Citrus Sinensis ID: 045061

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------36
HEKNYFYTVDVLFGTPSKSEFLLFDTGSYLIWTQCLPCVNCFNQSAPIFNPNASSTYKRIPCDDLICRRPPFRCENGQCVHRINYAGGASASGLVSTETFTFHLKNKLVCVPGVIFGCSNDNRDFSFDGNIAGILGFSVSPFSLLGQLKSTAQGLFSYCLVYAYREMEATSILRFGKDANIQRKDMKTIRMFVDRSSHYYLSLQDISVADHRIGFAPGTFALRRNGTGGCMIDTGAIATFIQRGPYEVVMRHFDEHFTSFGRQRMHNASEDWEYCYRYDSRFRAYASMTFHFDRADFKVEPTYMYFIFQNEGYFCVAISFSDRNSVVGAWQQQDTRFVYDLNTGTIQFVPENCANDHFL
ccccEEEEEEEEEcccccEEEEEEEccccccEEccccccccccccccccccccccccccccccccccccccccccccccEEEEEEccccEEEEEEEEEEEEEEcccccEEcccEEEEcEEccccccccccccEEEccccccccHHHHHHHccccccEEEcccccccccccEEEEEcccccccccccEEEEEcccccccEEEEEEEEEEccEEEcccccccEEcccccccEEEcccccccccccHHHHHHHHHHHHHHHHcccccccccccccccEEEcccccccccEEEEEEccccEEEcccccEEEEEcccEEEEEEEccccccEEEEEEEEEEEEEEEccccEEEEEEccccccccc
cccccEEEEEEEEccccccEEEEEEcccccEEEEccccHHHHccccccccccccccccEcccccHHHcccccccccccEEEEEEEcccccccEEEEEEEEEEccccccEEEccEEEEccccccccEHccccccEEEcccccccHHHHHccccccEEEEEEEccccccccccEEEEcccccccccccEccccccccccEEEEEEEEEEEccEEEcccHHHEEcccccccEEEEEcccEEEEccHHHHHHHHHHHHHHHHHccccccccccccccccEccccccccccEEEEEEccccccccccHcEEEEccccEEEEEEEccccEEEEEEEEEccEEEEEEccccEEEEccccccccccc
HEKNYFYTVDVlfgtpsksefllfdtgsyliwtqclpcvncfnqsapifnpnasstykripcddlicrrppfrcengqcvhrinyaggasasglvstETFTFHLKnklvcvpgvifgcsndnrdfsfdgniagilgfsvspfsllgqLKSTAQGLFSYCLVYAYREMEATSILRfgkdaniqrkdMKTIRMFVDrsshyylslqdisvadhrigfapgtfalrrngtggcmidTGAIATFIQRGPYEVVMRHFDEHFTSFGRQRMHNASEDWEYCYRYDSRFRAYASMTfhfdradfkveptyMYFIFQNEGYFCVAIsfsdrnsvvgawqqqdtrfvydlntgtiqfvpencandhfl
HEKNYFYTVDVLFGTPSKSEFLLFDTGSYLIWTQCLPCVNCFNQSAPIFnpnasstykriPCDDLICRRPPFRCENGQCVHRINYAGGASASGLVSTETFTFHLKNKLVCVPGVIFGCSNDNRDFSFDGNIAGILGFSVSPFSLLGQLKSTAQGLFSYCLVYAYREMEATSIlrfgkdaniqrkDMKTIRMFVDRSSHYYLSLQDISVADHRIGFAPGTFALRRNGTGGCMIDTGAIATFIQRGPYEVVMRHFDEHFTSFGRQRMHNASEDWEYCYRYDSRFRAYASMTFHFDRADFKVEPTYMYFIFQNEGYFCVAISFSDRNSVVGAWQQQDTRFVYDLNTGTIqfvpencandhFL
HEKNYFYTVDVLFGTPSKSEFLLFDTGSYLIWTQCLPCVNCFNQSAPIFNPNASSTYKRIPCDDLICRRPPFRCENGQCVHRINYAGGASASGLVSTETFTFHLKNKLVCVPGVIFGCSNDNRDFSFDGNIAGILGFSVSPFSLLGQLKSTAQGLFSYCLVYAYREMEATSILRFGKDANIQRKDMKTIRMFVDRSSHYYLSLQDISVADHRIGFAPGTFALRRNGTGGCMIDTGAIATFIQRGPYEVVMRHFDEHFTSFGRQRMHNASEDWEYCYRYDSRFRAYASMTFHFDRADFKVEPTYMYFIFQNEGYFCVAISFSDRNSVVGAWQQQDTRFVYDLNTGTIQFVPENCANDHFL
***NYFYTVDVLFGTPSKSEFLLFDTGSYLIWTQCLPCVNCFNQSAPIFNPNASSTYKRIPCDDLICRRPPFRCENGQCVHRINYAGGASASGLVSTETFTFHLKNKLVCVPGVIFGCSNDNRDFSFDGNIAGILGFSVSPFSLLGQLKSTAQGLFSYCLVYAYREMEATSILRFGKDANIQRKDMKTIRMFVDRSSHYYLSLQDISVADHRIGFAPGTFALRRNGTGGCMIDTGAIATFIQRGPYEVVMRHFDEHFTSFGRQRMHNASEDWEYCYRYDSRFRAYASMTFHFDRADFKVEPTYMYFIFQNEGYFCVAISFSDRNSVVGAWQQQDTRFVYDLNTGTIQFVPENC******
*EKNYFYTVDVLFGTPSKSEFLLFDTGSYLIWTQCLPCVNCFNQSAPIFNPNASSTYKRIPCDD*IC*******ENGQCVHRINYAGGASASGLVSTETFTFHLKNKLVCVPGVIFGCSNDNRDFSFDGNIAGILGFSVSPFSLLGQLKSTAQGLFSYCLVY************FGKDANIQRKDMKTIRMFVDRSSHYYLSLQDISVADHRIGFAPGTFALRRNGTGGCMIDTGAIATFIQRGPYEVVMRHFDEH************SEDWEYCYRYDSRFRAYASMTFHFDRADFKVEPTYMYFIFQNEGYFCVAISFSDRNSVVGAWQQQDTRFVYDLNTGTIQFVPENCAN****
HEKNYFYTVDVLFGTPSKSEFLLFDTGSYLIWTQCLPCVNCFNQSAPIFNPNASSTYKRIPCDDLICRRPPFRCENGQCVHRINYAGGASASGLVSTETFTFHLKNKLVCVPGVIFGCSNDNRDFSFDGNIAGILGFSVSPFSLLGQLKSTAQGLFSYCLVYAYREMEATSILRFGKDANIQRKDMKTIRMFVDRSSHYYLSLQDISVADHRIGFAPGTFALRRNGTGGCMIDTGAIATFIQRGPYEVVMRHFDEHFTSFGRQRMHNASEDWEYCYRYDSRFRAYASMTFHFDRADFKVEPTYMYFIFQNEGYFCVAISFSDRNSVVGAWQQQDTRFVYDLNTGTIQFVPENCANDHFL
*EKNYFYTVDVLFGTPSKSEFLLFDTGSYLIWTQCLPCVNCFNQSAPIFNPNASSTYKRIPCDDLICRRPPFRCENGQCVHRINYAGGASASGLVSTETFTFHLKNKLVCVPGVIFGCSNDNRDFSFDGNIAGILGFSVSPFSLLGQLKSTAQGLFSYCLVYAYREMEATSILRFGKDANIQRKDMKTIRMFVDRSSHYYLSLQDISVADHRIGFAPGTFALRRNGTGGCMIDTGAIATFIQRGPYEVVMRHFDEHFTSFGRQRMHNASEDWEYCYRYDSRFRAYASMTFHFDRADFKVEPTYMYFIFQNEGYFCVAISFSDRNSVVGAWQQQDTRFVYDLNTGTIQFVPENCA*****
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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HEKNYFYTVDVLFGTPSKSEFLLFDTGSYLIWTQCLPCVNCFNQSAPIFNPNASSTYKRIPCDDLICRRPPFRCENGQCVHRINYAGGASASGLVSTETFTFHLKNKLVCVPGVIFGCSNDNRDFSFDGNIAGILGFSVSPFSLLGQLKSTAQGLFSYCLVYAYREMEATSILRFGKDANIQRKDMKTIRMFVDRSSHYYLSLQDISVADHRIGFAPGTFALRRNGTGGCMIDTGAIATFIQRGPYEVVMRHFDEHFTSFGRQRMHNASEDWEYCYRYDSRFRAYASMTFHFDRADFKVEPTYMYFIFQNEGYFCVAISFSDRNSVVGAWQQQDTRFVYDLNTGTIQFVPENCANDHFL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query359 2.2.26 [Sep-21-2011]
Q766C2438 Aspartic proteinase nepen N/A no 0.935 0.767 0.325 5e-49
Q766C3437 Aspartic proteinase nepen N/A no 0.935 0.768 0.325 7e-47
Q3EBM5447 Probable aspartic proteas no no 0.952 0.765 0.292 1e-35
Q9LS40500 Protein ASPARTIC PROTEASE no no 0.916 0.658 0.306 3e-33
Q6XBF8437 Aspartic proteinase CDR1 no no 0.944 0.775 0.281 4e-32
Q9LHE3470 Protein ASPARTIC PROTEASE no no 0.935 0.714 0.273 3e-28
Q9S9K4475 Aspartic proteinase-like no no 0.916 0.692 0.259 9e-20
A2ZC67410 Aspartic proteinase Asp1 N/A no 0.919 0.804 0.239 2e-14
Q0IU52410 Aspartic proteinase Asp1 no no 0.910 0.797 0.253 8e-14
Q9LX20528 Aspartic proteinase-like no no 0.916 0.623 0.221 2e-12
>sp|Q766C2|NEP2_NEPGR Aspartic proteinase nepenthesin-2 OS=Nepenthes gracilis GN=nep2 PE=1 SV=1 Back     alignment and function desciption
 Score =  195 bits (495), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 115/353 (32%), Positives = 170/353 (48%), Gaps = 17/353 (4%)

Query: 7   YTVDVLFGTPSKSEFLLFDTGSYLIWTQCLPCVNCFNQSAPIFNPNASSTYKRIPCDDLI 66
           Y ++V  GTP  S   + DTGS LIWTQC PC  CF+Q  PIFNP  SS++  +PC+   
Sbjct: 96  YLMNVAIGTPDSSFSAIMDTGSDLIWTQCEPCTQCFSQPTPIFNPQDSSSFSTLPCESQY 155

Query: 67  CRR-PPFRCENGQCVHRINYAGGASASGLVSTETFTFHLKNKLVCVPGVIFGCSNDNRDF 125
           C+  P   C N +C +   Y  G++  G ++TETFTF   +    VP + FGC  DN+ F
Sbjct: 156 CQDLPSETCNNNECQYTYGYGDGSTTQGYMATETFTFETSS----VPNIAFGCGEDNQGF 211

Query: 126 SFDGNIAGILGFSVSPFSLLGQLKSTAQGLFSYCLVYAYREMEATSILRFGKDANIQRKD 185
              GN AG++G    P SL  QL     G FSYC+        +T  L        +   
Sbjct: 212 G-QGNGAGLIGMGWGPLSLPSQL---GVGQFSYCMTSYGSSSPSTLALGSAASGVPEGSP 267

Query: 186 MKTIRMFVDRSSHYYLSLQDISVADHRIGFAPGTFALRRNGTGGCMIDTGAIATFIQRGP 245
             T+       ++YY++LQ I+V    +G    TF L+ +GTGG +ID+G   T++ +  
Sbjct: 268 STTLIHSSLNPTYYYITLQGITVGGDNLGIPSSTFQLQDDGTGGMIIDSGTTLTYLPQDA 327

Query: 246 YEVVMRHFDEHFTSFGRQRMHNASEDWEYCYRY--DSRFRAYASMTFHFDRADFKVEPTY 303
           Y  V + F +         +  +S     C++   D        ++  FD     +    
Sbjct: 328 YNAVAQAFTDQIN---LPTVDESSSGLSTCFQQPSDGSTVQVPEISMQFDGGVLNLGEQN 384

Query: 304 MYFIFQNEGYFCVAISFSDR--NSVVGAWQQQDTRFVYDLNTGTIQFVPENCA 354
           +  I   EG  C+A+  S +   S+ G  QQQ+T+ +YDL    + FVP  C 
Sbjct: 385 I-LISPAEGVICLAMGSSSQLGISIFGNIQQQETQVLYDLQNLAVSFVPTQCG 436
Extracellular proteinase found in the pitcher fluid of carnivorous plants. Digest prey for nitrogen uptake.
Nepenthes gracilis (taxid: 150966)
EC: 3EC: .EC: 4EC: .EC: 2EC: 3EC: .EC: 1EC: 2
>sp|Q766C3|NEP1_NEPGR Aspartic proteinase nepenthesin-1 OS=Nepenthes gracilis GN=nep1 PE=1 SV=1 Back     alignment and function description
>sp|Q3EBM5|ASPR1_ARATH Probable aspartic protease At2g35615 OS=Arabidopsis thaliana GN=At2g35615 PE=3 SV=1 Back     alignment and function description
>sp|Q9LS40|ASPG1_ARATH Protein ASPARTIC PROTEASE IN GUARD CELL 1 OS=Arabidopsis thaliana GN=ASPG1 PE=1 SV=1 Back     alignment and function description
>sp|Q6XBF8|CDR1_ARATH Aspartic proteinase CDR1 OS=Arabidopsis thaliana GN=CDR1 PE=1 SV=1 Back     alignment and function description
>sp|Q9LHE3|ASPG2_ARATH Protein ASPARTIC PROTEASE IN GUARD CELL 2 OS=Arabidopsis thaliana GN=ASPG2 PE=2 SV=1 Back     alignment and function description
>sp|Q9S9K4|ASPL2_ARATH Aspartic proteinase-like protein 2 OS=Arabidopsis thaliana GN=At1g65240 PE=1 SV=2 Back     alignment and function description
>sp|A2ZC67|ASP1_ORYSI Aspartic proteinase Asp1 OS=Oryza sativa subsp. indica GN=ASP1 PE=2 SV=2 Back     alignment and function description
>sp|Q0IU52|ASP1_ORYSJ Aspartic proteinase Asp1 OS=Oryza sativa subsp. japonica GN=ASP1 PE=2 SV=1 Back     alignment and function description
>sp|Q9LX20|ASPL1_ARATH Aspartic proteinase-like protein 1 OS=Arabidopsis thaliana GN=At5g10080 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query359
255563741448 Aspartic proteinase nepenthesin-2 precur 0.961 0.770 0.392 6e-59
255563739414 DNA binding protein, putative [Ricinus c 0.871 0.756 0.356 2e-48
61214232438 RecName: Full=Aspartic proteinase nepent 0.935 0.767 0.325 3e-47
409179880437 aspartic proteinase nepenthesin 2 [Nepen 0.935 0.768 0.323 5e-47
116790042 460 unknown [Picea sitchensis] 0.949 0.741 0.329 7e-47
326494754449 predicted protein [Hordeum vulgare subsp 0.927 0.741 0.328 1e-45
297817972 462 aspartyl protease family protein [Arabid 0.938 0.729 0.329 2e-45
449523529 461 PREDICTED: aspartic proteinase nepenthes 0.947 0.737 0.337 3e-45
20197342353 putative chloroplast nucleoid DNA bindin 0.919 0.934 0.333 3e-45
30678047 461 aspartyl protease-like protein [Arabidop 0.938 0.731 0.329 3e-45
>gi|255563741|ref|XP_002522872.1| Aspartic proteinase nepenthesin-2 precursor, putative [Ricinus communis] gi|223537956|gb|EEF39570.1| Aspartic proteinase nepenthesin-2 precursor, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  234 bits (596), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 142/362 (39%), Positives = 199/362 (54%), Gaps = 17/362 (4%)

Query: 7   YTVDVLFGTPSKSEFLLFDTGSYLIWTQCLPCVNCFNQSAPIFNPNASSTYKRIPCDDLI 66
           Y V V+ G+P    +L+ DTGS L WTQC PC   F Q  PIFN  AS TY+ +PC    
Sbjct: 91  YLVKVIIGSPGVPLYLVPDTGSGLFWTQCEPCTRRFRQLPPIFNSTASRTYRDLPCQHQF 150

Query: 67  C--RRPPFRCENGQCVHRINYAGGASASGLVSTETFTFHLKNKLVCVPGVIFGCSNDNRD 124
           C   +  F+C + +CV+RI YAGG++ +G+ + +       +++       FGCS DN++
Sbjct: 151 CTNNQNVFQCRDDKCVYRIAYAGGSATAGVAAQDILQSAENDRI----PFYFGCSRDNQN 206

Query: 125 FS---FDGNIAGILGFSVSPFSLLGQLKSTAQGLFSYCLVY--AYREMEATSILRFGKDA 179
           FS     G   GI+G ++SP SLL Q+    +  FSYCL          ATS+LRFG D 
Sbjct: 207 FSTFESSGKGGGIIGLNMSPVSLLQQMNHITKNRFSYCLNLFDLSSPSHATSLLRFGNDI 266

Query: 180 NIQRKDMKTIRMFVDRS-SHYYLSLQDISVADHRIGFAPGTFALRRNGTGGCMIDTGAIA 238
              R+   +      R   +Y+L+L D+SVA +R+   PGTFAL+ +GTGG +ID+G   
Sbjct: 267 RKSRRKYLSTPFVSPRGMPNYFLNLIDVSVAGNRMQIPPGTFALKPDGTGGTIIDSGTAV 326

Query: 239 TFIQRGPYEVVMRHFDEHFTSFGRQRMHNASEDWEYCYRYDSR-FRAYASMTFHFDRADF 297
           T+I +  Y  V+  F  +F   G QR+ N       CY+     F  Y SM FHF  ADF
Sbjct: 327 TYISQTAYFPVITAFKNYFDQHGFQRV-NIQLSGYICYKQQGHTFHNYPSMAFHFQGADF 385

Query: 298 KVEPTYMYFIFQNEGYFCVAIS--FSDRNSVVGAWQQQDTRFVYDLNTGTIQFVPENCAN 355
            VEP Y+Y   Q+ G FCVA+      + +++GA  Q +T+F+YD     + F PENC  
Sbjct: 386 FVEPEYVYLTVQDRGAFCVALQPISPQQRTIIGALNQANTQFIYDAANRQLLFTPENC-Q 444

Query: 356 DH 357
           DH
Sbjct: 445 DH 446

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255563739|ref|XP_002522871.1| DNA binding protein, putative [Ricinus communis] gi|223537955|gb|EEF39569.1| DNA binding protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|61214232|sp|Q766C2.1|NEP2_NEPGR RecName: Full=Aspartic proteinase nepenthesin-2; AltName: Full=Nepenthesin-II; Flags: Precursor gi|41016423|dbj|BAD07475.1| aspartic proteinase nepenthesin II [Nepenthes gracilis] Back     alignment and taxonomy information
>gi|409179880|gb|AFV26025.1| aspartic proteinase nepenthesin 2 [Nepenthes mirabilis] Back     alignment and taxonomy information
>gi|116790042|gb|ABK25480.1| unknown [Picea sitchensis] Back     alignment and taxonomy information
>gi|326494754|dbj|BAJ94496.1| predicted protein [Hordeum vulgare subsp. vulgare] gi|326514480|dbj|BAJ96227.1| predicted protein [Hordeum vulgare subsp. vulgare] Back     alignment and taxonomy information
>gi|297817972|ref|XP_002876869.1| aspartyl protease family protein [Arabidopsis lyrata subsp. lyrata] gi|297322707|gb|EFH53128.1| aspartyl protease family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|449523529|ref|XP_004168776.1| PREDICTED: aspartic proteinase nepenthesin-1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|20197342|gb|AAC34482.2| putative chloroplast nucleoid DNA binding protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|30678047|ref|NP_565298.2| aspartyl protease-like protein [Arabidopsis thaliana] gi|30102688|gb|AAP21262.1| At2g03200 [Arabidopsis thaliana] gi|110736021|dbj|BAE99983.1| putative chloroplast nucleoid DNA binding protein [Arabidopsis thaliana] gi|330250580|gb|AEC05674.1| aspartyl protease-like protein [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query359
TAIR|locus:2056916461 AT2G03200 [Arabidopsis thalian 0.930 0.724 0.331 3e-46
TAIR|locus:2206184445 AT1G31450 [Arabidopsis thalian 0.963 0.777 0.289 1.6e-40
TAIR|locus:2035297485 AT1G01300 [Arabidopsis thalian 0.933 0.690 0.331 1.8e-39
TAIR|locus:2077700535 AT3G59080 "AT3G59080" [Arabido 0.958 0.642 0.302 2.9e-39
TAIR|locus:2045615527 AT2G42980 [Arabidopsis thalian 0.688 0.468 0.327 4.2e-39
TAIR|locus:504955954447 AT2G35615 [Arabidopsis thalian 0.958 0.769 0.291 7.8e-39
TAIR|locus:2010786431 AT1G64830 [Arabidopsis thalian 0.944 0.786 0.291 5.5e-38
TAIR|locus:2095042500 ASPG1 "ASPARTIC PROTEASE IN GU 0.916 0.658 0.314 5.5e-38
TAIR|locus:2126495424 AT4G30030 [Arabidopsis thalian 0.919 0.778 0.306 1.9e-37
TAIR|locus:2076745483 AT3G61820 [Arabidopsis thalian 0.935 0.695 0.312 1.3e-36
TAIR|locus:2056916 AT2G03200 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 485 (175.8 bits), Expect = 3.0e-46, P = 3.0e-46
 Identities = 121/365 (33%), Positives = 185/365 (50%)

Query:     7 YTVDVLFGTPSKSEFLLFDTGSYLIWTQCLPCVNCFNQSAPIFNPNASSTYKRIPCDDLI 66
             + +++  G P+     + DTGS LIWTQC PC  CF+Q  PIF+P  SS+Y ++ C   +
Sbjct:   107 FLMELSIGNPAVKYSAIVDTGSDLIWTQCKPCTECFDQPTPIFDPEKSSSYSKVGCSSGL 166

Query:    67 CRR-PPFRCENGQ--CVHRINYAGGASASGLVSTETFTFHLKNKLVCVPGVIFGCSNDNR 123
             C   P   C   +  C +   Y   +S  GL++TETFTF  +N    + G+ FGC  +N 
Sbjct:   167 CNALPRSNCNEDKDACEYLYTYGDYSSTRGLLATETFTFEDENS---ISGIGFGCGVENE 223

Query:   124 DFSFDGNIAGILGFSVSPFSLLGQLKSTAQGLFSYCLVYAYREMEATSILRFGK------ 177
                F    +G++G    P SL+ QLK T    FSYCL  +  + EA+S L  G       
Sbjct:   224 GDGFSQG-SGLVGLGRGPLSLISQLKETK---FSYCLT-SIEDSEASSSLFIGSLASGIV 278

Query:   178 ---DANIQRKDMKTIRMF--VDRSSHYYLSLQDISVADHRIGFAPGTFALRRNGTGGCMI 232
                 A++  +  KT+ +    D+ S YYL LQ I+V   R+     TF L  +GTGG +I
Sbjct:   279 NKTGASLDGEVTKTMSLLRNPDQPSFYYLELQGITVGAKRLSVEKSTFELAEDGTGGMII 338

Query:   233 DTGAIATFIQRGPYEVVMRHFDEHFTSFGRQRMHNA-SEDWEYCYRYDSRFR--AYASMT 289
             D+G   T+++   ++V+     E FTS     + ++ S   + C++     +  A   M 
Sbjct:   339 DSGTTITYLEETAFKVLK----EEFTSRMSLPVDDSGSTGLDLCFKLPDAAKNIAVPKMI 394

Query:   290 FHFDRADFKVEPTYMYFIFQNE-GYFCVAISFSDRNSVVGAWQQQDTRFVYDLNTGTIQF 348
             FHF  AD ++ P   Y +  +  G  C+A+  S+  S+ G  QQQ+   ++DL   T+ F
Sbjct:   395 FHFKGADLEL-PGENYMVADSSTGVLCLAMGSSNGMSIFGNVQQQNFNVLHDLEKETVSF 453

Query:   349 VPENC 353
             VP  C
Sbjct:   454 VPTEC 458
GO:0004190 "aspartic-type endopeptidase activity" evidence=IEA
GO:0005576 "extracellular region" evidence=ISM
GO:0006508 "proteolysis" evidence=IEA;ISS
GO:0000041 "transition metal ion transport" evidence=RCA
GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA
GO:0010413 "glucuronoxylan metabolic process" evidence=RCA
GO:0016926 "protein desumoylation" evidence=RCA
GO:0045492 "xylan biosynthetic process" evidence=RCA
GO:0050665 "hydrogen peroxide biosynthetic process" evidence=RCA
TAIR|locus:2206184 AT1G31450 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2035297 AT1G01300 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2077700 AT3G59080 "AT3G59080" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2045615 AT2G42980 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:504955954 AT2G35615 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2010786 AT1G64830 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2095042 ASPG1 "ASPARTIC PROTEASE IN GUARD CELL 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2126495 AT4G30030 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2076745 AT3G61820 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.4.230.691
3rd Layer3.4.23.12LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query359
cd05476265 cd05476, pepsin_A_like_plant, Chroloplast Nucleoid 1e-56
PLN03146431 PLN03146, PLN03146, aspartyl protease family prote 1e-51
cd05472299 cd05472, cnd41_like, Chloroplast Nucleoids DNA-bin 1e-38
cd05471283 cd05471, pepsin_like, Pepsin-like aspartic proteas 3e-32
cd06096326 cd06096, Plasmepsin_5, Plasmepsins are a class of 1e-12
cd05489362 cd05489, xylanase_inhibitor_I_like, TAXI-I inhibit 4e-12
cd05475273 cd05475, nucellin_like, Nucellins, plant aspartic 1e-11
pfam00026316 pfam00026, Asp, Eukaryotic aspartyl protease 2e-10
cd05470109 cd05470, pepsin_retropepsin_like, Cellular and ret 4e-10
cd06097278 cd06097, Aspergillopepsin_like, Aspergillopepsin_l 3e-09
cd05477318 cd05477, gastricsin, Gastricsins, asparate proteas 3e-04
cd05478317 cd05478, pepsin_A, Pepsin A, aspartic protease pro 4e-04
PTZ00165482 PTZ00165, PTZ00165, aspartyl protease; Provisional 4e-04
>gnl|CDD|133143 cd05476, pepsin_A_like_plant, Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants Back     alignment and domain information 
 Score =  185 bits (471), Expect = 1e-56
 Identities = 105/352 (29%), Positives = 147/352 (41%), Gaps = 93/352 (26%)

Query: 7   YTVDVLFGTPSKSEFLLFDTGSYLIWTQCLPCVNCFNQSAPIFNPNASSTYKRIPCDDLI 66
           Y V +  GTP +   L+ DTGS L WTQC                               
Sbjct: 2   YLVTLSIGTPPQPFSLIVDTGSDLTWTQC------------------------------- 30

Query: 67  CRRPPFRCENGQCVHRINYAGGASASGLVSTETFTFHLKNKLVCVPGVIFGCSNDNRDFS 126
                       C +  +Y  G+S SG+++TETFTF   +  V  P V FGC  DN   S
Sbjct: 31  ------------CSYEYSYGDGSSTSGVLATETFTFGDSSVSV--PNVAFGCGTDNEGGS 76

Query: 127 FDGNIAGILGFSVSPFSLLGQLKSTAQGLFSYCLVYAYREMEATSILRFGKDANIQRKDM 186
           F G   GILG    P SL+ QL ST    FSYCLV  + +   +S L  G  A++    +
Sbjct: 77  FGGA-DGILGLGRGPLSLVSQLGSTG-NKFSYCLV-PHDDTGGSSPLILGDAADLGGSGV 133

Query: 187 KTIRMFVD--RSSHYYLSLQDISVADHRIGFAPGTFALRRNGTGGCMIDTGAIATFIQRG 244
               +  +    ++YY++L+ ISV   R+   P  FA+  +G+GG +ID+G   T++   
Sbjct: 134 VYTPLVKNPANPTYYYVNLEGISVGGKRLPIPPSVFAIDSDGSGGTIIDSGTTLTYLPDP 193

Query: 245 PYEVVMRHFDEHFTSFGRQRMHNASEDWEYCYRYDSRFRAYASMTFHFD-RADFKVEPTY 303
                                                  AY  +T HFD  AD ++ P  
Sbjct: 194 ---------------------------------------AYPDLTLHFDGGADLEL-PPE 213

Query: 304 MYFIFQNEGYFCVAI--SFSDRNSVVGAWQQQDTRFVYDLNTGTIQFVPENC 353
            YF+   EG  C+AI  S S   S++G  QQQ+    YDL    + F P +C
Sbjct: 214 NYFVDVGEGVVCLAILSSSSGGVSILGNIQQQNFLVEYDLENSRLGFAPADC 265

This family contains pepsin like aspartic proteases from plants including Chloroplast Nucleoids DNA-binding Protease and Nucellin. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco and Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The enzymes specifically cleave bonds in peptides which have at least six residues in length with hydrophobic residues in both the P1 and P1' positions. The active site is located at the groove formed by the two lobes, with an extended loop projecting over the cleft to form an 11-residue flap, which encloses substrates and inhibitors in the active site. Specificity is determined by nearest-neighbor hydrophobic residues surrounding the catalytic aspartates, and by three residues in the flap. The enzymes are mostly secreted from cells as inactive proenzymes that activate autocatalytically at acidic pH. Length = 265
>gnl|CDD|178691 PLN03146, PLN03146, aspartyl protease family protein; Provisional Back     alignment and domain information
>gnl|CDD|133139 cd05472, cnd41_like, Chloroplast Nucleoids DNA-binding Protease, catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase Back     alignment and domain information
>gnl|CDD|133138 cd05471, pepsin_like, Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH Back     alignment and domain information
>gnl|CDD|133160 cd06096, Plasmepsin_5, Plasmepsins are a class of aspartic proteinases produced by the plasmodium parasite Back     alignment and domain information
>gnl|CDD|133156 cd05489, xylanase_inhibitor_I_like, TAXI-I inhibits degradation of xylan in the cell wall Back     alignment and domain information
>gnl|CDD|133142 cd05475, nucellin_like, Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation Back     alignment and domain information
>gnl|CDD|215663 pfam00026, Asp, Eukaryotic aspartyl protease Back     alignment and domain information
>gnl|CDD|133137 cd05470, pepsin_retropepsin_like, Cellular and retroviral pepsin-like aspartate proteases Back     alignment and domain information
>gnl|CDD|133161 cd06097, Aspergillopepsin_like, Aspergillopepsin_like, aspartic proteases of fungal origin Back     alignment and domain information
>gnl|CDD|133144 cd05477, gastricsin, Gastricsins, asparate proteases produced in gastric mucosa Back     alignment and domain information
>gnl|CDD|133145 cd05478, pepsin_A, Pepsin A, aspartic protease produced in gastric mucosa of mammals Back     alignment and domain information
>gnl|CDD|240300 PTZ00165, PTZ00165, aspartyl protease; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 359
PLN03146431 aspartyl protease family protein; Provisional 100.0
cd05478317 pepsin_A Pepsin A, aspartic protease produced in g 100.0
PTZ00165482 aspartyl protease; Provisional 100.0
cd05490325 Cathepsin_D2 Cathepsin_D2, pepsin family of protei 100.0
cd06096326 Plasmepsin_5 Plasmepsins are a class of aspartic p 100.0
cd05477318 gastricsin Gastricsins, asparate proteases produce 100.0
KOG1339398 consensus Aspartyl protease [Posttranslational mod 100.0
cd05486316 Cathespin_E Cathepsin E, non-lysosomal aspartic pr 100.0
cd05472299 cnd41_like Chloroplast Nucleoids DNA-binding Prote 100.0
cd05488320 Proteinase_A_fungi Fungal Proteinase A , aspartic 100.0
cd05487326 renin_like Renin stimulates production of angioten 100.0
cd06098317 phytepsin Phytepsin, a plant homolog of mammalian 100.0
cd05485329 Cathepsin_D_like Cathepsin_D_like, pepsin family o 100.0
PTZ00147453 plasmepsin-1; Provisional 100.0
PTZ00013450 plasmepsin 4 (PM4); Provisional 100.0
cd05473364 beta_secretase_like Beta-secretase, aspartic-acid 100.0
cd05476265 pepsin_A_like_plant Chroloplast Nucleoids DNA-bind 100.0
cd06097278 Aspergillopepsin_like Aspergillopepsin_like, aspar 100.0
cd05475273 nucellin_like Nucellins, plant aspartic proteases 100.0
cd05489362 xylanase_inhibitor_I_like TAXI-I inhibits degradat 100.0
PF00026317 Asp: Eukaryotic aspartyl protease The Prosite entr 100.0
cd05474295 SAP_like SAPs, pepsin-like proteinases secreted fr 100.0
cd05471283 pepsin_like Pepsin-like aspartic proteases, biloba 100.0
PF14543164 TAXi_N: Xylanase inhibitor N-terminal; PDB: 3HD8_A 99.96
PF14541161 TAXi_C: Xylanase inhibitor C-terminal; PDB: 3AUP_D 99.93
cd05470109 pepsin_retropepsin_like Cellular and retroviral pe 99.9
cd0548396 retropepsin_like_bacteria Bacterial aspartate prot 98.13
TIGR02281121 clan_AA_DTGA clan AA aspartic protease, TIGR02281 97.33
PF1365090 Asp_protease_2: Aspartyl protease 96.68
cd05479124 RP_DDI RP_DDI; retropepsin-like domain of DNA dama 96.14
cd05479124 RP_DDI RP_DDI; retropepsin-like domain of DNA dama 95.1
PF08284135 RVP_2: Retroviral aspartyl protease; InterPro: IPR 95.03
cd0548491 retropepsin_like_LTR_2 Retropepsins_like_LTR, peps 92.75
COG3577215 Predicted aspartyl protease [General function pred 91.95
PF1397572 gag-asp_proteas: gag-polyprotein putative aspartyl 91.36
PF11925370 DUF3443: Protein of unknown function (DUF3443); In 89.5
TIGR02281121 clan_AA_DTGA clan AA aspartic protease, TIGR02281 89.25
PF00077100 RVP: Retroviral aspartyl protease The Prosite entr 86.55
TIGR03698107 clan_AA_DTGF clan AA aspartic protease, AF_0612 fa 86.09
PF1365090 Asp_protease_2: Aspartyl protease 85.1
PF1397572 gag-asp_proteas: gag-polyprotein putative aspartyl 84.05
PF12384177 Peptidase_A2B: Ty3 transposon peptidase; InterPro: 82.66
cd0548491 retropepsin_like_LTR_2 Retropepsins_like_LTR, peps 81.47
cd0609586 RP_RTVL_H_like Retropepsin of the RTVL_H family of 80.82
>PLN03146 aspartyl protease family protein; Provisional Back     alignment and domain information 
Probab=100.00  E-value=1e-61  Score=460.16  Aligned_cols=346  Identities=30%  Similarity=0.572  Sum_probs=288.6

Q ss_pred             CCcceEEEEEEeCCCCcEEEEEEEcCCCceeEeCCCCCCCCCCCCCCCCCCCCCCceeecCCCCCCCCCC--CCCC-CCC
Q 045061            2 EKNYFYTVDVLFGTPSKSEFLLFDTGSYLIWTQCLPCVNCFNQSAPIFNPNASSTYKRIPCDDLICRRPP--FRCE-NGQ   78 (359)
Q Consensus         2 ~~~~~y~~~i~iGtp~Q~~~l~~DTgS~~~wv~~~~c~~c~~~~~~~y~~~~Sst~~~~~~~~~~c~~~~--~~c~-~~~   78 (359)
                      +++++|+++|.||||||++.|++||||+++||+|.+|..|..+.++.|||++|+||+...|.++.|....  ..|. ++.
T Consensus        80 ~~~~~Y~v~i~iGTPpq~~~vi~DTGS~l~Wv~C~~C~~C~~~~~~~fdps~SST~~~~~C~s~~C~~~~~~~~c~~~~~  159 (431)
T PLN03146         80 SNGGEYLMNISIGTPPVPILAIADTGSDLIWTQCKPCDDCYKQVSPLFDPKKSSTYKDVSCDSSQCQALGNQASCSDENT  159 (431)
T ss_pred             cCCccEEEEEEcCCCCceEEEEECCCCCcceEcCCCCcccccCCCCcccCCCCCCCcccCCCCcccccCCCCCCCCCCCC
Confidence            4678999999999999999999999999999999999999988899999999999999999999998732  2475 456


Q ss_pred             ceEEEEeCCCCeEEEEEEEEEEEEecCC-ceeecCceEEEceeCCCCCCCCCCcceEEecCCCCCchHHhhhhcCCCceE
Q 045061           79 CVHRINYAGGASASGLVSTETFTFHLKN-KLVCVPGVIFGCSNDNRDFSFDGNIAGILGFSVSPFSLLGQLKSTAQGLFS  157 (359)
Q Consensus        79 ~~~~~~y~~g~~~~G~~~~D~v~i~~~~-~~~~~~~~~fg~~~~~~~~~~~~~~~GilGLg~~~~s~~~ql~~~~~~~fs  157 (359)
                      |.|.+.|++|+.+.|.+++|+|+|++.. ..+.++++.|||++...+ .+....+||||||+...|++.|+.....++||
T Consensus       160 c~y~i~Ygdgs~~~G~l~~Dtltlg~~~~~~~~v~~~~FGc~~~~~g-~f~~~~~GilGLG~~~~Sl~sql~~~~~~~FS  238 (431)
T PLN03146        160 CTYSYSYGDGSFTKGNLAVETLTIGSTSGRPVSFPGIVFGCGHNNGG-TFDEKGSGIVGLGGGPLSLISQLGSSIGGKFS  238 (431)
T ss_pred             CeeEEEeCCCCceeeEEEEEEEEeccCCCCcceeCCEEEeCCCCCCC-CccCCCceeEecCCCCccHHHHhhHhhCCcEE
Confidence            9999999999878999999999998642 235688999999998776 54346899999999999999998865567999


Q ss_pred             EeccccCCCCCcceeEEECCCCccCCCCceeeeeecCC-CCcEEEEEeEEEECCEEeecCCCccccccCCCCcEEEecCC
Q 045061          158 YCLVYAYREMEATSILRFGKDANIQRKDMKTIRMFVDR-SSHYYLSLQDISVADHRIGFAPGTFALRRNGTGGCMIDTGA  236 (359)
Q Consensus       158 ~~l~~~~~~~~~~g~l~~Gg~d~~~~~~i~~~~~~~~~-~~~w~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~~iiDtGt  236 (359)
                      +||.+...+....|.|+||+........+.|+|++... ..+|.|.|++|+||++++.++...+.  ..+.+.+||||||
T Consensus       239 ycL~~~~~~~~~~g~l~fG~~~~~~~~~~~~tPl~~~~~~~~y~V~L~gIsVgg~~l~~~~~~~~--~~~~g~~iiDSGT  316 (431)
T PLN03146        239 YCLVPLSSDSNGTSKINFGTNAIVSGSGVVSTPLVSKDPDTFYYLTLEAISVGSKKLPYTGSSKN--GVEEGNIIIDSGT  316 (431)
T ss_pred             EECCCCCCCCCCcceEEeCCccccCCCCceEcccccCCCCCeEEEeEEEEEECCEECcCCccccc--cCCCCcEEEeCCc
Confidence            99976443334589999999633333458999998532 57899999999999999887665543  2334579999999


Q ss_pred             cccccCchHHHHHHHHHHHHhhccCccccCCCccccccceecccCccccceEEEEEcCcEEEEcCCceEEEEcCCCeEEE
Q 045061          237 IATFIQRGPYEVVMRHFDEHFTSFGRQRMHNASEDWEYCYRYDSRFRAYASMTFHFDRADFKVEPTYMYFIFQNEGYFCV  316 (359)
Q Consensus       237 ~~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~p~l~~~f~g~~~~i~~~~y~~~~~~~~~~C~  316 (359)
                      ++++||+++|++|.+++...+....   ..........|+.... ...+|+|+|+|+|+.+.|+|++|++... ++..|+
T Consensus       317 t~t~Lp~~~y~~l~~~~~~~~~~~~---~~~~~~~~~~C~~~~~-~~~~P~i~~~F~Ga~~~l~~~~~~~~~~-~~~~Cl  391 (431)
T PLN03146        317 TLTLLPSDFYSELESAVEEAIGGER---VSDPQGLLSLCYSSTS-DIKLPIITAHFTGADVKLQPLNTFVKVS-EDLVCF  391 (431)
T ss_pred             cceecCHHHHHHHHHHHHHHhcccc---CCCCCCCCCccccCCC-CCCCCeEEEEECCCeeecCcceeEEEcC-CCcEEE
Confidence            9999999999999999988775321   1122234578987432 2479999999999999999999999765 567899


Q ss_pred             EEEcCCCceeecccceeeeEEEEECCCCEEEEeeCCCCC
Q 045061          317 AISFSDRNSVVGAWQQQDTRFVYDLNTGTIQFVPENCAN  355 (359)
Q Consensus       317 ~~~~~~~~~iLG~~fl~~~y~vfD~~~~~igfa~~~c~~  355 (359)
                      ++....+.+|||+.|||++|+|||.+++|||||+.+|..
T Consensus       392 ~~~~~~~~~IlG~~~q~~~~vvyDl~~~~igFa~~~C~~  430 (431)
T PLN03146        392 AMIPTSSIAIFGNLAQMNFLVGYDLESKTVSFKPTDCTK  430 (431)
T ss_pred             EEecCCCceEECeeeEeeEEEEEECCCCEEeeecCCcCc
Confidence            988766779999999999999999999999999999975

>cd05478 pepsin_A Pepsin A, aspartic protease produced in gastric mucosa of mammals Back     alignment and domain information
>PTZ00165 aspartyl protease; Provisional Back     alignment and domain information
>cd05490 Cathepsin_D2 Cathepsin_D2, pepsin family of proteinases Back     alignment and domain information
>cd06096 Plasmepsin_5 Plasmepsins are a class of aspartic proteinases produced by the plasmodium parasite Back     alignment and domain information
>cd05477 gastricsin Gastricsins, asparate proteases produced in gastric mucosa Back     alignment and domain information
>KOG1339 consensus Aspartyl protease [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd05486 Cathespin_E Cathepsin E, non-lysosomal aspartic protease Back     alignment and domain information
>cd05472 cnd41_like Chloroplast Nucleoids DNA-binding Protease, catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase Back     alignment and domain information
>cd05488 Proteinase_A_fungi Fungal Proteinase A , aspartic proteinase superfamily Back     alignment and domain information
>cd05487 renin_like Renin stimulates production of angiotensin and thus affects blood pressure Back     alignment and domain information
>cd06098 phytepsin Phytepsin, a plant homolog of mammalian lysosomal pepsins Back     alignment and domain information
>cd05485 Cathepsin_D_like Cathepsin_D_like, pepsin family of proteinases Back     alignment and domain information
>PTZ00147 plasmepsin-1; Provisional Back     alignment and domain information
>PTZ00013 plasmepsin 4 (PM4); Provisional Back     alignment and domain information
>cd05473 beta_secretase_like Beta-secretase, aspartic-acid protease important in the pathogenesis of Alzheimer's disease Back     alignment and domain information
>cd05476 pepsin_A_like_plant Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants Back     alignment and domain information
>cd06097 Aspergillopepsin_like Aspergillopepsin_like, aspartic proteases of fungal origin Back     alignment and domain information
>cd05475 nucellin_like Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation Back     alignment and domain information
>cd05489 xylanase_inhibitor_I_like TAXI-I inhibits degradation of xylan in the cell wall Back     alignment and domain information
>PF00026 Asp: Eukaryotic aspartyl protease The Prosite entry also includes Pfam:PF00077 Back     alignment and domain information
>cd05474 SAP_like SAPs, pepsin-like proteinases secreted from pathogens to degrade host proteins Back     alignment and domain information
>cd05471 pepsin_like Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH Back     alignment and domain information
>PF14543 TAXi_N: Xylanase inhibitor N-terminal; PDB: 3HD8_A 3VLB_A 3VLA_A 3AUP_D 1T6G_A 1T6E_X 2B42_A Back     alignment and domain information
>PF14541 TAXi_C: Xylanase inhibitor C-terminal; PDB: 3AUP_D 3HD8_A 1T6G_A 1T6E_X 2B42_A 3VLB_A 3VLA_A Back     alignment and domain information
>cd05470 pepsin_retropepsin_like Cellular and retroviral pepsin-like aspartate proteases Back     alignment and domain information
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family Back     alignment and domain information
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family Back     alignment and domain information
>PF13650 Asp_protease_2: Aspartyl protease Back     alignment and domain information
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein Back     alignment and domain information
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein Back     alignment and domain information
>PF08284 RVP_2: Retroviral aspartyl protease; InterPro: IPR013242 This region defines single domain aspartyl proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses) Back     alignment and domain information
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases Back     alignment and domain information
>COG3577 Predicted aspartyl protease [General function prediction only] Back     alignment and domain information
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease Back     alignment and domain information
>PF11925 DUF3443: Protein of unknown function (DUF3443); InterPro: IPR021847 This family of proteins are functionally uncharacterised Back     alignment and domain information
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family Back     alignment and domain information
>PF00077 RVP: Retroviral aspartyl protease The Prosite entry also includes Pfam:PF00026; InterPro: IPR018061 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>TIGR03698 clan_AA_DTGF clan AA aspartic protease, AF_0612 family Back     alignment and domain information
>PF13650 Asp_protease_2: Aspartyl protease Back     alignment and domain information
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease Back     alignment and domain information
>PF12384 Peptidase_A2B: Ty3 transposon peptidase; InterPro: IPR024650 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases Back     alignment and domain information
>cd06095 RP_RTVL_H_like Retropepsin of the RTVL_H family of human endogenous retrovirus-like elements Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query359
3vlb_A413 Crystal Structure Of Xeg-Edgp Length = 413 6e-06
3vla_A413 Crystal Structure Of Edgp Length = 413 7e-06
1b5f_A239 Native Cardosin A From Cynara Cardunculus L. Length 3e-05
3apr_E325 Binding Of A Reduced Peptide Inhibitor To The Aspar 4e-04
1uh7_A325 Crystal Structure Of Rhizopuspepsin At Ph 4.6 Lengt 4e-04
>pdb|3VLB|A Chain A, Crystal Structure Of Xeg-Edgp Length = 413 Back     alignment and structure 
Iteration: 1

 Score = 48.1 bits (113), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 84/400 (21%), Positives = 140/400 (35%), Gaps = 74/400 (18%)
Query: 15  TPSKSEFLLFDTGSYLIWTQCLPCVNCFNQSAPIFNPNASSTYKRIPCDDLICRR----- 69
           TP  SE L+ D G   +W  C       +Q+        SSTY+ + C    C       
Sbjct: 30  TPLVSENLVVDLGGRFLWVDC-------DQNY------VSSTYRPVRCRTSQCSLSGSIA 76
Query: 70  -------PPFRCENGQCV-----HRINYA-GGASASGLVSTETFTFHLKNKLVCVPGVIF 116
                  P   C N  C        IN A GG  A  +VS E+       ++V VP  IF
Sbjct: 77  CGDCFNGPRPGCNNNTCGVFPENPVINTATGGEVAEDVVSVESTDGSSSGRVVTVPRFIF 136
Query: 117 GCSNDNRDFSFDGNIAGILGFSVSPFSLLGQLKS--TAQGLFSYCLVYAYREMEATSILR 174
            C+  +   +    + G+ G   +  +L  Q  S  + +  F+ CL        + S++ 
Sbjct: 137 SCAPTSLLQNLASGVVGMAGLGRTRIALPSQFASAFSFKRKFAMCL---SGSTSSNSVII 193
Query: 175 FGKDA-----NIQRKDMKTIRMFV---------------DRSSHYYLSLQDISVADHRIG 214
           FG D      NI   D KT+                   + S  Y++ ++ I +    + 
Sbjct: 194 FGNDPYTFLPNIIVSD-KTLTYTPLLTNPVSTSATSTQGEPSVEYFIGVKSIKINSKIVA 252
Query: 215 FAPGTFALRRNGTGGCMIDTGAIATFIQRGPYEVVMRHFDEHFTSFGRQRMHNASEDWEY 274
                 ++   G GG  I T    T ++   Y+ V   F +   +    R+ + +  +  
Sbjct: 253 LNTSLLSISSAGLGGTKISTINPYTVLETSIYKAVTEAFIKESAARNITRVASVAP-FGA 311
Query: 275 CYRYDSRFRAYASMTFHFDRADFKVEPTYMYF------IFQNEGYFCVAISFSDRN---- 324
           C+  D+        +        + E            ++ N+   C+ +     N    
Sbjct: 312 CFSTDNILSTRLGPSVPSIDLVLQSESVVWTITGSNSMVYINDNVVCLGVVDGGSNLRTS 371
Query: 325 SVVGAWQQQDTRFVYDLNT------GTIQFVPENCANDHF 358
            V+G  Q +D    +DL T      GT+      CAN +F
Sbjct: 372 IVIGGHQLEDNLVQFDLATSRVGFSGTLLGSRTTCANFNF 411
>pdb|3VLA|A Chain A, Crystal Structure Of Edgp Length = 413 Back     alignment and structure
>pdb|1B5F|A Chain A, Native Cardosin A From Cynara Cardunculus L. Length = 239 Back     alignment and structure
>pdb|3APR|E Chain E, Binding Of A Reduced Peptide Inhibitor To The Aspartic Proteinase From Rhizopus Chinensis. Implications For A Mechanism Of Action Length = 325 Back     alignment and structure
>pdb|1UH7|A Chain A, Crystal Structure Of Rhizopuspepsin At Ph 4.6 Length = 325 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query359
3aup_A403 SBG7S, BG, basic 7S globulin; pepsin-like fold, pl 3e-68
3vla_A413 EDGP; extracellular, inhibitor, plant protein; HET 5e-64
1t6e_X381 Xylanase inhibitor; two beta-barrel domain structu 1e-56
3psg_A370 Pepsinogen; hydrolase(acid proteinase zymogen); 1. 4e-13
1dpj_A329 Proteinase A; proteinase A, hydrolase-hydrolase in 7e-13
3pvk_A342 Candidapepsin-2; hydrolase; 1.27A {Candida albican 9e-13
1b5f_A239 Protein (cardosin A); hydrolase, aspartic proteina 1e-12
1htr_B329 Gastricsin; aspartyl protease; 1.62A {Homo sapiens 2e-12
2qzx_A342 Candidapepsin-5; aspartic proteinase, aspartyl pro 2e-12
1am5_A324 Pepsin, acid proteinase; aspartyl protease, hydrol 3e-12
1j71_A334 Candidapepsin, aspartic proteinase; candida tropic 3e-12
3fv3_A339 SAPP1P-secreted aspartic protease 1; secreted aspa 5e-12
1tzs_A351 Cathepsin E; hydrolase, aspartic protease, activat 5e-12
1qdm_A478 Prophytepsin; aspartic proteinases, saposin-like d 7e-12
3cms_A323 Chymosin B; hydrolase, acid proteinase; 2.00A {Bos 2e-11
3lpj_A455 Beta-secretase 1; alzheimer'S, aspartyl protease, 2e-11
3c9x_A329 Trichoderma reesei aspartic protease; aspartic pro 1e-10
3qvc_A451 Histo-aspartic protease; HAP, plasmepsin, zymogen, 1e-10
3k1w_A341 Renin; protease, alternative splicing, aspartyl pr 2e-10
2apr_A325 Rhizopuspepsin; hydrolase (aspartic proteinase); 1 2e-10
2qp8_A395 Beta-secretase 1; BACE1, protease, alternative spl 2e-10
2x0b_A383 Renin; hydrolase-hormone complex, hydrolase hormon 2e-10
1mpp_A361 Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomu 9e-10
2bju_A453 Plasmepsin II; aspartic proteinase, drug design, m 1e-09
1oew_A329 Endothiapepsin; hydrolase, aspartic proteinase mec 2e-09
1miq_A375 Plasmepsin; aspartic proteinase zymogen, domain op 3e-09
2ewy_A383 Beta-secretase 2; BACE2, aspartic protease, hydrol 7e-09
1bxo_A323 Protein (penicillopepsin); hydrolase, phosphonate 8e-09
1lya_A97 Cathepsin D; lysosomal aspartic protease; HET: NAG 9e-09
1wkr_A340 Polyporopepsin; hydrolase, hydrolase-hydrolase inh 2e-08
1ibq_A325 Aspergillopepsin; aspartic proteinase, hydrolase; 2e-08
1izd_A323 Aspartic proteinase; sugar binding, acid protease, 2e-06
1yg9_A330 Aspartic protease BLA G 2; allegren, hydrolase, al 1e-05
>3aup_A SBG7S, BG, basic 7S globulin; pepsin-like fold, plant protein; 1.91A {Glycine max} Length = 403 Back     alignment and structure
 Score =  219 bits (558), Expect = 3e-68
 Identities = 65/373 (17%), Positives = 120/373 (32%), Gaps = 34/373 (9%)

Query: 7   YTVDVLFGTPSKSEFLLFDTGSYLIWTQCLPCVNCFNQSAPIFNPNASSTYKRIPCDDLI 66
           +  ++   TP     +L D     +W  C    +     AP  +    S      C    
Sbjct: 23  HWANLQKRTPLMQVPVLVDLNGNHLWVNCEQQYSSKTYQAPFCHSTQCSRANTHQCLSCP 82

Query: 67  CRRPPFRCENGQCVHRINYAGGASASGLVSTETFTFH-------LKNKLVCVPGVIFGCS 119
               P   +N   +   N     +  G +  +    H           LV VP  +F C+
Sbjct: 83  AASRPGCHKNTCGLMSTNPITQQTGLGELGEDVLAIHATQGSTQQLGPLVTVPQFLFSCA 142

Query: 120 NDNR-DFSFDGNIAGILGFSVSPFSLLGQLKST--AQGLFSYCLVYAYREMEATSILRFG 176
                      N  G+ G   +P SL  QL S    Q  F+ CL    R   +   + FG
Sbjct: 143 PSFLVQKGLPRNTQGVAGLGHAPISLPNQLASHFGLQRQFTTCLS---RYPTSKGAIIFG 199

Query: 177 KDAN--------IQRKDMKTIRMFVDRSSHYYLSLQDISVADHRIGFAP-GTFALRRNGT 227
              N            D+    + +     Y + +  I +  H +      +  +  + +
Sbjct: 200 DAPNNMRQFQNQDIFHDLAFTPLTITLQGEYNVRVNSIRINQHSVFPLNKISSTIVGSTS 259

Query: 228 GGCMIDTGAIATFIQRGPYEVVMRHFDEHFTSFGRQRMHNASEDWEYCYRYDSRFRAYAS 287
           GG MI T      +Q+  Y+   + F +      +Q    +   +  C+   ++  AY S
Sbjct: 260 GGTMISTSTPHMVLQQSVYQAFTQVFAQQ---LPKQAQVKSVAPFGLCFNS-NKINAYPS 315

Query: 288 MTFHFDR---ADFKVEPTYMYFIFQNEGYFCVAISFSDRN----SVVGAWQQQDTRFVYD 340
           +    D+     +++       +    G  C+ +            +GA Q ++   V+D
Sbjct: 316 VDLVMDKPNGPVWRI-SGEDLMVQAQPGVTCLGVMNGGMQPRAEITLGARQLEENLVVFD 374

Query: 341 LNTGTIQFVPENC 353
           L    + F   + 
Sbjct: 375 LARSRVGFSTSSL 387
>3vla_A EDGP; extracellular, inhibitor, plant protein; HET: NAG; 0.95A {Daucus carota} PDB: 3vlb_A Length = 413 Back     alignment and structure
>1t6e_X Xylanase inhibitor; two beta-barrel domain structure, hydrolase inhibitor; 1.70A {Triticum aestivum} SCOP: b.50.1.2 PDB: 1t6g_A 2b42_A 3hd8_A Length = 381 Back     alignment and structure
>3psg_A Pepsinogen; hydrolase(acid proteinase zymogen); 1.65A {Sus scrofa} SCOP: b.50.1.2 PDB: 2psg_A 4pep_A* 3pep_A* 1f34_A* 1psa_A* 1yx9_A 5pep_A 1flh_A 1qrp_E* 1psn_A* 1pso_E* 3utl_A Length = 370 Back     alignment and structure
>1dpj_A Proteinase A; proteinase A, hydrolase-hydrolase inhibitor COM; HET: BMA MAN NAG; 1.80A {Saccharomyces cerevisiae} SCOP: b.50.1.2 PDB: 1dp5_A* 1fmu_A* 1fmx_A* 1fq5_A* 1fq4_A* 1fq6_A* 1fq7_A* 1fq8_A* 2jxr_A* 1g0v_A* Length = 329 Back     alignment and structure
>3pvk_A Candidapepsin-2; hydrolase; 1.27A {Candida albicans} PDB: 1eag_A 3q70_A* 1zap_A* 2qzw_A 2h6t_A* 2h6s_A* Length = 342 Back     alignment and structure
>1b5f_A Protein (cardosin A); hydrolase, aspartic proteinase; HET: NAG FUC BMA MAN; 1.72A {Cynara cardunculus} SCOP: b.50.1.2 Length = 239 Back     alignment and structure
>1htr_B Gastricsin; aspartyl protease; 1.62A {Homo sapiens} SCOP: b.50.1.2 PDB: 1avf_A Length = 329 Back     alignment and structure
>2qzx_A Candidapepsin-5; aspartic proteinase, aspartyl protease, CL PAIR of basic residues, glycoprotein, protease, secreted; HET: STA; 2.50A {Candida albicans} Length = 342 Back     alignment and structure
>1am5_A Pepsin, acid proteinase; aspartyl protease, hydrolase; 2.16A {Gadus morhua} SCOP: b.50.1.2 Length = 324 Back     alignment and structure
>1j71_A Candidapepsin, aspartic proteinase; candida tropicalis aspartic protease, SAPT1, hydrolase; 1.80A {Candida tropicalis} SCOP: b.50.1.2 Length = 334 Back     alignment and structure
>3fv3_A SAPP1P-secreted aspartic protease 1; secreted aspartic protease, virulence factor, H; HET: STA; 1.85A {Candida parapsilosis} PDB: 3tne_A* Length = 339 Back     alignment and structure
>1tzs_A Cathepsin E; hydrolase, aspartic protease, activation intermediate; 2.35A {Homo sapiens} Length = 351 Back     alignment and structure
>1qdm_A Prophytepsin; aspartic proteinases, saposin-like domain, zymogen structure, hydrolase; 2.30A {Hordeum vulgare} SCOP: a.64.1.2 b.50.1.2 Length = 478 Back     alignment and structure
>3cms_A Chymosin B; hydrolase, acid proteinase; 2.00A {Bos taurus} SCOP: b.50.1.2 PDB: 4cms_A 1czi_E* 1cms_A Length = 323 Back     alignment and structure
>3lpj_A Beta-secretase 1; alzheimer'S, aspartyl protease, hydrolase; HET: TLA Z75; 1.79A {Homo sapiens} PDB: 3lpi_A* 3lpk_A* 3ohf_A* 3ohh_A* 3r2f_A* 3skf_A* 3skg_A* 2hiz_A* 2p83_A* 2va7_A* 2va5_A* 2va6_A* Length = 455 Back     alignment and structure
>3c9x_A Trichoderma reesei aspartic protease; aspartic proteinase, aspartyl protease, hydrolase; 1.70A {Trichoderma reesei} PDB: 3c9y_A* 3emy_A* Length = 329 Back     alignment and structure
>3qvc_A Histo-aspartic protease; HAP, plasmepsin, zymogen, hydrolase; 2.10A {Plasmodium falciparum} PDB: 3qvi_A* 3fns_A 3fnt_A* 3fnu_A* Length = 451 Back     alignment and structure
>3k1w_A Renin; protease, alternative splicing, aspartyl protease, cleavage on PAIR of basic residues, disease mutation, disulfide bond, glycoprotein; HET: BFX NDG HSQ; 1.50A {Homo sapiens} PDB: 3d91_A* 3g70_A* 3g6z_A* 3own_A* 2iko_A* 1bbs_A* 1rne_A* 2bkt_A* 2bks_A* 2iku_A* 2il2_A* 2ren_A* 2v0z_C* 2v10_C* 2v11_C* 2v12_C* 2v13_A* 2v16_C* 3g72_A* 3oot_A* ... Length = 341 Back     alignment and structure
>2apr_A Rhizopuspepsin; hydrolase (aspartic proteinase); 1.80A {Rhizopus microsporus var} SCOP: b.50.1.2 PDB: 3apr_E* 4apr_E* 5apr_E* 6apr_E* 1uh9_A 1uh8_A 1uh7_A Length = 325 Back     alignment and structure
>2qp8_A Beta-secretase 1; BACE1, protease, alternative splicing, aspartyl protease, glycoprotein, hydrolase, membrane, transmembrane, zymogen; HET: TAR SC7; 1.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 2qk5_A* 2qmf_A* 2qmg_A* 2qmd_A* 4djx_A* 3l59_A* 3l5b_A* 3l5c_A* 3l58_A* 3l5d_A* 3l5f_A* 4dju_A* 4djv_A* 4djw_A* 3l5e_A* 4djy_A* 2zhv_A 2zhs_A 2zhr_A 2zhu_A ... Length = 395 Back     alignment and structure
>2x0b_A Renin; hydrolase-hormone complex, hydrolase hormone complex, vasoconstrictor, glycoprotein, hypertension, serpins; 4.33A {Homo sapiens} Length = 383 Back     alignment and structure
>1mpp_A Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomucor pusillus} SCOP: b.50.1.2 PDB: 2asi_A* 2rmp_A* Length = 361 Back     alignment and structure
>2bju_A Plasmepsin II; aspartic proteinase, drug design, malaria, aspartyl protease, glycoprotein, hydrolase, signal, zymogen; HET: IH4; 1.56A {Plasmodium falciparum} SCOP: b.50.1.2 PDB: 1pfz_A 1xdh_A* 1lf3_A 1w6h_A* 1w6i_A* 1lf4_A* 1lf2_A* 1lee_A* 1m43_A* 2igx_A* 1sme_A* 1me6_A* 1xe6_A* 1xe5_A* 2igy_A* 2r9b_A 3f9q_A 3qrv_A 3qs1_A* 2anl_A* ... Length = 453 Back     alignment and structure
>1oew_A Endothiapepsin; hydrolase, aspartic proteinase mechanism, atomic resolution, succinimide, anisotropic refinement; HET: SUI; 0.9A {Cryphonectria parasitica} SCOP: b.50.1.2 PDB: 1gkt_A* 1gvt_A* 1gvv_A* 1gvw_A* 1gvx_A* 1gvu_A* 1oex_A* 2jji_A* 2jjj_A* 2vs2_A* 3uri_A* 3urj_A* 3url_A* 3pww_A* 1e80_E* 1e81_E* 1e82_E* 1e5o_E* 1eed_P* 1epl_E* ... Length = 329 Back     alignment and structure
>1miq_A Plasmepsin; aspartic proteinase zymogen, domain opening, hydrolase; 2.50A {Plasmodium vivax} SCOP: b.50.1.2 PDB: 1ls5_A* Length = 375 Back     alignment and structure
>2ewy_A Beta-secretase 2; BACE2, aspartic protease, hydrolase; HET: DBO; 3.10A {Homo sapiens} Length = 383 Back     alignment and structure
>1bxo_A Protein (penicillopepsin); hydrolase, phosphonate inhibitors, macrocycle; HET: MAN PP7; 0.95A {Penicillium janthinellum} SCOP: b.50.1.2 PDB: 1apu_E* 1apv_E* 1apw_E* 1apt_E* 1bxq_A* 1ppk_E* 1ppl_E* 1ppm_E* 2wea_A* 2web_A* 2wec_A* 2wed_A* 3app_A Length = 323 Back     alignment and structure
>1lya_A Cathepsin D; lysosomal aspartic protease; HET: NAG BMA MAN; 2.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 1lyb_A* 1lyw_A* Length = 97 Back     alignment and structure
>1wkr_A Polyporopepsin; hydrolase, hydrolase-hydrolase inhibitor complex; HET: STA; 1.30A {Irpex lacteus} SCOP: b.50.1.2 Length = 340 Back     alignment and structure
>1ibq_A Aspergillopepsin; aspartic proteinase, hydrolase; HET: MAN; 2.14A {Aspergillus phoenicis} SCOP: b.50.1.2 Length = 325 Back     alignment and structure
>1izd_A Aspartic proteinase; sugar binding, acid protease, hydrolase; HET: MAN; 1.90A {Aspergillus oryzae} SCOP: b.50.1.2 PDB: 1ize_A* Length = 323 Back     alignment and structure
>1yg9_A Aspartic protease BLA G 2; allegren, hydrolase, allergen; HET: NAG; 1.30A {Blattella germanica} PDB: 2nr6_A* 3liz_A* Length = 330 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query359
3vla_A413 EDGP; extracellular, inhibitor, plant protein; HET 100.0
3psg_A370 Pepsinogen; hydrolase(acid proteinase zymogen); 1. 100.0
1tzs_A351 Cathepsin E; hydrolase, aspartic protease, activat 100.0
1mpp_A361 Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomu 100.0
3c9x_A329 Trichoderma reesei aspartic protease; aspartic pro 100.0
1j71_A334 Candidapepsin, aspartic proteinase; candida tropic 100.0
1oew_A329 Endothiapepsin; hydrolase, aspartic proteinase mec 100.0
2x0b_A383 Renin; hydrolase-hormone complex, hydrolase hormon 100.0
2qzx_A342 Candidapepsin-5; aspartic proteinase, aspartyl pro 100.0
1am5_A324 Pepsin, acid proteinase; aspartyl protease, hydrol 100.0
2apr_A325 Rhizopuspepsin; hydrolase (aspartic proteinase); 1 100.0
3cms_A323 Chymosin B; hydrolase, acid proteinase; 2.00A {Bos 100.0
3aup_A403 SBG7S, BG, basic 7S globulin; pepsin-like fold, pl 100.0
4aa9_A320 Chymosin; hydrolase, aspartic peptidase, rennet; H 100.0
1dpj_A329 Proteinase A; proteinase A, hydrolase-hydrolase in 100.0
1htr_B329 Gastricsin; aspartyl protease; 1.62A {Homo sapiens 100.0
3pvk_A342 Candidapepsin-2; hydrolase; 1.27A {Candida albican 100.0
3fv3_A339 SAPP1P-secreted aspartic protease 1; secreted aspa 100.0
1miq_A375 Plasmepsin; aspartic proteinase zymogen, domain op 100.0
3k1w_A341 Renin; protease, alternative splicing, aspartyl pr 100.0
1ibq_A325 Aspergillopepsin; aspartic proteinase, hydrolase; 100.0
1izd_A323 Aspartic proteinase; sugar binding, acid protease, 100.0
1bxo_A323 Protein (penicillopepsin); hydrolase, phosphonate 100.0
2bju_A453 Plasmepsin II; aspartic proteinase, drug design, m 100.0
1yg9_A330 Aspartic protease BLA G 2; allegren, hydrolase, al 100.0
2ewy_A383 Beta-secretase 2; BACE2, aspartic protease, hydrol 100.0
3qvc_A451 Histo-aspartic protease; HAP, plasmepsin, zymogen, 100.0
1qdm_A478 Prophytepsin; aspartic proteinases, saposin-like d 100.0
2qp8_A395 Beta-secretase 1; BACE1, protease, alternative spl 100.0
3vf3_A402 Beta-secretase 1; structure-based drug design, hyd 100.0
1wkr_A340 Polyporopepsin; hydrolase, hydrolase-hydrolase inh 100.0
3lpj_A455 Beta-secretase 1; alzheimer'S, aspartyl protease, 100.0
1t6e_X381 Xylanase inhibitor; two beta-barrel domain structu 100.0
1b5f_A239 Protein (cardosin A); hydrolase, aspartic proteina 100.0
1lya_B241 Cathepsin D; lysosomal aspartic protease; HET: NAG 100.0
1lya_A97 Cathepsin D; lysosomal aspartic protease; HET: NAG 99.87
1b5f_B87 Protein (cardosin A); hydrolase, aspartic proteina 99.72
3s8i_A148 Protein DDI1 homolog 1; protease, structural genom 96.38
2i1a_A148 DNA damage-inducible protein DDI1; acid protease f 95.17
2hs1_A99 HIV-1 protease; ultra-high resolution active site 86.55
2i1a_A148 DNA damage-inducible protein DDI1; acid protease f 85.87
1fmb_A104 EIAV protease; hydrolase (acid proteinase), RNA-di 85.36
3ec0_A99 Protease; HIV-2, inhibitor, hydrolase; HET: GRL; 1 84.24
3liy_A116 Protease; hydrolase, hydrolase-hydrolase inhibitor 81.91
>3vla_A EDGP; extracellular, inhibitor, plant protein; HET: NAG; 0.95A {Daucus carota} PDB: 3vlb_A Back     alignment and structure
Probab=100.00  E-value=2.9e-59  Score=441.94  Aligned_cols=339  Identities=20%  Similarity=0.383  Sum_probs=280.0

Q ss_pred             CCcceEEEEEEeCCCCcEEEEEEEcCCCceeEeCCCCCCCCCCCCCCCCCCCCCCceeecCCCCCCCCC-----------
Q 045061            2 EKNYFYTVDVLFGTPSKSEFLLFDTGSYLIWTQCLPCVNCFNQSAPIFNPNASSTYKRIPCDDLICRRP-----------   70 (359)
Q Consensus         2 ~~~~~y~~~i~iGtp~Q~~~l~~DTgS~~~wv~~~~c~~c~~~~~~~y~~~~Sst~~~~~~~~~~c~~~-----------   70 (359)
                      .++++|+++|.||||||++.|+|||||+++||+|..|             .+|+||+.+.|.+..|...           
T Consensus        17 ~~~~~Y~~~i~iGTPpq~~~v~~DTGS~~lWv~c~~c-------------~~Sst~~~v~C~s~~C~~~~~~~~~~c~s~   83 (413)
T 3vla_A           17 ASTLQYVTTINQRTPLVSENLVVDLGGRFLWVDCDQN-------------YVSSTYRPVRCRTSQCSLSGSIACGDCFNG   83 (413)
T ss_dssp             TTTCCEEEEEEETTTTEEEEEEEETTCSSEEEECSSS-------------CCCTTCEECBTTSHHHHHTTCCEEECCSSC
T ss_pred             CCCCeEEEEEEcCCCCcceEEEEeCCChhhhcccCCC-------------CCCCCcCccCCCcccccccccCCCcccccC
Confidence            4688999999999999999999999999999998765             3799999999999888762           


Q ss_pred             -CCCCCCCCceEEEEe-CCCCeEEEEEEEEEEEEecCCc-----eeecCceEEEceeCCCCCCCCCCcceEEecCCCCCc
Q 045061           71 -PFRCENGQCVHRINY-AGGASASGLVSTETFTFHLKNK-----LVCVPGVIFGCSNDNRDFSFDGNIAGILGFSVSPFS  143 (359)
Q Consensus        71 -~~~c~~~~~~~~~~y-~~g~~~~G~~~~D~v~i~~~~~-----~~~~~~~~fg~~~~~~~~~~~~~~~GilGLg~~~~s  143 (359)
                       ...|.++.|.|.+.| .+++.+.|.+++|+|+|+..++     .+.++++.|||++.+.........+||||||++..|
T Consensus        84 ~~~~c~~~~c~~~i~Y~~d~~~~~G~l~~Dtv~l~~~~g~~~~~~~~v~~~~FGc~~~~~~~g~~~~~dGIlGLg~~~lS  163 (413)
T 3vla_A           84 PRPGCNNNTCGVFPENPVINTATGGEVAEDVVSVESTDGSSSGRVVTVPRFIFSCAPTSLLQNLASGVVGMAGLGRTRIA  163 (413)
T ss_dssp             CBTTBCSSEEEECCEETTTTEECCEEEEEEEEEEEEECSSBEEEEEEEEEEEEEEECGGGGTTSCTTCCEEEECSSSSSS
T ss_pred             CCCCCCCCcCcceeecCcCCceeeeEEEEEEEEecccCCCCcccceeeCCEEEECcccccccCcccccccccccCCCCcc
Confidence             135667789999999 5887799999999999984321     368889999999986320224578999999999999


Q ss_pred             hHHhhhhc--CCCceEEeccccCCCCCcceeEEECCCCcc------CCCC-ceeeeeecCC------------CCcEEEE
Q 045061          144 LLGQLKST--AQGLFSYCLVYAYREMEATSILRFGKDANI------QRKD-MKTIRMFVDR------------SSHYYLS  202 (359)
Q Consensus       144 ~~~ql~~~--~~~~fs~~l~~~~~~~~~~g~l~~Gg~d~~------~~~~-i~~~~~~~~~------------~~~w~v~  202 (359)
                      ++.||.+.  .+++||+||.+..   ...|.|+||+.|..      +.++ +.|+|++..+            ..+|.|.
T Consensus       164 l~sql~~~~~i~~~FS~cL~~~~---~~~G~l~fGg~~~~~~p~~~~~g~~l~~tPl~~~~~~~~~~~~~~~~~~~y~V~  240 (413)
T 3vla_A          164 LPSQFASAFSFKRKFAMCLSGST---SSNSVIIFGNDPYTFLPNIIVSDKTLTYTPLLTNPVSTSATSTQGEPSVEYFIG  240 (413)
T ss_dssp             HHHHHHHHHTCCSEEEEECCSCS---SSCEEEEEESCCEEETTTEEECTTTSEEEECBCCSSCCSSSCCTTCCCCSCEEC
T ss_pred             hHHHHhhhcCCCceEEEeCCCCC---CCceEEEECCCcccccccccccCCceeEeecccCCccccccccccCCCceEEEE
Confidence            99998764  3699999999843   56799999999853      4667 9999999853            1699999


Q ss_pred             EeEEEECCEEeecCCCccccccCCCCcEEEecCCcccccCchHHHHHHHHHHHHhhccCccccCCCccccccceecccCc
Q 045061          203 LQDISVADHRIGFAPGTFALRRNGTGGCMIDTGAIATFIQRGPYEVVMRHFDEHFTSFGRQRMHNASEDWEYCYRYDSRF  282 (359)
Q Consensus       203 l~~i~v~~~~~~~~~~~~~~~~~~~~~~iiDtGt~~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~  282 (359)
                      +++|+|+++.+.++++.+.++..+.+.+||||||++++||+++|++|++++.+......+.... ....+..|+..+...
T Consensus       241 l~~IsVgg~~l~~~~~~~~~~~~g~~~aIiDSGTslt~lp~~~y~~l~~a~~~~~~~~~~~~~~-~~~~~~~C~~~~~~~  319 (413)
T 3vla_A          241 VKSIKINSKIVALNTSLLSISSAGLGGTKISTINPYTVLETSIYKAVTEAFIKESAARNITRVA-SVAPFGACFSTDNIL  319 (413)
T ss_dssp             CCEEEETTEEECCCGGGTSBCTTSCBCEEECSSSSSEEEEHHHHHHHHHHHHHHHHHTTCCEEC-CCTTCSCEEECTTCC
T ss_pred             EEEEEECCEEccCCchhcccccCCCCCEEEECCCCcEEcCHHHHHHHHHHHHHHhcccCCCcCC-CCCCCcceeccCCcc
Confidence            9999999999988877777666666789999999999999999999999999886421111221 233568999875331


Q ss_pred             -----cccceEEEEEcC--cEEEEcCCceEEEEcCCCeEEEEEEcCC----CceeecccceeeeEEEEECCCCEEEEee-
Q 045061          283 -----RAYASMTFHFDR--ADFKVEPTYMYFIFQNEGYFCVAISFSD----RNSVVGAWQQQDTRFVYDLNTGTIQFVP-  350 (359)
Q Consensus       283 -----~~~p~l~~~f~g--~~~~i~~~~y~~~~~~~~~~C~~~~~~~----~~~iLG~~fl~~~y~vfD~~~~~igfa~-  350 (359)
                           ..+|+|+|+|+|  +.++|++++|+++.. ++..|++++..+    +.||||+.|||++|+|||++++|||||+ 
T Consensus       320 ~~~~~~~lP~i~f~f~g~~~~~~l~~~~y~~~~~-~~~~Cl~~~~~~~~~~~~~IlGd~fl~~~~vvfD~~~~riGfa~~  398 (413)
T 3vla_A          320 STRLGPSVPSIDLVLQSESVVWTITGSNSMVYIN-DNVVCLGVVDGGSNLRTSIVIGGHQLEDNLVQFDLATSRVGFSGT  398 (413)
T ss_dssp             EETTEECCCCEEEECSSTTCEEEECHHHHEEEEE-TTEEEECEEEEESSCSSSEEECHHHHTTEEEEEETTTTEEEEEEE
T ss_pred             ccccccCCCcEEEEEcCCcEEEEeCccceEEEeC-CCcEEEEEEecCCCcccceeEehhhhcCeEEEEECCCCEEEEEEe
Confidence                 479999999998  899999999999865 568999887543    4799999999999999999999999998 


Q ss_pred             -----CCCCCccC
Q 045061          351 -----ENCANDHF  358 (359)
Q Consensus       351 -----~~c~~~~~  358 (359)
                           +.|.+..|
T Consensus       399 ~~~~~~~c~~~~~  411 (413)
T 3vla_A          399 LLGSRTTCANFNF  411 (413)
T ss_dssp             GGGGTCCGGGSBC
T ss_pred             cccCcccccCcCC
Confidence                 56877665
>3psg_A Pepsinogen; hydrolase(acid proteinase zymogen); 1.65A {Sus scrofa} SCOP: b.50.1.2 PDB: 2psg_A 4pep_A* 3pep_A* 1f34_A* 1psa_A* 1yx9_A 5pep_A 1flh_A 1qrp_E* 1psn_A* 1pso_E* 3utl_A Back     alignment and structure
>1tzs_A Cathepsin E; hydrolase, aspartic protease, activation intermediate; 2.35A {Homo sapiens} Back     alignment and structure
>1mpp_A Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomucor pusillus} SCOP: b.50.1.2 PDB: 2asi_A* 2rmp_A* Back     alignment and structure
>3c9x_A Trichoderma reesei aspartic protease; aspartic proteinase, aspartyl protease, hydrolase; 1.70A {Trichoderma reesei} PDB: 3c9y_A* 3emy_A* Back     alignment and structure
>1j71_A Candidapepsin, aspartic proteinase; candida tropicalis aspartic protease, SAPT1, hydrolase; 1.80A {Candida tropicalis} SCOP: b.50.1.2 Back     alignment and structure
>1oew_A Endothiapepsin; hydrolase, aspartic proteinase mechanism, atomic resolution, succinimide, anisotropic refinement; HET: SUI; 0.9A {Cryphonectria parasitica} SCOP: b.50.1.2 PDB: 1gkt_A* 1gvt_A* 1gvv_A* 1gvw_A* 1gvx_A* 1gvu_A* 1oex_A* 2jji_A* 2jjj_A* 2vs2_A* 3uri_A* 3urj_A* 3url_A* 3pww_A* 1e80_E* 1e81_E* 1e82_E* 1e5o_E* 1eed_P* 1epl_E* ... Back     alignment and structure
>2x0b_A Renin; hydrolase-hormone complex, hydrolase hormone complex, vasoconstrictor, glycoprotein, hypertension, serpins; 4.33A {Homo sapiens} Back     alignment and structure
>2qzx_A Candidapepsin-5; aspartic proteinase, aspartyl protease, CL PAIR of basic residues, glycoprotein, protease, secreted; HET: STA; 2.50A {Candida albicans} Back     alignment and structure
>1am5_A Pepsin, acid proteinase; aspartyl protease, hydrolase; 2.16A {Gadus morhua} SCOP: b.50.1.2 Back     alignment and structure
>2apr_A Rhizopuspepsin; hydrolase (aspartic proteinase); 1.80A {Rhizopus microsporus var} SCOP: b.50.1.2 PDB: 3apr_E* 4apr_E* 5apr_E* 6apr_E* 1uh9_A 1uh8_A 1uh7_A Back     alignment and structure
>3cms_A Chymosin B; hydrolase, acid proteinase; 2.00A {Bos taurus} SCOP: b.50.1.2 PDB: 4cms_A 1czi_E* 1cms_A Back     alignment and structure
>3aup_A SBG7S, BG, basic 7S globulin; pepsin-like fold, plant protein; 1.91A {Glycine max} Back     alignment and structure
>4aa9_A Chymosin; hydrolase, aspartic peptidase, rennet; HET: NAG; 1.60A {Camelus dromedarius} PDB: 4aa8_A 1czi_E* 1cms_A 4cms_A 3cms_A Back     alignment and structure
>1dpj_A Proteinase A; proteinase A, hydrolase-hydrolase inhibitor COM; HET: BMA MAN NAG; 1.80A {Saccharomyces cerevisiae} SCOP: b.50.1.2 PDB: 1dp5_A* 1fmu_A* 1fmx_A* 1fq5_A* 1fq4_A* 1fq6_A* 1fq7_A* 1fq8_A* 2jxr_A* 1g0v_A* Back     alignment and structure
>1htr_B Gastricsin; aspartyl protease; 1.62A {Homo sapiens} SCOP: b.50.1.2 PDB: 1avf_A Back     alignment and structure
>3pvk_A Candidapepsin-2; hydrolase; 1.27A {Candida albicans} SCOP: b.50.1.2 PDB: 1eag_A 3q70_A* 1zap_A* 2qzw_A 2h6t_A* 2h6s_A* Back     alignment and structure
>3fv3_A SAPP1P-secreted aspartic protease 1; secreted aspartic protease, virulence factor, H; HET: STA; 1.85A {Candida parapsilosis} SCOP: b.50.1.0 PDB: 3tne_A* Back     alignment and structure
>1miq_A Plasmepsin; aspartic proteinase zymogen, domain opening, hydrolase; 2.50A {Plasmodium vivax} SCOP: b.50.1.2 PDB: 1ls5_A* Back     alignment and structure
>3k1w_A Renin; protease, alternative splicing, aspartyl protease, cleavage on PAIR of basic residues, disease mutation, disulfide bond, glycoprotein; HET: BFX NDG HSQ; 1.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 3d91_A* 3g70_A* 3g6z_A* 3own_A* 2iko_A* 1bbs_A* 1rne_A* 2bkt_A* 2bks_A* 2iku_A* 2il2_A* 2ren_A* 2v0z_C* 2v10_C* 2v11_C* 2v12_C* 2v13_A* 2v16_C* 3g72_A* 3oot_A* ... Back     alignment and structure
>1ibq_A Aspergillopepsin; aspartic proteinase, hydrolase; HET: MAN; 2.14A {Aspergillus phoenicis} SCOP: b.50.1.2 Back     alignment and structure
>1izd_A Aspartic proteinase; sugar binding, acid protease, hydrolase; HET: MAN; 1.90A {Aspergillus oryzae} SCOP: b.50.1.2 PDB: 1ize_A* Back     alignment and structure
>1bxo_A Protein (penicillopepsin); hydrolase, phosphonate inhibitors, macrocycle; HET: MAN PP7; 0.95A {Penicillium janthinellum} SCOP: b.50.1.2 PDB: 1apu_E* 1apv_E* 1apw_E* 1apt_E* 1bxq_A* 1ppk_E* 1ppl_E* 1ppm_E* 2wea_A* 2web_A* 2wec_A* 2wed_A* 3app_A Back     alignment and structure
>2bju_A Plasmepsin II; aspartic proteinase, drug design, malaria, aspartyl protease, glycoprotein, hydrolase, signal, zymogen; HET: IH4; 1.56A {Plasmodium falciparum} SCOP: b.50.1.2 PDB: 1pfz_A 1xdh_A* 1lf3_A 1w6h_A* 1w6i_A* 1lf4_A* 1lf2_A* 1lee_A* 1m43_A* 2igx_A* 1sme_A* 1me6_A* 1xe6_A* 1xe5_A* 2igy_A* 2r9b_A 3f9q_A 3qrv_A 3qs1_A* 2anl_A* ... Back     alignment and structure
>1yg9_A Aspartic protease BLA G 2; allegren, hydrolase, allergen; HET: NAG; 1.30A {Blattella germanica} PDB: 2nr6_A* 3liz_A* Back     alignment and structure
>2ewy_A Beta-secretase 2; BACE2, aspartic protease, hydrolase; HET: DBO; 3.10A {Homo sapiens} Back     alignment and structure
>3qvc_A Histo-aspartic protease; HAP, plasmepsin, zymogen, hydrolase; 2.10A {Plasmodium falciparum} PDB: 3qvi_A* 3fns_A 3fnt_A* 3fnu_A* Back     alignment and structure
>1qdm_A Prophytepsin; aspartic proteinases, saposin-like domain, zymogen structure, hydrolase; 2.30A {Hordeum vulgare} SCOP: a.64.1.2 b.50.1.2 Back     alignment and structure
>2qp8_A Beta-secretase 1; BACE1, protease, alternative splicing, aspartyl protease, glycoprotein, hydrolase, membrane, transmembrane, zymogen; HET: TAR SC7; 1.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 2qk5_A* 2qmf_A* 2qmg_A* 2qmd_A* 4djx_A* 3l59_A* 3l5b_A* 3l5c_A* 3l58_A* 3l5d_A* 3l5f_A* 4dju_A* 4djv_A* 4djw_A* 3l5e_A* 4djy_A* 2zhv_A 2zhs_A 2zhr_A 2zhu_A ... Back     alignment and structure
>3vf3_A Beta-secretase 1; structure-based drug design, hydrolase-hydrolase inhibitor C; HET: 0GS; 1.48A {Homo sapiens} PDB: 2f3e_A* 2f3f_A* 1ym2_A* 3dv1_A* 3dv5_A* 3k5c_A* 3k5f_A* 3k5g_A* 3pi5_A* 3qbh_A* 3duy_A* 3veu_A* 3vg1_A* 4d83_A* 4d88_A* 4d89_A* 4d8c_A* 3msk_A* 3k5d_A* 1ym4_A* ... Back     alignment and structure
>1wkr_A Polyporopepsin; hydrolase, hydrolase-hydrolase inhibitor complex; HET: STA; 1.30A {Irpex lacteus} SCOP: b.50.1.2 Back     alignment and structure
>3lpj_A Beta-secretase 1; alzheimer'S, aspartyl protease, hydrolase; HET: TLA Z75; 1.79A {Homo sapiens} PDB: 3lpi_A* 3lpk_A* 3ohf_A* 3ohh_A* 3r2f_A* 3skf_A* 3skg_A* 4fse_A* 2hiz_A* 2p83_A* 2va7_A* 2va5_A* 2va6_A* Back     alignment and structure
>1t6e_X Xylanase inhibitor; two beta-barrel domain structure, hydrolase inhibitor; 1.70A {Triticum aestivum} SCOP: b.50.1.2 PDB: 1t6g_A 2b42_A 3hd8_A Back     alignment and structure
>1b5f_A Protein (cardosin A); hydrolase, aspartic proteinase; HET: NAG FUC BMA MAN; 1.72A {Cynara cardunculus} SCOP: b.50.1.2 Back     alignment and structure
>1lya_B Cathepsin D; lysosomal aspartic protease; HET: NAG BMA MAN; 2.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 1lyb_B* 1lyw_B* Back     alignment and structure
>1lya_A Cathepsin D; lysosomal aspartic protease; HET: NAG BMA MAN; 2.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 1lyb_A* 1lyw_A* Back     alignment and structure
>1b5f_B Protein (cardosin A); hydrolase, aspartic proteinase; HET: NAG FUC BMA MAN; 1.72A {Cynara cardunculus} SCOP: b.50.1.2 Back     alignment and structure
>3s8i_A Protein DDI1 homolog 1; protease, structural genomics, structural genomics consortiu retropepsin-like domain, protein turnover, hydrolase; 1.70A {Homo sapiens} Back     alignment and structure
>2i1a_A DNA damage-inducible protein DDI1; acid protease fold, dimer, retroviral protease domain, protein turnover; HET: DNA; 2.30A {Saccharomyces cerevisiae} Back     alignment and structure
>2hs1_A HIV-1 protease; ultra-high resolution active site surface binding site, HYDR; HET: 017; 0.84A {Human immunodeficiency virus 1} PDB: 3nu4_A* 3tl9_A* 3tkw_A* 3tkg_A* 3ndu_A* 3ndt_A* 3k4v_A* 3a2o_A* 1fgc_C* 2a1e_A* 2aod_A* 2aoi_A* 2aoj_A* 2hb3_A* 2ien_A* 1sdt_A* 2z4o_A* 2zye_A* 2nmw_A* 3b7v_A* ... Back     alignment and structure
>2i1a_A DNA damage-inducible protein DDI1; acid protease fold, dimer, retroviral protease domain, protein turnover; HET: DNA; 2.30A {Saccharomyces cerevisiae} Back     alignment and structure
>1fmb_A EIAV protease; hydrolase (acid proteinase), RNA-directed DNA polymerase, AS protease, endonuclease, polyprotein; HET: HYB; 1.80A {Equine infectious anemia virus} SCOP: b.50.1.1 PDB: 2fmb_A* Back     alignment and structure
>3ec0_A Protease; HIV-2, inhibitor, hydrolase; HET: GRL; 1.18A {Human immunodeficiency virus type 2} SCOP: b.50.1.1 PDB: 1hii_A* 1hsi_A 1hsh_A* 1idb_A* 1jld_A* 2mip_A 1ida_A* 3ebz_A* 3ecg_A* 3s45_A* 4upj_A* 1ivq_A* 1ivp_A 2hpf_A 3upj_A* 2hpe_A* 5upj_A* 6upj_A* 1sip_A 1tcw_A* ... Back     alignment and structure
>3liy_A Protease; hydrolase, hydrolase-hydrolase inhibitor complex; HET: STA; 1.86A {Human t-lymphotropic virus 1} PDB: 2b7f_A* 3liq_A* 3lit_A* 3liv_A* 3lix_A* 3lin_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 359
d1t6ex_381 b.50.1.2 (X:) Xylanase inhibitor TAXI-I {Wheat (Tr 2e-36
d1dpja_329 b.50.1.2 (A:) Acid protease {Baker's yeast (Saccha 3e-25
d2apra_325 b.50.1.2 (A:) Acid protease {Bread mold (Rhizopus 4e-25
g1htr.1372 b.50.1.2 (P:,B:) Pepsin(ogen) {Human (Homo sapiens 2e-23
d3cmsa_323 b.50.1.2 (A:) Chymosin (synonym: renin) {Cow (Bos 2e-23
g1lya.1338 b.50.1.2 (A:,B:) Cathepsin D {Human (Homo sapiens) 4e-23
g1b5f.1326 b.50.1.2 (A:,B:) Plant acid proteinase, phytepsin 6e-23
d1qdma2337 b.50.1.2 (A:2-247,A:248-338) Plant acid proteinase 8e-23
d1miqa_373 b.50.1.2 (A:) Plasmepsin (a hemoglobin-degrading e 1e-22
d2qp8a1387 b.50.1.2 (A:60-446) beta-secretase (memapsin) {Hum 1e-21
d1j71a_334 b.50.1.2 (A:) Acid protease {Yeast (Candida tropic 1e-21
d1am5a_324 b.50.1.2 (A:) Pepsin(ogen) {Atlantic cod (Gadus mo 3e-21
d1bxoa_323 b.50.1.2 (A:) Acid protease {Fungus (Penicillium j 3e-21
d2bjua1329 b.50.1.2 (A:1-329) Plasmepsin (a hemoglobin-degrad 3e-21
d1oewa_330 b.50.1.2 (A:) Endothiapepsin {Chestnut blight fung 5e-21
d3psga_370 b.50.1.2 (A:) Pepsin(ogen) {Pig (Sus scrofa) [TaxI 3e-20
d1eaga_342 b.50.1.2 (A:) Acid protease {Yeast (Candida albica 9e-20
d1mppa_357 b.50.1.2 (A:) Pepsin {Mucor pusillus [TaxId: 4840] 1e-19
d1hrna_337 b.50.1.2 (A:) Chymosin (synonym: renin) {Human (Ho 7e-18
d1izea_323 b.50.1.2 (A:) Acid protease {Fungus (Aspergillus o 4e-17
d1smra_335 b.50.1.2 (A:) Chymosin (synonym: renin) {Mouse (Mu 6e-16
d1wkra_340 b.50.1.2 (A:) Acid protease {Irpex lacteus (Polypo 6e-11
>d1t6ex_ b.50.1.2 (X:) Xylanase inhibitor TAXI-I {Wheat (Triticum aestivum) [TaxId: 4565]} Length = 381 Back     information, alignment and structure

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Xylanase inhibitor TAXI-I
species: Wheat (Triticum aestivum) [TaxId: 4565]

 Score =  134 bits (336), Expect = 2e-36
 Identities = 61/378 (16%), Positives = 107/378 (28%), Gaps = 42/378 (11%)

Query: 7   YTVDVLFGTPSKSEFLLFDTGSYLIWTQCLPCVNCFNQSAPIFNPNASSTYKRIPCDDLI 66
           YT+    G       L+ D    L+W+ C                  ++ Y    C    
Sbjct: 16  YTIPFHDGAS-----LVLDVAGPLVWSTCDGGQPPAEIPCSSPTCLLANAYPAPGCPAPS 70

Query: 67  CRRPPFRCENGQCVHRINYAGGASASGLVSTETFTFHLKNKLVCVPGVIFG----CSNDN 122
           C       +     +  N   GA A+G +S   F  +  +    V  V  G    C+   
Sbjct: 71  CGSDK--HDKPCTAYPYNPVSGACAAGSLSHTRFVANTTDGSKPVSKVNVGVLAACAPSK 128

Query: 123 RDFSFDGNIAGILGFSVSPFSLLGQLKSTAQGLFSYCLVYAYREMEATSILRFGKDANIQ 182
              S      G+ G + S  +L  Q+ S  +    + L                      
Sbjct: 129 LLASLPRGSTGVAGLANSGLALPAQVASAQKVANRFLLCLPTGGPGVAIFGGGPVPWPQF 188

Query: 183 RKDMKTIRMFVDRSSHYY-LSLQDISVADHRIGFAPGTFALRRNGTGGCMIDTGAIATFI 241
            + M    +     S  + +S + I V D R+    G        TGG M+ T      +
Sbjct: 189 TQSMPYTPLVTKGGSPAHYISARSIVVGDTRVPVPEGAL-----ATGGVMLSTRLPYVLL 243

Query: 242 QRGPYEVVMRHFDEHFTSFGRQRMH-----NASEDWEYCYRYDSRFRAYA-----SMTFH 291
           +   Y  +M  F +   +             A   +  CY   +           ++   
Sbjct: 244 RPDVYRPLMDAFTKALAAQHANGAPVARAVEAVAPFGVCYDTKTLGNNLGGYAVPNVQLG 303

Query: 292 FDR-ADFKVEPTYMYFIFQNEGYFCVAISFSDRN---------SVVGAWQQQDTRFVYDL 341
            D  +D+ +       +   +G  CVA                 ++G  Q +D    +D+
Sbjct: 304 LDGGSDWTMTGKN-SMVDVKQGTACVAFVEMKGVAAGDGRAPAVILGGAQMEDFVLDFDM 362

Query: 342 NTGTIQFV----PENCAN 355
               + F        C  
Sbjct: 363 EKKRLGFSRLPHFTGCGG 380
>d1dpja_ b.50.1.2 (A:) Acid protease {Baker's yeast (Saccharomyces cerevisiae), proteinase A [TaxId: 4932]} Length = 329 Back     information, alignment and structure
>d2apra_ b.50.1.2 (A:) Acid protease {Bread mold (Rhizopus chinensis) [TaxId: 4843]} Length = 325 Back     information, alignment and structure
>d3cmsa_ b.50.1.2 (A:) Chymosin (synonym: renin) {Cow (Bos taurus) [TaxId: 9913]} Length = 323 Back     information, alignment and structure
>d1qdma2 b.50.1.2 (A:2-247,A:248-338) Plant acid proteinase, phytepsin {Barley (Hordeum vulgare) [TaxId: 4513]} Length = 337 Back     information, alignment and structure
>d1miqa_ b.50.1.2 (A:) Plasmepsin (a hemoglobin-degrading enzyme) {Plasmodium vivax [TaxId: 5855]} Length = 373 Back     information, alignment and structure
>d2qp8a1 b.50.1.2 (A:60-446) beta-secretase (memapsin) {Human (Homo sapiens) [TaxId: 9606]} Length = 387 Back     information, alignment and structure
>d1j71a_ b.50.1.2 (A:) Acid protease {Yeast (Candida tropicalis) [TaxId: 5482]} Length = 334 Back     information, alignment and structure
>d1am5a_ b.50.1.2 (A:) Pepsin(ogen) {Atlantic cod (Gadus morhua) [TaxId: 8049]} Length = 324 Back     information, alignment and structure
>d1bxoa_ b.50.1.2 (A:) Acid protease {Fungus (Penicillium janthinellum), penicillopepsin [TaxId: 5079]} Length = 323 Back     information, alignment and structure
>d2bjua1 b.50.1.2 (A:1-329) Plasmepsin (a hemoglobin-degrading enzyme) {Plasmodium falciparum, plasmepsin II [TaxId: 5833]} Length = 329 Back     information, alignment and structure
>d3psga_ b.50.1.2 (A:) Pepsin(ogen) {Pig (Sus scrofa) [TaxId: 9823]} Length = 370 Back     information, alignment and structure
>d1eaga_ b.50.1.2 (A:) Acid protease {Yeast (Candida albicans) [TaxId: 5476]} Length = 342 Back     information, alignment and structure
>d1mppa_ b.50.1.2 (A:) Pepsin {Mucor pusillus [TaxId: 4840]} Length = 357 Back     information, alignment and structure
>d1hrna_ b.50.1.2 (A:) Chymosin (synonym: renin) {Human (Homo sapiens) [TaxId: 9606]} Length = 337 Back     information, alignment and structure
>d1izea_ b.50.1.2 (A:) Acid protease {Fungus (Aspergillus oryzae) [TaxId: 5062]} Length = 323 Back     information, alignment and structure
>d1smra_ b.50.1.2 (A:) Chymosin (synonym: renin) {Mouse (Mus musculus) [TaxId: 10090]} Length = 335 Back     information, alignment and structure
>d1wkra_ b.50.1.2 (A:) Acid protease {Irpex lacteus (Polyporus tulipiferae), Polyporopepsin [TaxId: 5319]} Length = 340 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query359
d3psga_370 Pepsin(ogen) {Pig (Sus scrofa) [TaxId: 9823]} 100.0
d2apra_325 Acid protease {Bread mold (Rhizopus chinensis) [Ta 100.0
g1htr.1372 Pepsin(ogen) {Human (Homo sapiens), progastricsin 100.0
d1dpja_329 Acid protease {Baker's yeast (Saccharomyces cerevi 100.0
d1oewa_330 Endothiapepsin {Chestnut blight fungus (Endothia p 100.0
d1j71a_334 Acid protease {Yeast (Candida tropicalis) [TaxId: 100.0
d1smra_335 Chymosin (synonym: renin) {Mouse (Mus musculus) [T 100.0
d1am5a_324 Pepsin(ogen) {Atlantic cod (Gadus morhua) [TaxId: 100.0
d1miqa_373 Plasmepsin (a hemoglobin-degrading enzyme) {Plasmo 100.0
d1mppa_357 Pepsin {Mucor pusillus [TaxId: 4840]} 100.0
d1eaga_342 Acid protease {Yeast (Candida albicans) [TaxId: 54 100.0
d1hrna_337 Chymosin (synonym: renin) {Human (Homo sapiens) [T 100.0
d2qp8a1387 beta-secretase (memapsin) {Human (Homo sapiens) [T 100.0
d1bxoa_323 Acid protease {Fungus (Penicillium janthinellum), 100.0
d2bjua1329 Plasmepsin (a hemoglobin-degrading enzyme) {Plasmo 100.0
d1izea_323 Acid protease {Fungus (Aspergillus oryzae) [TaxId: 100.0
d1wkra_340 Acid protease {Irpex lacteus (Polyporus tulipifera 100.0
g1lya.1338 Cathepsin D {Human (Homo sapiens) [TaxId: 9606]} 100.0
d3cmsa_323 Chymosin (synonym: renin) {Cow (Bos taurus) [TaxId 100.0
g1b5f.1326 Plant acid proteinase, phytepsin {Cynara carduncul 100.0
d1qdma2337 Plant acid proteinase, phytepsin {Barley (Hordeum 100.0
d1t6ex_381 Xylanase inhibitor TAXI-I {Wheat (Triticum aestivu 100.0
d2nmza199 Human immunodeficiency virus type 1 protease {Huma 81.57
d4fiva_113 Feline immunodeficiency virus (FIV) protease {Feli 81.08
d2fmba_104 EIAV protease {Equine infectious anemia virus [Tax 80.39
>d3psga_ b.50.1.2 (A:) Pepsin(ogen) {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Pepsin(ogen)
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=100.00  E-value=6e-55  Score=406.68  Aligned_cols=296  Identities=21%  Similarity=0.316  Sum_probs=250.5

Q ss_pred             cceEEEEEEeCCCCcEEEEEEEcCCCceeEeCCCCCCCCCCCCCCCCCCCCCCceeecCCCCCCCCCCCCCCCCCceEEE
Q 045061            4 NYFYTVDVLFGTPSKSEFLLFDTGSYLIWTQCLPCVNCFNQSAPIFNPNASSTYKRIPCDDLICRRPPFRCENGQCVHRI   83 (359)
Q Consensus         4 ~~~y~~~i~iGtp~Q~~~l~~DTgS~~~wv~~~~c~~c~~~~~~~y~~~~Sst~~~~~~~~~~c~~~~~~c~~~~~~~~~   83 (359)
                      |.+|+++|.||||||++.|++||||+++||+|..|..|.++.++.|||++|+||+..+                 |.|.+
T Consensus        55 d~~Y~~~i~iGtP~Q~~~vi~DTGSs~~Wv~~~~C~~~~~~~~~~yd~~~Sst~~~~~-----------------~~~~~  117 (370)
T d3psga_          55 DTEYFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCSSLACSDHNQFNPDDSSTFEATS-----------------QELSI  117 (370)
T ss_dssp             TCCEEEEEEETTTTEEEEEEEETTCCCEEEEBTTCCSGGGTTSCCBCGGGCTTCEEEE-----------------EEEEE
T ss_pred             CCEEEEEEEEcCCCeEEEEEEeCCCCCeEEECccCCCcccccccccCCCcccccccCC-----------------CcEEE
Confidence            5799999999999999999999999999999999999999999999999999999988                 79999


Q ss_pred             EeCCCCeEEEEEEEEEEEEecCCceeecCceEEEceeCCCCCCCC--CCcceEEecCCCCCc------hHHhhhh---cC
Q 045061           84 NYAGGASASGLVSTETFTFHLKNKLVCVPGVIFGCSNDNRDFSFD--GNIAGILGFSVSPFS------LLGQLKS---TA  152 (359)
Q Consensus        84 ~y~~g~~~~G~~~~D~v~i~~~~~~~~~~~~~fg~~~~~~~~~~~--~~~~GilGLg~~~~s------~~~ql~~---~~  152 (359)
                      .|++|+ +.|.++.|++.++    .+.++++.|++++.... .+.  ...+||+|||++..+      +..++..   +.
T Consensus       118 ~Yg~Gs-~~G~~~~d~~~~~----~~~~~~~~f~~~~~~~~-~~~~~~~~~Gi~gl~~~~~~~~~~~~~~~~l~~~~~i~  191 (370)
T d3psga_         118 TYGTGS-MTGILGYDTVQVG----GISDTNQIFGLSETEPG-SFLYYAPFDGILGLAYPSISASGATPVFDNLWDQGLVS  191 (370)
T ss_dssp             ESSSCE-EEEEEEEEEEEET----TEEEEEEEEEEECSCCC-GGGGGCSCSEEEECSCGGGCGGGCCCHHHHHHHTTCSS
T ss_pred             EeCCce-EEEEEEEEEEeee----ceeeeeeEEEEEeeccC-ceecccccccccccccCcccccCCCchhhhhhhhcccc
Confidence            999998 9999999999999    47889999999998876 433  378999999987543      4445433   35


Q ss_pred             CCceEEeccccCCCCCcceeEEECCCCc-cCCCCceeeeeecCCCCcEEEEEeEEEECCEEeecCCCccccccCCCCcEE
Q 045061          153 QGLFSYCLVYAYREMEATSILRFGKDAN-IQRKDMKTIRMFVDRSSHYYLSLQDISVADHRIGFAPGTFALRRNGTGGCM  231 (359)
Q Consensus       153 ~~~fs~~l~~~~~~~~~~g~l~~Gg~d~-~~~~~i~~~~~~~~~~~~w~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~~i  231 (359)
                      ++.|++|+.+..   ...|.|+|||+|+ .+.+++.|+|+..  ..+|.+.++++.+++..+.....         ..++
T Consensus       192 ~~~fs~~l~~~~---~~~g~l~~Gg~d~~~~~~~l~~~p~~~--~~~w~v~~~~i~v~g~~~~~~~~---------~~ai  257 (370)
T d3psga_         192 QDLFSVYLSSND---DSGSVVLLGGIDSSYYTGSLNWVPVSV--EGYWQITLDSITMDGETIACSGG---------CQAI  257 (370)
T ss_dssp             SSEEEEEEC--------CEEEEETCCCGGGBSSCCEEEECSE--ETTEEEEECEEESSSSEEECTTC---------EEEE
T ss_pred             cceeEEEeecCC---CCCceEecCCcCchhcccceeEEeecc--cceEEEEEeeEEeCCeEEecCCC---------ccEE
Confidence            789999998765   5679999999995 5889999999988  78999999999999887764332         4799


Q ss_pred             EecCCcccccCchHHHHHHHHHHHHhhccCccccCCCccccccceecccCccccceEEEEEcCcEEEEcCCceEEEEcCC
Q 045061          232 IDTGAIATFIQRGPYEVVMRHFDEHFTSFGRQRMHNASEDWEYCYRYDSRFRAYASMTFHFDRADFKVEPTYMYFIFQNE  311 (359)
Q Consensus       232 iDtGt~~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~p~l~~~f~g~~~~i~~~~y~~~~~~~  311 (359)
                      |||||++++||++++++|.+++.+...        ....+.++|+..+    .+|+|+|.|+|+.+.|+|++|+++..  
T Consensus       258 iDSGTs~~~lp~~~~~~i~~~l~~~~~--------~~~~~~~~C~~~~----~~P~l~f~f~g~~~~l~~~~yi~~~~--  323 (370)
T d3psga_         258 VDTGTSLLTGPTSAIANIQSDIGASEN--------SDGEMVISCSSID----SLPDIVFTIDGVQYPLSPSAYILQDD--  323 (370)
T ss_dssp             ECTTCCSEEEEHHHHHHHHHHTTCEEC--------TTCCEECCGGGGG----GCCCEEEEETTEEEEECHHHHEEECS--
T ss_pred             EecCCceEeCCHHHHHHHHHHhCCeee--------cCCcEEEeccccC----CCceEEEEECCEEEEEChHHeEEEcC--
Confidence            999999999999999999998865432        1345678898876    89999999999999999999999754  


Q ss_pred             CeEEE-EEE--c----CCCceeecccceeeeEEEEECCCCEEEEeeC
Q 045061          312 GYFCV-AIS--F----SDRNSVVGAWQQQDTRFVYDLNTGTIQFVPE  351 (359)
Q Consensus       312 ~~~C~-~~~--~----~~~~~iLG~~fl~~~y~vfD~~~~~igfa~~  351 (359)
                       ..|+ .+.  .    .++.||||++|||++|+|||++++|||||++
T Consensus       324 -~~c~~~~~~~~~~~~~~~~~ILG~~flr~~y~vfD~~~~~IGfAp~  369 (370)
T d3psga_         324 -DSCTSGFEGMDVPTSSGELWILGDVFIRQYYTVFDRANNKVGLAPV  369 (370)
T ss_dssp             -SCEEESEEEECCCTTSCCEEEECHHHHTTEEEEEETTTTEEEEEEB
T ss_pred             -CeEEEEEEEcccCCCCCCcEEECHHhhcCEEEEEECCCCEEEEEec
Confidence             3463 232  1    1257899999999999999999999999986
>d2apra_ b.50.1.2 (A:) Acid protease {Bread mold (Rhizopus chinensis) [TaxId: 4843]} Back     information, alignment and structure
>d1dpja_ b.50.1.2 (A:) Acid protease {Baker's yeast (Saccharomyces cerevisiae), proteinase A [TaxId: 4932]} Back     information, alignment and structure
>d1j71a_ b.50.1.2 (A:) Acid protease {Yeast (Candida tropicalis) [TaxId: 5482]} Back     information, alignment and structure
>d1smra_ b.50.1.2 (A:) Chymosin (synonym: renin) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1am5a_ b.50.1.2 (A:) Pepsin(ogen) {Atlantic cod (Gadus morhua) [TaxId: 8049]} Back     information, alignment and structure
>d1miqa_ b.50.1.2 (A:) Plasmepsin (a hemoglobin-degrading enzyme) {Plasmodium vivax [TaxId: 5855]} Back     information, alignment and structure
>d1mppa_ b.50.1.2 (A:) Pepsin {Mucor pusillus [TaxId: 4840]} Back     information, alignment and structure
>d1eaga_ b.50.1.2 (A:) Acid protease {Yeast (Candida albicans) [TaxId: 5476]} Back     information, alignment and structure
>d1hrna_ b.50.1.2 (A:) Chymosin (synonym: renin) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2qp8a1 b.50.1.2 (A:60-446) beta-secretase (memapsin) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1bxoa_ b.50.1.2 (A:) Acid protease {Fungus (Penicillium janthinellum), penicillopepsin [TaxId: 5079]} Back     information, alignment and structure
>d2bjua1 b.50.1.2 (A:1-329) Plasmepsin (a hemoglobin-degrading enzyme) {Plasmodium falciparum, plasmepsin II [TaxId: 5833]} Back     information, alignment and structure
>d1izea_ b.50.1.2 (A:) Acid protease {Fungus (Aspergillus oryzae) [TaxId: 5062]} Back     information, alignment and structure
>d1wkra_ b.50.1.2 (A:) Acid protease {Irpex lacteus (Polyporus tulipiferae), Polyporopepsin [TaxId: 5319]} Back     information, alignment and structure
>d3cmsa_ b.50.1.2 (A:) Chymosin (synonym: renin) {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1qdma2 b.50.1.2 (A:2-247,A:248-338) Plant acid proteinase, phytepsin {Barley (Hordeum vulgare) [TaxId: 4513]} Back     information, alignment and structure
>d1t6ex_ b.50.1.2 (X:) Xylanase inhibitor TAXI-I {Wheat (Triticum aestivum) [TaxId: 4565]} Back     information, alignment and structure
>d2nmza1 b.50.1.1 (A:1-99) Human immunodeficiency virus type 1 protease {Human immunodeficiency virus type 1 [TaxId: 11676]} Back     information, alignment and structure
>d4fiva_ b.50.1.1 (A:) Feline immunodeficiency virus (FIV) protease {Feline immunodeficiency virus [TaxId: 11673]} Back     information, alignment and structure
>d2fmba_ b.50.1.1 (A:) EIAV protease {Equine infectious anemia virus [TaxId: 11665]} Back     information, alignment and structure