSDLRPTAKQLWRPS 594
                 K +    + L++         DE+   + +L P    L +P 
Sbjct: 125 -----HKSRVKGYLRLKMTYLPKNGSEDENADQAEELEPGWVVLDQPD 167

>3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus} Length = 176

 Score = 74.9 bits (184), Expect = 1e-15
 Identities = 34/148 (22%), Positives = 62/148 (41%), Gaps = 20/148 (13%)

Query: 589 QLWRPSIGILELGILNAVGLHPMKTRDGRGTSDTYCVAKYGHKW------VRTRTLVDNL 642
           +L      ++ + ++  +GL      D  G SD Y               V+T+T+  +L
Sbjct: 1   ELHNDDTRVVRVKVIAGIGLAKK---DILGASDPYVRVTLYDPMSGILTSVQTKTIKKSL 57

Query: 643 SPKYNEQYTWEVFDPATVLTVGVFDNSQLGEKSNGNKDLKIGKVRIRISTLETGRI---Y 699
           +PK+NE+  + V      +   VFD ++L       +D  +G+V + +  L T       
Sbjct: 58  NPKWNEEILFRVLPQRHRILFEVFDENRLT------RDDFLGQVDVPLYPLPTENPRMER 111

Query: 700 THSYPLLVLHPTGVKK--MGELHLAIRF 725
            +++   VLHP   K    G L L + +
Sbjct: 112 PYTFKDFVLHPRSHKSRVKGYLRLKMTY 139

>1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2 Length = 136

 Score =  100 bits (252), Expect = 4e-25
 Identities = 29/122 (23%), Positives = 54/122 (44%), Gaps = 9/122 (7%)

Query: 272 LYVRVVKARELPAMDLTGSIDPFVEVKIGNYKGITK-HYEKNQNPQWHQVFAFSRDRMQA 330
           L V +V A+ L   D   ++DP+V++        +         P+W++ F F+      
Sbjct: 12  LEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSEGT- 70

Query: 331 SVLEVVIKDKDLV-KDDFVGIVRFDINEVPLRVPPDSPLAPEWYRLEDKKGEKIKGELML 389
           + L+  I DKD+  +DD VG     +      V  +  + P  Y +   +  + KGE+ +
Sbjct: 71  TELKAKIFDKDVGTEDDAVGEATIPLEP----VFVEGSIPPTAYNVVKDE--EYKGEIWV 124

Query: 390 AV 391
           A+
Sbjct: 125 AL 126

>1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2 Length = 136

 Score = 87.4 bits (217), Expect = 2e-20
 Identities = 27/132 (20%), Positives = 52/132 (39%), Gaps = 18/132 (13%)

Query: 436 VRVNVVEAQDLVPTEKNHFPDVYVKAQIGNQVLKTKICQARTLSAVWNEDLLFVAAEPFE 495
           + V +V A+ L   +  +  D YV+     Q  K+ + +    +  WNE  +F  +E   
Sbjct: 12  LEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSEG-T 70

Query: 496 DHLVLTV--EDRVGPGKDEIIGRVIIPLSAIEKRADERIIHSRWFNLEKPVAVDVDQLKK 553
             L   +  +D     +D+ +G   IPL  +     E  I    +N+          +K 
Sbjct: 71  TELKAKIFDKDVG--TEDDAVGEATIPLEPVFV---EGSIPPTAYNV----------VKD 115

Query: 554 EKFSSRIHLRVC 565
           E++   I + + 
Sbjct: 116 EEYKGEIWVALS 127

>1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2 Length = 136

 Score = 77.4 bits (191), Expect = 6e-17
 Identities = 27/132 (20%), Positives = 52/132 (39%), Gaps = 13/132 (9%)

Query: 595 IGILELGILNAVGLHPMKTRDGRGTSDTYCVAKYGHKWVRTRTLVD-NLSPKYNEQYTWE 653
            G LE+ +++A GL      D     D Y       +  ++        +P++NE + + 
Sbjct: 9   HGTLEVVLVSAKGLEDA---DFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFT 65

Query: 654 VFDPATVLTVGVFDNSQLGEKSNGNKDLKIGKVRIRISTLETGRIYTHSYPLLVLHPTGV 713
           V +  T L   +FD      K  G +D  +G+  I +  +        +   +V      
Sbjct: 66  VSEGTTELKAKIFD------KDVGTEDDAVGEATIPLEPVFVEGSIPPTAYNVVKDE--- 116

Query: 714 KKMGELHLAIRF 725
           +  GE+ +A+ F
Sbjct: 117 EYKGEIWVALSF 128

>1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2 Length = 136

 Score = 76.6 bits (189), Expect = 1e-16
 Identities = 29/136 (21%), Positives = 52/136 (38%), Gaps = 13/136 (9%)

Query: 5   KLGVQVVGAHNLLPKDGKGSSSAFVELYFDGQRFRT-TIKENDLNPVWNESFYFNISDAS 63
            L V +V A  L   D   +   +V+L    Q  ++   +     P WNE+F F +S+ +
Sbjct: 11  TLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSEGT 70

Query: 64  KLHYLTLEAYIYNNIGDTNSRS-FLGKVCLTGNSFVPLSDSVVLHYPLEKRGIFSHVRGE 122
               L  +  I++   D  +    +G+  +               Y + K       +GE
Sbjct: 71  --TELKAK--IFDK--DVGTEDDAVGEATIPLEPVFVEGSIPPTAYNVVKDE---EYKGE 121

Query: 123 LGLKVYITDDPSIKSS 138
             + V ++  PS  SS
Sbjct: 122 --IWVALSFKPSGPSS 135

>1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A Length = 749

 Score =  105 bits (262), Expect = 2e-23
 Identities = 29/119 (24%), Positives = 58/119 (48%), Gaps = 8/119 (6%)

Query: 263 YDLVERM--YFLYVRVVKAREL---PAMDLTGSIDPFVEVKIG---NYKGITKHYEKNQN 314
           + +VE    +   V V++A ++      D+  + DP+VE+ I    + +  T+H+  + N
Sbjct: 9   HIIVEHQYSHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDIN 68

Query: 315 PQWHQVFAFSRDRMQASVLEVVIKDKDLVKDDFVGIVRFDINEVPLRVPPDSPLAPEWY 373
           P W++ F F  D  Q +VLE+ + D + V D+ +G   F ++ + +    + P      
Sbjct: 69  PVWNETFEFILDPNQENVLEITLMDANYVMDETLGTATFTVSSMKVGEKKEVPFIFNQV 127

>1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A Length = 749

 Score = 65.3 bits (158), Expect = 7e-11
 Identities = 34/213 (15%), Positives = 67/213 (31%), Gaps = 19/213 (8%)

Query: 424 RSKVYHSPRLWYVRVNVVEAQDL---VPTEKNHFPDVYVKAQIG---NQVLKTKICQART 477
              V H        V V+ A  +      +    PD YV+  I    +   +T+      
Sbjct: 9   HIIVEHQYS-HKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRH-FNND 66

Query: 478 LSAVWNEDLLFVAAEPFEDHLVLTVEDRVGPGKDEIIGRVIIPLSAIEKRADERIIHSRW 537
           ++ VWNE   F+     E+ L +T+ D      DE +G     +S+++    + +     
Sbjct: 67  INPVWNETFEFILDPNQENVLEITLMDA-NYVMDETLGTATFTVSSMKVGEKKEVPFIFN 125

Query: 538 FNLEKPVAVDVDQLKKEKFSSRIHLRVCLDGGYHVLDESTHYSSDLRPTAKQLWRPSIGI 597
                            + S  +     L     + D+   +    +   ++  +  +G 
Sbjct: 126 ----------QVTEMVLEMSLEVCSCPDLRFSMALCDQEKTFRQQRKEHIRESMKKLLGP 175

Query: 598 LELGILNAVGLHPMKTRDGRGTSDTYCVAKYGH 630
                L++    P+    G G      V   G 
Sbjct: 176 KNSEGLHSARDVPVVAILGSGGGFRAMVGFSGV 208

>1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A Length = 749

 Score = 61.1 bits (147), Expect = 1e-09
 Identities = 25/95 (26%), Positives = 37/95 (38%), Gaps = 11/95 (11%)

Query: 5   KLGVQVVGAHNLLPKDGK---GSSSAFVELY---FDGQRFRTTIKENDLNPVWNESFYFN 58
           K  V V+ A  +          +   +VEL+       R RT    ND+NPVWNE+F F 
Sbjct: 19  KFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFI 78

Query: 59  ISDASKLHYLTLEAYIYNNIGDTNSRSFLGKVCLT 93
           +    +     LE  + +   +      LG    T
Sbjct: 79  LDPNQE---NVLEITLMDA--NYVMDETLGTATFT 108

>1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A Length = 749

 Score = 49.2 bits (116), Expect = 7e-06
 Identities = 20/113 (17%), Positives = 40/113 (35%), Gaps = 11/113 (9%)

Query: 596 GILELGILNAVGLHPMKTRDGRGTSDTYCVAKYG---HKWVRTRTLVDNLSPKYNEQYTW 652
               + +L A  +      D   T D Y             RTR   ++++P +NE + +
Sbjct: 18  HKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEF 77

Query: 653 EVFDPAT-VLTVGVFDNSQLGEKSNGNKDLKIGKVRIRISTLETGRIYTHSYP 704
            +      VL + + D       +N   D  +G     +S+++ G      + 
Sbjct: 78  ILDPNQENVLEITLMD-------ANYVMDETLGTATFTVSSMKVGEKKEVPFI 123

>2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1 Length = 173

 Score = 96.5 bits (240), Expect = 3e-23
 Identities = 24/138 (17%), Positives = 44/138 (31%), Gaps = 8/138 (5%)

Query: 256 ADKTASTYDLVERMYFLYVRVVKARELPAMDLTGSIDPFVEVKIGNYKGITKHYEKNQNP 315
           +     +   +     L + V+ A+            P+VEV +      T+      +P
Sbjct: 22  SGSQLGSMGSLTMKSQLQITVISAKLKENKKNWFGPSPYVEVTVDGQSKKTEKCNNTNSP 81

Query: 316 QWHQVFAFSRDRMQASVLEVVIKDKDLV-KDDFVGIVRFDINEVPLRVPPDSPLAPEWYR 374
           +W Q           S L   +     +  D  +G    DI E       +  L      
Sbjct: 82  KWKQPLTVIVTP--VSKLHFRVWSHQTLKSDVLLGTAALDIYETL--KSNNMKLEEVVVT 137

Query: 375 LE---DKKGEKIKGELML 389
           L+   DK+  +  G+L +
Sbjct: 138 LQLGGDKEPTETIGDLSI 155

>2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1 Length = 173

 Score = 84.5 bits (209), Expect = 6e-19
 Identities = 26/133 (19%), Positives = 47/133 (35%), Gaps = 11/133 (8%)

Query: 436 VRVNVVEAQDLVPTEKNHFPDVYVKAQIGNQVLKTKICQARTLSAVWNEDLLFVAAEPFE 495
           +++ V+ A+     +    P  YV+  +  Q  KT+ C   T S  W + L  +      
Sbjct: 38  LQITVISAKLKENKKNWFGPSPYVEVTVDGQSKKTEKCN-NTNSPKWKQPLTVIVTP--V 94

Query: 496 DHLVLTVEDRVGPGKDEIIGRVIIPLSAIEKRADERIIHSRWFNLEKPVAVDVDQLKKEK 555
             L   V        D ++G   + +    K ++   +      L+           KE 
Sbjct: 95  SKLHFRVWSHQTLKSDVLLGTAALDIYETLK-SNNMKLEEVVVTLQL-------GGDKEP 146

Query: 556 FSSRIHLRVCLDG 568
             +   L +CLDG
Sbjct: 147 TETIGDLSICLDG 159

>2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1 Length = 173

 Score = 83.0 bits (205), Expect = 2e-18
 Identities = 28/143 (19%), Positives = 54/143 (37%), Gaps = 15/143 (10%)

Query: 5   KLGVQVVGAHNLLPKDGKGSSSAFVELYFDGQRFRTTIKENDLNPVWNESFYFNISDASK 64
           +L + V+ A     K      S +VE+  DGQ  +T    N  +P W +     ++  SK
Sbjct: 37  QLQITVISAKLKENKKNWFGPSPYVEVTVDGQSKKTEKCNNTNSPKWKQPLTVIVTPVSK 96

Query: 65  LHYLTLEAYIYNNIGDTNSRSFLGKVCLTGNSFVPLSDSVV--LHYPLEKRGIFSH--VR 120
           LH      + +  +    S   LG   L     +  ++  +  +   L+  G        
Sbjct: 97  LH---FRVWSHQTLK---SDVLLGTAALDIYETLKSNNMKLEEVVVTLQLGGDKEPTETI 150

Query: 121 GEL-----GLKVYITDDPSIKSS 138
           G+L     GL++      + +++
Sbjct: 151 GDLSICLDGLQLESEVVTNGETT 173

>2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1 Length = 173

 Score = 69.1 bits (169), Expect = 1e-13
 Identities = 24/165 (14%), Positives = 50/165 (30%), Gaps = 16/165 (9%)

Query: 561 HLRVCLDGGYHVLDESTHYSSDLRPTAKQLWRPSIGILELGILNAVGLHPMKTRDGRGTS 620
           H      G  ++  +    S     +   L       L++ +++A               
Sbjct: 3   HHHHHSSGRENLYFQGMSDSGSQLGSMGSL--TMKSQLQITVISAKLKENK---KNWFGP 57

Query: 621 DTYCVAKYGHKWVRTRTLVDNLSPKYNEQYTWEVFDPATVLTVGVFDNSQLGEKSNGNKD 680
             Y       +  +T    +  SPK+ +  T  V  P + L   V+ +  L        D
Sbjct: 58  SPYVEVTVDGQSKKTEKCNNTNSPKWKQPLTVIV-TPVSKLHFRVWSHQTLK------SD 110

Query: 681 LKIGKVRIRISTLETGRIYTHSYPLLVLHPTG----VKKMGELHL 721
           + +G   + I              ++ L   G     + +G+L +
Sbjct: 111 VLLGTAALDIYETLKSNNMKLEEVVVTLQLGGDKEPTETIGDLSI 155

>3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A Length = 132

 Score = 94.4 bits (235), Expect = 5e-23
 Identities = 31/130 (23%), Positives = 52/130 (40%), Gaps = 7/130 (5%)

Query: 2   RNLKLGVQVVGAHNLLPKDGKGSSSAFVELYFDG--QRFRTTIKENDLNPVWNESFYFNI 59
             +K+ + V+ A NL  KD       F ++  DG  Q   T   +N L+P WN+ +   +
Sbjct: 3   EFIKIRLTVLCAKNLAKKDFFRLPDPFAKIVVDGSGQCHSTDTVKNTLDPKWNQHYDLYV 62

Query: 60  SDASKLHYLTLEAYIYNNIGDTNSRSFLGKVCLTGNSFVPLSDSVV--LHYPLEKRGIFS 117
                   +T+  + +  I       FLG V L  N+   L D+    L           
Sbjct: 63  GKTDS---ITISVWNHKKIHKKQGAGFLGCVRLLSNAISRLKDTGYQRLDLCKLNPSDTD 119

Query: 118 HVRGELGLKV 127
            VRG++ + +
Sbjct: 120 AVRGQIVVSL 129

>3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A Length = 132

 Score = 82.0 bits (203), Expect = 1e-18
 Identities = 23/127 (18%), Positives = 49/127 (38%), Gaps = 15/127 (11%)

Query: 272 LYVRVVKARELPAMDLTGSIDPFVEVKIGNYKGI--TKHYEKNQNPQWHQVFAFSRDRMQ 329
           + + V+ A+ L   D     DPF ++ +        T   +   +P+W+Q +     +  
Sbjct: 7   IRLTVLCAKNLAKKDFFRLPDPFAKIVVDGSGQCHSTDTVKNTLDPKWNQHYDLYVGKTD 66

Query: 330 ASVLEVVIKDKDLVKDD--FVGIVRFDINEVPLRVPPDSPLAPEWYRLEDKK-----GEK 382
           +  + V    K   K    F+G VR   N +             + RL+  K      + 
Sbjct: 67  SITISVWNHKKIHKKQGAGFLGCVRLLSNAISRLKD------TGYQRLDLCKLNPSDTDA 120

Query: 383 IKGELML 389
           ++G++++
Sbjct: 121 VRGQIVV 127

>3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A Length = 132

 Score = 67.8 bits (166), Expect = 1e-13
 Identities = 22/136 (16%), Positives = 48/136 (35%), Gaps = 20/136 (14%)

Query: 436 VRVNVVEAQDLVPTEKNHFPDVYVKAQI--GNQVLKTKICQARTLSAVWNEDLLFVAAEP 493
           +R+ V+ A++L   +    PD + K  +    Q   T   +  TL   WN+         
Sbjct: 7   IRLTVLCAKNLAKKDFFRLPDPFAKIVVDGSGQCHSTDTVK-NTLDPKWNQHYDLY--VG 63

Query: 494 FEDHLVLTVEDRVGPGKDE---IIGRVIIPLSAIEKRADERIIHSRWFNLEKPVAVDVDQ 550
             D + ++V +     K +    +G V +  +AI +  D       +  L+         
Sbjct: 64  KTDSITISVWNHKKIHKKQGAGFLGCVRLLSNAISRLKDT-----GYQRLDLC------- 111

Query: 551 LKKEKFSSRIHLRVCL 566
                 +  +  ++ +
Sbjct: 112 KLNPSDTDAVRGQIVV 127

>3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A Length = 132

 Score = 59.3 bits (144), Expect = 1e-10
 Identities = 22/132 (16%), Positives = 50/132 (37%), Gaps = 11/132 (8%)

Query: 598 LELGILNAVGLHPMKTRDGRGTSDTYCVAKY--GHKWVRTRTLVDNLSPKYNEQYTWEVF 655
           + L +L A  L      D     D +         +   T T+ + L PK+N+ Y   V 
Sbjct: 7   IRLTVLCAKNLAKK---DFFRLPDPFAKIVVDGSGQCHSTDTVKNTLDPKWNQHYDLYV- 62

Query: 656 DPATVLTVGVFDNSQLGEKSNGNKDLKIGKVRIRISTLETGR--IYTHSYPLLVLHPTGV 713
                +T+ V+++ ++ +K        +G VR+  + +   +   Y       +      
Sbjct: 63  GKTDSITISVWNHKKIHKKQGAG---FLGCVRLLSNAISRLKDTGYQRLDLCKLNPSDTD 119

Query: 714 KKMGELHLAIRF 725
              G++ ++++ 
Sbjct: 120 AVRGQIVVSLQT 131

>2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens} Length = 157

 Score = 90.4 bits (224), Expect = 3e-21
 Identities = 26/144 (18%), Positives = 46/144 (31%), Gaps = 26/144 (18%)

Query: 435 YVRVNVVEAQDLVPT----------EKNHFPDVYVKAQIGNQVLKTKICQARTLSAVWNE 484
           Y+RV + EA  L PT          + +   D Y+   +    +     + +T    +NE
Sbjct: 30  YLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSVDQVRVGQTSTKQKTNKPTYNE 89

Query: 485 DLLFVAAEPFEDHLVLTVEDRVGPGKDEIIGRVIIPLSAIEKRADERIIHSRWFNLEKPV 544
           +  F A      HL L V      G D  +    +    + +          W +LE   
Sbjct: 90  E--FCANVTDGGHLELAVFHETPLGYDHFVANCTLQFQELLRTTGASDTFEGWVDLEP-- 145

Query: 545 AVDVDQLKKEKFSSRIHLRVCLDG 568
                         ++ + + L G
Sbjct: 146 ------------EGKVFVVITLTG 157

>2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens} Length = 157

 Score = 81.9 bits (202), Expect = 3e-18
 Identities = 26/132 (19%), Positives = 48/132 (36%), Gaps = 21/132 (15%)

Query: 272 LYVRVVKARELPAMDL----------TGSIDPFVEVKIGNYK-GITKHYEKNQNPQWHQV 320
           L VR+ +A  L                  +DP++ V +   + G T   +K   P +++ 
Sbjct: 31  LRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSVDQVRVGQTSTKQKTNKPTYNEE 90

Query: 321 FAFSRDRMQASVLEVVIKDKDLV-KDDFVGIVRFDINEVPLRVPPDSPLAPEWYRLEDKK 379
           F  +        LE+ +  +  +  D FV        E+ LR    S     W  LE   
Sbjct: 91  FCANVT--DGGHLELAVFHETPLGYDHFVANCTLQFQEL-LRTTGASDTFEGWVDLEP-- 145

Query: 380 GEKIKGELMLAV 391
               +G++ + +
Sbjct: 146 ----EGKVFVVI 153

>2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens} Length = 157

 Score = 75.0 bits (184), Expect = 8e-16
 Identities = 36/162 (22%), Positives = 55/162 (33%), Gaps = 23/162 (14%)

Query: 576 STHYSSDL--RPTAKQLWRPSIGILELGILNAVGLHPM-------KTRDGRGTSDTYCVA 626
             H+SS L  R +         G L + I  AVGL P          + G    D Y   
Sbjct: 7   HHHHSSGLVPRGSMSSGTMKFNGYLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTV 66

Query: 627 KYGHKWV-RTRTLVDNLSPKYNEQYTWEVFDPATVLTVGVFDNSQLGEKSNGNKDLKIGK 685
                 V +T T      P YNE++   V      L + VF  + LG       D  +  
Sbjct: 67  SVDQVRVGQTSTKQKTNKPTYNEEFCANV-TDGGHLELAVFHETPLG------YDHFVAN 119

Query: 686 VRIRISTLETGRIYTHSYPLLV-LHPTGVKKMGELHLAIRFS 726
             ++   L      + ++   V L P      G++ + I  +
Sbjct: 120 CTLQFQELLRTTGASDTFEGWVDLEPE-----GKVFVVITLT 156

>2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens} Length = 157

 Score = 64.2 bits (156), Expect = 4e-12
 Identities = 24/124 (19%), Positives = 41/124 (33%), Gaps = 20/124 (16%)

Query: 5   KLGVQVVGAHNLLPKDGKGSSSA----------FVELYFDGQR-FRTTIKENDLNPVWNE 53
            L V++  A  L P       S           ++ +  D  R  +T+ K+    P +NE
Sbjct: 30  YLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSVDQVRVGQTSTKQKTNKPTYNE 89

Query: 54  SFYFNISDASKLHYLTLEAYIYNNIGDTNSRSFLGKVCLTGNSFVPLSDSVVLH---YPL 110
            F  N++D   L    L  +    +G      F+    L     +  + +         L
Sbjct: 90  EFCANVTDGGHLE---LAVFHETPLG---YDHFVANCTLQFQELLRTTGASDTFEGWVDL 143

Query: 111 EKRG 114
           E  G
Sbjct: 144 EPEG 147

>1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1 Length = 136

 Score = 88.4 bits (219), Expect = 9e-21
 Identities = 20/145 (13%), Positives = 46/145 (31%), Gaps = 29/145 (20%)

Query: 435 YVRVNVVEAQDLVPTE-----------KNHFPDVYVKAQIGNQVLKTKICQARTLSAVWN 483
            +++ + EA  L PT            +    D Y+   + +  +     + +T S  W+
Sbjct: 7   LLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAWH 66

Query: 484 EDLLFVAAEPFEDHLVLTVEDRVGPGKDEIIGRVIIPLSAIEKRADERIIHSRWFNLEKP 543
           ++ +          + L V      G D+ +    I    + +          W +LE  
Sbjct: 67  DEFVTDVCNG--RKIELAVFHDAPIGYDDFVANCTIQFEELLQNGSRH--FEDWIDLEP- 121

Query: 544 VAVDVDQLKKEKFSSRIHLRVCLDG 568
                          ++++ + L G
Sbjct: 122 -------------EGKVYVIIDLSG 133

>1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1 Length = 136

 Score = 85.3 bits (211), Expect = 1e-19
 Identities = 23/133 (17%), Positives = 46/133 (34%), Gaps = 24/133 (18%)

Query: 272 LYVRVVKARELPAMDL-----------TGSIDPFVEVKIGNYKGI-TKHYEKNQNPQWHQ 319
           L +++ +A  L                T  +DP++ + + + +   T   +K  +P WH 
Sbjct: 8   LKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAWHD 67

Query: 320 VFAFSRDRMQASVLEVVIKDKDLV-KDDFVGIVRFDINEVPLRVPPDSPLAPEWYRLEDK 378
            F    D      +E+ +     +  DDFV        E+             W  LE  
Sbjct: 68  EFVT--DVCNGRKIELAVFHDAPIGYDDFVANCTIQFEELLQNGSRHFED---WIDLEP- 121

Query: 379 KGEKIKGELMLAV 391
                +G++ + +
Sbjct: 122 -----EGKVYVII 129

>1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1 Length = 136

 Score = 72.9 bits (179), Expect = 2e-15
 Identities = 27/145 (18%), Positives = 53/145 (36%), Gaps = 26/145 (17%)

Query: 596 GILELGILNAVGLHPM--------KTRDGRGTSDTYCVAKYGH-KWVRTRTLVDNLSPKY 646
           G+L++ I  AV L P           R      D Y        +  +T T     SP +
Sbjct: 6   GLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAW 65

Query: 647 NEQYTWEVFDPATVLTVGVFDNSQLGEKSNGNKDLKIGKVRIRISTL--ETGRIYTHSYP 704
           ++++  +V +    + + VF ++ +G       D  +    I+   L     R +     
Sbjct: 66  HDEFVTDVCNG-RKIELAVFHDAPIG------YDDFVANCTIQFEELLQNGSRHFEDWID 118

Query: 705 LLVLHPTGVKKMGELHLAIRFSCTS 729
           L        +  G++++ I  S +S
Sbjct: 119 L--------EPEGKVYVIIDLSGSS 135

>1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1 Length = 136

 Score = 63.3 bits (154), Expect = 5e-12
 Identities = 19/123 (15%), Positives = 38/123 (30%), Gaps = 19/123 (15%)

Query: 5   KLGVQVVGAHNLLPKD-----------GKGSSSAFVELYFDGQR-FRTTIKENDLNPVWN 52
            L +++  A +L P                    ++ L  D  R  +T  K+   +P W+
Sbjct: 7   LLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAWH 66

Query: 53  ESFYFNISDASKLHYLTLEAYIYNNIGDTNSRSFLGKVCLTGNSFVPLSDSVV-LHYPLE 111
           + F  ++ +      + L  +    IG      F+    +     +            LE
Sbjct: 67  DEFVTDVCNG---RKIELAVFHDAPIG---YDDFVANCTIQFEELLQNGSRHFEDWIDLE 120

Query: 112 KRG 114
             G
Sbjct: 121 PEG 123

>1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2 Length = 142

 Score = 83.6 bits (207), Expect = 5e-19
 Identities = 35/125 (28%), Positives = 58/125 (46%), Gaps = 23/125 (18%)

Query: 272 LYVRVVKARELPAMDLTGSIDPFVEVKI--------------GNYKGITKHYEKNQNPQW 317
           L + +++AR L   D  G  DPFV+V +                YK  TK+ +K+ NP+W
Sbjct: 20  LIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEW 79

Query: 318 HQVFAF---SRDRMQASVLEVVIKDKDLV-KDDFVGIVRFDINEVPLRVPPDSPLAPEWY 373
           +Q   +   S +++    LEV + D D    +DF+G V  D++             P WY
Sbjct: 80  NQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLDN-----TPRWY 134

Query: 374 RLEDK 378
            L+++
Sbjct: 135 PLKEQ 139

>1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2 Length = 142

 Score = 69.7 bits (171), Expect = 3e-14
 Identities = 33/124 (26%), Positives = 56/124 (45%), Gaps = 18/124 (14%)

Query: 5   KLGVQVVGAHNLLPKDGKGSSSAFVELY--------------FDGQRFRTTIKENDLNPV 50
            L + ++ A NL+P+D  G S  FV++Y                  + RT   +  LNP 
Sbjct: 19  NLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPE 78

Query: 51  WNESFYFNISDASKLHYLTLEAYIYNNIGDTNSR-SFLGKVCLTGNSFVPLSDSVVLHYP 109
           WN++  +      +L   TLE  +++   D  S   FLG+V +  +S     D+    YP
Sbjct: 79  WNQTVIYKSISMEQLMKKTLEVTVWDY--DRFSSNDFLGEVLIDLSS-TSHLDNTPRWYP 135

Query: 110 LEKR 113
           L+++
Sbjct: 136 LKEQ 139

>1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2 Length = 142

 Score = 62.0 bits (151), Expect = 2e-11
 Identities = 26/122 (21%), Positives = 55/122 (45%), Gaps = 22/122 (18%)

Query: 437 RVNVVEAQDLVPTEKNHFPDVYVK--------------AQIGNQVLKTKICQARTLSAVW 482
            +++++A++LVP + N + D +VK                      +TK  Q ++L+  W
Sbjct: 21  IIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQ-KSLNPEW 79

Query: 483 NEDLLFVAAEPFEDH---LVLTVEDRVGPGKDEIIGRVIIPLSAIEKRADERIIHSRWFN 539
           N+ +++ +    +     L +TV D      ++ +G V+I LS+     +      RW+ 
Sbjct: 80  NQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLDNT----PRWYP 135

Query: 540 LE 541
           L+
Sbjct: 136 LK 137

>1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2 Length = 142

 Score = 47.4 bits (113), Expect = 2e-06
 Identities = 27/129 (20%), Positives = 45/129 (34%), Gaps = 27/129 (20%)

Query: 596 GILELGILNAVGLHPMKTRDGRGTSDTYCV--------------AKYGHKWVRTRTLVDN 641
           G L + IL A  L P    D  G SD +                        RT+ +  +
Sbjct: 18  GNLIIHILQARNLVPR---DNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKS 74

Query: 642 LSPKYNEQYTWEVFDPAT----VLTVGVFDNSQLGEKSNGNKDLKIGKVRIRISTLETGR 697
           L+P++N+   ++           L V V+D  +         +  +G+V I +S+     
Sbjct: 75  LNPEWNQTVIYKSISMEQLMKKTLEVTVWDYDRFS------SNDFLGEVLIDLSSTSHLD 128

Query: 698 IYTHSYPLL 706
                YPL 
Sbjct: 129 NTPRWYPLK 137

>1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2 Length = 149

 Score = 83.6 bits (207), Expect = 6e-19
 Identities = 34/119 (28%), Positives = 58/119 (48%), Gaps = 13/119 (10%)

Query: 272 LYVRVVKARELPAMDLTGSIDPFVEVKI-----GNYKGITKHYEKNQNPQWHQVFAFS-R 325
           L V V  A+ L  MD  G  DP+V++K+        K  TK  + + NP+W++ F F  +
Sbjct: 33  LIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLK 92

Query: 326 DRMQASVLEVVIKDKDLV-KDDFVGIVRFDINEVPLRVPPDSPLAPEWYRLEDKKGEKI 383
           +  +   L V I D DL  ++DF+G + F I+E+             W++L  ++  + 
Sbjct: 93  ESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISELQKAGV------DGWFKLLSQEEGEY 145

>1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2 Length = 149

 Score = 69.7 bits (171), Expect = 4e-14
 Identities = 29/113 (25%), Positives = 51/113 (45%), Gaps = 12/113 (10%)

Query: 436 VRVNVVEAQDLVPTEKNHFPDVYVKAQI-----GNQVLKTKICQARTLSAVWNEDLLFVA 490
           + V V +A++LVP + N   D YVK ++          KTK  +  +L+  WNE   F  
Sbjct: 33  LIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIK-CSLNPEWNETFRFQL 91

Query: 491 AEPFEDH-LVLTVEDRVGPGKDEIIGRVIIPLSAIEKRADERIIHSRWFNLEK 542
            E  +D  L + + D     +++ +G +   +S ++K   +      WF L  
Sbjct: 92  KESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISELQKAGVD-----GWFKLLS 139

>1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2 Length = 149

 Score = 69.7 bits (171), Expect = 4e-14
 Identities = 29/98 (29%), Positives = 47/98 (47%), Gaps = 10/98 (10%)

Query: 5   KLGVQVVGAHNLLPKDGKGSSSAFVELYF-----DGQRFRTTIKENDLNPVWNESFYFNI 59
            L V V  A NL+P D  G S  +V+L          + +T   +  LNP WNE+F F +
Sbjct: 32  VLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQL 91

Query: 60  SDASKLHYLTLEAYIYNNIGDTNSRS-FLGKVCLTGNS 96
            ++ K   L++E + +    D  SR+ F+G +    + 
Sbjct: 92  KESDKDRRLSVEIWDW----DLTSRNDFMGSLSFGISE 125

>1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2 Length = 149

 Score = 55.5 bits (134), Expect = 4e-09
 Identities = 26/118 (22%), Positives = 51/118 (43%), Gaps = 17/118 (14%)

Query: 596 GILELGILNAVGLHPMKTRDGRGTSDTYCV-----AKYGHKWVRTRTLVDNLSPKYNEQY 650
            +L + + +A  L PM   D  G SD Y               +T+T+  +L+P++NE +
Sbjct: 31  EVLIVVVRDAKNLVPM---DPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETF 87

Query: 651 TWEVF--DPATVLTVGVFDNSQLGEKSNGNKDLKIGKVRIRISTLETGRIYTHSYPLL 706
            +++   D    L+V ++D           ++  +G +   IS L+   +    + LL
Sbjct: 88  RFQLKESDKDRRLSVEIWDWDLTS------RNDFMGSLSFGISELQKAGV-DGWFKLL 138

>1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 141

 Score = 80.1 bits (198), Expect = 8e-18
 Identities = 28/125 (22%), Positives = 55/125 (44%), Gaps = 17/125 (13%)

Query: 272 LYVRVVKARELPAMDLTGSIDPFVEVKI-----GNYKGITKHYEKNQNPQWHQVFAF--- 323
           L V ++ A++LP+ +     +P+V++          K  TK  +K   P+W+Q F +   
Sbjct: 23  LIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPV 82

Query: 324 SRDRMQASVLEVVIKDKDLV---KDDFVGIVRFDINEVPLRVPPDSPLAPEWYRLEDKKG 380
            R   +  +LE+ + D+  V   + +F+G +  ++    L         P WY+L+    
Sbjct: 83  HRREFRERMLEITLWDQARVREEESEFLGEILIELETALLDD------EPHWYKLQTHDS 136

Query: 381 EKIKG 385
               G
Sbjct: 137 GPSSG 141

>1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 141

 Score = 71.6 bits (176), Expect = 8e-15
 Identities = 22/94 (23%), Positives = 45/94 (47%), Gaps = 6/94 (6%)

Query: 5   KLGVQVVGAHNLLPKDGKGSSSAFVELYF-----DGQRFRTTIKENDLNPVWNESFYFNI 59
           +L V ++GA +L  ++     + +V++YF     D  + RT   +  L P WN++F ++ 
Sbjct: 22  QLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSP 81

Query: 60  SDASKLHYLTLEAYIYNNIGDTNSRS-FLGKVCL 92
               +     LE  +++        S FLG++ +
Sbjct: 82  VHRREFRERMLEITLWDQARVREEESEFLGEILI 115

>1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 141

 Score = 67.7 bits (166), Expect = 2e-13
 Identities = 26/128 (20%), Positives = 49/128 (38%), Gaps = 16/128 (12%)

Query: 426 KVYHSPRLWYVRVNVVEAQDLVPTEKNHFPDVYVKAQI-----GNQVLKTKICQARTLSA 480
           K++       + V ++ A+DL   E     + YVK             +TK  + +TL  
Sbjct: 13  KLWFDKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVK-KTLEP 71

Query: 481 VWNEDLLFVAAEPFEDH---LVLTV--EDRVGPGKDEIIGRVIIPLSAIEKRADERIIHS 535
            WN+  ++      E     L +T+  + RV   + E +G ++I L       +      
Sbjct: 72  KWNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETALLDDEP----- 126

Query: 536 RWFNLEKP 543
            W+ L+  
Sbjct: 127 HWYKLQTH 134

>1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 141

 Score = 46.2 bits (110), Expect = 6e-06
 Identities = 23/121 (19%), Positives = 47/121 (38%), Gaps = 19/121 (15%)

Query: 596 GILELGILNAVGLHPMKTRDGRGTSDTYCV------AKYGHKWVRTRTLVDNLSPKYNEQ 649
             L + IL A  L      +     + Y            +K  RT+T+   L PK+N+ 
Sbjct: 21  HQLIVTILGAKDLPSR---EDGRPRNPYVKIYFLPDRSDKNKR-RTKTVKKTLEPKWNQT 76

Query: 650 YTWEVFDPAT----VLTVGVFDNSQLGEKSNGNKDLKIGKVRIRISTLETGRIYTHSYPL 705
           + +           +L + ++D +++ E+ +   +  +G++ I + T        H Y L
Sbjct: 77  FIYSPVHRREFRERMLEITLWDQARVREEES---EF-LGEILIELETALLDDE-PHWYKL 131

Query: 706 L 706
            
Sbjct: 132 Q 132

>2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 141

 Score = 80.1 bits (198), Expect = 9e-18
 Identities = 35/118 (29%), Positives = 61/118 (51%), Gaps = 12/118 (10%)

Query: 272 LYVRVVKARELPAMDLTGSIDPFVEVKI---GNYKGITKHYEKNQNPQWHQVFAF---SR 325
           L V+++KA+ELPA D +G+ DPFV++ +     +K  TK   KN NP W++ F F     
Sbjct: 28  LTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPY 87

Query: 326 DRMQASVLEVVIKDKDLV-KDDFVGIVRFDINEVPLRVPPDSPLAPEWYRLEDKKGEK 382
           +++   +L + + D D   ++D +G V   +N+V L     + +   W  L+      
Sbjct: 88  EKVVQRILYLQVLDYDRFSRNDPIGEVSIPLNKVDL-----TQMQTFWKDLKPSGPSS 140

>2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 141

 Score = 77.4 bits (191), Expect = 7e-17
 Identities = 32/117 (27%), Positives = 52/117 (44%), Gaps = 7/117 (5%)

Query: 2   RNLKLGVQVVGAHNLLPKDGKGSSSAFVELYF---DGQRFRTTIKENDLNPVWNESFYFN 58
           +   L V+++ A  L  KD  G+S  FV++Y       +  T +K  +LNP WNE+F F 
Sbjct: 24  QESTLTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFE 83

Query: 59  ISDASKLHYLTLEAYIYNNIGDTNSR-SFLGKVCLTGNSFVPLSDSVVLHYPLEKRG 114
                K+    L   + +   D  SR   +G+V +   + V L+        L+  G
Sbjct: 84  GFPYEKVVQRILYLQVLDY--DRFSRNDPIGEVSI-PLNKVDLTQMQTFWKDLKPSG 137

>2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 141

 Score = 67.7 bits (166), Expect = 1e-13
 Identities = 29/115 (25%), Positives = 54/115 (46%), Gaps = 15/115 (13%)

Query: 437 RVNVVEAQDLVPTEKNHFPDVYVKAQI---GNQVLKTKICQARTLSAVWNEDLLF---VA 490
            V +++AQ+L   + +   D +VK  +       L+TK+ + + L+  WNE  LF     
Sbjct: 29  TVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKR-KNLNPHWNETFLFEGFPY 87

Query: 491 AEPFEDHLVLTV--EDRVGPGKDEIIGRVIIPLSAIEKRADERIIHSRWFNLEKP 543
            +  +  L L V   DR    +++ IG V IPL+ ++    +    + W +L+  
Sbjct: 88  EKVVQRILYLQVLDYDRF--SRNDPIGEVSIPLNKVDLTQMQ----TFWKDLKPS 136

>2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 141

 Score = 53.1 bits (128), Expect = 2e-08
 Identities = 27/117 (23%), Positives = 47/117 (40%), Gaps = 16/117 (13%)

Query: 596 GILELGILNAVGLHPMKTRDGRGTSDTYCVAKY---GHKWVRTRTLVDNLSPKYNEQYTW 652
             L + I+ A  L      D  GTSD +            + T+    NL+P +NE + +
Sbjct: 26  STLTVKIMKAQELPAK---DFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLF 82

Query: 653 EVFDPATV----LTVGVFDNSQLGEKSNGNKDLKIGKVRIRISTLETGRIYTHSYPL 705
           E F    V    L + V D  +        ++  IG+V I ++ ++  ++ T    L
Sbjct: 83  EGFPYEKVVQRILYLQVLDYDRFS------RNDPIGEVSIPLNKVDLTQMQTFWKDL 133

>1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2 Length = 152

 Score = 80.2 bits (198), Expect = 1e-17
 Identities = 32/114 (28%), Positives = 53/114 (46%), Gaps = 11/114 (9%)

Query: 272 LYVRVVKARELPAMDLTGSIDPFVEVKIGNYKGI---TKHYEKNQNPQWHQVFAF--SRD 326
           L V +++A ELPA+D+ G+ DP+V+V +   K     TK + K  NP +++ F F     
Sbjct: 44  LLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYS 103

Query: 327 RMQASVLEVVIKDKDLV-KDDFVGIVRFDINEVPLRVPPDSPLAPEWYRLEDKK 379
            +    L + + D D   K D +G  +  +N V            EW  L+  +
Sbjct: 104 ELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHV-----TEEWRDLQSAE 152

>1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2 Length = 152

 Score = 77.1 bits (190), Expect = 1e-16
 Identities = 28/111 (25%), Positives = 50/111 (45%), Gaps = 8/111 (7%)

Query: 5   KLGVQVVGAHNLLPKDGKGSSSAFVELYF---DGQRFRTTIKENDLNPVWNESFYFNISD 61
           +L V ++ A  L   D  G+S  +V+++      ++F T +    LNPV+NE F F +  
Sbjct: 43  QLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPY 102

Query: 62  ASKLHYLTLEAYIYNNIGDTNSR-SFLGKVCLTGNSFVPLSDSVVLHYPLE 111
            S+L   TL   +Y+   D  S+   +G+  +   + V           L+
Sbjct: 103 -SELGGKTLVMAVYDF--DRFSKHDIIGEFKV-PMNTVDFGHVTEEWRDLQ 149

>1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2 Length = 152

 Score = 65.1 bits (159), Expect = 2e-12
 Identities = 27/110 (24%), Positives = 48/110 (43%), Gaps = 10/110 (9%)

Query: 437 RVNVVEAQDLVPTEKNHFPDVYVKAQI---GNQVLKTKICQARTLSAVWNEDLLF-VAAE 492
            V +++A +L   +     D YVK  +     +  +TK+   +TL+ V+NE   F V   
Sbjct: 45  LVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKV-HRKTLNPVFNEQFTFKVPYS 103

Query: 493 PFEDH-LVLTVEDRVGPGKDEIIGRVIIPLSAIEKRADERIIHSRWFNLE 541
                 LV+ V D     K +IIG   +P++ ++           W +L+
Sbjct: 104 ELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDF--GHVTEE--WRDLQ 149

>1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2 Length = 152

 Score = 53.2 bits (128), Expect = 2e-08
 Identities = 29/117 (24%), Positives = 49/117 (41%), Gaps = 15/117 (12%)

Query: 596 GILELGILNAVGLHPMKTRDGRGTSDTYCVAK---YGHKWVRTRTLVDNLSPKYNEQYTW 652
             L +GI+ A  L  +   D  GTSD Y          K   T+     L+P +NEQ+T+
Sbjct: 42  NQLLVGIIQAAELPAL---DMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTF 98

Query: 653 EVFD---PATVLTVGVFDNSQLGEKSNGNKDLKIGKVRIRISTLETGRIYTHSYPLL 706
           +V         L + V+D  +        K   IG+ ++ ++T++ G +      L 
Sbjct: 99  KVPYSELGGKTLVMAVYDFDRFS------KHDIIGEFKVPMNTVDFGHVTEEWRDLQ 149

>2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2 Length = 129

 Score = 78.5 bits (194), Expect = 2e-17
 Identities = 27/116 (23%), Positives = 54/116 (46%), Gaps = 17/116 (14%)

Query: 272 LYVRVVKARELPAMDLTGSIDPFVEVKI-----GNYKGITKHYEKNQNPQWHQVFAF--- 323
           L V ++ A++LP+ +     +P+V++          K  TK  +K   P+W+Q F +   
Sbjct: 20  LIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPV 79

Query: 324 SRDRMQASVLEVVIKDKDLV---KDDFVGIVRFDINEVPLRVPPDSPLAPEWYRLE 376
            R   +  +LE+ + D+  V   + +F+G +  ++    L         P WY+L+
Sbjct: 80  HRREFRERMLEITLWDQARVREEESEFLGEILIELETALLD------DEPHWYKLQ 129

>2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2 Length = 129

 Score = 71.2 bits (175), Expect = 8e-15
 Identities = 22/94 (23%), Positives = 45/94 (47%), Gaps = 6/94 (6%)

Query: 5   KLGVQVVGAHNLLPKDGKGSSSAFVELYF-----DGQRFRTTIKENDLNPVWNESFYFNI 59
           +L V ++GA +L  ++     + +V++YF     D  + RT   +  L P WN++F ++ 
Sbjct: 19  QLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSP 78

Query: 60  SDASKLHYLTLEAYIYNNIGDTNSRS-FLGKVCL 92
               +     LE  +++        S FLG++ +
Sbjct: 79  VHRREFRERMLEITLWDQARVREEESEFLGEILI 112

>2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2 Length = 129

 Score = 67.7 bits (166), Expect = 1e-13
 Identities = 27/125 (21%), Positives = 48/125 (38%), Gaps = 22/125 (17%)

Query: 433 LWYV------RVNVVEAQDLVPTEKNHFPDVYVKAQI-----GNQVLKTKICQARTLSAV 481
           LW+        V ++ A+DL   E     + YVK             +TK  + +TL   
Sbjct: 11  LWFDKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVK-KTLEPK 69

Query: 482 WNEDLLFVAAEPFEDH---LVLTV--EDRVGPGKDEIIGRVIIPLSAIEKRADERIIHSR 536
           WN+  ++      E     L +T+  + RV   + E +G ++I L       +       
Sbjct: 70  WNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETALLDDEP-----H 124

Query: 537 WFNLE 541
           W+ L+
Sbjct: 125 WYKLQ 129

>2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2 Length = 129

 Score = 44.6 bits (106), Expect = 1e-05
 Identities = 23/120 (19%), Positives = 47/120 (39%), Gaps = 19/120 (15%)

Query: 596 GILELGILNAVGLHPMKTRDGRGTSDTYCV------AKYGHKWVRTRTLVDNLSPKYNEQ 649
             L + IL A  L      +     + Y            +K  RT+T+   L PK+N+ 
Sbjct: 18  HQLIVTILGAKDLPSR---EDGRPRNPYVKIYFLPDRSDKNKR-RTKTVKKTLEPKWNQT 73

Query: 650 YTWEVFDPAT----VLTVGVFDNSQLGEKSNGNKDLKIGKVRIRISTLETGRIYTHSYPL 705
           + +           +L + ++D +++ E+ +   +  +G++ I + T        H Y L
Sbjct: 74  FIYSPVHRREFRERMLEITLWDQARVREEES---EF-LGEILIELETALLDDE-PHWYKL 128

>3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A* Length = 143

 Score = 78.6 bits (194), Expect = 3e-17
 Identities = 32/111 (28%), Positives = 52/111 (46%), Gaps = 11/111 (9%)

Query: 272 LYVRVVKARELPAMDLTGSIDPFVEVKIGNYKGI---TKHYEKNQNPQWHQVFAF--SRD 326
           L V +++A ELPA+D+ G+ DP+V+V +   K     TK + K  NP +++ F F     
Sbjct: 36  LLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYS 95

Query: 327 RMQASVLEVVIKDKDLV-KDDFVGIVRFDINEVPLRVPPDSPLAPEWYRLE 376
            +    L + + D D   K D +G  +  +N V            EW  L+
Sbjct: 96  ELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHV-----TEEWRDLQ 141

>3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A* Length = 143

 Score = 76.2 bits (188), Expect = 2e-16
 Identities = 28/111 (25%), Positives = 50/111 (45%), Gaps = 8/111 (7%)

Query: 5   KLGVQVVGAHNLLPKDGKGSSSAFVELYF---DGQRFRTTIKENDLNPVWNESFYFNISD 61
           +L V ++ A  L   D  G+S  +V+++      ++F T +    LNPV+NE F F +  
Sbjct: 35  QLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPY 94

Query: 62  ASKLHYLTLEAYIYNNIGDTNSR-SFLGKVCLTGNSFVPLSDSVVLHYPLE 111
            S+L   TL   +Y+   D  S+   +G+  +   + V           L+
Sbjct: 95  -SELGGKTLVMAVYDF--DRFSKHDIIGEFKV-PMNTVDFGHVTEEWRDLQ 141

>3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A* Length = 143

 Score = 65.8 bits (161), Expect = 8e-13
 Identities = 29/140 (20%), Positives = 58/140 (41%), Gaps = 10/140 (7%)

Query: 407 SDAATPVDSTPAITAVIRSKVYHSPRLWYVRVNVVEAQDLVPTEKNHFPDVYVKAQI--- 463
                 +DS       ++  + +  +   + V +++A +L   +     D YVK  +   
Sbjct: 7   GGGGGILDSMVEKLGKLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPD 66

Query: 464 GNQVLKTKICQARTLSAVWNEDLLFV--AAEPFEDHLVLTVEDRVGPGKDEIIGRVIIPL 521
             +  +TK+   +TL+ V+NE   F    +E     LV+ V D     K +IIG   +P+
Sbjct: 67  KKKKFETKV-HRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPM 125

Query: 522 SAIEKRADERIIHSRWFNLE 541
           + ++           W +L+
Sbjct: 126 NTVDF--GHVTEE--WRDLQ 141

>3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A* Length = 143

 Score = 54.3 bits (131), Expect = 8e-09
 Identities = 29/117 (24%), Positives = 49/117 (41%), Gaps = 15/117 (12%)

Query: 596 GILELGILNAVGLHPMKTRDGRGTSDTYCVAK---YGHKWVRTRTLVDNLSPKYNEQYTW 652
             L +GI+ A  L  +   D  GTSD Y          K   T+     L+P +NEQ+T+
Sbjct: 34  NQLLVGIIQAAELPAL---DMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTF 90

Query: 653 EVFD---PATVLTVGVFDNSQLGEKSNGNKDLKIGKVRIRISTLETGRIYTHSYPLL 706
           +V         L + V+D  +        K   IG+ ++ ++T++ G +      L 
Sbjct: 91  KVPYSELGGKTLVMAVYDFDRFS------KHDIIGEFKVPMNTVDFGHVTEEWRDLQ 141

>2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A Length = 142

 Score = 77.8 bits (192), Expect = 5e-17
 Identities = 26/114 (22%), Positives = 51/114 (44%), Gaps = 14/114 (12%)

Query: 272 LYVRVVKARELPAMDLTGSIDPFVEVKI-----GNYKGITKHYEKNQNPQWHQVFAF--- 323
           L   +++A+ L  MD  G  DP+V++ +      + K  TK     +NP W++   +   
Sbjct: 31  LQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQYHGI 90

Query: 324 SRDRMQASVLEVVIKDKDLV-KDDFVGIVRFDINEVPLRVPPDSPLAPEWYRLE 376
           + + MQ   L + + D+D    ++F+G  RF + ++      +         LE
Sbjct: 91  TEEDMQRKTLRISVCDEDKFGHNEFIGETRFSLKKLKANQRKN-----FNICLE 139

>2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A Length = 142

 Score = 71.2 bits (175), Expect = 1e-14
 Identities = 25/116 (21%), Positives = 46/116 (39%), Gaps = 9/116 (7%)

Query: 3   NLKLGVQVVGAHNLLPKDGKGSSSAFVELYF-----DGQRFRTTIKENDLNPVWNESFYF 57
           N  L   ++ A  L P D  G +  +V+L+         + RT    N  NPVWNE+  +
Sbjct: 28  NSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQY 87

Query: 58  NISDASKLHYLTLEAYIYNNIGDTNSRS-FLGKVCLTGNSFVPLSDSVVLHYPLEK 112
           +      +   TL   + +   D    + F+G+   +    +  +     +  LE+
Sbjct: 88  HGITEEDMQRKTLRISVCDE--DKFGHNEFIGETRFSLKK-LKANQRKNFNICLER 140

>2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A Length = 142

 Score = 65.8 bits (161), Expect = 8e-13
 Identities = 27/127 (21%), Positives = 50/127 (39%), Gaps = 13/127 (10%)

Query: 426 KVYHSPRLWYVRVNVVEAQDLVPTEKNHFPDVYVKAQI-----GNQVLKTKICQARTLSA 480
            + +      ++  ++ A+ L P + N   D YVK  +      +  L+TK  +  T + 
Sbjct: 21  SLLYDQDNSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLR-NTRNP 79

Query: 481 VWNEDLLFVAAEPFEDH---LVLTVEDRVGPGKDEIIGRVIIPLSAIEKRADERIIHSRW 537
           VWNE L +      +     L ++V D    G +E IG     L  ++         +  
Sbjct: 80  VWNETLQYHGITEEDMQRKTLRISVCDEDKFGHNEFIGETRFSLKKLKANQ----RKNFN 135

Query: 538 FNLEKPV 544
             LE+ +
Sbjct: 136 ICLERVI 142

>2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A Length = 142

 Score = 51.2 bits (123), Expect = 9e-08
 Identities = 27/119 (22%), Positives = 44/119 (36%), Gaps = 18/119 (15%)

Query: 596 GILELGILNAVGLHPMKTRDGRGTSDTYCVA-----KYGHKWVRTRTLVDNLSPKYNEQY 650
             L+  I+ A GL PM   D  G +D Y              +RT+TL +  +P +NE  
Sbjct: 29  SNLQCTIIRAKGLKPM---DSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETL 85

Query: 651 TWEVFDPA----TVLTVGVFDNSQLGEKSNGNKDLKIGKVRIRISTLETGRIYTHSYPL 705
            +            L + V D  + G       +  IG+ R  +  L+  +    +  L
Sbjct: 86  QYHGITEEDMQRKTLRISVCDEDKFG------HNEFIGETRFSLKKLKANQRKNFNICL 138

>2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens} Length = 155

 Score = 75.9 bits (187), Expect = 3e-16
 Identities = 16/113 (14%), Positives = 37/113 (32%), Gaps = 13/113 (11%)

Query: 272 LYVRVVKARELPAMDLTGSIDPFVEVKI------GNYKGITKHYEKNQNPQWHQVFAF-- 323
             + +++   L A+         + V +            T+  + +    +++VF    
Sbjct: 45  FAILIIQLSNLSALLQQQDQKVNIRVAVLPCSESTTCLFRTRPLDASDTLVFNEVFWVSM 104

Query: 324 SRDRMQASVLEVVIKDKD-LVKDDFVGIVRFDINEVPLRVPPDSPLAPEWYRL 375
           S   +    L V +   D    ++ +G  +  + EV          +  WY L
Sbjct: 105 SYPALHQKTLRVDVCTTDRSHLEECLGGAQISLAEVCR----SGERSTRWYNL 153

>2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens} Length = 155

 Score = 72.8 bits (179), Expect = 4e-15
 Identities = 20/116 (17%), Positives = 38/116 (32%), Gaps = 10/116 (8%)

Query: 2   RNLKLGVQVVGAHNLLPKDGKGSSSAFVELYF------DGQRFRTTIKENDLNPVWNESF 55
           +N +  + ++   NL     +      + +            FRT   +     V+NE F
Sbjct: 41  KNKQFAILIIQLSNLSALLQQQDQKVNIRVAVLPCSESTTCLFRTRPLDASDTLVFNEVF 100

Query: 56  YFNISDASKLHYLTLEAYIYNNIGDTNSR-SFLGKVCLTGNSFVPLSDSVVLHYPL 110
           + ++S    LH  TL   +     D +     LG   ++        +     Y L
Sbjct: 101 WVSMSY-PALHQKTLRVDVCTT--DRSHLEECLGGAQISLAEVCRSGERSTRWYNL 153

>2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens} Length = 155

 Score = 63.2 bits (154), Expect = 1e-11
 Identities = 16/111 (14%), Positives = 42/111 (37%), Gaps = 12/111 (10%)

Query: 438 VNVVEAQDLVPTEKNHFPDVYVKAQI------GNQVLKTKICQARTLSAVWNEDLLF-VA 490
           + +++  +L    +     V ++  +         + +T+     + + V+NE     ++
Sbjct: 47  ILIIQLSNLSALLQQQDQKVNIRVAVLPCSESTTCLFRTRPLD-ASDTLVFNEVFWVSMS 105

Query: 491 AEPFEDH-LVLTVEDRVGPGKDEIIGRVIIPLSAIEKRADERIIHSRWFNL 540
                   L + V        +E +G   I L+ + +  +     +RW+NL
Sbjct: 106 YPALHQKTLRVDVCTTDRSHLEECLGGAQISLAEVCRSGER---STRWYNL 153

>2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens} Length = 155

 Score = 46.6 bits (111), Expect = 4e-06
 Identities = 21/122 (17%), Positives = 40/122 (32%), Gaps = 21/122 (17%)

Query: 596 GILELGILNAVGLHPMKTRDGRGTSDTY-------CVAKYGHKWVRTRTLVDNLSPKYNE 648
               + I+    L  +     +             C       + RTR L  + +  +NE
Sbjct: 43  KQFAILIIQLSNLSAL---LQQQDQKVNIRVAVLPCSESTTCLF-RTRPLDASDTLVFNE 98

Query: 649 QYTWEVFDPA---TVLTVGVFDNSQLGEKSNGNKDLKIGKVRIRISTLE-TGRIYTHSYP 704
            +   +  PA     L V V    +        ++  +G  +I ++ +  +G   T  Y 
Sbjct: 99  VFWVSMSYPALHQKTLRVDVCTTDRSHL-----EEC-LGGAQISLAEVCRSGERSTRWYN 152

Query: 705 LL 706
           LL
Sbjct: 153 LL 154

>3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens} Length = 148

 Score = 73.5 bits (181), Expect = 2e-15
 Identities = 19/126 (15%), Positives = 38/126 (30%), Gaps = 18/126 (14%)

Query: 272 LYVRVVKARELPAMDLT-GSIDPFVEV-------KIGNYKGITKHYEKNQNPQWHQVFAF 323
           L V V +  +L   D      +P+V+        + G  K  T       NP + +   +
Sbjct: 25  LVVHVKECHQLAYADEAKKRSNPYVKTYLLPDKSRQGKRK--TSIKRDTVNPLYDETLRY 82

Query: 324 --SRDRMQASVLEVVIKDKDLV-KDDFVGIVRFDINEVPLRVPPDSPLAPEWYRLEDKKG 380
                 +    L+  +       ++ F+G     ++   L              L  K  
Sbjct: 83  EIPESLLAQRTLQFSVWHHGRFGRNTFLGEAEIQMDSWKLDKK-----LDHCLPLHGKIS 137

Query: 381 EKIKGE 386
            + +G 
Sbjct: 138 AESEGH 143

>3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens} Length = 148

 Score = 67.8 bits (166), Expect = 2e-13
 Identities = 30/119 (25%), Positives = 53/119 (44%), Gaps = 11/119 (9%)

Query: 2   RNLKLGVQVVGAHNLLPKD-GKGSSSAFVELYF--DGQR---FRTTIKENDLNPVWNESF 55
           +   L V V   H L   D  K  S+ +V+ Y   D  R    +T+IK + +NP+++E+ 
Sbjct: 21  QTQSLVVHVKECHQLAYADEAKKRSNPYVKTYLLPDKSRQGKRKTSIKRDTVNPLYDETL 80

Query: 56  YFNISDASKLHYLTLEAYIYNNIGDTNSR-SFLGKVCLTGNSFVPLSDSVVLHYPLEKR 113
            + I   S L   TL+  ++++      R +FLG+  +       L   +    PL  +
Sbjct: 81  RYEIP-ESLLAQRTLQFSVWHH--GRFGRNTFLGEAEI-QMDSWKLDKKLDHCLPLHGK 135

>3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens} Length = 148

 Score = 54.7 bits (132), Expect = 6e-09
 Identities = 22/121 (18%), Positives = 47/121 (38%), Gaps = 13/121 (10%)

Query: 438 VNVVEAQDLVP-TEKNHFPDVYVKAQI-----GNQVLKTKICQARTLSAVWNEDLLF-VA 490
           V+V E   L    E     + YVK  +          KT I +  T++ +++E L + + 
Sbjct: 27  VHVKECHQLAYADEAKKRSNPYVKTYLLPDKSRQGKRKTSIKR-DTVNPLYDETLRYEIP 85

Query: 491 AEPFEDH-LVLTVEDRVGPGKDEIIGRVIIPLSAIEKRADERIIHSRWFNLEKPVAVDVD 549
                   L  +V      G++  +G   I + + +   D+++ H     L   ++ + +
Sbjct: 86  ESLLAQRTLQFSVWHHGRFGRNTFLGEAEIQMDSWKL--DKKLDH--CLPLHGKISAESE 141

Query: 550 Q 550
            
Sbjct: 142 G 142

>3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens} Length = 148

 Score = 46.2 bits (110), Expect = 5e-06
 Identities = 21/134 (15%), Positives = 45/134 (33%), Gaps = 20/134 (14%)

Query: 596 GILELGILNAVGLHPMKTRDGRGTSDTYCV------AKYGHKWVRTRTLVDNLSPKYNEQ 649
             L + +     L      + +  S+ Y             K  +T    D ++P Y+E 
Sbjct: 23  QSLVVHVKECHQLAYAD--EAKKRSNPYVKTYLLPDKSRQGK-RKTSIKRDTVNPLYDET 79

Query: 650 YTWEVFD---PATVLTVGVFDNSQLGEKSNGNKDLKIGKVRIRISTLETGRIYTHSYPLL 706
             +E+ +       L   V+ + + G  +       +G+  I++ + +  +   H  PL 
Sbjct: 80  LRYEIPESLLAQRTLQFSVWHHGRFGRNTF------LGEAEIQMDSWKLDKKLDHCLPL- 132

Query: 707 VLHPTGVKKMGELH 720
                  +  G  H
Sbjct: 133 -HGKISAESEGHHH 145

>2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus} Length = 134

 Score = 72.7 bits (179), Expect = 3e-15
 Identities = 22/118 (18%), Positives = 52/118 (44%), Gaps = 19/118 (16%)

Query: 272 LYVRVVKARELPAMDLTGSIDPFVEV-------KIGNYKGITKHYEKNQNPQWHQVFAF- 323
           L++ V+  ++L   D     +P+V+        K    K  TK   K +NP ++++  + 
Sbjct: 22  LFIMVMHIKDLVTEDGADP-NPYVKTYLLPDTHKTSKRK--TKISRKTRNPTFNEMLVYS 78

Query: 324 --SRDRMQASVLEVVIKDKD-LVKDDFVGIVRFDINEVPLRVPPDSPLAPEWYRLEDK 378
             S++ ++   L++ +   + L ++ F+G +   + +  L          +WY+L   
Sbjct: 79  GYSKETLRQRELQLSVLSAESLRENFFLGGITLPLKDFNLSKE-----TVKWYQLTAA 131

>2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus} Length = 134

 Score = 68.1 bits (167), Expect = 1e-13
 Identities = 24/113 (21%), Positives = 43/113 (38%), Gaps = 10/113 (8%)

Query: 5   KLGVQVVGAHNLLPKDGKGSSSAFVELYF-----DGQRFRTTIKENDLNPVWNESFYFNI 59
            L + V+   +L+ +DG    + +V+ Y         + +T I     NP +NE   ++ 
Sbjct: 21  TLFIMVMHIKDLVTEDG-ADPNPYVKTYLLPDTHKTSKRKTKISRKTRNPTFNEMLVYSG 79

Query: 60  SDASKLHYLTLEAYIYNNIGDTNSR-SFLGKVCLTGNSFVPLSDSVVLHYPLE 111
                L    L+  + +   ++     FLG + L       LS   V  Y L 
Sbjct: 80  YSKETLRQRELQLSVLSA--ESLRENFFLGGITL-PLKDFNLSKETVKWYQLT 129

>2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus} Length = 134

 Score = 54.2 bits (131), Expect = 6e-09
 Identities = 26/121 (21%), Positives = 49/121 (40%), Gaps = 18/121 (14%)

Query: 433 LWYVR----VNVVEAQDLVPTEKNHFPDVYVKAQI-----GNQVLKTKICQARTLSAVWN 483
           + Y      + V+  +DLV  +    P+ YVK  +          KTKI + +T +  +N
Sbjct: 15  VSYRNGTLFIMVMHIKDLVTEDGAD-PNPYVKTYLLPDTHKTSKRKTKISR-KTRNPTFN 72

Query: 484 EDLLF--VAAEPFEDH-LVLTVEDRVGPGKDEIIGRVIIPLSAIEKRADERIIHSRWFNL 540
           E L++   + E      L L+V       ++  +G + +PL        +  +   W+ L
Sbjct: 73  EMLVYSGYSKETLRQRELQLSVLSAESLRENFFLGGITLPLKDFNL--SKETVK--WYQL 128

Query: 541 E 541
            
Sbjct: 129 T 129

>2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus} Length = 134

 Score = 45.0 bits (107), Expect = 1e-05
 Identities = 19/121 (15%), Positives = 36/121 (29%), Gaps = 21/121 (17%)

Query: 596 GILELGILNAVGLHPMKTRDGRGTSDTYCV------AKYGHKWVRTRTLVDNLSPKYNEQ 649
           G L + +++   L      DG    + Y             K  +T+      +P +NE 
Sbjct: 20  GTLFIMVMHIKDLVTE---DG-ADPNPYVKTYLLPDTHKTSKR-KTKISRKTRNPTFNEM 74

Query: 650 YTWEVFDPAT----VLTVGVFDNSQLGEKSNGNKDLKIGKVRIRISTLETGRIYTHSYPL 705
             +  +   T     L + V     L E         +G + + +      +     Y L
Sbjct: 75  LVYSGYSKETLRQRELQLSVLSAESLRE-----NFF-LGGITLPLKDFNLSKETVKWYQL 128

Query: 706 L 706
            
Sbjct: 129 T 129

>1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 138

 Score = 71.6 bits (176), Expect = 7e-15
 Identities = 26/97 (26%), Positives = 44/97 (45%), Gaps = 8/97 (8%)

Query: 272 LYVRVVKARELPAMDLTG-SIDPFVEVKIGNYKGI---TKHYEKNQNPQWHQVFAF---S 324
             V + +AR LPAMD    + DP++++ I   K     T+   K  +P + + F F    
Sbjct: 24  FVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFYGIP 83

Query: 325 RDRMQASVLEVVIKDKDLV-KDDFVGIVRFDINEVPL 360
             ++Q   L   I   D   +DD +G V   ++ + L
Sbjct: 84  YTQIQELALHFTILSFDRFSRDDIIGEVLIPLSGIEL 120

>1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 138

 Score = 69.7 bits (171), Expect = 3e-14
 Identities = 23/111 (20%), Positives = 47/111 (42%), Gaps = 8/111 (7%)

Query: 2   RNLKLGVQVVGAHNLLPKDGKG-SSSAFVELYF---DGQRFRTTIKENDLNPVWNESFYF 57
                 V +  A  L   D +  +S  ++++        + +T +    L+P ++E+F F
Sbjct: 20  ERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTF 79

Query: 58  NISDASKLHYLTLEAYIYNNIGDTNSRS-FLGKVCLTGNSFVPLSDSVVLH 107
                +++  L L   I +   D  SR   +G+V +   S + LS+  +L 
Sbjct: 80  YGIPYTQIQELALHFTILSF--DRFSRDDIIGEVLI-PLSGIELSEGKMLM 127

>1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 138

 Score = 57.7 bits (140), Expect = 4e-10
 Identities = 28/114 (24%), Positives = 50/114 (43%), Gaps = 11/114 (9%)

Query: 437 RVNVVEAQDLVPTEKN-HFPDVYVKAQI---GNQVLKTKICQARTLSAVWNEDLLFVAAE 492
            VN+ EA+ L   ++     D Y+K  I       +KT++   +TL   ++E   F    
Sbjct: 25  VVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRV-LRKTLDPAFDETFTFYGIP 83

Query: 493 PFEDH---LVLTVEDRVGPGKDEIIGRVIIPLSAIEKRADERIIHSRWFNLEKP 543
             +     L  T+       +D+IIG V+IPLS IE  ++ +++      +   
Sbjct: 84  YTQIQELALHFTILSFDRFSRDDIIGEVLIPLSGIEL-SEGKMLM--NREIISG 134

>1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 138

 Score = 41.9 bits (99), Expect = 1e-04
 Identities = 25/106 (23%), Positives = 39/106 (36%), Gaps = 15/106 (14%)

Query: 596 GILELGILNAVGLHPMKTRDGRGTSDTYCVAK---YGHKWVRTRTLVDNLSPKYNEQYTW 652
               + I  A GL  M   +   TSD Y            V+TR L   L P ++E +T+
Sbjct: 22  KAFVVNIKEARGLPAM--DEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTF 79

Query: 653 EVFDPATV----LTVGVFDNSQLGEKSNGNKDLKIGKVRIRISTLE 694
                  +    L   +    +        +D  IG+V I +S +E
Sbjct: 80  YGIPYTQIQELALHFTILSFDRFS------RDDIIGEVLIPLSGIE 119

>2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A Length = 166

 Score = 72.0 bits (177), Expect = 9e-15
 Identities = 28/126 (22%), Positives = 58/126 (46%), Gaps = 21/126 (16%)

Query: 272 LYVRVVKARELPAMDLTGSIDPFVEV-------KIGNYKGITKHYEKNQNPQWHQVFAF- 323
           L V +++   L AMD  G  DPFV++       K   +K  T+  +K  NP++++ F + 
Sbjct: 39  LIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHK--TQIKKKTLNPEFNEEFFYD 96

Query: 324 -SRDRMQASVLEVVIKDKDLV-KDDFVGIVRFDINEVPLRVP--------PDSPLAPEWY 373
                +    L++ + D D+   +D++G  +  I+    R+          D  +   W+
Sbjct: 97  IKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISAKGERLKHWYECLKNKDKKIE-RWH 155

Query: 374 RLEDKK 379
           +L+++ 
Sbjct: 156 QLQNEN 161

>2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A Length = 166

 Score = 69.3 bits (170), Expect = 9e-14
 Identities = 26/94 (27%), Positives = 46/94 (48%), Gaps = 9/94 (9%)

Query: 5   KLGVQVVGAHNLLPKDGKGSSSAFVELYF--DGQR---FRTTIKENDLNPVWNESFYFNI 59
            L V ++   +L   D  G S  FV+L+   D  +    +T IK+  LNP +NE F+++I
Sbjct: 38  GLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDI 97

Query: 60  SDASKLHYLTLEAYIYNNIGDTNSRS-FLGKVCL 92
              S L   +L+  +++   D    + ++G   L
Sbjct: 98  K-HSDLAKKSLDISVWDY--DIGKSNDYIGGCQL 128

>2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A Length = 166

 Score = 67.0 bits (164), Expect = 6e-13
 Identities = 26/127 (20%), Positives = 51/127 (40%), Gaps = 16/127 (12%)

Query: 438 VNVVEAQDLVPTEKNHFPDVYVKAQIGNQV-----LKTKICQARTLSAVWNEDLLF-VAA 491
           V ++    L   + N + D +VK  +   +      KT+I + +TL+  +NE+  + +  
Sbjct: 41  VGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKK-KTLNPEFNEEFFYDIKH 99

Query: 492 EPFED-HLVLTVEDRVGPGKDEIIGRVIIPLSAIEKR--------ADERIIHSRWFNLEK 542
                  L ++V D      ++ IG   + +SA  +R         ++     RW  L+ 
Sbjct: 100 SDLAKKSLDISVWDYDIGKSNDYIGGCQLGISAKGERLKHWYECLKNKDKKIERWHQLQN 159

Query: 543 PVAVDVD 549
              V  D
Sbjct: 160 ENHVSSD 166

>2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A Length = 166

 Score = 42.8 bits (101), Expect = 1e-04
 Identities = 29/123 (23%), Positives = 46/123 (37%), Gaps = 21/123 (17%)

Query: 593 PSIGILELGILNAVGLHPMKTRDGRGTSDTY------CVAKYGHKWVRTRTLVDNLSPKY 646
              G L +GI+  V L  M   D  G SD +             K  +T+     L+P++
Sbjct: 34  TQQGGLIVGIIRCVHLAAM---DANGYSDPFVKLWLKPDMGKKAKH-KTQIKKKTLNPEF 89

Query: 647 NEQYTWEV--FDPATV-LTVGVFDNSQLGEKSNGNKDLKIGKVRIRISTLETGRIYTHSY 703
           NE++ +++   D A   L + V+D               IG  ++ IS         H Y
Sbjct: 90  NEEFFYDIKHSDLAKKSLDISVWDYDIGKSNDY------IGGCQLGISAKGERL--KHWY 141

Query: 704 PLL 706
             L
Sbjct: 142 ECL 144

>3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} Length = 153

 Score = 71.3 bits (175), Expect = 1e-14
 Identities = 21/118 (17%), Positives = 53/118 (44%), Gaps = 17/118 (14%)

Query: 272 LYVRVVKARELPAMDLTGSIDPFVEV-------KIGNYKGITKHYEKNQNPQWHQVFAFS 324
           L + +++ + L +    G+ DP+V++       ++ + K  T+     ++P +H+ F F 
Sbjct: 29  LLLHIIEGKGLISKQ-PGTCDPYVKISLIPEDSRLRHQK--TQTVPDCRDPAFHEHFFFP 85

Query: 325 -RDRMQASVLEVVIKDKDLV--KDDFVGIVRFDINEVPLRVPPDSPLAPEWYRLEDKK 379
            ++      L V + ++     +   +G + F +  +   + PD  ++  WY L  + 
Sbjct: 86  VQEEDDQKRLLVTVWNRASQSRQSGLIGCMSFGVKSL---LTPDKEIS-GWYYLLGEH 139

>3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} Length = 153

 Score = 70.1 bits (172), Expect = 3e-14
 Identities = 18/123 (14%), Positives = 45/123 (36%), Gaps = 10/123 (8%)

Query: 5   KLGVQVVGAHNLLPKDGKGSSSAFVELYF-----DGQRFRTTIKENDLNPVWNESFYFNI 59
            L + ++    L+ K   G+   +V++         +  +T    +  +P ++E F+F +
Sbjct: 28  VLLLHIIEGKGLISKQP-GTCDPYVKISLIPEDSRLRHQKTQTVPDCRDPAFHEHFFFPV 86

Query: 60  SDASKLHYLTLEAYIYNNIGDTNSRSFLGKVCLTGNSFVPLSDSVVLHYPL--EKRGIFS 117
            +      L +  +   +    +    +G +     S +     +   Y L  E  G   
Sbjct: 87  QEEDDQKRLLVTVWNRASQSRQS--GLIGCMSFGVKSLLTPDKEISGWYYLLGEHLGRTK 144

Query: 118 HVR 120
           H++
Sbjct: 145 HLK 147

>3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} Length = 153

 Score = 61.6 bits (150), Expect = 3e-11
 Identities = 25/134 (18%), Positives = 49/134 (36%), Gaps = 23/134 (17%)

Query: 438 VNVVEAQDLVPTEKNHFPDVYVKAQI-----GNQVLKTKICQARTLSAVWNEDLLF-VAA 491
           ++++E + L+  +     D YVK  +       +  KT+          ++E   F V  
Sbjct: 31  LHIIEGKGLISKQ-PGTCDPYVKISLIPEDSRLRHQKTQTVP-DCRDPAFHEHFFFPVQE 88

Query: 492 EPFEDHLVLTVEDRVGPGK-DEIIGRVIIPLSAIEKRADERIIHSRWFNLEKPVAVDVDQ 550
           E  +  L++TV +R    +   +IG +   + ++          S W+            
Sbjct: 89  EDDQKRLLVTVWNRASQSRQSGLIGCMSFGVKSLL---TPDKEISGWY-----------Y 134

Query: 551 LKKEKFSSRIHLRV 564
           L  E      HL+V
Sbjct: 135 LLGEHLGRTKHLKV 148

>3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} Length = 153

 Score = 40.4 bits (95), Expect = 6e-04
 Identities = 28/121 (23%), Positives = 48/121 (39%), Gaps = 21/121 (17%)

Query: 596 GILELGILNAVGLHPMKTRDGRGTSDTYC-------VAKYGHKWVRTRTLVDNLSPKYNE 648
            +L L I+   GL         GT D Y         ++  H+  +T+T+ D   P ++E
Sbjct: 27  RVLLLHIIEGKGLISK----QPGTCDPYVKISLIPEDSRLRHQ--KTQTVPDCRDPAFHE 80

Query: 649 QYTWEVF--DPATVLTVGVFDNSQLGEKSNGNKDLKIGKVRIRISTLET-GRIYTHSYPL 705
            + + V   D    L V V++ +           L IG +   + +L T  +  +  Y L
Sbjct: 81  HFFFPVQEEDDQKRLLVTVWNRASQSR----QSGL-IGCMSFGVKSLLTPDKEISGWYYL 135

Query: 706 L 706
           L
Sbjct: 136 L 136

>1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A* Length = 159

 Score = 71.3 bits (175), Expect = 1e-14
 Identities = 34/136 (25%), Positives = 65/136 (47%), Gaps = 21/136 (15%)

Query: 272 LYVRVVKARELPAMDLTGSIDPFVEVKIGN-----YKGITKHYEKNQNPQWHQVFAF--S 324
           L V +++A+ L  MD+ G  DP+V++ +        K  T   +   NP +++ F+F   
Sbjct: 27  LTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVP 86

Query: 325 RDRMQASVLEVVIKDKDLV-KDDFVGIVRFDINEVPLRV--------PPDSPLAPEWYRL 375
            +++Q   + V + D D + K+D +G V    N     +         P  P+A +W+ L
Sbjct: 87  FEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIA-QWHTL 145

Query: 376 EDKKGEKIKGELMLAV 391
           + ++    + + MLAV
Sbjct: 146 QVEE----EVDAMLAV 157

>1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A* Length = 159

 Score = 69.0 bits (169), Expect = 9e-14
 Identities = 29/94 (30%), Positives = 51/94 (54%), Gaps = 9/94 (9%)

Query: 5   KLGVQVVGAHNLLPKDGKGSSSAFVELYF--DGQRF---RTTIKENDLNPVWNESFYFNI 59
           KL V ++ A NL   D  G S  +V+++   +G+R    +TTIK+N LNP +NESF F +
Sbjct: 26  KLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEV 85

Query: 60  SDASKLHYLTLEAYIYNNIGDTNSRS-FLGKVCL 92
               ++  + +   + +   D   ++  +GKV +
Sbjct: 86  P-FEQIQKVQVVVTVLDY--DKIGKNDAIGKVFV 116

>1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A* Length = 159

 Score = 66.3 bits (162), Expect = 8e-13
 Identities = 36/133 (27%), Positives = 60/133 (45%), Gaps = 17/133 (12%)

Query: 438 VNVVEAQDLVPTEKNHFPDVYVKAQI--GNQVL---KTKICQARTLSAVWNEDLLF-VAA 491
           V ++EA++L   +     D YVK  +    + L   KT I +  TL+  +NE   F V  
Sbjct: 29  VVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTI-KKNTLNPYYNESFSFEVPF 87

Query: 492 EPFEDH-LVLTVEDRVGPGKDEIIGRVIIPLSAIEKR--------ADERIIHSRWFNLEK 542
           E  +   +V+TV D    GK++ IG+V +  ++            A+ R   ++W  L+ 
Sbjct: 88  EQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQWHTLQV 147

Query: 543 PVAVDVDQLKKEK 555
              VD   L  +K
Sbjct: 148 EEEVDAM-LAVKK 159

>1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A* Length = 159

 Score = 42.0 bits (99), Expect = 2e-04
 Identities = 32/113 (28%), Positives = 48/113 (42%), Gaps = 17/113 (15%)

Query: 593 PSIGILELGILNAVGLHPMKTRDGRGTSDTYCVAK--YGHKWV---RTRTLVDNLSPKYN 647
           P+ G L + IL A  L  M   D  G SD Y         K +   +T    + L+P YN
Sbjct: 22  PTAGKLTVVILEAKNLKKM---DVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYN 78

Query: 648 EQYTWEV--FDPATV-LTVGVFDNSQLGEKSNGNKDLKIGKVRIRISTLETGR 697
           E +++EV       V + V V D  ++G      K+  IGKV +  ++     
Sbjct: 79  ESFSFEVPFEQIQKVQVVVTVLDYDKIG------KNDAIGKVFVGYNSTGAEL 125

>2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 142

 Score = 70.9 bits (174), Expect = 1e-14
 Identities = 32/121 (26%), Positives = 45/121 (37%), Gaps = 20/121 (16%)

Query: 272 LYVRVVKARELPAMDLTGSIDPFVEV-------KIGNYKGITKHYEKNQNPQWHQVFAF- 323
           L V V   R L A    GS DP+V +       + G  K  T   +K  NP + Q F F 
Sbjct: 26  LIVVVHACRNLIAFSEDGS-DPYVRMYLLPDKRRSGRRK--THVSKKTLNPVFDQSFDFS 82

Query: 324 -SRDRMQASVLEVVIKDKDLV---KDDFVGIVRFDINEVPLRVPPDSPLAPEWYRLEDKK 379
            S   +Q   L+V +K+           +G V   +    L          +WY L +  
Sbjct: 83  VSLPEVQRRTLDVAVKNSGGFLSKDKGLLGKVLVALASEELAKG-----WTQWYDLTEDS 137

Query: 380 G 380
           G
Sbjct: 138 G 138

>2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 142

 Score = 70.5 bits (173), Expect = 2e-14
 Identities = 32/115 (27%), Positives = 54/115 (46%), Gaps = 9/115 (7%)

Query: 5   KLGVQVVGAHNLLPKDGKGSSSAFVELYF--DGQR---FRTTIKENDLNPVWNESFYFNI 59
           KL V V    NL+     GS   +V +Y   D +R    +T + +  LNPV+++SF F++
Sbjct: 25  KLIVVVHACRNLIAFSEDGSDP-YVRMYLLPDKRRSGRRKTHVSKKTLNPVFDQSFDFSV 83

Query: 60  SDASKLHYLTLEAYIYNNIGDT-NSRSFLGKVCLTGNSFVPLSDSVVLHYPLEKR 113
           S   ++   TL+  + N+ G     +  LGKV +   +   L+      Y L + 
Sbjct: 84  S-LPEVQRRTLDVAVKNSGGFLSKDKGLLGKVLV-ALASEELAKGWTQWYDLTED 136

>2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 142

 Score = 54.3 bits (131), Expect = 8e-09
 Identities = 21/114 (18%), Positives = 49/114 (42%), Gaps = 15/114 (13%)

Query: 438 VNVVEAQDLVPTEKNHFPDVYVKAQI-----GNQVLKTKICQARTLSAVWNEDLLF-VAA 491
           V V   ++L+   ++   D YV+  +      +   KT +   +TL+ V+++   F V+ 
Sbjct: 28  VVVHACRNLIAFSEDG-SDPYVRMYLLPDKRRSGRRKTHV-SKKTLNPVFDQSFDFSVSL 85

Query: 492 EPFEDH-LVLTV--EDRVGPGKDEIIGRVIIPLSAIEKRADERIIHSRWFNLEK 542
              +   L + V            ++G+V++ L++ E    +      W++L +
Sbjct: 86  PEVQRRTLDVAVKNSGGFLSKDKGLLGKVLVALASEEL--AKGWTQ--WYDLTE 135

>2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 142

 Score = 45.1 bits (107), Expect = 1e-05
 Identities = 21/120 (17%), Positives = 41/120 (34%), Gaps = 18/120 (15%)

Query: 596 GILELGILNAVGLHPMKTRDGRGTSDTYCV------AKYGHKWVRTRTLVDNLSPKYNEQ 649
             L + +     L           SD Y         +   +  +T      L+P +++ 
Sbjct: 24  NKLIVVVHACRNLIAF----SEDGSDPYVRMYLLPDKRRSGRR-KTHVSKKTLNPVFDQS 78

Query: 650 YTWEVFD---PATVLTVGVFDNSQLGEKSNGNKDLKIGKVRIRISTLETGRIYTHSYPLL 706
           + + V         L V V ++     K  G     +GKV + +++ E  + +T  Y L 
Sbjct: 79  FDFSVSLPEVQRRTLDVAVKNSGGFLSKDKG----LLGKVLVALASEELAKGWTQWYDLT 134

>3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus} Length = 138

 Score = 70.8 bits (174), Expect = 1e-14
 Identities = 33/123 (26%), Positives = 65/123 (52%), Gaps = 21/123 (17%)

Query: 272 LYVRVVKARELPAMDLTGSIDPFVEV-------KIGNYKGITKHYEKNQNPQWHQVFAF- 323
           + V ++KAR L AMD+ G+ DP+V+V       ++   K  T   ++N NP +++ FAF 
Sbjct: 18  IIVNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKK--TVTKKRNLNPIFNESFAFD 75

Query: 324 -SRDRMQASVLEVVIKDKDLV-KDDFVGIVRFDINEVPLRVP--------PDSPLAPEWY 373
              ++++ + + + + DKD + ++D +G +       P  V         P  P+A +W+
Sbjct: 76  IPTEKLRETTIIITVMDKDKLSRNDVIGKIYLSWKSGPGEVKHWKDMIARPRQPVA-QWH 134

Query: 374 RLE 376
           +L+
Sbjct: 135 QLK 137

>3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus} Length = 138

 Score = 70.8 bits (174), Expect = 1e-14
 Identities = 30/98 (30%), Positives = 52/98 (53%), Gaps = 9/98 (9%)

Query: 5   KLGVQVVGAHNLLPKDGKGSSSAFVELYF--DGQRF---RTTIKENDLNPVWNESFYFNI 59
            + V ++ A NL   D  G+S  +V+++     +R    +T  K+ +LNP++NESF F+I
Sbjct: 17  SIIVNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTKKRNLNPIFNESFAFDI 76

Query: 60  SDASKLHYLTLEAYIYNNIGDTNSRS-FLGKVCLTGNS 96
               KL   T+   + +   D  SR+  +GK+ L+  S
Sbjct: 77  P-TEKLRETTIIITVMDK--DKLSRNDVIGKIYLSWKS 111

>3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus} Length = 138

 Score = 63.9 bits (156), Expect = 3e-12
 Identities = 24/119 (20%), Positives = 55/119 (46%), Gaps = 16/119 (13%)

Query: 438 VNVVEAQDLVPTEKNHFPDVYVKAQI--GNQVL---KTKICQARTLSAVWNEDLLF-VAA 491
           VN+++A++L   +     D YVK  +   ++ +   KT   + R L+ ++NE   F +  
Sbjct: 20  VNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTKK-RNLNPIFNESFAFDIPT 78

Query: 492 EPFEDH-LVLTVEDRVGPGKDEIIGRVIIPLSAIEKRADE--------RIIHSRWFNLE 541
           E   +  +++TV D+    ++++IG++ +   +               R   ++W  L+
Sbjct: 79  EKLRETTIIITVMDKDKLSRNDVIGKIYLSWKSGPGEVKHWKDMIARPRQPVAQWHQLK 137

>3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus} Length = 138

 Score = 43.8 bits (104), Expect = 4e-05
 Identities = 29/113 (25%), Positives = 47/113 (41%), Gaps = 17/113 (15%)

Query: 593 PSIGILELGILNAVGLHPMKTRDGRGTSDTYCVAK--YGHKWV---RTRTLVDNLSPKYN 647
           PS   + + I+ A  L  M   D  GTSD Y      Y  K V   +T T   NL+P +N
Sbjct: 13  PSANSIIVNIIKARNLKAM---DIGGTSDPYVKVWLMYKDKRVEKKKTVTKKRNLNPIFN 69

Query: 648 EQYTWEV---FDPATVLTVGVFDNSQLGEKSNGNKDLKIGKVRIRISTLETGR 697
           E + +++       T + + V D  +L       ++  IGK+ +   +     
Sbjct: 70  ESFAFDIPTEKLRETTIIITVMDKDKLS------RNDVIGKIYLSWKSGPGEV 116

>1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A Length = 153

 Score = 70.1 bits (172), Expect = 3e-14
 Identities = 25/98 (25%), Positives = 48/98 (48%), Gaps = 9/98 (9%)

Query: 5   KLGVQVVGAHNLLPKDGKGSSSAFVELYF--DGQR---FRTTIKENDLNPVWNESFYFNI 59
            L V V+ A +L   D  G S  +V++      +R    +T +K+   N V+NE F F+I
Sbjct: 31  TLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFDI 90

Query: 60  SDASKLHYLTLEAYIYNNIGDTNSRS-FLGKVCLTGNS 96
                L  +++E  + ++  +  SR+  +G++ L   +
Sbjct: 91  P-CESLEEISVEFLVLDS--ERGSRNEVIGRLVLGATA 125

>1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A Length = 153

 Score = 68.5 bits (168), Expect = 1e-13
 Identities = 28/124 (22%), Positives = 54/124 (43%), Gaps = 21/124 (16%)

Query: 272 LYVRVVKARELPAMDLTGSIDPFVEV-------KIGNYKGITKHYEKNQNPQWHQVFAF- 323
           L V V+KAR LP  D++G  DP+V+V       +I   K  T   +   N  ++++F F 
Sbjct: 32  LTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKK--THVKKCTPNAVFNELFVFD 89

Query: 324 -SRDRMQASVLEVVIKDKDLV-KDDFVGIVRFDINEVPLRVP--------PDSPLAPEWY 373
              + ++   +E ++ D +   +++ +G +                    P   +A +W+
Sbjct: 90  IPCESLEEISVEFLVLDSERGSRNEVIGRLVLGATAEGSGGGHWKEICDFPRRQIA-KWH 148

Query: 374 RLED 377
            L D
Sbjct: 149 MLCD 152

>1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A Length = 153

 Score = 62.8 bits (153), Expect = 1e-11
 Identities = 28/118 (23%), Positives = 54/118 (45%), Gaps = 16/118 (13%)

Query: 438 VNVVEAQDLVPTEKNHFPDVYVKAQI--GNQVL---KTKICQARTLSAVWNEDLLF-VAA 491
           V V++A+ L  ++ +   D YVK  +    + +   KT + +  T +AV+NE  +F +  
Sbjct: 34  VVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKK-CTPNAVFNELFVFDIPC 92

Query: 492 EPFED-HLVLTVEDRVGPGKDEIIGRVIIPLSAIEKRADE--------RIIHSRWFNL 540
           E  E+  +   V D     ++E+IGR+++  +A               R   ++W  L
Sbjct: 93  ESLEEISVEFLVLDSERGSRNEVIGRLVLGATAEGSGGGHWKEICDFPRRQIAKWHML 150

>1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A Length = 153

 Score = 42.3 bits (100), Expect = 1e-04
 Identities = 18/113 (15%), Positives = 40/113 (35%), Gaps = 17/113 (15%)

Query: 593 PSIGILELGILNAVGLHPMKTRDGRGTSDTYCVAK--YGHKWV---RTRTLVDNLSPKYN 647
            +   L + +L A  L      D  G SD Y      +  K +   +T       +  +N
Sbjct: 27  STTNTLTVVVLKARHLPKS---DVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFN 83

Query: 648 EQYTWEV---FDPATVLTVGVFDNSQLGEKSNGNKDLKIGKVRIRISTLETGR 697
           E + +++         +   V D+ +        ++  IG++ +  +   +G 
Sbjct: 84  ELFVFDIPCESLEEISVEFLVLDSERGS------RNEVIGRLVLGATAEGSGG 130

>1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 138

 Score = 69.7 bits (171), Expect = 4e-14
 Identities = 15/117 (12%), Positives = 43/117 (36%), Gaps = 15/117 (12%)

Query: 272 LYVRVVKARELPAMDLTGSIDPFVEVKI----GNYKGITKHYEKNQNPQWHQVFAF--SR 325
           L+V  ++A      +  G  D +V+  +    G+ +  T   ++  +  W +      + 
Sbjct: 28  LFVTRLEAV---TSNHDGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPLAE 84

Query: 326 DRMQASVLEVVIKDKDLV-KDDFVGIVRFDINEVPLRVPPDSPLAPEWYRLEDKKGE 381
           + +  + L + ++  D   +    G +R  ++   + +        +W  L+     
Sbjct: 85  EELPTATLTLTLRTCDRFSRHSVAGELRLGLDGTSVPLGAA-----QWGELKTSGPS 136

>1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 138

 Score = 62.4 bits (152), Expect = 1e-11
 Identities = 21/115 (18%), Positives = 40/115 (34%), Gaps = 12/115 (10%)

Query: 5   KLGVQVVGAHNLLPKDGKGSSSAFVELYF----DGQRFRTTIKENDLNPVWNESFYFNIS 60
           +L V  + A      +  G    +V+            +T +K+  L+  W E     ++
Sbjct: 27  ELFVTRLEAVTS---NHDGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPLA 83

Query: 61  DASKLHYLTLEAYIYNNIGDTNSR-SFLGKVCLTGNSFVPLSDSVVLHYPLEKRG 114
           +  +L   TL   +     D  SR S  G++ L  +    +         L+  G
Sbjct: 84  E-EELPTATLTLTLRTC--DRFSRHSVAGELRLGLDG-TSVPLGAAQWGELKTSG 134

>1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 138

 Score = 57.4 bits (139), Expect = 6e-10
 Identities = 22/113 (19%), Positives = 41/113 (36%), Gaps = 14/113 (12%)

Query: 437 RVNVVEAQDLVPTEKNHFPDVYVKAQI----GNQVLKTKICQARTLSAVWNEDLLF-VAA 491
            V  +EA        +   D YV+  +    G+   +T + + R L   W E L+  +A 
Sbjct: 29  FVTRLEAVTS---NHDGGCDCYVQGSVANRTGSVEAQTALKK-RQLHTTWEEGLVLPLAE 84

Query: 492 EPFEDH-LVLTVEDRVGPGKDEIIGRVIIPLSAIEKRADERIIHSRWFNLEKP 543
           E      L LT+       +  + G + + L          +  ++W  L+  
Sbjct: 85  EELPTATLTLTLRTCDRFSRHSVAGELRLGLDGT----SVPLGAAQWGELKTS 133

>1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 138

 Score = 41.2 bits (97), Expect = 3e-04
 Identities = 17/117 (14%), Positives = 31/117 (26%), Gaps = 19/117 (16%)

Query: 596 GILELGILNAVGLHPMKTRDGRGTSDTYCVAK----YGHKWVRTRTLVDNLSPKYNEQYT 651
             L +  L AV        +  G  D Y         G    +T      L   + E   
Sbjct: 26  AELFVTRLEAVTS------NHDGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLV 79

Query: 652 WEVFD---PATVLTVGVFDNSQLGEKSNGNKDLKIGKVRIRISTLETGRIYTHSYPL 705
             + +   P   LT+ +    +        +    G++R+ +              L
Sbjct: 80  LPLAEEELPTATLTLTLRTCDRFS------RHSVAGELRLGLDGTSVPLGAAQWGEL 130

>2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus} Length = 171

 Score = 69.8 bits (171), Expect = 5e-14
 Identities = 26/116 (22%), Positives = 43/116 (37%), Gaps = 16/116 (13%)

Query: 272 LYVRVVKARELPAMDLTGSI-DPFVEV-------KIGNYKGITKHYEKNQNPQWHQVFAF 323
           L V V++AR L     + S   P+V+V        I   K  T+   K  +P + Q   F
Sbjct: 32  LEVEVIRARSLTQKPGSKSTPAPYVKVYLLENGACIAKKK--TRIARKTLDPLYQQSLVF 89

Query: 324 SRDRMQASVLEVVIKDKDLV-KDDFVGIVRFDINEVPLRVPPDSPLAPEWYRLEDK 378
                   +  +V  D   +    F+G+ +  + E+ L           WY+L   
Sbjct: 90  DESPQGKVLQVIVWGDYGRMDHKCFMGVAQILLEELDLSSM-----VIGWYKLFPP 140

>2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus} Length = 171

 Score = 68.7 bits (168), Expect = 2e-13
 Identities = 33/145 (22%), Positives = 65/145 (44%), Gaps = 15/145 (10%)

Query: 5   KLGVQVVGAHNLLPKDG-KGSSSAFVELYF--DGQR---FRTTIKENDLNPVWNESFYFN 58
           +L V+V+ A +L  K G K + + +V++Y   +G      +T I    L+P++ +S  F+
Sbjct: 31  QLEVEVIRARSLTQKPGSKSTPAPYVKVYLLENGACIAKKKTRIARKTLDPLYQQSLVFD 90

Query: 59  ISDASKLHYLTLEAYIYNNIGDTNSRSFLGKVCLTGNSFVPLSDSVVLHYPL-EKRGIFS 117
            S   K     L+  ++ + G  + + F+G   +     + LS  V+  Y L     +  
Sbjct: 91  ESPQGK----VLQVIVWGDYGRMDHKCFMGVAQI-LLEELDLSSMVIGWYKLFPPSSLVD 145

Query: 118 HVRGELGLKVYITDDPSIKSSTPLP 142
                L  +   +   S++SS+  P
Sbjct: 146 PTLAPLTRRASQS---SLESSSGPP 167

>2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus} Length = 171

 Score = 57.5 bits (139), Expect = 1e-09
 Identities = 26/112 (23%), Positives = 41/112 (36%), Gaps = 17/112 (15%)

Query: 438 VNVVEAQDLVPTE-KNHFPDVYVKAQI-----GNQVLKTKICQARTLSAVWNEDLLFVAA 491
           V V+ A+ L         P  YVK  +          KT+I + +TL  ++ + L+F   
Sbjct: 34  VEVIRARSLTQKPGSKSTPAPYVKVYLLENGACIAKKKTRIAR-KTLDPLYQQSLVF-DE 91

Query: 492 EPFEDHLVLTV---EDRVGPGKDEIIGRVIIPLSAIEKRADERIIHSRWFNL 540
            P    L + V     R+       +G   I L   E      +I   W+ L
Sbjct: 92  SPQGKVLQVIVWGDYGRMD--HKCFMGVAQILLE--ELDLSSMVIG--WYKL 137

>2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus} Length = 171

 Score = 51.7 bits (124), Expect = 1e-07
 Identities = 27/139 (19%), Positives = 47/139 (33%), Gaps = 14/139 (10%)

Query: 596 GILELGILNAVGLHPMKTRDGRGTSDTYCVAK--YGHKWV---RTRTLVDNLSPKYNEQY 650
           G LE+ ++ A  L        + T   Y           +   +TR     L P Y +  
Sbjct: 30  GQLEVEVIRARSLTQK--PGSKSTPAPYVKVYLLENGACIAKKKTRIARKTLDPLYQQSL 87

Query: 651 TWEVFDPATVLTVGVFDNSQLGEKSNGNKDLKIGKVRIRISTLETGRIYTHSYPLLVLHP 710
            ++      VL V V+ +    +     K   +G  +I +  L+   +    Y L    P
Sbjct: 88  VFDESPQGKVLQVIVWGDYGRMDH----KCF-MGVAQILLEELDLSSMVIGWYKL--FPP 140

Query: 711 TGVKKMGELHLAIRFSCTS 729
           + +       L  R S +S
Sbjct: 141 SSLVDPTLAPLTRRASQSS 159

>2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 147

 Score = 67.8 bits (166), Expect = 2e-13
 Identities = 26/121 (21%), Positives = 43/121 (35%), Gaps = 18/121 (14%)

Query: 272 LYVRVVKARELPAM-------DLTGSIDPFVEVKIGNYKGI---TKHYEKNQNPQWHQVF 321
           L VRV++AR+LP               +P+V++ +   +     T    K Q P + + +
Sbjct: 28  LTVRVIEARDLPPPISHDGSRQDMAHSNPYVKICLLPDQKNSKQTGVKRKTQKPVFEERY 87

Query: 322 AF--SRDRMQASVLEVVIKDKD-LVKDDFVGIVRFDINEVPLRVPPDSPLAPEWYRLEDK 378
            F       Q   L + + D D   +   +G V   + EV L           W  L   
Sbjct: 88  TFEIPFLEAQRRTLLLTVVDFDKFSRHCVIGKVSVPLCEVDL-----VKGGHWWKALIPS 142

Query: 379 K 379
            
Sbjct: 143 G 143

>2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 147

 Score = 65.9 bits (161), Expect = 9e-13
 Identities = 27/121 (22%), Positives = 44/121 (36%), Gaps = 15/121 (12%)

Query: 5   KLGVQVVGAHNLLP-------KDGKGSSSAFVELYF---DGQRFRTTIKENDLNPVWNES 54
            L V+V+ A +L P       +     S+ +V++          +T +K     PV+ E 
Sbjct: 27  HLTVRVIEARDLPPPISHDGSRQDMAHSNPYVKICLLPDQKNSKQTGVKRKTQKPVFEER 86

Query: 55  FYFNISDASKLHYLTLEAYIYNNIGDTNSRS-FLGKVCLTGNSFVPLSDSVVLHYPLEKR 113
           + F I    +    TL   + +   D  SR   +GKV +     V L         L   
Sbjct: 87  YTFEIPFL-EAQRRTLLLTVVDF--DKFSRHCVIGKVSV-PLCEVDLVKGGHWWKALIPS 142

Query: 114 G 114
           G
Sbjct: 143 G 143

>2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 147

 Score = 55.5 bits (134), Expect = 4e-09
 Identities = 29/132 (21%), Positives = 50/132 (37%), Gaps = 21/132 (15%)

Query: 426 KVYHSPRLWYVRVNVVEAQDLVPT-------EKNHFPDVYVKAQI---GNQVLKTKICQA 475
              +     ++ V V+EA+DL P        +     + YVK  +        +T + + 
Sbjct: 18  STQYDLLHNHLTVRVIEARDLPPPISHDGSRQDMAHSNPYVKICLLPDQKNSKQTGV-KR 76

Query: 476 RTLSAVWNEDLLFVAAEPFED----HLVLTVEDRVGPGKDEIIGRVIIPLSAIEKRADER 531
           +T   V+ E   F    PF +     L+LTV D     +  +IG+V +PL  ++      
Sbjct: 77  KTQKPVFEERYTFEI--PFLEAQRRTLLLTVVDFDKFSRHCVIGKVSVPLCEVDLVK--- 131

Query: 532 IIHSRWFNLEKP 543
                W  L   
Sbjct: 132 -GGHWWKALIPS 142

>2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 147

 Score = 49.7 bits (119), Expect = 3e-07
 Identities = 21/120 (17%), Positives = 39/120 (32%), Gaps = 16/120 (13%)

Query: 596 GILELGILNAVGLHPM----KTRDGRGTSDTYCVAKY---GHKWVRTRTLVDNLSPKYNE 648
             L + ++ A  L P      +R     S+ Y             +T        P + E
Sbjct: 26  NHLTVRVIEARDLPPPISHDGSRQDMAHSNPYVKICLLPDQKNSKQTGVKRKTQKPVFEE 85

Query: 649 QYTWEVFD---PATVLTVGVFDNSQLGEKSNGNKDLKIGKVRIRISTLETGRIYTHSYPL 705
           +YT+E+         L + V D  +          + IGKV + +  ++  +       L
Sbjct: 86  RYTFEIPFLEAQRRTLLLTVVDFDKFSR-----HCV-IGKVSVPLCEVDLVKGGHWWKAL 139

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 72.6 bits (177), Expect = 5e-13
 Identities = 113/802 (14%), Positives = 198/802 (24%), Gaps = 269/802 (33%)

Query: 188 HHHQHHPSTTVVNRHVPKYEADEMKSEPQPPKLVHMYSAASSQSADYALKETSPYLGGGK 247
           HHH HH             E  E + + +   ++ ++  A     ++  K+         
Sbjct: 1   HHHHHHMDF----------ETGEHQYQYK--DILSVFEDAFVD--NFDCKDVQDMPKS-- 44

Query: 248 VVGGRVIHADKTASTYDLVERMYFLYVRVVKARELPAMDLTGSIDPFVEVKIG-NYKGIT 306
           ++    I  D    + D V     L+  ++  +E         +  FVE  +  NYK + 
Sbjct: 45  ILSKEEI--DHIIMSKDAVSGTLRLFWTLLSKQE-------EMVQKFVEEVLRINYKFLM 95

Query: 307 K--HYEKNQNPQWHQVFAFSRDRMQASVLEVVIKDKDLVKDDFVGIVRFDINEVPLRVPP 364
                E+ Q     +++   RDR+          D  +     V            R+ P
Sbjct: 96  SPIKTEQRQPSMMTRMYIEQRDRLY--------NDNQVFAKYNVS-----------RLQP 136

Query: 365 DSPLAPEWYRLEDKKGEKIKGELMLAVWIGTQ--ADEAFSDAWHSDAATPVDSTPAITAV 422
              L      L   K   I G  +L    G    A +                   +   
Sbjct: 137 YLKLRQALLELRPAKNVLIDG--VLG--SGKTWVALDVCLSY-------------KVQCK 179

Query: 423 IRSKVY-------HSPR--------LWY-VRVNVVEAQDLVPTEKNHFPDVYVKAQIGNQ 466
           +  K++       +SP         L Y +  N     D     K     +         
Sbjct: 180 MDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSI-------QA 232

Query: 467 VLKTKICQAR------TLSAVWNEDLLFVAAEPFEDH---LVLT----VEDRVGPGKDEI 513
            L+  +           L  V N          F      L+ T    V D +       
Sbjct: 233 ELRRLLKSKPYENCLLVLLNVQNAKAW----NAFNLSCKILLTTRFKQVTDFLSAA---- 284

Query: 514 IGRVIIPLSAIEKRADERIIHSRWFNLEKPVAVDVDQLKKEKFSSRIHLRVCLDGGYHVL 573
                             + H     L       +           +  R          
Sbjct: 285 ------------TTTHISLDHHSM-TLTPDEVKSL-------LLKYLDCRP--------- 315

Query: 574 DESTHYSSDLRPTAKQLWRPSIGILELGILNAVGLHPMKTRDGRGTSDTYCVAKYGHKWV 633
                   DL                L I+          RDG  T D +   K+ +   
Sbjct: 316 -------QDLPREVLT-----TNPRRLSIIAE------SIRDGLATWDNW---KHVNCDK 354

Query: 634 RTRTL---VDNLSPKYNEQYTWE--VFD-----PATVLTV----GVFDNSQ-----LGEK 674
            T  +   ++ L P    +      VF      P  +L++     +  +       L + 
Sbjct: 355 LTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKY 414

Query: 675 SNGNKDLKIGKVRIRISTLETGRIYTHSYPLLVLHPTGVKKMGELHLAIRFSCTSFANML 734
           S   K  K               I   S  L +     ++    LH           +++
Sbjct: 415 SLVEKQPK------------ESTISIPSIYLELKVK--LENEYALH----------RSIV 450

Query: 735 YLYSRPLLPKMHYVRPFSIMQLDMLRHQAVNIVAARLGRAEPPLRKEVVEYMSDVDSHLW 794
             Y+   +PK           LD           + +G            +      HL 
Sbjct: 451 DHYN---IPKTFDSDDLIPPYLD-------QYFYSHIG------------H------HLK 482

Query: 795 SMRRS-KANFFRLMTVFSGLFAVGKWFADICMWKNPITTVLVHVLYLMLACFPELILPTV 853
           ++    +   FR              F D   +   +   + H      A     IL T 
Sbjct: 483 NIEHPERMTLFR------------MVFLDF-RF---LEQKIRHDSTAWNASGS--ILNT- 523

Query: 854 FLYMFLIGIWNYRYRPRYPPHMNIKISQAEAVHPDELDEEFDTFPTSRSPELVRMRYDRL 913
                L  +  Y+    Y       I   +    + L      F       L+  +Y  L
Sbjct: 524 -----LQQLKFYK---PY-------ICDNDP-KYERLVNAILDFLPKIEENLICSKYTDL 567

Query: 914 RSVA--GRIQTVVGDVATQGER 933
             +A     + +  +   Q +R
Sbjct: 568 LRIALMAEDEAIFEEAHKQVQR 589

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 62.9 bits (152), Expect = 5e-10
 Identities = 90/633 (14%), Positives = 169/633 (26%), Gaps = 222/633 (35%)

Query: 483 NEDLLFVAAEPF---------EDHL--VLTVEDRVGPGKDEIIGRVIIPLSAIEKRADER 531
            +D+L V  + F         +D    +L+ E+      D II           K A   
Sbjct: 18  YKDILSVFEDAFVDNFDCKDVQDMPKSILSKEE-----IDHIIM---------SKDAVSG 63

Query: 532 IIHSRWFNLEKP---VAVDVDQLKKEKFS---SRIHLRVCLDGGYHVLDESTHYSS---- 581
            +   W  L K    V   V+++ +  +    S I               +  Y      
Sbjct: 64  TLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTE-QRQPS----MMTRMYIEQRDR 118

Query: 582 ---DLRPTAK-QLWRPSI------GILELGILNAVGLHPMKTRDGRGTS----------D 621
              D +  AK  + R          +LEL     V +  +    G G +           
Sbjct: 119 LYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVL---GSGKTWVALDVCLSYK 175

Query: 622 TYCVAKYGHKWV------RTRTLVDNLSPKYNEQYTWEVFDPATVLTVGVFDNSQLGEKS 675
             C   +   W+         T+++ L      Q      DP         + +   + S
Sbjct: 176 VQCKMDFKIFWLNLKNCNSPETVLEML------QKLLYQIDP---------NWTSRSDHS 220

Query: 676 NGNKDLKIGKVRIRISTLETGRIYTHSYPLLVL----HPTGVKKMGELHLAIRFSC---- 727
           + N  L+I  ++  +  L   + Y +   LLVL    +                SC    
Sbjct: 221 S-NIKLRIHSIQAELRRLLKSKPYENC--LLVLLNVQNAKAWNAFN-------LSCKILL 270

Query: 728 ----TSFANMLYLYSRPLLPKMHYVRPFSIMQLDMLRHQAVNIVAARLGRAEPPLRKEVV 783
                   + L   +   +   H+    +         +  +++   L      L +EV+
Sbjct: 271 TTRFKQVTDFLSAATTTHISLDHHSMTLT-------PDEVKSLLLKYLDCRPQDLPREVL 323

Query: 784 -----------EYMSDVDSHLWSMRRSKANFFRLMTVFSGLFAVGKWFADICMWKNPITT 832
                      E + D  +  W       N  +L T+            +  +  N +  
Sbjct: 324 TTNPRRLSIIAESIRDGLAT-WD-NWKHVNCDKLTTII-----------ESSL--NVLEP 368

Query: 833 VLVHVLYLMLACFPE--LILPTVFLYMF--------------------LIGIWNYRYRPR 870
                ++  L+ FP    I PT+ L +                     L+          
Sbjct: 369 AEYRKMFDRLSVFPPSAHI-PTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTIS 427

Query: 871 YPP---HMNIKISQAEAVH-------------------PDELD----------------- 891
            P     + +K+    A+H                   P  LD                 
Sbjct: 428 IPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHP 487

Query: 892 EEFDTFPTSRSPELVRMRYDRLRSVAGRIQTV---------VGDVATQGERLQALISWRD 942
           E    F         RM +   R +  +I+           + +   Q +  +  I   D
Sbjct: 488 ERMTLF---------RMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDND 538

Query: 943 PRATAI---FITFCLVAALVLFLTPFQVIAALA 972
           P+   +    + F       L  + +  +  +A
Sbjct: 539 PKYERLVNAILDFLPKIEENLICSKYTDLLRIA 571

>3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus} Length = 540

 Score = 62.2 bits (150), Expect = 5e-10
 Identities = 26/133 (19%), Positives = 44/133 (33%), Gaps = 19/133 (14%)

Query: 8   VQVVGAHNLLPKDGKGSSSAFVELYFDGQRFRTTIKENDLNPVWNESFYFNISDASKLHY 67
           V    A +L       ++ A+++++F GQ FRT +  N+ NP W +   F     S    
Sbjct: 398 VSNFRAEHLWGDYTT-ATDAYLKVFFGGQEFRTGVVWNNNNPRWTDKMDFENVLLSTGGP 456

Query: 68  LTLEAYIYNNIGDTNSRS-FLGKVCLTGNSFVPLSDSVVLHYPLEKRGIFSHVRGELGLK 126
           L ++ +      D       LG          P S    +   L          G +   
Sbjct: 457 LRVQVWDA----DYGWDDDLLGSC-----DRSPHSGFHEVTCELNH--------GRVKFS 499

Query: 127 VYITDDPSIKSST 139
            +    P +   T
Sbjct: 500 YHAKCLPHLTGGT 512

>3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus} Length = 540

 Score = 61.1 bits (147), Expect = 1e-09
 Identities = 21/89 (23%), Positives = 31/89 (34%), Gaps = 3/89 (3%)

Query: 269 MYFLYVRVVKARELPAMDLTGSIDPFVEVKIGNYKGITKHYEKNQNPQWHQVFAFSR-DR 327
           +  L V   +A  L     T + D +++V  G  +  T     N NP+W     F     
Sbjct: 393 LAHLVVSNFRAEHLWGDYTTAT-DAYLKVFFGGQEFRTGVVWNNNNPRWTDKMDFENVLL 451

Query: 328 MQASVLEVVIKDKDLV-KDDFVGIVRFDI 355
                L V + D D    DD +G      
Sbjct: 452 STGGPLRVQVWDADYGWDDDLLGSCDRSP 480

>3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus} Length = 540

 Score = 60.3 bits (145), Expect = 2e-09
 Identities = 19/116 (16%), Positives = 35/116 (30%), Gaps = 11/116 (9%)

Query: 428 YHSPRLWYVRVNVVEAQDLVPTEKNHFPDVYVKAQIGNQVLKTKICQARTLSAVWNEDLL 487
                L ++ V+   A+ L   +     D Y+K   G Q  +T +      +  W + + 
Sbjct: 388 PRQRGLAHLVVSNFRAEHL-WGDYTTATDAYLKVFFGGQEFRTGVVW-NNNNPRWTDKMD 445

Query: 488 F-VAAEPFEDHLVLTVEDRVGPGKDEIIGRVIIPLSAIEKRADERIIHSRWFNLEK 542
           F          L + V D      D+++G       +          H     L  
Sbjct: 446 FENVLLSTGGPLRVQVWDADYGWDDDLLGSCDRSPHSGF--------HEVTCELNH 493

>3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus} Length = 540

 Score = 45.3 bits (106), Expect = 9e-05
 Identities = 31/218 (14%), Positives = 65/218 (29%), Gaps = 33/218 (15%)

Query: 513 IIGRVIIPLSAIEKRADERIIHSRWFNLEKPVAVDVDQLKKEKFSSRIHLRVCLDGGYHV 572
           ++   + PL  + +  + +    R           +      +   +   R C  G +  
Sbjct: 317 LVDYSLEPLHTLLEEQNPKREALRQA---------ISHYIMSRARWQNCSRPCRSGQHKS 367

Query: 573 LDESTHYS-SDLRPTAKQLWRPSIGILELGILNAVGLHPMKTRDGRGTSDTYCVAKYGHK 631
             +S      D + T +       G+  L + N    H          +D Y    +G +
Sbjct: 368 SHDSCQCECQDSKVTNQDCCPRQRGLAHLVVSNFRAEHLWGDYTTA--TDAYLKVFFGGQ 425

Query: 632 WVRTRTLVDNLSPKYNEQYTWEVFD--PATVLTVGVFDNSQLGEKSNGNKDLKIGKVRIR 689
             RT  + +N +P++ ++  +E         L V V+D         G  D  +G     
Sbjct: 426 EFRTGVVWNNNNPRWTDKMDFENVLLSTGGPLRVQVWD------ADYGWDDDLLGSCDRS 479

Query: 690 ISTLETGRIYTHSYPLLVLHPTGVKKMGELHLAIRFSC 727
             +      +  +  L           G +  +    C
Sbjct: 480 PHS----GFHEVTCEL---------NHGRVKFSYHAKC 504

>3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B Length = 510

 Score = 51.9 bits (124), Expect = 7e-07
 Identities = 28/116 (24%), Positives = 49/116 (42%), Gaps = 1/116 (0%)

Query: 267 ERMYFLYVRVVKARELPAMDLTGSIDPFVEVKIGNYKGITKHYEKNQNPQWHQVFAFSRD 326
             +  L V V++A EL A    G  +P+ E+ +G+    T+  +   NP+W+    F   
Sbjct: 384 SGIGRLMVHVIEATELKACKPNGKSNPYCEISMGSQSYTTRTIQDTLNPKWNFNCQFFIK 443

Query: 327 RMQASVLEVVIKDKDL-VKDDFVGIVRFDINEVPLRVPPDSPLAPEWYRLEDKKGE 381
            +   VL + + D+D    DDF+G     + ++        P+       E   GE
Sbjct: 444 DLYQDVLCLTLFDRDQFSPDDFLGRTEIPVAKIRTEQESKGPMTRRLLLHEVPTGE 499

>3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V hearing, membrane, synapse, transmembrane, membrane protein; 1.95A {Rattus norvegicus} Length = 144

 Score = 48.5 bits (115), Expect = 8e-07
 Identities = 22/124 (17%), Positives = 42/124 (33%), Gaps = 14/124 (11%)

Query: 272 LYVRVVKARELPAMDLTGSIDPFVEVKIGNYKGITKHYEKNQNP-QWHQVFAF--SRDRM 328
           L V +    EL      G  D   +V        ++  E  ++   + + F +  +    
Sbjct: 23  LIVHLKTVSELR-----GRADRIAKVTFRGQSFYSRVLENCEDVADFDETFRWPVASSID 77

Query: 329 QASVLEVVIKDKD-LVKDDFVGIVRFDINEVPLRVPPDSPLAPEWYRLEDKKGEKIKGEL 387
           +  VLE+ I +   +  +  +G  R     + L+   +         L D     IK  L
Sbjct: 78  RNEVLEIQIFNYSKVFSNKLIGTFR-----MVLQKVVEENRVEVSDTLIDDNNAIIKTSL 132

Query: 388 MLAV 391
            + V
Sbjct: 133 SMEV 136

>3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V hearing, membrane, synapse, transmembrane, membrane protein; 1.95A {Rattus norvegicus} Length = 144

 Score = 43.1 bits (101), Expect = 8e-05
 Identities = 16/91 (17%), Positives = 40/91 (43%), Gaps = 10/91 (10%)

Query: 4   LKLGVQVVGAHNLLPKDGKGSSSAFVELYFDGQRFRTTIKENDLNPV-WNESFYFNISDA 62
           + L V +     L     +G +    ++ F GQ F + + EN  +   ++E+F + ++ +
Sbjct: 21  MALIVHLKTVSEL-----RGRADRIAKVTFRGQSFYSRVLENCEDVADFDETFRWPVASS 75

Query: 63  -SKLHYLTLEAYIYNNIGDTNSRSFLGKVCL 92
             +   L ++ + Y+ +    S   +G   +
Sbjct: 76  IDRNEVLEIQIFNYSKVF---SNKLIGTFRM 103

>3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V hearing, membrane, synapse, transmembrane, membrane protein; 1.95A {Rattus norvegicus} Length = 144

 Score = 40.4 bits (94), Expect = 6e-04
 Identities = 17/142 (11%), Positives = 47/142 (33%), Gaps = 23/142 (16%)

Query: 437 RVNVVEAQDLVPTEKNHFPDVYVKAQIGNQVLKTKICQARTLSAVWNEDLLFVAAEPFE- 495
            V++    +L         D   K     Q   +++ +     A ++E   +  A   + 
Sbjct: 24  IVHLKTVSELRGR-----ADRIAKVTFRGQSFYSRVLENCEDVADFDETFRWPVASSIDR 78

Query: 496 -DHLVLTVEDRVGPGKDEIIGRVIIPLSAIEKRADERIIHSRWFNLEKPVAVDVDQLKKE 554
            + L + + +      +++IG   + L         +++      +        D L  +
Sbjct: 79  NEVLEIQIFNYSKVFSNKLIGTFRMVLQ--------KVVEENRVEVS-------DTLIDD 123

Query: 555 KFSSRIHLRVCLDGGYHVLDES 576
             ++ I   + ++  Y   D +
Sbjct: 124 N-NAIIKTSLSMEVRYQAADGT 144

>3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus} Length = 483

 Score = 51.1 bits (121), Expect = 1e-06
 Identities = 18/118 (15%), Positives = 37/118 (31%), Gaps = 13/118 (11%)

Query: 272 LYVRVVKARELPAMDLTGSIDPFVEVKIGNYK----GITKHYEKNQNPQWHQVFAFSRDR 327
           L + +++ARELP          + E+ + +                   W + F F+   
Sbjct: 13  LKLWIIEARELPPKK-----RYYCELCLDDMLYARTTSKPRSASGDTVFWGEHFEFNNLP 67

Query: 328 MQASVLEVVIKDKDLV----KDDFVGIVRFDINEVPLRVPPDSPLAPEWYRLEDKKGE 381
              ++   + +D D      K  +VG+V   +  +  R   +              G 
Sbjct: 68  AVRALRLHLYRDSDKKRKKDKAGYVGLVTVPVATLAGRHFTEQWYPVTLPTGSGGSGG 125

>3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus} Length = 483

 Score = 45.0 bits (105), Expect = 1e-04
 Identities = 20/160 (12%), Positives = 45/160 (28%), Gaps = 11/160 (6%)

Query: 436 VRVNVVEAQDLVPTEKNHFPDVYVKAQIGNQVLKTKICQARTLSA---VWNEDLLFVAAE 492
           +++ ++EA++L P         Y +  + + +      + R+ S     W E   F    
Sbjct: 13  LKLWIIEARELPPK-----KRYYCELCLDDMLYARTTSKPRSASGDTVFWGEHFEFNNLP 67

Query: 493 PFED---HLVLTVEDRVGPGKDEIIGRVIIPLSAIEKRADERIIHSRWFNLEKPVAVDVD 549
                  HL    + +    K   +G V +P++ +  R      +          +  + 
Sbjct: 68  AVRALRLHLYRDSDKKRKKDKAGYVGLVTVPVATLAGRHFTEQWYPVTLPTGSGGSGGMG 127

Query: 550 QLKKEKFSSRIHLRVCLDGGYHVLDESTHYSSDLRPTAKQ 589
                        +         L       S L     +
Sbjct: 128 SGGGGGSGGGSGGKGKGGCPAVRLKARYQTMSILPMELYK 167

>3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus} Length = 483

 Score = 43.4 bits (101), Expect = 3e-04
 Identities = 35/196 (17%), Positives = 62/196 (31%), Gaps = 22/196 (11%)

Query: 598 LELGILNAVGLHPMKTRDGRGTSDTYC-VAKYGHKWVRTRTL---VDNLSPKYNEQYTWE 653
           L+L I+ A  L P            YC +      + RT +        +  + E + + 
Sbjct: 13  LKLWIIEARELPPK--------KRYYCELCLDDMLYARTTSKPRSASGDTVFWGEHFEFN 64

Query: 654 VFDPATVLTVGVFDNSQLGEKSNGNKDLKIGKVRIRISTLETGRIYTHSYPLLVLHPTGV 713
                  L + ++ +S   +K   +K   +G V + ++TL         YP  V  PTG 
Sbjct: 65  NLPAVRALRLHLYRDSD--KKRKKDKAGYVGLVTVPVATLAGRHFTEQWYP--VTLPTGS 120

Query: 714 KKMGELHLAIRFSCTSFANMLYLYSRPLLPKMHYVRPFSIM------QLDMLRHQAVNIV 767
              G +           +        P +      +  SI+      +          ++
Sbjct: 121 GGSGGMGSGGGGGSGGGSGGKGKGGCPAVRLKARYQTMSILPMELYKEFAEYVTNHYRML 180

Query: 768 AARLGRAEPPLRKEVV 783
            A L  A     KE V
Sbjct: 181 CAVLEPALNVKGKEEV 196

>3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus} Length = 483

 Score = 42.7 bits (99), Expect = 6e-04
 Identities = 22/93 (23%), Positives = 32/93 (34%), Gaps = 10/93 (10%)

Query: 5  KLGVQVVGAHNLLPKDGKGSSSAFVELYFDGQ-RFRTTIKE---NDLNPVWNESFYFNIS 60
           L + ++ A  L PK        + EL  D     RTT K    +     W E F FN  
Sbjct: 12 VLKLWIIEARELPPKK-----RYYCELCLDDMLYARTTSKPRSASGDTVFWGEHFEFNNL 66

Query: 61 DASKLHYLTLEAYIYNNIGDTNSRSFLGKVCLT 93
           A +   L L            +  ++G V + 
Sbjct: 67 PAVRALRLHLYRDSDKKRKKDKA-GYVGLVTVP 98

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	1005
2r83_A	284	Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel	99.97
2r83_A	284	Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel	99.97
1dqv_A	296	Synaptotagmin III; beta sandwich, calcium ION, C2	99.97
1dqv_A	296	Synaptotagmin III; beta sandwich, calcium ION, C2	99.96
3kwu_A	148	MUNC13-1; calcium binding protein, phospholipid bi	99.82
2dmh_A	140	Myoferlin; beta-sandwich, FER-1-like protein 3, mu	99.81
2ep6_A	133	MCTP2 protein; beta sandwich, Ca2+ binding, membra	99.81
2ep6_A	133	MCTP2 protein; beta sandwich, Ca2+ binding, membra	99.8
2fk9_A	157	Protein kinase C, ETA type; ATP-binding, metal-bin	99.8
3kwu_A	148	MUNC13-1; calcium binding protein, phospholipid bi	99.8
2dmh_A	140	Myoferlin; beta-sandwich, FER-1-like protein 3, mu	99.79
3b7y_A	153	E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-	99.79
2fk9_A	157	Protein kinase C, ETA type; ATP-binding, metal-bin	99.79
1wfj_A	136	Putative elicitor-responsive gene; C2 domain, rike	99.79
1wfj_A	136	Putative elicitor-responsive gene; C2 domain, rike	99.79
3m7f_B	176	E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB1	99.78
3b7y_A	153	E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-	99.77
3pyc_A	132	E3 ubiquitin-protein ligase smurf1; phospholipid b	99.77
1gmi_A	136	Protein kinase C, epsilon type; PKC, C2 domain, X-	99.76
1gmi_A	136	Protein kinase C, epsilon type; PKC, C2 domain, X-	99.76
3m7f_B	176	E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB1	99.75
1rlw_A	126	Phospholipase A2, CALB domain; hydrolase, C2 domai	99.75
1rlw_A	126	Phospholipase A2, CALB domain; hydrolase, C2 domai	99.74
2nq3_A	173	Itchy homolog E3 ubiquitin protein ligase; C2 doma	99.74
2z0u_A	155	WW domain-containing protein 1; C2 domain, alterna	99.72
3pyc_A	132	E3 ubiquitin-protein ligase smurf1; phospholipid b	99.72
2bwq_A	129	Regulating synaptic membrane exocytosis protein 2;	99.71
2b3r_A	134	Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA	99.71
2d8k_A	141	Synaptotagmin VII; exocytosis, calcium binding, ly	99.71
1v27_A	141	Regulating synaptic membrane exocytosis protein 2;	99.7
1ugk_A	138	Synaptotagmin IV, KIAA1342; beta sandwich, structu	99.69
2b3r_A	134	Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA	99.69
2d8k_A	141	Synaptotagmin VII; exocytosis, calcium binding, ly	99.69
2nq3_A	173	Itchy homolog E3 ubiquitin protein ligase; C2 doma	99.68
3fdw_A	148	Synaptotagmin-like protein 4; structural genomics,	99.68
3f04_A	143	Synaptotagmin-1; C2A, calcium, cell junction, cyto	99.68
1rsy_A	152	Synaptotagmin I; calcium/phospholipid binding prot	99.68
3fdw_A	148	Synaptotagmin-like protein 4; structural genomics,	99.68
2dmg_A	142	KIAA1228 protein; beta-sandwich, structural genomi	99.67
1rsy_A	152	Synaptotagmin I; calcium/phospholipid binding prot	99.67
1rh8_A	142	Piccolo protein; beta-sandwich, metal binding prot	99.67
3fbk_A	153	RGS3, RGP3, regulator of G-protein signaling 3; al	99.66
1a25_A	149	CALB, protein kinase C (beta); calcium++/phospholi	99.66
3rdl_A	137	Protein kinase C alpha type; protein kinase PKC, t	99.66
3fbk_A	153	RGS3, RGP3, regulator of G-protein signaling 3; al	99.66
1wfm_A	138	Synaptotagmin XIII; C2 domain, exocytosis, neurotr	99.65
2chd_A	142	Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium	99.65
2z0u_A	155	WW domain-containing protein 1; C2 domain, alterna	99.65
2cm5_A	166	Rabphilin-3A; protein transport, zinc-finger, Ca2+	99.65
1wfm_A	138	Synaptotagmin XIII; C2 domain, exocytosis, neurotr	99.65
2bwq_A	129	Regulating synaptic membrane exocytosis protein 2;	99.65
3rdl_A	137	Protein kinase C alpha type; protein kinase PKC, t	99.64
2enp_A	147	B/K protein; C2 type 1,beta sandwich, structural g	99.64
2enp_A	147	B/K protein; C2 type 1,beta sandwich, structural g	99.64
1tjx_A	159	Similar to synaptotagmini/P65; C2B domain, calcium	99.64
1a25_A	149	CALB, protein kinase C (beta); calcium++/phospholi	99.64
2q3x_A	171	Regulating synaptic membrane exocytosis protein 1;	99.63
3f04_A	143	Synaptotagmin-1; C2A, calcium, cell junction, cyto	99.63
3n5a_A	138	Synaptotagmin-7; calcium/phospholipid binding prot	99.63
2q3x_A	171	Regulating synaptic membrane exocytosis protein 1;	99.63
2cjt_A	131	UNC-13 homolog A, MUNC13-1; phorbol-ester binding,	99.63
1tjx_A	159	Similar to synaptotagmini/P65; C2B domain, calcium	99.63
3n5a_A	138	Synaptotagmin-7; calcium/phospholipid binding prot	99.62
1v27_A	141	Regulating synaptic membrane exocytosis protein 2;	99.62
1w15_A	153	Synaptotagmin IV; metal binding protein, endocytos	99.62
1rh8_A	142	Piccolo protein; beta-sandwich, metal binding prot	99.62
2cm5_A	166	Rabphilin-3A; protein transport, zinc-finger, Ca2+	99.62
2cjt_A	131	UNC-13 homolog A, MUNC13-1; phorbol-ester binding,	99.61
1ugk_A	138	Synaptotagmin IV, KIAA1342; beta sandwich, structu	99.6
2chd_A	142	Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium	99.59
2dmg_A	142	KIAA1228 protein; beta-sandwich, structural genomi	99.59
2cjs_A	167	UNC-13 homolog A, MUNC13-1; neurotransmitter trans	99.57
3l9b_A	144	Otoferlin; C2-domain, beta-sheets, cell membrane,	99.57
3l9b_A	144	Otoferlin; C2-domain, beta-sheets, cell membrane,	99.56
1w15_A	153	Synaptotagmin IV; metal binding protein, endocytos	99.55
2cjs_A	167	UNC-13 homolog A, MUNC13-1; neurotransmitter trans	99.53
3nsj_A	540	Perforin-1; pore forming protein, immune system; H	99.53
3jzy_A	510	Intersectin 2; C2 domain, structural genomics cons	99.51
3nsj_A	540	Perforin-1; pore forming protein, immune system; H	99.47
1djx_A	624	PLC-D1, phosphoinositide-specific phospholipase C,	99.45
1djx_A	624	PLC-D1, phosphoinositide-specific phospholipase C,	99.45
3jzy_A	510	Intersectin 2; C2 domain, structural genomics cons	99.43
3bxj_A	483	RAS GTPase-activating protein syngap; GTPase activ	99.42
1cjy_A	749	CPLA2, protein (cytosolic phospholipase A2); lipid	99.36
3bxj_A	483	RAS GTPase-activating protein syngap; GTPase activ	99.29
1cjy_A	749	CPLA2, protein (cytosolic phospholipase A2); lipid	99.28
3ohm_B	885	1-phosphatidylinositol-4,5-bisphosphate phosphodi	99.12
3qr0_A	816	Phospholipase C-beta (PLC-beta); PH domain, EF han	99.11
3qr0_A	816	Phospholipase C-beta (PLC-beta); PH domain, EF han	99.1
3pfq_A	674	PKC-B, PKC-beta, protein kinase C beta type; phosp	99.08
3ohm_B	885	1-phosphatidylinositol-4,5-bisphosphate phosphodi	99.07
2zkm_X	799	1-phosphatidylinositol-4,5-bisphosphate phosphodie	99.07
3pfq_A	674	PKC-B, PKC-beta, protein kinase C beta type; phosp	99.04
2zkm_X	799	1-phosphatidylinositol-4,5-bisphosphate phosphodie	99.03
1yrk_A	126	NPKC-delta, protein kinase C, delta type; C2 domai	98.97
2enj_A	138	NPKC-theta, protein kinase C theta type; beta-sand	98.97
1yrk_A	126	NPKC-delta, protein kinase C, delta type; C2 domai	98.66
2enj_A	138	NPKC-theta, protein kinase C theta type; beta-sand	98.61
3l4c_A	220	Dedicator of cytokinesis protein 1; DOCK180, DOCK1	88.74
2yrb_A	156	Protein fantom; beta sandwich, NPPSFA, national pr	87.17
2wxf_A	940	Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca	84.89
2yrb_A	156	Protein fantom; beta sandwich, NPPSFA, national pr	84.11
3hhm_A	1091	Phosphatidylinositol-4,5-bisphosphate 3-kinase cat	81.54

>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2

Probab=99.97  E-value=5.3e-30  Score=279.04  Aligned_cols=243  Identities=26%  Similarity=0.392  Sum_probs=200.0

Q ss_pred             cceeeeccccceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC---eeeeeeeecCCCCCeeeeEEEEeecC--CCCcE
Q 045058          258 KTASTYDLVERMYFLYVRVVKARELPAMDLTGSIDPFVEVKIGN---YKGITKHYEKNQNPQWHQVFAFSRDR--MQASV  332 (1005)
Q Consensus       258 ~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~~---~~~kT~~~~~~~nP~wne~f~f~~~~--~~~~~  332 (1005)
                      .++..|+.  ..+.|.|+|++|++|+.++.+|.+||||++++++   ..++|+++++++||.|||+|.|.+..  +....
T Consensus         9 ~~~l~y~~--~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~T~~~~~~~nP~wne~f~f~v~~~~~~~~~   86 (284)
T 2r83_A            9 QYSLDYDF--QNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELAGKT   86 (284)
T ss_dssp             EEEEEEET--TTTEEEEEEEEEECCCCCSSSSSCCEEEEEEEETCTTSCEECCCCCSCSSCEEEEEEEECCCGGGCTTCE
T ss_pred             EEEEEEEC--CCCEEEEEEEEeeCCCCCCCCCCCCeEEEEEEEcCCCceEeCCcccCCCCCeeCceEEEEechHHhCcCE
Confidence            34555544  4589999999999999999999999999999964   46789999999999999999998753  34579


Q ss_pred             EEEEEEeCC-CCCCceeEEEEEEceecCCCCCCCCCCCCeEEEeecCCCC--ccceEEEEEEEEeccCCcccccccCCCC
Q 045058          333 LEVVIKDKD-LVKDDFVGIVRFDINEVPLRVPPDSPLAPEWYRLEDKKGE--KIKGELMLAVWIGTQADEAFSDAWHSDA  409 (1005)
Q Consensus       333 l~v~V~d~~-~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~--~~~G~i~l~~~~~~~~d~~~~~~~~~~~  409 (1005)
                      |.|+|||++ ++++++||++.++|.++..+     .....|++|....+.  ...|+|.+++.|.+.             
T Consensus        87 l~~~V~d~d~~~~~~~lG~~~i~l~~l~~~-----~~~~~w~~L~~~~~~~~~~~G~i~l~l~~~p~-------------  148 (284)
T 2r83_A           87 LVMAVYDFDRFSKHDIIGEFKVPMNTVDFG-----HVTEEWRDLQSAEKEEQEKLGDICFSLRYVPT-------------  148 (284)
T ss_dssp             EEEEEEECCSSSCCCEEEEEEEEGGGCCCS-----SCEEEEEECBCCSSCCCCCCCEEEEEEEEETT-------------
T ss_pred             EEEEEEECCCCCCCceeEEEEEcchhcccC-----CcceeEEEeeccccccccccccEEEEEEecCc-------------
Confidence            999999999 77899999999999999764     356789999876432  257999998876431             


Q ss_pred             CCCCCCCCccccccccccccCCceEEEEEEEEEeeeCCCCCCCCCCCcEEEEEEC--C---eEEeeecccCCCCCccccc
Q 045058          410 ATPVDSTPAITAVIRSKVYHSPRLWYVRVNVVEAQDLVPTEKNHFPDVYVKAQIG--N---QVLKTKICQARTLSAVWNE  484 (1005)
Q Consensus       410 ~~~~~~~~~~~~~~r~~~~~~~~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~lg--~---~~~kT~~~~~~t~~P~w~e  484 (1005)
                                             .+.|.|.|++|+||+.++.++.+||||+++++  +   ..++|++++ ++.||.|||
T Consensus       149 -----------------------~~~l~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~~kT~v~~-~t~nP~wne  204 (284)
T 2r83_A          149 -----------------------AGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKK-NTLNPYYNE  204 (284)
T ss_dssp             -----------------------TTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCCCC-SCSSCEEEE
T ss_pred             -----------------------CCceEEEEEEeECCCCcCCCCCcCeEEEEEEEeCCcEeeeeccceec-CCCCCEEce
Confidence                                   23799999999999999999999999999993  2   467898886 999999999


Q ss_pred             EEEEEeeCCC--CCeEEEEEEeccCCCCCceeEEEEEcccccccc---c-----ccccccceeEEccCCC
Q 045058          485 DLLFVAAEPF--EDHLVLTVEDRVGPGKDEIIGRVIIPLSAIEKR---A-----DERIIHSRWFNLEKPV  544 (1005)
Q Consensus       485 ~f~f~v~~~~--~~~l~i~V~d~d~~~~d~~iG~~~i~l~~l~~~---~-----~~~~~~~~w~~L~~~~  544 (1005)
                      .|.|.+..+.  ...|.|+|||++.++++++||++.|+++.+...   +     ..+....+||+|.+..
T Consensus       205 ~f~f~v~~~~l~~~~l~i~V~d~d~~~~~~~iG~~~i~l~~~~~~~~~w~~~~~~~~~~~~~W~~L~~~~  274 (284)
T 2r83_A          205 SFSFEVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQWHTLQVEE  274 (284)
T ss_dssp             EEEEECCTTTGGGEEEEEEEEECCSSSCCCEEEEEEEETTCCHHHHHHHHHHHHSTTSCEEEEEECBCHH
T ss_pred             eEEEeCCHHHhCceEEEEEEEeCCCCCCCcEEEEEEECCCCCCcHHHHHHHHHHCCCCchheeeecCCcc
Confidence            9999986552  447999999999999999999999999864321   1     1234567999998754

>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2

Probab=99.97  E-value=1.8e-29  Score=274.90  Aligned_cols=228  Identities=26%  Similarity=0.365  Sum_probs=186.8

Q ss_pred             EEEEEEEEeeeCCCCCCCCCCCcEEEEEEC---CeEEeeecccCCCCCcccccEEEEEeeCC--CCCeEEEEEEeccCCC
Q 045058          435 YVRVNVVEAQDLVPTEKNHFPDVYVKAQIG---NQVLKTKICQARTLSAVWNEDLLFVAAEP--FEDHLVLTVEDRVGPG  509 (1005)
Q Consensus       435 ~L~V~v~~a~~L~~~d~~~~~dpyv~v~lg---~~~~kT~~~~~~t~~P~w~e~f~f~v~~~--~~~~l~i~V~d~d~~~  509 (1005)
                      .|.|+|++|+||+.++.++.+||||++.++   .+.++|++++ ++.||.|||.|.|.+...  ....|.|+|||++.++
T Consensus        20 ~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~T~~~~-~~~nP~wne~f~f~v~~~~~~~~~l~~~V~d~d~~~   98 (284)
T 2r83_A           20 QLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHR-KTLNPVFNEQFTFKVPYSELAGKTLVMAVYDFDRFS   98 (284)
T ss_dssp             EEEEEEEEEECCCCCSSSSSCCEEEEEEEETCTTSCEECCCCC-SCSSCEEEEEEEECCCGGGCTTCEEEEEEEECCSSS
T ss_pred             EEEEEEEEeeCCCCCCCCCCCCeEEEEEEEcCCCceEeCCccc-CCCCCeeCceEEEEechHHhCcCEEEEEEEECCCCC
Confidence            799999999999999999999999999994   3578999996 899999999999998653  4578999999999999


Q ss_pred             CCceeEEEEEcccccccccccccccceeEEccCCCccccccccccccccceeEEEeecCCccccCCCccccCCCcccccc
Q 045058          510 KDEIIGRVIIPLSAIEKRADERIIHSRWFNLEKPVAVDVDQLKKEKFSSRIHLRVCLDGGYHVLDESTHYSSDLRPTAKQ  589 (1005)
Q Consensus       510 ~d~~iG~~~i~l~~l~~~~~~~~~~~~w~~L~~~~~~~~~~~~~~~~~~~i~l~~~l~~~~~~~~~~~~~~~d~~~~~~~  589 (1005)
                      ++++||++.++|.++....    ....|++|.......      ....|.+.+.+..                       
T Consensus        99 ~~~~lG~~~i~l~~l~~~~----~~~~w~~L~~~~~~~------~~~~G~i~l~l~~-----------------------  145 (284)
T 2r83_A           99 KHDIIGEFKVPMNTVDFGH----VTEEWRDLQSAEKEE------QEKLGDICFSLRY-----------------------  145 (284)
T ss_dssp             CCCEEEEEEEEGGGCCCSS----CEEEEEECBCCSSCC------CCCCCEEEEEEEE-----------------------
T ss_pred             CCceeEEEEEcchhcccCC----cceeEEEeecccccc------ccccccEEEEEEe-----------------------
Confidence            9999999999999987542    467899998764311      1123555544432                       


Q ss_pred             cCCCcceEEEEEEEEecCCCCCCCCCCCCCCCcEEEEEEC--C---EEEEeeeccCCCCceeccEEEEEEeCC---CceE
Q 045058          590 LWRPSIGILELGILNAVGLHPMKTRDGRGTSDTYCVAKYG--H---KWVRTRTLVDNLSPKYNEQYTWEVFDP---ATVL  661 (1005)
Q Consensus       590 ~~~~~~g~l~v~i~~a~~L~~~~~~~~~~~~dpyv~~~~g--~---~~~~T~~~~~t~nP~wne~f~~~v~~~---~~~l  661 (1005)
                        .+..|.|.|.|++|+||++++   ..|.+||||++.+.  +   ...+|+++++++||+|||.|.|.+..+   ...|
T Consensus       146 --~p~~~~l~v~v~~a~~L~~~d---~~~~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l  220 (284)
T 2r83_A          146 --VPTAGKLTVVILEAKNLKKMD---VGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQV  220 (284)
T ss_dssp             --ETTTTEEEEEEEEEESCCCCS---TTSCCCEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEEEECCTTTGGGEEE
T ss_pred             --cCcCCceEEEEEEeECCCCcC---CCCCcCeEEEEEEEeCCcEeeeeccceecCCCCCEEceeEEEeCCHHHhCceEE
Confidence              134589999999999999764   47889999999983  3   357999999999999999999999754   3579


Q ss_pred             EEEEEeCCCcCCCCCCCCCcccEEEEEEccccc------------CCCEEeeeEeeee
Q 045058          662 TVGVFDNSQLGEKSNGNKDLKIGKVRIRISTLE------------TGRIYTHSYPLLV  707 (1005)
Q Consensus       662 ~i~v~d~~~~~~~~~~~~d~~lG~~~i~l~~l~------------~~~~~~~~~~L~~  707 (1005)
                      .|+|||++.++      ++++||.+.|+++.+.            .+....+||+|..
T Consensus       221 ~i~V~d~d~~~------~~~~iG~~~i~l~~~~~~~~~w~~~~~~~~~~~~~W~~L~~  272 (284)
T 2r83_A          221 VVTVLDYDKIG------KNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQWHTLQV  272 (284)
T ss_dssp             EEEEEECCSSS------CCCEEEEEEEETTCCHHHHHHHHHHHHSTTSCEEEEEECBC
T ss_pred             EEEEEeCCCCC------CCcEEEEEEECCCCCCcHHHHHHHHHHCCCCchheeeecCC
Confidence            99999999876      8999999999998632            3456678999863

>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A

Probab=99.97  E-value=4.3e-30  Score=280.55  Aligned_cols=240  Identities=24%  Similarity=0.376  Sum_probs=189.6

Q ss_pred             CcEEEEEEEEeecCCCCCCCCCCCcEEEEEE---CCeEeeccccCCCCCCceeeEEEEEeccCccccceEEEEEEEeCCC
Q 045058            3 NLKLGVQVVGAHNLLPKDGKGSSSAFVELYF---DGQRFRTTIKENDLNPVWNESFYFNISDASKLHYLTLEAYIYNNIG   79 (1005)
Q Consensus         3 ~~~l~V~v~~a~~L~~~d~~g~~dpyv~v~~---~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~   79 (1005)
                      .+.|.|+|++|+||+.+|..|.+||||+|++   ++++++|+++++++||+|||+|.|.+...+ ++...|.|+|||++.
T Consensus        19 ~~~L~v~v~~a~~L~~~d~~g~~dPyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~-l~~~~L~~~V~d~d~   97 (296)
T 1dqv_A           19 SDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPLAE-LAQRKLHFSVYDFDR   97 (296)
T ss_dssp             SCEEEEEEEEEECCCCCSTTSCCCEEEEEECTTSTTSCEECCCCCSCSSCEEEEEEEEECCGGG-GSSCCCEEEEEECCS
T ss_pred             CCEEEEEEEEeECCCCcCCCCCcCeEEEEEEEcCCCeeEeCCccCCCCCCcEeeEEEEEecHHH-hcCCEEEEEEEEcCC
Confidence            4789999999999999999999999999999   456899999999999999999999985432 445689999999964


Q ss_pred             CCCCCcccEEEEEe-CCcccCCCCceeeeEecccCCCcceeeeEEEEEEEEecCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 045058           80 DTNSRSFLGKVCLT-GNSFVPLSDSVVLHYPLEKRGIFSHVRGELGLKVYITDDPSIKSSTPLPAAETFSTKDPSITHTH  158 (1005)
Q Consensus        80 ~~~~d~~lG~~~i~-l~~l~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (1005)
                       .++|++||++.++ +.++.........|++|..........|+|.+++.+.+                           
T Consensus        98 -~~~~~~iG~~~i~~l~~~~~~~~~~~~w~~L~~~~~~~~~~G~i~vsl~y~~---------------------------  149 (296)
T 1dqv_A           98 -FSRHDLIGQVVLDNLLELAEQPPDRPLWRDILEGGSEKADLGELNFSLCYLP---------------------------  149 (296)
T ss_dssp             -SSCCCEEEEEECCCTTGGGSSCSSCCCCEECBCCSSCCSCCCEEEEEEEEET---------------------------
T ss_pred             -CCCCceEEEEEeccccccccCCccceeeeccccccccccccceEEEEEEecc---------------------------
Confidence             5689999999996 55555433344579999765444445688877764432                           


Q ss_pred             CCCCCCCCCCCcccccccccCCCCCCCCCCCCCCCCCcccccCCCCccccccccCCCCCCcceeecccCCCCCCCCcccc
Q 045058          159 AQPVANPVTGDTVESRHTFHHLPNPNHHQHHHQHHPSTTVVNRHVPKYEADEMKSEPQPPKLVHMYSAASSQSADYALKE  238 (1005)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (1005)
                                                                                                      
T Consensus       150 --------------------------------------------------------------------------------  149 (296)
T 1dqv_A          150 --------------------------------------------------------------------------------  149 (296)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cCCCCCCCcccCceeeccccceeeeccccceeEEEEEEEEeecCCCCCCCCCCCcEEEEEEC--C---eeeeeeeecCCC
Q 045058          239 TSPYLGGGKVVGGRVIHADKTASTYDLVERMYFLYVRVVKARELPAMDLTGSIDPFVEVKIG--N---YKGITKHYEKNQ  313 (1005)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~--~---~~~kT~~~~~~~  313 (1005)
                                                   ..+.|.|+|++|++|+.++.+|.+||||++++.  +   .+++|++++++.
T Consensus       150 -----------------------------~~~~l~v~v~~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~~~t~  200 (296)
T 1dqv_A          150 -----------------------------TAGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTL  200 (296)
T ss_dssp             -----------------------------TTTEEEEEEEEEESCCCCSSSSCCCEEEEECCCTTCCTTSCEECCCCCSCS
T ss_pred             -----------------------------ccceeEEEEEEeecCCccCCCCCCCcEEEEEEEeCCcCccceecceecCCC
Confidence                                         014688999999999999999999999999996  2   457999999999


Q ss_pred             CCeeeeEEEEeecCC--CCcEEEEEEEeCC-CCCCceeEEEEEEceecCC-C-------CCCCCCCCCeEEEeecCCC
Q 045058          314 NPQWHQVFAFSRDRM--QASVLEVVIKDKD-LVKDDFVGIVRFDINEVPL-R-------VPPDSPLAPEWYRLEDKKG  380 (1005)
Q Consensus       314 nP~wne~f~f~~~~~--~~~~l~v~V~d~~-~~~d~~lG~~~i~l~~l~~-~-------~~~~~~~~~~w~~L~~~~~  380 (1005)
                      ||.|||.|.|.+...  ....|.|+|||++ ++++++||++.+++..+.. +       .........+|+.|....+
T Consensus       201 nP~wne~f~f~v~~~~l~~~~L~i~V~d~d~~~~~~~iG~~~i~l~~~~~~~~~~W~~~~~~~~~~~~~w~~L~~~~~  278 (296)
T 1dqv_A          201 NPTYNEALVFDVAPESVENVGLSIAVVDYDCIGHNEVIGVCRVGPEAADPHGREHWAEMLANPRKPVEHWHQLVEEKT  278 (296)
T ss_dssp             SCEEEECCCCCCCSGGGGSCCCCCEEEECCSSSCCEEEEECCCSSCTTCHHHHHHHHTSSSSSSSCSCSCCCCBBCC-
T ss_pred             CCeECceEEEEcCHHHccCcEEEEEEEeCCCCCCCceEEEEEECCccCCchhHHHHHHHHhCCCCceeEeeeccCccc
Confidence            999999999987543  3457999999999 7889999999999987632 0       0001234567888776554

>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A

Probab=99.96  E-value=1.4e-29  Score=276.48  Aligned_cols=244  Identities=28%  Similarity=0.373  Sum_probs=195.1

Q ss_pred             cceeeeccccceeEEEEEEEEeecCCCCCCCCCCCcEEEEEE---CCeeeeeeeecCCCCCeeeeEEEEeec--CCCCcE
Q 045058          258 KTASTYDLVERMYFLYVRVVKARELPAMDLTGSIDPFVEVKI---GNYKGITKHYEKNQNPQWHQVFAFSRD--RMQASV  332 (1005)
Q Consensus       258 ~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~---~~~~~kT~~~~~~~nP~wne~f~f~~~--~~~~~~  332 (1005)
                      .++..|+.  ..+.|.|+|++|++|+.++.+|.+||||++++   +.+.++|+++++++||.|||+|.|.+.  ++....
T Consensus        10 ~~~l~y~~--~~~~L~v~v~~a~~L~~~d~~g~~dPyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~   87 (296)
T 1dqv_A           10 SFALRYLY--GSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPLAELAQRK   87 (296)
T ss_dssp             EEEEECCS--SSCEEEEEEEEEECCCCCSTTSCCCEEEEEECTTSTTSCEECCCCCSCSSCEEEEEEEEECCGGGGSSCC
T ss_pred             EEEEEEeC--CCCEEEEEEEEeECCCCcCCCCCcCeEEEEEEEcCCCeeEeCCccCCCCCCcEeeEEEEEecHHHhcCCE
Confidence            44555544  45899999999999999999999999999999   446789999999999999999999975  334568


Q ss_pred             EEEEEEeCC-CCCCceeEEEEEE-ceecCCCCCCCCCCCCeEEEeecCCCCc-cceEEEEEEEEeccCCcccccccCCCC
Q 045058          333 LEVVIKDKD-LVKDDFVGIVRFD-INEVPLRVPPDSPLAPEWYRLEDKKGEK-IKGELMLAVWIGTQADEAFSDAWHSDA  409 (1005)
Q Consensus       333 l~v~V~d~~-~~~d~~lG~~~i~-l~~l~~~~~~~~~~~~~w~~L~~~~~~~-~~G~i~l~~~~~~~~d~~~~~~~~~~~  409 (1005)
                      |.|+|||++ ++++++||++.++ +.++...    ......|+.|....+.. ..|+|.+++.|.+.             
T Consensus        88 L~~~V~d~d~~~~~~~iG~~~i~~l~~~~~~----~~~~~~w~~L~~~~~~~~~~G~i~vsl~y~~~-------------  150 (296)
T 1dqv_A           88 LHFSVYDFDRFSRHDLIGQVVLDNLLELAEQ----PPDRPLWRDILEGGSEKADLGELNFSLCYLPT-------------  150 (296)
T ss_dssp             CEEEEEECCSSSCCCEEEEEECCCTTGGGSS----CSSCCCCEECBCCSSCCSCCCEEEEEEEEETT-------------
T ss_pred             EEEEEEEcCCCCCCceEEEEEeccccccccC----CccceeeeccccccccccccceEEEEEEeccc-------------
Confidence            999999999 7889999999996 4444321    12356799998754332 57999999886431             


Q ss_pred             CCCCCCCCccccccccccccCCceEEEEEEEEEeeeCCCCCCCCCCCcEEEEEEC--C---eEEeeecccCCCCCccccc
Q 045058          410 ATPVDSTPAITAVIRSKVYHSPRLWYVRVNVVEAQDLVPTEKNHFPDVYVKAQIG--N---QVLKTKICQARTLSAVWNE  484 (1005)
Q Consensus       410 ~~~~~~~~~~~~~~r~~~~~~~~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~lg--~---~~~kT~~~~~~t~~P~w~e  484 (1005)
                                             .+.|.|.|++|+||+.++..|.+||||+++++  +   .+++|++++ ++.||.|||
T Consensus       151 -----------------------~~~l~v~v~~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~~-~t~nP~wne  206 (296)
T 1dqv_A          151 -----------------------AGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKK-NTLNPTYNE  206 (296)
T ss_dssp             -----------------------TTEEEEEEEEEESCCCCSSSSCCCEEEEECCCTTCCTTSCEECCCCC-SCSSCEEEE
T ss_pred             -----------------------cceeEEEEEEeecCCccCCCCCCCcEEEEEEEeCCcCccceecceec-CCCCCeECc
Confidence                                   23799999999999999999999999999995  2   578999996 999999999


Q ss_pred             EEEEEeeCC--CCCeEEEEEEeccCCCCCceeEEEEEcccccccc----c-----ccccccceeEEccCCC
Q 045058          485 DLLFVAAEP--FEDHLVLTVEDRVGPGKDEIIGRVIIPLSAIEKR----A-----DERIIHSRWFNLEKPV  544 (1005)
Q Consensus       485 ~f~f~v~~~--~~~~l~i~V~d~d~~~~d~~iG~~~i~l~~l~~~----~-----~~~~~~~~w~~L~~~~  544 (1005)
                      .|.|.+...  ....|.|+|||++.++++++||++.|++..+...    |     ..+....+|++|....
T Consensus       207 ~f~f~v~~~~l~~~~L~i~V~d~d~~~~~~~iG~~~i~l~~~~~~~~~~W~~~~~~~~~~~~~w~~L~~~~  277 (296)
T 1dqv_A          207 ALVFDVAPESVENVGLSIAVVDYDCIGHNEVIGVCRVGPEAADPHGREHWAEMLANPRKPVEHWHQLVEEK  277 (296)
T ss_dssp             CCCCCCCSGGGGSCCCCCEEEECCSSSCCEEEEECCCSSCTTCHHHHHHHHTSSSSSSSCSCSCCCCBBCC
T ss_pred             eEEEEcCHHHccCcEEEEEEEeCCCCCCCceEEEEEECCccCCchhHHHHHHHHhCCCCceeEeeeccCcc
Confidence            999998654  2457999999999999999999999999876431    1     0123455677766554

>3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} SCOP: b.7.1.0 PDB: 3kwt_A*

Probab=99.82  E-value=3e-19  Score=173.26  Aligned_cols=122  Identities=29%  Similarity=0.461  Sum_probs=107.2

Q ss_pred             CCcEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEeeccccCCCCCCceeeEEEEEeccCccccceEEEEEEEeCCCC-
Q 045058            2 RNLKLGVQVVGAHNLLPKDGKGSSSAFVELYFDGQRFRTTIKENDLNPVWNESFYFNISDASKLHYLTLEAYIYNNIGD-   80 (1005)
Q Consensus         2 ~~~~l~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~~-   80 (1005)
                      ..+.|+|+|++|+||+.+|..|.+||||++++++++++|+++++++||+|||+|.|.+...+    ..|.|+|||++.. 
T Consensus        15 ~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~~----~~l~~~v~d~d~~~   90 (148)
T 3kwu_A           15 WSAKISITVVCAQGLQAKDKTGSSDPYVTVQVGKTKKRTKTIYGNLNPVWEENFHFECHNSS----DRIKVRVLDEDDDI   90 (148)
T ss_dssp             CCEEEEEEEEEEESCCCCSTTSCCCEEEEEEETTEEEECCCCCSCSSCEEEEEEEEEECSTT----CEEEEEEEECCCSH
T ss_pred             cccEEEEEEEeeeCCCCCCCCCCcCeEEEEEECCEEEECCccCCCCCCCcccEEEEEecCCC----CEEEEEEEECCCCc
Confidence            35899999999999999999999999999999999999999999999999999999997654    5899999999643 


Q ss_pred             ---------CCCCcccEEEEEeCCcccCCCCceeeeEecccCCCcceeeeEEEEEEEEe
Q 045058           81 ---------TNSRSFLGKVCLTGNSFVPLSDSVVLHYPLEKRGIFSHVRGELGLKVYIT  130 (1005)
Q Consensus        81 ---------~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~~  130 (1005)
                               .++|++||++.|++.++.   .....||+|.+++..+..+|+|+|++.+.
T Consensus        91 ~~~~~~~~~~~~~~~lG~~~i~l~~l~---~~~~~w~~L~~~~~~~~~~G~i~l~l~~e  146 (148)
T 3kwu_A           91 KSRVKQRFKRESDDFLGQTIIEVRTLS---GEMDVWYNLDKRTDKSAVSGAIRLHISVE  146 (148)
T ss_dssp             HHHHHTTTSSCSSEEEEEEEEEGGGCC---SEEEEEEECBCSSTTCCCCCEEEEEEEEE
T ss_pred             cccccccccCCCCccEEEEEEEHHHCc---CCCCEEEEcccCCCCCCCceEEEEEEEEE
Confidence                     258999999999999983   23458999998876667889999999875

>2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.81  E-value=5.2e-19  Score=169.87  Aligned_cols=126  Identities=19%  Similarity=0.236  Sum_probs=106.8

Q ss_pred             CcEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEeeccccCCCCCCceeeEEEEEeccCccccceEEEEEEEeCCCCCC
Q 045058            3 NLKLGVQVVGAHNLLPKDGKGSSSAFVELYFDGQRFRTTIKENDLNPVWNESFYFNISDASKLHYLTLEAYIYNNIGDTN   82 (1005)
Q Consensus         3 ~~~l~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~~~~   82 (1005)
                      .+.|.|+|++|+||+.++. |.+||||+|++++++++|+++++++||+|||+|.|.+...+......|.|+|||++. .+
T Consensus         6 ~g~L~v~v~~a~~L~~~~~-g~~dpyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~~~l~i~V~d~d~-~~   83 (140)
T 2dmh_A            6 SGMLRVIVESASNIPKTKF-GKPDPIVSVIFKDEKKKTKKVDNELNPVWNEILEFDLRGIPLDFSSSLGIIVKDFET-IG   83 (140)
T ss_dssp             CCEEEEEEEEEESCCCCSS-SCCCEEEEEECSSCEEECCCCCSCSSCEEEEEEEEECSSCCCCTTCEEEEEEEETTC-SS
T ss_pred             CcEEEEEEEEeeCCCCCCC-CCCCeEEEEEECCEeEEeeeecCCCCCccCcEEEEEecccccCCCCEEEEEEEECCC-CC
Confidence            4799999999999999998 999999999999999999999999999999999999975432235789999999954 56


Q ss_pred             CCcccEEEEEeCCcccCCCCceeeeEe---cccCCCcceeeeEEEEEEEEecC
Q 045058           83 SRSFLGKVCLTGNSFVPLSDSVVLHYP---LEKRGIFSHVRGELGLKVYITDD  132 (1005)
Q Consensus        83 ~d~~lG~~~i~l~~l~~~~~~~~~w~~---L~~~~~~~~~~G~i~l~~~~~~~  132 (1005)
                      +|++||++.|++.++..... ...|++   |.+... ...+|+|++++.|.+.
T Consensus        84 ~~~~lG~~~i~l~~l~~~~~-~~~w~~l~~l~~~~~-~~~~G~l~l~~~~~p~  134 (140)
T 2dmh_A           84 QNKLIGTATVALKDLTGDQS-RSLPYKLISLLNEKG-QDTGATIDLVIGYDPP  134 (140)
T ss_dssp             SCCCCEEEEEEGGGTCSSSC-EEEEEEEEEEECTTC-CEEEEEEEEEEEECCC
T ss_pred             CCceEEEEEEEHHHhccCCC-ceeEEeeeeccCCCC-CCCCCEEEEEEEEECC
Confidence            89999999999999876554 357987   655443 2568999999999873

>2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1

Probab=99.81  E-value=1.1e-19  Score=172.72  Aligned_cols=122  Identities=28%  Similarity=0.452  Sum_probs=108.4

Q ss_pred             CcceEEEEEEEEecCCCCCCCCCCCCCCCcEEEEEECCEEEEeeeccCCCCceeccEEEEEEeCCCceEEEEEEeCCCcC
Q 045058          593 PSIGILELGILNAVGLHPMKTRDGRGTSDTYCVAKYGHKWVRTRTLVDNLSPKYNEQYTWEVFDPATVLTVGVFDNSQLG  672 (1005)
Q Consensus       593 ~~~g~l~v~i~~a~~L~~~~~~~~~~~~dpyv~~~~g~~~~~T~~~~~t~nP~wne~f~~~v~~~~~~l~i~v~d~~~~~  672 (1005)
                      ...|.|+|+|++|+||++++   ..|.+||||++.++++.+||+++++++||+|||+|.|++.++...|.|+|||++.++
T Consensus        10 ~~~~~L~v~v~~a~~L~~~d---~~g~~dpyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~l~i~V~d~d~~~   86 (133)
T 2ep6_A           10 KDVGILQVKVLKAADLLAAD---FSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFPIKDIHDVLEVTVFDEDGDK   86 (133)
T ss_dssp             CCSEEEEEEEEEEESCCCSS---SSSCCCEEEEEEETTEEEECCCCSSCSSCCCCEEEEEEESCTTCEEEEEEEEEETTE
T ss_pred             CCceEEEEEEEeeECCCCCC---CCCCcCeEEEEEECCEEEEeeeecCCCCCccccEEEEEecCCCCEEEEEEEECCCCC
Confidence            56799999999999999754   578899999999999999999999999999999999999988889999999999766


Q ss_pred             CCCCCCCCcccEEEEEEcccccCCCEEeeeEeeeecCCCCCceeeEEEEEEEEe
Q 045058          673 EKSNGNKDLKIGKVRIRISTLETGRIYTHSYPLLVLHPTGVKKMGELHLAIRFS  726 (1005)
Q Consensus       673 ~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~G~i~l~~~~~  726 (1005)
                            +|++||.+.|+|.++..+.  .+||+|......+ ...|+|+|+++|.
T Consensus        87 ------~~~~lG~~~i~l~~l~~~~--~~w~~L~~~~~~~-~~~G~i~l~i~~~  131 (133)
T 2ep6_A           87 ------PPDFLGKVAIPLLSIRDGQ--PNCYVLKNKDLEQ-AFKGVIYLEMDLI  131 (133)
T ss_dssp             ------EEEECCBCEEEGGGCCSSC--CEECCCBCSCTTS-CCSSEEEEEEEEE
T ss_pred             ------CCCeeEEEEEEHHHccCCC--ceEEEeecCCCCC-ccceEEEEEEEEE
Confidence                  7999999999999998776  5899998655443 3569999999984

>2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1

Probab=99.80  E-value=1.9e-19  Score=171.18  Aligned_cols=122  Identities=29%  Similarity=0.389  Sum_probs=107.3

Q ss_pred             CCcEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEeeccccCCCCCCceeeEEEEEeccCccccceEEEEEEEeCCCCC
Q 045058            2 RNLKLGVQVVGAHNLLPKDGKGSSSAFVELYFDGQRFRTTIKENDLNPVWNESFYFNISDASKLHYLTLEAYIYNNIGDT   81 (1005)
Q Consensus         2 ~~~~l~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~~~   81 (1005)
                      +.+.|+|+|++|++|+.++..|.+||||+|++++++++|+++++++||+|||+|.|.+.+..    ..|.|+|||++. .
T Consensus        11 ~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~----~~l~i~V~d~d~-~   85 (133)
T 2ep6_A           11 DVGILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFPIKDIH----DVLEVTVFDEDG-D   85 (133)
T ss_dssp             CSEEEEEEEEEEESCCCSSSSSCCCEEEEEEETTEEEECCCCSSCSSCCCCEEEEEEESCTT----CEEEEEEEEEET-T
T ss_pred             CceEEEEEEEeeECCCCCCCCCCcCeEEEEEECCEEEEeeeecCCCCCccccEEEEEecCCC----CEEEEEEEECCC-C
Confidence            45899999999999999999999999999999999999999999999999999999997543    589999999954 4


Q ss_pred             CCCcccEEEEEeCCcccCCCCceeeeEecccCCCcceeeeEEEEEEEEec
Q 045058           82 NSRSFLGKVCLTGNSFVPLSDSVVLHYPLEKRGIFSHVRGELGLKVYITD  131 (1005)
Q Consensus        82 ~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~~~  131 (1005)
                      ++|++||++.+++.++....   ..||+|..+......+|+|++++.+..
T Consensus        86 ~~~~~lG~~~i~l~~l~~~~---~~w~~L~~~~~~~~~~G~i~l~i~~~~  132 (133)
T 2ep6_A           86 KPPDFLGKVAIPLLSIRDGQ---PNCYVLKNKDLEQAFKGVIYLEMDLIY  132 (133)
T ss_dssp             EEEEECCBCEEEGGGCCSSC---CEECCCBCSCTTSCCSSEEEEEEEEEE
T ss_pred             CCCCeeEEEEEEHHHccCCC---ceEEEeecCCCCCccceEEEEEEEEEe
Confidence            57999999999999986543   369999987655578999999998864

>2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens}

Probab=99.80  E-value=3e-19  Score=172.18  Aligned_cols=119  Identities=24%  Similarity=0.323  Sum_probs=102.3

Q ss_pred             CcceEEEEEEEEecCCCCCCCCC-------CCCCCCcEEEEEECCEE-EEeeeccCCCCceeccEEEEEEeCCCceEEEE
Q 045058          593 PSIGILELGILNAVGLHPMKTRD-------GRGTSDTYCVAKYGHKW-VRTRTLVDNLSPKYNEQYTWEVFDPATVLTVG  664 (1005)
Q Consensus       593 ~~~g~l~v~i~~a~~L~~~~~~~-------~~~~~dpyv~~~~g~~~-~~T~~~~~t~nP~wne~f~~~v~~~~~~l~i~  664 (1005)
                      ...|.|+|+|++|+||+++|...       ..|.+||||++.+++.. .||+++++|+||+|||.|.|.+.+ ...|.|+
T Consensus        26 ~~~g~L~V~VieA~~L~~~D~~~~~~~f~~~~g~sDPYv~v~l~~~~~~kT~v~~ktlnP~WNE~F~f~v~~-~~~L~~~  104 (157)
T 2fk9_A           26 KFNGYLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSVDQVRVGQTSTKQKTNKPTYNEEFCANVTD-GGHLELA  104 (157)
T ss_dssp             CEEEEEEEEEEEEECCCCCHHHHHTTTSSSSCCCCCEEEEEEETTEEEEECCCCSSCSSCEEEEEEEEEEEE-ECEEEEE
T ss_pred             cCccEEEEEEEEEECCCCccccccccccccCCCCCCeEEEEEECCEeeEEeeecCCCCCCccCcEEEEEcCC-CCEEEEE
Confidence            45799999999999999875210       13679999999999876 699999999999999999999876 4589999


Q ss_pred             EEeCCCcCCCCCCCCCcccEEEEEEcccccCC----CEEeeeEeeeecCCCCCceeeEEEEEEEEe
Q 045058          665 VFDNSQLGEKSNGNKDLKIGKVRIRISTLETG----RIYTHSYPLLVLHPTGVKKMGELHLAIRFS  726 (1005)
Q Consensus       665 v~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~----~~~~~~~~L~~~~~~~~~~~G~i~l~~~~~  726 (1005)
                      |||+|.++      +|++||++.|+|.++..+    ...+.||+|.        ..|+|+|+++|+
T Consensus       105 V~D~d~~~------~dd~iG~~~i~l~~l~~~~~~~~~~~~W~~L~--------~~G~i~l~l~~~  156 (157)
T 2fk9_A          105 VFHETPLG------YDHFVANCTLQFQELLRTTGASDTFEGWVDLE--------PEGKVFVVITLT  156 (157)
T ss_dssp             EEECCSSS------SCEEEEEEEEEHHHHHHHHTTCSEEEEEEECB--------SSCEEEEEEEEC
T ss_pred             EEECCCCC------CCCEEEEEEEEHHHhhcccCCCCcccEEEECC--------CCcEEEEEEEEE
Confidence            99999876      899999999999998865    6789999995        149999999874

>3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} SCOP: b.7.1.0 PDB: 3kwt_A*

Probab=99.80  E-value=1.4e-18  Score=168.47  Aligned_cols=126  Identities=23%  Similarity=0.348  Sum_probs=105.1

Q ss_pred             ceEEEEEEEEecCCCCCCCCCCCCCCCcEEEEEECCEEEEeeeccCCCCceeccEEEEEEeCCCceEEEEEEeCCCcC--
Q 045058          595 IGILELGILNAVGLHPMKTRDGRGTSDTYCVAKYGHKWVRTRTLVDNLSPKYNEQYTWEVFDPATVLTVGVFDNSQLG--  672 (1005)
Q Consensus       595 ~g~l~v~i~~a~~L~~~~~~~~~~~~dpyv~~~~g~~~~~T~~~~~t~nP~wne~f~~~v~~~~~~l~i~v~d~~~~~--  672 (1005)
                      .|.|+|+|++|+||++++   ..|.+||||++.+++..++|+++++++||+|||.|.|.+..+...|.|+|||++...  
T Consensus        16 ~~~L~V~v~~a~~L~~~d---~~g~~dpyv~v~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~l~~~v~d~d~~~~~   92 (148)
T 3kwu_A           16 SAKISITVVCAQGLQAKD---KTGSSDPYVTVQVGKTKKRTKTIYGNLNPVWEENFHFECHNSSDRIKVRVLDEDDDIKS   92 (148)
T ss_dssp             CEEEEEEEEEEESCCCCS---TTSCCCEEEEEEETTEEEECCCCCSCSSCEEEEEEEEEECSTTCEEEEEEEECCCSHHH
T ss_pred             ccEEEEEEEeeeCCCCCC---CCCCcCeEEEEEECCEEEECCccCCCCCCCcccEEEEEecCCCCEEEEEEEECCCCccc
Confidence            599999999999999754   478899999999999999999999999999999999999988889999999998640  


Q ss_pred             ---CCCCCCCCcccEEEEEEcccccCCCEEeeeEeeeecCCCCCceeeEEEEEEEEe
Q 045058          673 ---EKSNGNKDLKIGKVRIRISTLETGRIYTHSYPLLVLHPTGVKKMGELHLAIRFS  726 (1005)
Q Consensus       673 ---~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~G~i~l~~~~~  726 (1005)
                         .....++|++||.+.|+|+++.  .....||+|......+ ...|+|+|+++|+
T Consensus        93 ~~~~~~~~~~~~~lG~~~i~l~~l~--~~~~~w~~L~~~~~~~-~~~G~i~l~l~~e  146 (148)
T 3kwu_A           93 RVKQRFKRESDDFLGQTIIEVRTLS--GEMDVWYNLDKRTDKS-AVSGAIRLHISVE  146 (148)
T ss_dssp             HHHTTTSSCSSEEEEEEEEEGGGCC--SEEEEEEECBCSSTTC-CCCCEEEEEEEEE
T ss_pred             cccccccCCCCccEEEEEEEHHHCc--CCCCEEEEcccCCCCC-CCceEEEEEEEEE
Confidence               0000137999999999999994  3458999998444333 3469999999985

>2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.79  E-value=1.4e-18  Score=166.95  Aligned_cols=124  Identities=20%  Similarity=0.315  Sum_probs=106.4

Q ss_pred             cceEEEEEEEEecCCCCCCCCCCCCCCCcEEEEEECCEEEEeeeccCCCCceeccEEEEEEeC----CCceEEEEEEeCC
Q 045058          594 SIGILELGILNAVGLHPMKTRDGRGTSDTYCVAKYGHKWVRTRTLVDNLSPKYNEQYTWEVFD----PATVLTVGVFDNS  669 (1005)
Q Consensus       594 ~~g~l~v~i~~a~~L~~~~~~~~~~~~dpyv~~~~g~~~~~T~~~~~t~nP~wne~f~~~v~~----~~~~l~i~v~d~~  669 (1005)
                      ..|.|+|+|++|+||+.++   . |.+||||+++++++.+||+++++++||+|||.|.|.+..    ....|.|+|||++
T Consensus         5 ~~g~L~v~v~~a~~L~~~~---~-g~~dpyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~~~l~i~V~d~d   80 (140)
T 2dmh_A            5 SSGMLRVIVESASNIPKTK---F-GKPDPIVSVIFKDEKKKTKKVDNELNPVWNEILEFDLRGIPLDFSSSLGIIVKDFE   80 (140)
T ss_dssp             BCCEEEEEEEEEESCCCCS---S-SCCCEEEEEECSSCEEECCCCCSCSSCEEEEEEEEECSSCCCCTTCEEEEEEEETT
T ss_pred             CCcEEEEEEEEeeCCCCCC---C-CCCCeEEEEEECCEeEEeeeecCCCCCccCcEEEEEecccccCCCCEEEEEEEECC
Confidence            4589999999999999754   4 889999999999999999999999999999999999975    3579999999999


Q ss_pred             CcCCCCCCCCCcccEEEEEEcccccCCCEEeeeEeeee-cCCCCCceeeEEEEEEEEee
Q 045058          670 QLGEKSNGNKDLKIGKVRIRISTLETGRIYTHSYPLLV-LHPTGVKKMGELHLAIRFSC  727 (1005)
Q Consensus       670 ~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~-~~~~~~~~~G~i~l~~~~~~  727 (1005)
                      .++      +|++||.+.|+|.++..+.....||++.. ....+....|+|+|+++|.+
T Consensus        81 ~~~------~~~~lG~~~i~l~~l~~~~~~~~w~~l~~l~~~~~~~~~G~l~l~~~~~p  133 (140)
T 2dmh_A           81 TIG------QNKLIGTATVALKDLTGDQSRSLPYKLISLLNEKGQDTGATIDLVIGYDP  133 (140)
T ss_dssp             CSS------SCCCCEEEEEEGGGTCSSSCEEEEEEEEEEECTTCCEEEEEEEEEEEECC
T ss_pred             CCC------CCceEEEEEEEHHHhccCCCceeEEeeeeccCCCCCCCCCEEEEEEEEEC
Confidence            876      78999999999999998887889998321 23334445699999999864

>3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A

Probab=99.79  E-value=9.7e-19  Score=170.73  Aligned_cols=124  Identities=23%  Similarity=0.322  Sum_probs=99.9

Q ss_pred             CcEEEEEEEEeecCCCCCCCCCCCcEEEEEECC------eEeeccccCCCCCCceeeEEEEEeccCccccceEEEEEEEe
Q 045058            3 NLKLGVQVVGAHNLLPKDGKGSSSAFVELYFDG------QRFRTTIKENDLNPVWNESFYFNISDASKLHYLTLEAYIYN   76 (1005)
Q Consensus         3 ~~~l~V~v~~a~~L~~~d~~g~~dpyv~v~~~~------~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d   76 (1005)
                      .+.|+|+|++|+||+.+|..|.+||||+|++.+      .+++|+++++++||+|||+|.|.+...+    ..|.|+|||
T Consensus        19 ~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~----~~l~~~V~d   94 (153)
T 3b7y_A           19 SRIVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNEEILFRVHPQQ----HRLLFEVFD   94 (153)
T ss_dssp             CEEEEEEEEEEESCC-------CCEEEEEEEEETTTEEEEEEECCCCSSCSSCCCCEEEEEEECTTT----CEEEEEEEE
T ss_pred             ccEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCCccceeeeCccccCCCCCCCCCEEEEEecCCC----CEEEEEEEE
Confidence            478999999999999999899999999999963      5789999999999999999999997543    589999999


Q ss_pred             CCCCCCCCcccEEEEEeCCcccCCCCc-----eeeeEecccCCCcceeeeEEEEEEEEec
Q 045058           77 NIGDTNSRSFLGKVCLTGNSFVPLSDS-----VVLHYPLEKRGIFSHVRGELGLKVYITD  131 (1005)
Q Consensus        77 ~~~~~~~d~~lG~~~i~l~~l~~~~~~-----~~~w~~L~~~~~~~~~~G~i~l~~~~~~  131 (1005)
                      ++. .++|++||++.|+|.++......     ...||+|.++...+..+|+|++++.|.+
T Consensus        95 ~d~-~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~G~i~l~l~~~P  153 (153)
T 3b7y_A           95 ENR-LTRDDFLGQVDVPLYPLPTENPRLERPYTFKDFVLHPRSHKSRVKGYLRLKMTYLP  153 (153)
T ss_dssp             CCS-SSCCEEEEEEEEECCSCCBCCTTSCCCCCCEEEECBCSSTTCCCCSEEEEEEEECC
T ss_pred             CCC-CcCCCeeEEEEEEHHHcccCCCcccccccccccccccccCCCCcceEEEEEEEEeC
Confidence            954 45899999999999998765542     2479999887655578899999998853

>2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens}

Probab=99.79  E-value=3.6e-19  Score=171.60  Aligned_cols=115  Identities=23%  Similarity=0.277  Sum_probs=97.9

Q ss_pred             CcEEEEEEEEeecCCCCCC----------CCCCCcEEEEEECCeE-eeccccCCCCCCceeeEEEEEeccCccccceEEE
Q 045058            3 NLKLGVQVVGAHNLLPKDG----------KGSSSAFVELYFDGQR-FRTTIKENDLNPVWNESFYFNISDASKLHYLTLE   71 (1005)
Q Consensus         3 ~~~l~V~v~~a~~L~~~d~----------~g~~dpyv~v~~~~~~-~~T~v~~~t~nP~Wne~f~f~v~~~~~~~~~~l~   71 (1005)
                      .+.|+|+|++|++|+++|.          .|.+||||+|++++++ .||+++++|+||+|||+|.|.+.+.     ..|.
T Consensus        28 ~g~L~V~VieA~~L~~~D~~~~~~~f~~~~g~sDPYv~v~l~~~~~~kT~v~~ktlnP~WNE~F~f~v~~~-----~~L~  102 (157)
T 2fk9_A           28 NGYLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSVDQVRVGQTSTKQKTNKPTYNEEFCANVTDG-----GHLE  102 (157)
T ss_dssp             EEEEEEEEEEEECCCCCHHHHHTTTSSSSCCCCCEEEEEEETTEEEEECCCCSSCSSCEEEEEEEEEEEEE-----CEEE
T ss_pred             ccEEEEEEEEEECCCCccccccccccccCCCCCCeEEEEEECCEeeEEeeecCCCCCCccCcEEEEEcCCC-----CEEE
Confidence            4789999999999999883          3679999999999875 7999999999999999999998642     4899


Q ss_pred             EEEEeCCCCCCCCcccEEEEEeCCcccCC---CCceeeeEecccCCCcceeeeEEEEEEEEe
Q 045058           72 AYIYNNIGDTNSRSFLGKVCLTGNSFVPL---SDSVVLHYPLEKRGIFSHVRGELGLKVYIT  130 (1005)
Q Consensus        72 v~V~d~~~~~~~d~~lG~~~i~l~~l~~~---~~~~~~w~~L~~~~~~~~~~G~i~l~~~~~  130 (1005)
                      |+|||++ ..++|++||++.|++.++...   +...+.||+|++       +|+|++++.+.
T Consensus       103 ~~V~D~d-~~~~dd~iG~~~i~l~~l~~~~~~~~~~~~W~~L~~-------~G~i~l~l~~~  156 (157)
T 2fk9_A          103 LAVFHET-PLGYDHFVANCTLQFQELLRTTGASDTFEGWVDLEP-------EGKVFVVITLT  156 (157)
T ss_dssp             EEEEECC-SSSSCEEEEEEEEEHHHHHHHHTTCSEEEEEEECBS-------SCEEEEEEEEC
T ss_pred             EEEEECC-CCCCCCEEEEEEEEHHHhhcccCCCCcccEEEECCC-------CcEEEEEEEEE
Confidence            9999985 456899999999999998653   345578999964       58999998764

>1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2

Probab=99.79  E-value=6.5e-19  Score=168.29  Aligned_cols=123  Identities=21%  Similarity=0.327  Sum_probs=108.0

Q ss_pred             CcceEEEEEEEEecCCCCCCCCCCCCCCCcEEEEEECCEEEEeeecc-CCCCceeccEEEEEEeCCCceEEEEEEeCCCc
Q 045058          593 PSIGILELGILNAVGLHPMKTRDGRGTSDTYCVAKYGHKWVRTRTLV-DNLSPKYNEQYTWEVFDPATVLTVGVFDNSQL  671 (1005)
Q Consensus       593 ~~~g~l~v~i~~a~~L~~~~~~~~~~~~dpyv~~~~g~~~~~T~~~~-~t~nP~wne~f~~~v~~~~~~l~i~v~d~~~~  671 (1005)
                      ...|.|+|+|++|+||++++   ..|.+||||++++++..+||++++ +++||+|||.|.|.+.+....|.|+|||++.+
T Consensus         7 ~~~~~L~v~v~~a~~L~~~d---~~g~~dpyv~v~~~~~~~kT~~~~~~~~nP~Wne~f~f~v~~~~~~l~~~V~d~~~~   83 (136)
T 1wfj_A            7 GPHGTLEVVLVSAKGLEDAD---FLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSEGTTELKAKIFDKDVG   83 (136)
T ss_dssp             CCEEEEEEEEEEEEECSSCC---SSCSSCCCEEEESSSCEEECCCCTTCCSSCEEEEEEEEEEESSCCEEEEEECCSSSC
T ss_pred             CCcEEEEEEEEeccCCCCcc---cCCCcCceEEEEECCccceeEeccCCCCCCccCcEEEEEECCCCCEEEEEEEECCCC
Confidence            45799999999999999754   468899999999999899999998 89999999999999998888999999999977


Q ss_pred             CCCCCCCCCcccEEEEEEcccc-cCCCEEeeeEeeeecCCCCCceeeEEEEEEEEeec
Q 045058          672 GEKSNGNKDLKIGKVRIRISTL-ETGRIYTHSYPLLVLHPTGVKKMGELHLAIRFSCT  728 (1005)
Q Consensus       672 ~~~~~~~~d~~lG~~~i~l~~l-~~~~~~~~~~~L~~~~~~~~~~~G~i~l~~~~~~~  728 (1005)
                      +      +|++||.+.|+|+++ ..+.....||+|.    .+.+..|+|+|+++|.+.
T Consensus        84 ~------~d~~lG~~~i~l~~l~~~~~~~~~w~~L~----~~~~~~G~i~l~l~~~p~  131 (136)
T 1wfj_A           84 T------EDDAVGEATIPLEPVFVEGSIPPTAYNVV----KDEEYKGEIWVALSFKPS  131 (136)
T ss_dssp             T------TTCCSEEEEEESHHHHHHSEEEEEEEEEE----ETTEEEEEEEEEEEEEEC
T ss_pred             C------CCceEEEEEEEHHHhccCCCCCcEEEEee----cCCccCEEEEEEEEEEeC
Confidence            6      899999999999999 5566668899997    123456999999999754

>1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2

Probab=99.79  E-value=5.5e-19  Score=168.79  Aligned_cols=122  Identities=20%  Similarity=0.283  Sum_probs=106.5

Q ss_pred             CCcEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEeeccccC-CCCCCceeeEEEEEeccCccccceEEEEEEEeCCCC
Q 045058            2 RNLKLGVQVVGAHNLLPKDGKGSSSAFVELYFDGQRFRTTIKE-NDLNPVWNESFYFNISDASKLHYLTLEAYIYNNIGD   80 (1005)
Q Consensus         2 ~~~~l~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~T~v~~-~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~~   80 (1005)
                      +.+.|+|+|++|++|+.++..|.+||||+|++++++++|++++ +++||+|||+|.|.+.+.    ...|.|+|||++ .
T Consensus         8 ~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~~~~~~~~nP~Wne~f~f~v~~~----~~~l~~~V~d~~-~   82 (136)
T 1wfj_A            8 PHGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSEG----TTELKAKIFDKD-V   82 (136)
T ss_dssp             CEEEEEEEEEEEEECSSCCSSCSSCCCEEEESSSCEEECCCCTTCCSSCEEEEEEEEEEESS----CCEEEEEECCSS-S
T ss_pred             CcEEEEEEEEeccCCCCcccCCCcCceEEEEECCccceeEeccCCCCCCccCcEEEEEECCC----CCEEEEEEEECC-C
Confidence            4589999999999999999999999999999999999999998 899999999999999753    358999999995 4


Q ss_pred             CCCCcccEEEEEeCCcccCCCCceeeeEecccCCCcceeeeEEEEEEEEec
Q 045058           81 TNSRSFLGKVCLTGNSFVPLSDSVVLHYPLEKRGIFSHVRGELGLKVYITD  131 (1005)
Q Consensus        81 ~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~~~  131 (1005)
                      .++|++||++.|+|.++...+.....||+|.+.   ...+|+|++++.|.+
T Consensus        83 ~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~---~~~~G~i~l~l~~~p  130 (136)
T 1wfj_A           83 GTEDDAVGEATIPLEPVFVEGSIPPTAYNVVKD---EEYKGEIWVALSFKP  130 (136)
T ss_dssp             CTTTCCSEEEEEESHHHHHHSEEEEEEEEEEET---TEEEEEEEEEEEEEE
T ss_pred             CCCCceEEEEEEEHHHhccCCCCCcEEEEeecC---CccCEEEEEEEEEEe
Confidence            568999999999999985545445689999832   368999999999987

>3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus}

Probab=99.78  E-value=1.4e-18  Score=173.64  Aligned_cols=124  Identities=23%  Similarity=0.312  Sum_probs=101.1

Q ss_pred             CcEEEEEEEEeecCCCCCCCCCCCcEEEEEECC------eEeeccccCCCCCCceeeEEEEEeccCccccceEEEEEEEe
Q 045058            3 NLKLGVQVVGAHNLLPKDGKGSSSAFVELYFDG------QRFRTTIKENDLNPVWNESFYFNISDASKLHYLTLEAYIYN   76 (1005)
Q Consensus         3 ~~~l~V~v~~a~~L~~~d~~g~~dpyv~v~~~~------~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d   76 (1005)
                      .+.|+|+|++|++|+.++..|.+||||+|++.+      .+++|+++++++||+|||+|.|.+....    ..|.|+|||
T Consensus         7 ~g~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~----~~L~~~V~d   82 (176)
T 3m7f_B            7 TRVVRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEEILFRVLPQR----HRILFEVFD   82 (176)
T ss_dssp             CEEEEEEEEEEESCC---CCCCCCEEEEEEEEETTTEEEEEEECCCCSSCSSCEEEEEEEEEECTTT----CEEEEEEEE
T ss_pred             cEEEEEEEEEeeCCCCcCCCCCcCcEEEEEEECCCCCcccceeCceECCCCCCcccceEEEEEcCCC----CEEEEEEEE
Confidence            489999999999999999999999999999975      5789999999999999999999997543    589999999


Q ss_pred             CCCCCCCCcccEEEEEeCCcccCCCCcee-----eeEecccCCCcceeeeEEEEEEEEec
Q 045058           77 NIGDTNSRSFLGKVCLTGNSFVPLSDSVV-----LHYPLEKRGIFSHVRGELGLKVYITD  131 (1005)
Q Consensus        77 ~~~~~~~d~~lG~~~i~l~~l~~~~~~~~-----~w~~L~~~~~~~~~~G~i~l~~~~~~  131 (1005)
                      ++. .++|+|||++.|+|.++.......+     .||+|.++...++.+|+|+|++.|.+
T Consensus        83 ~d~-~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~l~~~p  141 (176)
T 3m7f_B           83 ENR-LTRDDFLGQVDVPLYPLPTENPRMERPYTFKDFVLHPRSHKSRVKGYLRLKMTYLP  141 (176)
T ss_dssp             CC-----CEEEEEEEEESCSCCBC------CCCCEEEECBCSSTTCCCCSEEEEEEEECC
T ss_pred             CCC-CCCCcEEEEEEEEHHHccccCCcccccccccEEEccccCCCCccCEEEEEEEEEEe
Confidence            954 4589999999999999977654322     69999988666678999999999987

>3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A

Probab=99.77  E-value=2.3e-18  Score=168.05  Aligned_cols=124  Identities=24%  Similarity=0.358  Sum_probs=101.0

Q ss_pred             CcceEEEEEEEEecCCCCCCCCCCCCCCCcEEEEEECC------EEEEeeeccCCCCceeccEEEEEEeCCCceEEEEEE
Q 045058          593 PSIGILELGILNAVGLHPMKTRDGRGTSDTYCVAKYGH------KWVRTRTLVDNLSPKYNEQYTWEVFDPATVLTVGVF  666 (1005)
Q Consensus       593 ~~~g~l~v~i~~a~~L~~~~~~~~~~~~dpyv~~~~g~------~~~~T~~~~~t~nP~wne~f~~~v~~~~~~l~i~v~  666 (1005)
                      +..|.|+|+|++|+||++++   ..|.+||||++.+++      ..+||+++++++||+|||.|.|.+......|.|+||
T Consensus        17 ~~~~~L~V~v~~a~~L~~~d---~~g~~dpyv~v~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~l~~~V~   93 (153)
T 3b7y_A           17 ENSRIVRVRVIAGIGLAKKD---ILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNEEILFRVHPQQHRLLFEVF   93 (153)
T ss_dssp             TTCEEEEEEEEEEESCC----------CCEEEEEEEEETTTEEEEEEECCCCSSCSSCCCCEEEEEEECTTTCEEEEEEE
T ss_pred             CCccEEEEEEEEeeCCCCCC---CCCCCCcEEEEEEECCCCccceeeeCccccCCCCCCCCCEEEEEecCCCCEEEEEEE
Confidence            56799999999999999754   468899999999963      578999999999999999999999887889999999


Q ss_pred             eCCCcCCCCCCCCCcccEEEEEEcccccCCCE------EeeeEeeeecCCCCCceeeEEEEEEEEe
Q 045058          667 DNSQLGEKSNGNKDLKIGKVRIRISTLETGRI------YTHSYPLLVLHPTGVKKMGELHLAIRFS  726 (1005)
Q Consensus       667 d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~------~~~~~~L~~~~~~~~~~~G~i~l~~~~~  726 (1005)
                      |++.++      +|++||.+.|+|.++..+..      ...||+|......+ +..|+|+|+++|.
T Consensus        94 d~d~~~------~d~~iG~~~i~l~~l~~~~~~~~~~~~~~w~~L~~~~~~~-~~~G~i~l~l~~~  152 (153)
T 3b7y_A           94 DENRLT------RDDFLGQVDVPLYPLPTENPRLERPYTFKDFVLHPRSHKS-RVKGYLRLKMTYL  152 (153)
T ss_dssp             ECCSSS------CCEEEEEEEEECCSCCBCCTTSCCCCCCEEEECBCSSTTC-CCCSEEEEEEEEC
T ss_pred             ECCCCc------CCCeeEEEEEEHHHcccCCCcccccccccccccccccCCC-CcceEEEEEEEEe
Confidence            999876      89999999999999877652      24899997554333 3469999999984

>3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A

Probab=99.77  E-value=2.5e-18  Score=163.12  Aligned_cols=122  Identities=25%  Similarity=0.358  Sum_probs=101.0

Q ss_pred             CcEEEEEEEEeecCCCCCCCCCCCcEEEEEECC--eEeeccccCCCCCCceeeEEEEEeccCccccceEEEEEEEeCCCC
Q 045058            3 NLKLGVQVVGAHNLLPKDGKGSSSAFVELYFDG--QRFRTTIKENDLNPVWNESFYFNISDASKLHYLTLEAYIYNNIGD   80 (1005)
Q Consensus         3 ~~~l~V~v~~a~~L~~~d~~g~~dpyv~v~~~~--~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~~   80 (1005)
                      ...|+|+|++|++|..+|..|.+||||+|++++  ++++|+++++|+||+|||+|.|.+...+     .|.|+|||++..
T Consensus         4 ~~~L~V~v~~a~~L~~~d~~g~sDpyv~v~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~-----~l~~~v~d~d~~   78 (132)
T 3pyc_A            4 FIKIRLTVLCAKNLAKKDFFRLPDPFAKIVVDGSGQCHSTDTVKNTLDPKWNQHYDLYVGKTD-----SITISVWNHKKI   78 (132)
T ss_dssp             EEEEEEEEEEEESCCCCSTTCCCCEEEEEEETTTCCEEECCCCSSCSSCEEEEEEEEEEETTC-----CEEEEEEEGGGT
T ss_pred             eEEEEEEEEEeECCCCCCCCCCcCeEEEEEECCCCceEECCccCCCCCCCccCEEEEEeCCCC-----EEEEEEEECCCC
Confidence            368999999999999999999999999999975  7899999999999999999999996643     499999999654


Q ss_pred             CC--CCcccEEEEEeCCcccCCCCceeeeEecccC--CCcceeeeEEEEEEEE
Q 045058           81 TN--SRSFLGKVCLTGNSFVPLSDSVVLHYPLEKR--GIFSHVRGELGLKVYI  129 (1005)
Q Consensus        81 ~~--~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~--~~~~~~~G~i~l~~~~  129 (1005)
                      ..  .|+|||++.|++.++.........|++|.+.  ......+|+|++++..
T Consensus        79 ~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~L~~~~~~~~~~~~G~i~v~l~~  131 (132)
T 3pyc_A           79 HKKQGAGFLGCVRLLSNAISRLKDTGYQRLDLCKLNPSDTDAVRGQIVVSLQT  131 (132)
T ss_dssp             TSSTTTTEEEEEEECHHHHHHHTTSCCEEEECBCSSTTCCCCCCSEEEEEEEE
T ss_pred             CCCCCCCceEEEEEeHHHhhcccccCcEEEeeeecCCCCCCceeEEEEEEEEc
Confidence            31  2899999999998884443333478999876  3334578999999864

>1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1

Probab=99.76  E-value=2.5e-18  Score=163.94  Aligned_cols=116  Identities=16%  Similarity=0.275  Sum_probs=98.8

Q ss_pred             CcEEEEEEEEeecCCCCCCCCC-----------CCcEEEEEECCeE-eeccccCCCCCCceeeEEEEEeccCccccceEE
Q 045058            3 NLKLGVQVVGAHNLLPKDGKGS-----------SSAFVELYFDGQR-FRTTIKENDLNPVWNESFYFNISDASKLHYLTL   70 (1005)
Q Consensus         3 ~~~l~V~v~~a~~L~~~d~~g~-----------~dpyv~v~~~~~~-~~T~v~~~t~nP~Wne~f~f~v~~~~~~~~~~l   70 (1005)
                      .+.|+|+|++|+||+++|..|.           +||||+|++++.+ .+|+++++|+||+|||+|.|.+.+.     ..|
T Consensus         5 ~g~L~v~v~~a~~L~~~d~~~~~~~g~~~~~~~~DPyv~v~l~~~~~~~T~~~~~t~nP~WnE~f~f~v~~~-----~~L   79 (136)
T 1gmi_A            5 NGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAWHDEFVTDVCNG-----RKI   79 (136)
T ss_dssp             EEEEEEEEEEEESCCCCHHHHCC-CCSSCCCCCCCEEEEEEETTEEEEECCCCSSCSSCEEEEEEEEEEEEE-----CEE
T ss_pred             ceEEEEEEEeCcCCCCcccccccccccccCCcCcCcEEEEEECCeEeeeeeEECCCcCCccCCEEEEEecCC-----CEE
Confidence            4899999999999998875443           9999999998875 7999999999999999999998653     489


Q ss_pred             EEEEEeCCCCCCCCcccEEEEEeCCcccCCC-CceeeeEecccCCCcceeeeEEEEEEEEec
Q 045058           71 EAYIYNNIGDTNSRSFLGKVCLTGNSFVPLS-DSVVLHYPLEKRGIFSHVRGELGLKVYITD  131 (1005)
Q Consensus        71 ~v~V~d~~~~~~~d~~lG~~~i~l~~l~~~~-~~~~~w~~L~~~~~~~~~~G~i~l~~~~~~  131 (1005)
                      .|+|||++. .++|++||++.|++.++...+ ...+.|++|++       +|+|++++.+..
T Consensus        80 ~~~V~d~d~-~~~dd~iG~~~i~l~~l~~~~~~~~~~w~~L~~-------~G~i~l~l~~~~  133 (136)
T 1gmi_A           80 ELAVFHDAP-IGYDDFVANCTIQFEELLQNGSRHFEDWIDLEP-------EGKVYVIIDLSG  133 (136)
T ss_dssp             EEEEEECCS-SSSCEEEEEEEEEHHHHTSTTCSEEEEEEECBS-------SCEEEEEEEEEE
T ss_pred             EEEEEeCCC-CCCCCEEEEEEEEHHHhcccCCCCccEEEEcCC-------CeEEEEEEEEEe
Confidence            999999954 558999999999999987754 33468999964       589999998865

>1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1

Probab=99.76  E-value=5.2e-18  Score=161.73  Aligned_cols=118  Identities=21%  Similarity=0.283  Sum_probs=100.1

Q ss_pred             ceEEEEEEEEecCCCCCCCCC--------CCCCCCcEEEEEECCEE-EEeeeccCCCCceeccEEEEEEeCCCceEEEEE
Q 045058          595 IGILELGILNAVGLHPMKTRD--------GRGTSDTYCVAKYGHKW-VRTRTLVDNLSPKYNEQYTWEVFDPATVLTVGV  665 (1005)
Q Consensus       595 ~g~l~v~i~~a~~L~~~~~~~--------~~~~~dpyv~~~~g~~~-~~T~~~~~t~nP~wne~f~~~v~~~~~~l~i~v  665 (1005)
                      .|.|+|+|++|+||+++|...        ..+.+||||++.+++.. .+|+++.+|+||+|||.|.|.+.+. ..|.|+|
T Consensus         5 ~g~L~v~v~~a~~L~~~d~~~~~~~g~~~~~~~~DPyv~v~l~~~~~~~T~~~~~t~nP~WnE~f~f~v~~~-~~L~~~V   83 (136)
T 1gmi_A            5 NGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAWHDEFVTDVCNG-RKIELAV   83 (136)
T ss_dssp             EEEEEEEEEEEESCCCCHHHHCC-CCSSCCCCCCCEEEEEEETTEEEEECCCCSSCSSCEEEEEEEEEEEEE-CEEEEEE
T ss_pred             ceEEEEEEEeCcCCCCcccccccccccccCCcCcCcEEEEEECCeEeeeeeEECCCcCCccCCEEEEEecCC-CEEEEEE
Confidence            599999999999999765210        01348999999998875 5999999999999999999999876 8999999


Q ss_pred             EeCCCcCCCCCCCCCcccEEEEEEcccccCC--CEEeeeEeeeecCCCCCceeeEEEEEEEEee
Q 045058          666 FDNSQLGEKSNGNKDLKIGKVRIRISTLETG--RIYTHSYPLLVLHPTGVKKMGELHLAIRFSC  727 (1005)
Q Consensus       666 ~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~--~~~~~~~~L~~~~~~~~~~~G~i~l~~~~~~  727 (1005)
                      ||+|.++      +|++||.+.|+|+++..+  ...+.|++|.        ..|+|+|+++|..
T Consensus        84 ~d~d~~~------~dd~iG~~~i~l~~l~~~~~~~~~~w~~L~--------~~G~i~l~l~~~~  133 (136)
T 1gmi_A           84 FHDAPIG------YDDFVANCTIQFEELLQNGSRHFEDWIDLE--------PEGKVYVIIDLSG  133 (136)
T ss_dssp             EECCSSS------SCEEEEEEEEEHHHHTSTTCSEEEEEEECB--------SSCEEEEEEEEEE
T ss_pred             EeCCCCC------CCCEEEEEEEEHHHhcccCCCCccEEEEcC--------CCeEEEEEEEEEe
Confidence            9999876      899999999999998874  3568899985        2499999999865

>3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus}

Probab=99.75  E-value=7.7e-18  Score=168.27  Aligned_cols=125  Identities=22%  Similarity=0.341  Sum_probs=100.5

Q ss_pred             CcceEEEEEEEEecCCCCCCCCCCCCCCCcEEEEEECC------EEEEeeeccCCCCceeccEEEEEEeCCCceEEEEEE
Q 045058          593 PSIGILELGILNAVGLHPMKTRDGRGTSDTYCVAKYGH------KWVRTRTLVDNLSPKYNEQYTWEVFDPATVLTVGVF  666 (1005)
Q Consensus       593 ~~~g~l~v~i~~a~~L~~~~~~~~~~~~dpyv~~~~g~------~~~~T~~~~~t~nP~wne~f~~~v~~~~~~l~i~v~  666 (1005)
                      ...|.|+|+|++|+||++++   ..|.+||||++.+++      ..++|+++++++||+|||.|.|.+......|.|+||
T Consensus         5 ~~~g~L~V~v~~a~~L~~~d---~~g~~DPyv~v~l~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~L~~~V~   81 (176)
T 3m7f_B            5 DDTRVVRVKVIAGIGLAKKD---ILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEEILFRVLPQRHRILFEVF   81 (176)
T ss_dssp             TTCEEEEEEEEEEESCC------CCCCCCEEEEEEEEETTTEEEEEEECCCCSSCSSCEEEEEEEEEECTTTCEEEEEEE
T ss_pred             CCcEEEEEEEEEeeCCCCcC---CCCCcCcEEEEEEECCCCCcccceeCceECCCCCCcccceEEEEEcCCCCEEEEEEE
Confidence            45699999999999999754   478899999999965      678999999999999999999999977789999999


Q ss_pred             eCCCcCCCCCCCCCcccEEEEEEcccccCCCEE-e-----eeEeeeecCCCCCceeeEEEEEEEEee
Q 045058          667 DNSQLGEKSNGNKDLKIGKVRIRISTLETGRIY-T-----HSYPLLVLHPTGVKKMGELHLAIRFSC  727 (1005)
Q Consensus       667 d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~-~-----~~~~L~~~~~~~~~~~G~i~l~~~~~~  727 (1005)
                      |++.++      +|++||.+.|+|.++..+... .     .||+|.....++. ..|+|+|+++|.+
T Consensus        82 d~d~~~------~d~~lG~~~i~l~~l~~~~~~~~~~~~~~w~~L~~~~~~~~-~~G~l~l~l~~~p  141 (176)
T 3m7f_B           82 DENRLT------RDDFLGQVDVPLYPLPTENPRMERPYTFKDFVLHPRSHKSR-VKGYLRLKMTYLP  141 (176)
T ss_dssp             ECC----------CEEEEEEEEESCSCCBC------CCCCEEEECBCSSTTCC-CCSEEEEEEEECC
T ss_pred             ECCCCC------CCcEEEEEEEEHHHccccCCcccccccccEEEccccCCCCc-cCEEEEEEEEEEe
Confidence            999876      899999999999999876532 2     7999985544433 4599999999854

>1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1

Probab=99.75  E-value=4e-18  Score=160.41  Aligned_cols=117  Identities=17%  Similarity=0.244  Sum_probs=99.3

Q ss_pred             ceEEEEEEEEecCCCCCCCCCCCCCCCcEEEEEECC---EEEEeeeccCCCCceeccEEEEEEeC-CCceEEEEEEeCCC
Q 045058          595 IGILELGILNAVGLHPMKTRDGRGTSDTYCVAKYGH---KWVRTRTLVDNLSPKYNEQYTWEVFD-PATVLTVGVFDNSQ  670 (1005)
Q Consensus       595 ~g~l~v~i~~a~~L~~~~~~~~~~~~dpyv~~~~g~---~~~~T~~~~~t~nP~wne~f~~~v~~-~~~~l~i~v~d~~~  670 (1005)
                      .|.|+|+|++|+||++++..+..|.+||||++++++   ..+||+++++++||+|||.|.|.+.. ....|.|+|||++.
T Consensus         2 ~~~L~v~v~~a~~L~~~~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~l~i~V~d~d~   81 (126)
T 1rlw_A            2 SHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDANY   81 (126)
T ss_dssp             CEEEEEEEEEEESCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECTTSCCEEEEEEEECCS
T ss_pred             CcEEEEEEEeeeCCCCCCccccCCCCCCEEEEEEccCCCceEEccccCCCCCCcccceEEEEecCCCCCEEEEEEEECCC
Confidence            489999999999999753334568899999999975   67999999999999999999999965 46799999999985


Q ss_pred             cCCCCCCCCCcccEEEEEEcccccCCCEEeeeEeeeecCCCCCceeeEEEEEEE
Q 045058          671 LGEKSNGNKDLKIGKVRIRISTLETGRIYTHSYPLLVLHPTGVKKMGELHLAIR  724 (1005)
Q Consensus       671 ~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~G~i~l~~~  724 (1005)
                      +       +|++||.+.|+|+++..+.....||+|..      ...|.|+++++
T Consensus        82 ~-------~~~~iG~~~i~l~~l~~~~~~~~~~~L~~------~~~g~i~~~le  122 (126)
T 1rlw_A           82 V-------MDETLGTATFTVSSMKVGEKKEVPFIFNQ------VTEMVLEMSLE  122 (126)
T ss_dssp             S-------CCEEEEEEEEEGGGSCTTCEEEEEEEETT------TEEEEEEEEEE
T ss_pred             C-------CCceeEEEEEEHHHccCCCcEEEEEEcCC------CceEEEEEEEE
Confidence            3       48899999999999999998899999951      23467766665

>1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1

Probab=99.74  E-value=1e-17  Score=157.58  Aligned_cols=117  Identities=24%  Similarity=0.302  Sum_probs=97.4

Q ss_pred             CCcEEEEEEEEeecCCCC---CCCCCCCcEEEEEECC---eEeeccccCCCCCCceeeEEEEEeccCccccceEEEEEEE
Q 045058            2 RNLKLGVQVVGAHNLLPK---DGKGSSSAFVELYFDG---QRFRTTIKENDLNPVWNESFYFNISDASKLHYLTLEAYIY   75 (1005)
Q Consensus         2 ~~~~l~V~v~~a~~L~~~---d~~g~~dpyv~v~~~~---~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~   75 (1005)
                      +.+.|.|+|++|+||+.+   +..|.+||||+|++++   .+++|+++++++||+|||+|.|.+...+   ...|.|+||
T Consensus         1 S~~~L~v~v~~a~~L~~~~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~---~~~l~i~V~   77 (126)
T 1rlw_A            1 SSHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQ---ENVLEITLM   77 (126)
T ss_dssp             CCEEEEEEEEEEESCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECTTS---CCEEEEEEE
T ss_pred             CCcEEEEEEEeeeCCCCCCccccCCCCCCEEEEEEccCCCceEEccccCCCCCCcccceEEEEecCCC---CCEEEEEEE
Confidence            357899999999999984   6678999999999985   6899999999999999999999995433   368999999


Q ss_pred             eCCCCCCCCcccEEEEEeCCcccCCCCceeeeEecccCCCcceeeeEEEEEEEE
Q 045058           76 NNIGDTNSRSFLGKVCLTGNSFVPLSDSVVLHYPLEKRGIFSHVRGELGLKVYI  129 (1005)
Q Consensus        76 d~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~  129 (1005)
                      |++. . +|++||++.++|.++..+. ....|++|.+.     ..|+|++++..
T Consensus        78 d~d~-~-~~~~iG~~~i~l~~l~~~~-~~~~~~~L~~~-----~~g~i~~~le~  123 (126)
T 1rlw_A           78 DANY-V-MDETLGTATFTVSSMKVGE-KKEVPFIFNQV-----TEMVLEMSLEV  123 (126)
T ss_dssp             ECCS-S-CCEEEEEEEEEGGGSCTTC-EEEEEEEETTT-----EEEEEEEEEEC
T ss_pred             ECCC-C-CCceeEEEEEEHHHccCCC-cEEEEEEcCCC-----ceEEEEEEEEe
Confidence            9964 3 5899999999999987544 44689999863     35777777743

>2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1

Probab=99.74  E-value=1.4e-17  Score=164.75  Aligned_cols=123  Identities=20%  Similarity=0.223  Sum_probs=101.6

Q ss_pred             CcEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEeeccccCCCCCCceeeEEEEEeccCccccceEEEEEEEeCCCCCC
Q 045058            3 NLKLGVQVVGAHNLLPKDGKGSSSAFVELYFDGQRFRTTIKENDLNPVWNESFYFNISDASKLHYLTLEAYIYNNIGDTN   82 (1005)
Q Consensus         3 ~~~l~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~~~~   82 (1005)
                      .+.|+|+|++|++|..++..+.+||||+|+++++++||+++++|+||+|||+|.|.+..     ...|.|+|||++. .+
T Consensus        35 ~~~L~V~V~~A~~L~~~~~~~~sDPYv~v~~~~~~~kT~v~~~tlnP~Wne~f~f~v~~-----~~~L~~~V~D~d~-~~  108 (173)
T 2nq3_A           35 KSQLQITVISAKLKENKKNWFGPSPYVEVTVDGQSKKTEKCNNTNSPKWKQPLTVIVTP-----VSKLHFRVWSHQT-LK  108 (173)
T ss_dssp             CEEEEEEEEEEEECCCC--CCCCCEEEEEEETTEEEECCCCSSCSSCEEEEEEEEEECT-----TCEEEEEEEECCS-SS
T ss_pred             ceEEEEEEEEeECCCCcccCCCCCeEEEEEECCEEeEccccCCCCCCeECCEEEEEeCC-----CCEEEEEEEECCC-CC
Confidence            46899999999999954444559999999999999999999999999999999999843     3589999999964 45


Q ss_pred             CCcccEEEEEeCCcccCCC----CceeeeEecccCCCcceeeeEEEEEEEEec
Q 045058           83 SRSFLGKVCLTGNSFVPLS----DSVVLHYPLEKRGIFSHVRGELGLKVYITD  131 (1005)
Q Consensus        83 ~d~~lG~~~i~l~~l~~~~----~~~~~w~~L~~~~~~~~~~G~i~l~~~~~~  131 (1005)
                      +|++||++.++|.++....    .....|++|.+.......+|+|.+++.+..
T Consensus       109 ~dd~lG~~~i~l~~l~~~~~~~~~~~~~~~~L~~~~~~~~~~G~L~v~l~~l~  161 (173)
T 2nq3_A          109 SDVLLGTAALDIYETLKSNNMKLEEVVVTLQLGGDKEPTETIGDLSICLDGLQ  161 (173)
T ss_dssp             CCEEEEEEEEEHHHHHHHTTTEESSEEEEEEEEESSCTTSEEEEEEEEEESEE
T ss_pred             CCceEEEEEEEHHHhcccCCCCcceeEEEEECccCCCCCcccEEEEEEEeeee
Confidence            8999999999999986432    122569999887544568999999998776

>2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens}

Probab=99.72  E-value=1.1e-17  Score=162.29  Aligned_cols=107  Identities=18%  Similarity=0.188  Sum_probs=92.5

Q ss_pred             CcEEEEEEEEeecCCCCCCCCCCCcEEEEEECC---e---EeeccccCCCCCCceeeEEEEEeccCccccceEEEEEEEe
Q 045058            3 NLKLGVQVVGAHNLLPKDGKGSSSAFVELYFDG---Q---RFRTTIKENDLNPVWNESFYFNISDASKLHYLTLEAYIYN   76 (1005)
Q Consensus         3 ~~~l~V~v~~a~~L~~~d~~g~~dpyv~v~~~~---~---~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d   76 (1005)
                      .+.|+|+|++|+||+++|..|.+||||++++..   .   ++||+++++|+||+|||+|.|.+...+ +....|.|+|||
T Consensus        42 ~~~L~V~Vi~a~~L~~~d~~g~sDPyVkv~l~~~~~~~~~~~kT~v~~~tlnP~wnE~F~f~v~~~~-l~~~~L~~~V~d  120 (155)
T 2z0u_A           42 NKQFAILIIQLSNLSALLQQQDQKVNIRVAVLPCSESTTCLFRTRPLDASDTLVFNEVFWVSMSYPA-LHQKTLRVDVCT  120 (155)
T ss_dssp             TTEEEEEEEEEECGGGTCCSCCSEEEEEEEEESCSCHHHHEEECCCEECCSSEEEEEEEEEECCHHH-HHHCEEEEEEEE
T ss_pred             CCEEEEEEEEccCcCCcccCCCCCEEEEEEEecCCCCCccceeCCcCCCCCCCccccEEEEEcCHHH-hCcCEEEEEEEE
Confidence            478999999999999999999999999999954   2   799999999999999999999986432 345689999999


Q ss_pred             CCCCCCCCcccEEEEEeCCcccCCCCceeeeEecc
Q 045058           77 NIGDTNSRSFLGKVCLTGNSFVPLSDSVVLHYPLE  111 (1005)
Q Consensus        77 ~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~  111 (1005)
                      ++. .+++++||++.|+|.++...+.....||+|.
T Consensus       121 ~d~-~~~~d~iG~~~i~l~~l~~~~~~~~~W~~L~  154 (155)
T 2z0u_A          121 TDR-SHLEECLGGAQISLAEVCRSGERSTRWYNLL  154 (155)
T ss_dssp             ECT-TSCEEEEEEEEEECTTSCTTCCCEEEEEEEB
T ss_pred             CCC-CCCCcEEEEEEEEHHHccCCCCccccceEcc
Confidence            965 4689999999999999975555567899986

>3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A

Probab=99.72  E-value=4.3e-17  Score=154.58  Aligned_cols=124  Identities=18%  Similarity=0.220  Sum_probs=99.1

Q ss_pred             ceEEEEEEEEecCCCCCCCCCCCCCCCcEEEEEECC--EEEEeeeccCCCCceeccEEEEEEeCCCceEEEEEEeCCCcC
Q 045058          595 IGILELGILNAVGLHPMKTRDGRGTSDTYCVAKYGH--KWVRTRTLVDNLSPKYNEQYTWEVFDPATVLTVGVFDNSQLG  672 (1005)
Q Consensus       595 ~g~l~v~i~~a~~L~~~~~~~~~~~~dpyv~~~~g~--~~~~T~~~~~t~nP~wne~f~~~v~~~~~~l~i~v~d~~~~~  672 (1005)
                      ...|+|+|++|++|+++|   ..|.+||||++.+++  +.++|+++++|+||+|||.|.|.+.++. .|.|+|||++.++
T Consensus         4 ~~~L~V~v~~a~~L~~~d---~~g~sDpyv~v~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~-~l~~~v~d~d~~~   79 (132)
T 3pyc_A            4 FIKIRLTVLCAKNLAKKD---FFRLPDPFAKIVVDGSGQCHSTDTVKNTLDPKWNQHYDLYVGKTD-SITISVWNHKKIH   79 (132)
T ss_dssp             EEEEEEEEEEEESCCCCS---TTCCCCEEEEEEETTTCCEEECCCCSSCSSCEEEEEEEEEEETTC-CEEEEEEEGGGTT
T ss_pred             eEEEEEEEEEeECCCCCC---CCCCcCeEEEEEECCCCceEECCccCCCCCCCccCEEEEEeCCCC-EEEEEEEECCCCC
Confidence            468999999999999754   578899999999964  7889999999999999999999998764 4999999999775


Q ss_pred             CCCCCCCCcccEEEEEEccccc-CCCEEeeeEeeeecCCCC-CceeeEEEEEEEE
Q 045058          673 EKSNGNKDLKIGKVRIRISTLE-TGRIYTHSYPLLVLHPTG-VKKMGELHLAIRF  725 (1005)
Q Consensus       673 ~~~~~~~d~~lG~~~i~l~~l~-~~~~~~~~~~L~~~~~~~-~~~~G~i~l~~~~  725 (1005)
                         ....|++||.+.|+++++. .......|++|....+.+ ....|+|+++++.
T Consensus        80 ---~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~L~~~~~~~~~~~~G~i~v~l~~  131 (132)
T 3pyc_A           80 ---KKQGAGFLGCVRLLSNAISRLKDTGYQRLDLCKLNPSDTDAVRGQIVVSLQT  131 (132)
T ss_dssp             ---SSTTTTEEEEEEECHHHHHHHTTSCCEEEECBCSSTTCCCCCCSEEEEEEEE
T ss_pred             ---CCCCCCceEEEEEeHHHhhcccccCcEEEeeeecCCCCCCceeEEEEEEEEc
Confidence               1123899999999999882 222224789997653322 2347999998864

>2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.71  E-value=3.5e-17  Score=154.62  Aligned_cols=106  Identities=22%  Similarity=0.426  Sum_probs=88.6

Q ss_pred             CcEEEEEEEEeecCCCCCCCCCCCcEEEEEE-----CCeEeeccccCCCCCCceeeEEEEEeccCccccceEEEEEEEeC
Q 045058            3 NLKLGVQVVGAHNLLPKDGKGSSSAFVELYF-----DGQRFRTTIKENDLNPVWNESFYFNISDASKLHYLTLEAYIYNN   77 (1005)
Q Consensus         3 ~~~l~V~v~~a~~L~~~d~~g~~dpyv~v~~-----~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~   77 (1005)
                      .+.|.|+|++|+||+.++..|.+||||+|++     +..+++|+++++++||+|||+|.|.+...+.+....|.|+|||+
T Consensus        17 ~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~l~~~V~d~   96 (129)
T 2bwq_A           17 GHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLWDQ   96 (129)
T ss_dssp             TTEEEEEEEEEESCCCCTTSCCBCEEEEEEEESSCSGGGEEECCCCSSBSSCEEEEEEEECSCCGGGGGGCEEEEEEEEC
T ss_pred             CCEEEEEEEEeeCCCCCCCCCCCCCEEEEEEecCCCCCcceecccccCCCCCccccEEEEccCCHHHhcCCeEEEEEEEC
Confidence            4789999999999999999999999999999     45689999999999999999999996443444567999999999


Q ss_pred             CCCCCC--CcccEEEEEeCCcccCCCCceeeeEecc
Q 045058           78 IGDTNS--RSFLGKVCLTGNSFVPLSDSVVLHYPLE  111 (1005)
Q Consensus        78 ~~~~~~--d~~lG~~~i~l~~l~~~~~~~~~w~~L~  111 (1005)
                      +.. ++  |++||++.+++.++...+  ...||+|+
T Consensus        97 d~~-~~~~~~~lG~~~i~l~~l~~~~--~~~W~~Lq  129 (129)
T 2bwq_A           97 ARV-REEESEFLGEILIELETALLDD--EPHWYKLQ  129 (129)
T ss_dssp             --------CEEEEEEEEEGGGCCCSS--CEEEEECC
T ss_pred             CcC-cCcCCceeEEEEEEccccCCCc--CCccEECc
Confidence            654 44  999999999999987654  46899985

>2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus}

Probab=99.71  E-value=5.6e-17  Score=153.89  Aligned_cols=108  Identities=21%  Similarity=0.330  Sum_probs=90.0

Q ss_pred             CcEEEEEEEEeecCCCCCCCCCCCcEEEEEE-----CCeEeeccccCCCCCCceeeEEEEE-eccCccccceEEEEEEEe
Q 045058            3 NLKLGVQVVGAHNLLPKDGKGSSSAFVELYF-----DGQRFRTTIKENDLNPVWNESFYFN-ISDASKLHYLTLEAYIYN   76 (1005)
Q Consensus         3 ~~~l~V~v~~a~~L~~~d~~g~~dpyv~v~~-----~~~~~~T~v~~~t~nP~Wne~f~f~-v~~~~~~~~~~l~v~V~d   76 (1005)
                      .+.|.|+|++|+||+. +..|.+||||+|++     +..++||+++++|+||+|||+|.|. +... .+....|.|+|||
T Consensus        19 ~~~L~V~V~~a~~L~~-~~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~~v~~~-~l~~~~L~~~V~d   96 (134)
T 2b3r_A           19 NGTLFIMVMHIKDLVT-EDGADPNPYVKTYLLPDTHKTSKRKTKISRKTRNPTFNEMLVYSGYSKE-TLRQRELQLSVLS   96 (134)
T ss_dssp             TTEEEEEEEEEECCCC-TTSCCCCEEEEEEEESCSSSCCCEECCCCCSCSSCEEEEEEEEESCCHH-HHTTCEEEEEEEE
T ss_pred             CCEEEEEEEEeeCCCC-CCCCCCCeEEEEEEEcCCCCCceecCCcCcCCCCCCCccEEEECCcCHH-HhCcCEEEEEEEE
Confidence            4789999999999997 77889999999998     3468999999999999999999999 6532 2345689999999


Q ss_pred             CCCCCCCCcccEEEEEeCCcccCCCCceeeeEecccCC
Q 045058           77 NIGDTNSRSFLGKVCLTGNSFVPLSDSVVLHYPLEKRG  114 (1005)
Q Consensus        77 ~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~  114 (1005)
                      ++. .++|++||++.|+|.++..... ...||+|.+++
T Consensus        97 ~d~-~~~~~~lG~~~i~l~~l~~~~~-~~~W~~L~~~~  132 (134)
T 2b3r_A           97 AES-LRENFFLGGITLPLKDFNLSKE-TVKWYQLTAAT  132 (134)
T ss_dssp             CCS-SSCCEEEEEEEEEGGGSCTTSC-EEEEEECBC--
T ss_pred             CCC-CCCCcEEEEEEEEhhhccCCCC-cceeEECCCcc
Confidence            964 5589999999999999976543 46899998754

>2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.71  E-value=5e-17  Score=156.09  Aligned_cols=111  Identities=25%  Similarity=0.348  Sum_probs=94.2

Q ss_pred             CcEEEEEEEEeecCCCCCCCCCCCcEEEEEEC---CeEeeccccCCCCCCceeeEEEEEeccCccccceEEEEEEEeCCC
Q 045058            3 NLKLGVQVVGAHNLLPKDGKGSSSAFVELYFD---GQRFRTTIKENDLNPVWNESFYFNISDASKLHYLTLEAYIYNNIG   79 (1005)
Q Consensus         3 ~~~l~V~v~~a~~L~~~d~~g~~dpyv~v~~~---~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~   79 (1005)
                      .+.|+|+|++|+||+.++..|.+||||+|++.   .++++|+++++++||+|||+|.|.+...+.+....|.|+|||++.
T Consensus        25 ~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~l~i~V~d~d~  104 (141)
T 2d8k_A           25 ESTLTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKVVQRILYLQVLDYDR  104 (141)
T ss_dssp             SCCEEEEEEEEESCCCCSSSSCCCEEEEEEEESCCSSEEECCCCTTCSSCCCCEEEEECSCCHHHHTTSEEEEEEEECCS
T ss_pred             CCEEEEEEEEeECCCCCCCCCCCCcEEEEEEECCCCccEeCceEcCCCCCccccEEEECccCHHHcccCEEEEEEEECCC
Confidence            47899999999999999999999999999994   458999999999999999999999643333345689999999964


Q ss_pred             CCCCCcccEEEEEeCCcccCCCCceeeeEecccCCC
Q 045058           80 DTNSRSFLGKVCLTGNSFVPLSDSVVLHYPLEKRGI  115 (1005)
Q Consensus        80 ~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~  115 (1005)
                       .++|++||++.|++.++.... ....||+|.+.+.
T Consensus       105 -~~~~~~iG~~~i~l~~l~~~~-~~~~W~~L~~~~~  138 (141)
T 2d8k_A          105 -FSRNDPIGEVSIPLNKVDLTQ-MQTFWKDLKPSGP  138 (141)
T ss_dssp             -SSSCEEEEEEEEETTTSCTTS-CEEEEECCEECCC
T ss_pred             -CCCCcEEEEEEEEhhhhcCCC-CccEEEECcCCCC
Confidence             458999999999999997755 4468999988753

>1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2

Probab=99.70  E-value=5.4e-17  Score=156.00  Aligned_cols=110  Identities=21%  Similarity=0.407  Sum_probs=93.6

Q ss_pred             CcEEEEEEEEeecCCCCCCCCCCCcEEEEEE-----CCeEeeccccCCCCCCceeeEEEEEeccCccccceEEEEEEEeC
Q 045058            3 NLKLGVQVVGAHNLLPKDGKGSSSAFVELYF-----DGQRFRTTIKENDLNPVWNESFYFNISDASKLHYLTLEAYIYNN   77 (1005)
Q Consensus         3 ~~~l~V~v~~a~~L~~~d~~g~~dpyv~v~~-----~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~   77 (1005)
                      .+.|.|+|++|++|+.++..|.+||||+|++     +..+++|+++++++||+|||+|.|.+...+.+....|.|+|||+
T Consensus        20 ~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~l~i~V~d~   99 (141)
T 1v27_A           20 GHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLWDQ   99 (141)
T ss_dssp             TTEEEEEEEEEESCCCCSSSCCCCEEEECCCSSCCSSSSCCBCCCCSSCSSCCCCCCCEECSCCTTGGGTCEEEEEEEEB
T ss_pred             CCEEEEEEEEccCCCCcCCCCCCCCEEEEEEecCCCCCcceeCccccCCCCCccccEEEEccCCHHHhcCCEEEEEEEEC
Confidence            4789999999999999999999999999998     35689999999999999999999996443445567999999999


Q ss_pred             CCCCCC--CcccEEEEEeCCcccCCCCceeeeEecccCCC
Q 045058           78 IGDTNS--RSFLGKVCLTGNSFVPLSDSVVLHYPLEKRGI  115 (1005)
Q Consensus        78 ~~~~~~--d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~  115 (1005)
                      +.. +.  |++||++.|+|.++...+  ...||+|.+...
T Consensus       100 d~~-~~~~~~~lG~~~i~l~~l~~~~--~~~W~~L~~~~~  136 (141)
T 1v27_A          100 ARV-REEESEFLGEILIELETALLDD--EPHWYKLQTHDS  136 (141)
T ss_dssp             CSS-SSCCBCCCEEEEEEGGGCCCSS--EEEEEECBCCSS
T ss_pred             CCC-cCCCCceEEEEEEEccccCCCC--CCceEECccccc
Confidence            654 34  999999999999986644  568999987643

>1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2

Probab=99.69  E-value=1.9e-16  Score=151.42  Aligned_cols=110  Identities=15%  Similarity=0.250  Sum_probs=93.5

Q ss_pred             CcEEEEEEEEeecCCCCCCC-CCCCcEEEEEEC---CeEeeccccCCCCCCceeeEEEEE-eccCccccceEEEEEEEeC
Q 045058            3 NLKLGVQVVGAHNLLPKDGK-GSSSAFVELYFD---GQRFRTTIKENDLNPVWNESFYFN-ISDASKLHYLTLEAYIYNN   77 (1005)
Q Consensus         3 ~~~l~V~v~~a~~L~~~d~~-g~~dpyv~v~~~---~~~~~T~v~~~t~nP~Wne~f~f~-v~~~~~~~~~~l~v~V~d~   77 (1005)
                      .+.|.|+|++|+||+.+|.. |.+||||+|++.   .++++|+++++++||+|||+|.|. +.. +.+....|.|+|||+
T Consensus        21 ~~~L~v~v~~a~~L~~~d~~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~v~~-~~~~~~~l~i~V~d~   99 (138)
T 1ugk_A           21 RKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFYGIPY-TQIQELALHFTILSF   99 (138)
T ss_dssp             GTEEEEEEEEEESCCCCBTTTTBCEEEEEEEEETTTCSEEECCCCSSCSSCEEEEEEEEECCCS-TTGGGCEEEEEEEEE
T ss_pred             CCEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEecCCCceEecCcCcCCCCCcEeeEEEEcCcCH-HHhccCEEEEEEEEC
Confidence            47899999999999999985 899999999995   368999999999999999999997 543 234557899999999


Q ss_pred             CCCCCCCcccEEEEEeCCcccCCCCceeeeEecccCC
Q 045058           78 IGDTNSRSFLGKVCLTGNSFVPLSDSVVLHYPLEKRG  114 (1005)
Q Consensus        78 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~  114 (1005)
                      +. .++|++||++.|+|.++.........|++|.++.
T Consensus       100 d~-~~~~~~lG~~~i~l~~l~~~~~~~~~~~~l~~~~  135 (138)
T 1ugk_A          100 DR-FSRDDIIGEVLIPLSGIELSEGKMLMNREIISGP  135 (138)
T ss_dssp             CS-SCCCCCCEEEEEECTTCCCTTCCEEEEEECBSSS
T ss_pred             CC-CCCCcEEEEEEEehhHccCCCCcchhhhhhhcCC
Confidence            64 5689999999999999977665555679998764

>2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus}

Probab=99.69  E-value=1.2e-16  Score=151.47  Aligned_cols=103  Identities=14%  Similarity=0.237  Sum_probs=91.3

Q ss_pred             cceEEEEEEEEecCCCCCCCCCCCCCCCcEEEEEE-----CCEEEEeeeccCCCCceeccEEEEE-EeC---CCceEEEE
Q 045058          594 SIGILELGILNAVGLHPMKTRDGRGTSDTYCVAKY-----GHKWVRTRTLVDNLSPKYNEQYTWE-VFD---PATVLTVG  664 (1005)
Q Consensus       594 ~~g~l~v~i~~a~~L~~~~~~~~~~~~dpyv~~~~-----g~~~~~T~~~~~t~nP~wne~f~~~-v~~---~~~~l~i~  664 (1005)
                      ..|.|.|+|++|+||+.    +..|.+||||++++     +....||+++++|+||+|||+|.|. +..   ....|.|+
T Consensus        18 ~~~~L~V~V~~a~~L~~----~~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~~v~~~~l~~~~L~~~   93 (134)
T 2b3r_A           18 RNGTLFIMVMHIKDLVT----EDGADPNPYVKTYLLPDTHKTSKRKTKISRKTRNPTFNEMLVYSGYSKETLRQRELQLS   93 (134)
T ss_dssp             ETTEEEEEEEEEECCCC----TTSCCCCEEEEEEEESCSSSCCCEECCCCCSCSSCEEEEEEEEESCCHHHHTTCEEEEE
T ss_pred             cCCEEEEEEEEeeCCCC----CCCCCCCeEEEEEEEcCCCCCceecCCcCcCCCCCCCccEEEECCcCHHHhCcCEEEEE
Confidence            35899999999999995    34788999999999     4467899999999999999999999 753   45799999


Q ss_pred             EEeCCCcCCCCCCCCCcccEEEEEEcccccCCCEEeeeEeee
Q 045058          665 VFDNSQLGEKSNGNKDLKIGKVRIRISTLETGRIYTHSYPLL  706 (1005)
Q Consensus       665 v~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~  706 (1005)
                      |||++.++      ++++||.+.|+|+++..+.....||+|.
T Consensus        94 V~d~d~~~------~~~~lG~~~i~l~~l~~~~~~~~W~~L~  129 (134)
T 2b3r_A           94 VLSAESLR------ENFFLGGITLPLKDFNLSKETVKWYQLT  129 (134)
T ss_dssp             EEECCSSS------CCEEEEEEEEEGGGSCTTSCEEEEEECB
T ss_pred             EEECCCCC------CCcEEEEEEEEhhhccCCCCcceeEECC
Confidence            99999876      7899999999999999888889999996

>2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.69  E-value=3.6e-16  Score=150.10  Aligned_cols=107  Identities=23%  Similarity=0.310  Sum_probs=93.3

Q ss_pred             cceEEEEEEEEecCCCCCCCCCCCCCCCcEEEEEEC---CEEEEeeeccCCCCceeccEEEEEEeC----CCceEEEEEE
Q 045058          594 SIGILELGILNAVGLHPMKTRDGRGTSDTYCVAKYG---HKWVRTRTLVDNLSPKYNEQYTWEVFD----PATVLTVGVF  666 (1005)
Q Consensus       594 ~~g~l~v~i~~a~~L~~~~~~~~~~~~dpyv~~~~g---~~~~~T~~~~~t~nP~wne~f~~~v~~----~~~~l~i~v~  666 (1005)
                      ..+.|+|+|++|+||++++   ..|.+||||++.+.   ...+||+++++++||+|||.|.|.+..    ....|.|+||
T Consensus        24 ~~~~L~v~v~~a~~L~~~d---~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~l~i~V~  100 (141)
T 2d8k_A           24 QESTLTVKIMKAQELPAKD---FSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKVVQRILYLQVL  100 (141)
T ss_dssp             SSCCEEEEEEEEESCCCCS---SSSCCCEEEEEEEESCCSSEEECCCCTTCSSCCCCEEEEECSCCHHHHTTSEEEEEEE
T ss_pred             CCCEEEEEEEEeECCCCCC---CCCCCCcEEEEEEECCCCccEeCceEcCCCCCccccEEEECccCHHHcccCEEEEEEE
Confidence            4589999999999999754   57889999999993   457899999999999999999998632    3578999999


Q ss_pred             eCCCcCCCCCCCCCcccEEEEEEcccccCCCEEeeeEeeeecC
Q 045058          667 DNSQLGEKSNGNKDLKIGKVRIRISTLETGRIYTHSYPLLVLH  709 (1005)
Q Consensus       667 d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~  709 (1005)
                      |++.++      +|++||.+.|+|.++..+.....||+|....
T Consensus       101 d~d~~~------~~~~iG~~~i~l~~l~~~~~~~~W~~L~~~~  137 (141)
T 2d8k_A          101 DYDRFS------RNDPIGEVSIPLNKVDLTQMQTFWKDLKPSG  137 (141)
T ss_dssp             ECCSSS------SCEEEEEEEEETTTSCTTSCEEEEECCEECC
T ss_pred             ECCCCC------CCcEEEEEEEEhhhhcCCCCccEEEECcCCC
Confidence            999876      8999999999999999888788999997543

>2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1

Probab=99.68  E-value=1.8e-16  Score=156.76  Aligned_cols=126  Identities=18%  Similarity=0.159  Sum_probs=102.3

Q ss_pred             eeEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeeecCCCCCeeeeEEEEeecCCCCcEEEEEEEeCC-CCCCce
Q 045058          269 MYFLYVRVVKARELPAMDLTGSIDPFVEVKIGNYKGITKHYEKNQNPQWHQVFAFSRDRMQASVLEVVIKDKD-LVKDDF  347 (1005)
Q Consensus       269 ~~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~~~~~kT~~~~~~~nP~wne~f~f~~~~~~~~~l~v~V~d~~-~~~d~~  347 (1005)
                      .+.|.|+|++|++|+..+..+.+||||+++++++.++|+++++++||+|||+|.|.+..  ...|.|+|||++ +++|++
T Consensus        35 ~~~L~V~V~~A~~L~~~~~~~~sDPYv~v~~~~~~~kT~v~~~tlnP~Wne~f~f~v~~--~~~L~~~V~D~d~~~~dd~  112 (173)
T 2nq3_A           35 KSQLQITVISAKLKENKKNWFGPSPYVEVTVDGQSKKTEKCNNTNSPKWKQPLTVIVTP--VSKLHFRVWSHQTLKSDVL  112 (173)
T ss_dssp             CEEEEEEEEEEEECCCC--CCCCCEEEEEEETTEEEECCCCSSCSSCEEEEEEEEEECT--TCEEEEEEEECCSSSCCEE
T ss_pred             ceEEEEEEEEeECCCCcccCCCCCeEEEEEECCEEeEccccCCCCCCeECCEEEEEeCC--CCEEEEEEEECCCCCCCce
Confidence            36899999999999944434559999999999989999999999999999999999864  578999999999 778999


Q ss_pred             eEEEEEEceecCCCCCCCCCCCCeEEEeecCCCC-ccceEEEEEEEEecc
Q 045058          348 VGIVRFDINEVPLRVPPDSPLAPEWYRLEDKKGE-KIKGELMLAVWIGTQ  396 (1005)
Q Consensus       348 lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~-~~~G~i~l~~~~~~~  396 (1005)
                      ||++.++|.++.............|++|....+. ...|+|.+++.+.+.
T Consensus       113 lG~~~i~l~~l~~~~~~~~~~~~~~~~L~~~~~~~~~~G~L~v~l~~l~~  162 (173)
T 2nq3_A          113 LGTAALDIYETLKSNNMKLEEVVVTLQLGGDKEPTETIGDLSICLDGLQL  162 (173)
T ss_dssp             EEEEEEEHHHHHHHTTTEESSEEEEEEEEESSCTTSEEEEEEEEEESEEC
T ss_pred             EEEEEEEHHHhcccCCCCcceeEEEEECccCCCCCcccEEEEEEEeeeec
Confidence            9999999999875422111223679999886432 267999999987653

>3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens}

Probab=99.68  E-value=7.7e-17  Score=156.11  Aligned_cols=111  Identities=23%  Similarity=0.328  Sum_probs=92.5

Q ss_pred             CcEEEEEEEEeecCCCCC-CCCCCCcEEEEEEC-----CeEeeccccCCCCCCceeeEEEEEeccCccccceEEEEEEEe
Q 045058            3 NLKLGVQVVGAHNLLPKD-GKGSSSAFVELYFD-----GQRFRTTIKENDLNPVWNESFYFNISDASKLHYLTLEAYIYN   76 (1005)
Q Consensus         3 ~~~l~V~v~~a~~L~~~d-~~g~~dpyv~v~~~-----~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d   76 (1005)
                      .+.|.|+|++|+||+.++ ..|.+||||+|++.     ..+++|+++++++||+|||+|.|.+...+ +....|.|+|||
T Consensus        22 ~~~L~V~v~~a~~L~~~d~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~-~~~~~L~~~V~d  100 (148)
T 3fdw_A           22 TQSLVVHVKECHQLAYADEAKKRSNPYVKTYLLPDKSRQGKRKTSIKRDTVNPLYDETLRYEIPESL-LAQRTLQFSVWH  100 (148)
T ss_dssp             TTEEEEEEEEEESCCCSBTTTTBCCEEEEEEEETCCSGGGEEECCCCSSCSSCEEEEEEEEECCSTT-GGGCEEEEEEEE
T ss_pred             CCEEEEEEEEecCCCCcccCCCCCCeEEEEEEEcCCcccCccccccCCCCCCCcEeeEEEEEeChhH-hCceEEEEEEEE
Confidence            478999999999999988 57899999999996     34899999999999999999999986543 445689999999


Q ss_pred             CCCCCCCCcccEEEEEeCCcccCCCCceeeeEecccCCCc
Q 045058           77 NIGDTNSRSFLGKVCLTGNSFVPLSDSVVLHYPLEKRGIF  116 (1005)
Q Consensus        77 ~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~  116 (1005)
                      ++. .++|++||++.|+|.++...... ..||+|.+++..
T Consensus       101 ~d~-~~~~~~iG~~~i~l~~l~~~~~~-~~W~~L~~~~~~  138 (148)
T 3fdw_A          101 HGR-FGRNTFLGEAEIQMDSWKLDKKL-DHCLPLHGKISA  138 (148)
T ss_dssp             ECG-GGCEEEEEEEEEEHHHHHHHCCS-EEEEECBCC---
T ss_pred             CCC-CcCCcEEEEEEEEcccccccCCc-cceEECcCcccc
Confidence            954 45899999999999998665433 579999987643

>3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.7.1.2 PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A*

Probab=99.68  E-value=1.3e-16  Score=153.69  Aligned_cols=107  Identities=24%  Similarity=0.328  Sum_probs=91.9

Q ss_pred             CcEEEEEEEEeecCCCCCCCCCCCcEEEEEE---CCeEeeccccCCCCCCceeeEEEEEeccCccccceEEEEEEEeCCC
Q 045058            3 NLKLGVQVVGAHNLLPKDGKGSSSAFVELYF---DGQRFRTTIKENDLNPVWNESFYFNISDASKLHYLTLEAYIYNNIG   79 (1005)
Q Consensus         3 ~~~l~V~v~~a~~L~~~d~~g~~dpyv~v~~---~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~   79 (1005)
                      .+.|+|+|++|++|+.++..|.+||||+|++   +.++++|+++++++||+|||+|.|.+...+ +....|.|+|||++.
T Consensus        33 ~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~-l~~~~L~i~V~d~d~  111 (143)
T 3f04_A           33 NNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSE-LGGKTLVMAVYDFDR  111 (143)
T ss_dssp             TTEEEEEEEEEECCCCBGGGBCCCEEEEEEEESCCSCCEECCCCCSCSSCEEEEEEEECCCHHH-HTTCEEEEEEEECCS
T ss_pred             CCEEEEEEEEecCCCCCCCCCCcCcEEEEEEECCCCccEECccCcCCCCCcCcCeEEEeecHhh-cCCCEEEEEEEeCCC
Confidence            5789999999999999998899999999999   456899999999999999999999985432 344689999999964


Q ss_pred             CCCCCcccEEEEEeCCcccCCCCceeeeEeccc
Q 045058           80 DTNSRSFLGKVCLTGNSFVPLSDSVVLHYPLEK  112 (1005)
Q Consensus        80 ~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~  112 (1005)
                       .++|++||++.++|.++..... ...||+|++
T Consensus       112 -~~~~~~iG~~~i~l~~l~~~~~-~~~W~~L~~  142 (143)
T 3f04_A          112 -FSKHDIIGEFKVPMNTVDFGHV-TEEWRDLQS  142 (143)
T ss_dssp             -SSCCEEEEEEEEEGGGCCTTSC-EEEEEECBC
T ss_pred             -CCCCceEEEEEEEHHHccCCCC-cceEEECcC
Confidence             4589999999999999876543 468999975

>1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.68  E-value=1.9e-16  Score=153.98  Aligned_cols=108  Identities=24%  Similarity=0.329  Sum_probs=92.0

Q ss_pred             CcEEEEEEEEeecCCCCCCCCCCCcEEEEEE---CCeEeeccccCCCCCCceeeEEEEEeccCccccceEEEEEEEeCCC
Q 045058            3 NLKLGVQVVGAHNLLPKDGKGSSSAFVELYF---DGQRFRTTIKENDLNPVWNESFYFNISDASKLHYLTLEAYIYNNIG   79 (1005)
Q Consensus         3 ~~~l~V~v~~a~~L~~~d~~g~~dpyv~v~~---~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~   79 (1005)
                      .+.|+|+|++|+||+.+|..|.+||||+|++   ++++++|+++++++||+|||+|.|.+...+ +....|.|+|||++.
T Consensus        41 ~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~-l~~~~L~i~V~d~d~  119 (152)
T 1rsy_A           41 NNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSE-LGGKTLVMAVYDFDR  119 (152)
T ss_dssp             TTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETTCCSCEECCCCTTCSSCEEEEEEEECCCHHH-HTTCEEEEEEEECCS
T ss_pred             CCEEEEEEEEeECCCCccCCCCcCeEEEEEEEcCCCceEeccccCCCCCCcCcccEEEeecHHH-cCCCEEEEEEEECCC
Confidence            5789999999999999999999999999999   346899999999999999999999985432 334689999999964


Q ss_pred             CCCCCcccEEEEEeCCcccCCCCceeeeEecccC
Q 045058           80 DTNSRSFLGKVCLTGNSFVPLSDSVVLHYPLEKR  113 (1005)
Q Consensus        80 ~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~  113 (1005)
                       .++|++||++.|++.++.... ....||+|.+.
T Consensus       120 -~~~~~~iG~~~i~l~~l~~~~-~~~~W~~L~~~  151 (152)
T 1rsy_A          120 -FSKHDIIGEFKVPMNTVDFGH-VTEEWRDLQSA  151 (152)
T ss_dssp             -SSCCEEEEEEEEEGGGCCCSS-CEEEEEECBCC
T ss_pred             -CCCCcEEEEEEEEchhccCCC-CcceEEECCCC
Confidence             458999999999999986644 44689999753

>3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens}

Probab=99.68  E-value=7.6e-17  Score=156.16  Aligned_cols=110  Identities=16%  Similarity=0.282  Sum_probs=93.3

Q ss_pred             CcceEEEEEEEEecCCCCCCCCCCCCCCCcEEEEEEC-----CEEEEeeeccCCCCceeccEEEEEEeCC---CceEEEE
Q 045058          593 PSIGILELGILNAVGLHPMKTRDGRGTSDTYCVAKYG-----HKWVRTRTLVDNLSPKYNEQYTWEVFDP---ATVLTVG  664 (1005)
Q Consensus       593 ~~~g~l~v~i~~a~~L~~~~~~~~~~~~dpyv~~~~g-----~~~~~T~~~~~t~nP~wne~f~~~v~~~---~~~l~i~  664 (1005)
                      +..|.|.|+|++|+||++++  +..+.+||||++.++     ...++|+++++|+||+|||+|.|.+...   ...|.|+
T Consensus        20 ~~~~~L~V~v~~a~~L~~~d--~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~~L~~~   97 (148)
T 3fdw_A           20 QQTQSLVVHVKECHQLAYAD--EAKKRSNPYVKTYLLPDKSRQGKRKTSIKRDTVNPLYDETLRYEIPESLLAQRTLQFS   97 (148)
T ss_dssp             TTTTEEEEEEEEEESCCCSB--TTTTBCCEEEEEEEETCCSGGGEEECCCCSSCSSCEEEEEEEEECCSTTGGGCEEEEE
T ss_pred             CCCCEEEEEEEEecCCCCcc--cCCCCCCeEEEEEEEcCCcccCccccccCCCCCCCcEeeEEEEEeChhHhCceEEEEE
Confidence            34589999999999999764  246789999999995     3478999999999999999999998753   4579999


Q ss_pred             EEeCCCcCCCCCCCCCcccEEEEEEcccccCCCEEeeeEeeeecCC
Q 045058          665 VFDNSQLGEKSNGNKDLKIGKVRIRISTLETGRIYTHSYPLLVLHP  710 (1005)
Q Consensus       665 v~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~  710 (1005)
                      |||++.++      +|++||.+.|+|+++..+.....||+|.....
T Consensus        98 V~d~d~~~------~~~~iG~~~i~l~~l~~~~~~~~W~~L~~~~~  137 (148)
T 3fdw_A           98 VWHHGRFG------RNTFLGEAEIQMDSWKLDKKLDHCLPLHGKIS  137 (148)
T ss_dssp             EEEECGGG------CEEEEEEEEEEHHHHHHHCCSEEEEECBCC--
T ss_pred             EEECCCCc------CCcEEEEEEEEcccccccCCccceEECcCccc
Confidence            99999876      89999999999999987776789999975443

>2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.67  E-value=1.7e-16  Score=152.68  Aligned_cols=110  Identities=28%  Similarity=0.351  Sum_probs=91.2

Q ss_pred             CcEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eEeeccccCCCCCCceeeEEEEEeccCccccceEEEEEEEeC
Q 045058            3 NLKLGVQVVGAHNLLPKDGKGSSSAFVELYFDG-----QRFRTTIKENDLNPVWNESFYFNISDASKLHYLTLEAYIYNN   77 (1005)
Q Consensus         3 ~~~l~V~v~~a~~L~~~d~~g~~dpyv~v~~~~-----~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~   77 (1005)
                      .+.|.|+|++|+||+.++..| +||||+|++..     .+++|+++++|+||+|||+|.|.+...+ +....|.|+|||+
T Consensus        23 ~~~L~v~v~~a~~L~~~d~~g-~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~-l~~~~L~i~V~d~  100 (142)
T 2dmg_A           23 RNKLIVVVHACRNLIAFSEDG-SDPYVRMYLLPDKRRSGRRKTHVSKKTLNPVFDQSFDFSVSLPE-VQRRTLDVAVKNS  100 (142)
T ss_dssp             TTEEEEEEEEEECCCCSSTTC-CCEEEEEEEESCCCSSSCEECCCCCSCSSCEEEEEEEECCCHHH-HHHCEEEEEEEEC
T ss_pred             CCEEEEEEEEeECCCCCCCCC-CCeeEEEEEEcCCCCCCcccCCccCCCCCCCcCceEEEEecHHH-hCcCEEEEEEEEC
Confidence            478999999999999999999 99999999932     5789999999999999999999985422 3346899999999


Q ss_pred             CCCCC-CCcccEEEEEeCCcccCCCCceeeeEecccCCC
Q 045058           78 IGDTN-SRSFLGKVCLTGNSFVPLSDSVVLHYPLEKRGI  115 (1005)
Q Consensus        78 ~~~~~-~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~  115 (1005)
                      +.... .|++||++.|+|.++.... ....||+|.+.+.
T Consensus       101 d~~~~~~~~~iG~~~i~l~~~~~~~-~~~~W~~L~~~~~  138 (142)
T 2dmg_A          101 GGFLSKDKGLLGKVLVALASEELAK-GWTQWYDLTEDSG  138 (142)
T ss_dssp             CCSSCCSCCCCEEEEEECCCSTTTT-CBCCBCCCBCSCS
T ss_pred             CCccccCCcEEEEEEEecccccccc-cccceeeccCCCC
Confidence            65443 3579999999999986654 3457999987753

>1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.67  E-value=1.7e-16  Score=154.35  Aligned_cols=105  Identities=27%  Similarity=0.371  Sum_probs=93.2

Q ss_pred             CcceEEEEEEEEecCCCCCCCCCCCCCCCcEEEEEE---CCEEEEeeeccCCCCceeccEEEEEEeC---CCceEEEEEE
Q 045058          593 PSIGILELGILNAVGLHPMKTRDGRGTSDTYCVAKY---GHKWVRTRTLVDNLSPKYNEQYTWEVFD---PATVLTVGVF  666 (1005)
Q Consensus       593 ~~~g~l~v~i~~a~~L~~~~~~~~~~~~dpyv~~~~---g~~~~~T~~~~~t~nP~wne~f~~~v~~---~~~~l~i~v~  666 (1005)
                      +..+.|+|+|++|+||++++   ..+.+||||++.+   +.+.+||+++++++||+|||.|.|.+..   ....|.|+||
T Consensus        39 ~~~~~L~V~v~~a~~L~~~d---~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~  115 (152)
T 1rsy_A           39 FQNNQLLVGIIQAAELPALD---MGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVY  115 (152)
T ss_dssp             TTTTEEEEEEEEEESCCCCS---TTSCCCEEEEEEEETTCCSCEECCCCTTCSSCEEEEEEEECCCHHHHTTCEEEEEEE
T ss_pred             CCCCEEEEEEEEeECCCCcc---CCCCcCeEEEEEEEcCCCceEeccccCCCCCCcCcccEEEeecHHHcCCCEEEEEEE
Confidence            34589999999999999754   4788999999999   4457899999999999999999999864   3679999999


Q ss_pred             eCCCcCCCCCCCCCcccEEEEEEcccccCCCEEeeeEeee
Q 045058          667 DNSQLGEKSNGNKDLKIGKVRIRISTLETGRIYTHSYPLL  706 (1005)
Q Consensus       667 d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~  706 (1005)
                      |++.++      +|++||.+.|+|+++..+....+||+|.
T Consensus       116 d~d~~~------~~~~iG~~~i~l~~l~~~~~~~~W~~L~  149 (152)
T 1rsy_A          116 DFDRFS------KHDIIGEFKVPMNTVDFGHVTEEWRDLQ  149 (152)
T ss_dssp             ECCSSS------CCEEEEEEEEEGGGCCCSSCEEEEEECB
T ss_pred             ECCCCC------CCcEEEEEEEEchhccCCCCcceEEECC
Confidence            999776      8999999999999999888889999996

>1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.67  E-value=5.4e-17  Score=156.13  Aligned_cols=109  Identities=31%  Similarity=0.491  Sum_probs=91.5

Q ss_pred             CcEEEEEEEEeecCCCCCCCCCCCcEEEEEECCe--------------EeeccccCCCCCCceeeEEEEE-eccCccccc
Q 045058            3 NLKLGVQVVGAHNLLPKDGKGSSSAFVELYFDGQ--------------RFRTTIKENDLNPVWNESFYFN-ISDASKLHY   67 (1005)
Q Consensus         3 ~~~l~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~--------------~~~T~v~~~t~nP~Wne~f~f~-v~~~~~~~~   67 (1005)
                      .+.|.|+|++|+||+.+|..|.+||||+|++.+.              +++|+++++|+||+|||+|.|. +.. +.+..
T Consensus        17 ~~~L~V~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~v~~-~~l~~   95 (142)
T 1rh8_A           17 LGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEWNQTVIYKSISM-EQLMK   95 (142)
T ss_dssp             TTEEEEEEEEEESCCCCSSSSCSCCEEEEEETTSSCCCEECCCCCHHHHTTTTTTHHHHSCEEEEEEEECSCCH-HHHTT
T ss_pred             CCEEEEEEEEecCCCCCCCCCCCCceEEEEEecCCCcccccccccccceeeccccCCCCCCCCCCEEEECCcCH-HHccC
Confidence            3689999999999999999999999999999763              5899999999999999999998 532 22345


Q ss_pred             eEEEEEEEeCCCCCCCCcccEEEEEeCCcccCCCCceeeeEecccCC
Q 045058           68 LTLEAYIYNNIGDTNSRSFLGKVCLTGNSFVPLSDSVVLHYPLEKRG  114 (1005)
Q Consensus        68 ~~l~v~V~d~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~  114 (1005)
                      ..|.|+|||++. .++|++||++.|+|.++..... ...||+|.+++
T Consensus        96 ~~l~i~V~d~d~-~~~~~~lG~~~i~l~~l~~~~~-~~~W~~L~~~~  140 (142)
T 1rh8_A           96 KTLEVTVWDYDR-FSSNDFLGEVLIDLSSTSHLDN-TPRWYPLKEQT  140 (142)
T ss_dssp             CEEEEEEEEECS-SSCEEEEEEEEEETTSCGGGTT-CCEEEECBCCC
T ss_pred             CEEEEEEEECCC-CCCCceEEEEEEeccccccCCC-CCeEEECCccC
Confidence            689999999964 5689999999999999865443 35899998765

>3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} SCOP: b.7.1.0

Probab=99.66  E-value=2.9e-16  Score=152.80  Aligned_cols=110  Identities=15%  Similarity=0.297  Sum_probs=90.2

Q ss_pred             CCcEEEEEEEEeecCCCCCCCCCCCcEEEEEEC-----CeEeeccccCCCCCCceeeEEEEEeccCccccceEEEEEEEe
Q 045058            2 RNLKLGVQVVGAHNLLPKDGKGSSSAFVELYFD-----GQRFRTTIKENDLNPVWNESFYFNISDASKLHYLTLEAYIYN   76 (1005)
Q Consensus         2 ~~~~l~V~v~~a~~L~~~d~~g~~dpyv~v~~~-----~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d   76 (1005)
                      ..+.|.|+|++|+||+.++ .|.+||||+|++.     ..+++|+++++|+||+|||+|.|.+...+ .. ..|.|+|||
T Consensus        25 ~~~~L~V~v~~a~~L~~~d-~g~~Dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~-~~-~~L~i~V~d  101 (153)
T 3fbk_A           25 QDRVLLLHIIEGKGLISKQ-PGTCDPYVKISLIPEDSRLRHQKTQTVPDCRDPAFHEHFFFPVQEED-DQ-KRLLVTVWN  101 (153)
T ss_dssp             SSSEEEEEEEEEESCCCCS-SSCCCEEEEEEEESCSCCTTCEECCCCTTCSSCEEEEEEEEECCGGG-TT-SEEEEEEEE
T ss_pred             CCCEEEEEEEEeeCCCCCC-CCCCCEEEEEEEEcCCCCccEEeccccCCCCCCccccEEEEecccHH-hC-CEEEEEEEe
Confidence            3578999999999999998 6899999999982     35799999999999999999999985432 22 359999999


Q ss_pred             CCCCCCCCcccEEEEEeCCcccCCCCceeeeEecccCC
Q 045058           77 NIGDTNSRSFLGKVCLTGNSFVPLSDSVVLHYPLEKRG  114 (1005)
Q Consensus        77 ~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~  114 (1005)
                      ++.....|++||++.++|.++...+.....||+|.++.
T Consensus       102 ~d~~~~~d~~lG~~~i~l~~l~~~~~~~~~W~~L~~~~  139 (153)
T 3fbk_A          102 RASQSRQSGLIGCMSFGVKSLLTPDKEISGWYYLLGEH  139 (153)
T ss_dssp             CCSSGGGCEEEEEEEEEHHHHTC--CCEEEEEECBCTT
T ss_pred             CCCCCCCCcEEEEEEEEHHHhcCCCCccccEEECCChh
Confidence            96543239999999999999975445556899998764

>1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.66  E-value=4.1e-16  Score=151.15  Aligned_cols=106  Identities=27%  Similarity=0.370  Sum_probs=91.5

Q ss_pred             CcEEEEEEEEeecCCCCCCCCCCCcEEEEEEC-----CeEeeccccCCCCCCceeeEEEEEeccCccccceEEEEEEEeC
Q 045058            3 NLKLGVQVVGAHNLLPKDGKGSSSAFVELYFD-----GQRFRTTIKENDLNPVWNESFYFNISDASKLHYLTLEAYIYNN   77 (1005)
Q Consensus         3 ~~~l~V~v~~a~~L~~~d~~g~~dpyv~v~~~-----~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~   77 (1005)
                      .+.|.|+|++|+||+.++..|.+||||+|++.     ..+++|+++++++||+|||+|.|.+...+.  ...|.|+|||+
T Consensus        30 ~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~--~~~L~i~V~d~  107 (149)
T 1a25_A           30 REVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKESDK--DRRLSVEIWDW  107 (149)
T ss_dssp             SSEEEEEEEEEESCCCCSTTSCCCEEEEEEEESCTTCSSCEECCCCSSCSSCEEEEEEEEECCSGGG--GCEEEEEEEEC
T ss_pred             CCEEEEEEEEeeCCCCCCCCCCcCeEEEEEEECCCCCcceEecceeCCCCCCcCCcEEEEEeccccC--CCEEEEEEEEC
Confidence            46899999999999999999999999999996     358999999999999999999999865431  35799999999


Q ss_pred             CCCCCCCcccEEEEEeCCcccCCCCceeeeEecccC
Q 045058           78 IGDTNSRSFLGKVCLTGNSFVPLSDSVVLHYPLEKR  113 (1005)
Q Consensus        78 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~  113 (1005)
                      +. .++|++||++.|+|.++....  ...||+|.+.
T Consensus       108 d~-~~~~~~iG~~~i~l~~l~~~~--~~~W~~L~~~  140 (149)
T 1a25_A          108 DL-TSRNDFMGSLSFGISELQKAG--VDGWFKLLSQ  140 (149)
T ss_dssp             CS-SSCCEEEEEEEEEHHHHTTCC--EEEEEECBCH
T ss_pred             CC-CCCCCEEEEEEEEHHHhCcCc--cCCeEEccCC
Confidence            54 458999999999999987653  4689999865

>3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} SCOP: b.7.1.0

Probab=99.66  E-value=4.4e-16  Score=151.59  Aligned_cols=106  Identities=25%  Similarity=0.326  Sum_probs=90.7

Q ss_pred             CcceEEEEEEEEecCCCCCCCCCCCCCCCcEEEEEE-----CCEEEEeeeccCCCCceeccEEEEEEe--CCCceEEEEE
Q 045058          593 PSIGILELGILNAVGLHPMKTRDGRGTSDTYCVAKY-----GHKWVRTRTLVDNLSPKYNEQYTWEVF--DPATVLTVGV  665 (1005)
Q Consensus       593 ~~~g~l~v~i~~a~~L~~~~~~~~~~~~dpyv~~~~-----g~~~~~T~~~~~t~nP~wne~f~~~v~--~~~~~l~i~v  665 (1005)
                      +..|.|.|+|++|+||++++    .|.+||||++.+     +...++|+++++|+||+|||+|.|.+.  +....|.|+|
T Consensus        24 ~~~~~L~V~v~~a~~L~~~d----~g~~Dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~L~i~V   99 (153)
T 3fbk_A           24 AQDRVLLLHIIEGKGLISKQ----PGTCDPYVKISLIPEDSRLRHQKTQTVPDCRDPAFHEHFFFPVQEEDDQKRLLVTV   99 (153)
T ss_dssp             ESSSEEEEEEEEEESCCCCS----SSCCCEEEEEEEESCSCCTTCEECCCCTTCSSCEEEEEEEEECCGGGTTSEEEEEE
T ss_pred             CCCCEEEEEEEEeeCCCCCC----CCCCCEEEEEEEEcCCCCccEEeccccCCCCCCccccEEEEecccHHhCCEEEEEE
Confidence            34699999999999999764    478999999999     235689999999999999999999994  4556799999


Q ss_pred             EeCCCcCCCCCCCC-CcccEEEEEEcccccC-CCEEeeeEeeeec
Q 045058          666 FDNSQLGEKSNGNK-DLKIGKVRIRISTLET-GRIYTHSYPLLVL  708 (1005)
Q Consensus       666 ~d~~~~~~~~~~~~-d~~lG~~~i~l~~l~~-~~~~~~~~~L~~~  708 (1005)
                      ||++.++      + |++||.+.|+|+++.. +.....||+|...
T Consensus       100 ~d~d~~~------~~d~~lG~~~i~l~~l~~~~~~~~~W~~L~~~  138 (153)
T 3fbk_A          100 WNRASQS------RQSGLIGCMSFGVKSLLTPDKEISGWYYLLGE  138 (153)
T ss_dssp             EECCSSG------GGCEEEEEEEEEHHHHTC--CCEEEEEECBCT
T ss_pred             EeCCCCC------CCCcEEEEEEEEHHHhcCCCCccccEEECCCh
Confidence            9998765      5 8999999999999985 6778899999743

>1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2

Probab=99.65  E-value=8.1e-16  Score=146.73  Aligned_cols=106  Identities=18%  Similarity=0.215  Sum_probs=88.7

Q ss_pred             CcEEEEEEEEeecCCCCCCCCCCCcEEEEEEC---C-eEeeccccCCCCCCceeeEEEEEeccCccccceEEEEEEEeCC
Q 045058            3 NLKLGVQVVGAHNLLPKDGKGSSSAFVELYFD---G-QRFRTTIKENDLNPVWNESFYFNISDASKLHYLTLEAYIYNNI   78 (1005)
Q Consensus         3 ~~~l~V~v~~a~~L~~~d~~g~~dpyv~v~~~---~-~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~   78 (1005)
                      .+.|+|+|++|+   ++|..|.+||||+|++.   + .+++|+++++|+||+|||+|.|.+...+ +....|.|.|||++
T Consensus        25 ~~~L~V~v~~a~---~~d~~g~sDPyv~v~l~~~~~~~~~kT~v~~~tlnP~wnE~f~f~v~~~~-l~~~~L~~~V~d~d  100 (138)
T 1wfm_A           25 KAELFVTRLEAV---TSNHDGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPLAEEE-LPTATLTLTLRTCD  100 (138)
T ss_dssp             TTEEEEEEEEEE---CCCCSSCCCEEEEEEEEETTEEEEEECCCCCCCSSEECSSCEEEECCTTS-STTCEEEEEEEECC
T ss_pred             CCEEEEEEEEEE---cCCCCCCcceEEEEEEEcCCCcccEecccCcCCCCCcCCceEEEEecHHH-cCCCEEEEEEEECC
Confidence            578999999999   46788999999999993   3 3689999999999999999999986543 45578999999996


Q ss_pred             CCCCCCcccEEEEEeCCcccCCCCceeeeEecccCC
Q 045058           79 GDTNSRSFLGKVCLTGNSFVPLSDSVVLHYPLEKRG  114 (1005)
Q Consensus        79 ~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~  114 (1005)
                      . .++|++||++.++|.++.... ....|++|.+..
T Consensus       101 ~-~~~dd~lG~~~i~l~~l~~~~-~~~~W~~L~~~~  134 (138)
T 1wfm_A          101 R-FSRHSVAGELRLGLDGTSVPL-GAAQWGELKTSG  134 (138)
T ss_dssp             S-SCTTSCSEEEEEESSSSSSCT-TCCEEEECCCCS
T ss_pred             C-CCCCcEEEEEEEEcccccCcc-cccceeeCcCCC
Confidence            4 568999999999999986543 345799998754

>2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A

Probab=99.65  E-value=3.8e-16  Score=150.11  Aligned_cols=108  Identities=23%  Similarity=0.397  Sum_probs=91.0

Q ss_pred             CcEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eEeeccccCCCCCCceeeEEEEE-eccCccccceEEEEEEEe
Q 045058            3 NLKLGVQVVGAHNLLPKDGKGSSSAFVELYFDG-----QRFRTTIKENDLNPVWNESFYFN-ISDASKLHYLTLEAYIYN   76 (1005)
Q Consensus         3 ~~~l~V~v~~a~~L~~~d~~g~~dpyv~v~~~~-----~~~~T~v~~~t~nP~Wne~f~f~-v~~~~~~~~~~l~v~V~d   76 (1005)
                      .+.|.|+|++|+||+.++..|.+||||+|++.+     .+++|+++++++||+|||+|.|. +.. +.+....|.|+|||
T Consensus        28 ~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~-~~~~~~~l~i~V~d  106 (142)
T 2chd_A           28 NSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQYHGITE-EDMQRKTLRISVCD  106 (142)
T ss_dssp             GTEEEEEEEEEESCCCCCTTSCCCEEEEEEEESCCSGGGEEECCCCCSCSSCEEEEEEEEESCCH-HHHHHCEEEEEEEE
T ss_pred             CCEEEEEEEEecCCCCCCCCCCCCCEEEEEEEcCCCCcceeeCCcCCCCCCCcCcCEEEEcccCH-HHccCCEEEEEEEE
Confidence            478999999999999999999999999999965     68999999999999999999999 532 22334689999999


Q ss_pred             CCCCCCCCcccEEEEEeCCcccCCCCceeeeEecccC
Q 045058           77 NIGDTNSRSFLGKVCLTGNSFVPLSDSVVLHYPLEKR  113 (1005)
Q Consensus        77 ~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~  113 (1005)
                      ++. .++|++||++.|++.++..... ...|++|+++
T Consensus       107 ~d~-~~~d~~iG~~~i~l~~l~~~~~-~~~~~~L~~p  141 (142)
T 2chd_A          107 EDK-FGHNEFIGETRFSLKKLKANQR-KNFNICLERV  141 (142)
T ss_dssp             ECT-TSCEEEEEEEEEEGGGCCTTCC-EEEEEECBCC
T ss_pred             CCC-CCCCcEEEEEEEEHHHcCCCCc-cEEEEecccC
Confidence            954 4589999999999999876554 3567998753

>2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens}

Probab=99.65  E-value=1.9e-16  Score=153.65  Aligned_cols=113  Identities=18%  Similarity=0.222  Sum_probs=95.2

Q ss_pred             cceeeeccccceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC---e---eeeeeeecCCCCCeeeeEEEEeecC--CC
Q 045058          258 KTASTYDLVERMYFLYVRVVKARELPAMDLTGSIDPFVEVKIGN---Y---KGITKHYEKNQNPQWHQVFAFSRDR--MQ  329 (1005)
Q Consensus       258 ~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~~---~---~~kT~~~~~~~nP~wne~f~f~~~~--~~  329 (1005)
                      .++..|+  ...+.|.|+|++|+||+.++.+|.+||||++++.+   .   ++||+++++++||+|||+|.|.+..  +.
T Consensus        33 ~~sl~y~--~~~~~L~V~Vi~a~~L~~~d~~g~sDPyVkv~l~~~~~~~~~~~kT~v~~~tlnP~wnE~F~f~v~~~~l~  110 (155)
T 2z0u_A           33 QIALKYD--EKNKQFAILIIQLSNLSALLQQQDQKVNIRVAVLPCSESTTCLFRTRPLDASDTLVFNEVFWVSMSYPALH  110 (155)
T ss_dssp             EEEEEEE--TTTTEEEEEEEEEECGGGTCCSCCSEEEEEEEEESCSCHHHHEEECCCEECCSSEEEEEEEEEECCHHHHH
T ss_pred             EEEEEEc--CCCCEEEEEEEEccCcCCcccCCCCCEEEEEEEecCCCCCccceeCCcCCCCCCCccccEEEEEcCHHHhC
Confidence            3445554  45589999999999999999999999999999976   2   6899999999999999999999753  33


Q ss_pred             CcEEEEEEEeCC-CCCCceeEEEEEEceecCCCCCCCCCCCCeEEEee
Q 045058          330 ASVLEVVIKDKD-LVKDDFVGIVRFDINEVPLRVPPDSPLAPEWYRLE  376 (1005)
Q Consensus       330 ~~~l~v~V~d~~-~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~  376 (1005)
                      ...|.|+|||++ ++++++||++.++|.++...    .....+||+|.
T Consensus       111 ~~~L~~~V~d~d~~~~~d~iG~~~i~l~~l~~~----~~~~~~W~~L~  154 (155)
T 2z0u_A          111 QKTLRVDVCTTDRSHLEECLGGAQISLAEVCRS----GERSTRWYNLL  154 (155)
T ss_dssp             HCEEEEEEEEECTTSCEEEEEEEEEECTTSCTT----CCCEEEEEEEB
T ss_pred             cCEEEEEEEECCCCCCCcEEEEEEEEHHHccCC----CCccccceEcc
Confidence            568999999999 78899999999999998532    23567899985

>2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A

Probab=99.65  E-value=1e-15  Score=151.32  Aligned_cols=93  Identities=26%  Similarity=0.431  Sum_probs=82.3

Q ss_pred             CcEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eEeeccccCCCCCCceeeEEEEEeccCccccceEEEEEEEeC
Q 045058            3 NLKLGVQVVGAHNLLPKDGKGSSSAFVELYFDG-----QRFRTTIKENDLNPVWNESFYFNISDASKLHYLTLEAYIYNN   77 (1005)
Q Consensus         3 ~~~l~V~v~~a~~L~~~d~~g~~dpyv~v~~~~-----~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~   77 (1005)
                      .+.|.|+|++|+||+.+|..|.+||||+|++.+     .+++|+++++++||+|||+|.|.+...+ +....|.|+|||+
T Consensus        36 ~~~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~-l~~~~L~i~V~d~  114 (166)
T 2cm5_A           36 QGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIKHSD-LAKKSLDISVWDY  114 (166)
T ss_dssp             TTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETC---CCEEECCCCCSCSSCEEEEEEEEECCGGG-GGGCEEEEEEEEC
T ss_pred             CCEEEEEEEEeECCCCccCCCCCCcEEEEEEECCCCccceEeCCcccCCCCCcccceEEEEcchHh-cCCCEEEEEEEEC
Confidence            578999999999999999999999999999975     5899999999999999999999986432 4457899999999


Q ss_pred             CCCCCCCcccEEEEEeCCcc
Q 045058           78 IGDTNSRSFLGKVCLTGNSF   97 (1005)
Q Consensus        78 ~~~~~~d~~lG~~~i~l~~l   97 (1005)
                      +. .++|++||++.|++.++
T Consensus       115 d~-~~~~~~iG~~~i~l~~~  133 (166)
T 2cm5_A          115 DI-GKSNDYIGGCQLGISAK  133 (166)
T ss_dssp             CS-SSCCEEEEEEEEETTCC
T ss_pred             CC-CCCCcEEEeEEEecccC
Confidence            54 45899999999999885

>1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2

Probab=99.65  E-value=1e-15  Score=146.03  Aligned_cols=102  Identities=15%  Similarity=0.115  Sum_probs=87.8

Q ss_pred             cceEEEEEEEEecCCCCCCCCCCCCCCCcEEEEEEC---C-EEEEeeeccCCCCceeccEEEEEEeCC---CceEEEEEE
Q 045058          594 SIGILELGILNAVGLHPMKTRDGRGTSDTYCVAKYG---H-KWVRTRTLVDNLSPKYNEQYTWEVFDP---ATVLTVGVF  666 (1005)
Q Consensus       594 ~~g~l~v~i~~a~~L~~~~~~~~~~~~dpyv~~~~g---~-~~~~T~~~~~t~nP~wne~f~~~v~~~---~~~l~i~v~  666 (1005)
                      ..+.|+|+|++|++      .|..|.+||||++.+.   + ..++|+++++|+||+|||.|.|.+...   ...|.|+||
T Consensus        24 ~~~~L~V~v~~a~~------~d~~g~sDPyv~v~l~~~~~~~~~kT~v~~~tlnP~wnE~f~f~v~~~~l~~~~L~~~V~   97 (138)
T 1wfm_A           24 QKAELFVTRLEAVT------SNHDGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPLAEEELPTATLTLTLR   97 (138)
T ss_dssp             TTTEEEEEEEEEEC------CCCSSCCCEEEEEEEEETTEEEEEECCCCCCCSSEECSSCEEEECCTTSSTTCEEEEEEE
T ss_pred             CCCEEEEEEEEEEc------CCCCCCcceEEEEEEEcCCCcccEecccCcCCCCCcCCceEEEEecHHHcCCCEEEEEEE
Confidence            45899999999993      2457899999999993   2 357999999999999999999998643   568999999


Q ss_pred             eCCCcCCCCCCCCCcccEEEEEEcccccCCCEEeeeEeeee
Q 045058          667 DNSQLGEKSNGNKDLKIGKVRIRISTLETGRIYTHSYPLLV  707 (1005)
Q Consensus       667 d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~  707 (1005)
                      |+|.++      +|++||.+.|+|.++..+.....||+|..
T Consensus        98 d~d~~~------~dd~lG~~~i~l~~l~~~~~~~~W~~L~~  132 (138)
T 1wfm_A           98 TCDRFS------RHSVAGELRLGLDGTSVPLGAAQWGELKT  132 (138)
T ss_dssp             ECCSSC------TTSCSEEEEEESSSSSSCTTCCEEEECCC
T ss_pred             ECCCCC------CCcEEEEEEEEcccccCcccccceeeCcC
Confidence            999876      89999999999999986666789999974

>2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.65  E-value=7.3e-16  Score=145.52  Aligned_cols=111  Identities=24%  Similarity=0.489  Sum_probs=90.6

Q ss_pred             cceeeeccccceeEEEEEEEEeecCCCCCCCCCCCcEEEEEE-----CCeeeeeeeecCCCCCeeeeEEEEeec---CCC
Q 045058          258 KTASTYDLVERMYFLYVRVVKARELPAMDLTGSIDPFVEVKI-----GNYKGITKHYEKNQNPQWHQVFAFSRD---RMQ  329 (1005)
Q Consensus       258 ~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~-----~~~~~kT~~~~~~~nP~wne~f~f~~~---~~~  329 (1005)
                      .++..|+.  ..+.|.|+|++|++|+..+.+|.+||||++++     +...++|++++++.||.|||+|.|.+.   ++.
T Consensus         8 ~~~l~y~~--~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~   85 (129)
T 2bwq_A            8 SIKLWFDK--VGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREFR   85 (129)
T ss_dssp             EEEEEEET--TTTEEEEEEEEEESCCCCTTSCCBCEEEEEEEESSCSGGGEEECCCCSSBSSCEEEEEEEECSCCGGGGG
T ss_pred             EEEEEEcc--CCCEEEEEEEEeeCCCCCCCCCCCCCEEEEEEecCCCCCcceecccccCCCCCccccEEEEccCCHHHhc
Confidence            34555543  45899999999999999999999999999999     346789999999999999999999852   334


Q ss_pred             CcEEEEEEEeCC-CCC--CceeEEEEEEceecCCCCCCCCCCCCeEEEee
Q 045058          330 ASVLEVVIKDKD-LVK--DDFVGIVRFDINEVPLRVPPDSPLAPEWYRLE  376 (1005)
Q Consensus       330 ~~~l~v~V~d~~-~~~--d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~  376 (1005)
                      ...|.|+|||++ .++  +++||++.++|.++...      ...+||+|.
T Consensus        86 ~~~l~~~V~d~d~~~~~~~~~lG~~~i~l~~l~~~------~~~~W~~Lq  129 (129)
T 2bwq_A           86 ERMLEITLWDQARVREEESEFLGEILIELETALLD------DEPHWYKLQ  129 (129)
T ss_dssp             GCEEEEEEEEC-------CEEEEEEEEEGGGCCCS------SCEEEEECC
T ss_pred             CCeEEEEEEECCcCcCcCCceeEEEEEEccccCCC------cCCccEECc
Confidence            579999999999 565  99999999999998753      268899984

>2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.64  E-value=7.4e-16  Score=149.05  Aligned_cols=109  Identities=18%  Similarity=0.191  Sum_probs=91.1

Q ss_pred             CcceEEEEEEEEecCCCCC-CCC---CCCCCCCcEEEEEEC---CEEEEeeeccCCCCceeccEEEEEEeCC---CceEE
Q 045058          593 PSIGILELGILNAVGLHPM-KTR---DGRGTSDTYCVAKYG---HKWVRTRTLVDNLSPKYNEQYTWEVFDP---ATVLT  662 (1005)
Q Consensus       593 ~~~g~l~v~i~~a~~L~~~-~~~---~~~~~~dpyv~~~~g---~~~~~T~~~~~t~nP~wne~f~~~v~~~---~~~l~  662 (1005)
                      +..|.|.|+|++|+||++. +..   +..+.+||||++.++   ...+||+++++++||+|||+|.|.+...   ...|.
T Consensus        23 ~~~~~L~V~v~~a~~L~~~~d~~g~~~~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~  102 (147)
T 2enp_A           23 LLHNHLTVRVIEARDLPPPISHDGSRQDMAHSNPYVKICLLPDQKNSKQTGVKRKTQKPVFEERYTFEIPFLEAQRRTLL  102 (147)
T ss_dssp             TTTTEEEEEEEEEECCCCSCSSCCSSCTTCCCCCEEEEEEETCCSSCEECCCCCSCSSCCCCBCCEECCCHHHHHHSEEE
T ss_pred             CCCCEEEEEEEEEeCCCCccccccccccCCCCCcEEEEEEEeCCCcceEeecccCCCCCeEeeeEEEEeChHHhccCEEE
Confidence            3458999999999999973 321   124689999999995   3568999999999999999999998642   46899


Q ss_pred             EEEEeCCCcCCCCCCCCCcccEEEEEEcccccCCCEEeeeEeeee
Q 045058          663 VGVFDNSQLGEKSNGNKDLKIGKVRIRISTLETGRIYTHSYPLLV  707 (1005)
Q Consensus       663 i~v~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~  707 (1005)
                      |+|||++.++      ++++||.+.|+|.++..+.....||+|..
T Consensus       103 ~~V~d~d~~~------~~~~iG~~~i~l~~l~~~~~~~~w~~L~~  141 (147)
T 2enp_A          103 LTVVDFDKFS------RHCVIGKVSVPLCEVDLVKGGHWWKALIP  141 (147)
T ss_dssp             EEEECCSTTC------CSCCCEEEEEETTTSCTTTCCCEEECCBC
T ss_pred             EEEEECCCCc------CCcEEEEEEEechhcCCCCCccEEEEeec
Confidence            9999999776      78999999999999987766678999973

>2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.64  E-value=5.9e-16  Score=149.74  Aligned_cols=109  Identities=20%  Similarity=0.232  Sum_probs=89.8

Q ss_pred             CcEEEEEEEEeecCCCC-CC------CCCCCcEEEEEEC---CeEeeccccCCCCCCceeeEEEEEeccCccccceEEEE
Q 045058            3 NLKLGVQVVGAHNLLPK-DG------KGSSSAFVELYFD---GQRFRTTIKENDLNPVWNESFYFNISDASKLHYLTLEA   72 (1005)
Q Consensus         3 ~~~l~V~v~~a~~L~~~-d~------~g~~dpyv~v~~~---~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v   72 (1005)
                      .+.|.|+|++|+||+.+ +.      .|.+||||+|++.   +++++|+++++++||+|||+|.|.+...+ +....|.|
T Consensus        25 ~~~L~V~v~~a~~L~~~~d~~g~~~~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~-l~~~~L~~  103 (147)
T 2enp_A           25 HNHLTVRVIEARDLPPPISHDGSRQDMAHSNPYVKICLLPDQKNSKQTGVKRKTQKPVFEERYTFEIPFLE-AQRRTLLL  103 (147)
T ss_dssp             TTEEEEEEEEEECCCCSCSSCCSSCTTCCCCCEEEEEEETCCSSCEECCCCCSCSSCCCCBCCEECCCHHH-HHHSEEEE
T ss_pred             CCEEEEEEEEEeCCCCccccccccccCCCCCcEEEEEEEeCCCcceEeecccCCCCCeEeeeEEEEeChHH-hccCEEEE
Confidence            47899999999999984 43      3589999999996   35789999999999999999999985432 33458999


Q ss_pred             EEEeCCCCCCCCcccEEEEEeCCcccCCCCceeeeEecccCC
Q 045058           73 YIYNNIGDTNSRSFLGKVCLTGNSFVPLSDSVVLHYPLEKRG  114 (1005)
Q Consensus        73 ~V~d~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~  114 (1005)
                      +|||++. .++|++||++.|+|.++...... ..|++|.+++
T Consensus       104 ~V~d~d~-~~~~~~iG~~~i~l~~l~~~~~~-~~w~~L~~~~  143 (147)
T 2enp_A          104 TVVDFDK-FSRHCVIGKVSVPLCEVDLVKGG-HWWKALIPSG  143 (147)
T ss_dssp             EEECCST-TCCSCCCEEEEEETTTSCTTTCC-CEEECCBCCC
T ss_pred             EEEECCC-CcCCcEEEEEEEechhcCCCCCc-cEEEEeecCC
Confidence            9999964 45899999999999998665443 4799999765

>1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A*

Probab=99.64  E-value=1.6e-15  Score=148.67  Aligned_cols=110  Identities=26%  Similarity=0.325  Sum_probs=91.2

Q ss_pred             CcEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eEeeccccCCCCCCceeeEEEEEeccCccccceEEEEEEEeC
Q 045058            3 NLKLGVQVVGAHNLLPKDGKGSSSAFVELYFDG-----QRFRTTIKENDLNPVWNESFYFNISDASKLHYLTLEAYIYNN   77 (1005)
Q Consensus         3 ~~~l~V~v~~a~~L~~~d~~g~~dpyv~v~~~~-----~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~   77 (1005)
                      .+.|.|+|++|+||+.+|..|.+||||+|++..     .+++|+++++++||+|||+|.|.+...+ +....|.|+|||+
T Consensus        24 ~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~-l~~~~l~i~V~d~  102 (159)
T 1tjx_A           24 AGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQ-IQKVQVVVTVLDY  102 (159)
T ss_dssp             TTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEEEECCGGG-GGGCEEEEEEEEC
T ss_pred             CCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCceeceeeCceecCCCCCcccceEEEEcCHHH-hCCcEEEEEEEEC
Confidence            578999999999999999999999999999852     4789999999999999999999986533 4456899999999


Q ss_pred             CCCCCCCcccEEEEEeCCcc----------c-CCCCceeeeEecccCC
Q 045058           78 IGDTNSRSFLGKVCLTGNSF----------V-PLSDSVVLHYPLEKRG  114 (1005)
Q Consensus        78 ~~~~~~d~~lG~~~i~l~~l----------~-~~~~~~~~w~~L~~~~  114 (1005)
                      +. .++|++||++.|++..+          . ..+.....||+|.+..
T Consensus       103 d~-~~~~~~iG~~~i~l~~~~~~~~~w~~l~~~~~~~~~~W~~L~~~~  149 (159)
T 1tjx_A          103 DK-IGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQWHTLQVEE  149 (159)
T ss_dssp             CS-SSCCEEEEEEEEETTCCHHHHHHHHHHHHSTTCCEEEEEECBCHH
T ss_pred             CC-CCCCceEEEEEECCCCCCcHHHHHHHHHHCCCCeeeeEEECcCcc
Confidence            64 56899999999999853          2 2234456899998653

>1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.64  E-value=6.7e-16  Score=149.66  Aligned_cols=102  Identities=25%  Similarity=0.373  Sum_probs=90.2

Q ss_pred             eEEEEEEEEecCCCCCCCCCCCCCCCcEEEEEEC-----CEEEEeeeccCCCCceeccEEEEEEeCC--CceEEEEEEeC
Q 045058          596 GILELGILNAVGLHPMKTRDGRGTSDTYCVAKYG-----HKWVRTRTLVDNLSPKYNEQYTWEVFDP--ATVLTVGVFDN  668 (1005)
Q Consensus       596 g~l~v~i~~a~~L~~~~~~~~~~~~dpyv~~~~g-----~~~~~T~~~~~t~nP~wne~f~~~v~~~--~~~l~i~v~d~  668 (1005)
                      |.|.|+|++|+||++++   ..+.+||||+++++     ...+||+++++++||+|||+|.|.+...  ...|.|+|||+
T Consensus        31 ~~L~v~v~~a~~L~~~d---~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~L~i~V~d~  107 (149)
T 1a25_A           31 EVLIVVVRDAKNLVPMD---PNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKESDKDRRLSVEIWDW  107 (149)
T ss_dssp             SEEEEEEEEEESCCCCS---TTSCCCEEEEEEEESCTTCSSCEECCCCSSCSSCEEEEEEEEECCSGGGGCEEEEEEEEC
T ss_pred             CEEEEEEEEeeCCCCCC---CCCCcCeEEEEEEECCCCCcceEecceeCCCCCCcCCcEEEEEeccccCCCEEEEEEEEC
Confidence            78999999999999764   47889999999996     3578999999999999999999999753  46899999999


Q ss_pred             CCcCCCCCCCCCcccEEEEEEcccccCCCEEeeeEeeee
Q 045058          669 SQLGEKSNGNKDLKIGKVRIRISTLETGRIYTHSYPLLV  707 (1005)
Q Consensus       669 ~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~  707 (1005)
                      +.++      +|++||.+.|+|.++..+. ...||+|..
T Consensus       108 d~~~------~~~~iG~~~i~l~~l~~~~-~~~W~~L~~  139 (149)
T 1a25_A          108 DLTS------RNDFMGSLSFGISELQKAG-VDGWFKLLS  139 (149)
T ss_dssp             CSSS------CCEEEEEEEEEHHHHTTCC-EEEEEECBC
T ss_pred             CCCC------CCCEEEEEEEEHHHhCcCc-cCCeEEccC
Confidence            9876      8999999999999998764 689999973

>2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus}

Probab=99.63  E-value=4e-16  Score=154.72  Aligned_cols=107  Identities=21%  Similarity=0.282  Sum_probs=92.3

Q ss_pred             ceEEEEEEEEecCCCCCCCCCCCCCCCcEEEEEECC-----EEEEeeeccCCCCceeccEEEEEEeCCCceEEEEEE-eC
Q 045058          595 IGILELGILNAVGLHPMKTRDGRGTSDTYCVAKYGH-----KWVRTRTLVDNLSPKYNEQYTWEVFDPATVLTVGVF-DN  668 (1005)
Q Consensus       595 ~g~l~v~i~~a~~L~~~~~~~~~~~~dpyv~~~~g~-----~~~~T~~~~~t~nP~wne~f~~~v~~~~~~l~i~v~-d~  668 (1005)
                      .|.|.|+|++|+||+++|.  ..|.+||||++.+++     ..+||+++++|+||+|||+|.|.+......|.|+|| |+
T Consensus        29 ~~~L~V~v~~a~~L~~~d~--~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~L~~~V~~d~  106 (171)
T 2q3x_A           29 KGQLEVEVIRARSLTQKPG--SKSTPAPYVKVYLLENGACIAKKKTRIARKTLDPLYQQSLVFDESPQGKVLQVIVWGDY  106 (171)
T ss_dssp             TTEEEEEEEEEESCCCCC-----CCCEEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEECSSCCTTEEEEEEEEEEC
T ss_pred             CCEEEEEEEEeeCCCCCCc--CCCCCCceEEEEEECCCccccceeCccCCCCCCCCCCcEEEEEecCCCCEEEEEEEEcC
Confidence            3899999999999997641  258899999999843     368999999999999999999998766789999999 99


Q ss_pred             CCcCCCCCCCCCcccEEEEEEcccccCCCEEeeeEeeeecC
Q 045058          669 SQLGEKSNGNKDLKIGKVRIRISTLETGRIYTHSYPLLVLH  709 (1005)
Q Consensus       669 ~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~  709 (1005)
                      |.++      +|++||.+.|+|+++..+.....||+|....
T Consensus       107 d~~~------~d~~iG~~~i~l~~l~~~~~~~~W~~L~~~~  141 (171)
T 2q3x_A          107 GRMD------HKCFMGVAQILLEELDLSSMVIGWYKLFPPS  141 (171)
T ss_dssp             STTC------SSEEEEEEEECGGGSCTTSCEEEEEECBCGG
T ss_pred             CCCC------CCCEEEEEEEEHHHcccCCCcceeEECCCcc
Confidence            9776      8999999999999999888889999997443

>3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.7.1.2 PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A*

Probab=99.63  E-value=8.3e-16  Score=147.96  Aligned_cols=113  Identities=30%  Similarity=0.481  Sum_probs=95.8

Q ss_pred             cceeeeccccceeEEEEEEEEeecCCCCCCCCCCCcEEEEEEC---CeeeeeeeecCCCCCeeeeEEEEeec--CCCCcE
Q 045058          258 KTASTYDLVERMYFLYVRVVKARELPAMDLTGSIDPFVEVKIG---NYKGITKHYEKNQNPQWHQVFAFSRD--RMQASV  332 (1005)
Q Consensus       258 ~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~---~~~~kT~~~~~~~nP~wne~f~f~~~--~~~~~~  332 (1005)
                      .++..|+  ...+.|.|+|++|++|+..+.++.+||||++++.   ...++|++++++.||.|||+|.|.+.  ++....
T Consensus        24 ~~~l~y~--~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~  101 (143)
T 3f04_A           24 QYSLDYD--FQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGKT  101 (143)
T ss_dssp             EEEEEEE--TTTTEEEEEEEEEECCCCBGGGBCCCEEEEEEEESCCSCCEECCCCCSCSSCEEEEEEEECCCHHHHTTCE
T ss_pred             EEEEEEe--CCCCEEEEEEEEecCCCCCCCCCCcCcEEEEEEECCCCccEECccCcCCCCCcCcCeEEEeecHhhcCCCE
Confidence            3444444  4558999999999999999988999999999994   45789999999999999999999876  344578


Q ss_pred             EEEEEEeCC-CCCCceeEEEEEEceecCCCCCCCCCCCCeEEEeec
Q 045058          333 LEVVIKDKD-LVKDDFVGIVRFDINEVPLRVPPDSPLAPEWYRLED  377 (1005)
Q Consensus       333 l~v~V~d~~-~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~  377 (1005)
                      |.|+|||++ ++++++||++.++|.++..+     .....|++|..
T Consensus       102 L~i~V~d~d~~~~~~~iG~~~i~l~~l~~~-----~~~~~W~~L~~  142 (143)
T 3f04_A          102 LVMAVYDFDRFSKHDIIGEFKVPMNTVDFG-----HVTEEWRDLQS  142 (143)
T ss_dssp             EEEEEEECCSSSCCEEEEEEEEEGGGCCTT-----SCEEEEEECBC
T ss_pred             EEEEEEeCCCCCCCceEEEEEEEHHHccCC-----CCcceEEECcC
Confidence            999999999 67899999999999999764     34678999975

>3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus}

Probab=99.63  E-value=1.8e-15  Score=144.69  Aligned_cols=93  Identities=27%  Similarity=0.402  Sum_probs=81.6

Q ss_pred             CcEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eEeeccccCCCCCCceeeEEEEEeccCccccceEEEEEEEeC
Q 045058            3 NLKLGVQVVGAHNLLPKDGKGSSSAFVELYFDG-----QRFRTTIKENDLNPVWNESFYFNISDASKLHYLTLEAYIYNN   77 (1005)
Q Consensus         3 ~~~l~V~v~~a~~L~~~d~~g~~dpyv~v~~~~-----~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~   77 (1005)
                      .+.|.|+|++|+||+.++..|.+||||+|++.+     .+++|+++++++||+|||+|.|.+...+ +....|.|+|||+
T Consensus        15 ~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~-l~~~~l~~~V~d~   93 (138)
T 3n5a_A           15 ANSIIVNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTKKRNLNPIFNESFAFDIPTEK-LRETTIIITVMDK   93 (138)
T ss_dssp             TTEEEEEEEEEESCCCCBTTTBCCEEEEEEEEETTEEEEEEECCCCSSCSSCEEEEEEEEECCGGG-GGGEEEEEEEEEC
T ss_pred             CCeEEEEEEEeeCCCCcCCCCCcCeEEEEEEEeCCCccceEeCccccCCCCCcCcceEEEECChhh-cCceEEEEEEEEC
Confidence            478999999999999999999999999999964     4789999999999999999999986543 4457899999999


Q ss_pred             CCCCCCCcccEEEEEeCCcc
Q 045058           78 IGDTNSRSFLGKVCLTGNSF   97 (1005)
Q Consensus        78 ~~~~~~d~~lG~~~i~l~~l   97 (1005)
                      +. .++|++||++.|++.++
T Consensus        94 ~~-~~~~~~lG~~~i~l~~~  112 (138)
T 3n5a_A           94 DK-LSRNDVIGKIYLSWKSG  112 (138)
T ss_dssp             CS-SSCCEEEEEEEESSSSC
T ss_pred             CC-CCCCcEEEEEEEccccC
Confidence            64 45899999999999874

>2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus}

Probab=99.63  E-value=7.3e-16  Score=152.85  Aligned_cols=106  Identities=23%  Similarity=0.353  Sum_probs=89.5

Q ss_pred             CcEEEEEEEEeecCCCCCC-CCCCCcEEEEEECC-----eEeeccccCCCCCCceeeEEEEEeccCccccceEEEEEEE-
Q 045058            3 NLKLGVQVVGAHNLLPKDG-KGSSSAFVELYFDG-----QRFRTTIKENDLNPVWNESFYFNISDASKLHYLTLEAYIY-   75 (1005)
Q Consensus         3 ~~~l~V~v~~a~~L~~~d~-~g~~dpyv~v~~~~-----~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~-   75 (1005)
                      .+.|.|+|++|+||+.+|. .|.+||||+|++..     .++||+++++++||+|||+|.|.+...    ...|.|+|| 
T Consensus        29 ~~~L~V~v~~a~~L~~~d~~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~----~~~L~~~V~~  104 (171)
T 2q3x_A           29 KGQLEVEVIRARSLTQKPGSKSTPAPYVKVYLLENGACIAKKKTRIARKTLDPLYQQSLVFDESPQ----GKVLQVIVWG  104 (171)
T ss_dssp             TTEEEEEEEEEESCCCCC---CCCEEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEECSSCCT----TEEEEEEEEE
T ss_pred             CCEEEEEEEEeeCCCCCCcCCCCCCceEEEEEECCCccccceeCccCCCCCCCCCCcEEEEEecCC----CCEEEEEEEE
Confidence            4789999999999999995 78999999999853     378999999999999999999998543    368999999 


Q ss_pred             eCCCCCCCCcccEEEEEeCCcccCCCCceeeeEecccCC
Q 045058           76 NNIGDTNSRSFLGKVCLTGNSFVPLSDSVVLHYPLEKRG  114 (1005)
Q Consensus        76 d~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~  114 (1005)
                      |++. .++|++||++.|+|.++.... ....||+|.+..
T Consensus       105 d~d~-~~~d~~iG~~~i~l~~l~~~~-~~~~W~~L~~~~  141 (171)
T 2q3x_A          105 DYGR-MDHKCFMGVAQILLEELDLSS-MVIGWYKLFPPS  141 (171)
T ss_dssp             ECST-TCSSEEEEEEEECGGGSCTTS-CEEEEEECBCGG
T ss_pred             cCCC-CCCCCEEEEEEEEHHHcccCC-CcceeEECCCcc
Confidence            8854 568999999999999987544 346899998775

>2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1

Probab=99.63  E-value=7e-16  Score=145.06  Aligned_cols=90  Identities=20%  Similarity=0.201  Sum_probs=74.5

Q ss_pred             CCCcEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEeecccc-CCCCCCceeeEEEEEeccCccccceEEEEEEEeCCC
Q 045058            1 MRNLKLGVQVVGAHNLLPKDGKGSSSAFVELYFDGQRFRTTIK-ENDLNPVWNESFYFNISDASKLHYLTLEAYIYNNIG   79 (1005)
Q Consensus         1 m~~~~l~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~T~v~-~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~   79 (1005)
                      |+.+.|.|+|++|++|..   .|.+||||+|+  ++..+|+++ .+++||+|||+|.|.+...+    ..|.|+|||++ 
T Consensus         2 ~~~~~L~V~V~~A~~l~~---~g~~DPYv~v~--~~~~kt~~~~~~t~nP~WnE~f~f~v~~~~----~~L~~~V~D~d-   71 (131)
T 2cjt_A            2 GVMSLLCVGVKKAKFDGA---QEKFNTYVTLK--VQNVKSTTIAVRGSQPSWEQDFMFEINRLD----LGLTVEVWNKG-   71 (131)
T ss_dssp             CCCEEEEEEEEEEECSSC---GGGCEEEEEEE--ETTEEEECCCEESSSCEEEEEEEEEECCCS----SEEEEEEEECC-
T ss_pred             CcceEEEEEEEEeECCCC---CCCcCeEEEEE--ecCEEEeEecCCCCCceECCEEEEEEeCCC----CeEEEEEEECC-
Confidence            788999999999998842   67899999999  334455544 47999999999999997543    47999999996 


Q ss_pred             CCCCCcccEEEEEeCCcccCCC
Q 045058           80 DTNSRSFLGKVCLTGNSFVPLS  101 (1005)
Q Consensus        80 ~~~~d~~lG~~~i~l~~l~~~~  101 (1005)
                       .++|++||++.|+|.++...+
T Consensus        72 -~~~dd~iG~~~i~l~~l~~~~   92 (131)
T 2cjt_A           72 -LIWDTMVGTVWIPLRTIRQSN   92 (131)
T ss_dssp             -SSCEEEEEEEEEEGGGSCBCS
T ss_pred             -CCCCCeEEEEEEEHHHhhhcC
Confidence             568999999999999986544

>1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A*

Probab=99.63  E-value=2.7e-15  Score=147.16  Aligned_cols=105  Identities=30%  Similarity=0.377  Sum_probs=88.8

Q ss_pred             CcceEEEEEEEEecCCCCCCCCCCCCCCCcEEEEEEC--C---EEEEeeeccCCCCceeccEEEEEEeCC---CceEEEE
Q 045058          593 PSIGILELGILNAVGLHPMKTRDGRGTSDTYCVAKYG--H---KWVRTRTLVDNLSPKYNEQYTWEVFDP---ATVLTVG  664 (1005)
Q Consensus       593 ~~~g~l~v~i~~a~~L~~~~~~~~~~~~dpyv~~~~g--~---~~~~T~~~~~t~nP~wne~f~~~v~~~---~~~l~i~  664 (1005)
                      +..|.|.|+|++|+||++++   ..|.+||||++.++  +   ..+||+++++++||+|||.|.|.+...   ...|.|+
T Consensus        22 ~~~~~L~V~v~~a~~L~~~d---~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~   98 (159)
T 1tjx_A           22 PTAGKLTVVILEAKNLKKMD---VGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVT   98 (159)
T ss_dssp             TTTTEEEEEEEEEESCCCCS---TTSCCCEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEE
T ss_pred             CCCCEEEEEEEEeeCCCCcc---CCCCCCeEEEEEEEeCCceeceeeCceecCCCCCcccceEEEEcCHHHhCCcEEEEE
Confidence            34589999999999999754   57889999999994  2   367999999999999999999998653   4689999


Q ss_pred             EEeCCCcCCCCCCCCCcccEEEEEEcccc------------cCCCEEeeeEeee
Q 045058          665 VFDNSQLGEKSNGNKDLKIGKVRIRISTL------------ETGRIYTHSYPLL  706 (1005)
Q Consensus       665 v~d~~~~~~~~~~~~d~~lG~~~i~l~~l------------~~~~~~~~~~~L~  706 (1005)
                      |||++.++      +|++||.+.|+|..+            ..++....||+|.
T Consensus        99 V~d~d~~~------~~~~iG~~~i~l~~~~~~~~~w~~l~~~~~~~~~~W~~L~  146 (159)
T 1tjx_A           99 VLDYDKIG------KNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQWHTLQ  146 (159)
T ss_dssp             EEECCSSS------CCEEEEEEEEETTCCHHHHHHHHHHHHSTTCCEEEEEECB
T ss_pred             EEECCCCC------CCceEEEEEECCCCCCcHHHHHHHHHHCCCCeeeeEEECc
Confidence            99999876      899999999999854            2345678899986

>3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus}

Probab=99.62  E-value=2.2e-15  Score=144.07  Aligned_cols=103  Identities=25%  Similarity=0.350  Sum_probs=85.3

Q ss_pred             CcceEEEEEEEEecCCCCCCCCCCCCCCCcEEEEEECC-----EEEEeeeccCCCCceeccEEEEEEeCCC---ceEEEE
Q 045058          593 PSIGILELGILNAVGLHPMKTRDGRGTSDTYCVAKYGH-----KWVRTRTLVDNLSPKYNEQYTWEVFDPA---TVLTVG  664 (1005)
Q Consensus       593 ~~~g~l~v~i~~a~~L~~~~~~~~~~~~dpyv~~~~g~-----~~~~T~~~~~t~nP~wne~f~~~v~~~~---~~l~i~  664 (1005)
                      +..|.|.|+|++|+||+.++   ..|.+||||++.+++     ...+|+++++++||+|||.|.|.+....   ..|.|+
T Consensus        13 ~~~~~L~v~v~~a~~L~~~d---~~g~~dpyv~v~~~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~l~~~~l~~~   89 (138)
T 3n5a_A           13 PSANSIIVNIIKARNLKAMD---IGGTSDPYVKVWLMYKDKRVEKKKTVTKKRNLNPIFNESFAFDIPTEKLRETTIIIT   89 (138)
T ss_dssp             TTTTEEEEEEEEEESCCCCB---TTTBCCEEEEEEEEETTEEEEEEECCCCSSCSSCEEEEEEEEECCGGGGGGEEEEEE
T ss_pred             CCCCeEEEEEEEeeCCCCcC---CCCCcCeEEEEEEEeCCCccceEeCccccCCCCCcCcceEEEECChhhcCceEEEEE
Confidence            34589999999999999764   477899999999953     4679999999999999999999987543   689999


Q ss_pred             EEeCCCcCCCCCCCCCcccEEEEEEcccccCCCEEeeeEeee
Q 045058          665 VFDNSQLGEKSNGNKDLKIGKVRIRISTLETGRIYTHSYPLL  706 (1005)
Q Consensus       665 v~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~  706 (1005)
                      |||++.++      +|++||.+.|+|+++..+.  .+|++|.
T Consensus        90 V~d~~~~~------~~~~lG~~~i~l~~~~~~~--~~W~~l~  123 (138)
T 3n5a_A           90 VMDKDKLS------RNDVIGKIYLSWKSGPGEV--KHWKDMI  123 (138)
T ss_dssp             EEECCSSS------CCEEEEEEEESSSSCHHHH--HHHHHHH
T ss_pred             EEECCCCC------CCcEEEEEEEccccCChHH--HHHHHHH
Confidence            99999876      8999999999999765332  3455554

>1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2

Probab=99.62  E-value=6.7e-16  Score=148.32  Aligned_cols=116  Identities=23%  Similarity=0.476  Sum_probs=96.6

Q ss_pred             cceeeeccccceeEEEEEEEEeecCCCCCCCCCCCcEEEEEEC-----CeeeeeeeecCCCCCeeeeEEEEee-c--CCC
Q 045058          258 KTASTYDLVERMYFLYVRVVKARELPAMDLTGSIDPFVEVKIG-----NYKGITKHYEKNQNPQWHQVFAFSR-D--RMQ  329 (1005)
Q Consensus       258 ~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~-----~~~~kT~~~~~~~nP~wne~f~f~~-~--~~~  329 (1005)
                      .++..|+  ...+.|.|+|++|++|+.++.++.+||||++++.     ...++|++++++.||+|||+|.|.+ .  ++.
T Consensus        11 ~~~l~y~--~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~   88 (141)
T 1v27_A           11 SIKLWFD--KVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREFR   88 (141)
T ss_dssp             EEEEEEE--TTTTEEEEEEEEEESCCCCSSSCCCCEEEECCCSSCCSSSSCCBCCCCSSCSSCCCCCCCEECSCCTTGGG
T ss_pred             EEEEEEe--CCCCEEEEEEEEccCCCCcCCCCCCCCEEEEEEecCCCCCcceeCccccCCCCCccccEEEEccCCHHHhc
Confidence            3444554  3458999999999999999999999999999993     4678999999999999999999984 2  334


Q ss_pred             CcEEEEEEEeCC-CCC--CceeEEEEEEceecCCCCCCCCCCCCeEEEeecCCCC
Q 045058          330 ASVLEVVIKDKD-LVK--DDFVGIVRFDINEVPLRVPPDSPLAPEWYRLEDKKGE  381 (1005)
Q Consensus       330 ~~~l~v~V~d~~-~~~--d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~  381 (1005)
                      ...|.|+|||++ .++  +++||++.++|.++...      ...+||+|......
T Consensus        89 ~~~l~i~V~d~d~~~~~~~~~lG~~~i~l~~l~~~------~~~~W~~L~~~~~g  137 (141)
T 1v27_A           89 ERMLEITLWDQARVREEESEFLGEILIELETALLD------DEPHWYKLQTHDSG  137 (141)
T ss_dssp             TCEEEEEEEEBCSSSSCCBCCCEEEEEEGGGCCCS------SEEEEEECBCCSSC
T ss_pred             CCEEEEEEEECCCCcCCCCceEEEEEEEccccCCC------CCCceEECcccccC
Confidence            578999999999 555  99999999999998653      26799999987654

>1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A

Probab=99.62  E-value=3.5e-15  Score=145.33  Aligned_cols=106  Identities=22%  Similarity=0.281  Sum_probs=81.8

Q ss_pred             CcEEEEEEEEeecCCCCCCCCCCCcEEEEEE--CCe---EeeccccCCCCCCceeeEEEEEeccCccccceEEEEEEEeC
Q 045058            3 NLKLGVQVVGAHNLLPKDGKGSSSAFVELYF--DGQ---RFRTTIKENDLNPVWNESFYFNISDASKLHYLTLEAYIYNN   77 (1005)
Q Consensus         3 ~~~l~V~v~~a~~L~~~d~~g~~dpyv~v~~--~~~---~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~   77 (1005)
                      .+.|.|+|++|+||+.++..|.+||||+|++  ++.   +++|+++++++||+|||+|.|.+...+ +....|.|+|||+
T Consensus        29 ~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~-l~~~~l~v~V~d~  107 (153)
T 1w15_A           29 TNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFDIPCES-LEEISVEFLVLDS  107 (153)
T ss_dssp             TTEEEEEEEEEESCC------CCCEEEEEEEEETTEEEEEEECCCCCSCSSEEEEEEEEEECCSSS-STTEEEEEEEEEC
T ss_pred             CCEEEEEEEEeECCCCcCCCCCCCeEEEEEEEeCCeEeceEecCcccCCCCCeecceEEEECCHHH-hCceEEEEEEEeC
Confidence            4789999999999999998999999999999  443   679999999999999999999986543 4457899999999


Q ss_pred             CCCCCCCcccEEEEEeCCcccCCCCceeeeEecccC
Q 045058           78 IGDTNSRSFLGKVCLTGNSFVPLSDSVVLHYPLEKR  113 (1005)
Q Consensus        78 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~  113 (1005)
                      +. .++|++||++.|++.+.   +.....|++|...
T Consensus       108 d~-~~~~~~lG~~~i~l~~~---~~~~~~W~~l~~~  139 (153)
T 1w15_A          108 ER-GSRNEVIGRLVLGATAE---GSGGGHWKEICDF  139 (153)
T ss_dssp             CT-TSCCEEEEEEEESTTCC---SHHHHHHHHHHHS
T ss_pred             CC-CCCCcEEEEEEECCCCC---chHHHHHHHHHhC
Confidence            64 56899999999999872   2223357666543

>1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.62  E-value=4.8e-16  Score=149.50  Aligned_cols=114  Identities=31%  Similarity=0.517  Sum_probs=96.1

Q ss_pred             cceeeeccccceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECCe--------------eeeeeeecCCCCCeeeeEEEE
Q 045058          258 KTASTYDLVERMYFLYVRVVKARELPAMDLTGSIDPFVEVKIGNY--------------KGITKHYEKNQNPQWHQVFAF  323 (1005)
Q Consensus       258 ~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~~~--------------~~kT~~~~~~~nP~wne~f~f  323 (1005)
                      .++..|+    .+.|.|+|++|++|+.++.+|.+||||++++.+.              .++|+++++++||.|||+|.|
T Consensus        10 ~~~l~y~----~~~L~V~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f   85 (142)
T 1rh8_A           10 QLQINYD----LGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEWNQTVIY   85 (142)
T ss_dssp             EEEEEEE----TTEEEEEEEEEESCCCCSSSSCSCCEEEEEETTSSCCCEECCCCCHHHHTTTTTTHHHHSCEEEEEEEE
T ss_pred             EEEEEEc----CCEEEEEEEEecCCCCCCCCCCCCceEEEEEecCCCcccccccccccceeeccccCCCCCCCCCCEEEE
Confidence            4455554    4789999999999999999999999999999873              468999999999999999999


Q ss_pred             e-ec--CCCCcEEEEEEEeCC-CCCCceeEEEEEEceecCCCCCCCCCCCCeEEEeecCCC
Q 045058          324 S-RD--RMQASVLEVVIKDKD-LVKDDFVGIVRFDINEVPLRVPPDSPLAPEWYRLEDKKG  380 (1005)
Q Consensus       324 ~-~~--~~~~~~l~v~V~d~~-~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~  380 (1005)
                      . +.  ++....|.|+|||++ .+++++||++.++|.++...     ....+|++|....+
T Consensus        86 ~~v~~~~l~~~~l~i~V~d~d~~~~~~~lG~~~i~l~~l~~~-----~~~~~W~~L~~~~~  141 (142)
T 1rh8_A           86 KSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSSTSHL-----DNTPRWYPLKEQTE  141 (142)
T ss_dssp             CSCCHHHHTTCEEEEEEEEECSSSCEEEEEEEEEETTSCGGG-----TTCCEEEECBCCCC
T ss_pred             CCcCHHHccCCEEEEEEEECCCCCCCceEEEEEEeccccccC-----CCCCeEEECCccCC
Confidence            7 43  334578999999999 67899999999999998654     34679999987653

>2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A

Probab=99.62  E-value=4.1e-15  Score=146.96  Aligned_cols=93  Identities=24%  Similarity=0.343  Sum_probs=81.8

Q ss_pred             CcceEEEEEEEEecCCCCCCCCCCCCCCCcEEEEEECC-----EEEEeeeccCCCCceeccEEEEEEeCC---CceEEEE
Q 045058          593 PSIGILELGILNAVGLHPMKTRDGRGTSDTYCVAKYGH-----KWVRTRTLVDNLSPKYNEQYTWEVFDP---ATVLTVG  664 (1005)
Q Consensus       593 ~~~g~l~v~i~~a~~L~~~~~~~~~~~~dpyv~~~~g~-----~~~~T~~~~~t~nP~wne~f~~~v~~~---~~~l~i~  664 (1005)
                      +..|.|.|+|++|+||++++   ..|.+||||++++++     ..+||+++++++||+|||.|.|.+...   ...|.|+
T Consensus        34 ~~~~~L~V~v~~a~~L~~~d---~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~  110 (166)
T 2cm5_A           34 TQQGGLIVGIIRCVHLAAMD---ANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIKHSDLAKKSLDIS  110 (166)
T ss_dssp             TTTTEEEEEEEEEESCCCCS---TTSCCCEEEEEEEETC---CCEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEE
T ss_pred             CCCCEEEEEEEEeECCCCcc---CCCCCCcEEEEEEECCCCccceEeCCcccCCCCCcccceEEEEcchHhcCCCEEEEE
Confidence            34589999999999999754   478899999999965     578999999999999999999999752   4699999


Q ss_pred             EEeCCCcCCCCCCCCCcccEEEEEEccccc
Q 045058          665 VFDNSQLGEKSNGNKDLKIGKVRIRISTLE  694 (1005)
Q Consensus       665 v~d~~~~~~~~~~~~d~~lG~~~i~l~~l~  694 (1005)
                      |||++.++      +|++||.+.|+|+++.
T Consensus       111 V~d~d~~~------~~~~iG~~~i~l~~~~  134 (166)
T 2cm5_A          111 VWDYDIGK------SNDYIGGCQLGISAKG  134 (166)
T ss_dssp             EEECCSSS------CCEEEEEEEEETTCCH
T ss_pred             EEECCCCC------CCcEEEeEEEecccCC
Confidence            99999876      8999999999999864

>2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1

Probab=99.61  E-value=1.8e-15  Score=142.30  Aligned_cols=87  Identities=23%  Similarity=0.330  Sum_probs=74.7

Q ss_pred             ceEEEEEEEEecCCCCCCCCCCCCCCCcEEEEEECCEEEEeeecc-CCCCceeccEEEEEEeCCCceEEEEEEeCCCcCC
Q 045058          595 IGILELGILNAVGLHPMKTRDGRGTSDTYCVAKYGHKWVRTRTLV-DNLSPKYNEQYTWEVFDPATVLTVGVFDNSQLGE  673 (1005)
Q Consensus       595 ~g~l~v~i~~a~~L~~~~~~~~~~~~dpyv~~~~g~~~~~T~~~~-~t~nP~wne~f~~~v~~~~~~l~i~v~d~~~~~~  673 (1005)
                      .|.|.|+|++|++|..      .|.+||||+++ + +..+|++++ +++||+|||.|.|.+.++...|.|+|||+| ++ 
T Consensus         4 ~~~L~V~V~~A~~l~~------~g~~DPYv~v~-~-~~~kt~~~~~~t~nP~WnE~f~f~v~~~~~~L~~~V~D~d-~~-   73 (131)
T 2cjt_A            4 MSLLCVGVKKAKFDGA------QEKFNTYVTLK-V-QNVKSTTIAVRGSQPSWEQDFMFEINRLDLGLTVEVWNKG-LI-   73 (131)
T ss_dssp             CEEEEEEEEEEECSSC------GGGCEEEEEEE-E-TTEEEECCCEESSSCEEEEEEEEEECCCSSEEEEEEEECC-SS-
T ss_pred             ceEEEEEEEEeECCCC------CCCcCeEEEEE-e-cCEEEeEecCCCCCceECCEEEEEEeCCCCeEEEEEEECC-CC-
Confidence            4899999999998852      57889999999 3 335676665 799999999999999987788999999999 66 


Q ss_pred             CCCCCCCcccEEEEEEcccccCC
Q 045058          674 KSNGNKDLKIGKVRIRISTLETG  696 (1005)
Q Consensus       674 ~~~~~~d~~lG~~~i~l~~l~~~  696 (1005)
                           +|++||.+.|+|+++...
T Consensus        74 -----~dd~iG~~~i~l~~l~~~   91 (131)
T 2cjt_A           74 -----WDTMVGTVWIPLRTIRQS   91 (131)
T ss_dssp             -----CEEEEEEEEEEGGGSCBC
T ss_pred             -----CCCeEEEEEEEHHHhhhc
Confidence                 799999999999998643

>1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2

Probab=99.60  E-value=4.4e-15  Score=141.86  Aligned_cols=116  Identities=23%  Similarity=0.300  Sum_probs=94.6

Q ss_pred             ceeeeccccceeEEEEEEEEeecCCCCCCC-CCCCcEEEEEECC---eeeeeeeecCCCCCeeeeEEEEe-ec--CCCCc
Q 045058          259 TASTYDLVERMYFLYVRVVKARELPAMDLT-GSIDPFVEVKIGN---YKGITKHYEKNQNPQWHQVFAFS-RD--RMQAS  331 (1005)
Q Consensus       259 ~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~-g~~dPyv~v~~~~---~~~kT~~~~~~~nP~wne~f~f~-~~--~~~~~  331 (1005)
                      ++..|+  ...+.|.|+|++|++|+.++.. +.+||||++++.+   +.++|+++++++||+|||+|.|. +.  ++...
T Consensus        13 ~~l~y~--~~~~~L~v~v~~a~~L~~~d~~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~v~~~~~~~~   90 (138)
T 1ugk_A           13 FSLEYN--FERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFYGIPYTQIQEL   90 (138)
T ss_dssp             EEEEEE--GGGTEEEEEEEEEESCCCCBTTTTBCEEEEEEEEETTTCSEEECCCCSSCSSCEEEEEEEEECCCSTTGGGC
T ss_pred             EEEEEE--CCCCEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEecCCCceEecCcCcCCCCCcEeeEEEEcCcCHHHhccC
Confidence            344443  4568999999999999999985 8999999999964   67899999999999999999995 43  33456


Q ss_pred             EEEEEEEeCC-CCCCceeEEEEEEceecCCCCCCCCCCCCeEEEeecCCC
Q 045058          332 VLEVVIKDKD-LVKDDFVGIVRFDINEVPLRVPPDSPLAPEWYRLEDKKG  380 (1005)
Q Consensus       332 ~l~v~V~d~~-~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~  380 (1005)
                      .|.|+|||++ ++++++||++.++|.++....    .....|++|...+.
T Consensus        91 ~l~i~V~d~d~~~~~~~lG~~~i~l~~l~~~~----~~~~~~~~l~~~~~  136 (138)
T 1ugk_A           91 ALHFTILSFDRFSRDDIIGEVLIPLSGIELSE----GKMLMNREIISGPS  136 (138)
T ss_dssp             EEEEEEEEECSSCCCCCCEEEEEECTTCCCTT----CCEEEEEECBSSSS
T ss_pred             EEEEEEEECCCCCCCcEEEEEEEehhHccCCC----CcchhhhhhhcCCC
Confidence            8999999999 778999999999999997642    23356788877543

>2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A

Probab=99.59  E-value=3.5e-15  Score=143.34  Aligned_cols=114  Identities=25%  Similarity=0.413  Sum_probs=94.7

Q ss_pred             cceeeeccccceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeeeeeecCCCCCeeeeEEEEe-ec--CCC
Q 045058          258 KTASTYDLVERMYFLYVRVVKARELPAMDLTGSIDPFVEVKIGN-----YKGITKHYEKNQNPQWHQVFAFS-RD--RMQ  329 (1005)
Q Consensus       258 ~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~~-----~~~kT~~~~~~~nP~wne~f~f~-~~--~~~  329 (1005)
                      .++..|+  ...+.|.|+|++|++|+..+.+|.+||||++++.+     ..++|++++++.||.|||+|.|. +.  ++.
T Consensus        19 ~~~l~y~--~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~   96 (142)
T 2chd_A           19 EFSLLYD--QDNSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQYHGITEEDMQ   96 (142)
T ss_dssp             EEEEEEE--GGGTEEEEEEEEEESCCCCCTTSCCCEEEEEEEESCCSGGGEEECCCCCSCSSCEEEEEEEEESCCHHHHH
T ss_pred             EEEEEEe--CCCCEEEEEEEEecCCCCCCCCCCCCCEEEEEEEcCCCCcceeeCCcCCCCCCCcCcCEEEEcccCHHHcc
Confidence            3444454  45689999999999999999999999999999976     67899999999999999999998 43  222


Q ss_pred             CcEEEEEEEeCC-CCCCceeEEEEEEceecCCCCCCCCCCCCeEEEeecC
Q 045058          330 ASVLEVVIKDKD-LVKDDFVGIVRFDINEVPLRVPPDSPLAPEWYRLEDK  378 (1005)
Q Consensus       330 ~~~l~v~V~d~~-~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~  378 (1005)
                      ...|.|+|||++ .+++++||++.++|.++..+     .....|+.|..+
T Consensus        97 ~~~l~i~V~d~d~~~~d~~iG~~~i~l~~l~~~-----~~~~~~~~L~~p  141 (142)
T 2chd_A           97 RKTLRISVCDEDKFGHNEFIGETRFSLKKLKAN-----QRKNFNICLERV  141 (142)
T ss_dssp             HCEEEEEEEEECTTSCEEEEEEEEEEGGGCCTT-----CCEEEEEECBCC
T ss_pred             CCEEEEEEEECCCCCCCcEEEEEEEEHHHcCCC-----CccEEEEecccC
Confidence            368999999999 67899999999999999764     345667777653

>2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.59  E-value=2.4e-15  Score=144.56  Aligned_cols=114  Identities=25%  Similarity=0.362  Sum_probs=93.8

Q ss_pred             ceeeeccccceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeeeeeecCCCCCeeeeEEEEeecC--CCCc
Q 045058          259 TASTYDLVERMYFLYVRVVKARELPAMDLTGSIDPFVEVKIGN-----YKGITKHYEKNQNPQWHQVFAFSRDR--MQAS  331 (1005)
Q Consensus       259 ~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~~-----~~~kT~~~~~~~nP~wne~f~f~~~~--~~~~  331 (1005)
                      ++..|+  ...+.|.|+|++|++|+.++.+| +||||++++.+     ..++|+++++++||+|||+|.|.+..  +...
T Consensus        15 ~~l~y~--~~~~~L~v~v~~a~~L~~~d~~g-~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~   91 (142)
T 2dmg_A           15 LTIRHS--SQRNKLIVVVHACRNLIAFSEDG-SDPYVRMYLLPDKRRSGRRKTHVSKKTLNPVFDQSFDFSVSLPEVQRR   91 (142)
T ss_dssp             EEEEEE--TTTTEEEEEEEEEECCCCSSTTC-CCEEEEEEEESCCCSSSCEECCCCCSCSSCEEEEEEEECCCHHHHHHC
T ss_pred             EEEEEe--CCCCEEEEEEEEeECCCCCCCCC-CCeeEEEEEEcCCCCCCcccCCccCCCCCCCcCceEEEEecHHHhCcC
Confidence            444443  44589999999999999999888 99999999953     56799999999999999999998743  2345


Q ss_pred             EEEEEEEeCC-CCC--CceeEEEEEEceecCCCCCCCCCCCCeEEEeecCCC
Q 045058          332 VLEVVIKDKD-LVK--DDFVGIVRFDINEVPLRVPPDSPLAPEWYRLEDKKG  380 (1005)
Q Consensus       332 ~l~v~V~d~~-~~~--d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~  380 (1005)
                      .|.|+|||++ +++  +++||++.++|.++...     ....+|++|....+
T Consensus        92 ~L~i~V~d~d~~~~~~~~~iG~~~i~l~~~~~~-----~~~~~W~~L~~~~~  138 (142)
T 2dmg_A           92 TLDVAVKNSGGFLSKDKGLLGKVLVALASEELA-----KGWTQWYDLTEDSG  138 (142)
T ss_dssp             EEEEEEEECCCSSCCSCCCCEEEEEECCCSTTT-----TCBCCBCCCBCSCS
T ss_pred             EEEEEEEECCCccccCCcEEEEEEEeccccccc-----ccccceeeccCCCC
Confidence            8999999999 543  57999999999998764     25678999988654

>2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1

Probab=99.57  E-value=1.1e-14  Score=142.50  Aligned_cols=118  Identities=20%  Similarity=0.277  Sum_probs=89.8

Q ss_pred             cceEEEEEEEEecCCCCCCCCCCCCCCCcEEEEEECCEEEEeeecc-CCCCceeccEEEEEEeCCCceEEEEEEeCCCcC
Q 045058          594 SIGILELGILNAVGLHPMKTRDGRGTSDTYCVAKYGHKWVRTRTLV-DNLSPKYNEQYTWEVFDPATVLTVGVFDNSQLG  672 (1005)
Q Consensus       594 ~~g~l~v~i~~a~~L~~~~~~~~~~~~dpyv~~~~g~~~~~T~~~~-~t~nP~wne~f~~~v~~~~~~l~i~v~d~~~~~  672 (1005)
                      ..|.|+|+|++|++|..      .|.+||||+++ + +..+|++++ +++||+|||.|.|.+.+....|.|+|||+| ++
T Consensus        12 ~~~~L~V~V~~A~~l~~------~g~~DPYV~v~-~-~~~kt~~~~~~t~nP~WnE~f~f~v~~~~~~L~~~V~D~d-~~   82 (167)
T 2cjs_A           12 ILSLLCVGVKKAKFDGA------QEKFNTYVTLK-V-QNVESTTIAVRGSQPSWEQDFMFEINRLDLGLTVEVWNKG-LI   82 (167)
T ss_dssp             CCCEEEEEEEEEECSSC------GGGCEEEEEEE-E-TTEEEECCCEESSSCEEEEEEEEECCCTTSEEEEEEEECC-SS
T ss_pred             ceEEEEEEEEEEECCCC------CCCCCeEEEEE-e-cceEEEEecCCCCCCCCCCEEEEEeeCCCCEEEEEEEECC-CC
Confidence            46899999999998851      57889999999 3 346777776 699999999999999988789999999998 66


Q ss_pred             CCCCCCCCcccEEEEEEcccccCCC------EEeeeEeeeecCCC--C--CceeeEEEEEEEEe
Q 045058          673 EKSNGNKDLKIGKVRIRISTLETGR------IYTHSYPLLVLHPT--G--VKKMGELHLAIRFS  726 (1005)
Q Consensus       673 ~~~~~~~d~~lG~~~i~l~~l~~~~------~~~~~~~L~~~~~~--~--~~~~G~i~l~~~~~  726 (1005)
                            +|++||++.|+|+++....      ....||.+.....+  |  ....|.++++++|.
T Consensus        83 ------~dd~iG~~~i~L~~l~~~~~~g~~~~~~~~~~~~~~~g~~~g~~~p~~~~lll~~~~e  140 (167)
T 2cjs_A           83 ------WDTMVGTVWIPLRTIRQSNEEGPGEWLTLDSQAIMADSEICGTKDPTFHRILLDAHFE  140 (167)
T ss_dssp             ------CCEEEEEEEEEGGGSCBCSSCCCCEEEEEEEEEEEETTEEEEEEEEEEEEEEEEEEEE
T ss_pred             ------CCceEEEEEEEHHHhcccCcCCcccceeeeeeeEcCCCCCCceEccccceEEEEEEee
Confidence                  7999999999999985432      33345554432211  1  11245677888875

>3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V hearing, membrane, synapse, transmembrane, membrane protein; 1.95A {Rattus norvegicus}

Probab=99.57  E-value=1.6e-14  Score=132.32  Aligned_cols=119  Identities=18%  Similarity=0.217  Sum_probs=102.2

Q ss_pred             cEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEeeccccC-CCCCCceeeEEEEEeccCccccceEEEEEEEeCCCCCC
Q 045058            4 LKLGVQVVGAHNLLPKDGKGSSSAFVELYFDGQRFRTTIKE-NDLNPVWNESFYFNISDASKLHYLTLEAYIYNNIGDTN   82 (1005)
Q Consensus         4 ~~l~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~T~v~~-~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~~~~   82 (1005)
                      .-|+|+|.+|.||+     |++||||.+.+.+.+++|++++ ++.||+|||.|+|++..+ ......|.|.|+|+++.+ 
T Consensus        21 msL~V~l~~a~~Lp-----g~~Dp~akv~FRg~k~kTkvi~~~~~npvfnE~F~wpl~~~-ld~~e~L~v~V~d~~~v~-   93 (144)
T 3l9b_A           21 MALIVHLKTVSELR-----GRADRIAKVTFRGQSFYSRVLENCEDVADFDETFRWPVASS-IDRNEVLEIQIFNYSKVF-   93 (144)
T ss_dssp             EEEEEEEEEEESCC-----SCEEEEEEEEETTEEEECCCEEEECSCEEEEEEEEEEESSC-CCTTCEEEEEEEEECTTS-
T ss_pred             EEEEEEEEEecCCC-----CCCCCeEEEEEeccceeeEEeccCCCCceEcceEEecCCCC-CCCCCEEEEEEEECcccc-
Confidence            36899999999998     4799999999999999999998 699999999999999763 366789999999997655 


Q ss_pred             CCcccEEEEEeCCcccCCCCceeeeEecccCCCcceeeeEEEEEEEEec
Q 045058           83 SRSFLGKVCLTGNSFVPLSDSVVLHYPLEKRGIFSHVRGELGLKVYITD  131 (1005)
Q Consensus        83 ~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~~~  131 (1005)
                      ++++||++.++|+++...+.. ..+.+|.+.+.. ...++|.+.+.|.+
T Consensus        94 ~nrlIG~~~i~Lq~lv~~~~l-~l~~~LvD~n~~-~~~a~I~l~l~Y~p  140 (144)
T 3l9b_A           94 SNKLIGTFRMVLQKVVEENRV-EVSDTLIDDNNA-IIKTSLSMEVRYQA  140 (144)
T ss_dssp             CCEEEEEEEEESHHHHHHSEE-EEEEEEECTTSC-EEEEEEEEEEEEEE
T ss_pred             CCCEEEEEEEEhHHhccCCeE-EEeecccCCCCC-ccccEEEEEEEecC
Confidence            999999999999999876643 457888887665 46689999998876

>3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V hearing, membrane, synapse, transmembrane, membrane protein; 1.95A {Rattus norvegicus}

Probab=99.56  E-value=3.3e-14  Score=130.28  Aligned_cols=117  Identities=17%  Similarity=0.254  Sum_probs=100.9

Q ss_pred             eEEEEEEEEecCCCCCCCCCCCCCCCcEEEEEECCEEEEeeecc-CCCCceeccEEEEEEeC---CCceEEEEEEeCCCc
Q 045058          596 GILELGILNAVGLHPMKTRDGRGTSDTYCVAKYGHKWVRTRTLV-DNLSPKYNEQYTWEVFD---PATVLTVGVFDNSQL  671 (1005)
Q Consensus       596 g~l~v~i~~a~~L~~~~~~~~~~~~dpyv~~~~g~~~~~T~~~~-~t~nP~wne~f~~~v~~---~~~~l~i~v~d~~~~  671 (1005)
                      -.|+|.|.+|.||+        |++|||+++.+-+.+++|+++. .+.||+|||.|+|++..   ....|.|.|+|++.+
T Consensus        21 msL~V~l~~a~~Lp--------g~~Dp~akv~FRg~k~kTkvi~~~~~npvfnE~F~wpl~~~ld~~e~L~v~V~d~~~v   92 (144)
T 3l9b_A           21 MALIVHLKTVSELR--------GRADRIAKVTFRGQSFYSRVLENCEDVADFDETFRWPVASSIDRNEVLEIQIFNYSKV   92 (144)
T ss_dssp             EEEEEEEEEEESCC--------SCEEEEEEEEETTEEEECCCEEEECSCEEEEEEEEEEESSCCCTTCEEEEEEEEECTT
T ss_pred             EEEEEEEEEecCCC--------CCCCCeEEEEEeccceeeEEeccCCCCceEcceEEecCCCCCCCCCEEEEEEEECccc
Confidence            46899999999998        4789999999999999999998 59999999999999974   467999999999988


Q ss_pred             CCCCCCCCCcccEEEEEEcccccCCCEEeeeEeeeecCCCCCceeeEEEEEEEEeec
Q 045058          672 GEKSNGNKDLKIGKVRIRISTLETGRIYTHSYPLLVLHPTGVKKMGELHLAIRFSCT  728 (1005)
Q Consensus       672 ~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~G~i~l~~~~~~~  728 (1005)
                      +      ++.+||++.|+|.++..+.....+-+|...+.+  .-.++|.+.++|.++
T Consensus        93 ~------~nrlIG~~~i~Lq~lv~~~~l~l~~~LvD~n~~--~~~a~I~l~l~Y~pp  141 (144)
T 3l9b_A           93 F------SNKLIGTFRMVLQKVVEENRVEVSDTLIDDNNA--IIKTSLSMEVRYQAA  141 (144)
T ss_dssp             S------CCEEEEEEEEESHHHHHHSEEEEEEEEECTTSC--EEEEEEEEEEEEEET
T ss_pred             c------CCCEEEEEEEEhHHhccCCeEEEeecccCCCCC--ccccEEEEEEEecCC
Confidence            7      899999999999999887766677777744433  234899999998764

>1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A

Probab=99.55  E-value=4.1e-14  Score=137.75  Aligned_cols=88  Identities=27%  Similarity=0.358  Sum_probs=73.7

Q ss_pred             EEEEEEEEeeeCCCCCCCCCCCcEEEEEE--CCe---EEeeecccCCCCCcccccEEEEEeeCC--CCCeEEEEEEeccC
Q 045058          435 YVRVNVVEAQDLVPTEKNHFPDVYVKAQI--GNQ---VLKTKICQARTLSAVWNEDLLFVAAEP--FEDHLVLTVEDRVG  507 (1005)
Q Consensus       435 ~L~V~v~~a~~L~~~d~~~~~dpyv~v~l--g~~---~~kT~~~~~~t~~P~w~e~f~f~v~~~--~~~~l~i~V~d~d~  507 (1005)
                      .|.|+|++|+||+..+..+.+||||++.+  ++.   .++|++++ ++.||.|||.|.|.+...  ....|.|+|||++.
T Consensus        31 ~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~-~t~nP~wne~f~f~v~~~~l~~~~l~v~V~d~d~  109 (153)
T 1w15_A           31 TLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKK-CTPNAVFNELFVFDIPCESLEEISVEFLVLDSER  109 (153)
T ss_dssp             EEEEEEEEEESCC------CCCEEEEEEEEETTEEEEEEECCCCC-SCSSEEEEEEEEEECCSSSSTTEEEEEEEEECCT
T ss_pred             EEEEEEEEeECCCCcCCCCCCCeEEEEEEEeCCeEeceEecCccc-CCCCCeecceEEEECCHHHhCceEEEEEEEeCCC
Confidence            79999999999999998899999999999  333   67999997 899999999999998765  23689999999999


Q ss_pred             CCCCceeEEEEEcccc
Q 045058          508 PGKDEIIGRVIIPLSA  523 (1005)
Q Consensus       508 ~~~d~~iG~~~i~l~~  523 (1005)
                      ++++++||++.|++++
T Consensus       110 ~~~~~~lG~~~i~l~~  125 (153)
T 1w15_A          110 GSRNEVIGRLVLGATA  125 (153)
T ss_dssp             TSCCEEEEEEEESTTC
T ss_pred             CCCCcEEEEEEECCCC
Confidence            9999999999999987

>2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1

Probab=99.53  E-value=3.8e-14  Score=138.72  Aligned_cols=117  Identities=17%  Similarity=0.144  Sum_probs=85.4

Q ss_pred             cEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEeeccccC-CCCCCceeeEEEEEeccCccccceEEEEEEEeCCCCCC
Q 045058            4 LKLGVQVVGAHNLLPKDGKGSSSAFVELYFDGQRFRTTIKE-NDLNPVWNESFYFNISDASKLHYLTLEAYIYNNIGDTN   82 (1005)
Q Consensus         4 ~~l~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~T~v~~-~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~~~~   82 (1005)
                      +.|.|+|++|++|.   ..|.+||||+|+  ++..+|++++ +++||+|||+|.|.+.+.+    ..|.|+|||++  .+
T Consensus        14 ~~L~V~V~~A~~l~---~~g~~DPYV~v~--~~~~kt~~~~~~t~nP~WnE~f~f~v~~~~----~~L~~~V~D~d--~~   82 (167)
T 2cjs_A           14 SLLCVGVKKAKFDG---AQEKFNTYVTLK--VQNVESTTIAVRGSQPSWEQDFMFEINRLD----LGLTVEVWNKG--LI   82 (167)
T ss_dssp             CEEEEEEEEEECSS---CGGGCEEEEEEE--ETTEEEECCCEESSSCEEEEEEEEECCCTT----SEEEEEEEECC--SS
T ss_pred             EEEEEEEEEEECCC---CCCCCCeEEEEE--ecceEEEEecCCCCCCCCCCEEEEEeeCCC----CEEEEEEEECC--CC
Confidence            58999999999874   367899999999  3445666554 7999999999999997544    47999999996  56


Q ss_pred             CCcccEEEEEeCCcccCCCCc-----eeeeEecccCCCc-----ceeeeEEEEEEEEec
Q 045058           83 SRSFLGKVCLTGNSFVPLSDS-----VVLHYPLEKRGIF-----SHVRGELGLKVYITD  131 (1005)
Q Consensus        83 ~d~~lG~~~i~l~~l~~~~~~-----~~~w~~L~~~~~~-----~~~~G~i~l~~~~~~  131 (1005)
                      +|++||++.|+|.++...+..     ...||.+..+.+.     ...+|.+++.+.+..
T Consensus        83 ~dd~iG~~~i~L~~l~~~~~~g~~~~~~~~~~~~~~~g~~~g~~~p~~~~lll~~~~e~  141 (167)
T 2cjs_A           83 WDTMVGTVWIPLRTIRQSNEEGPGEWLTLDSQAIMADSEICGTKDPTFHRILLDAHFEL  141 (167)
T ss_dssp             CCEEEEEEEEEGGGSCBCSSCCCCEEEEEEEEEEEETTEEEEEEEEEEEEEEEEEEEEC
T ss_pred             CCceEEEEEEEHHHhcccCcCCcccceeeeeeeEcCCCCCCceEccccceEEEEEEeec
Confidence            899999999999998654421     1133444432221     123556777777654

>3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus}

Probab=99.53  E-value=5.8e-14  Score=162.15  Aligned_cols=114  Identities=19%  Similarity=0.249  Sum_probs=98.3

Q ss_pred             CcceEEEEEEEEecCCCCCCCCCCCCCCCcEEEEEECCEEEEeeeccCCCCceeccEEEEEEeC--CCceEEEEEEeCCC
Q 045058          593 PSIGILELGILNAVGLHPMKTRDGRGTSDTYCVAKYGHKWVRTRTLVDNLSPKYNEQYTWEVFD--PATVLTVGVFDNSQ  670 (1005)
Q Consensus       593 ~~~g~l~v~i~~a~~L~~~~~~~~~~~~dpyv~~~~g~~~~~T~~~~~t~nP~wne~f~~~v~~--~~~~l~i~v~d~~~  670 (1005)
                      ...|.|+|+|++|+||+.    |..|++||||+|+++++.+||+++++++||+|||.|.|.+.+  ....|.|+|||+|.
T Consensus       391 ~~~~~L~V~V~~A~~L~~----D~~g~sDPYV~v~l~~~~~kTkvik~tlNP~Wne~f~f~~~~~~~~~~L~~~V~D~D~  466 (540)
T 3nsj_A          391 RGLAHLVVSNFRAEHLWG----DYTTATDAYLKVFFGGQEFRTGVVWNNNNPRWTDKMDFENVLLSTGGPLRVQVWDADY  466 (540)
T ss_dssp             TTEEEEEEEEEEEESCCC----SSCSCCCEEEEEEETTEEEECCCBCSCSSCBCCCCEEEEEEETTTCCCEEEEEEECCS
T ss_pred             CcccEEEEEEEEccCCCc----ccCCCcCeEEEEEECCEeeeeeeecCCCCCCCCeEEEEEEecCCCCCEEEEEEEECCC
Confidence            457999999999999985    457899999999999999999999999999999999999753  57899999999997


Q ss_pred             cCCCCCCCCCcccEEEEEEcccccCCCEEeeeEeeeecCCCCCceeeEEEEEEEEeecc
Q 045058          671 LGEKSNGNKDLKIGKVRIRISTLETGRIYTHSYPLLVLHPTGVKKMGELHLAIRFSCTS  729 (1005)
Q Consensus       671 ~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~G~i~l~~~~~~~~  729 (1005)
                      .+      +||+||.+.++|..   | ....|++|.         .|+|++.+++++..
T Consensus       467 ~~------~dD~LG~~~~~L~~---g-~~~~~~~l~---------~G~l~~~~~~~c~p  506 (540)
T 3nsj_A          467 GW------DDDLLGSCDRSPHS---G-FHEVTCELN---------HGRVKFSYHAKCLP  506 (540)
T ss_dssp             SS------CCEEEEEEEECCCS---E-EEEEEEECS---------SSEEEEEEEEEECT
T ss_pred             CC------CCCEEEEEEEEeeC---C-cEEEEEEcC---------CeEEEEEEEEEECC
Confidence            66      89999999999973   3 356788763         39999999887744

>3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B

Probab=99.51  E-value=4.9e-14  Score=166.37  Aligned_cols=119  Identities=27%  Similarity=0.430  Sum_probs=102.5

Q ss_pred             CcceEEEEEEEEecCCCCCCCCCCCCCCCcEEEEEECCEEEEeeeccCCCCceeccEEEEEEeCC-CceEEEEEEeCCCc
Q 045058          593 PSIGILELGILNAVGLHPMKTRDGRGTSDTYCVAKYGHKWVRTRTLVDNLSPKYNEQYTWEVFDP-ATVLTVGVFDNSQL  671 (1005)
Q Consensus       593 ~~~g~l~v~i~~a~~L~~~~~~~~~~~~dpyv~~~~g~~~~~T~~~~~t~nP~wne~f~~~v~~~-~~~l~i~v~d~~~~  671 (1005)
                      ...|.|+|+|++|+||+++   |..|.+||||++.+++..++|+++++|+||+|||.|.|.+..+ ...|.|+|||+|.+
T Consensus       384 ~~~~~l~v~v~~a~~L~~~---d~~~~sdpyv~v~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~~~~~~l~~~v~d~d~~  460 (510)
T 3jzy_A          384 SGIGRLMVHVIEATELKAC---KPNGKSNPYCEISMGSQSYTTRTIQDTLNPKWNFNCQFFIKDLYQDVLCLTLFDRDQF  460 (510)
T ss_dssp             --CEEEEEEEEEEESCCCC---STTSCCCEEEEEEETTEEEECCCCSSCSSCEEEEEEEEEESCTTTCEEEEEEEECCSS
T ss_pred             CCCceEEEEeceeecCCCC---CCCCCCCeEEEEEECCeeccCCccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCCC
Confidence            4579999999999999965   4578999999999999999999999999999999999999875 46899999999987


Q ss_pred             CCCCCCCCCcccEEEEEEcccccCCCE----EeeeEeeeecCCCCCceeeEEEEEEEEe
Q 045058          672 GEKSNGNKDLKIGKVRIRISTLETGRI----YTHSYPLLVLHPTGVKKMGELHLAIRFS  726 (1005)
Q Consensus       672 ~~~~~~~~d~~lG~~~i~l~~l~~~~~----~~~~~~L~~~~~~~~~~~G~i~l~~~~~  726 (1005)
                      +      +|++||.+.++|+++..+..    ...|++|.     + ...|+|++++++.
T Consensus       461 ~------~~d~lG~~~~~l~~l~~~~~~~~~~~~~~~l~-----~-~~~G~i~l~~~l~  507 (510)
T 3jzy_A          461 S------PDDFLGRTEIPVAKIRTEQESKGPMTRRLLLH-----E-VPTGEVWVRFDLQ  507 (510)
T ss_dssp             S------SCCEEEEEEEEHHHHHHHHHHHCSCCEEEECB-----S-SSSCEEEEEEEEE
T ss_pred             C------CCCceEEEEEEHHHhccccCCCCceeeeecCC-----C-CCCceEEEEEEEE
Confidence            6      89999999999999987543    57899986     2 2459999988874

>3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus}

Probab=99.47  E-value=3.1e-13  Score=156.10  Aligned_cols=113  Identities=22%  Similarity=0.266  Sum_probs=94.5

Q ss_pred             cEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEeeccccCCCCCCceeeEEEEEeccCccccceEEEEEEEeCCCCCCC
Q 045058            4 LKLGVQVVGAHNLLPKDGKGSSSAFVELYFDGQRFRTTIKENDLNPVWNESFYFNISDASKLHYLTLEAYIYNNIGDTNS   83 (1005)
Q Consensus         4 ~~l~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~~~~~   83 (1005)
                      +.|.|+|++|+||.. |..|.+||||+|.++++++||+++++++||+|||+|.|.+....  ....|.|+|||+|. .++
T Consensus       394 ~~L~V~V~~A~~L~~-D~~g~sDPYV~v~l~~~~~kTkvik~tlNP~Wne~f~f~~~~~~--~~~~L~~~V~D~D~-~~~  469 (540)
T 3nsj_A          394 AHLVVSNFRAEHLWG-DYTTATDAYLKVFFGGQEFRTGVVWNNNNPRWTDKMDFENVLLS--TGGPLRVQVWDADY-GWD  469 (540)
T ss_dssp             EEEEEEEEEEESCCC-SSCSCCCEEEEEEETTEEEECCCBCSCSSCBCCCCEEEEEEETT--TCCCEEEEEEECCS-SSC
T ss_pred             cEEEEEEEEccCCCc-ccCCCcCeEEEEEECCEeeeeeeecCCCCCCCCeEEEEEEecCC--CCCEEEEEEEECCC-CCC
Confidence            689999999999998 99999999999999999999999999999999999999964321  23589999999964 458


Q ss_pred             CcccEEEEEeCCcccCCCCceeeeEecccCCCcceeeeEEEEEEEEecCC
Q 045058           84 RSFLGKVCLTGNSFVPLSDSVVLHYPLEKRGIFSHVRGELGLKVYITDDP  133 (1005)
Q Consensus        84 d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~~~~~  133 (1005)
                      |+|||++.++|..    +. ...|++|.        .|+|++++.+.=.|
T Consensus       470 dD~LG~~~~~L~~----g~-~~~~~~l~--------~G~l~~~~~~~c~p  506 (540)
T 3nsj_A          470 DDLLGSCDRSPHS----GF-HEVTCELN--------HGRVKFSYHAKCLP  506 (540)
T ss_dssp             CEEEEEEEECCCS----EE-EEEEEECS--------SSEEEEEEEEEECT
T ss_pred             CCEEEEEEEEeeC----Cc-EEEEEEcC--------CeEEEEEEEEEECC
Confidence            8999999999772    33 35788874        38899888776533

>1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1; phosphoric diester hydrolase, hydrolase, lipid degradation, transducer; HET: I3P; 2.30A {Rattus norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A 1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A 1qat_A

Probab=99.45  E-value=7.3e-13  Score=156.82  Aligned_cols=120  Identities=18%  Similarity=0.253  Sum_probs=101.3

Q ss_pred             CcEEEEEEEEeecCCCCCC--CCCCCcEEEEEECC-----eEeeccccCCC-CCCceeeEEEEEeccCccccceEEEEEE
Q 045058            3 NLKLGVQVVGAHNLLPKDG--KGSSSAFVELYFDG-----QRFRTTIKEND-LNPVWNESFYFNISDASKLHYLTLEAYI   74 (1005)
Q Consensus         3 ~~~l~V~v~~a~~L~~~d~--~g~~dpyv~v~~~~-----~~~~T~v~~~t-~nP~Wne~f~f~v~~~~~~~~~~l~v~V   74 (1005)
                      .+.|+|+|++|++|+.++.  .|.+||||+|++.+     .++||++++++ +||+|||+|.|.+..++.   ..|.|.|
T Consensus       496 ~~~L~V~Vi~A~~L~~~d~~~~~~~DPYV~V~l~g~~~d~~~~kTkvi~~ng~NP~WnE~f~F~v~~~el---~~L~~~V  572 (624)
T 1djx_A          496 PERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEFEVTVPDL---ALVRFMV  572 (624)
T ss_dssp             CEEEEEEEEEEESCCCCSSCSSSCCCEEEEEEEESSGGGCEEEECCCCTTCSSSCEEEEEEEEEESCGGG---CEEEEEE
T ss_pred             ceEEEEEEEEcCCCCcccccccCCCCcEEEEEEecCCCCcceeecccccCCCCCCccCceEEEEEecCCC---CEEEEEE
Confidence            4689999999999998874  68999999999954     58999999887 999999999999976542   5899999


Q ss_pred             EeCCCCCCCCcccEEEEEeCCcccCCCCceeeeEecccCCCcceeeeEEEEEEEEe
Q 045058           75 YNNIGDTNSRSFLGKVCLTGNSFVPLSDSVVLHYPLEKRGIFSHVRGELGLKVYIT  130 (1005)
Q Consensus        75 ~d~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~~  130 (1005)
                      ||+|. .++|++||++.|+|.+|..+    ..|++|....+.....|.|.+++.+.
T Consensus       573 ~D~D~-~~~dd~iG~~~ipl~~L~~G----~r~v~L~d~~g~~~~~~~L~v~i~~~  623 (624)
T 1djx_A          573 EDYDS-SSKNDFIGQSTIPWNSLKQG----YRHVHLLSKNGDQHPSATLFVKISIQ  623 (624)
T ss_dssp             EECCS-SSCCEEEEEEEEEGGGBCCE----EEEEEEECTTSCEEEEEEEEEEEEEE
T ss_pred             EEcCC-CCCCceeEEEEEEHHHcCCC----cEEEeCCCCCcCCCCceEEEEEEEEE
Confidence            99954 56899999999999998653    36999988766545678999988775

>1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1; phosphoric diester hydrolase, hydrolase, lipid degradation, transducer; HET: I3P; 2.30A {Rattus norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A 1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A 1qat_A

Probab=99.45  E-value=5.1e-13  Score=158.16  Aligned_cols=122  Identities=18%  Similarity=0.245  Sum_probs=101.3

Q ss_pred             cceEEEEEEEEecCCCCCCCCCCCCCCCcEEEEEECC-----EEEEeeeccCC-CCceeccEEEEEEeCC-CceEEEEEE
Q 045058          594 SIGILELGILNAVGLHPMKTRDGRGTSDTYCVAKYGH-----KWVRTRTLVDN-LSPKYNEQYTWEVFDP-ATVLTVGVF  666 (1005)
Q Consensus       594 ~~g~l~v~i~~a~~L~~~~~~~~~~~~dpyv~~~~g~-----~~~~T~~~~~t-~nP~wne~f~~~v~~~-~~~l~i~v~  666 (1005)
                      ..+.|+|+|++|++|++++. ...+.+||||+|.+.+     ...||++++++ +||+|||+|.|.+..+ ...|.|+||
T Consensus       495 ~~~~L~V~Vi~A~~L~~~d~-~~~~~~DPYV~V~l~g~~~d~~~~kTkvi~~ng~NP~WnE~f~F~v~~~el~~L~~~V~  573 (624)
T 1djx_A          495 RPERLRVRIISGQQLPKVNK-NKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEFEVTVPDLALVRFMVE  573 (624)
T ss_dssp             CCEEEEEEEEEEESCCCCSS-CSSSCCCEEEEEEEESSGGGCEEEECCCCTTCSSSCEEEEEEEEEESCGGGCEEEEEEE
T ss_pred             cceEEEEEEEEcCCCCcccc-cccCCCCcEEEEEEecCCCCcceeecccccCCCCCCccCceEEEEEecCCCCEEEEEEE
Confidence            56899999999999997652 1367899999999943     67899999998 9999999999999876 478999999


Q ss_pred             eCCCcCCCCCCCCCcccEEEEEEcccccCCCEEeeeEeeeecCCCCCceeeEEEEEEEEe
Q 045058          667 DNSQLGEKSNGNKDLKIGKVRIRISTLETGRIYTHSYPLLVLHPTGVKKMGELHLAIRFS  726 (1005)
Q Consensus       667 d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~G~i~l~~~~~  726 (1005)
                      |+|.++      +|++||.+.|||+.|..|.   +|++|....+... ..|.|.+.++|+
T Consensus       574 D~D~~~------~dd~iG~~~ipl~~L~~G~---r~v~L~d~~g~~~-~~~~L~v~i~~~  623 (624)
T 1djx_A          574 DYDSSS------KNDFIGQSTIPWNSLKQGY---RHVHLLSKNGDQH-PSATLFVKISIQ  623 (624)
T ss_dssp             ECCSSS------CCEEEEEEEEEGGGBCCEE---EEEEEECTTSCEE-EEEEEEEEEEEE
T ss_pred             EcCCCC------CCceeEEEEEEHHHcCCCc---EEEeCCCCCcCCC-CceEEEEEEEEE
Confidence            999876      8999999999999998864   6999975443222 358888888763

>3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B

Probab=99.43  E-value=4.5e-13  Score=158.07  Aligned_cols=121  Identities=22%  Similarity=0.368  Sum_probs=104.3

Q ss_pred             ceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeeecCCCCCeeeeEEEEeecCCCCcEEEEEEEeCC-CCCCc
Q 045058          268 RMYFLYVRVVKARELPAMDLTGSIDPFVEVKIGNYKGITKHYEKNQNPQWHQVFAFSRDRMQASVLEVVIKDKD-LVKDD  346 (1005)
Q Consensus       268 ~~~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~~~~~kT~~~~~~~nP~wne~f~f~~~~~~~~~l~v~V~d~~-~~~d~  346 (1005)
                      ..+.|.|+|++|++|+..+.+|.+||||++++++..++|+++++++||.|||+|.|.+.......|.|+|||+| +++|+
T Consensus       385 ~~~~l~v~v~~a~~L~~~d~~~~sdpyv~v~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~~~~~~l~~~v~d~d~~~~~d  464 (510)
T 3jzy_A          385 GIGRLMVHVIEATELKACKPNGKSNPYCEISMGSQSYTTRTIQDTLNPKWNFNCQFFIKDLYQDVLCLTLFDRDQFSPDD  464 (510)
T ss_dssp             -CEEEEEEEEEEESCCCCSTTSCCCEEEEEEETTEEEECCCCSSCSSCEEEEEEEEEESCTTTCEEEEEEEECCSSSSCC
T ss_pred             CCceEEEEeceeecCCCCCCCCCCCeEEEEEECCeeccCCccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCCCCCCC
Confidence            45789999999999999999999999999999999999999999999999999999998877788999999999 78899


Q ss_pred             eeEEEEEEceecCCCCCCCCCCCCeEEEeecCCCCccceEEEEEEEE
Q 045058          347 FVGIVRFDINEVPLRVPPDSPLAPEWYRLEDKKGEKIKGELMLAVWI  393 (1005)
Q Consensus       347 ~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~G~i~l~~~~  393 (1005)
                      +||++.+++.++..+.... .....|+.|....    .|+|.+++.+
T Consensus       465 ~lG~~~~~l~~l~~~~~~~-~~~~~~~~l~~~~----~G~i~l~~~l  506 (510)
T 3jzy_A          465 FLGRTEIPVAKIRTEQESK-GPMTRRLLLHEVP----TGEVWVRFDL  506 (510)
T ss_dssp             EEEEEEEEHHHHHHHHHHH-CSCCEEEECBSSS----SCEEEEEEEE
T ss_pred             ceEEEEEEHHHhccccCCC-CceeeeecCCCCC----CceEEEEEEE
Confidence            9999999999987542111 1257899998753    3888888765

>3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus}

Probab=99.42  E-value=1.6e-14  Score=166.88  Aligned_cols=124  Identities=19%  Similarity=0.300  Sum_probs=21.3

Q ss_pred             cceEEEEEEEEecCCCCCCCCCCCCCCCcEEEEEECCE-EEEeeeccCC---CCceeccEEEEEEeCCCceEEEEEEeC-
Q 045058          594 SIGILELGILNAVGLHPMKTRDGRGTSDTYCVAKYGHK-WVRTRTLVDN---LSPKYNEQYTWEVFDPATVLTVGVFDN-  668 (1005)
Q Consensus       594 ~~g~l~v~i~~a~~L~~~~~~~~~~~~dpyv~~~~g~~-~~~T~~~~~t---~nP~wne~f~~~v~~~~~~l~i~v~d~-  668 (1005)
                      ..|.|+|+|++|+||+++|        ||||++.+++. +.||+++++|   +||+|||+|+|.+......|.|+|||+ 
T Consensus         9 ~~~~L~V~VieAk~L~~~d--------dpYv~v~l~~~~~~kT~v~~kt~~glnP~WnE~F~f~~~~~~~~L~v~V~d~~   80 (483)
T 3bxj_A            9 VDNVLKLWIIEARELPPKK--------RYYCELCLDDMLYARTTSKPRSASGDTVFWGEHFEFNNLPAVRALRLHLYRDS   80 (483)
T ss_dssp             EEECC-----------------------------------------------------CCEECC----------------
T ss_pred             eccEEEEEEEEcCCcCCCC--------CCeEEEEECCeEEeeeeEEeCCCCCCCCccccEEEEecCCCccEEEEEEEecC
Confidence            3588999999999999643        99999999876 6799999999   999999999999766568999999994 


Q ss_pred             CCcCCCCCCCCCcccEEEEEEcccccCCCEEeeeEeeeecCC---------------------CCCceeeEEEEEEEEee
Q 045058          669 SQLGEKSNGNKDLKIGKVRIRISTLETGRIYTHSYPLLVLHP---------------------TGVKKMGELHLAIRFSC  727 (1005)
Q Consensus       669 ~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~---------------------~~~~~~G~i~l~~~~~~  727 (1005)
                      |...   ...+|++||++.|+++++..+...+.||+|.....                     ++....|.|+|+++|..
T Consensus        81 d~~~---~~~~d~~lG~v~i~l~~l~~~~~~~~W~~L~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~G~lrL~v~~~~  157 (483)
T 3bxj_A           81 DKKR---KKDKAGYVGLVTVPVATLAGRHFTEQWYPVTLPTGSGGSGGMGSGGGGGSGGGSGGKGKGGCPAVRLKARYQT  157 (483)
T ss_dssp             -----------------------------CCEECC--------------------------------------CEEEEEE
T ss_pred             Cccc---cCCCCceEEEEEEEHHHhcCCCCCCeEEECCCCCCccccccccccccccccccccccCCCCCceEEEEEEeee
Confidence            4200   12389999999999999998888899999964432                     12234699999999865


Q ss_pred             c
Q 045058          728 T  728 (1005)
Q Consensus       728 ~  728 (1005)
                      .
T Consensus       158 ~  158 (483)
T 3bxj_A          158 M  158 (483)
T ss_dssp             C
T ss_pred             e
Confidence            4

>1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A

Probab=99.36  E-value=7.7e-13  Score=157.25  Aligned_cols=106  Identities=25%  Similarity=0.317  Sum_probs=91.2

Q ss_pred             CCcEEEEEEEEeecCCC---CCCCCCCCcEEEEEECC---eEeeccccCCCCCCceeeEEEEEeccCccccceEEEEEEE
Q 045058            2 RNLKLGVQVVGAHNLLP---KDGKGSSSAFVELYFDG---QRFRTTIKENDLNPVWNESFYFNISDASKLHYLTLEAYIY   75 (1005)
Q Consensus         2 ~~~~l~V~v~~a~~L~~---~d~~g~~dpyv~v~~~~---~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~   75 (1005)
                      +.+.|+|+|++|++|+.   +|..|.+||||+|++.+   .++||+++++++||+|||+|.|.+....   ...|.|+||
T Consensus        16 ~~g~L~V~Vi~A~nL~~~~~~D~~g~sDPYV~V~l~~~~~~k~kTkvik~tlNPvWNEtF~F~v~~~~---~~~L~~~V~   92 (749)
T 1cjy_A           16 YSHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQ---ENVLEITLM   92 (749)
T ss_dssp             CCEEEEEEEEEEECCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECTTS---CCBCEEEEE
T ss_pred             CccEEEEEEEEEECCCCccccCCCCCcCeEEEEEEecCCCCeEecceEcCCCCCeeeeEEEEEecCCC---CCEEEEEEE
Confidence            35799999999999998   88889999999999984   5899999999999999999999997543   358999999


Q ss_pred             eCCCCCCCCcccEEEEEeCCcccCCCCceeeeEecccC
Q 045058           76 NNIGDTNSRSFLGKVCLTGNSFVPLSDSVVLHYPLEKR  113 (1005)
Q Consensus        76 d~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~  113 (1005)
                      |+|. .+ |++||++.|+|.++..... ...|++|.+.
T Consensus        93 D~D~-~~-ddfIG~v~I~L~~L~~g~~-~~~w~~L~~~  127 (749)
T 1cjy_A           93 DANY-VM-DETLGTATFTVSSMKVGEK-KEVPFIFNQV  127 (749)
T ss_dssp             ECCS-SS-CEEEEEECCBSTTSCTTCC-CCEEEEETTT
T ss_pred             ECCC-CC-CceeEEEEEEHHHcCCCCc-eEEEEecCCC
Confidence            9965 45 9999999999999866543 3579999765

>3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus}

Probab=99.29  E-value=2.9e-13  Score=156.42  Aligned_cols=119  Identities=22%  Similarity=0.233  Sum_probs=18.8

Q ss_pred             CcEEEEEEEEeecCCCCCCCCCCCcEEEEEECCe-EeeccccCCC---CCCceeeEEEEEeccCccccceEEEEEEEeC-
Q 045058            3 NLKLGVQVVGAHNLLPKDGKGSSSAFVELYFDGQ-RFRTTIKEND---LNPVWNESFYFNISDASKLHYLTLEAYIYNN-   77 (1005)
Q Consensus         3 ~~~l~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~-~~~T~v~~~t---~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~-   77 (1005)
                      .+.|+|+|++|+||+++|     ||||+++++++ ..||+++++|   +||+|||+|.|.+...    ...|.|.|||+ 
T Consensus        10 ~~~L~V~VieAk~L~~~d-----dpYv~v~l~~~~~~kT~v~~kt~~glnP~WnE~F~f~~~~~----~~~L~v~V~d~~   80 (483)
T 3bxj_A           10 DNVLKLWIIEARELPPKK-----RYYCELCLDDMLYARTTSKPRSASGDTVFWGEHFEFNNLPA----VRALRLHLYRDS   80 (483)
T ss_dssp             EECC--------------------------------------------------CCEECC--------------------
T ss_pred             ccEEEEEEEEcCCcCCCC-----CCeEEEEECCeEEeeeeEEeCCCCCCCCccccEEEEecCCC----ccEEEEEEEecC
Confidence            367999999999999876     99999999886 6799999999   9999999999996432    25899999995 


Q ss_pred             CC--CCCCCcccEEEEEeCCcccCCCCceeeeEecccCCC----------------------cceeeeEEEEEEEEec
Q 045058           78 IG--DTNSRSFLGKVCLTGNSFVPLSDSVVLHYPLEKRGI----------------------FSHVRGELGLKVYITD  131 (1005)
Q Consensus        78 ~~--~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~----------------------~~~~~G~i~l~~~~~~  131 (1005)
                      +.  ..++|++||++.|++.++..+.. .+.||+|.....                      .....|.|++++.+..
T Consensus        81 d~~~~~~~d~~lG~v~i~l~~l~~~~~-~~~W~~L~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~G~lrL~v~~~~  157 (483)
T 3bxj_A           81 DKKRKKDKAGYVGLVTVPVATLAGRHF-TEQWYPVTLPTGSGGSGGMGSGGGGGSGGGSGGKGKGGCPAVRLKARYQT  157 (483)
T ss_dssp             --------------------------C-CEECC--------------------------------------CEEEEEE
T ss_pred             CccccCCCCceEEEEEEEHHHhcCCCC-CCeEEECCCCCCccccccccccccccccccccccCCCCCceEEEEEEeee
Confidence            31  24589999999999999876543 468999954321                      1235699999998877

>1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A

Probab=99.28  E-value=3.8e-12  Score=151.39  Aligned_cols=105  Identities=24%  Similarity=0.441  Sum_probs=93.0

Q ss_pred             ceeEEEEEEEEeecCCC---CCCCCCCCcEEEEEECC---eeeeeeeecCCCCCeeeeEEEEeecCCCCcEEEEEEEeCC
Q 045058          268 RMYFLYVRVVKARELPA---MDLTGSIDPFVEVKIGN---YKGITKHYEKNQNPQWHQVFAFSRDRMQASVLEVVIKDKD  341 (1005)
Q Consensus       268 ~~~~L~V~v~~a~~L~~---~~~~g~~dPyv~v~~~~---~~~kT~~~~~~~nP~wne~f~f~~~~~~~~~l~v~V~d~~  341 (1005)
                      +.+.|.|+|++|++|+.   +|..|.+||||++++++   .++||+++++++||+|||+|.|.+.......|.|+|||+|
T Consensus        16 ~~g~L~V~Vi~A~nL~~~~~~D~~g~sDPYV~V~l~~~~~~k~kTkvik~tlNPvWNEtF~F~v~~~~~~~L~~~V~D~D   95 (749)
T 1cjy_A           16 YSHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDAN   95 (749)
T ss_dssp             CCEEEEEEEEEEECCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECTTSCCBCEEEEEECC
T ss_pred             CccEEEEEEEEEECCCCccccCCCCCcCeEEEEEEecCCCCeEecceEcCCCCCeeeeEEEEEecCCCCCEEEEEEEECC
Confidence            35889999999999998   78789999999999985   5789999999999999999999998766678999999999


Q ss_pred             -CCCCceeEEEEEEceecCCCCCCCCCCCCeEEEeecC
Q 045058          342 -LVKDDFVGIVRFDINEVPLRVPPDSPLAPEWYRLEDK  378 (1005)
Q Consensus       342 -~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~  378 (1005)
                       ++ |++||++.++|.++..+     .....|++|...
T Consensus        96 ~~~-ddfIG~v~I~L~~L~~g-----~~~~~w~~L~~~  127 (749)
T 1cjy_A           96 YVM-DETLGTATFTVSSMKVG-----EKKEVPFIFNQV  127 (749)
T ss_dssp             SSS-CEEEEEECCBSTTSCTT-----CCCCEEEEETTT
T ss_pred             CCC-CceeEEEEEEHHHcCCC-----CceEEEEecCCC
Confidence             66 99999999999999654     346789999754

>3ohm_B 1-phosphatidylinositol-4,5-bisphosphate phosphodi beta-3; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Homo sapiens}

Probab=99.12  E-value=3.1e-10  Score=137.14  Aligned_cols=112  Identities=21%  Similarity=0.285  Sum_probs=93.0

Q ss_pred             cEEEEEEEEeecCCCCCCCCCCCcEEEEEECC------eEeeccccCC-CCCCceee-EEEEE-eccCccccceEEEEEE
Q 045058            4 LKLGVQVVGAHNLLPKDGKGSSSAFVELYFDG------QRFRTTIKEN-DLNPVWNE-SFYFN-ISDASKLHYLTLEAYI   74 (1005)
Q Consensus         4 ~~l~V~v~~a~~L~~~d~~g~~dpyv~v~~~~------~~~~T~v~~~-t~nP~Wne-~f~f~-v~~~~~~~~~~l~v~V   74 (1005)
                      ..|.|+|++|++|+.+    .+||||+|.+.+      .++||+++++ ++||+||| +|.|. +..++   ...|.|.|
T Consensus       725 ~~L~V~Visaq~L~~~----~~DPYV~V~l~g~p~D~~~k~kTkvi~~NglNPvWnEe~F~F~~V~~pe---la~Lrf~V  797 (885)
T 3ohm_B          725 NALRVKVISGQFLSDR----KVGIYVEVDMFGLPVDTRRKYRTRTSQGNSFNPVWDEEPFDFPKVVLPT---LASLRIAA  797 (885)
T ss_dssp             EEEEEEEEEEESCCSS----CCCEEEEEEEESSTTTCBCCCCCCCCSSCSSSCBCCCCCEEEEEESCGG---GCEEEEEE
T ss_pred             eEEEEEEEEeccCccc----CCCcEEEEEEeCCCcccccceeeEEeeCCCcCCeeccceeEEeeEEcCC---cCEEEEEE
Confidence            4799999999999853    589999999965      3579998865 69999999 69998 75554   24799999


Q ss_pred             EeCCCCCCCCcccEEEEEeCCcccCCCCceeeeEecccCCCcceeeeEEEEEEEEec
Q 045058           75 YNNIGDTNSRSFLGKVCLTGNSFVPLSDSVVLHYPLEKRGIFSHVRGELGLKVYITD  131 (1005)
Q Consensus        75 ~d~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~~~  131 (1005)
                      ||++     ++|||++.|+|..|..+    ..+++|....+..-..|.|.+.+.+.+
T Consensus       798 ~D~d-----ddfiG~~~lpL~~L~~G----yR~vpL~~~~g~~l~~atLfv~i~~~~  845 (885)
T 3ohm_B          798 FEEG-----GKFVGHRILPVSAIRSG----YHYVCLRNEANQPLCLPALLIYTEASD  845 (885)
T ss_dssp             EETT-----TEEEEEEEEETTTCCCE----EEEEEEECTTSCEEEEEEEEEEEEEEE
T ss_pred             EcCC-----ccEEeeEEEEHHHcCCC----ceEEEecCCCCCccCceEEEEEEEEEe
Confidence            9973     78999999999998653    357999888776667899999999887

>3qr0_A Phospholipase C-beta (PLC-beta); PH domain, EF hand, C2 domain, TIM barrel domain, hydrolase, calcium binding, phospholipid binding; 2.00A {Sepia officinalis} PDB: 3qr1_A

Probab=99.11  E-value=5.6e-10  Score=134.31  Aligned_cols=112  Identities=21%  Similarity=0.347  Sum_probs=93.7

Q ss_pred             cEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-------eEeeccccCC-CCCCceeeE-EEEE-eccCccccceEEEEE
Q 045058            4 LKLGVQVVGAHNLLPKDGKGSSSAFVELYFDG-------QRFRTTIKEN-DLNPVWNES-FYFN-ISDASKLHYLTLEAY   73 (1005)
Q Consensus         4 ~~l~V~v~~a~~L~~~d~~g~~dpyv~v~~~~-------~~~~T~v~~~-t~nP~Wne~-f~f~-v~~~~~~~~~~l~v~   73 (1005)
                      +.|.|+|++|++|+.+    .+||||+|.+.+       .++||+++++ ++||+|||+ |.|. +..++.   ..|.|.
T Consensus       650 ~~L~V~Visaq~L~~~----~~DPYV~V~l~g~p~d~~~~k~kTkvv~~nglNPvWNE~~F~F~~v~~pel---a~Lrf~  722 (816)
T 3qr0_A          650 GTIEIKIISAQFLSDK----QISSYVEVEMYGLPTDTVRKKFKTKIIENNGMDPYYDEKVFVFKKVVLPDL---AVVRII  722 (816)
T ss_dssp             EEEEEEEEEEECCCSS----CCCEEEEEEEESSGGGCEEEEEECCCBCSCSSCCBCCCCCEEEEEESCGGG---CEEEEE
T ss_pred             eEEEEEEEEcccCCCC----CCCCeEEEEEeCCCcccccceeeeEEecCCCCCCeEcCceeEEccccCCCc---cEEEEE
Confidence            5799999999999853    589999999865       5789998775 699999998 9998 765542   589999


Q ss_pred             EEeCCCCCCCCcccEEEEEeCCcccCCCCceeeeEecccCCCcceeeeEEEEEEEEec
Q 045058           74 IYNNIGDTNSRSFLGKVCLTGNSFVPLSDSVVLHYPLEKRGIFSHVRGELGLKVYITD  131 (1005)
Q Consensus        74 V~d~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~~~  131 (1005)
                      |||+     .++|||++.++|..|..+    ..+++|....+..-..+.|.+.+.+.+
T Consensus       723 V~D~-----dddfiG~~~ipL~~L~~G----yR~vpL~~~~g~~~~~atLfv~i~~~~  771 (816)
T 3qr0_A          723 VSEE-----NGKFIGHRVMPLDGIKPG----YRHVPLRNESNRPLGLASVFAHIVAKD  771 (816)
T ss_dssp             EEET-----TSCEEEEEEEESTTCCCE----EEEEEEECTTSCEEEEEEEEEEEEEEE
T ss_pred             EEec-----CCCeeeEEEEEHHHcCCc----ceEEEEeCCCCCCCCceEEEEEEEEEe
Confidence            9997     378999999999998763    357999988776566799999998887

>3qr0_A Phospholipase C-beta (PLC-beta); PH domain, EF hand, C2 domain, TIM barrel domain, hydrolase, calcium binding, phospholipid binding; 2.00A {Sepia officinalis} PDB: 3qr1_A

Probab=99.10  E-value=3.5e-10  Score=136.09  Aligned_cols=111  Identities=19%  Similarity=0.299  Sum_probs=90.7

Q ss_pred             ceEEEEEEEEecCCCCCCCCCCCCCCCcEEEEEECC-------EEEEeeeccC-CCCceeccE-EEEE-EeCC-CceEEE
Q 045058          595 IGILELGILNAVGLHPMKTRDGRGTSDTYCVAKYGH-------KWVRTRTLVD-NLSPKYNEQ-YTWE-VFDP-ATVLTV  663 (1005)
Q Consensus       595 ~g~l~v~i~~a~~L~~~~~~~~~~~~dpyv~~~~g~-------~~~~T~~~~~-t~nP~wne~-f~~~-v~~~-~~~l~i  663 (1005)
                      .+.|+|+|++|++|+.       ..+||||+|.+.+       +.+||+++++ ++||+|||+ |.|. |..+ ...|.|
T Consensus       649 ~~~L~V~Visaq~L~~-------~~~DPYV~V~l~g~p~d~~~~k~kTkvv~~nglNPvWNE~~F~F~~v~~pela~Lrf  721 (816)
T 3qr0_A          649 AGTIEIKIISAQFLSD-------KQISSYVEVEMYGLPTDTVRKKFKTKIIENNGMDPYYDEKVFVFKKVVLPDLAVVRI  721 (816)
T ss_dssp             CEEEEEEEEEEECCCS-------SCCCEEEEEEEESSGGGCEEEEEECCCBCSCSSCCBCCCCCEEEEEESCGGGCEEEE
T ss_pred             ceEEEEEEEEcccCCC-------CCCCCeEEEEEeCCCcccccceeeeEEecCCCCCCeEcCceeEEccccCCCccEEEE
Confidence            4899999999999983       3689999999954       5789999986 599999998 9998 7654 468999


Q ss_pred             EEEeCCCcCCCCCCCCCcccEEEEEEcccccCCCEEeeeEeeeecCCCCCceeeEEEEEEEEe
Q 045058          664 GVFDNSQLGEKSNGNKDLKIGKVRIRISTLETGRIYTHSYPLLVLHPTGVKKMGELHLAIRFS  726 (1005)
Q Consensus       664 ~v~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~G~i~l~~~~~  726 (1005)
                      .|||+          .+++||.+.|||+.|..|-   +++||....+... ..++|.+.+.+.
T Consensus       722 ~V~D~----------dddfiG~~~ipL~~L~~Gy---R~vpL~~~~g~~~-~~atLfv~i~~~  770 (816)
T 3qr0_A          722 IVSEE----------NGKFIGHRVMPLDGIKPGY---RHVPLRNESNRPL-GLASVFAHIVAK  770 (816)
T ss_dssp             EEEET----------TSCEEEEEEEESTTCCCEE---EEEEEECTTSCEE-EEEEEEEEEEEE
T ss_pred             EEEec----------CCCeeeEEEEEHHHcCCcc---eEEEEeCCCCCCC-CceEEEEEEEEE
Confidence            99998          3799999999999999874   6799985443322 248888888875

>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A

Probab=99.08  E-value=1.8e-10  Score=139.68  Aligned_cols=107  Identities=25%  Similarity=0.358  Sum_probs=91.7

Q ss_pred             CcEEEEEEEEeecCCCCCCCCCCCcEEEEEE-----CCeEeeccccCCCCCCceeeEEEEEeccCccccceEEEEEEEeC
Q 045058            3 NLKLGVQVVGAHNLLPKDGKGSSSAFVELYF-----DGQRFRTTIKENDLNPVWNESFYFNISDASKLHYLTLEAYIYNN   77 (1005)
Q Consensus         3 ~~~l~V~v~~a~~L~~~d~~g~~dpyv~v~~-----~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~   77 (1005)
                      .+.|.|+|++|++|.++|..|.+||||++++     ...+++|+++++++||+|||+|.|.+...+  ....|.|+|||+
T Consensus       171 ~~~L~V~v~~a~~L~~~d~~g~sDPyvkv~l~p~~~~~~k~kT~v~~~tlnP~wne~f~f~~~~~~--~~~~L~v~v~d~  248 (674)
T 3pfq_A          171 REVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKSSLNPEWNETFRFQLKESD--KDRRLSVEIWDW  248 (674)
T ss_dssp             SSEEEEEEEEEESCCCCSTTSSCCEEEEEEEESCSSCCSCEECCCCSSCSSCEEEEEEEEECCSTT--TTCEEEEEEEEC
T ss_pred             cceeeeeeecccccCCCCcccccCcccccccccCccccccccccccccccCCCccceeeeecccCC--ccceeeeEEeec
Confidence            4679999999999999999999999999998     345799999999999999999999986543  234699999999


Q ss_pred             CCCCCCCcccEEEEEeCCcccCCCCceeeeEecccCC
Q 045058           78 IGDTNSRSFLGKVCLTGNSFVPLSDSVVLHYPLEKRG  114 (1005)
Q Consensus        78 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~  114 (1005)
                      +. .++|++||++.+++.++...+.  ..|+.|....
T Consensus       249 d~-~~~dd~iG~~~i~l~~l~~~~~--~~w~~Lls~~  282 (674)
T 3pfq_A          249 DL-TSRNDFMGSLSFGISELQKAGV--DGWFKLLSQE  282 (674)
T ss_dssp             CS-SSCCEECCBCCCBTTHHHHCCE--EEEEECBCTT
T ss_pred             cc-ccccccccccccchhhhccCCc--ccceeecccc
Confidence            64 5699999999999999877553  5799987653

>3ohm_B 1-phosphatidylinositol-4,5-bisphosphate phosphodi beta-3; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Homo sapiens}

Probab=99.07  E-value=2.7e-10  Score=137.69  Aligned_cols=111  Identities=18%  Similarity=0.240  Sum_probs=89.7

Q ss_pred             ceEEEEEEEEecCCCCCCCCCCCCCCCcEEEEEECC------EEEEeeeccC-CCCceecc-EEEEE-EeCC-CceEEEE
Q 045058          595 IGILELGILNAVGLHPMKTRDGRGTSDTYCVAKYGH------KWVRTRTLVD-NLSPKYNE-QYTWE-VFDP-ATVLTVG  664 (1005)
Q Consensus       595 ~g~l~v~i~~a~~L~~~~~~~~~~~~dpyv~~~~g~------~~~~T~~~~~-t~nP~wne-~f~~~-v~~~-~~~l~i~  664 (1005)
                      ...|+|+|++|++|+.       ..+||||+|.+.+      ..+||+++.+ ++||+||| .|.|. |..+ ...|.|+
T Consensus       724 ~~~L~V~Visaq~L~~-------~~~DPYV~V~l~g~p~D~~~k~kTkvi~~NglNPvWnEe~F~F~~V~~pela~Lrf~  796 (885)
T 3ohm_B          724 ANALRVKVISGQFLSD-------RKVGIYVEVDMFGLPVDTRRKYRTRTSQGNSFNPVWDEEPFDFPKVVLPTLASLRIA  796 (885)
T ss_dssp             CEEEEEEEEEEESCCS-------SCCCEEEEEEEESSTTTCBCCCCCCCCSSCSSSCBCCCCCEEEEEESCGGGCEEEEE
T ss_pred             ceEEEEEEEEeccCcc-------cCCCcEEEEEEeCCCcccccceeeEEeeCCCcCCeeccceeEEeeEEcCCcCEEEEE
Confidence            3589999999999983       3689999999953      2479999986 59999999 69998 6554 4689999


Q ss_pred             EEeCCCcCCCCCCCCCcccEEEEEEcccccCCCEEeeeEeeeecCCCCCceeeEEEEEEEEe
Q 045058          665 VFDNSQLGEKSNGNKDLKIGKVRIRISTLETGRIYTHSYPLLVLHPTGVKKMGELHLAIRFS  726 (1005)
Q Consensus       665 v~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~G~i~l~~~~~  726 (1005)
                      |||+|          +++||.+.|||+.|..|-   +++||....+... ..|.|.+.+.+.
T Consensus       797 V~D~d----------ddfiG~~~lpL~~L~~Gy---R~vpL~~~~g~~l-~~atLfv~i~~~  844 (885)
T 3ohm_B          797 AFEEG----------GKFVGHRILPVSAIRSGY---HYVCLRNEANQPL-CLPALLIYTEAS  844 (885)
T ss_dssp             EEETT----------TEEEEEEEEETTTCCCEE---EEEEEECTTSCEE-EEEEEEEEEEEE
T ss_pred             EEcCC----------ccEEeeEEEEHHHcCCCc---eEEEecCCCCCcc-CceEEEEEEEEE
Confidence            99983          799999999999999874   5789975443322 358999999875

>2zkm_X 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta-2; phospholipase C, phosphoinositide phospholipase, PLC-beta-2, calcium, coiled coil; 1.62A {Homo sapiens} SCOP: a.39.1.7 b.7.1.1 b.55.1.1 c.1.18.1 PDB: 2fju_B

Probab=99.07  E-value=9.1e-10  Score=133.51  Aligned_cols=112  Identities=24%  Similarity=0.340  Sum_probs=89.8

Q ss_pred             CcEEEEEEEEeecCCCCCCCCCCCcEEEEEECC------eEeecc-ccC-CCCCCceee-EEEE-EeccCccccceEEEE
Q 045058            3 NLKLGVQVVGAHNLLPKDGKGSSSAFVELYFDG------QRFRTT-IKE-NDLNPVWNE-SFYF-NISDASKLHYLTLEA   72 (1005)
Q Consensus         3 ~~~l~V~v~~a~~L~~~d~~g~~dpyv~v~~~~------~~~~T~-v~~-~t~nP~Wne-~f~f-~v~~~~~~~~~~l~v   72 (1005)
                      .+.|.|+|++|++|+.    +.+||||+|.+.+      +++||+ +++ +++||+||| +|.| .+..++.   ..|.|
T Consensus       677 ~~~L~V~Visa~~L~~----~~~DPYV~V~l~g~p~d~~~k~kTk~vv~~n~~NPvWnEe~f~F~~v~~~el---~~Lr~  749 (799)
T 2zkm_X          677 ATTLSITVISGQFLSE----RSVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKILMPEL---ASLRV  749 (799)
T ss_dssp             CEEEEEEEEEEESCCS----SCCCEEEEEEEECCTTSCCCCEECCCCSSSCCSSCBCCCCCEEEEEESSGGG---CEEEE
T ss_pred             eeeEEEEEEeccccCc----cCCCcEEEEEEEecCCCcccceeecccccCCCCCCeeecceEEEEEEccCCc---cEEEE
Confidence            3689999999999985    4689999999943      367999 775 579999999 7999 7865542   47999


Q ss_pred             EEEeCCCCCCCCcccEEEEEeCCcccCCCCceeeeEecccCCCcceeeeEEEEEEEEe
Q 045058           73 YIYNNIGDTNSRSFLGKVCLTGNSFVPLSDSVVLHYPLEKRGIFSHVRGELGLKVYIT  130 (1005)
Q Consensus        73 ~V~d~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~~  130 (1005)
                      .|||++     +++||++.|+|..|..+    ..|++|....+..-..+.|.+++.+.
T Consensus       750 ~V~D~d-----~d~iG~~~ipl~~L~~G----~r~v~L~~~~g~~~~~~~Lfv~i~~~  798 (799)
T 2zkm_X          750 AVMEEG-----NKFLGHRIIPINALNSG----YHHLCLHSESNMPLTMPALFIFLEMK  798 (799)
T ss_dssp             EEEETT-----TEEEEEEEEEGGGBCCE----EEEEEEECTTCCEEEEEEEEEEEEEE
T ss_pred             EEEEeC-----CCccceEeeehhhcCCC----cEEEeccCCCCCCCCceEEEEEEEEE
Confidence            999973     78999999999998653    45899987765545568888888764

>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A

Probab=99.04  E-value=2.9e-10  Score=137.91  Aligned_cols=104  Identities=24%  Similarity=0.391  Sum_probs=91.0

Q ss_pred             ceEEEEEEEEecCCCCCCCCCCCCCCCcEEEEEE-----CCEEEEeeeccCCCCceeccEEEEEEeC--CCceEEEEEEe
Q 045058          595 IGILELGILNAVGLHPMKTRDGRGTSDTYCVAKY-----GHKWVRTRTLVDNLSPKYNEQYTWEVFD--PATVLTVGVFD  667 (1005)
Q Consensus       595 ~g~l~v~i~~a~~L~~~~~~~~~~~~dpyv~~~~-----g~~~~~T~~~~~t~nP~wne~f~~~v~~--~~~~l~i~v~d  667 (1005)
                      .+.|.|.|++|++|.++|   ..|.+||||++.+     +....+|+++++++||+|||.|.|.+..  ....|.|+|||
T Consensus       171 ~~~L~V~v~~a~~L~~~d---~~g~sDPyvkv~l~p~~~~~~k~kT~v~~~tlnP~wne~f~f~~~~~~~~~~L~v~v~d  247 (674)
T 3pfq_A          171 REVLIVVVRDAKNLVPMD---PNGLSDPYVKLKLIPDPKSESKQKTKTIKSSLNPEWNETFRFQLKESDKDRRLSVEIWD  247 (674)
T ss_dssp             SSEEEEEEEEEESCCCCS---TTSSCCEEEEEEEESCSSCCSCEECCCCSSCSSCEEEEEEEEECCSTTTTCEEEEEEEE
T ss_pred             cceeeeeeecccccCCCC---cccccCcccccccccCccccccccccccccccCCCccceeeeecccCCccceeeeEEee
Confidence            478999999999999765   5789999999999     4456899999999999999999999874  35679999999


Q ss_pred             CCCcCCCCCCCCCcccEEEEEEcccccCCCEEeeeEeeeec
Q 045058          668 NSQLGEKSNGNKDLKIGKVRIRISTLETGRIYTHSYPLLVL  708 (1005)
Q Consensus       668 ~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~  708 (1005)
                      +|.++      +|++||.+.++|+++..... ..||+|...
T Consensus       248 ~d~~~------~dd~iG~~~i~l~~l~~~~~-~~w~~Lls~  281 (674)
T 3pfq_A          248 WDLTS------RNDFMGSLSFGISELQKAGV-DGWFKLLSQ  281 (674)
T ss_dssp             CCSSS------CCEECCBCCCBTTHHHHCCE-EEEEECBCT
T ss_pred             ccccc------ccccccccccchhhhccCCc-ccceeeccc
Confidence            99877      89999999999999987664 899999743

>2zkm_X 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta-2; phospholipase C, phosphoinositide phospholipase, PLC-beta-2, calcium, coiled coil; 1.62A {Homo sapiens} SCOP: a.39.1.7 b.7.1.1 b.55.1.1 c.1.18.1 PDB: 2fju_B

Probab=99.03  E-value=7.2e-10  Score=134.41  Aligned_cols=112  Identities=20%  Similarity=0.351  Sum_probs=89.1

Q ss_pred             cceEEEEEEEEecCCCCCCCCCCCCCCCcEEEEEE-C---C--EEEEee-eccC-CCCceecc-EEEE-EEeCC-CceEE
Q 045058          594 SIGILELGILNAVGLHPMKTRDGRGTSDTYCVAKY-G---H--KWVRTR-TLVD-NLSPKYNE-QYTW-EVFDP-ATVLT  662 (1005)
Q Consensus       594 ~~g~l~v~i~~a~~L~~~~~~~~~~~~dpyv~~~~-g---~--~~~~T~-~~~~-t~nP~wne-~f~~-~v~~~-~~~l~  662 (1005)
                      ..|.|+|+|++|++|+.       +.+||||+|.+ |   .  +++||+ ++++ ++||+||| .|.| .|..+ -..|.
T Consensus       676 ~~~~L~V~Visa~~L~~-------~~~DPYV~V~l~g~p~d~~~k~kTk~vv~~n~~NPvWnEe~f~F~~v~~~el~~Lr  748 (799)
T 2zkm_X          676 VATTLSITVISGQFLSE-------RSVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKILMPELASLR  748 (799)
T ss_dssp             TCEEEEEEEEEEESCCS-------SCCCEEEEEEEECCTTSCCCCEECCCCSSSCCSSCBCCCCCEEEEEESSGGGCEEE
T ss_pred             eeeeEEEEEEeccccCc-------cCCCcEEEEEEEecCCCcccceeecccccCCCCCCeeecceEEEEEEccCCccEEE
Confidence            46899999999999983       46899999999 4   1  357999 8875 59999999 6999 78654 45899


Q ss_pred             EEEEeCCCcCCCCCCCCCcccEEEEEEcccccCCCEEeeeEeeeecCCCCCceeeEEEEEEEEe
Q 045058          663 VGVFDNSQLGEKSNGNKDLKIGKVRIRISTLETGRIYTHSYPLLVLHPTGVKKMGELHLAIRFS  726 (1005)
Q Consensus       663 i~v~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~G~i~l~~~~~  726 (1005)
                      |.|||++          +++||.+.|||+.|..|.   ++++|....+... ..+.|.+.++++
T Consensus       749 ~~V~D~d----------~d~iG~~~ipl~~L~~G~---r~v~L~~~~g~~~-~~~~Lfv~i~~~  798 (799)
T 2zkm_X          749 VAVMEEG----------NKFLGHRIIPINALNSGY---HHLCLHSESNMPL-TMPALFIFLEMK  798 (799)
T ss_dssp             EEEEETT----------TEEEEEEEEEGGGBCCEE---EEEEEECTTCCEE-EEEEEEEEEEEE
T ss_pred             EEEEEeC----------CCccceEeeehhhcCCCc---EEEeccCCCCCCC-CceEEEEEEEEE
Confidence            9999983          799999999999998874   6889975443222 347888877763

>1yrk_A NPKC-delta, protein kinase C, delta type; C2 domain, protein binding; HET: PTR; 1.70A {Homo sapiens} PDB: 1bdy_A

Probab=98.97  E-value=4.3e-09  Score=93.31  Aligned_cols=110  Identities=11%  Similarity=0.136  Sum_probs=85.1

Q ss_pred             cEEEEEEEEeecCCCCCCCCCCCcEEEEEECCe----Eeec-cccCCCCCCceeeEEEEEeccCccccceEEEEEEEeCC
Q 045058            4 LKLGVQVVGAHNLLPKDGKGSSSAFVELYFDGQ----RFRT-TIKENDLNPVWNESFYFNISDASKLHYLTLEAYIYNNI   78 (1005)
Q Consensus         4 ~~l~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~----~~~T-~v~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~   78 (1005)
                      ..|+|.+.++.--..+......||||.|.++..    +.+| ..+++|..|+|||+|.-.+.+..     .|.|.|++..
T Consensus         6 ~flRi~~~~~~~~~~~~~~~~lDPy~aV~vdE~~~~e~g~t~~~K~kT~~P~Wne~Fd~~V~~Gr-----~l~i~Vfh~a   80 (126)
T 1yrk_A            6 PFLRIAFNSYELGSLQAEDEANQPFCAVKMKEALSTERGKTLVQKKPTMYPEWKSTFDAHIYEGR-----VIQIVLMRAA   80 (126)
T ss_dssp             CEEEEEEEEEECSSCCCSSSSCCCEEEEEEEEEEEETTEEEEECCSCCBCCCTTCEEEEECCTTC-----EEEEEEEEET
T ss_pred             ccEEeeeccccccccCCccccCCceEEEEeeeeEEcccceeecccCCCCCcCccceEEeeeeCCE-----EEEEEEEcCC
Confidence            567888877663332223346899999999754    2365 78889999999999999997654     8999999852


Q ss_pred             CCCCCCcccEEEEEeCCcccC----CCCceeeeEecccCCCcceeeeEEEEEEEEe
Q 045058           79 GDTNSRSFLGKVCLTGNSFVP----LSDSVVLHYPLEKRGIFSHVRGELGLKVYIT  130 (1005)
Q Consensus        79 ~~~~~d~~lG~~~i~l~~l~~----~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~~  130 (1005)
                           .+|+..|+|++.+|..    .+...+.|++|++       +|+|++.+.+.
T Consensus        81 -----~~fvAn~tV~~edL~~~c~~~~g~~e~WvdLeP-------~Gkl~~~i~~~  124 (126)
T 1yrk_A           81 -----EEPVSEVTVGVSVLAERCKKNNGKAEFWLDLQP-------QAKVLMSVQYF  124 (126)
T ss_dssp             -----TEEEEEEEEEHHHHHHHHHTTTTEEEEEEECBS-------SCEEEEEEEEE
T ss_pred             -----CCeeeEEEEEHHHHHhhhccCCCceEEEEeccc-------CcEEEEEEEEe
Confidence                 2899999999999863    2456689999965       68999988775

>2enj_A NPKC-theta, protein kinase C theta type; beta-sandwich, phosphotyrosine binding, TCR, T-cell, diacylglycerol, phorbol ester, structural genomics; NMR {Homo sapiens}

Probab=98.97  E-value=3.3e-09  Score=95.21  Aligned_cols=111  Identities=8%  Similarity=0.108  Sum_probs=86.9

Q ss_pred             cEEEEEEEEeecCCCCC-CCCCCCcEEEEEECCe----Eeec-cccCCCCCCceeeEEEEEeccCccccceEEEEEEEeC
Q 045058            4 LKLGVQVVGAHNLLPKD-GKGSSSAFVELYFDGQ----RFRT-TIKENDLNPVWNESFYFNISDASKLHYLTLEAYIYNN   77 (1005)
Q Consensus         4 ~~l~V~v~~a~~L~~~d-~~g~~dpyv~v~~~~~----~~~T-~v~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~   77 (1005)
                      ..|+|.+.+..--..+. ..-..||||.|.++..    +.+| ..+++|..|+|||+|.-.+.+..     .|.|.|++.
T Consensus        10 ~flRi~l~~~~~~~~~~~~~~~lDPY~aV~VdE~~~te~gqtl~~KkkT~~P~Wne~Fd~~V~~Gr-----~l~i~Vfh~   84 (138)
T 2enj_A           10 PFLRIGLSNFDCGSCQSCQGEAVNPYCAVLVKEYVESENGQMYIQKKPTMYPPWDSTFDAHINKGR-----VMQIIVKGK   84 (138)
T ss_dssp             CCEEEEEEEEECCCCCCSCCCCCCCEEEEEEEEEEEETTEEEEEEEEEEECCCSSSEEEECCCSSC-----EEEEEEECS
T ss_pred             cceEEEeeccccCCCCCcccccCCceEEEEeeeeeeccCceeecccCCCCCccccceEeeeEECCe-----EEEEEEEcC
Confidence            56888887777544332 2336899999999754    3777 78888999999999999987654     899999975


Q ss_pred             CCCCCCCcccEEEEEeCCcccCC----CCceeeeEecccCCCcceeeeEEEEEEEEec
Q 045058           78 IGDTNSRSFLGKVCLTGNSFVPL----SDSVVLHYPLEKRGIFSHVRGELGLKVYITD  131 (1005)
Q Consensus        78 ~~~~~~d~~lG~~~i~l~~l~~~----~~~~~~w~~L~~~~~~~~~~G~i~l~~~~~~  131 (1005)
                      .     .+|+..|+|++.+|...    +...+.|++|++       +|+|++.+.+.-
T Consensus        85 a-----~~fVAn~tV~~edL~~~ck~~~g~~e~WvdLeP-------~Gkl~v~i~~~~  130 (138)
T 2enj_A           85 N-----VDLISETTVELYSLAERCRKNNGKTEIWLELKP-------QGRMLMNARYFL  130 (138)
T ss_dssp             S-----CSCCEEEEEESHHHHHHHHHTTTCEEEEEECBS-------SCEEEEEEEECC
T ss_pred             C-----CCeeeEEEEEHHHHHhhhccCCCceEEEEeccc-------CcEEEEEEEEEE
Confidence            2     28999999999998632    456689999965       689999998865

>1yrk_A NPKC-delta, protein kinase C, delta type; C2 domain, protein binding; HET: PTR; 1.70A {Homo sapiens} PDB: 1bdy_A

Probab=98.66  E-value=1.3e-07  Score=83.86  Aligned_cols=114  Identities=18%  Similarity=0.237  Sum_probs=84.6

Q ss_pred             eEEEEEEEEeecCCCCCCCCCCCcEEEEEECCee----eee-eeecCCCCCeeeeEEEEeecCCCCcEEEEEEEeCCCCC
Q 045058          270 YFLYVRVVKARELPAMDLTGSIDPFVEVKIGNYK----GIT-KHYEKNQNPQWHQVFAFSRDRMQASVLEVVIKDKDLVK  344 (1005)
Q Consensus       270 ~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~~~~----~kT-~~~~~~~nP~wne~f~f~~~~~~~~~l~v~V~d~~~~~  344 (1005)
                      ..|+|.+.+..--.........||||.|.+....    .+| .+.++|..|.||++|.-.+.+  ...|.|.|++...  
T Consensus         6 ~flRi~~~~~~~~~~~~~~~~lDPy~aV~vdE~~~~e~g~t~~~K~kT~~P~Wne~Fd~~V~~--Gr~l~i~Vfh~a~--   81 (126)
T 1yrk_A            6 PFLRIAFNSYELGSLQAEDEANQPFCAVKMKEALSTERGKTLVQKKPTMYPEWKSTFDAHIYE--GRVIQIVLMRAAE--   81 (126)
T ss_dssp             CEEEEEEEEEECSSCCCSSSSCCCEEEEEEEEEEEETTEEEEECCSCCBCCCTTCEEEEECCT--TCEEEEEEEEETT--
T ss_pred             ccEEeeeccccccccCCccccCCceEEEEeeeeEEcccceeecccCCCCCcCccceEEeeeeC--CEEEEEEEEcCCC--
Confidence            4688888776542222233468999999997633    255 667789999999999999887  4579999997654  


Q ss_pred             CceeEEEEEEceecCCCCCCCCCCCCeEEEeecCCCCccceEEEEEEEEe
Q 045058          345 DDFVGIVRFDINEVPLRVPPDSPLAPEWYRLEDKKGEKIKGELMLAVWIG  394 (1005)
Q Consensus       345 d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~G~i~l~~~~~  394 (1005)
                       +|++.|++.+.+|..+-........-|+.|+..      |+|++.+.+.
T Consensus        82 -~fvAn~tV~~edL~~~c~~~~g~~e~WvdLeP~------Gkl~~~i~~~  124 (126)
T 1yrk_A           82 -EPVSEVTVGVSVLAERCKKNNGKAEFWLDLQPQ------AKVLMSVQYF  124 (126)
T ss_dssp             -EEEEEEEEEHHHHHHHHHTTTTEEEEEEECBSS------CEEEEEEEEE
T ss_pred             -CeeeEEEEEHHHHHhhhccCCCceEEEEecccC------cEEEEEEEEe
Confidence             999999999999984310011346789999874      8899988654

>2enj_A NPKC-theta, protein kinase C theta type; beta-sandwich, phosphotyrosine binding, TCR, T-cell, diacylglycerol, phorbol ester, structural genomics; NMR {Homo sapiens}

Probab=98.61  E-value=3.5e-07  Score=82.21  Aligned_cols=110  Identities=12%  Similarity=0.116  Sum_probs=83.9

Q ss_pred             ceEEEEEEEEecCCCCCCCCCCCCCCCcEEEEEECCEE----EEe-eeccCCCCceeccEEEEEEeCCCceEEEEEEeCC
Q 045058          595 IGILELGILNAVGLHPMKTRDGRGTSDTYCVAKYGHKW----VRT-RTLVDNLSPKYNEQYTWEVFDPATVLTVGVFDNS  669 (1005)
Q Consensus       595 ~g~l~v~i~~a~~L~~~~~~~~~~~~dpyv~~~~g~~~----~~T-~~~~~t~nP~wne~f~~~v~~~~~~l~i~v~d~~  669 (1005)
                      .+.|+|.+.++.-.+-+.  ......||||.|.+....    -+| .+.++|..|+||+.|.-.|.+ ...|+|.||+. 
T Consensus         9 ~~flRi~l~~~~~~~~~~--~~~~~lDPY~aV~VdE~~~te~gqtl~~KkkT~~P~Wne~Fd~~V~~-Gr~l~i~Vfh~-   84 (138)
T 2enj_A            9 SPFLRIGLSNFDCGSCQS--CQGEAVNPYCAVLVKEYVESENGQMYIQKKPTMYPPWDSTFDAHINK-GRVMQIIVKGK-   84 (138)
T ss_dssp             CCCEEEEEEEEECCCCCC--SCCCCCCCEEEEEEEEEEEETTEEEEEEEEEEECCCSSSEEEECCCS-SCEEEEEEECS-
T ss_pred             CcceEEEeeccccCCCCC--cccccCCceEEEEeeeeeeccCceeecccCCCCCccccceEeeeEEC-CeEEEEEEEcC-
Confidence            367888887776433210  013357999999986542    567 677789999999999888766 55999999965 


Q ss_pred             CcCCCCCCCCCcccEEEEEEccccc-----CCCEEeeeEeeeecCCCCCceeeEEEEEEEE
Q 045058          670 QLGEKSNGNKDLKIGKVRIRISTLE-----TGRIYTHSYPLLVLHPTGVKKMGELHLAIRF  725 (1005)
Q Consensus       670 ~~~~~~~~~~d~~lG~~~i~l~~l~-----~~~~~~~~~~L~~~~~~~~~~~G~i~l~~~~  725 (1005)
                               ..+||..+.|++.+|.     .+...+.|..|.        ..|+|++.+++
T Consensus        85 ---------a~~fVAn~tV~~edL~~~ck~~~g~~e~WvdLe--------P~Gkl~v~i~~  128 (138)
T 2enj_A           85 ---------NVDLISETTVELYSLAERCRKNNGKTEIWLELK--------PQGRMLMNARY  128 (138)
T ss_dssp             ---------SCSCCEEEEEESHHHHHHHHHTTTCEEEEEECB--------SSCEEEEEEEE
T ss_pred             ---------CCCeeeEEEEEHHHHHhhhccCCCceEEEEecc--------cCcEEEEEEEE
Confidence                     3499999999999987     345678999995        35999999997

>3l4c_A Dedicator of cytokinesis protein 1; DOCK180, DOCK1, phosphoinositide specificity, guanine exchan factor, RHO GTPase, cytoskeleton, cell migration; 2.37A {Homo sapiens}

Probab=88.74  E-value=6.1  Score=39.04  Aligned_cols=72  Identities=14%  Similarity=0.145  Sum_probs=48.5

Q ss_pred             cEEEEEEEEeecCCCCCCCCCCCcEEEEEEC---------------C----eEeeccccCCCCCCceeeEEEEEeccCcc
Q 045058            4 LKLGVQVVGAHNLLPKDGKGSSSAFVELYFD---------------G----QRFRTTIKENDLNPVWNESFYFNISDASK   64 (1005)
Q Consensus         4 ~~l~V~v~~a~~L~~~d~~g~~dpyv~v~~~---------------~----~~~~T~v~~~t~nP~Wne~f~f~v~~~~~   64 (1005)
                      ..|.|++.++. +........-|--|.|++.               +    ..++|.|.+.+.+|.|+|++.+.++-.. 
T Consensus        27 NdLYVtl~~g~-F~~~~k~~aRNIeV~vevr~~~G~~i~~~I~~~sg~~~~se~~S~V~YHnk~P~w~EtIKi~LP~~~-  104 (220)
T 3l4c_A           27 NDIYVTLVQGD-FDKGSKTTAKNVEVTVSVYDEDGKRLEHVIFPGAGDEAISEYKSVIYYQVKQPRWFETVKVAIPIED-  104 (220)
T ss_dssp             EEEEEEEEEEE-CCCSSSSSCCCEEEEEEEEETTSCBCCSCEECTTCCSCBSCEECCCCTTCSSCCCCEEEEEEECTTS-
T ss_pred             ccEEEEeeEeE-ECCCCCCCcceEEEEEEEEcCCCCCcccCEEcCCCCCCceeEEEEEEEcCCCCCceEeEEEeeChhh-
Confidence            46777888775 3221112223545555540               1    2478889999999999999999996543 


Q ss_pred             ccceEEEEEEEeC
Q 045058           65 LHYLTLEAYIYNN   77 (1005)
Q Consensus        65 ~~~~~l~v~V~d~   77 (1005)
                      .....|.|++++.
T Consensus       105 ~~~~HLlFtFrH~  117 (220)
T 3l4c_A          105 VNRSHLRFTFRHR  117 (220)
T ss_dssp             STTEEEEEEEEEC
T ss_pred             cCCeEEEEEEEEe
Confidence            5667899999886

>2yrb_A Protein fantom; beta sandwich, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.7.1.1

Probab=87.17  E-value=1.2  Score=41.38  Aligned_cols=123  Identities=9%  Similarity=0.088  Sum_probs=79.4

Q ss_pred             ceeEEEEEEEEeecCCCC-CCCCCCCcEEEEEE--CCee-eeeeeecCCCCCeeeeEEEEeecCC-------CCcEEEEE
Q 045058          268 RMYFLYVRVVKARELPAM-DLTGSIDPFVEVKI--GNYK-GITKHYEKNQNPQWHQVFAFSRDRM-------QASVLEVV  336 (1005)
Q Consensus       268 ~~~~L~V~v~~a~~L~~~-~~~g~~dPyv~v~~--~~~~-~kT~~~~~~~nP~wne~f~f~~~~~-------~~~~l~v~  336 (1005)
                      ..+.+.|+|.++.--+.. ...+..+|..-+.+  -... ..|.+ ....+|.+|-+-.|.+...       ....+.++
T Consensus        16 gEnlfEihi~~~~~~~~~l~~~~d~~p~tF~t~dF~dfEtq~Tpv-~~G~~p~y~fts~Y~V~~d~~fl~yL~~~~l~lE   94 (156)
T 2yrb_A           16 GENLFEIHINKVTFSSEVLQASGDKEPVTFCTYAFYDFELQTTPV-VRGLHPEYNFTSQYLVHVNDLFLQYIQKNTITLE   94 (156)
T ss_dssp             SCEEEEEEEEEECCCHHHHHHHCSSCCEEEEEECSTTCCCEECCC-EESSSCCCCEEEEEEECCSHHHHHHHHHCCEEEE
T ss_pred             CCcEEEEEEeEEEEcHHHHhhccccCCcEEEEEEEeceEeeeccc-ccCCCCCcceEEEEEEEeCHHHHHHHhcCCEEEE
Confidence            346788999988632111 01223466555544  4444 44554 4589999999888876421       23478888


Q ss_pred             EEeCCCCCCceeEEEEEEceecCCCCCCCCCCCCeEEEeecCCCC-ccceEEEEEEEEec
Q 045058          337 IKDKDLVKDDFVGIVRFDINEVPLRVPPDSPLAPEWYRLEDKKGE-KIKGELMLAVWIGT  395 (1005)
Q Consensus       337 V~d~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~-~~~G~i~l~~~~~~  395 (1005)
                      ++......-..||.+.|+|.++....    .....-.+|....+. ...|.|.+.+.+..
T Consensus        95 Lhqa~g~~~~tla~~~I~l~~lLe~~----~~i~g~~~L~g~~g~~~~~G~LeywiRL~~  150 (156)
T 2yrb_A           95 VHQAYSTEYETIAACQLKFHEILEKS----GRIFCTASLIGTKGDIPNFGTVEYWFRLRV  150 (156)
T ss_dssp             EEEECSSCEEEEEEEEECCSHHHHCC----SCEEEEEEECBSSSCCTTSEEEEEEEEEEE
T ss_pred             EEEeeCCCceEEEEEEEEhHHhhCcC----CceEEEEEEEcCCCCcceEEEEEEEEEEec
Confidence            88875445679999999999998652    123334577776664 36799888877653

>2wxf_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit delta isoform; transferase, phosphoprotein, isoform-specific inhibitors; HET: 039; 1.90A {Mus musculus} PDB: 2wxg_A* 2wxh_A* 2wxi_A* 2wxj_A* 2wxk_A* 2wxl_A* 2wxm_A* 2wxn_A* 2wxo_A* 2wxp_A* 2wxq_A* 2wxr_A 2x38_A*

Probab=84.89  E-value=3  Score=51.07  Aligned_cols=72  Identities=13%  Similarity=0.207  Sum_probs=51.8

Q ss_pred             CcEEEEEEEEeecCCCCCCCCCCCcEEEEEE--CCe----EeeccccCCCCCCceeeEEEEEeccCccccceEEEEEEEe
Q 045058            3 NLKLGVQVVGAHNLLPKDGKGSSSAFVELYF--DGQ----RFRTTIKENDLNPVWNESFYFNISDASKLHYLTLEAYIYN   76 (1005)
Q Consensus         3 ~~~l~V~v~~a~~L~~~d~~g~~dpyv~v~~--~~~----~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d   76 (1005)
                      ...+.|+|.++.++...   ...+-||.+.+  |++    ...|+.+.-..+|.|||.+.|++.-.+-.....|.|.||+
T Consensus       216 ~~~f~i~i~~~~~~~~~---~~~~~~V~~~l~~g~~~l~~~~~T~~~~~~~~~~Wne~l~f~i~i~dLPr~a~L~~ti~~  292 (940)
T 2wxf_A          216 EQPFSIELIEGRKVNAD---ERMKLVVQAGLFHGNEMLCKTVSSSEVNVCSEPVWKQRLEFDISVCDLPRMARLCFALYA  292 (940)
T ss_dssp             CSEEEEEEEEEECCCC------CEEEEEEEEEETTEESSCCEECCCEESCSSCEEEEEEEEEEEGGGCCTTCEEEEEEEE
T ss_pred             CCceEEEEEEecccCCC---CCceEEEEEEEEECCEEccCceecccccCCCCcccceEEEcccccccCCcccEEEEEEEE
Confidence            36799999999998753   34677877665  554    3455555557789999999999865444456789999998


Q ss_pred             C
Q 045058           77 N   77 (1005)
Q Consensus        77 ~   77 (1005)
                      .
T Consensus       293 ~  293 (940)
T 2wxf_A          293 V  293 (940)
T ss_dssp             E
T ss_pred             e
Confidence            5

>2yrb_A Protein fantom; beta sandwich, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.7.1.1

Probab=84.11  E-value=2.4  Score=39.50  Aligned_cols=124  Identities=10%  Similarity=0.021  Sum_probs=81.9

Q ss_pred             cEEEEEEEEeecCCCCC-C-CCCCCc--EEEEEECCe-EeeccccCCCCCCceeeEEEEEeccCcc----ccceEEEEEE
Q 045058            4 LKLGVQVVGAHNLLPKD-G-KGSSSA--FVELYFDGQ-RFRTTIKENDLNPVWNESFYFNISDASK----LHYLTLEAYI   74 (1005)
Q Consensus         4 ~~l~V~v~~a~~L~~~d-~-~g~~dp--yv~v~~~~~-~~~T~v~~~t~nP~Wne~f~f~v~~~~~----~~~~~l~v~V   74 (1005)
                      ..+.|.|.++. +.+.- . .+..+|  ||.+.+-.. .+.|.+.. +.+|.+|-+-.|.|.-.+.    ++...|.+++
T Consensus        18 nlfEihi~~~~-~~~~~l~~~~d~~p~tF~t~dF~dfEtq~Tpv~~-G~~p~y~fts~Y~V~~d~~fl~yL~~~~l~lEL   95 (156)
T 2yrb_A           18 NLFEIHINKVT-FSSEVLQASGDKEPVTFCTYAFYDFELQTTPVVR-GLHPEYNFTSQYLVHVNDLFLQYIQKNTITLEV   95 (156)
T ss_dssp             EEEEEEEEEEC-CCHHHHHHHCSSCCEEEEEECSTTCCCEECCCEE-SSSCCCCEEEEEEECCSHHHHHHHHHCCEEEEE
T ss_pred             cEEEEEEeEEE-EcHHHHhhccccCCcEEEEEEEeceEeeeccccc-CCCCCcceEEEEEEEeCHHHHHHHhcCCEEEEE
Confidence            57888888887 32100 0 122456  455555454 56666664 8999999999998843222    3556788888


Q ss_pred             EeCCCCCCCCcccEEEEEeCCcccCCCCceeeeEecccCCCcceeeeEEEEEEEEec
Q 045058           75 YNNIGDTNSRSFLGKVCLTGNSFVPLSDSVVLHYPLEKRGIFSHVRGELGLKVYITD  131 (1005)
Q Consensus        75 ~d~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~~~  131 (1005)
                      ...  ....-+.||.+.|++.++...........+|....+....-|.|.+.+.+..
T Consensus        96 hqa--~g~~~~tla~~~I~l~~lLe~~~~i~g~~~L~g~~g~~~~~G~LeywiRL~~  150 (156)
T 2yrb_A           96 HQA--YSTEYETIAACQLKFHEILEKSGRIFCTASLIGTKGDIPNFGTVEYWFRLRV  150 (156)
T ss_dssp             EEE--CSSCEEEEEEEEECCSHHHHCCSCEEEEEEECBSSSCCTTSEEEEEEEEEEE
T ss_pred             EEe--eCCCceEEEEEEEEhHHhhCcCCceEEEEEEEcCCCCcceEEEEEEEEEEec
Confidence            875  2335679999999999997665544344677765442235699998888766

>3hhm_A Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha isoform; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_A 2rd0_A 4a55_A* 2enq_A

Probab=81.54  E-value=6.4  Score=48.59  Aligned_cols=108  Identities=18%  Similarity=0.168  Sum_probs=69.2

Q ss_pred             CcEEEEEEEEeecCCCCCCCCCCCcEEEEEE--CCe----EeeccccCCCCCCceeeEEEEEeccCccccceEEEEEEEe
Q 045058            3 NLKLGVQVVGAHNLLPKDGKGSSSAFVELYF--DGQ----RFRTTIKENDLNPVWNESFYFNISDASKLHYLTLEAYIYN   76 (1005)
Q Consensus         3 ~~~l~V~v~~a~~L~~~d~~g~~dpyv~v~~--~~~----~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d   76 (1005)
                      +..+.|+|+++.++.. +.....+-||.+.+  |++    ..+|+.+ ...+|.|||...|++.-.+-.....|-|.||+
T Consensus       354 ~~~f~v~i~~~~~~n~-~~~~~~~~~V~~~l~hG~~~L~~~~~T~~~-~~~~~~Wne~l~f~i~i~dLPr~arL~~tl~~  431 (1091)
T 3hhm_A          354 NSALRIKILCATYVNV-NIRDIDKIYVRTGIYHGGEPLCDNVNTQRV-PCSNPRWNEWLNYDIYIPDLPRAARLCLSICS  431 (1091)
T ss_dssp             CSEEEEEEEEESCCCC-CCSSCCCCCEEEEEESSSCSSCCEECCCCC-CTTSCEEEEEEEEEEEGGGCCTTCEEEEEECC
T ss_pred             CCCEEEEEEEecCCCC-CccccceEEEEEEEEECCEEccCceecccc-CCCCCCCCeeEEecCccccCChhcEEEEEEEE
Confidence            3678999999998864 22334677888776  443    3445433 35678899999999865444556789999998


Q ss_pred             CCCCCC---CCcccEEEEEeCCcccCCCCceeeeEecccCCCcceeeeEEEEEEEE
Q 045058           77 NIGDTN---SRSFLGKVCLTGNSFVPLSDSVVLHYPLEKRGIFSHVRGELGLKVYI  129 (1005)
Q Consensus        77 ~~~~~~---~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~  129 (1005)
                      .....+   ....||-+.++|-+.                .+. -.+|...+.++-
T Consensus       432 ~~~~~~~~~~~~~lg~~n~~lfd~----------------~~~-L~~G~~~L~lW~  470 (1091)
T 3hhm_A          432 VKGRKGAKEEHCPLAWGNINLFDY----------------TDT-LVSGKMALNLWP  470 (1091)
T ss_dssp             CCCCC-------CCEEEEEESBCT----------------TCB-BCCEEEEEECEE
T ss_pred             ecCccCcccccceeEEeeeeeEcc----------------CCe-EEcCCeEEEeec
Confidence            633111   234677766664432                111 236899999873

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	1005
d2cjta1	128	b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus no	4e-21
d2cjta1	128	b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus no	2e-14
d2cjta1	128	b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus no	5e-07
d2cjta1	128	b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus no	6e-06
d1rlwa_	126	b.7.1.1 (A:) Domain from cytosolic phospholipase A	1e-20
d1rlwa_	126	b.7.1.1 (A:) Domain from cytosolic phospholipase A	2e-11
d1rlwa_	126	b.7.1.1 (A:) Domain from cytosolic phospholipase A	3e-11
d1rlwa_	126	b.7.1.1 (A:) Domain from cytosolic phospholipase A	2e-08
d2ep6a1	126	b.7.1.1 (A:92-217) Multiple C2 and transmembrane d	3e-19
d2ep6a1	126	b.7.1.1 (A:92-217) Multiple C2 and transmembrane d	2e-15
d2ep6a1	126	b.7.1.1 (A:92-217) Multiple C2 and transmembrane d	4e-11
d2ep6a1	126	b.7.1.1 (A:92-217) Multiple C2 and transmembrane d	1e-10
d1a25a_	132	b.7.1.2 (A:) C2 domain from protein kinase c (beta	3e-18
d1a25a_	132	b.7.1.2 (A:) C2 domain from protein kinase c (beta	1e-12
d1a25a_	132	b.7.1.2 (A:) C2 domain from protein kinase c (beta	7e-12
d1a25a_	132	b.7.1.2 (A:) C2 domain from protein kinase c (beta	3e-11
d1wfja_	136	b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cr	9e-18
d1wfja_	136	b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cr	4e-16
d1wfja_	136	b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cr	3e-14
d1wfja_	136	b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cr	3e-11
d2bwqa1	125	b.7.1.2 (A:729-853) Regulating synaptic membrane e	3e-17
d2bwqa1	125	b.7.1.2 (A:729-853) Regulating synaptic membrane e	4e-15
d2bwqa1	125	b.7.1.2 (A:729-853) Regulating synaptic membrane e	1e-12
d1w15a_	138	b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegi	3e-16
d1w15a_	138	b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegi	1e-11
d1w15a_	138	b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegi	1e-11
d1w15a_	138	b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegi	2e-05
d1rh8a_	142	b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [Tax	3e-16
d1rh8a_	142	b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [Tax	1e-11
d1rh8a_	142	b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [Tax	3e-10
d1rh8a_	142	b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [Tax	1e-06
d1rsya_	143	b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu	1e-15
d1rsya_	143	b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu	9e-11
d1rsya_	143	b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu	1e-10
d1rsya_	143	b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu	2e-09
d2nq3a1	133	b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itc	1e-15
d2nq3a1	133	b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itc	6e-13
d2nq3a1	133	b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itc	7e-09
d1uowa_	157	b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu	3e-15
d1uowa_	157	b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu	6e-11
d1uowa_	157	b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu	4e-07
d2cm5a1	137	b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (	5e-14
d2cm5a1	137	b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (	9e-10
d2cm5a1	137	b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (	2e-09
d2cm5a1	137	b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (	0.001
d1dqva2	145	b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus	1e-13
d1dqva2	145	b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus	2e-09
d1dqva2	145	b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus	1e-06
d1dqva1	130	b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus	2e-12
d1dqva1	130	b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus	9e-10
d1dqva1	130	b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus	8e-07
d1dqva1	130	b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus	4e-04
d1ugka_	138	b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens	5e-12
d1ugka_	138	b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens	8e-08
d1ugka_	138	b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens	3e-07
d1ugka_	138	b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens	2e-06
d1gmia_	136	b.7.1.1 (A:) Domain from protein kinase C epsilon	6e-11
d1gmia_	136	b.7.1.1 (A:) Domain from protein kinase C epsilon	3e-10
d1gmia_	136	b.7.1.1 (A:) Domain from protein kinase C epsilon	8e-09
d1gmia_	136	b.7.1.1 (A:) Domain from protein kinase C epsilon	4e-05
d1bdya_	123	b.7.1.1 (A:) Domain from protein kinase C delta {R	2e-10
d1bdya_	123	b.7.1.1 (A:) Domain from protein kinase C delta {R	1e-06
d1bdya_	123	b.7.1.1 (A:) Domain from protein kinase C delta {R	2e-05
d1qasa2	131	b.7.1.1 (A:626-756) PI-specific phospholipase C is	2e-10
d1qasa2	131	b.7.1.1 (A:626-756) PI-specific phospholipase C is	3e-10
d1qasa2	131	b.7.1.1 (A:626-756) PI-specific phospholipase C is	2e-09
d1qasa2	131	b.7.1.1 (A:626-756) PI-specific phospholipase C is	6e-04
d1wfma_	138	b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapie	1e-09
d1wfma_	138	b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapie	7e-05
d2zkmx2	122	b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human	8e-07

>d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 128

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Unc-13 homolog A
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 87.9 bits (217), Expect = 4e-21
 Identities = 30/119 (25%), Positives = 48/119 (40%), Gaps = 9/119 (7%)

Query: 269 MYFLYVRVVKARELPAMDLTGSIDPFVEVKIGNYKGITKHYEKNQNPQWHQVFAFSRDRM 328
           M  L V V KA+   A +     + +V +K+ N K  T    +   P W Q F F  +R+
Sbjct: 1   MSLLCVGVKKAKFDGAQE---KFNTYVTLKVQNVKSTTIAV-RGSQPSWEQDFMFEINRL 56

Query: 329 QASVLEVVIKDKDLVKDDFVGIVRFDINEVPLRVPPDSPLAPEWYRLEDKKGEKIKGEL 387
              +  V + +K L+ D  VG V   +  +      +     EW  L D +      E+
Sbjct: 57  DLGLT-VEVWNKGLIWDTMVGTVWIPLRTIRQ---SNEEGPGEWLTL-DSQAIMADSEI 110

>d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 128

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Unc-13 homolog A
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 68.6 bits (167), Expect = 2e-14
 Identities = 29/133 (21%), Positives = 47/133 (35%), Gaps = 11/133 (8%)

Query: 435 YVRVNVVEAQDLVPTEKNHFPDVYVKAQIGNQVLKTKICQARTLSAVWNEDLLFVAAEPF 494
            + V V +A+     EK    + YV  ++ N    T     R     W +D         
Sbjct: 3   LLCVGVKKAKFDGAQEKF---NTYVTLKVQNVKSTTIAV--RGSQPSWEQD-FMFEINRL 56

Query: 495 EDHLVLTVEDRVGPGKDEIIGRVIIPLSAIEKRADERIIHSRWFNLEKPVAVDVDQLK-- 552
           +  L + V ++ G   D ++G V IPL  I  R         W  L+    +   ++   
Sbjct: 57  DLGLTVEVWNK-GLIWDTMVGTVWIPLRTI--RQSNEEGPGEWLTLDSQAIMADSEICGT 113

Query: 553 KEKFSSRIHLRVC 565
           K+    RI L   
Sbjct: 114 KDPTFHRILLDAH 126

>d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 128

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Unc-13 homolog A
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 47.4 bits (112), Expect = 5e-07
 Identities = 21/127 (16%), Positives = 39/127 (30%), Gaps = 19/127 (14%)

Query: 595 IGILELGILNAVGLHPMKTRDGRGTSDTYCVAKYGHKWVRTRTLVDNLSPKYNEQYTWEV 654
           + +L +G+  A               +TY   K  +    T   V    P + + + +E+
Sbjct: 1   MSLLCVGVKKAKFDGAQ------EKFNTYVTLKVQNVKSTTIA-VRGSQPSWEQDFMFEI 53

Query: 655 FDPATVLTVGVFDNSQLGEKSNGNKDLKIGKVRIRISTL--ETGRIYTHSYPLLVLHPTG 712
                 LTV V++            D  +G V I + T+                L    
Sbjct: 54  NRLDLGLTVEVWNK-------GLIWDTMVGTVWIPLRTIRQSNEEGPGEWLT---LDSQA 103

Query: 713 VKKMGEL 719
           +    E+
Sbjct: 104 IMADSEI 110

>d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 128

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Unc-13 homolog A
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 44.4 bits (104), Expect = 6e-06
 Identities = 14/87 (16%), Positives = 26/87 (29%), Gaps = 10/87 (11%)

Query: 6  LGVQVVGAHNLLPKDGKGSSSAFVELYFDGQRFRTTIKENDLNPVWNESFYFNISDASKL 65
          L V V  A     ++     + +V L     +  T        P W + F F I+     
Sbjct: 4  LCVGVKKAKFDGAQE---KFNTYVTLKVQNVKSTTIAVRG-SQPSWEQDFMFEINRLDLG 59

Query: 66 HYLTLEAYIYNNIGDTNSRSFLGKVCL 92
            + +              + +G V +
Sbjct: 60 LTVEVWNK------GLIWDTMVGTVWI 80

>d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from cytosolic phospholipase A2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 86.7 bits (214), Expect = 1e-20
 Identities = 27/122 (22%), Positives = 56/122 (45%), Gaps = 11/122 (9%)

Query: 272 LYVRVVKARELP---AMDLTGSIDPFVEVKIG---NYKGITKHYEKNQNPQWHQVFAFSR 325
             V V++A ++      D+  + DP+VE+ I    + +  T+H+  + NP W++ F F  
Sbjct: 5   FTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFIL 64

Query: 326 DRMQASVLEVVIKDKDLVKDDFVGIVRFDINEVPLRVPPDSPLAPEWYRLEDKKGEKIKG 385
           D  Q +VLE+ + D + V D+ +G   F ++ + +    +       +         ++ 
Sbjct: 65  DPNQENVLEITLMDANYVMDETLGTATFTVSSMKVGEKKE-----VPFIFNQVTEMVLEM 119

Query: 386 EL 387
            L
Sbjct: 120 SL 121

>d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from cytosolic phospholipase A2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.1 bits (145), Expect = 2e-11
 Identities = 26/128 (20%), Positives = 46/128 (35%), Gaps = 11/128 (8%)

Query: 436 VRVNVVEAQDLVPTEK---NHFPDVYVKAQIGNQVLKTKICQA--RTLSAVWNEDLLFVA 490
             V V+ A  +           PD YV+  I       K  +     ++ VWNE   F+ 
Sbjct: 5   FTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFIL 64

Query: 491 AEPFEDHLVLTVEDRVGPGKDEIIGRVIIPLSAIEKRADERIIHSRWFNLEKPVAVDVDQ 550
               E+ L +T+ D      DE +G     +S+++            F   +   + + +
Sbjct: 65  DPNQENVLEITLMDA-NYVMDETLGTATFTVSSMKVGE----KKEVPFIFNQVTEMVL-E 118

Query: 551 LKKEKFSS 558
           +  E  SS
Sbjct: 119 MSLEVASS 126

>d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from cytosolic phospholipase A2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.7 bits (144), Expect = 3e-11
 Identities = 23/140 (16%), Positives = 46/140 (32%), Gaps = 18/140 (12%)

Query: 594 SIGILELGILNAVGLHPMKTRDGRGTSDTYCVAKYG---HKWVRTRTLVDNLSPKYNEQY 650
           S     + +L A  +      D   T D Y             RTR   ++++P +NE +
Sbjct: 1   SSHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETF 60

Query: 651 TWEVFDPAT-VLTVGVFDNSQLGEKSNGNKDLKIGKVRIRISTLETGRIYTHSYPLLVLH 709
            + +      VL + + D        N   D  +G     +S+++ G      +      
Sbjct: 61  EFILDPNQENVLEITLMDA-------NYVMDETLGTATFTVSSMKVGEKKEVPFIF---- 109

Query: 710 PTGVKKMGELHLAIRFSCTS 729
                    L +++    +S
Sbjct: 110 --NQVTEMVLEMSLEV-ASS 126

>d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from cytosolic phospholipase A2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.6 bits (123), Expect = 2e-08
 Identities = 29/126 (23%), Positives = 51/126 (40%), Gaps = 13/126 (10%)

Query: 5   KLGVQVVGAHNLLP---KDGKGSSSAFVELYFDG---QRFRTTIKENDLNPVWNESFYFN 58
           K  V V+ A  +      D   +   +VEL+       R RT    ND+NPVWNE+F F 
Sbjct: 4   KFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFI 63

Query: 59  ISDASKLHYLTLEAYIYNNIGDTNSRSFLGKVCLTGNSFVPLSDSVVLHYPLEKRG-IFS 117
           +    + + L +     N + D      LG    T +S + + +   + +   +   +  
Sbjct: 64  LDPNQE-NVLEITLMDANYVMDE----TLGTATFTVSS-MKVGEKKEVPFIFNQVTEMVL 117

Query: 118 HVRGEL 123
            +  E+
Sbjct: 118 EMSLEV 123

>d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 82.5 bits (203), Expect = 3e-19
 Identities = 37/127 (29%), Positives = 60/127 (47%), Gaps = 8/127 (6%)

Query: 266 VERMYFLYVRVVKARELPAMDLTGSIDPFVEVKIGNYKGITKHYEKNQNPQWHQVFAFSR 325
           V+ +  L V+V+KA +L A D +G  DPF  +++GN +  T    KN NP+W++VF F  
Sbjct: 2   VKDVGILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFPI 61

Query: 326 DRMQASVLEVVIKDKDLVKDDFVGIVRFDINEVPLRVPPDSPLAPEWYRLEDKKGE-KIK 384
             +   +   V  +      DF+G V   +  +           P  Y L++K  E   K
Sbjct: 62  KDIHDVLEVTVFDEDGDKPPDFLGKVAIPLLSIR-------DGQPNCYVLKNKDLEQAFK 114

Query: 385 GELMLAV 391
           G + L +
Sbjct: 115 GVIYLEM 121

>d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.4 bits (174), Expect = 2e-15
 Identities = 36/131 (27%), Positives = 64/131 (48%), Gaps = 12/131 (9%)

Query: 595 IGILELGILNAVGLHPMKTRDGRGTSDTYCVAKYGHKWVRTRTLVDNLSPKYNEQYTWEV 654
           +GIL++ +L A  L      D  G SD +C+ + G+  ++T T+  NL+P++N+ +T+ +
Sbjct: 5   VGILQVKVLKAADLLAA---DFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFPI 61

Query: 655 FDPATVLTVGVFDNSQLGEKSNGNKDLKIGKVRIRISTLETGRIYTHSYPLLVLHPTGVK 714
            D   VL V VFD      +        +GKV I + ++  G+   + Y L         
Sbjct: 62  KDIHDVLEVTVFD------EDGDKPPDFLGKVAIPLLSIRDGQ--PNCYVLKNKDLEQAF 113

Query: 715 KMGELHLAIRF 725
           K G ++L +  
Sbjct: 114 K-GVIYLEMDL 123

>d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.4 bits (143), Expect = 4e-11
 Identities = 34/127 (26%), Positives = 54/127 (42%), Gaps = 8/127 (6%)

Query: 5   KLGVQVVGAHNLLPKDGKGSSSAFVELYFDGQRFRTTIKENDLNPVWNESFYFNISDASK 64
            L V+V+ A +LL  D  G S  F  L     R +T     +LNP WN+ F F I D   
Sbjct: 7   ILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFPIKD--I 64

Query: 65  LHYLTLEAYIYNNIGDTNSRSFLGKVCLTGNSFVPLSDSVVLHYPLEKRGIFSHVRGELG 124
              L +  +  +     +   FLGKV +   S   + D     Y L+ + +    +G + 
Sbjct: 65  HDVLEVTVFDEDGDKPPD---FLGKVAIPLLS---IRDGQPNCYVLKNKDLEQAFKGVIY 118

Query: 125 LKVYITD 131
           L++ +  
Sbjct: 119 LEMDLIY 125

>d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.9 bits (139), Expect = 1e-10
 Identities = 30/130 (23%), Positives = 58/130 (44%), Gaps = 15/130 (11%)

Query: 435 YVRVNVVEAQDLVPTEKNHFPDVYVKAQIGNQVLKTKICQARTLSAVWNEDLLFVAAEPF 494
            ++V V++A DL+  + +   D +   ++GN  L+T     + L+  WN+   F   +  
Sbjct: 7   ILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVY-KNLNPEWNKVFTFPIKDIH 65

Query: 495 EDHLVLTVEDRVGPGKDEIIGRVIIPLSAIEKRADERIIHSRWFNLEKPVAVDVDQLKKE 554
            D L +TV D  G    + +G+V IPL +I             + L+       ++  ++
Sbjct: 66  -DVLEVTVFDEDGDKPPDFLGKVAIPLLSIRDGQP------NCYVLK-------NKDLEQ 111

Query: 555 KFSSRIHLRV 564
            F   I+L +
Sbjct: 112 AFKGVIYLEM 121

>d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 132

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain from protein kinase c (beta)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 79.7 bits (196), Expect = 3e-18
 Identities = 35/119 (29%), Positives = 58/119 (48%), Gaps = 14/119 (11%)

Query: 272 LYVRVVKARELPAMDLTGSIDPFVEVKIGNYKG-----ITKHYEKNQNPQWHQVFAFS-R 325
           L V V  A+ L  MD  G  DP+V++K+           TK  + + NP+W++ F F  +
Sbjct: 17  LIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLK 76

Query: 326 DRMQASVLEVVIKDKDLV-KDDFVGIVRFDINEVPLRVPPDSPLAPEWYRLED-KKGEK 382
           +  +   L V I D DL  ++DF+G + F I+E+             W++L   ++GE 
Sbjct: 77  ESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISELQKAG------VDGWFKLLSQEEGEY 129

>d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 132

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain from protein kinase c (beta)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 63.9 bits (155), Expect = 1e-12
 Identities = 29/112 (25%), Positives = 51/112 (45%), Gaps = 12/112 (10%)

Query: 436 VRVNVVEAQDLVPTEKNHFPDVYVKAQI-----GNQVLKTKICQARTLSAVWNEDLLFVA 490
           + V V +A++LVP + N   D YVK ++          KTK  +  +L+  WNE   F  
Sbjct: 17  LIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIK-CSLNPEWNETFRFQL 75

Query: 491 AEPFEDH-LVLTVEDRVGPGKDEIIGRVIIPLSAIEKRADERIIHSRWFNLE 541
            E  +D  L + + D     +++ +G +   +S ++K   +      WF L 
Sbjct: 76  KESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISELQKAGVD-----GWFKLL 122

>d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 132

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain from protein kinase c (beta)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 61.6 bits (149), Expect = 7e-12
 Identities = 29/115 (25%), Positives = 50/115 (43%), Gaps = 12/115 (10%)

Query: 5   KLGVQVVGAHNLLPKDGKGSSSAFVELYFDG-----QRFRTTIKENDLNPVWNESFYFNI 59
            L V V  A NL+P D  G S  +V+L          + +T   +  LNP WNE+F F +
Sbjct: 16  VLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQL 75

Query: 60  SDASKLHYLTLEAYIYNNIGDTNSRSFLGKVCLTGNSFVPLSDSVVLH-YPLEKR 113
            ++ K   L++E + ++         F+G +    +    L  + V   + L  +
Sbjct: 76  KESDKDRRLSVEIWDWDLTS---RNDFMGSLSFGISE---LQKAGVDGWFKLLSQ 124

>d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 132

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain from protein kinase c (beta)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 59.7 bits (144), Expect = 3e-11
 Identities = 26/118 (22%), Positives = 52/118 (44%), Gaps = 17/118 (14%)

Query: 596 GILELGILNAVGLHPMKTRDGRGTSDTYCVAKY-----GHKWVRTRTLVDNLSPKYNEQY 650
            +L + + +A  L PM   D  G SD Y   K           +T+T+  +L+P++NE +
Sbjct: 15  EVLIVVVRDAKNLVPM---DPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETF 71

Query: 651 TWEVFDP--ATVLTVGVFDNSQLGEKSNGNKDLKIGKVRIRISTLETGRIYTHSYPLL 706
            +++ +      L+V ++D           ++  +G +   IS L+   +    + LL
Sbjct: 72  RFQLKESDKDRRLSVEIWDWDLTS------RNDFMGSLSFGISELQKAGV-DGWFKLL 122

>d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 136

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain protein At1g63220
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 78.6 bits (193), Expect = 9e-18
 Identities = 26/121 (21%), Positives = 49/121 (40%), Gaps = 7/121 (5%)

Query: 272 LYVRVVKARELPAMDLTGSIDPFVEVKIGNYKGITK-HYEKNQNPQWHQVFAFSRDRMQA 330
           L V +V A+ L   D   ++DP+V++        +         P+W++ F F+      
Sbjct: 12  LEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSEGTT 71

Query: 331 SVLEVVIKDKDLVKDDFVGIVRFDINEVPLRVPPDSPLAPEWYRLEDKKGEKIKGELMLA 390
            +   +       +DD VG     +      V  +  + P  Y +   K E+ KGE+ +A
Sbjct: 72  ELKAKIFDKDVGTEDDAVGEATIPLEP----VFVEGSIPPTAYNVV--KDEEYKGEIWVA 125

Query: 391 V 391
           +
Sbjct: 126 L 126

>d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 136

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain protein At1g63220
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 74.0 bits (181), Expect = 4e-16
 Identities = 27/130 (20%), Positives = 52/130 (40%), Gaps = 14/130 (10%)

Query: 436 VRVNVVEAQDLVPTEKNHFPDVYVKAQIGNQVLKTKICQARTLSAVWNEDLLFVAAEPFE 495
           + V +V A+ L   +  +  D YV+     Q  K+ + +    +  WNE  +F  +E   
Sbjct: 12  LEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSEG-T 70

Query: 496 DHLVLTVEDRVGPGKDEIIGRVIIPLSAIEKRADERIIHSRWFNLEKPVAVDVDQLKKEK 555
             L   + D+    +D+ +G   IPL  +     E  I    +N+          +K E+
Sbjct: 71  TELKAKIFDKDVGTEDDAVGEATIPLEPVFV---EGSIPPTAYNV----------VKDEE 117

Query: 556 FSSRIHLRVC 565
           +   I + + 
Sbjct: 118 YKGEIWVALS 127

>d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 136

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain protein At1g63220
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 68.6 bits (167), Expect = 3e-14
 Identities = 29/133 (21%), Positives = 55/133 (41%), Gaps = 15/133 (11%)

Query: 595 IGILELGILNAVGLHPMKTRDGRGTSDTYCVAKYGHKWVRTRT-LVDNLSPKYNEQYTWE 653
            G LE+ +++A GL      D     D Y       +  ++        +P++NE + + 
Sbjct: 9   HGTLEVVLVSAKGLEDA---DFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFT 65

Query: 654 VFDPATVLTVGVFDNSQLGEKSNGNKDLKIGKVRIRISTLET-GRIYTHSYPLLVLHPTG 712
           V +  T L   +FD      K  G +D  +G+  I +  +   G I   +Y ++      
Sbjct: 66  VSEGTTELKAKIFD------KDVGTEDDAVGEATIPLEPVFVEGSIPPTAYNVV----KD 115

Query: 713 VKKMGELHLAIRF 725
            +  GE+ +A+ F
Sbjct: 116 EEYKGEIWVALSF 128

>d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 136

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain protein At1g63220
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 59.8 bits (144), Expect = 3e-11
 Identities = 24/132 (18%), Positives = 47/132 (35%), Gaps = 10/132 (7%)

Query: 5   KLGVQVVGAHNLLPKDGKGSSSAFVELYFDGQRFRTT-IKENDLNPVWNESFYFNISDAS 63
            L V +V A  L   D   +   +V+L    Q  ++   +     P WNE+F F +S+ +
Sbjct: 11  TLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSEGT 70

Query: 64  KLHYLTLEAYIYNNIGDTNSRSFLGKVCLTGNSFVPLSDSVVLHYPLEKRGIFSHVRGEL 123
               L  + +  +          +G+  +               Y + K       +GE+
Sbjct: 71  --TELKAKIFDKDVGT---EDDAVGEATIPLEPVFVEGSIPPTAYNVVKDE---EYKGEI 122

Query: 124 GLKV-YITDDPS 134
            + + +    PS
Sbjct: 123 WVALSFKPSGPS 134

>d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Regulating synaptic membrane exocytosis protein, rim2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.7 bits (188), Expect = 3e-17
 Identities = 26/116 (22%), Positives = 53/116 (45%), Gaps = 17/116 (14%)

Query: 272 LYVRVVKARELPAMDLTGSIDPFVEVKI-----GNYKGITKHYEKNQNPQWHQVFAF--- 323
           L V ++ A++LP+ +     +P+V++          K  TK  +K   P+W+Q F +   
Sbjct: 16  LIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPV 75

Query: 324 SRDRMQASVLEVVIKDKDLV---KDDFVGIVRFDINEVPLRVPPDSPLAPEWYRLE 376
            R   +  +LE+ + D+  V   + +F+G +  ++              P WY+L+
Sbjct: 76  HRREFRERMLEITLWDQARVREEESEFLGEILIELETA------LLDDEPHWYKLQ 125

>d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Regulating synaptic membrane exocytosis protein, rim2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.9 bits (173), Expect = 4e-15
 Identities = 24/128 (18%), Positives = 47/128 (36%), Gaps = 14/128 (10%)

Query: 423 IRSKVYHSPRLWYVRVNVVEAQDLVPTEKNHFPDVYVKAQIGNQVLKTKICQAR----TL 478
           +  K++       + V ++ A+DL   E     + YVK             + +    TL
Sbjct: 3   LSIKLWFDKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTL 62

Query: 479 SAVWNEDLLFVAAEPFEDH---LVLTV--EDRVGPGKDEIIGRVIIPLSAIEKRADERII 533
              WN+  ++      E     L +T+  + RV   + E +G ++I L       +    
Sbjct: 63  EPKWNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETALLDDEP--- 119

Query: 534 HSRWFNLE 541
              W+ L+
Sbjct: 120 --HWYKLQ 125

>d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Regulating synaptic membrane exocytosis protein, rim2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.0 bits (155), Expect = 1e-12
 Identities = 26/113 (23%), Positives = 51/113 (45%), Gaps = 8/113 (7%)

Query: 5   KLGVQVVGAHNLLPKDGKGSSSAFVELYF-----DGQRFRTTIKENDLNPVWNESFYFNI 59
           +L V ++GA +L  ++     + +V++YF     D  + RT   +  L P WN++F ++ 
Sbjct: 15  QLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSP 74

Query: 60  SDASKLHYLTLEAYIYNNIGDTNSRS-FLGKVCLTGNSFVPLSDSVVLHYPLE 111
               +     LE  +++        S FLG++ +   +   L D     Y L+
Sbjct: 75  VHRREFRERMLEITLWDQARVREEESEFLGEILIELETA--LLDDEPHWYKLQ 125

>d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 138

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 74.4 bits (182), Expect = 3e-16
 Identities = 27/122 (22%), Positives = 54/122 (44%), Gaps = 17/122 (13%)

Query: 272 LYVRVVKARELPAMDLTGSIDPFVEVKIGN-----YKGITKHYEKNQNPQWHQVFAF--S 324
           L V V+KAR LP  D++G  DP+V+V + +      K  T   +   N  ++++F F   
Sbjct: 17  LTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFDIP 76

Query: 325 RDRMQASVLEVVIKDKDLV-KDDFVGIVRFDINEVPLRVP--------PDSPLAPEWYRL 375
            + ++   +E ++ D +   +++ +G +                    P   +A +W+ L
Sbjct: 77  CESLEEISVEFLVLDSERGSRNEVIGRLVLGATAEGSGGGHWKEICDFPRRQIA-KWHML 135

Query: 376 ED 377
            D
Sbjct: 136 CD 137

>d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 138

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 61.3 bits (148), Expect = 1e-11
 Identities = 21/98 (21%), Positives = 38/98 (38%), Gaps = 9/98 (9%)

Query: 5   KLGVQVVGAHNLLPKDGKGSSSAFVELYFDGQ-----RFRTTIKENDLNPVWNESFYFNI 59
            L V V+ A +L   D  G S  +V++          + +T +K+   N V+NE F F+I
Sbjct: 16  TLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFDI 75

Query: 60  SDAS-KLHYLTLEAYIYNNIGDTNSRSFLGKVCLTGNS 96
              S +   +                  +G++ L   +
Sbjct: 76  PCESLEEISVEFLVLDSERGS---RNEVIGRLVLGATA 110

>d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 138

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 60.9 bits (147), Expect = 1e-11
 Identities = 27/120 (22%), Positives = 51/120 (42%), Gaps = 16/120 (13%)

Query: 436 VRVNVVEAQDLVPTEKNHFPDVYVKAQIGNQV-----LKTKICQARTLSAVWNEDLLF-- 488
           + V V++A+ L  ++ +   D YVK  + +        KT + +  T +AV+NE  +F  
Sbjct: 17  LTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKK-CTPNAVFNELFVFDI 75

Query: 489 VAAEPFEDHLVLTVEDRVGPGKDEIIGRVIIPLSAIEKRADE--------RIIHSRWFNL 540
                 E  +   V D     ++E+IGR+++  +A               R   ++W  L
Sbjct: 76  PCESLEEISVEFLVLDSERGSRNEVIGRLVLGATAEGSGGGHWKEICDFPRRQIAKWHML 135

>d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 138

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 43.2 bits (101), Expect = 2e-05
 Identities = 19/122 (15%), Positives = 40/122 (32%), Gaps = 19/122 (15%)

Query: 593 PSIGILELGILNAVGLHPMKTRDGRGTSDTYCVAKYGHKW-----VRTRTLVDNLSPKYN 647
            +   L + +L A  L      D  G SD Y      H        +T       +  +N
Sbjct: 12  STTNTLTVVVLKARHLPKS---DVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFN 68

Query: 648 EQYTWEVFDP---ATVLTVGVFDNSQLGEKSNGNKDLKIGKVRIRISTLETGRIYTHSYP 704
           E + +++         +   V D+ +        ++  IG++ +  +   +G    H   
Sbjct: 69  ELFVFDIPCESLEEISVEFLVLDSERGS------RNEVIGRLVLGATAEGSG--GGHWKE 120

Query: 705 LL 706
           + 
Sbjct: 121 IC 122

>d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 142

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Piccolo
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 74.5 bits (182), Expect = 3e-16
 Identities = 35/125 (28%), Positives = 58/125 (46%), Gaps = 23/125 (18%)

Query: 272 LYVRVVKARELPAMDLTGSIDPFVEVKI--------------GNYKGITKHYEKNQNPQW 317
           L + +++AR L   D  G  DPFV+V +                YK  TK+ +K+ NP+W
Sbjct: 20  LIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEW 79

Query: 318 HQVFAF---SRDRMQASVLEVVIKDKDLV-KDDFVGIVRFDINEVPLRVPPDSPLAPEWY 373
           +Q   +   S +++    LEV + D D    +DF+G V  D++             P WY
Sbjct: 80  NQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLDN-----TPRWY 134

Query: 374 RLEDK 378
            L+++
Sbjct: 135 PLKEQ 139

>d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 142

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Piccolo
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 61.1 bits (147), Expect = 1e-11
 Identities = 32/123 (26%), Positives = 56/123 (45%), Gaps = 16/123 (13%)

Query: 5   KLGVQVVGAHNLLPKDGKGSSSAFVELYF--------------DGQRFRTTIKENDLNPV 50
            L + ++ A NL+P+D  G S  FV++Y                  + RT   +  LNP 
Sbjct: 19  NLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPE 78

Query: 51  WNESFYFNISDASKLHYLTLEAYIYNNIGDTNSRSFLGKVCLTGNSFVPLSDSVVLHYPL 110
           WN++  +      +L   TLE  +++     +S  FLG+V +  +S     D+    YPL
Sbjct: 79  WNQTVIYKSISMEQLMKKTLEVTVWDY-DRFSSNDFLGEVLIDLSS-TSHLDNTPRWYPL 136

Query: 111 EKR 113
           +++
Sbjct: 137 KEQ 139

>d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 142

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Piccolo
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 57.2 bits (137), Expect = 3e-10
 Identities = 25/124 (20%), Positives = 57/124 (45%), Gaps = 22/124 (17%)

Query: 436 VRVNVVEAQDLVPTEKNHFPDVYVKAQI--------------GNQVLKTKICQARTLSAV 481
           + +++++A++LVP + N + D +VK  +                   +TK    ++L+  
Sbjct: 20  LIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTK-YVQKSLNPE 78

Query: 482 WNEDLLFV---AAEPFEDHLVLTVEDRVGPGKDEIIGRVIIPLSAIEKRADERIIHSRWF 538
           WN+ +++      +  +  L +TV D      ++ +G V+I LS+     +      RW+
Sbjct: 79  WNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLDN----TPRWY 134

Query: 539 NLEK 542
            L++
Sbjct: 135 PLKE 138

>d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 142

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Piccolo
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 46.8 bits (110), Expect = 1e-06
 Identities = 27/131 (20%), Positives = 46/131 (35%), Gaps = 27/131 (20%)

Query: 594 SIGILELGILNAVGLHPMKTRDGRGTSDTYCV--------------AKYGHKWVRTRTLV 639
            +G L + IL A  L P    D  G SD +                        RT+ + 
Sbjct: 16  DLGNLIIHILQARNLVPR---DNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQ 72

Query: 640 DNLSPKYNEQYTWEVFD----PATVLTVGVFDNSQLGEKSNGNKDLKIGKVRIRISTLET 695
            +L+P++N+   ++           L V V+D  +         +  +G+V I +S+   
Sbjct: 73  KSLNPEWNQTVIYKSISMEQLMKKTLEVTVWDYDRFS------SNDFLGEVLIDLSSTSH 126

Query: 696 GRIYTHSYPLL 706
                  YPL 
Sbjct: 127 LDNTPRWYPLK 137

>d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 143

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 72.5 bits (177), Expect = 1e-15
 Identities = 32/111 (28%), Positives = 53/111 (47%), Gaps = 11/111 (9%)

Query: 272 LYVRVVKARELPAMDLTGSIDPFVEVKI---GNYKGITKHYEKNQNPQWHQVFAF--SRD 326
           L V +++A ELPA+D+ G+ DP+V+V +      K  TK + K  NP +++ F F     
Sbjct: 36  LLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYS 95

Query: 327 RMQASVLEVVIKDKD-LVKDDFVGIVRFDINEVPLRVPPDSPLAPEWYRLE 376
            +    L + + D D   K D +G  +  +N V         +  EW  L+
Sbjct: 96  ELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDF-----GHVTEEWRDLQ 141

>d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 143

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 58.6 bits (141), Expect = 9e-11
 Identities = 27/124 (21%), Positives = 56/124 (45%), Gaps = 10/124 (8%)

Query: 423 IRSKVYHSPRLWYVRVNVVEAQDLVPTEKNHFPDVYVKAQI---GNQVLKTKICQARTLS 479
           ++  + +  +   + V +++A +L   +     D YVK  +     +  +TK+ + +TL+
Sbjct: 23  LQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHR-KTLN 81

Query: 480 AVWNEDLLF--VAAEPFEDHLVLTVEDRVGPGKDEIIGRVIIPLSAIEKRADERIIHSRW 537
            V+NE   F    +E     LV+ V D     K +IIG   +P++ ++           W
Sbjct: 82  PVFNEQFTFKVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDF--GHVTEE--W 137

Query: 538 FNLE 541
            +L+
Sbjct: 138 RDLQ 141

>d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 143

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 58.2 bits (140), Expect = 1e-10
 Identities = 29/120 (24%), Positives = 50/120 (41%), Gaps = 15/120 (12%)

Query: 593 PSIGILELGILNAVGLHPMKTRDGRGTSDTYC---VAKYGHKWVRTRTLVDNLSPKYNEQ 649
                L +GI+ A  L  +   D  GTSD Y    +     K   T+     L+P +NEQ
Sbjct: 31  FQNNQLLVGIIQAAELPAL---DMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQ 87

Query: 650 YTWEV---FDPATVLTVGVFDNSQLGEKSNGNKDLKIGKVRIRISTLETGRIYTHSYPLL 706
           +T++V         L + V+D  +        K   IG+ ++ ++T++ G +      L 
Sbjct: 88  FTFKVPYSELGGKTLVMAVYDFDRFS------KHDIIGEFKVPMNTVDFGHVTEEWRDLQ 141

>d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 143

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 54.8 bits (131), Expect = 2e-09
 Identities = 24/111 (21%), Positives = 47/111 (42%), Gaps = 8/111 (7%)

Query: 5   KLGVQVVGAHNLLPKDGKGSSSAFVELYF---DGQRFRTTIKENDLNPVWNESFYFNISD 61
           +L V ++ A  L   D  G+S  +V+++      ++F T +    LNPV+NE F F +  
Sbjct: 35  QLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPY 94

Query: 62  ASKLH-YLTLEAYIYNNIGDTNSRSFLGKVCLTGNSFVPLSDSVVLHYPLE 111
           +      L +  Y ++     +    +G+  +  N+ V           L+
Sbjct: 95  SELGGKTLVMAVYDFDRFSKHD---IIGEFKVPMNT-VDFGHVTEEWRDLQ 141

>d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]} Length = 133

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: E3 ubiquitin-protein ligase Itchy
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.1 bits (176), Expect = 1e-15
 Identities = 23/121 (19%), Positives = 39/121 (32%), Gaps = 2/121 (1%)

Query: 272 LYVRVVKARELPAMDLTGSIDPFVEVKIGNYKGITKHYEKNQNPQWHQVFAFSRDRMQAS 331
           L + V+ A+            P+VEV +      T+      +P+W Q        +   
Sbjct: 8   LQITVISAKLKENKKNWFGPSPYVEVTVDGQSKKTEKCNNTNSPKWKQPLTVIVTPVSKL 67

Query: 332 VLEVVIKDKDLVKDDFVGIVRFDINEVPLRVPPDSPLAPEWYRLE-DKKGEKIKGELMLA 390
              V      L  D  +G    DI E                +L  DK+  +  G+L + 
Sbjct: 68  HFRVWSHQT-LKSDVLLGTAALDIYETLKSNNMKLEEVVVTLQLGGDKEPTETIGDLSIC 126

Query: 391 V 391
           +
Sbjct: 127 L 127

>d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]} Length = 133

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: E3 ubiquitin-protein ligase Itchy
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.8 bits (157), Expect = 6e-13
 Identities = 25/133 (18%), Positives = 48/133 (36%), Gaps = 11/133 (8%)

Query: 436 VRVNVVEAQDLVPTEKNHFPDVYVKAQIGNQVLKTKICQARTLSAVWNEDLLFVAAEPFE 495
           +++ V+ A+     +    P  YV+  +  Q  KT+ C   T S  W + L  +     +
Sbjct: 8   LQITVISAKLKENKKNWFGPSPYVEVTVDGQSKKTEKCN-NTNSPKWKQPLTVIVTPVSK 66

Query: 496 DHLVLTVEDRVGPGKDEIIGRVIIPLSAIEKRADERIIHSRWFNLEKPVAVDVDQLKKEK 555
            H  +     +    D ++G   + +    K  +   +      L+           KE 
Sbjct: 67  LHFRVWSHQTL--KSDVLLGTAALDIYETLKS-NNMKLEEVVVTLQL-------GGDKEP 116

Query: 556 FSSRIHLRVCLDG 568
             +   L +CLDG
Sbjct: 117 TETIGDLSICLDG 129

>d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]} Length = 133

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: E3 ubiquitin-protein ligase Itchy
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.8 bits (126), Expect = 7e-09
 Identities = 25/138 (18%), Positives = 46/138 (33%), Gaps = 27/138 (19%)

Query: 5   KLGVQVVGAHNLLPKDGKGSSSAFVELYFDGQRFRTTIKENDLNPVWNESFYFNISDASK 64
           +L + V+ A     K      S +VE+  DGQ  +T    N  +P W +     ++    
Sbjct: 7   QLQITVISAKLKENKKNWFGPSPYVEVTVDGQSKKTEKCNNTNSPKWKQPLTVIVTPV-- 64

Query: 65  LHYLTLEAYIYNNIGDTNSRSFLGKVCLTGNSFVPLSD----------SVVLHYPLEKRG 114
              L    + +  +    S   LG         + + +           VV+   L    
Sbjct: 65  -SKLHFRVWSHQTLK---SDVLLGTA------ALDIYETLKSNNMKLEEVVVTLQLGGDK 114

Query: 115 IFSHVRGEL-----GLKV 127
             +   G+L     GL++
Sbjct: 115 EPTETIGDLSICLDGLQL 132

>d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 157

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 71.8 bits (175), Expect = 3e-15
 Identities = 33/136 (24%), Positives = 64/136 (47%), Gaps = 21/136 (15%)

Query: 272 LYVRVVKARELPAMDLTGSIDPFVEVKIGNYKGI-----TKHYEKNQNPQWHQVFAF--S 324
           L V +++A+ L  MD+ G  DP+V++ +           T   +   NP +++ F+F   
Sbjct: 27  LTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVP 86

Query: 325 RDRMQASVLEVVIKDKDLV-KDDFVGIVRFDINEVPLRV--------PPDSPLAPEWYRL 375
            +++Q   + V + D D + K+D +G V    N     +         P  P+A +W+ L
Sbjct: 87  FEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIA-QWHTL 145

Query: 376 EDKKGEKIKGELMLAV 391
           + ++    + + MLAV
Sbjct: 146 QVEE----EVDAMLAV 157

>d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 157

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 59.8 bits (144), Expect = 6e-11
 Identities = 32/135 (23%), Positives = 58/135 (42%), Gaps = 16/135 (11%)

Query: 429 HSPRLWYVRVNVVEAQDLVPTEKNHFPDVYVKAQIGN-----QVLKTKICQARTLSAVWN 483
           + P    + V ++EA++L   +     D YVK  +       +  KT I +  TL+  +N
Sbjct: 20  YVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKK-NTLNPYYN 78

Query: 484 EDLLFV--AAEPFEDHLVLTVEDRVGPGKDEIIGRVIIPLSAIEKR--------ADERII 533
           E   F     +  +  +V+TV D    GK++ IG+V +  ++            A+ R  
Sbjct: 79  ESFSFEVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRP 138

Query: 534 HSRWFNLEKPVAVDV 548
            ++W  L+    VD 
Sbjct: 139 IAQWHTLQVEEEVDA 153

>d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 157

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 48.7 bits (115), Expect = 4e-07
 Identities = 29/98 (29%), Positives = 50/98 (51%), Gaps = 9/98 (9%)

Query: 5   KLGVQVVGAHNLLPKDGKGSSSAFVELYF-----DGQRFRTTIKENDLNPVWNESFYFNI 59
           KL V ++ A NL   D  G S  +V+++        ++ +TTIK+N LNP +NESF F +
Sbjct: 26  KLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEV 85

Query: 60  SDASKLHYLTLEAYIYNNIGDTNSRS-FLGKVCLTGNS 96
               ++  + +   +     D   ++  +GKV +  NS
Sbjct: 86  PF-EQIQKVQVV--VTVLDYDKIGKNDAIGKVFVGYNS 120

>d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 137

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2b-domain of rabphilin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 67.9 bits (165), Expect = 5e-14
 Identities = 29/120 (24%), Positives = 54/120 (45%), Gaps = 15/120 (12%)

Query: 272 LYVRVVKARELPAMDLTGSIDPFVEVKIGN-----YKGITKHYEKNQNPQWHQVFAF--S 324
           L V +++   L AMD  G  DPFV++ +        K  T+  +K  NP++++ F +   
Sbjct: 17  LIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIK 76

Query: 325 RDRMQASVLEVVIKDKDLV-KDDFVGIVRFDINEVPLRVPPDSPLAPEWYRLEDKKGEKI 383
              +    L++ + D D+   +D++G  +  I+    R+         WY     K +KI
Sbjct: 77  HSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISAKGERL-------KHWYECLKNKDKKI 129

>d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 137

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2b-domain of rabphilin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 55.6 bits (133), Expect = 9e-10
 Identities = 25/97 (25%), Positives = 46/97 (47%), Gaps = 7/97 (7%)

Query: 5   KLGVQVVGAHNLLPKDGKGSSSAFVELYFDG-----QRFRTTIKENDLNPVWNESFYFNI 59
            L V ++   +L   D  G S  FV+L+         + +T IK+  LNP +NE F+++I
Sbjct: 16  GLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDI 75

Query: 60  SDASKLHYLTLEAYIYNNIGDTNSRSFLGKVCLTGNS 96
              S L   +L+  +++      S  ++G   L  ++
Sbjct: 76  KH-SDLAKKSLDISVWDY-DIGKSNDYIGGCQLGISA 110

>d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 137

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2b-domain of rabphilin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 54.5 bits (130), Expect = 2e-09
 Identities = 26/134 (19%), Positives = 54/134 (40%), Gaps = 16/134 (11%)

Query: 423 IRSKVYHSPRLWYVRVNVVEAQDLVPTEKNHFPDVYVKAQIGN-----QVLKTKICQART 477
           I   + +S +   + V ++    L   + N + D +VK  +          KT+I + +T
Sbjct: 4   ILVSLMYSTQQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKK-KT 62

Query: 478 LSAVWNEDLLF--VAAEPFEDHLVLTVEDRVGPGKDEIIGRVIIPLSAIEKRADE----- 530
           L+  +NE+  +    ++  +  L ++V D      ++ IG   + +SA  +R        
Sbjct: 63  LNPEFNEEFFYDIKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISAKGERLKHWYECL 122

Query: 531 ---RIIHSRWFNLE 541
                   RW  L+
Sbjct: 123 KNKDKKIERWHQLQ 136

>d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 137

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2b-domain of rabphilin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.3 bits (88), Expect = 0.001
 Identities = 27/119 (22%), Positives = 44/119 (36%), Gaps = 13/119 (10%)

Query: 593 PSIGILELGILNAVGLHPMKTRDGRGTSDTYCVAKYGH-----KWVRTRTLVDNLSPKYN 647
              G L +GI+  V L  M   D  G SD +               +T+     L+P++N
Sbjct: 12  TQQGGLIVGIIRCVHLAAM---DANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFN 68

Query: 648 EQYTWEVFDPATVLTVGVFDNSQLGEKSNGNKDLKIGKVRIRISTLETGRIYTHSYPLL 706
           E++ +++    + L     D S        + D  IG  ++ IS         H Y  L
Sbjct: 69  EEFFYDI--KHSDLAKKSLDISVWDYDIGKSNDY-IGGCQLGISAKGERL--KHWYECL 122

>d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 145

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 67.1 bits (163), Expect = 1e-13
 Identities = 29/125 (23%), Positives = 56/125 (44%), Gaps = 18/125 (14%)

Query: 272 LYVRVVKARELPAMDLTGSIDPFVEVKIGNY-----KGITKHYEKNQNPQWHQVFAF--S 324
           L V ++KA  L AMDLTG  DP+V+  + +      K  T   +   NP +++   F  +
Sbjct: 22  LTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVA 81

Query: 325 RDRMQASVLEVVIKDKDLV-KDDFVGIVRFDINEV---------PLRVPPDSPLAPEWYR 374
            + ++   L + + D D +  ++ +G+ R                +   P  P+   W++
Sbjct: 82  PESVENVGLSIAVVDYDCIGHNEVIGVCRVGPEAADPHGREHWAEMLANPRKPVE-HWHQ 140

Query: 375 LEDKK 379
           L ++K
Sbjct: 141 LVEEK 145

>d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 145

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 54.8 bits (131), Expect = 2e-09
 Identities = 29/127 (22%), Positives = 49/127 (38%), Gaps = 15/127 (11%)

Query: 429 HSPRLWYVRVNVVEAQDLVPTEKNHFPDVYVKAQIGNQVLKTKICQA----RTLSAVWNE 484
           + P    + V +++A +L   +   F D YVKA + ++  + K  +      TL+  +NE
Sbjct: 15  YLPTAGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNE 74

Query: 485 DLLF--VAAEPFEDHLVLTVEDRVGPGKDEIIGRVIIPLSAIEKRADE---------RII 533
            L+F           L + V D    G +E+IG   +   A +    E         R  
Sbjct: 75  ALVFDVAPESVENVGLSIAVVDYDCIGHNEVIGVCRVGPEAADPHGREHWAEMLANPRKP 134

Query: 534 HSRWFNL 540
              W  L
Sbjct: 135 VEHWHQL 141

>d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 145

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 47.1 bits (111), Expect = 1e-06
 Identities = 25/94 (26%), Positives = 45/94 (47%), Gaps = 9/94 (9%)

Query: 5   KLGVQVVGAHNLLPKDGKGSSSAFVELYFDG-----QRFRTTIKENDLNPVWNESFYFNI 59
            L V ++ A NL   D  G S  +V+          ++ +T+IK+N LNP +NE+  F++
Sbjct: 21  LLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDV 80

Query: 60  SDASKLHY-LTLEAYIYNNIGDTNSRSFLGKVCL 92
           +  S  +  L++    Y+ IG       +G   +
Sbjct: 81  APESVENVGLSIAVVDYDCIG---HNEVIGVCRV 111

>d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 130

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 63.1 bits (152), Expect = 2e-12
 Identities = 33/112 (29%), Positives = 50/112 (44%), Gaps = 9/112 (8%)

Query: 272 LYVRVVKARELPAMDLTGSIDPFVE---VKIGNYKGITKHYEKNQNPQWHQVFAF--SRD 326
           L VR+++A +LPA D  G  DP+V+   +     K  TK + K  NP +++ F F     
Sbjct: 20  LVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPLA 79

Query: 327 RMQASVLEVVIKDKDLV-KDDFVGIVRFDINEVPLRVPPDSPLAPEWYRLED 377
            +    L   + D D   + D +G V  D        PPD PL   W  + +
Sbjct: 80  ELAQRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQPPDRPL---WRDILE 128

>d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 130

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 55.3 bits (132), Expect = 9e-10
 Identities = 27/125 (21%), Positives = 54/125 (43%), Gaps = 8/125 (6%)

Query: 423 IRSKVYHSPRLWYVRVNVVEAQDLVPTEKNHFPDVYVKAQI---GNQVLKTKICQARTLS 479
           I   + +      + V +++A DL   + N F D YVK  +     +  +TK+ + +TL+
Sbjct: 7   ISFALRYLYGSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHR-KTLN 65

Query: 480 AVWNEDLLFV--AAEPFEDHLVLTVEDRVGPGKDEIIGRVIIPLSAIEKRADERIIHSRW 537
            ++NE   F    AE  +  L  +V D     + ++IG+V++                 W
Sbjct: 66  PIFNETFQFSVPLAELAQRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQPPDRPL--W 123

Query: 538 FNLEK 542
            ++ +
Sbjct: 124 RDILE 128

>d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 130

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 46.9 bits (110), Expect = 8e-07
 Identities = 30/115 (26%), Positives = 54/115 (46%), Gaps = 8/115 (6%)

Query: 5   KLGVQVVGAHNLLPKDGKGSSSAFVE---LYFDGQRFRTTIKENDLNPVWNESFYFNISD 61
           +L V+++ A +L  KD  G S  +V+   L    ++F+T +    LNP++NE+F F++  
Sbjct: 19  QLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPL 78

Query: 62  ASKLHYLTLEAYIYNNIGDTNSRS-FLGKVCLTGNS-FVPLSDSVVLHYPLEKRG 114
            ++L    L   +Y+   D  SR   +G+V L              L   + + G
Sbjct: 79  -AELAQRKLHFSVYDF--DRFSRHDLIGQVVLDNLLELAEQPPDRPLWRDILEGG 130

>d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 130

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 39.6 bits (91), Expect = 4e-04
 Identities = 20/119 (16%), Positives = 36/119 (30%), Gaps = 11/119 (9%)

Query: 593 PSIGILELGILNAVGLHPMKTRDGRGTSDTYCVAKYGHKWVRTRTLVDNLSPKYNEQYTW 652
                L + IL A+ L    +           +     K  +T+     L+P +NE + +
Sbjct: 15  YGSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQF 74

Query: 653 EVFDP---ATVLTVGVFDNSQLGEKSNGNKDLKIGKVRIRIST--LETGRIYTHSYPLL 706
            V         L   V+D  +        +   IG+V +       E          +L
Sbjct: 75  SVPLAELAQRKLHFSVYDFDRFS------RHDLIGQVVLDNLLELAEQPPDRPLWRDIL 127

>d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]} Length = 138

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.1 bits (150), Expect = 5e-12
 Identities = 28/117 (23%), Positives = 47/117 (40%), Gaps = 14/117 (11%)

Query: 272 LYVRVVKARELPAMDLTG-SIDPFVEVKI---GNYKGITKHYEKNQNPQWHQVFAF---S 324
             V + +AR LPAMD    + DP++++ I     +K  T+   K  +P + + F F    
Sbjct: 24  FVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFYGIP 83

Query: 325 RDRMQASVLEVVIKDKDLV-KDDFVGIVRFDINEVPLRVPPDSPLAPEWYRLEDKKG 380
             ++Q   L   I   D   +DD +G V   ++ + L               E   G
Sbjct: 84  YTQIQELALHFTILSFDRFSRDDIIGEVLIPLSGIELS------EGKMLMNREIISG 134

>d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]} Length = 138

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.1 bits (119), Expect = 8e-08
 Identities = 19/93 (20%), Positives = 39/93 (41%), Gaps = 7/93 (7%)

Query: 5   KLGVQVVGAHNLLPKD-GKGSSSAFVELYF---DGQRFRTTIKENDLNPVWNESFYFNIS 60
              V +  A  L   D    +S  ++++        + +T +    L+P ++E+F F   
Sbjct: 23  AFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFYGI 82

Query: 61  DASKLHYLTLEAYIYNNIGDTNSRS-FLGKVCL 92
             +++  L L   I +   D  SR   +G+V +
Sbjct: 83  PYTQIQELALHFTILSF--DRFSRDDIIGEVLI 113

>d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]} Length = 138

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.2 bits (114), Expect = 3e-07
 Identities = 30/108 (27%), Positives = 53/108 (49%), Gaps = 9/108 (8%)

Query: 437 RVNVVEAQDLVPTEKN-HFPDVYVKAQI---GNQVLKTKICQARTLSAVWNEDLLFV--- 489
            VN+ EA+ L   ++     D Y+K  I       +KT++ + +TL   ++E   F    
Sbjct: 25  VVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLR-KTLDPAFDETFTFYGIP 83

Query: 490 AAEPFEDHLVLTVEDRVGPGKDEIIGRVIIPLSAIEKRADERIIHSRW 537
             +  E  L  T+       +D+IIG V+IPLS IE  ++ +++ +R 
Sbjct: 84  YTQIQELALHFTILSFDRFSRDDIIGEVLIPLSGIE-LSEGKMLMNRE 130

>d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]} Length = 138

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.9 bits (108), Expect = 2e-06
 Identities = 25/114 (21%), Positives = 39/114 (34%), Gaps = 15/114 (13%)

Query: 591 WRPSIGILELGILNAVGLHPMKTRDGRGTSDTYCVAKY---GHKWVRTRTLVDNLSPKYN 647
           +        + I  A GL  M   +   TSD Y            V+TR L   L P ++
Sbjct: 17  YNFERKAFVVNIKEARGLPAMD--EQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFD 74

Query: 648 EQYTWEVFDPA----TVLTVGVFDNSQLGEKSNGNKDLKIGKVRIRISTLETGR 697
           E +T+            L   +    +        +D  IG+V I +S +E   
Sbjct: 75  ETFTFYGIPYTQIQELALHFTILSFDRFS------RDDIIGEVLIPLSGIELSE 122

>d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]} Length = 136

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C epsilon
species: Rat (Rattus rattus) [TaxId: 10117]

 Score = 59.1 bits (142), Expect = 6e-11
 Identities = 19/145 (13%), Positives = 48/145 (33%), Gaps = 29/145 (20%)

Query: 435 YVRVNVVEAQDLVPTE-----------KNHFPDVYVKAQIGNQVLKTKICQARTLSAVWN 483
            +++ + EA  L PT            +    D Y+   + +  +     + +T S  W+
Sbjct: 7   LLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAWH 66

Query: 484 EDLLFVAAEPFEDHLVLTVEDRVGPGKDEIIGRVIIPLSAIEKRADERIIHSRWFNLEKP 543
           ++ +       +  L +  +  +G   D+ +    I    + +          W +LE  
Sbjct: 67  DEFVTDVCNGRKIELAVFHDAPIGY--DDFVANCTIQFEELLQNGSRH--FEDWIDLEP- 121

Query: 544 VAVDVDQLKKEKFSSRIHLRVCLDG 568
                          ++++ + L G
Sbjct: 122 -------------EGKVYVIIDLSG 133

>d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]} Length = 136

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C epsilon
species: Rat (Rattus rattus) [TaxId: 10117]

 Score = 56.8 bits (136), Expect = 3e-10
 Identities = 25/134 (18%), Positives = 48/134 (35%), Gaps = 22/134 (16%)

Query: 272 LYVRVVKARELPAMDL-----------TGSIDPFVEVKIGNYK-GITKHYEKNQNPQWHQ 319
           L +++ +A  L                T  +DP++ + + + + G T   +K  +P WH 
Sbjct: 8   LKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAWHD 67

Query: 320 VFAFSRDRMQASVLEVVIKDKDLVKDDFVGIVRFDINEVPLRVPPDSPLAPEWYRLEDKK 379
            F       +   L V      +  DDFV        E+       S    +W  LE   
Sbjct: 68  EFVTDVCNGRKIELAVFHDAP-IGYDDFVANCTIQFEELLQN---GSRHFEDWIDLEP-- 121

Query: 380 GEKIKGELMLAVWI 393
               +G++ + + +
Sbjct: 122 ----EGKVYVIIDL 131

>d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]} Length = 136

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C epsilon
species: Rat (Rattus rattus) [TaxId: 10117]

 Score = 53.0 bits (126), Expect = 8e-09
 Identities = 25/142 (17%), Positives = 50/142 (35%), Gaps = 26/142 (18%)

Query: 596 GILELGILNAVGLHPMKT--------RDGRGTSDTYCVAKYG-HKWVRTRTLVDNLSPKY 646
           G+L++ I  AV L P           R      D Y        +  +T T     SP +
Sbjct: 6   GLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAW 65

Query: 647 NEQYTWEVFDPATVLTVGVFDNSQLGEKSNGNKDLKIGKVRIRISTL--ETGRIYTHSYP 704
           ++++  +V +   +  + VF ++ +G          +    I+   L     R +     
Sbjct: 66  HDEFVTDVCNGRKI-ELAVFHDAPIGYDDF------VANCTIQFEELLQNGSRHFEDWID 118

Query: 705 LLVLHPTGVKKMGELHLAIRFS 726
           L        +  G++++ I  S
Sbjct: 119 L--------EPEGKVYVIIDLS 132

>d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]} Length = 136

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C epsilon
species: Rat (Rattus rattus) [TaxId: 10117]

 Score = 42.6 bits (99), Expect = 4e-05
 Identities = 20/139 (14%), Positives = 46/139 (33%), Gaps = 26/139 (18%)

Query: 5   KLGVQVVGAHNLLPKD-----------GKGSSSAFVELYFDGQRF-RTTIKENDLNPVWN 52
            L +++  A +L P                    ++ L  D  R  +T  K+   +P W+
Sbjct: 7   LLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAWH 66

Query: 53  ESFYFNISDASKLHYLTLEAYIYNNIGDTNSRSFLGKVCLTGNSFVP-LSDSVVLHYPLE 111
           + F  ++ +      + L  +    IG  +   F+    +     +   S        LE
Sbjct: 67  DEFVTDVCNG---RKIELAVFHDAPIGYDD---FVANCTIQFEELLQNGSRHFEDWIDLE 120

Query: 112 KRGIFSHVRGELGLKVYIT 130
                    G++ + + ++
Sbjct: 121 P-------EGKVYVIIDLS 132

>d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 123

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C delta
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 57.1 bits (137), Expect = 2e-10
 Identities = 18/127 (14%), Positives = 41/127 (32%), Gaps = 16/127 (12%)

Query: 271 FLYVRVVKARELPAMDLTGSIDPFVEVKIGNYKGI-----TKHYEKNQNPQWHQVFAFSR 325
           FL +               +  PF  VK+               +    P+W   F    
Sbjct: 4   FLRISFNSYELGSLQAEDDASQPFCAVKMKEALTTDRGKTLVQKKPTMYPEWKSTFDAHI 63

Query: 326 DRMQASVLEVVIKDKDLVKDDFVGIVRFDINEVPLRVPPDSPLAPEWYRLEDKKGEKIKG 385
              +  V+++V+       +D +  V   ++ +  R   ++  A  W  L+       + 
Sbjct: 64  Y--EGRVIQIVLMRAA---EDPMSEVTVGVSVLAERCKKNNGKAEFWLDLQP------QA 112

Query: 386 ELMLAVW 392
           ++++ V 
Sbjct: 113 KVLMCVQ 119

>d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 123

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C delta
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 46.3 bits (109), Expect = 1e-06
 Identities = 10/128 (7%), Positives = 38/128 (29%), Gaps = 21/128 (16%)

Query: 603 LNAVGLHPMKTRDGRGTSDTYCVAKYGH-----KWVRTRTLVDNLSPKYNEQYTWEVFDP 657
            N+  L  ++  D    S  +C  K        +          + P++   +   +   
Sbjct: 9   FNSYELGSLQAEDD--ASQPFCAVKMKEALTTDRGKTLVQKKPTMYPEWKSTFDAHI-YE 65

Query: 658 ATVLTVGVFDNSQLGEKSNGNKDLKIGKVRIRISTLETGRIYTHSYPLLVLHPTGVKKMG 717
             V+ + +   ++     +   ++ +G   +     +          L        +   
Sbjct: 66  GRVIQIVLMRAAE-----DPMSEVTVGVSVLAERCKKNNGKAEFWLDL--------QPQA 112

Query: 718 ELHLAIRF 725
           ++ + +++
Sbjct: 113 KVLMCVQY 120

>d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 123

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C delta
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 42.8 bits (100), Expect = 2e-05
 Identities = 12/123 (9%), Positives = 34/123 (27%), Gaps = 14/123 (11%)

Query: 4   LKLGVQVVGAHNLLPKDGKGSSSAFVELYFDGQR-----FRTTIKENDLNPVWNESFYFN 58
           L++        +L  +D   +S  F  +                K+  + P W  +F  +
Sbjct: 5   LRISFNSYELGSLQAEDD--ASQPFCAVKMKEALTTDRGKTLVQKKPTMYPEWKSTFDAH 62

Query: 59  ISDASKLHYLTLEAYIYNNIGDTNSRSFLGKVCLTGNSFVPLSDSVVLHYPLEKRG-IFS 117
           I +      + +          +     +  +          ++       L+ +  +  
Sbjct: 63  IYEG---RVIQIVLMRAAEDPMSEVTVGVSVLAERCKKNNGKAE---FWLDLQPQAKVLM 116

Query: 118 HVR 120
            V+
Sbjct: 117 CVQ 119

>d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 131

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 57.5 bits (138), Expect = 2e-10
 Identities = 23/115 (20%), Positives = 38/115 (33%), Gaps = 14/115 (12%)

Query: 436 VRVNVVEAQDLVPT--EKNHFPDVYVKAQI-----GNQVLKTKICQARTLSAVWNEDLLF 488
           +RV ++  Q L      KN   D  V  +I          +T +      +  W+ +  F
Sbjct: 6   LRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEF 65

Query: 489 VAAEPFEDHLVLTVEDRVGPGKDEIIGRVIIPLSAIEKRADERIIHSRWFNLEKP 543
               P    +   VED     K++ IG+  IP        +      R  +L   
Sbjct: 66  EVTVPDLALVRFMVEDYDSSSKNDFIGQSTIPW-------NSLKQGYRHVHLLSK 113

>d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 131

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 57.1 bits (137), Expect = 3e-10
 Identities = 26/123 (21%), Positives = 46/123 (37%), Gaps = 17/123 (13%)

Query: 272 LYVRVVKARELP--AMDLTGSIDPFVEVKIGNYKGITKHYEKNQ------NPQWHQVFAF 323
           L VR++  ++LP    +    +DP V V+I      T   +         NP+W   F F
Sbjct: 6   LRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEF 65

Query: 324 SRDRMQASVLEVVIKDKDLV-KDDFVGIVRFDINEVPLRVPPDSPLAPEWYRLEDKKGEK 382
                  +++  +++D D   K+DF+G      N +                L  K G++
Sbjct: 66  EVTVPDLALVRFMVEDYDSSSKNDFIGQSTIPWNSLKQG--------YRHVHLLSKNGDQ 117

Query: 383 IKG 385
              
Sbjct: 118 HPS 120

>d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 131

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 54.4 bits (130), Expect = 2e-09
 Identities = 28/138 (20%), Positives = 49/138 (35%), Gaps = 16/138 (11%)

Query: 2   RNLKLGVQVVGAHNL--LPKDGKGSSSAFVELYF-----DGQRFRT-TIKENDLNPVWNE 53
           R  +L V+++    L  + K+        V +       D    +T  I  N  NP W+ 
Sbjct: 2   RPERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDM 61

Query: 54  SFYFNISDASKLHYLTLEAYIYNNIGDTNSRSFLGKVCLTGNSFVPLSDSVVLHYPLEKR 113
            F F ++    L  +      Y++    +   F+G+  +  NS          H  L  +
Sbjct: 62  EFEFEVTV-PDLALVRFMVEDYDSSSKND---FIGQSTIPWNSLKQGYR----HVHLLSK 113

Query: 114 GIFSHVRGELGLKVYITD 131
               H    L +K+ I D
Sbjct: 114 NGDQHPSATLFVKISIQD 131

>d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 131

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.6 bits (89), Expect = 6e-04
 Identities = 25/123 (20%), Positives = 50/123 (40%), Gaps = 19/123 (15%)

Query: 591 WRPSIGILELGILNAVGLHPMKTRDGRGTSDTYCVAKY---GHKWVRTRTLV---DNLSP 644
           WRP    L + I++   L P   ++     D   + +    G      +T V   +  +P
Sbjct: 1   WRP--ERLRVRIISGQQL-PKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNP 57

Query: 645 KYNEQYTWEVFDPAT-VLTVGVFDNSQLGEKSNGNKDLKIGKVRIRISTLETGRIYTHSY 703
           +++ ++ +EV  P   ++   V D        + +K+  IG+  I  ++L+ G       
Sbjct: 58  RWDMEFEFEVTVPDLALVRFMVED------YDSSSKNDFIGQSTIPWNSLKQGY---RHV 108

Query: 704 PLL 706
            LL
Sbjct: 109 HLL 111

>d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9606]} Length = 138

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin XIII
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.3 bits (132), Expect = 1e-09
 Identities = 14/115 (12%), Positives = 37/115 (32%), Gaps = 15/115 (13%)

Query: 272 LYVRVVKARELPAMDLTGSIDPFVEVKIGNYKGI----TKHYEKNQNPQWHQVFAFSRDR 327
           L+V  ++A      +  G  D +V+  + N  G     T   ++  +  W +        
Sbjct: 28  LFVTRLEAV---TSNHDGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPLAE 84

Query: 328 MQASVLEVVIKDKDLVK---DDFVGIVRFDINEVPLRVPPDSPLAPEWYRLEDKK 379
            +     + +  +   +       G +R  ++   + +        +W  L+   
Sbjct: 85  EELPTATLTLTLRTCDRFSRHSVAGELRLGLDGTSVPLGAA-----QWGELKTSG 134

>d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9606]} Length = 138

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin XIII
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.4 bits (96), Expect = 7e-05
 Identities = 15/115 (13%), Positives = 35/115 (30%), Gaps = 12/115 (10%)

Query: 5   KLGVQVVGAHNLLPKDGKGSSSAFVELYFDGQ----RFRTTIKENDLNPVWNESFYFNIS 60
           +L V  + A      +  G    +V+     +      +T +K+  L+  W E     ++
Sbjct: 27  ELFVTRLEAVTS---NHDGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPLA 83

Query: 61  DASKLHYLT-LEAYIYNNIGDTNSRSFLGKVCLTGNSFVPLSDSVVLHYPLEKRG 114
           +         L     +     +     G++ L  +    +         L+  G
Sbjct: 84  EEELPTATLTLTLRTCDRFSRHS---VAGELRLGLDG-TSVPLGAAQWGELKTSG 134

>d2zkmx2 b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 122

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Phospholipase C-beta-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.9 bits (111), Expect = 8e-07
 Identities = 27/128 (21%), Positives = 42/128 (32%), Gaps = 24/128 (18%)

Query: 6   LGVQVVGAHNLLPKDGKGSSSAFVELYFDG--------QRFRTTIKENDLNPVWNE-SFY 56
           L + V+    L  +        +VE+   G         R + +   N +NPVW E  F 
Sbjct: 3   LSITVISGQFLSERS----VRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFV 58

Query: 57  FNISDASKLHYLTLEAYIYNNIGDTNSRSFLGKVCLTGNSFVPLSDSVVLH----YPLEK 112
           F      +L  L +      N        FLG   +  N+       + LH     PL  
Sbjct: 59  FEKILMPELASLRVAVMEEGN-------KFLGHRIIPINALNSGYHHLCLHSESNMPLTM 111

Query: 113 RGIFSHVR 120
             +F  + 
Sbjct: 112 PALFIFLE 119

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	1005
d2ep6a1	126	Multiple C2 and transmembrane domain-containing pr	99.85
d2ep6a1	126	Multiple C2 and transmembrane domain-containing pr	99.84
d1wfja_	136	C2 domain protein At1g63220 {Thale cress (Arabidop	99.8
d1wfja_	136	C2 domain protein At1g63220 {Thale cress (Arabidop	99.8
d1rlwa_	126	Domain from cytosolic phospholipase A2 {Human (Hom	99.77
d1gmia_	136	Domain from protein kinase C epsilon {Rat (Rattus	99.75
d1rlwa_	126	Domain from cytosolic phospholipase A2 {Human (Hom	99.74
d2nq3a1	133	E3 ubiquitin-protein ligase Itchy {Human (Homo sap	99.74
d1gmia_	136	Domain from protein kinase C epsilon {Rat (Rattus	99.73
d1qasa2	131	PI-specific phospholipase C isozyme D1 (PLC-D1), C	99.72
d1a25a_	132	C2 domain from protein kinase c (beta) {Rat (Rattu	99.71
d1qasa2	131	PI-specific phospholipase C isozyme D1 (PLC-D1), C	99.71
d1a25a_	132	C2 domain from protein kinase c (beta) {Rat (Rattu	99.71
d1dqva1	130	Synaptotagmin III {Rat (Rattus norvegicus) [TaxId:	99.71
d2cjta1	128	Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId:	99.7
d2nq3a1	133	E3 ubiquitin-protein ligase Itchy {Human (Homo sap	99.69
d1rh8a_	142	Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]}	99.69
d2bwqa1	125	Regulating synaptic membrane exocytosis protein, r	99.68
d1rsya_	143	Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10	99.68
d2cjta1	128	Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId:	99.66
d1rsya_	143	Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10	99.65
d1dqva1	130	Synaptotagmin III {Rat (Rattus norvegicus) [TaxId:	99.64
d1rh8a_	142	Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]}	99.63
d1ugka_	138	Synaptotagmin IV {Human (Homo sapiens) [TaxId: 960	99.62
d1wfma_	138	Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9	99.61
d1wfma_	138	Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9	99.59
d1w15a_	138	Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId:	99.59
d1w15a_	138	Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId:	99.59
d2bwqa1	125	Regulating synaptic membrane exocytosis protein, r	99.59
d2cm5a1	137	C2b-domain of rabphilin {Rat (Rattus norvegicus) [	99.58
d1uowa_	157	Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10	99.58
d2cm5a1	137	C2b-domain of rabphilin {Rat (Rattus norvegicus) [	99.56
d1ugka_	138	Synaptotagmin IV {Human (Homo sapiens) [TaxId: 960	99.54
d1bdya_	123	Domain from protein kinase C delta {Rat (Rattus no	99.53
d1uowa_	157	Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10	99.52
d1bdya_	123	Domain from protein kinase C delta {Rat (Rattus no	99.49
d1dqva2	145	Synaptotagmin III {Rat (Rattus norvegicus) [TaxId:	99.48
d1dqva2	145	Synaptotagmin III {Rat (Rattus norvegicus) [TaxId:	99.46
d2zkmx2	122	Phospholipase C-beta-2 {Human (Homo sapiens) [TaxI	99.4
d2zkmx2	122	Phospholipase C-beta-2 {Human (Homo sapiens) [TaxI	99.34
d1e7ua2	174	Phoshoinositide 3-kinase (PI3K) {Pig (Sus scrofa)	92.98
d1e7ua2	174	Phoshoinositide 3-kinase (PI3K) {Pig (Sus scrofa)	89.56

>d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=1.9e-21  Score=180.44  Aligned_cols=122  Identities=29%  Similarity=0.465  Sum_probs=108.0

Q ss_pred             CcceEEEEEEEEecCCCCCCCCCCCCCCCcEEEEEECCEEEEeeeccCCCCceeccEEEEEEeCCCceEEEEEEeCCCcC
Q 045058          593 PSIGILELGILNAVGLHPMKTRDGRGTSDTYCVAKYGHKWVRTRTLVDNLSPKYNEQYTWEVFDPATVLTVGVFDNSQLG  672 (1005)
Q Consensus       593 ~~~g~l~v~i~~a~~L~~~~~~~~~~~~dpyv~~~~g~~~~~T~~~~~t~nP~wne~f~~~v~~~~~~l~i~v~d~~~~~  672 (1005)
                      .++|.|+|+|++|+||+++   +..|.+||||++++|++.++|+++.+|.||+|||.|.|.+.++...|.|+|||++.++
T Consensus         3 ~~~G~L~V~v~~A~~L~~~---d~~g~~Dpyv~v~~~~~~~~T~~~~~t~nP~wne~f~f~v~~~~~~L~i~V~d~~~~~   79 (126)
T d2ep6a1           3 KDVGILQVKVLKAADLLAA---DFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFPIKDIHDVLEVTVFDEDGDK   79 (126)
T ss_dssp             CCSEEEEEEEEEEESCCCS---SSSSCCCEEEEEEETTEEEECCCCSSCSSCCCCEEEEEEESCTTCEEEEEEEEEETTE
T ss_pred             CccEEEEEEEEEeECCCCC---CCCCCcCeEEEEEcCCeEEEEEeeCCceeEEEEEEEEEEEeccCceeEEEEEEccCCc
Confidence            4679999999999999965   4578999999999999999999999999999999999999998899999999998766


Q ss_pred             CCCCCCCCcccEEEEEEcccccCCCEEeeeEeeeecCCCCCceeeEEEEEEEEe
Q 045058          673 EKSNGNKDLKIGKVRIRISTLETGRIYTHSYPLLVLHPTGVKKMGELHLAIRFS  726 (1005)
Q Consensus       673 ~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~G~i~l~~~~~  726 (1005)
                            +|++||++.|+|+++..+.  .+||.|......+. ..|+|+|+++|.
T Consensus        80 ------~d~~lG~~~i~l~~l~~~~--~~~~~l~~~~~~~~-~~G~i~l~~~~i  124 (126)
T d2ep6a1          80 ------PPDFLGKVAIPLLSIRDGQ--PNCYVLKNKDLEQA-FKGVIYLEMDLI  124 (126)
T ss_dssp             ------EEEECCBCEEEGGGCCSSC--CEECCCBCSCTTSC-CSSEEEEEEEEE
T ss_pred             ------CcceEEEEEEEHHHCCCCC--ceEEEccccCCCCc-eeEEEEEEEEEE
Confidence                  7899999999999998876  58999976555443 359999999874

>d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=5.7e-21  Score=177.15  Aligned_cols=121  Identities=29%  Similarity=0.393  Sum_probs=107.0

Q ss_pred             CcEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEeeccccCCCCCCceeeEEEEEeccCccccceEEEEEEEeCCCCCC
Q 045058            3 NLKLGVQVVGAHNLLPKDGKGSSSAFVELYFDGQRFRTTIKENDLNPVWNESFYFNISDASKLHYLTLEAYIYNNIGDTN   82 (1005)
Q Consensus         3 ~~~l~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~~~~   82 (1005)
                      -|.|+|+|++|+||+.++..|.+||||+|++++++++|+++++|.||+|||+|.|.+.+..    ..|.|+|||++. .+
T Consensus         5 ~G~L~V~v~~A~~L~~~d~~g~~Dpyv~v~~~~~~~~T~~~~~t~nP~wne~f~f~v~~~~----~~L~i~V~d~~~-~~   79 (126)
T d2ep6a1           5 VGILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFPIKDIH----DVLEVTVFDEDG-DK   79 (126)
T ss_dssp             SEEEEEEEEEEESCCCSSSSSCCCEEEEEEETTEEEECCCCSSCSSCCCCEEEEEEESCTT----CEEEEEEEEEET-TE
T ss_pred             cEEEEEEEEEeECCCCCCCCCCcCeEEEEEcCCeEEEEEeeCCceeEEEEEEEEEEEeccC----ceeEEEEEEccC-Cc
Confidence            3899999999999999999999999999999999999999999999999999999997654    489999999854 55


Q ss_pred             CCcccEEEEEeCCcccCCCCceeeeEecccCCCcceeeeEEEEEEEEec
Q 045058           83 SRSFLGKVCLTGNSFVPLSDSVVLHYPLEKRGIFSHVRGELGLKVYITD  131 (1005)
Q Consensus        83 ~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~~~  131 (1005)
                      +|++||++.|+|.++....   ..|+.|......++.+|+|+|++.+..
T Consensus        80 ~d~~lG~~~i~l~~l~~~~---~~~~~l~~~~~~~~~~G~i~l~~~~i~  125 (126)
T d2ep6a1          80 PPDFLGKVAIPLLSIRDGQ---PNCYVLKNKDLEQAFKGVIYLEMDLIY  125 (126)
T ss_dssp             EEEECCBCEEEGGGCCSSC---CEECCCBCSCTTSCCSSEEEEEEEEEE
T ss_pred             CcceEEEEEEEHHHCCCCC---ceEEEccccCCCCceeEEEEEEEEEEE
Confidence            7899999999999986543   369999877766778999999998764

>d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain protein At1g63220
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.80  E-value=1.4e-19  Score=170.18  Aligned_cols=121  Identities=21%  Similarity=0.294  Sum_probs=104.8

Q ss_pred             CcEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEeeccccC-CCCCCceeeEEEEEeccCccccceEEEEEEEeCCCCC
Q 045058            3 NLKLGVQVVGAHNLLPKDGKGSSSAFVELYFDGQRFRTTIKE-NDLNPVWNESFYFNISDASKLHYLTLEAYIYNNIGDT   81 (1005)
Q Consensus         3 ~~~l~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~T~v~~-~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~~~   81 (1005)
                      .|.|+|+|++|++|+.++..|.+||||++++++++++|++++ +++||+|||+|.|.+.+..    ..|.|+|||++. .
T Consensus         9 ~G~L~V~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~t~~~~~~~~nP~Wne~f~f~v~~~~----~~L~v~V~d~d~-~   83 (136)
T d1wfja_           9 HGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSEGT----TELKAKIFDKDV-G   83 (136)
T ss_dssp             EEEEEEEEEEEEECSSCCSSCSSCCCEEEESSSCEEECCCCTTCCSSCEEEEEEEEEEESSC----CEEEEEECCSSS-C
T ss_pred             cEEEEEEEEEeeCCCCCCCCCCCCccEEEEEeeeeEEEEEEecCCCcEEEeeEEEEEEcCcc----ceEEEEEEEecC-C
Confidence            479999999999999999999999999999999999999876 6899999999999997644    469999999954 5


Q ss_pred             CCCcccEEEEEeCCcccCCCCceeeeEecccCCCcceeeeEEEEEEEEec
Q 045058           82 NSRSFLGKVCLTGNSFVPLSDSVVLHYPLEKRGIFSHVRGELGLKVYITD  131 (1005)
Q Consensus        82 ~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~~~  131 (1005)
                      ++|++||++.|+|.++...+.....|++|...+   +.+|+|++++.|.+
T Consensus        84 ~~d~~iG~~~i~L~~l~~~~~~~~~~~~l~~~~---~~~G~i~l~l~~~p  130 (136)
T d1wfja_          84 TEDDAVGEATIPLEPVFVEGSIPPTAYNVVKDE---EYKGEIWVALSFKP  130 (136)
T ss_dssp             TTTCCSEEEEEESHHHHHHSEEEEEEEEEEETT---EEEEEEEEEEEEEE
T ss_pred             CCCCEEEEEEEEhHHhcccCCcCcEEEEecCCC---ccCEEEEEEEEEEe
Confidence            589999999999999866555556799987543   67899999999986

>d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain protein At1g63220
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.80  E-value=1.9e-19  Score=169.21  Aligned_cols=123  Identities=22%  Similarity=0.328  Sum_probs=106.0

Q ss_pred             CcceEEEEEEEEecCCCCCCCCCCCCCCCcEEEEEECCEEEEeeecc-CCCCceeccEEEEEEeCCCceEEEEEEeCCCc
Q 045058          593 PSIGILELGILNAVGLHPMKTRDGRGTSDTYCVAKYGHKWVRTRTLV-DNLSPKYNEQYTWEVFDPATVLTVGVFDNSQL  671 (1005)
Q Consensus       593 ~~~g~l~v~i~~a~~L~~~~~~~~~~~~dpyv~~~~g~~~~~T~~~~-~t~nP~wne~f~~~v~~~~~~l~i~v~d~~~~  671 (1005)
                      .+.|.|+|+|++|++|+..   +..|++||||++++++...+|++++ +++||+|||.|.|.+.++...|.|+|||+|.+
T Consensus         7 ~p~G~L~V~v~~a~~L~~~---d~~g~~Dpyv~v~~~~~~~~t~~~~~~~~nP~Wne~f~f~v~~~~~~L~v~V~d~d~~   83 (136)
T d1wfja_           7 GPHGTLEVVLVSAKGLEDA---DFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSEGTTELKAKIFDKDVG   83 (136)
T ss_dssp             CCEEEEEEEEEEEEECSSC---CSSCSSCCCEEEESSSCEEECCCCTTCCSSCEEEEEEEEEEESSCCEEEEEECCSSSC
T ss_pred             CCcEEEEEEEEEeeCCCCC---CCCCCCCccEEEEEeeeeEEEEEEecCCCcEEEeeEEEEEEcCccceEEEEEEEecCC
Confidence            4679999999999999964   4578999999999999999999987 58999999999999998888899999999977


Q ss_pred             CCCCCCCCCcccEEEEEEcccccC-CCEEeeeEeeeecCCCCCceeeEEEEEEEEeec
Q 045058          672 GEKSNGNKDLKIGKVRIRISTLET-GRIYTHSYPLLVLHPTGVKKMGELHLAIRFSCT  728 (1005)
Q Consensus       672 ~~~~~~~~d~~lG~~~i~l~~l~~-~~~~~~~~~L~~~~~~~~~~~G~i~l~~~~~~~  728 (1005)
                      +      +|++||.+.|+|.++.. +.....||++..    ..+..|+|+|.++|.+.
T Consensus        84 ~------~d~~iG~~~i~L~~l~~~~~~~~~~~~l~~----~~~~~G~i~l~l~~~p~  131 (136)
T d1wfja_          84 T------EDDAVGEATIPLEPVFVEGSIPPTAYNVVK----DEEYKGEIWVALSFKPS  131 (136)
T ss_dssp             T------TTCCSEEEEEESHHHHHHSEEEEEEEEEEE----TTEEEEEEEEEEEEEEC
T ss_pred             C------CCCEEEEEEEEhHHhcccCCcCcEEEEecC----CCccCEEEEEEEEEEeC
Confidence            6      89999999999999754 445578999863    22446999999999753

>d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from cytosolic phospholipase A2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=8.4e-19  Score=162.55  Aligned_cols=118  Identities=18%  Similarity=0.256  Sum_probs=101.5

Q ss_pred             ceEEEEEEEEecCCCCCCCCCCCCCCCcEEEEEECC---EEEEeeeccCCCCceeccEEEEEEeCC-CceEEEEEEeCCC
Q 045058          595 IGILELGILNAVGLHPMKTRDGRGTSDTYCVAKYGH---KWVRTRTLVDNLSPKYNEQYTWEVFDP-ATVLTVGVFDNSQ  670 (1005)
Q Consensus       595 ~g~l~v~i~~a~~L~~~~~~~~~~~~dpyv~~~~g~---~~~~T~~~~~t~nP~wne~f~~~v~~~-~~~l~i~v~d~~~  670 (1005)
                      .+.|+|+|++|+||+....+|..|.+||||++.+++   ++.||+++.++.||.|||+|.|.+.++ ...|.|+|||++.
T Consensus         2 s~~l~V~v~~a~~L~~~~~~d~~~~~Dpyv~v~l~~~~~~~~~T~~~~~t~nP~wne~f~f~i~~~~~~~L~v~V~d~d~   81 (126)
T d1rlwa_           2 SHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDANY   81 (126)
T ss_dssp             CEEEEEEEEEEESCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECTTSCCEEEEEEEECCS
T ss_pred             CcEEEEEEEEccCCCCccccccCCCCCcEEEEEECCcccceeEeeecCCCccceeceeeeecccCcccCcEEEEEEECCC
Confidence            378999999999999755445678899999999975   568999999999999999999999875 5689999999975


Q ss_pred             cCCCCCCCCCcccEEEEEEcccccCCCEEeeeEeeeecCCCCCceeeEEEEEEEE
Q 045058          671 LGEKSNGNKDLKIGKVRIRISTLETGRIYTHSYPLLVLHPTGVKKMGELHLAIRF  725 (1005)
Q Consensus       671 ~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~G~i~l~~~~  725 (1005)
                      .       +|++||.+.|+|++|..+.....||+|.     +. ..|+|++.+++
T Consensus        82 ~-------~d~~lG~~~i~L~~l~~~~~~~~~~~L~-----~~-~~g~i~~~l~~  123 (126)
T d1rlwa_          82 V-------MDETLGTATFTVSSMKVGEKKEVPFIFN-----QV-TEMVLEMSLEV  123 (126)
T ss_dssp             S-------CCEEEEEEEEEGGGSCTTCEEEEEEEET-----TT-EEEEEEEEEEC
T ss_pred             C-------CCCeEEEEEEEHHHccCCCeEEEEEEcc-----CC-CeEEEEEEEEE
Confidence            3       5899999999999999999889999994     22 34888888875

>d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C epsilon
species: Rat (Rattus rattus) [TaxId: 10117]

Probab=99.75  E-value=6.5e-18  Score=157.99  Aligned_cols=119  Identities=22%  Similarity=0.308  Sum_probs=101.1

Q ss_pred             ceEEEEEEEEecCCCCCCC--------CCCCCCCCcEEEEEECCEE-EEeeeccCCCCceeccEEEEEEeCCCceEEEEE
Q 045058          595 IGILELGILNAVGLHPMKT--------RDGRGTSDTYCVAKYGHKW-VRTRTLVDNLSPKYNEQYTWEVFDPATVLTVGV  665 (1005)
Q Consensus       595 ~g~l~v~i~~a~~L~~~~~--------~~~~~~~dpyv~~~~g~~~-~~T~~~~~t~nP~wne~f~~~v~~~~~~l~i~v  665 (1005)
                      .|.|+|+|++|+||++.+.        +...+.+||||++++|++. .+|+++.++.||+|||+|.|++.+. ..|.|+|
T Consensus         5 ~G~L~v~I~~A~~L~~~~~~~~~~~~~~~~~~~~DPYv~v~l~~~~~~~T~~~~~t~~P~Wne~f~f~v~~~-~~l~i~V   83 (136)
T d1gmia_           5 NGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAWHDEFVTDVCNG-RKIELAV   83 (136)
T ss_dssp             EEEEEEEEEEEESCCCCHHHHCC-CCSSCCCCCCCEEEEEEETTEEEEECCCCSSCSSCEEEEEEEEEEEEE-CEEEEEE
T ss_pred             EEEEEEEEEEeECCCcccccccccccccCCCCCcCcEEEEEeCCCcCcEeeEEcCCCCccCccEEEEEEecC-CceEEEE
Confidence            4999999999999997541        2246678999999999876 5899999999999999999999764 6899999


Q ss_pred             EeCCCcCCCCCCCCCcccEEEEEEcccccCC--CEEeeeEeeeecCCCCCceeeEEEEEEEEeec
Q 045058          666 FDNSQLGEKSNGNKDLKIGKVRIRISTLETG--RIYTHSYPLLVLHPTGVKKMGELHLAIRFSCT  728 (1005)
Q Consensus       666 ~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~--~~~~~~~~L~~~~~~~~~~~G~i~l~~~~~~~  728 (1005)
                      ||++.++      +|++||++.|+|+++..+  ...+.||+|.        ..|+|++.++++++
T Consensus        84 ~d~~~~~------~d~~iG~~~i~l~~l~~~~~~~~~~w~~L~--------p~G~v~l~v~~~~~  134 (136)
T d1gmia_          84 FHDAPIG------YDDFVANCTIQFEELLQNGSRHFEDWIDLE--------PEGKVYVIIDLSGS  134 (136)
T ss_dssp             EECCSSS------SCEEEEEEEEEHHHHTSTTCSEEEEEEECB--------SSCEEEEEEEEEEE
T ss_pred             EEecCCC------CceeEEEEEEEHHHhhhcCCcceeEEEeCC--------CCcEEEEEEEEEeC
Confidence            9999776      899999999999998654  3567899995        24999999998764

>d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from cytosolic phospholipase A2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=3.3e-18  Score=158.47  Aligned_cols=119  Identities=24%  Similarity=0.291  Sum_probs=98.4

Q ss_pred             CCcEEEEEEEEeecCCCC---CCCCCCCcEEEEEECC---eEeeccccCCCCCCceeeEEEEEeccCccccceEEEEEEE
Q 045058            2 RNLKLGVQVVGAHNLLPK---DGKGSSSAFVELYFDG---QRFRTTIKENDLNPVWNESFYFNISDASKLHYLTLEAYIY   75 (1005)
Q Consensus         2 ~~~~l~V~v~~a~~L~~~---d~~g~~dpyv~v~~~~---~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~   75 (1005)
                      ++++|+|+|++|+||+..   |..|.+||||++++++   ++++|+++.++.||+|||+|.|.+.+..   ...|.|+||
T Consensus         1 ss~~l~V~v~~a~~L~~~~~~d~~~~~Dpyv~v~l~~~~~~~~~T~~~~~t~nP~wne~f~f~i~~~~---~~~L~v~V~   77 (126)
T d1rlwa_           1 SSHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQ---ENVLEITLM   77 (126)
T ss_dssp             CCEEEEEEEEEEESCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECTTS---CCEEEEEEE
T ss_pred             CCcEEEEEEEEccCCCCccccccCCCCCcEEEEEECCcccceeEeeecCCCccceeceeeeecccCcc---cCcEEEEEE
Confidence            468999999999999864   3467899999999975   5789999999999999999999996543   367999999


Q ss_pred             eCCCCCCCCcccEEEEEeCCcccCCCCceeeeEecccCCCcceeeeEEEEEEEEec
Q 045058           76 NNIGDTNSRSFLGKVCLTGNSFVPLSDSVVLHYPLEKRGIFSHVRGELGLKVYITD  131 (1005)
Q Consensus        76 d~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~~~  131 (1005)
                      |++.  .+|++||++.++|.++..+. ....||+|.+.+     +|+|++++.+.+
T Consensus        78 d~d~--~~d~~lG~~~i~L~~l~~~~-~~~~~~~L~~~~-----~g~i~~~l~~~~  125 (126)
T d1rlwa_          78 DANY--VMDETLGTATFTVSSMKVGE-KKEVPFIFNQVT-----EMVLEMSLEVAS  125 (126)
T ss_dssp             ECCS--SCCEEEEEEEEEGGGSCTTC-EEEEEEEETTTE-----EEEEEEEEECCC
T ss_pred             ECCC--CCCCeEEEEEEEHHHccCCC-eEEEEEEccCCC-----eEEEEEEEEEEe
Confidence            9853  36899999999999987654 446899997653     588888887643

>d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: E3 ubiquitin-protein ligase Itchy
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=9.2e-18  Score=156.17  Aligned_cols=121  Identities=20%  Similarity=0.222  Sum_probs=98.0

Q ss_pred             cEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEeeccccCCCCCCceeeEEEEEeccCccccceEEEEEEEeCCCCCCC
Q 045058            4 LKLGVQVVGAHNLLPKDGKGSSSAFVELYFDGQRFRTTIKENDLNPVWNESFYFNISDASKLHYLTLEAYIYNNIGDTNS   83 (1005)
Q Consensus         4 ~~l~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~~~~~   83 (1005)
                      ..|.|+|++|++|+.++..+.+||||+|.++++.++|++++++.||+|||.|.|.+...     ..|.|+|||++ ..++
T Consensus         6 ~~L~v~v~~A~~~~~~~~~~~~dpyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~-----~~l~~~V~d~d-~~~~   79 (133)
T d2nq3a1           6 SQLQITVISAKLKENKKNWFGPSPYVEVTVDGQSKKTEKCNNTNSPKWKQPLTVIVTPV-----SKLHFRVWSHQ-TLKS   79 (133)
T ss_dssp             EEEEEEEEEEEECCCC--CCCCCEEEEEEETTEEEECCCCSSCSSCEEEEEEEEEECTT-----CEEEEEEEECC-SSSC
T ss_pred             eEEEEEEEEeECCCcCCCCCCcCeEEEEEECCeEEeeEEEEecccEEEcceEEEEEEec-----ceeEEEEEEcc-CCCC
Confidence            78999999999999988888999999999999999999999999999999999998643     37999999995 4568


Q ss_pred             CcccEEEEEeCCcccCC--C--CceeeeEecccCCCcceeeeEEEEEEEEe
Q 045058           84 RSFLGKVCLTGNSFVPL--S--DSVVLHYPLEKRGIFSHVRGELGLKVYIT  130 (1005)
Q Consensus        84 d~~lG~~~i~l~~l~~~--~--~~~~~w~~L~~~~~~~~~~G~i~l~~~~~  130 (1005)
                      |++||++.++|.++...  +  .....|+.|..........|+|.+.+...
T Consensus        80 d~~iG~~~i~L~~l~~~~~~~~~~~~~~l~l~~~~~~~~~~G~L~v~l~~~  130 (133)
T d2nq3a1          80 DVLLGTAALDIYETLKSNNMKLEEVVVTLQLGGDKEPTETIGDLSICLDGL  130 (133)
T ss_dssp             CEEEEEEEEEHHHHHHHTTTEESSEEEEEEEEESSCTTSEEEEEEEEEESE
T ss_pred             CceEEEEEEEHHHhhhhcCCceeeEEEEEecCCCCCCceEEEEEEEEEeeE
Confidence            99999999999987432  2  22223455655555556789999888543

>d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C epsilon
species: Rat (Rattus rattus) [TaxId: 10117]

Probab=99.73  E-value=9.4e-18  Score=156.90  Aligned_cols=116  Identities=16%  Similarity=0.278  Sum_probs=98.4

Q ss_pred             CcEEEEEEEEeecCCCCC-----------CCCCCCcEEEEEECCeE-eeccccCCCCCCceeeEEEEEeccCccccceEE
Q 045058            3 NLKLGVQVVGAHNLLPKD-----------GKGSSSAFVELYFDGQR-FRTTIKENDLNPVWNESFYFNISDASKLHYLTL   70 (1005)
Q Consensus         3 ~~~l~V~v~~a~~L~~~d-----------~~g~~dpyv~v~~~~~~-~~T~v~~~t~nP~Wne~f~f~v~~~~~~~~~~l   70 (1005)
                      +|.|+|+|++|++|++++           ..+.+||||+|++++++ .+|+++.++.||+|||+|.|.+.+.     ..|
T Consensus         5 ~G~L~v~I~~A~~L~~~~~~~~~~~~~~~~~~~~DPYv~v~l~~~~~~~T~~~~~t~~P~Wne~f~f~v~~~-----~~l   79 (136)
T d1gmia_           5 NGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAWHDEFVTDVCNG-----RKI   79 (136)
T ss_dssp             EEEEEEEEEEEESCCCCHHHHCC-CCSSCCCCCCCEEEEEEETTEEEEECCCCSSCSSCEEEEEEEEEEEEE-----CEE
T ss_pred             EEEEEEEEEEeECCCcccccccccccccCCCCCcCcEEEEEeCCCcCcEeeEEcCCCCccCccEEEEEEecC-----Cce
Confidence            589999999999998753           46779999999999875 6899999999999999999999653     479


Q ss_pred             EEEEEeCCCCCCCCcccEEEEEeCCcccCCC-CceeeeEecccCCCcceeeeEEEEEEEEec
Q 045058           71 EAYIYNNIGDTNSRSFLGKVCLTGNSFVPLS-DSVVLHYPLEKRGIFSHVRGELGLKVYITD  131 (1005)
Q Consensus        71 ~v~V~d~~~~~~~d~~lG~~~i~l~~l~~~~-~~~~~w~~L~~~~~~~~~~G~i~l~~~~~~  131 (1005)
                      .|+|||++ ..++|++||.+.|+|.++...+ ...+.|++|++       +|++++.+.+..
T Consensus        80 ~i~V~d~~-~~~~d~~iG~~~i~l~~l~~~~~~~~~~w~~L~p-------~G~v~l~v~~~~  133 (136)
T d1gmia_          80 ELAVFHDA-PIGYDDFVANCTIQFEELLQNGSRHFEDWIDLEP-------EGKVYVIIDLSG  133 (136)
T ss_dssp             EEEEEECC-SSSSCEEEEEEEEEHHHHTSTTCSEEEEEEECBS-------SCEEEEEEEEEE
T ss_pred             EEEEEEec-CCCCceeEEEEEEEHHHhhhcCCcceeEEEeCCC-------CcEEEEEEEEEe
Confidence            99999985 4568999999999999987654 44568999964       588999988765

>d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.72  E-value=2.7e-17  Score=152.85  Aligned_cols=119  Identities=18%  Similarity=0.272  Sum_probs=93.6

Q ss_pred             eEEEEEEEEecCCCCCCCCCCCCCCCcEEEEEE-----CCEEEEeeeccCC-CCceeccEEEEEEeCC-CceEEEEEEeC
Q 045058          596 GILELGILNAVGLHPMKTRDGRGTSDTYCVAKY-----GHKWVRTRTLVDN-LSPKYNEQYTWEVFDP-ATVLTVGVFDN  668 (1005)
Q Consensus       596 g~l~v~i~~a~~L~~~~~~~~~~~~dpyv~~~~-----g~~~~~T~~~~~t-~nP~wne~f~~~v~~~-~~~l~i~v~d~  668 (1005)
                      ..|+|+|++|++|+..+ .+..+.+||||++++     +....||++++++ +||.|||+|+|.+..+ ...|.|+|||+
T Consensus         4 ~~l~V~Vi~a~~L~~~~-~~~~~~~DPyV~v~l~g~~~~~~~~~T~~v~~~~~nP~wne~f~f~~~~~~~~~L~~~V~D~   82 (131)
T d1qasa2           4 ERLRVRIISGQQLPKVN-KNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEFEVTVPDLALVRFMVEDY   82 (131)
T ss_dssp             EEEEEEEEEEESCCCCC------CCCEEEEEEEESSTTTCEEEECCCCSSCSSSCEEEEEEEEEESCGGGCEEEEEEEEC
T ss_pred             EEEEEEEEEeeCCCCCC-CCCCCCcCeEEEEEEccCCCCcEEEEEEEEecccCCceEEEEEEEEEEcchhceEEEEEEEe
Confidence            47999999999997653 356788999999998     3567899998755 7999999999998764 56899999999


Q ss_pred             CCcCCCCCCCCCcccEEEEEEcccccCCCEEeeeEeeeecCCCCCceeeEEEEEEEE
Q 045058          669 SQLGEKSNGNKDLKIGKVRIRISTLETGRIYTHSYPLLVLHPTGVKKMGELHLAIRF  725 (1005)
Q Consensus       669 ~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~G~i~l~~~~  725 (1005)
                      |.++      +|++||.+.|||+.+..|.   +|++|....+... ..++|.+.+++
T Consensus        83 d~~~------~d~~iG~~~i~l~~l~~g~---~~~~L~~~~g~~~-~~~~L~v~i~~  129 (131)
T d1qasa2          83 DSSS------KNDFIGQSTIPWNSLKQGY---RHVHLLSKNGDQH-PSATLFVKISI  129 (131)
T ss_dssp             CTTT------CCEEEEEEEEEGGGBCCEE---EEEEEECTTSCEE-EEEEEEEEEEE
T ss_pred             cCCC------CCcEEEEEEEEEeccCCCC---EEEECCCCCcCCC-CCCEEEEEEEE
Confidence            9776      8999999999999998763   6999975443322 34777777765

>d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain from protein kinase c (beta)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.71  E-value=2.2e-17  Score=153.98  Aligned_cols=107  Identities=26%  Similarity=0.370  Sum_probs=91.1

Q ss_pred             CCcEEEEEEEEeecCCCCCCCCCCCcEEEEEE-----CCeEeeccccCCCCCCceeeEEEEEeccCccccceEEEEEEEe
Q 045058            2 RNLKLGVQVVGAHNLLPKDGKGSSSAFVELYF-----DGQRFRTTIKENDLNPVWNESFYFNISDASKLHYLTLEAYIYN   76 (1005)
Q Consensus         2 ~~~~l~V~v~~a~~L~~~d~~g~~dpyv~v~~-----~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d   76 (1005)
                      .++.|.|+|++|+||+.+|..|.+||||+|++     +..+++|+++++|.||+|||+|.|.+...+  ....|.|.|||
T Consensus        13 ~~~~L~V~V~~a~~L~~~d~~g~~DpYv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~--~~~~L~i~V~d   90 (132)
T d1a25a_          13 DREVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKESD--KDRRLSVEIWD   90 (132)
T ss_dssp             SSSEEEEEEEEEESCCCCSTTSCCCEEEEEEEESCTTCSSCEECCCCSSCSSCEEEEEEEEECCSGG--GGCEEEEEEEE
T ss_pred             cCCEEEEEEEeeeCCCCCCCCCCcCeEEEEEEccCCCCccccEEeeecCCCCCccceEEEEEeEccc--cCCEEeEEEEe
Confidence            35789999999999999999999999999998     445789999999999999999999986543  23579999999


Q ss_pred             CCCCCCCCcccEEEEEeCCcccCCCCceeeeEecccC
Q 045058           77 NIGDTNSRSFLGKVCLTGNSFVPLSDSVVLHYPLEKR  113 (1005)
Q Consensus        77 ~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~  113 (1005)
                      ++. .++|++||++.|+|.++...+  ...||+|.+.
T Consensus        91 ~d~-~~~d~~iG~~~i~l~~l~~~~--~~~W~~L~~~  124 (132)
T d1a25a_          91 WDL-TSRNDFMGSLSFGISELQKAG--VDGWFKLLSQ  124 (132)
T ss_dssp             CCS-SSCCEEEEEEEEEHHHHTTCC--EEEEEECBCH
T ss_pred             cCC-CCCCcEeEEEEEeHHHcCCCC--CCeEEECCCC
Confidence            954 568999999999999986543  3579999764

>d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.71  E-value=9.9e-17  Score=148.97  Aligned_cols=119  Identities=18%  Similarity=0.250  Sum_probs=93.1

Q ss_pred             cEEEEEEEEeecCCC--CCCCCCCCcEEEEEEC-----CeEeeccccC-CCCCCceeeEEEEEeccCccccceEEEEEEE
Q 045058            4 LKLGVQVVGAHNLLP--KDGKGSSSAFVELYFD-----GQRFRTTIKE-NDLNPVWNESFYFNISDASKLHYLTLEAYIY   75 (1005)
Q Consensus         4 ~~l~V~v~~a~~L~~--~d~~g~~dpyv~v~~~-----~~~~~T~v~~-~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~   75 (1005)
                      .+|+|+|++|++|+.  ++.+|.+||||+|++.     .++++|++++ +++||+|||+|.|.+..++   ...|.|+||
T Consensus         4 ~~l~V~Vi~a~~L~~~~~~~~~~~DPyV~v~l~g~~~~~~~~~T~~v~~~~~nP~wne~f~f~~~~~~---~~~L~~~V~   80 (131)
T d1qasa2           4 ERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEFEVTVPD---LALVRFMVE   80 (131)
T ss_dssp             EEEEEEEEEEESCCCCC-----CCCEEEEEEEESSTTTCEEEECCCCSSCSSSCEEEEEEEEEESCGG---GCEEEEEEE
T ss_pred             EEEEEEEEEeeCCCCCCCCCCCCcCeEEEEEEccCCCCcEEEEEEEEecccCCceEEEEEEEEEEcch---hceEEEEEE
Confidence            579999999999975  4567889999999983     4678999765 5589999999999986544   257999999


Q ss_pred             eCCCCCCCCcccEEEEEeCCcccCCCCceeeeEecccCCCcceeeeEEEEEEEEe
Q 045058           76 NNIGDTNSRSFLGKVCLTGNSFVPLSDSVVLHYPLEKRGIFSHVRGELGLKVYIT  130 (1005)
Q Consensus        76 d~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~~  130 (1005)
                      |++ ..++|++||++.|+|.++..+    ..|++|....+.....+.|.+++.+.
T Consensus        81 D~d-~~~~d~~iG~~~i~l~~l~~g----~~~~~L~~~~g~~~~~~~L~v~i~~~  130 (131)
T d1qasa2          81 DYD-SSSKNDFIGQSTIPWNSLKQG----YRHVHLLSKNGDQHPSATLFVKISIQ  130 (131)
T ss_dssp             ECC-TTTCCEEEEEEEEEGGGBCCE----EEEEEEECTTSCEEEEEEEEEEEEEE
T ss_pred             Eec-CCCCCcEEEEEEEEEeccCCC----CEEEECCCCCcCCCCCCEEEEEEEEE
Confidence            996 456899999999999998543    36899987766555678888888764

>d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain from protein kinase c (beta)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.71  E-value=3.4e-17  Score=152.65  Aligned_cols=102  Identities=25%  Similarity=0.389  Sum_probs=89.7

Q ss_pred             eEEEEEEEEecCCCCCCCCCCCCCCCcEEEEEE-----CCEEEEeeeccCCCCceeccEEEEEEeCC--CceEEEEEEeC
Q 045058          596 GILELGILNAVGLHPMKTRDGRGTSDTYCVAKY-----GHKWVRTRTLVDNLSPKYNEQYTWEVFDP--ATVLTVGVFDN  668 (1005)
Q Consensus       596 g~l~v~i~~a~~L~~~~~~~~~~~~dpyv~~~~-----g~~~~~T~~~~~t~nP~wne~f~~~v~~~--~~~l~i~v~d~  668 (1005)
                      +.|.|+|++|+||++++   ..|.+||||++.+     +....+|+++.+|.||+|||.|.|++..+  ...|.|+|||+
T Consensus        15 ~~L~V~V~~a~~L~~~d---~~g~~DpYv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~L~i~V~d~   91 (132)
T d1a25a_          15 EVLIVVVRDAKNLVPMD---PNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKESDKDRRLSVEIWDW   91 (132)
T ss_dssp             SEEEEEEEEEESCCCCS---TTSCCCEEEEEEEESCTTCSSCEECCCCSSCSSCEEEEEEEEECCSGGGGCEEEEEEEEC
T ss_pred             CEEEEEEEeeeCCCCCC---CCCCcCeEEEEEEccCCCCccccEEeeecCCCCCccceEEEEEeEccccCCEEeEEEEec
Confidence            78999999999999754   5788999999998     45578999999999999999999999764  45899999999


Q ss_pred             CCcCCCCCCCCCcccEEEEEEcccccCCCEEeeeEeeee
Q 045058          669 SQLGEKSNGNKDLKIGKVRIRISTLETGRIYTHSYPLLV  707 (1005)
Q Consensus       669 ~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~  707 (1005)
                      |.++      +|++||.+.|+|+++..+. .++||+|..
T Consensus        92 d~~~------~d~~iG~~~i~l~~l~~~~-~~~W~~L~~  123 (132)
T d1a25a_          92 DLTS------RNDFMGSLSFGISELQKAG-VDGWFKLLS  123 (132)
T ss_dssp             CSSS------CCEEEEEEEEEHHHHTTCC-EEEEEECBC
T ss_pred             CCCC------CCcEeEEEEEeHHHcCCCC-CCeEEECCC
Confidence            9876      8999999999999998665 578999963

>d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.71  E-value=2.4e-17  Score=153.05  Aligned_cols=110  Identities=25%  Similarity=0.393  Sum_probs=90.8

Q ss_pred             CCcEEEEEEEEeecCCCCCCCCCCCcEEEEEEC---CeEeeccccCCCCCCceeeEEEEEeccCccccceEEEEEEEeCC
Q 045058            2 RNLKLGVQVVGAHNLLPKDGKGSSSAFVELYFD---GQRFRTTIKENDLNPVWNESFYFNISDASKLHYLTLEAYIYNNI   78 (1005)
Q Consensus         2 ~~~~l~V~v~~a~~L~~~d~~g~~dpyv~v~~~---~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~   78 (1005)
                      ..++|.|+|++|+||+.++..|.+||||+|++.   .++++|++++++.||+|||+|.|.+...+ +....|.|+|||++
T Consensus        16 ~~~~L~V~V~~a~~L~~~~~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~-~~~~~L~v~V~d~~   94 (130)
T d1dqva1          16 GSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPLAE-LAQRKLHFSVYDFD   94 (130)
T ss_dssp             SSCEEEEEEEEEECCCCCSTTSCCCEEEEEECTTSTTSCEECCCCCSCSSCEEEEEEEEECCGGG-GSSCCCEEEEEECC
T ss_pred             CCCEEEEEEEeeeCCccccCCCCcceEEEEEEccCCCceEeceeEcCCCCeeeeeEEEEEEchHH-cCCCeEEEEEEEcC
Confidence            357999999999999999999999999999983   45789999999999999999999986543 45567999999995


Q ss_pred             CCCCCCcccEEEEEeCCc-ccCCCCceeeeEecccC
Q 045058           79 GDTNSRSFLGKVCLTGNS-FVPLSDSVVLHYPLEKR  113 (1005)
Q Consensus        79 ~~~~~d~~lG~~~i~l~~-l~~~~~~~~~w~~L~~~  113 (1005)
                       ..++|++||++.|++.. +.........||+|.+.
T Consensus        95 -~~~~d~~iG~~~i~~~~~l~~~~~~~~~W~~L~~~  129 (130)
T d1dqva1          95 -RFSRHDLIGQVVLDNLLELAEQPPDRPLWRDILEG  129 (130)
T ss_dssp             -SSSCCCEEEEEECCCTTGGGSSCSSCCCCEECBCC
T ss_pred             -CCCCCceEEEEEECchhhhhcCCCCCcEEEecccC
Confidence             45689999999998644 44443344579999864

>d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Unc-13 homolog A
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.70  E-value=5.8e-17  Score=148.26  Aligned_cols=116  Identities=18%  Similarity=0.176  Sum_probs=92.8

Q ss_pred             eEEEEEEEEecCCCCCCCCCCCCCCCcEEEEEECCEEEEeeeccCCCCceeccEEEEEEeCCCceEEEEEEeCCCcCCCC
Q 045058          596 GILELGILNAVGLHPMKTRDGRGTSDTYCVAKYGHKWVRTRTLVDNLSPKYNEQYTWEVFDPATVLTVGVFDNSQLGEKS  675 (1005)
Q Consensus       596 g~l~v~i~~a~~L~~~~~~~~~~~~dpyv~~~~g~~~~~T~~~~~t~nP~wne~f~~~v~~~~~~l~i~v~d~~~~~~~~  675 (1005)
                      +.|.|+|.+|++|.+.      ++.||||++++|+...+|++++ +.||+|||.|.|++.++...|.|+|||++..    
T Consensus         2 ~~L~V~v~~a~~l~~~------~~~dpYv~l~~~~~k~~T~~~k-~~nP~Wne~f~f~v~~~~~~L~v~V~d~~~~----   70 (128)
T d2cjta1           2 SLLCVGVKKAKFDGAQ------EKFNTYVTLKVQNVKSTTIAVR-GSQPSWEQDFMFEINRLDLGLTVEVWNKGLI----   70 (128)
T ss_dssp             EEEEEEEEEEECSSCG------GGCEEEEEEEETTEEEECCCEE-SSSCEEEEEEEEEECCCSSEEEEEEEECCSS----
T ss_pred             eEEEEEEEEEECCCCC------CCcCeEEEEEeCCEEEEEEEec-CCCCeEEEEEEEeeccccceEEEEEEeCCCc----
Confidence            6899999999999964      3679999999999999999886 5699999999999999988999999999753    


Q ss_pred             CCCCCcccEEEEEEcccccCC--CEEeeeEeeeecCC--CC------CceeeEEEEEEEE
Q 045058          676 NGNKDLKIGKVRIRISTLETG--RIYTHSYPLLVLHP--TG------VKKMGELHLAIRF  725 (1005)
Q Consensus       676 ~~~~d~~lG~~~i~l~~l~~~--~~~~~~~~L~~~~~--~~------~~~~G~i~l~~~~  725 (1005)
                         +|++||++.|||+++...  .....||+|.....  .|      ....+.|.++++|
T Consensus        71 ---~d~~lG~~~I~L~~l~~~~~~~~~~W~~L~~~~~~~~gei~gt~~~~~~~~ll~~~~  127 (128)
T d2cjta1          71 ---WDTMVGTVWIPLRTIRQSNEEGPGEWLTLDSQAIMADSEICGTKDPTFHRILLDAHF  127 (128)
T ss_dssp             ---CEEEEEEEEEEGGGSCBCSSCCCCEEEECBC----------CCSCCCCCEEEEEEEE
T ss_pred             ---CCcceEEEEEEehhhccCCCCCCCeeEECCccccCCCCEEEeeecCCCcEEEEEEEc
Confidence               589999999999998643  34568999964321  11      1124677777776

>d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: E3 ubiquitin-protein ligase Itchy
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=8.2e-17  Score=149.64  Aligned_cols=122  Identities=19%  Similarity=0.184  Sum_probs=96.9

Q ss_pred             eEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeeecCCCCCeeeeEEEEeecCCCCcEEEEEEEeCC-CCCCcee
Q 045058          270 YFLYVRVVKARELPAMDLTGSIDPFVEVKIGNYKGITKHYEKNQNPQWHQVFAFSRDRMQASVLEVVIKDKD-LVKDDFV  348 (1005)
Q Consensus       270 ~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~~~~~kT~~~~~~~nP~wne~f~f~~~~~~~~~l~v~V~d~~-~~~d~~l  348 (1005)
                      +.|.|+|++|++++..+..+.+||||++.++++.++|++++++.||.|||.|.|.+.+  ...|.|+|||++ +++|++|
T Consensus         6 ~~L~v~v~~A~~~~~~~~~~~~dpyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~~~~--~~~l~~~V~d~d~~~~d~~i   83 (133)
T d2nq3a1           6 SQLQITVISAKLKENKKNWFGPSPYVEVTVDGQSKKTEKCNNTNSPKWKQPLTVIVTP--VSKLHFRVWSHQTLKSDVLL   83 (133)
T ss_dssp             EEEEEEEEEEEECCCC--CCCCCEEEEEEETTEEEECCCCSSCSSCEEEEEEEEEECT--TCEEEEEEEECCSSSCCEEE
T ss_pred             eEEEEEEEEeECCCcCCCCCCcCeEEEEEECCeEEeeEEEEecccEEEcceEEEEEEe--cceeEEEEEEccCCCCCceE
Confidence            5799999999999988888899999999999999999999999999999999999876  358999999999 7889999


Q ss_pred             EEEEEEceecCCCCCCCCCCCCeEEEeecCCCC-ccceEEEEEEEE
Q 045058          349 GIVRFDINEVPLRVPPDSPLAPEWYRLEDKKGE-KIKGELMLAVWI  393 (1005)
Q Consensus       349 G~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~-~~~G~i~l~~~~  393 (1005)
                      |++.++|.++.............|+.|....+. ...|+|.+.+..
T Consensus        84 G~~~i~L~~l~~~~~~~~~~~~~~l~l~~~~~~~~~~G~L~v~l~~  129 (133)
T d2nq3a1          84 GTAALDIYETLKSNNMKLEEVVVTLQLGGDKEPTETIGDLSICLDG  129 (133)
T ss_dssp             EEEEEEHHHHHHHTTTEESSEEEEEEEEESSCTTSEEEEEEEEEES
T ss_pred             EEEEEEHHHhhhhcCCceeeEEEEEecCCCCCCceEEEEEEEEEee
Confidence            999999998864321111223344555554333 367999888754

>d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Piccolo
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.69  E-value=7.9e-18  Score=159.55  Aligned_cols=111  Identities=29%  Similarity=0.455  Sum_probs=92.7

Q ss_pred             CcEEEEEEEEeecCCCCCCCCCCCcEEEEEECC--------------eEeeccccCCCCCCceeeEEEEEeccCccccce
Q 045058            3 NLKLGVQVVGAHNLLPKDGKGSSSAFVELYFDG--------------QRFRTTIKENDLNPVWNESFYFNISDASKLHYL   68 (1005)
Q Consensus         3 ~~~l~V~v~~a~~L~~~d~~g~~dpyv~v~~~~--------------~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~~~   68 (1005)
                      .+.|.|+|++|+||+.++..|.+||||+|++..              +++||++++++.||+|||+|.|.+...+.+...
T Consensus        17 ~~~L~V~V~~A~~L~~~d~~g~~DpyV~v~l~~~~~~~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~   96 (142)
T d1rh8a_          17 LGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEWNQTVIYKSISMEQLMKK   96 (142)
T ss_dssp             TTEEEEEEEEEESCCCCSSSSCSCCEEEEEETTSSCCCEECCCCCHHHHTTTTTTHHHHSCEEEEEEEECSCCHHHHTTC
T ss_pred             CCEEEEEEEEeECCCCcCCCCCCCcCEEEEEecCcccccccccCCCceeeeccCCcCCCCceeEEEEEEeeecccccCCC
Confidence            368999999999999999999999999999821              246899999999999999999985444445567


Q ss_pred             EEEEEEEeCCCCCCCCcccEEEEEeCCcccCCCCceeeeEecccCCC
Q 045058           69 TLEAYIYNNIGDTNSRSFLGKVCLTGNSFVPLSDSVVLHYPLEKRGI  115 (1005)
Q Consensus        69 ~l~v~V~d~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~  115 (1005)
                      .|.|+|||++. .++|++||++.|+|.++...... ..||+|+++..
T Consensus        97 ~L~i~V~d~d~-~~~~~~lG~~~i~L~~l~~~~~~-~~W~~L~~~~~  141 (142)
T d1rh8a_          97 TLEVTVWDYDR-FSSNDFLGEVLIDLSSTSHLDNT-PRWYPLKEQTE  141 (142)
T ss_dssp             EEEEEEEEECS-SSCEEEEEEEEEETTSCGGGTTC-CEEEECBCCCC
T ss_pred             EEEEEEEEecC-CCCCeeeEEEEEEhHHcCCCCCc-eEEEECcCcCC
Confidence            89999999954 56899999999999998665443 57999998753

>d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Regulating synaptic membrane exocytosis protein, rim2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=7.7e-17  Score=148.66  Aligned_cols=107  Identities=21%  Similarity=0.437  Sum_probs=87.3

Q ss_pred             CcEEEEEEEEeecCCCCCCCCCCCcEEEEEE-----CCeEeeccccCCCCCCceeeEEEEEeccCccccceEEEEEEEeC
Q 045058            3 NLKLGVQVVGAHNLLPKDGKGSSSAFVELYF-----DGQRFRTTIKENDLNPVWNESFYFNISDASKLHYLTLEAYIYNN   77 (1005)
Q Consensus         3 ~~~l~V~v~~a~~L~~~d~~g~~dpyv~v~~-----~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~   77 (1005)
                      .++|+|+|++|+||+.++..+.+||||+|++     +..+++|++++++.||+|||+|.|.....+.+....|.|.|||+
T Consensus        13 ~~~L~V~V~~a~~L~~~~~~~~~dpyVkv~l~~~~~~~~~~kT~~~~~t~~P~wne~f~f~~~~~~~l~~~~L~i~v~d~   92 (125)
T d2bwqa1          13 GHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLWDQ   92 (125)
T ss_dssp             TTEEEEEEEEEESCCCCTTSCCBCEEEEEEEESSCSGGGEEECCCCSSBSSCEEEEEEEECSCCGGGGGGCEEEEEEEEC
T ss_pred             CCEEEEEEEEeECCCCcCCCCCCCEEEEEEEeCCCCCccccccCEEcCCCCCEEccEEEEeeeChhhcCCCEEEEEEEEC
Confidence            5799999999999999999999999999998     23478999999999999999999985444446667899999998


Q ss_pred             CCCC-CCCcccEEEEEeCCcccCCCCceeeeEecc
Q 045058           78 IGDT-NSRSFLGKVCLTGNSFVPLSDSVVLHYPLE  111 (1005)
Q Consensus        78 ~~~~-~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~  111 (1005)
                      +... .++++||++.|+|.++...+.  ..||+|+
T Consensus        93 ~~~~~~~~~~iG~~~i~l~~~~~~~~--~~Wy~L~  125 (125)
T d2bwqa1          93 ARVREEESEFLGEILIELETALLDDE--PHWYKLQ  125 (125)
T ss_dssp             -------CEEEEEEEEEGGGCCCSSC--EEEEECC
T ss_pred             CCCCCCCCeeEEEEEEEchhcCCCCC--CEEEeCc
Confidence            6542 346799999999999876554  4699995

>d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.68  E-value=9.1e-17  Score=151.90  Aligned_cols=107  Identities=24%  Similarity=0.328  Sum_probs=91.2

Q ss_pred             CcEEEEEEEEeecCCCCCCCCCCCcEEEEEE---CCeEeeccccCCCCCCceeeEEEEEeccCccccceEEEEEEEeCCC
Q 045058            3 NLKLGVQVVGAHNLLPKDGKGSSSAFVELYF---DGQRFRTTIKENDLNPVWNESFYFNISDASKLHYLTLEAYIYNNIG   79 (1005)
Q Consensus         3 ~~~l~V~v~~a~~L~~~d~~g~~dpyv~v~~---~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~   79 (1005)
                      .+.|+|+|++|+||+.++..|.+||||+|++   ++++++|++++++.||+|||+|.|.+...+ +....|.|+|||++.
T Consensus        33 ~~~L~V~V~~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~kT~~~~~t~~P~wne~f~f~i~~~~-l~~~~L~i~V~d~d~  111 (143)
T d1rsya_          33 NNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSE-LGGKTLVMAVYDFDR  111 (143)
T ss_dssp             TTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETTCCSCEECCCCTTCSSCEEEEEEEECCCHHH-HTTCEEEEEEEECCS
T ss_pred             CCEEEEEEEEccCCCCCCCCCCCCeEEEEEEcCCCCeeEEEEEeccccCcceeeeeEEEEEeec-cCCceEEEEEEEcCC
Confidence            4689999999999999999999999999998   445789999999999999999999985432 445689999999854


Q ss_pred             CCCCCcccEEEEEeCCcccCCCCceeeeEeccc
Q 045058           80 DTNSRSFLGKVCLTGNSFVPLSDSVVLHYPLEK  112 (1005)
Q Consensus        80 ~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~  112 (1005)
                       .+++++||++.|+|.++..... ...||+|+.
T Consensus       112 -~~~~~~iG~~~i~L~~~~~~~~-~~~W~~L~s  142 (143)
T d1rsya_         112 -FSKHDIIGEFKVPMNTVDFGHV-TEEWRDLQS  142 (143)
T ss_dssp             -SSCCEEEEEEEEEGGGCCCSSC-EEEEEECBC
T ss_pred             -CCCCcEEEEEEEEchhccCCCC-CccEEeCCC
Confidence             5688999999999999866543 468999963

>d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Unc-13 homolog A
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.66  E-value=5.5e-16  Score=141.69  Aligned_cols=102  Identities=28%  Similarity=0.431  Sum_probs=87.5

Q ss_pred             eeEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeeecCCCCCeeeeEEEEeecCCCCcEEEEEEEeCCCCCCcee
Q 045058          269 MYFLYVRVVKARELPAMDLTGSIDPFVEVKIGNYKGITKHYEKNQNPQWHQVFAFSRDRMQASVLEVVIKDKDLVKDDFV  348 (1005)
Q Consensus       269 ~~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~~~~~kT~~~~~~~nP~wne~f~f~~~~~~~~~l~v~V~d~~~~~d~~l  348 (1005)
                      ++.|.|+|++|++|.+.+   ..||||++++++++.+|++++ +.||.|||.|.|.+.++. ..|.|+|||++..+|++|
T Consensus         1 ~~~L~V~v~~a~~l~~~~---~~dpYv~l~~~~~k~~T~~~k-~~nP~Wne~f~f~v~~~~-~~L~v~V~d~~~~~d~~l   75 (128)
T d2cjta1           1 MSLLCVGVKKAKFDGAQE---KFNTYVTLKVQNVKSTTIAVR-GSQPSWEQDFMFEINRLD-LGLTVEVWNKGLIWDTMV   75 (128)
T ss_dssp             CEEEEEEEEEEECSSCGG---GCEEEEEEEETTEEEECCCEE-SSSCEEEEEEEEEECCCS-SEEEEEEEECCSSCEEEE
T ss_pred             CeEEEEEEEEEECCCCCC---CcCeEEEEEeCCEEEEEEEec-CCCCeEEEEEEEeecccc-ceEEEEEEeCCCcCCcce
Confidence            368999999999999876   579999999999999999886 569999999999998875 689999999996679999


Q ss_pred             EEEEEEceecCCCCCCCCCCCCeEEEeecC
Q 045058          349 GIVRFDINEVPLRVPPDSPLAPEWYRLEDK  378 (1005)
Q Consensus       349 G~~~i~l~~l~~~~~~~~~~~~~w~~L~~~  378 (1005)
                      |++.|+|.++....   .....+||+|..+
T Consensus        76 G~~~I~L~~l~~~~---~~~~~~W~~L~~~  102 (128)
T d2cjta1          76 GTVWIPLRTIRQSN---EEGPGEWLTLDSQ  102 (128)
T ss_dssp             EEEEEEGGGSCBCS---SCCCCEEEECBC-
T ss_pred             EEEEEEehhhccCC---CCCCCeeEECCcc
Confidence            99999999997542   2346789999764

>d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.65  E-value=3.6e-16  Score=147.76  Aligned_cols=103  Identities=25%  Similarity=0.424  Sum_probs=90.6

Q ss_pred             EEEEEEEEeeeCCCCCCCCCCCcEEEEEE---CCeEEeeecccCCCCCcccccEEEEEeeCC--CCCeEEEEEEeccCCC
Q 045058          435 YVRVNVVEAQDLVPTEKNHFPDVYVKAQI---GNQVLKTKICQARTLSAVWNEDLLFVAAEP--FEDHLVLTVEDRVGPG  509 (1005)
Q Consensus       435 ~L~V~v~~a~~L~~~d~~~~~dpyv~v~l---g~~~~kT~~~~~~t~~P~w~e~f~f~v~~~--~~~~l~i~V~d~d~~~  509 (1005)
                      .|.|+|++|+||+..+..+.+||||++++   +.+.++|++++ ++.||.|||.|.|.+...  ....|.|+|||++..+
T Consensus        35 ~L~V~V~~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~kT~~~~-~t~~P~wne~f~f~i~~~~l~~~~L~i~V~d~d~~~  113 (143)
T d1rsya_          35 QLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHR-KTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRFS  113 (143)
T ss_dssp             EEEEEEEEEESCCCCSTTSCCCEEEEEEEETTCCSCEECCCCT-TCSSCEEEEEEEECCCHHHHTTCEEEEEEEECCSSS
T ss_pred             EEEEEEEEccCCCCCCCCCCCCeEEEEEEcCCCCeeEEEEEec-cccCcceeeeeEEEEEeeccCCceEEEEEEEcCCCC
Confidence            79999999999999999999999999999   55778999986 899999999999987543  4568999999999999


Q ss_pred             CCceeEEEEEcccccccccccccccceeEEccC
Q 045058          510 KDEIIGRVIIPLSAIEKRADERIIHSRWFNLEK  542 (1005)
Q Consensus       510 ~d~~iG~~~i~l~~l~~~~~~~~~~~~w~~L~~  542 (1005)
                      ++++||++.|+|+++....    ...+||+|+.
T Consensus       114 ~~~~iG~~~i~L~~~~~~~----~~~~W~~L~s  142 (143)
T d1rsya_         114 KHDIIGEFKVPMNTVDFGH----VTEEWRDLQS  142 (143)
T ss_dssp             CCEEEEEEEEEGGGCCCSS----CEEEEEECBC
T ss_pred             CCcEEEEEEEEchhccCCC----CCccEEeCCC
Confidence            9999999999999986542    3578999975

>d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.64  E-value=3.5e-16  Score=145.05  Aligned_cols=116  Identities=29%  Similarity=0.373  Sum_probs=93.1

Q ss_pred             cceeeeccccceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC---eeeeeeeecCCCCCeeeeEEEEeec--CCCCcE
Q 045058          258 KTASTYDLVERMYFLYVRVVKARELPAMDLTGSIDPFVEVKIGN---YKGITKHYEKNQNPQWHQVFAFSRD--RMQASV  332 (1005)
Q Consensus       258 ~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~~---~~~kT~~~~~~~nP~wne~f~f~~~--~~~~~~  332 (1005)
                      .++..|+  ...+.|.|+|++|+||+.++.+|.+||||++++.+   ++++|++++++.||.|||+|.|.+.  +.....
T Consensus         8 ~~sl~y~--~~~~~L~V~V~~a~~L~~~~~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~~~~~~   85 (130)
T d1dqva1           8 SFALRYL--YGSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPLAELAQRK   85 (130)
T ss_dssp             EEEEECC--SSSCEEEEEEEEEECCCCCSTTSCCCEEEEEECTTSTTSCEECCCCCSCSSCEEEEEEEEECCGGGGSSCC
T ss_pred             EEEEEEE--CCCCEEEEEEEeeeCCccccCCCCcceEEEEEEccCCCceEeceeEcCCCCeeeeeEEEEEEchHHcCCCe
Confidence            3445554  45689999999999999999999999999999953   5689999999999999999999874  344567


Q ss_pred             EEEEEEeCC-CCCCceeEEEEEEceecCCCCCCCCCCCCeEEEeecC
Q 045058          333 LEVVIKDKD-LVKDDFVGIVRFDINEVPLRVPPDSPLAPEWYRLEDK  378 (1005)
Q Consensus       333 l~v~V~d~~-~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~  378 (1005)
                      |.|+|||++ +++|++||++.|++.......+   .....|++|.+.
T Consensus        86 L~v~V~d~~~~~~d~~iG~~~i~~~~~l~~~~---~~~~~W~~L~~~  129 (130)
T d1dqva1          86 LHFSVYDFDRFSRHDLIGQVVLDNLLELAEQP---PDRPLWRDILEG  129 (130)
T ss_dssp             CEEEEEECCSSSCCCEEEEEECCCTTGGGSSC---SSCCCCEECBCC
T ss_pred             EEEEEEEcCCCCCCceEEEEEECchhhhhcCC---CCCcEEEecccC
Confidence            999999999 7889999999998654433322   234569999863

>d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Piccolo
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.63  E-value=1e-16  Score=151.73  Aligned_cols=114  Identities=32%  Similarity=0.564  Sum_probs=94.9

Q ss_pred             cceeeeccccceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC--------------eeeeeeeecCCCCCeeeeEEEE
Q 045058          258 KTASTYDLVERMYFLYVRVVKARELPAMDLTGSIDPFVEVKIGN--------------YKGITKHYEKNQNPQWHQVFAF  323 (1005)
Q Consensus       258 ~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~~--------------~~~kT~~~~~~~nP~wne~f~f  323 (1005)
                      .++..|+    .+.|.|+|++|+||+.++..|.+||||++++.+              ++.||++++++.||.|||.|.|
T Consensus        10 ~lsl~y~----~~~L~V~V~~A~~L~~~d~~g~~DpyV~v~l~~~~~~~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f   85 (142)
T d1rh8a_          10 QLQINYD----LGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEWNQTVIY   85 (142)
T ss_dssp             EEEEEEE----TTEEEEEEEEEESCCCCSSSSCSCCEEEEEETTSSCCCEECCCCCHHHHTTTTTTHHHHSCEEEEEEEE
T ss_pred             EEEEEEe----CCEEEEEEEEeECCCCcCCCCCCCcCEEEEEecCcccccccccCCCceeeeccCCcCCCCceeEEEEEE
Confidence            4555554    478999999999999999999999999999843              2357888999999999999999


Q ss_pred             ee---cCCCCcEEEEEEEeCC-CCCCceeEEEEEEceecCCCCCCCCCCCCeEEEeecCCC
Q 045058          324 SR---DRMQASVLEVVIKDKD-LVKDDFVGIVRFDINEVPLRVPPDSPLAPEWYRLEDKKG  380 (1005)
Q Consensus       324 ~~---~~~~~~~l~v~V~d~~-~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~  380 (1005)
                      ..   .++....|.|+|||++ +++|++||++.|+|.++...     ....+||+|.+...
T Consensus        86 ~~~~~~~~~~~~L~i~V~d~d~~~~~~~lG~~~i~L~~l~~~-----~~~~~W~~L~~~~~  141 (142)
T d1rh8a_          86 KSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSSTSHL-----DNTPRWYPLKEQTE  141 (142)
T ss_dssp             CSCCHHHHTTCEEEEEEEEECSSSCEEEEEEEEEETTSCGGG-----TTCCEEEECBCCCC
T ss_pred             eeecccccCCCEEEEEEEEecCCCCCeeeEEEEEEhHHcCCC-----CCceEEEECcCcCC
Confidence            73   2345678999999998 78899999999999998765     34679999998653

>d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=2.6e-15  Score=140.56  Aligned_cols=107  Identities=15%  Similarity=0.266  Sum_probs=87.8

Q ss_pred             CcEEEEEEEEeecCCCCCCCC-CCCcEEEEEE---CCeEeeccccCCCCCCceeeEEEEEeccCccccceEEEEEEEeCC
Q 045058            3 NLKLGVQVVGAHNLLPKDGKG-SSSAFVELYF---DGQRFRTTIKENDLNPVWNESFYFNISDASKLHYLTLEAYIYNNI   78 (1005)
Q Consensus         3 ~~~l~V~v~~a~~L~~~d~~g-~~dpyv~v~~---~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~   78 (1005)
                      ...|.|+|++|+||+.++..+ .+||||+|++   +.++++|++++++.||.|||+|.|.......+....|.|+|||++
T Consensus        21 ~~~L~V~V~~a~~L~~~d~~~~~~dpyV~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~l~~~~L~~~V~d~d  100 (138)
T d1ugka_          21 RKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFYGIPYTQIQELALHFTILSFD  100 (138)
T ss_dssp             GTEEEEEEEEEESCCCCBTTTTBCEEEEEEEEETTTCSEEECCCCSSCSSCEEEEEEEEECCCSTTGGGCEEEEEEEEEC
T ss_pred             CCEEEEEEEEecCCCCCCCCCCccceEEEEEEcCCCCEeEeCeeEeCCCCCceeeEEEEeeeCHHHcccceEEEEEEECC
Confidence            368999999999999987665 4799999999   456889999999999999999999854445566778999999986


Q ss_pred             CCCCCCcccEEEEEeCCcccCCCCceeeeEec
Q 045058           79 GDTNSRSFLGKVCLTGNSFVPLSDSVVLHYPL  110 (1005)
Q Consensus        79 ~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L  110 (1005)
                      . .++|++||++.|+|.++.........|..+
T Consensus       101 ~-~~~~~~iG~~~i~L~~~~~~~~~~~~~~~~  131 (138)
T d1ugka_         101 R-FSRDDIIGEVLIPLSGIELSEGKMLMNREI  131 (138)
T ss_dssp             S-SCCCCCCEEEEEECTTCCCTTCCEEEEEEC
T ss_pred             C-CCCCcEEEEEEEEcccccCCCCeEEEEeec
Confidence            4 458999999999999986555444445554

>d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin XIII
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=2.9e-15  Score=140.30  Aligned_cols=104  Identities=14%  Similarity=0.097  Sum_probs=88.8

Q ss_pred             cceEEEEEEEEecCCCCCCCCCCCCCCCcEEEEEEC----CEEEEeeeccCCCCceeccEEEEEEeCC---CceEEEEEE
Q 045058          594 SIGILELGILNAVGLHPMKTRDGRGTSDTYCVAKYG----HKWVRTRTLVDNLSPKYNEQYTWEVFDP---ATVLTVGVF  666 (1005)
Q Consensus       594 ~~g~l~v~i~~a~~L~~~~~~~~~~~~dpyv~~~~g----~~~~~T~~~~~t~nP~wne~f~~~v~~~---~~~l~i~v~  666 (1005)
                      ..+.|.|+|++|++|..      .|.+||||++.+.    ....+|++++++.||+|||.|.|++...   ...|.|+||
T Consensus        24 ~~~~L~V~v~~a~~L~~------~g~~dpyVkv~l~~~~~~~~~kT~v~~~~~~P~wne~f~f~v~~~~l~~~~L~~~V~   97 (138)
T d1wfma_          24 QKAELFVTRLEAVTSNH------DGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPLAEEELPTATLTLTLR   97 (138)
T ss_dssp             TTTEEEEEEEEEECCCC------SSCCCEEEEEEEEETTEEEEEECCCCCCCSSEECSSCEEEECCTTSSTTCEEEEEEE
T ss_pred             CCCEEEEEEEEcCCCCC------CCCcCcEEEEEECCCCCccceeeeEECCCCCceEeeeEEEEeeehhccceEEEEEEe
Confidence            45899999999999963      4678999999993    2357899999999999999999998642   568999999


Q ss_pred             eCCCcCCCCCCCCCcccEEEEEEcccccCCCEEeeeEeeeecC
Q 045058          667 DNSQLGEKSNGNKDLKIGKVRIRISTLETGRIYTHSYPLLVLH  709 (1005)
Q Consensus       667 d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~  709 (1005)
                      |++.++      ++++||++.|+|+++......+.||+|....
T Consensus        98 d~~~~~------~~~~iG~~~i~L~~l~~~~~~~~W~~L~~~~  134 (138)
T d1wfma_          98 TCDRFS------RHSVAGELRLGLDGTSVPLGAAQWGELKTSG  134 (138)
T ss_dssp             ECCSSC------TTSCSEEEEEESSSSSSCTTCCEEEECCCCS
T ss_pred             eecccc------cceeeeEEEEEhHHccCCCCceEeEeCCCCC
Confidence            999776      8899999999999998777678999997543

>d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin XIII
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=4.4e-15  Score=138.99  Aligned_cols=106  Identities=17%  Similarity=0.173  Sum_probs=88.2

Q ss_pred             CcEEEEEEEEeecCCCCCCCCCCCcEEEEEECC----eEeeccccCCCCCCceeeEEEEEeccCccccceEEEEEEEeCC
Q 045058            3 NLKLGVQVVGAHNLLPKDGKGSSSAFVELYFDG----QRFRTTIKENDLNPVWNESFYFNISDASKLHYLTLEAYIYNNI   78 (1005)
Q Consensus         3 ~~~l~V~v~~a~~L~~~d~~g~~dpyv~v~~~~----~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~   78 (1005)
                      .+.|.|+|++|+||.   ..|.+||||+|++..    .+++|++++++.||+|||+|.|.+...+ +....|.|+|||++
T Consensus        25 ~~~L~V~v~~a~~L~---~~g~~dpyVkv~l~~~~~~~~~kT~v~~~~~~P~wne~f~f~v~~~~-l~~~~L~~~V~d~~  100 (138)
T d1wfma_          25 KAELFVTRLEAVTSN---HDGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPLAEEE-LPTATLTLTLRTCD  100 (138)
T ss_dssp             TTEEEEEEEEEECCC---CSSCCCEEEEEEEEETTEEEEEECCCCCCCSSEECSSCEEEECCTTS-STTCEEEEEEEECC
T ss_pred             CCEEEEEEEEcCCCC---CCCCcCcEEEEEECCCCCccceeeeEECCCCCceEeeeEEEEeeehh-ccceEEEEEEeeec
Confidence            478999999999994   356799999999932    3588999999999999999999986543 56678999999995


Q ss_pred             CCCCCCcccEEEEEeCCcccCCCCceeeeEecccCC
Q 045058           79 GDTNSRSFLGKVCLTGNSFVPLSDSVVLHYPLEKRG  114 (1005)
Q Consensus        79 ~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~  114 (1005)
                      . .+++++||++.|+|.++..... .+.|++|++..
T Consensus       101 ~-~~~~~~iG~~~i~L~~l~~~~~-~~~W~~L~~~~  134 (138)
T d1wfma_         101 R-FSRHSVAGELRLGLDGTSVPLG-AAQWGELKTSG  134 (138)
T ss_dssp             S-SCTTSCSEEEEEESSSSSSCTT-CCEEEECCCCS
T ss_pred             c-cccceeeeEEEEEhHHccCCCC-ceEeEeCCCCC
Confidence            4 5689999999999999865433 35799998764

>d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.59  E-value=3.5e-15  Score=139.88  Aligned_cols=107  Identities=25%  Similarity=0.311  Sum_probs=80.0

Q ss_pred             EEEEEEEEeeeCCCCCCCCCCCcEEEEEE--CC---eEEeeecccCCCCCcccccEEEEEeeCC--CCCeEEEEEEeccC
Q 045058          435 YVRVNVVEAQDLVPTEKNHFPDVYVKAQI--GN---QVLKTKICQARTLSAVWNEDLLFVAAEP--FEDHLVLTVEDRVG  507 (1005)
Q Consensus       435 ~L~V~v~~a~~L~~~d~~~~~dpyv~v~l--g~---~~~kT~~~~~~t~~P~w~e~f~f~v~~~--~~~~l~i~V~d~d~  507 (1005)
                      .|.|+|++|+||+..+..+.+||||++++  ++   ...+|++++ ++.||.|||.|.|.+...  ....|.|.|||++.
T Consensus        16 ~L~V~v~~a~~L~~~~~~~~~dpyvkv~l~~~~~~~~~~kT~~~~-~t~~P~wne~f~F~v~~~~~~~~~l~i~v~d~~~   94 (138)
T d1w15a_          16 TLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKK-CTPNAVFNELFVFDIPCESLEEISVEFLVLDSER   94 (138)
T ss_dssp             EEEEEEEEEESCC------CCCEEEEEEEEETTEEEEEEECCCCC-SCSSEEEEEEEEEECCSSSSTTEEEEEEEEECCT
T ss_pred             EEEEEEEEeECCCCCCCCCCcCEEEEEEEeCCcccCccccceeEC-CCCCCeECcEEEEEecHHHhCccEEEEEEEeCCC
Confidence            79999999999999998899999999998  33   345788886 899999999999998544  33469999999999


Q ss_pred             CCCCceeEEEEEccccccccc--------ccccccceeEEccC
Q 045058          508 PGKDEIIGRVIIPLSAIEKRA--------DERIIHSRWFNLEK  542 (1005)
Q Consensus       508 ~~~d~~iG~~~i~l~~l~~~~--------~~~~~~~~w~~L~~  542 (1005)
                      ++++++||++.|++.......        ..+....+||.|..
T Consensus        95 ~~~~~~iG~~~i~l~~~~~~~~hW~~ll~~~~k~i~~Wh~L~~  137 (138)
T d1w15a_          95 GSRNEVIGRLVLGATAEGSGGGHWKEICDFPRRQIAKWHMLCD  137 (138)
T ss_dssp             TSCCEEEEEEEESTTCCSHHHHHHHHHHHSTTCCEEEEEECBC
T ss_pred             CCCCCEEEEEEEcchhCCchHHHHHHHHhCCCCeeeECeEccc
Confidence            999999999999997643221        11234556777754

>d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.59  E-value=4e-15  Score=139.45  Aligned_cols=93  Identities=25%  Similarity=0.364  Sum_probs=74.7

Q ss_pred             CcEEEEEEEEeecCCCCCCCCCCCcEEEEEE--CC---eEeeccccCCCCCCceeeEEEEEeccCccccceEEEEEEEeC
Q 045058            3 NLKLGVQVVGAHNLLPKDGKGSSSAFVELYF--DG---QRFRTTIKENDLNPVWNESFYFNISDASKLHYLTLEAYIYNN   77 (1005)
Q Consensus         3 ~~~l~V~v~~a~~L~~~d~~g~~dpyv~v~~--~~---~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~   77 (1005)
                      .++|.|+|++|+||+.++..+.+||||+|++  ++   .+++|++++++.||.|||+|.|.+...+ +....|.|.|||+
T Consensus        14 ~~~L~V~v~~a~~L~~~~~~~~~dpyvkv~l~~~~~~~~~~kT~~~~~t~~P~wne~f~F~v~~~~-~~~~~l~i~v~d~   92 (138)
T d1w15a_          14 TNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFDIPCES-LEEISVEFLVLDS   92 (138)
T ss_dssp             TTEEEEEEEEEESCC------CCCEEEEEEEEETTEEEEEEECCCCCSCSSEEEEEEEEEECCSSS-STTEEEEEEEEEC
T ss_pred             CCEEEEEEEEeECCCCCCCCCCcCEEEEEEEeCCcccCccccceeECCCCCCeECcEEEEEecHHH-hCccEEEEEEEeC
Confidence            4789999999999999999999999999998  33   2578999999999999999999986543 5667899999998


Q ss_pred             CCCCCCCcccEEEEEeCCcc
Q 045058           78 IGDTNSRSFLGKVCLTGNSF   97 (1005)
Q Consensus        78 ~~~~~~d~~lG~~~i~l~~l   97 (1005)
                      +. .+++++||++.|++.+.
T Consensus        93 ~~-~~~~~~iG~~~i~l~~~  111 (138)
T d1w15a_          93 ER-GSRNEVIGRLVLGATAE  111 (138)
T ss_dssp             CT-TSCCEEEEEEEESTTCC
T ss_pred             CC-CCCCCEEEEEEEcchhC
Confidence            54 55899999999998763

>d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Regulating synaptic membrane exocytosis protein, rim2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=3.7e-15  Score=137.17  Aligned_cols=101  Identities=24%  Similarity=0.431  Sum_probs=81.6

Q ss_pred             EEEEEEEEeeeCCCCCCCCCCCcEEEEEE-----CCeEEeeecccCCCCCcccccEEEEE-eeCC--CCCeEEEEEEecc
Q 045058          435 YVRVNVVEAQDLVPTEKNHFPDVYVKAQI-----GNQVLKTKICQARTLSAVWNEDLLFV-AAEP--FEDHLVLTVEDRV  506 (1005)
Q Consensus       435 ~L~V~v~~a~~L~~~d~~~~~dpyv~v~l-----g~~~~kT~~~~~~t~~P~w~e~f~f~-v~~~--~~~~l~i~V~d~d  506 (1005)
                      .|.|+|++|+||+..+.++.+||||++.+     +...++|++++ ++.||.|||.|.|. +...  ....|.|+|||++
T Consensus        15 ~L~V~V~~a~~L~~~~~~~~~dpyVkv~l~~~~~~~~~~kT~~~~-~t~~P~wne~f~f~~~~~~~l~~~~L~i~v~d~~   93 (125)
T d2bwqa1          15 QLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVK-KTLEPKWNQTFIYSPVHRREFRERMLEITLWDQA   93 (125)
T ss_dssp             EEEEEEEEEESCCCCTTSCCBCEEEEEEEESSCSGGGEEECCCCS-SBSSCEEEEEEEECSCCGGGGGGCEEEEEEEEC-
T ss_pred             EEEEEEEEeECCCCcCCCCCCCEEEEEEEeCCCCCccccccCEEc-CCCCCEEccEEEEeeeChhhcCCCEEEEEEEECC
Confidence            79999999999999999999999999999     23568899996 89999999999996 4322  3457999999998


Q ss_pred             CC--CCCceeEEEEEcccccccccccccccceeEEcc
Q 045058          507 GP--GKDEIIGRVIIPLSAIEKRADERIIHSRWFNLE  541 (1005)
Q Consensus       507 ~~--~~d~~iG~~~i~l~~l~~~~~~~~~~~~w~~L~  541 (1005)
                      ..  +++++||++.|+|+++....     ..+||+|+
T Consensus        94 ~~~~~~~~~iG~~~i~l~~~~~~~-----~~~Wy~L~  125 (125)
T d2bwqa1          94 RVREEESEFLGEILIELETALLDD-----EPHWYKLQ  125 (125)
T ss_dssp             ------CEEEEEEEEEGGGCCCSS-----CEEEEECC
T ss_pred             CCCCCCCeeEEEEEEEchhcCCCC-----CCEEEeCc
Confidence            65  34669999999999987543     35799985

>d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2b-domain of rabphilin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.58  E-value=7.1e-15  Score=137.86  Aligned_cols=106  Identities=25%  Similarity=0.382  Sum_probs=87.2

Q ss_pred             CcEEEEEEEEeecCCCCCCCCCCCcEEEEEEC-----CeEeeccccCCCCCCceeeEEEEEeccCccccceEEEEEEEeC
Q 045058            3 NLKLGVQVVGAHNLLPKDGKGSSSAFVELYFD-----GQRFRTTIKENDLNPVWNESFYFNISDASKLHYLTLEAYIYNN   77 (1005)
Q Consensus         3 ~~~l~V~v~~a~~L~~~d~~g~~dpyv~v~~~-----~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~   77 (1005)
                      .+.|+|+|++|+||+.++..|.+||||+|++.     ..++||++++++.||+|||+|.|.+...+ +....|.|.|||+
T Consensus        14 ~~~L~V~v~~a~nL~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~-l~~~~l~v~v~~~   92 (137)
T d2cm5a1          14 QGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIKHSD-LAKKSLDISVWDY   92 (137)
T ss_dssp             TTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETC---CCEEECCCCCSCSSCEEEEEEEEECCGGG-GGGCEEEEEEEEC
T ss_pred             CCEEEEEEEEEECCCCCCCCCCcCeEEEEEEEcCCccceeecCEeEcCCCCCccceEEEEEeEHHH-ccccEEEEEeeeC
Confidence            47899999999999999989999999999982     24689999999999999999999986543 5667899999998


Q ss_pred             CCCCCCCcccEEEEEeCCcccCCCCceeeeEecccC
Q 045058           78 IGDTNSRSFLGKVCLTGNSFVPLSDSVVLHYPLEKR  113 (1005)
Q Consensus        78 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~  113 (1005)
                      + ..+++++||++.+++.++..   ....|++|.+.
T Consensus        93 ~-~~~~~~~iG~~~i~l~~~~~---~~~~W~~l~~~  124 (137)
T d2cm5a1          93 D-IGKSNDYIGGCQLGISAKGE---RLKHWYECLKN  124 (137)
T ss_dssp             C-SSSCCEEEEEEEEETTCCHH---HHHHHHHHHHC
T ss_pred             C-CCCCCCEEEEEEeCccccCc---chhhhhhHhhC
Confidence            5 45689999999999876432   22357776544

>d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.58  E-value=5.1e-15  Score=141.96  Aligned_cols=109  Identities=28%  Similarity=0.349  Sum_probs=89.5

Q ss_pred             CcEEEEEEEEeecCCCCCCCCCCCcEEEEEEC--C---eEeeccccCCCCCCceeeEEEEEeccCccccceEEEEEEEeC
Q 045058            3 NLKLGVQVVGAHNLLPKDGKGSSSAFVELYFD--G---QRFRTTIKENDLNPVWNESFYFNISDASKLHYLTLEAYIYNN   77 (1005)
Q Consensus         3 ~~~l~V~v~~a~~L~~~d~~g~~dpyv~v~~~--~---~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~   77 (1005)
                      .++|.|+|++|+||+.++..+.+||||+|++.  +   .+++|++++++.||+|||+|.|.+...+ +....|.|.|||+
T Consensus        24 ~~~L~V~V~~a~~L~~~~~~~~~dpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~F~v~~~~-l~~~~l~i~v~d~  102 (157)
T d1uowa_          24 AGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQ-IQKVQVVVTVLDY  102 (157)
T ss_dssp             TTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEEEECCGGG-GGGCEEEEEEEEC
T ss_pred             CCEEEEEEEEEEEcccccCCCCCCeeEEEEEecCCccccceecccccCCCCcccCCeEEEEecHHH-cCccEEEEEEccc
Confidence            47999999999999999999999999999983  2   2468999999999999999999986643 5567899999999


Q ss_pred             CCCCCCCcccEEEEEeCCcc-----------cCCCCceeeeEecccC
Q 045058           78 IGDTNSRSFLGKVCLTGNSF-----------VPLSDSVVLHYPLEKR  113 (1005)
Q Consensus        78 ~~~~~~d~~lG~~~i~l~~l-----------~~~~~~~~~w~~L~~~  113 (1005)
                      +. .+++++||++.|++.+.           .........|++|+.+
T Consensus       103 ~~-~~~~~~iG~~~i~l~~~~~~~~hW~~~~~~~~~~v~~Wh~L~~~  148 (157)
T d1uowa_         103 DK-IGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQWHTLQVE  148 (157)
T ss_dssp             CS-SSCCCEEEEEEEETTCCHHHHHHHHHHHHSTTCCEEEEEECBCH
T ss_pred             CC-CCCCceeEEEEEecccCChhHHHHHHHHhCCCCceeEeEeCCCC
Confidence            54 56899999999999663           1223334579999764

>d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2b-domain of rabphilin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.56  E-value=1.4e-14  Score=135.81  Aligned_cols=90  Identities=22%  Similarity=0.300  Sum_probs=79.2

Q ss_pred             EEEEEEEEeeeCCCCCCCCCCCcEEEEEE-----CCeEEeeecccCCCCCcccccEEEEEeeCC--CCCeEEEEEEeccC
Q 045058          435 YVRVNVVEAQDLVPTEKNHFPDVYVKAQI-----GNQVLKTKICQARTLSAVWNEDLLFVAAEP--FEDHLVLTVEDRVG  507 (1005)
Q Consensus       435 ~L~V~v~~a~~L~~~d~~~~~dpyv~v~l-----g~~~~kT~~~~~~t~~P~w~e~f~f~v~~~--~~~~l~i~V~d~d~  507 (1005)
                      .|.|.|++|+||+..+..+.+||||++++     ....++|++++ ++.||.|||.|.|.+...  ....|.|.|||++.
T Consensus        16 ~L~V~v~~a~nL~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~-~t~~P~wne~f~f~v~~~~l~~~~l~v~v~~~~~   94 (137)
T d2cm5a1          16 GLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKK-KTLNPEFNEEFFYDIKHSDLAKKSLDISVWDYDI   94 (137)
T ss_dssp             EEEEEEEEEESCCCCSTTSCCCEEEEEEEETC---CCEEECCCCC-SCSSCEEEEEEEEECCGGGGGGCEEEEEEEECCS
T ss_pred             EEEEEEEEEECCCCCCCCCCcCeEEEEEEEcCCccceeecCEeEc-CCCCCccceEEEEEeEHHHccccEEEEEeeeCCC
Confidence            79999999999999998999999999998     23567899886 899999999999998644  45689999999999


Q ss_pred             CCCCceeEEEEEcccccc
Q 045058          508 PGKDEIIGRVIIPLSAIE  525 (1005)
Q Consensus       508 ~~~d~~iG~~~i~l~~l~  525 (1005)
                      .+++++||++.|++.++.
T Consensus        95 ~~~~~~iG~~~i~l~~~~  112 (137)
T d2cm5a1          95 GKSNDYIGGCQLGISAKG  112 (137)
T ss_dssp             SSCCEEEEEEEEETTCCH
T ss_pred             CCCCCEEEEEEeCccccC
Confidence            999999999999998653

>d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=3.7e-14  Score=132.57  Aligned_cols=92  Identities=32%  Similarity=0.448  Sum_probs=79.2

Q ss_pred             EEEEEEEEeeeCCCCCCCCC-CCcEEEEEE---CCeEEeeecccCCCCCcccccEEEEEeeCC---CCCeEEEEEEeccC
Q 045058          435 YVRVNVVEAQDLVPTEKNHF-PDVYVKAQI---GNQVLKTKICQARTLSAVWNEDLLFVAAEP---FEDHLVLTVEDRVG  507 (1005)
Q Consensus       435 ~L~V~v~~a~~L~~~d~~~~-~dpyv~v~l---g~~~~kT~~~~~~t~~P~w~e~f~f~v~~~---~~~~l~i~V~d~d~  507 (1005)
                      .|.|+|++|+||+..+..+. +||||++.+   +.+.++|++++ ++.||.|||.|.|.....   ....|.|+|||++.
T Consensus        23 ~L~V~V~~a~~L~~~d~~~~~~dpyV~v~l~~~~~~~~kT~v~~-~t~nP~wne~f~f~~~~~~~l~~~~L~~~V~d~d~  101 (138)
T d1ugka_          23 AFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLR-KTLDPAFDETFTFYGIPYTQIQELALHFTILSFDR  101 (138)
T ss_dssp             EEEEEEEEEESCCCCBTTTTBCEEEEEEEEETTTCSEEECCCCS-SCSSCEEEEEEEEECCCSTTGGGCEEEEEEEEECS
T ss_pred             EEEEEEEEecCCCCCCCCCCccceEEEEEEcCCCCEeEeCeeEe-CCCCCceeeEEEEeeeCHHHcccceEEEEEEECCC
Confidence            79999999999998877654 799999999   55788999986 999999999999964322   34579999999999


Q ss_pred             CCCCceeEEEEEcccccccc
Q 045058          508 PGKDEIIGRVIIPLSAIEKR  527 (1005)
Q Consensus       508 ~~~d~~iG~~~i~l~~l~~~  527 (1005)
                      ++++++||++.|+|+++...
T Consensus       102 ~~~~~~iG~~~i~L~~~~~~  121 (138)
T d1ugka_         102 FSRDDIIGEVLIPLSGIELS  121 (138)
T ss_dssp             SCCCCCCEEEEEECTTCCCT
T ss_pred             CCCCcEEEEEEEEcccccCC
Confidence            99999999999999998543

>d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C delta
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.53  E-value=1.5e-14  Score=131.52  Aligned_cols=108  Identities=10%  Similarity=0.160  Sum_probs=84.7

Q ss_pred             EEEEEEEEeecCCCCCCCCCCCcEEEEEECCe-----EeeccccCCCCCCceeeEEEEEeccCccccceEEEEEEEeCCC
Q 045058            5 KLGVQVVGAHNLLPKDGKGSSSAFVELYFDGQ-----RFRTTIKENDLNPVWNESFYFNISDASKLHYLTLEAYIYNNIG   79 (1005)
Q Consensus         5 ~l~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~-----~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~   79 (1005)
                      ++.|.++.+..+  ++..|.+||||+|++++.     .++|+++++|+||+|||+|.|.+.+.     ..|.|.|||+  
T Consensus         6 ~~~~~~~~~~~~--~~~~~~~dPY~~v~l~~~~~~~~~~~t~~~kkT~nP~WnE~F~~~v~~~-----~~l~i~V~d~--   76 (123)
T d1bdya_           6 RISFNSYELGSL--QAEDDASQPFCAVKMKEALTTDRGKTLVQKKPTMYPEWKSTFDAHIYEG-----RVIQIVLMRA--   76 (123)
T ss_dssp             EEEEEEEECCTT--CCCCCSCCCEEEEEEEEECCGGGTTBEEECSCCBCCCTTCEEEEECCTT-----CEEEEEEEEE--
T ss_pred             EEEEEEeecccC--CCCCCCCCCEEEEEEcCccccccceEEEEeCCCCCcccceEEEEEEccc-----cEEEEEEEEc--
Confidence            344555555444  445788999999999653     46788999999999999999999653     3799999996  


Q ss_pred             CCCCCcccEEEEEeCCccc----CCCCceeeeEecccCCCcceeeeEEEEEEEEec
Q 045058           80 DTNSRSFLGKVCLTGNSFV----PLSDSVVLHYPLEKRGIFSHVRGELGLKVYITD  131 (1005)
Q Consensus        80 ~~~~d~~lG~~~i~l~~l~----~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~~~  131 (1005)
                         .|+++|.+.+++.++.    ..+...+.|++|++       +|+|++++.|..
T Consensus        77 ---dd~~~g~~~i~l~~l~~~~~~~~~~~~~W~~L~~-------~Gkl~l~v~~f~  122 (123)
T d1bdya_          77 ---AEDPMSEVTVGVSVLAERCKKNNGKAEFWLDLQP-------QAKVLMCVQYFL  122 (123)
T ss_dssp             ---TTEEEEEEEEEHHHHHHHHHTTTTEEEEEEECBS-------SCEEEEEEEEEE
T ss_pred             ---cccccCccEEehhheeeccccCCCcccEEEeCCC-------CEEEEEEEEEec
Confidence               3789999999998873    34556678999964       589999998875

>d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.52  E-value=3.4e-14  Score=136.09  Aligned_cols=109  Identities=27%  Similarity=0.379  Sum_probs=88.8

Q ss_pred             EEEEEEEEeeeCCCCCCCCCCCcEEEEEE--CC---eEEeeecccCCCCCcccccEEEEEeeCC--CCCeEEEEEEeccC
Q 045058          435 YVRVNVVEAQDLVPTEKNHFPDVYVKAQI--GN---QVLKTKICQARTLSAVWNEDLLFVAAEP--FEDHLVLTVEDRVG  507 (1005)
Q Consensus       435 ~L~V~v~~a~~L~~~d~~~~~dpyv~v~l--g~---~~~kT~~~~~~t~~P~w~e~f~f~v~~~--~~~~l~i~V~d~d~  507 (1005)
                      .|.|.|++|+||+..+..+.+||||++++  ++   ...+|++++ ++.||.|||.|.|.+...  ....|.|+|||++.
T Consensus        26 ~L~V~V~~a~~L~~~~~~~~~dpyV~v~l~~~~~~~~~~kT~v~~-~t~nP~wne~f~F~v~~~~l~~~~l~i~v~d~~~  104 (157)
T d1uowa_          26 KLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKK-NTLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDK  104 (157)
T ss_dssp             EEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCCCC-SCSSCEEEEEEEEECCGGGGGGCEEEEEEEECCS
T ss_pred             EEEEEEEEEEEcccccCCCCCCeeEEEEEecCCccccceeccccc-CCCCcccCCeEEEEecHHHcCccEEEEEEcccCC
Confidence            79999999999999999999999999999  22   345788885 899999999999998655  34589999999999


Q ss_pred             CCCCceeEEEEEcccccccc--------cccccccceeEEccCCC
Q 045058          508 PGKDEIIGRVIIPLSAIEKR--------ADERIIHSRWFNLEKPV  544 (1005)
Q Consensus       508 ~~~d~~iG~~~i~l~~l~~~--------~~~~~~~~~w~~L~~~~  544 (1005)
                      ++++++||++.|++......        ...+....+||+|....
T Consensus       105 ~~~~~~iG~~~i~l~~~~~~~~hW~~~~~~~~~~v~~Wh~L~~~~  149 (157)
T d1uowa_         105 IGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQWHTLQVEE  149 (157)
T ss_dssp             SSCCCEEEEEEEETTCCHHHHHHHHHHHHSTTCCEEEEEECBCHH
T ss_pred             CCCCceeEEEEEecccCChhHHHHHHHHhCCCCceeEeEeCCCCc
Confidence            99999999999999764221        01234567899998653

>d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C delta
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.49  E-value=5.1e-14  Score=127.98  Aligned_cols=104  Identities=10%  Similarity=0.237  Sum_probs=83.8

Q ss_pred             EEEEEEEecCCCCCCCCCCCCCCCcEEEEEECCE-----EEEeeeccCCCCceeccEEEEEEeCCCceEEEEEEeCCCcC
Q 045058          598 LELGILNAVGLHPMKTRDGRGTSDTYCVAKYGHK-----WVRTRTLVDNLSPKYNEQYTWEVFDPATVLTVGVFDNSQLG  672 (1005)
Q Consensus       598 l~v~i~~a~~L~~~~~~~~~~~~dpyv~~~~g~~-----~~~T~~~~~t~nP~wne~f~~~v~~~~~~l~i~v~d~~~~~  672 (1005)
                      +.+.++.+..++     ...+.+||||+|.+++.     ..+|+++++|+||+|||+|+|.|.+ ...|.|.|||+    
T Consensus         7 ~~~~~~~~~~~~-----~~~~~~dPY~~v~l~~~~~~~~~~~t~~~kkT~nP~WnE~F~~~v~~-~~~l~i~V~d~----   76 (123)
T d1bdya_           7 ISFNSYELGSLQ-----AEDDASQPFCAVKMKEALTTDRGKTLVQKKPTMYPEWKSTFDAHIYE-GRVIQIVLMRA----   76 (123)
T ss_dssp             EEEEEEECCTTC-----CCCCSCCCEEEEEEEEECCGGGTTBEEECSCCBCCCTTCEEEEECCT-TCEEEEEEEEE----
T ss_pred             EEEEEeecccCC-----CCCCCCCCEEEEEEcCccccccceEEEEeCCCCCcccceEEEEEEcc-ccEEEEEEEEc----
Confidence            444455555554     34788999999999543     3578899999999999999999976 46899999998    


Q ss_pred             CCCCCCCCcccEEEEEEccccc-----CCCEEeeeEeeeecCCCCCceeeEEEEEEEE
Q 045058          673 EKSNGNKDLKIGKVRIRISTLE-----TGRIYTHSYPLLVLHPTGVKKMGELHLAIRF  725 (1005)
Q Consensus       673 ~~~~~~~d~~lG~~~i~l~~l~-----~~~~~~~~~~L~~~~~~~~~~~G~i~l~~~~  725 (1005)
                            .++++|.+.|++..|.     .+...+.|++|.        +.|+|++.++|
T Consensus        77 ------dd~~~g~~~i~l~~l~~~~~~~~~~~~~W~~L~--------~~Gkl~l~v~~  120 (123)
T d1bdya_          77 ------AEDPMSEVTVGVSVLAERCKKNNGKAEFWLDLQ--------PQAKVLMCVQY  120 (123)
T ss_dssp             ------TTEEEEEEEEEHHHHHHHHHTTTTEEEEEEECB--------SSCEEEEEEEE
T ss_pred             ------cccccCccEEehhheeeccccCCCcccEEEeCC--------CCEEEEEEEEE
Confidence                  4789999999999874     356788999994        35999999997

>d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.48  E-value=2.1e-14  Score=135.80  Aligned_cols=90  Identities=30%  Similarity=0.389  Sum_probs=78.6

Q ss_pred             EEEEEEEEeeeCCCCCCCCCCCcEEEEEECC-----eEEeeecccCCCCCcccccEEEEEeeCC--CCCeEEEEEEeccC
Q 045058          435 YVRVNVVEAQDLVPTEKNHFPDVYVKAQIGN-----QVLKTKICQARTLSAVWNEDLLFVAAEP--FEDHLVLTVEDRVG  507 (1005)
Q Consensus       435 ~L~V~v~~a~~L~~~d~~~~~dpyv~v~lg~-----~~~kT~~~~~~t~~P~w~e~f~f~v~~~--~~~~l~i~V~d~d~  507 (1005)
                      .|.|.|++|+||+..+..+.+||||++++..     ...+|++++ ++.||.|||.|.|.+...  ....|.|.|+|++.
T Consensus        21 ~L~V~V~~a~nL~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~-~t~~P~wne~f~F~v~~~~~~~~~l~v~v~d~~~   99 (145)
T d1dqva2          21 LLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKK-NTLNPTYNEALVFDVAPESVENVGLSIAVVDYDC   99 (145)
T ss_dssp             EEEEEEEEEESCCCCSSSSCCCEEEEECCCTTCCTTSCEECCCCC-SCSSCEEEECCCCCCCSGGGGSCCCCCEEEECCS
T ss_pred             EEEEEEEEEeCCCCcCCCCCcCceEEEEEccCCccceeecCEEEe-CCCCceecceEEEEEehhhcCCCEEEEEEEecCC
Confidence            7999999999999999899999999999943     256788886 899999999999987543  44579999999999


Q ss_pred             CCCCceeEEEEEcccccc
Q 045058          508 PGKDEIIGRVIIPLSAIE  525 (1005)
Q Consensus       508 ~~~d~~iG~~~i~l~~l~  525 (1005)
                      .+++++||++.|++..+.
T Consensus       100 ~~~~~~iG~~~i~l~~~~  117 (145)
T d1dqva2         100 IGHNEVIGVCRVGPEAAD  117 (145)
T ss_dssp             SSCCEEEEECCCSSCTTC
T ss_pred             CCCCcEEEEEEECchHcC
Confidence            999999999999998764

>d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.46  E-value=1.3e-14  Score=137.15  Aligned_cols=105  Identities=21%  Similarity=0.264  Sum_probs=85.3

Q ss_pred             CcEEEEEEEEeecCCCCCCCCCCCcEEEEEECCe-----EeeccccCCCCCCceeeEEEEEeccCccccceEEEEEEEeC
Q 045058            3 NLKLGVQVVGAHNLLPKDGKGSSSAFVELYFDGQ-----RFRTTIKENDLNPVWNESFYFNISDASKLHYLTLEAYIYNN   77 (1005)
Q Consensus         3 ~~~l~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~-----~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~   77 (1005)
                      .++|.|+|++|+||+.++..|.+||||+|++...     +++|++++++.||+|||+|.|.+... .+....|.|.|||+
T Consensus        19 ~~~L~V~V~~a~nL~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~~P~wne~f~F~v~~~-~~~~~~l~v~v~d~   97 (145)
T d1dqva2          19 AGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVAPE-SVENVGLSIAVVDY   97 (145)
T ss_dssp             TTEEEEEEEEEESCCCCSSSSCCCEEEEECCCTTCCTTSCEECCCCCSCSSCEEEECCCCCCCSG-GGGSCCCCCEEEEC
T ss_pred             CCEEEEEEEEEeCCCCcCCCCCcCceEEEEEccCCccceeecCEEEeCCCCceecceEEEEEehh-hcCCCEEEEEEEec
Confidence            4789999999999999998999999999998432     57899999999999999999988653 35567899999998


Q ss_pred             CCCCCCCcccEEEEEeCCcccCCCCceeeeEecc
Q 045058           78 IGDTNSRSFLGKVCLTGNSFVPLSDSVVLHYPLE  111 (1005)
Q Consensus        78 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~  111 (1005)
                      + ..+++++||++.|++..+...+  ...|++|.
T Consensus        98 ~-~~~~~~~iG~~~i~l~~~~~~~--~~~W~~l~  128 (145)
T d1dqva2          98 D-CIGHNEVIGVCRVGPEAADPHG--REHWAEML  128 (145)
T ss_dssp             C-SSSCCEEEEECCCSSCTTCHHH--HHHHHTSS
T ss_pred             C-CCCCCcEEEEEEECchHcCchh--hHHHHHHH
Confidence            5 4568999999999997753222  12466654

>d2zkmx2 b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Phospholipase C-beta-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=2e-12  Score=116.99  Aligned_cols=110  Identities=25%  Similarity=0.382  Sum_probs=82.9

Q ss_pred             EEEEEEEEeecCCCCCCCCCCCcEEEEEECC------eEeecc--ccCCCCCCceeeE-EEEE-eccCccccceEEEEEE
Q 045058            5 KLGVQVVGAHNLLPKDGKGSSSAFVELYFDG------QRFRTT--IKENDLNPVWNES-FYFN-ISDASKLHYLTLEAYI   74 (1005)
Q Consensus         5 ~l~V~v~~a~~L~~~d~~g~~dpyv~v~~~~------~~~~T~--v~~~t~nP~Wne~-f~f~-v~~~~~~~~~~l~v~V   74 (1005)
                      .|.|+|++|++|+.+    .+||||+|++-|      .+.+|+  +..+++||+|||+ |.|. +..++   ...|.|.|
T Consensus         2 tl~V~Visaq~L~~~----~~dPyV~V~l~g~~~D~~~~~~t~~~~~~n~~nP~wne~~~~~~~~~~~~---l~~L~f~V   74 (122)
T d2zkmx2           2 TLSITVISGQFLSER----SVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKILMPE---LASLRVAV   74 (122)
T ss_dssp             EEEEEEEEEESCCSS----CCCEEEEEEEECCTTSCCCCEECCCCSSSCCSSCBCCCCCEEEEEESSGG---GCEEEEEE
T ss_pred             EEEEEEEEeeCCCCC----CCCcEEEEEEECcCCCCCccEEEEEEEeCCeecceEcccEeEEEecCCCc---ccEEEEEE
Confidence            589999999999764    489999999832      334444  4578999999976 4443 44433   25899999


Q ss_pred             EeCCCCCCCCcccEEEEEeCCcccCCCCceeeeEecccCCCcceeeeEEEEEEEEe
Q 045058           75 YNNIGDTNSRSFLGKVCLTGNSFVPLSDSVVLHYPLEKRGIFSHVRGELGLKVYIT  130 (1005)
Q Consensus        75 ~d~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~~  130 (1005)
                      ||+     +|+|||++.+++..+..+    ..+++|....+..-..+.|.+.+.+.
T Consensus        75 ~D~-----d~~~lG~~~ipl~~l~~G----yR~vpL~~~~g~~l~~~~L~v~i~~~  121 (122)
T d2zkmx2          75 MEE-----GNKFLGHRIIPINALNSG----YHHLCLHSESNMPLTMPALFIFLEMK  121 (122)
T ss_dssp             EET-----TTEEEEEEEEEGGGBCCE----EEEEEEECTTCCEEEEEEEEEEEEEE
T ss_pred             ECC-----CCCEEEEEEEEcccCcCC----ceEEEccCCCcCCCCCceEEEEEEEE
Confidence            997     378999999999988553    46799998877655667777777654

>d2zkmx2 b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Phospholipase C-beta-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=4e-12  Score=114.90  Aligned_cols=108  Identities=20%  Similarity=0.377  Sum_probs=79.6

Q ss_pred             EEEEEEEEecCCCCCCCCCCCCCCCcEEEEEE-C-----CEEEEeeec--cCCCCceeccE-EEE-EEeCC-CceEEEEE
Q 045058          597 ILELGILNAVGLHPMKTRDGRGTSDTYCVAKY-G-----HKWVRTRTL--VDNLSPKYNEQ-YTW-EVFDP-ATVLTVGV  665 (1005)
Q Consensus       597 ~l~v~i~~a~~L~~~~~~~~~~~~dpyv~~~~-g-----~~~~~T~~~--~~t~nP~wne~-f~~-~v~~~-~~~l~i~v  665 (1005)
                      .|+|+|++|++|+.       .+.||||++++ |     .+..+|+++  .+++||.|||. |.| .+..+ ...|.|.|
T Consensus         2 tl~V~Visaq~L~~-------~~~dPyV~V~l~g~~~D~~~~~~t~~~~~~n~~nP~wne~~~~~~~~~~~~l~~L~f~V   74 (122)
T d2zkmx2           2 TLSITVISGQFLSE-------RSVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKILMPELASLRVAV   74 (122)
T ss_dssp             EEEEEEEEEESCCS-------SCCCEEEEEEEECCTTSCCCCEECCCCSSSCCSSCBCCCCCEEEEEESSGGGCEEEEEE
T ss_pred             EEEEEEEEeeCCCC-------CCCCcEEEEEEECcCCCCCccEEEEEEEeCCeecceEcccEeEEEecCCCcccEEEEEE
Confidence            58999999999983       35799999998 3     234556554  46799999986 433 34444 45899999


Q ss_pred             EeCCCcCCCCCCCCCcccEEEEEEcccccCCCEEeeeEeeeecCCCCCceeeEEEEEEEE
Q 045058          666 FDNSQLGEKSNGNKDLKIGKVRIRISTLETGRIYTHSYPLLVLHPTGVKKMGELHLAIRF  725 (1005)
Q Consensus       666 ~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~G~i~l~~~~  725 (1005)
                      ||+          .|++||.+.|||+.|..|-   ++.||....+... ..+.|.+.+++
T Consensus        75 ~D~----------d~~~lG~~~ipl~~l~~Gy---R~vpL~~~~g~~l-~~~~L~v~i~~  120 (122)
T d2zkmx2          75 MEE----------GNKFLGHRIIPINALNSGY---HHLCLHSESNMPL-TMPALFIFLEM  120 (122)
T ss_dssp             EET----------TTEEEEEEEEEGGGBCCEE---EEEEEECTTCCEE-EEEEEEEEEEE
T ss_pred             ECC----------CCCEEEEEEEEcccCcCCc---eEEEccCCCcCCC-CCceEEEEEEE
Confidence            998          4799999999999998884   7889975443322 34666666654