Citrus Sinensis ID: 045080

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200---
Protein Sequence
MHTTFPPLSSSPSPSFQSSPSINASPSKSSPNLAAPPPIVLSPCAACKSLRRRCDEKCVLAPYFPPTEPQNFIIVHRVFGASNIIKCLQGLPECQRSDAVSSMVYEANARIRNPVHGCAGAISQLQKQVIKLQAELAKAQAETVSMQCQRDNLVALICKEMTTQFPQETMNRVLPQQQFNDDDATTCYLDDKDFASTWDALWT
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccHHHHHHHccccccccccccccccccHHHHHHHHHHcHHHHHHHHHccccccHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHcccccEEcccccccccHHHHHHHHHHcHHHHHHHHHHccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHccccccccccccccccccccccccccEEccccccccccccccc
Coil and Loop (DISEMBL)
mhttfpplssspspsfqsspsinaspsksspnlaapppivlspcaaCKSLRRrcdekcvlapyfpptepqnfiIVHRVFGASNIIKClqglpecqrsdaVSSMVYEANarirnpvhgcaGAISQLQKQVIKLQAELAKAQAETVSMQCQRDNLVALICKEMttqfpqetmnrvlpqqqfndddattcylddkdfaSTWDALWT
Flexible Loop (DISEMBL)
mhttfpplssspspsfqssPSINASPSKSSPNLAAPPPIVLSPCAACKSLRRRCDEKCVLAPYFPPTEPQNFIIVHRVFGASNIIKCLQGLPECQRSDAVSSMVYEANARIRNPVHGCAGAISQLQKQVIKLQAELAKAQAETVSMQCQRDNLVALICKEMTTQFPQETMNRVLPQQQFNDDDATTCYLDDKDFASTWDALWT
Low Complexity Region (SEG)
MHTTFpplssspspsfqsspsinaspsksspNLAAPPPIVLSPCAACKSLRRRCDEKCVLAPYFPPTEPQNFIIVHRVFGASNIIKCLQGLPECQRSDAVSSMVYEANARIRNPVHGCAGAISQLQKQVIKLQAELAKAQAETVSMQCQRDNLVALICKEMTTQFPQETMNRVLPQQQFNDDDATTCYLDDKDFASTWDALWT
Disordered region (IsUnstruct)
**************************************IVLSPCAACKSLRRRCDEKCVLAPYFPPTEPQNFIIVHRVFGASNIIKCLQGLPECQRSDAVSSMVYEANARIRNPVHGCAGAISQLQKQVIKLQAELAKAQAETVSMQCQRDNLVALICKEMTTQFPQETMNRVLP**QFNDDDATTCYLDDKDFASTWDALW*
Disordered Region (DISOPRED)
********************************************AACKSLRRRCDEKCVLAPYFPPTEPQNFIIVHRVFGASNIIKCLQGLPECQRSDAVSSMVYEANARIRNPVHGCAGAISQLQKQVIKLQAELAKAQAETVS*******************************************LDDKDFAS*WDALWT
Disordered Region (DISEMBL)
********************************LAAPPPIVLSPCAACKSLRRRCDEKCVLAPYFPPTEPQNFIIVHRVFGASNIIKCLQGLPECQRSDAVSSMVYEANARIRNPVHGCAGAISQLQKQVIKLQA***********MQCQRDNLVALICKEMTTQFPQETMNRVLPQQQFNDDDATTCYLDDKDFASTWDALWT
Disordered Region (DISPRO)
****************************************LSPCAACKSLRRRCDEKCVLAPYFPPTEPQNFIIVHRVFGASNIIKCLQGLPECQRSDAVSSMVYEANARIRNPVHGCAGAISQLQKQVIKLQAELAKAQAETVSMQCQRDNLVALICKEMT**********************TTCYL***DFASTWDALWT
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MHTTFPPLSSSPSPSFQSSPSINASPSKSSPNLAAPPPIVLSPCAACKSLRRRCDEKCVLAPYFPPTEPQNFIIVHRVFGASNIIKCLQGLPECQRSDAVSSMVYEANARIRNPVHGCAGAxxxxxxxxxxxxxxxxxxxxxTVSMQCQRDNLVALICKEMTTQFPQETMNRVLPQQQFNDDDATTCYLDDKDFASTWDALWT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	203	2.2.26 [Sep-21-2011]
Q9LQR0	190	LOB domain-containing pro	yes	no	0.773	0.826	0.615	1e-49
Q9SK08	232	LOB domain-containing pro	no	no	0.793	0.693	0.532	1e-46
Q8LBW3	193	LOB domain-containing pro	no	no	0.541	0.569	0.627	1e-35
Q9SHE9	172	LOB domain-containing pro	no	no	0.778	0.918	0.518	5e-33
Q9SA51	165	LOB domain-containing pro	no	no	0.733	0.903	0.467	1e-32
O64836	311	LOB domain-containing pro	no	no	0.512	0.334	0.596	2e-32
Q9AT61	268	LOB domain-containing pro	no	no	0.581	0.440	0.512	9e-31
Q9FML4	186	Protein LATERAL ORGAN BOU	no	no	0.497	0.543	0.603	2e-30
Q8L8Q3	159	LOB domain-containing pro	no	no	0.497	0.635	0.594	3e-30
Q32SG3	260	LOB domain-containing pro	N/A	no	0.522	0.407	0.575	5e-30

>sp|Q9LQR0|LBD1_ARATH LOB domain-containing protein 1 OS=Arabidopsis thaliana GN=LBD1 PE=2 SV=1

 Score =  196 bits (497), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 104/169 (61%), Positives = 121/169 (71%), Gaps = 12/169 (7%)

Query: 39  IVLSPCAACKSLRRRCDEKCVLAPYFPPTEPQNFIIVHRVFGASNIIKCLQGLPECQRSD 98
           +VLSPCAACK LRRRC E+CVLAPYFPPT+P  F I HRVFGASNIIK LQ LPE QR+D
Sbjct: 29  VVLSPCAACKILRRRCAERCVLAPYFPPTDPAKFTIAHRVFGASNIIKFLQELPESQRTD 88

Query: 99  AVSSMVYEANARIRNPVHGCAGAISQLQKQVIKLQAELAKAQAETVSMQCQRDNLVALIC 158
           AV+SMVYEA ARIR+PV+GCAGAI  LQ+QV +LQA+LAKAQ E V+MQ QR NL+ LI 
Sbjct: 89  AVNSMVYEAEARIRDPVYGCAGAIYHLQRQVSELQAQLAKAQVEMVNMQFQRSNLLELI- 147

Query: 159 KEMTTQFPQETMNRVLPQQQFNDDDATTCYLDDKDFAST----WDALWT 203
             M  Q  QE  N       F  +D    +L+DK   ++    WD LWT
Sbjct: 148 YNMDQQQKQEQDN-----MSFESNDLG--FLEDKSNTNSSMLWWDPLWT 189

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SK08|LBD11_ARATH LOB domain-containing protein 11 OS=Arabidopsis thaliana GN=LBD11 PE=2 SV=2

 Score =  186 bits (472), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 99/186 (53%), Positives = 124/186 (66%), Gaps = 25/186 (13%)

Query: 39  IVLSPCAACKSLRRRCDEKCVLAPYFPPTEPQNFIIVHRVFGASNIIKCLQGLPECQRSD 98
           +VLSPCAACK LRRRC +KCVLAPYFPPT+P  F I HRVFGASNIIK LQ LPE QR+D
Sbjct: 51  VVLSPCAACKILRRRCADKCVLAPYFPPTDPAKFTIAHRVFGASNIIKFLQELPESQRTD 110

Query: 99  AVSSMVYEANARIRNPVHGCAGAISQLQKQVIKLQAELAKAQAETVSMQCQRDNLVALIC 158
           AV+SMVYEA AR+R+PV+GCAGAI  LQ+QV +LQA+LAK Q E V MQ QR +L+ LI 
Sbjct: 111 AVNSMVYEAGARMRDPVYGCAGAIYHLQRQVSELQAQLAKTQVELVGMQLQRSSLLELIY 170

Query: 159 --------------KEMTTQFPQETMNRVL--PQQQFNDDDATTCYLDDKDFA-----ST 197
                         ++M+ +   E+ +  +  P ++ ND      +L+D +       S 
Sbjct: 171 NMEQTKLSVQEQGQQKMSFESSFESGDEFISSPDEESND----LGFLEDNNNNNNSSMSW 226

Query: 198 WDALWT 203
           WD LWT
Sbjct: 227 WDPLWT 232

Arabidopsis thaliana (taxid: 3702)

>sp|Q8LBW3|LBD12_ARATH LOB domain-containing protein 12 OS=Arabidopsis thaliana GN=LBD12 PE=2 SV=2

 Score =  149 bits (377), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 69/110 (62%), Positives = 87/110 (79%)

Query: 42  SPCAACKSLRRRCDEKCVLAPYFPPTEPQNFIIVHRVFGASNIIKCLQGLPECQRSDAVS 101
           SPCA+CK LRRRC + C+ APYFPP +P  F IVH+VFGASN+ K LQ LP  QR+DAV+
Sbjct: 7   SPCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKVFGASNVSKMLQELPVHQRADAVN 66

Query: 102 SMVYEANARIRNPVHGCAGAISQLQKQVIKLQAELAKAQAETVSMQCQRD 151
           S+V+EANAR+R+PV+GC GAIS LQ QV +LQ +LA AQAE + +Q Q +
Sbjct: 67  SLVFEANARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQNE 116

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SHE9|LBD4_ARATH LOB domain-containing protein 4 OS=Arabidopsis thaliana GN=LBD4 PE=2 SV=1

 Score =  140 bits (353), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 85/164 (51%), Positives = 108/164 (65%), Gaps = 6/164 (3%)

Query: 42  SPCAACKSLRRRCDEKCVLAPYFPPTEPQNFIIVHRVFGASNIIKCLQGLPECQRSDAVS 101
           SPCAACK LRRRC + CV +PYFP  EPQ F  VHRVFGASN+ K LQ LP  QR DAVS
Sbjct: 12  SPCAACKLLRRRCAQDCVFSPYFPADEPQKFANVHRVFGASNVNKMLQELPIHQRGDAVS 71

Query: 102 SMVYEANARIRNPVHGCAGAISQLQKQVIKLQAELAKAQAETVSMQC-QRDNLVAL-ICK 159
           SMVYEANAR+R+PV+GC GAIS LQ+Q+  LQA+LA AQAE V ++  Q  N     +C 
Sbjct: 72  SMVYEANARVRDPVYGCVGAISSLQQQIDVLQAQLALAQAEVVHLRVRQSTNFPGHGLCP 131

Query: 160 EMTTQFPQETMNRVLPQQQFNDDDATTCYLDDKDFASTWDALWT 203
           +  +     +  +V PQ    D+     ++D  D AS  +++W+
Sbjct: 132 DSPSSSGSPSSKQVSPQ----DNKGMFSHMDIVDEASLGESMWS 171

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SA51|LBD3_ARATH LOB domain-containing protein 3 OS=Arabidopsis thaliana GN=LBD3 PE=2 SV=1

 Score =  139 bits (351), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 78/167 (46%), Positives = 100/167 (59%), Gaps = 18/167 (10%)

Query: 41  LSPCAACKSLRRRC-DEKCVLAPYFPPTEPQNFIIVHRVFGASNIIKCLQGLPECQRSDA 99
           +SPCA CK LRR+C  + CV APYFP  EP  F IVH++FGASN+ K LQ L E  RSDA
Sbjct: 12  VSPCAGCKLLRRKCVKDSCVFAPYFPAKEPYKFAIVHKIFGASNVNKMLQELSENHRSDA 71

Query: 100 VSSMVYEANARIRNPVHGCAGAISQLQKQVIKLQAELAKAQAETVSMQCQRDNLVALICK 159
           V SMVYEANARI++PV+GC G IS L +Q+  LQ +LA AQAE + ++            
Sbjct: 72  VDSMVYEANARIQDPVYGCVGTISSLHRQLETLQTQLAFAQAELIHIR---------TLH 122

Query: 160 EMTTQFPQETMNRV-LPQQQ--FNDDDATTCYLDDKDFASTWDALWT 203
            + T+ P  T + V  P  +  ++D D    Y DD       D LW+
Sbjct: 123 RIHTKPPPYTASTVTFPSNKDFYSDIDMAVAYTDD-----AGDFLWS 164

Arabidopsis thaliana (taxid: 3702)

>sp|O64836|LBD10_ARATH LOB domain-containing protein 10 OS=Arabidopsis thaliana GN=LBD10 PE=2 SV=1

 Score =  139 bits (349), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 62/104 (59%), Positives = 77/104 (74%)

Query: 42  SPCAACKSLRRRCDEKCVLAPYFPPTEPQNFIIVHRVFGASNIIKCLQGLPECQRSDAVS 101
           +PCAACK LRR+C ++CV APYFPPT PQ FI VHRVFGASN+ K L  LP  QR D V+
Sbjct: 4   TPCAACKLLRRKCTQECVFAPYFPPTNPQKFIFVHRVFGASNVTKILNDLPPDQREDTVN 63

Query: 102 SMVYEANARIRNPVHGCAGAISQLQKQVIKLQAELAKAQAETVS 145
           S+ YEA ARIR+P++GC G IS LQ+ + K+Q +L  A+ E V 
Sbjct: 64  SLFYEAEARIRDPIYGCVGLISFLQQYLKKIQQDLLTAKEELVG 107

Arabidopsis thaliana (taxid: 3702)

>sp|Q9AT61|LBD13_ARATH LOB domain-containing protein 13 OS=Arabidopsis thaliana GN=LBD13 PE=2 SV=2

 Score =  133 bits (334), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 62/121 (51%), Positives = 81/121 (66%), Gaps = 3/121 (2%)

Query: 32  NLAAPPPIVL---SPCAACKSLRRRCDEKCVLAPYFPPTEPQNFIIVHRVFGASNIIKCL 88
           ++A PP   L   +PCAACK LRRRC E+C  +PYF P EP  F  VH+VFGASN+ K L
Sbjct: 38  HVAVPPGTTLNTVTPCAACKLLRRRCAEECPFSPYFSPHEPHKFAAVHKVFGASNVSKML 97

Query: 89  QGLPECQRSDAVSSMVYEANARIRNPVHGCAGAISQLQKQVIKLQAELAKAQAETVSMQC 148
             + E QR DA +S+VYEAN R+R+P++GC GAIS LQ  +  LQ+EL   + E +  + 
Sbjct: 98  LEVGESQRGDAANSLVYEANLRLRDPIYGCMGAISALQHHIQSLQSELTTVRTEILRHKY 157

Query: 149 Q 149
           Q
Sbjct: 158 Q 158

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FML4|LOB_ARATH Protein LATERAL ORGAN BOUNDARIES OS=Arabidopsis thaliana GN=LOB PE=2 SV=1

 Score =  132 bits (331), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 61/101 (60%), Positives = 74/101 (73%)

Query: 42  SPCAACKSLRRRCDEKCVLAPYFPPTEPQNFIIVHRVFGASNIIKCLQGLPECQRSDAVS 101
           SPCAACK LRR+C   C+ APYFPP EP  F  VH++FGASN+ K L  L   QR DAV+
Sbjct: 10  SPCAACKFLRRKCMPGCIFAPYFPPEEPHKFANVHKIFGASNVTKLLNELLPHQREDAVN 69

Query: 102 SMVYEANARIRNPVHGCAGAISQLQKQVIKLQAELAKAQAE 142
           S+ YEA AR+R+PV+GC GAIS LQ+QV +LQ EL  A A+
Sbjct: 70  SLAYEAEARVRDPVYGCVGAISYLQRQVHRLQKELDAANAD 110

Not known; ectopic expression of LOB leads to alterations in the size and shape of leaves and floral organs and causes male and female sterility.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8L8Q3|LBD25_ARATH LOB domain-containing protein 25 OS=Arabidopsis thaliana GN=LBD25 PE=2 SV=3

 Score =  131 bits (329), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 60/101 (59%), Positives = 75/101 (74%)

Query: 42  SPCAACKSLRRRCDEKCVLAPYFPPTEPQNFIIVHRVFGASNIIKCLQGLPECQRSDAVS 101
           SPCAACK LRR+C   CV APYFPP EP  F  VHR+FGASN+ K L  +   QR DAV+
Sbjct: 38  SPCAACKFLRRKCTSDCVFAPYFPPEEPTKFANVHRIFGASNVSKILHEVAPHQREDAVN 97

Query: 102 SMVYEANARIRNPVHGCAGAISQLQKQVIKLQAELAKAQAE 142
           S+ YEA AR+++PV+GC GAIS LQ+QV++LQ EL +  A+
Sbjct: 98  SLAYEAEARLKDPVYGCVGAISVLQRQVLRLQRELEETNAD 138

Arabidopsis thaliana (taxid: 3702)

>sp|Q32SG3|LBD6_MAIZE LOB domain-containing protein 6 OS=Zea mays GN=LBD6 PE=1 SV=1

 Score =  130 bits (328), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 61/106 (57%), Positives = 75/106 (70%)

Query: 42  SPCAACKSLRRRCDEKCVLAPYFPPTEPQNFIIVHRVFGASNIIKCLQGLPECQRSDAVS 101
           SPCAACK LRR+C   CV APYFPP  PQ F+ VHRVFGASN+ K L  L   QR DAV+
Sbjct: 32  SPCAACKFLRRKCQPDCVFAPYFPPDNPQKFVHVHRVFGASNVTKLLNELHPFQREDAVN 91

Query: 102 SMVYEANARIRNPVHGCAGAISQLQKQVIKLQAELAKAQAETVSMQ 147
           S+ YEA+ R+R+PV+GC G IS LQ  + +LQ +LA+A+ E    Q
Sbjct: 92  SLAYEADMRLRDPVYGCVGVISILQHNLRQLQQDLARAKYELSKYQ 137

Promotes the switch from proliferation to differentiation in the embryo sac. Negative regulator of cell proliferation in the adaxial side of leaves. Regulates the formation of a symmetric lamina and the establishment of venation. Interacts directly with RS2 (rough sheath 2) to repress some knox homeobox genes.

Zea mays (taxid: 4577)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	203
224100841	178	predicted protein [Populus trichocarpa]	0.847	0.966	0.646	2e-59
388518463	223	unknown [Lotus japonicus]	0.798	0.726	0.688	4e-59
315633204	219	lateral organ boundaries domain 1 [Popul	0.847	0.785	0.666	2e-57
224109694	213	predicted protein [Populus trichocarpa]	0.753	0.718	0.681	2e-55
357443399	229	LOB domain-containing protein [Medicago	0.768	0.681	0.677	2e-53
356535674	222	PREDICTED: LOB domain-containing protein	0.753	0.689	0.662	2e-53
356576187	222	PREDICTED: LOB domain-containing protein	0.753	0.689	0.662	4e-53
225435217	202	PREDICTED: LOB domain-containing protein	0.798	0.801	0.623	5e-53
449451890	203	PREDICTED: LOB domain-containing protein	0.768	0.768	0.672	6e-53
356557485	210	PREDICTED: LOB domain-containing protein	0.871	0.842	0.602	7e-53

>gi|224100841|ref|XP_002312035.1| predicted protein [Populus trichocarpa] gi|222851855|gb|EEE89402.1| predicted protein [Populus trichocarpa]

 Score =  234 bits (596), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 117/181 (64%), Positives = 141/181 (77%), Gaps = 9/181 (4%)

Query: 25  SPSKSSPNLAA--PPPIVLSPCAACKSLRRRCDEKCVLAPYFPPTEPQNFIIVHRVFGAS 82
           SP  +SP+ A   PPP+V++PCAACK LRRRC +KCVLAPYFPP+EP  F I HRVFGAS
Sbjct: 5   SPGLTSPSAATLPPPPVVITPCAACKILRRRCVDKCVLAPYFPPSEPYKFTIAHRVFGAS 64

Query: 83  NIIKCLQGLPECQRSDAVSSMVYEANARIRNPVHGCAGAISQLQKQVIKLQAELAKAQAE 142
           NIIK LQ LPE QR+DAVSSMVYEA+ARIR+PV+GCAGAISQLQKQV  LQA+LAKAQAE
Sbjct: 65  NIIKFLQELPESQRADAVSSMVYEASARIRDPVYGCAGAISQLQKQVSDLQAQLAKAQAE 124

Query: 143 TVSMQCQRDNLVALICKEMTTQFPQETMNRVLPQQQFNDDDATTCYLDDKDFASTWDALW 202
            V+MQCQ+ NLVAL+C EM     Q     +L Q Q+ D   T+C+LD+ +  ++W+ LW
Sbjct: 125 VVNMQCQQANLVALLCMEMK----QSQQEPILQQHQYID---TSCFLDENNLGASWEPLW 177

Query: 203 T 203
           T
Sbjct: 178 T 178

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388518463|gb|AFK47293.1| unknown [Lotus japonicus]

 Score =  233 bits (593), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 115/167 (68%), Positives = 134/167 (80%), Gaps = 5/167 (2%)

Query: 38  PIVLSPCAACKSLRRRCDEKCVLAPYFPPTEPQNFIIVHRVFGASNIIKCLQGLPECQRS 97
           P+V+SPCAACK LRRRC EKCVLAPYFPPT+P  F I HRVFGASNIIK LQ LPE QR+
Sbjct: 61  PVVVSPCAACKVLRRRCVEKCVLAPYFPPTDPLKFTIAHRVFGASNIIKFLQELPESQRA 120

Query: 98  DAVSSMVYEANARIRNPVHGCAGAISQLQKQVIKLQAELAKAQAETVSMQCQRDNLVALI 157
           DAVSSMVYEANARIR+PV+GCAGAI QLQKQV +LQA+LAKAQAE V+MQCQ  NL+ALI
Sbjct: 121 DAVSSMVYEANARIRDPVYGCAGAICQLQKQVSELQAQLAKAQAEMVNMQCQHANLLALI 180

Query: 158 CKEMT-TQFPQETMNRVLPQQQFNDDDATTCYLDDKDFASTWDALWT 203
           C EMT TQ P++  N + PQ   +     +C+L+D +F S W+ LWT
Sbjct: 181 CMEMTQTQSPEQQQNIIQPQTHVD----MSCFLEDNNFGSAWEPLWT 223

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|315633204|gb|ADU54137.1| lateral organ boundaries domain 1 [Populus tremula x Populus alba]

 Score =  228 bits (580), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 124/186 (66%), Positives = 143/186 (76%), Gaps = 14/186 (7%)

Query: 25  SPSKSSPNLA-------APPPIVLSPCAACKSLRRRCDEKCVLAPYFPPTEPQNFIIVHR 77
           SP+KSSPNL         PPP V+SPCAACK LRRRC +KCVLAPYFPP+EP  F I HR
Sbjct: 41  SPTKSSPNLTLPSAATPPPPPAVVSPCAACKILRRRCVDKCVLAPYFPPSEPYKFTIAHR 100

Query: 78  VFGASNIIKCLQGLPECQRSDAVSSMVYEANARIRNPVHGCAGAISQLQKQVIKLQAELA 137
           VFGASNIIK LQ LPE QR+DAVSSMVYEANARIR+PV+GCAGAISQLQKQV  LQA+LA
Sbjct: 101 VFGASNIIKFLQELPESQRADAVSSMVYEANARIRDPVYGCAGAISQLQKQVSDLQAQLA 160

Query: 138 KAQAETVSMQCQRDNLVALICKEMTTQFPQETMNRVLPQQQFNDDDATTCYLDDKDFAST 197
           KAQAE VSMQCQ+ NLVAL+C EMT    Q     +L Q Q+ D   T+C+LD+ +  ++
Sbjct: 161 KAQAEVVSMQCQQANLVALLCMEMT----QSQQEPILQQHQYVD---TSCFLDENNLGTS 213

Query: 198 WDALWT 203
           W+ LWT
Sbjct: 214 WEPLWT 219

Source: Populus tremula x Populus alba

Species: Populus tremula x Populus alba

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224109694|ref|XP_002315279.1| predicted protein [Populus trichocarpa] gi|222864319|gb|EEF01450.1| predicted protein [Populus trichocarpa]

 Score =  221 bits (562), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 109/160 (68%), Positives = 127/160 (79%), Gaps = 7/160 (4%)

Query: 44  CAACKSLRRRCDEKCVLAPYFPPTEPQNFIIVHRVFGASNIIKCLQGLPECQRSDAVSSM 103
           CAACK LRRRC +KCVLAPYFPP+EP  F I HRVFGASNIIK LQ LPE QR+DAVSSM
Sbjct: 61  CAACKILRRRCVDKCVLAPYFPPSEPYKFTIAHRVFGASNIIKFLQELPESQRADAVSSM 120

Query: 104 VYEANARIRNPVHGCAGAISQLQKQVIKLQAELAKAQAETVSMQCQRDNLVALICKEMTT 163
           VYEANARIR+PV+GCAGAISQLQKQV  LQA+LAKAQAE V+MQCQ+ NLVAL+C EMT 
Sbjct: 121 VYEANARIRDPVYGCAGAISQLQKQVSDLQAQLAKAQAEVVNMQCQQANLVALLCMEMT- 179

Query: 164 QFPQETMNRVLPQQQFNDDDATTCYLDDKDFASTWDALWT 203
              Q     +L Q Q+ D   T+C+LD+ +  ++W+ LWT
Sbjct: 180 ---QSQQEPILQQHQYVD---TSCFLDENNLGTSWEPLWT 213

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357443399|ref|XP_003591977.1| LOB domain-containing protein [Medicago truncatula] gi|355481025|gb|AES62228.1| LOB domain-containing protein [Medicago truncatula]

 Score =  214 bits (544), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 109/161 (67%), Positives = 124/161 (77%), Gaps = 5/161 (3%)

Query: 44  CAACKSLRRRCDEKCVLAPYFPPTEPQNFIIVHRVFGASNIIKCLQGLPECQRSDAVSSM 103
           CAACK LRRRC EKCVLAPYFPPT+P  F I HRVFGASNIIK LQ LPE QR+DAVSSM
Sbjct: 73  CAACKILRRRCVEKCVLAPYFPPTDPLKFTIAHRVFGASNIIKFLQELPEPQRADAVSSM 132

Query: 104 VYEANARIRNPVHGCAGAISQLQKQVIKLQAELAKAQAETVSMQCQRDNLVALICKEMTT 163
           VYEANARIR+PV+GCAGAI QLQKQV +LQ +LAKAQAE V+M CQ+ NLVALIC EM+T
Sbjct: 133 VYEANARIRDPVYGCAGAICQLQKQVSELQTQLAKAQAELVNMHCQQANLVALICMEMST 192

Query: 164 Q-FPQETMNRVLPQQQFNDDDATTCYLDDKDFASTWDALWT 203
           Q  P   M    PQ   +     +C+L+D +F S W+ LWT
Sbjct: 193 QSSPDHDMIINQPQPHVD----MSCFLEDNNFGSAWEPLWT 229

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356535674|ref|XP_003536369.1| PREDICTED: LOB domain-containing protein 1-like [Glycine max]

 Score =  214 bits (544), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 106/160 (66%), Positives = 122/160 (76%), Gaps = 7/160 (4%)

Query: 44  CAACKSLRRRCDEKCVLAPYFPPTEPQNFIIVHRVFGASNIIKCLQGLPECQRSDAVSSM 103
           CAACK LRRRC EKCVLAPYFPPT+P  F I HRVFGASNIIK LQ LPE QR DAVSSM
Sbjct: 70  CAACKILRRRCVEKCVLAPYFPPTDPLKFTIAHRVFGASNIIKFLQELPESQREDAVSSM 129

Query: 104 VYEANARIRNPVHGCAGAISQLQKQVIKLQAELAKAQAETVSMQCQRDNLVALICKEMTT 163
           VYEANARIR+PV+GCAGAI QLQKQV +LQA+LAKAQAE V+MQCQ+ NLVALIC EM+ 
Sbjct: 130 VYEANARIRDPVYGCAGAICQLQKQVSELQAQLAKAQAEVVNMQCQQANLVALICMEMSQ 189

Query: 164 QFPQETMNRVLPQQQFNDDDATTCYLDDKDFASTWDALWT 203
              Q  +    PQ   +     +C+++D  F + W+ LWT
Sbjct: 190 SQEQHVLQ---PQTHVD----MSCFIEDNSFGTAWEPLWT 222

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356576187|ref|XP_003556215.1| PREDICTED: LOB domain-containing protein 1-like [Glycine max]

 Score =  213 bits (542), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 106/160 (66%), Positives = 123/160 (76%), Gaps = 7/160 (4%)

Query: 44  CAACKSLRRRCDEKCVLAPYFPPTEPQNFIIVHRVFGASNIIKCLQGLPECQRSDAVSSM 103
           CAACK LRRRC EKCVLAPYFPPT+P  F I HRVFGASNIIK LQ LPE QR+DAVSSM
Sbjct: 70  CAACKILRRRCVEKCVLAPYFPPTDPLKFTIAHRVFGASNIIKFLQELPESQRADAVSSM 129

Query: 104 VYEANARIRNPVHGCAGAISQLQKQVIKLQAELAKAQAETVSMQCQRDNLVALICKEMTT 163
           VYEANARIR+PV+GCAGAI QLQKQV +LQA+LAKAQAE V+MQCQ+ NLVALIC EM+ 
Sbjct: 130 VYEANARIRDPVYGCAGAICQLQKQVSELQAQLAKAQAEVVNMQCQQANLVALICMEMSQ 189

Query: 164 QFPQETMNRVLPQQQFNDDDATTCYLDDKDFASTWDALWT 203
              Q  +    PQ   +     +C+++D  F + W+ LWT
Sbjct: 190 SQEQHVLQ---PQPHVD----MSCFIEDNSFGTAWEPLWT 222

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225435217|ref|XP_002282070.1| PREDICTED: LOB domain-containing protein 11 [Vitis vinifera] gi|297746208|emb|CBI16264.3| unnamed protein product [Vitis vinifera]

 Score =  213 bits (541), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 106/170 (62%), Positives = 131/170 (77%), Gaps = 8/170 (4%)

Query: 39  IVLSPCAACKSLRRRCDEKCVLAPYFPPTEPQNFIIVHRVFGASNIIKCLQGLPECQRSD 98
           +VLSPCAACK LRRRC +KCVLAPYFPPT+P  F   HRVFGASNIIK LQ LPE QR+D
Sbjct: 36  VVLSPCAACKILRRRCADKCVLAPYFPPTDPAKFTTAHRVFGASNIIKFLQELPEFQRAD 95

Query: 99  AVSSMVYEANARIRNPVHGCAGAISQLQKQVIKLQAELAKAQAETVSMQCQRDNLVALIC 158
           AVSSMVYEA ARIR+PV+GCAGAI QLQKQ+ +LQA+LAK QAE V+MQCQ+ NLV +IC
Sbjct: 96  AVSSMVYEAQARIRDPVYGCAGAICQLQKQLDELQAQLAKTQAELVNMQCQQANLVTMIC 155

Query: 159 KEM-TTQFPQ----ETMNRVLPQQQFNDDDATTCYLDDKDFASTWDALWT 203
            EM  +Q PQ    E+++ ++  Q +  +   + +LDD +  +TW+ LWT
Sbjct: 156 MEMEMSQSPQPSSEESLDSLISPQSYQSN---SFFLDDSNIGATWEPLWT 202

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449451890|ref|XP_004143693.1| PREDICTED: LOB domain-containing protein 1-like [Cucumis sativus] gi|449530814|ref|XP_004172387.1| PREDICTED: LOB domain-containing protein 1-like [Cucumis sativus]

 Score =  212 bits (540), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 111/165 (67%), Positives = 127/165 (76%), Gaps = 9/165 (5%)

Query: 39  IVLSPCAACKSLRRRCDEKCVLAPYFPPTEPQNFIIVHRVFGASNIIKCLQGLPECQRSD 98
           +VLSPCAACK LRRRC EKCVLAPYFPPT+P  F I HRVFGASNIIK LQ LPECQR+D
Sbjct: 48  VVLSPCAACKILRRRCVEKCVLAPYFPPTDPLKFTIAHRVFGASNIIKFLQELPECQRTD 107

Query: 99  AVSSMVYEANARIRNPVHGCAGAISQLQKQVIKLQAELAKAQAETVSMQCQRDNLVALIC 158
           AVSSMVYEANAR+R+PV+G AGAI QLQKQV +LQA+LAKA+AE  +MQ Q+ NL+ALIC
Sbjct: 108 AVSSMVYEANARLRDPVYGSAGAICQLQKQVSELQAQLAKARAEVANMQQQQANLLALIC 167

Query: 159 KEMTTQFPQETMNRVLPQQQFNDDDATTCYLDDKDFASTWDALWT 203
            EM  Q P+        Q Q  D   TTC+LDD   +S W+ LWT
Sbjct: 168 MEM-RQSPEPVW-----QPQLVD---TTCFLDDATLSSPWEPLWT 203

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356557485|ref|XP_003547046.1| PREDICTED: LOB domain-containing protein 11-like [Glycine max]

 Score =  212 bits (540), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 118/196 (60%), Positives = 139/196 (70%), Gaps = 19/196 (9%)

Query: 23  NASPSKSSPNLAAPPPI--VLSPCAACKSLRRRCDEKCVLAPYFPPTEPQNFIIVHRVFG 80
           N + S SS  L++PP +  V+SPCAACK LRRRC EKCVLAPYFP TEP  F   HRVFG
Sbjct: 19  NTTFSHSSNTLSSPPQVQVVMSPCAACKILRRRCAEKCVLAPYFPLTEPSKFTTAHRVFG 78

Query: 81  ASNIIKCLQGLPECQRSDAVSSMVYEANARIRNPVHGCAGAISQLQKQVIKLQAELAKAQ 140
           ASNIIK LQ LPE QR+DAV+SMVYEA ARIR+PV+GCAGAI QLQKQV +LQA+LAKAQ
Sbjct: 79  ASNIIKFLQELPESQRADAVASMVYEAGARIRDPVYGCAGAICQLQKQVNELQAQLAKAQ 138

Query: 141 AETVSMQCQRDNLVALICKEMT-TQFPQETMNRVLPQQQFNDDDATTC----YLDDKDF- 194
           AE V+MQ Q+ NLVALIC EM  TQ PQE      PQQ  ++  ++T     Y ++ +F 
Sbjct: 139 AEVVNMQLQQANLVALICMEMAQTQTPQE----YSPQQSVDNFISSTSHSSGYQNNLNFF 194

Query: 195 -------ASTWDALWT 203
                   S W+ LWT
Sbjct: 195 EENTNNLNSLWEPLWT 210

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	203
TAIR|locus:2026611	190	LBD1 "LOB domain-containing pr	0.798	0.852	0.597	1.1e-46
TAIR|locus:2056578	232	LBD11 "LOB domain-containing p	0.650	0.568	0.691	1.3e-43
TAIR|locus:2197500	172	LBD4 "LOB domain-containing pr	0.778	0.918	0.518	8e-37
TAIR|locus:2060842	193	ASL5 [Arabidopsis thaliana (ta	0.541	0.569	0.627	3.6e-34
TAIR|locus:2061828	224	LBD15 "LOB domain-containing p	0.610	0.553	0.527	1.6e-31
TAIR|locus:2032931	165	ASL9 "ASYMMETRIC LEAVES 2-like	0.714	0.878	0.484	6.9e-31
TAIR|locus:2046817	311	LBD10 "LOB domain-containing p	0.507	0.331	0.601	1.4e-30
TAIR|locus:2089184	159	LBD25 "LOB domain-containing p	0.497	0.635	0.594	1.6e-29
TAIR|locus:2161982	186	LOB "LATERAL ORGAN BOUNDARIES"	0.497	0.543	0.603	4.4e-29
UNIPROTKB|Q32SG3	260	LBD6 "LOB domain-containing pr	0.522	0.407	0.575	9.1e-29

TAIR|locus:2026611 LBD1 "LOB domain-containing protein 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 489 (177.2 bits), Expect = 1.1e-46, P = 1.1e-46
 Identities = 107/179 (59%), Positives = 126/179 (70%)

Query:    34 AAPPP-----IVLSPCAACKSLRRRCDEKCVLAPYFPPTEPQNFIIVHRVFGASNIIKCL 88
             ++PPP     +VLSPCAACK LRRRC E+CVLAPYFPPT+P  F I HRVFGASNIIK L
Sbjct:    19 SSPPPSLSPRVVLSPCAACKILRRRCAERCVLAPYFPPTDPAKFTIAHRVFGASNIIKFL 78

Query:    89 QGLPECQRSDAVSSMVYEANARIRNPVHGCAGAISQLQKQVIKLQAELAKAQAETVSMQC 148
             Q LPE QR+DAV+SMVYEA ARIR+PV+GCAGAI  LQ+QV +LQA+LAKAQ E V+MQ 
Sbjct:    79 QELPESQRTDAVNSMVYEAEARIRDPVYGCAGAIYHLQRQVSELQAQLAKAQVEMVNMQF 138

Query:   149 QRDNLVALICKEMTTQFPQETMNRVLPQQQFNDDDATTCYLDDKDFAST----WDALWT 203
             QR NL+ LI   M  Q  QE  N       F  +D    +L+DK   ++    WD LWT
Sbjct:   139 QRSNLLELIYN-MDQQQKQEQDN-----MSFESNDLG--FLEDKSNTNSSMLWWDPLWT 189

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005739 "mitochondrion" evidence=IDA

TAIR|locus:2056578 LBD11 "LOB domain-containing protein 11" [Arabidopsis thaliana (taxid:3702)]

 Score = 460 (167.0 bits), Expect = 1.3e-43, P = 1.3e-43
 Identities = 92/133 (69%), Positives = 105/133 (78%)

Query:    37 PPIVLSPCAACKSLRRRCDEKCVLAPYFPPTEPQNFIIVHRVFGASNIIKCLQGLPECQR 96
             PP+VLSPCAACK LRRRC +KCVLAPYFPPT+P  F I HRVFGASNIIK LQ LPE QR
Sbjct:    49 PPVVLSPCAACKILRRRCADKCVLAPYFPPTDPAKFTIAHRVFGASNIIKFLQELPESQR 108

Query:    97 SDAVSSMVYEANARIRNPVHGCAGAISQLQKQVIKLQAELAKAQAETVSMQCQRDNLVAL 156
             +DAV+SMVYEA AR+R+PV+GCAGAI  LQ+QV +LQA+LAK Q E V MQ QR +L+ L
Sbjct:   109 TDAVNSMVYEAGARMRDPVYGCAGAIYHLQRQVSELQAQLAKTQVELVGMQLQRSSLLEL 168

Query:   157 ICK-EMTTQFPQE 168
             I   E T    QE
Sbjct:   169 IYNMEQTKLSVQE 181

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2197500 LBD4 "LOB domain-containing protein 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 396 (144.5 bits), Expect = 8.0e-37, P = 8.0e-37
 Identities = 85/164 (51%), Positives = 108/164 (65%)

Query:    42 SPCAACKSLRRRCDEKCVLAPYFPPTEPQNFIIVHRVFGASNIIKCLQGLPECQRSDAVS 101
             SPCAACK LRRRC + CV +PYFP  EPQ F  VHRVFGASN+ K LQ LP  QR DAVS
Sbjct:    12 SPCAACKLLRRRCAQDCVFSPYFPADEPQKFANVHRVFGASNVNKMLQELPIHQRGDAVS 71

Query:   102 SMVYEANARIRNPVHGCAGAISQLQKQVIKLQAELAKAQAETVSMQC-QRDNLVAL-ICK 159
             SMVYEANAR+R+PV+GC GAIS LQ+Q+  LQA+LA AQAE V ++  Q  N     +C 
Sbjct:    72 SMVYEANARVRDPVYGCVGAISSLQQQIDVLQAQLALAQAEVVHLRVRQSTNFPGHGLCP 131

Query:   160 EMTTQFPQETMNRVLPQQQFNDDDATTCYLDDKDFASTWDALWT 203
             +  +     +  +V PQ    D+     ++D  D AS  +++W+
Sbjct:   132 DSPSSSGSPSSKQVSPQ----DNKGMFSHMDIVDEASLGESMWS 171

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009855 "determination of bilateral symmetry" evidence=RCA

GO:0009944 "polarity specification of adaxial/abaxial axis" evidence=RCA

GO:0010014 "meristem initiation" evidence=RCA

GO:0010075 "regulation of meristem growth" evidence=RCA

TAIR|locus:2060842 ASL5 [Arabidopsis thaliana (taxid:3702)]

 Score = 371 (135.7 bits), Expect = 3.6e-34, P = 3.6e-34
 Identities = 69/110 (62%), Positives = 87/110 (79%)

Query:    42 SPCAACKSLRRRCDEKCVLAPYFPPTEPQNFIIVHRVFGASNIIKCLQGLPECQRSDAVS 101
             SPCA+CK LRRRC + C+ APYFPP +P  F IVH+VFGASN+ K LQ LP  QR+DAV+
Sbjct:     7 SPCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKVFGASNVSKMLQELPVHQRADAVN 66

Query:   102 SMVYEANARIRNPVHGCAGAISQLQKQVIKLQAELAKAQAETVSMQCQRD 151
             S+V+EANAR+R+PV+GC GAIS LQ QV +LQ +LA AQAE + +Q Q +
Sbjct:    67 SLVFEANARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQNE 116

GO:0005634 "nucleus" evidence=ISM

GO:0003677 "DNA binding" evidence=TAS

GO:0009965 "leaf morphogenesis" evidence=IMP

GO:0010016 "shoot system morphogenesis" evidence=IMP

TAIR|locus:2061828 LBD15 "LOB domain-containing protein 15" [Arabidopsis thaliana (taxid:3702)]

 Score = 346 (126.9 bits), Expect = 1.6e-31, P = 1.6e-31
 Identities = 67/127 (52%), Positives = 91/127 (71%)

Query:    33 LAAPPPIV--LSPCAACKSLRRRCDEKCVLAPYFPPTEPQNFIIVHRVFGASNIIKCLQG 90
             ++ PP  +  ++PCAACK LRRRC ++C  +PYF P EP  F  VH+VFGASN+ K L  
Sbjct:    33 MSGPPGTLNTITPCAACKLLRRRCAQECPFSPYFSPHEPHKFASVHKVFGASNVSKMLME 92

Query:    91 LPECQRSDAVSSMVYEANARIRNPVHGCAGAISQLQKQVIKLQAELAKAQAETVSMQCQR 150
             +PE QR+DA +S+VYEAN R+R+PV+GC GAIS LQ+QV  LQAEL   ++E +  + QR
Sbjct:    93 VPESQRADAANSLVYEANVRLRDPVYGCMGAISALQQQVQALQAELTAVRSEILKYK-QR 151

Query:   151 DNLVALI 157
             + +  LI
Sbjct:   152 EAVATLI 158

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0008150 "biological_process" evidence=ND

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2032931 ASL9 "ASYMMETRIC LEAVES 2-like 9" [Arabidopsis thaliana (taxid:3702)]

 Score = 340 (124.7 bits), Expect = 6.9e-31, P = 6.9e-31
 Identities = 77/159 (48%), Positives = 98/159 (61%)

Query:    41 LSPCAACKSLRRRC-DEKCVLAPYFPPTEPQNFIIVHRVFGASNIIKCLQGLPECQRSDA 99
             +SPCA CK LRR+C  + CV APYFP  EP  F IVH++FGASN+ K LQ L E  RSDA
Sbjct:    12 VSPCAGCKLLRRKCVKDSCVFAPYFPAKEPYKFAIVHKIFGASNVNKMLQELSENHRSDA 71

Query:   100 VSSMVYEANARIRNPVHGCAGAISQLQKQVIKLQAELAKAQAETVSMQCQRDNLVALICK 159
             V SMVYEANARI++PV+GC G IS L +Q+  LQ +LA AQAE + ++            
Sbjct:    72 VDSMVYEANARIQDPVYGCVGTISSLHRQLETLQTQLAFAQAELIHIRTLH--------- 122

Query:   160 EMTTQFPQETMNRV-LPQQQ--FNDDDATTCYLDDK-DF 194
              + T+ P  T + V  P  +  ++D D    Y DD  DF
Sbjct:   123 RIHTKPPPYTASTVTFPSNKDFYSDIDMAVAYTDDAGDF 161

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0010089 "xylem development" evidence=RCA

GO:0044036 "cell wall macromolecule metabolic process" evidence=RCA

TAIR|locus:2046817 LBD10 "LOB domain-containing protein 10" [Arabidopsis thaliana (taxid:3702)]

 Score = 337 (123.7 bits), Expect = 1.4e-30, P = 1.4e-30
 Identities = 62/103 (60%), Positives = 77/103 (74%)

Query:    42 SPCAACKSLRRRCDEKCVLAPYFPPTEPQNFIIVHRVFGASNIIKCLQGLPECQRSDAVS 101
             +PCAACK LRR+C ++CV APYFPPT PQ FI VHRVFGASN+ K L  LP  QR D V+
Sbjct:     4 TPCAACKLLRRKCTQECVFAPYFPPTNPQKFIFVHRVFGASNVTKILNDLPPDQREDTVN 63

Query:   102 SMVYEANARIRNPVHGCAGAISQLQKQVIKLQAELAKAQAETV 144
             S+ YEA ARIR+P++GC G IS LQ+ + K+Q +L  A+ E V
Sbjct:    64 SLFYEAEARIRDPIYGCVGLISFLQQYLKKIQQDLLTAKEELV 106

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2089184 LBD25 "LOB domain-containing protein 25" [Arabidopsis thaliana (taxid:3702)]

 Score = 327 (120.2 bits), Expect = 1.6e-29, P = 1.6e-29
 Identities = 60/101 (59%), Positives = 75/101 (74%)

Query:    42 SPCAACKSLRRRCDEKCVLAPYFPPTEPQNFIIVHRVFGASNIIKCLQGLPECQRSDAVS 101
             SPCAACK LRR+C   CV APYFPP EP  F  VHR+FGASN+ K L  +   QR DAV+
Sbjct:    38 SPCAACKFLRRKCTSDCVFAPYFPPEEPTKFANVHRIFGASNVSKILHEVAPHQREDAVN 97

Query:   102 SMVYEANARIRNPVHGCAGAISQLQKQVIKLQAELAKAQAE 142
             S+ YEA AR+++PV+GC GAIS LQ+QV++LQ EL +  A+
Sbjct:    98 SLAYEAEARLKDPVYGCVGAISVLQRQVLRLQRELEETNAD 138

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2161982 LOB "LATERAL ORGAN BOUNDARIES" [Arabidopsis thaliana (taxid:3702)]

 Score = 323 (118.8 bits), Expect = 4.4e-29, P = 4.4e-29
 Identities = 61/101 (60%), Positives = 74/101 (73%)

Query:    42 SPCAACKSLRRRCDEKCVLAPYFPPTEPQNFIIVHRVFGASNIIKCLQGLPECQRSDAVS 101
             SPCAACK LRR+C   C+ APYFPP EP  F  VH++FGASN+ K L  L   QR DAV+
Sbjct:    10 SPCAACKFLRRKCMPGCIFAPYFPPEEPHKFANVHKIFGASNVTKLLNELLPHQREDAVN 69

Query:   102 SMVYEANARIRNPVHGCAGAISQLQKQVIKLQAELAKAQAE 142
             S+ YEA AR+R+PV+GC GAIS LQ+QV +LQ EL  A A+
Sbjct:    70 SLAYEAEARVRDPVYGCVGAISYLQRQVHRLQKELDAANAD 110

GO:0005634 "nucleus" evidence=ISM

GO:0010199 "organ boundary specification between lateral organs and the meristem" evidence=IMP

UNIPROTKB|Q32SG3 LBD6 "LOB domain-containing protein 6" [Zea mays (taxid:4577)]

 Score = 320 (117.7 bits), Expect = 9.1e-29, P = 9.1e-29
 Identities = 61/106 (57%), Positives = 75/106 (70%)

Query:    42 SPCAACKSLRRRCDEKCVLAPYFPPTEPQNFIIVHRVFGASNIIKCLQGLPECQRSDAVS 101
             SPCAACK LRR+C   CV APYFPP  PQ F+ VHRVFGASN+ K L  L   QR DAV+
Sbjct:    32 SPCAACKFLRRKCQPDCVFAPYFPPDNPQKFVHVHRVFGASNVTKLLNELHPFQREDAVN 91

Query:   102 SMVYEANARIRNPVHGCAGAISQLQKQVIKLQAELAKAQAETVSMQ 147
             S+ YEA+ R+R+PV+GC G IS LQ  + +LQ +LA+A+ E    Q
Sbjct:    92 SLAYEADMRLRDPVYGCVGVISILQHNLRQLQQDLARAKYELSKYQ 137

GO:0005515 "protein binding" evidence=IPI

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9LQR0	LBD1_ARATH	No assigned EC number	0.6153	0.7733	0.8263	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	203
pfam03195	101	pfam03195, DUF260, Protein of unknown function DUF	8e-48

>gnl|CDD|190559 pfam03195, DUF260, Protein of unknown function DUF260

 Score =  151 bits (384), Expect = 8e-48
 Identities = 58/100 (58%), Positives = 75/100 (75%)

Query: 43  PCAACKSLRRRCDEKCVLAPYFPPTEPQNFIIVHRVFGASNIIKCLQGLPECQRSDAVSS 102
           PCAACK LRR+C   CVLAPYFP  +P  F  VH++FGASN+ K L+ LP  QR DA+ S
Sbjct: 1   PCAACKHLRRKCPPDCVLAPYFPAEQPARFANVHKLFGASNVTKLLKALPPEQRDDAMRS 60

Query: 103 MVYEANARIRNPVHGCAGAISQLQKQVIKLQAELAKAQAE 142
           ++YEA+AR R+PV+GC G I  LQ+Q+ +LQAELA  +A+
Sbjct: 61  LLYEADARARDPVYGCVGVIWSLQQQLEQLQAELALVKAQ 100

Length = 101

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	203
PF03195	101	DUF260: Protein of unknown function DUF260; InterP	100.0
COG3416	233	Uncharacterized protein conserved in bacteria [Fun	87.24
PF07106	169	TBPIP: Tat binding protein 1(TBP-1)-interacting pr	83.79

>PF03195 DUF260: Protein of unknown function DUF260; InterPro: IPR004883 The lateral organ boundaries (LOB) gene is expressed at the adaxial base of initiating lateral organs and encodes a plant-specific protein of unknown function

Probab=100.00  E-value=1.7e-50  Score=312.45  Aligned_cols=101  Identities=65%  Similarity=1.056  Sum_probs=99.5

Q ss_pred             CChhhHHhhhcCCCCCCCCcCCCCCCccchhhhhhhhchhhHHHHhhCCCCCCchhHHHHHHHHhhccccCCCCccHHHH
Q 045080           43 PCAACKSLRRRCDEKCVLAPYFPPTEPQNFIIVHRVFGASNIIKCLQGLPECQRSDAVSSMVYEANARIRNPVHGCAGAI  122 (203)
Q Consensus        43 ~CAACK~lRRrC~~~CilAPYFP~d~~~~F~~vhkvFG~sNI~kmLq~lp~~~R~dA~~SLvYEA~aR~rDPVyGCvG~I  122 (203)
                      +|||||||||||+++|+||||||++++++|.+||||||++||+|||+++++++|+++|+||+|||++|.+||||||+|+|
T Consensus         1 ~CaaCk~lRr~C~~~C~laPyFP~~~~~~F~~vhkvFG~sni~k~L~~~~~~~R~~a~~Sl~yEA~~R~~dPv~Gc~G~i   80 (101)
T PF03195_consen    1 PCAACKHLRRRCSPDCVLAPYFPADQPQRFANVHKVFGVSNISKMLQELPPEQREDAMRSLVYEANARARDPVYGCVGII   80 (101)
T ss_pred             CChHHHHHhCCCCCCCcCCCCCChhHHHHHHHHHHHHchhHHHHHHHhCCccchhhHHHHHHHHHHhhccCCCcchHHHH
Confidence            69999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q 045080          123 SQLQKQVIKLQAELAKAQAET  143 (203)
Q Consensus       123 ~~Lq~qi~~lq~eLa~aq~eL  143 (203)
                      +.|++||+.+++||+.+++||
T Consensus        81 ~~L~~ql~~~~~el~~~~~~l  101 (101)
T PF03195_consen   81 SQLQQQLQQLQAELALVRAQL  101 (101)
T ss_pred             HHHHHHHHHHHHHHHHHHccC
Confidence            999999999999999999875

The N-terminal one half of the LOB protein contains a conserved approximately 100-amino acid domain (the LOB domain) that is present in 42 other Arabidopsis thaliana proteins and in proteins from a variety of other plant species. Genes encoding LOB domain (LBD) proteins are expressed in a variety of temporal- and tissue-specific patterns, suggesting that they may function in diverse processes [] The LOB domain contains conserved blocks of amino acids that identify the LBD gene family. In particular, a conserved C-x(2)-C-x(6)-C-x(3)-C motif, which is defining feature of the LOB domain, is present in all LBD proteins. It is possible that this motif forms a new zinc finger [].

>COG3416 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=87.24  E-value=1.9  Score=38.57  Aligned_cols=67  Identities=13%  Similarity=0.158  Sum_probs=58.7

Q ss_pred             hHHHHhhCCCCCCchhHHHHHHHHhhccccCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 045080           83 NIIKCLQGLPECQRSDAVSSMVYEANARIRNPVHGCAGAISQLQKQVIKLQAELAKAQAETVSMQCQ  149 (203)
Q Consensus        83 NI~kmLq~lp~~~R~dA~~SLvYEA~aR~rDPVyGCvG~I~~Lq~qi~~lq~eLa~aq~eL~~~q~q  149 (203)
                      |+..-|+......|+..+..||-||-++.-|--|=-+-.|..+++-|+.++.+|+.++.+|+.+|.-
T Consensus        11 ~lf~rlk~a~~~~rD~~Ae~lI~~~~~~qP~a~Y~laQ~vliqE~ALk~a~~~i~eLe~ri~~lq~~   77 (233)
T COG3416          11 NLFHRLKKAEANERDPQAEALIAEAVAKQPDAAYYLAQRVLIQEQALKKASTQIKELEKRIAILQAG   77 (233)
T ss_pred             HHHHHHhhcccCCCChHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            4445566777789999999999999999999999999999999999999999999999999887753

>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences

Probab=83.79  E-value=1.3  Score=36.26  Aligned_cols=82  Identities=21%  Similarity=0.253  Sum_probs=55.9

Q ss_pred             cchhhhhhhhchhhHHHHhhCCCCCCc---hhHHHHHHHHhhccccCCCCcc-----HHHHHHHHHHHHHHHHHHHHHHH
Q 045080           70 QNFIIVHRVFGASNIIKCLQGLPECQR---SDAVSSMVYEANARIRNPVHGC-----AGAISQLQKQVIKLQAELAKAQA  141 (203)
Q Consensus        70 ~~F~~vhkvFG~sNI~kmLq~lp~~~R---~dA~~SLvYEA~aR~rDPVyGC-----vG~I~~Lq~qi~~lq~eLa~aq~  141 (203)
                      .-|.|+|.-||-..|.|.|..|-...+   ...=...||=++--.-+-+..-     =.-|..|+.++..++.++..+++
T Consensus        21 di~~nL~~~~~K~~v~k~Ld~L~~~g~i~~K~~GKqkiY~~~Q~~~~~~s~eel~~ld~ei~~L~~el~~l~~~~k~l~~  100 (169)
T PF07106_consen   21 DIFDNLHNKVGKTAVQKALDSLVEEGKIVEKEYGKQKIYFANQDELEVPSPEELAELDAEIKELREELAELKKEVKSLEA  100 (169)
T ss_pred             HHHHHHHhhccHHHHHHHHHHHHhCCCeeeeeecceEEEeeCccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            468999999999999999999866543   2344556776665544322221     23467777777777777777777


Q ss_pred             HHHHhhhcch
Q 045080          142 ETVSMQCQRD  151 (203)
Q Consensus       142 eL~~~q~q~~  151 (203)
                      ||..+..+..
T Consensus       101 eL~~L~~~~t  110 (169)
T PF07106_consen  101 ELASLSSEPT  110 (169)
T ss_pred             HHHHHhcCCC
Confidence            7777665553

TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	203
4dzn_A	33	Coiled-coil peptide CC-PIL; de novo protein; HET:	82.26

>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B

Probab=82.26  E-value=1.8  Score=27.02  Aligned_cols=28  Identities=25%  Similarity=0.502  Sum_probs=24.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 045080          120 GAISQLQKQVIKLQAELAKAQAETVSMQ  147 (203)
Q Consensus       120 G~I~~Lq~qi~~lq~eLa~aq~eL~~~q  147 (203)
                      |.|..|+++|..|+.|++.++-|++.++
T Consensus         2 geiaalkqeiaalkkeiaalkfeiaalk   29 (33)
T 4dzn_A            2 GEIAALKQEIAALKKEIAALKFEIAALK   29 (33)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6788999999999999999998887653

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	203
d1hcia4	114	alpha-actinin {Human (Homo sapiens) [TaxId: 9606]}	81.34

>d1hcia4 a.7.1.1 (A:633-746) alpha-actinin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: Spectrin repeat
family: Spectrin repeat
domain: alpha-actinin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.34  E-value=0.79  Score=31.40  Aligned_cols=59  Identities=8%  Similarity=0.157  Sum_probs=51.5

Q ss_pred             hhHHHHHHHHhhccccCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHH
Q 045080           97 SDAVSSMVYEANARIRNPVHGCAGAISQLQKQVIKLQAELAKAQAETVSMQCQRDNLVA  155 (203)
Q Consensus        97 ~dA~~SLvYEA~aR~rDPVyGCvG~I~~Lq~qi~~lq~eLa~aq~eL~~~q~q~~n~~~  155 (203)
                      .+-+.+=+-|+..-+.+++||-.+.|..+.++.+.++.+|..-+.++..+......|+.
T Consensus        14 a~~~~~Wi~e~~~~l~~~~~~~~~~ve~~l~~h~~~e~el~~~~~~i~~l~~~g~~L~~   72 (114)
T d1hcia4          14 ANAIGPWIQNKMEEIARSSIQITGALEDQMNQLKQYEHNIINYKNNIDKLEGDHQLIQE   72 (114)
T ss_dssp             HHHHHHHHHHHHHHHHSCSCTTTTSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34566677888888899999999999999999999999999999999999888877765