Citrus Sinensis ID: 045087

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------
Protein Sequence
PQSRITDIKQRMQQLEHTDSEIIDAIKTFEAEAGISSSSKSRDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPYTCYADQILDIIIKFLMPSSRLSEIKDKNYEMKKIILHEYLMTKRYLIVIDDV
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccHHHHHHHHHccccccEEEEEEccccccHHHHHHHHcccccccccccEEEEEEEcccccHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHcccccEEEEEEcc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHHHcHHcccccccccccccccccccccEccccccHHHHHHHHHccccccEEEEEEccccccHHHHHHHHHccccHHccccEEEEEEEcccccHHHHHHHHHHHHcccccccHHccHHHHHHHHHHHHHHccccEEEEEEcc
Coil and Loop (DISEMBL)
PQSRITDIKQRMQQLEHTDSEIIDAIKTFEaeagissssksrdtvgLDDRMEELLDLLiegppqlsaVTILDSIGLDKTAFAAEAYSSNYMKHYFdchawvqepytcyADQILDIIIKFlmpssrlseikdkNYEMKKIILHEYLMTKRYLIVIDDV
Flexible Loop (DISEMBL)
PQSRITDIKQRMQQLEHTDSEIIDAIKTfeaeagissssksrdtvgLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPYTCYADQILDIIIKFLMPSSRLSEIKDKNYEMKKIIlheylmtkrylividdv
Low Complexity Region (SEG)
PQSRITDIKQRMQQLEHTDSEIIDAIKTFEAEAGISSSSKSRDTVGlddrmeelldllieGPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPYTCYADQILDIIIKFLMPSSRLSEIKDKNYEMKKIILHEYLMTKRYLIVIDDV
Disordered region (IsUnstruct)
****************************************************ELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPYTCYADQILDIIIKFLMPSSRLSEIKDKNYEMKKIILHEYLMTKRYLIVI***
Disordered Region (DISOPRED)
*QSRITDIKQRM*****************************RDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPYTCYADQILDIIIKFLM*************EMKKIILHEYLMTKRYLIVIDDV
Disordered Region (DISEMBL)
PQSRITDIKQRMQQLEHTDSEIIDAIKTFEAE************VGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPYTCYADQILDIIIKFLMPSSRLSEIKDKNYEMKKIILHEYLMTKRYLIVIDDV
Disordered Region (DISPRO)
PQSRITDIKQRMQQLEHTDS*IID******************DTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPYTCYADQILDIIIKFLMPSSRLSEIKDKNYEMKKIILHEYLMTKRYLIVIDDV
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
PQSRITDIKQRMQQLEHTDSEIIDAIKTFEAEAGISSSSKSRDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPYTCYADQILDIIIKFLMPSSRLSEIKDKNYEMKKIILHEYLMTKRYLIVIDDV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	157	2.2.26 [Sep-21-2011]
Q9STE5	847	Putative disease resistan	yes	no	0.840	0.155	0.278	3e-07
Q9XIF0	906	Putative disease resistan	no	no	0.942	0.163	0.298	9e-07
Q9SX38	857	Putative disease resistan	no	no	0.949	0.173	0.238	5e-06
Q9FJB5	901	Disease resistance RPP8-l	no	no	0.949	0.165	0.279	8e-06
Q39214	926	Disease resistance protei	no	no	0.974	0.165	0.260	8e-06
P0C8S1	906	Probable disease resistan	no	no	0.751	0.130	0.297	2e-05
Q38834	852	Disease resistance RPP13-	no	no	0.566	0.104	0.340	2e-05
Q9FJK8	908	Probable disease resistan	no	no	0.936	0.161	0.272	4e-05
Q9M667	835	Disease resistance protei	no	no	0.719	0.135	0.322	5e-05
Q6L406	1326	Putative late blight resi	N/A	no	0.923	0.109	0.291	0.0001

>sp|Q9STE5|R13L2_ARATH Putative disease resistance RPP13-like protein 2 OS=Arabidopsis thaliana GN=RPP13L2 PE=3 SV=1

 Score = 54.3 bits (129), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 41/147 (27%), Positives = 70/147 (47%), Gaps = 15/147 (10%)

Query: 25  AIKTFEAEAGISSSSKSRDT------------VGLDDRMEELLDLLIE--GPPQLSAVTI 70
            I  F     ++S+S+ R+             VGL D  + LL  L++  G  ++  ++I
Sbjct: 130 GIGNFNEHRVVASTSRVREVRRARSDDQEERVVGLTDDAKVLLTKLLDDDGDNKIYMISI 189

Query: 71  LDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPYTCYADQILDIIIKFLMPSSRLSEIK 130
               GL KT+ A + ++S+ +K  F+   W      C    IL  II  L  +S   E++
Sbjct: 190 FGMEGLGKTSLARKLFNSSDVKESFEYRVWTNVSGECNTRDILMRIISSLEETSE-GELE 248

Query: 131 DKNYEMKKIILHEYLMTKRYLIVIDDV 157
               +  ++ LH+ L  KRYL+V+DD+
Sbjct: 249 KMAQQELEVYLHDILQEKRYLVVVDDI 275

Potential disease resistance protein.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9XIF0|DRL13_ARATH Putative disease resistance protein At1g59780 OS=Arabidopsis thaliana GN=At1g59780 PE=2 SV=1

 Score = 52.8 bits (125), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 48/161 (29%), Positives = 79/161 (49%), Gaps = 13/161 (8%)

Query: 4   RITDIKQRMQQLEHTDSEIIDAI-------KTFEAEAGISSSSKSRDTVGLDDRMEELLD 56
           RI+ + Q MQ L    S+I+D +       +  E     SS S+S + VGL+  +E+L++
Sbjct: 115 RISKVIQVMQNL-GIKSDIMDGVDSHAQLERKRELRHTFSSESES-NLVGLEKNVEKLVE 172

Query: 57  LLIEGPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPYTCYADQILDII 116
            L+ G      V+I    GL KT  A + +  + +K +FD  AWV          +   I
Sbjct: 173 ELV-GNDSSHGVSITGLGGLGKTTLARQIFDHDKVKSHFDGLAWVCVSQEFTRKDVWKTI 231

Query: 117 IKFLMPSSRLSEIKDKNYEMKKIILHEYLMTKRYLIVIDDV 157
           +  L P  + S++ + + + K   L + L TK+ LIV DD+
Sbjct: 232 LGNLSPKYKDSDLPEDDIQKK---LFQLLETKKALIVFDDL 269

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SX38|DRL4_ARATH Putative disease resistance protein At1g50180 OS=Arabidopsis thaliana GN=At1g50180 PE=3 SV=2

 Score = 50.1 bits (118), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 40/168 (23%), Positives = 77/168 (45%), Gaps = 19/168 (11%)

Query: 6   TDIKQRMQQLEHTDSEIID-AIKTFEAEAGISSSSKSRDT------------VGLDDRME 52
           ++I++   +L    + ++D  IK      G+S S   R+             VGL+  +E
Sbjct: 113 SEIREITSRLSKIAASMLDFGIKESMGREGLSLSDSLREQRQSFPYVVEHNLVGLEQSLE 172

Query: 53  ELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPYTCYADQI 112
           +L++ L+ G  +L   +I    GL KT  A + +  + ++ +FD  AWV     C    +
Sbjct: 173 KLVNDLVSGGEKLRVTSICGMGGLGKTTLAKQIFHHHKVRRHFDRFAWVYVSQDCRRRHV 232

Query: 113 LDII---IKFLMPSSRLSEIKDKNYEMKKIILHEYLMTKRYLIVIDDV 157
              I   + +   + R+  ++D+    +   LH +L   + LIV+DD+
Sbjct: 233 WQDIFLNLSYKDENQRILSLRDEQLGEE---LHRFLKRNKCLIVLDDI 277

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FJB5|RP8L3_ARATH Disease resistance RPP8-like protein 3 OS=Arabidopsis thaliana GN=RPP8L3 PE=2 SV=1

 Score = 49.7 bits (117), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 45/161 (27%), Positives = 75/161 (46%), Gaps = 12/161 (7%)

Query: 4   RITDIKQRMQQLEHTDSEIIDAIKTF-------EAEAGISSSSKSRDTVGLDDRMEELLD 56
           RI+ +   MQ L     +IID  ++        E      +SS+S D VG++  +EEL+ 
Sbjct: 118 RISKVIGEMQSLG-IQQQIIDGGRSLSLQDIQREIRQTFPNSSES-DLVGVEQSVEELVG 175

Query: 57  LLIEGPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPYTCYADQILDII 116
            ++E    +  V+I    G+ KT  A + +  + ++ +FD  AWV          +   I
Sbjct: 176 PMVE-IDNIQVVSISGMGGIGKTTLARQIFHHDLVRRHFDGFAWVCVSQQFTQKHVWQRI 234

Query: 117 IKFLMPSSRLSEIKDKNYEMKKIILHEYLMTKRYLIVIDDV 157
           ++ L P     EI   +    +  L + L T RYL+V+DDV
Sbjct: 235 LQELRPHD--GEILQMDEYTIQGKLFQLLETGRYLVVLDDV 273

Disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q39214|RPM1_ARATH Disease resistance protein RPM1 OS=Arabidopsis thaliana GN=RPM1 PE=1 SV=1

 Score = 49.7 bits (117), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 42/161 (26%), Positives = 74/161 (45%), Gaps = 8/161 (4%)

Query: 5   ITDIKQRMQQLEHTDSEIIDAIKTFEAE--AGISSSS---KSRDTVGLDDRMEELLDLLI 59
           I+D  +R    E+  + ++  I   +A+    IS SS        VG+D    +L+  L+
Sbjct: 128 ISDSMKRYYHSENYQAALLPPIDDGDAKWVNNISESSLFFSENSLVGIDAPKGKLIGRLL 187

Query: 60  EGPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPYTCYADQILDIIIKF 119
              PQ   V ++   G  KT  +A  + S  ++ +F+ +AWV    +   + +   +IK 
Sbjct: 188 SPEPQRIVVAVVGMGGSGKTTLSANIFKSQSVRRHFESYAWVTISKSYVIEDVFRTMIKE 247

Query: 120 LMPSSRL---SEIKDKNYEMKKIILHEYLMTKRYLIVIDDV 157
               +     +E+    Y      L EYL +KRY++V+DDV
Sbjct: 248 FYKEADTQIPAELYSLGYRELVEKLVEYLQSKRYIVVLDDV 288

Disease resistance (R) protein that specifically recognizes the AvrRpm1 type III effector avirulence protein from Pseudomonas syringae. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. Acts via its interaction with RIN4, and probably triggers the plant resistance when RIN4 is phosphorylated by AvrRpm1. It is then degraded at the onset of the hypersensitive response.

Arabidopsis thaliana (taxid: 3702)

>sp|P0C8S1|RP8L2_ARATH Probable disease resistance RPP8-like protein 2 OS=Arabidopsis thaliana GN=RPP8L2 PE=1 SV=1

 Score = 48.5 bits (114), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 36/121 (29%), Positives = 60/121 (49%), Gaps = 3/121 (2%)

Query: 37  SSSKSRDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFD 96
           S +   D VGLD  +EEL+D L+E    +  V++    G+ KT  A + +  + ++ +FD
Sbjct: 156 SRNSESDLVGLDQSVEELVDHLVEN-DSVQVVSVSGMGGIGKTTLARQVFHHDIVRRHFD 214

Query: 97  CHAWVQEPYTCYADQILDIIIKFLMPSSRLSEIKDKNYEMKKIILHEYLMTKRYLIVIDD 156
             +WV          +   I++ L P      I+   Y ++   L E L + RYL+V+DD
Sbjct: 215 GFSWVCVSQQFTRKDVWQRILQDLRPYDE-GIIQMDEYTLQG-ELFELLESGRYLLVLDD 272

Query: 157 V 157
           V
Sbjct: 273 V 273

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q38834|R13L4_ARATH Disease resistance RPP13-like protein 4 OS=Arabidopsis thaliana GN=RPP13L4 PE=2 SV=2

 Score = 48.5 bits (114), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 50/94 (53%), Gaps = 5/94 (5%)

Query: 64  QLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPYTCYADQILDIIIKFLMPS 123
           QL  +  +   GL KT  A E ++   ++H F+   WV    T   +QI+  I++ L  +
Sbjct: 181 QLLIMAFVGMGGLGKTTIAQEVFNDKEIEHRFERRIWVSVSQTFTEEQIMRSILRNLGDA 240

Query: 124 SRLSEIKDKNYEMKKIILHEYLMTKRYLIVIDDV 157
           S   +I      ++KI   +YL+ KRYLIV+DDV
Sbjct: 241 SVGDDI---GTLLRKI--QQYLLGKRYLIVMDDV 269

Disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FJK8|RP8L4_ARATH Probable disease resistance RPP8-like protein 4 OS=Arabidopsis thaliana GN=RPP8L4 PE=2 SV=1

 Score = 47.0 bits (110), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 45/165 (27%), Positives = 76/165 (46%), Gaps = 18/165 (10%)

Query: 4   RITDIKQRMQQLEHTDSEIIDAIKTF----------EAEAGISSSSKSRDTVGLDDRMEE 53
           RI+D+   MQ       +IID +++           E       SS+S D VG++  +EE
Sbjct: 118 RISDVIGEMQSF--GIQQIIDGVRSLSLQERQRVQREIRQTYPDSSES-DLVGVEQSVEE 174

Query: 54  LLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPYTCYADQIL 113
           L+  L+E       V+I    G+ KT  A + +  + ++ +FD  AWV          + 
Sbjct: 175 LVGHLVENDI-YQVVSIAGMGGIGKTTLARQVFHHDLVRRHFDGFAWVCVSQQFTLKHVW 233

Query: 114 DIIIKFLMP-SSRLSEIKDKNYEMKKIILHEYLMTKRYLIVIDDV 157
             I++ L P    + ++ +   + K   L + L T RYL+V+DDV
Sbjct: 234 QRILQELQPHDGNILQMDESALQPK---LFQLLETGRYLLVLDDV 275

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M667|RPP13_ARATH Disease resistance protein RPP13 OS=Arabidopsis thaliana GN=RPP13 PE=2 SV=2

 Score = 47.0 bits (110), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 38/118 (32%), Positives = 61/118 (51%), Gaps = 5/118 (4%)

Query: 44  TVGLDDRMEELLDLLIE-GPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAW-- 100
            VGL+D  + LL+ L++        ++I    GL KTA A + Y+S  +K  F+  AW  
Sbjct: 163 VVGLEDDAKILLEKLLDYEEKNRFIISIFGMGGLGKTALARKLYNSRDVKERFEYRAWTY 222

Query: 101 VQEPYTCYADQILDIIIKFLMPSS-RLSEIKDKNYEMKKIILHEYLMTKRYLIVIDDV 157
           V + Y    D ++ II    M S   L +I+    E  ++ L+  L  K+YL+V+DD+
Sbjct: 223 VSQEYKT-GDILMRIIRSLGMTSGEELEKIRKFAEEELEVYLYGLLEGKKYLVVVDDI 279

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. In contrast to other resistance proteins, it works independently of ESD1 and NSD1 proteins and does not require the accumulation of salicylic acid, suggesting the existence of an independent signaling pathway. The specificity to avirulence proteins differs in the different cultivars.

Arabidopsis thaliana (taxid: 3702)

>sp|Q6L406|R1B19_SOLDE Putative late blight resistance protein homolog R1B-19 OS=Solanum demissum GN=R1B-19 PE=5 SV=2

 Score = 45.8 bits (107), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 46/158 (29%), Positives = 72/158 (45%), Gaps = 13/158 (8%)

Query: 5   ITDIKQRMQQLEHTDSEIIDAIKTFEAEAGISSSSKSR---DTVGLDDRMEELLDLLIEG 61
           IT IK ++Q+    D    D +KT         +   R   + VG +D +E L   L+ G
Sbjct: 504 ITCIKAKIQEKNTVD----DTMKTVIVRTSSKLARTPRMKEEIVGFEDIIENLRKKLLNG 559

Query: 62  PPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHA--WVQEPYTCYADQILDIIIKF 119
                 ++I    GL KT  A   YS   +   FD  A   V + Y+ Y D +L ++   
Sbjct: 560 TKGQDVISIHGMPGLGKTTLANRLYSDRSVVSQFDICAQCCVSQVYS-YKDLLLSLLCDT 618

Query: 120 LMPSSRLSEIKDKNYEMKKIILHEYLMTKRYLIVIDDV 157
           +   S   E+ D   E+   +L + L+ +RYLI++DDV
Sbjct: 619 IGEESERRELPDN--ELAD-MLRKTLLPRRYLILVDDV 653

Confers resistance to late blight (Phytophthora infestans) races carrying the avirulence gene Avr1. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth.

Solanum demissum (taxid: 50514)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	157
224064832	920	cc-nbs-lrr resistance protein [Populus t	0.732	0.125	0.347	4e-13
147856116	1894	hypothetical protein VITISV_006820 [Viti	0.980	0.081	0.279	9e-11
357154479	1077	PREDICTED: disease resistance protein RP	0.955	0.139	0.339	1e-10
115486357	528	Os11g0633500 [Oryza sativa Japonica Grou	0.719	0.214	0.355	1e-10
297745275	1136	unnamed protein product [Vitis vinifera]	0.713	0.098	0.379	1e-10
125555508	773	hypothetical protein OsI_23143 [Oryza sa	0.719	0.146	0.355	2e-10
125576117	773	hypothetical protein OsJ_32864 [Oryza sa	0.719	0.146	0.355	2e-10
242084262	1037	hypothetical protein SORBIDRAFT_08g02188	0.732	0.110	0.390	3e-10
359489796	795	PREDICTED: disease susceptibility protei	0.713	0.140	0.362	4e-10
297745279	920	unnamed protein product [Vitis vinifera]	0.713	0.121	0.362	8e-10

>gi|224064832|ref|XP_002301573.1| cc-nbs-lrr resistance protein [Populus trichocarpa] gi|222843299|gb|EEE80846.1| cc-nbs-lrr resistance protein [Populus trichocarpa]

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 41/118 (34%), Positives = 67/118 (56%), Gaps = 3/118 (2%)

Query: 43  DTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQ 102
           D VG+++  E+LL  L+E  P+ + ++I+   GL KT      Y+++ +K  FDC AW+ 
Sbjct: 165 DIVGMEESTEQLLGWLMEDEPRRTVISIVGMGGLGKTTLVTRVYNNHIIKRGFDCWAWIS 224

Query: 103 EPYTCYADQILDIIIKFLMPSSRL---SEIKDKNYEMKKIILHEYLMTKRYLIVIDDV 157
              TC   ++L  IIK L  ++ +   + +   NY     +L +YL  KRY+IV+DDV
Sbjct: 225 VSQTCGTGELLRSIIKELFGATSVVIPNNVGSMNYRQLVGMLIDYLHQKRYVIVLDDV 282

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147856116|emb|CAN80288.1| hypothetical protein VITISV_006820 [Vitis vinifera]

 Score = 71.6 bits (174), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 48/172 (27%), Positives = 84/172 (48%), Gaps = 18/172 (10%)

Query: 3   SRITDIKQRMQQLEHTDSEIIDAIKTFEAEAGISSSS--------------KSRDTVGLD 48
           S++ D+K ++ +L+   S     I +FE  +G  S +              +  + VG++
Sbjct: 101 SKVQDLKLKVGKLKEA-SSTYGFISSFELGSGSCSGTSVPWHDPGVTSLFIEDAEIVGIE 159

Query: 49  DRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPYTCY 108
               EL+  L+EG P+ + ++++   GL KT  A + Y +  M  +FDC AW+    +  
Sbjct: 160 SHKGELIKWLVEGAPERTVISVVGMGGLGKTTLAKKVYDNKRMVEHFDCRAWITVSQSFK 219

Query: 109 ADQILDIIIK--FLMPSSRLSEIKDKNYEMKKII-LHEYLMTKRYLIVIDDV 157
            +++L  +IK  +L     + +  D   EM  I  L EYL  KRY++V  DV
Sbjct: 220 MEEVLRNVIKQFYLARKESIPDGTDAMDEMSLITRLREYLEDKRYVVVFXDV 271

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357154479|ref|XP_003576797.1| PREDICTED: disease resistance protein RPP13-like [Brachypodium distachyon]

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 56/165 (33%), Positives = 81/165 (49%), Gaps = 15/165 (9%)

Query: 5   ITDIKQRMQQLEHTDSEIIDAIKTFEAEAGISSSSKS----RDTVGLDDRMEELLDLL-- 58
           I  +K R++        I  A  T+   A    SSK+    R+ VG+   +EELL LL  
Sbjct: 127 IHKLKSRLKDAHQRVISIPIAAPTYHEFASPPPSSKTCRVARNPVGIGKPVEELLSLLDE 186

Query: 59  IEGPP-QLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPYTCYAD-----QI 112
           +EG P QL  ++++   GL KT  A   Y S +    FDC AWV    +   +     +I
Sbjct: 187 VEGEPEQLRVISVVGFGGLGKTTVARAVYDSPHAAERFDCRAWVAAGRSTETNGDGVGEI 246

Query: 113 LDIIIKFLMPSSRLSEIKDKNYEMKKIILHEYLMTKRYLIVIDDV 157
           L  I++ ++P   +    D+  E    +L EYL  KRYLIVIDD+
Sbjct: 247 LRDILRQVLPEDGMDVGDDQRLEA---LLTEYLKHKRYLIVIDDI 288

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115486357|ref|NP_001068322.1| Os11g0633500 [Oryza sativa Japonica Group] gi|108864604|gb|ABA94849.2| NB-ARC domain containing protein, expressed [Oryza sativa Japonica Group] gi|108864605|gb|ABG22560.1| NB-ARC domain containing protein, expressed [Oryza sativa Japonica Group] gi|113645544|dbj|BAF28685.1| Os11g0633500 [Oryza sativa Japonica Group] gi|215694679|dbj|BAG89870.1| unnamed protein product [Oryza sativa Japonica Group]

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 42/118 (35%), Positives = 68/118 (57%), Gaps = 5/118 (4%)

Query: 43  DTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQ 102
           D VG D+   E+++ L+E   +LS V+I+   G  KT  A + Y+S  ++++FD  AWV 
Sbjct: 168 DVVGFDNEYNEIVEKLVEQENELSVVSIVAMGGAGKTTLARKIYNSTRIRNHFDTTAWVT 227

Query: 103 EPYTCYADQILDIIIKFLMPSSRLSEIKDKNYEM---KKIILHEYLMTKRYLIVIDDV 157
                    +L  I++ +MP+   S   D+  E+   KKI  HE+L+ KRY++V+DDV
Sbjct: 228 VSQKFKGIDLLKDIMRQIMPNKLESREIDQMQELEVGKKI--HEFLLNKRYVVVLDDV 283

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297745275|emb|CBI40355.3| unnamed protein product [Vitis vinifera]

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 44/116 (37%), Positives = 67/116 (57%), Gaps = 4/116 (3%)

Query: 43  DTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQ 102
           D VG++D +EE+  +L++   + S V+I+   GL KT FA + Y+   ++ +FDC AWV 
Sbjct: 167 DVVGIEDGIEEVKQMLMKEETRRSVVSIVGMGGLGKTTFAKKVYNQRDVQQHFDCKAWVY 226

Query: 103 EPYTCYADQI-LDIIIKFLMPSSRLSEIKDKNYEMKKIILHEYLMTKRYLIVIDDV 157
                 A +I LDI   F+  S +  E+++     K   L EYL  K+YLIV+DDV
Sbjct: 227 VSQEFRAREILLDIANHFMSLSEKEKEMRESELGEK---LCEYLKEKKYLIVMDDV 279

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|125555508|gb|EAZ01114.1| hypothetical protein OsI_23143 [Oryza sativa Indica Group]

 Score = 70.9 bits (172), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 42/118 (35%), Positives = 68/118 (57%), Gaps = 5/118 (4%)

Query: 43  DTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQ 102
           D VG D+   E+++ L+E   +LS V+I+   G  KT  A + Y+S  ++++FD  AWV 
Sbjct: 168 DVVGFDNEYNEIVEKLVEQENELSVVSIVAMGGAGKTTLARKIYNSTRIRNHFDTTAWVT 227

Query: 103 EPYTCYADQILDIIIKFLMPSSRLSEIKDKNYEM---KKIILHEYLMTKRYLIVIDDV 157
                    +L  I++ +MP+   S   D+  E+   KKI  HE+L+ KRY++V+DDV
Sbjct: 228 VSQKFKGIDLLKDIMRQIMPNKLESREIDQMQELEVGKKI--HEFLLNKRYVVVLDDV 283

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|125576117|gb|EAZ17339.1| hypothetical protein OsJ_32864 [Oryza sativa Japonica Group]

 Score = 70.9 bits (172), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 42/118 (35%), Positives = 68/118 (57%), Gaps = 5/118 (4%)

Query: 43  DTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQ 102
           D VG D+   E+++ L+E   +LS V+I+   G  KT  A + Y+S  ++++FD  AWV 
Sbjct: 168 DVVGFDNEYNEIVEKLVEQENELSVVSIVAMGGAGKTTLARKIYNSTRIRNHFDTTAWVT 227

Query: 103 EPYTCYADQILDIIIKFLMPSSRLSEIKDKNYEM---KKIILHEYLMTKRYLIVIDDV 157
                    +L  I++ +MP+   S   D+  E+   KKI  HE+L+ KRY++V+DDV
Sbjct: 228 VSQKFKGIDLLKDIMRQIMPNKLESREIDQMQELEVGKKI--HEFLLNKRYVVVLDDV 283

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242084262|ref|XP_002442556.1| hypothetical protein SORBIDRAFT_08g021880 [Sorghum bicolor] gi|241943249|gb|EES16394.1| hypothetical protein SORBIDRAFT_08g021880 [Sorghum bicolor]

 Score = 70.1 bits (170), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 50/128 (39%), Positives = 68/128 (53%), Gaps = 13/128 (10%)

Query: 41  SRDTVGLDDRMEELLDLL--IEG-PPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDC 97
           +R+ VG+D  MEELL LL  ++G P QL  ++I+   GL KT  A   Y S + K  F C
Sbjct: 190 TRNPVGIDKPMEELLSLLHEVDGEPQQLRVISIVGFGGLGKTTLARAVYDSPHAKETFHC 249

Query: 98  HAWVQ-----EPYTCYADQI---LDIIIKFLMPSSRLSEIKDKNYEMKKIILHEYLMTKR 149
            AWV       P    + +I   L  I++ ++P   +    D N+   +  L EYL  KR
Sbjct: 250 RAWVSTAGATSPEISISQRIKAVLRDILQQVVPKDTMEMDVDSNH--LEASLKEYLSDKR 307

Query: 150 YLIVIDDV 157
           YLIVIDDV
Sbjct: 308 YLIVIDDV 315

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359489796|ref|XP_003633980.1| PREDICTED: disease susceptibility protein LOV1-like [Vitis vinifera]

 Score = 69.3 bits (168), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 42/116 (36%), Positives = 66/116 (56%), Gaps = 4/116 (3%)

Query: 43  DTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQ 102
           D VG++D  EE+  +L++   + S V+I+   GL KT  A + Y+   ++ +FDC AWV 
Sbjct: 167 DVVGIEDGTEEVKQMLMKEETRRSVVSIVGMGGLGKTTLAKKVYNQRDVQQHFDCKAWVY 226

Query: 103 EPYTCYADQI-LDIIIKFLMPSSRLSEIKDKNYEMKKIILHEYLMTKRYLIVIDDV 157
                 A +I LDI  +F+  S +  E+++     K   L EYL  K+YL+V+DDV
Sbjct: 227 VSQEFRAREILLDIANRFMSLSEKEKEMRESELGEK---LCEYLKEKKYLVVMDDV 279

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297745279|emb|CBI40359.3| unnamed protein product [Vitis vinifera]

 Score = 68.6 bits (166), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 42/116 (36%), Positives = 66/116 (56%), Gaps = 4/116 (3%)

Query: 43  DTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQ 102
           D VG++D  EE+  +L++   + S V+I+   GL KT  A + Y+   ++ +FDC AWV 
Sbjct: 167 DVVGIEDGTEEVKQMLMKEETRRSVVSIVGMGGLGKTTLAKKVYNQRDVQQHFDCKAWVY 226

Query: 103 EPYTCYADQI-LDIIIKFLMPSSRLSEIKDKNYEMKKIILHEYLMTKRYLIVIDDV 157
                 A +I LDI  +F+  S +  E+++     K   L EYL  K+YL+V+DDV
Sbjct: 227 VSQEFRAREILLDIANRFMSLSEKEKEMRESELGEK---LCEYLKEKKYLVVMDDV 279

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	157
TAIR|locus:2102857	847	AT3G46710 [Arabidopsis thalian	0.611	0.113	0.298	8.5e-07
TAIR|locus:504956483	847	AT3G46730 [Arabidopsis thalian	0.560	0.103	0.326	6.1e-06
TAIR|locus:2077572	926	RPM1 "RESISTANCE TO P. SYRINGA	0.968	0.164	0.240	8.7e-06
TAIR|locus:2078012	852	ZAR1 "HOPZ-ACTIVATED RESISTANC	0.566	0.104	0.340	1e-05
TAIR|locus:2075170	835	RPP13 "RECOGNITION OF PERONOSP	0.566	0.106	0.333	3.3e-05
UNIPROTKB|Q84UB1	928	Pi-ta "Pi-ta protein" [Oryza s	0.605	0.102	0.297	0.00013
UNIPROTKB|Q9AY26	928	Pi-ta "Pi-ta protein" [Oryza s	0.605	0.102	0.297	0.00013

TAIR|locus:2102857 AT3G46710 [Arabidopsis thaliana (taxid:3702)]

 Score = 125 (49.1 bits), Expect = 8.5e-07, P = 8.5e-07
 Identities = 29/97 (29%), Positives = 50/97 (51%)

Query:    61 GPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPYTCYADQILDIIIKFL 120
             G  ++  ++I    GL KT+ A + ++S+ +K  F+   W      C    IL  II  L
Sbjct:   180 GDNKIYMISIFGMEGLGKTSLARKLFNSSDVKESFEYRVWTNVSGECNTRDILMRIISSL 239

Query:   121 MPSSRLSEIKDKNYEMKKIILHEYLMTKRYLIVIDDV 157
               +S   E++    +  ++ LH+ L  KRYL+V+DD+
Sbjct:   240 EETSE-GELEKMAQQELEVYLHDILQEKRYLVVVDDI 275

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:504956483 AT3G46730 [Arabidopsis thaliana (taxid:3702)]

 Score = 117 (46.2 bits), Expect = 6.1e-06, P = 6.1e-06
 Identities = 31/95 (32%), Positives = 54/95 (56%)

Query:    68 VTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAW--VQEPYTCYADQILDIIIKF-LMPSS 124
             ++I    GL KTA A + Y+S  +K  FDC AW  V + Y    D ++ II    ++ + 
Sbjct:   188 ISIFGMGGLGKTALARKLYNSGDVKRRFDCRAWTYVSQEYKT-RDILIRIIRSLGIVSAE 246

Query:   125 RLSEIK--DKNYEMKKIILHEYLMTKRYLIVIDDV 157
              + +IK  +++ E++ + L+  L  K Y++V+DDV
Sbjct:   247 EMEKIKMFEEDEELE-VYLYGLLEGKNYMVVVDDV 280

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2077572 RPM1 "RESISTANCE TO P. SYRINGAE PV MACULICOLA 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 116 (45.9 bits), Expect = 8.7e-06, P = 8.7e-06
 Identities = 39/162 (24%), Positives = 73/162 (45%)

Query:     5 ITDIKQRMQQLEHTDSEIIDAIKTFEAE--AGISSSS---KSRDTVGXXXXXXXXXXXXX 59
             I+D  +R    E+  + ++  I   +A+    IS SS        VG             
Sbjct:   128 ISDSMKRYYHSENYQAALLPPIDDGDAKWVNNISESSLFFSENSLVGIDAPKGKLIGRLL 187

Query:    60 XGPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPYTCYADQILDIIIKF 119
                PQ   V ++   G  KT  +A  + S  ++ +F+ +AWV    +   + +   +IK 
Sbjct:   188 SPEPQRIVVAVVGMGGSGKTTLSANIFKSQSVRRHFESYAWVTISKSYVIEDVFRTMIKE 247

Query:   120 LMPSSRLSEIKDKNYEM--KKII--LHEYLMTKRYLIVIDDV 157
                 +  ++I  + Y +  ++++  L EYL +KRY++V+DDV
Sbjct:   248 FYKEAD-TQIPAELYSLGYRELVEKLVEYLQSKRYIVVLDDV 288

GO:0006952 "defense response" evidence=IEA;ISS;TAS

GO:0043531 "ADP binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005886 "plasma membrane" evidence=IDA

GO:0000166 "nucleotide binding" evidence=ISS

GO:0009626 "plant-type hypersensitive response" evidence=IDA

TAIR|locus:2078012 ZAR1 "HOPZ-ACTIVATED RESISTANCE 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 115 (45.5 bits), Expect = 1.0e-05, P = 1.0e-05
 Identities = 32/94 (34%), Positives = 50/94 (53%)

Query:    64 QLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPYTCYADQILDIIIKFLMPS 123
             QL  +  +   GL KT  A E ++   ++H F+   WV    T   +QI+  I++ L  +
Sbjct:   181 QLLIMAFVGMGGLGKTTIAQEVFNDKEIEHRFERRIWVSVSQTFTEEQIMRSILRNLGDA 240

Query:   124 SRLSEIKDKNYEMKKIILHEYLMTKRYLIVIDDV 157
             S   +I      ++KI   +YL+ KRYLIV+DDV
Sbjct:   241 SVGDDIGTL---LRKI--QQYLLGKRYLIVMDDV 269

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2075170 RPP13 "RECOGNITION OF PERONOSPORA PARASITICA 13" [Arabidopsis thaliana (taxid:3702)]

 Score = 110 (43.8 bits), Expect = 3.3e-05, P = 3.3e-05
 Identities = 31/93 (33%), Positives = 49/93 (52%)

Query:    68 VTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAW--VQEPYTCYADQILDIIIKFLMPSSR 125
             ++I    GL KTA A + Y+S  +K  F+  AW  V + Y    D ++ II    M S  
Sbjct:   188 ISIFGMGGLGKTALARKLYNSRDVKERFEYRAWTYVSQEYKT-GDILMRIIRSLGMTSGE 246

Query:   126 -LSEIKDKNYEMKKIILHEYLMTKRYLIVIDDV 157
              L +I+    E  ++ L+  L  K+YL+V+DD+
Sbjct:   247 ELEKIRKFAEEELEVYLYGLLEGKKYLVVVDDI 279

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS;TAS

GO:0043531 "ADP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=TAS

GO:0009814 "defense response, incompatible interaction" evidence=IMP

GO:0005886 "plasma membrane" evidence=IDA

GO:0009626 "plant-type hypersensitive response" evidence=IMP

UNIPROTKB|Q84UB1 Pi-ta "Pi-ta protein" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 105 (42.0 bits), Expect = 0.00013, P = 0.00013
 Identities = 30/101 (29%), Positives = 52/101 (51%)

Query:    61 GPPQLSAVTILDSIGLDKTAFAAEAYS--SNYMKHYFDCHAWVQEPYTCYADQILDIIIK 118
             G P+L   +I+ S G+ KT  A E Y      +   FDC A+V+ P      +IL  ++ 
Sbjct:   225 GEPKLKVASIVGSGGVGKTTLATEFYRLHGRRLDAPFDCRAFVRTPRKPDMTKILTDMLS 284

Query:   119 FLMPSSRLSEIKDKNYEMKKII--LHEYLMTKRYLIVIDDV 157
              L P  +  +  D  +E+ +++  +  +L  KRY I+I+D+
Sbjct:   285 QLRPQHQ-HQSSDV-WEVDRLLETIRTHLQDKRYFIIIEDL 323

GO:0006952 "defense response" evidence=IMP

UNIPROTKB|Q9AY26 Pi-ta "Pi-ta protein" [Oryza sativa (taxid:4530)]

 Score = 105 (42.0 bits), Expect = 0.00013, P = 0.00013
 Identities = 30/101 (29%), Positives = 52/101 (51%)

Query:    61 GPPQLSAVTILDSIGLDKTAFAAEAYS--SNYMKHYFDCHAWVQEPYTCYADQILDIIIK 118
             G P+L   +I+ S G+ KT  A E Y      +   FDC A+V+ P      +IL  ++ 
Sbjct:   225 GEPKLKVASIVGSGGVGKTTLATEFYRLHGRRLDAPFDCRAFVRTPRKPDMTKILTDMLS 284

Query:   119 FLMPSSRLSEIKDKNYEMKKII--LHEYLMTKRYLIVIDDV 157
              L P  +  +  D  +E+ +++  +  +L  KRY I+I+D+
Sbjct:   285 QLRPQHQ-HQSSDV-WEVDRLLETIRTHLQDKRYFIIIEDL 323


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.318   0.133   0.378    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      157       143   0.00091  102 3  11 22  0.44    31
                                                     30  0.48    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  7
  No. of states in DFA:  595 (63 KB)
  Total size of DFA:  136 KB (2084 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  13.31u 0.11s 13.42t   Elapsed:  00:00:00
  Total cpu time:  13.31u 0.11s 13.42t   Elapsed:  00:00:00
  Start:  Sat May 11 01:22:20 2013   End:  Sat May 11 01:22:20 2013

GO:0006952 "defense response" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	157
pfam00931	285	pfam00931, NB-ARC, NB-ARC domain	9e-15

>gnl|CDD|216202 pfam00931, NB-ARC, NB-ARC domain

 Score = 69.3 bits (170), Expect = 9e-15
 Identities = 33/110 (30%), Positives = 57/110 (51%), Gaps = 2/110 (1%)

Query: 48  DDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPYTC 107
           +D +E L++ L+E    L  V I+   G+ KT  A + Y+ + +  +FD  AWV    T 
Sbjct: 2   EDMIEALIEKLLEMSDNLGVVGIVGMGGVGKTTLAKQIYNDDSVGGHFDSVAWVVVSKTY 61

Query: 108 YADQILDIIIKFLMPSSRLSEIKDKNYEMKKIILHEYLMTKRYLIVIDDV 157
              ++   I++ L      S+  +KN     + + E L+ KR+L+V+DDV
Sbjct: 62  TEFRLQKDILQELGLDD--SDWVEKNESELAVKIKEALLRKRFLLVLDDV 109

Length = 285

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	157
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	99.88
PF00931	287	NB-ARC: NB-ARC domain; InterPro: IPR002182 This is	99.87
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.71
PRK00411	394	cdc6 cell division control protein 6; Reviewed	99.43
TIGR02928	365	orc1/cdc6 family replication initiation protein. M	99.43
PF13191	185	AAA_16: AAA ATPase domain; PDB: 2V1U_A.	99.21
PF13401	131	AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S	99.17
COG1474	366	CDC6 Cdc6-related protein, AAA superfamily ATPase	99.14
cd01128	249	rho_factor Transcription termination factor rho is	99.12
TIGR03015	269	pepcterm_ATPase putative secretion ATPase, PEP-CTE	99.11
PTZ00202	550	tuzin; Provisional	99.1
PTZ00112	1164	origin recognition complex 1 protein; Provisional	99.02
PF01637	234	Arch_ATPase: Archaeal ATPase; InterPro: IPR011579	99.0
PRK09376	416	rho transcription termination factor Rho; Provisio	98.95
cd00009	151	AAA The AAA+ (ATPases Associated with a wide varie	98.88
TIGR00767	415	rho transcription termination factor Rho. Members	98.83
PRK11331	459	5-methylcytosine-specific restriction enzyme subun	98.79
KOG2543	438	consensus Origin recognition complex, subunit 5 [R	98.76
PF05729	166	NACHT: NACHT domain	98.63
PF05496	233	RuvB_N: Holliday junction DNA helicase ruvB N-term	98.56
TIGR00635	305	ruvB Holliday junction DNA helicase, RuvB subunit.	98.55
PRK04841	903	transcriptional regulator MalT; Provisional	98.55
PF05621	302	TniB: Bacterial TniB protein; InterPro: IPR008868	98.53
PRK04195	482	replication factor C large subunit; Provisional	98.53
PRK09361	225	radB DNA repair and recombination protein RadB; Pr	98.52
PRK00080	328	ruvB Holliday junction DNA helicase RuvB; Reviewed	98.52
PRK13342	413	recombination factor protein RarA; Reviewed	98.49
KOG2227	529	consensus Pre-initiation complex, subunit CDC6, AA	98.46
cd01393	226	recA_like RecA is a bacterial enzyme which has rol	98.45
smart00382	148	AAA ATPases associated with a variety of cellular	98.44
cd01123	235	Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of r	98.42
PRK12402	337	replication factor C small subunit 2; Reviewed	98.4
COG2256	436	MGS1 ATPase related to the helicase subunit of the	98.4
TIGR02237	209	recomb_radB DNA repair and recombination protein R	98.37
PF13173	128	AAA_14: AAA domain	98.36
TIGR03420	226	DnaA_homol_Hda DnaA regulatory inactivator Hda. Me	98.35
TIGR01242	364	26Sp45 26S proteasome subunit P45 family. Many pro	98.34
TIGR02639	731	ClpA ATP-dependent Clp protease ATP-binding subuni	98.33
CHL00095	821	clpC Clp protease ATP binding subunit	98.32
PRK03992	389	proteasome-activating nucleotidase; Provisional	98.3
PRK13341	725	recombination factor protein RarA/unknown domain f	98.3
PF00004	132	AAA: ATPase family associated with various cellula	98.3
PRK06893	229	DNA replication initiation factor; Validated	98.29
PF08423	256	Rad51: Rad51; InterPro: IPR013632 This domain is f	98.29
PF04665	241	Pox_A32: Poxvirus A32 protein; InterPro: IPR006758	98.28
PHA02544	316	44 clamp loader, small subunit; Provisional	98.28
PRK07952	244	DNA replication protein DnaC; Validated	98.27
PRK12377	248	putative replication protein; Provisional	98.24
KOG2028	554	consensus ATPase related to the helicase subunit o	98.23
PLN03025	319	replication factor C subunit; Provisional	98.23
cd01394	218	radB RadB. The archaeal protein radB shares simila	98.23
PRK08116	268	hypothetical protein; Validated	98.21
TIGR03689	512	pup_AAA proteasome ATPase. In the Actinobacteria,	98.21
PRK10865	857	protein disaggregation chaperone; Provisional	98.2
TIGR03345	852	VI_ClpV1 type VI secretion ATPase, ClpV1 family. M	98.19
TIGR02012	321	tigrfam_recA protein RecA. This model describes or	98.17
PRK14963	504	DNA polymerase III subunits gamma and tau; Provisi	98.17
PRK00440	319	rfc replication factor C small subunit; Reviewed	98.16
cd00983	325	recA RecA is a bacterial enzyme which has roles in	98.16
PRK14956	484	DNA polymerase III subunits gamma and tau; Provisi	98.15
TIGR02238	313	recomb_DMC1 meiotic recombinase Dmc1. This model d	98.14
PRK08084	235	DNA replication initiation factor; Provisional	98.14
PRK14957	546	DNA polymerase III subunits gamma and tau; Provisi	98.14
PRK08118	167	topology modulation protein; Reviewed	98.14
PRK12608	380	transcription termination factor Rho; Provisional	98.13
PRK14962	472	DNA polymerase III subunits gamma and tau; Provisi	98.11
PLN03187	344	meiotic recombination protein DMC1 homolog; Provis	98.11
PRK08727	233	hypothetical protein; Validated	98.1
PRK09354	349	recA recombinase A; Provisional	98.1
TIGR03346	852	chaperone_ClpB ATP-dependent chaperone ClpB. Membe	98.1
PRK14088	440	dnaA chromosomal replication initiation protein; P	98.1
PTZ00454	398	26S protease regulatory subunit 6B-like protein; P	98.09
PRK14961	363	DNA polymerase III subunits gamma and tau; Provisi	98.09
TIGR00362	405	DnaA chromosomal replication initiator protein Dna	98.08
PRK14949	944	DNA polymerase III subunits gamma and tau; Provisi	98.08
PRK07003	830	DNA polymerase III subunits gamma and tau; Validat	98.07
cd01133	274	F1-ATPase_beta F1 ATP synthase beta subunit, nucle	98.07
PF00308	219	Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013	98.06
PRK07261	171	topology modulation protein; Provisional	98.06
TIGR02236	310	recomb_radA DNA repair and recombination protein R	98.05
PF05673	249	DUF815: Protein of unknown function (DUF815); Inte	98.05
PRK05541	176	adenylylsulfate kinase; Provisional	98.05
PRK12323	700	DNA polymerase III subunits gamma and tau; Provisi	98.05
PRK00149	450	dnaA chromosomal replication initiation protein; R	98.04
TIGR02239	316	recomb_RAD51 DNA repair protein RAD51. This eukary	98.04
TIGR02881	261	spore_V_K stage V sporulation protein K. Members o	98.04
PRK14960	702	DNA polymerase III subunits gamma and tau; Provisi	98.01
smart00763	361	AAA_PrkA PrkA AAA domain. This is a family of PrkA	98.01
PRK08181	269	transposase; Validated	98.01
TIGR01241	495	FtsH_fam ATP-dependent metalloprotease FtsH. HflB(	98.0
PTZ00361	438	26 proteosome regulatory subunit 4-like protein; P	98.0
PRK06696	223	uridine kinase; Validated	98.0
PLN03186	342	DNA repair protein RAD51 homolog; Provisional	98.0
KOG0733	802	consensus Nuclear AAA ATPase (VCP subfamily) [Post	97.99
PRK14969	527	DNA polymerase III subunits gamma and tau; Provisi	97.99
PRK14087	450	dnaA chromosomal replication initiation protein; P	97.99
PRK05564	313	DNA polymerase III subunit delta'; Validated	97.98
PRK08939	306	primosomal protein DnaI; Reviewed	97.98
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	97.98
COG0468	279	RecA RecA/RadA recombinase [DNA replication, recom	97.98
PRK08691	709	DNA polymerase III subunits gamma and tau; Validat	97.98
PRK04301	317	radA DNA repair and recombination protein RadA; Va	97.97
PRK06645	507	DNA polymerase III subunits gamma and tau; Validat	97.97
cd01120	165	RecA-like_NTPases RecA-like NTPases. This family i	97.97
PRK14970	367	DNA polymerase III subunits gamma and tau; Provisi	97.97
PRK14950	585	DNA polymerase III subunits gamma and tau; Provisi	97.96
PRK14958	509	DNA polymerase III subunits gamma and tau; Provisi	97.96
PRK11034	758	clpA ATP-dependent Clp protease ATP-binding subuni	97.96
CHL00181	287	cbbX CbbX; Provisional	97.96
COG2255	332	RuvB Holliday junction resolvasome, helicase subun	97.96
TIGR00602	637	rad24 checkpoint protein rad24. This family is bas	97.95
PRK14964	491	DNA polymerase III subunits gamma and tau; Provisi	97.95
PF13207	121	AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6	97.94
TIGR00763	775	lon ATP-dependent protease La. This protein is ind	97.93
PRK14951	618	DNA polymerase III subunits gamma and tau; Provisi	97.92
TIGR02397	355	dnaX_nterm DNA polymerase III, subunit gamma and t	97.91
CHL00176	638	ftsH cell division protein; Validated	97.91
PRK14955	397	DNA polymerase III subunits gamma and tau; Provisi	97.9
PTZ00035	337	Rad51 protein; Provisional	97.9
PRK06067	234	flagellar accessory protein FlaH; Validated	97.89
TIGR03877	237	thermo_KaiC_1 KaiC domain protein, Ph0284 family.	97.89
PRK09183	259	transposase/IS protein; Provisional	97.89
PRK07667	193	uridine kinase; Provisional	97.88
PRK06526	254	transposase; Provisional	97.88
PRK12422	445	chromosomal replication initiation protein; Provis	97.88
TIGR01243	733	CDC48 AAA family ATPase, CDC48 subfamily. This sub	97.87
TIGR02880	284	cbbX_cfxQ probable Rubsico expression protein CbbX	97.87
PRK05896	605	DNA polymerase III subunits gamma and tau; Validat	97.87
cd01121	372	Sms Sms (bacterial radA) DNA repair protein. This	97.87
PF01695	178	IstB_IS21: IstB-like ATP binding protein; InterPro	97.85
PRK09111	598	DNA polymerase III subunits gamma and tau; Validat	97.85
PRK09519	790	recA DNA recombination protein RecA; Reviewed	97.84
PRK08233	182	hypothetical protein; Provisional	97.83
TIGR02639	731	ClpA ATP-dependent Clp protease ATP-binding subuni	97.82
KOG0744	423	consensus AAA+-type ATPase [Posttranslational modi	97.81
PF00448	196	SRP54: SRP54-type protein, GTPase domain; InterPro	97.8
PRK07940	394	DNA polymerase III subunit delta'; Validated	97.8
PRK07994	647	DNA polymerase III subunits gamma and tau; Validat	97.79
PF00485	194	PRK: Phosphoribulokinase / Uridine kinase family;	97.79
TIGR03878	259	thermo_KaiC_2 KaiC domain protein, AF_0795 family.	97.79
cd03115	173	SRP The signal recognition particle (SRP) mediates	97.77
PRK14952	584	DNA polymerase III subunits gamma and tau; Provisi	97.77
TIGR00064	272	ftsY signal recognition particle-docking protein F	97.76
COG1484	254	DnaC DNA replication protein [DNA replication, rec	97.75
PF00154	322	RecA: recA bacterial DNA recombination protein; In	97.74
TIGR03499	282	FlhF flagellar biosynthetic protein FlhF.	97.74
PRK06921	266	hypothetical protein; Provisional	97.74
PRK09270	229	nucleoside triphosphate hydrolase domain-containin	97.74
TIGR03881	229	KaiC_arch_4 KaiC domain protein, PAE1156 family. M	97.74
PRK14954	620	DNA polymerase III subunits gamma and tau; Provisi	97.73
PRK11823	446	DNA repair protein RadA; Provisional	97.72
KOG0735	952	consensus AAA+-type ATPase [Posttranslational modi	97.72
COG0466	782	Lon ATP-dependent Lon protease, bacterial type [Po	97.71
COG4608	268	AppF ABC-type oligopeptide transport system, ATPas	97.71
PRK10787	784	DNA-binding ATP-dependent protease La; Provisional	97.71
KOG0991	333	consensus Replication factor C, subunit RFC2 [Repl	97.71
TIGR02655	484	circ_KaiC circadian clock protein KaiC. Members of	97.71
PRK08903	227	DnaA regulatory inactivator Hda; Validated	97.7
TIGR01243	733	CDC48 AAA family ATPase, CDC48 subfamily. This sub	97.7
TIGR00390	441	hslU ATP-dependent protease HslVU, ATPase subunit.	97.7
PLN00020	413	ribulose bisphosphate carboxylase/oxygenase activa	97.7
COG1618	179	Predicted nucleotide kinase [Nucleotide transport	97.69
PRK15455	644	PrkA family serine protein kinase; Provisional	97.69
PRK05201	443	hslU ATP-dependent protease ATP-binding subunit Hs	97.68
PRK04040	188	adenylate kinase; Provisional	97.68
COG0572	218	Udk Uridine kinase [Nucleotide transport and metab	97.68
PF14516	331	AAA_35: AAA-like domain	97.68
TIGR00416	454	sms DNA repair protein RadA. The gene protuct code	97.68
PTZ00301	210	uridine kinase; Provisional	97.67
PRK14086	617	dnaA chromosomal replication initiation protein; P	97.67
PRK10867	433	signal recognition particle protein; Provisional	97.67
cd02025	220	PanK Pantothenate kinase (PanK) catalyzes the phos	97.65
PRK00771	437	signal recognition particle protein Srp54; Provisi	97.65
COG0467	260	RAD55 RecA-superfamily ATPases implicated in signa	97.65
PRK05642	234	DNA replication initiation factor; Validated	97.64
TIGR00959	428	ffh signal recognition particle protein. This mode	97.63
CHL00095	821	clpC Clp protease ATP binding subunit	97.62
TIGR02903	615	spore_lon_C ATP-dependent protease, Lon family. Me	97.62
PRK14953	486	DNA polymerase III subunits gamma and tau; Provisi	97.61
PRK06835	329	DNA replication protein DnaC; Validated	97.61
KOG1969	877	consensus DNA replication checkpoint protein CHL12	97.6
PF13238	129	AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB	97.59
PRK08972	444	fliI flagellum-specific ATP synthase; Validated	97.59
PRK04296	190	thymidine kinase; Provisional	97.59
PRK06002	450	fliI flagellum-specific ATP synthase; Validated	97.58
PRK04328	249	hypothetical protein; Provisional	97.58
PRK08927	442	fliI flagellum-specific ATP synthase; Validated	97.58
PRK13531	498	regulatory ATPase RavA; Provisional	97.58
PRK10865	857	protein disaggregation chaperone; Provisional	97.57
TIGR00764	608	lon_rel lon-related putative ATP-dependent proteas	97.56
PRK05439	311	pantothenate kinase; Provisional	97.55
COG0470	325	HolB ATPase involved in DNA replication [DNA repli	97.55
COG2607	287	Predicted ATPase (AAA+ superfamily) [General funct	97.54
PRK05973	237	replicative DNA helicase; Provisional	97.54
PF00158	168	Sigma54_activat: Sigma-54 interaction domain; Inte	97.54
PRK07764	824	DNA polymerase III subunits gamma and tau; Validat	97.54
PF06745	226	KaiC: KaiC; InterPro: IPR014774 This entry represe	97.53
TIGR03346	852	chaperone_ClpB ATP-dependent chaperone ClpB. Membe	97.53
cd00984	242	DnaB_C DnaB helicase C terminal domain. The hexame	97.52
PRK11034	758	clpA ATP-dependent Clp protease ATP-binding subuni	97.52
PRK14974	336	cell division protein FtsY; Provisional	97.52
PRK14722	374	flhF flagellar biosynthesis regulator FlhF; Provis	97.51
CHL00195	489	ycf46 Ycf46; Provisional	97.51
COG1222	406	RPT1 ATP-dependent 26S proteasome regulatory subun	97.51
PRK14965	576	DNA polymerase III subunits gamma and tau; Provisi	97.51
TIGR00678	188	holB DNA polymerase III, delta' subunit. At positi	97.5
TIGR03345	852	VI_ClpV1 type VI secretion ATPase, ClpV1 family. M	97.5
PRK14959	624	DNA polymerase III subunits gamma and tau; Provisi	97.49
PRK06647	563	DNA polymerase III subunits gamma and tau; Validat	97.49
PF12775	272	AAA_7: P-loop containing dynein motor region D3; P	97.49
KOG0736	953	consensus Peroxisome assembly factor 2 containing	97.48
PF13671	143	AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1	97.48
PRK05480	209	uridine/cytidine kinase; Provisional	97.48
COG1419	407	FlhF Flagellar GTP-binding protein [Cell motility	97.47
KOG2004	906	consensus Mitochondrial ATP-dependent protease PIM	97.47
PRK12597	461	F0F1 ATP synthase subunit beta; Provisional	97.47
PF07728	139	AAA_5: AAA domain (dynein-related subfamily); Inte	97.47
PRK15453	290	phosphoribulokinase; Provisional	97.46
TIGR03575	340	selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryoti	97.45
cd02028	179	UMPK_like Uridine monophosphate kinase_like (UMPK_	97.45
TIGR02902	531	spore_lonB ATP-dependent protease LonB. Members of	97.44
KOG1514	767	consensus Origin recognition complex, subunit 1, a	97.44
PRK08149	428	ATP synthase SpaL; Validated	97.44
PRK00889	175	adenylylsulfate kinase; Provisional	97.44
PRK06762	166	hypothetical protein; Provisional	97.44
PRK05563	559	DNA polymerase III subunits gamma and tau; Validat	97.43
TIGR00150	133	HI0065_YjeE ATPase, YjeE family. Members of this f	97.43
cd01135	276	V_A-ATPase_B V/A-type ATP synthase (non-catalytic)	97.42
COG0593	408	DnaA ATPase involved in DNA replication initiation	97.42
TIGR02640	262	gas_vesic_GvpN gas vesicle protein GvpN. Members o	97.42
KOG0739	439	consensus AAA+-type ATPase [Posttranslational modi	97.41
COG1066	456	Sms Predicted ATP-dependent serine protease [Postt	97.41
TIGR00235	207	udk uridine kinase. Model contains a number of lon	97.41
TIGR01817	534	nifA Nif-specific regulatory protein. This model r	97.41
PRK08451	535	DNA polymerase III subunits gamma and tau; Validat	97.4
COG1223	368	Predicted ATPase (AAA+ superfamily) [General funct	97.4
PRK07594	433	type III secretion system ATPase SsaN; Validated	97.4
PRK06936	439	type III secretion system ATPase; Provisional	97.4
PF07726	131	AAA_3: ATPase family associated with various cellu	97.4
PRK08533	230	flagellar accessory protein FlaH; Reviewed	97.4
PRK03839	180	putative kinase; Provisional	97.39
COG0542	786	clpA ATP-binding subunits of Clp protease and DnaK	97.39
PF01583	156	APS_kinase: Adenylylsulphate kinase; InterPro: IPR	97.39
PRK14948	620	DNA polymerase III subunits gamma and tau; Provisi	97.39
PHA02244	383	ATPase-like protein	97.39
PRK13765	637	ATP-dependent protease Lon; Provisional	97.38
COG0714	329	MoxR-like ATPases [General function prediction onl	97.38
PRK11889	436	flhF flagellar biosynthesis regulator FlhF; Provis	97.38
TIGR00554	290	panK_bact pantothenate kinase, bacterial type. Sho	97.38
PRK06547	172	hypothetical protein; Provisional	97.38
TIGR01360	188	aden_kin_iso1 adenylate kinase, isozyme 1 subfamil	97.37
TIGR03498	418	FliI_clade3 flagellar protein export ATPase FliI.	97.36
PF08433	270	KTI12: Chromatin associated protein KTI12 ; InterP	97.36
PRK09099	441	type III secretion system ATPase; Provisional	97.36
PRK09280	463	F0F1 ATP synthase subunit beta; Validated	97.36
PRK12727	559	flagellar biosynthesis regulator FlhF; Provisional	97.35
TIGR01425	429	SRP54_euk signal recognition particle protein SRP5	97.34
TIGR03305	449	alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit	97.34
cd01131	198	PilT Pilus retraction ATPase PilT. PilT is a nucle	97.34
PF00006	215	ATP-synt_ab: ATP synthase alpha/beta family, nucle	97.33
cd02024	187	NRK1 Nicotinamide riboside kinase (NRK) is an enzy	97.33
KOG0733	802	consensus Nuclear AAA ATPase (VCP subfamily) [Post	97.32
PRK00131	175	aroK shikimate kinase; Reviewed	97.31
PRK05703	424	flhF flagellar biosynthesis regulator FlhF; Valida	97.31
PRK12724	432	flagellar biosynthesis regulator FlhF; Provisional	97.31
COG1703	323	ArgK Putative periplasmic protein kinase ArgK and	97.31
PRK12723	388	flagellar biosynthesis regulator FlhF; Provisional	97.31
cd02019	69	NK Nucleoside/nucleotide kinase (NK) is a protein	97.31
PRK10463	290	hydrogenase nickel incorporation protein HypB; Pro	97.31
PRK14738	206	gmk guanylate kinase; Provisional	97.3
PF03308	266	ArgK: ArgK protein; InterPro: IPR005129 Bacterial	97.3
COG0542	786	clpA ATP-binding subunits of Clp protease and DnaK	97.29
TIGR03574	249	selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Mem	97.29
PF01078	206	Mg_chelatase: Magnesium chelatase, subunit ChlI; I	97.29
PRK14971	614	DNA polymerase III subunits gamma and tau; Provisi	97.29
PRK06620	214	hypothetical protein; Validated	97.29
cd02029	277	PRK_like Phosphoribulokinase-like (PRK-like) is a	97.28
PRK09302	509	circadian clock protein KaiC; Reviewed	97.28
COG3899	849	Predicted ATPase [General function prediction only	97.28
PRK06217	183	hypothetical protein; Validated	97.28
PF13481	193	AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.	97.26
PRK05922	434	type III secretion system ATPase; Validated	97.26
PRK08472	434	fliI flagellum-specific ATP synthase; Validated	97.26
COG0464	494	SpoVK ATPases of the AAA+ class [Posttranslational	97.25
COG0563	178	Adk Adenylate kinase and related kinases [Nucleoti	97.25
KOG0729	435	consensus 26S proteasome regulatory complex, ATPas	97.25
KOG0730	693	consensus AAA+-type ATPase [Posttranslational modi	97.24
TIGR00041	195	DTMP_kinase thymidylate kinase. Function: phosphor	97.24
PRK00625	173	shikimate kinase; Provisional	97.24
COG3903	414	Predicted ATPase [General function prediction only	97.23
TIGR01041	458	ATP_syn_B_arch ATP synthase archaeal, B subunit. A	97.22
PRK12726	407	flagellar biosynthesis regulator FlhF; Provisional	97.22
cd01122	271	GP4d_helicase GP4d_helicase is a homohexameric 5'-	97.21
KOG3347	176	consensus Predicted nucleotide kinase/nuclear prot	97.21
cd02027	149	APSK Adenosine 5'-phosphosulfate kinase (APSK) cat	97.21
KOG0734	752	consensus AAA+-type ATPase containing the peptidas	97.21
TIGR01040	466	V-ATPase_V1_B V-type (H+)-ATPase V1, B subunit. Th	97.21
PRK13947	171	shikimate kinase; Provisional	97.2
cd01132	274	F1_ATPase_alpha F1 ATP synthase alpha, central dom	97.2
COG1936	180	Predicted nucleotide kinase (related to CMP and AM	97.2
PF00625	183	Guanylate_kin: Guanylate kinase; InterPro: IPR0081	97.2
cd02023	198	UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.	97.2
TIGR01359	183	UMP_CMP_kin_fam UMP-CMP kinase family. This subfam	97.19
TIGR03496	411	FliI_clade1 flagellar protein export ATPase FliI.	97.19
cd03214	180	ABC_Iron-Siderophores_B12_Hemin ABC transporters,	97.19
TIGR02322	179	phosphon_PhnN phosphonate metabolism protein/1,5-b	97.18
KOG0735	952	consensus AAA+-type ATPase [Posttranslational modi	97.18
TIGR03497	413	FliI_clade2 flagellar protein export ATPase FliI.	97.17
KOG0989	346	consensus Replication factor C, subunit RFC4 [Repl	97.17
PRK09112	351	DNA polymerase III subunit delta'; Validated	97.17
PHA00729	226	NTP-binding motif containing protein	97.17
cd01136	326	ATPase_flagellum-secretory_path_III Flagellum-spec	97.16
PF00910	107	RNA_helicase: RNA helicase; InterPro: IPR000605 He	97.15
PRK05688	451	fliI flagellum-specific ATP synthase; Validated	97.15
PRK07721	438	fliI flagellum-specific ATP synthase; Validated	97.14
PF13086	236	AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV	97.14
PTZ00185	574	ATPase alpha subunit; Provisional	97.14
TIGR03263	180	guanyl_kin guanylate kinase. Members of this famil	97.14
PRK12678	672	transcription termination factor Rho; Provisional	97.13
PRK00279	215	adk adenylate kinase; Reviewed	97.13
cd00227	175	CPT Chloramphenicol (Cm) phosphotransferase (CPT).	97.13
cd01672	200	TMPK Thymidine monophosphate kinase (TMPK), also k	97.12
PF06068	398	TIP49: TIP49 C-terminus; InterPro: IPR010339 This	97.12
PRK05342	412	clpX ATP-dependent protease ATP-binding subunit Cl	97.11
cd01124	187	KaiC KaiC is a circadian clock protein primarily f	97.11
PRK06820	440	type III secretion system ATPase; Validated	97.11
PRK07196	434	fliI flagellum-specific ATP synthase; Validated	97.11
PRK10536	262	hypothetical protein; Provisional	97.1
TIGR01026	440	fliI_yscN ATPase FliI/YscN family. This family of	97.1
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	97.09
cd02021	150	GntK Gluconate kinase (GntK) catalyzes the phospho	97.09
PRK14721	420	flhF flagellar biosynthesis regulator FlhF; Provis	97.09
PRK00300	205	gmk guanylate kinase; Provisional	97.09
COG3267	269	ExeA Type II secretory pathway, component ExeA (pr	97.09
PRK05022	509	anaerobic nitric oxide reductase transcription reg	97.08
cd02020	147	CMPK Cytidine monophosphate kinase (CMPK) catalyze	97.07
TIGR01039	461	atpD ATP synthase, F1 beta subunit. The sequences	97.07
PF03205	140	MobB: Molybdopterin guanine dinucleotide synthesis	97.06
cd00071	137	GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.	97.06
TIGR02546	422	III_secr_ATP type III secretion apparatus H+-trans	97.06
PF14532	138	Sigma54_activ_2: Sigma-54 interaction domain; PDB:	97.05
PRK10416	318	signal recognition particle-docking protein FtsY;	97.05
PRK05800	170	cobU adenosylcobinamide kinase/adenosylcobinamide-	97.05
PTZ00088	229	adenylate kinase 1; Provisional	97.05
COG2019	189	AdkA Archaeal adenylate kinase [Nucleotide transpo	97.03
PRK03846	198	adenylylsulfate kinase; Provisional	97.03
PRK13949	169	shikimate kinase; Provisional	97.02
PRK06793	432	fliI flagellum-specific ATP synthase; Validated	97.02
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	97.01
cd00544	169	CobU Adenosylcobinamide kinase / adenosylcobinamid	97.01
PRK10751	173	molybdopterin-guanine dinucleotide biosynthesis pr	97.01
PRK14530	215	adenylate kinase; Provisional	97.0
PRK09087	226	hypothetical protein; Validated	97.0
cd03221	144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	97.0
cd00464	154	SK Shikimate kinase (SK) is the fifth enzyme in th	96.99
PRK10078	186	ribose 1,5-bisphosphokinase; Provisional	96.99
PF03266	168	NTPase_1: NTPase; InterPro: IPR004948 This entry r	96.99
PRK09435	332	membrane ATPase/protein kinase; Provisional	96.99
PRK06305	451	DNA polymerase III subunits gamma and tau; Validat	96.99
PRK05537	568	bifunctional sulfate adenylyltransferase subunit 1	96.99
TIGR03600	421	phage_DnaB phage replicative helicase, DnaB family	96.99
TIGR00382	413	clpX endopeptidase Clp ATP-binding regulatory subu	96.97
TIGR02030	337	BchI-ChlI magnesium chelatase ATPase subunit I. Th	96.97
CHL00060	494	atpB ATP synthase CF1 beta subunit	96.97
PLN02924	220	thymidylate kinase	96.97
PRK06761	282	hypothetical protein; Provisional	96.96
PRK07471	365	DNA polymerase III subunit delta'; Validated	96.96
PRK11608	326	pspF phage shock protein operon transcriptional ac	96.95
PF03193	161	DUF258: Protein of unknown function, DUF258; Inter	96.95
PRK13948	182	shikimate kinase; Provisional	96.95
COG1428	216	Deoxynucleoside kinases [Nucleotide transport and	96.95
PRK13407	334	bchI magnesium chelatase subunit I; Provisional	96.95
TIGR03880	224	KaiC_arch_3 KaiC domain protein, AF_0351 family. T	96.95
PRK12339	197	2-phosphoglycerate kinase; Provisional	96.94
PRK15429	686	formate hydrogenlyase transcriptional activator Fh	96.93
COG0003	322	ArsA Predicted ATPase involved in chromosome parti	96.93
TIGR03324	497	alt_F1F0_F1_al alternate F1F0 ATPase, F1 subunit a	96.92
KOG0738	491	consensus AAA+-type ATPase [Posttranslational modi	96.92
CHL00059	485	atpA ATP synthase CF1 alpha subunit	96.92
PRK06995	484	flhF flagellar biosynthesis regulator FlhF; Valida	96.92
COG0541	451	Ffh Signal recognition particle GTPase [Intracellu	96.91
PLN02348	395	phosphoribulokinase	96.91
cd03223	166	ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass	96.91
PF08477	119	Miro: Miro-like protein; InterPro: IPR013684 Mitoc	96.9
PRK13975	196	thymidylate kinase; Provisional	96.9
PRK14723	767	flhF flagellar biosynthesis regulator FlhF; Provis	96.9
cd01878	204	HflX HflX subfamily. A distinct conserved domain w	96.89
PRK05595	444	replicative DNA helicase; Provisional	96.89
TIGR01313	163	therm_gnt_kin carbohydrate kinase, thermoresistant	96.89
PRK10733	644	hflB ATP-dependent metalloprotease; Reviewed	96.89
PRK13946	184	shikimate kinase; Provisional	96.88
COG1224	450	TIP49 DNA helicase TIP49, TBP-interacting protein	96.88
COG1124	252	DppF ABC-type dipeptide/oligopeptide/nickel transp	96.88
cd01134	369	V_A-ATPase_A V/A-type ATP synthase catalytic subun	96.88
CHL00081	350	chlI Mg-protoporyphyrin IX chelatase	96.88
PRK13973	213	thymidylate kinase; Provisional	96.88
PRK07133	725	DNA polymerase III subunits gamma and tau; Validat	96.86
PF02374	305	ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_	96.85
PRK04196	460	V-type ATP synthase subunit B; Provisional	96.85
COG0125	208	Tmk Thymidylate kinase [Nucleotide transport and m	96.84
PRK05057	172	aroK shikimate kinase I; Reviewed	96.84
PF13521	163	AAA_28: AAA domain; PDB: 1LW7_A.	96.84
TIGR00750	300	lao LAO/AO transport system ATPase. Mutations have	96.83
PRK07399	314	DNA polymerase III subunit delta'; Validated	96.83
COG1157	441	FliI Flagellar biosynthesis/type III secretory pat	96.83
TIGR00962	501	atpA proton translocating ATP synthase, F1 alpha s	96.83
PLN02318	656	phosphoribulokinase/uridine kinase	96.82
PRK07960	455	fliI flagellum-specific ATP synthase; Validated	96.82
PRK14737	186	gmk guanylate kinase; Provisional	96.81
PF07693	325	KAP_NTPase: KAP family P-loop domain; InterPro: IP	96.81
TIGR02655	484	circ_KaiC circadian clock protein KaiC. Members of	96.81
PF08298	358	AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 Thi	96.8
PRK04182	180	cytidylate kinase; Provisional	96.79
PRK14527	191	adenylate kinase; Provisional	96.79
COG1373	398	Predicted ATPase (AAA+ superfamily) [General funct	96.79
PRK03731	171	aroL shikimate kinase II; Reviewed	96.78
PF03215	519	Rad17: Rad17 cell cycle checkpoint protein	96.78
PRK08760	476	replicative DNA helicase; Provisional	96.77
TIGR02974	329	phageshock_pspF psp operon transcriptional activat	96.77
cd00820	107	PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC	96.77
PLN02200	234	adenylate kinase family protein	96.76
PRK00698	205	tmk thymidylate kinase; Validated	96.75
COG1100	219	GTPase SAR1 and related small G proteins [General	96.74
cd01428	194	ADK Adenylate kinase (ADK) catalyzes the reversibl	96.74
PRK14532	188	adenylate kinase; Provisional	96.73
TIGR01650	327	PD_CobS cobaltochelatase, CobS subunit. This model	96.72
COG0465	596	HflB ATP-dependent Zn proteases [Posttranslational	96.72
COG0194	191	Gmk Guanylate kinase [Nucleotide transport and met	96.72
PRK09302	509	circadian clock protein KaiC; Reviewed	96.71
COG1102	179	Cmk Cytidylate kinase [Nucleotide transport and me	96.71
TIGR00665	434	DnaB replicative DNA helicase. This model describe	96.71
) proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor" target="_blank" href="http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PF06309">PF06309	127	Torsin: Torsin; InterPro: IPR010448 This family co	96.7
TIGR02173	171	cyt_kin_arch cytidylate kinase, putative. Proteins	96.7
cd04139	164	RalA_RalB RalA/RalB subfamily. The Ral (Ras-like)	96.7
COG2842	297	Uncharacterized ATPase, putative transposase [Gene	96.69
PF13604	196	AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL	96.68
COG1763	161	MobB Molybdopterin-guanine dinucleotide biosynthes	96.67
PRK08356	195	hypothetical protein; Provisional	96.67
PF00005	137	ABC_tran: ABC transporter This structure is on hol	96.66
COG0237	201	CoaE Dephospho-CoA kinase [Coenzyme metabolism]	96.66
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	96.66
PRK09281	502	F0F1 ATP synthase subunit alpha; Validated	96.66
PRK09825	176	idnK D-gluconate kinase; Provisional	96.65
KOG0727	408	consensus 26S proteasome regulatory complex, ATPas	96.65
PRK13976	209	thymidylate kinase; Provisional	96.65
PRK13343	502	F0F1 ATP synthase subunit alpha; Provisional	96.64
PHA02530	300	pseT polynucleotide kinase; Provisional	96.64
KOG0728	404	consensus 26S proteasome regulatory complex, ATPas	96.64
PF01926	116	MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I	96.64
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	96.63
smart00072	184	GuKc Guanylate kinase homologues. Active enzymes c	96.63
PTZ00494	664	tuzin-like protein; Provisional	96.62
PRK14490	369	putative bifunctional molybdopterin-guanine dinucl	96.62
KOG1532	366	consensus GTPase XAB1, interacts with DNA repair p	96.61
TIGR00073	207	hypB hydrogenase accessory protein HypB. HypB is i	96.61
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	96.6
smart00487	201	DEXDc DEAD-like helicases superfamily.	96.59
cd02034	116	CooC The accessory protein CooC, which contains a	96.59
PRK08154	309	anaerobic benzoate catabolism transcriptional regu	96.59
TIGR00176	155	mobB molybdopterin-guanine dinucleotide biosynthes	96.59
PRK14531	183	adenylate kinase; Provisional	96.57
cd02022	179	DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.2	96.57
PLN02796	347	D-glycerate 3-kinase	96.57
PRK14493	274	putative bifunctional molybdopterin-guanine dinucl	96.56
PF03029	238	ATP_bind_1: Conserved hypothetical ATP binding pro	96.56
PRK09165	497	replicative DNA helicase; Provisional	96.56
PF13245	76	AAA_19: Part of AAA domain	96.56
PRK01184	184	hypothetical protein; Provisional	96.55
cd01130	186	VirB11-like_ATPase Type IV secretory pathway compo	96.55
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	96.55
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	96.55
cd01125	239	repA Hexameric Replicative Helicase RepA. RepA is	96.54
PRK13768	253	GTPase; Provisional	96.54
TIGR00455	184	apsK adenylylsulfate kinase (apsK). Important resi	96.53
KOG0726	440	consensus 26S proteasome regulatory complex, ATPas	96.53
PRK06731	270	flhF flagellar biosynthesis regulator FlhF; Valida	96.53
KOG0651	388	consensus 26S proteasome regulatory complex, ATPas	96.52
TIGR01420	343	pilT_fam pilus retraction protein PilT. This model	96.52
KOG2228	408	consensus Origin recognition complex, subunit 4 [R	96.52
cd01862	172	Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th	96.51
cd04163	168	Era Era subfamily. Era (E. coli Ras-like protein)	96.51
COG0529	197	CysC Adenylylsulfate kinase and related kinases [I	96.51
PRK15424	538	propionate catabolism operon regulatory protein Pr	96.5
PRK13695	174	putative NTPase; Provisional	96.5
PF05970	364	PIF1: PIF1-like helicase; InterPro: IPR010285 This	96.5
PRK08099	399	bifunctional DNA-binding transcriptional repressor	96.5
TIGR02673	214	FtsE cell division ATP-binding protein FtsE. This	96.5
TIGR01166	190	cbiO cobalt transport protein ATP-binding subunit.	96.49
cd03269	210	ABC_putative_ATPase This subfamily is involved in	96.49
PF10662	143	PduV-EutP: Ethanolamine utilisation - propanediol	96.49
cd04119	168	RJL RJL (RabJ-Like) subfamily. RJLs are found in m	96.47
cd01983	99	Fer4_NifH The Fer4_NifH superfamily contains a var	96.47
COG0703	172	AroK Shikimate kinase [Amino acid transport and me	96.47
smart00173	164	RAS Ras subfamily of RAS small GTPases. Similar in	96.47
PRK05748	448	replicative DNA helicase; Provisional	96.47
cd03265	220	ABC_DrrA DrrA is the ATP-binding protein component	96.46
PRK02496	184	adk adenylate kinase; Provisional	96.46
cd03116	159	MobB Molybdenum is an essential trace element in t	96.45
cd04155	173	Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f	96.45
TIGR00231	161	small_GTP small GTP-binding protein domain. This m	96.45

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=99.88  E-value=9.4e-22  Score=168.18  Aligned_cols=109  Identities=28%  Similarity=0.354  Sum_probs=98.4

Q ss_pred             cccHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhcCcc-cccccCeeEEEEcCCCCCHHHHHHHHHHHhCCC
Q 045087           45 VGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSSNY-MKHYFDCHAWVQEPYTCYADQILDIIIKFLMPS  123 (157)
Q Consensus        45 vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~-~~~~F~~~~wv~~~~~~~~~~~l~~i~~~l~~~  123 (157)
                      ||.+..++++.+.|..++.  .+++|+||||+||||||+.++++.. ++.+|+..+||.+++.++...+.++|+..++..
T Consensus       161 VG~e~~~~kl~~~L~~d~~--~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~iq~~Il~~l~~~  238 (889)
T KOG4658|consen  161 VGLETMLEKLWNRLMEDDV--GIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTRKIQQTILERLGLL  238 (889)
T ss_pred             ccHHHHHHHHHHHhccCCC--CEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcccccHHhHHHHHHHHhccC
Confidence            9999999999999998864  8999999999999999999999877 999999999999999999999999999999873


Q ss_pred             CCCcccccccHHHHHHHHHHHhcCCcEEEEeeCC
Q 045087          124 SRLSEIKDKNYEMKKIILHEYLMTKRYLIVIDDV  157 (157)
Q Consensus       124 ~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdV  157 (157)
                      ...  ....+.+++...|.+.|++||||||||||
T Consensus       239 ~~~--~~~~~~~~~~~~i~~~L~~krfllvLDDI  270 (889)
T KOG4658|consen  239 DEE--WEDKEEDELASKLLNLLEGKRFLLVLDDI  270 (889)
T ss_pred             Ccc--cchhhHHHHHHHHHHHhccCceEEEEecc
Confidence            321  23444579999999999999999999997

>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []

Probab=99.87  E-value=9.4e-22  Score=149.64  Aligned_cols=110  Identities=28%  Similarity=0.378  Sum_probs=95.6

Q ss_pred             cHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCCCCCHHHHHHHHHHHhCCCCCC
Q 045087           47 LDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPYTCYADQILDIIIKFLMPSSRL  126 (157)
Q Consensus        47 r~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~l~~i~~~l~~~~~~  126 (157)
                      |+.++++|.++|.......++|+|+||||+||||||..++++..++.+|+.++|+.++...+..+++..|+.++......
T Consensus         1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~   80 (287)
T PF00931_consen    1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSS   80 (287)
T ss_dssp             -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-ST
T ss_pred             CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccccccc
Confidence            78999999999998667899999999999999999999999666899999999999999988999999999999986431


Q ss_pred             cccccccHHHHHHHHHHHhcCCcEEEEeeCC
Q 045087          127 SEIKDKNYEMKKIILHEYLMTKRYLIVIDDV  157 (157)
Q Consensus       127 ~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdV  157 (157)
                      . ....+.+++...+.+.|.+++||||||||
T Consensus        81 ~-~~~~~~~~~~~~l~~~L~~~~~LlVlDdv  110 (287)
T PF00931_consen   81 I-SDPKDIEELQDQLRELLKDKRCLLVLDDV  110 (287)
T ss_dssp             S-SCCSSHHHHHHHHHHHHCCTSEEEEEEEE
T ss_pred             c-ccccccccccccchhhhccccceeeeeee
Confidence            1 14567788999999999999999999996

This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.

>PLN03210 Resistant to P

Probab=99.71  E-value=1.4e-16  Score=140.80  Aligned_cols=114  Identities=22%  Similarity=0.338  Sum_probs=83.6

Q ss_pred             cccCCCCCCccccHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEc---CCC-----
Q 045087           35 ISSSSKSRDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQE---PYT-----  106 (157)
Q Consensus        35 ~~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~---~~~-----  106 (157)
                      ..++...+.+||++.++++|..+|..+....++++||||||+||||||+++|+  .+..+|+..+|+..   ...     
T Consensus       177 ~~~~~~~~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~--~l~~~F~g~vfv~~~~v~~~~~~~~  254 (1153)
T PLN03210        177 LTPSNDFEDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFS--RLSRQFQSSVFIDRAFISKSMEIYS  254 (1153)
T ss_pred             cccCcccccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHH--HHhhcCCeEEEeeccccccchhhcc
Confidence            34455678899999999999999976667789999999999999999999999  78889999888742   111     


Q ss_pred             ------CC-HHHHHHHHHHHhCCCCCCcccccccHHHHHHHHHHHhcCCcEEEEeeCC
Q 045087          107 ------CY-ADQILDIIIKFLMPSSRLSEIKDKNYEMKKIILHEYLMTKRYLIVIDDV  157 (157)
Q Consensus       107 ------~~-~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdV  157 (157)
                            +. ...+...++..+.....   .....    ...+++.|.++|+|||||||
T Consensus       255 ~~~~~~~~~~~~l~~~~l~~il~~~~---~~~~~----~~~~~~~L~~krvLLVLDdv  305 (1153)
T PLN03210        255 SANPDDYNMKLHLQRAFLSEILDKKD---IKIYH----LGAMEERLKHRKVLIFIDDL  305 (1153)
T ss_pred             cccccccchhHHHHHHHHHHHhCCCC---cccCC----HHHHHHHHhCCeEEEEEeCC
Confidence                  01 12344555555544322   11111    24577889999999999997

syringae 6; Provisional

>PRK00411 cdc6 cell division control protein 6; Reviewed

Probab=99.43  E-value=2.4e-12  Score=102.25  Aligned_cols=119  Identities=14%  Similarity=0.149  Sum_probs=88.2

Q ss_pred             CcccCCCCCCccccHHHHHHHHHHHhcC--CCCceEEEEEeCCCCcHHHHHHHHhcCccccccc--CeeEEEEcCCCCCH
Q 045087           34 GISSSSKSRDTVGLDDRMEELLDLLIEG--PPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYF--DCHAWVQEPYTCYA  109 (157)
Q Consensus        34 ~~~~~~~~~~~vGr~~~~~~l~~~L~~~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F--~~~~wv~~~~~~~~  109 (157)
                      ...+...++.++||++++++|...|...  ......+.|+|++|+|||++++.+++  ......  -..+++++....+.
T Consensus        22 ~l~~~~~P~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~--~l~~~~~~~~~v~in~~~~~~~   99 (394)
T PRK00411         22 VLEPDYVPENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFE--ELEEIAVKVVYVYINCQIDRTR   99 (394)
T ss_pred             hCCCCCcCCCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHH--HHHHhcCCcEEEEEECCcCCCH
Confidence            3444556788999999999999998442  23345678999999999999999998  343322  34567777777788


Q ss_pred             HHHHHHHHHHhCCC-CCCcccccccHHHHHHHHHHHhc--CCcEEEEeeCC
Q 045087          110 DQILDIIIKFLMPS-SRLSEIKDKNYEMKKIILHEYLM--TKRYLIVIDDV  157 (157)
Q Consensus       110 ~~~l~~i~~~l~~~-~~~~~~~~~~~~~~~~~l~~~L~--~kr~LlVlDdV  157 (157)
                      ..++..|+.++... .+   ....+.+++...+.+.+.  ++.++||||++
T Consensus       100 ~~~~~~i~~~l~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~viviDE~  147 (394)
T PRK00411        100 YAIFSEIARQLFGHPPP---SSGLSFDELFDKIAEYLDERDRVLIVALDDI  147 (394)
T ss_pred             HHHHHHHHHHhcCCCCC---CCCCCHHHHHHHHHHHHHhcCCEEEEEECCH
Confidence            89999999999762 22   133456778888888875  45689999985

>TIGR02928 orc1/cdc6 family replication initiation protein

Probab=99.43  E-value=3.3e-12  Score=100.42  Aligned_cols=120  Identities=18%  Similarity=0.127  Sum_probs=85.4

Q ss_pred             cccCCCCCCccccHHHHHHHHHHHhc--CCCCceEEEEEeCCCCcHHHHHHHHhcCccccccc------CeeEEEEcCCC
Q 045087           35 ISSSSKSRDTVGLDDRMEELLDLLIE--GPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYF------DCHAWVQEPYT  106 (157)
Q Consensus        35 ~~~~~~~~~~vGr~~~~~~l~~~L~~--~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F------~~~~wv~~~~~  106 (157)
                      ..+...++.++||++++++|...|..  .......+.|+|++|+|||++++.++++  +....      -..+|+++...
T Consensus         8 l~~~~~p~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~--l~~~~~~~~~~~~~v~in~~~~   85 (365)
T TIGR02928         8 LEPDYVPDRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKE--LEEAAEDRDVRVVTVYVNCQIL   85 (365)
T ss_pred             CCCCCCCCCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHH--HHHHhhccCCceEEEEEECCCC
Confidence            34555667899999999999999864  2234457899999999999999999983  32211      13567787777


Q ss_pred             CCHHHHHHHHHHHhCC-CCCCcccccccHHHHHHHHHHHhc--CCcEEEEeeCC
Q 045087          107 CYADQILDIIIKFLMP-SSRLSEIKDKNYEMKKIILHEYLM--TKRYLIVIDDV  157 (157)
Q Consensus       107 ~~~~~~l~~i~~~l~~-~~~~~~~~~~~~~~~~~~l~~~L~--~kr~LlVlDdV  157 (157)
                      .+...++..|+.++.. ....+ ....+..++...+.+.+.  +++++||||++
T Consensus        86 ~~~~~~~~~i~~~l~~~~~~~~-~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~  138 (365)
T TIGR02928        86 DTLYQVLVELANQLRGSGEEVP-TTGLSTSEVFRRLYKELNERGDSLIIVLDEI  138 (365)
T ss_pred             CCHHHHHHHHHHHHhhcCCCCC-CCCCCHHHHHHHHHHHHHhcCCeEEEEECch
Confidence            7888999999999952 11111 123345666777777763  56789999985

Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.

>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A

Probab=99.21  E-value=5.2e-11  Score=84.72  Aligned_cols=50  Identities=20%  Similarity=0.237  Sum_probs=34.0

Q ss_pred             CccccHHHHHHHHHHHh-cCCCCceEEEEEeCCCCcHHHHHHHHhcCcccccc
Q 045087           43 DTVGLDDRMEELLDLLI-EGPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHY   94 (157)
Q Consensus        43 ~~vGr~~~~~~l~~~L~-~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~   94 (157)
                      .|+||++++++|...|. ......+.+.|+|.+|+|||+|.++++.  .+..+
T Consensus         1 ~fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~--~~~~~   51 (185)
T PF13191_consen    1 QFVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLD--RLAER   51 (185)
T ss_dssp             --TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHH--HHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHH--HHHhc
Confidence            48999999999999994 3334568999999999999999999988  45444

>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B

Probab=99.17  E-value=8.7e-11  Score=79.28  Aligned_cols=87  Identities=17%  Similarity=0.172  Sum_probs=64.9

Q ss_pred             ceEEEEEeCCCCcHHHHHHHHhcCcccccc-----cCeeEEEEcCCCCCHHHHHHHHHHHhCCCCCCcccccccHHHHHH
Q 045087           65 LSAVTILDSIGLDKTAFAAEAYSSNYMKHY-----FDCHAWVQEPYTCYADQILDIIIKFLMPSSRLSEIKDKNYEMKKI  139 (157)
Q Consensus        65 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-----F~~~~wv~~~~~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~  139 (157)
                      .+.+.|+|.+|+|||+++..+.+  .....     -...+|+.++...+...+...|+.+++....    ...+..++.+
T Consensus         4 ~~~~~i~G~~G~GKT~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~----~~~~~~~l~~   77 (131)
T PF13401_consen    4 QRILVISGPPGSGKTTLIKRLAR--QLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLK----SRQTSDELRS   77 (131)
T ss_dssp             ---EEEEE-TTSSHHHHHHHHHH--HHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSS----STS-HHHHHH
T ss_pred             CcccEEEcCCCCCHHHHHHHHHH--HhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCcccc----ccCCHHHHHH
Confidence            56889999999999999999988  33321     2346688888777999999999999998654    2456778888


Q ss_pred             HHHHHhcCCcE-EEEeeCC
Q 045087          140 ILHEYLMTKRY-LIVIDDV  157 (157)
Q Consensus       140 ~l~~~L~~kr~-LlVlDdV  157 (157)
                      .+.+.+...+. +||+||+
T Consensus        78 ~~~~~l~~~~~~~lviDe~   96 (131)
T PF13401_consen   78 LLIDALDRRRVVLLVIDEA   96 (131)
T ss_dssp             HHHHHHHHCTEEEEEEETT
T ss_pred             HHHHHHHhcCCeEEEEeCh
Confidence            88888876654 9999985

>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]

Probab=99.14  E-value=9.4e-10  Score=86.78  Aligned_cols=114  Identities=15%  Similarity=0.121  Sum_probs=89.1

Q ss_pred             CCCCCCccccHHHHHHHHHHHhc--CCCCceEEEEEeCCCCcHHHHHHHHhcCcccccccC-e-eEEEEcCCCCCHHHHH
Q 045087           38 SSKSRDTVGLDDRMEELLDLLIE--GPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFD-C-HAWVQEPYTCYADQIL  113 (157)
Q Consensus        38 ~~~~~~~vGr~~~~~~l~~~L~~--~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~-~-~~wv~~~~~~~~~~~l  113 (157)
                      ...++.+.+|+.++++|...|..  .+....-+.|+|.+|+|||+.++.+++  ++..... . .+++++-...++.+++
T Consensus        13 ~~iP~~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~--~l~~~~~~~~~~yINc~~~~t~~~i~   90 (366)
T COG1474          13 DYIPEELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVME--ELEESSANVEVVYINCLELRTPYQVL   90 (366)
T ss_pred             CCCcccccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHH--HHHhhhccCceEEEeeeeCCCHHHHH
Confidence            34455699999999999988854  222233489999999999999999999  5655432 2 6899999999999999


Q ss_pred             HHHHHHhCCCCCCcccccccHHHHHHHHHHHhc--CCcEEEEeeCC
Q 045087          114 DIIIKFLMPSSRLSEIKDKNYEMKKIILHEYLM--TKRYLIVIDDV  157 (157)
Q Consensus       114 ~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~--~kr~LlVlDdV  157 (157)
                      ..|+.+++...    ...++..+..+.+.+.+.  ++.+++|||++
T Consensus        91 ~~i~~~~~~~p----~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEi  132 (366)
T COG1474          91 SKILNKLGKVP----LTGDSSLEILKRLYDNLSKKGKTVIVILDEV  132 (366)
T ss_pred             HHHHHHcCCCC----CCCCchHHHHHHHHHHHHhcCCeEEEEEcch
Confidence            99999998422    245667888888888885  47899999985

>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase

Probab=99.12  E-value=2.3e-10  Score=85.85  Aligned_cols=92  Identities=11%  Similarity=-0.082  Sum_probs=60.4

Q ss_pred             ceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCCC--CCHHHHHHHHHHHhCCCCC-Ccc-cccccHHHHHHH
Q 045087           65 LSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPYT--CYADQILDIIIKFLMPSSR-LSE-IKDKNYEMKKII  140 (157)
Q Consensus        65 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~--~~~~~~l~~i~~~l~~~~~-~~~-~~~~~~~~~~~~  140 (157)
                      ...+.|+|.+|+|||||++.+|++.... +|+..+|+.+...  ++..++++.+...+..... .+. ....-.......
T Consensus        16 Gqr~~I~G~~G~GKTTLlr~I~n~l~~~-~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~~~   94 (249)
T cd01128          16 GQRGLIVAPPKAGKTTLLQSIANAITKN-HPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVLEK   94 (249)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhccccc-cCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHHHH
Confidence            4588999999999999999999964444 8999999986554  7899999998443322211 000 001111122333


Q ss_pred             HHHH-hcCCcEEEEeeCC
Q 045087          141 LHEY-LMTKRYLIVIDDV  157 (157)
Q Consensus       141 l~~~-L~~kr~LlVlDdV  157 (157)
                      ...+ -.+++++|++|++
T Consensus        95 a~~~~~~G~~vll~iDei  112 (249)
T cd01128          95 AKRLVEHGKDVVILLDSI  112 (249)
T ss_pred             HHHHHHCCCCEEEEEECH
Confidence            3322 2589999999985

It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.

>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily

Probab=99.11  E-value=2.4e-09  Score=80.78  Aligned_cols=85  Identities=15%  Similarity=0.155  Sum_probs=55.2

Q ss_pred             ceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCCCCCHHHHHHHHHHHhCCCCCCcccccccHHHHHHHHHHH
Q 045087           65 LSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPYTCYADQILDIIIKFLMPSSRLSEIKDKNYEMKKIILHEY  144 (157)
Q Consensus        65 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~  144 (157)
                      ...+.|+|.+|+|||||++.+++.... ..+ ..+|+. ....+..+++..|+..++.+..     ..+...+...+..+
T Consensus        43 ~~~~~l~G~~G~GKTtl~~~l~~~l~~-~~~-~~~~~~-~~~~~~~~~l~~i~~~lG~~~~-----~~~~~~~~~~l~~~  114 (269)
T TIGR03015        43 EGFILITGEVGAGKTTLIRNLLKRLDQ-ERV-VAAKLV-NTRVDAEDLLRMVAADFGLETE-----GRDKAALLRELEDF  114 (269)
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHHhcCC-CCe-EEeeee-CCCCCHHHHHHHHHHHcCCCCC-----CCCHHHHHHHHHHH
Confidence            458899999999999999999984321 111 122332 3345778899999988866432     12223333333332


Q ss_pred             -----hcCCcEEEEeeCC
Q 045087          145 -----LMTKRYLIVIDDV  157 (157)
Q Consensus       145 -----L~~kr~LlVlDdV  157 (157)
                           ..+++++||+||+
T Consensus       115 l~~~~~~~~~~vliiDe~  132 (269)
T TIGR03015       115 LIEQFAAGKRALLVVDEA  132 (269)
T ss_pred             HHHHHhCCCCeEEEEECc
Confidence                 2678899999985

Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.

>PTZ00202 tuzin; Provisional

Probab=99.10  E-value=5.1e-09  Score=83.68  Aligned_cols=104  Identities=14%  Similarity=0.061  Sum_probs=73.8

Q ss_pred             cCCCCCCccccHHHHHHHHHHHhcCC-CCceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCCCCCHHHHHHH
Q 045087           37 SSSKSRDTVGLDDRMEELLDLLIEGP-PQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPYTCYADQILDI  115 (157)
Q Consensus        37 ~~~~~~~~vGr~~~~~~l~~~L~~~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~l~~  115 (157)
                      .+++...|+||+.++.+|...|...+ ...+++.|+|++|+|||||++.+.+.  ..  +  .+++....  +..+++..
T Consensus       257 lPa~~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~--l~--~--~qL~vNpr--g~eElLr~  328 (550)
T PTZ00202        257 APAVIRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRK--EG--M--PAVFVDVR--GTEDTLRS  328 (550)
T ss_pred             CCCCccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhc--CC--c--eEEEECCC--CHHHHHHH
Confidence            34567899999999999999986432 34568999999999999999999873  32  1  23333333  67999999


Q ss_pred             HHHHhCCCCCCcccccccHHHHHHHHHHHh-----c-CCcEEEEe
Q 045087          116 IIKFLMPSSRLSEIKDKNYEMKKIILHEYL-----M-TKRYLIVI  154 (157)
Q Consensus       116 i~~~l~~~~~~~~~~~~~~~~~~~~l~~~L-----~-~kr~LlVl  154 (157)
                      ++.+|+.+..      ....++...|.+.|     . +++.+||+
T Consensus       329 LL~ALGV~p~------~~k~dLLrqIqeaLl~~~~e~GrtPVLII  367 (550)
T PTZ00202        329 VVKALGVPNV------EACGDLLDFISEACRRAKKMNGETPLLVL  367 (550)
T ss_pred             HHHHcCCCCc------ccHHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence            9999997332      22344555555544     2 67777776

>PTZ00112 origin recognition complex 1 protein; Provisional

Probab=99.02  E-value=5.4e-09  Score=89.29  Aligned_cols=117  Identities=12%  Similarity=0.047  Sum_probs=82.1

Q ss_pred             ccCCCCCCccccHHHHHHHHHHHhc---CCCCceEEEEEeCCCCcHHHHHHHHhcCccccc-----ccC--eeEEEEcCC
Q 045087           36 SSSSKSRDTVGLDDRMEELLDLLIE---GPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKH-----YFD--CHAWVQEPY  105 (157)
Q Consensus        36 ~~~~~~~~~vGr~~~~~~l~~~L~~---~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-----~F~--~~~wv~~~~  105 (157)
                      .+...++.+.||++++++|...|..   +.....++.|+|.+|.|||++++.|.+  ++..     .+.  ..++|.+..
T Consensus       749 ~~DYVPD~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLr--ELqeeaeqk~lp~f~vVYINCm~  826 (1164)
T PTZ00112        749 QLDVVPKYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQ--LLQHKTKQKLLPSFNVFEINGMN  826 (1164)
T ss_pred             CcccCCCcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHH--HHHHHHhhccCCCceEEEEeCCc
Confidence            4445668999999999999988854   233345778999999999999999987  3321     111  256777777


Q ss_pred             CCCHHHHHHHHHHHhCCCCCCcccccccHHHHHHHHHHHhc---CCcEEEEeeCC
Q 045087          106 TCYADQILDIIIKFLMPSSRLSEIKDKNYEMKKIILHEYLM---TKRYLIVIDDV  157 (157)
Q Consensus       106 ~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~---~kr~LlVlDdV  157 (157)
                      -.++..++..|+.+|....+   ....+..+.+..+...+.   ....+||||+|
T Consensus       827 Lstp~sIYqvI~qqL~g~~P---~~GlsS~evLerLF~~L~k~~r~v~IIILDEI  878 (1164)
T PTZ00112        827 VVHPNAAYQVLYKQLFNKKP---PNALNSFKILDRLFNQNKKDNRNVSILIIDEI  878 (1164)
T ss_pred             cCCHHHHHHHHHHHHcCCCC---CccccHHHHHHHHHhhhhcccccceEEEeehH
Confidence            67888999999999965433   233444556666666552   22368999986

>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP

Probab=99.00  E-value=1.3e-09  Score=79.92  Aligned_cols=58  Identities=21%  Similarity=0.227  Sum_probs=40.6

Q ss_pred             ccccHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCC
Q 045087           44 TVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPY  105 (157)
Q Consensus        44 ~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~  105 (157)
                      |+||++++++|.+++..+.  ...+.|+|+.|+|||+|++.+.+  ..++.-...+|+....
T Consensus         1 F~gR~~el~~l~~~l~~~~--~~~~~l~G~rg~GKTsLl~~~~~--~~~~~~~~~~y~~~~~   58 (234)
T PF01637_consen    1 FFGREKELEKLKELLESGP--SQHILLYGPRGSGKTSLLKEFIN--ELKEKGYKVVYIDFLE   58 (234)
T ss_dssp             S-S-HHHHHHHHHCHHH----SSEEEEEESTTSSHHHHHHHHHH--HCT--EECCCHHCCTT
T ss_pred             CCCHHHHHHHHHHHHHhhc--CcEEEEEcCCcCCHHHHHHHHHH--HhhhcCCcEEEEeccc
Confidence            7999999999999887653  56899999999999999999988  4433222344444433

; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.

>PRK09376 rho transcription termination factor Rho; Provisional

Probab=98.95  E-value=1.4e-09  Score=85.79  Aligned_cols=89  Identities=12%  Similarity=0.000  Sum_probs=59.2

Q ss_pred             CceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCCCC--CHHHHHHHHHHHhCCCCCCcccccccHH------
Q 045087           64 QLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPYTC--YADQILDIIIKFLMPSSRLSEIKDKNYE------  135 (157)
Q Consensus        64 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~--~~~~~l~~i~~~l~~~~~~~~~~~~~~~------  135 (157)
                      +.....|+|++|+||||||+.+|++.... +|++.+|+.+.+.+  ...++++.++..+-.+.    .+.....      
T Consensus       168 kGQR~lIvgppGvGKTTLaK~Ian~I~~n-hFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st----~d~~~~~~~~~a~  242 (416)
T PRK09376        168 KGQRGLIVAPPKAGKTVLLQNIANSITTN-HPEVHLIVLLIDERPEEVTDMQRSVKGEVVAST----FDEPAERHVQVAE  242 (416)
T ss_pred             cCceEEEeCCCCCChhHHHHHHHHHHHhh-cCCeEEEEEEeCCchhHHHHHHHHhcCcEEEEC----CCCCHHHHHHHHH
Confidence            34578899999999999999999954333 89999999987776  67778777763222211    1111111      


Q ss_pred             HHHHHHHHH-hcCCcEEEEeeCC
Q 045087          136 MKKIILHEY-LMTKRYLIVIDDV  157 (157)
Q Consensus       136 ~~~~~l~~~-L~~kr~LlVlDdV  157 (157)
                      .....-..+ ..++++||++|++
T Consensus       243 ~~ie~Ae~~~e~G~dVlL~iDsI  265 (416)
T PRK09376        243 MVIEKAKRLVEHGKDVVILLDSI  265 (416)
T ss_pred             HHHHHHHHHHHcCCCEEEEEECh
Confidence            111221222 3689999999985

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

Probab=98.88  E-value=2.6e-08  Score=67.30  Aligned_cols=58  Identities=16%  Similarity=0.110  Sum_probs=42.0

Q ss_pred             cccHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCCC
Q 045087           45 VGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPYT  106 (157)
Q Consensus        45 vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~  106 (157)
                      +|++..+.++...+...  ....+.|+|.+|+|||++++.+++  .....-...+++.....
T Consensus         1 ~~~~~~~~~i~~~~~~~--~~~~v~i~G~~G~GKT~l~~~i~~--~~~~~~~~v~~~~~~~~   58 (151)
T cd00009           1 VGQEEAIEALREALELP--PPKNLLLYGPPGTGKTTLARAIAN--ELFRPGAPFLYLNASDL   58 (151)
T ss_pred             CchHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHH--HhhcCCCCeEEEehhhh
Confidence            47888889998888664  345888999999999999999998  33222234555655443

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.

>TIGR00767 rho transcription termination factor Rho

Probab=98.83  E-value=1.3e-08  Score=80.67  Aligned_cols=93  Identities=11%  Similarity=-0.059  Sum_probs=60.4

Q ss_pred             CceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCCC--CCHHHHHHHHHHHhCCCCCC-cccc-cccHHHHHH
Q 045087           64 QLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPYT--CYADQILDIIIKFLMPSSRL-SEIK-DKNYEMKKI  139 (157)
Q Consensus        64 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~--~~~~~~l~~i~~~l~~~~~~-~~~~-~~~~~~~~~  139 (157)
                      ....++|+|.+|+|||||++.+++.... ++|+..+|+.+.+.  .+..++++.++..+-..... +... ..-.+...+
T Consensus       167 ~Gq~~~IvG~~g~GKTtL~~~i~~~I~~-nhfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~e  245 (415)
T TIGR00767       167 KGQRGLIVAPPKAGKTVLLQKIAQAITR-NHPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVIE  245 (415)
T ss_pred             CCCEEEEECCCCCChhHHHHHHHHhhcc-cCCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHHH
Confidence            3457899999999999999999994322 36999999988754  78899999986544332210 0000 000112222


Q ss_pred             HHHHH-hcCCcEEEEeeCC
Q 045087          140 ILHEY-LMTKRYLIVIDDV  157 (157)
Q Consensus       140 ~l~~~-L~~kr~LlVlDdV  157 (157)
                      ....+ -.+++++|++|++
T Consensus       246 ~Ae~~~~~GkdVVLlIDEi  264 (415)
T TIGR00767       246 KAKRLVEHKKDVVILLDSI  264 (415)
T ss_pred             HHHHHHHcCCCeEEEEECh
Confidence            22222 2689999999985

Members of this family differ in the specificity of RNA binding.

>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional

Probab=98.79  E-value=6.6e-08  Score=77.75  Aligned_cols=71  Identities=14%  Similarity=-0.001  Sum_probs=56.6

Q ss_pred             CCCccccHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCCCCCHHHHHHH
Q 045087           41 SRDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPYTCYADQILDI  115 (157)
Q Consensus        41 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~l~~  115 (157)
                      ..++++.+..++.+...|...    +.+.++|++|+|||++|+.+++.......|....|+.+.+.++..+++..
T Consensus       174 l~d~~i~e~~le~l~~~L~~~----~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G  244 (459)
T PRK11331        174 LNDLFIPETTIETILKRLTIK----KNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQG  244 (459)
T ss_pred             hhcccCCHHHHHHHHHHHhcC----CCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcc
Confidence            356888899999999888764    36888999999999999999885433446777889999988887776643

>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]

Probab=98.76  E-value=1.2e-07  Score=74.27  Aligned_cols=112  Identities=13%  Similarity=0.150  Sum_probs=81.1

Q ss_pred             CCCccccHHHHHHHHHHHhcCCCC-ceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCCCCCHHHHHHHHHHH
Q 045087           41 SRDTVGLDDRMEELLDLLIEGPPQ-LSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPYTCYADQILDIIIKF  119 (157)
Q Consensus        41 ~~~~vGr~~~~~~l~~~L~~~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~l~~i~~~  119 (157)
                      .+.+.+|+.++..|..++...+.. ...+.|+|-.|.|||.+.+.+++..  .   ...+|+++-..++...++..|+.+
T Consensus         5 ~~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~--n---~~~vw~n~~ecft~~~lle~IL~~   79 (438)
T KOG2543|consen    5 EPNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKL--N---LENVWLNCVECFTYAILLEKILNK   79 (438)
T ss_pred             ccCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhc--C---CcceeeehHHhccHHHHHHHHHHH
Confidence            467899999999999999776543 3455899999999999999999944  2   246899999999999999999999


Q ss_pred             hCC-CCCCccccc--ccHHHHHHHHHH--Hhc--CCcEEEEeeCC
Q 045087          120 LMP-SSRLSEIKD--KNYEMKKIILHE--YLM--TKRYLIVIDDV  157 (157)
Q Consensus       120 l~~-~~~~~~~~~--~~~~~~~~~l~~--~L~--~kr~LlVlDdV  157 (157)
                      ... ..+....+.  .+....+..+.+  ...  ++.++||||++
T Consensus        80 ~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDna  124 (438)
T KOG2543|consen   80 SQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNA  124 (438)
T ss_pred             hccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCH
Confidence            963 222111111  233344444444  222  45899999985

>PF05729 NACHT: NACHT domain

Probab=98.63  E-value=7.5e-08  Score=67.00  Aligned_cols=83  Identities=16%  Similarity=0.093  Sum_probs=46.2

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhcCcccccc----cCeeEEEEcCCCCCH---HHHHHHHHHHhCCCCCCcccccccHHHHH
Q 045087           66 SAVTILDSIGLDKTAFAAEAYSSNYMKHY----FDCHAWVQEPYTCYA---DQILDIIIKFLMPSSRLSEIKDKNYEMKK  138 (157)
Q Consensus        66 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----F~~~~wv~~~~~~~~---~~~l~~i~~~l~~~~~~~~~~~~~~~~~~  138 (157)
                      +++.|+|.+|+||||+++.++.+..-...    +...+|+........   ..+...|..+.....       .......
T Consensus         1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~-------~~~~~~~   73 (166)
T PF05729_consen    1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESI-------APIEELL   73 (166)
T ss_pred             CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccch-------hhhHHHH
Confidence            47889999999999999999874322222    334556655443222   134444433333221       1111111


Q ss_pred             HHHHHHhcCCcEEEEeeCC
Q 045087          139 IILHEYLMTKRYLIVIDDV  157 (157)
Q Consensus       139 ~~l~~~L~~kr~LlVlDdV  157 (157)
                      ..+.  -..+++|||||++
T Consensus        74 ~~~~--~~~~~~llilDgl   90 (166)
T PF05729_consen   74 QELL--EKNKRVLLILDGL   90 (166)
T ss_pred             HHHH--HcCCceEEEEech
Confidence            1111  2578899999974

>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair

Probab=98.56  E-value=1.7e-07  Score=68.98  Aligned_cols=54  Identities=19%  Similarity=0.166  Sum_probs=38.0

Q ss_pred             CCCCccccHHHHHHHHHHHhc---CCCCceEEEEEeCCCCcHHHHHHHHhcCccccccc
Q 045087           40 KSRDTVGLDDRMEELLDLLIE---GPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYF   95 (157)
Q Consensus        40 ~~~~~vGr~~~~~~l~~~L~~---~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F   95 (157)
                      .-++|+|.++-++.+.-++..   .......+.+||++|+||||||..+.+  +....|
T Consensus        22 ~L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~--e~~~~~   78 (233)
T PF05496_consen   22 SLDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIAN--ELGVNF   78 (233)
T ss_dssp             SCCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHH--HCT--E
T ss_pred             CHHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHh--ccCCCe
Confidence            457899999999988766642   234577899999999999999999999  565555

Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.

>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit

Probab=98.55  E-value=2.9e-07  Score=70.80  Aligned_cols=46  Identities=20%  Similarity=0.247  Sum_probs=38.6

Q ss_pred             CCccccHHHHHHHHHHHhcC---CCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087           42 RDTVGLDDRMEELLDLLIEG---PPQLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        42 ~~~vGr~~~~~~l~~~L~~~---~~~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      .+|+|+++.+++|..++...   ......+.++|++|+|||+||+.+.+
T Consensus         4 ~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~   52 (305)
T TIGR00635         4 AEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIAN   52 (305)
T ss_pred             HHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHH
Confidence            57999999999999988631   23355688999999999999999988

RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.

>PRK04841 transcriptional regulator MalT; Provisional

Probab=98.55  E-value=1.3e-06  Score=76.14  Aligned_cols=107  Identities=16%  Similarity=0.143  Sum_probs=68.5

Q ss_pred             CCCCccccHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCC-CCCHHHHHHHHHH
Q 045087           40 KSRDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPY-TCYADQILDIIIK  118 (157)
Q Consensus        40 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~-~~~~~~~l~~i~~  118 (157)
                      ....++-|..-.+.|    ... ...+++.|.|++|.||||++...++.      +..++|+++.. +.++..+...++.
T Consensus        12 ~~~~~~~R~rl~~~l----~~~-~~~~~~~v~apaG~GKTtl~~~~~~~------~~~~~w~~l~~~d~~~~~f~~~l~~   80 (903)
T PRK04841         12 RLHNTVVRERLLAKL----SGA-NNYRLVLVTSPAGYGKTTLISQWAAG------KNNLGWYSLDESDNQPERFASYLIA   80 (903)
T ss_pred             CccccCcchHHHHHH----hcc-cCCCeEEEECCCCCCHHHHHHHHHHh------CCCeEEEecCcccCCHHHHHHHHHH
Confidence            345667776555444    332 35789999999999999999987762      23688999864 4567778888888


Q ss_pred             HhCCCCCC--cc-------cccccHHHHHHHHHHHhc--CCcEEEEeeCC
Q 045087          119 FLMPSSRL--SE-------IKDKNYEMKKIILHEYLM--TKRYLIVIDDV  157 (157)
Q Consensus       119 ~l~~~~~~--~~-------~~~~~~~~~~~~l~~~L~--~kr~LlVlDdV  157 (157)
                      .+......  +.       ....+...+...+...|.  +.+++|||||+
T Consensus        81 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~  130 (903)
T PRK04841         81 ALQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDY  130 (903)
T ss_pred             HHHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCc
Confidence            77531110  00       111223344444444443  67899999996

>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins

Probab=98.53  E-value=2.6e-06  Score=65.25  Aligned_cols=110  Identities=15%  Similarity=0.097  Sum_probs=75.4

Q ss_pred             CCccccHH---HHHHHHHHHhcC-CCCceEEEEEeCCCCcHHHHHHHHhcCccccccc------CeeEEEEcCCCCCHHH
Q 045087           42 RDTVGLDD---RMEELLDLLIEG-PPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYF------DCHAWVQEPYTCYADQ  111 (157)
Q Consensus        42 ~~~vGr~~---~~~~l~~~L~~~-~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F------~~~~wv~~~~~~~~~~  111 (157)
                      +..+|...   -++.|.++|... ..+.+-+.|+|.+|.|||++++++.+.  .-..+      -.++.+..+..++...
T Consensus        34 ~rWIgY~~A~~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~--hp~~~d~~~~~~PVv~vq~P~~p~~~~  111 (302)
T PF05621_consen   34 DRWIGYPRAKEALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRL--HPPQSDEDAERIPVVYVQMPPEPDERR  111 (302)
T ss_pred             CCeecCHHHHHHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHH--CCCCCCCCCccccEEEEecCCCCChHH
Confidence            45556433   455566666543 356678999999999999999999762  11112      2456777889999999


Q ss_pred             HHHHHHHHhCCCCCCcccccccHHHHHHHHHHHhcC-CcEEEEeeCC
Q 045087          112 ILDIIIKFLMPSSRLSEIKDKNYEMKKIILHEYLMT-KRYLIVIDDV  157 (157)
Q Consensus       112 ~l~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~-kr~LlVlDdV  157 (157)
                      ++..|+.+++.+..    ...+...+...+...|+. +--+||+|++
T Consensus       112 ~Y~~IL~~lgaP~~----~~~~~~~~~~~~~~llr~~~vrmLIIDE~  154 (302)
T PF05621_consen  112 FYSAILEALGAPYR----PRDRVAKLEQQVLRLLRRLGVRMLIIDEF  154 (302)
T ss_pred             HHHHHHHHhCcccC----CCCCHHHHHHHHHHHHHHcCCcEEEeech
Confidence            99999999998764    334445555555555543 3458888875

TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].

>PRK04195 replication factor C large subunit; Provisional

Probab=98.53  E-value=5.6e-07  Score=73.67  Aligned_cols=48  Identities=21%  Similarity=0.225  Sum_probs=40.4

Q ss_pred             CCCccccHHHHHHHHHHHhcC--CCCceEEEEEeCCCCcHHHHHHHHhcC
Q 045087           41 SRDTVGLDDRMEELLDLLIEG--PPQLSAVTILDSIGLDKTAFAAEAYSS   88 (157)
Q Consensus        41 ~~~~vGr~~~~~~l~~~L~~~--~~~~~vi~I~G~gGiGKTtLa~~v~~~   88 (157)
                      .++++|.++.+++|.+|+..-  ....+.+.|+|++|+||||+|+.++++
T Consensus        13 l~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~e   62 (482)
T PRK04195         13 LSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALAND   62 (482)
T ss_pred             HHHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence            467999999999999998642  223678999999999999999999883

>PRK09361 radB DNA repair and recombination protein RadB; Provisional

Probab=98.52  E-value=7.5e-07  Score=65.71  Aligned_cols=102  Identities=15%  Similarity=0.025  Sum_probs=59.8

Q ss_pred             HHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCCCCCHHHHHHHHHHH----hCCCCCCc
Q 045087           52 EELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPYTCYADQILDIIIKF----LMPSSRLS  127 (157)
Q Consensus        52 ~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~l~~i~~~----l~~~~~~~  127 (157)
                      ..|-++|..+-....++.|+|.+|+|||++|.+++.  .....-..++|++.. .++...+. +++..    +..+....
T Consensus        10 ~~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~la~--~~~~~~~~v~yi~~e-~~~~~r~~-~~~~~~~~~~~~~~~~~   85 (225)
T PRK09361         10 KMLDELLGGGFERGTITQIYGPPGSGKTNICLQLAV--EAAKNGKKVIYIDTE-GLSPERFK-QIAGEDFEELLSNIIIF   85 (225)
T ss_pred             HHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHH--HHHHCCCeEEEEECC-CCCHHHHH-HHHhhChHhHhhCeEEE
Confidence            345555555545678999999999999999988876  333334667899887 56655443 23222    11100000


Q ss_pred             c-cccccHHHHHHHHHHHhcCCcEEEEeeCC
Q 045087          128 E-IKDKNYEMKKIILHEYLMTKRYLIVIDDV  157 (157)
Q Consensus       128 ~-~~~~~~~~~~~~l~~~L~~kr~LlVlDdV  157 (157)
                      . .......+.+..+..++..+.-++|+|.+
T Consensus        86 ~~~~~~~~~~~i~~~~~~~~~~~~lvVIDsi  116 (225)
T PRK09361         86 EPSSFEEQSEAIRKAEKLAKENVGLIVLDSA  116 (225)
T ss_pred             eCCCHHHHHHHHHHHHHHHHhcccEEEEeCc
Confidence            0 11112233445555555567779999975

>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed

Probab=98.52  E-value=6.2e-07  Score=69.92  Aligned_cols=48  Identities=21%  Similarity=0.212  Sum_probs=40.0

Q ss_pred             CCCCccccHHHHHHHHHHHhc---CCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087           40 KSRDTVGLDDRMEELLDLLIE---GPPQLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        40 ~~~~~vGr~~~~~~l~~~L~~---~~~~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ...+|+|+++.++.|..++..   .......+.++|++|+|||+||+.+++
T Consensus        23 ~~~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~   73 (328)
T PRK00080         23 SLDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIAN   73 (328)
T ss_pred             CHHHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHH
Confidence            456799999999999888853   223456788999999999999999998

>PRK13342 recombination factor protein RarA; Reviewed

Probab=98.49  E-value=3.2e-07  Score=73.68  Aligned_cols=45  Identities=22%  Similarity=0.313  Sum_probs=36.7

Q ss_pred             CCCccccHHHHHH---HHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087           41 SRDTVGLDDRMEE---LLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        41 ~~~~vGr~~~~~~---l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      .++++|++..+..   |.+++..+  ....+.++|++|+||||||+.+++
T Consensus        11 l~d~vGq~~~v~~~~~L~~~i~~~--~~~~ilL~GppGtGKTtLA~~ia~   58 (413)
T PRK13342         11 LDEVVGQEHLLGPGKPLRRMIEAG--RLSSMILWGPPGTGKTTLARIIAG   58 (413)
T ss_pred             HHHhcCcHHHhCcchHHHHHHHcC--CCceEEEECCCCCCHHHHHHHHHH
Confidence            4568999888766   77777654  355788899999999999999988

>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]

Probab=98.46  E-value=2.5e-06  Score=68.47  Aligned_cols=116  Identities=12%  Similarity=0.082  Sum_probs=81.9

Q ss_pred             CCCCCCccccHHHHHHHHHHHhcC--CCCceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCCCCCHHHHHHH
Q 045087           38 SSKSRDTVGLDDRMEELLDLLIEG--PPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPYTCYADQILDI  115 (157)
Q Consensus        38 ~~~~~~~vGr~~~~~~l~~~L~~~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~l~~  115 (157)
                      +..+..++||+.++..+.+|+...  ....+-+.|.|-+|.|||.+...++.+..-...--+.+++++-.-.....++..
T Consensus       146 t~~p~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~k  225 (529)
T KOG2227|consen  146 TAPPGTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFKK  225 (529)
T ss_pred             cCCCCCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHHH
Confidence            356788999999999999998652  345667888899999999999988884322111124567776665677888888


Q ss_pred             HHHHhCCCCCCcccccccHHHHHHHHHHHhcCCc--EEEEeeCC
Q 045087          116 IIKFLMPSSRLSEIKDKNYEMKKIILHEYLMTKR--YLIVIDDV  157 (157)
Q Consensus       116 i~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~kr--~LlVlDdV  157 (157)
                      |+..+.....    ......+....+..+..+.+  +|+|||+.
T Consensus       226 I~~~~~q~~~----s~~~~~~~~~~~~~h~~q~k~~~llVlDEm  265 (529)
T KOG2227|consen  226 IFSSLLQDLV----SPGTGMQHLEKFEKHTKQSKFMLLLVLDEM  265 (529)
T ss_pred             HHHHHHHHhc----CCchhHHHHHHHHHHHhcccceEEEEechh
Confidence            8888843221    22233677777777775544  89999963

>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response

Probab=98.45  E-value=3.3e-06  Score=62.18  Aligned_cols=103  Identities=17%  Similarity=0.131  Sum_probs=62.2

Q ss_pred             HHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhcCccccccc------CeeEEEEcCCCCCHHHHHHHHHHHhCCCCC
Q 045087           52 EELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYF------DCHAWVQEPYTCYADQILDIIIKFLMPSSR  125 (157)
Q Consensus        52 ~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F------~~~~wv~~~~~~~~~~~l~~i~~~l~~~~~  125 (157)
                      ..|-++|..+-....++.|+|.+|+|||+||..+...  ....-      ..++|++....++...+. .++........
T Consensus         6 ~~lD~~l~GG~~~g~v~~I~G~~GsGKT~l~~~ia~~--~~~~~~~~g~~~~v~yi~~e~~~~~~rl~-~~~~~~~~~~~   82 (226)
T cd01393           6 KALDELLGGGIPTGRITEIFGEFGSGKTQLCLQLAVE--AQLPGELGGLEGKVVYIDTEGAFRPERLV-QLAVRFGLDPE   82 (226)
T ss_pred             HHHHHHhCCCCcCCcEEEEeCCCCCChhHHHHHHHHH--hhcccccCCCcceEEEEecCCCCCHHHHH-HHHHHhccchh
Confidence            3444555444456779999999999999999888652  22222      456899887777765543 33333322110


Q ss_pred             -----CcccccccHHHHHHHHHHHhc----CCcEEEEeeCC
Q 045087          126 -----LSEIKDKNYEMKKIILHEYLM----TKRYLIVIDDV  157 (157)
Q Consensus       126 -----~~~~~~~~~~~~~~~l~~~L~----~kr~LlVlDdV  157 (157)
                           .--....+.+++...+...+.    .+.-|+|+|.+
T Consensus        83 ~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~lvVIDsi  123 (226)
T cd01393          83 EVLDNIYVARPYNGEQQLEIVEELERIMSSGRVDLVVVDSV  123 (226)
T ss_pred             hhhccEEEEeCCCHHHHHHHHHHHHHHhhcCCeeEEEEcCc
Confidence                 000223455666666666553    34569999975

RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=98.44  E-value=1.3e-06  Score=58.29  Aligned_cols=38  Identities=13%  Similarity=0.053  Sum_probs=27.0

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCC
Q 045087           66 SAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPY  105 (157)
Q Consensus        66 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~  105 (157)
                      ..+.|+|.+|+||||+++.++.  .........+++....
T Consensus         3 ~~~~l~G~~G~GKTtl~~~l~~--~~~~~~~~~~~~~~~~   40 (148)
T smart00382        3 EVILIVGPPGSGKTTLARALAR--ELGPPGGGVIYIDGED   40 (148)
T ss_pred             CEEEEECCCCCcHHHHHHHHHh--ccCCCCCCEEEECCEE
Confidence            5789999999999999999988  4443332344554443

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B

Probab=98.42  E-value=3e-06  Score=62.77  Aligned_cols=104  Identities=16%  Similarity=0.147  Sum_probs=60.4

Q ss_pred             HHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhcCcccccc----cCeeEEEEcCCCCCHHHHHHHHHHHhCCCCC-C-
Q 045087           53 ELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHY----FDCHAWVQEPYTCYADQILDIIIKFLMPSSR-L-  126 (157)
Q Consensus        53 ~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----F~~~~wv~~~~~~~~~~~l~~i~~~l~~~~~-~-  126 (157)
                      .|-.+|..+-....++.|+|.+|+|||+||..++........    ...++|++....++...+.+ ++........ . 
T Consensus         7 ~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~~-~~~~~~~~~~~~~   85 (235)
T cd01123           7 ALDELLGGGIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLVQ-IAERFGLDPEEVL   85 (235)
T ss_pred             hhHhhccCCCCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHHH-HHHHhccChHhHh
Confidence            344444444456789999999999999999888643222221    35788999888777655443 3333322110 0 


Q ss_pred             cc---ccccc---HHHHHHHHHHHhc-C-CcEEEEeeCC
Q 045087          127 SE---IKDKN---YEMKKIILHEYLM-T-KRYLIVIDDV  157 (157)
Q Consensus       127 ~~---~~~~~---~~~~~~~l~~~L~-~-kr~LlVlDdV  157 (157)
                      ..   ....+   ...++..+...+. . +--|||+|.+
T Consensus        86 ~~i~~~~~~~~~~l~~~l~~l~~~l~~~~~~~liVIDSi  124 (235)
T cd01123          86 DNIYVARAYNSDHQLQLLEELEAILIESSRIKLVIVDSV  124 (235)
T ss_pred             cCEEEEecCCHHHHHHHHHHHHHHHhhcCCeeEEEEeCc
Confidence            00   11122   2334455555553 3 5679999975

This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .

>PRK12402 replication factor C small subunit 2; Reviewed

Probab=98.40  E-value=1.6e-06  Score=67.35  Aligned_cols=45  Identities=22%  Similarity=0.195  Sum_probs=38.3

Q ss_pred             CCCccccHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087           41 SRDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        41 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ..+++|++..++.|.+++..+.  .+.+.++|++|+||||+|+.+.+
T Consensus        14 ~~~~~g~~~~~~~L~~~~~~~~--~~~lll~Gp~GtGKT~la~~~~~   58 (337)
T PRK12402         14 LEDILGQDEVVERLSRAVDSPN--LPHLLVQGPPGSGKTAAVRALAR   58 (337)
T ss_pred             HHHhcCCHHHHHHHHHHHhCCC--CceEEEECCCCCCHHHHHHHHHH
Confidence            3578999999999999887643  45688999999999999999877

>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]

Probab=98.40  E-value=9e-07  Score=69.77  Aligned_cols=51  Identities=20%  Similarity=0.254  Sum_probs=35.0

Q ss_pred             CCCccccHHHH---HHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhcCccccccc
Q 045087           41 SRDTVGLDDRM---EELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYF   95 (157)
Q Consensus        41 ~~~~vGr~~~~---~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F   95 (157)
                      -.++||.+.-+   .-|.+++..+  ...-+-+||++|+||||||+.+..  .....|
T Consensus        23 lde~vGQ~HLlg~~~~lrr~v~~~--~l~SmIl~GPPG~GKTTlA~liA~--~~~~~f   76 (436)
T COG2256          23 LDEVVGQEHLLGEGKPLRRAVEAG--HLHSMILWGPPGTGKTTLARLIAG--TTNAAF   76 (436)
T ss_pred             HHHhcChHhhhCCCchHHHHHhcC--CCceeEEECCCCCCHHHHHHHHHH--hhCCce
Confidence            35667766555   2344444444  466777899999999999999988  444444

>TIGR02237 recomb_radB DNA repair and recombination protein RadB

Probab=98.37  E-value=2.4e-06  Score=62.21  Aligned_cols=96  Identities=11%  Similarity=0.033  Sum_probs=57.1

Q ss_pred             HhcCCCCceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCCCCCHHHHHHHHHHHh----CCCCCCcc-cccc
Q 045087           58 LIEGPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPYTCYADQILDIIIKFL----MPSSRLSE-IKDK  132 (157)
Q Consensus        58 L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~l~~i~~~l----~~~~~~~~-~~~~  132 (157)
                      |..+-....++.|+|.+|+|||++|.++..  ........++|++... ++...+.+.. ...    ..+-.... ....
T Consensus         5 l~GGi~~g~i~~i~G~~GsGKT~l~~~~~~--~~~~~g~~v~yi~~e~-~~~~rl~~~~-~~~~~~~~~~i~~~~~~~~~   80 (209)
T TIGR02237         5 LGGGVERGTITQIYGPPGSGKTNICMILAV--NAARQGKKVVYIDTEG-LSPERFKQIA-EDRPERALSNFIVFEVFDFD   80 (209)
T ss_pred             hcCCCCCCeEEEEECCCCCCHHHHHHHHHH--HHHhCCCeEEEEECCC-CCHHHHHHHH-HhChHHHhcCEEEEECCCHH
Confidence            434445678999999999999999988776  3333456789999876 6666555433 221    01000000 1112


Q ss_pred             cHHHHHHHHHHHhcC-CcEEEEeeCC
Q 045087          133 NYEMKKIILHEYLMT-KRYLIVIDDV  157 (157)
Q Consensus       133 ~~~~~~~~l~~~L~~-kr~LlVlDdV  157 (157)
                      +..+.+..+.+.+.. +.-+||+|.+
T Consensus        81 ~~~~~~~~l~~~~~~~~~~lvVIDSi  106 (209)
T TIGR02237        81 EQGVAIQKTSKFIDRDSASLVVVDSF  106 (209)
T ss_pred             HHHHHHHHHHHHHhhcCccEEEEeCc
Confidence            223345555555544 4569999974

This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).

>PF13173 AAA_14: AAA domain

Probab=98.36  E-value=5.9e-07  Score=60.71  Aligned_cols=39  Identities=8%  Similarity=0.015  Sum_probs=29.0

Q ss_pred             ceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCCC
Q 045087           65 LSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPYT  106 (157)
Q Consensus        65 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~  106 (157)
                      .+++.|.|+.|+|||||++.++.+..   .....+++++...
T Consensus         2 ~~~~~l~G~R~vGKTtll~~~~~~~~---~~~~~~yi~~~~~   40 (128)
T PF13173_consen    2 RKIIILTGPRGVGKTTLLKQLAKDLL---PPENILYINFDDP   40 (128)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHhc---ccccceeeccCCH
Confidence            46899999999999999999987322   2345667766554

>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda

Probab=98.35  E-value=1.7e-06  Score=63.62  Aligned_cols=54  Identities=9%  Similarity=0.014  Sum_probs=38.5

Q ss_pred             cHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcC
Q 045087           47 LDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEP  104 (157)
Q Consensus        47 r~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~  104 (157)
                      .+..++.+.+++...  ....+.|+|.+|+|||+||+.+++  .........+++++.
T Consensus        22 ~~~~~~~l~~~~~~~--~~~~lll~G~~G~GKT~la~~~~~--~~~~~~~~~~~i~~~   75 (226)
T TIGR03420        22 NAELLAALRQLAAGK--GDRFLYLWGESGSGKSHLLQAACA--AAEERGKSAIYLPLA   75 (226)
T ss_pred             cHHHHHHHHHHHhcC--CCCeEEEECCCCCCHHHHHHHHHH--HHHhcCCcEEEEeHH
Confidence            556778888876432  356889999999999999999988  333333445566543

Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.

>TIGR01242 26Sp45 26S proteasome subunit P45 family

Probab=98.34  E-value=1.9e-06  Score=68.20  Aligned_cols=52  Identities=19%  Similarity=0.215  Sum_probs=39.6

Q ss_pred             CCccccHHHHHHHHHHHhcC-----------CCCceEEEEEeCCCCcHHHHHHHHhcCccccccc
Q 045087           42 RDTVGLDDRMEELLDLLIEG-----------PPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYF   95 (157)
Q Consensus        42 ~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F   95 (157)
                      .++.|++.++++|.+.+...           -...+-+.++|++|+|||++|+++++  .....|
T Consensus       122 ~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~--~l~~~~  184 (364)
T TIGR01242       122 EDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAH--ETNATF  184 (364)
T ss_pred             HHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHH--hCCCCE
Confidence            46789999999998877421           12245688999999999999999998  444443

Many proteins may score above the trusted cutoff because an internal

>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA

Probab=98.33  E-value=2.7e-06  Score=72.93  Aligned_cols=44  Identities=20%  Similarity=0.283  Sum_probs=37.5

Q ss_pred             CCccccHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087           42 RDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        42 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      +.++||+++++++...|....  ..-+.++|.+|+|||++|+.+.+
T Consensus       182 ~~~igr~~ei~~~~~~L~~~~--~~n~lL~G~pG~GKT~l~~~la~  225 (731)
T TIGR02639       182 DPLIGREDELERTIQVLCRRK--KNNPLLVGEPGVGKTAIAEGLAL  225 (731)
T ss_pred             CcccCcHHHHHHHHHHHhcCC--CCceEEECCCCCCHHHHHHHHHH
Confidence            579999999999998887654  23456899999999999999988

>CHL00095 clpC Clp protease ATP binding subunit

Probab=98.32  E-value=3.5e-06  Score=73.14  Aligned_cols=44  Identities=18%  Similarity=0.299  Sum_probs=37.7

Q ss_pred             CCccccHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087           42 RDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        42 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ..++||+++++++.+.|....  ..-+.++|.+|+|||++|+.++.
T Consensus       179 ~~~igr~~ei~~~~~~L~r~~--~~n~lL~G~pGvGKTal~~~la~  222 (821)
T CHL00095        179 DPVIGREKEIERVIQILGRRT--KNNPILIGEPGVGKTAIAEGLAQ  222 (821)
T ss_pred             CCCCCcHHHHHHHHHHHcccc--cCCeEEECCCCCCHHHHHHHHHH
Confidence            578999999999999997654  23456999999999999999977

>PRK03992 proteasome-activating nucleotidase; Provisional

Probab=98.30  E-value=3.8e-06  Score=67.06  Aligned_cols=46  Identities=20%  Similarity=0.222  Sum_probs=36.7

Q ss_pred             CCccccHHHHHHHHHHHhcC-----------CCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087           42 RDTVGLDDRMEELLDLLIEG-----------PPQLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        42 ~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      .++.|+++++++|.+.+...           -...+-+.++|++|+|||++|+++++
T Consensus       131 ~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~  187 (389)
T PRK03992        131 EDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAH  187 (389)
T ss_pred             HHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHH
Confidence            35779999999998876321           12345688999999999999999998

>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed

Probab=98.30  E-value=1.7e-06  Score=73.83  Aligned_cols=51  Identities=18%  Similarity=0.228  Sum_probs=38.4

Q ss_pred             CCCccccHHHHH---HHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhcCccccccc
Q 045087           41 SRDTVGLDDRME---ELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYF   95 (157)
Q Consensus        41 ~~~~vGr~~~~~---~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F   95 (157)
                      -++|+|.+..+.   .|.+.+..+  +...+.++|++|+||||||+.+++  ....+|
T Consensus        27 ldd~vGQe~ii~~~~~L~~~i~~~--~~~slLL~GPpGtGKTTLA~aIA~--~~~~~f   80 (725)
T PRK13341         27 LEEFVGQDHILGEGRLLRRAIKAD--RVGSLILYGPPGVGKTTLARIIAN--HTRAHF   80 (725)
T ss_pred             HHHhcCcHHHhhhhHHHHHHHhcC--CCceEEEECCCCCCHHHHHHHHHH--HhcCcc
Confidence            456899988774   455655544  356778999999999999999998  444444

>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport

Probab=98.30  E-value=1.1e-06  Score=58.82  Aligned_cols=20  Identities=20%  Similarity=0.217  Sum_probs=18.8

Q ss_pred             EEEEeCCCCcHHHHHHHHhc
Q 045087           68 VTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        68 i~I~G~gGiGKTtLa~~v~~   87 (157)
                      |.|+|.+|+|||++|+.+++
T Consensus         1 ill~G~~G~GKT~l~~~la~   20 (132)
T PF00004_consen    1 ILLHGPPGTGKTTLARALAQ   20 (132)
T ss_dssp             EEEESSTTSSHHHHHHHHHH
T ss_pred             CEEECcCCCCeeHHHHHHHh
Confidence            57899999999999999999

Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....

>PRK06893 DNA replication initiation factor; Validated

Probab=98.29  E-value=3.9e-06  Score=62.27  Aligned_cols=38  Identities=5%  Similarity=-0.085  Sum_probs=28.9

Q ss_pred             ceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcC
Q 045087           65 LSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEP  104 (157)
Q Consensus        65 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~  104 (157)
                      .+.+.++|.+|+|||+|++++++  +.........|++..
T Consensus        39 ~~~l~l~G~~G~GKThL~~ai~~--~~~~~~~~~~y~~~~   76 (229)
T PRK06893         39 QPFFYIWGGKSSGKSHLLKAVSN--HYLLNQRTAIYIPLS   76 (229)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHH--HHHHcCCCeEEeeHH
Confidence            45789999999999999999998  443334455677664

>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51

Probab=98.29  E-value=3.4e-06  Score=63.72  Aligned_cols=105  Identities=21%  Similarity=0.165  Sum_probs=61.4

Q ss_pred             HHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhcCcccccc----cCeeEEEEcCCCCCHHHHHHHHHHHhCCCCC-C
Q 045087           52 EELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHY----FDCHAWVQEPYTCYADQILDIIIKFLMPSSR-L  126 (157)
Q Consensus        52 ~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----F~~~~wv~~~~~~~~~~~l~~i~~~l~~~~~-~  126 (157)
                      ..|-++|..+-....+.-|+|.+|+|||.|+..++-...+...    =...+|++-...|+...+.+ |++....+.. .
T Consensus        25 ~~lD~~L~GGi~~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~~-i~~~~~~~~~~~  103 (256)
T PF08423_consen   25 KSLDELLGGGIPTGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQQ-IAERFGLDPEEI  103 (256)
T ss_dssp             HHHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHHH-HHHHTTS-HHHH
T ss_pred             HHHHHhhCCCCCCCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHHH-Hhhccccccchh
Confidence            3455555443345679999999999999999877653233222    23588999988898877654 5555432110 0


Q ss_pred             -c---ccccccHHHH---HHHHHHHhc-CCcEEEEeeCC
Q 045087          127 -S---EIKDKNYEMK---KIILHEYLM-TKRYLIVIDDV  157 (157)
Q Consensus       127 -~---~~~~~~~~~~---~~~l~~~L~-~kr~LlVlDdV  157 (157)
                       .   -....+.+++   +..+...+. ++--|||+|.+
T Consensus       104 l~~I~v~~~~~~~~l~~~L~~l~~~l~~~~ikLIVIDSI  142 (256)
T PF08423_consen  104 LDNIFVIRVFDLEELLELLEQLPKLLSESKIKLIVIDSI  142 (256)
T ss_dssp             HHTEEEEE-SSHHHHHHHHHHHHHHHHHSCEEEEEEETS
T ss_pred             hhceeeeecCCHHHHHHHHHHHHhhccccceEEEEecch
Confidence             0   0122333444   444444443 44569999975

It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....

>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein

Probab=98.28  E-value=1.4e-06  Score=65.01  Aligned_cols=35  Identities=23%  Similarity=0.382  Sum_probs=28.6

Q ss_pred             EEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEc
Q 045087           67 AVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQE  103 (157)
Q Consensus        67 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~  103 (157)
                      .++|+|.+|.|||||...++.  .....|.+..+++-
T Consensus        15 r~viIG~sGSGKT~li~~lL~--~~~~~f~~I~l~t~   49 (241)
T PF04665_consen   15 RMVIIGKSGSGKTTLIKSLLY--YLRHKFDHIFLITP   49 (241)
T ss_pred             eEEEECCCCCCHHHHHHHHHH--hhcccCCEEEEEec
Confidence            578999999999999999988  57778866666543

This is thought to be an ATPase involved in viral DNA packaging [].

>PHA02544 44 clamp loader, small subunit; Provisional

Probab=98.28  E-value=5.3e-06  Score=64.13  Aligned_cols=47  Identities=15%  Similarity=0.085  Sum_probs=39.4

Q ss_pred             CCCCccccHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087           40 KSRDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        40 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ...+++|.+...+.|..++..+. -...+.++|.+|+|||++|+.+++
T Consensus        19 ~~~~~~~~~~~~~~l~~~~~~~~-~~~~lll~G~~G~GKT~la~~l~~   65 (316)
T PHA02544         19 TIDECILPAADKETFKSIVKKGR-IPNMLLHSPSPGTGKTTVAKALCN   65 (316)
T ss_pred             cHHHhcCcHHHHHHHHHHHhcCC-CCeEEEeeCcCCCCHHHHHHHHHH
Confidence            34678999999999999987643 345777799999999999999988

>PRK07952 DNA replication protein DnaC; Validated

Probab=98.27  E-value=4.4e-05  Score=57.29  Aligned_cols=51  Identities=10%  Similarity=0.006  Sum_probs=32.2

Q ss_pred             HHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEE
Q 045087           50 RMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQ  102 (157)
Q Consensus        50 ~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~  102 (157)
                      .+..+.+...........+.++|.+|+|||+||.++++  .+...-..+++++
T Consensus        84 al~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~--~l~~~g~~v~~it  134 (244)
T PRK07952         84 ALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICN--ELLLRGKSVLIIT  134 (244)
T ss_pred             HHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHH--HHHhcCCeEEEEE
Confidence            34444444433222345788999999999999999998  4433333445553

>PRK12377 putative replication protein; Provisional

Probab=98.24  E-value=3.1e-05  Score=58.25  Aligned_cols=37  Identities=14%  Similarity=-0.050  Sum_probs=28.0

Q ss_pred             ceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEc
Q 045087           65 LSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQE  103 (157)
Q Consensus        65 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~  103 (157)
                      ...+.++|.+|+|||+||.++.+  .+......++++++
T Consensus       101 ~~~l~l~G~~GtGKThLa~AIa~--~l~~~g~~v~~i~~  137 (248)
T PRK12377        101 CTNFVFSGKPGTGKNHLAAAIGN--RLLAKGRSVIVVTV  137 (248)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHH--HHHHcCCCeEEEEH
Confidence            45789999999999999999999  44444444566554

>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]

Probab=98.23  E-value=3.4e-06  Score=66.19  Aligned_cols=90  Identities=18%  Similarity=0.224  Sum_probs=51.4

Q ss_pred             CccccHHHHHH---HHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCCCCCHHHHHHHHHHH
Q 045087           43 DTVGLDDRMEE---LLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPYTCYADQILDIIIKF  119 (157)
Q Consensus        43 ~~vGr~~~~~~---l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~l~~i~~~  119 (157)
                      +.||.+.-+.+   |.+++..+  ..+-+.+||++|+||||||+.+....+-..    ..||.++..-.-.+=+++|+++
T Consensus       139 dyvGQ~hlv~q~gllrs~ieq~--~ipSmIlWGppG~GKTtlArlia~tsk~~S----yrfvelSAt~a~t~dvR~ife~  212 (554)
T KOG2028|consen  139 DYVGQSHLVGQDGLLRSLIEQN--RIPSMILWGPPGTGKTTLARLIASTSKKHS----YRFVELSATNAKTNDVRDIFEQ  212 (554)
T ss_pred             HhcchhhhcCcchHHHHHHHcC--CCCceEEecCCCCchHHHHHHHHhhcCCCc----eEEEEEeccccchHHHHHHHHH
Confidence            45555544322   33333333  477788999999999999999988433222    3456655443333333444433


Q ss_pred             hCCCCCCcccccccHHHHHHHHHHHhcCCcEEEEeeCC
Q 045087          120 LMPSSRLSEIKDKNYEMKKIILHEYLMTKRYLIVIDDV  157 (157)
Q Consensus       120 l~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdV  157 (157)
                      ....                   ..|.++|.+|.+|+|
T Consensus       213 aq~~-------------------~~l~krkTilFiDEi  231 (554)
T KOG2028|consen  213 AQNE-------------------KSLTKRKTILFIDEI  231 (554)
T ss_pred             HHHH-------------------HhhhcceeEEEeHHh
Confidence            2221                   124566777777764

>PLN03025 replication factor C subunit; Provisional

Probab=98.23  E-value=8e-06  Score=63.49  Aligned_cols=45  Identities=20%  Similarity=0.230  Sum_probs=37.5

Q ss_pred             CCCccccHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087           41 SRDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        41 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      -.+++|.++.++.|..++..+.  .+.+.++|++|+||||+|..+++
T Consensus        12 l~~~~g~~~~~~~L~~~~~~~~--~~~lll~Gp~G~GKTtla~~la~   56 (319)
T PLN03025         12 LDDIVGNEDAVSRLQVIARDGN--MPNLILSGPPGTGKTTSILALAH   56 (319)
T ss_pred             HHHhcCcHHHHHHHHHHHhcCC--CceEEEECCCCCCHHHHHHHHHH
Confidence            4578999999999988876543  45678999999999999999987

>cd01394 radB RadB

Probab=98.23  E-value=1.2e-05  Score=58.90  Aligned_cols=100  Identities=15%  Similarity=0.064  Sum_probs=56.4

Q ss_pred             HHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCCCCCHHHHHHHHHHH----hCCCCCCc
Q 045087           52 EELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPYTCYADQILDIIIKF----LMPSSRLS  127 (157)
Q Consensus        52 ~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~l~~i~~~----l~~~~~~~  127 (157)
                      ..|-.+|..+-....++.|+|.+|+||||+|.+++.  .....-..++|++....+.  +-+.+++..    +...-.. 
T Consensus         6 ~~LD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~~a~--~~~~~g~~v~yi~~e~~~~--~~~~~~~~~~~~~~~~~~~~-   80 (218)
T cd01394           6 KGLDELLGGGVERGTVTQVYGPPGTGKTNIAIQLAV--ETAGQGKKVAYIDTEGLSS--ERFRQIAGDRPERAASSIIV-   80 (218)
T ss_pred             hHHHHHhcCCccCCeEEEEECCCCCCHHHHHHHHHH--HHHhcCCeEEEEECCCCCH--HHHHHHHhHChHhhhcCEEE-
Confidence            445555544445678999999999999999988876  3333334567887655543  333333322    1111000 


Q ss_pred             ccccccHH---HHHHHHHHHhcCCcEEEEeeCC
Q 045087          128 EIKDKNYE---MKKIILHEYLMTKRYLIVIDDV  157 (157)
Q Consensus       128 ~~~~~~~~---~~~~~l~~~L~~kr~LlVlDdV  157 (157)
                       ....+..   ..+..+...+..+.-++|+|.+
T Consensus        81 -~~~~~~~~~~~~~~~~~~~~~~~~~lvvIDsi  112 (218)
T cd01394          81 -FEPMDFNEQGRAIQETETFADEKVDLVVVDSA  112 (218)
T ss_pred             -EeCCCHHHHHHHHHHHHHHHhcCCcEEEEech
Confidence             1112222   2334455555555678999964

The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.

>PRK08116 hypothetical protein; Validated

Probab=98.21  E-value=1.7e-05  Score=60.25  Aligned_cols=35  Identities=20%  Similarity=0.079  Sum_probs=26.4

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEE
Q 045087           66 SAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQ  102 (157)
Q Consensus        66 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~  102 (157)
                      ..+.++|.+|+|||.||.++++  .+.......++++
T Consensus       115 ~gl~l~G~~GtGKThLa~aia~--~l~~~~~~v~~~~  149 (268)
T PRK08116        115 VGLLLWGSVGTGKTYLAACIAN--ELIEKGVPVIFVN  149 (268)
T ss_pred             ceEEEECCCCCCHHHHHHHHHH--HHHHcCCeEEEEE
Confidence            3588999999999999999999  4443333455555

>TIGR03689 pup_AAA proteasome ATPase

Probab=98.21  E-value=6.2e-06  Score=67.74  Aligned_cols=48  Identities=25%  Similarity=0.249  Sum_probs=37.6

Q ss_pred             CCCccccHHHHHHHHHHHhc-----------CCCCceEEEEEeCCCCcHHHHHHHHhcC
Q 045087           41 SRDTVGLDDRMEELLDLLIE-----------GPPQLSAVTILDSIGLDKTAFAAEAYSS   88 (157)
Q Consensus        41 ~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vi~I~G~gGiGKTtLa~~v~~~   88 (157)
                      ..++.|.+..+++|.+.+..           +-...+-+.++|++|+|||++|+++++.
T Consensus       181 ~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~e  239 (512)
T TIGR03689       181 YADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANS  239 (512)
T ss_pred             HHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHh
Confidence            35688899999999887642           1123456889999999999999999993

In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.

>PRK10865 protein disaggregation chaperone; Provisional

Probab=98.20  E-value=6.3e-06  Score=71.80  Aligned_cols=44  Identities=16%  Similarity=0.283  Sum_probs=37.7

Q ss_pred             CCccccHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087           42 RDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        42 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ..++||+.++++++..|....  ..-+.++|.+|+|||++|+.+..
T Consensus       178 ~~vigr~~ei~~~i~iL~r~~--~~n~lL~G~pGvGKT~l~~~la~  221 (857)
T PRK10865        178 DPVIGRDEEIRRTIQVLQRRT--KNNPVLIGEPGVGKTAIVEGLAQ  221 (857)
T ss_pred             CcCCCCHHHHHHHHHHHhcCC--cCceEEECCCCCCHHHHHHHHHH
Confidence            579999999999999887754  33456899999999999999987

>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family

Probab=98.19  E-value=6.3e-06  Score=71.69  Aligned_cols=45  Identities=20%  Similarity=0.330  Sum_probs=38.0

Q ss_pred             CCCccccHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087           41 SRDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        41 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      -..++||+.++.++...|....  ..-+.++|.+|+||||+|+.+..
T Consensus       186 ld~~iGr~~ei~~~i~~l~r~~--~~n~lLvG~pGvGKTal~~~La~  230 (852)
T TIGR03345       186 IDPVLGRDDEIRQMIDILLRRR--QNNPILTGEAGVGKTAVVEGLAL  230 (852)
T ss_pred             CCcccCCHHHHHHHHHHHhcCC--cCceeEECCCCCCHHHHHHHHHH
Confidence            3678999999999999887754  23456999999999999999987

Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.

>TIGR02012 tigrfam_recA protein RecA

Probab=98.17  E-value=9e-06  Score=63.19  Aligned_cols=99  Identities=18%  Similarity=0.046  Sum_probs=60.9

Q ss_pred             HHHHHHHh-cCCCCceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCCCCCHHHHHHHHHHHhCCCCC-Cccc
Q 045087           52 EELLDLLI-EGPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPYTCYADQILDIIIKFLMPSSR-LSEI  129 (157)
Q Consensus        52 ~~l~~~L~-~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~l~~i~~~l~~~~~-~~~~  129 (157)
                      ..|-.+|- .+-+..+++.|+|.+|+||||||.++..  .....-..++|+.....++..     .+.+++.+.. .--.
T Consensus        41 ~~LD~~Lg~GGlp~G~iteI~G~~GsGKTtLaL~~~~--~~~~~g~~v~yId~E~~~~~~-----~a~~lGvd~~~l~v~  113 (321)
T TIGR02012        41 LSLDLALGVGGLPRGRIIEIYGPESSGKTTLALHAIA--EAQKAGGTAAFIDAEHALDPV-----YARKLGVDIDNLLVS  113 (321)
T ss_pred             HHHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHH--HHHHcCCcEEEEcccchhHHH-----HHHHcCCCHHHeEEe
Confidence            44445554 4446678999999999999999988766  333334567788877665543     2344433211 0001


Q ss_pred             ccccHHHHHHHHHHHhc-CCcEEEEeeCC
Q 045087          130 KDKNYEMKKIILHEYLM-TKRYLIVIDDV  157 (157)
Q Consensus       130 ~~~~~~~~~~~l~~~L~-~kr~LlVlDdV  157 (157)
                      ...+.++.+..+...++ +..-++|+|.|
T Consensus       114 ~p~~~eq~l~~~~~li~~~~~~lIVIDSv  142 (321)
T TIGR02012       114 QPDTGEQALEIAETLVRSGAVDIIVVDSV  142 (321)
T ss_pred             cCCCHHHHHHHHHHHhhccCCcEEEEcch
Confidence            22345666666666554 45679999975

This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.

>PRK14963 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.17  E-value=1.4e-06  Score=71.59  Aligned_cols=47  Identities=26%  Similarity=0.172  Sum_probs=38.9

Q ss_pred             CCCccccHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhcC
Q 045087           41 SRDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSS   88 (157)
Q Consensus        41 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~   88 (157)
                      ..+++|.+.-++.|.+++..+. -...+.++|++|+||||+|+.+++.
T Consensus        13 ~~dvvGq~~v~~~L~~~i~~~~-l~ha~Lf~GppGtGKTTlA~~lA~~   59 (504)
T PRK14963         13 FDEVVGQEHVKEVLLAALRQGR-LGHAYLFSGPRGVGKTTTARLIAMA   59 (504)
T ss_pred             HHHhcChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            4578999999999999887753 2345689999999999999999874

>PRK00440 rfc replication factor C small subunit; Reviewed

Probab=98.16  E-value=2.1e-05  Score=60.65  Aligned_cols=45  Identities=20%  Similarity=0.209  Sum_probs=38.4

Q ss_pred             CCCccccHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087           41 SRDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        41 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      -.+++|++..++.|..++..+.  .+.+.++|.+|+||||+|+.+++
T Consensus        16 ~~~~~g~~~~~~~l~~~i~~~~--~~~~ll~G~~G~GKt~~~~~l~~   60 (319)
T PRK00440         16 LDEIVGQEEIVERLKSYVKEKN--MPHLLFAGPPGTGKTTAALALAR   60 (319)
T ss_pred             HHHhcCcHHHHHHHHHHHhCCC--CCeEEEECCCCCCHHHHHHHHHH
Confidence            3568999999999999987643  44679999999999999999987

>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response

Probab=98.16  E-value=1.1e-05  Score=62.85  Aligned_cols=99  Identities=20%  Similarity=0.051  Sum_probs=61.0

Q ss_pred             HHHHHHHh-cCCCCceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCCCCCHHHHHHHHHHHhCCCCC-Cccc
Q 045087           52 EELLDLLI-EGPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPYTCYADQILDIIIKFLMPSSR-LSEI  129 (157)
Q Consensus        52 ~~l~~~L~-~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~l~~i~~~l~~~~~-~~~~  129 (157)
                      ..|-.+|- .+-+..+++-|+|++|+||||||.+++.  .....-..++|++....+++.     .+..++.+.+ .--.
T Consensus        41 ~~LD~~Lg~GGlp~G~iteI~Gp~GsGKTtLal~~~~--~~~~~g~~~vyId~E~~~~~~-----~a~~lGvd~~~l~v~  113 (325)
T cd00983          41 LSLDIALGIGGYPKGRIIEIYGPESSGKTTLALHAIA--EAQKLGGTVAFIDAEHALDPV-----YAKKLGVDLDNLLIS  113 (325)
T ss_pred             HHHHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHH--HHHHcCCCEEEECccccHHHH-----HHHHcCCCHHHheec
Confidence            44445554 3445678999999999999999988766  333344567888877766653     2333332110 0001


Q ss_pred             ccccHHHHHHHHHHHhc-CCcEEEEeeCC
Q 045087          130 KDKNYEMKKIILHEYLM-TKRYLIVIDDV  157 (157)
Q Consensus       130 ~~~~~~~~~~~l~~~L~-~kr~LlVlDdV  157 (157)
                      ...+.++....+...++ +.--|+|+|.|
T Consensus       114 ~p~~~eq~l~i~~~li~s~~~~lIVIDSv  142 (325)
T cd00983         114 QPDTGEQALEIADSLVRSGAVDLIVVDSV  142 (325)
T ss_pred             CCCCHHHHHHHHHHHHhccCCCEEEEcch
Confidence            22345666776666654 44579999975

RecA couples ATP hydrolysis to DNA strand exchange.

>PRK14956 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.15  E-value=7.8e-06  Score=66.53  Aligned_cols=47  Identities=23%  Similarity=0.169  Sum_probs=39.4

Q ss_pred             CCCCccccHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087           40 KSRDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        40 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      .-.+++|.+..+..|.+++..+. -...+.++|++|+||||+|+.++.
T Consensus        16 ~f~dvVGQe~iv~~L~~~i~~~r-i~ha~Lf~GP~GtGKTTlAriLAk   62 (484)
T PRK14956         16 FFRDVIHQDLAIGALQNALKSGK-IGHAYIFFGPRGVGKTTIARILAK   62 (484)
T ss_pred             CHHHHhChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHH
Confidence            34678999999999999988764 234578999999999999999987

>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1

Probab=98.14  E-value=1.9e-05  Score=61.28  Aligned_cols=105  Identities=14%  Similarity=0.118  Sum_probs=63.3

Q ss_pred             HHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhcCccccc----ccCeeEEEEcCCCCCHHHHHHHHHHHhCCCCCC-
Q 045087           52 EELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKH----YFDCHAWVQEPYTCYADQILDIIIKFLMPSSRL-  126 (157)
Q Consensus        52 ~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~~~~~~~~~~~l~~i~~~l~~~~~~-  126 (157)
                      ..|-++|..+-....++-|+|.+|+|||+|+..++-......    .=...+|++...+|+++++.+ ++..++.+... 
T Consensus        83 ~~LD~lLgGGi~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~-~a~~~g~d~~~~  161 (313)
T TIGR02238        83 QALDGILGGGIESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRA-IAERFGVDPDAV  161 (313)
T ss_pred             HHHHHHhCCCCcCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHH-HHHHcCCChHHh
Confidence            455555555445678999999999999999977653212211    124678999999898888754 45555442110 


Q ss_pred             -cc---cccccHHHHH---HHHHHHhc-CCcEEEEeeCC
Q 045087          127 -SE---IKDKNYEMKK---IILHEYLM-TKRYLIVIDDV  157 (157)
Q Consensus       127 -~~---~~~~~~~~~~---~~l~~~L~-~kr~LlVlDdV  157 (157)
                       ..   ....+.++..   ..+...+. ++--|||+|.+
T Consensus       162 l~~i~~~~~~~~e~~~~~l~~l~~~i~~~~~~LvVIDSi  200 (313)
T TIGR02238       162 LDNILYARAYTSEHQMELLDYLAAKFSEEPFRLLIVDSI  200 (313)
T ss_pred             cCcEEEecCCCHHHHHHHHHHHHHHhhccCCCEEEEEcc
Confidence             00   1122333333   44444443 34568999975

This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.

>PRK08084 DNA replication initiation factor; Provisional

Probab=98.14  E-value=1.1e-05  Score=60.13  Aligned_cols=59  Identities=12%  Similarity=0.070  Sum_probs=37.3

Q ss_pred             Cccc-cHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCC
Q 045087           43 DTVG-LDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPY  105 (157)
Q Consensus        43 ~~vG-r~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~  105 (157)
                      .++| ....+..+.++....  ....+.|+|++|+|||+|++.+++  .....-....|+++..
T Consensus        24 f~~~~n~~a~~~l~~~~~~~--~~~~l~l~Gp~G~GKThLl~a~~~--~~~~~~~~v~y~~~~~   83 (235)
T PRK08084         24 FYPGDNDSLLAALQNALRQE--HSGYIYLWSREGAGRSHLLHAACA--ELSQRGRAVGYVPLDK   83 (235)
T ss_pred             cccCccHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHH--HHHhCCCeEEEEEHHH
Confidence            3446 344555555555433  245789999999999999999988  3333323345666543

>PRK14957 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.14  E-value=1.8e-05  Score=65.59  Aligned_cols=46  Identities=15%  Similarity=0.143  Sum_probs=38.3

Q ss_pred             CCCccccHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087           41 SRDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        41 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ..+++|.+..++.|.+.+..+. -...+.++|+.|+||||+|+.++.
T Consensus        15 f~diiGq~~~v~~L~~~i~~~r-l~ha~Lf~Gp~GvGKTTlAr~lAk   60 (546)
T PRK14957         15 FAEVAGQQHALNSLVHALETQK-VHHAYLFTGTRGVGKTTLGRLLAK   60 (546)
T ss_pred             HHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHH
Confidence            4678999999999999887653 234577899999999999999876

>PRK08118 topology modulation protein; Reviewed

Probab=98.14  E-value=9.4e-06  Score=57.43  Aligned_cols=35  Identities=20%  Similarity=0.314  Sum_probs=27.2

Q ss_pred             EEEEEeCCCCcHHHHHHHHhcCcccc-cccCeeEEE
Q 045087           67 AVTILDSIGLDKTAFAAEAYSSNYMK-HYFDCHAWV  101 (157)
Q Consensus        67 vi~I~G~gGiGKTtLa~~v~~~~~~~-~~F~~~~wv  101 (157)
                      .|.|+|++|+||||||+.+++...+. -+|+..+|-
T Consensus         3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~~   38 (167)
T PRK08118          3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFWK   38 (167)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCCceecchhhcc
Confidence            58899999999999999999854443 346766653

>PRK12608 transcription termination factor Rho; Provisional

Probab=98.13  E-value=1.8e-05  Score=62.61  Aligned_cols=103  Identities=10%  Similarity=-0.045  Sum_probs=62.4

Q ss_pred             HHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhcCcccccc-cCe-eEEEEcCCC-CCHHHHHHHHHHHhCCCCC-Cc
Q 045087           52 EELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHY-FDC-HAWVQEPYT-CYADQILDIIIKFLMPSSR-LS  127 (157)
Q Consensus        52 ~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-F~~-~~wv~~~~~-~~~~~~l~~i~~~l~~~~~-~~  127 (157)
                      .++++++..-. +...+.|+|.+|+|||||++.+++  .+... -+. ++|+.++.. .+..+++..++..+..+.. .+
T Consensus       121 ~RvID~l~PiG-kGQR~LIvG~pGtGKTTLl~~la~--~i~~~~~dv~~vv~lIgER~~EV~df~~~i~~~Vvast~de~  197 (380)
T PRK12608        121 MRVVDLVAPIG-KGQRGLIVAPPRAGKTVLLQQIAA--AVAANHPEVHLMVLLIDERPEEVTDMRRSVKGEVYASTFDRP  197 (380)
T ss_pred             HhhhhheeecC-CCceEEEECCCCCCHHHHHHHHHH--HHHhcCCCceEEEEEecCCCCCHHHHHHHHhhhEEeecCCCC
Confidence            34666665432 335679999999999999999888  44332 233 366666654 5688999999887665331 00


Q ss_pred             ccccccHHHHHHHHHHHh--cCCcEEEEeeCC
Q 045087          128 EIKDKNYEMKKIILHEYL--MTKRYLIVIDDV  157 (157)
Q Consensus       128 ~~~~~~~~~~~~~l~~~L--~~kr~LlVlDdV  157 (157)
                      ...-.........+.+++  .+++++||+|++
T Consensus       198 ~~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDsl  229 (380)
T PRK12608        198 PDEHIRVAELVLERAKRLVEQGKDVVILLDSL  229 (380)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCc
Confidence            001011111222233333  588999999985

>PRK14962 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.11  E-value=2.9e-05  Score=63.51  Aligned_cols=46  Identities=20%  Similarity=0.152  Sum_probs=37.6

Q ss_pred             CCCccccHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087           41 SRDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        41 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      -++++|.+..++.|.+.+..+. -...+.++|++|+||||+|+.+.+
T Consensus        13 ~~divGq~~i~~~L~~~i~~~~-l~~~~Lf~GPpGtGKTTlA~~lA~   58 (472)
T PRK14962         13 FSEVVGQDHVKKLIINALKKNS-ISHAYIFAGPRGTGKTTVARILAK   58 (472)
T ss_pred             HHHccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHH
Confidence            4679999988888888776653 234578999999999999999977

>PLN03187 meiotic recombination protein DMC1 homolog; Provisional

Probab=98.11  E-value=1.3e-05  Score=62.87  Aligned_cols=105  Identities=17%  Similarity=0.145  Sum_probs=62.9

Q ss_pred             HHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhcCccccc----ccCeeEEEEcCCCCCHHHHHHHHHHHhCCCCC--
Q 045087           52 EELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKH----YFDCHAWVQEPYTCYADQILDIIIKFLMPSSR--  125 (157)
Q Consensus        52 ~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~~~~~~~~~~~l~~i~~~l~~~~~--  125 (157)
                      ..|-++|..+-....+.-|+|.+|+|||+|+..++-......    .-...+|++...+|+++++.+ ++..++.+..  
T Consensus       113 ~~LD~lLgGGi~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~-ia~~~g~d~~~~  191 (344)
T PLN03187        113 QALDELLGGGIETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVP-IAERFGMDADAV  191 (344)
T ss_pred             HhHHhhcCCCCCCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHH-HHHHcCCChhhh
Confidence            344455544445667888999999999999987753222211    124678999999999888765 4555544211  


Q ss_pred             ---CcccccccHHHHH---HHHHHHhc-CCcEEEEeeCC
Q 045087          126 ---LSEIKDKNYEMKK---IILHEYLM-TKRYLIVIDDV  157 (157)
Q Consensus       126 ---~~~~~~~~~~~~~---~~l~~~L~-~kr~LlVlDdV  157 (157)
                         ..-....+.+++.   ..+...+. ++--|||+|.+
T Consensus       192 l~~I~~~~~~~~e~~~~~l~~l~~~i~~~~~~LvVIDSi  230 (344)
T PLN03187        192 LDNIIYARAYTYEHQYNLLLGLAAKMAEEPFRLLIVDSV  230 (344)
T ss_pred             cCeEEEecCCCHHHHHHHHHHHHHHHHhcCCCEEEEeCc
Confidence               0001223444433   33333443 34568999975

>PRK08727 hypothetical protein; Validated

Probab=98.10  E-value=2.3e-05  Score=58.31  Aligned_cols=60  Identities=13%  Similarity=0.074  Sum_probs=37.3

Q ss_pred             CCcccc-HHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCC
Q 045087           42 RDTVGL-DDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPY  105 (157)
Q Consensus        42 ~~~vGr-~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~  105 (157)
                      ++|++. ...+..+..+....  ....+.|+|.+|+|||+|++++++  ...+......|++..+
T Consensus        19 ~~f~~~~~n~~~~~~~~~~~~--~~~~l~l~G~~G~GKThL~~a~~~--~~~~~~~~~~y~~~~~   79 (233)
T PRK08727         19 DSYIAAPDGLLAQLQALAAGQ--SSDWLYLSGPAGTGKTHLALALCA--AAEQAGRSSAYLPLQA   79 (233)
T ss_pred             hhccCCcHHHHHHHHHHHhcc--CCCeEEEECCCCCCHHHHHHHHHH--HHHHcCCcEEEEeHHH
Confidence            445444 34444444333222  234699999999999999999988  4444444556776543

>PRK09354 recA recombinase A; Provisional

Probab=98.10  E-value=9.3e-06  Score=63.69  Aligned_cols=99  Identities=21%  Similarity=0.053  Sum_probs=62.6

Q ss_pred             HHHHHHHh-cCCCCceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCCCCCHHHHHHHHHHHhCCCCC-Cccc
Q 045087           52 EELLDLLI-EGPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPYTCYADQILDIIIKFLMPSSR-LSEI  129 (157)
Q Consensus        52 ~~l~~~L~-~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~l~~i~~~l~~~~~-~~~~  129 (157)
                      ..|-.+|- .+-+..+++-|+|.+|+||||||.+++.  .....-..++|+.....++..     .+.+++.+.. .--.
T Consensus        46 ~~LD~~LG~GGip~G~IteI~G~~GsGKTtLal~~~~--~~~~~G~~~~yId~E~s~~~~-----~a~~lGvdld~lli~  118 (349)
T PRK09354         46 LALDIALGIGGLPRGRIVEIYGPESSGKTTLALHAIA--EAQKAGGTAAFIDAEHALDPV-----YAKKLGVDIDNLLVS  118 (349)
T ss_pred             HHHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHH--HHHHcCCcEEEECCccchHHH-----HHHHcCCCHHHeEEe
Confidence            44555565 4446678999999999999999988776  333444677899887776653     2344433210 0001


Q ss_pred             ccccHHHHHHHHHHHhc-CCcEEEEeeCC
Q 045087          130 KDKNYEMKKIILHEYLM-TKRYLIVIDDV  157 (157)
Q Consensus       130 ~~~~~~~~~~~l~~~L~-~kr~LlVlDdV  157 (157)
                      ...+.++.+..+...++ +..-|||+|.|
T Consensus       119 qp~~~Eq~l~i~~~li~s~~~~lIVIDSv  147 (349)
T PRK09354        119 QPDTGEQALEIADTLVRSGAVDLIVVDSV  147 (349)
T ss_pred             cCCCHHHHHHHHHHHhhcCCCCEEEEeCh
Confidence            22345666666666654 45579999975

>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB

Probab=98.10  E-value=1.7e-05  Score=69.24  Aligned_cols=44  Identities=16%  Similarity=0.283  Sum_probs=37.3

Q ss_pred             CCccccHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087           42 RDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        42 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ..++||+.++.++...|....  ..-+.++|.+|+|||++|+.+..
T Consensus       173 ~~~igr~~ei~~~~~~l~r~~--~~n~lL~G~pGvGKT~l~~~la~  216 (852)
T TIGR03346       173 DPVIGRDEEIRRTIQVLSRRT--KNNPVLIGEPGVGKTAIVEGLAQ  216 (852)
T ss_pred             CcCCCcHHHHHHHHHHHhcCC--CCceEEEcCCCCCHHHHHHHHHH
Confidence            569999999999999987754  23455899999999999999887

Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.

>PRK14088 dnaA chromosomal replication initiation protein; Provisional

Probab=98.10  E-value=2.8e-05  Score=63.07  Aligned_cols=36  Identities=19%  Similarity=0.293  Sum_probs=26.7

Q ss_pred             ceEEEEEeCCCCcHHHHHHHHhcCccccccc-C-eeEEEE
Q 045087           65 LSAVTILDSIGLDKTAFAAEAYSSNYMKHYF-D-CHAWVQ  102 (157)
Q Consensus        65 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F-~-~~~wv~  102 (157)
                      ...+.|+|.+|+|||+|++++++  .+...+ . ..+|++
T Consensus       130 ~n~l~lyG~~G~GKTHLl~ai~~--~l~~~~~~~~v~yi~  167 (440)
T PRK14088        130 YNPLFIYGGVGLGKTHLLQSIGN--YVVQNEPDLRVMYIT  167 (440)
T ss_pred             CCeEEEEcCCCCcHHHHHHHHHH--HHHHhCCCCeEEEEE
Confidence            45699999999999999999998  544432 2 344554

>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional

Probab=98.09  E-value=2.9e-05  Score=62.20  Aligned_cols=46  Identities=24%  Similarity=0.233  Sum_probs=36.5

Q ss_pred             CCccccHHHHHHHHHHHhc-----------CCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087           42 RDTVGLDDRMEELLDLLIE-----------GPPQLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        42 ~~~vGr~~~~~~l~~~L~~-----------~~~~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      .++.|.+...++|.+.+..           +-...+-+.++|++|+|||+||+++++
T Consensus       145 ~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~  201 (398)
T PTZ00454        145 SDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAH  201 (398)
T ss_pred             HHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHH
Confidence            4678999999988877631           112356788999999999999999998

>PRK14961 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.09  E-value=4.4e-05  Score=60.43  Aligned_cols=46  Identities=22%  Similarity=0.173  Sum_probs=38.8

Q ss_pred             CCCccccHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087           41 SRDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        41 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      -++++|.+.-++.|.+.+..+. -...+.++|++|+||||+|+.+.+
T Consensus        15 ~~~iiGq~~~~~~l~~~~~~~~-~~h~~L~~Gp~G~GKTtla~~la~   60 (363)
T PRK14961         15 FRDIIGQKHIVTAISNGLSLGR-IHHAWLLSGTRGVGKTTIARLLAK   60 (363)
T ss_pred             hhhccChHHHHHHHHHHHHcCC-CCeEEEEecCCCCCHHHHHHHHHH
Confidence            4678999999999999887653 234678999999999999999987

>TIGR00362 DnaA chromosomal replication initiator protein DnaA

Probab=98.08  E-value=3e-05  Score=62.17  Aligned_cols=49  Identities=18%  Similarity=0.193  Sum_probs=31.2

Q ss_pred             ccccHHH--HHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhcCcccccc
Q 045087           44 TVGLDDR--MEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHY   94 (157)
Q Consensus        44 ~vGr~~~--~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~   94 (157)
                      ++|....  ...+.++..........+.|+|.+|+|||+|++++++  .+.+.
T Consensus       113 i~g~~n~~a~~~~~~~~~~~~~~~n~l~l~G~~G~GKThL~~ai~~--~l~~~  163 (405)
T TIGR00362       113 VVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGN--EILEN  163 (405)
T ss_pred             ccCCcHHHHHHHHHHHHhCcCccCCeEEEECCCCCcHHHHHHHHHH--HHHHh
Confidence            5565443  2233333333222345788999999999999999998  44443

DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).

>PRK14949 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.08  E-value=2.6e-05  Score=67.59  Aligned_cols=47  Identities=19%  Similarity=0.164  Sum_probs=38.8

Q ss_pred             CCCccccHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhcC
Q 045087           41 SRDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSS   88 (157)
Q Consensus        41 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~   88 (157)
                      ..+++|.+.-++.|.+++..+. -...+.++|.+|+||||+|+.+++.
T Consensus        15 FddIIGQe~Iv~~LknaI~~~r-l~HAyLFtGPpGtGKTTLARiLAk~   61 (944)
T PRK14949         15 FEQMVGQSHVLHALTNALTQQR-LHHAYLFTGTRGVGKTSLARLFAKG   61 (944)
T ss_pred             HHHhcCcHHHHHHHHHHHHhCC-CCeEEEEECCCCCCHHHHHHHHHHh
Confidence            4679999999999999987653 2334578999999999999999873

>PRK07003 DNA polymerase III subunits gamma and tau; Validated

Probab=98.07  E-value=3.3e-05  Score=65.88  Aligned_cols=46  Identities=20%  Similarity=0.145  Sum_probs=38.2

Q ss_pred             CCCccccHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087           41 SRDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        41 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      .++++|.+..++.|.+++..+. -...+.++|..|+||||+|+.+.+
T Consensus        15 FdEVIGQe~Vv~~L~~aL~~gR-L~HAyLFtGPpGvGKTTlAriLAK   60 (830)
T PRK07003         15 FASLVGQEHVVRALTHALDGGR-LHHAYLFTGTRGVGKTTLSRIFAK   60 (830)
T ss_pred             HHHHcCcHHHHHHHHHHHhcCC-CCeEEEEECCCCCCHHHHHHHHHH
Confidence            4678999999999999987653 234557999999999999998876

>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain

Probab=98.07  E-value=2.2e-05  Score=59.65  Aligned_cols=92  Identities=11%  Similarity=0.182  Sum_probs=56.0

Q ss_pred             CceEEEEEeCCCCcHHHHHHHHhcCcccccccCe-eEEEEcCCCC-CHHHHHHHHHHHhCCCCCC---cccccccHH---
Q 045087           64 QLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDC-HAWVQEPYTC-YADQILDIIIKFLMPSSRL---SEIKDKNYE---  135 (157)
Q Consensus        64 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~-~~wv~~~~~~-~~~~~l~~i~~~l~~~~~~---~~~~~~~~~---  135 (157)
                      +...++|.|.+|+|||||+..+++  .++.+|.. ++++.++... ...+++..+...-......   ...+.....   
T Consensus        68 ~GQr~~If~~~G~GKTtLa~~i~~--~i~~~~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~  145 (274)
T cd01133          68 KGGKIGLFGGAGVGKTVLIMELIN--NIAKAHGGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARAR  145 (274)
T ss_pred             cCCEEEEecCCCCChhHHHHHHHH--HHHhcCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHH
Confidence            456789999999999999999999  66656644 4455666654 3566666665431111000   001111222   


Q ss_pred             --HHHHHHHHHh--c-CCcEEEEeeCC
Q 045087          136 --MKKIILHEYL--M-TKRYLIVIDDV  157 (157)
Q Consensus       136 --~~~~~l~~~L--~-~kr~LlVlDdV  157 (157)
                        ...-.+.+++  + ++.+||++||+
T Consensus       146 ~~~~a~~~AEyfr~~~g~~Vl~~~Dsl  172 (274)
T cd01133         146 VALTGLTMAEYFRDEEGQDVLLFIDNI  172 (274)
T ss_pred             HHHHHHHHHHHHHHhcCCeEEEEEeCh
Confidence              2233455565  3 88999999985

The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.

>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication

Probab=98.06  E-value=4.9e-05  Score=56.10  Aligned_cols=41  Identities=10%  Similarity=0.075  Sum_probs=28.7

Q ss_pred             HHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhcCccccc
Q 045087           51 MEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKH   93 (157)
Q Consensus        51 ~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~   93 (157)
                      .....+...........+.|+|..|+|||.|.+++++  ++.+
T Consensus        20 ~~~~~~ia~~~~~~~~~l~l~G~~G~GKTHLL~Ai~~--~~~~   60 (219)
T PF00308_consen   20 YAAAKAIAENPGERYNPLFLYGPSGLGKTHLLQAIAN--EAQK   60 (219)
T ss_dssp             HHHHHHHHHSTTTSSSEEEEEESTTSSHHHHHHHHHH--HHHH
T ss_pred             HHHHHHHHhcCCCCCCceEEECCCCCCHHHHHHHHHH--HHHh
Confidence            3333433333333456789999999999999999998  5544

DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.

>PRK07261 topology modulation protein; Provisional

Probab=98.06  E-value=2.5e-05  Score=55.49  Aligned_cols=55  Identities=16%  Similarity=0.170  Sum_probs=32.8

Q ss_pred             EEEEEeCCCCcHHHHHHHHhcCcccc-cccCeeEEEEcCCCCCHHHHHHHHHHHhC
Q 045087           67 AVTILDSIGLDKTAFAAEAYSSNYMK-HYFDCHAWVQEPYTCYADQILDIIIKFLM  121 (157)
Q Consensus        67 vi~I~G~gGiGKTtLa~~v~~~~~~~-~~F~~~~wv~~~~~~~~~~~l~~i~~~l~  121 (157)
                      .|.|+|++|+||||||+.+.....+. -+.+...|-......+..++...+...+.
T Consensus         2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~   57 (171)
T PRK07261          2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQPNWQERDDDDMIADISNFLL   57 (171)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEeccccccCCHHHHHHHHHHHHh
Confidence            47899999999999999987632221 12344445332233344455555544443

>TIGR02236 recomb_radA DNA repair and recombination protein RadA

Probab=98.05  E-value=4.1e-05  Score=59.23  Aligned_cols=105  Identities=11%  Similarity=0.129  Sum_probs=60.8

Q ss_pred             HHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhcCcccccc----cCeeEEEEcCCCCCHHHHHHHHHHHhCCCCC--
Q 045087           52 EELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHY----FDCHAWVQEPYTCYADQILDIIIKFLMPSSR--  125 (157)
Q Consensus        52 ~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----F~~~~wv~~~~~~~~~~~l~~i~~~l~~~~~--  125 (157)
                      ..+..+|..+-....++-|+|.+|+|||+++.+++........    -...+|++....|+.+.+.+. +..++.+..  
T Consensus        82 ~~lD~~l~GGi~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~~~-~~~~gl~~~~~  160 (310)
T TIGR02236        82 KELDELLGGGIETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIMQM-AEARGLDPDEV  160 (310)
T ss_pred             HHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHHHH-HHHcCCCHHHH
Confidence            3344445444455778999999999999999888653222111    126889999888888776543 444432210  


Q ss_pred             -----Ccc-cccccHHHHHHHHHHHhcCC---cEEEEeeCC
Q 045087          126 -----LSE-IKDKNYEMKKIILHEYLMTK---RYLIVIDDV  157 (157)
Q Consensus       126 -----~~~-~~~~~~~~~~~~l~~~L~~k---r~LlVlDdV  157 (157)
                           ... ........++..+.+.+...   .-|||+|.+
T Consensus       161 ~~~i~i~~~~~~~~~~~lld~l~~~i~~~~~~~~lVVIDSi  201 (310)
T TIGR02236       161 LKNIYVARAYNSNHQMLLVEKAEDLIKELNNPVKLLIVDSL  201 (310)
T ss_pred             hhceEEEecCCHHHHHHHHHHHHHHHHhcCCCceEEEEecc
Confidence                 000 01111223445555555432   458999965

This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.

>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function

Probab=98.05  E-value=1.9e-05  Score=58.90  Aligned_cols=50  Identities=14%  Similarity=0.235  Sum_probs=38.8

Q ss_pred             CCCCCCccccHHHHHHHHHHHhc--CCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087           38 SSKSRDTVGLDDRMEELLDLLIE--GPPQLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        38 ~~~~~~~vGr~~~~~~l~~~L~~--~~~~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ....+.++|.+.+.+.|.+-...  .......+.+||..|.|||+|++++.+
T Consensus        23 ~~~l~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~   74 (249)
T PF05673_consen   23 PIRLDDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLN   74 (249)
T ss_pred             CCCHHHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHH
Confidence            34567899999999998664421  222456788899999999999999987

>PRK05541 adenylylsulfate kinase; Provisional

Probab=98.05  E-value=1.2e-05  Score=57.00  Aligned_cols=36  Identities=19%  Similarity=0.204  Sum_probs=28.3

Q ss_pred             CceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEE
Q 045087           64 QLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWV  101 (157)
Q Consensus        64 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv  101 (157)
                      ...+|.++|++|+||||+|+.++.  .....+...+++
T Consensus         6 ~~~~I~i~G~~GsGKst~a~~l~~--~l~~~~~~~~~~   41 (176)
T PRK05541          6 NGYVIWITGLAGSGKTTIAKALYE--RLKLKYSNVIYL   41 (176)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHHH--HHHHcCCcEEEE
Confidence            356899999999999999999988  555555555555

>PRK12323 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.05  E-value=3.5e-05  Score=64.83  Aligned_cols=46  Identities=17%  Similarity=0.123  Sum_probs=38.5

Q ss_pred             CCCccccHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087           41 SRDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        41 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ..++||.+.-++.|.+++..+. -...+.++|..|+||||+|+.+.+
T Consensus        15 FddVIGQe~vv~~L~~al~~gR-LpHA~LFtGP~GvGKTTLAriLAk   60 (700)
T PRK12323         15 FTTLVGQEHVVRALTHALEQQR-LHHAYLFTGTRGVGKTTLSRILAK   60 (700)
T ss_pred             HHHHcCcHHHHHHHHHHHHhCC-CceEEEEECCCCCCHHHHHHHHHH
Confidence            4578999999999999997764 234568899999999999998876

>PRK00149 dnaA chromosomal replication initiation protein; Reviewed

Probab=98.04  E-value=3.6e-05  Score=62.61  Aligned_cols=50  Identities=18%  Similarity=0.198  Sum_probs=32.5

Q ss_pred             ccccHH--HHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhcCccccccc
Q 045087           44 TVGLDD--RMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYF   95 (157)
Q Consensus        44 ~vGr~~--~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F   95 (157)
                      ++|...  ....+.++..........+.|+|.+|+|||+|++++.+  .+...+
T Consensus       125 v~g~~n~~a~~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~ai~~--~~~~~~  176 (450)
T PRK00149        125 VVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGN--YILEKN  176 (450)
T ss_pred             ccCCCcHHHHHHHHHHHhCcCccCCeEEEECCCCCCHHHHHHHHHH--HHHHhC
Confidence            445433  33444444433333345789999999999999999998  555443

>TIGR02239 recomb_RAD51 DNA repair protein RAD51

Probab=98.04  E-value=2.9e-05  Score=60.39  Aligned_cols=106  Identities=13%  Similarity=0.045  Sum_probs=62.2

Q ss_pred             HHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhcCcccccc----cCeeEEEEcCCCCCHHHHHHHHHHHhCCCCCC
Q 045087           51 MEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHY----FDCHAWVQEPYTCYADQILDIIIKFLMPSSRL  126 (157)
Q Consensus        51 ~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----F~~~~wv~~~~~~~~~~~l~~i~~~l~~~~~~  126 (157)
                      ...|-.+|..+-....++.|+|.+|+|||+|+..++........    -...+|++....++...+ ..++..++.....
T Consensus        82 ~~~lD~ll~gGi~~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~Rl-~~ia~~~~~~~~~  160 (316)
T TIGR02239        82 SKELDKLLGGGIETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERL-LAIAERYGLNPED  160 (316)
T ss_pred             CHHHHHHhcCCCCCCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHHH-HHHHHHcCCChHH
Confidence            35566666555466789999999999999999887652122111    125689998887887764 3444444332110


Q ss_pred             -----cccccccHHHH---HHHHHHHhc-CCcEEEEeeCC
Q 045087          127 -----SEIKDKNYEMK---KIILHEYLM-TKRYLIVIDDV  157 (157)
Q Consensus       127 -----~~~~~~~~~~~---~~~l~~~L~-~kr~LlVlDdV  157 (157)
                           .-....+.+++   +..+...+. .+--|||+|.+
T Consensus       161 ~l~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~LvVIDSI  200 (316)
T TIGR02239       161 VLDNVAYARAYNTDHQLQLLQQAAAMMSESRFALLIVDSA  200 (316)
T ss_pred             hhccEEEEecCChHHHHHHHHHHHHhhccCCccEEEEECc
Confidence                 00112233333   333344443 34569999975

This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).

>TIGR02881 spore_V_K stage V sporulation protein K

Probab=98.04  E-value=1.5e-05  Score=60.29  Aligned_cols=45  Identities=20%  Similarity=0.149  Sum_probs=32.4

Q ss_pred             CccccHHHHHHHHHHHhc-------------CCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087           43 DTVGLDDRMEELLDLLIE-------------GPPQLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        43 ~~vGr~~~~~~l~~~L~~-------------~~~~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      .++|.+...++|.+....             ..+....+.++|++|+||||+|+.+++
T Consensus         7 ~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~   64 (261)
T TIGR02881         7 RMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGK   64 (261)
T ss_pred             HhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHH
Confidence            478877777666543211             123456788999999999999999976

Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.

>PRK14960 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.01  E-value=4.5e-05  Score=64.27  Aligned_cols=47  Identities=21%  Similarity=0.166  Sum_probs=39.6

Q ss_pred             CCCCccccHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087           40 KSRDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        40 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      .-.+++|.+..++.|.+++..+. -...+.++|+.|+||||+|+.+.+
T Consensus        13 tFddVIGQe~vv~~L~~aI~~gr-l~HAyLF~GPpGvGKTTlAriLAK   59 (702)
T PRK14960         13 NFNELVGQNHVSRALSSALERGR-LHHAYLFTGTRGVGKTTIARILAK   59 (702)
T ss_pred             CHHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHH
Confidence            34678999999999999998654 245778999999999999998877

>smart00763 AAA_PrkA PrkA AAA domain

Probab=98.01  E-value=6.8e-06  Score=64.57  Aligned_cols=46  Identities=13%  Similarity=0.307  Sum_probs=39.8

Q ss_pred             CccccHHHHHHHHHHHhcC----CCCceEEEEEeCCCCcHHHHHHHHhcC
Q 045087           43 DTVGLDDRMEELLDLLIEG----PPQLSAVTILDSIGLDKTAFAAEAYSS   88 (157)
Q Consensus        43 ~~vGr~~~~~~l~~~L~~~----~~~~~vi~I~G~gGiGKTtLa~~v~~~   88 (157)
                      +++|.++.+++|.+++...    +...+++.++|++|+||||||..+.+.
T Consensus        52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~  101 (361)
T smart00763       52 DFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRG  101 (361)
T ss_pred             hccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence            7999999999999998642    235689999999999999999999883

This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.

>PRK08181 transposase; Validated

Probab=98.01  E-value=4.7e-05  Score=57.93  Aligned_cols=35  Identities=11%  Similarity=-0.027  Sum_probs=25.5

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEE
Q 045087           66 SAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQ  102 (157)
Q Consensus        66 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~  102 (157)
                      .-+.++|.+|+|||.||.++.+  ........+.|++
T Consensus       107 ~nlll~Gp~GtGKTHLa~Aia~--~a~~~g~~v~f~~  141 (269)
T PRK08181        107 ANLLLFGPPGGGKSHLAAAIGL--ALIENGWRVLFTR  141 (269)
T ss_pred             ceEEEEecCCCcHHHHHHHHHH--HHHHcCCceeeee
Confidence            3589999999999999999987  4433333345544

>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH

Probab=98.00  E-value=3.4e-05  Score=63.48  Aligned_cols=48  Identities=25%  Similarity=0.401  Sum_probs=35.5

Q ss_pred             CCCCccccHHHHHHHHHHHh---c-------CCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087           40 KSRDTVGLDDRMEELLDLLI---E-------GPPQLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        40 ~~~~~vGr~~~~~~l~~~L~---~-------~~~~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      .-.+++|.+...++|.+++.   .       +....+-+.++|++|+|||+||+.++.
T Consensus        53 ~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~  110 (495)
T TIGR01241        53 TFKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAG  110 (495)
T ss_pred             CHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHH
Confidence            34578898888777766553   1       112234588999999999999999988

HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.

>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional

Probab=98.00  E-value=1.4e-05  Score=64.59  Aligned_cols=52  Identities=19%  Similarity=0.212  Sum_probs=39.0

Q ss_pred             CCccccHHHHHHHHHHHhcC-----------CCCceEEEEEeCCCCcHHHHHHHHhcCccccccc
Q 045087           42 RDTVGLDDRMEELLDLLIEG-----------PPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYF   95 (157)
Q Consensus        42 ~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F   95 (157)
                      .++.|.+.++++|.+.+...           -....-+.++|++|+|||++|+++++  .....|
T Consensus       183 ~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~--el~~~f  245 (438)
T PTZ00361        183 ADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVAN--ETSATF  245 (438)
T ss_pred             HHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHH--hhCCCE
Confidence            45678999999998877421           12345678999999999999999999  454444

>PRK06696 uridine kinase; Validated

Probab=98.00  E-value=1.6e-05  Score=58.69  Aligned_cols=42  Identities=21%  Similarity=0.196  Sum_probs=34.8

Q ss_pred             ccHHHHHHHHHHHhc-CCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087           46 GLDDRMEELLDLLIE-GPPQLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        46 Gr~~~~~~l~~~L~~-~~~~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      .|.+.+++|.+.+.. ...+..+|+|.|.+|+||||||+.+.+
T Consensus         2 ~~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~   44 (223)
T PRK06696          2 SRKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAE   44 (223)
T ss_pred             cHHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHH
Confidence            366778888888864 334678999999999999999999987

>PLN03186 DNA repair protein RAD51 homolog; Provisional

Probab=98.00  E-value=7.5e-05  Score=58.67  Aligned_cols=106  Identities=15%  Similarity=0.128  Sum_probs=64.0

Q ss_pred             HHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhcCcccccc----cCeeEEEEcCCCCCHHHHHHHHHHHhCCCCC-
Q 045087           51 MEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHY----FDCHAWVQEPYTCYADQILDIIIKFLMPSSR-  125 (157)
Q Consensus        51 ~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----F~~~~wv~~~~~~~~~~~l~~i~~~l~~~~~-  125 (157)
                      ...|-++|..+-....++-|+|.+|+|||+||..++-.......    -..++|++...+|+++++. ++++.++.+.. 
T Consensus       109 ~~~LD~lL~GG~~~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl~-qia~~~~~~~~~  187 (342)
T PLN03186        109 SRELDKILEGGIETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRLI-QIAERFGLNGAD  187 (342)
T ss_pred             CHHHHHhhcCCCcCceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHHH-HHHHHcCCChhh
Confidence            35565656555456778899999999999999877642222111    1268899999999888764 44555543221 


Q ss_pred             -Ccc---cccccHHHHHHHHH---HHh-cCCcEEEEeeCC
Q 045087          126 -LSE---IKDKNYEMKKIILH---EYL-MTKRYLIVIDDV  157 (157)
Q Consensus       126 -~~~---~~~~~~~~~~~~l~---~~L-~~kr~LlVlDdV  157 (157)
                       ...   ....+.+++...+.   ..+ ..+--|||+|.+
T Consensus       188 ~l~~i~~~~~~~~e~~~~ll~~~~~~~~~~~~~LIVIDSI  227 (342)
T PLN03186        188 VLENVAYARAYNTDHQSELLLEAASMMAETRFALMIVDSA  227 (342)
T ss_pred             hccceEEEecCCHHHHHHHHHHHHHHhhccCCCEEEEeCc
Confidence             000   12233444433333   333 345579999975

>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=97.99  E-value=2.5e-05  Score=64.80  Aligned_cols=94  Identities=18%  Similarity=0.230  Sum_probs=63.0

Q ss_pred             CCCCccccHHHHHHHHHHHhcC----------CCCceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCCCCCH
Q 045087           40 KSRDTVGLDDRMEELLDLLIEG----------PPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPYTCYA  109 (157)
Q Consensus        40 ~~~~~vGr~~~~~~l~~~L~~~----------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~  109 (157)
                      ..+++=|.+..+.+|.+++..-          -...+=+.++|++|+|||.||+++..  +..-.|     ++++.+   
T Consensus       188 ~f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAg--el~vPf-----~~isAp---  257 (802)
T KOG0733|consen  188 SFSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAG--ELGVPF-----LSISAP---  257 (802)
T ss_pred             chhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhh--hcCCce-----Eeecch---
Confidence            4567889999999998887531          12356678999999999999999999  444333     233221   


Q ss_pred             HHHHHHHHHHhCCCCCCcccccccHHHHHHHHHHHhcCCcEEEEeeCC
Q 045087          110 DQILDIIIKFLMPSSRLSEIKDKNYEMKKIILHEYLMTKRYLIVIDDV  157 (157)
Q Consensus       110 ~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdV  157 (157)
                       +    |...         +...+++.+.+.+.+.-+.-+|++++|++
T Consensus       258 -e----ivSG---------vSGESEkkiRelF~~A~~~aPcivFiDeI  291 (802)
T KOG0733|consen  258 -E----IVSG---------VSGESEKKIRELFDQAKSNAPCIVFIDEI  291 (802)
T ss_pred             -h----hhcc---------cCcccHHHHHHHHHHHhccCCeEEEeecc
Confidence             1    1111         23344566666666666778899999875

>PRK14969 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.99  E-value=7.8e-05  Score=61.83  Aligned_cols=46  Identities=20%  Similarity=0.165  Sum_probs=38.1

Q ss_pred             CCCccccHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087           41 SRDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        41 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      .++++|.+.-++.|.+++..+. -...+.++|.+|+||||+|+.+..
T Consensus        15 f~divGq~~v~~~L~~~i~~~~-~~ha~Lf~Gp~G~GKTt~A~~lAk   60 (527)
T PRK14969         15 FSELVGQEHVVRALTNALEQQR-LHHAYLFTGTRGVGKTTLARILAK   60 (527)
T ss_pred             HHHhcCcHHHHHHHHHHHHcCC-CCEEEEEECCCCCCHHHHHHHHHH
Confidence            4678999999999999987653 234567899999999999998866

>PRK14087 dnaA chromosomal replication initiation protein; Provisional

Probab=97.99  E-value=3.1e-05  Score=62.97  Aligned_cols=44  Identities=14%  Similarity=0.169  Sum_probs=29.2

Q ss_pred             ccccHHH--HHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087           44 TVGLDDR--MEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        44 ~vGr~~~--~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ++|-...  ...+..+..........+.|+|..|+|||+|++++.+
T Consensus       118 v~g~~n~~A~~aa~~~a~~~~~~~npl~i~G~~G~GKTHLl~Ai~~  163 (450)
T PRK14087        118 VIGSSNEQAFIAVQTVSKNPGISYNPLFIYGESGMGKTHLLKAAKN  163 (450)
T ss_pred             cCCCcHHHHHHHHHHHHhCcCcccCceEEECCCCCcHHHHHHHHHH
Confidence            4565333  3333333333222345689999999999999999988

>PRK05564 DNA polymerase III subunit delta'; Validated

Probab=97.98  E-value=9.8e-05  Score=57.25  Aligned_cols=78  Identities=17%  Similarity=0.193  Sum_probs=52.5

Q ss_pred             CCccccHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhcCc----ccccccCeeEEEE-cCCCCCHHHHHHHH
Q 045087           42 RDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSSN----YMKHYFDCHAWVQ-EPYTCYADQILDII  116 (157)
Q Consensus        42 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~----~~~~~F~~~~wv~-~~~~~~~~~~l~~i  116 (157)
                      .+++|.+..++.|.+++..+. -.....++|+.|+||||+|+.++...    ....|++...|.. -+.....++ +..+
T Consensus         4 ~~i~g~~~~~~~l~~~~~~~~-~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~-ir~~   81 (313)
T PRK05564          4 HTIIGHENIKNRIKNSIIKNR-FSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDD-IRNI   81 (313)
T ss_pred             hhccCcHHHHHHHHHHHHcCC-CCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHH-HHHH
Confidence            568899999999999987653 34567889999999999999887721    1234556555554 334445555 3445


Q ss_pred             HHHhC
Q 045087          117 IKFLM  121 (157)
Q Consensus       117 ~~~l~  121 (157)
                      ...+.
T Consensus        82 ~~~~~   86 (313)
T PRK05564         82 IEEVN   86 (313)
T ss_pred             HHHHh
Confidence            55443

>PRK08939 primosomal protein DnaI; Reviewed

Probab=97.98  E-value=4.5e-05  Score=59.09  Aligned_cols=56  Identities=14%  Similarity=0.133  Sum_probs=35.1

Q ss_pred             ccHHHHHHHHHHHhcCC--CCceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEc
Q 045087           46 GLDDRMEELLDLLIEGP--PQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQE  103 (157)
Q Consensus        46 Gr~~~~~~l~~~L~~~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~  103 (157)
                      ++.........++..-.  ....-+.++|..|+|||.||.++++  .+...-..+.|+++
T Consensus       135 ~~~~~~~~~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Aia~--~l~~~g~~v~~~~~  192 (306)
T PRK08939        135 DRLDALMAALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAIAN--ELAKKGVSSTLLHF  192 (306)
T ss_pred             HHHHHHHHHHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHHHH--HHHHcCCCEEEEEH
Confidence            44444444455554311  1345788999999999999999999  44333233455554

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=97.98  E-value=0.00015  Score=62.16  Aligned_cols=108  Identities=20%  Similarity=0.156  Sum_probs=71.7

Q ss_pred             CCCccccHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCCC-CCHHHHHHHHHHH
Q 045087           41 SRDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPYT-CYADQILDIIIKF  119 (157)
Q Consensus        41 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~-~~~~~~l~~i~~~  119 (157)
                      +...+-|.    +|.+.|... .+.+.+.|..+.|-|||||+.....  .. ..-..+.|.+++.. -++..++..++..
T Consensus        18 ~~~~v~R~----rL~~~L~~~-~~~RL~li~APAGfGKttl~aq~~~--~~-~~~~~v~Wlslde~dndp~rF~~yLi~a   89 (894)
T COG2909          18 PDNYVVRP----RLLDRLRRA-NDYRLILISAPAGFGKTTLLAQWRE--LA-ADGAAVAWLSLDESDNDPARFLSYLIAA   89 (894)
T ss_pred             cccccccH----HHHHHHhcC-CCceEEEEeCCCCCcHHHHHHHHHH--hc-CcccceeEeecCCccCCHHHHHHHHHHH
Confidence            44555564    444545443 3688999999999999999998865  11 22346889998765 4688999999999


Q ss_pred             hCCCCC--Ccc-------cccccHHHHHHHHHHHhc--CCcEEEEeeC
Q 045087          120 LMPSSR--LSE-------IKDKNYEMKKIILHEYLM--TKRYLIVIDD  156 (157)
Q Consensus       120 l~~~~~--~~~-------~~~~~~~~~~~~l~~~L~--~kr~LlVlDd  156 (157)
                      +..-.+  .+.       ....+...+...+..-|.  .++++|||||
T Consensus        90 l~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDD  137 (894)
T COG2909          90 LQQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDD  137 (894)
T ss_pred             HHHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEecc
Confidence            875221  100       122334455666665553  5689999998

>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]

Probab=97.98  E-value=8.7e-05  Score=56.64  Aligned_cols=101  Identities=17%  Similarity=0.026  Sum_probs=64.5

Q ss_pred             HHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCCCCCHHHHHHHHHHH-hCCCCCCcc-cc
Q 045087           53 ELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPYTCYADQILDIIIKF-LMPSSRLSE-IK  130 (157)
Q Consensus        53 ~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~l~~i~~~-l~~~~~~~~-~~  130 (157)
                      .|-.+|-.+-+...++-|+|+.|.||||+|.+++-  ..+..-...+|+..-..+++..+.+ ++.. +.. -...+ ..
T Consensus        48 ~LD~~LGGGl~~g~ItEiyG~~gsGKT~lal~~~~--~aq~~g~~a~fIDtE~~l~p~r~~~-l~~~~~d~-l~v~~~~~  123 (279)
T COG0468          48 ALDEALGGGLPRGRITEIYGPESSGKTTLALQLVA--NAQKPGGKAAFIDTEHALDPERAKQ-LGVDLLDN-LLVSQPDT  123 (279)
T ss_pred             hHHHHhcCCcccceEEEEecCCCcchhhHHHHHHH--HhhcCCCeEEEEeCCCCCCHHHHHH-HHHhhhcc-eeEecCCC
Confidence            34444444446778999999999999999988777  4444455789999998888776543 3333 221 11000 12


Q ss_pred             cccHHHHHHHHHHHhcCCcEEEEeeCC
Q 045087          131 DKNYEMKKIILHEYLMTKRYLIVIDDV  157 (157)
Q Consensus       131 ~~~~~~~~~~l~~~L~~kr~LlVlDdV  157 (157)
                      .....+++..+.+....+--|+|+|.|
T Consensus       124 ~e~q~~i~~~~~~~~~~~i~LvVVDSv  150 (279)
T COG0468         124 GEQQLEIAEKLARSGAEKIDLLVVDSV  150 (279)
T ss_pred             HHHHHHHHHHHHHhccCCCCEEEEecC
Confidence            333345555555555554569999975

>PRK08691 DNA polymerase III subunits gamma and tau; Validated

Probab=97.98  E-value=6.1e-05  Score=63.80  Aligned_cols=46  Identities=26%  Similarity=0.247  Sum_probs=38.9

Q ss_pred             CCCccccHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087           41 SRDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        41 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ..+++|.+..++.|.+++..+. -...+.++|..|+||||+|+.+..
T Consensus        15 FddIIGQe~vv~~L~~ai~~~r-l~Ha~Lf~GP~GvGKTTlAriLAk   60 (709)
T PRK08691         15 FADLVGQEHVVKALQNALDEGR-LHHAYLLTGTRGVGKTTIARILAK   60 (709)
T ss_pred             HHHHcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCcHHHHHHHHHH
Confidence            4678999999999999988653 235678999999999999998877

>PRK04301 radA DNA repair and recombination protein RadA; Validated

Probab=97.97  E-value=6e-05  Score=58.58  Aligned_cols=105  Identities=15%  Similarity=0.122  Sum_probs=62.0

Q ss_pred             HHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhcCccccccc----CeeEEEEcCCCCCHHHHHHHHHHHhCCCCCC-
Q 045087           52 EELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYF----DCHAWVQEPYTCYADQILDIIIKFLMPSSRL-  126 (157)
Q Consensus        52 ~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F----~~~~wv~~~~~~~~~~~l~~i~~~l~~~~~~-  126 (157)
                      ..+.++|..+-....++-|+|.+|+|||+++..++-.......+    ...+|++....+++..+.+. +..++.+... 
T Consensus        89 ~~lD~~l~GGi~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~~~-~~~~g~~~~~~  167 (317)
T PRK04301         89 KELDELLGGGIETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIEQM-AEALGLDPDEV  167 (317)
T ss_pred             HHHHHHhcCCccCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHHHH-HHHcCCChHhh
Confidence            34444454444567799999999999999998886532221111    36889999988888776544 3444332100 


Q ss_pred             -cc---ccccc---HHHHHHHHHHHhcC--CcEEEEeeCC
Q 045087          127 -SE---IKDKN---YEMKKIILHEYLMT--KRYLIVIDDV  157 (157)
Q Consensus       127 -~~---~~~~~---~~~~~~~l~~~L~~--kr~LlVlDdV  157 (157)
                       ..   ....+   ...++..+...+..  +--|||+|.+
T Consensus       168 l~~i~~~~~~~~~~~~~~~~~l~~~i~~~~~~~lvVIDSi  207 (317)
T PRK04301        168 LDNIHVARAYNSDHQMLLAEKAEELIKEGENIKLVIVDSL  207 (317)
T ss_pred             hccEEEEeCCCHHHHHHHHHHHHHHHhccCceeEEEEECc
Confidence             00   11111   22345556666653  3459999975

>PRK06645 DNA polymerase III subunits gamma and tau; Validated

Probab=97.97  E-value=1.5e-05  Score=65.63  Aligned_cols=48  Identities=13%  Similarity=0.049  Sum_probs=39.6

Q ss_pred             CCCCccccHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhcC
Q 045087           40 KSRDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSS   88 (157)
Q Consensus        40 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~   88 (157)
                      ...+++|.+..+..|.+.+..+. -...+.++|.+|+||||+|+.+++.
T Consensus        19 ~f~dliGq~~vv~~L~~ai~~~r-i~~a~Lf~Gp~G~GKTT~ArilAk~   66 (507)
T PRK06645         19 NFAELQGQEVLVKVLSYTILNDR-LAGGYLLTGIRGVGKTTSARIIAKA   66 (507)
T ss_pred             CHHHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHH
Confidence            34678999999999988877653 3457889999999999999999873

>cd01120 RecA-like_NTPases RecA-like NTPases

Probab=97.97  E-value=2.4e-05  Score=53.95  Aligned_cols=40  Identities=13%  Similarity=0.027  Sum_probs=29.7

Q ss_pred             EEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCCCCC
Q 045087           67 AVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPYTCY  108 (157)
Q Consensus        67 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~  108 (157)
                      ++.|+|.+|+|||+++..+..  .....-...+|++......
T Consensus         1 ~~~i~G~~G~GKT~l~~~i~~--~~~~~~~~v~~~~~e~~~~   40 (165)
T cd01120           1 LILVFGPTGSGKTTLALQLAL--NIATKGGKVVYVDIEEEIE   40 (165)
T ss_pred             CeeEeCCCCCCHHHHHHHHHH--HHHhcCCEEEEEECCcchH
Confidence            367899999999999999987  3433345677887766543

This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.

>PRK14970 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.97  E-value=8.3e-05  Score=58.82  Aligned_cols=46  Identities=22%  Similarity=0.186  Sum_probs=39.1

Q ss_pred             CCCccccHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087           41 SRDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        41 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      -.+++|.+..++.+.+++..+. -.+.+.++|++|+|||++|+.+.+
T Consensus        16 ~~~iig~~~~~~~l~~~i~~~~-~~~~~L~~G~~G~GKt~~a~~la~   61 (367)
T PRK14970         16 FDDVVGQSHITNTLLNAIENNH-LAQALLFCGPRGVGKTTCARILAR   61 (367)
T ss_pred             HHhcCCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHH
Confidence            4678999999999999997653 345788999999999999999877

>PRK14950 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.96  E-value=2.9e-05  Score=65.15  Aligned_cols=46  Identities=22%  Similarity=0.209  Sum_probs=38.6

Q ss_pred             CCCccccHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087           41 SRDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        41 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ..+++|.+..++.|.+++..+. -...+.++|..|+||||+|+.+.+
T Consensus        15 ~~eiiGq~~~~~~L~~~i~~~~-i~~a~Lf~Gp~G~GKTtlA~~lA~   60 (585)
T PRK14950         15 FAELVGQEHVVQTLRNAIAEGR-VAHAYLFTGPRGVGKTSTARILAK   60 (585)
T ss_pred             HHHhcCCHHHHHHHHHHHHhCC-CceEEEEECCCCCCHHHHHHHHHH
Confidence            4679999999999999887653 234567899999999999999876

>PRK14958 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.96  E-value=8.1e-05  Score=61.45  Aligned_cols=46  Identities=15%  Similarity=0.109  Sum_probs=38.6

Q ss_pred             CCCccccHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087           41 SRDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        41 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ..++||.+.-++.|.+++..+. -...+.++|++|+||||+|+.+..
T Consensus        15 f~divGq~~v~~~L~~~~~~~~-l~ha~Lf~Gp~G~GKTt~A~~lAk   60 (509)
T PRK14958         15 FQEVIGQAPVVRALSNALDQQY-LHHAYLFTGTRGVGKTTISRILAK   60 (509)
T ss_pred             HHHhcCCHHHHHHHHHHHHhCC-CCeeEEEECCCCCCHHHHHHHHHH
Confidence            4678999999999999997653 234567899999999999998877

>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional

Probab=97.96  E-value=3.6e-05  Score=66.21  Aligned_cols=44  Identities=18%  Similarity=0.246  Sum_probs=37.3

Q ss_pred             CCccccHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087           42 RDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        42 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ..++||+.+++++...|....  ..-+.++|.+|+|||++|+.++.
T Consensus       186 ~~liGR~~ei~~~i~iL~r~~--~~n~LLvGppGvGKT~lae~la~  229 (758)
T PRK11034        186 DPLIGREKELERAIQVLCRRR--KNNPLLVGESGVGKTAIAEGLAW  229 (758)
T ss_pred             CcCcCCCHHHHHHHHHHhccC--CCCeEEECCCCCCHHHHHHHHHH
Confidence            579999999999999887743  23446899999999999999887

>CHL00181 cbbX CbbX; Provisional

Probab=97.96  E-value=8.7e-05  Score=56.99  Aligned_cols=45  Identities=20%  Similarity=0.192  Sum_probs=30.5

Q ss_pred             CccccHHHHHHHHHHHh---c-------C---CCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087           43 DTVGLDDRMEELLDLLI---E-------G---PPQLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        43 ~~vGr~~~~~~l~~~L~---~-------~---~~~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      .++|.+...++|.++..   .       +   ......+.++|.+|+||||+|+.+++
T Consensus        24 ~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~   81 (287)
T CHL00181         24 ELVGLAPVKTRIREIAALLLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMAD   81 (287)
T ss_pred             hcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHH
Confidence            56777666665544431   1       0   11234588899999999999999977

>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]

Probab=97.96  E-value=1.2e-05  Score=61.13  Aligned_cols=53  Identities=19%  Similarity=0.198  Sum_probs=41.6

Q ss_pred             CCCccccHHHHHHHHHHHhc---CCCCceEEEEEeCCCCcHHHHHHHHhcCccccccc
Q 045087           41 SRDTVGLDDRMEELLDLLIE---GPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYF   95 (157)
Q Consensus        41 ~~~~vGr~~~~~~l~~~L~~---~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F   95 (157)
                      -.+|+|.++-.++|.-.+..   .....-.+.++|++|.||||||..+.+  ++...+
T Consensus        25 l~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~--Emgvn~   80 (332)
T COG2255          25 LDEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIAN--ELGVNL   80 (332)
T ss_pred             HHHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHH--HhcCCe
Confidence            46799999999988777643   234567899999999999999999998  554433

>TIGR00602 rad24 checkpoint protein rad24

Probab=97.95  E-value=1.8e-05  Score=66.70  Aligned_cols=48  Identities=13%  Similarity=0.060  Sum_probs=40.0

Q ss_pred             CCCCccccHHHHHHHHHHHhcCC---CCceEEEEEeCCCCcHHHHHHHHhc
Q 045087           40 KSRDTVGLDDRMEELLDLLIEGP---PQLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        40 ~~~~~vGr~~~~~~l~~~L~~~~---~~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ...+++|.++.+++|..|+....   ....++.++|++|+||||+++.++.
T Consensus        82 ~ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~  132 (637)
T TIGR00602        82 TQHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSK  132 (637)
T ss_pred             CHHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHH
Confidence            34679999999999999986532   2345799999999999999999987

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PRK14964 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.95  E-value=9.5e-05  Score=60.64  Aligned_cols=47  Identities=19%  Similarity=0.166  Sum_probs=38.5

Q ss_pred             CCCCccccHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087           40 KSRDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        40 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      .-.+++|.+..++.|.+.+..+. -...+.++|+.|+||||+|+.+..
T Consensus        11 ~f~dliGQe~vv~~L~~a~~~~r-i~ha~Lf~Gp~G~GKTT~ArilAk   57 (491)
T PRK14964         11 SFKDLVGQDVLVRILRNAFTLNK-IPQSILLVGASGVGKTTCARIISL   57 (491)
T ss_pred             CHHHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCccHHHHHHHHHH
Confidence            34678999999999998887653 234788999999999999988865

>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A

Probab=97.94  E-value=7.8e-06  Score=54.22  Aligned_cols=21  Identities=24%  Similarity=0.267  Sum_probs=19.6

Q ss_pred             EEEEEeCCCCcHHHHHHHHhc
Q 045087           67 AVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        67 vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      +|.|.|++|+||||+|+.+.+
T Consensus         1 vI~I~G~~gsGKST~a~~La~   21 (121)
T PF13207_consen    1 VIIISGPPGSGKSTLAKELAE   21 (121)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHH
Confidence            588999999999999999987

...

>TIGR00763 lon ATP-dependent protease La

Probab=97.93  E-value=4.1e-05  Score=66.22  Aligned_cols=52  Identities=21%  Similarity=0.337  Sum_probs=39.7

Q ss_pred             CCccccHHHHHHHHHHHhc----CCCCceEEEEEeCCCCcHHHHHHHHhcCccccccc
Q 045087           42 RDTVGLDDRMEELLDLLIE----GPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYF   95 (157)
Q Consensus        42 ~~~vGr~~~~~~l~~~L~~----~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F   95 (157)
                      .+++|.+...+.+.+++..    ...+.+++.++|++|+|||++|+.+.+  .+...|
T Consensus       320 ~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~--~l~~~~  375 (775)
T TIGR00763       320 EDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAK--ALNRKF  375 (775)
T ss_pred             hhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHH--HhcCCe
Confidence            4578999999998887642    223446899999999999999999988  444333

This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.

>PRK14951 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.92  E-value=8.6e-05  Score=62.46  Aligned_cols=47  Identities=17%  Similarity=0.169  Sum_probs=38.6

Q ss_pred             CCCCccccHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087           40 KSRDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        40 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ..++++|.+.-++.|.+++..+. -...+.++|..|+||||+|+.+.+
T Consensus        14 ~f~dviGQe~vv~~L~~~l~~~r-l~ha~Lf~Gp~GvGKTtlAr~lAk   60 (618)
T PRK14951         14 SFSEMVGQEHVVQALTNALTQQR-LHHAYLFTGTRGVGKTTVSRILAK   60 (618)
T ss_pred             CHHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHH
Confidence            34678999999999999988764 235668899999999999998855

>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau

Probab=97.91  E-value=1.6e-05  Score=62.30  Aligned_cols=47  Identities=19%  Similarity=0.188  Sum_probs=38.7

Q ss_pred             CCCCccccHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087           40 KSRDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        40 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ...+++|.+..++.|.+++..+. -...+.++|.+|+||||+|+.+..
T Consensus        12 ~~~~iig~~~~~~~l~~~~~~~~-~~~~~Ll~G~~G~GKt~~a~~la~   58 (355)
T TIGR02397        12 TFEDVIGQEHIVQTLKNAIKNGR-IAHAYLFSGPRGTGKTSIARIFAK   58 (355)
T ss_pred             cHhhccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHH
Confidence            34578999999999999887653 235678899999999999988866

This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.

>CHL00176 ftsH cell division protein; Validated

Probab=97.91  E-value=4.4e-05  Score=64.53  Aligned_cols=47  Identities=21%  Similarity=0.295  Sum_probs=35.4

Q ss_pred             CCCccccHHHHHHHHHHHh---cC-------CCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087           41 SRDTVGLDDRMEELLDLLI---EG-------PPQLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        41 ~~~~vGr~~~~~~l~~~L~---~~-------~~~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ..++.|.++..++|.+.+.   ..       ....+-+.++|++|+|||+||++++.
T Consensus       182 f~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~  238 (638)
T CHL00176        182 FRDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAG  238 (638)
T ss_pred             HHhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHH
Confidence            3568898888877766652   11       12245688999999999999999988

>PRK14955 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.90  E-value=0.0001  Score=59.02  Aligned_cols=47  Identities=17%  Similarity=0.038  Sum_probs=38.4

Q ss_pred             CCCCccccHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087           40 KSRDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        40 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ...+++|.+..++.|.+++..+. -...+.++|++|+||||+|..+.+
T Consensus        14 ~~~eiiGq~~~~~~L~~~~~~~~-~~ha~lf~Gp~G~GKtt~A~~~a~   60 (397)
T PRK14955         14 KFADITAQEHITRTIQNSLRMGR-VGHGYIFSGLRGVGKTTAARVFAK   60 (397)
T ss_pred             cHhhccChHHHHHHHHHHHHhCC-cceeEEEECCCCCCHHHHHHHHHH
Confidence            34678999999999999887653 234577899999999999998876

>PTZ00035 Rad51 protein; Provisional

Probab=97.90  E-value=0.00025  Score=55.73  Aligned_cols=106  Identities=14%  Similarity=0.088  Sum_probs=61.5

Q ss_pred             HHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhcCcccc---c-ccCeeEEEEcCCCCCHHHHHHHHHHHhCCCCC-
Q 045087           51 MEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSSNYMK---H-YFDCHAWVQEPYTCYADQILDIIIKFLMPSSR-  125 (157)
Q Consensus        51 ~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~---~-~F~~~~wv~~~~~~~~~~~l~~i~~~l~~~~~-  125 (157)
                      ...|-++|..+-....++.|+|.+|+|||+|+..++-...+.   . .=...+|++....++++++ .+++..++.... 
T Consensus       104 ~~~LD~lLgGGi~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri-~~ia~~~g~~~~~  182 (337)
T PTZ00035        104 STQLDKLLGGGIETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERI-VQIAERFGLDPED  182 (337)
T ss_pred             cHHHHHHhCCCCCCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHHH-HHHHHHhCCChHh
Confidence            355656665554667899999999999999998886532211   0 1134569988777777764 444555443211 


Q ss_pred             ----CcccccccHHHHHHHH---HHHhc-CCcEEEEeeCC
Q 045087          126 ----LSEIKDKNYEMKKIIL---HEYLM-TKRYLIVIDDV  157 (157)
Q Consensus       126 ----~~~~~~~~~~~~~~~l---~~~L~-~kr~LlVlDdV  157 (157)
                          ..-....+.+++...+   ...+. .+--|||+|.+
T Consensus       183 ~l~nI~~~~~~~~e~~~~~l~~~~~~l~~~~~~lvVIDSi  222 (337)
T PTZ00035        183 VLDNIAYARAYNHEHQMQLLSQAAAKMAEERFALLIVDSA  222 (337)
T ss_pred             HhhceEEEccCCHHHHHHHHHHHHHHhhccCccEEEEECc
Confidence                0001223334444333   33343 44569999975

>PRK06067 flagellar accessory protein FlaH; Validated

Probab=97.89  E-value=0.00013  Score=54.17  Aligned_cols=101  Identities=18%  Similarity=0.140  Sum_probs=61.2

Q ss_pred             HHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCCCCCHHHHHHHHHHHhCCCCC------
Q 045087           52 EELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPYTCYADQILDIIIKFLMPSSR------  125 (157)
Q Consensus        52 ~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~l~~i~~~l~~~~~------  125 (157)
                      ..|-++|..+-+...++.|+|.+|+|||++|.++... .++ .=..++|++...  ++.+++.++ .+++-...      
T Consensus        12 ~~LD~~l~gG~~~g~~~~i~G~~GsGKt~l~~~~~~~-~~~-~g~~~~y~~~e~--~~~~~~~~~-~~~g~~~~~~~~~g   86 (234)
T PRK06067         12 EELDRKLGGGIPFPSLILIEGDHGTGKSVLSQQFVYG-ALK-QGKKVYVITTEN--TSKSYLKQM-ESVKIDISDFFLWG   86 (234)
T ss_pred             HHHHHhhCCCCcCCcEEEEECCCCCChHHHHHHHHHH-HHh-CCCEEEEEEcCC--CHHHHHHHH-HHCCCChhHHHhCC
Confidence            4455555555566789999999999999999888542 222 234677888765  345555553 23321100      


Q ss_pred             -C------c---ccccccHHHHHHHHHHHhcC-CcEEEEeeCC
Q 045087          126 -L------S---EIKDKNYEMKKIILHEYLMT-KRYLIVIDDV  157 (157)
Q Consensus       126 -~------~---~~~~~~~~~~~~~l~~~L~~-kr~LlVlDdV  157 (157)
                       .      +   .....+.++++..+.+.+.. +.-++|+|.+
T Consensus        87 ~l~i~~~~~~~~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~  129 (234)
T PRK06067         87 YLRIFPLNTEGFEWNSTLANKLLELIIEFIKSKREDVIIIDSL  129 (234)
T ss_pred             CceEEeccccccccCcchHHHHHHHHHHHHHhcCCCEEEEecH
Confidence             0      0   01123346777777777754 5568899863

>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family

Probab=97.89  E-value=0.00017  Score=53.74  Aligned_cols=61  Identities=15%  Similarity=0.125  Sum_probs=41.8

Q ss_pred             HHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCCCCCHHHHHHHH
Q 045087           52 EELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPYTCYADQILDII  116 (157)
Q Consensus        52 ~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~l~~i  116 (157)
                      ..|-++|..+-+...++.|.|.+|+|||++|.++... .. ..-..++|++...  ++.++++.+
T Consensus         8 ~~LD~~l~GG~~~gs~~lI~G~pGsGKT~la~~~l~~-~~-~~ge~~lyvs~ee--~~~~i~~~~   68 (237)
T TIGR03877         8 PGMDEILHGGIPERNVVLLSGGPGTGKSIFSQQFLWN-GL-QMGEPGIYVALEE--HPVQVRRNM   68 (237)
T ss_pred             HhHHHHhcCCCcCCeEEEEEcCCCCCHHHHHHHHHHH-HH-HcCCcEEEEEeeC--CHHHHHHHH
Confidence            4455556555567789999999999999999776441 22 2345678888765  555665554

Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.

>PRK09183 transposase/IS protein; Provisional

Probab=97.89  E-value=0.00025  Score=53.68  Aligned_cols=23  Identities=22%  Similarity=0.225  Sum_probs=20.3

Q ss_pred             ceEEEEEeCCCCcHHHHHHHHhc
Q 045087           65 LSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        65 ~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ...+.|+|.+|+|||+||..+..
T Consensus       102 ~~~v~l~Gp~GtGKThLa~al~~  124 (259)
T PRK09183        102 NENIVLLGPSGVGKTHLAIALGY  124 (259)
T ss_pred             CCeEEEEeCCCCCHHHHHHHHHH
Confidence            34678999999999999999976

>PRK07667 uridine kinase; Provisional

Probab=97.88  E-value=3.6e-05  Score=55.67  Aligned_cols=37  Identities=19%  Similarity=0.160  Sum_probs=30.3

Q ss_pred             HHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087           51 MEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        51 ~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ++.+.+.+........+|+|.|.+|.||||+|..+..
T Consensus         3 ~~~~~~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~   39 (193)
T PRK07667          3 TNELINIMKKHKENRFILGIDGLSRSGKTTFVANLKE   39 (193)
T ss_pred             HHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence            4566666665555668999999999999999999987

>PRK06526 transposase; Provisional

Probab=97.88  E-value=0.00014  Score=54.94  Aligned_cols=23  Identities=26%  Similarity=0.150  Sum_probs=20.5

Q ss_pred             ceEEEEEeCCCCcHHHHHHHHhc
Q 045087           65 LSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        65 ~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ..-+.++|.+|+|||+||..+..
T Consensus        98 ~~nlll~Gp~GtGKThLa~al~~  120 (254)
T PRK06526         98 KENVVFLGPPGTGKTHLAIGLGI  120 (254)
T ss_pred             CceEEEEeCCCCchHHHHHHHHH
Confidence            45689999999999999999977

>PRK12422 chromosomal replication initiation protein; Provisional

Probab=97.88  E-value=0.00016  Score=58.72  Aligned_cols=36  Identities=14%  Similarity=0.170  Sum_probs=26.2

Q ss_pred             ceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEE
Q 045087           65 LSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQ  102 (157)
Q Consensus        65 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~  102 (157)
                      ...+.|+|.+|+|||+|++++++  .+.......++++
T Consensus       141 ~npl~L~G~~G~GKTHLl~Ai~~--~l~~~~~~v~yi~  176 (445)
T PRK12422        141 FNPIYLFGPEGSGKTHLMQAAVH--ALRESGGKILYVR  176 (445)
T ss_pred             CceEEEEcCCCCCHHHHHHHHHH--HHHHcCCCEEEee
Confidence            45788999999999999999998  4433322334444

>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily

Probab=97.87  E-value=3.3e-05  Score=66.41  Aligned_cols=46  Identities=20%  Similarity=0.213  Sum_probs=36.6

Q ss_pred             CCccccHHHHHHHHHHHhcC-----------CCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087           42 RDTVGLDDRMEELLDLLIEG-----------PPQLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        42 ~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      +++.|.+..+++|.+++...           -...+-+.++|.+|+|||+||+.+++
T Consensus       178 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~  234 (733)
T TIGR01243       178 EDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVAN  234 (733)
T ss_pred             HHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHH
Confidence            45889999999998877421           12245688999999999999999988

This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.

>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX

Probab=97.87  E-value=0.00014  Score=55.79  Aligned_cols=22  Identities=18%  Similarity=0.138  Sum_probs=19.0

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhc
Q 045087           66 SAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        66 ~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ..+.++|.+|+|||++|+.+.+
T Consensus        59 ~~vll~G~pGTGKT~lA~~ia~   80 (284)
T TIGR02880        59 LHMSFTGNPGTGKTTVALRMAQ   80 (284)
T ss_pred             ceEEEEcCCCCCHHHHHHHHHH
Confidence            3688999999999999977765

Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.

>PRK05896 DNA polymerase III subunits gamma and tau; Validated

Probab=97.87  E-value=5.6e-05  Score=63.18  Aligned_cols=46  Identities=15%  Similarity=0.159  Sum_probs=38.6

Q ss_pred             CCCccccHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087           41 SRDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        41 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      -.+++|++..++.|.+.+..+. -.+.+.++|+.|+||||+|+.+.+
T Consensus        15 F~dIIGQe~iv~~L~~aI~~~r-l~hA~Lf~GP~GvGKTTlA~~lAk   60 (605)
T PRK05896         15 FKQIIGQELIKKILVNAILNNK-LTHAYIFSGPRGIGKTSIAKIFAK   60 (605)
T ss_pred             HHHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHH
Confidence            4678999999999999887653 235678999999999999998876

>cd01121 Sms Sms (bacterial radA) DNA repair protein

Probab=97.87  E-value=0.00012  Score=58.14  Aligned_cols=99  Identities=22%  Similarity=0.150  Sum_probs=57.6

Q ss_pred             HHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCCCCCHHHHHHHHHHHhCCCCC-Cccc
Q 045087           51 MEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPYTCYADQILDIIIKFLMPSSR-LSEI  129 (157)
Q Consensus        51 ~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~l~~i~~~l~~~~~-~~~~  129 (157)
                      +.+|-+.|..+-....++.|.|.+|+|||||+.+++.  .....-...+|++...  +..++.. -+..++...+ ..-.
T Consensus        68 i~eLD~vLgGGi~~GslvLI~G~pG~GKStLllq~a~--~~a~~g~~VlYvs~EE--s~~qi~~-Ra~rlg~~~~~l~l~  142 (372)
T cd01121          68 IEELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAA--RLAKRGGKVLYVSGEE--SPEQIKL-RADRLGISTENLYLL  142 (372)
T ss_pred             CHHHHHhhcCCccCCeEEEEEeCCCCCHHHHHHHHHH--HHHhcCCeEEEEECCc--CHHHHHH-HHHHcCCCcccEEEE
Confidence            3556565655445567999999999999999998876  3333334567777644  3334322 2344443211 0001


Q ss_pred             ccccHHHHHHHHHHHhcCCcEEEEeeCC
Q 045087          130 KDKNYEMKKIILHEYLMTKRYLIVIDDV  157 (157)
Q Consensus       130 ~~~~~~~~~~~l~~~L~~kr~LlVlDdV  157 (157)
                      ...+.+++.+.+.+   .+.-+||+|.+
T Consensus       143 ~e~~le~I~~~i~~---~~~~lVVIDSI  167 (372)
T cd01121         143 AETNLEDILASIEE---LKPDLVIIDSI  167 (372)
T ss_pred             ccCcHHHHHHHHHh---cCCcEEEEcch
Confidence            23344555554432   46678999974

This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.

>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif

Probab=97.85  E-value=3.1e-05  Score=55.40  Aligned_cols=36  Identities=11%  Similarity=-0.009  Sum_probs=24.3

Q ss_pred             ceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEE
Q 045087           65 LSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQ  102 (157)
Q Consensus        65 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~  102 (157)
                      ..-+.++|.+|+|||.||.++.+  +...+=..+.|+.
T Consensus        47 ~~~l~l~G~~G~GKThLa~ai~~--~~~~~g~~v~f~~   82 (178)
T PF01695_consen   47 GENLILYGPPGTGKTHLAVAIAN--EAIRKGYSVLFIT   82 (178)
T ss_dssp             --EEEEEESTTSSHHHHHHHHHH--HHHHTT--EEEEE
T ss_pred             CeEEEEEhhHhHHHHHHHHHHHH--HhccCCcceeEee
Confidence            45689999999999999999987  3333222345554

They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.

>PRK09111 DNA polymerase III subunits gamma and tau; Validated

Probab=97.85  E-value=3.3e-05  Score=64.79  Aligned_cols=48  Identities=19%  Similarity=0.183  Sum_probs=40.0

Q ss_pred             CCCCccccHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhcC
Q 045087           40 KSRDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSS   88 (157)
Q Consensus        40 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~   88 (157)
                      ...+++|.+..++.|.+.+..+. -...+.++|+.|+||||+|+.+.+.
T Consensus        22 ~f~dliGq~~~v~~L~~~~~~gr-i~ha~L~~Gp~GvGKTt~Ar~lAk~   69 (598)
T PRK09111         22 TFDDLIGQEAMVRTLTNAFETGR-IAQAFMLTGVRGVGKTTTARILARA   69 (598)
T ss_pred             CHHHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHh
Confidence            44679999999999999987653 2446788999999999999998773

>PRK09519 recA DNA recombination protein RecA; Reviewed

Probab=97.84  E-value=9.9e-05  Score=63.40  Aligned_cols=99  Identities=20%  Similarity=0.081  Sum_probs=63.5

Q ss_pred             HHHHHHHh-cCCCCceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCCCCCHHHHHHHHHHHhCCCCC-Cccc
Q 045087           52 EELLDLLI-EGPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPYTCYADQILDIIIKFLMPSSR-LSEI  129 (157)
Q Consensus        52 ~~l~~~L~-~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~l~~i~~~l~~~~~-~~~~  129 (157)
                      ..|-.+|. .+-....++-|+|.+|+||||||..++.  .....-..++|+.....++..     .+..++.+.. .--.
T Consensus        46 ~~LD~lLg~GGip~GsiteI~G~~GsGKTtLal~~~~--~a~~~G~~v~yId~E~t~~~~-----~A~~lGvDl~~llv~  118 (790)
T PRK09519         46 IALDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVA--NAQAAGGVAAFIDAEHALDPD-----YAKKLGVDTDSLLVS  118 (790)
T ss_pred             HHHHHhhcCCCccCCeEEEEECCCCCCHHHHHHHHHH--HHHHcCCcEEEECCccchhHH-----HHHHcCCChhHeEEe
Confidence            55556665 3445678999999999999999977655  222333567899887777743     4555554321 0002


Q ss_pred             ccccHHHHHHHHHHHhc-CCcEEEEeeCC
Q 045087          130 KDKNYEMKKIILHEYLM-TKRYLIVIDDV  157 (157)
Q Consensus       130 ~~~~~~~~~~~l~~~L~-~kr~LlVlDdV  157 (157)
                      ...+.++.+..+...++ ++--|||+|.|
T Consensus       119 ~~~~~E~~l~~i~~lv~~~~~~LVVIDSI  147 (790)
T PRK09519        119 QPDTGEQALEIADMLIRSGALDIVVIDSV  147 (790)
T ss_pred             cCCCHHHHHHHHHHHhhcCCCeEEEEcch
Confidence            23344666667777664 45678999975

>PRK08233 hypothetical protein; Provisional

Probab=97.83  E-value=0.00012  Score=51.91  Aligned_cols=24  Identities=21%  Similarity=0.165  Sum_probs=21.6

Q ss_pred             ceEEEEEeCCCCcHHHHHHHHhcC
Q 045087           65 LSAVTILDSIGLDKTAFAAEAYSS   88 (157)
Q Consensus        65 ~~vi~I~G~gGiGKTtLa~~v~~~   88 (157)
                      ..+|+|.|.+|+||||||..+...
T Consensus         3 ~~iI~I~G~~GsGKtTla~~L~~~   26 (182)
T PRK08233          3 TKIITIAAVSGGGKTTLTERLTHK   26 (182)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhh
Confidence            468999999999999999999873

>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA

Probab=97.82  E-value=7.5e-05  Score=64.23  Aligned_cols=46  Identities=15%  Similarity=0.284  Sum_probs=37.0

Q ss_pred             CCccccHHHHHHHHHHHhcC-------CCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087           42 RDTVGLDDRMEELLDLLIEG-------PPQLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        42 ~~~vGr~~~~~~l~~~L~~~-------~~~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ..++|.+..++.|.+.+...       ......+.++|++|+|||+||+.+++
T Consensus       454 ~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~  506 (731)
T TIGR02639       454 AKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAE  506 (731)
T ss_pred             cceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHH
Confidence            57899999999998887631       11234678999999999999999988

>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=97.81  E-value=3.9e-05  Score=59.36  Aligned_cols=79  Identities=10%  Similarity=0.089  Sum_probs=47.3

Q ss_pred             ceEEEEEeCCCCcHHHHHHHHhcCcccc--cccCeeEEEEcCCCCCHHHHHHHHHHHhCCCCCCcccccccHHHHHHHHH
Q 045087           65 LSAVTILDSIGLDKTAFAAEAYSSNYMK--HYFDCHAWVQEPYTCYADQILDIIIKFLMPSSRLSEIKDKNYEMKKIILH  142 (157)
Q Consensus        65 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~--~~F~~~~wv~~~~~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~l~  142 (157)
                      -++|.+.|+||.|||+|+++++++..++  ++|....-+.+..    ..++.++...          ...-...+.+.|.
T Consensus       177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEins----hsLFSKWFsE----------SgKlV~kmF~kI~  242 (423)
T KOG0744|consen  177 NRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINS----HSLFSKWFSE----------SGKLVAKMFQKIQ  242 (423)
T ss_pred             eeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEeh----hHHHHHHHhh----------hhhHHHHHHHHHH
Confidence            4789999999999999999999965544  3444444443322    2333333321          1233455666666


Q ss_pred             HHhcCCcE--EEEeeCC
Q 045087          143 EYLMTKRY--LIVIDDV  157 (157)
Q Consensus       143 ~~L~~kr~--LlVlDdV  157 (157)
                      +.+.++.+  ++.+|.|
T Consensus       243 ELv~d~~~lVfvLIDEV  259 (423)
T KOG0744|consen  243 ELVEDRGNLVFVLIDEV  259 (423)
T ss_pred             HHHhCCCcEEEEEeHHH
Confidence            66666553  4445544

>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=97.80  E-value=0.00014  Score=52.85  Aligned_cols=54  Identities=17%  Similarity=0.086  Sum_probs=31.2

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCCC-CCHHHHHHHHHHHhC
Q 045087           66 SAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPYT-CYADQILDIIIKFLM  121 (157)
Q Consensus        66 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~-~~~~~~l~~i~~~l~  121 (157)
                      +++.++|+.|+||||.+-+++..  .+..-.....++.... ....+-++..++.++
T Consensus         2 ~vi~lvGptGvGKTTt~aKLAa~--~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~   56 (196)
T PF00448_consen    2 KVIALVGPTGVGKTTTIAKLAAR--LKLKGKKVALISADTYRIGAVEQLKTYAEILG   56 (196)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHH--HHHTT--EEEEEESTSSTHHHHHHHHHHHHHT
T ss_pred             EEEEEECCCCCchHhHHHHHHHH--HhhccccceeecCCCCCccHHHHHHHHHHHhc
Confidence            68999999999999888777663  2222223445554322 223344444455444

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....

>PRK07940 DNA polymerase III subunit delta'; Validated

Probab=97.80  E-value=0.0002  Score=57.34  Aligned_cols=47  Identities=17%  Similarity=0.066  Sum_probs=38.5

Q ss_pred             CCCccccHHHHHHHHHHHhcCCC--------CceEEEEEeCCCCcHHHHHHHHhc
Q 045087           41 SRDTVGLDDRMEELLDLLIEGPP--------QLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        41 ~~~~vGr~~~~~~l~~~L~~~~~--------~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      .++++|.+..++.|.+.+..+..        -.+-+.++|++|+|||++|+.+..
T Consensus         4 f~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~   58 (394)
T PRK07940          4 WDDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAA   58 (394)
T ss_pred             hhhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHH
Confidence            35789999999999999976531        245688999999999999998865

>PRK07994 DNA polymerase III subunits gamma and tau; Validated

Probab=97.79  E-value=0.00017  Score=61.01  Aligned_cols=47  Identities=21%  Similarity=0.175  Sum_probs=38.8

Q ss_pred             CCCCccccHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087           40 KSRDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        40 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ...+++|.+.-++.|.+.+..+. -...+.++|..|+||||+|+.+..
T Consensus        14 ~f~divGQe~vv~~L~~~l~~~r-l~hAyLf~Gp~GvGKTTlAr~lAk   60 (647)
T PRK07994         14 TFAEVVGQEHVLTALANALDLGR-LHHAYLFSGTRGVGKTTIARLLAK   60 (647)
T ss_pred             CHHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHH
Confidence            34679999999999999887654 234467899999999999999977

>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2

Probab=97.79  E-value=0.00025  Score=51.23  Aligned_cols=81  Identities=10%  Similarity=-0.034  Sum_probs=44.4

Q ss_pred             EEEEEeCCCCcHHHHHHHHhcCcccccc-cC---eeEEEEcCCCCCHHHHHHHHHHHhCCCCCCcccccccHHHHHHHHH
Q 045087           67 AVTILDSIGLDKTAFAAEAYSSNYMKHY-FD---CHAWVQEPYTCYADQILDIIIKFLMPSSRLSEIKDKNYEMKKIILH  142 (157)
Q Consensus        67 vi~I~G~gGiGKTtLa~~v~~~~~~~~~-F~---~~~wv~~~~~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~l~  142 (157)
                      +|+|.|.+|+||||+|+.+..  .+... +.   ....++.............- ...............+.+.+.+.|.
T Consensus         1 IIgI~G~sgSGKTTla~~L~~--~L~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~~~p~a~d~~~l~~~l~   77 (194)
T PF00485_consen    1 IIGIAGPSGSGKTTLAKRLAQ--ILNKRGIPAMEMDIILSLDDFYDDYHLRDRK-GRGENRYNFDHPDAFDFDLLKEDLK   77 (194)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH--HHTTCTTTCCCSEEEEEGGGGBHHHHHHHHH-HHCTTTSSTTSGGGBSHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHH--HhCccCcCccceeEEEeecccccccchhhHh-hccccccCCCCccccCHHHHHHHHH
Confidence            689999999999999999987  44432 22   13333433322222222221 1111111111134567777777777


Q ss_pred             HHhcCCcE
Q 045087          143 EYLMTKRY  150 (157)
Q Consensus       143 ~~L~~kr~  150 (157)
                      ...+++.+
T Consensus        78 ~L~~g~~i   85 (194)
T PF00485_consen   78 ALKNGGSI   85 (194)
T ss_dssp             HHHTTSCE
T ss_pred             HHhCCCcc
Confidence            76666654

7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....

>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family

Probab=97.79  E-value=0.00014  Score=54.98  Aligned_cols=43  Identities=14%  Similarity=0.067  Sum_probs=30.7

Q ss_pred             CCCCceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCC
Q 045087           61 GPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPY  105 (157)
Q Consensus        61 ~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~  105 (157)
                      +-....++.|+|.+|+|||++|.++... ..+ .=..++|++...
T Consensus        32 Gip~gs~~lI~G~pGtGKT~l~~qf~~~-~a~-~Ge~vlyis~Ee   74 (259)
T TIGR03878        32 GIPAYSVINITGVSDTGKSLMVEQFAVT-QAS-RGNPVLFVTVES   74 (259)
T ss_pred             CeECCcEEEEEcCCCCCHHHHHHHHHHH-HHh-CCCcEEEEEecC
Confidence            3355679999999999999999876552 222 234677888764

This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.

>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes

Probab=97.77  E-value=0.00013  Score=51.48  Aligned_cols=21  Identities=24%  Similarity=0.251  Sum_probs=19.0

Q ss_pred             EEEEEeCCCCcHHHHHHHHhc
Q 045087           67 AVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        67 vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ++.++|++|+||||++..+..
T Consensus         2 ~~~~~G~~G~GKTt~~~~la~   22 (173)
T cd03115           2 VILLVGLQGVGKTTTAAKLAL   22 (173)
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            678899999999999988876

SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.

>PRK14952 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.77  E-value=0.00029  Score=59.02  Aligned_cols=46  Identities=24%  Similarity=0.111  Sum_probs=38.6

Q ss_pred             CCCccccHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087           41 SRDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        41 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ..+++|.+..++.|.+++..+. -...+.++|+.|+||||+|+.+..
T Consensus        12 f~eivGq~~i~~~L~~~i~~~r-~~ha~Lf~Gp~G~GKTt~A~~lAk   57 (584)
T PRK14952         12 FAEVVGQEHVTEPLSSALDAGR-INHAYLFSGPRGCGKTSSARILAR   57 (584)
T ss_pred             HHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHH
Confidence            4678999999999999997753 234567899999999999999877

>TIGR00064 ftsY signal recognition particle-docking protein FtsY

Probab=97.76  E-value=0.00036  Score=53.21  Aligned_cols=25  Identities=16%  Similarity=0.177  Sum_probs=21.5

Q ss_pred             CCceEEEEEeCCCCcHHHHHHHHhc
Q 045087           63 PQLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        63 ~~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ...+++.++|.+|+||||++..++.
T Consensus        70 ~~~~vi~l~G~~G~GKTTt~akLA~   94 (272)
T TIGR00064        70 NKPNVILFVGVNGVGKTTTIAKLAN   94 (272)
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHH
Confidence            3468999999999999999988876

There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.

>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]

Probab=97.75  E-value=0.00017  Score=54.46  Aligned_cols=42  Identities=19%  Similarity=0.118  Sum_probs=29.4

Q ss_pred             ccHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhcC
Q 045087           46 GLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSS   88 (157)
Q Consensus        46 Gr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~   88 (157)
                      ++...+..+......=. +..-+.++|.+|+|||.||.++.+.
T Consensus        87 ~~~~~l~~~~~~~~~~~-~~~nl~l~G~~G~GKThLa~Ai~~~  128 (254)
T COG1484          87 IDKKALEDLASLVEFFE-RGENLVLLGPPGVGKTHLAIAIGNE  128 (254)
T ss_pred             hhHHHHHHHHHHHHHhc-cCCcEEEECCCCCcHHHHHHHHHHH
Confidence            34555555544442211 4557889999999999999999994

>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []

Probab=97.74  E-value=0.00011  Score=57.20  Aligned_cols=99  Identities=18%  Similarity=0.082  Sum_probs=59.1

Q ss_pred             HHHHHHHh-cCCCCceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCCCCCHHHHHHHHHHHhCCCCCCcc-c
Q 045087           52 EELLDLLI-EGPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPYTCYADQILDIIIKFLMPSSRLSE-I  129 (157)
Q Consensus        52 ~~l~~~L~-~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~l~~i~~~l~~~~~~~~-~  129 (157)
                      ..|-..|- .+-+..+++-|+|..|+||||||..+..  ..++.-..++|+.....+++..     +..++.+.+.-- .
T Consensus        39 ~~LD~aLg~GG~p~G~ivEi~G~~ssGKttLaL~~ia--~~q~~g~~~a~ID~e~~ld~~~-----a~~lGvdl~rllv~  111 (322)
T PF00154_consen   39 PALDYALGIGGLPRGRIVEIYGPESSGKTTLALHAIA--EAQKQGGICAFIDAEHALDPEY-----AESLGVDLDRLLVV  111 (322)
T ss_dssp             HHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHH--HHHHTT-EEEEEESSS---HHH-----HHHTT--GGGEEEE
T ss_pred             cccchhhccCccccCceEEEeCCCCCchhhhHHHHHH--hhhcccceeEEecCcccchhhH-----HHhcCccccceEEe
Confidence            44544454 2335567999999999999999988877  5555556788999888776543     344443221000 1


Q ss_pred             ccccHHHHHHHHHHHhcC-CcEEEEeeCC
Q 045087          130 KDKNYEMKKIILHEYLMT-KRYLIVIDDV  157 (157)
Q Consensus       130 ~~~~~~~~~~~l~~~L~~-kr~LlVlDdV  157 (157)
                      ...+.++.++.+...++. ..-++|+|.|
T Consensus       112 ~P~~~E~al~~~e~lirsg~~~lVVvDSv  140 (322)
T PF00154_consen  112 QPDTGEQALWIAEQLIRSGAVDLVVVDSV  140 (322)
T ss_dssp             E-SSHHHHHHHHHHHHHTTSESEEEEE-C
T ss_pred             cCCcHHHHHHHHHHHhhcccccEEEEecC
Confidence            223456667777776654 4468999975

In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....

>TIGR03499 FlhF flagellar biosynthetic protein FlhF

Probab=97.74  E-value=0.00022  Score=54.59  Aligned_cols=87  Identities=20%  Similarity=0.143  Sum_probs=46.5

Q ss_pred             CceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCCCC-CHHHHHHHHHHHhCCCCCCcccccccHHHHHHHHH
Q 045087           64 QLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPYTC-YADQILDIIIKFLMPSSRLSEIKDKNYEMKKIILH  142 (157)
Q Consensus        64 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~-~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~l~  142 (157)
                      +..+++++|.+|+||||++..+......+..-..++.++..... ...+-+......++.+..    ...+..++...+.
T Consensus       193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r~~a~eql~~~~~~~~~p~~----~~~~~~~l~~~l~  268 (282)
T TIGR03499       193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYRIGAVEQLKTYAKILGVPVK----VARDPKELRKALD  268 (282)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccchhHHHHHHHHHHHhCCcee----ccCCHHHHHHHHH
Confidence            45699999999999999998887732222111234455543321 223333333443333221    2234455555555


Q ss_pred             HHhcCCcEEEEeeC
Q 045087          143 EYLMTKRYLIVIDD  156 (157)
Q Consensus       143 ~~L~~kr~LlVlDd  156 (157)
                      . +.+ .=+|++|.
T Consensus       269 ~-~~~-~d~vliDt  280 (282)
T TIGR03499       269 R-LRD-KDLILIDT  280 (282)
T ss_pred             H-ccC-CCEEEEeC
Confidence            4 343 34777775

>PRK06921 hypothetical protein; Provisional

Probab=97.74  E-value=0.0002  Score=54.38  Aligned_cols=37  Identities=14%  Similarity=0.029  Sum_probs=28.1

Q ss_pred             ceEEEEEeCCCCcHHHHHHHHhcCcccccc-cCeeEEEEc
Q 045087           65 LSAVTILDSIGLDKTAFAAEAYSSNYMKHY-FDCHAWVQE  103 (157)
Q Consensus        65 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-F~~~~wv~~  103 (157)
                      ...+.++|.+|+|||+||.++++  .+... -..++|++.
T Consensus       117 ~~~l~l~G~~G~GKThLa~aia~--~l~~~~g~~v~y~~~  154 (266)
T PRK06921        117 KNSIALLGQPGSGKTHLLTAAAN--ELMRKKGVPVLYFPF  154 (266)
T ss_pred             CCeEEEECCCCCcHHHHHHHHHH--HHhhhcCceEEEEEH
Confidence            46789999999999999999998  44443 334566664

>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed

Probab=97.74  E-value=0.00037  Score=51.64  Aligned_cols=25  Identities=20%  Similarity=0.153  Sum_probs=22.8

Q ss_pred             CCceEEEEEeCCCCcHHHHHHHHhc
Q 045087           63 PQLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        63 ~~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      .+..+++|.|.+|.|||||++.+..
T Consensus        31 ~~~~iigi~G~~GsGKTTl~~~L~~   55 (229)
T PRK09270         31 QRRTIVGIAGPPGAGKSTLAEFLEA   55 (229)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHH
Confidence            4678999999999999999998877

>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family

Probab=97.74  E-value=0.00058  Score=50.41  Aligned_cols=101  Identities=20%  Similarity=0.103  Sum_probs=57.2

Q ss_pred             HHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCCCCCHHHHHHHHHHHhCCCC-------
Q 045087           52 EELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPYTCYADQILDIIIKFLMPSS-------  124 (157)
Q Consensus        52 ~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~l~~i~~~l~~~~-------  124 (157)
                      ..|-++|..+-.....+.|.|.+|.|||++|..+... ..+ .-...+|++...+  ..++... +.+++...       
T Consensus         7 ~~LD~~l~GGi~~G~~~~i~G~~G~GKT~l~~~~~~~-~~~-~g~~~~~is~e~~--~~~i~~~-~~~~g~~~~~~~~~~   81 (229)
T TIGR03881         7 EGLDKLLEGGIPRGFFVAVTGEPGTGKTIFCLHFAYK-GLR-DGDPVIYVTTEES--RESIIRQ-AAQFGMDFEKAIEEG   81 (229)
T ss_pred             hhHHHhhcCCCcCCeEEEEECCCCCChHHHHHHHHHH-HHh-cCCeEEEEEccCC--HHHHHHH-HHHhCCCHHHHhhcC
Confidence            3454555444456679999999999999999876542 122 2346778876443  3444333 22222110       


Q ss_pred             CC-------------cccccccHHHHHHHHHHHhcC---CcEEEEeeCC
Q 045087          125 RL-------------SEIKDKNYEMKKIILHEYLMT---KRYLIVIDDV  157 (157)
Q Consensus       125 ~~-------------~~~~~~~~~~~~~~l~~~L~~---kr~LlVlDdV  157 (157)
                      ..             ......+.+++...+++.++.   +.-++|+|.+
T Consensus        82 ~l~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~vvIDsl  130 (229)
T TIGR03881        82 KLVIIDALMKEKEDEWSLRELSIEELLNKVIEAKKYLGYGHARLVIDSM  130 (229)
T ss_pred             CEEEEEccccccccccccccCCHHHHHHHHHHHHHhhccCceEEEecCc
Confidence            00             001123566777777776643   3457888864

Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.

>PRK14954 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.73  E-value=0.00027  Score=59.65  Aligned_cols=47  Identities=15%  Similarity=-0.008  Sum_probs=38.2

Q ss_pred             CCCCccccHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087           40 KSRDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        40 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ...+++|.+.-++.|.+.+..+. -...+.++|+.|+||||+|+.+.+
T Consensus        14 ~f~eivGQe~i~~~L~~~i~~~r-i~ha~Lf~Gp~GvGKttlA~~lAk   60 (620)
T PRK14954         14 KFADITAQEHITHTIQNSLRMDR-VGHGYIFSGLRGVGKTTAARVFAK   60 (620)
T ss_pred             CHHHhcCcHHHHHHHHHHHHcCC-CCeeEEEECCCCCCHHHHHHHHHH
Confidence            34678999999999999887653 234578999999999999988866

>PRK11823 DNA repair protein RadA; Provisional

Probab=97.72  E-value=0.00041  Score=56.46  Aligned_cols=99  Identities=24%  Similarity=0.149  Sum_probs=57.8

Q ss_pred             HHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCCCCCHHHHHHHHHHHhCCCCC-Cccc
Q 045087           51 MEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPYTCYADQILDIIIKFLMPSSR-LSEI  129 (157)
Q Consensus        51 ~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~l~~i~~~l~~~~~-~~~~  129 (157)
                      +..|-+.|..+-....++.|.|.+|+|||||+.++...  ....-...+|++...  +..++... +..++...+ ..-.
T Consensus        66 i~~LD~~LgGGi~~Gs~~lI~G~pG~GKTtL~lq~a~~--~a~~g~~vlYvs~Ee--s~~qi~~r-a~rlg~~~~~l~~~  140 (446)
T PRK11823         66 IGELDRVLGGGLVPGSVVLIGGDPGIGKSTLLLQVAAR--LAAAGGKVLYVSGEE--SASQIKLR-AERLGLPSDNLYLL  140 (446)
T ss_pred             cHHHHHHhcCCccCCEEEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEEccc--cHHHHHHH-HHHcCCChhcEEEe
Confidence            45666666555455679999999999999999888773  322223567777654  33444332 344443211 0001


Q ss_pred             ccccHHHHHHHHHHHhcCCcEEEEeeCC
Q 045087          130 KDKNYEMKKIILHEYLMTKRYLIVIDDV  157 (157)
Q Consensus       130 ~~~~~~~~~~~l~~~L~~kr~LlVlDdV  157 (157)
                      ...+.+++.+.+.+   .+.-++|+|.+
T Consensus       141 ~e~~l~~i~~~i~~---~~~~lVVIDSI  165 (446)
T PRK11823        141 AETNLEAILATIEE---EKPDLVVIDSI  165 (446)
T ss_pred             CCCCHHHHHHHHHh---hCCCEEEEech
Confidence            22344555555433   35568999974

>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=97.72  E-value=0.0003  Score=59.57  Aligned_cols=72  Identities=17%  Similarity=0.164  Sum_probs=45.7

Q ss_pred             CceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCCCC--CHHHHHHHHHHHhCCCCCCcccccccHHHHHHHH
Q 045087           64 QLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPYTC--YADQILDIIIKFLMPSSRLSEIKDKNYEMKKIIL  141 (157)
Q Consensus        64 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~--~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~l  141 (157)
                      ..+.|.|.|..|+|||+||+++++... +++.....+++++...  +.+.+                     ...+...+
T Consensus       430 ~~~~Ill~G~~GsGKT~L~kal~~~~~-k~~~~hv~~v~Cs~l~~~~~e~i---------------------Qk~l~~vf  487 (952)
T KOG0735|consen  430 RHGNILLNGPKGSGKTNLVKALFDYYS-KDLIAHVEIVSCSTLDGSSLEKI---------------------QKFLNNVF  487 (952)
T ss_pred             ccccEEEeCCCCCCHhHHHHHHHHHhc-cccceEEEEEechhccchhHHHH---------------------HHHHHHHH
Confidence            456789999999999999999998432 3333344455554421  11111                     12333445


Q ss_pred             HHHhcCCcEEEEeeCC
Q 045087          142 HEYLMTKRYLIVIDDV  157 (157)
Q Consensus       142 ~~~L~~kr~LlVlDdV  157 (157)
                      ...+...+-++||||+
T Consensus       488 se~~~~~PSiIvLDdl  503 (952)
T KOG0735|consen  488 SEALWYAPSIIVLDDL  503 (952)
T ss_pred             HHHHhhCCcEEEEcch
Confidence            5556678888999886

>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]

Probab=97.71  E-value=4.3e-05  Score=64.35  Aligned_cols=52  Identities=19%  Similarity=0.305  Sum_probs=42.9

Q ss_pred             CCccccHHHHHHHHHHHhc----CCCCceEEEEEeCCCCcHHHHHHHHhcCccccccc
Q 045087           42 RDTVGLDDRMEELLDLLIE----GPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYF   95 (157)
Q Consensus        42 ~~~vGr~~~~~~l~~~L~~----~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F   95 (157)
                      .+=+|.++-.+++.+.|.-    +.-+.+++++||++|+|||+|++.+++  .....|
T Consensus       323 ~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~--al~Rkf  378 (782)
T COG0466         323 KDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAK--ALGRKF  378 (782)
T ss_pred             ccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHH--HhCCCE
Confidence            4568999999999998853    344568999999999999999999998  665555

>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]

Probab=97.71  E-value=0.00026  Score=53.47  Aligned_cols=90  Identities=9%  Similarity=-0.005  Sum_probs=51.0

Q ss_pred             CceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCC-----CCCHHHHHHHHHHHhCCCCCCcc---cccccHH
Q 045087           64 QLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPY-----TCYADQILDIIIKFLMPSSRLSE---IKDKNYE  135 (157)
Q Consensus        64 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~-----~~~~~~~l~~i~~~l~~~~~~~~---~~~~~~~  135 (157)
                      +..+++++|.+|+|||||++.+..  -. +.-.+.+++.-.+     .....+....++..++.....-.   ..-..-+
T Consensus        38 ~ge~~glVGESG~GKSTlgr~i~~--L~-~pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQ  114 (268)
T COG4608          38 EGETLGLVGESGCGKSTLGRLILG--LE-EPTSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQ  114 (268)
T ss_pred             CCCEEEEEecCCCCHHHHHHHHHc--Cc-CCCCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchh
Confidence            456999999999999999999988  22 2223344433111     12233455666666654321100   1112222


Q ss_pred             HHHHHHHHHhcCCcEEEEeeC
Q 045087          136 MKKIILHEYLMTKRYLIVIDD  156 (157)
Q Consensus       136 ~~~~~l~~~L~~kr~LlVlDd  156 (157)
                      .-.-.+.+.|.-+.-|+|+|+
T Consensus       115 rQRi~IARALal~P~liV~DE  135 (268)
T COG4608         115 RQRIGIARALALNPKLIVADE  135 (268)
T ss_pred             hhhHHHHHHHhhCCcEEEecC
Confidence            223345666777778888875

>PRK10787 DNA-binding ATP-dependent protease La; Provisional

Probab=97.71  E-value=0.00023  Score=61.60  Aligned_cols=46  Identities=17%  Similarity=0.286  Sum_probs=38.7

Q ss_pred             CCccccHHHHHHHHHHHhc----CCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087           42 RDTVGLDDRMEELLDLLIE----GPPQLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        42 ~~~vGr~~~~~~l~~~L~~----~~~~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      .+.+|.+.-.+++.++|..    +.....++.++|++|+||||+|+.+..
T Consensus       322 ~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~  371 (784)
T PRK10787        322 TDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAK  371 (784)
T ss_pred             hhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999988863    223456899999999999999999987

>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]

Probab=97.71  E-value=0.00016  Score=53.77  Aligned_cols=68  Identities=19%  Similarity=0.134  Sum_probs=46.3

Q ss_pred             CCCCccccHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhcCccccc-cc-CeeEEEEcCCCCCHHH
Q 045087           40 KSRDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKH-YF-DCHAWVQEPYTCYADQ  111 (157)
Q Consensus        40 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~F-~~~~wv~~~~~~~~~~  111 (157)
                      .-.++||.++-++.|.-....+  +.+.+.|.||+|+||||-+..+.+  ++-. .+ +...-.+.++....+-
T Consensus        25 ~l~dIVGNe~tv~rl~via~~g--nmP~liisGpPG~GKTTsi~~LAr--~LLG~~~ke~vLELNASdeRGIDv   94 (333)
T KOG0991|consen   25 VLQDIVGNEDTVERLSVIAKEG--NMPNLIISGPPGTGKTTSILCLAR--ELLGDSYKEAVLELNASDERGIDV   94 (333)
T ss_pred             HHHHhhCCHHHHHHHHHHHHcC--CCCceEeeCCCCCchhhHHHHHHH--HHhChhhhhHhhhccCccccccHH
Confidence            3467999999999987665554  578899999999999998877777  3322 12 3333444454444433

>TIGR02655 circ_KaiC circadian clock protein KaiC

Probab=97.71  E-value=0.00029  Score=57.94  Aligned_cols=103  Identities=14%  Similarity=-0.028  Sum_probs=63.5

Q ss_pred             HHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCCCCCHHHHHHHHHHHhCCCCCC---
Q 045087           50 RMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPYTCYADQILDIIIKFLMPSSRL---  126 (157)
Q Consensus        50 ~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~l~~i~~~l~~~~~~---  126 (157)
                      .+..|-++|..+-....++.|.|.+|+|||||+.++..  .....-..+++++...  +..++...+ ..++-+...   
T Consensus       248 Gi~~lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~--~~~~~ge~~~y~s~eE--s~~~i~~~~-~~lg~~~~~~~~  322 (484)
T TIGR02655       248 GVVRLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLE--NACANKERAILFAYEE--SRAQLLRNA-YSWGIDFEEMEQ  322 (484)
T ss_pred             ChHhHHHHhcCCccCCcEEEEECCCCCCHHHHHHHHHH--HHHHCCCeEEEEEeeC--CHHHHHHHH-HHcCCChHHHhh
Confidence            34667777766656778999999999999999988766  3323334567777655  455655554 444421100   


Q ss_pred             -c-------ccccccHHHHHHHHHHHhcC-CcEEEEeeCC
Q 045087          127 -S-------EIKDKNYEMKKIILHEYLMT-KRYLIVIDDV  157 (157)
Q Consensus       127 -~-------~~~~~~~~~~~~~l~~~L~~-kr~LlVlDdV  157 (157)
                       .       .......++.+..+.+.+.. +.-++|+|.+
T Consensus       323 ~g~l~~~~~~p~~~~~~~~~~~i~~~i~~~~~~~vvIDsi  362 (484)
T TIGR02655       323 QGLLKIICAYPESAGLEDHLQIIKSEIADFKPARIAIDSL  362 (484)
T ss_pred             CCcEEEEEcccccCChHHHHHHHHHHHHHcCCCEEEEcCH
Confidence             0       00122346677777777654 4457888864

Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.

>PRK08903 DnaA regulatory inactivator Hda; Validated

Probab=97.70  E-value=9.9e-05  Score=54.46  Aligned_cols=45  Identities=13%  Similarity=0.158  Sum_probs=30.9

Q ss_pred             CCcc-cc-HHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087           42 RDTV-GL-DDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        42 ~~~v-Gr-~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ++|+ |. +..+..+.++... ......+.|+|.+|+|||+||..+++
T Consensus        18 d~f~~~~~~~~~~~l~~~~~~-~~~~~~~~l~G~~G~GKT~La~ai~~   64 (227)
T PRK08903         18 DNFVAGENAELVARLRELAAG-PVADRFFYLWGEAGSGRSHLLQALVA   64 (227)
T ss_pred             cccccCCcHHHHHHHHHHHhc-cCCCCeEEEECCCCCCHHHHHHHHHH
Confidence            4444 44 3444555555442 23356788999999999999999988

>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily

Probab=97.70  E-value=0.00018  Score=61.96  Aligned_cols=47  Identities=23%  Similarity=0.233  Sum_probs=36.0

Q ss_pred             CCCccccHHHHHHHHHHHhc-----------CCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087           41 SRDTVGLDDRMEELLDLLIE-----------GPPQLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        41 ~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ..++.|.+...++|.+.+..           +-...+-+.++|++|+|||+||+++.+
T Consensus       452 ~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~  509 (733)
T TIGR01243       452 WSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVAT  509 (733)
T ss_pred             hhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHH
Confidence            45678888888888777642           112234578899999999999999998

This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.

>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit

Probab=97.70  E-value=0.00019  Score=57.71  Aligned_cols=52  Identities=15%  Similarity=0.196  Sum_probs=38.6

Q ss_pred             CCccccHHHHHHHHHHHhcC------------CCCceEEEEEeCCCCcHHHHHHHHhcCccccccc
Q 045087           42 RDTVGLDDRMEELLDLLIEG------------PPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYF   95 (157)
Q Consensus        42 ~~~vGr~~~~~~l~~~L~~~------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F   95 (157)
                      ..++|.++.+..+...+...            +...+.+.++|++|+|||++|+.+..  .+...|
T Consensus        12 ~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~--~l~~~f   75 (441)
T TIGR00390        12 KYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAK--LANAPF   75 (441)
T ss_pred             hhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHH--HhCCeE
Confidence            56888888888886665531            12246788999999999999999988  444444

This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.

>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional

Probab=97.70  E-value=0.00011  Score=58.10  Aligned_cols=30  Identities=13%  Similarity=-0.006  Sum_probs=25.0

Q ss_pred             CCceEEEEEeCCCCcHHHHHHHHhcCcccccc
Q 045087           63 PQLSAVTILDSIGLDKTAFAAEAYSSNYMKHY   94 (157)
Q Consensus        63 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~   94 (157)
                      .....++|||++|+|||.+|++++.  +..-.
T Consensus       146 k~PlgllL~GPPGcGKTllAraiA~--elg~~  175 (413)
T PLN00020        146 KVPLILGIWGGKGQGKSFQCELVFK--KMGIE  175 (413)
T ss_pred             CCCeEEEeeCCCCCCHHHHHHHHHH--HcCCC
Confidence            3467899999999999999999999  44443

>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=97.69  E-value=3.7e-05  Score=53.81  Aligned_cols=23  Identities=17%  Similarity=0.176  Sum_probs=20.8

Q ss_pred             ceEEEEEeCCCCcHHHHHHHHhc
Q 045087           65 LSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        65 ~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ..-+.|+|++|+||||++..+.+
T Consensus         5 ~mki~ITG~PGvGKtTl~~ki~e   27 (179)
T COG1618           5 AMKIFITGRPGVGKTTLVLKIAE   27 (179)
T ss_pred             ceEEEEeCCCCccHHHHHHHHHH
Confidence            45689999999999999999987

>PRK15455 PrkA family serine protein kinase; Provisional

Probab=97.69  E-value=5.7e-05  Score=62.76  Aligned_cols=46  Identities=15%  Similarity=0.300  Sum_probs=39.2

Q ss_pred             CCccccHHHHHHHHHHHh----cCCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087           42 RDTVGLDDRMEELLDLLI----EGPPQLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        42 ~~~vGr~~~~~~l~~~L~----~~~~~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      .+++|.++.++++.+.|.    .-+.+.+++.++|++|+|||+||+.+.+
T Consensus        76 ~d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~  125 (644)
T PRK15455         76 EEFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKS  125 (644)
T ss_pred             hcccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHH
Confidence            368999999999999882    2234568999999999999999999987

>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional

Probab=97.68  E-value=0.00016  Score=58.17  Aligned_cols=47  Identities=17%  Similarity=0.208  Sum_probs=37.2

Q ss_pred             CCCccccHHHHHHHHHHHhcC------------CCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087           41 SRDTVGLDDRMEELLDLLIEG------------PPQLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        41 ~~~~vGr~~~~~~l~~~L~~~------------~~~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ...++|.+..++.+..++...            +.....+.++|++|+|||+||+.+..
T Consensus        14 d~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk   72 (443)
T PRK05201         14 DKYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAK   72 (443)
T ss_pred             ccccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHH
Confidence            356899999999988777541            11236789999999999999999987

>PRK04040 adenylate kinase; Provisional

Probab=97.68  E-value=0.00014  Score=52.40  Aligned_cols=22  Identities=23%  Similarity=0.291  Sum_probs=20.5

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhc
Q 045087           66 SAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        66 ~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      .+|.|+|++|+||||+++.+.+
T Consensus         3 ~~i~v~G~pG~GKtt~~~~l~~   24 (188)
T PRK04040          3 KVVVVTGVPGVGKTTVLNKALE   24 (188)
T ss_pred             eEEEEEeCCCCCHHHHHHHHHH
Confidence            5799999999999999999988

>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]

Probab=97.68  E-value=9.7e-05  Score=54.23  Aligned_cols=28  Identities=21%  Similarity=0.191  Sum_probs=23.9

Q ss_pred             CceEEEEEeCCCCcHHHHHHHHhcCccccc
Q 045087           64 QLSAVTILDSIGLDKTAFAAEAYSSNYMKH   93 (157)
Q Consensus        64 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~   93 (157)
                      +..+|+|.|.+|.||||+|+.++.  .++.
T Consensus         7 ~~iiIgIaG~SgSGKTTva~~l~~--~~~~   34 (218)
T COG0572           7 KVIIIGIAGGSGSGKTTVAKELSE--QLGV   34 (218)
T ss_pred             ceEEEEEeCCCCCCHHHHHHHHHH--HhCc
Confidence            457999999999999999999988  4443

>PF14516 AAA_35: AAA-like domain

Probab=97.68  E-value=0.0012  Score=51.68  Aligned_cols=114  Identities=14%  Similarity=0.092  Sum_probs=68.7

Q ss_pred             CCCCCccccHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCC-----CCCHHHHH
Q 045087           39 SKSRDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPY-----TCYADQIL  113 (157)
Q Consensus        39 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~-----~~~~~~~l  113 (157)
                      .+.+..|.|...-+++.+.|...   ...+.|.|+..+|||+|...+.+  ..++.=...+++++..     ..+.++++
T Consensus         8 ~~~~~Yi~R~~~e~~~~~~i~~~---G~~~~I~apRq~GKTSll~~l~~--~l~~~~~~~v~id~~~~~~~~~~~~~~f~   82 (331)
T PF14516_consen    8 LDSPFYIERPPAEQECYQEIVQP---GSYIRIKAPRQMGKTSLLLRLLE--RLQQQGYRCVYIDLQQLGSAIFSDLEQFL   82 (331)
T ss_pred             CCCCcccCchHHHHHHHHHHhcC---CCEEEEECcccCCHHHHHHHHHH--HHHHCCCEEEEEEeecCCCcccCCHHHHH
Confidence            34455678885566666666542   24899999999999999999988  4433222455676543     13566666


Q ss_pred             HHHHHHhCCCCCC----cc-c--ccccHHHHHHHHHHHh---cCCcEEEEeeCC
Q 045087          114 DIIIKFLMPSSRL----SE-I--KDKNYEMKKIILHEYL---MTKRYLIVIDDV  157 (157)
Q Consensus       114 ~~i~~~l~~~~~~----~~-~--~~~~~~~~~~~l~~~L---~~kr~LlVlDdV  157 (157)
                      +.++..+...-..    .. +  ...+.......+.+++   .+++.+|+||+|
T Consensus        83 ~~~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEi  136 (331)
T PF14516_consen   83 RWFCEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEI  136 (331)
T ss_pred             HHHHHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEech
Confidence            6666555432211    10 0  1123334445555543   268899999986

>TIGR00416 sms DNA repair protein RadA

Probab=97.68  E-value=0.00042  Score=56.49  Aligned_cols=102  Identities=19%  Similarity=0.086  Sum_probs=58.1

Q ss_pred             HHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCCCCCHHHHHHHHHHHhCCCCC-C
Q 045087           48 DDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPYTCYADQILDIIIKFLMPSSR-L  126 (157)
Q Consensus        48 ~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~l~~i~~~l~~~~~-~  126 (157)
                      ..-+..|-++|..+-....++.|.|.+|+|||||+..+...  ....-...+|++...  +..++... +..++.... .
T Consensus        77 ~TGi~~LD~vLgGGi~~GsvilI~G~pGsGKTTL~lq~a~~--~a~~g~kvlYvs~EE--s~~qi~~r-a~rlg~~~~~l  151 (454)
T TIGR00416        77 SSGFGELDRVLGGGIVPGSLILIGGDPGIGKSTLLLQVACQ--LAKNQMKVLYVSGEE--SLQQIKMR-AIRLGLPEPNL  151 (454)
T ss_pred             ccCcHHHHHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHH--HHhcCCcEEEEECcC--CHHHHHHH-HHHcCCChHHe
Confidence            33456666666555556789999999999999999888662  222223467777554  33443322 233332111 0


Q ss_pred             cccccccHHHHHHHHHHHhcCCcEEEEeeCC
Q 045087          127 SEIKDKNYEMKKIILHEYLMTKRYLIVIDDV  157 (157)
Q Consensus       127 ~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdV  157 (157)
                      .-....+.+++...+.+   .+.-++|+|.+
T Consensus       152 ~~~~e~~~~~I~~~i~~---~~~~~vVIDSI  179 (454)
T TIGR00416       152 YVLSETNWEQICANIEE---ENPQACVIDSI  179 (454)
T ss_pred             EEcCCCCHHHHHHHHHh---cCCcEEEEecc
Confidence            00223344555555433   35568999964

The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).

>PTZ00301 uridine kinase; Provisional

Probab=97.67  E-value=0.00011  Score=53.97  Aligned_cols=23  Identities=17%  Similarity=0.273  Sum_probs=20.8

Q ss_pred             ceEEEEEeCCCCcHHHHHHHHhc
Q 045087           65 LSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        65 ~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ..+|+|.|.+|.||||||+.+.+
T Consensus         3 ~~iIgIaG~SgSGKTTla~~l~~   25 (210)
T PTZ00301          3 CTVIGISGASGSGKSSLSTNIVS   25 (210)
T ss_pred             CEEEEEECCCcCCHHHHHHHHHH
Confidence            57899999999999999988866

>PRK14086 dnaA chromosomal replication initiation protein; Provisional

Probab=97.67  E-value=0.00029  Score=59.10  Aligned_cols=27  Identities=22%  Similarity=0.301  Sum_probs=22.7

Q ss_pred             ceEEEEEeCCCCcHHHHHHHHhcCccccc
Q 045087           65 LSAVTILDSIGLDKTAFAAEAYSSNYMKH   93 (157)
Q Consensus        65 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~   93 (157)
                      ...+.|+|..|+|||.|++++++  ....
T Consensus       314 ~NpL~LyG~sGsGKTHLL~AIa~--~a~~  340 (617)
T PRK14086        314 YNPLFIYGESGLGKTHLLHAIGH--YARR  340 (617)
T ss_pred             CCcEEEECCCCCCHHHHHHHHHH--HHHH
Confidence            34589999999999999999999  4443

>PRK10867 signal recognition particle protein; Provisional

Probab=97.67  E-value=0.0005  Score=55.67  Aligned_cols=24  Identities=17%  Similarity=0.174  Sum_probs=20.3

Q ss_pred             CceEEEEEeCCCCcHHHHHHHHhc
Q 045087           64 QLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        64 ~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ...++.++|.+|+||||++..++.
T Consensus        99 ~p~vI~~vG~~GsGKTTtaakLA~  122 (433)
T PRK10867         99 PPTVIMMVGLQGAGKTTTAGKLAK  122 (433)
T ss_pred             CCEEEEEECCCCCcHHHHHHHHHH
Confidence            367999999999999998776655

>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway

Probab=97.65  E-value=0.00032  Score=51.81  Aligned_cols=21  Identities=19%  Similarity=0.208  Sum_probs=19.4

Q ss_pred             EEEEEeCCCCcHHHHHHHHhc
Q 045087           67 AVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        67 vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      +++|.|.+|+||||+|+.+..
T Consensus         1 IigI~G~sGSGKTTla~~L~~   21 (220)
T cd02025           1 IIGIAGSVAVGKSTTARVLQA   21 (220)
T ss_pred             CEEeeCCCCCCHHHHHHHHHH
Confidence            479999999999999999887

The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.

>PRK00771 signal recognition particle protein Srp54; Provisional

Probab=97.65  E-value=0.00068  Score=55.01  Aligned_cols=57  Identities=18%  Similarity=0.031  Sum_probs=34.3

Q ss_pred             CceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCC-CCCHHHHHHHHHHHhCC
Q 045087           64 QLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPY-TCYADQILDIIIKFLMP  122 (157)
Q Consensus        64 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~-~~~~~~~l~~i~~~l~~  122 (157)
                      ...++.++|.+|+||||+|..++.  .+...-...+.+++.. .....+-+..++.+++.
T Consensus        94 ~p~vI~lvG~~GsGKTTtaakLA~--~L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gv  151 (437)
T PRK00771         94 KPQTIMLVGLQGSGKTTTAAKLAR--YFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGV  151 (437)
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHH--HHHHcCCeEEEecCCCCCHHHHHHHHHHHHHcCC
Confidence            467899999999999999998887  3433211223333322 11234445555655543

>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]

Probab=97.65  E-value=0.00019  Score=54.18  Aligned_cols=58  Identities=22%  Similarity=0.179  Sum_probs=42.8

Q ss_pred             HHHhcCCCCceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCCCCCHHHHHHHHH
Q 045087           56 DLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPYTCYADQILDIII  117 (157)
Q Consensus        56 ~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~l~~i~  117 (157)
                      +.|..+-+..+++.|+|.+|+|||+++.++..  +...+...++|++...+  ..+++..+.
T Consensus        14 ~~l~GG~p~g~~~lI~G~pGsGKT~f~~qfl~--~~~~~ge~vlyvs~~e~--~~~l~~~~~   71 (260)
T COG0467          14 EILGGGLPRGSVVLITGPPGTGKTIFALQFLY--EGAREGEPVLYVSTEES--PEELLENAR   71 (260)
T ss_pred             HHhcCCCcCCcEEEEEcCCCCcHHHHHHHHHH--HHHhcCCcEEEEEecCC--HHHHHHHHH
Confidence            33434446678999999999999999988877  55556888999998774  445555543

>PRK05642 DNA replication initiation factor; Validated

Probab=97.64  E-value=0.00037  Score=51.94  Aligned_cols=38  Identities=8%  Similarity=0.068  Sum_probs=27.6

Q ss_pred             ceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcC
Q 045087           65 LSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEP  104 (157)
Q Consensus        65 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~  104 (157)
                      ...+.|+|.+|+|||.|++++++  .....-..++|++..
T Consensus        45 ~~~l~l~G~~G~GKTHLl~a~~~--~~~~~~~~v~y~~~~   82 (234)
T PRK05642         45 ESLIYLWGKDGVGRSHLLQAACL--RFEQRGEPAVYLPLA   82 (234)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHH--HHHhCCCcEEEeeHH
Confidence            35789999999999999999987  333322345666653

>TIGR00959 ffh signal recognition particle protein

Probab=97.63  E-value=0.00056  Score=55.34  Aligned_cols=23  Identities=13%  Similarity=0.105  Sum_probs=20.2

Q ss_pred             ceEEEEEeCCCCcHHHHHHHHhc
Q 045087           65 LSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        65 ~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ..++.++|.+|+||||+|..++.
T Consensus        99 p~vi~~vG~~GsGKTTtaakLA~  121 (428)
T TIGR00959        99 PTVILMVGLQGSGKTTTCGKLAY  121 (428)
T ss_pred             CEEEEEECCCCCcHHHHHHHHHH
Confidence            57899999999999999877766

This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.

>CHL00095 clpC Clp protease ATP binding subunit

Probab=97.62  E-value=0.00015  Score=63.13  Aligned_cols=46  Identities=13%  Similarity=0.237  Sum_probs=36.2

Q ss_pred             CCccccHHHHHHHHHHHhcC-------CCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087           42 RDTVGLDDRMEELLDLLIEG-------PPQLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        42 ~~~vGr~~~~~~l~~~L~~~-------~~~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ..++|.+..++.|.+.+...       ......+.++|++|+|||+||+.+.+
T Consensus       509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~  561 (821)
T CHL00095        509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALAS  561 (821)
T ss_pred             CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHH
Confidence            67899999999998877521       11234567899999999999999877

>TIGR02903 spore_lon_C ATP-dependent protease, Lon family

Probab=97.62  E-value=9.9e-05  Score=62.29  Aligned_cols=48  Identities=19%  Similarity=0.198  Sum_probs=39.2

Q ss_pred             CCCCccccHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhcCc
Q 045087           40 KSRDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSSN   89 (157)
Q Consensus        40 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~   89 (157)
                      ..+.++|++..+..+.+.+....  ...+.|+|.+|+||||||+.+++..
T Consensus       152 ~~~~iiGqs~~~~~l~~~ia~~~--~~~vlL~Gp~GtGKTTLAr~i~~~~  199 (615)
T TIGR02903       152 AFSEIVGQERAIKALLAKVASPF--PQHIILYGPPGVGKTTAARLALEEA  199 (615)
T ss_pred             cHHhceeCcHHHHHHHHHHhcCC--CCeEEEECCCCCCHHHHHHHHHHhh
Confidence            34578999999999888775433  4579999999999999999998743

Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.

>PRK14953 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.61  E-value=0.00083  Score=55.27  Aligned_cols=46  Identities=15%  Similarity=0.061  Sum_probs=38.2

Q ss_pred             CCCccccHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087           41 SRDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        41 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ..+++|.+.-++.|.+++..+. -...+.++|..|+||||+|+.+..
T Consensus        15 f~diiGq~~i~~~L~~~i~~~~-i~hayLf~Gp~G~GKTtlAr~lAk   60 (486)
T PRK14953         15 FKEVIGQEIVVRILKNAVKLQR-VSHAYIFAGPRGTGKTTIARILAK   60 (486)
T ss_pred             HHHccChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHH
Confidence            4578999999999999997753 234567899999999999998866

>PRK06835 DNA replication protein DnaC; Validated

Probab=97.61  E-value=0.00027  Score=55.33  Aligned_cols=36  Identities=8%  Similarity=-0.009  Sum_probs=26.9

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEc
Q 045087           66 SAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQE  103 (157)
Q Consensus        66 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~  103 (157)
                      .-+.++|.+|+|||+||.++++  .+-..-..++|++.
T Consensus       184 ~~Lll~G~~GtGKThLa~aIa~--~l~~~g~~V~y~t~  219 (329)
T PRK06835        184 ENLLFYGNTGTGKTFLSNCIAK--ELLDRGKSVIYRTA  219 (329)
T ss_pred             CcEEEECCCCCcHHHHHHHHHH--HHHHCCCeEEEEEH
Confidence            6799999999999999999988  44333234555553

>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=97.60  E-value=0.00026  Score=59.97  Aligned_cols=55  Identities=15%  Similarity=0.088  Sum_probs=41.4

Q ss_pred             CCceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCCCCCHHHHHHHHHHHhCC
Q 045087           63 PQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPYTCYADQILDIIIKFLMP  122 (157)
Q Consensus        63 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~l~~i~~~l~~  122 (157)
                      +.-+++.++|++|+||||||..++++.    -| .++-++.++..+...+-..|...+..
T Consensus       324 P~kKilLL~GppGlGKTTLAHViAkqa----GY-sVvEINASDeRt~~~v~~kI~~avq~  378 (877)
T KOG1969|consen  324 PPKKILLLCGPPGLGKTTLAHVIAKQA----GY-SVVEINASDERTAPMVKEKIENAVQN  378 (877)
T ss_pred             CccceEEeecCCCCChhHHHHHHHHhc----Cc-eEEEecccccccHHHHHHHHHHHHhh
Confidence            356899999999999999999998832    22 35567778877777777777666654

>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C

Probab=97.59  E-value=5.4e-05  Score=50.36  Aligned_cols=20  Identities=30%  Similarity=0.234  Sum_probs=18.7

Q ss_pred             EEEEeCCCCcHHHHHHHHhc
Q 045087           68 VTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        68 i~I~G~gGiGKTtLa~~v~~   87 (157)
                      |.|.|.+|+||||+|+.+..
T Consensus         1 I~i~G~~GsGKtTia~~L~~   20 (129)
T PF13238_consen    1 IGISGIPGSGKTTIAKELAE   20 (129)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             CEEECCCCCCHHHHHHHHHH
Confidence            67999999999999999988

...

>PRK08972 fliI flagellum-specific ATP synthase; Validated

Probab=97.59  E-value=0.00034  Score=56.57  Aligned_cols=90  Identities=9%  Similarity=0.063  Sum_probs=53.3

Q ss_pred             CceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCCCCC-HHHHHHHHHHHhCCCCCC---cccccccHH----
Q 045087           64 QLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPYTCY-ADQILDIIIKFLMPSSRL---SEIKDKNYE----  135 (157)
Q Consensus        64 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~-~~~~l~~i~~~l~~~~~~---~~~~~~~~~----  135 (157)
                      +...++|+|..|+|||||+..+...  .  ..+..++..++.... ..+++..++..-......   ...+....+    
T Consensus       161 ~GqrigI~G~sG~GKSTLL~~I~~~--~--~~dv~Vi~lIGER~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~~a  236 (444)
T PRK08972        161 KGQRMGLFAGSGVGKSVLLGMMTRG--T--TADVIVVGLVGERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRLKG  236 (444)
T ss_pred             CCCEEEEECCCCCChhHHHHHhccC--C--CCCEEEEEEEcCChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHHHH
Confidence            3468999999999999999999872  2  224666666766543 456666654432111100   001111111    


Q ss_pred             -HHHHHHHHHh--cCCcEEEEeeCC
Q 045087          136 -MKKIILHEYL--MTKRYLIVIDDV  157 (157)
Q Consensus       136 -~~~~~l~~~L--~~kr~LlVlDdV  157 (157)
                       ...-.+.+++  +++.+||++||+
T Consensus       237 ~~~A~tiAEyfrd~G~~VLl~~Dsl  261 (444)
T PRK08972        237 CETATTIAEYFRDQGLNVLLLMDSL  261 (444)
T ss_pred             HHHHHHHHHHHHHcCCCEEEEEcCh
Confidence             1222344444  689999999985

>PRK04296 thymidine kinase; Provisional

Probab=97.59  E-value=0.00011  Score=52.98  Aligned_cols=22  Identities=9%  Similarity=-0.044  Sum_probs=19.0

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhc
Q 045087           66 SAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        66 ~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      .++.|+|..|.||||+|..+..
T Consensus         3 ~i~litG~~GsGKTT~~l~~~~   24 (190)
T PRK04296          3 KLEFIYGAMNSGKSTELLQRAY   24 (190)
T ss_pred             EEEEEECCCCCHHHHHHHHHHH
Confidence            4678899999999999987776

>PRK06002 fliI flagellum-specific ATP synthase; Validated

Probab=97.58  E-value=0.00054  Score=55.58  Aligned_cols=91  Identities=11%  Similarity=0.143  Sum_probs=48.6

Q ss_pred             CceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCCCCCHHHHHHHHHHHhCCCC--CCcccccccHH-----H
Q 045087           64 QLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPYTCYADQILDIIIKFLMPSS--RLSEIKDKNYE-----M  136 (157)
Q Consensus        64 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~l~~i~~~l~~~~--~~~~~~~~~~~-----~  136 (157)
                      ....++|+|.+|+|||||+..+....   ....+.+++.--+..+..++....+.......  -..+.+.....     .
T Consensus       164 ~Gqri~I~G~SGsGKTTLL~~Ia~l~---~pd~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qsd~~~~~r~~~~~  240 (450)
T PRK06002        164 AGQRIGIFAGSGVGKSTLLAMLARAD---AFDTVVIALVGERGREVREFLEDTLADNLKKAVAVVATSDESPMMRRLAPL  240 (450)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCC---CCCeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcCCCCHHHHHHHHH
Confidence            34589999999999999999887632   12223333332234455555554444331100  00001111111     1


Q ss_pred             HHHHHHHHh--cCCcEEEEeeCC
Q 045087          137 KKIILHEYL--MTKRYLIVIDDV  157 (157)
Q Consensus       137 ~~~~l~~~L--~~kr~LlVlDdV  157 (157)
                      ..-.+.+++  +++.+||++||+
T Consensus       241 ~a~~iAEyfrd~G~~Vll~~Dsl  263 (450)
T PRK06002        241 TATAIAEYFRDRGENVLLIVDSV  263 (450)
T ss_pred             HHHHHHHHHHHcCCCEEEeccch
Confidence            222344444  588999999985

>PRK04328 hypothetical protein; Provisional

Probab=97.58  E-value=0.00065  Score=51.07  Aligned_cols=52  Identities=15%  Similarity=0.173  Sum_probs=36.0

Q ss_pred             HHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCC
Q 045087           52 EELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPY  105 (157)
Q Consensus        52 ~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~  105 (157)
                      ..|-++|..+-+...++.|.|.+|.|||+||.++... .+ ..-..++|++...
T Consensus        10 ~~LD~lL~GGip~gs~ili~G~pGsGKT~l~~~fl~~-~~-~~ge~~lyis~ee   61 (249)
T PRK04328         10 PGMDEILYGGIPERNVVLLSGGPGTGKSIFSQQFLWN-GL-QMGEPGVYVALEE   61 (249)
T ss_pred             hhHHHHhcCCCcCCcEEEEEcCCCCCHHHHHHHHHHH-HH-hcCCcEEEEEeeC
Confidence            3455555555456779999999999999999776542 22 2245678888766

>PRK08927 fliI flagellum-specific ATP synthase; Validated

Probab=97.58  E-value=0.00042  Score=56.11  Aligned_cols=90  Identities=12%  Similarity=0.072  Sum_probs=52.3

Q ss_pred             CceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCCCC-CHHHHHHHHHHHhCCCCCC---cccccccHH----
Q 045087           64 QLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPYTC-YADQILDIIIKFLMPSSRL---SEIKDKNYE----  135 (157)
Q Consensus        64 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~-~~~~~l~~i~~~l~~~~~~---~~~~~~~~~----  135 (157)
                      +...++|+|..|+|||||++.+++..  .  .+..++..++... ...+++...+..-+.....   ...+.....    
T Consensus       157 ~Gqri~I~G~sG~GKTtLL~~I~~~~--~--~d~~v~~~iGER~rEv~ef~~~~l~~~~l~rsvvv~atsd~~~~~r~~a  232 (442)
T PRK08927        157 RGQRMGIFAGSGVGKSVLLSMLARNA--D--ADVSVIGLIGERGREVQEFLQDDLGPEGLARSVVVVATSDEPALMRRQA  232 (442)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhcc--C--CCEEEEEEEecCcHHHHHHHHHHhhccCceeEEEEEECCCCCHHHHHHH
Confidence            45688999999999999999998732  2  2345566666544 3456665554432211000   001111112    


Q ss_pred             -HHHHHHHHHh--cCCcEEEEeeCC
Q 045087          136 -MKKIILHEYL--MTKRYLIVIDDV  157 (157)
Q Consensus       136 -~~~~~l~~~L--~~kr~LlVlDdV  157 (157)
                       ...-.+.+++  +++.+||++||+
T Consensus       233 ~~~a~tiAEyfrd~G~~Vll~~Dsl  257 (442)
T PRK08927        233 AYLTLAIAEYFRDQGKDVLCLMDSV  257 (442)
T ss_pred             HHHHHHHHHHHHHCCCcEEEEEeCc
Confidence             2222344444  588999999986

>PRK13531 regulatory ATPase RavA; Provisional

Probab=97.58  E-value=0.0001  Score=60.14  Aligned_cols=42  Identities=17%  Similarity=0.158  Sum_probs=37.3

Q ss_pred             CCccccHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087           42 RDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        42 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ..++|+++.++.+...+..+.    .+.++|.+|+|||+||+.+..
T Consensus        20 ~~i~gre~vI~lll~aalag~----hVLL~GpPGTGKT~LAraLa~   61 (498)
T PRK13531         20 KGLYERSHAIRLCLLAALSGE----SVFLLGPPGIAKSLIARRLKF   61 (498)
T ss_pred             hhccCcHHHHHHHHHHHccCC----CEEEECCCChhHHHHHHHHHH
Confidence            578999999999988887754    688999999999999999987

>PRK10865 protein disaggregation chaperone; Provisional

Probab=97.57  E-value=0.00054  Score=59.98  Aligned_cols=46  Identities=13%  Similarity=0.289  Sum_probs=36.4

Q ss_pred             CCccccHHHHHHHHHHHhcC-------CCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087           42 RDTVGLDDRMEELLDLLIEG-------PPQLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        42 ~~~vGr~~~~~~l~~~L~~~-------~~~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ..++|.+..++.|.+.+...       ......+.++|++|+|||+||+.+++
T Consensus       568 ~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~  620 (857)
T PRK10865        568 HRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALAN  620 (857)
T ss_pred             CeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHH
Confidence            46889999999988887531       11224788999999999999999987

>TIGR00764 lon_rel lon-related putative ATP-dependent protease

Probab=97.56  E-value=0.00032  Score=59.13  Aligned_cols=75  Identities=9%  Similarity=0.023  Sum_probs=53.6

Q ss_pred             CCCccccHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhcCcccccc-cCeeEEEEcCCCCCHHHHHHHHHHH
Q 045087           41 SRDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHY-FDCHAWVQEPYTCYADQILDIIIKF  119 (157)
Q Consensus        41 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-F~~~~wv~~~~~~~~~~~l~~i~~~  119 (157)
                      .++++|.++.++.+...+....    .+.++|++|+||||+|+.+.+  .+... |...+++.-+ ..+..+++..++..
T Consensus        17 ~~~viG~~~a~~~l~~a~~~~~----~~ll~G~pG~GKT~la~~la~--~l~~~~~~~~~~~~n~-~~~~~~~~~~v~~~   89 (608)
T TIGR00764        17 IDQVIGQEEAVEIIKKAAKQKR----NVLLIGEPGVGKSMLAKAMAE--LLPDEELEDILVYPNP-EDPNMPRIVEVPAG   89 (608)
T ss_pred             HhhccCHHHHHHHHHHHHHcCC----CEEEECCCCCCHHHHHHHHHH--HcCchhheeEEEEeCC-CCCchHHHHHHHHh
Confidence            4678999998888887776642    566999999999999999988  44433 3444444333 23566778888877


Q ss_pred             hCC
Q 045087          120 LMP  122 (157)
Q Consensus       120 l~~  122 (157)
                      ++.
T Consensus        90 ~g~   92 (608)
T TIGR00764        90 EGR   92 (608)
T ss_pred             hch
Confidence            764

Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.

>PRK05439 pantothenate kinase; Provisional

Probab=97.55  E-value=0.00097  Score=51.76  Aligned_cols=25  Identities=16%  Similarity=0.068  Sum_probs=22.4

Q ss_pred             CCceEEEEEeCCCCcHHHHHHHHhc
Q 045087           63 PQLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        63 ~~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ...-+|+|.|.+|+||||+|+.+..
T Consensus        84 ~~~~iIgIaG~~gsGKSTla~~L~~  108 (311)
T PRK05439         84 KVPFIIGIAGSVAVGKSTTARLLQA  108 (311)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHH
Confidence            4577999999999999999998876

>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]

Probab=97.55  E-value=0.00095  Score=51.44  Aligned_cols=45  Identities=20%  Similarity=0.175  Sum_probs=36.3

Q ss_pred             CccccHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087           43 DTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        43 ~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      .++|.+..+.++..+..........+.++|++|+||||+|..+.+
T Consensus         2 ~~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~   46 (325)
T COG0470           2 ELVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAK   46 (325)
T ss_pred             CcccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHH
Confidence            467888888999998875442333599999999999999998877

>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]

Probab=97.54  E-value=0.0013  Score=49.17  Aligned_cols=54  Identities=17%  Similarity=0.129  Sum_probs=39.7

Q ss_pred             CCCCccccHHHHHHHHHHHhc--CCCCceEEEEEeCCCCcHHHHHHHHhcCccccccc
Q 045087           40 KSRDTVGLDDRMEELLDLLIE--GPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYF   95 (157)
Q Consensus        40 ~~~~~vGr~~~~~~l~~~L~~--~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F   95 (157)
                      .-..++|.+.+.+.|.+--..  .......|.+||..|.|||+|.+++++  ++.+..
T Consensus        58 ~L~~l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~--e~~~~g  113 (287)
T COG2607          58 DLADLVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLN--EYADEG  113 (287)
T ss_pred             CHHHHhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHH--HHHhcC
Confidence            335789999999888654321  222455788999999999999999988  555544

>PRK05973 replicative DNA helicase; Provisional

Probab=97.54  E-value=0.00097  Score=49.83  Aligned_cols=53  Identities=15%  Similarity=0.041  Sum_probs=34.3

Q ss_pred             cCCCCceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCCCCCHHHHHHHH
Q 045087           60 EGPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPYTCYADQILDII  116 (157)
Q Consensus        60 ~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~l~~i  116 (157)
                      .+-....++.|.|.+|+|||++|..+...  .-..-..++|++...+  ..++...+
T Consensus        59 GGl~~Gsl~LIaG~PG~GKT~lalqfa~~--~a~~Ge~vlyfSlEes--~~~i~~R~  111 (237)
T PRK05973         59 SQLKPGDLVLLGARPGHGKTLLGLELAVE--AMKSGRTGVFFTLEYT--EQDVRDRL  111 (237)
T ss_pred             CCCCCCCEEEEEeCCCCCHHHHHHHHHHH--HHhcCCeEEEEEEeCC--HHHHHHHH
Confidence            33345568999999999999999877652  2222345667766553  45555554

>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor

Probab=97.54  E-value=0.00053  Score=48.57  Aligned_cols=44  Identities=18%  Similarity=0.152  Sum_probs=32.4

Q ss_pred             ccccHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087           44 TVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        44 ~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ++|....+.++.+.+..-......|.|+|..|+||+.+|+.+++
T Consensus         1 liG~s~~m~~~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~   44 (168)
T PF00158_consen    1 LIGESPAMKRLREQAKRAASSDLPVLITGETGTGKELLARAIHN   44 (168)
T ss_dssp             SS--SHHHHHHHHHHHHHTTSTS-EEEECSTTSSHHHHHHHHHH
T ss_pred             CEeCCHHHHHHHHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHH
Confidence            47778888888887754222335677999999999999999998

These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....

>PRK07764 DNA polymerase III subunits gamma and tau; Validated

Probab=97.54  E-value=0.00082  Score=58.47  Aligned_cols=47  Identities=23%  Similarity=0.120  Sum_probs=38.6

Q ss_pred             CCCccccHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhcC
Q 045087           41 SRDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSS   88 (157)
Q Consensus        41 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~   88 (157)
                      ..+++|.+..++.|.+++..+. -...+.++|..|+||||+|+.+.+.
T Consensus        14 f~eiiGqe~v~~~L~~~i~~~r-i~Ha~Lf~Gp~G~GKTt~A~~lAr~   60 (824)
T PRK07764         14 FAEVIGQEHVTEPLSTALDSGR-INHAYLFSGPRGCGKTSSARILARS   60 (824)
T ss_pred             HHHhcCcHHHHHHHHHHHHhCC-CCceEEEECCCCCCHHHHHHHHHHH
Confidence            4578999999999999987653 2345789999999999999988763

>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical

Probab=97.53  E-value=0.00015  Score=53.40  Aligned_cols=100  Identities=21%  Similarity=0.162  Sum_probs=58.2

Q ss_pred             HHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCCCCCHHHHHHHHHHHhCCCC---------
Q 045087           54 LLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPYTCYADQILDIIIKFLMPSS---------  124 (157)
Q Consensus        54 l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~l~~i~~~l~~~~---------  124 (157)
                      |-++|..+-+...++.|.|.+|+|||+++.++... ..++.=+.++|++...+  ..++++.+. .++-+-         
T Consensus         8 LD~~l~GGip~gs~~li~G~~GsGKT~l~~q~l~~-~~~~~ge~vlyvs~ee~--~~~l~~~~~-s~g~d~~~~~~~g~l   83 (226)
T PF06745_consen    8 LDELLGGGIPKGSVVLISGPPGSGKTTLALQFLYN-GLKNFGEKVLYVSFEEP--PEELIENMK-SFGWDLEEYEDSGKL   83 (226)
T ss_dssp             HHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHH-HHHHHT--EEEEESSS---HHHHHHHHH-TTTS-HHHHHHTTSE
T ss_pred             HHHhhcCCCCCCcEEEEEeCCCCCcHHHHHHHHHH-hhhhcCCcEEEEEecCC--HHHHHHHHH-HcCCcHHHHhhcCCE
Confidence            44455444456679999999999999999775541 22221345778887654  355555533 332110         


Q ss_pred             ----CCcccc---cccHHHHHHHHHHHhcC-CcEEEEeeCC
Q 045087          125 ----RLSEIK---DKNYEMKKIILHEYLMT-KRYLIVIDDV  157 (157)
Q Consensus       125 ----~~~~~~---~~~~~~~~~~l~~~L~~-kr~LlVlDdV  157 (157)
                          ..+...   ..+.+.+...+.+.++. +...+|+|.+
T Consensus        84 ~~~d~~~~~~~~~~~~~~~l~~~i~~~i~~~~~~~vVIDsl  124 (226)
T PF06745_consen   84 KIIDAFPERIGWSPNDLEELLSKIREAIEELKPDRVVIDSL  124 (226)
T ss_dssp             EEEESSGGGST-TSCCHHHHHHHHHHHHHHHTSSEEEEETH
T ss_pred             EEEecccccccccccCHHHHHHHHHHHHHhcCCCEEEEECH
Confidence                000000   34677788888887754 3478899863

More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....

>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB

Probab=97.53  E-value=0.00078  Score=59.00  Aligned_cols=46  Identities=24%  Similarity=0.395  Sum_probs=37.2

Q ss_pred             CCccccHHHHHHHHHHHhcC------C-CCceEEEEEeCCCCcHHHHHHHHhc
Q 045087           42 RDTVGLDDRMEELLDLLIEG------P-PQLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        42 ~~~vGr~~~~~~l~~~L~~~------~-~~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ..++|.+..++.+.+.+...      . .....+.++|++|+|||++|+.+..
T Consensus       565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~  617 (852)
T TIGR03346       565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAE  617 (852)
T ss_pred             cccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHH
Confidence            56899999999998888642      1 1235678999999999999999987

Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.

>cd00984 DnaB_C DnaB helicase C terminal domain

Probab=97.52  E-value=0.0016  Score=48.39  Aligned_cols=54  Identities=19%  Similarity=0.148  Sum_probs=34.0

Q ss_pred             CCCCceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCCCCCHHHHHHHHH
Q 045087           61 GPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPYTCYADQILDIII  117 (157)
Q Consensus        61 ~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~l~~i~  117 (157)
                      +-....++.|.|.+|+|||+++..+..+ -...+=...+|+++..  +..++...++
T Consensus         9 Gl~~G~l~lI~G~~G~GKT~~~~~~~~~-~~~~~g~~vly~s~E~--~~~~~~~r~~   62 (242)
T cd00984           9 GLQPGDLIIIAARPSMGKTAFALNIAEN-IAKKQGKPVLFFSLEM--SKEQLLQRLL   62 (242)
T ss_pred             CCCCCeEEEEEeCCCCCHHHHHHHHHHH-HHHhCCCceEEEeCCC--CHHHHHHHHH
Confidence            3344568999999999999999877653 2222123566777544  3344444443

The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.

>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional

Probab=97.52  E-value=0.00021  Score=61.63  Aligned_cols=46  Identities=15%  Similarity=0.198  Sum_probs=37.1

Q ss_pred             CCccccHHHHHHHHHHHhcC-------CCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087           42 RDTVGLDDRMEELLDLLIEG-------PPQLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        42 ~~~vGr~~~~~~l~~~L~~~-------~~~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ..++|.++.++.|.+.+...       ......+.++|++|+|||++|+.+..
T Consensus       458 ~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~  510 (758)
T PRK11034        458 MLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSK  510 (758)
T ss_pred             ceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHH
Confidence            46899999999998888631       12245688999999999999999987

>PRK14974 cell division protein FtsY; Provisional

Probab=97.52  E-value=0.00076  Score=52.92  Aligned_cols=24  Identities=17%  Similarity=0.106  Sum_probs=20.9

Q ss_pred             CceEEEEEeCCCCcHHHHHHHHhc
Q 045087           64 QLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        64 ~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      +..++.++|++|+||||++..+++
T Consensus       139 ~~~vi~~~G~~GvGKTTtiakLA~  162 (336)
T PRK14974        139 KPVVIVFVGVNGTGKTTTIAKLAY  162 (336)
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHH
Confidence            357999999999999998887776

>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.51  E-value=0.00054  Score=54.42  Aligned_cols=24  Identities=17%  Similarity=0.256  Sum_probs=21.6

Q ss_pred             CceEEEEEeCCCCcHHHHHHHHhc
Q 045087           64 QLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        64 ~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      +..++.++|+.|+||||++.++..
T Consensus       136 ~g~ii~lvGptGvGKTTtiakLA~  159 (374)
T PRK14722        136 RGGVFALMGPTGVGKTTTTAKLAA  159 (374)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            357999999999999999998877

>CHL00195 ycf46 Ycf46; Provisional

Probab=97.51  E-value=0.00034  Score=57.46  Aligned_cols=47  Identities=21%  Similarity=0.192  Sum_probs=33.0

Q ss_pred             CCCccccHHHHHHHHHHHhc--------CCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087           41 SRDTVGLDDRMEELLDLLIE--------GPPQLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        41 ~~~~vGr~~~~~~l~~~L~~--------~~~~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      .+++.|.+...+.|......        +-...+-+.++|++|+|||.+|+++.+
T Consensus       227 ~~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~  281 (489)
T CHL00195        227 ISDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIAN  281 (489)
T ss_pred             HHHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHH
Confidence            35677877666665543211        112346788999999999999999988

>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]

Probab=97.51  E-value=0.00018  Score=56.33  Aligned_cols=47  Identities=21%  Similarity=0.277  Sum_probs=37.6

Q ss_pred             CCccccHHHHHHHHHHHhcC-----------CCCceEEEEEeCCCCcHHHHHHHHhcC
Q 045087           42 RDTVGLDDRMEELLDLLIEG-----------PPQLSAVTILDSIGLDKTAFAAEAYSS   88 (157)
Q Consensus        42 ~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~gGiGKTtLa~~v~~~   88 (157)
                      ..+=|.++++++|.+.+.-.           =...+=|.+||++|.|||-||++|+++
T Consensus       151 ~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~  208 (406)
T COG1222         151 EDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQ  208 (406)
T ss_pred             hhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhc
Confidence            45677899999998887421           134567889999999999999999994

>PRK14965 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.51  E-value=0.0011  Score=55.63  Aligned_cols=47  Identities=19%  Similarity=0.138  Sum_probs=38.7

Q ss_pred             CCCCccccHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087           40 KSRDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        40 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ..++++|.+.-++.|.+.+..+. -...+.++|..|+||||+|+.+..
T Consensus        14 ~f~~iiGq~~v~~~L~~~i~~~~-~~hayLf~Gp~G~GKtt~A~~lak   60 (576)
T PRK14965         14 TFSDLTGQEHVSRTLQNAIDTGR-VAHAFLFTGARGVGKTSTARILAK   60 (576)
T ss_pred             CHHHccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHH
Confidence            34689999999999999987653 234567899999999999998876

>TIGR00678 holB DNA polymerase III, delta' subunit

Probab=97.50  E-value=0.0014  Score=46.89  Aligned_cols=34  Identities=21%  Similarity=0.151  Sum_probs=25.3

Q ss_pred             HHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087           53 ELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        53 ~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      .|.+.+..+. -...+.++|..|+|||++|+.+..
T Consensus         3 ~l~~~i~~~~-~~~~~L~~G~~G~gkt~~a~~~~~   36 (188)
T TIGR00678         3 QLKRALEKGR-LAHAYLFAGPEGVGKELLALALAK   36 (188)
T ss_pred             HHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHH
Confidence            4555555442 235788999999999999988866

At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.

>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family

Probab=97.50  E-value=0.00027  Score=61.73  Aligned_cols=46  Identities=17%  Similarity=0.254  Sum_probs=36.8

Q ss_pred             CCccccHHHHHHHHHHHhc-------CCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087           42 RDTVGLDDRMEELLDLLIE-------GPPQLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        42 ~~~vGr~~~~~~l~~~L~~-------~~~~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ..++|.+..++.+.+.+..       ......++.++|++|+|||.||+.+.+
T Consensus       566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~  618 (852)
T TIGR03345       566 ERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAE  618 (852)
T ss_pred             CeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHH
Confidence            5789999999999888743       112345788999999999999998876

Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.

>PRK14959 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.49  E-value=0.001  Score=56.06  Aligned_cols=47  Identities=17%  Similarity=0.065  Sum_probs=38.3

Q ss_pred             CCCccccHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhcC
Q 045087           41 SRDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSS   88 (157)
Q Consensus        41 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~   88 (157)
                      ..+++|.+..++.|.+.+..+. -...+.++|+.|+||||+|+.+...
T Consensus        15 f~dIiGQe~v~~~L~~ai~~~r-i~ha~Lf~GPpG~GKTtiArilAk~   61 (624)
T PRK14959         15 FAEVAGQETVKAILSRAAQENR-VAPAYLFSGTRGVGKTTIARIFAKA   61 (624)
T ss_pred             HHHhcCCHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHh
Confidence            4578999988888888887653 2457778999999999999988773

>PRK06647 DNA polymerase III subunits gamma and tau; Validated

Probab=97.49  E-value=0.0013  Score=55.12  Aligned_cols=47  Identities=19%  Similarity=0.063  Sum_probs=39.6

Q ss_pred             CCCccccHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhcC
Q 045087           41 SRDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSS   88 (157)
Q Consensus        41 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~   88 (157)
                      ..+++|.+..++.|.+++..+. -.+.+.++|..|+||||+|+.+...
T Consensus        15 f~diiGqe~iv~~L~~~i~~~~-i~hayLf~Gp~G~GKTt~Ar~lAk~   61 (563)
T PRK06647         15 FNSLEGQDFVVETLKHSIESNK-IANAYIFSGPRGVGKTSSARAFARC   61 (563)
T ss_pred             HHHccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHh
Confidence            4678999999999999997753 3456789999999999999998773

>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A

Probab=97.49  E-value=0.00024  Score=54.21  Aligned_cols=33  Identities=30%  Similarity=0.372  Sum_probs=25.4

Q ss_pred             HHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087           52 EELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        52 ~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ..|.+.+...   .+.+.++|..|+|||++++...+
T Consensus        23 ~~ll~~l~~~---~~pvLl~G~~GtGKT~li~~~l~   55 (272)
T PF12775_consen   23 SYLLDLLLSN---GRPVLLVGPSGTGKTSLIQNFLS   55 (272)
T ss_dssp             HHHHHHHHHC---TEEEEEESSTTSSHHHHHHHHHH
T ss_pred             HHHHHHHHHc---CCcEEEECCCCCchhHHHHhhhc
Confidence            4455555553   35778999999999999998876

>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]

Probab=97.48  E-value=0.0017  Score=55.48  Aligned_cols=96  Identities=17%  Similarity=0.238  Sum_probs=63.5

Q ss_pred             CCCCCCccccHHHHHHHHHHHhc----------CCCCceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCCCC
Q 045087           38 SSKSRDTVGLDDRMEELLDLLIE----------GPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPYTC  107 (157)
Q Consensus        38 ~~~~~~~vGr~~~~~~l~~~L~~----------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~  107 (157)
                      ....+++=|.++-..+|.+-+.-          +-.+..=|.+||++|.|||-||++|+.  +..     --|+++..+ 
T Consensus       668 nV~WdDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVAT--Ecs-----L~FlSVKGP-  739 (953)
T KOG0736|consen  668 NVSWDDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVAT--ECS-----LNFLSVKGP-  739 (953)
T ss_pred             ccchhcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHh--hce-----eeEEeecCH-
Confidence            34456788889888888876632          223356788999999999999999988  221     235666554 


Q ss_pred             CHHHHHHHHHHHhCCCCCCcccccccHHHHHHHHHHHhcCCcEEEEeeCC
Q 045087          108 YADQILDIIIKFLMPSSRLSEIKDKNYEMKKIILHEYLMTKRYLIVIDDV  157 (157)
Q Consensus       108 ~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdV  157 (157)
                         ++++.   .          -..+++.+.+.+.+.=+.++|.|.+|++
T Consensus       740 ---ELLNM---Y----------VGqSE~NVR~VFerAR~A~PCVIFFDEL  773 (953)
T KOG0736|consen  740 ---ELLNM---Y----------VGQSEENVREVFERARSAAPCVIFFDEL  773 (953)
T ss_pred             ---HHHHH---H----------hcchHHHHHHHHHHhhccCCeEEEeccc
Confidence               12211   1          2223455666666666778899999974

>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B

Probab=97.48  E-value=0.00011  Score=49.90  Aligned_cols=21  Identities=14%  Similarity=0.184  Sum_probs=19.0

Q ss_pred             EEEEEeCCCCcHHHHHHHHhc
Q 045087           67 AVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        67 vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      +|.++|++|+||||+|+.+..
T Consensus         1 lii~~G~pgsGKSt~a~~l~~   21 (143)
T PF13671_consen    1 LIILCGPPGSGKSTLAKRLAK   21 (143)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHH
Confidence            578899999999999999885

...

>PRK05480 uridine/cytidine kinase; Provisional

Probab=97.48  E-value=0.00011  Score=53.61  Aligned_cols=24  Identities=25%  Similarity=0.303  Sum_probs=22.1

Q ss_pred             CceEEEEEeCCCCcHHHHHHHHhc
Q 045087           64 QLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        64 ~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      +..+|+|.|.+|+||||||+.++.
T Consensus         5 ~~~iI~I~G~sGsGKTTl~~~l~~   28 (209)
T PRK05480          5 KPIIIGIAGGSGSGKTTVASTIYE   28 (209)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            467999999999999999999987

>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]

Probab=97.47  E-value=0.0013  Score=52.48  Aligned_cols=23  Identities=22%  Similarity=0.320  Sum_probs=18.9

Q ss_pred             ceEEEEEeCCCCcHH-HHHHHHhc
Q 045087           65 LSAVTILDSIGLDKT-AFAAEAYS   87 (157)
Q Consensus        65 ~~vi~I~G~gGiGKT-tLa~~v~~   87 (157)
                      .+++.++|+.|+||| |||+..++
T Consensus       203 ~~vi~LVGPTGVGKTTTlAKLAar  226 (407)
T COG1419         203 KRVIALVGPTGVGKTTTLAKLAAR  226 (407)
T ss_pred             CcEEEEECCCCCcHHHHHHHHHHH
Confidence            789999999999999 56665554

>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]

Probab=97.47  E-value=0.0003  Score=59.51  Aligned_cols=52  Identities=23%  Similarity=0.384  Sum_probs=43.1

Q ss_pred             CCccccHHHHHHHHHHHhc----CCCCceEEEEEeCCCCcHHHHHHHHhcCccccccc
Q 045087           42 RDTVGLDDRMEELLDLLIE----GPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYF   95 (157)
Q Consensus        42 ~~~vGr~~~~~~l~~~L~~----~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F   95 (157)
                      ++=+|.++-.+++.+.+.-    +..+.++++.+|++|+|||++|+.+++  .+...|
T Consensus       411 eDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~--ALnRkF  466 (906)
T KOG2004|consen  411 EDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIAR--ALNRKF  466 (906)
T ss_pred             ccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHH--HhCCce
Confidence            5678999999999999853    456678999999999999999999988  554444

>PRK12597 F0F1 ATP synthase subunit beta; Provisional

Probab=97.47  E-value=0.00045  Score=56.25  Aligned_cols=93  Identities=11%  Similarity=0.142  Sum_probs=57.0

Q ss_pred             CceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCCCC-CHHHHHHHHHHHhCCCCCC---cccccccH-----
Q 045087           64 QLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPYTC-YADQILDIIIKFLMPSSRL---SEIKDKNY-----  134 (157)
Q Consensus        64 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~-~~~~~l~~i~~~l~~~~~~---~~~~~~~~-----  134 (157)
                      +...++|.|.+|+|||||+..+.+.... .+-+.++++.++... ...+++..+...-......   ...+....     
T Consensus       142 kGQR~gIfa~~G~GKt~Ll~~~~~~~~~-~~~dv~V~~liGER~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~~a  220 (461)
T PRK12597        142 KGGKTGLFGGAGVGKTVLMMELIFNISK-QHSGSSVFAGVGERSREGHELYHEMKESGVLDKTVMVYGQMNEPPGARMRV  220 (461)
T ss_pred             cCCEEEeecCCCCChhHHHHHHHHHHHh-hCCCEEEEEcCCcchHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHHHH
Confidence            4568999999999999999888774222 245677888877654 4567777766432211100   00111111     


Q ss_pred             HHHHHHHHHHh---cCCcEEEEeeCC
Q 045087          135 EMKKIILHEYL---MTKRYLIVIDDV  157 (157)
Q Consensus       135 ~~~~~~l~~~L---~~kr~LlVlDdV  157 (157)
                      ....-.+.+++   .++.+||++||+
T Consensus       221 ~~~a~tiAEyfrd~~G~~VLl~~Dsl  246 (461)
T PRK12597        221 VLTGLTIAEYLRDEEKEDVLLFIDNI  246 (461)
T ss_pred             HHHHHHHHHHHHHhcCCceEEEeccc
Confidence            22334455666   378999999985

>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []

Probab=97.47  E-value=0.00031  Score=47.69  Aligned_cols=43  Identities=14%  Similarity=0.162  Sum_probs=29.9

Q ss_pred             EEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCCCCCHHHHHHH
Q 045087           68 VTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPYTCYADQILDI  115 (157)
Q Consensus        68 i~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~l~~  115 (157)
                      |.++|.+|+|||+||+.+++  ....   ...-+.++...+..+++..
T Consensus         2 vlL~G~~G~GKt~l~~~la~--~~~~---~~~~i~~~~~~~~~dl~g~   44 (139)
T PF07728_consen    2 VLLVGPPGTGKTTLARELAA--LLGR---PVIRINCSSDTTEEDLIGS   44 (139)
T ss_dssp             EEEEESSSSSHHHHHHHHHH--HHTC---EEEEEE-TTTSTHHHHHCE
T ss_pred             EEEECCCCCCHHHHHHHHHH--Hhhc---ceEEEEeccccccccceee
Confidence            67899999999999999988  3321   2233566777777766543

The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.

>PRK15453 phosphoribulokinase; Provisional

Probab=97.46  E-value=0.0014  Score=50.19  Aligned_cols=24  Identities=13%  Similarity=0.115  Sum_probs=21.6

Q ss_pred             CceEEEEEeCCCCcHHHHHHHHhc
Q 045087           64 QLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        64 ~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      +..+|+|.|.+|+||||+|+.+.+
T Consensus         4 k~piI~ItG~SGsGKTTva~~l~~   27 (290)
T PRK15453          4 KHPIIAVTGSSGAGTTTVKRAFEK   27 (290)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            467999999999999999998875

>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic

Probab=97.45  E-value=0.00057  Score=53.67  Aligned_cols=20  Identities=10%  Similarity=0.059  Sum_probs=18.2

Q ss_pred             EEEEeCCCCcHHHHHHHHhc
Q 045087           68 VTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        68 i~I~G~gGiGKTtLa~~v~~   87 (157)
                      +.+.|++|.||||+++.+.+
T Consensus         2 ~~l~Gl~GaGKST~~~~l~~   21 (340)
T TIGR03575         2 CVLCGLPAAGKSTLARSLSA   21 (340)
T ss_pred             eEEECCCCCCHHHHHHHHHH
Confidence            57889999999999999887

Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.

>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2

Probab=97.45  E-value=0.00031  Score=50.20  Aligned_cols=21  Identities=33%  Similarity=0.363  Sum_probs=19.4

Q ss_pred             EEEEEeCCCCcHHHHHHHHhc
Q 045087           67 AVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        67 vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      +|+|.|.+|+||||||..+..
T Consensus         1 ii~i~G~sgsGKttla~~l~~   21 (179)
T cd02028           1 VVGIAGPSGSGKTTFAKKLSN   21 (179)
T ss_pred             CEEEECCCCCCHHHHHHHHHH
Confidence            489999999999999999887

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).

>TIGR02902 spore_lonB ATP-dependent protease LonB

Probab=97.44  E-value=0.00016  Score=60.01  Aligned_cols=45  Identities=22%  Similarity=0.228  Sum_probs=37.5

Q ss_pred             CCCccccHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087           41 SRDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        41 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      .++++|.+..++.|...+....  ...+.|+|.+|+|||++|+.+++
T Consensus        64 f~~iiGqs~~i~~l~~al~~~~--~~~vLi~Ge~GtGKt~lAr~i~~  108 (531)
T TIGR02902        64 FDEIIGQEEGIKALKAALCGPN--PQHVIIYGPPGVGKTAAARLVLE  108 (531)
T ss_pred             HHHeeCcHHHHHHHHHHHhCCC--CceEEEECCCCCCHHHHHHHHHH
Confidence            4579999999999988775543  45678999999999999999976

Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.

>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]

Probab=97.44  E-value=0.0014  Score=55.35  Aligned_cols=111  Identities=14%  Similarity=0.081  Sum_probs=76.1

Q ss_pred             CCCCccccHHHHHHHHHHHhc---CCCCceEEEEEeCCCCcHHHHHHHHhcCcc---cccccC--eeEEEEcCCCCCHHH
Q 045087           40 KSRDTVGLDDRMEELLDLLIE---GPPQLSAVTILDSIGLDKTAFAAEAYSSNY---MKHYFD--CHAWVQEPYTCYADQ  111 (157)
Q Consensus        40 ~~~~~vGr~~~~~~l~~~L~~---~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~---~~~~F~--~~~wv~~~~~~~~~~  111 (157)
                      .+..+-+|+.+..+|...+..   +......+.|.|-+|.|||..+..|....+   -++.-.  +.+.++--.-..+.+
T Consensus       394 vp~sLpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~~  473 (767)
T KOG1514|consen  394 VPESLPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPRE  473 (767)
T ss_pred             ccccccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecCHHH
Confidence            567788999999999988853   222345899999999999999999987322   111222  234444445567999


Q ss_pred             HHHHHHHHhCCCCCCcccccccHHHHHHHHHHHhc-----CCcEEEEeeCC
Q 045087          112 ILDIIIKFLMPSSRLSEIKDKNYEMKKIILHEYLM-----TKRYLIVIDDV  157 (157)
Q Consensus       112 ~l~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~-----~kr~LlVlDdV  157 (157)
                      ++..|+.++.+...       .-..-++.|..++.     .+.++|++|++
T Consensus       474 ~Y~~I~~~lsg~~~-------~~~~al~~L~~~f~~~k~~~~~~VvLiDEl  517 (767)
T KOG1514|consen  474 IYEKIWEALSGERV-------TWDAALEALNFRFTVPKPKRSTTVVLIDEL  517 (767)
T ss_pred             HHHHHHHhcccCcc-------cHHHHHHHHHHhhccCCCCCCCEEEEeccH
Confidence            99999999987543       22344555555553     34588888874

>PRK08149 ATP synthase SpaL; Validated

Probab=97.44  E-value=0.00077  Score=54.44  Aligned_cols=90  Identities=13%  Similarity=0.070  Sum_probs=51.1

Q ss_pred             CceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCC-CCCHHHHHHHHHHHhCCCCCC---cccccccH-----
Q 045087           64 QLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPY-TCYADQILDIIIKFLMPSSRL---SEIKDKNY-----  134 (157)
Q Consensus        64 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~-~~~~~~~l~~i~~~l~~~~~~---~~~~~~~~-----  134 (157)
                      +...++|+|.+|+|||||+..++....    -+..++..+.. .....++....+.........   ...+....     
T Consensus       150 ~Gq~i~I~G~sG~GKTTLl~~i~~~~~----~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd~p~~~r~~a  225 (428)
T PRK08149        150 VGQRMGIFASAGCGKTSLMNMLIEHSE----ADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATSDFSSVDRCNA  225 (428)
T ss_pred             cCCEEEEECCCCCChhHHHHHHhcCCC----CCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECCCCCHHHHHhH
Confidence            346899999999999999999987321    22333333433 335566666666543211000   00111111     


Q ss_pred             HHHHHHHHHHh--cCCcEEEEeeCC
Q 045087          135 EMKKIILHEYL--MTKRYLIVIDDV  157 (157)
Q Consensus       135 ~~~~~~l~~~L--~~kr~LlVlDdV  157 (157)
                      ......+.+++  ++|.+||++||+
T Consensus       226 ~~~a~tiAE~fr~~G~~Vll~~Dsl  250 (428)
T PRK08149        226 ALVATTVAEYFRDQGKRVVLFIDSM  250 (428)
T ss_pred             HHHHHHHHHHHHHcCCCEEEEccch
Confidence            12233344444  589999999985

>PRK00889 adenylylsulfate kinase; Provisional

Probab=97.44  E-value=0.00053  Score=48.53  Aligned_cols=24  Identities=21%  Similarity=0.057  Sum_probs=21.6

Q ss_pred             CceEEEEEeCCCCcHHHHHHHHhc
Q 045087           64 QLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        64 ~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ...++.|+|++|+||||+|+.+..
T Consensus         3 ~g~~i~~~G~~GsGKST~a~~la~   26 (175)
T PRK00889          3 RGVTVWFTGLSGAGKTTIARALAE   26 (175)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            356899999999999999999887

>PRK06762 hypothetical protein; Provisional

Probab=97.44  E-value=0.00012  Score=51.31  Aligned_cols=23  Identities=22%  Similarity=0.225  Sum_probs=20.6

Q ss_pred             ceEEEEEeCCCCcHHHHHHHHhc
Q 045087           65 LSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        65 ~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ..+|.|+|++|+||||+|+.+.+
T Consensus         2 ~~li~i~G~~GsGKST~A~~L~~   24 (166)
T PRK06762          2 TTLIIIRGNSGSGKTTIAKQLQE   24 (166)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            35889999999999999998877

>PRK05563 DNA polymerase III subunits gamma and tau; Validated

Probab=97.43  E-value=0.002  Score=53.90  Aligned_cols=47  Identities=21%  Similarity=0.150  Sum_probs=38.9

Q ss_pred             CCCCccccHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087           40 KSRDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        40 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ...+++|.+..++.|.+++..+. -.+.+.++|..|+|||++|+.+..
T Consensus        14 ~f~~viGq~~v~~~L~~~i~~~~-~~hayLf~Gp~GtGKTt~Ak~lAk   60 (559)
T PRK05563         14 TFEDVVGQEHITKTLKNAIKQGK-ISHAYLFSGPRGTGKTSAAKIFAK   60 (559)
T ss_pred             cHHhccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHH
Confidence            34689999999999999998754 245567899999999999998866

>TIGR00150 HI0065_YjeE ATPase, YjeE family

Probab=97.43  E-value=0.0003  Score=47.92  Aligned_cols=42  Identities=12%  Similarity=0.126  Sum_probs=31.1

Q ss_pred             HHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhcCc
Q 045087           48 DDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSSN   89 (157)
Q Consensus        48 ~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~   89 (157)
                      .++.+++.+.|...-....++.+.|.-|.||||+++.+.+..
T Consensus         5 ~~~t~~l~~~l~~~l~~~~~i~l~G~lGaGKTtl~~~l~~~l   46 (133)
T TIGR00150         5 EKAMDKFGKAFAKPLDFGTVVLLKGDLGAGKTTLVQGLLQGL   46 (133)
T ss_pred             HHHHHHHHHHHHHhCCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence            345566666665433345689999999999999999998843

Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.

>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B

Probab=97.42  E-value=0.00073  Score=51.48  Aligned_cols=94  Identities=17%  Similarity=0.122  Sum_probs=56.8

Q ss_pred             CceEEEEEeCCCCcHHHHHHHHhcCccc--ccccCeeEEEEcCCCC-CHHHHHHHHHHHhCCCCCC---cccccccHH--
Q 045087           64 QLSAVTILDSIGLDKTAFAAEAYSSNYM--KHYFDCHAWVQEPYTC-YADQILDIIIKFLMPSSRL---SEIKDKNYE--  135 (157)
Q Consensus        64 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~--~~~F~~~~wv~~~~~~-~~~~~l~~i~~~l~~~~~~---~~~~~~~~~--  135 (157)
                      +-..++|.|-.|+|||+|+..+.++..+  +.+-+.++++.+++.. ...++++.+...=......   ...+.....  
T Consensus        68 ~GQR~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~r~  147 (276)
T cd01135          68 RGQKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAAMGITMEDARFFKDDFEETGALERVVLFLNLANDPTIERI  147 (276)
T ss_pred             cCCEEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEEEeccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHHHH
Confidence            3467899999999999999888774321  1234678888888765 4566777665532111100   001111212  


Q ss_pred             ---HHHHHHHHHhc---CCcEEEEeeCC
Q 045087          136 ---MKKIILHEYLM---TKRYLIVIDDV  157 (157)
Q Consensus       136 ---~~~~~l~~~L~---~kr~LlVlDdV  157 (157)
                         .....+.++++   ++++|+++||+
T Consensus       148 ~a~~~a~aiAEyfrd~~g~~VLl~~D~l  175 (276)
T cd01135         148 ITPRMALTTAEYLAYEKGKHVLVILTDM  175 (276)
T ss_pred             HHHHHHHHHHHHHHhccCCeEEEEEcCh
Confidence               12333555553   68899999995

These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.

>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]

Probab=97.42  E-value=0.00099  Score=53.40  Aligned_cols=38  Identities=16%  Similarity=0.013  Sum_probs=29.2

Q ss_pred             CCceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEE
Q 045087           63 PQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQ  102 (157)
Q Consensus        63 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~  102 (157)
                      .....+.|||..|.|||.|++++.+  ....+......+.
T Consensus       111 ~~~nplfi~G~~GlGKTHLl~Aign--~~~~~~~~a~v~y  148 (408)
T COG0593         111 GAYNPLFIYGGVGLGKTHLLQAIGN--EALANGPNARVVY  148 (408)
T ss_pred             CcCCcEEEECCCCCCHHHHHHHHHH--HHHhhCCCceEEe
Confidence            3577999999999999999999999  6666654333333

>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN

Probab=97.42  E-value=0.00066  Score=51.40  Aligned_cols=54  Identities=15%  Similarity=0.129  Sum_probs=33.8

Q ss_pred             HHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCCCCCHHHHH
Q 045087           51 MEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPYTCYADQIL  113 (157)
Q Consensus        51 ~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~l  113 (157)
                      ++.+..++..+    ..+.++|.+|+|||+||+.+..  ....   ...++++....+..+++
T Consensus        11 ~~~~l~~l~~g----~~vLL~G~~GtGKT~lA~~la~--~lg~---~~~~i~~~~~~~~~dll   64 (262)
T TIGR02640        11 TSRALRYLKSG----YPVHLRGPAGTGKTTLAMHVAR--KRDR---PVMLINGDAELTTSDLV   64 (262)
T ss_pred             HHHHHHHHhcC----CeEEEEcCCCCCHHHHHHHHHH--HhCC---CEEEEeCCccCCHHHHh
Confidence            34444444443    3667899999999999999986  3322   23445555555544444

Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).

>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=97.41  E-value=0.001  Score=51.30  Aligned_cols=47  Identities=19%  Similarity=0.238  Sum_probs=38.4

Q ss_pred             CCCccccHHHHHHHHHHHhc----------CCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087           41 SRDTVGLDDRMEELLDLLIE----------GPPQLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        41 ~~~~vGr~~~~~~l~~~L~~----------~~~~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      .+++-|.+...+.|.+.+.-          .....+-|.++|++|.||+.||++|..
T Consensus       132 WsDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVAT  188 (439)
T KOG0739|consen  132 WSDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVAT  188 (439)
T ss_pred             hhhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHh
Confidence            36788999999999887532          123478899999999999999999998

>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]

Probab=97.41  E-value=0.00093  Score=53.35  Aligned_cols=99  Identities=22%  Similarity=0.161  Sum_probs=62.1

Q ss_pred             HHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCCCCCHHHHHHHHHHHhCCCCC-Ccc
Q 045087           50 RMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPYTCYADQILDIIIKFLMPSSR-LSE  128 (157)
Q Consensus        50 ~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~l~~i~~~l~~~~~-~~~  128 (157)
                      ...+|.+.|-.+--...++.|-|-+|+|||||..++..  ++.+.- ...||+-..  +..++ +--+..|+.+.+ .--
T Consensus        78 g~~EldRVLGGG~V~Gs~iLIgGdPGIGKSTLLLQva~--~lA~~~-~vLYVsGEE--S~~Qi-klRA~RL~~~~~~l~l  151 (456)
T COG1066          78 GIEELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAA--RLAKRG-KVLYVSGEE--SLQQI-KLRADRLGLPTNNLYL  151 (456)
T ss_pred             ChHHHHhhhcCCcccccEEEEccCCCCCHHHHHHHHHH--HHHhcC-cEEEEeCCc--CHHHH-HHHHHHhCCCccceEE
Confidence            34666665655445567999999999999999998888  454443 566666444  33332 223345553221 111


Q ss_pred             cccccHHHHHHHHHHHhcCCcEEEEeeCC
Q 045087          129 IKDKNYEMKKIILHEYLMTKRYLIVIDDV  157 (157)
Q Consensus       129 ~~~~~~~~~~~~l~~~L~~kr~LlVlDdV  157 (157)
                      ....+.+++.+.+.+   .+.-|+|+|.+
T Consensus       152 ~aEt~~e~I~~~l~~---~~p~lvVIDSI  177 (456)
T COG1066         152 LAETNLEDIIAELEQ---EKPDLVVIDSI  177 (456)
T ss_pred             ehhcCHHHHHHHHHh---cCCCEEEEecc
Confidence            345666666666665   67889999975

>TIGR00235 udk uridine kinase

Probab=97.41  E-value=0.00014  Score=52.98  Aligned_cols=24  Identities=25%  Similarity=0.224  Sum_probs=21.8

Q ss_pred             CceEEEEEeCCCCcHHHHHHHHhc
Q 045087           64 QLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        64 ~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ...+++|+|.+|+|||||++.+..
T Consensus         5 ~g~vi~I~G~sGsGKSTl~~~l~~   28 (207)
T TIGR00235         5 KGIIIGIGGGSGSGKTTVARKIYE   28 (207)
T ss_pred             CeEEEEEECCCCCCHHHHHHHHHH
Confidence            457999999999999999999986

Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below

>TIGR01817 nifA Nif-specific regulatory protein

Probab=97.41  E-value=0.0012  Score=54.80  Aligned_cols=51  Identities=20%  Similarity=0.134  Sum_probs=41.0

Q ss_pred             CCCCCCccccHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhcC
Q 045087           38 SSKSRDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSS   88 (157)
Q Consensus        38 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~   88 (157)
                      ......++|....++++.+.+..-......|.|+|..|+|||++|+.+++.
T Consensus       192 ~~~~~~liG~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~lA~~ih~~  242 (534)
T TIGR01817       192 SGKEDGIIGKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHYL  242 (534)
T ss_pred             cCccCceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCccHHHHHHHHHHh
Confidence            345578999999999998887643333456789999999999999999883

This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.

>PRK08451 DNA polymerase III subunits gamma and tau; Validated

Probab=97.40  E-value=0.0021  Score=53.37  Aligned_cols=47  Identities=17%  Similarity=0.000  Sum_probs=38.3

Q ss_pred             CCCCccccHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087           40 KSRDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        40 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      .-.+++|.+..++.|...+..+. -...+.++|..|+||||+|+.+..
T Consensus        12 ~fdeiiGqe~v~~~L~~~I~~gr-l~hayLf~Gp~G~GKTt~Ar~LAk   58 (535)
T PRK08451         12 HFDELIGQESVSKTLSLALDNNR-LAHAYLFSGLRGSGKTSSARIFAR   58 (535)
T ss_pred             CHHHccCcHHHHHHHHHHHHcCC-CCeeEEEECCCCCcHHHHHHHHHH
Confidence            34678999999999999987653 334568899999999999998766

>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]

Probab=97.40  E-value=0.00067  Score=51.37  Aligned_cols=54  Identities=17%  Similarity=0.158  Sum_probs=39.2

Q ss_pred             CCCCccccHHHHHH---HHHHHhcC----CCCceEEEEEeCCCCcHHHHHHHHhcCccccccc
Q 045087           40 KSRDTVGLDDRMEE---LLDLLIEG----PPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYF   95 (157)
Q Consensus        40 ~~~~~vGr~~~~~~---l~~~L~~~----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F   95 (157)
                      .-++++|.+....+   |.+.|.+.    ....+-|..+|++|.|||.+|+++.+  +.+..|
T Consensus       119 t~ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalan--e~kvp~  179 (368)
T COG1223         119 TLDDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALAN--EAKVPL  179 (368)
T ss_pred             cHhhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhc--ccCCce
Confidence            34678998887765   34444432    34567899999999999999999999  444433

>PRK07594 type III secretion system ATPase SsaN; Validated

Probab=97.40  E-value=0.00089  Score=54.17  Aligned_cols=90  Identities=14%  Similarity=0.141  Sum_probs=51.0

Q ss_pred             CceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCCC-CCHHHHHHHHHHHhCCCCCC---cccccccHHHH--
Q 045087           64 QLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPYT-CYADQILDIIIKFLMPSSRL---SEIKDKNYEMK--  137 (157)
Q Consensus        64 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~-~~~~~~l~~i~~~l~~~~~~---~~~~~~~~~~~--  137 (157)
                      +...++|.|..|+|||||++.+...  .  +.+..++..++.. ....+++.+....=......   ...+....+.+  
T Consensus       154 ~GqrigI~G~sG~GKSTLL~~I~~~--~--~~d~~vi~~iGeRgrEv~efl~~~~~~~~~~rtv~vv~tsd~p~~~r~~a  229 (433)
T PRK07594        154 EGQRVGIFSAPGVGKSTLLAMLCNA--P--DADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRA  229 (433)
T ss_pred             CCCEEEEECCCCCCccHHHHHhcCC--C--CCCEEEEEEECCCchHHHHHHHHhhccCCcceEEEEEECCCCCHHHHHHH
Confidence            3568999999999999999988873  2  2344556555543 34556666553211000000   00111122222  


Q ss_pred             ---HHHHHHHh--cCCcEEEEeeCC
Q 045087          138 ---KIILHEYL--MTKRYLIVIDDV  157 (157)
Q Consensus       138 ---~~~l~~~L--~~kr~LlVlDdV  157 (157)
                         .-.+.+++  +++++||++||+
T Consensus       230 ~~~a~tiAEyfrd~G~~VLl~~Dsl  254 (433)
T PRK07594        230 LFVATTIAEFFRDNGKRVVLLADSL  254 (433)
T ss_pred             HHHHHHHHHHHHHCCCcEEEEEeCH
Confidence               22244454  588999999985

>PRK06936 type III secretion system ATPase; Provisional

Probab=97.40  E-value=0.00092  Score=54.11  Aligned_cols=90  Identities=16%  Similarity=0.133  Sum_probs=52.8

Q ss_pred             CceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCCCC-CHHHHHHHHHHHhCCCCCC---cccccccHHH---
Q 045087           64 QLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPYTC-YADQILDIIIKFLMPSSRL---SEIKDKNYEM---  136 (157)
Q Consensus        64 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~-~~~~~l~~i~~~l~~~~~~---~~~~~~~~~~---  136 (157)
                      +...++|.|..|+|||||...+++..  .  -+.+++..++... ...+++...+..-+.....   ...+......   
T Consensus       161 ~Gq~~~I~G~sG~GKStLl~~Ia~~~--~--~dv~V~~liGERgrEv~ef~~~~l~~~~l~rtvvv~atsd~p~~~R~~a  236 (439)
T PRK06936        161 EGQRMGIFAAAGGGKSTLLASLIRSA--E--VDVTVLALIGERGREVREFIESDLGEEGLRKAVLVVATSDRPSMERAKA  236 (439)
T ss_pred             CCCEEEEECCCCCChHHHHHHHhcCC--C--CCEEEEEEEccCcHHHHHHHHHHhcccccceeEEEEECCCCCHHHHHHH
Confidence            45689999999999999999998832  2  2466777776654 4555555543321111000   0011111121   


Q ss_pred             --HHHHHHHHh--cCCcEEEEeeCC
Q 045087          137 --KKIILHEYL--MTKRYLIVIDDV  157 (157)
Q Consensus       137 --~~~~l~~~L--~~kr~LlVlDdV  157 (157)
                        ..-.+.+++  +++.+||++||+
T Consensus       237 ~~~a~tiAEyfrd~G~~Vll~~Dsl  261 (439)
T PRK06936        237 GFVATSIAEYFRDQGKRVLLLMDSV  261 (439)
T ss_pred             HHHHHHHHHHHHHcCCCEEEeccch
Confidence              122344444  589999999985

>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model

Probab=97.40  E-value=0.00016  Score=48.93  Aligned_cols=27  Identities=22%  Similarity=0.215  Sum_probs=19.0

Q ss_pred             EEEEeCCCCcHHHHHHHHhcCcccccccC
Q 045087           68 VTILDSIGLDKTAFAAEAYSSNYMKHYFD   96 (157)
Q Consensus        68 i~I~G~gGiGKTtLa~~v~~~~~~~~~F~   96 (157)
                      +.|+|.+|+|||++|+.+..  .+...|.
T Consensus         2 vLleg~PG~GKT~la~~lA~--~~~~~f~   28 (131)
T PF07726_consen    2 VLLEGVPGVGKTTLAKALAR--SLGLSFK   28 (131)
T ss_dssp             EEEES---HHHHHHHHHHHH--HTT--EE
T ss_pred             EeeECCCccHHHHHHHHHHH--HcCCcee
Confidence            67999999999999999998  6666664

AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.

>PRK08533 flagellar accessory protein FlaH; Reviewed

Probab=97.40  E-value=0.0014  Score=48.74  Aligned_cols=50  Identities=10%  Similarity=0.149  Sum_probs=32.6

Q ss_pred             CCceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCCCCCHHHHHHHH
Q 045087           63 PQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPYTCYADQILDII  116 (157)
Q Consensus        63 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~l~~i  116 (157)
                      +...++.|.|.+|+||||+|.+++.. -.+.. ...++++...  +..+++..+
T Consensus        22 ~~g~~~~i~G~~G~GKTtl~~~~~~~-~~~~g-~~~~yi~~e~--~~~~~~~~~   71 (230)
T PRK08533         22 PAGSLILIEGDESTGKSILSQRLAYG-FLQNG-YSVSYVSTQL--TTTEFIKQM   71 (230)
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHH-HHhCC-CcEEEEeCCC--CHHHHHHHH
Confidence            44569999999999999998655442 22222 3456666433  556666665

>PRK03839 putative kinase; Provisional

Probab=97.39  E-value=0.00013  Score=51.97  Aligned_cols=22  Identities=18%  Similarity=0.219  Sum_probs=19.8

Q ss_pred             EEEEEeCCCCcHHHHHHHHhcC
Q 045087           67 AVTILDSIGLDKTAFAAEAYSS   88 (157)
Q Consensus        67 vi~I~G~gGiGKTtLa~~v~~~   88 (157)
                      .|.|+|++|+||||+++.+++.
T Consensus         2 ~I~l~G~pGsGKsT~~~~La~~   23 (180)
T PRK03839          2 IIAITGTPGVGKTTVSKLLAEK   23 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4789999999999999999883

>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]

Probab=97.39  E-value=0.00027  Score=60.55  Aligned_cols=45  Identities=16%  Similarity=0.268  Sum_probs=37.2

Q ss_pred             CCCccccHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087           41 SRDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        41 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      -..++||+++++++++.|.....+-++  ++|.+|+|||+++.-++.
T Consensus       169 lDPvIGRd~EI~r~iqIL~RR~KNNPv--LiGEpGVGKTAIvEGLA~  213 (786)
T COG0542         169 LDPVIGRDEEIRRTIQILSRRTKNNPV--LVGEPGVGKTAIVEGLAQ  213 (786)
T ss_pred             CCCCcChHHHHHHHHHHHhccCCCCCe--EecCCCCCHHHHHHHHHH
Confidence            367899999999999999876544444  579999999999877766

>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=97.39  E-value=0.00023  Score=49.76  Aligned_cols=88  Identities=11%  Similarity=-0.021  Sum_probs=47.3

Q ss_pred             ceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEE-------cCC--CCCHHH---HH---HHHHHHhCCCCCCcc-
Q 045087           65 LSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQ-------EPY--TCYADQ---IL---DIIIKFLMPSSRLSE-  128 (157)
Q Consensus        65 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~-------~~~--~~~~~~---~l---~~i~~~l~~~~~~~~-  128 (157)
                      ..+|-++|.+|.||||||+++.+  ++...-....++.       ++.  .++.++   -+   ..++..+..+....- 
T Consensus         2 g~vIwltGlsGsGKtTlA~~L~~--~L~~~g~~~~~LDgD~lR~~l~~dl~fs~~dR~e~~rr~~~~A~ll~~~G~ivIv   79 (156)
T PF01583_consen    2 GFVIWLTGLSGSGKTTLARALER--RLFARGIKVYLLDGDNLRHGLNADLGFSKEDREENIRRIAEVAKLLADQGIIVIV   79 (156)
T ss_dssp             -EEEEEESSTTSSHHHHHHHHHH--HHHHTTS-EEEEEHHHHCTTTTTT--SSHHHHHHHHHHHHHHHHHHHHTTSEEEE
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH--HHHHcCCcEEEecCcchhhccCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCeEEE
Confidence            35788999999999999999998  6655544455553       222  234322   22   222222222211000 


Q ss_pred             cccccHHHHHHHHHHHhcCCcEEEEe
Q 045087          129 IKDKNYEMKKIILHEYLMTKRYLIVI  154 (157)
Q Consensus       129 ~~~~~~~~~~~~l~~~L~~kr~LlVl  154 (157)
                      ....+..+..+..++.+...+|+-|.
T Consensus        80 a~isp~~~~R~~~R~~~~~~~f~eVy  105 (156)
T PF01583_consen   80 AFISPYREDREWARELIPNERFIEVY  105 (156)
T ss_dssp             E----SHHHHHHHHHHHHTTEEEEEE
T ss_pred             eeccCchHHHHHHHHhCCcCceEEEE
Confidence            11233466777777777766777664

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....

>PRK14948 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.39  E-value=0.002  Score=54.58  Aligned_cols=47  Identities=23%  Similarity=0.136  Sum_probs=39.1

Q ss_pred             CCCccccHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhcC
Q 045087           41 SRDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSS   88 (157)
Q Consensus        41 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~   88 (157)
                      ...++|.+..++.|.+++..+. -.+.+.++|..|+||||+|+.++..
T Consensus        15 f~~liGq~~i~~~L~~~l~~~r-l~~a~Lf~Gp~G~GKttlA~~lAk~   61 (620)
T PRK14948         15 FDELVGQEAIATTLKNALISNR-IAPAYLFTGPRGTGKTSSARILAKS   61 (620)
T ss_pred             HhhccChHHHHHHHHHHHHcCC-CCceEEEECCCCCChHHHHHHHHHH
Confidence            4578999999999999987753 2356788999999999999999773

>PHA02244 ATPase-like protein

Probab=97.39  E-value=0.00036  Score=55.21  Aligned_cols=43  Identities=9%  Similarity=0.173  Sum_probs=29.3

Q ss_pred             CCCccccHHHHH----HHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087           41 SRDTVGLDDRME----ELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        41 ~~~~vGr~~~~~----~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      +..++|......    .+..++..+    ..+.|+|.+|+|||+||+++++
T Consensus        95 d~~~ig~sp~~~~~~~ri~r~l~~~----~PVLL~GppGtGKTtLA~aLA~  141 (383)
T PHA02244         95 DTTKIASNPTFHYETADIAKIVNAN----IPVFLKGGAGSGKNHIAEQIAE  141 (383)
T ss_pred             CCcccCCCHHHHHHHHHHHHHHhcC----CCEEEECCCCCCHHHHHHHHHH
Confidence            345666544443    444444333    3577899999999999999988

>PRK13765 ATP-dependent protease Lon; Provisional

Probab=97.38  E-value=0.00053  Score=58.04  Aligned_cols=76  Identities=9%  Similarity=-0.000  Sum_probs=57.5

Q ss_pred             CCCCccccHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhcCcccc-cccCeeEEEEcCCCCCHHHHHHHHHH
Q 045087           40 KSRDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSSNYMK-HYFDCHAWVQEPYTCYADQILDIIIK  118 (157)
Q Consensus        40 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~F~~~~wv~~~~~~~~~~~l~~i~~  118 (157)
                      ..+.++|.++.++.|...+...    +.+.++|.+|+||||+|+.+.+  .+. .+|+...|..- ...+...++..++.
T Consensus        29 ~~~~vigq~~a~~~L~~~~~~~----~~~l~~G~~G~GKttla~~l~~--~l~~~~~~~~~~~~n-p~~~~~~~~~~v~~  101 (637)
T PRK13765         29 LIDQVIGQEHAVEVIKKAAKQR----RHVMMIGSPGTGKSMLAKAMAE--LLPKEELQDILVYPN-PEDPNNPKIRTVPA  101 (637)
T ss_pred             cHHHcCChHHHHHHHHHHHHhC----CeEEEECCCCCcHHHHHHHHHH--HcChHhHHHheEeeC-CCcchHHHHHHHHH
Confidence            3467899999999888877654    3688999999999999999987  333 33566777665 44477888888887


Q ss_pred             HhCC
Q 045087          119 FLMP  122 (157)
Q Consensus       119 ~l~~  122 (157)
                      +++.
T Consensus       102 ~~G~  105 (637)
T PRK13765        102 GKGK  105 (637)
T ss_pred             hcCH
Confidence            6654

>COG0714 MoxR-like ATPases [General function prediction only]

Probab=97.38  E-value=0.0006  Score=53.26  Aligned_cols=69  Identities=19%  Similarity=0.135  Sum_probs=49.8

Q ss_pred             CCccccHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCCCCCHHHHHHHHHHH
Q 045087           42 RDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPYTCYADQILDIIIKF  119 (157)
Q Consensus        42 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~l~~i~~~  119 (157)
                      ..++|.++.+..+...+..+.    .+.+.|.+|+|||+||+.+..  ....   ...++.+.....+.+++....-.
T Consensus        24 ~~~~g~~~~~~~~l~a~~~~~----~vll~G~PG~gKT~la~~lA~--~l~~---~~~~i~~t~~l~p~d~~G~~~~~   92 (329)
T COG0714          24 KVVVGDEEVIELALLALLAGG----HVLLEGPPGVGKTLLARALAR--ALGL---PFVRIQCTPDLLPSDLLGTYAYA   92 (329)
T ss_pred             CeeeccHHHHHHHHHHHHcCC----CEEEECCCCccHHHHHHHHHH--HhCC---CeEEEecCCCCCHHHhcCchhHh
Confidence            448888888888777776653    688999999999999999988  4432   34566667667777665554433

>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.38  E-value=0.0028  Score=50.87  Aligned_cols=24  Identities=17%  Similarity=0.311  Sum_probs=21.3

Q ss_pred             CceEEEEEeCCCCcHHHHHHHHhc
Q 045087           64 QLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        64 ~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      +.++|+++|.+|+||||++..++.
T Consensus       240 ~~~vI~LVGptGvGKTTTiaKLA~  263 (436)
T PRK11889        240 EVQTIALIGPTGVGKTTTLAKMAW  263 (436)
T ss_pred             CCcEEEEECCCCCcHHHHHHHHHH
Confidence            357999999999999999988875

>TIGR00554 panK_bact pantothenate kinase, bacterial type

Probab=97.38  E-value=0.0016  Score=50.05  Aligned_cols=25  Identities=16%  Similarity=0.110  Sum_probs=21.4

Q ss_pred             CCceEEEEEeCCCCcHHHHHHHHhc
Q 045087           63 PQLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        63 ~~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ....+|+|.|..|+||||+|+.+..
T Consensus        60 ~~p~IIGIaG~~GSGKSTlar~L~~   84 (290)
T TIGR00554        60 KIPYIISIAGSVAVGKSTTARILQA   84 (290)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHH
Confidence            3568999999999999999987654

Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.

>PRK06547 hypothetical protein; Provisional

Probab=97.38  E-value=0.00033  Score=49.86  Aligned_cols=26  Identities=23%  Similarity=0.162  Sum_probs=22.8

Q ss_pred             CCceEEEEEeCCCCcHHHHHHHHhcC
Q 045087           63 PQLSAVTILDSIGLDKTAFAAEAYSS   88 (157)
Q Consensus        63 ~~~~vi~I~G~gGiGKTtLa~~v~~~   88 (157)
                      ....+|+|.|.+|+||||+|+.+.+.
T Consensus        13 ~~~~~i~i~G~~GsGKTt~a~~l~~~   38 (172)
T PRK06547         13 GGMITVLIDGRSGSGKTTLAGALAAR   38 (172)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            35789999999999999999999773

>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily

Probab=97.37  E-value=0.00017  Score=51.37  Aligned_cols=24  Identities=13%  Similarity=0.122  Sum_probs=21.6

Q ss_pred             CceEEEEEeCCCCcHHHHHHHHhc
Q 045087           64 QLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        64 ~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      +.+++.|+|++|+||||+|+.+..
T Consensus         2 ~~~ii~i~G~~GsGKsTl~~~l~~   25 (188)
T TIGR01360         2 KCKIIFIVGGPGSGKGTQCEKIVE   25 (188)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            467899999999999999998876

Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.

>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI

Probab=97.36  E-value=0.00077  Score=54.35  Aligned_cols=90  Identities=12%  Similarity=0.085  Sum_probs=49.9

Q ss_pred             CceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCC-CCCHHHHHHHHHHHhCCCCCC---cccccccHHH---
Q 045087           64 QLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPY-TCYADQILDIIIKFLMPSSRL---SEIKDKNYEM---  136 (157)
Q Consensus        64 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~-~~~~~~~l~~i~~~l~~~~~~---~~~~~~~~~~---  136 (157)
                      +...++|.|..|+|||||+..+...  .+.  +..+.+.++. .....+++...+..-......   ...+......   
T Consensus       139 ~Gq~i~I~G~sG~GKTtLl~~I~~~--~~~--~~gvi~~iGer~~ev~~~~~~~l~~~~~~~tvvv~atsd~~~~~r~~a  214 (418)
T TIGR03498       139 RGQRLGIFAGSGVGKSTLLSMLARN--TDA--DVVVIALVGERGREVREFLEDDLGEEGLKRSVVVVATSDESPLMRRQA  214 (418)
T ss_pred             CCcEEEEECCCCCChHHHHHHHhCC--CCC--CEEEEEEEeeechHHHHHHHHhhhccccceeEEEEECCCCCHHHHHHH
Confidence            3468999999999999999988873  221  2233333333 334555665544432211100   0011222222   


Q ss_pred             --HHHHHHHHh--cCCcEEEEeeCC
Q 045087          137 --KKIILHEYL--MTKRYLIVIDDV  157 (157)
Q Consensus       137 --~~~~l~~~L--~~kr~LlVlDdV  157 (157)
                        ....+.+++  +++.+||++||+
T Consensus       215 ~~~a~~iAEyfrd~G~~Vll~~Dsl  239 (418)
T TIGR03498       215 AYTATAIAEYFRDQGKDVLLLMDSV  239 (418)
T ss_pred             HHHHHHHHHHHHHcCCCEEEeccch
Confidence              222345555  588999999985

Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.

>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []

Probab=97.36  E-value=0.00063  Score=51.82  Aligned_cols=22  Identities=18%  Similarity=0.001  Sum_probs=17.5

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhc
Q 045087           66 SAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        66 ~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      +.|.|+|.||+||||+|+.+..
T Consensus         2 pLiil~G~P~SGKTt~a~~L~~   23 (270)
T PF08433_consen    2 PLIILCGLPCSGKTTRAKELKK   23 (270)
T ss_dssp             -EEEEE--TTSSHHHHHHHHHH
T ss_pred             EEEEEEcCCCCcHHHHHHHHHH
Confidence            5788999999999999998877

The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.

>PRK09099 type III secretion system ATPase; Provisional

Probab=97.36  E-value=0.0012  Score=53.66  Aligned_cols=90  Identities=12%  Similarity=0.140  Sum_probs=50.4

Q ss_pred             CceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcC-CCCCHHHHHHHHHHHhCCCCCC---cccccccHH----
Q 045087           64 QLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEP-YTCYADQILDIIIKFLMPSSRL---SEIKDKNYE----  135 (157)
Q Consensus        64 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~-~~~~~~~~l~~i~~~l~~~~~~---~~~~~~~~~----  135 (157)
                      +...++|.|..|+|||||++.+......    +..++..++ +.....++.+.+...-......   ...+.....    
T Consensus       162 ~Gq~~~I~G~sG~GKTtLl~~ia~~~~~----d~~vi~~iGer~~ev~ef~~~~~~~~~l~rtvvv~~tsd~p~~~r~~a  237 (441)
T PRK09099        162 EGQRMGIFAPAGVGKSTLMGMFARGTQC----DVNVIALIGERGREVREFIELILGEDGMARSVVVCATSDRSSIERAKA  237 (441)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCC----CeEEEEEEccChHHHHHHHHHHhhcCCcceEEEEEECCCCCHHHHHHH
Confidence            4568999999999999999999873221    233333444 3344556666665432111100   001111111    


Q ss_pred             -HHHHHHHHHh--cCCcEEEEeeCC
Q 045087          136 -MKKIILHEYL--MTKRYLIVIDDV  157 (157)
Q Consensus       136 -~~~~~l~~~L--~~kr~LlVlDdV  157 (157)
                       ...-.+.+++  +++.+||++||+
T Consensus       238 ~~~a~tiAEyfrd~G~~VLl~~Dsl  262 (441)
T PRK09099        238 AYVATAIAEYFRDRGLRVLLMMDSL  262 (441)
T ss_pred             HHHHHHHHHHHHHcCCCEEEeccch
Confidence             2222344454  588999999985

>PRK09280 F0F1 ATP synthase subunit beta; Validated

Probab=97.36  E-value=0.0012  Score=53.72  Aligned_cols=93  Identities=10%  Similarity=0.143  Sum_probs=55.2

Q ss_pred             CceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCCCC-CHHHHHHHHHHHhCCCCCC---cccccccHH----
Q 045087           64 QLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPYTC-YADQILDIIIKFLMPSSRL---SEIKDKNYE----  135 (157)
Q Consensus        64 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~-~~~~~l~~i~~~l~~~~~~---~~~~~~~~~----  135 (157)
                      +...++|.|.+|+|||||+..+....... +=..++++.++... ...++++.+...=......   ...+.....    
T Consensus       143 kGQR~gIfa~~GvGKt~Ll~~i~~~~~~~-~~~v~V~~liGER~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~a  221 (463)
T PRK09280        143 KGGKIGLFGGAGVGKTVLIQELINNIAKE-HGGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARLRV  221 (463)
T ss_pred             cCCEEEeecCCCCChhHHHHHHHHHHHhc-CCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHH
Confidence            45679999999999999998876632211 11356677776554 4567777776532111100   001122222    


Q ss_pred             -HHHHHHHHHh---cCCcEEEEeeCC
Q 045087          136 -MKKIILHEYL---MTKRYLIVIDDV  157 (157)
Q Consensus       136 -~~~~~l~~~L---~~kr~LlVlDdV  157 (157)
                       ...-.+.+++   +++.+||++||+
T Consensus       222 ~~~a~tiAEyfrd~~G~~VLll~Dsl  247 (463)
T PRK09280        222 ALTGLTMAEYFRDVEGQDVLLFIDNI  247 (463)
T ss_pred             HHHHHHHHHHHHHhcCCceEEEecch
Confidence             2233466666   678999999985

>PRK12727 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.35  E-value=0.0015  Score=54.01  Aligned_cols=24  Identities=17%  Similarity=0.210  Sum_probs=21.2

Q ss_pred             CceEEEEEeCCCCcHHHHHHHHhc
Q 045087           64 QLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        64 ~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ...+++|+|.+|+||||++..+..
T Consensus       349 ~G~vIaLVGPtGvGKTTtaakLAa  372 (559)
T PRK12727        349 RGGVIALVGPTGAGKTTTIAKLAQ  372 (559)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHH
Confidence            457999999999999999988866

>TIGR01425 SRP54_euk signal recognition particle protein SRP54

Probab=97.34  E-value=0.0022  Score=51.88  Aligned_cols=24  Identities=13%  Similarity=0.113  Sum_probs=21.2

Q ss_pred             CceEEEEEeCCCCcHHHHHHHHhc
Q 045087           64 QLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        64 ~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ...+|.++|.+|+||||++..++.
T Consensus        99 ~~~vi~lvG~~GvGKTTtaaKLA~  122 (429)
T TIGR01425        99 KQNVIMFVGLQGSGKTTTCTKLAY  122 (429)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            367999999999999999988865

This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.

>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta

Probab=97.34  E-value=0.00079  Score=54.64  Aligned_cols=93  Identities=11%  Similarity=0.203  Sum_probs=57.0

Q ss_pred             CceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCCCC-CHHHHHHHHHHHhCCCCCC---cccccccHH----
Q 045087           64 QLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPYTC-YADQILDIIIKFLMPSSRL---SEIKDKNYE----  135 (157)
Q Consensus        64 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~-~~~~~l~~i~~~l~~~~~~---~~~~~~~~~----  135 (157)
                      +...++|.|.+|+|||+|+..+..+.. +.+-+.++|+.++... ...++++.+...-......   ...+.....    
T Consensus       137 kGQr~~Ifg~~G~GKt~l~~~~~~~~~-~~~~~v~V~~~iGeR~rEv~e~~~~~~~~~~l~rtvvv~~ts~~~~~~r~~~  215 (449)
T TIGR03305       137 RGGKAGLFGGAGVGKTVLLTEMIHNMV-GQHQGVSIFCGIGERCREGEELYREMKEAGVLDNTVMVFGQMNEPPGARFRV  215 (449)
T ss_pred             cCCEEEeecCCCCChhHHHHHHHHHHH-hcCCCEEEEEEeccCcHHHHHHHHHHhhccccceEEEEEeCCCCCHHHHHHH
Confidence            456789999999999999988877422 2334678888887655 3566777765432111100   001111112    


Q ss_pred             -HHHHHHHHHhc---CCcEEEEeeCC
Q 045087          136 -MKKIILHEYLM---TKRYLIVIDDV  157 (157)
Q Consensus       136 -~~~~~l~~~L~---~kr~LlVlDdV  157 (157)
                       ...-.+.++++   ++.+||++||+
T Consensus       216 ~~~a~tiAEyfrd~~G~~VLl~~Dsl  241 (449)
T TIGR03305       216 GHTALTMAEYFRDDEKQDVLLLIDNI  241 (449)
T ss_pred             HHHHHHHHHHHHHhcCCceEEEecCh
Confidence             22344556664   58999999985

A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.

>cd01131 PilT Pilus retraction ATPase PilT

Probab=97.34  E-value=0.00029  Score=51.10  Aligned_cols=22  Identities=18%  Similarity=0.169  Sum_probs=19.6

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhc
Q 045087           66 SAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        66 ~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      .++.|+|..|.||||++..+..
T Consensus         2 GlilI~GptGSGKTTll~~ll~   23 (198)
T cd01131           2 GLVLVTGPTGSGKSTTLAAMID   23 (198)
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            4789999999999999988766

PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.

>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=97.33  E-value=0.00043  Score=51.02  Aligned_cols=50  Identities=12%  Similarity=0.110  Sum_probs=35.7

Q ss_pred             ceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCCCC-CHHHHHHHHHH
Q 045087           65 LSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPYTC-YADQILDIIIK  118 (157)
Q Consensus        65 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~-~~~~~l~~i~~  118 (157)
                      -..++|.|.+|+|||+|+..+.++  ..  -+..+++.+++.. ...++++.+..
T Consensus        15 Gqr~~I~g~~g~GKt~Ll~~i~~~--~~--~d~~V~~~iGer~~Ev~~~~~~~~~   65 (215)
T PF00006_consen   15 GQRIGIFGGAGVGKTVLLQEIANN--QD--ADVVVYALIGERGREVTEFIEELKG   65 (215)
T ss_dssp             TSEEEEEESTTSSHHHHHHHHHHH--CT--TTEEEEEEESECHHHHHHHHHHHHH
T ss_pred             CCEEEEEcCcccccchhhHHHHhc--cc--ccceeeeeccccchhHHHHHHHHhh
Confidence            357899999999999999988873  22  2334788887653 45666666644

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....

>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+)

Probab=97.33  E-value=0.00047  Score=49.70  Aligned_cols=22  Identities=23%  Similarity=0.046  Sum_probs=19.8

Q ss_pred             EEEEEeCCCCcHHHHHHHHhcC
Q 045087           67 AVTILDSIGLDKTAFAAEAYSS   88 (157)
Q Consensus        67 vi~I~G~gGiGKTtLa~~v~~~   88 (157)
                      +|+|.|.+|+||||+|+.+...
T Consensus         1 ii~i~G~sgsGKTtla~~l~~~   22 (187)
T cd02024           1 IVGISGVTNSGKTTLAKLLQRI   22 (187)
T ss_pred             CEEEECCCCCCHHHHHHHHHHH
Confidence            4789999999999999999873

This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.

>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=97.32  E-value=0.00019  Score=59.80  Aligned_cols=52  Identities=21%  Similarity=0.126  Sum_probs=35.0

Q ss_pred             CCccccHHHHHHHHHHHhcC-----------CCCceEEEEEeCCCCcHHHHHHHHhcCccccccc
Q 045087           42 RDTVGLDDRMEELLDLLIEG-----------PPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYF   95 (157)
Q Consensus        42 ~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F   95 (157)
                      .++=|.++-..+|...+...           -....=|.+||++|+|||-||++|++  +.+-.|
T Consensus       511 ~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVAN--Eag~NF  573 (802)
T KOG0733|consen  511 DDIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVAN--EAGANF  573 (802)
T ss_pred             hhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhh--hccCce
Confidence            34445565566665554432           12345678999999999999999999  555454

>PRK00131 aroK shikimate kinase; Reviewed

Probab=97.31  E-value=0.00021  Score=50.15  Aligned_cols=23  Identities=9%  Similarity=0.144  Sum_probs=21.0

Q ss_pred             ceEEEEEeCCCCcHHHHHHHHhc
Q 045087           65 LSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        65 ~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ...|.++|++|+||||+|+.+..
T Consensus         4 ~~~i~l~G~~GsGKstla~~La~   26 (175)
T PRK00131          4 GPNIVLIGFMGAGKSTIGRLLAK   26 (175)
T ss_pred             CCeEEEEcCCCCCHHHHHHHHHH
Confidence            45889999999999999999988

>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=97.31  E-value=0.0018  Score=52.42  Aligned_cols=23  Identities=22%  Similarity=0.252  Sum_probs=20.0

Q ss_pred             ceEEEEEeCCCCcHHHHHHHHhc
Q 045087           65 LSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        65 ~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      .+++.++|++|+||||++..+..
T Consensus       221 ~~~i~~vGptGvGKTTt~~kLA~  243 (424)
T PRK05703        221 GGVVALVGPTGVGKTTTLAKLAA  243 (424)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999998877765

>PRK12724 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.31  E-value=0.00094  Score=53.80  Aligned_cols=23  Identities=22%  Similarity=0.154  Sum_probs=20.5

Q ss_pred             ceEEEEEeCCCCcHHHHHHHHhc
Q 045087           65 LSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        65 ~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ..++.++|.+|+||||++..+..
T Consensus       223 ~~vi~lvGptGvGKTTtaaKLA~  245 (432)
T PRK12724        223 RKVVFFVGPTGSGKTTSIAKLAA  245 (432)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999988875

>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]

Probab=97.31  E-value=0.00027  Score=54.13  Aligned_cols=64  Identities=16%  Similarity=0.034  Sum_probs=40.8

Q ss_pred             HHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCCCCCHHHHHH
Q 045087           51 MEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPYTCYADQILD  114 (157)
Q Consensus        51 ~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~l~  114 (157)
                      -.+|...+.....+..+|+|+|.||+|||||..++-....-+.+=-.++-|.-+++++--.++.
T Consensus        37 a~~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLG  100 (323)
T COG1703          37 ARELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILG  100 (323)
T ss_pred             HHHHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccc
Confidence            3567777777777889999999999999999988866221111111233344455555444443

>PRK12723 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.31  E-value=0.0043  Score=49.66  Aligned_cols=24  Identities=17%  Similarity=0.230  Sum_probs=21.0

Q ss_pred             CceEEEEEeCCCCcHHHHHHHHhc
Q 045087           64 QLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        64 ~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ...++.++|..|+||||.+..+..
T Consensus       173 ~~~vi~lvGptGvGKTTT~aKLA~  196 (388)
T PRK12723        173 KKRVFILVGPTGVGKTTTIAKLAA  196 (388)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            357999999999999999988876

>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars

Probab=97.31  E-value=0.00018  Score=43.25  Aligned_cols=21  Identities=19%  Similarity=0.229  Sum_probs=19.0

Q ss_pred             EEEEEeCCCCcHHHHHHHHhc
Q 045087           67 AVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        67 vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ++.|.|.+|+||||+++.+.+
T Consensus         1 ~i~i~G~~gsGKst~~~~l~~   21 (69)
T cd02019           1 IIAITGGSGSGKSTVAKKLAE   21 (69)
T ss_pred             CEEEECCCCCCHHHHHHHHHH
Confidence            478899999999999998887

Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.

>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional

Probab=97.31  E-value=0.0024  Score=49.09  Aligned_cols=31  Identities=19%  Similarity=0.237  Sum_probs=25.8

Q ss_pred             CCceEEEEEeCCCCcHHHHHHHHhcCccccccc
Q 045087           63 PQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYF   95 (157)
Q Consensus        63 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F   95 (157)
                      .+..++.|+|.+|.|||||...+.+  .+...+
T Consensus       102 ~~~~~v~l~G~pGsGKTTLl~~l~~--~l~~~~  132 (290)
T PRK10463        102 RKQLVLNLVSSPGSGKTTLLTETLM--RLKDSV  132 (290)
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHH--HhccCC
Confidence            4688999999999999999999988  444444

>PRK14738 gmk guanylate kinase; Provisional

Probab=97.30  E-value=0.00025  Score=51.79  Aligned_cols=31  Identities=26%  Similarity=0.275  Sum_probs=25.5

Q ss_pred             HHhcCCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087           57 LLIEGPPQLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        57 ~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      |+..+......+.|+|++|+|||||+..+..
T Consensus         5 ~~~~~~~~~~~ivi~GpsG~GK~tl~~~L~~   35 (206)
T PRK14738          5 WLFNKPAKPLLVVISGPSGVGKDAVLARMRE   35 (206)
T ss_pred             cccCCCCCCeEEEEECcCCCCHHHHHHHHHh
Confidence            4445555678999999999999999999875

>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components

Probab=97.30  E-value=0.00026  Score=53.26  Aligned_cols=38  Identities=18%  Similarity=0.197  Sum_probs=29.2

Q ss_pred             HHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087           50 RMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        50 ~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      +..+|...+.....+..+|+|+|.||+|||||..++..
T Consensus        14 ~~~~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~   51 (266)
T PF03308_consen   14 EARELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIR   51 (266)
T ss_dssp             HHHHHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHH
Confidence            44566666766556789999999999999999988866

In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.

>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]

Probab=97.29  E-value=0.00078  Score=57.85  Aligned_cols=46  Identities=20%  Similarity=0.349  Sum_probs=36.6

Q ss_pred             CCccccHHHHHHHHHHHhcC-------CCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087           42 RDTVGLDDRMEELLDLLIEG-------PPQLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        42 ~~~vGr~~~~~~l~~~L~~~-------~~~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ..++|.+..++.+.+.+...       ..........|+.|||||-||+++..
T Consensus       491 ~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~  543 (786)
T COG0542         491 KRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAE  543 (786)
T ss_pred             cceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHH
Confidence            67999999999998887531       22345666789999999999998877

>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal

Probab=97.29  E-value=0.00064  Score=50.95  Aligned_cols=21  Identities=19%  Similarity=0.319  Sum_probs=18.8

Q ss_pred             EEEEEeCCCCcHHHHHHHHhc
Q 045087           67 AVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        67 vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      .|.++|++|+||||+|+.+..
T Consensus         1 LIvl~G~pGSGKST~a~~La~   21 (249)
T TIGR03574         1 LIILTGLPGVGKSTFSKELAK   21 (249)
T ss_pred             CEEEEcCCCCCHHHHHHHHHH
Confidence            367899999999999998876

Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.

>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX

Probab=97.29  E-value=0.00063  Score=49.66  Aligned_cols=43  Identities=23%  Similarity=0.225  Sum_probs=32.6

Q ss_pred             CCCccccHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087           41 SRDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        41 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      -++++|.+.....|+-.....    .-+.++|.+|+|||++|+.+-.
T Consensus         2 f~dI~GQe~aKrAL~iAAaG~----h~lLl~GppGtGKTmlA~~l~~   44 (206)
T PF01078_consen    2 FSDIVGQEEAKRALEIAAAGG----HHLLLIGPPGTGKTMLARRLPS   44 (206)
T ss_dssp             TCCSSSTHHHHHHHHHHHHCC------EEEES-CCCTHHHHHHHHHH
T ss_pred             hhhhcCcHHHHHHHHHHHcCC----CCeEEECCCCCCHHHHHHHHHH
Confidence            357899998888887665543    4789999999999999998843

This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.

>PRK14971 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.29  E-value=0.0027  Score=53.76  Aligned_cols=46  Identities=17%  Similarity=0.102  Sum_probs=38.0

Q ss_pred             CCCccccHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087           41 SRDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        41 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ..+++|.+..++.|.+++..+. -...+.++|..|+||||+|+.+..
T Consensus        16 f~~viGq~~~~~~L~~~i~~~~-l~hayLf~Gp~G~GKtt~A~~lAk   61 (614)
T PRK14971         16 FESVVGQEALTTTLKNAIATNK-LAHAYLFCGPRGVGKTTCARIFAK   61 (614)
T ss_pred             HHHhcCcHHHHHHHHHHHHcCC-CCeeEEEECCCCCCHHHHHHHHHH
Confidence            4678999999999999987653 234578999999999999988765

>PRK06620 hypothetical protein; Validated

Probab=97.29  E-value=0.00073  Score=49.73  Aligned_cols=49  Identities=10%  Similarity=-0.117  Sum_probs=31.5

Q ss_pred             CCCCcccc--HHHHHHHHHHHhcCCCC--ceEEEEEeCCCCcHHHHHHHHhcC
Q 045087           40 KSRDTVGL--DDRMEELLDLLIEGPPQ--LSAVTILDSIGLDKTAFAAEAYSS   88 (157)
Q Consensus        40 ~~~~~vGr--~~~~~~l~~~L~~~~~~--~~vi~I~G~gGiGKTtLa~~v~~~   88 (157)
                      -++.++|-  +..+..+.+|-.....+  ...+.|||++|+|||+|++.+++.
T Consensus        15 fd~Fvvg~~N~~a~~~~~~~~~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~   67 (214)
T PRK06620         15 PDEFIVSSSNDQAYNIIKNWQCGFGVNPYKFTLLIKGPSSSGKTYLTKIWQNL   67 (214)
T ss_pred             chhhEecccHHHHHHHHHHHHHccccCCCcceEEEECCCCCCHHHHHHHHHhc
Confidence            34456665  23445555554321111  256899999999999999988774

>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes

Probab=97.28  E-value=0.0018  Score=49.27  Aligned_cols=21  Identities=14%  Similarity=0.140  Sum_probs=19.1

Q ss_pred             EEEEEeCCCCcHHHHHHHHhc
Q 045087           67 AVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        67 vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      +|+|.|.+|+||||+++++.+
T Consensus         1 IIgItG~SGSGKTTv~~~l~~   21 (277)
T cd02029           1 VIAVTGSSGAGTTTVKRAFEH   21 (277)
T ss_pred             CEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999998876

PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.

>PRK09302 circadian clock protein KaiC; Reviewed

Probab=97.28  E-value=0.0024  Score=52.84  Aligned_cols=102  Identities=15%  Similarity=0.072  Sum_probs=60.6

Q ss_pred             HHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCCCCCHHHHHHHHHHHhCCCCC-----
Q 045087           51 MEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPYTCYADQILDIIIKFLMPSSR-----  125 (157)
Q Consensus        51 ~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~l~~i~~~l~~~~~-----  125 (157)
                      +..|-++|..+-....++.|.|.+|+|||++|..+..+  ....-..++|++...+  ..++...+ ..++.+..     
T Consensus       259 i~~lD~~l~GG~~~g~~~li~G~~G~GKT~l~~~~~~~--~~~~g~~~~yis~e~~--~~~i~~~~-~~~g~~~~~~~~~  333 (509)
T PRK09302        259 VPDLDEMLGGGFFRGSIILVSGATGTGKTLLASKFAEA--ACRRGERCLLFAFEES--RAQLIRNA-RSWGIDLEKMEEK  333 (509)
T ss_pred             cHHHHHhhcCCCCCCcEEEEEcCCCCCHHHHHHHHHHH--HHhCCCcEEEEEecCC--HHHHHHHH-HHcCCChHHHhhc
Confidence            45566666444455678999999999999999888762  2233456788887653  55555544 33332100     


Q ss_pred             ----C--cccccccHHHHHHHHHHHhcC-CcEEEEeeCC
Q 045087          126 ----L--SEIKDKNYEMKKIILHEYLMT-KRYLIVIDDV  157 (157)
Q Consensus       126 ----~--~~~~~~~~~~~~~~l~~~L~~-kr~LlVlDdV  157 (157)
                          .  ........++.+..+.+.+.. +.-++|+|.+
T Consensus       334 g~l~i~~~~~~~~~~~~~~~~i~~~i~~~~~~~vVIDsl  372 (509)
T PRK09302        334 GLLKIICARPESYGLEDHLIIIKREIEEFKPSRVAIDPL  372 (509)
T ss_pred             CCceeecCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCH
Confidence                0  001122345566666666643 4457899974

>COG3899 Predicted ATPase [General function prediction only]

Probab=97.28  E-value=0.0011  Score=58.02  Aligned_cols=50  Identities=16%  Similarity=0.185  Sum_probs=40.8

Q ss_pred             CccccHHHHHHHHHHHhcC-CCCceEEEEEeCCCCcHHHHHHHHhcCcccccc
Q 045087           43 DTVGLDDRMEELLDLLIEG-PPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHY   94 (157)
Q Consensus        43 ~~vGr~~~~~~l~~~L~~~-~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~   94 (157)
                      .++||+.+++.|...+..- .....++.+.|.+|+|||+|+++|..  .+.+.
T Consensus         1 ~l~GRe~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~--~i~~~   51 (849)
T COG3899           1 PLYGRETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHK--PITQQ   51 (849)
T ss_pred             CCCchHhHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHHH--HHhcc
Confidence            3789999999999888652 34567999999999999999999988  44443

>PRK06217 hypothetical protein; Validated

Probab=97.28  E-value=0.0007  Score=48.37  Aligned_cols=22  Identities=18%  Similarity=0.208  Sum_probs=20.0

Q ss_pred             EEEEEeCCCCcHHHHHHHHhcC
Q 045087           67 AVTILDSIGLDKTAFAAEAYSS   88 (157)
Q Consensus        67 vi~I~G~gGiGKTtLa~~v~~~   88 (157)
                      .|.|.|.+|.||||+|+++...
T Consensus         3 ~I~i~G~~GsGKSTla~~L~~~   24 (183)
T PRK06217          3 RIHITGASGSGTTTLGAALAER   24 (183)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5889999999999999999874

>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C

Probab=97.26  E-value=0.00053  Score=49.05  Aligned_cols=91  Identities=16%  Similarity=0.058  Sum_probs=46.4

Q ss_pred             ceEEEEEeCCCCcHHHHHHHHhcCccccccc--------CeeEEEEcCCCCCHHHHHHHHHHHhCCCCCCcc--------
Q 045087           65 LSAVTILDSIGLDKTAFAAEAYSSNYMKHYF--------DCHAWVQEPYTCYADQILDIIIKFLMPSSRLSE--------  128 (157)
Q Consensus        65 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F--------~~~~wv~~~~~~~~~~~l~~i~~~l~~~~~~~~--------  128 (157)
                      ..+..|+|.+|+|||+++..+..+......|        ..+.|++...+  ..++...+............        
T Consensus        32 g~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~--~~~~~~rl~~~~~~~~~~~~~~~~~~~~  109 (193)
T PF13481_consen   32 GELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS--ESQIARRLRALLQDYDDDANLFFVDLSN  109 (193)
T ss_dssp             TSEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS---HHHHHHHHHHHHTTS-HHHHHHHHHH--
T ss_pred             CeEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC--HHHHHHHHHHHhcccCCccceEEeeccc
Confidence            3488899999999999998876632222222        25667776665  33333333322221100000        


Q ss_pred             ----------cccccHHHHHHHHHHHhcC--CcEEEEeeCC
Q 045087          129 ----------IKDKNYEMKKIILHEYLMT--KRYLIVIDDV  157 (157)
Q Consensus       129 ----------~~~~~~~~~~~~l~~~L~~--kr~LlVlDdV  157 (157)
                                ............+.+.+..  ..-++|+|++
T Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~lvviD~l  150 (193)
T PF13481_consen  110 WGCIRLFEPDSGGPLLDEDLEELEAALKELYGPDLVVIDPL  150 (193)
T ss_dssp             E-EE---TTS---TTSHHHHHHHHHHHTT----SEEEEE-G
T ss_pred             cccceeeecccccccchHHHHHHHHHHhhcCCCcEEEEcCH
Confidence                      0001124556667777765  3569999974

>PRK05922 type III secretion system ATPase; Validated

Probab=97.26  E-value=0.0023  Score=51.79  Aligned_cols=89  Identities=10%  Similarity=0.097  Sum_probs=50.1

Q ss_pred             ceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCC-CCCHHHHHHHHHHHhCCCCCC---cccccccHH-----
Q 045087           65 LSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPY-TCYADQILDIIIKFLMPSSRL---SEIKDKNYE-----  135 (157)
Q Consensus        65 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~-~~~~~~~l~~i~~~l~~~~~~---~~~~~~~~~-----  135 (157)
                      ...++|+|..|+|||||.+.+...  .  ..+...+..++. .....+++.+...........   ...+.....     
T Consensus       157 GqrigI~G~nG~GKSTLL~~Ia~~--~--~~d~gvi~liGerg~ev~eyl~q~~~~~~~~rTVlv~atsd~~~~~r~~a~  232 (434)
T PRK05922        157 GQRIGVFSEPGSGKSSLLSTIAKG--S--KSTINVIALIGERGREVREYIEQHKEGLAAQRTIIIASPAHETAPTKVIAG  232 (434)
T ss_pred             CcEEEEECCCCCChHHHHHHHhcc--C--CCCceEEEEeCCCCchHHHHHHHHHhhccccceEEEEECCCCCHHHHHHHH
Confidence            457899999999999999999873  2  223344444433 233455665554433222110   001111111     


Q ss_pred             HHHHHHHHHh--cCCcEEEEeeCC
Q 045087          136 MKKIILHEYL--MTKRYLIVIDDV  157 (157)
Q Consensus       136 ~~~~~l~~~L--~~kr~LlVlDdV  157 (157)
                      ...-.+.+++  +++.+||++||+
T Consensus       233 ~~a~tiAEyfrd~G~~VLl~~Dsl  256 (434)
T PRK05922        233 RAAMTIAEYFRDQGHRVLFIMDSL  256 (434)
T ss_pred             HHHHHHHHHHHHcCCCEEEeccch
Confidence            2233344555  589999999986

>PRK08472 fliI flagellum-specific ATP synthase; Validated

Probab=97.26  E-value=0.0018  Score=52.38  Aligned_cols=90  Identities=11%  Similarity=0.082  Sum_probs=47.1

Q ss_pred             CceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCCCCCH-HHHHHHHHHH-hCCCCCC-cccccccHH-----
Q 045087           64 QLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPYTCYA-DQILDIIIKF-LMPSSRL-SEIKDKNYE-----  135 (157)
Q Consensus        64 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~-~~~l~~i~~~-l~~~~~~-~~~~~~~~~-----  135 (157)
                      +...++|.|..|+|||||+..+...  ..  -+..+...++..... .++....+.. +....-. ...+..+..     
T Consensus       156 ~Gq~~~i~G~sG~GKStLl~~i~~~--~~--~~v~vi~~iGergrev~e~~~~~l~~~l~~tvvV~atsddsp~~R~~~~  231 (434)
T PRK08472        156 KGQKLGIFAGSGVGKSTLMGMIVKG--CL--APIKVVALIGERGREIPEFIEKNLGGDLENTVIVVATSDDSPLMRKYGA  231 (434)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhhc--cC--CCEEEEEeeCccchhHHHHHHHHhcCcccceEEEEECCCCCHHHhhHHH
Confidence            3458899999999999999999873  21  234444445544332 3443332221 1000000 000111111     


Q ss_pred             HHHHHHHHHh--cCCcEEEEeeCC
Q 045087          136 MKKIILHEYL--MTKRYLIVIDDV  157 (157)
Q Consensus       136 ~~~~~l~~~L--~~kr~LlVlDdV  157 (157)
                      .....+.+++  +++.+||++||+
T Consensus       232 ~~a~~iAEyFrd~G~~Vll~~Dsl  255 (434)
T PRK08472        232 FCAMSVAEYFKNQGLDVLFIMDSV  255 (434)
T ss_pred             HHHHHHHHHHHHcCCCEEEecccc
Confidence            1122344444  588999999986

>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]

Probab=97.25  E-value=0.00055  Score=56.31  Aligned_cols=53  Identities=25%  Similarity=0.257  Sum_probs=36.5

Q ss_pred             CCCccccHHHHHHHHHHHhc-----------CCCCceEEEEEeCCCCcHHHHHHHHhcCccccccc
Q 045087           41 SRDTVGLDDRMEELLDLLIE-----------GPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYF   95 (157)
Q Consensus        41 ~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F   95 (157)
                      ..++.|.+...+.+.+.+..           +-...+.+.++|++|.|||.||+++++  ....+|
T Consensus       241 ~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~--~~~~~f  304 (494)
T COG0464         241 LDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVAL--ESRSRF  304 (494)
T ss_pred             eehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHh--hCCCeE
Confidence            34566666666655554421           113456888999999999999999999  555555

>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]

Probab=97.25  E-value=0.00066  Score=48.56  Aligned_cols=22  Identities=23%  Similarity=0.303  Sum_probs=19.6

Q ss_pred             EEEEEeCCCCcHHHHHHHHhcC
Q 045087           67 AVTILDSIGLDKTAFAAEAYSS   88 (157)
Q Consensus        67 vi~I~G~gGiGKTtLa~~v~~~   88 (157)
                      .|.|.|.+|.||||+|+.+...
T Consensus         2 riiilG~pGaGK~T~A~~La~~   23 (178)
T COG0563           2 RILILGPPGAGKSTLAKKLAKK   23 (178)
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            4778999999999999999883

>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]

Probab=97.25  E-value=0.0041  Score=47.40  Aligned_cols=46  Identities=20%  Similarity=0.195  Sum_probs=34.9

Q ss_pred             CCccccHHHHHHHHHHHhcC-----------CCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087           42 RDTVGLDDRMEELLDLLIEG-----------PPQLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        42 ~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      +++=|-.+++++|.+.+...           -...+-|.++|++|.|||-+|++|.+
T Consensus       177 ~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravan  233 (435)
T KOG0729|consen  177 SDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVAN  233 (435)
T ss_pred             ccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhc
Confidence            35566778888887765321           13456788999999999999999999

>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=97.24  E-value=0.0011  Score=55.59  Aligned_cols=55  Identities=20%  Similarity=0.109  Sum_probs=40.7

Q ss_pred             CCCCCccccHHHHHHHHHHHhcC-----------CCCceEEEEEeCCCCcHHHHHHHHhcCccccccc
Q 045087           39 SKSRDTVGLDDRMEELLDLLIEG-----------PPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYF   95 (157)
Q Consensus        39 ~~~~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F   95 (157)
                      ...+++=|.++...+|.+.+...           -...+-|..||+||+|||++|+++.+  +.+-.|
T Consensus       431 v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAn--e~~~nF  496 (693)
T KOG0730|consen  431 VSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALAN--EAGMNF  496 (693)
T ss_pred             CChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhh--hhcCCe
Confidence            34466777888888887666432           14567788999999999999999999  444445

>TIGR00041 DTMP_kinase thymidylate kinase

Probab=97.24  E-value=0.0014  Score=47.07  Aligned_cols=22  Identities=23%  Similarity=0.009  Sum_probs=20.5

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhc
Q 045087           66 SAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        66 ~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ..|+|.|..|+||||+++.+.+
T Consensus         4 ~~IvieG~~GsGKsT~~~~L~~   25 (195)
T TIGR00041         4 MFIVIEGIDGAGKTTQANLLKK   25 (195)
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999999987

Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.

>PRK00625 shikimate kinase; Provisional

Probab=97.24  E-value=0.00024  Score=50.62  Aligned_cols=21  Identities=14%  Similarity=0.142  Sum_probs=19.1

Q ss_pred             EEEEEeCCCCcHHHHHHHHhc
Q 045087           67 AVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        67 vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      .|.++||+|+||||+++.+..
T Consensus         2 ~I~LiG~pGsGKTT~~k~La~   22 (173)
T PRK00625          2 QIFLCGLPTVGKTSFGKALAK   22 (173)
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            478999999999999999977

>COG3903 Predicted ATPase [General function prediction only]

Probab=97.23  E-value=0.0003  Score=55.90  Aligned_cols=83  Identities=17%  Similarity=0.111  Sum_probs=56.0

Q ss_pred             CceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCCCCC-HHHHHHHHHHHhCCCCCCcccccccHHHHHHHHH
Q 045087           64 QLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPYTCY-ADQILDIIIKFLMPSSRLSEIKDKNYEMKKIILH  142 (157)
Q Consensus        64 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~-~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~l~  142 (157)
                      ..+.++++|.|||||||++-.+.+   +..-|....|+....+.+ ...+.-.+...++....       +-+.-...+.
T Consensus        13 ~~RlvtL~g~ggvgkttl~~~~a~---~~~~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~~-------~g~~~~~~~~   82 (414)
T COG3903          13 ALRLVTLTGAGGVGKTTLALQAAH---AASEYADGVAFVDLAPITDPALVFPTLAGALGLHVQ-------PGDSAVDTLV   82 (414)
T ss_pred             hhheeeeeccCccceehhhhhhHh---HhhhcccceeeeeccccCchhHhHHHHHhhcccccc-------cchHHHHHHH
Confidence            467999999999999999988877   556676666655555544 44444444444554332       2233455566


Q ss_pred             HHhcCCcEEEEeeC
Q 045087          143 EYLMTKRYLIVIDD  156 (157)
Q Consensus       143 ~~L~~kr~LlVlDd  156 (157)
                      ....++|.++|+||
T Consensus        83 ~~~~~rr~llvldn   96 (414)
T COG3903          83 RRIGDRRALLVLDN   96 (414)
T ss_pred             HHHhhhhHHHHhcC
Confidence            67778889999987

>TIGR01041 ATP_syn_B_arch ATP synthase archaeal, B subunit

Probab=97.22  E-value=0.0012  Score=53.72  Aligned_cols=94  Identities=15%  Similarity=0.121  Sum_probs=55.5

Q ss_pred             CceEEEEEeCCCCcHHHHHHHHhcCccccccc--CeeEEEEcCCCC-CHHHHHHHHHHHhCCCCCC---cccccccHH--
Q 045087           64 QLSAVTILDSIGLDKTAFAAEAYSSNYMKHYF--DCHAWVQEPYTC-YADQILDIIIKFLMPSSRL---SEIKDKNYE--  135 (157)
Q Consensus        64 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F--~~~~wv~~~~~~-~~~~~l~~i~~~l~~~~~~---~~~~~~~~~--  135 (157)
                      +-..++|.|-.|+|||+|+..+.+.......+  -.++++.+++.. ...++++.+...=......   ...+.....  
T Consensus       140 ~GQR~gIfgg~G~GKs~L~~~ia~~~~ad~~~~~~v~V~~~iGERgrEv~efi~~~~~~~~l~rtvvv~atsd~p~~~R~  219 (458)
T TIGR01041       140 RGQKLPIFSGSGLPHNELAAQIARQATVRGEESEFAVVFAAMGITYEEANFFMKDFEETGALERAVVFLNLADDPAVERI  219 (458)
T ss_pred             cCCEEEeeCCCCCCHHHHHHHHHHhhcccCCCCceEEEEEEccccchHHHHHHHHHHhcCCcceEEEEEECCCCCHHHHH
Confidence            34678999999999999999888843322111  156777777654 4567777766432211100   001111112  


Q ss_pred             ---HHHHHHHHHhc---CCcEEEEeeCC
Q 045087          136 ---MKKIILHEYLM---TKRYLIVIDDV  157 (157)
Q Consensus       136 ---~~~~~l~~~L~---~kr~LlVlDdV  157 (157)
                         .....+.++++   ++++||++||+
T Consensus       220 ~a~~~a~tiAEyfr~d~G~~VLli~Dsl  247 (458)
T TIGR01041       220 VTPRMALTAAEYLAFEKDMHVLVILTDM  247 (458)
T ss_pred             HHHHHHHHHHHHHHHccCCcEEEEEcCh
Confidence               22333566665   78899999985

Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.

>PRK12726 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.22  E-value=0.0033  Score=50.17  Aligned_cols=24  Identities=13%  Similarity=0.167  Sum_probs=21.5

Q ss_pred             CceEEEEEeCCCCcHHHHHHHHhc
Q 045087           64 QLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        64 ~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ..+++.++|+.|+||||++..+..
T Consensus       205 ~~~ii~lvGptGvGKTTt~akLA~  228 (407)
T PRK12726        205 NHRIISLIGQTGVGKTTTLVKLGW  228 (407)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            467999999999999999988876

>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases

Probab=97.21  E-value=0.0052  Score=46.45  Aligned_cols=52  Identities=10%  Similarity=-0.040  Sum_probs=33.9

Q ss_pred             CceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCCCCCHHHHHHHHHH
Q 045087           64 QLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPYTCYADQILDIIIK  118 (157)
Q Consensus        64 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~l~~i~~  118 (157)
                      ...++.|.|.+|+||||++..+..+. ...+=..++|+++..  +..++...+..
T Consensus        29 ~g~~~~i~g~~G~GKT~l~~~~~~~~-~~~~g~~vl~iS~E~--~~~~~~~r~~~   80 (271)
T cd01122          29 KGELIILTAGTGVGKTTFLREYALDL-ITQHGVRVGTISLEE--PVVRTARRLLG   80 (271)
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHHH-HHhcCceEEEEEccc--CHHHHHHHHHH
Confidence            45588899999999999998886632 122124577887655  33444444443

Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.

>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]

Probab=97.21  E-value=0.00051  Score=47.64  Aligned_cols=23  Identities=13%  Similarity=0.187  Sum_probs=20.7

Q ss_pred             ceEEEEEeCCCCcHHHHHHHHhc
Q 045087           65 LSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        65 ~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      .+-|.|.|.||+||||||.++..
T Consensus         7 ~PNILvtGTPG~GKstl~~~lae   29 (176)
T KOG3347|consen    7 RPNILVTGTPGTGKSTLAERLAE   29 (176)
T ss_pred             CCCEEEeCCCCCCchhHHHHHHH
Confidence            45688999999999999999886

>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS)

Probab=97.21  E-value=0.0013  Score=45.52  Aligned_cols=21  Identities=14%  Similarity=0.104  Sum_probs=18.9

Q ss_pred             EEEEEeCCCCcHHHHHHHHhc
Q 045087           67 AVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        67 vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ++.|+|.+|.||||+|+.+..
T Consensus         1 ~i~i~G~~GsGKSTla~~L~~   21 (149)
T cd02027           1 VIWLTGLSGSGKSTIARALEE   21 (149)
T ss_pred             CEEEEcCCCCCHHHHHHHHHH
Confidence            477899999999999998877

The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.

>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]

Probab=97.21  E-value=0.0032  Score=52.06  Aligned_cols=48  Identities=23%  Similarity=0.296  Sum_probs=34.7

Q ss_pred             CCCccccHHHHHHHHHH---HhcCC-------CCceEEEEEeCCCCcHHHHHHHHhcC
Q 045087           41 SRDTVGLDDRMEELLDL---LIEGP-------PQLSAVTILDSIGLDKTAFAAEAYSS   88 (157)
Q Consensus        41 ~~~~vGr~~~~~~l~~~---L~~~~-------~~~~vi~I~G~gGiGKTtLa~~v~~~   88 (157)
                      .+++-|-|+..++|++.   |....       .=.+=|.++|++|.|||-||+++...
T Consensus       303 F~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGE  360 (752)
T KOG0734|consen  303 FEDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGE  360 (752)
T ss_pred             cccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcc
Confidence            45678888766665554   43321       22456889999999999999999983

>TIGR01040 V-ATPase_V1_B V-type (H+)-ATPase V1, B subunit

Probab=97.21  E-value=0.0017  Score=52.75  Aligned_cols=94  Identities=15%  Similarity=0.139  Sum_probs=57.0

Q ss_pred             CceEEEEEeCCCCcHHHHHHHHhcCccccc--ccC---------eeEEEEcCCCCCHHHHHHHHHHHhC-CCCCC---cc
Q 045087           64 QLSAVTILDSIGLDKTAFAAEAYSSNYMKH--YFD---------CHAWVQEPYTCYADQILDIIIKFLM-PSSRL---SE  128 (157)
Q Consensus        64 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~--~F~---------~~~wv~~~~~~~~~~~l~~i~~~l~-~~~~~---~~  128 (157)
                      +..-++|.|-+|+|||+|+..+.+..+...  ..+         .+++..++......+++...+..-+ .....   ..
T Consensus       140 ~GQRigIfagsGvGKs~L~~~i~~~~~~~~~~~aD~~~~~~~~~v~V~a~IGerre~~efi~~~l~~~g~l~rtvvv~at  219 (466)
T TIGR01040       140 RGQKIPIFSAAGLPHNEIAAQICRQAGLVKLPTKDVHDGHEDNFAIVFAAMGVNMETARFFKQDFEENGSMERVCLFLNL  219 (466)
T ss_pred             cCCeeeeecCCCCCHHHHHHHHHHhhccccccccccccccCCceEEEEEEeeeehHHHHHHHHHHHhcCCcceEEEEEEC
Confidence            356789999999999999988887433100  011         5677778887666676666665544 11110   00


Q ss_pred             cccccHH-----HHHHHHHHHhc---CCcEEEEeeCC
Q 045087          129 IKDKNYE-----MKKIILHEYLM---TKRYLIVIDDV  157 (157)
Q Consensus       129 ~~~~~~~-----~~~~~l~~~L~---~kr~LlVlDdV  157 (157)
                      .+....+     .....+.++++   ++.+||++||+
T Consensus       220 sd~p~~~R~~a~~~a~tiAEyfr~~~G~~VLl~~Dsl  256 (466)
T TIGR01040       220 ANDPTIERIITPRLALTTAEYLAYQCEKHVLVILTDM  256 (466)
T ss_pred             CCCCHHHHHHHHhhhHHHHHHHHHhcCCcEEEeccCh
Confidence            1111222     22333566665   58999999985

This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.

>PRK13947 shikimate kinase; Provisional

Probab=97.20  E-value=0.00026  Score=49.74  Aligned_cols=21  Identities=14%  Similarity=0.317  Sum_probs=19.3

Q ss_pred             EEEEEeCCCCcHHHHHHHHhc
Q 045087           67 AVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        67 vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      .|.|+|++|+||||+|+.+.+
T Consensus         3 ~I~l~G~~GsGKst~a~~La~   23 (171)
T PRK13947          3 NIVLIGFMGTGKTTVGKRVAT   23 (171)
T ss_pred             eEEEEcCCCCCHHHHHHHHHH
Confidence            478999999999999999987

>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain

Probab=97.20  E-value=0.0013  Score=50.13  Aligned_cols=90  Identities=17%  Similarity=0.101  Sum_probs=50.3

Q ss_pred             CceEEEEEeCCCCcHHHHH-HHHhcCcccccccCee-EEEEcCCCC-CHHHHHHHHHHHhCCCCCC---cccccccHHH-
Q 045087           64 QLSAVTILDSIGLDKTAFA-AEAYSSNYMKHYFDCH-AWVQEPYTC-YADQILDIIIKFLMPSSRL---SEIKDKNYEM-  136 (157)
Q Consensus        64 ~~~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~F~~~-~wv~~~~~~-~~~~~l~~i~~~l~~~~~~---~~~~~~~~~~-  136 (157)
                      +-.-++|.|.+|+|||+|| ..+.+.  .  +-+.. +++.++... ...++++.+...-......   ...+...... 
T Consensus        68 rGQr~~Ifg~~g~GKt~L~l~~i~~~--~--~~~v~~V~~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~  143 (274)
T cd01132          68 RGQRELIIGDRQTGKTAIAIDTIINQ--K--GKKVYCIYVAIGQKASTVAQVVKTLEEHGAMEYTIVVAATASDPAPLQY  143 (274)
T ss_pred             cCCEEEeeCCCCCCccHHHHHHHHHh--c--CCCeEEEEEecccchHHHHHHHHHHHhcCccceeEEEEeCCCCchhHHH
Confidence            4567899999999999996 556552  2  22344 666777654 4566666665432111000   0011112121 


Q ss_pred             ----HHHHHHHHh--cCCcEEEEeeCC
Q 045087          137 ----KKIILHEYL--MTKRYLIVIDDV  157 (157)
Q Consensus       137 ----~~~~l~~~L--~~kr~LlVlDdV  157 (157)
                          ..-.+.+++  +++.+||++||+
T Consensus       144 ~a~~~a~aiAE~fr~~G~~Vlvl~Dsl  170 (274)
T cd01132         144 LAPYTGCAMGEYFMDNGKHALIIYDDL  170 (274)
T ss_pred             HHHHHHHHHHHHHHHCCCCEEEEEcCh
Confidence                122333333  588999999985

The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.

>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]

Probab=97.20  E-value=0.00028  Score=49.94  Aligned_cols=20  Identities=20%  Similarity=0.225  Sum_probs=18.2

Q ss_pred             EEEEEeCCCCcHHHHHHHHh
Q 045087           67 AVTILDSIGLDKTAFAAEAY   86 (157)
Q Consensus        67 vi~I~G~gGiGKTtLa~~v~   86 (157)
                      .|+|+|.||+||||+++.+-
T Consensus         2 ~I~ITGTPGvGKTT~~~~L~   21 (180)
T COG1936           2 LIAITGTPGVGKTTVCKLLR   21 (180)
T ss_pred             eEEEeCCCCCchHHHHHHHH
Confidence            58999999999999998875

>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2

Probab=97.20  E-value=0.0005  Score=49.12  Aligned_cols=36  Identities=11%  Similarity=0.106  Sum_probs=28.9

Q ss_pred             ceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEE
Q 045087           65 LSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQ  102 (157)
Q Consensus        65 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~  102 (157)
                      .+++.|+|++|+|||||+..+..  .....|...++.+
T Consensus         2 ~r~ivl~Gpsg~GK~~l~~~L~~--~~~~~~~~~v~~T   37 (183)
T PF00625_consen    2 RRPIVLVGPSGSGKSTLAKRLIQ--EFPDKFGRVVSHT   37 (183)
T ss_dssp             SSEEEEESSTTSSHHHHHHHHHH--HSTTTEEEEEEEE
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH--hcccccccceeec
Confidence            46889999999999999999998  6666775444444

7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....

>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2

Probab=97.20  E-value=0.00023  Score=51.40  Aligned_cols=21  Identities=29%  Similarity=0.294  Sum_probs=19.3

Q ss_pred             EEEEEeCCCCcHHHHHHHHhc
Q 045087           67 AVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        67 vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      +|+|.|.+|+||||||+.+..
T Consensus         1 iigi~G~~GsGKSTl~~~l~~   21 (198)
T cd02023           1 IIGIAGGSGSGKTTVAEEIIE   21 (198)
T ss_pred             CEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999999876

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.

>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family

Probab=97.19  E-value=0.00024  Score=50.56  Aligned_cols=21  Identities=24%  Similarity=0.215  Sum_probs=19.1

Q ss_pred             EEEEEeCCCCcHHHHHHHHhc
Q 045087           67 AVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        67 vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      +|.|+|++|+||||+|+.+..
T Consensus         1 ~i~i~G~pGsGKst~a~~la~   21 (183)
T TIGR01359         1 VVFVLGGPGSGKGTQCAKIVE   21 (183)
T ss_pred             CEEEECCCCCCHHHHHHHHHH
Confidence            478999999999999998877

This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.

>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI

Probab=97.19  E-value=0.0019  Score=52.10  Aligned_cols=90  Identities=11%  Similarity=0.093  Sum_probs=49.8

Q ss_pred             CceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCCCC-CHHHHHHHHHHHhCCCCCC---cccccccHH----
Q 045087           64 QLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPYTC-YADQILDIIIKFLMPSSRL---SEIKDKNYE----  135 (157)
Q Consensus        64 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~-~~~~~l~~i~~~l~~~~~~---~~~~~~~~~----  135 (157)
                      +...++|.|..|+|||||+..+....  .  .+..++..++... ...++...+...=......   ...+....+    
T Consensus       136 ~Gq~~~I~G~sG~GKTtLl~~I~~~~--~--~~~~vi~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~tsd~~~~~r~~a  211 (411)
T TIGR03496       136 RGQRMGIFAGSGVGKSTLLGMMARYT--E--ADVVVVGLIGERGREVKEFIEDILGEEGLARSVVVAATADESPLMRLRA  211 (411)
T ss_pred             cCcEEEEECCCCCCHHHHHHHHhcCC--C--CCEEEEEEEecChHHHHHHHHHHhhCCCcceEEEEEECCCCCHHHHHHH
Confidence            34579999999999999999888732  2  1344445555533 3555555554331111000   001111111    


Q ss_pred             -HHHHHHHHHh--cCCcEEEEeeCC
Q 045087          136 -MKKIILHEYL--MTKRYLIVIDDV  157 (157)
Q Consensus       136 -~~~~~l~~~L--~~kr~LlVlDdV  157 (157)
                       ...-.+.+++  +++.+||++||+
T Consensus       212 ~~~a~tiAEyfr~~G~~Vll~~Dsl  236 (411)
T TIGR03496       212 AFYATAIAEYFRDQGKDVLLLMDSL  236 (411)
T ss_pred             HHHHHHHHHHHHHCCCCEEEEEeCh
Confidence             1222334444  588999999985

Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.

>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea

Probab=97.19  E-value=0.0036  Score=44.58  Aligned_cols=24  Identities=21%  Similarity=0.153  Sum_probs=21.7

Q ss_pred             CceEEEEEeCCCCcHHHHHHHHhc
Q 045087           64 QLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        64 ~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ...+++|+|..|.|||||++.++.
T Consensus        24 ~G~~~~l~G~nGsGKStLl~~i~G   47 (180)
T cd03214          24 AGEIVGILGPNGAGKSTLLKTLAG   47 (180)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhC
Confidence            345899999999999999999988

Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.

>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN

Probab=97.18  E-value=0.00032  Score=49.76  Aligned_cols=22  Identities=14%  Similarity=0.187  Sum_probs=19.6

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhc
Q 045087           66 SAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        66 ~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      .++.|+|++|+|||||++.+..
T Consensus         2 ~~~~i~G~sGsGKttl~~~l~~   23 (179)
T TIGR02322         2 RLIYVVGPSGAGKDTLLDYARA   23 (179)
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            3789999999999999998866

Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.

>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=97.18  E-value=0.0037  Score=53.25  Aligned_cols=94  Identities=13%  Similarity=0.126  Sum_probs=62.0

Q ss_pred             CCCCCccccHHHHHHHHHHHhcCC-----------CCceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCCCC
Q 045087           39 SKSRDTVGLDDRMEELLDLLIEGP-----------PQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPYTC  107 (157)
Q Consensus        39 ~~~~~~vGr~~~~~~l~~~L~~~~-----------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~  107 (157)
                      ....++-|..+..+.|++.+....           ....-|.++|++|+|||.||.++....       .--|+++..+ 
T Consensus       664 i~w~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~-------~~~fisvKGP-  735 (952)
T KOG0735|consen  664 IRWEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNS-------NLRFISVKGP-  735 (952)
T ss_pred             CCceecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhC-------CeeEEEecCH-
Confidence            345678888888888888886542           234568899999999999999988721       1235666554 


Q ss_pred             CHHHHHHHHHHHhCCCCCCcccccccHHHHHHHHHHHhcCCcEEEEeeC
Q 045087          108 YADQILDIIIKFLMPSSRLSEIKDKNYEMKKIILHEYLMTKRYLIVIDD  156 (157)
Q Consensus       108 ~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDd  156 (157)
                         +++    ...-+         .+++.....+.+.-.-++|+|.+|+
T Consensus       736 ---ElL----~KyIG---------aSEq~vR~lF~rA~~a~PCiLFFDE  768 (952)
T KOG0735|consen  736 ---ELL----SKYIG---------ASEQNVRDLFERAQSAKPCILFFDE  768 (952)
T ss_pred             ---HHH----HHHhc---------ccHHHHHHHHHHhhccCCeEEEecc
Confidence               222    22111         2234555555566677899999986

>TIGR03497 FliI_clade2 flagellar protein export ATPase FliI

Probab=97.17  E-value=0.0021  Score=51.79  Aligned_cols=90  Identities=13%  Similarity=0.112  Sum_probs=49.0

Q ss_pred             CceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCCCC-CHHHHHHHHHHHhCCCCCC---cccccccHH----
Q 045087           64 QLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPYTC-YADQILDIIIKFLMPSSRL---SEIKDKNYE----  135 (157)
Q Consensus        64 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~-~~~~~l~~i~~~l~~~~~~---~~~~~~~~~----  135 (157)
                      +...++|+|..|+|||||+..+...  ...  +..+...++... ...+++...+.+-+.....   ...+.....    
T Consensus       136 ~Gqri~I~G~sG~GKTtLl~~i~~~--~~~--~~gvi~~~Ger~~ev~e~~~~~l~~~~~~~~v~v~~tsd~~~~~r~~~  211 (413)
T TIGR03497       136 KGQRVGIFAGSGVGKSTLLGMIARN--AKA--DINVIALIGERGREVRDFIEKDLGEEGLKRSVVVVATSDQPALMRLKA  211 (413)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC--CCC--CeEEEEEEccchHHHHHHHHHHhcccccceEEEEEECCCCCHHHHHHH
Confidence            4568999999999999999988873  222  223333344333 4445555544321111000   001111212    


Q ss_pred             -HHHHHHHHHh--cCCcEEEEeeCC
Q 045087          136 -MKKIILHEYL--MTKRYLIVIDDV  157 (157)
Q Consensus       136 -~~~~~l~~~L--~~kr~LlVlDdV  157 (157)
                       .....+.+++  +++.+||++||+
T Consensus       212 ~~~a~tiAEyfr~~G~~Vll~~Dsl  236 (413)
T TIGR03497       212 AFTATAIAEYFRDQGKDVLLMMDSV  236 (413)
T ss_pred             HHHHHHHHHHHHHCCCCEEEEEcCc
Confidence             2223344454  588999999985

Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.

>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]

Probab=97.17  E-value=0.00058  Score=52.55  Aligned_cols=58  Identities=17%  Similarity=0.212  Sum_probs=45.3

Q ss_pred             CCCCccccHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeE
Q 045087           40 KSRDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHA   99 (157)
Q Consensus        40 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~   99 (157)
                      ...+++|.+..+..|.+.+..  ...++...+|++|.|||+-|.++.+..--.+.|.+++
T Consensus        34 t~de~~gQe~vV~~L~~a~~~--~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rv   91 (346)
T KOG0989|consen   34 TFDELAGQEHVVQVLKNALLR--RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRV   91 (346)
T ss_pred             cHHhhcchHHHHHHHHHHHhh--cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccch
Confidence            346789999999999999987  3578999999999999999988877322234465554

>PRK09112 DNA polymerase III subunit delta'; Validated

Probab=97.17  E-value=0.00088  Score=52.90  Aligned_cols=51  Identities=20%  Similarity=0.185  Sum_probs=41.3

Q ss_pred             ccCCCCCCccccHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087           36 SSSSKSRDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        36 ~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      +.+.....++|.+...+.|...+..+. -...+.++|..|+||||+|..+.+
T Consensus        17 ~~P~~~~~l~Gh~~a~~~L~~a~~~gr-l~ha~L~~G~~G~GKttlA~~lA~   67 (351)
T PRK09112         17 PSPSENTRLFGHEEAEAFLAQAYREGK-LHHALLFEGPEGIGKATLAFHLAN   67 (351)
T ss_pred             CCCCchhhccCcHHHHHHHHHHHHcCC-CCeeEeeECCCCCCHHHHHHHHHH
Confidence            334456779999999999999887763 334688899999999999998877

>PHA00729 NTP-binding motif containing protein

Probab=97.17  E-value=0.00069  Score=50.19  Aligned_cols=23  Identities=22%  Similarity=0.329  Sum_probs=20.8

Q ss_pred             ceEEEEEeCCCCcHHHHHHHHhc
Q 045087           65 LSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        65 ~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ...+.|+|.+|+||||||..+.+
T Consensus        17 f~nIlItG~pGvGKT~LA~aLa~   39 (226)
T PHA00729         17 FVSAVIFGKQGSGKTTYALKVAR   39 (226)
T ss_pred             eEEEEEECCCCCCHHHHHHHHHH
Confidence            45788999999999999999987

>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein

Probab=97.16  E-value=0.0032  Score=49.20  Aligned_cols=90  Identities=10%  Similarity=0.089  Sum_probs=50.1

Q ss_pred             CceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCC-CCCHHHHHHHHHHHhCCCCCC---cccccccHH----
Q 045087           64 QLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPY-TCYADQILDIIIKFLMPSSRL---SEIKDKNYE----  135 (157)
Q Consensus        64 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~-~~~~~~~l~~i~~~l~~~~~~---~~~~~~~~~----  135 (157)
                      ....++|+|..|.|||||.+.+...  ...  +..+...++. .....++....+..-......   ...+.....    
T Consensus        68 ~Gqri~I~G~sG~GKTtLl~~Ia~~--~~~--~~~vi~~iGer~~ev~~~~~~~~~~~~l~rtvvv~~t~d~~~~~r~~~  143 (326)
T cd01136          68 KGQRLGIFAGSGVGKSTLLGMIARG--TTA--DVNVIALIGERGREVREFIEKDLGEEGLKRSVVVVATSDESPLLRVKA  143 (326)
T ss_pred             CCcEEEEECCCCCChHHHHHHHhCC--CCC--CEEEEEEEecCCccHHHHHHHHHhcCccceEEEEEcCCCCCHHHHHHH
Confidence            3457899999999999999998873  221  2344444443 345566666555432211000   001111111    


Q ss_pred             -HHHHHHHHHh--cCCcEEEEeeCC
Q 045087          136 -MKKIILHEYL--MTKRYLIVIDDV  157 (157)
Q Consensus       136 -~~~~~l~~~L--~~kr~LlVlDdV  157 (157)
                       ...-.+.+++  +++.+||++||+
T Consensus       144 ~~~a~~~AEyfr~~g~~Vll~~Dsl  168 (326)
T cd01136         144 AYTATAIAEYFRDQGKDVLLLMDSL  168 (326)
T ss_pred             HHHHHHHHHHHHHcCCCeEEEeccc
Confidence             2222334444  588999999985

This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.

>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5)

Probab=97.15  E-value=0.00018  Score=47.06  Aligned_cols=20  Identities=25%  Similarity=0.345  Sum_probs=17.4

Q ss_pred             EEEEeCCCCcHHHHHHHHhc
Q 045087           68 VTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        68 i~I~G~gGiGKTtLa~~v~~   87 (157)
                      |-|+|.+|+|||+||..+..
T Consensus         1 I~i~G~~G~GKS~l~~~l~~   20 (107)
T PF00910_consen    1 IWIYGPPGIGKSTLAKELAK   20 (107)
T ss_pred             CEEECCCCCCHHHHHHHHHH
Confidence            45899999999999999765

All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity

>PRK05688 fliI flagellum-specific ATP synthase; Validated

Probab=97.15  E-value=0.0024  Score=51.94  Aligned_cols=90  Identities=12%  Similarity=0.055  Sum_probs=50.0

Q ss_pred             CceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCCCC-CHHHHHHHHHHHhCCCCCC---cccccccHHH---
Q 045087           64 QLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPYTC-YADQILDIIIKFLMPSSRL---SEIKDKNYEM---  136 (157)
Q Consensus        64 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~-~~~~~l~~i~~~l~~~~~~---~~~~~~~~~~---  136 (157)
                      +...++|+|..|+|||||++.+....    ..+..++..++... ...++...+...-......   ...+......   
T Consensus       167 ~GqrigI~G~sG~GKSTLl~~I~g~~----~~dv~V~g~Ig~rg~ev~~~~~~~~~~~~l~rsvvv~atsd~~p~~r~~a  242 (451)
T PRK05688        167 RGQRLGLFAGTGVGKSVLLGMMTRFT----EADIIVVGLIGERGREVKEFIEHILGEEGLKRSVVVASPADDAPLMRLRA  242 (451)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCC----CCCEEEEEEeCcCcHhHHHHHHHHhhcCCccEEEEEEECCCCCHHHHHHH
Confidence            34579999999999999999887731    12333444444432 4555555554432211100   0011222221   


Q ss_pred             --HHHHHHHHh--cCCcEEEEeeCC
Q 045087          137 --KKIILHEYL--MTKRYLIVIDDV  157 (157)
Q Consensus       137 --~~~~l~~~L--~~kr~LlVlDdV  157 (157)
                        ....+.+++  +++.+||++||+
T Consensus       243 ~~~a~aiAEyfrd~G~~VLl~~Dsl  267 (451)
T PRK05688        243 AMYCTRIAEYFRDKGKNVLLLMDSL  267 (451)
T ss_pred             HHHHHHHHHHHHHCCCCEEEEecch
Confidence              122344444  688999999985

>PRK07721 fliI flagellum-specific ATP synthase; Validated

Probab=97.14  E-value=0.0026  Score=51.67  Aligned_cols=24  Identities=17%  Similarity=0.192  Sum_probs=21.5

Q ss_pred             CceEEEEEeCCCCcHHHHHHHHhc
Q 045087           64 QLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        64 ~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      +...++|+|..|+|||||++.+..
T Consensus       157 ~Gq~i~I~G~sG~GKStLl~~I~~  180 (438)
T PRK07721        157 KGQRVGIFAGSGVGKSTLMGMIAR  180 (438)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhc
Confidence            456899999999999999998887

>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A

Probab=97.14  E-value=0.00082  Score=48.97  Aligned_cols=64  Identities=20%  Similarity=0.166  Sum_probs=36.0

Q ss_pred             HHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhcCccc-------ccccCeeEEEEcCCCCCHHHHHHHHHH
Q 045087           49 DRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSSNYM-------KHYFDCHAWVQEPYTCYADQILDIIIK  118 (157)
Q Consensus        49 ~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-------~~~F~~~~wv~~~~~~~~~~~l~~i~~  118 (157)
                      .+.+.+...+...    .+..|+|++|.|||+++..+..  .+       ...-...+-++.......+.++..+..
T Consensus         5 ~Q~~Ai~~~~~~~----~~~~i~GpPGTGKT~~l~~~i~--~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~   75 (236)
T PF13086_consen    5 SQREAIQSALSSN----GITLIQGPPGTGKTTTLASIIA--QLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK   75 (236)
T ss_dssp             HHHHHHHHHCTSS----E-EEEE-STTSSHHHHHHHHHH--HH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHcCC----CCEEEECCCCCChHHHHHHHHH--HhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence            3455554444332    2688899999999976655554  22       122344444555555566677777665

>PTZ00185 ATPase alpha subunit; Provisional

Probab=97.14  E-value=0.003  Score=52.16  Aligned_cols=94  Identities=13%  Similarity=0.096  Sum_probs=53.2

Q ss_pred             CceEEEEEeCCCCcHHHHH-HHHhcCcccc-----cccCeeEEEEcCCCCCHHHHHHHHHHHhC-CCCCC---ccccccc
Q 045087           64 QLSAVTILDSIGLDKTAFA-AEAYSSNYMK-----HYFDCHAWVQEPYTCYADQILDIIIKFLM-PSSRL---SEIKDKN  133 (157)
Q Consensus        64 ~~~vi~I~G~gGiGKTtLa-~~v~~~~~~~-----~~F~~~~wv~~~~~~~~~~~l~~i~~~l~-~~~~~---~~~~~~~  133 (157)
                      +...++|.|-.|+|||+|| ..+.+...+.     ++-..++++.+++..+.-.-+...+.+-+ .....   ...+...
T Consensus       188 RGQR~lIfGd~GtGKTtLAld~IinQ~~~~~~~~~~~~~v~VyvaIGeR~rEV~ei~~~L~e~GaL~~TvVV~AtAdep~  267 (574)
T PTZ00185        188 RGQRELIVGDRQTGKTSIAVSTIINQVRINQQILSKNAVISIYVSIGQRCSNVARIHRLLRSYGALRYTTVMAATAAEPA  267 (574)
T ss_pred             CCCEEEeecCCCCChHHHHHHHHHhhhhhccccccCCCCEEEEEEeccchHHHHHHHHHHHhcCCccceEEEEECCCCCH
Confidence            4567899999999999997 6666643221     23356788889887654333444444433 11100   0011111


Q ss_pred             HHH-----HHHHHHHHh--cCCcEEEEeeCC
Q 045087          134 YEM-----KKIILHEYL--MTKRYLIVIDDV  157 (157)
Q Consensus       134 ~~~-----~~~~l~~~L--~~kr~LlVlDdV  157 (157)
                      ..+     ....+.+++  +++.+|+|+||+
T Consensus       268 ~~r~~Apy~a~tiAEYFrd~GkdVLiv~DDL  298 (574)
T PTZ00185        268 GLQYLAPYSGVTMGEYFMNRGRHCLCVYDDL  298 (574)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCCEEEEEcCc
Confidence            111     122233444  588999999995

>TIGR03263 guanyl_kin guanylate kinase

Probab=97.14  E-value=0.00041  Score=49.20  Aligned_cols=22  Identities=14%  Similarity=0.228  Sum_probs=20.5

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhc
Q 045087           66 SAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        66 ~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ++++|+|++|+|||||++.++.
T Consensus         2 ~ii~l~G~~GsGKsTl~~~L~~   23 (180)
T TIGR03263         2 LLIVISGPSGVGKSTLVKALLE   23 (180)
T ss_pred             cEEEEECCCCCCHHHHHHHHHc
Confidence            4789999999999999999988

Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.

>PRK12678 transcription termination factor Rho; Provisional

Probab=97.13  E-value=0.0012  Score=55.14  Aligned_cols=92  Identities=12%  Similarity=0.062  Sum_probs=49.0

Q ss_pred             CceEEEEEeCCCCcHHHHHHHHhcCccccc-ccCeeEEE-EcCCCC-CHHHHHHHHHHHhCCC-CCCcccccccHHHHHH
Q 045087           64 QLSAVTILDSIGLDKTAFAAEAYSSNYMKH-YFDCHAWV-QEPYTC-YADQILDIIIKFLMPS-SRLSEIKDKNYEMKKI  139 (157)
Q Consensus        64 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~F~~~~wv-~~~~~~-~~~~~l~~i~~~l~~~-~~~~~~~~~~~~~~~~  139 (157)
                      +-....|+|.+|+|||||++.+.+  .+.. +-++.+++ .++... ...++...+-..+..+ .+.+...-.....+.-
T Consensus       415 kGQR~LIvgpp~aGKTtLL~~IAn--~i~~n~~~~~~ivvLIgERpeEVtdm~rsVkgeVVasT~D~p~~~~~~~a~~ai  492 (672)
T PRK12678        415 KGQRGLIVSPPKAGKTTILQNIAN--AITTNNPECHLMVVLVDERPEEVTDMQRSVKGEVIASTFDRPPSDHTTVAELAI  492 (672)
T ss_pred             cCCEeEEeCCCCCCHHHHHHHHHH--HHhhcCCCeEEEEEEEeCchhhHHHHHHhccceEEEECCCCCHHHHHHHHHHHH
Confidence            345788999999999999999988  3432 23444444 444433 3334433321111111 1100000111123333


Q ss_pred             HHHHHh--cCCcEEEEeeCC
Q 045087          140 ILHEYL--MTKRYLIVIDDV  157 (157)
Q Consensus       140 ~l~~~L--~~kr~LlVlDdV  157 (157)
                      .+.++|  .++.+||+||++
T Consensus       493 ~~Ae~fre~G~dVlillDSl  512 (672)
T PRK12678        493 ERAKRLVELGKDVVVLLDSI  512 (672)
T ss_pred             HHHHHHHHcCCCEEEEEeCc
Confidence            444555  688999999985

>PRK00279 adk adenylate kinase; Reviewed

Probab=97.13  E-value=0.0018  Score=47.49  Aligned_cols=21  Identities=19%  Similarity=0.101  Sum_probs=18.9

Q ss_pred             EEEEEeCCCCcHHHHHHHHhc
Q 045087           67 AVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        67 vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      .|.|.|++|+||||+|+.+..
T Consensus         2 ~I~v~G~pGsGKsT~a~~la~   22 (215)
T PRK00279          2 RLILLGPPGAGKGTQAKFIAE   22 (215)
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            478899999999999998876

>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT)

Probab=97.13  E-value=0.00044  Score=49.05  Aligned_cols=22  Identities=14%  Similarity=0.111  Sum_probs=20.3

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhc
Q 045087           66 SAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        66 ~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ++|.+.|++|+||||+|+.+..
T Consensus         3 ~~i~l~G~~gsGKst~a~~l~~   24 (175)
T cd00227           3 RIIILNGGSSAGKSSIARALQS   24 (175)
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            5889999999999999999877

Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.

>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor

Probab=97.12  E-value=0.0013  Score=47.01  Aligned_cols=21  Identities=14%  Similarity=0.011  Sum_probs=19.7

Q ss_pred             EEEEEeCCCCcHHHHHHHHhc
Q 045087           67 AVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        67 vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      +|+|.|+.|+||||+++.+.+
T Consensus         2 ~I~ieG~~GsGKtT~~~~L~~   22 (200)
T cd01672           2 FIVFEGIDGAGKTTLIELLAE   22 (200)
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            688999999999999999987

TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).

>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins

Probab=97.12  E-value=0.0037  Score=49.55  Aligned_cols=55  Identities=24%  Similarity=0.216  Sum_probs=38.2

Q ss_pred             CCCCCccccHHHHHHH---HHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhcCccccccc
Q 045087           39 SKSRDTVGLDDRMEEL---LDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYF   95 (157)
Q Consensus        39 ~~~~~~vGr~~~~~~l---~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F   95 (157)
                      .....+||..+..+..   .+++..+.-..+.+.+.|++|.|||+||..+.+  ++....
T Consensus        21 ~~~~GlVGQ~~AReAagiiv~mIk~~K~aGr~iLiaGppGtGKTAlA~~ia~--eLG~~~   78 (398)
T PF06068_consen   21 YIADGLVGQEKAREAAGIIVDMIKEGKIAGRAILIAGPPGTGKTALAMAIAK--ELGEDV   78 (398)
T ss_dssp             SEETTEES-HHHHHHHHHHHHHHHTT--TT-EEEEEE-TTSSHHHHHHHHHH--HCTTTS
T ss_pred             eccccccChHHHHHHHHHHHHHHhcccccCcEEEEeCCCCCCchHHHHHHHH--HhCCCC
Confidence            3456899998877764   455555544467899999999999999999999  665443

The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.

>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional

Probab=97.11  E-value=0.0004  Score=55.91  Aligned_cols=46  Identities=20%  Similarity=0.214  Sum_probs=34.9

Q ss_pred             CCccccHHHHHHHHHHHhc-------C-----C--CCceEEEEEeCCCCcHHHHHHHHhc
Q 045087           42 RDTVGLDDRMEELLDLLIE-------G-----P--PQLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        42 ~~~vGr~~~~~~l~~~L~~-------~-----~--~~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ..++|.+..++.|...+..       .     .  .....+.++|++|+|||+||+.+..
T Consensus        71 ~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~  130 (412)
T PRK05342         71 QYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLAR  130 (412)
T ss_pred             hHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHH
Confidence            4689999999988655521       0     0  1235688999999999999999986

>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs

Probab=97.11  E-value=0.0012  Score=46.95  Aligned_cols=45  Identities=13%  Similarity=0.064  Sum_probs=29.9

Q ss_pred             EEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCCCCCHHHHHHHH
Q 045087           68 VTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPYTCYADQILDII  116 (157)
Q Consensus        68 i~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~l~~i  116 (157)
                      +.|.|.+|+|||+||.++...  .-..=..++|++...  +..++...+
T Consensus         2 ~li~G~~G~GKT~l~~~~~~~--~~~~g~~v~~~s~e~--~~~~~~~~~   46 (187)
T cd01124           2 TLLSGGPGTGKTTFALQFLYA--GLARGEPGLYVTLEE--SPEELIENA   46 (187)
T ss_pred             EEEEcCCCCCHHHHHHHHHHH--HHHCCCcEEEEECCC--CHHHHHHHH
Confidence            578999999999999887652  212224567887654  455555443

A related protein is found in archaea.

>PRK06820 type III secretion system ATPase; Validated

Probab=97.11  E-value=0.0056  Score=49.71  Aligned_cols=90  Identities=12%  Similarity=0.150  Sum_probs=47.3

Q ss_pred             CceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCCCC-CHHHHHHHHHHHhCCCCCC---cccccccHHH---
Q 045087           64 QLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPYTC-YADQILDIIIKFLMPSSRL---SEIKDKNYEM---  136 (157)
Q Consensus        64 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~-~~~~~l~~i~~~l~~~~~~---~~~~~~~~~~---  136 (157)
                      +...++|+|.+|+|||||+..+...  .  +-+..++..++... ...+++...+..=......   ...+......   
T Consensus       162 ~Gqri~I~G~sG~GKStLl~~I~~~--~--~~dv~V~~~iGergrEv~ef~e~~l~~~~~~rtvvv~atsd~p~~~r~~a  237 (440)
T PRK06820        162 EGQRIGIFAAAGVGKSTLLGMLCAD--S--AADVMVLALIGERGREVREFLEQVLTPEARARTVVVVATSDRPALERLKG  237 (440)
T ss_pred             CCCEEEEECCCCCChHHHHHHHhcc--C--CCCEEEEEEEccChHHHHHHHHHhhccCCceeEEEEEeCCCCCHHHHHHH
Confidence            3458899999999999999988873  2  12334455555442 2333333322110000000   0011112221   


Q ss_pred             --HHHHHHHHh--cCCcEEEEeeCC
Q 045087          137 --KKIILHEYL--MTKRYLIVIDDV  157 (157)
Q Consensus       137 --~~~~l~~~L--~~kr~LlVlDdV  157 (157)
                        ....+.+++  +++.+||++||+
T Consensus       238 ~~~a~tiAEyfrd~G~~VLl~~Dsl  262 (440)
T PRK06820        238 LSTATTIAEYFRDRGKKVLLMADSL  262 (440)
T ss_pred             HHHHHHHHHHHHHcCCCEEEEccch
Confidence              222344555  588999999985

>PRK07196 fliI flagellum-specific ATP synthase; Validated

Probab=97.11  E-value=0.0032  Score=51.03  Aligned_cols=90  Identities=9%  Similarity=0.024  Sum_probs=48.1

Q ss_pred             CceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCC-CCCHHHHHHHHHHHhCCC--------CCCcccccccH
Q 045087           64 QLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPY-TCYADQILDIIIKFLMPS--------SRLSEIKDKNY  134 (157)
Q Consensus        64 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~-~~~~~~~l~~i~~~l~~~--------~~~~~~~~~~~  134 (157)
                      +...++|.|..|+|||||+..+....  .  .+..+...+.. .....++....+..-...        .+.+.......
T Consensus       154 ~GQ~igI~G~sGaGKSTLl~~I~g~~--~--~dv~vig~IGerg~ev~ef~~~~l~~~gl~rsvvv~~~~d~s~~~rl~a  229 (434)
T PRK07196        154 KGQRVGLMAGSGVGKSVLLGMITRYT--Q--ADVVVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAAPADESPLMRIKA  229 (434)
T ss_pred             cceEEEEECCCCCCccHHHHHHhccc--C--CCeEEEEEEeeecHHHHHHHHHHhhhcccceEEEEEecCCCChhhhHHH
Confidence            45689999999999999999887732  1  12322222322 223344443433332211        00000111222


Q ss_pred             HHHHHHHHHHh--cCCcEEEEeeCC
Q 045087          135 EMKKIILHEYL--MTKRYLIVIDDV  157 (157)
Q Consensus       135 ~~~~~~l~~~L--~~kr~LlVlDdV  157 (157)
                      .+....+.+++  +++.+||++||+
T Consensus       230 ~e~a~~iAEyfr~~g~~Vll~~Dsl  254 (434)
T PRK07196        230 TELCHAIATYYRDKGHDVLLLVDSL  254 (434)
T ss_pred             HHHHHHHHHHhhhccCCEEEeecch
Confidence            33344455554  578999999985

>PRK10536 hypothetical protein; Provisional

Probab=97.10  E-value=0.0013  Score=49.67  Aligned_cols=45  Identities=11%  Similarity=0.110  Sum_probs=36.8

Q ss_pred             CCCCccccHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhcC
Q 045087           40 KSRDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSS   88 (157)
Q Consensus        40 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~   88 (157)
                      +...+.++......+..+|...    .++.++|..|+|||+||.++..+
T Consensus        53 ~~~~i~p~n~~Q~~~l~al~~~----~lV~i~G~aGTGKT~La~a~a~~   97 (262)
T PRK10536         53 DTSPILARNEAQAHYLKAIESK----QLIFATGEAGCGKTWISAAKAAE   97 (262)
T ss_pred             CCccccCCCHHHHHHHHHHhcC----CeEEEECCCCCCHHHHHHHHHHH
Confidence            3456788888888888888653    38999999999999999887663

>TIGR01026 fliI_yscN ATPase FliI/YscN family

Probab=97.10  E-value=0.0025  Score=51.79  Aligned_cols=90  Identities=11%  Similarity=0.095  Sum_probs=47.3

Q ss_pred             CceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCCC-CCHHHHHHHHHHHhCCCCCC---cccccccHH----
Q 045087           64 QLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPYT-CYADQILDIIIKFLMPSSRL---SEIKDKNYE----  135 (157)
Q Consensus        64 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~-~~~~~~l~~i~~~l~~~~~~---~~~~~~~~~----  135 (157)
                      +...++|.|..|+|||||++.+...  ...  +..+...++.. ....++....+..-......   ...+.....    
T Consensus       162 ~Gq~~~I~G~sG~GKStLl~~I~~~--~~~--~~~vi~~iG~r~~ev~~~~~~~~~~~~l~~tvvv~~~~d~~p~~r~~~  237 (440)
T TIGR01026       162 KGQRIGIFAGSGVGKSTLLGMIARN--TEA--DVNVIALIGERGREVREFIEHDLGEEGLKRSVVVVATSDQSPLLRLKG  237 (440)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCC--CCC--CEEEEEEEeecchHHHHHHHHHhcccccceEEEEEECCCCCHHHHHHH
Confidence            3457899999999999999988873  221  22333334332 23444554433321100000   001111111    


Q ss_pred             -HHHHHHHHHh--cCCcEEEEeeCC
Q 045087          136 -MKKIILHEYL--MTKRYLIVIDDV  157 (157)
Q Consensus       136 -~~~~~l~~~L--~~kr~LlVlDdV  157 (157)
                       ...-.+.+++  +++.+||++||+
T Consensus       238 ~~~a~t~AE~frd~G~~Vll~~Dsl  262 (440)
T TIGR01026       238 AYVATAIAEYFRDQGKDVLLLMDSV  262 (440)
T ss_pred             HHHHHHHHHHHHHCCCCEEEEEeCh
Confidence             2222334444  588999999985

This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=97.09  E-value=0.0036  Score=47.27  Aligned_cols=25  Identities=16%  Similarity=0.046  Sum_probs=22.2

Q ss_pred             CceEEEEEeCCCCcHHHHHHHHhcC
Q 045087           64 QLSAVTILDSIGLDKTAFAAEAYSS   88 (157)
Q Consensus        64 ~~~vi~I~G~gGiGKTtLa~~v~~~   88 (157)
                      ...+++|.|+.|+|||||.+.++.-
T Consensus        27 ~G~i~~iiGpNG~GKSTLLk~l~g~   51 (258)
T COG1120          27 KGEITGILGPNGSGKSTLLKCLAGL   51 (258)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhcc
Confidence            3569999999999999999999873

>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate

Probab=97.09  E-value=0.00038  Score=47.92  Aligned_cols=22  Identities=9%  Similarity=0.187  Sum_probs=19.2

Q ss_pred             EEEEEeCCCCcHHHHHHHHhcC
Q 045087           67 AVTILDSIGLDKTAFAAEAYSS   88 (157)
Q Consensus        67 vi~I~G~gGiGKTtLa~~v~~~   88 (157)
                      ++.++|++|+||||+|+.+...
T Consensus         1 li~l~G~~GsGKST~a~~l~~~   22 (150)
T cd02021           1 IIVVMGVSGSGKSTVGKALAER   22 (150)
T ss_pred             CEEEEcCCCCCHHHHHHHHHhh
Confidence            3678999999999999998773

The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.

>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.09  E-value=0.0051  Score=49.69  Aligned_cols=24  Identities=21%  Similarity=0.256  Sum_probs=20.9

Q ss_pred             CceEEEEEeCCCCcHHHHHHHHhc
Q 045087           64 QLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        64 ~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ...+++++|..|+||||++..+..
T Consensus       190 ~g~vi~lvGpnG~GKTTtlakLA~  213 (420)
T PRK14721        190 QGGVYALIGPTGVGKTTTTAKLAA  213 (420)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            457999999999999999987765

>PRK00300 gmk guanylate kinase; Provisional

Probab=97.09  E-value=0.0005  Score=49.81  Aligned_cols=24  Identities=8%  Similarity=0.087  Sum_probs=21.5

Q ss_pred             ceEEEEEeCCCCcHHHHHHHHhcC
Q 045087           65 LSAVTILDSIGLDKTAFAAEAYSS   88 (157)
Q Consensus        65 ~~vi~I~G~gGiGKTtLa~~v~~~   88 (157)
                      ..+++|+|++|+|||||++.++..
T Consensus         5 g~~i~i~G~sGsGKstl~~~l~~~   28 (205)
T PRK00300          5 GLLIVLSGPSGAGKSTLVKALLER   28 (205)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhh
Confidence            468999999999999999999873

>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]

Probab=97.09  E-value=0.011  Score=44.54  Aligned_cols=108  Identities=19%  Similarity=0.154  Sum_probs=60.3

Q ss_pred             CCccccHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcC-CCCCHHHHHHHHHHHh
Q 045087           42 RDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEP-YTCYADQILDIIIKFL  120 (157)
Q Consensus        42 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~-~~~~~~~~l~~i~~~l  120 (157)
                      ...+.-..+.+.+...-..-..+..++.++|.-|.|||++++++...  .-+  +.++-+.++ ...+...++..|...+
T Consensus        28 ~~~~~~a~h~e~l~~l~~~i~d~qg~~~vtGevGsGKTv~~Ral~~s--~~~--d~~~~v~i~~~~~s~~~~~~ai~~~l  103 (269)
T COG3267          28 GLDYWAADHNEALLMLHAAIADGQGILAVTGEVGSGKTVLRRALLAS--LNE--DQVAVVVIDKPTLSDATLLEAIVADL  103 (269)
T ss_pred             hhhhhhhhhhHHHHHHHHHHhcCCceEEEEecCCCchhHHHHHHHHh--cCC--CceEEEEecCcchhHHHHHHHHHHHh
Confidence            33444444444444333322334569999999999999999955441  111  112224443 4467788889998888


Q ss_pred             CCCCCCccccc-ccHHHHHHHHHHHh-cCCc-EEEEeeC
Q 045087          121 MPSSRLSEIKD-KNYEMKKIILHEYL-MTKR-YLIVIDD  156 (157)
Q Consensus       121 ~~~~~~~~~~~-~~~~~~~~~l~~~L-~~kr-~LlVlDd  156 (157)
                      ..+..   ... .-.++....|.... +++| ..++.||
T Consensus       104 ~~~p~---~~~~~~~e~~~~~L~al~~~g~r~v~l~vdE  139 (269)
T COG3267         104 ESQPK---VNVNAVLEQIDRELAALVKKGKRPVVLMVDE  139 (269)
T ss_pred             ccCcc---chhHHHHHHHHHHHHHHHHhCCCCeEEeehh
Confidence            87321   111 11233333333333 4666 7777776

>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional

Probab=97.08  E-value=0.0039  Score=51.61  Aligned_cols=49  Identities=20%  Similarity=0.204  Sum_probs=40.7

Q ss_pred             CCCCccccHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhcC
Q 045087           40 KSRDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSS   88 (157)
Q Consensus        40 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~   88 (157)
                      ....++|....++++.+.+..-......|.|+|..|+|||++|+.+++.
T Consensus       185 ~~~~iig~s~~~~~~~~~i~~~a~~~~pVlI~Ge~GtGK~~~A~~ih~~  233 (509)
T PRK05022        185 KEGEMIGQSPAMQQLKKEIEVVAASDLNVLILGETGVGKELVARAIHAA  233 (509)
T ss_pred             cCCceeecCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHh
Confidence            3567999999999998888654444568899999999999999999883

>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor

Probab=97.07  E-value=0.00038  Score=47.41  Aligned_cols=21  Identities=19%  Similarity=0.137  Sum_probs=19.3

Q ss_pred             EEEEEeCCCCcHHHHHHHHhc
Q 045087           67 AVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        67 vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      +|.|.|.+|+||||+|+.+..
T Consensus         1 ~I~i~G~~GsGKst~a~~la~   21 (147)
T cd02020           1 IIAIDGPAGSGKSTVAKLLAK   21 (147)
T ss_pred             CEEEECCCCCCHHHHHHHHHH
Confidence            478999999999999998887

>TIGR01039 atpD ATP synthase, F1 beta subunit

Probab=97.07  E-value=0.0032  Score=51.25  Aligned_cols=93  Identities=11%  Similarity=0.159  Sum_probs=55.1

Q ss_pred             CceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCCCC-CHHHHHHHHHHHhCCCCCC---cccccccHH----
Q 045087           64 QLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPYTC-YADQILDIIIKFLMPSSRL---SEIKDKNYE----  135 (157)
Q Consensus        64 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~-~~~~~l~~i~~~l~~~~~~---~~~~~~~~~----  135 (157)
                      +...++|.|.+|+|||+|+..+..+.. .++=...+++.++... ...+++..+...=......   ...+.....    
T Consensus       142 ~GQr~~If~~~G~GKt~L~~~~~~~~~-~~~~~v~V~alIGER~rEv~ef~~~~~~~~~l~rtvvV~atsd~p~~~R~~a  220 (461)
T TIGR01039       142 KGGKIGLFGGAGVGKTVLIQELINNIA-KEHGGYSVFAGVGERTREGNDLYHEMKESGVIDKTALVYGQMNEPPGARMRV  220 (461)
T ss_pred             cCCEEEeecCCCCChHHHHHHHHHHHH-hcCCCeEEEEEecCCchHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHH
Confidence            456789999999999999988876321 1122366777776654 4567777775431111100   001122222    


Q ss_pred             -HHHHHHHHHh---cCCcEEEEeeCC
Q 045087          136 -MKKIILHEYL---MTKRYLIVIDDV  157 (157)
Q Consensus       136 -~~~~~l~~~L---~~kr~LlVlDdV  157 (157)
                       ...-.+.+++   +++.+||++||+
T Consensus       221 ~~~a~tiAEyfrd~~G~~VLll~Dsl  246 (461)
T TIGR01039       221 ALTGLTMAEYFRDEQGQDVLLFIDNI  246 (461)
T ss_pred             HHHHHHHHHHHHHhcCCeeEEEecch
Confidence             2233456666   468999999985

The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.

>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A

Probab=97.06  E-value=0.00092  Score=45.95  Aligned_cols=38  Identities=11%  Similarity=0.102  Sum_probs=26.6

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhcCcccc-cccCeeEEEEcCC
Q 045087           66 SAVTILDSIGLDKTAFAAEAYSSNYMK-HYFDCHAWVQEPY  105 (157)
Q Consensus        66 ~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~F~~~~wv~~~~  105 (157)
                      ++|.|+|..|+|||||++.+.+  .+. ..+...+......
T Consensus         1 pvv~VvG~~~sGKTTl~~~Li~--~l~~~g~~v~~ik~~~~   39 (140)
T PF03205_consen    1 PVVQVVGPKNSGKTTLIRKLIN--ELKRRGYRVAVIKHTDH   39 (140)
T ss_dssp             -EEEEEESTTSSHHHHHHHHHH--HHHHTT--EEEEEE-ST
T ss_pred             CEEEEECCCCCCHHHHHHHHHH--HHhHcCCceEEEEEccC
Confidence            4799999999999999999988  554 3455555555433

>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2

Probab=97.06  E-value=0.00052  Score=46.93  Aligned_cols=21  Identities=10%  Similarity=0.238  Sum_probs=19.2

Q ss_pred             EEEEEeCCCCcHHHHHHHHhc
Q 045087           67 AVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        67 vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ++.|+|++|+|||||++.+..
T Consensus         1 ~i~i~GpsGsGKstl~~~L~~   21 (137)
T cd00071           1 LIVLSGPSGVGKSTLLKRLLE   21 (137)
T ss_pred             CEEEECCCCCCHHHHHHHHHh
Confidence            368999999999999999988

7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.

>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase

Probab=97.06  E-value=0.0048  Score=49.93  Aligned_cols=90  Identities=12%  Similarity=0.128  Sum_probs=49.8

Q ss_pred             CceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCC-CCCHHHHHHHHHHHhCCCCCC---cccccccH-----
Q 045087           64 QLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPY-TCYADQILDIIIKFLMPSSRL---SEIKDKNY-----  134 (157)
Q Consensus        64 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~-~~~~~~~l~~i~~~l~~~~~~---~~~~~~~~-----  134 (157)
                      +...++|.|..|+|||||.+.+...  ..  .+..+...++. .....+++.............   ...+....     
T Consensus       144 ~Gq~~~I~G~sG~GKStLl~~I~~~--~~--~~~~vi~~iG~~~~ev~~~~~~~~~~~~~~~tvvv~~~s~~p~~~r~~~  219 (422)
T TIGR02546       144 EGQRIGIFAGAGVGKSTLLGMIARG--AS--ADVNVIALIGERGREVREFIEHHLGEEGRKRSVLVVSTSDRPSLERLKA  219 (422)
T ss_pred             CCCEEEEECCCCCChHHHHHHHhCC--CC--CCEEEEEEEccCCcCHHHHHHHHhccccccceEEEeccccCCHHHHHHH
Confidence            3457899999999999999999883  22  23344444443 345556655544332211110   00011111     


Q ss_pred             HHHHHHHHHHh--cCCcEEEEeeCC
Q 045087          135 EMKKIILHEYL--MTKRYLIVIDDV  157 (157)
Q Consensus       135 ~~~~~~l~~~L--~~kr~LlVlDdV  157 (157)
                      ......+.+++  .++++|+++|++
T Consensus       220 ~~~a~~~AE~f~~~g~~Vl~~~Dsl  244 (422)
T TIGR02546       220 AYTATAIAEYFRDQGKRVLLMMDSL  244 (422)
T ss_pred             HHHHHHHHHHHHHCCCcEEEEEeCc
Confidence            12223344444  578999999985

>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H

Probab=97.05  E-value=0.00032  Score=47.84  Aligned_cols=44  Identities=25%  Similarity=0.149  Sum_probs=31.0

Q ss_pred             cccHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhcC
Q 045087           45 VGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSS   88 (157)
Q Consensus        45 vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~   88 (157)
                      ||.-..++++.+.+..-......|.|+|..|+||+++|+.+++.
T Consensus         1 vG~S~~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~~   44 (138)
T PF14532_consen    1 VGKSPAMRRLRRQLERLAKSSSPVLITGEPGTGKSLLARALHRY   44 (138)
T ss_dssp             --SCHHHHHHHHHHHHHHCSSS-EEEECCTTSSHHHHHHCCHHT
T ss_pred             CCCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHhh
Confidence            46666677777666542223457889999999999999999884

>PRK10416 signal recognition particle-docking protein FtsY; Provisional

Probab=97.05  E-value=0.0049  Score=48.08  Aligned_cols=24  Identities=13%  Similarity=0.133  Sum_probs=21.5

Q ss_pred             CceEEEEEeCCCCcHHHHHHHHhc
Q 045087           64 QLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        64 ~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ...+++++|++|+||||++..+..
T Consensus       113 ~~~vi~lvGpnGsGKTTt~~kLA~  136 (318)
T PRK10416        113 KPFVILVVGVNGVGKTTTIGKLAH  136 (318)
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHH
Confidence            467999999999999999988866

>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated

Probab=97.05  E-value=0.0043  Score=44.05  Aligned_cols=49  Identities=10%  Similarity=0.116  Sum_probs=30.9

Q ss_pred             EEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCCCCCHHHHHHHHHHHhC
Q 045087           67 AVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPYTCYADQILDIIIKFLM  121 (157)
Q Consensus        67 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~l~~i~~~l~  121 (157)
                      .+.|.|.+|.|||++|..+...  ...   ...++.-... ...++.+.|..+..
T Consensus         3 ~ili~G~~~sGKS~~a~~l~~~--~~~---~~~~iat~~~-~~~e~~~ri~~h~~   51 (170)
T PRK05800          3 LILVTGGARSGKSRFAERLAAQ--SGL---QVLYIATAQP-FDDEMAARIAHHRQ   51 (170)
T ss_pred             EEEEECCCCccHHHHHHHHHHH--cCC---CcEeCcCCCC-ChHHHHHHHHHHHh
Confidence            6889999999999999988762  211   2334443333 33456666655443

>PTZ00088 adenylate kinase 1; Provisional

Probab=97.05  E-value=0.0011  Score=49.33  Aligned_cols=21  Identities=19%  Similarity=0.335  Sum_probs=19.1

Q ss_pred             EEEEEeCCCCcHHHHHHHHhc
Q 045087           67 AVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        67 vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      .|.|.|++|+||||+|+.+.+
T Consensus         8 rIvl~G~PGsGK~T~a~~La~   28 (229)
T PTZ00088          8 KIVLFGAPGVGKGTFAEILSK   28 (229)
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            388999999999999998877

>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]

Probab=97.03  E-value=0.0025  Score=45.04  Aligned_cols=23  Identities=26%  Similarity=0.200  Sum_probs=20.6

Q ss_pred             ceEEEEEeCCCCcHHHHHHHHhc
Q 045087           65 LSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        65 ~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      .+++.|+|.+|+||||+.+.+..
T Consensus         4 ~kvvvitGVpGvGKTTVl~~~~~   26 (189)
T COG2019           4 RKVVVITGVPGVGKTTVLKIALK   26 (189)
T ss_pred             ceEEEEEcCCCCChHHHHHHHHH
Confidence            57899999999999999987766

>PRK03846 adenylylsulfate kinase; Provisional

Probab=97.03  E-value=0.00066  Score=49.15  Aligned_cols=25  Identities=12%  Similarity=-0.017  Sum_probs=22.3

Q ss_pred             CCceEEEEEeCCCCcHHHHHHHHhc
Q 045087           63 PQLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        63 ~~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ++..++.|+|++|+||||||+.+..
T Consensus        22 ~~~~~i~i~G~~GsGKSTla~~l~~   46 (198)
T PRK03846         22 HKGVVLWFTGLSGSGKSTVAGALEE   46 (198)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHH
Confidence            3567999999999999999999877

>PRK13949 shikimate kinase; Provisional

Probab=97.02  E-value=0.00053  Score=48.58  Aligned_cols=21  Identities=14%  Similarity=0.254  Sum_probs=19.3

Q ss_pred             EEEEEeCCCCcHHHHHHHHhc
Q 045087           67 AVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        67 vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      -|.|+|++|.||||+++.+.+
T Consensus         3 ~I~liG~~GsGKstl~~~La~   23 (169)
T PRK13949          3 RIFLVGYMGAGKTTLGKALAR   23 (169)
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            588999999999999998877

>PRK06793 fliI flagellum-specific ATP synthase; Validated

Probab=97.02  E-value=0.0051  Score=49.84  Aligned_cols=90  Identities=11%  Similarity=0.080  Sum_probs=50.6

Q ss_pred             CceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcC-CCCCHHHHHHHHHHHhCCCCCC--c-ccccccH-----
Q 045087           64 QLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEP-YTCYADQILDIIIKFLMPSSRL--S-EIKDKNY-----  134 (157)
Q Consensus        64 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~-~~~~~~~~l~~i~~~l~~~~~~--~-~~~~~~~-----  134 (157)
                      +...++|+|..|.|||||+..++...  +.  +..+...++ +.....+++...+..-+.....  . ..+....     
T Consensus       155 ~Gqri~I~G~sG~GKTtLl~~Ia~~~--~~--~~gvI~~iGerg~ev~e~~~~~l~~~gl~~tvvv~~tsd~s~~~r~ra  230 (432)
T PRK06793        155 IGQKIGIFAGSGVGKSTLLGMIAKNA--KA--DINVISLVGERGREVKDFIRKELGEEGMRKSVVVVATSDESHLMQLRA  230 (432)
T ss_pred             CCcEEEEECCCCCChHHHHHHHhccC--CC--CeEEEEeCCCCcccHHHHHHHHhhhcccceeEEEEECCCCCHHHHHHH
Confidence            34588999999999999999998842  21  222222333 3356677777665542211100  0 0111111     


Q ss_pred             HHHHHHHHHHh--cCCcEEEEeeCC
Q 045087          135 EMKKIILHEYL--MTKRYLIVIDDV  157 (157)
Q Consensus       135 ~~~~~~l~~~L--~~kr~LlVlDdV  157 (157)
                      ......+.+++  +++.+||++||+
T Consensus       231 ~~~a~~iAEyfr~~G~~VLlilDsl  255 (432)
T PRK06793        231 AKLATSIAEYFRDQGNNVLLMMDSV  255 (432)
T ss_pred             HHHHHHHHHHHHHcCCcEEEEecch
Confidence            12223344444  478999999985

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=97.01  E-value=0.0047  Score=44.11  Aligned_cols=23  Identities=17%  Similarity=0.072  Sum_probs=21.1

Q ss_pred             ceEEEEEeCCCCcHHHHHHHHhc
Q 045087           65 LSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        65 ~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ..+++|+|..|.|||||.+.+..
T Consensus        25 Ge~~~l~G~nGsGKSTLl~~l~G   47 (177)
T cd03222          25 GEVIGIVGPNGTGKTTAVKILAG   47 (177)
T ss_pred             CCEEEEECCCCChHHHHHHHHHc
Confidence            45999999999999999999987

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU)

Probab=97.01  E-value=0.003  Score=44.77  Aligned_cols=46  Identities=9%  Similarity=0.095  Sum_probs=32.1

Q ss_pred             EEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCCCCCHHHHHHHHHHH
Q 045087           68 VTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPYTCYADQILDIIIKF  119 (157)
Q Consensus        68 i~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~l~~i~~~  119 (157)
                      +.|.|.+|.|||++|.++...     .....+++.....++. ++.+.|...
T Consensus         2 ~li~G~~~sGKS~~a~~~~~~-----~~~~~~y~at~~~~d~-em~~rI~~H   47 (169)
T cd00544           2 ILVTGGARSGKSRFAERLAAE-----LGGPVTYIATAEAFDD-EMAERIARH   47 (169)
T ss_pred             EEEECCCCCCHHHHHHHHHHh-----cCCCeEEEEccCcCCH-HHHHHHHHH
Confidence            578999999999999988652     2235667776666653 455555543

CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.

>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional

Probab=97.01  E-value=0.00084  Score=47.80  Aligned_cols=24  Identities=17%  Similarity=0.177  Sum_probs=21.8

Q ss_pred             CceEEEEEeCCCCcHHHHHHHHhc
Q 045087           64 QLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        64 ~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ..++++|+|..|+|||||++.+..
T Consensus         5 ~~~ii~ivG~sgsGKTTLi~~li~   28 (173)
T PRK10751          5 MIPLLAIAAWSGTGKTTLLKKLIP   28 (173)
T ss_pred             CceEEEEECCCCChHHHHHHHHHH
Confidence            467999999999999999999887

>PRK14530 adenylate kinase; Provisional

Probab=97.00  E-value=0.00055  Score=50.18  Aligned_cols=22  Identities=14%  Similarity=0.191  Sum_probs=19.8

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhc
Q 045087           66 SAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        66 ~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      +.|.|+|++|+||||+|+.+..
T Consensus         4 ~~I~i~G~pGsGKsT~~~~La~   25 (215)
T PRK14530          4 PRILLLGAPGAGKGTQSSNLAE   25 (215)
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3688999999999999998876

>PRK09087 hypothetical protein; Validated

Probab=97.00  E-value=0.0018  Score=48.08  Aligned_cols=24  Identities=21%  Similarity=0.199  Sum_probs=21.2

Q ss_pred             ceEEEEEeCCCCcHHHHHHHHhcC
Q 045087           65 LSAVTILDSIGLDKTAFAAEAYSS   88 (157)
Q Consensus        65 ~~vi~I~G~gGiGKTtLa~~v~~~   88 (157)
                      .+.+.|||.+|+|||+|++..+..
T Consensus        44 ~~~l~l~G~~GsGKThLl~~~~~~   67 (226)
T PRK09087         44 SPVVVLAGPVGSGKTHLASIWREK   67 (226)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHh
Confidence            467899999999999999988863

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth

Probab=97.00  E-value=0.0043  Score=42.67  Aligned_cols=25  Identities=8%  Similarity=0.069  Sum_probs=22.0

Q ss_pred             CceEEEEEeCCCCcHHHHHHHHhcC
Q 045087           64 QLSAVTILDSIGLDKTAFAAEAYSS   88 (157)
Q Consensus        64 ~~~vi~I~G~gGiGKTtLa~~v~~~   88 (157)
                      ...+++|+|..|.|||||++.+..-
T Consensus        25 ~Ge~~~i~G~nGsGKStLl~~l~G~   49 (144)
T cd03221          25 PGDRIGLVGRNGAGKSTLLKLIAGE   49 (144)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHcCC
Confidence            3468999999999999999999873

EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.

>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants

Probab=96.99  E-value=0.00056  Score=47.04  Aligned_cols=20  Identities=15%  Similarity=0.262  Sum_probs=18.6

Q ss_pred             EEEEeCCCCcHHHHHHHHhc
Q 045087           68 VTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        68 i~I~G~gGiGKTtLa~~v~~   87 (157)
                      |.++|++|.||||+|+.+..
T Consensus         2 i~l~G~~GsGKstla~~la~   21 (154)
T cd00464           2 IVLIGMMGAGKTTVGRLLAK   21 (154)
T ss_pred             EEEEcCCCCCHHHHHHHHHH
Confidence            67899999999999999987

Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.

>PRK10078 ribose 1,5-bisphosphokinase; Provisional

Probab=96.99  E-value=0.00066  Score=48.63  Aligned_cols=23  Identities=13%  Similarity=0.174  Sum_probs=20.5

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhcC
Q 045087           66 SAVTILDSIGLDKTAFAAEAYSS   88 (157)
Q Consensus        66 ~vi~I~G~gGiGKTtLa~~v~~~   88 (157)
                      .++.|+|++|+|||||++.+...
T Consensus         3 ~~i~l~G~sGsGKsTl~~~l~~~   25 (186)
T PRK10078          3 KLIWLMGPSGSGKDSLLAALRQR   25 (186)
T ss_pred             cEEEEECCCCCCHHHHHHHHhcc
Confidence            37889999999999999999773

>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []

Probab=96.99  E-value=0.00075  Score=47.82  Aligned_cols=20  Identities=20%  Similarity=0.293  Sum_probs=17.7

Q ss_pred             EEEEeCCCCcHHHHHHHHhc
Q 045087           68 VTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        68 i~I~G~gGiGKTtLa~~v~~   87 (157)
                      +.|+|.+|+|||||.+.+++
T Consensus         2 i~iTG~pG~GKTTll~k~i~   21 (168)
T PF03266_consen    2 IFITGPPGVGKTTLLKKVIE   21 (168)
T ss_dssp             EEEES-TTSSHHHHHHHHHH
T ss_pred             EEEECcCCCCHHHHHHHHHH
Confidence            68999999999999999887

It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.

>PRK09435 membrane ATPase/protein kinase; Provisional

Probab=96.99  E-value=0.0027  Score=49.80  Aligned_cols=37  Identities=24%  Similarity=0.280  Sum_probs=29.0

Q ss_pred             HHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087           51 MEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        51 ~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ...|.+.+.....+..+|+|.|.+|+|||||+..+..
T Consensus        42 ~~~l~~~~~~~~~~~~~igi~G~~GaGKSTl~~~l~~   78 (332)
T PRK09435         42 AQELLDALLPHTGNALRIGITGVPGVGKSTFIEALGM   78 (332)
T ss_pred             HHHHHHHHhhcCCCcEEEEEECCCCCCHHHHHHHHHH
Confidence            3456666654445678999999999999999998766

>PRK06305 DNA polymerase III subunits gamma and tau; Validated

Probab=96.99  E-value=0.0013  Score=53.67  Aligned_cols=47  Identities=19%  Similarity=0.072  Sum_probs=38.6

Q ss_pred             CCCCccccHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087           40 KSRDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        40 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ...+++|.+..++.|.+++..+. -...+.++|.+|+||||+|+.+.+
T Consensus        15 ~~~diiGq~~~v~~L~~~i~~~~-i~ha~Lf~Gp~G~GKtt~A~~lAk   61 (451)
T PRK06305         15 TFSEILGQDAVVAVLKNALRFNR-AAHAYLFSGIRGTGKTTLARIFAK   61 (451)
T ss_pred             CHHHhcCcHHHHHHHHHHHHcCC-CceEEEEEcCCCCCHHHHHHHHHH
Confidence            34678999999999999987653 235677899999999999988866

>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated

Probab=96.99  E-value=0.0015  Score=54.77  Aligned_cols=46  Identities=15%  Similarity=0.039  Sum_probs=34.2

Q ss_pred             CCccccHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087           42 RDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        42 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      +..+.|.+-.+.|.+..........+|.++|++|+||||+|+.++.
T Consensus       369 P~~f~rpeV~~iL~~~~~~r~~~g~~Ivl~Gl~GSGKSTia~~La~  414 (568)
T PRK05537        369 PEWFSFPEVVAELRRTYPPRHKQGFTVFFTGLSGAGKSTIAKALMV  414 (568)
T ss_pred             ChhhcHHHHHHHHHHHhccccCCCeEEEEECCCCChHHHHHHHHHH
Confidence            4445566666666665554445566899999999999999999987

>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily

Probab=96.99  E-value=0.0067  Score=48.97  Aligned_cols=71  Identities=15%  Similarity=0.095  Sum_probs=41.7

Q ss_pred             ccHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCCCCCHHHHHHHHHHHh
Q 045087           46 GLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPYTCYADQILDIIIKFL  120 (157)
Q Consensus        46 Gr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~l~~i~~~l  120 (157)
                      |.......|-+++. +-....++.|.|.+|+|||++|..+..+...+.. ..++|++..  .+..++...++...
T Consensus       176 gi~tG~~~LD~~~~-G~~~g~liviag~pg~GKT~~al~ia~~~a~~~g-~~v~~fSlE--m~~~~l~~Rl~~~~  246 (421)
T TIGR03600       176 GLSTGLPKLDRLTN-GLVKGDLIVIGARPSMGKTTLALNIAENVALREG-KPVLFFSLE--MSAEQLGERLLASK  246 (421)
T ss_pred             ceeCCChhHHHHhc-CCCCCceEEEEeCCCCCHHHHHHHHHHHHHHhCC-CcEEEEECC--CCHHHHHHHHHHHH
Confidence            33333344444332 3334568889999999999999888753222222 245666643  35566666665543

Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.

>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX)

Probab=96.97  E-value=0.00079  Score=54.19  Aligned_cols=47  Identities=15%  Similarity=0.142  Sum_probs=35.7

Q ss_pred             CCCccccHHHHHHHHHHHhc----------CC------CCceEEEEEeCCCCcHHHHHHHHhc
Q 045087           41 SRDTVGLDDRMEELLDLLIE----------GP------PQLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        41 ~~~~vGr~~~~~~l~~~L~~----------~~------~~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ...++|.++.++.|...+..          ..      .....+.++|++|+|||+||+.+..
T Consensus        76 ~~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~  138 (413)
T TIGR00382        76 DEYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLAR  138 (413)
T ss_pred             cceecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHH
Confidence            35689999999988665521          11      0125789999999999999999986

A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.

>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I

Probab=96.97  E-value=0.0015  Score=51.38  Aligned_cols=45  Identities=20%  Similarity=0.220  Sum_probs=35.3

Q ss_pred             CCCccccHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087           41 SRDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        41 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      -..++|.+..+..|.-.+....  ..-+.|.|.+|+|||||++.+..
T Consensus         3 f~~ivgq~~~~~al~~~~~~~~--~g~vli~G~~G~gKttl~r~~~~   47 (337)
T TIGR02030         3 FTAIVGQDEMKLALLLNVIDPK--IGGVMVMGDRGTGKSTAVRALAA   47 (337)
T ss_pred             ccccccHHHHHHHHHHHhcCCC--CCeEEEEcCCCCCHHHHHHHHHH
Confidence            3568999999988765555432  44677999999999999999964

This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.

>CHL00060 atpB ATP synthase CF1 beta subunit

Probab=96.97  E-value=0.0035  Score=51.45  Aligned_cols=93  Identities=12%  Similarity=0.155  Sum_probs=56.1

Q ss_pred             CceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCCCC-CHHHHHHHHHHHhCCCCC-------C---cccccc
Q 045087           64 QLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPYTC-YADQILDIIIKFLMPSSR-------L---SEIKDK  132 (157)
Q Consensus        64 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~-~~~~~l~~i~~~l~~~~~-------~---~~~~~~  132 (157)
                      +...++|.|-+|+|||+|+..+.... .+.+=+.++++.++... ...+++..++..-..+..       .   ...+..
T Consensus       160 kGQR~gIfgg~GvGKs~L~~~~~~~~-~~~~~dv~V~~lIGERgrEv~efi~~~~~~~~~~~~~~~~~rsvvv~atsd~p  238 (494)
T CHL00060        160 RGGKIGLFGGAGVGKTVLIMELINNI-AKAHGGVSVFGGVGERTREGNDLYMEMKESGVINEQNIAESKVALVYGQMNEP  238 (494)
T ss_pred             cCCEEeeecCCCCChhHHHHHHHHHH-HHhcCCeEEEEEeccCchHHHHHHHHHHhcCccccCcccccceEEEEECCCCC
Confidence            45689999999999999998777631 11112678888887654 456777777652111110       0   001111


Q ss_pred             cHH-----HHHHHHHHHhc--CC-cEEEEeeCC
Q 045087          133 NYE-----MKKIILHEYLM--TK-RYLIVIDDV  157 (157)
Q Consensus       133 ~~~-----~~~~~l~~~L~--~k-r~LlVlDdV  157 (157)
                      ...     ...-.+.++++  ++ .+||++||+
T Consensus       239 ~~~R~~a~~~A~tiAEyfrd~g~~~VLll~Dsl  271 (494)
T CHL00060        239 PGARMRVGLTALTMAEYFRDVNKQDVLLFIDNI  271 (494)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCCCEEEEcccc
Confidence            111     33444667773  44 899999996

>PLN02924 thymidylate kinase

Probab=96.97  E-value=0.0038  Score=46.13  Aligned_cols=25  Identities=12%  Similarity=-0.061  Sum_probs=22.2

Q ss_pred             CceEEEEEeCCCCcHHHHHHHHhcC
Q 045087           64 QLSAVTILDSIGLDKTAFAAEAYSS   88 (157)
Q Consensus        64 ~~~vi~I~G~gGiGKTtLa~~v~~~   88 (157)
                      ....|+|-|..|+||||+++.+.+.
T Consensus        15 ~g~~IviEGiDGsGKsTq~~~L~~~   39 (220)
T PLN02924         15 RGALIVLEGLDRSGKSTQCAKLVSF   39 (220)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            4568999999999999999999883

>PRK06761 hypothetical protein; Provisional

Probab=96.96  E-value=0.0016  Score=49.83  Aligned_cols=23  Identities=17%  Similarity=0.088  Sum_probs=21.1

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhcC
Q 045087           66 SAVTILDSIGLDKTAFAAEAYSS   88 (157)
Q Consensus        66 ~vi~I~G~gGiGKTtLa~~v~~~   88 (157)
                      +++.|.|++|+||||+++.+++.
T Consensus         4 ~lIvI~G~~GsGKTTla~~L~~~   26 (282)
T PRK06761          4 KLIIIEGLPGFGKSTTAKMLNDI   26 (282)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHh
Confidence            57899999999999999999984

>PRK07471 DNA polymerase III subunit delta'; Validated

Probab=96.96  E-value=0.002  Score=51.19  Aligned_cols=49  Identities=20%  Similarity=0.166  Sum_probs=39.4

Q ss_pred             CCCCCCccccHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087           38 SSKSRDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        38 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      +....+++|.+...+.|.+.+..+. -...+.++|+.|+||+|+|..+.+
T Consensus        15 P~~~~~iiGq~~~~~~L~~~~~~~r-l~HA~Lf~Gp~G~GK~~lA~~~A~   63 (365)
T PRK07471         15 PRETTALFGHAAAEAALLDAYRSGR-LHHAWLIGGPQGIGKATLAYRMAR   63 (365)
T ss_pred             CCchhhccChHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHH
Confidence            3345679999999999999887753 234588999999999999987766

>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional

Probab=96.95  E-value=0.0018  Score=50.66  Aligned_cols=46  Identities=20%  Similarity=0.216  Sum_probs=37.6

Q ss_pred             CCccccHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087           42 RDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        42 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ..++|....+.++.+.+..-......|.|+|..|+||+++|+.++.
T Consensus         6 ~~liG~S~~~~~~~~~i~~~a~~~~pVlI~GE~GtGK~~lA~~iH~   51 (326)
T PRK11608          6 DNLLGEANSFLEVLEQVSRLAPLDKPVLIIGERGTGKELIASRLHY   51 (326)
T ss_pred             CccEECCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHH
Confidence            4689999999888888765333345788999999999999999986

>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis

Probab=96.95  E-value=0.0016  Score=45.86  Aligned_cols=36  Identities=22%  Similarity=0.375  Sum_probs=29.5

Q ss_pred             HHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhcCc
Q 045087           49 DRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSSN   89 (157)
Q Consensus        49 ~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~   89 (157)
                      ..+++|.++|..     +++.++|.+|+|||||...+..+.
T Consensus        24 ~g~~~l~~~l~~-----k~~vl~G~SGvGKSSLiN~L~~~~   59 (161)
T PF03193_consen   24 EGIEELKELLKG-----KTSVLLGQSGVGKSSLINALLPEA   59 (161)
T ss_dssp             TTHHHHHHHHTT-----SEEEEECSTTSSHHHHHHHHHTSS
T ss_pred             cCHHHHHHHhcC-----CEEEEECCCCCCHHHHHHHHHhhc
Confidence            456778777754     488999999999999999998863

RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.

>PRK13948 shikimate kinase; Provisional

Probab=96.95  E-value=0.0008  Score=48.30  Aligned_cols=24  Identities=17%  Similarity=0.177  Sum_probs=21.5

Q ss_pred             CceEEEEEeCCCCcHHHHHHHHhc
Q 045087           64 QLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        64 ~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ....|.++|+.|+||||+++.+..
T Consensus         9 ~~~~I~LiG~~GsGKSTvg~~La~   32 (182)
T PRK13948          9 PVTWVALAGFMGTGKSRIGWELSR   32 (182)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHH
Confidence            356889999999999999999987

>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]

Probab=96.95  E-value=0.0007  Score=49.43  Aligned_cols=24  Identities=21%  Similarity=0.225  Sum_probs=21.7

Q ss_pred             ceEEEEEeCCCCcHHHHHHHHhcC
Q 045087           65 LSAVTILDSIGLDKTAFAAEAYSS   88 (157)
Q Consensus        65 ~~vi~I~G~gGiGKTtLa~~v~~~   88 (157)
                      ..+|+|-||-|+||||||+.+.++
T Consensus         4 ~~~IvI~G~IG~GKSTLa~~La~~   27 (216)
T COG1428           4 AMVIVIEGMIGAGKSTLAQALAEH   27 (216)
T ss_pred             ccEEEEecccccCHHHHHHHHHHH
Confidence            468999999999999999999884

>PRK13407 bchI magnesium chelatase subunit I; Provisional

Probab=96.95  E-value=0.0012  Score=51.81  Aligned_cols=45  Identities=13%  Similarity=0.190  Sum_probs=34.5

Q ss_pred             CCCccccHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087           41 SRDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        41 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      .+.++|.+..++.|.-.+...  +...+.+.|.+|+||||+|+.+..
T Consensus         7 f~~i~Gq~~~~~~l~~~~~~~--~~~~vLl~G~pG~gKT~lar~la~   51 (334)
T PRK13407          7 FSAIVGQEEMKQAMVLTAIDP--GIGGVLVFGDRGTGKSTAVRALAA   51 (334)
T ss_pred             HHHhCCHHHHHHHHHHHHhcc--CCCcEEEEcCCCCCHHHHHHHHHH
Confidence            467899999988876544322  134688999999999999998855

>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family

Probab=96.95  E-value=0.004  Score=45.81  Aligned_cols=59  Identities=19%  Similarity=0.247  Sum_probs=37.9

Q ss_pred             HHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCCCCCHHHHHHH
Q 045087           53 ELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPYTCYADQILDI  115 (157)
Q Consensus        53 ~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~l~~  115 (157)
                      .|-+.|..+-....++.|.|.+|+|||++|..++.. ..+. =..++|++...  +..++.+.
T Consensus         4 ~LD~~l~gGi~~g~~~li~G~~G~GKt~~~~~~~~~-~~~~-g~~~~y~s~e~--~~~~l~~~   62 (224)
T TIGR03880         4 GLDEMLGGGFPEGHVIVVIGEYGTGKTTFSLQFLYQ-GLKN-GEKAMYISLEE--REERILGY   62 (224)
T ss_pred             hhHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHH-HHhC-CCeEEEEECCC--CHHHHHHH
Confidence            344445444455679999999999999999877652 1222 24567777765  34454444

This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.

>PRK12339 2-phosphoglycerate kinase; Provisional

Probab=96.94  E-value=0.00084  Score=48.80  Aligned_cols=24  Identities=17%  Similarity=0.023  Sum_probs=21.4

Q ss_pred             ceEEEEEeCCCCcHHHHHHHHhcC
Q 045087           65 LSAVTILDSIGLDKTAFAAEAYSS   88 (157)
Q Consensus        65 ~~vi~I~G~gGiGKTtLa~~v~~~   88 (157)
                      ..++.|.|.+|+||||+|+.+.+.
T Consensus         3 ~~~i~i~G~~G~GKst~a~~l~~~   26 (197)
T PRK12339          3 STIHFIGGIPGVGKTSISGYIARH   26 (197)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHh
Confidence            468999999999999999999883

>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional

Probab=96.93  E-value=0.0051  Score=52.75  Aligned_cols=48  Identities=21%  Similarity=0.165  Sum_probs=38.1

Q ss_pred             CCCccccHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhcC
Q 045087           41 SRDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSS   88 (157)
Q Consensus        41 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~   88 (157)
                      ...++|....+..+.+.+..-......|.|+|..|+|||++|+.+++.
T Consensus       375 ~~~liG~S~~~~~~~~~~~~~a~~~~pVLI~GE~GTGK~~lA~~ih~~  422 (686)
T PRK15429        375 FGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNL  422 (686)
T ss_pred             ccceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHh
Confidence            347999999888887776543223457889999999999999999884

>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]

Probab=96.93  E-value=0.0016  Score=50.85  Aligned_cols=23  Identities=26%  Similarity=0.180  Sum_probs=19.5

Q ss_pred             ceEEEEEeCCCCcHHHHHHHHhc
Q 045087           65 LSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        65 ~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      .+++.+.|.||+||||+|.+..-
T Consensus         2 ~riv~f~GKGGVGKTT~aaA~A~   24 (322)
T COG0003           2 TRIVFFTGKGGVGKTTIAAATAV   24 (322)
T ss_pred             cEEEEEecCCcccHHHHHHHHHH
Confidence            46889999999999999987544

>TIGR03324 alt_F1F0_F1_al alternate F1F0 ATPase, F1 subunit alpha

Probab=96.92  E-value=0.005  Score=50.61  Aligned_cols=90  Identities=16%  Similarity=0.055  Sum_probs=53.9

Q ss_pred             CceEEEEEeCCCCcHHHHH-HHHhcCcccccccCe-eEEEEcCCCC-CHHHHHHHHHHHhCCCCCC---cccccccHHH-
Q 045087           64 QLSAVTILDSIGLDKTAFA-AEAYSSNYMKHYFDC-HAWVQEPYTC-YADQILDIIIKFLMPSSRL---SEIKDKNYEM-  136 (157)
Q Consensus        64 ~~~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~F~~-~~wv~~~~~~-~~~~~l~~i~~~l~~~~~~---~~~~~~~~~~-  136 (157)
                      +...++|.|-.|+|||||| ..+.+.  .  .-+. ++++.+++.. ...++++.+...=......   ...+.....+ 
T Consensus       161 rGQR~~Ifg~~g~GKT~Lal~~I~~q--~--~~dv~~V~~~IGeR~rev~e~i~~l~~~~~l~~tvvV~atsd~p~~~r~  236 (497)
T TIGR03324       161 RGQRELILGDRQTGKTAIAIDTILNQ--K--GRNVLCIYCAIGQRASAVAKVVANLREHGAMDYTIVVVTEGNDPPGLQY  236 (497)
T ss_pred             cCCEEEeecCCCCCHHHHHHHHHHHh--c--CCCcEEEEEEeccCcHHHHHHHHHhhhcCCcceeEEEEeCCCCCHHHHH
Confidence            4567899999999999996 577773  2  2344 6788888764 4566777666542211100   0011111121 


Q ss_pred             ----HHHHHHHHh--cCCcEEEEeeCC
Q 045087          137 ----KKIILHEYL--MTKRYLIVIDDV  157 (157)
Q Consensus       137 ----~~~~l~~~L--~~kr~LlVlDdV  157 (157)
                          ....+.+++  +++.+|||+||+
T Consensus       237 ~ap~~a~aiAEyfrd~G~~VLlv~Ddl  263 (497)
T TIGR03324       237 IAPYAATSIGEHFMEQGRDVLIVYDDL  263 (497)
T ss_pred             HHHHHHHHHHHHHHhCCCCEEEEEcCh
Confidence                122344455  688999999995

A small number of taxonomically diverse prokaryotic species, including Methanosarcina barkeri, have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 alpha subunit of this apparent second ATP synthase.

>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=96.92  E-value=0.0012  Score=52.37  Aligned_cols=48  Identities=21%  Similarity=0.213  Sum_probs=37.4

Q ss_pred             CCCCccccHHHHHHHHHHHhc----------CCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087           40 KSRDTVGLDDRMEELLDLLIE----------GPPQLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        40 ~~~~~vGr~~~~~~l~~~L~~----------~~~~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      .-+++.|.++..+-|.+.+.-          .....+-|.++|++|.|||.||++|+.
T Consensus       210 kW~DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGKTlLAKAvAT  267 (491)
T KOG0738|consen  210 KWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGKTLLAKAVAT  267 (491)
T ss_pred             ChHhhcchHHHHHHHHHHHhhhhhhHHHHhhcccccceeeeeCCCCCcHHHHHHHHHH
Confidence            346788888888777776532          124567889999999999999999998

>CHL00059 atpA ATP synthase CF1 alpha subunit

Probab=96.92  E-value=0.0045  Score=50.68  Aligned_cols=90  Identities=16%  Similarity=0.093  Sum_probs=51.1

Q ss_pred             CceEEEEEeCCCCcHHHHH-HHHhcCcccccccCe-eEEEEcCCCC-CHHHHHHHHHHHhCCCCCC---cccccccHHHH
Q 045087           64 QLSAVTILDSIGLDKTAFA-AEAYSSNYMKHYFDC-HAWVQEPYTC-YADQILDIIIKFLMPSSRL---SEIKDKNYEMK  137 (157)
Q Consensus        64 ~~~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~F~~-~~wv~~~~~~-~~~~~l~~i~~~l~~~~~~---~~~~~~~~~~~  137 (157)
                      +...++|.|-.|+|||+|| ..+.+.  .  .-+. ++++.+++.. ...++++.+...=......   ...+.....+.
T Consensus       140 rGQR~~I~g~~g~GKt~Lal~~I~~q--~--~~dv~cV~~~IGer~rev~e~~~~l~~~~~l~~tvvV~atad~~~~~r~  215 (485)
T CHL00059        140 RGQRELIIGDRQTGKTAVATDTILNQ--K--GQNVICVYVAIGQKASSVAQVVTTLQERGAMEYTIVVAETADSPATLQY  215 (485)
T ss_pred             cCCEEEeecCCCCCHHHHHHHHHHhc--c--cCCeEEEEEEecCCchHHHHHHHHhhcccchhceEEEEeCCCCCHHHHH
Confidence            3567899999999999996 556552  1  2243 4777887654 4566776666432111100   00111111211


Q ss_pred             -----HHHHHHHh--cCCcEEEEeeCC
Q 045087          138 -----KIILHEYL--MTKRYLIVIDDV  157 (157)
Q Consensus       138 -----~~~l~~~L--~~kr~LlVlDdV  157 (157)
                           ...+.+++  +++.+|||+||+
T Consensus       216 ~ap~~a~aiAEyfr~~G~~VLlv~Ddl  242 (485)
T CHL00059        216 LAPYTGAALAEYFMYRGRHTLIIYDDL  242 (485)
T ss_pred             HHHHHHhhHHHHHHHcCCCEEEEEcCh
Confidence                 12233343  588999999995

>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=96.92  E-value=0.0065  Score=49.91  Aligned_cols=24  Identities=17%  Similarity=0.256  Sum_probs=21.4

Q ss_pred             CceEEEEEeCCCCcHHHHHHHHhc
Q 045087           64 QLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        64 ~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      +..+++++|..|+||||++..++.
T Consensus       255 ~g~Vi~LvGpnGvGKTTTiaKLA~  278 (484)
T PRK06995        255 RGGVFALMGPTGVGKTTTTAKLAA  278 (484)
T ss_pred             CCcEEEEECCCCccHHHHHHHHHH
Confidence            357999999999999999988876

>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]

Probab=96.91  E-value=0.014  Score=47.07  Aligned_cols=70  Identities=21%  Similarity=0.180  Sum_probs=42.8

Q ss_pred             HHHHHHHHhcC-------CCCceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEE-EEc-CCCCCHHHHHHHHHHHhC
Q 045087           51 MEELLDLLIEG-------PPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAW-VQE-PYTCYADQILDIIIKFLM  121 (157)
Q Consensus        51 ~~~l~~~L~~~-------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~w-v~~-~~~~~~~~~l~~i~~~l~  121 (157)
                      .++|.++|-..       .....+|.++|.-|.||||.|-++..  .+++ ....+- |++ ...+...+=|+.++.+++
T Consensus        79 ~eELv~llG~~~~~~~l~~~~P~vImmvGLQGsGKTTt~~KLA~--~lkk-~~~kvllVaaD~~RpAA~eQL~~La~q~~  155 (451)
T COG0541          79 YEELVKLLGGENSELNLAKKPPTVILMVGLQGSGKTTTAGKLAK--YLKK-KGKKVLLVAADTYRPAAIEQLKQLAEQVG  155 (451)
T ss_pred             HHHHHHHhCCCCcccccCCCCCeEEEEEeccCCChHhHHHHHHH--HHHH-cCCceEEEecccCChHHHHHHHHHHHHcC
Confidence            46677777532       13467899999999999999988877  3443 222222 222 122334455666777766


Q ss_pred             CC
Q 045087          122 PS  123 (157)
Q Consensus       122 ~~  123 (157)
                      .+
T Consensus       156 v~  157 (451)
T COG0541         156 VP  157 (451)
T ss_pred             Cc
Confidence            53

>PLN02348 phosphoribulokinase

Probab=96.91  E-value=0.0081  Score=48.01  Aligned_cols=25  Identities=16%  Similarity=0.186  Sum_probs=22.8

Q ss_pred             CCceEEEEEeCCCCcHHHHHHHHhc
Q 045087           63 PQLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        63 ~~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ++..+|+|.|.+|.||||+|+.+.+
T Consensus        47 ~~p~IIGIaG~SGSGKSTfA~~L~~   71 (395)
T PLN02348         47 DGTVVIGLAADSGCGKSTFMRRLTS   71 (395)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHH
Confidence            4578999999999999999999987

>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome

Probab=96.91  E-value=0.011  Score=41.56  Aligned_cols=25  Identities=12%  Similarity=0.034  Sum_probs=22.0

Q ss_pred             CceEEEEEeCCCCcHHHHHHHHhcC
Q 045087           64 QLSAVTILDSIGLDKTAFAAEAYSS   88 (157)
Q Consensus        64 ~~~vi~I~G~gGiGKTtLa~~v~~~   88 (157)
                      ...+++|+|..|.|||||++.+..-
T Consensus        26 ~Ge~~~i~G~nGsGKSTLl~~l~G~   50 (166)
T cd03223          26 PGDRLLITGPSGTGKSSLFRALAGL   50 (166)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcC
Confidence            3458999999999999999999884

The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt

>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases

Probab=96.90  E-value=0.00083  Score=44.06  Aligned_cols=22  Identities=18%  Similarity=0.385  Sum_probs=19.6

Q ss_pred             EEEEeCCCCcHHHHHHHHhcCc
Q 045087           68 VTILDSIGLDKTAFAAEAYSSN   89 (157)
Q Consensus        68 i~I~G~gGiGKTtLa~~v~~~~   89 (157)
                      |.|+|..|+|||||.+.+....
T Consensus         2 I~V~G~~g~GKTsLi~~l~~~~   23 (119)
T PF08477_consen    2 IVVLGDSGVGKTSLIRRLCGGE   23 (119)
T ss_dssp             EEEECSTTSSHHHHHHHHHHSS
T ss_pred             EEEECcCCCCHHHHHHHHhcCC
Confidence            6899999999999999998754

They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.

>PRK13975 thymidylate kinase; Provisional

Probab=96.90  E-value=0.00085  Score=48.21  Aligned_cols=22  Identities=18%  Similarity=-0.029  Sum_probs=20.4

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhc
Q 045087           66 SAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        66 ~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ..|.|.|+.|+||||+|+.+.+
T Consensus         3 ~~I~ieG~~GsGKtT~~~~L~~   24 (196)
T PRK13975          3 KFIVFEGIDGSGKTTQAKLLAE   24 (196)
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4789999999999999999988

>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=96.90  E-value=0.0097  Score=51.38  Aligned_cols=23  Identities=17%  Similarity=0.255  Sum_probs=20.7

Q ss_pred             ceEEEEEeCCCCcHHHHHHHHhc
Q 045087           65 LSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        65 ~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ..+++++|+.|+||||++.++..
T Consensus       185 g~Vi~lVGpnGvGKTTTiaKLA~  207 (767)
T PRK14723        185 GGVLALVGPTGVGKTTTTAKLAA  207 (767)
T ss_pred             CeEEEEECCCCCcHHHHHHHHHh
Confidence            47999999999999999988876

>cd01878 HflX HflX subfamily

Probab=96.89  E-value=0.0032  Score=45.41  Aligned_cols=26  Identities=8%  Similarity=0.176  Sum_probs=22.4

Q ss_pred             CceEEEEEeCCCCcHHHHHHHHhcCc
Q 045087           64 QLSAVTILDSIGLDKTAFAAEAYSSN   89 (157)
Q Consensus        64 ~~~vi~I~G~gGiGKTtLa~~v~~~~   89 (157)
                      ....|+|+|.+|+|||||...+....
T Consensus        40 ~~~~I~iiG~~g~GKStLl~~l~~~~   65 (204)
T cd01878          40 GIPTVALVGYTNAGKSTLFNALTGAD   65 (204)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHhcch
Confidence            35689999999999999999888753

A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.

>PRK05595 replicative DNA helicase; Provisional

Probab=96.89  E-value=0.012  Score=47.87  Aligned_cols=72  Identities=15%  Similarity=0.063  Sum_probs=42.0

Q ss_pred             cccHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCCCCCHHHHHHHHHHHh
Q 045087           45 VGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPYTCYADQILDIIIKFL  120 (157)
Q Consensus        45 vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~l~~i~~~l  120 (157)
                      .|.......|-+++ .+-....++.|-|.+|+|||++|..+..+...+... .++|++.  ..+..++...++...
T Consensus       182 ~gi~tg~~~ld~~~-~G~~~g~liviaarpg~GKT~~al~ia~~~a~~~g~-~vl~fSl--Ems~~~l~~R~~a~~  253 (444)
T PRK05595        182 TGVASGFRELDAKT-SGFQKGDMILIAARPSMGKTTFALNIAEYAALREGK-SVAIFSL--EMSKEQLAYKLLCSE  253 (444)
T ss_pred             CcccCChHHHHHhc-CCCCCCcEEEEEecCCCChHHHHHHHHHHHHHHcCC-cEEEEec--CCCHHHHHHHHHHHh
Confidence            34444445554433 333445688888999999999998887632222222 3455554  335556666655544

>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family

Probab=96.89  E-value=0.00062  Score=47.53  Aligned_cols=20  Identities=15%  Similarity=0.248  Sum_probs=18.0

Q ss_pred             EEEEeCCCCcHHHHHHHHhc
Q 045087           68 VTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        68 i~I~G~gGiGKTtLa~~v~~   87 (157)
                      +.++|++|+||||+|+.+.+
T Consensus         1 i~l~G~~GsGKSTla~~l~~   20 (163)
T TIGR01313         1 FVLMGVAGSGKSTIASALAH   20 (163)
T ss_pred             CEEECCCCCCHHHHHHHHHH
Confidence            46889999999999999887

This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.

>PRK10733 hflB ATP-dependent metalloprotease; Reviewed

Probab=96.89  E-value=0.0037  Score=53.23  Aligned_cols=46  Identities=24%  Similarity=0.226  Sum_probs=32.2

Q ss_pred             CCccccHHHHHHHHHHHhcC----------CCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087           42 RDTVGLDDRMEELLDLLIEG----------PPQLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        42 ~~~vGr~~~~~~l~~~L~~~----------~~~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      .++.|.+...++|.+.+...          ..-.+-+.++|.+|+|||++|+.+..
T Consensus       152 ~di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~  207 (644)
T PRK10733        152 ADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAG  207 (644)
T ss_pred             HHHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHH
Confidence            34667777776666554321          01123488999999999999999988

>PRK13946 shikimate kinase; Provisional

Probab=96.88  E-value=0.00089  Score=47.94  Aligned_cols=23  Identities=13%  Similarity=0.235  Sum_probs=20.8

Q ss_pred             ceEEEEEeCCCCcHHHHHHHHhc
Q 045087           65 LSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        65 ~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      .+.|.++|++|+||||+++.+.+
T Consensus        10 ~~~I~l~G~~GsGKsti~~~LA~   32 (184)
T PRK13946         10 KRTVVLVGLMGAGKSTVGRRLAT   32 (184)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHH
Confidence            35799999999999999999987

>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]

Probab=96.88  E-value=0.0025  Score=50.25  Aligned_cols=52  Identities=19%  Similarity=0.235  Sum_probs=41.2

Q ss_pred             CCCCCccccHHHHHH---HHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhcCcccc
Q 045087           39 SKSRDTVGLDDRMEE---LLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSSNYMK   92 (157)
Q Consensus        39 ~~~~~~vGr~~~~~~---l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~   92 (157)
                      .....+||..+..+.   +.+++.++.-..+.|.++|++|.|||+||-.+.+  ++.
T Consensus        36 ~~~dG~VGQ~~AReAaGvIv~mik~gk~aGrgiLi~GppgTGKTAlA~gIa~--eLG   90 (450)
T COG1224          36 FIGDGLVGQEEAREAAGVIVKMIKQGKMAGRGILIVGPPGTGKTALAMGIAR--ELG   90 (450)
T ss_pred             EcCCcccchHHHHHhhhHHHHHHHhCcccccEEEEECCCCCcHHHHHHHHHH--HhC
Confidence            345789998887766   4666666655668899999999999999999988  454

>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=96.88  E-value=0.0016  Score=48.62  Aligned_cols=24  Identities=17%  Similarity=0.152  Sum_probs=21.2

Q ss_pred             CceEEEEEeCCCCcHHHHHHHHhc
Q 045087           64 QLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        64 ~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ...+++|+|.+|+|||||++.+..
T Consensus        32 ~Ge~lgivGeSGsGKSTL~r~l~G   55 (252)
T COG1124          32 RGETLGIVGESGSGKSTLARLLAG   55 (252)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhc
Confidence            346899999999999999999855

>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A

Probab=96.88  E-value=0.022  Score=44.99  Aligned_cols=50  Identities=14%  Similarity=0.050  Sum_probs=37.0

Q ss_pred             CceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCCCC-CHHHHHHHHH
Q 045087           64 QLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPYTC-YADQILDIII  117 (157)
Q Consensus        64 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~-~~~~~l~~i~  117 (157)
                      +...++|.|..|+|||+|+..+.++.    +-+.++++.++... ...+++..+-
T Consensus       156 kGqr~~I~G~~G~GKT~L~~~Iak~~----~~dvvVyv~iGERg~Ev~e~l~ef~  206 (369)
T cd01134         156 KGGTAAIPGPFGCGKTVIQQSLSKYS----NSDIVIYVGCGERGNEMTEVLEEFP  206 (369)
T ss_pred             CCCEEEEECCCCCChHHHHHHHHhCC----CCCEEEEEEeCCChHHHHHHHHHHH
Confidence            34588999999999999999998842    23578888887654 3556666653

These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.

>CHL00081 chlI Mg-protoporyphyrin IX chelatase

Probab=96.88  E-value=0.0014  Score=51.74  Aligned_cols=47  Identities=17%  Similarity=0.183  Sum_probs=37.4

Q ss_pred             CCCCCccccHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087           39 SKSRDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        39 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      .+-+.+||.++.+..|...+.+.  +..-+.|.|..|+||||+|+.+++
T Consensus        14 ~pf~~ivGq~~~k~al~~~~~~p--~~~~vli~G~~GtGKs~~ar~~~~   60 (350)
T CHL00081         14 FPFTAIVGQEEMKLALILNVIDP--KIGGVMIMGDRGTGKSTTIRALVD   60 (350)
T ss_pred             CCHHHHhChHHHHHHHHHhccCC--CCCeEEEEcCCCCCHHHHHHHHHH
Confidence            34578999999888887666554  345577999999999999999865

>PRK13973 thymidylate kinase; Provisional

Probab=96.88  E-value=0.0074  Score=44.22  Aligned_cols=23  Identities=13%  Similarity=-0.002  Sum_probs=20.9

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhcC
Q 045087           66 SAVTILDSIGLDKTAFAAEAYSS   88 (157)
Q Consensus        66 ~vi~I~G~gGiGKTtLa~~v~~~   88 (157)
                      ..|+|-|..|+||||+++.++..
T Consensus         4 ~~IviEG~dGsGKtTq~~~l~~~   26 (213)
T PRK13973          4 RFITFEGGEGAGKSTQIRLLAER   26 (213)
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHH
Confidence            57889999999999999999883

>PRK07133 DNA polymerase III subunits gamma and tau; Validated

Probab=96.86  E-value=0.0018  Score=55.48  Aligned_cols=46  Identities=22%  Similarity=0.174  Sum_probs=38.3

Q ss_pred             CCCccccHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087           41 SRDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        41 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ..+++|.+..++.|.+++..+. -.+.+.++|+.|+||||+|+.+..
T Consensus        17 f~dIiGQe~~v~~L~~aI~~~r-l~HAYLF~GP~GtGKTt~AriLAk   62 (725)
T PRK07133         17 FDDIVGQDHIVQTLKNIIKSNK-ISHAYLFSGPRGTGKTSVAKIFAN   62 (725)
T ss_pred             HHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCcHHHHHHHHHH
Confidence            4678999999999999997753 244567899999999999998876

>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B

Probab=96.85  E-value=0.0017  Score=50.33  Aligned_cols=22  Identities=23%  Similarity=0.080  Sum_probs=18.5

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhc
Q 045087           66 SAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        66 ~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      +++.+.|-||+||||+|.++.-
T Consensus         2 r~~~~~GKGGVGKTT~aaA~A~   23 (305)
T PF02374_consen    2 RILFFGGKGGVGKTTVAAALAL   23 (305)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHH
T ss_pred             eEEEEecCCCCCcHHHHHHHHH
Confidence            5788999999999999966543

...

>PRK04196 V-type ATP synthase subunit B; Provisional

Probab=96.85  E-value=0.0057  Score=50.02  Aligned_cols=93  Identities=16%  Similarity=0.176  Sum_probs=56.1

Q ss_pred             CceEEEEEeCCCCcHHHHHHHHhcCcccc---cccCeeEEEEcCCCC-CHHHHHHHHHHHhCCCCCC---cccccccHH-
Q 045087           64 QLSAVTILDSIGLDKTAFAAEAYSSNYMK---HYFDCHAWVQEPYTC-YADQILDIIIKFLMPSSRL---SEIKDKNYE-  135 (157)
Q Consensus        64 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~---~~F~~~~wv~~~~~~-~~~~~l~~i~~~l~~~~~~---~~~~~~~~~-  135 (157)
                      +-..++|.|-.|+|||+|+..+.++....   +.| .++++.+++.. ...++++.+...=......   ...+..... 
T Consensus       142 ~GQR~gIfgg~G~GKs~L~~~ia~~~~~d~~~~~~-v~V~~~iGeRgrEv~e~~~~~~~~~~l~rtvvV~atsd~p~~~R  220 (460)
T PRK04196        142 RGQKLPIFSGSGLPHNELAAQIARQAKVLGEEENF-AVVFAAMGITFEEANFFMEDFEETGALERSVVFLNLADDPAIER  220 (460)
T ss_pred             CCCEEEeeCCCCCCccHHHHHHHHhhhhccCCCce-EEEEEEeccccHHHHHHHHHHHhcCCcceEEEEEEcCCCCHHHH
Confidence            35678899999999999998888853321   112 56777787654 4667777776542111100   001111111 


Q ss_pred             ----HHHHHHHHHhc---CCcEEEEeeCC
Q 045087          136 ----MKKIILHEYLM---TKRYLIVIDDV  157 (157)
Q Consensus       136 ----~~~~~l~~~L~---~kr~LlVlDdV  157 (157)
                          .....+.++++   ++++||++||+
T Consensus       221 ~~a~~~a~tiAEyfr~d~G~~VLli~Dsl  249 (460)
T PRK04196        221 ILTPRMALTAAEYLAFEKGMHVLVILTDM  249 (460)
T ss_pred             HHHHHHHHHHHHHHHHhcCCcEEEEEcCh
Confidence                22344566665   48999999985

>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]

Probab=96.84  E-value=0.0045  Score=45.39  Aligned_cols=49  Identities=14%  Similarity=-0.096  Sum_probs=34.2

Q ss_pred             ceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCCCCCHHHHHHH
Q 045087           65 LSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPYTCYADQILDI  115 (157)
Q Consensus        65 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~l~~  115 (157)
                      ...|+|-|.-|+||||.++.+++  .++.....++|..-+.....-+.+..
T Consensus         3 g~fI~iEGiDGaGKTT~~~~L~~--~l~~~g~~v~~trEP~~~~ige~iR~   51 (208)
T COG0125           3 GMFIVIEGIDGAGKTTQAELLKE--RLEERGIKVVLTREPGGTPIGEKIRE   51 (208)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH--HHHHcCCeEEEEeCCCCChHHHHHHH
Confidence            45789999999999999999999  56655445566655555333343333

>PRK05057 aroK shikimate kinase I; Reviewed

Probab=96.84  E-value=0.001  Score=47.15  Aligned_cols=22  Identities=9%  Similarity=0.277  Sum_probs=20.1

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhc
Q 045087           66 SAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        66 ~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ..|.|+|+.|.||||+++.+..
T Consensus         5 ~~I~liG~~GaGKStl~~~La~   26 (172)
T PRK05057          5 RNIFLVGPMGAGKSTIGRQLAQ   26 (172)
T ss_pred             CEEEEECCCCcCHHHHHHHHHH
Confidence            4689999999999999999986

>PF13521 AAA_28: AAA domain; PDB: 1LW7_A

Probab=96.84  E-value=0.00083  Score=46.97  Aligned_cols=20  Identities=15%  Similarity=0.137  Sum_probs=16.8

Q ss_pred             EEEEeCCCCcHHHHHHHHhc
Q 045087           68 VTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        68 i~I~G~gGiGKTtLa~~v~~   87 (157)
                      |+|+|..|+|||||+..+..
T Consensus         2 I~i~G~~stGKTTL~~~L~~   21 (163)
T PF13521_consen    2 IVITGGPSTGKTTLIEALAA   21 (163)
T ss_dssp             EEEE--TTSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            78999999999999999987

>TIGR00750 lao LAO/AO transport system ATPase

Probab=96.83  E-value=0.0034  Score=48.50  Aligned_cols=36  Identities=19%  Similarity=0.191  Sum_probs=27.1

Q ss_pred             HHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087           52 EELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        52 ~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ..+.+.+........+++|+|.+|+|||||+..+..
T Consensus        21 ~~~~~~~~~~~~~~~~i~i~G~~G~GKttl~~~l~~   56 (300)
T TIGR00750        21 KQLLDRIMPYTGNAHRVGITGTPGAGKSTLLEALGM   56 (300)
T ss_pred             HHHHHhCCcccCCceEEEEECCCCCCHHHHHHHHHH
Confidence            334444444345678999999999999999988876

Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.

>PRK07399 DNA polymerase III subunit delta'; Validated

Probab=96.83  E-value=0.0088  Score=46.59  Aligned_cols=45  Identities=13%  Similarity=0.059  Sum_probs=37.6

Q ss_pred             CCccccHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087           42 RDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        42 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      .+++|.+..++.|.+.+..+. -.+...++|..|+||+++|..+.+
T Consensus         4 ~~iiGq~~~~~~L~~~i~~~r-l~ha~Lf~G~~G~Gk~~~A~~~a~   48 (314)
T PRK07399          4 ANLIGQPLAIELLTAAIKQNR-IAPAYLFAGPEGVGRKLAALCFIE   48 (314)
T ss_pred             HHhCCHHHHHHHHHHHHHhCC-CCceEEEECCCCCCHHHHHHHHHH
Confidence            468999999999999887753 246888999999999999977755

>COG1157 FliI Flagellar biosynthesis/type III secretory pathway ATPase [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=96.83  E-value=0.0079  Score=48.19  Aligned_cols=100  Identities=13%  Similarity=0.142  Sum_probs=61.2

Q ss_pred             HHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcC-CCCCHHHHHHHHHHHhCCCCCCc---
Q 045087           52 EELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEP-YTCYADQILDIIIKFLMPSSRLS---  127 (157)
Q Consensus        52 ~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~-~~~~~~~~l~~i~~~l~~~~~~~---  127 (157)
                      ..|--+|.-+  ....++|..-+|+|||||...+++.    ..++..+-.-++ +.....+++++.+..-+.....-   
T Consensus       152 RaIDgllT~G--~GQRiGIFAgsGVGKStLLgMiar~----t~aDv~ViaLIGERGREVrEFIE~~Lg~egl~rsViVvA  225 (441)
T COG1157         152 RAIDGLLTCG--KGQRIGIFAGSGVGKSTLLGMIARN----TEADVNVIALIGERGREVREFIEKDLGEEGLKRSVVVVA  225 (441)
T ss_pred             eeeecccccc--cCceeEEEecCCCcHHHHHHHHhcc----ccCCEEEEEEeeccchhHHHHHHHhcchhhccceEEEEE
Confidence            3343444333  3457999999999999999999883    334544433343 44567888888776654322110   


Q ss_pred             ccccccH-----HHHHHHHHHHh--cCCcEEEEeeCC
Q 045087          128 EIKDKNY-----EMKKIILHEYL--MTKRYLIVIDDV  157 (157)
Q Consensus       128 ~~~~~~~-----~~~~~~l~~~L--~~kr~LlVlDdV  157 (157)
                      ..+....     ......+.+++  ++|++||++|.|
T Consensus       226 TSD~s~l~R~~aa~~At~IAEyFRDqG~~VLL~mDSl  262 (441)
T COG1157         226 TSDESALMRLKAAFTATTIAEYFRDQGKRVLLIMDSL  262 (441)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHhCCCeEEEEeecH
Confidence            0112222     23355566777  578999999974

>TIGR00962 atpA proton translocating ATP synthase, F1 alpha subunit

Probab=96.83  E-value=0.0056  Score=50.54  Aligned_cols=90  Identities=18%  Similarity=0.136  Sum_probs=52.8

Q ss_pred             CceEEEEEeCCCCcHHHHH-HHHhcCcccccccCe-eEEEEcCCCC-CHHHHHHHHHHHhCCCCCC---cccccccHHH-
Q 045087           64 QLSAVTILDSIGLDKTAFA-AEAYSSNYMKHYFDC-HAWVQEPYTC-YADQILDIIIKFLMPSSRL---SEIKDKNYEM-  136 (157)
Q Consensus        64 ~~~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~F~~-~~wv~~~~~~-~~~~~l~~i~~~l~~~~~~---~~~~~~~~~~-  136 (157)
                      +...++|.|..|+|||+|| ..+.+.    ...+. ++++.+++.. ...++++.+...=......   ...+.....+ 
T Consensus       160 rGQr~~I~g~~g~GKt~Lal~~i~~~----~~~dv~~V~~~IGer~rev~e~~~~~~~~~~l~~tvvV~atsd~p~~~r~  235 (501)
T TIGR00962       160 RGQRELIIGDRQTGKTAVAIDTIINQ----KDSDVYCVYVAIGQKASTVAQVVRKLEEHGAMDYTIVVAATASDSASLQY  235 (501)
T ss_pred             cCCEEEeecCCCCCccHHHHHHHHhh----cCCCeEEEEEEccCChHHHHHHHHHHHhcCccceeEEEEecCCCCHHHHH
Confidence            4567899999999999996 666662    13355 4788888765 4566777766532111100   0011111111 


Q ss_pred             ----HHHHHHHHh--cCCcEEEEeeCC
Q 045087          137 ----KKIILHEYL--MTKRYLIVIDDV  157 (157)
Q Consensus       137 ----~~~~l~~~L--~~kr~LlVlDdV  157 (157)
                          ....+.+++  +++.+||++||+
T Consensus       236 ~a~~~a~aiAEyfrd~G~~VLlv~Ddl  262 (501)
T TIGR00962       236 LAPYTGCTMAEYFRDNGKHALIIYDDL  262 (501)
T ss_pred             HHHHHHHHHHHHHHHcCCCEEEEecch
Confidence                122233444  578999999995

The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. The alpha-subunit contains a highly conserved adenine-specific noncatalytic nucleotide-binding domain. The conserved amino acid sequence is Gly-X-X-X-X-Gly-Lys. Proton translocating ATP synthase F1, alpha subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), B subunit.

>PLN02318 phosphoribulokinase/uridine kinase

Probab=96.82  E-value=0.0019  Score=54.15  Aligned_cols=27  Identities=19%  Similarity=0.250  Sum_probs=23.7

Q ss_pred             CCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087           61 GPPQLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        61 ~~~~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ......+|+|.|.+|.||||||+.+..
T Consensus        61 ~~~~riIIGIaGpSGSGKTTLAk~Lag   87 (656)
T PLN02318         61 KNDGIILVGVAGPSGAGKTVFTEKVLN   87 (656)
T ss_pred             cCCCeEEEEEECCCCCcHHHHHHHHHh
Confidence            444678999999999999999999977

>PRK07960 fliI flagellum-specific ATP synthase; Validated

Probab=96.82  E-value=0.0045  Score=50.35  Aligned_cols=24  Identities=8%  Similarity=0.138  Sum_probs=21.5

Q ss_pred             CceEEEEEeCCCCcHHHHHHHHhc
Q 045087           64 QLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        64 ~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      +...++|.|..|+|||||++.+..
T Consensus       174 ~Gqri~I~G~sG~GKTTLL~~Ia~  197 (455)
T PRK07960        174 RGQRMGLFAGSGVGKSVLLGMMAR  197 (455)
T ss_pred             CCcEEEEECCCCCCccHHHHHHhC
Confidence            456899999999999999998887

>PRK14737 gmk guanylate kinase; Provisional

Probab=96.81  E-value=0.0017  Score=46.72  Aligned_cols=25  Identities=12%  Similarity=0.052  Sum_probs=21.9

Q ss_pred             CceEEEEEeCCCCcHHHHHHHHhcC
Q 045087           64 QLSAVTILDSIGLDKTAFAAEAYSS   88 (157)
Q Consensus        64 ~~~vi~I~G~gGiGKTtLa~~v~~~   88 (157)
                      ...++.|+|++|+|||||++.+...
T Consensus         3 ~~~~ivl~GpsG~GK~tl~~~l~~~   27 (186)
T PRK14737          3 SPKLFIISSVAGGGKSTIIQALLEE   27 (186)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHhc
Confidence            3568999999999999999999873

>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals

Probab=96.81  E-value=0.0079  Score=46.51  Aligned_cols=72  Identities=10%  Similarity=0.064  Sum_probs=45.6

Q ss_pred             HHHHHHHHHHHhcCC-CCceEEEEEeCCCCcHHHHHHHHhcCcccccc---cCeeEEEE----cCCCCCHHHHHHHHHHH
Q 045087           48 DDRMEELLDLLIEGP-PQLSAVTILDSIGLDKTAFAAEAYSSNYMKHY---FDCHAWVQ----EPYTCYADQILDIIIKF  119 (157)
Q Consensus        48 ~~~~~~l~~~L~~~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~---F~~~~wv~----~~~~~~~~~~l~~i~~~  119 (157)
                      +.-.+.|.+.+.... ....+|+|.|.=|+|||++.+.+.+  ++.+.   --..+|++    -....-...++..|..+
T Consensus         2 ~~~a~~la~~I~~~~~~~~~~IgL~G~WGsGKSs~l~~l~~--~L~~~~~~~~~~i~fn~w~~~~~~~~~~~~~~~l~~~   79 (325)
T PF07693_consen    2 KPYAKALAEIIKNPDSDDPFVIGLYGEWGSGKSSFLNMLKE--ELKEDNKEKYIFIYFNAWEYDGEDDLWASFLEELFDQ   79 (325)
T ss_pred             hHHHHHHHHHHhccCCCCCeEEEEECCCCCCHHHHHHHHHH--HHhcccccceeeEEEccccCCCcchHHHHHHHHHHHH
Confidence            344567777777643 5678999999999999999999988  44443   11223333    22222344556666665


Q ss_pred             hC
Q 045087          120 LM  121 (157)
Q Consensus       120 l~  121 (157)
                      +.
T Consensus        80 l~   81 (325)
T PF07693_consen   80 LE   81 (325)
T ss_pred             HH
Confidence            54

Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].

>TIGR02655 circ_KaiC circadian clock protein KaiC

Probab=96.81  E-value=0.0043  Score=51.08  Aligned_cols=61  Identities=16%  Similarity=0.146  Sum_probs=40.4

Q ss_pred             HHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCCCCCHHHHHHHH
Q 045087           53 ELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPYTCYADQILDII  116 (157)
Q Consensus        53 ~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~l~~i  116 (157)
                      .|-++|..+-.+.+.+.|.|.+|+||||+|.++... -.++.=+.++|+++..  +..++.+..
T Consensus         9 gLD~il~GGlp~g~~~Li~G~pGsGKT~la~qfl~~-g~~~~ge~~lyvs~eE--~~~~l~~~~   69 (484)
T TIGR02655         9 GFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYN-GIIHFDEPGVFVTFEE--SPQDIIKNA   69 (484)
T ss_pred             hHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHH-HHHhCCCCEEEEEEec--CHHHHHHHH
Confidence            344455555566789999999999999999877441 2232225788888754  445555543

Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.

>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length

Probab=96.80  E-value=0.0028  Score=49.80  Aligned_cols=46  Identities=15%  Similarity=0.315  Sum_probs=39.9

Q ss_pred             CCccccHHHHHHHHHHHhcC----CCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087           42 RDTVGLDDRMEELLDLLIEG----PPQLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        42 ~~~vGr~~~~~~l~~~L~~~----~~~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ..|+|.++.+++|.+.+...    +.+.+++.+.|+.|.||||||..+-+
T Consensus        61 ~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~  110 (358)
T PF08298_consen   61 DEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKR  110 (358)
T ss_pred             ccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHH
Confidence            47999999999999988542    35678999999999999999998876

PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.

>PRK04182 cytidylate kinase; Provisional

Probab=96.79  E-value=0.0012  Score=46.57  Aligned_cols=21  Identities=29%  Similarity=0.183  Sum_probs=19.8

Q ss_pred             EEEEEeCCCCcHHHHHHHHhc
Q 045087           67 AVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        67 vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      +|.|.|++|+||||+|+.+..
T Consensus         2 ~I~i~G~~GsGKstia~~la~   22 (180)
T PRK04182          2 IITISGPPGSGKTTVARLLAE   22 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999999987

>PRK14527 adenylate kinase; Provisional

Probab=96.79  E-value=0.0012  Score=47.40  Aligned_cols=24  Identities=21%  Similarity=0.136  Sum_probs=21.1

Q ss_pred             CceEEEEEeCCCCcHHHHHHHHhc
Q 045087           64 QLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        64 ~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ...++.|+|.+|.||||+|+.+.+
T Consensus         5 ~~~~i~i~G~pGsGKsT~a~~La~   28 (191)
T PRK14527          5 KNKVVIFLGPPGAGKGTQAERLAQ   28 (191)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            356899999999999999998875

>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]

Probab=96.79  E-value=0.01  Score=47.75  Aligned_cols=35  Identities=11%  Similarity=0.009  Sum_probs=24.8

Q ss_pred             EEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCCC
Q 045087           67 AVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPYT  106 (157)
Q Consensus        67 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~  106 (157)
                      ++.|+|+.++||||+++.+..  ...+.   .+++...+.
T Consensus        39 i~~i~GpR~~GKTtll~~l~~--~~~~~---~iy~~~~d~   73 (398)
T COG1373          39 IILILGPRQVGKTTLLKLLIK--GLLEE---IIYINFDDL   73 (398)
T ss_pred             EEEEECCccccHHHHHHHHHh--hCCcc---eEEEEecch
Confidence            999999999999999966655  22222   566655443

>PRK03731 aroL shikimate kinase II; Reviewed

Probab=96.78  E-value=0.0011  Score=46.72  Aligned_cols=22  Identities=14%  Similarity=0.179  Sum_probs=19.7

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhc
Q 045087           66 SAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        66 ~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ..+.|+|++|+||||+|+.+.+
T Consensus         3 ~~i~~~G~~GsGKst~~~~la~   24 (171)
T PRK03731          3 QPLFLVGARGCGKTTVGMALAQ   24 (171)
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            3578899999999999999987

>PF03215 Rad17: Rad17 cell cycle checkpoint protein

Probab=96.78  E-value=0.0024  Score=52.98  Aligned_cols=46  Identities=17%  Similarity=0.157  Sum_probs=36.3

Q ss_pred             CCccccHHHHHHHHHHHhc---CCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087           42 RDTVGLDDRMEELLDLLIE---GPPQLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        42 ~~~vGr~~~~~~l~~~L~~---~~~~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      .+++--.+-++++..||..   +....+++.++|++|+||||.++.+++
T Consensus        19 ~eLavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~   67 (519)
T PF03215_consen   19 DELAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAK   67 (519)
T ss_pred             HHhhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHH
Confidence            3455556778899999964   233457899999999999999999987

>PRK08760 replicative DNA helicase; Provisional

Probab=96.77  E-value=0.013  Score=48.24  Aligned_cols=71  Identities=17%  Similarity=0.111  Sum_probs=40.2

Q ss_pred             cccHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCCCCCHHHHHHHHHHH
Q 045087           45 VGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPYTCYADQILDIIIKF  119 (157)
Q Consensus        45 vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~l~~i~~~  119 (157)
                      .|...-...|-+++ .+-....++.|.|.+|+|||++|..+..+...+... .++++++  ..+..++...++..
T Consensus       210 ~Gi~TG~~~LD~~t-~G~~~G~LivIaarPg~GKTafal~iA~~~a~~~g~-~V~~fSl--EMs~~ql~~Rl~a~  280 (476)
T PRK08760        210 TGLPTGYNDFDAMT-AGLQPTDLIILAARPAMGKTTFALNIAEYAAIKSKK-GVAVFSM--EMSASQLAMRLISS  280 (476)
T ss_pred             CcccCCcHHHHHHh-cCCCCCceEEEEeCCCCChhHHHHHHHHHHHHhcCC-ceEEEec--cCCHHHHHHHHHHh
Confidence            33344444444432 233455688899999999999998887632222222 3445443  23444555555443

>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF

Probab=96.77  E-value=0.0029  Score=49.53  Aligned_cols=44  Identities=23%  Similarity=0.232  Sum_probs=33.9

Q ss_pred             ccccHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087           44 TVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        44 ~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ++|....+.++.+.+..-......|.|+|..|+||+++|+.+++
T Consensus         1 liG~S~~m~~~~~~~~~~a~~~~pVLI~GE~GtGK~~lAr~iH~   44 (329)
T TIGR02974         1 LIGESNAFLEVLEQVSRLAPLDRPVLIIGERGTGKELIAARLHY   44 (329)
T ss_pred             CCcCCHHHHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHH
Confidence            46777777777777654333345789999999999999999987

Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH

>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis

Probab=96.77  E-value=0.0017  Score=42.55  Aligned_cols=22  Identities=32%  Similarity=0.321  Sum_probs=19.8

Q ss_pred             ceEEEEEeCCCCcHHHHHHHHh
Q 045087           65 LSAVTILDSIGLDKTAFAAEAY   86 (157)
Q Consensus        65 ~~vi~I~G~gGiGKTtLa~~v~   86 (157)
                      ...++|+|.+|.|||||+..+.
T Consensus        15 ge~v~I~GpSGsGKSTLl~~l~   36 (107)
T cd00820          15 KVGVLITGDSGIGKTELALELI   36 (107)
T ss_pred             CEEEEEEcCCCCCHHHHHHHhh
Confidence            4689999999999999999876

It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural

>PLN02200 adenylate kinase family protein

Probab=96.76  E-value=0.0014  Score=48.95  Aligned_cols=23  Identities=13%  Similarity=0.026  Sum_probs=20.7

Q ss_pred             ceEEEEEeCCCCcHHHHHHHHhc
Q 045087           65 LSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        65 ~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ..++.|.|++|+||||+|+.+..
T Consensus        43 ~~ii~I~G~PGSGKsT~a~~La~   65 (234)
T PLN02200         43 PFITFVLGGPGSGKGTQCEKIVE   65 (234)
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            56889999999999999998876

>PRK00698 tmk thymidylate kinase; Validated

Probab=96.75  E-value=0.0045  Score=44.61  Aligned_cols=23  Identities=17%  Similarity=-0.074  Sum_probs=20.9

Q ss_pred             ceEEEEEeCCCCcHHHHHHHHhc
Q 045087           65 LSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        65 ~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ..+|+|.|+.|+||||+++.+.+
T Consensus         3 ~~~I~ieG~~gsGKsT~~~~L~~   25 (205)
T PRK00698          3 GMFITIEGIDGAGKSTQIELLKE   25 (205)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            36899999999999999999887

>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]

Probab=96.74  E-value=0.0013  Score=47.90  Aligned_cols=24  Identities=17%  Similarity=0.256  Sum_probs=21.1

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhcCc
Q 045087           66 SAVTILDSIGLDKTAFAAEAYSSN   89 (157)
Q Consensus        66 ~vi~I~G~gGiGKTtLa~~v~~~~   89 (157)
                      .-|.|+|.+|+|||||+.++.++.
T Consensus         6 ~kivv~G~~g~GKTtl~~~l~~~~   29 (219)
T COG1100           6 FKIVVLGDGGVGKTTLLNRLVGDE   29 (219)
T ss_pred             EEEEEEcCCCccHHHHHHHHhcCc
Confidence            468899999999999999998763

>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP)

Probab=96.74  E-value=0.0012  Score=47.30  Aligned_cols=20  Identities=20%  Similarity=0.180  Sum_probs=18.5

Q ss_pred             EEEEeCCCCcHHHHHHHHhc
Q 045087           68 VTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        68 i~I~G~gGiGKTtLa~~v~~   87 (157)
                      |.|.|++|+||||+|+.+..
T Consensus         2 I~i~G~pGsGKst~a~~La~   21 (194)
T cd01428           2 ILLLGPPGSGKGTQAERLAK   21 (194)
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            68999999999999998877

This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.

>PRK14532 adenylate kinase; Provisional

Probab=96.73  E-value=0.0012  Score=47.23  Aligned_cols=20  Identities=10%  Similarity=0.064  Sum_probs=18.4

Q ss_pred             EEEEeCCCCcHHHHHHHHhc
Q 045087           68 VTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        68 i~I~G~gGiGKTtLa~~v~~   87 (157)
                      |.+.|++|+||||+|+.+..
T Consensus         3 i~~~G~pGsGKsT~a~~la~   22 (188)
T PRK14532          3 LILFGPPAAGKGTQAKRLVE   22 (188)
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            67899999999999998876

>TIGR01650 PD_CobS cobaltochelatase, CobS subunit

Probab=96.72  E-value=0.0051  Score=48.03  Aligned_cols=41  Identities=7%  Similarity=-0.036  Sum_probs=30.6

Q ss_pred             CccccHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087           43 DTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        43 ~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      .++=..+....+..++..+    +.|.|.|.+|+||||+|+.+..
T Consensus        46 ~y~f~~~~~~~vl~~l~~~----~~ilL~G~pGtGKTtla~~lA~   86 (327)
T TIGR01650        46 AYLFDKATTKAICAGFAYD----RRVMVQGYHGTGKSTHIEQIAA   86 (327)
T ss_pred             CccCCHHHHHHHHHHHhcC----CcEEEEeCCCChHHHHHHHHHH
Confidence            3444445556677777553    3689999999999999999977

This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.

>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]

Probab=96.72  E-value=0.0048  Score=51.70  Aligned_cols=51  Identities=24%  Similarity=0.259  Sum_probs=38.6

Q ss_pred             CCCCCccccHHHHHHHHHHHh---cCC-------CCceEEEEEeCCCCcHHHHHHHHhcCc
Q 045087           39 SKSRDTVGLDDRMEELLDLLI---EGP-------PQLSAVTILDSIGLDKTAFAAEAYSSN   89 (157)
Q Consensus        39 ~~~~~~vGr~~~~~~l~~~L~---~~~-------~~~~vi~I~G~gGiGKTtLa~~v~~~~   89 (157)
                      ....++-|.++..++|.+.+.   +..       .-.+-+.++|++|.|||.||+++....
T Consensus       147 v~F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA  207 (596)
T COG0465         147 VTFADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEA  207 (596)
T ss_pred             cChhhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhccc
Confidence            445678999988888877763   221       224568889999999999999999943

>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]

Probab=96.72  E-value=0.0031  Score=45.25  Aligned_cols=25  Identities=8%  Similarity=0.162  Sum_probs=21.9

Q ss_pred             ceEEEEEeCCCCcHHHHHHHHhcCc
Q 045087           65 LSAVTILDSIGLDKTAFAAEAYSSN   89 (157)
Q Consensus        65 ~~vi~I~G~gGiGKTtLa~~v~~~~   89 (157)
                      ..++.|.|++|+|||||++.++.+.
T Consensus         4 G~l~vlsgPSG~GKsTl~k~L~~~~   28 (191)
T COG0194           4 GLLIVLSGPSGVGKSTLVKALLEDD   28 (191)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhhc
Confidence            4578899999999999999999953

>PRK09302 circadian clock protein KaiC; Reviewed

Probab=96.71  E-value=0.0059  Score=50.52  Aligned_cols=63  Identities=19%  Similarity=0.231  Sum_probs=42.2

Q ss_pred             HHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCCCCCHHHHHHHH
Q 045087           51 MEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPYTCYADQILDII  116 (157)
Q Consensus        51 ~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~l~~i  116 (157)
                      +..|-+.|..+-+...++.|.|.+|+|||+||.++... ....+-..++|+++..  +.+++...+
T Consensus        17 I~~LD~~l~GG~p~Gs~~li~G~pGsGKT~l~~qf~~~-~~~~~ge~~lyis~ee--~~~~i~~~~   79 (509)
T PRK09302         17 IEGFDDITHGGLPKGRPTLVSGTAGTGKTLFALQFLVN-GIKRFDEPGVFVTFEE--SPEDIIRNV   79 (509)
T ss_pred             chhHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHH-HHHhcCCCEEEEEccC--CHHHHHHHH
Confidence            34555556555566789999999999999999877542 2222235678888766  444555554

>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]

Probab=96.71  E-value=0.0012  Score=46.41  Aligned_cols=22  Identities=32%  Similarity=0.244  Sum_probs=20.2

Q ss_pred             EEEEEeCCCCcHHHHHHHHhcC
Q 045087           67 AVTILDSIGLDKTAFAAEAYSS   88 (157)
Q Consensus        67 vi~I~G~gGiGKTtLa~~v~~~   88 (157)
                      +|+|-|.+|+||||+|+.+.++
T Consensus         2 ~ItIsG~pGsG~TTva~~lAe~   23 (179)
T COG1102           2 VITISGLPGSGKTTVARELAEH   23 (179)
T ss_pred             EEEeccCCCCChhHHHHHHHHH
Confidence            6889999999999999999884

>TIGR00665 DnaB replicative DNA helicase

Probab=96.71  E-value=0.02  Score=46.40  Aligned_cols=66  Identities=18%  Similarity=0.167  Sum_probs=37.8

Q ss_pred             HHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCCCCCHHHHHHHHHH
Q 045087           49 DRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPYTCYADQILDIIIK  118 (157)
Q Consensus        49 ~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~l~~i~~  118 (157)
                      .....|-+++ .+-....++.|.|.+|+|||++|..+..+...... ..++|+++.-  +..++...++.
T Consensus       180 tG~~~LD~~~-~G~~~G~l~vi~g~pg~GKT~~~l~~a~~~a~~~g-~~vl~~SlEm--~~~~i~~R~~~  245 (434)
T TIGR00665       180 TGFTDLDKLT-SGLQPSDLIILAARPSMGKTAFALNIAENAAIKEG-KPVAFFSLEM--SAEQLAMRMLS  245 (434)
T ss_pred             CCchhhHhhc-CCCCCCeEEEEEeCCCCChHHHHHHHHHHHHHhCC-CeEEEEeCcC--CHHHHHHHHHH
Confidence            3334443333 23344568889999999999999887663222222 2456666443  44444444443

This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.

>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins

Probab=96.70  E-value=0.0039  Score=42.02  Aligned_cols=46  Identities=13%  Similarity=0.147  Sum_probs=32.3

Q ss_pred             CCccccHHHHHHHHHHH----hcC-CCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087           42 RDTVGLDDRMEELLDLL----IEG-PPQLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        42 ~~~vGr~~~~~~l~~~L----~~~-~~~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ..++|..-..+.+.+.+    ... ..+.-|++..|.+|+|||.+++.+.+
T Consensus        25 ~~l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~   75 (127)
T PF06309_consen   25 RNLFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAE   75 (127)
T ss_pred             HHccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHH
Confidence            45777765555555544    332 34567888999999999998877766

Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor

>TIGR02173 cyt_kin_arch cytidylate kinase, putative

Probab=96.70  E-value=0.0015  Score=45.76  Aligned_cols=21  Identities=29%  Similarity=0.188  Sum_probs=19.6

Q ss_pred             EEEEEeCCCCcHHHHHHHHhc
Q 045087           67 AVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        67 vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      +|+|.|.+|+||||+|+.+.+
T Consensus         2 iI~i~G~~GSGKstia~~la~   22 (171)
T TIGR02173         2 IITISGPPGSGKTTVAKILAE   22 (171)
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999999977

Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.

>cd04139 RalA_RalB RalA/RalB subfamily

Probab=96.70  E-value=0.0018  Score=44.58  Aligned_cols=22  Identities=18%  Similarity=0.286  Sum_probs=19.4

Q ss_pred             EEEEEeCCCCcHHHHHHHHhcC
Q 045087           67 AVTILDSIGLDKTAFAAEAYSS   88 (157)
Q Consensus        67 vi~I~G~gGiGKTtLa~~v~~~   88 (157)
                      -|+++|.+|+|||||+..+++.
T Consensus         2 ki~~~G~~~~GKTsl~~~l~~~   23 (164)
T cd04139           2 KVIVVGAGGVGKSALTLQFMYD   23 (164)
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4789999999999999998764

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo

>COG2842 Uncharacterized ATPase, putative transposase [General function prediction only]

Probab=96.69  E-value=0.014  Score=44.72  Aligned_cols=102  Identities=19%  Similarity=0.097  Sum_probs=65.0

Q ss_pred             CCCccccHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEE-EcCCCCCHHHHHHHHHHH
Q 045087           41 SRDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWV-QEPYTCYADQILDIIIKF  119 (157)
Q Consensus        41 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv-~~~~~~~~~~~l~~i~~~  119 (157)
                      ...|+|-... .++..++.......+.+.++|+.|+|||+-++..++.       .+.+|+ ..+..++...++..+...
T Consensus        71 ~~~~l~tkt~-r~~~~~~~~A~k~g~l~~vyg~~g~gKt~a~~~y~~s-------~p~~~l~~~~p~~~a~~~i~~i~~~  142 (297)
T COG2842          71 APDFLETKTV-RRIFFRTRPASKTGSLVVVYGYAGLGKTQAAKNYAPS-------NPNALLIEADPSYTALVLILIICAA  142 (297)
T ss_pred             cccccccchh-HhHhhhhhhhhhcCceEEEeccccchhHHHHHhhccc-------CccceeecCChhhHHHHHHHHHHHH
Confidence            4556665443 2333444333333458899999999999999988872       234554 455666777777777766


Q ss_pred             hCCCCCCcccccccHHHHHHHHHHHhcCCcEEEEeeC
Q 045087          120 LMPSSRLSEIKDKNYEMKKIILHEYLMTKRYLIVIDD  156 (157)
Q Consensus       120 l~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDd  156 (157)
                      +....      ..+.-+....+...+++..-+++.|+
T Consensus       143 ~~~~~------~~~~~d~~~~~~~~l~~~~~~iivDE  173 (297)
T COG2842         143 AFGAT------DGTINDLTERLMIRLRDTVRLIIVDE  173 (297)
T ss_pred             Hhccc------chhHHHHHHHHHHHHccCcceeeeeh
Confidence            66533      23345566666666777777777775

>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A

Probab=96.68  E-value=0.0042  Score=45.02  Aligned_cols=36  Identities=17%  Similarity=0.216  Sum_probs=26.3

Q ss_pred             HHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087           49 DRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        49 ~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ++.+.+...+.++   .++..|.|.+|.||||++..+..
T Consensus         5 ~Q~~a~~~~l~~~---~~~~~l~G~aGtGKT~~l~~~~~   40 (196)
T PF13604_consen    5 EQREAVRAILTSG---DRVSVLQGPAGTGKTTLLKALAE   40 (196)
T ss_dssp             HHHHHHHHHHHCT---CSEEEEEESTTSTHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcC---CeEEEEEECCCCCHHHHHHHHHH
Confidence            3445555555443   35788899999999999988876

>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]

Probab=96.67  E-value=0.0012  Score=46.36  Aligned_cols=23  Identities=13%  Similarity=0.137  Sum_probs=20.8

Q ss_pred             ceEEEEEeCCCCcHHHHHHHHhc
Q 045087           65 LSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        65 ~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      .++++|+|+.++|||||..++..
T Consensus         2 ~~Il~ivG~k~SGKTTLie~lv~   24 (161)
T COG1763           2 MKILGIVGYKNSGKTTLIEKLVR   24 (161)
T ss_pred             CcEEEEEecCCCChhhHHHHHHH
Confidence            46899999999999999999855

>PRK08356 hypothetical protein; Provisional

Probab=96.67  E-value=0.0019  Score=46.66  Aligned_cols=21  Identities=24%  Similarity=0.140  Sum_probs=19.1

Q ss_pred             ceEEEEEeCCCCcHHHHHHHH
Q 045087           65 LSAVTILDSIGLDKTAFAAEA   85 (157)
Q Consensus        65 ~~vi~I~G~gGiGKTtLa~~v   85 (157)
                      ..++.|+|++|+||||+|+.+
T Consensus         5 ~~~i~~~G~~gsGK~t~a~~l   25 (195)
T PRK08356          5 KMIVGVVGKIAAGKTTVAKFF   25 (195)
T ss_pred             cEEEEEECCCCCCHHHHHHHH
Confidence            357899999999999999988

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=96.66  E-value=0.002  Score=43.42  Aligned_cols=24  Identities=17%  Similarity=0.109  Sum_probs=21.4

Q ss_pred             ceEEEEEeCCCCcHHHHHHHHhcC
Q 045087           65 LSAVTILDSIGLDKTAFAAEAYSS   88 (157)
Q Consensus        65 ~~vi~I~G~gGiGKTtLa~~v~~~   88 (157)
                      ..+++|+|..|+|||||.+.++..
T Consensus        11 g~~~~i~G~nGsGKStLl~~l~g~   34 (137)
T PF00005_consen   11 GEIVAIVGPNGSGKSTLLKALAGL   34 (137)
T ss_dssp             TSEEEEEESTTSSHHHHHHHHTTS
T ss_pred             CCEEEEEccCCCccccceeeeccc
Confidence            358999999999999999999774

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]

Probab=96.66  E-value=0.0017  Score=47.31  Aligned_cols=23  Identities=17%  Similarity=0.205  Sum_probs=20.1

Q ss_pred             ceEEEEEeCCCCcHHHHHHHHhc
Q 045087           65 LSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        65 ~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ..+|+|+|+.|+||||+|+.+-+
T Consensus         2 ~~iIglTG~igsGKStva~~~~~   24 (201)
T COG0237           2 MLIIGLTGGIGSGKSTVAKILAE   24 (201)
T ss_pred             ceEEEEecCCCCCHHHHHHHHHH
Confidence            46899999999999999997655

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=96.66  E-value=0.0032  Score=46.38  Aligned_cols=24  Identities=17%  Similarity=0.158  Sum_probs=21.0

Q ss_pred             CceEEEEEeCCCCcHHHHHHHHhc
Q 045087           64 QLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        64 ~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      +..+++|+|++|.|||||.+.+-.
T Consensus        27 ~Gevv~iiGpSGSGKSTlLRclN~   50 (240)
T COG1126          27 KGEVVVIIGPSGSGKSTLLRCLNG   50 (240)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHC
Confidence            346999999999999999998855

>PRK09281 F0F1 ATP synthase subunit alpha; Validated

Probab=96.66  E-value=0.0066  Score=50.11  Aligned_cols=90  Identities=19%  Similarity=0.101  Sum_probs=50.8

Q ss_pred             CceEEEEEeCCCCcHHHHH-HHHhcCcccccccCe-eEEEEcCCCCC-HHHHHHHHHHHhCCCCCC---cccccccHHHH
Q 045087           64 QLSAVTILDSIGLDKTAFA-AEAYSSNYMKHYFDC-HAWVQEPYTCY-ADQILDIIIKFLMPSSRL---SEIKDKNYEMK  137 (157)
Q Consensus        64 ~~~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~F~~-~~wv~~~~~~~-~~~~l~~i~~~l~~~~~~---~~~~~~~~~~~  137 (157)
                      +...++|.|..|+|||+|| ..+.+.  .  .-+. ++++.+++..+ ..++++.+...=......   ...+....+..
T Consensus       161 rGQr~~Ifg~~g~GKt~lal~~i~~~--~--~~dv~~V~~~IGer~~ev~e~~~~~~~~~~l~~tvvv~atsd~p~~~r~  236 (502)
T PRK09281        161 RGQRELIIGDRQTGKTAIAIDTIINQ--K--GKDVICIYVAIGQKASTVAQVVRKLEEHGAMEYTIVVAATASDPAPLQY  236 (502)
T ss_pred             cCcEEEeecCCCCCchHHHHHHHHHh--c--CCCeEEEEEEecCChHHHHHHHHHHhhcCCccceEEEEeCCCCCHHHHH
Confidence            4567899999999999995 555542  2  2344 47788877654 556666665432111100   00111122211


Q ss_pred             -----HHHHHHHh--cCCcEEEEeeCC
Q 045087          138 -----KIILHEYL--MTKRYLIVIDDV  157 (157)
Q Consensus       138 -----~~~l~~~L--~~kr~LlVlDdV  157 (157)
                           ...+.+++  +++.+|||+||+
T Consensus       237 ~a~~~a~tiAEyfrd~G~~VLli~Ddl  263 (502)
T PRK09281        237 LAPYAGCAMGEYFMDNGKDALIVYDDL  263 (502)
T ss_pred             HHHHHHHHHHHHHHHcCCCEEEEecCc
Confidence                 22233343  488999999996

>PRK09825 idnK D-gluconate kinase; Provisional

Probab=96.65  E-value=0.0017  Score=46.34  Aligned_cols=22  Identities=9%  Similarity=0.191  Sum_probs=20.3

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhc
Q 045087           66 SAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        66 ~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      .++.|+|.+|.|||||++.++.
T Consensus         4 e~i~l~G~sGsGKSTl~~~la~   25 (176)
T PRK09825          4 ESYILMGVSGSGKSLIGSKIAA   25 (176)
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            4789999999999999999987

>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]

Probab=96.65  E-value=0.0046  Score=46.80  Aligned_cols=46  Identities=22%  Similarity=0.188  Sum_probs=34.6

Q ss_pred             CccccHHHHHHHHHHHhcC-----------CCCceEEEEEeCCCCcHHHHHHHHhcC
Q 045087           43 DTVGLDDRMEELLDLLIEG-----------PPQLSAVTILDSIGLDKTAFAAEAYSS   88 (157)
Q Consensus        43 ~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~gGiGKTtLa~~v~~~   88 (157)
                      ++-|.+-+.+++.+.+.-.           -+..+-+.++|++|.|||.||+++.++
T Consensus       156 diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~  212 (408)
T KOG0727|consen  156 DIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANH  212 (408)
T ss_pred             ccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhc
Confidence            4667777777777665321           134567889999999999999999995

>PRK13976 thymidylate kinase; Provisional

Probab=96.65  E-value=0.0065  Score=44.56  Aligned_cols=25  Identities=20%  Similarity=0.134  Sum_probs=21.4

Q ss_pred             EEEEEeCCCCcHHHHHHHHhcCccccc
Q 045087           67 AVTILDSIGLDKTAFAAEAYSSNYMKH   93 (157)
Q Consensus        67 vi~I~G~gGiGKTtLa~~v~~~~~~~~   93 (157)
                      .|+|-|.-|+||||+++.+++  ..+.
T Consensus         2 fIv~EGiDGsGKsTq~~~L~~--~L~~   26 (209)
T PRK13976          2 FITFEGIDGSGKTTQSRLLAE--YLSD   26 (209)
T ss_pred             EEEEECCCCCCHHHHHHHHHH--HHHH
Confidence            578899999999999999998  4444

>PRK13343 F0F1 ATP synthase subunit alpha; Provisional

Probab=96.64  E-value=0.006  Score=50.28  Aligned_cols=90  Identities=18%  Similarity=0.129  Sum_probs=52.5

Q ss_pred             CceEEEEEeCCCCcHHHHH-HHHhcCcccccccCe-eEEEEcCCCCC-HHHHHHHHHHHhCCCCCC---cccccccHHHH
Q 045087           64 QLSAVTILDSIGLDKTAFA-AEAYSSNYMKHYFDC-HAWVQEPYTCY-ADQILDIIIKFLMPSSRL---SEIKDKNYEMK  137 (157)
Q Consensus        64 ~~~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~F~~-~~wv~~~~~~~-~~~~l~~i~~~l~~~~~~---~~~~~~~~~~~  137 (157)
                      +...++|.|..|+|||+|| ..+.+.    ..-+. ++++.+++..+ ..++++.+...=......   ...+.....+.
T Consensus       161 rGQR~~I~g~~g~GKt~Lal~~i~~~----~~~dv~~V~~~IGer~rev~e~~~~l~~~~~l~~tvvV~atsd~~~~~r~  236 (502)
T PRK13343        161 RGQRELIIGDRQTGKTAIAIDAIINQ----KDSDVICVYVAIGQKASAVARVIETLREHGALEYTTVVVAEASDPPGLQY  236 (502)
T ss_pred             cCCEEEeeCCCCCCccHHHHHHHHhh----cCCCEEEEEEEeccChHHHHHHHHHHHhcCccceeEEEEecccccHHHHH
Confidence            4567899999999999996 666652    22344 47778877654 566666665432111100   00111122221


Q ss_pred             -----HHHHHHHh--cCCcEEEEeeCC
Q 045087          138 -----KIILHEYL--MTKRYLIVIDDV  157 (157)
Q Consensus       138 -----~~~l~~~L--~~kr~LlVlDdV  157 (157)
                           ...+.+++  +++.+|||+||+
T Consensus       237 ~ap~~a~aiAEyfrd~G~~VLlv~Ddl  263 (502)
T PRK13343        237 LAPFAGCAIAEYFRDQGQDALIVYDDL  263 (502)
T ss_pred             HHHHHHHHHHHHHHhCCCCEEEEecch
Confidence                 12344454  688999999995

>PHA02530 pseT polynucleotide kinase; Provisional

Probab=96.64  E-value=0.0017  Score=49.78  Aligned_cols=22  Identities=18%  Similarity=0.219  Sum_probs=19.8

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhc
Q 045087           66 SAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        66 ~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      .++.++|.+|+||||+|+.+..
T Consensus         3 ~liil~G~pGSGKSTla~~L~~   24 (300)
T PHA02530          3 KIILTVGVPGSGKSTWAREFAA   24 (300)
T ss_pred             EEEEEEcCCCCCHHHHHHHHHH
Confidence            5788899999999999998876

>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]

Probab=96.64  E-value=0.0047  Score=46.68  Aligned_cols=43  Identities=23%  Similarity=0.298  Sum_probs=33.8

Q ss_pred             ccHHHHHHHHHHHhcC-----------CCCceEEEEEeCCCCcHHHHHHHHhcC
Q 045087           46 GLDDRMEELLDLLIEG-----------PPQLSAVTILDSIGLDKTAFAAEAYSS   88 (157)
Q Consensus        46 Gr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~gGiGKTtLa~~v~~~   88 (157)
                      |.+.+++++.+.+.-.           -.+.+-+.++|++|.|||-||++++++
T Consensus       151 gLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahh  204 (404)
T KOG0728|consen  151 GLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHH  204 (404)
T ss_pred             cHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhh
Confidence            4688888888876422           134567889999999999999999994

>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse

Probab=96.64  E-value=0.0021  Score=42.18  Aligned_cols=21  Identities=14%  Similarity=0.224  Sum_probs=19.4

Q ss_pred             EEEEeCCCCcHHHHHHHHhcC
Q 045087           68 VTILDSIGLDKTAFAAEAYSS   88 (157)
Q Consensus        68 i~I~G~gGiGKTtLa~~v~~~   88 (157)
                      |+|+|++|+|||||...++..
T Consensus         2 V~iiG~~~~GKSTlin~l~~~   22 (116)
T PF01926_consen    2 VAIIGRPNVGKSTLINALTGK   22 (116)
T ss_dssp             EEEEESTTSSHHHHHHHHHTS
T ss_pred             EEEECCCCCCHHHHHHHHhcc
Confidence            789999999999999999974

These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=96.63  E-value=0.0018  Score=48.42  Aligned_cols=23  Identities=22%  Similarity=0.140  Sum_probs=20.6

Q ss_pred             ceEEEEEeCCCCcHHHHHHHHhc
Q 045087           65 LSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        65 ~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      .-.++|+|.+|+|||||.+.+..
T Consensus        29 GEfvsilGpSGcGKSTLLriiAG   51 (248)
T COG1116          29 GEFVAILGPSGCGKSTLLRLIAG   51 (248)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhC
Confidence            45999999999999999999855

>smart00072 GuKc Guanylate kinase homologues

Probab=96.63  E-value=0.0025  Score=45.63  Aligned_cols=24  Identities=17%  Similarity=0.236  Sum_probs=21.2

Q ss_pred             ceEEEEEeCCCCcHHHHHHHHhcC
Q 045087           65 LSAVTILDSIGLDKTAFAAEAYSS   88 (157)
Q Consensus        65 ~~vi~I~G~gGiGKTtLa~~v~~~   88 (157)
                      .+++.|+|++|+||+||+..+...
T Consensus         2 ~r~ivl~Gpsg~GK~tl~~~L~~~   25 (184)
T smart00072        2 RRPIVLSGPSGVGKGTLLAELIQE   25 (184)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHhc
Confidence            357899999999999999999883

Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.

>PTZ00494 tuzin-like protein; Provisional

Probab=96.62  E-value=0.03  Score=45.85  Aligned_cols=79  Identities=15%  Similarity=0.101  Sum_probs=57.2

Q ss_pred             CCCCCCccccHHHHHHHHHHHhc-CCCCceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCCCCCHHHHHHHH
Q 045087           38 SSKSRDTVGLDDRMEELLDLLIE-GPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPYTCYADQILDII  116 (157)
Q Consensus        38 ~~~~~~~vGr~~~~~~l~~~L~~-~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~l~~i  116 (157)
                      ......++.|+.+-.-+...|.. +....+++.+.|..|.||++|.+...+...     -..+||.+...   ++-+..+
T Consensus       367 ~a~~~~~V~R~~eE~~vRqvL~qld~aHPRIvV~TG~~GcGKSslcRsAvrkE~-----~paV~VDVRg~---EDtLrsV  438 (664)
T PTZ00494        367 AAAEAFEVRREDEEALVRSVLTQMAPSHPRIVALAGGSGGGRCVPCRRAVRVEG-----VALVHVDVGGT---EDTLRSV  438 (664)
T ss_pred             ccccccccchhhHHHHHHHHHhhccCCCCcEEEEecCCCCCchHHHHHHHHHcC-----CCeEEEEecCC---cchHHHH
Confidence            35667899998887777777754 345678999999999999999987776322     24667776654   3456677


Q ss_pred             HHHhCCCC
Q 045087          117 IKFLMPSS  124 (157)
Q Consensus       117 ~~~l~~~~  124 (157)
                      ...++.+.
T Consensus       439 VKALgV~n  446 (664)
T PTZ00494        439 VRALGVSN  446 (664)
T ss_pred             HHHhCCCC
Confidence            77777654

>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional

Probab=96.62  E-value=0.0028  Score=50.35  Aligned_cols=29  Identities=10%  Similarity=0.067  Sum_probs=23.9

Q ss_pred             CceEEEEEeCCCCcHHHHHHHHhcCcccccc
Q 045087           64 QLSAVTILDSIGLDKTAFAAEAYSSNYMKHY   94 (157)
Q Consensus        64 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~   94 (157)
                      +..++.|+|..|+|||||+..+..  ..+.+
T Consensus         4 ~~~~i~i~G~~gsGKTTl~~~l~~--~l~~~   32 (369)
T PRK14490          4 HPFEIAFCGYSGSGKTTLITALVR--RLSER   32 (369)
T ss_pred             CCEEEEEEeCCCCCHHHHHHHHHH--HHhhC
Confidence            356999999999999999999987  44433

>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]

Probab=96.61  E-value=0.0022  Score=48.88  Aligned_cols=32  Identities=16%  Similarity=0.167  Sum_probs=24.6

Q ss_pred             CCceEEEEEeCCCCcHHHHHHHHhcCcccccccC
Q 045087           63 PQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFD   96 (157)
Q Consensus        63 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~   96 (157)
                      ++...|.++||.|.||||..++++.+  +...+.
T Consensus        17 ~~p~~ilVvGMAGSGKTTF~QrL~~h--l~~~~~   48 (366)
T KOG1532|consen   17 QRPVIILVVGMAGSGKTTFMQRLNSH--LHAKKT   48 (366)
T ss_pred             cCCcEEEEEecCCCCchhHHHHHHHH--HhhccC
Confidence            34567778899999999999999884  444443

>TIGR00073 hypB hydrogenase accessory protein HypB

Probab=96.61  E-value=0.0021  Score=46.81  Aligned_cols=25  Identities=20%  Similarity=0.256  Sum_probs=22.8

Q ss_pred             CCceEEEEEeCCCCcHHHHHHHHhc
Q 045087           63 PQLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        63 ~~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      .+.++++++|..|+|||||..++.+
T Consensus        20 ~~~~~i~~~G~~gsGKTTli~~l~~   44 (207)
T TIGR00073        20 HGLVVLNFMSSPGSGKTTLIEKLID   44 (207)
T ss_pred             cCcEEEEEECCCCCCHHHHHHHHHH
Confidence            3689999999999999999998877

HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=96.60  E-value=0.0039  Score=45.55  Aligned_cols=24  Identities=17%  Similarity=0.144  Sum_probs=21.5

Q ss_pred             ceEEEEEeCCCCcHHHHHHHHhcC
Q 045087           65 LSAVTILDSIGLDKTAFAAEAYSS   88 (157)
Q Consensus        65 ~~vi~I~G~gGiGKTtLa~~v~~~   88 (157)
                      ..+++|+|..|.|||||++.++.-
T Consensus        29 Ge~~~i~G~nGsGKSTLl~~l~Gl   52 (216)
T TIGR00960        29 GEMVFLVGHSGAGKSTFLKLILGI   52 (216)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            468999999999999999999773

>smart00487 DEXDc DEAD-like helicases superfamily

Probab=96.59  E-value=0.02  Score=40.02  Aligned_cols=22  Identities=23%  Similarity=0.152  Sum_probs=17.5

Q ss_pred             eEEEEEeCCCCcHHH-HHHHHhc
Q 045087           66 SAVTILDSIGLDKTA-FAAEAYS   87 (157)
Q Consensus        66 ~vi~I~G~gGiGKTt-La~~v~~   87 (157)
                      ..+.|.|..|.|||+ ++..+++
T Consensus        25 ~~~~i~~~~GsGKT~~~~~~~~~   47 (201)
T smart00487       25 RDVILAAPTGSGKTLAALLPALE   47 (201)
T ss_pred             CcEEEECCCCCchhHHHHHHHHH
Confidence            578899999999999 5555555

>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH)

Probab=96.59  E-value=0.0095  Score=39.58  Aligned_cols=20  Identities=30%  Similarity=0.273  Sum_probs=18.4

Q ss_pred             EEEEeCCCCcHHHHHHHHhc
Q 045087           68 VTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        68 i~I~G~gGiGKTtLa~~v~~   87 (157)
                      +.+.|.||+||||++..+..
T Consensus         2 i~~~GkgG~GKTt~a~~la~   21 (116)
T cd02034           2 IAITGKGGVGKTTIAALLAR   21 (116)
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            67899999999999998877

CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.

>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed

Probab=96.59  E-value=0.004  Score=48.31  Aligned_cols=24  Identities=8%  Similarity=0.166  Sum_probs=21.6

Q ss_pred             CceEEEEEeCCCCcHHHHHHHHhc
Q 045087           64 QLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        64 ~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ....|.++|++|+||||+++.+..
T Consensus       132 ~~~~I~l~G~~GsGKStvg~~La~  155 (309)
T PRK08154        132 RRRRIALIGLRGAGKSTLGRMLAA  155 (309)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHH
Confidence            456899999999999999999877

>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB

Probab=96.59  E-value=0.0016  Score=45.56  Aligned_cols=21  Identities=14%  Similarity=0.164  Sum_probs=19.4

Q ss_pred             EEEEEeCCCCcHHHHHHHHhc
Q 045087           67 AVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        67 vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ++.|+|+.|+|||||+.++..
T Consensus         1 vi~i~G~~gsGKTtl~~~l~~   21 (155)
T TIGR00176         1 VLQIVGPKNSGKTTLIERLVK   21 (155)
T ss_pred             CEEEECCCCCCHHHHHHHHHH
Confidence            478999999999999999988

This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.

>PRK14531 adenylate kinase; Provisional

Probab=96.57  E-value=0.002  Score=46.09  Aligned_cols=21  Identities=24%  Similarity=0.208  Sum_probs=19.2

Q ss_pred             EEEEEeCCCCcHHHHHHHHhc
Q 045087           67 AVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        67 vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      .|.|+|++|.||||+++.+..
T Consensus         4 ~i~i~G~pGsGKsT~~~~la~   24 (183)
T PRK14531          4 RLLFLGPPGAGKGTQAARLCA   24 (183)
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            588999999999999998877

>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2

Probab=96.57  E-value=0.0016  Score=46.42  Aligned_cols=21  Identities=19%  Similarity=0.213  Sum_probs=18.9

Q ss_pred             EEEEEeCCCCcHHHHHHHHhc
Q 045087           67 AVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        67 vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      +|+|+|+.|+||||+++.+.+
T Consensus         1 ii~itG~~gsGKst~~~~l~~   21 (179)
T cd02022           1 IIGLTGGIGSGKSTVAKLLKE   21 (179)
T ss_pred             CEEEECCCCCCHHHHHHHHHH
Confidence            478999999999999998865

7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.

>PLN02796 D-glycerate 3-kinase

Probab=96.57  E-value=0.007  Score=47.62  Aligned_cols=24  Identities=17%  Similarity=0.068  Sum_probs=21.8

Q ss_pred             CceEEEEEeCCCCcHHHHHHHHhc
Q 045087           64 QLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        64 ~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ..-+++|.|..|+|||||++.+..
T Consensus        99 ~pliIGI~G~sGSGKSTLa~~L~~  122 (347)
T PLN02796         99 PPLVIGISAPQGCGKTTLVFALVY  122 (347)
T ss_pred             CCEEEEEECCCCCcHHHHHHHHHH
Confidence            457899999999999999999987

>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional

Probab=96.56  E-value=0.0025  Score=48.71  Aligned_cols=28  Identities=11%  Similarity=0.055  Sum_probs=23.3

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhcCccccccc
Q 045087           66 SAVTILDSIGLDKTAFAAEAYSSNYMKHYF   95 (157)
Q Consensus        66 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F   95 (157)
                      ++++|+|.+|+|||||+..+..  .++++.
T Consensus         2 ~~i~i~G~~gSGKTTLi~~Li~--~L~~~G   29 (274)
T PRK14493          2 KVLSIVGYKATGKTTLVERLVD--RLSGRG   29 (274)
T ss_pred             cEEEEECCCCCCHHHHHHHHHH--HHHhCC
Confidence            5799999999999999999988  554443

>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity

Probab=96.56  E-value=0.0025  Score=47.72  Aligned_cols=19  Identities=21%  Similarity=0.293  Sum_probs=16.6

Q ss_pred             EEeCCCCcHHHHHHHHhcC
Q 045087           70 ILDSIGLDKTAFAAEAYSS   88 (157)
Q Consensus        70 I~G~gGiGKTtLa~~v~~~   88 (157)
                      |+|++|+||||+++.+.+.
T Consensus         1 ViGpaGSGKTT~~~~~~~~   19 (238)
T PF03029_consen    1 VIGPAGSGKTTFCKGLSEW   19 (238)
T ss_dssp             -EESTTSSHHHHHHHHHHH
T ss_pred             CCCCCCCCHHHHHHHHHHH
Confidence            6899999999999999884

; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.

>PRK09165 replicative DNA helicase; Provisional

Probab=96.56  E-value=0.025  Score=46.86  Aligned_cols=39  Identities=18%  Similarity=0.174  Sum_probs=26.1

Q ss_pred             HHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087           48 DDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        48 ~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ..-...|-+++ .+-....++.|-|.+|+|||++|..+..
T Consensus       201 ~TG~~~LD~~~-gG~~~g~livIaarpg~GKT~~al~ia~  239 (497)
T PRK09165        201 STGLRDLDSKL-GGLHPSDLIILAGRPSMGKTALATNIAF  239 (497)
T ss_pred             cCChHHHhhhc-CCCCCCceEEEEeCCCCChHHHHHHHHH
Confidence            33344444433 2334456888899999999999977655

>PF13245 AAA_19: Part of AAA domain

Probab=96.56  E-value=0.0052  Score=37.70  Aligned_cols=23  Identities=17%  Similarity=0.073  Sum_probs=16.7

Q ss_pred             ceEEEEEeCCCCcHHHHH-HHHhc
Q 045087           65 LSAVTILDSIGLDKTAFA-AEAYS   87 (157)
Q Consensus        65 ~~vi~I~G~gGiGKTtLa-~~v~~   87 (157)
                      .+++.|.|.+|.|||+++ ..+.+
T Consensus        10 ~~~~vv~g~pGtGKT~~~~~~i~~   33 (76)
T PF13245_consen   10 SPLFVVQGPPGTGKTTTLAARIAE   33 (76)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHH
Confidence            346778999999999544 55444

>PRK01184 hypothetical protein; Provisional

Probab=96.55  E-value=0.0022  Score=45.69  Aligned_cols=21  Identities=14%  Similarity=0.216  Sum_probs=17.7

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhc
Q 045087           66 SAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        66 ~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      .+|+|+|++|+||||+|+ ++.
T Consensus         2 ~~i~l~G~~GsGKsT~a~-~~~   22 (184)
T PRK01184          2 KIIGVVGMPGSGKGEFSK-IAR   22 (184)
T ss_pred             cEEEEECCCCCCHHHHHH-HHH
Confidence            478999999999999987 444

>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases

Probab=96.55  E-value=0.0057  Score=43.81  Aligned_cols=23  Identities=17%  Similarity=0.183  Sum_probs=20.4

Q ss_pred             ceEEEEEeCCCCcHHHHHHHHhc
Q 045087           65 LSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        65 ~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ...+.|+|..|.||||+++.+..
T Consensus        25 g~~i~I~G~tGSGKTTll~aL~~   47 (186)
T cd01130          25 RKNILISGGTGSGKTTLLNALLA   47 (186)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHh
Confidence            35899999999999999998876

The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.

>cd01858 NGP_1 NGP-1

Probab=96.55  E-value=0.0068  Score=42.08  Aligned_cols=44  Identities=11%  Similarity=0.073  Sum_probs=28.8

Q ss_pred             ccHHHHHHHHHHHhcCC-CCceEEEEEeCCCCcHHHHHHHHhcCc
Q 045087           46 GLDDRMEELLDLLIEGP-PQLSAVTILDSIGLDKTAFAAEAYSSN   89 (157)
Q Consensus        46 Gr~~~~~~l~~~L~~~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~   89 (157)
                      |.+.-++.|.+.+.... .....++++|++|+|||||...+..+.
T Consensus        82 ~~~~L~~~l~~~~~~~~~~~~~~v~~~G~~nvGKStliN~l~~~~  126 (157)
T cd01858          82 GKGSLIQLLRQFSKLHSDKKQISVGFIGYPNVGKSSIINTLRSKK  126 (157)
T ss_pred             cHHHHHHHHHHHHhhhccccceEEEEEeCCCCChHHHHHHHhcCC
Confidence            44444555554432111 124567899999999999999998753

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=96.55  E-value=0.0044  Score=45.29  Aligned_cols=24  Identities=17%  Similarity=0.041  Sum_probs=21.4

Q ss_pred             ceEEEEEeCCCCcHHHHHHHHhcC
Q 045087           65 LSAVTILDSIGLDKTAFAAEAYSS   88 (157)
Q Consensus        65 ~~vi~I~G~gGiGKTtLa~~v~~~   88 (157)
                      ..+++|+|..|.|||||++.++.-
T Consensus        30 G~~~~l~G~nGsGKSTLl~~i~Gl   53 (218)
T cd03255          30 GEFVAIVGPSGSGKSTLLNILGGL   53 (218)
T ss_pred             CCEEEEEcCCCCCHHHHHHHHhCC
Confidence            458999999999999999999763

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>cd01125 repA Hexameric Replicative Helicase RepA

Probab=96.54  E-value=0.017  Score=43.01  Aligned_cols=21  Identities=10%  Similarity=0.055  Sum_probs=18.2

Q ss_pred             EEEEEeCCCCcHHHHHHHHhc
Q 045087           67 AVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        67 vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      +..|+|++|+|||+||..++-
T Consensus         3 ~~ll~g~~G~GKS~lal~la~   23 (239)
T cd01125           3 VSALVAPGGTGKSSLLLVLAL   23 (239)
T ss_pred             eeEEEcCCCCCHHHHHHHHHH
Confidence            567889999999999988865

RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.

>PRK13768 GTPase; Provisional

Probab=96.54  E-value=0.0038  Score=47.05  Aligned_cols=22  Identities=23%  Similarity=0.226  Sum_probs=19.1

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhc
Q 045087           66 SAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        66 ~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      .++.|.|.+|+||||++..+..
T Consensus         3 ~~i~v~G~~G~GKTt~~~~~~~   24 (253)
T PRK13768          3 YIVFFLGTAGSGKTTLTKALSD   24 (253)
T ss_pred             EEEEEECCCCccHHHHHHHHHH
Confidence            5788999999999999877765

>TIGR00455 apsK adenylylsulfate kinase (apsK)

Probab=96.53  E-value=0.0027  Score=45.32  Aligned_cols=24  Identities=13%  Similarity=0.040  Sum_probs=21.7

Q ss_pred             CceEEEEEeCCCCcHHHHHHHHhc
Q 045087           64 QLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        64 ~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ...++.|.|.+|.||||+|+.+..
T Consensus        17 ~~~~i~i~G~~GsGKstla~~l~~   40 (184)
T TIGR00455        17 RGVVIWLTGLSGSGKSTIANALEK   40 (184)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            457999999999999999999887

Important residue (active site in E.coli) is residue 100 of the seed alignment.

>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]

Probab=96.53  E-value=0.0054  Score=47.29  Aligned_cols=46  Identities=20%  Similarity=0.221  Sum_probs=36.2

Q ss_pred             CCccccHHHHHHHHHHHhcC-----------CCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087           42 RDTVGLDDRMEELLDLLIEG-----------PPQLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        42 ~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      .++=|.+.++++|.+-+.-.           -...+-|-+||.+|.|||-||++|++
T Consensus       185 ~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVAN  241 (440)
T KOG0726|consen  185 ADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVAN  241 (440)
T ss_pred             cccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhc
Confidence            45667899999998877432           12345677899999999999999999

>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=96.53  E-value=0.02  Score=43.68  Aligned_cols=23  Identities=17%  Similarity=0.300  Sum_probs=20.4

Q ss_pred             ceEEEEEeCCCCcHHHHHHHHhc
Q 045087           65 LSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        65 ~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ...++++|.+|+||||++..+..
T Consensus        75 ~~~i~~~G~~g~GKTtl~~~l~~   97 (270)
T PRK06731         75 VQTIALIGPTGVGKTTTLAKMAW   97 (270)
T ss_pred             CCEEEEECCCCCcHHHHHHHHHH
Confidence            46999999999999999987765

>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]

Probab=96.52  E-value=0.0049  Score=47.76  Aligned_cols=30  Identities=20%  Similarity=0.190  Sum_probs=24.9

Q ss_pred             CceEEEEEeCCCCcHHHHHHHHhcCccccccc
Q 045087           64 QLSAVTILDSIGLDKTAFAAEAYSSNYMKHYF   95 (157)
Q Consensus        64 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F   95 (157)
                      ....++|||++|.|||-+|+.|+.  .+.-.|
T Consensus       165 ~Pkg~ll~GppGtGKTlla~~Vaa--~mg~nf  194 (388)
T KOG0651|consen  165 PPKGLLLYGPPGTGKTLLARAVAA--TMGVNF  194 (388)
T ss_pred             CCceeEEeCCCCCchhHHHHHHHH--hcCCce
Confidence            356899999999999999999998  554444

>TIGR01420 pilT_fam pilus retraction protein PilT

Probab=96.52  E-value=0.0034  Score=49.41  Aligned_cols=23  Identities=13%  Similarity=0.128  Sum_probs=20.8

Q ss_pred             ceEEEEEeCCCCcHHHHHHHHhc
Q 045087           65 LSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        65 ~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ...+.|.|..|.||||++..+.+
T Consensus       122 ~g~ili~G~tGSGKTT~l~al~~  144 (343)
T TIGR01420       122 RGLILVTGPTGSGKSTTLASMID  144 (343)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999998877

This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.

>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]

Probab=96.52  E-value=0.0071  Score=47.38  Aligned_cols=114  Identities=18%  Similarity=0.133  Sum_probs=65.6

Q ss_pred             CCCCccccHHHHHHHHHHHhcC--CCCceEEEEEeCCCCcHHHHHHHHhcC-cccccccCeeEEEEcCCCC-CHHHHHHH
Q 045087           40 KSRDTVGLDDRMEELLDLLIEG--PPQLSAVTILDSIGLDKTAFAAEAYSS-NYMKHYFDCHAWVQEPYTC-YADQILDI  115 (157)
Q Consensus        40 ~~~~~vGr~~~~~~l~~~L~~~--~~~~~vi~I~G~gGiGKTtLa~~v~~~-~~~~~~F~~~~wv~~~~~~-~~~~~l~~  115 (157)
                      +...++|..++...|-.|+...  -+...-+.|+|+.|.|||+|......+ .++.++|   .-+...... +..-.++.
T Consensus        22 ~~~~l~g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~~q~~~E~~---l~v~Lng~~~~dk~al~~   98 (408)
T KOG2228|consen   22 PHINLFGVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSDIQENGENF---LLVRLNGELQTDKIALKG   98 (408)
T ss_pred             CCcceeehHHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhhHHhcCCeE---EEEEECccchhhHHHHHH
Confidence            3467899999999999988541  112345788999999999998777664 2233333   233333322 23345666


Q ss_pred             HHHHhCCCCCCcccccccHHHHHHHHHHHhcC------CcEEEEeeC
Q 045087          116 IIKFLMPSSRLSEIKDKNYEMKKIILHEYLMT------KRYLIVIDD  156 (157)
Q Consensus       116 i~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~------kr~LlVlDd  156 (157)
                      |.+++............+..+-+..|-..|..      -++++|+|+
T Consensus        99 I~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldE  145 (408)
T KOG2228|consen   99 ITRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDE  145 (408)
T ss_pred             HHHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeeh
Confidence            66666542211112233334444444444432      247888875

>cd01862 Rab7 Rab7 subfamily

Probab=96.51  E-value=0.0023  Score=44.44  Aligned_cols=22  Identities=27%  Similarity=0.379  Sum_probs=19.3

Q ss_pred             EEEEEeCCCCcHHHHHHHHhcC
Q 045087           67 AVTILDSIGLDKTAFAAEAYSS   88 (157)
Q Consensus        67 vi~I~G~gGiGKTtLa~~v~~~   88 (157)
                      -|+|+|.+|+|||||+..+.+.
T Consensus         2 ki~viG~~~~GKSsl~~~l~~~   23 (172)
T cd01862           2 KVIILGDSGVGKTSLMNQYVNK   23 (172)
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            3789999999999999988764

Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-

>cd04163 Era Era subfamily

Probab=96.51  E-value=0.0029  Score=43.19  Aligned_cols=24  Identities=13%  Similarity=0.134  Sum_probs=21.0

Q ss_pred             ceEEEEEeCCCCcHHHHHHHHhcC
Q 045087           65 LSAVTILDSIGLDKTAFAAEAYSS   88 (157)
Q Consensus        65 ~~vi~I~G~gGiGKTtLa~~v~~~   88 (157)
                      ...|+++|.+|+|||||...+...
T Consensus         3 ~~~i~~~G~~g~GKttl~~~l~~~   26 (168)
T cd04163           3 SGFVAIVGRPNVGKSTLLNALVGQ   26 (168)
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCC
Confidence            457999999999999999998764

Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.

>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]

Probab=96.51  E-value=0.0023  Score=45.67  Aligned_cols=29  Identities=10%  Similarity=-0.025  Sum_probs=23.5

Q ss_pred             CceEEEEEeCCCCcHHHHHHHHhcCcccccc
Q 045087           64 QLSAVTILDSIGLDKTAFAAEAYSSNYMKHY   94 (157)
Q Consensus        64 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~   94 (157)
                      +..++=++|.+|.||||+|.+++.  ++...
T Consensus        22 ~~~viW~TGLSGsGKSTiA~ale~--~L~~~   50 (197)
T COG0529          22 KGAVIWFTGLSGSGKSTIANALEE--KLFAK   50 (197)
T ss_pred             CCeEEEeecCCCCCHHHHHHHHHH--HHHHc
Confidence            456788889999999999999988  55443

>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional

Probab=96.50  E-value=0.011  Score=49.37  Aligned_cols=48  Identities=21%  Similarity=0.178  Sum_probs=38.9

Q ss_pred             CCCccccHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhcC
Q 045087           41 SRDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSS   88 (157)
Q Consensus        41 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~   88 (157)
                      ...++|....++++.+.+..-......|.|+|.+|+||+++|+.+++.
T Consensus       218 f~~iiG~S~~m~~~~~~i~~~A~s~~pVLI~GE~GTGKe~~A~~IH~~  265 (538)
T PRK15424        218 LGDLLGQSPQMEQVRQTILLYARSSAAVLIQGETGTGKELAAQAIHRE  265 (538)
T ss_pred             hhheeeCCHHHHHHHHHHHHHhCCCCcEEEECCCCCCHHHHHHHHHHh
Confidence            456999999999988887543223457889999999999999999874

>PRK13695 putative NTPase; Provisional

Probab=96.50  E-value=0.0025  Score=45.08  Aligned_cols=21  Identities=19%  Similarity=0.260  Sum_probs=19.0

Q ss_pred             EEEEEeCCCCcHHHHHHHHhc
Q 045087           67 AVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        67 vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      .+.|+|.+|+|||||++.+++
T Consensus         2 ~i~ltG~~G~GKTTll~~i~~   22 (174)
T PRK13695          2 KIGITGPPGVGKTTLVLKIAE   22 (174)
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            478999999999999999876

>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins

Probab=96.50  E-value=0.0088  Score=47.47  Aligned_cols=24  Identities=8%  Similarity=0.029  Sum_probs=21.2

Q ss_pred             CceEEEEEeCCCCcHHHHHHHHhc
Q 045087           64 QLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        64 ~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ....+.|.|.||.|||+|.+++.+
T Consensus        21 ~~~~~fv~G~~GtGKs~l~~~i~~   44 (364)
T PF05970_consen   21 EGLNFFVTGPAGTGKSFLIKAIID   44 (364)
T ss_pred             CCcEEEEEcCCCCChhHHHHHHHH
Confidence            346889999999999999999887

The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].

>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional

Probab=96.50  E-value=0.0021  Score=51.62  Aligned_cols=25  Identities=16%  Similarity=0.159  Sum_probs=22.2

Q ss_pred             CceEEEEEeCCCCcHHHHHHHHhcC
Q 045087           64 QLSAVTILDSIGLDKTAFAAEAYSS   88 (157)
Q Consensus        64 ~~~vi~I~G~gGiGKTtLa~~v~~~   88 (157)
                      -.+.|+|+|.+|.|||||++++.+.
T Consensus       218 ~~~~IvI~G~~gsGKTTL~~~La~~  242 (399)
T PRK08099        218 FVRTVAILGGESSGKSTLVNKLANI  242 (399)
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence            4678999999999999999998873

>TIGR02673 FtsE cell division ATP-binding protein FtsE

Probab=96.50  E-value=0.0049  Score=44.93  Aligned_cols=24  Identities=17%  Similarity=0.152  Sum_probs=21.4

Q ss_pred             ceEEEEEeCCCCcHHHHHHHHhcC
Q 045087           65 LSAVTILDSIGLDKTAFAAEAYSS   88 (157)
Q Consensus        65 ~~vi~I~G~gGiGKTtLa~~v~~~   88 (157)
                      ..+++|+|..|.|||||++.+..-
T Consensus        28 G~~~~l~G~nGsGKSTLl~~i~Gl   51 (214)
T TIGR02673        28 GEFLFLTGPSGAGKTTLLKLLYGA   51 (214)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            459999999999999999999763

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.

>TIGR01166 cbiO cobalt transport protein ATP-binding subunit

Probab=96.49  E-value=0.0052  Score=44.00  Aligned_cols=24  Identities=13%  Similarity=0.141  Sum_probs=21.3

Q ss_pred             ceEEEEEeCCCCcHHHHHHHHhcC
Q 045087           65 LSAVTILDSIGLDKTAFAAEAYSS   88 (157)
Q Consensus        65 ~~vi~I~G~gGiGKTtLa~~v~~~   88 (157)
                      ..+++|+|..|.|||||.+.+...
T Consensus        18 Ge~~~i~G~nGsGKSTLl~~i~G~   41 (190)
T TIGR01166        18 GEVLALLGANGAGKSTLLLHLNGL   41 (190)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            458999999999999999999763

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.

>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity

Probab=96.49  E-value=0.0052  Score=44.69  Aligned_cols=24  Identities=17%  Similarity=0.037  Sum_probs=21.5

Q ss_pred             ceEEEEEeCCCCcHHHHHHHHhcC
Q 045087           65 LSAVTILDSIGLDKTAFAAEAYSS   88 (157)
Q Consensus        65 ~~vi~I~G~gGiGKTtLa~~v~~~   88 (157)
                      ..+++|+|..|.|||||++.+...
T Consensus        26 G~~~~i~G~nGsGKSTLl~~l~G~   49 (210)
T cd03269          26 GEIFGLLGPNGAGKTTTIRMILGI   49 (210)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCC
Confidence            458999999999999999999873

In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways

Probab=96.49  E-value=0.0026  Score=43.88  Aligned_cols=23  Identities=17%  Similarity=0.283  Sum_probs=20.1

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhcC
Q 045087           66 SAVTILDSIGLDKTAFAAEAYSS   88 (157)
Q Consensus        66 ~vi~I~G~gGiGKTtLa~~v~~~   88 (157)
                      +.+.++|..|+|||||++.+...
T Consensus         2 krimliG~~g~GKTTL~q~L~~~   24 (143)
T PF10662_consen    2 KRIMLIGPSGSGKTTLAQALNGE   24 (143)
T ss_pred             ceEEEECCCCCCHHHHHHHHcCC
Confidence            35789999999999999999774

Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process

>cd04119 RJL RJL (RabJ-Like) subfamily

Probab=96.47  E-value=0.0025  Score=43.92  Aligned_cols=21  Identities=14%  Similarity=0.237  Sum_probs=18.9

Q ss_pred             EEEEeCCCCcHHHHHHHHhcC
Q 045087           68 VTILDSIGLDKTAFAAEAYSS   88 (157)
Q Consensus        68 i~I~G~gGiGKTtLa~~v~~~   88 (157)
                      |.++|.+|+|||||+.++...
T Consensus         3 i~~vG~~~vGKTsli~~l~~~   23 (168)
T cd04119           3 VISMGNSGVGKSCIIKRYCEG   23 (168)
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            679999999999999988764

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.

>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain

Probab=96.47  E-value=0.0022  Score=39.98  Aligned_cols=21  Identities=24%  Similarity=0.333  Sum_probs=18.5

Q ss_pred             EEEEEeCCCCcHHHHHHHHhc
Q 045087           67 AVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        67 vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ++.+.|.+|+||||++..+..
T Consensus         1 ~~~~~g~~G~Gktt~~~~l~~   21 (99)
T cd01983           1 VIVVTGKGGVGKTTLAANLAA   21 (99)
T ss_pred             CEEEECCCCCCHHHHHHHHHH
Confidence            367889999999999988877

Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.

>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]

Probab=96.47  E-value=0.0024  Score=45.29  Aligned_cols=28  Identities=11%  Similarity=0.223  Sum_probs=22.1

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhcCccccccc
Q 045087           66 SAVTILDSIGLDKTAFAAEAYSSNYMKHYF   95 (157)
Q Consensus        66 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F   95 (157)
                      +-|.++||.|+||||+.+.+..  .+.-+|
T Consensus         3 ~~IvLiG~mGaGKSTIGr~LAk--~L~~~F   30 (172)
T COG0703           3 MNIVLIGFMGAGKSTIGRALAK--ALNLPF   30 (172)
T ss_pred             ccEEEEcCCCCCHhHHHHHHHH--HcCCCc
Confidence            3578999999999999999977  444344

>smart00173 RAS Ras subfamily of RAS small GTPases

Probab=96.47  E-value=0.0025  Score=44.04  Aligned_cols=22  Identities=23%  Similarity=0.344  Sum_probs=19.0

Q ss_pred             EEEEEeCCCCcHHHHHHHHhcC
Q 045087           67 AVTILDSIGLDKTAFAAEAYSS   88 (157)
Q Consensus        67 vi~I~G~gGiGKTtLa~~v~~~   88 (157)
                      -|.|+|.+|+|||||+.++.+.
T Consensus         2 ki~v~G~~~~GKTsli~~~~~~   23 (164)
T smart00173        2 KLVVLGSGGVGKSALTIQFVQG   23 (164)
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            3788999999999999988764

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades

>PRK05748 replicative DNA helicase; Provisional

Probab=96.47  E-value=0.027  Score=45.91  Aligned_cols=55  Identities=15%  Similarity=0.010  Sum_probs=34.5

Q ss_pred             CCceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCCCCCHHHHHHHHHHHh
Q 045087           63 PQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPYTCYADQILDIIIKFL  120 (157)
Q Consensus        63 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~l~~i~~~l  120 (157)
                      ....++.|-|.+|+|||++|..+..+...+.. ..++|+++.  .+..++...++...
T Consensus       201 ~~G~livIaarpg~GKT~~al~ia~~~a~~~g-~~v~~fSlE--ms~~~l~~R~l~~~  255 (448)
T PRK05748        201 QPNDLIIVAARPSVGKTAFALNIAQNVATKTD-KNVAIFSLE--MGAESLVMRMLCAE  255 (448)
T ss_pred             CCCceEEEEeCCCCCchHHHHHHHHHHHHhCC-CeEEEEeCC--CCHHHHHHHHHHHh
Confidence            44568889999999999999888763222222 244555533  35556666665443

>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin

Probab=96.46  E-value=0.005  Score=45.13  Aligned_cols=24  Identities=17%  Similarity=0.019  Sum_probs=21.5

Q ss_pred             ceEEEEEeCCCCcHHHHHHHHhcC
Q 045087           65 LSAVTILDSIGLDKTAFAAEAYSS   88 (157)
Q Consensus        65 ~~vi~I~G~gGiGKTtLa~~v~~~   88 (157)
                      ..+++|+|..|.|||||.+.+...
T Consensus        26 Ge~~~i~G~nGsGKSTLl~~i~G~   49 (220)
T cd03265          26 GEIFGLLGPNGAGKTTTIKMLTTL   49 (220)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            468999999999999999999763

In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK02496 adk adenylate kinase; Provisional

Probab=96.46  E-value=0.0027  Score=45.22  Aligned_cols=21  Identities=19%  Similarity=0.105  Sum_probs=18.8

Q ss_pred             EEEEEeCCCCcHHHHHHHHhc
Q 045087           67 AVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        67 vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      .+.|.|++|+||||+|+.+..
T Consensus         3 ~i~i~G~pGsGKst~a~~la~   23 (184)
T PRK02496          3 RLIFLGPPGAGKGTQAVVLAE   23 (184)
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            478899999999999998876

>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes

Probab=96.45  E-value=0.0029  Score=44.46  Aligned_cols=22  Identities=14%  Similarity=0.196  Sum_probs=20.5

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhc
Q 045087           66 SAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        66 ~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      +++.|+|..|+|||||+..+..
T Consensus         2 ~vi~i~G~~gsGKTTli~~L~~   23 (159)
T cd03116           2 KVIGFVGYSGSGKTTLLEKLIP   23 (159)
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5899999999999999999987

In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.

>cd04155 Arl3 Arl3 subfamily

Probab=96.45  E-value=0.0026  Score=44.37  Aligned_cols=24  Identities=21%  Similarity=0.095  Sum_probs=21.5

Q ss_pred             ceEEEEEeCCCCcHHHHHHHHhcC
Q 045087           65 LSAVTILDSIGLDKTAFAAEAYSS   88 (157)
Q Consensus        65 ~~vi~I~G~gGiGKTtLa~~v~~~   88 (157)
                      ...++|+|.+|+|||||...+...
T Consensus        14 ~~~v~i~G~~g~GKStLl~~l~~~   37 (173)
T cd04155          14 EPRILILGLDNAGKTTILKQLASE   37 (173)
T ss_pred             ccEEEEEccCCCCHHHHHHHHhcC
Confidence            456999999999999999999874

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.

>TIGR00231 small_GTP small GTP-binding protein domain

Probab=96.45  E-value=0.0028  Score=42.68  Aligned_cols=23  Identities=9%  Similarity=0.232  Sum_probs=20.4

Q ss_pred             EEEEEeCCCCcHHHHHHHHhcCc
Q 045087           67 AVTILDSIGLDKTAFAAEAYSSN   89 (157)
Q Consensus        67 vi~I~G~gGiGKTtLa~~v~~~~   89 (157)
                      -|+++|.+|+|||||...+....
T Consensus         3 ki~~~G~~~~GKstl~~~l~~~~   25 (161)
T TIGR00231         3 KIVIVGDPNVGKSTLLNRLLGNK   25 (161)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            57899999999999999987754

This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	157
1z6t_A	591	APAF-1, apoptotic protease activating factor 1; ca	9e-15
2a5y_B	549	CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis	1e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-07

>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens} Length = 591

 Score = 69.5 bits (170), Expect = 9e-15
 Identities = 29/162 (17%), Positives = 49/162 (30%), Gaps = 6/162 (3%)

Query: 2   QSRITDIKQRMQQLEHTDSEIIDAIKTFEAEAGISSSSKSRDTVGLDDRMEELLDLLIEG 61
            + + D    +      DS                   +    V     +  +   L + 
Sbjct: 84  AALLHDGIPVVSSSSGKDSVSGITSYVRTVLCEGGVPQRPVVFVTRKKLVNAIQQKLSKL 143

Query: 62  PPQLSAVTILDSIGLDKTAFAAEAYSSNY-MKHYFDCH-AW--VQEPYTCYADQILDIII 117
             +   VTI    G  K+  AAEA   +  ++  F     W  V +         L  + 
Sbjct: 144 KGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQDKSGLLMKLQNLC 203

Query: 118 KFLMPSSRLSEIKDKNYEMKKIILHEYLM--TKRYLIVIDDV 157
             L      S+    N E  K  L   ++    R L+++DDV
Sbjct: 204 TRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDV 245

>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A* Length = 549

 Score = 54.6 bits (131), Expect = 1e-09
 Identities = 24/168 (14%), Positives = 55/168 (32%), Gaps = 15/168 (8%)

Query: 2   QSRITDIKQRMQQLEHTDSEIIDAIKTFEAEAGISSSSKSRDTVGLDDRMEELLDLLIEG 61
           +  I         L         + +  + +  + +  K       +  ++ ++  L E 
Sbjct: 88  EDYIDFAINEPDLLRPVVIAPQFSRQMLDRKLLLGNVPKQMTCYIREYHVDRVIKKLDEM 147

Query: 62  PPQLSAVTILDSI----GLDKTAFAAEAYSSN--YMKHYFDCHAWVQEPYTCYAD----- 110
               S       +    G  K+  A++A S +   +   +D   W+++  T         
Sbjct: 148 CDLDSFFL---FLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLF 204

Query: 111 -QILDIIIKFLMPSSRLSEIKDKNYEMKKIILHEYLMTKRYLIVIDDV 157
             IL ++       +  S     +  +K++I +  +     L V DDV
Sbjct: 205 TDILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDV 252

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 48.7 bits (115), Expect = 1e-07
 Identities = 29/123 (23%), Positives = 47/123 (38%), Gaps = 17/123 (13%)

Query: 50  RMEELLDL---LIEGPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHA-WVQEPY 105
           R++  L L   L+E  P    V I   +G  KT  A +   S  ++   D    W+    
Sbjct: 133 RLQPYLKLRQALLELRPA-KNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKN 191

Query: 106 TCYADQILDIIIKFLM--------PSSRLSEIKDKNYEMKKIILHEYLMTKRY---LIVI 154
               + +L+++ K L          S   S IK       +  L   L +K Y   L+V+
Sbjct: 192 CNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKL-RIHSIQAELRRLLKSKPYENCLLVL 250

Query: 155 DDV 157
            +V
Sbjct: 251 LNV 253

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	157
2a5y_B	549	CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis	99.9
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	99.8
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	99.76
1z6t_A	591	APAF-1, apoptotic protease activating factor 1; ca	99.76
1w5s_A	412	Origin recognition complex subunit 2 ORC2; replica	99.5
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	99.45
2qby_B	384	CDC6 homolog 3, cell division control protein 6 ho	99.43
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	99.4
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	99.4
2qen_A	350	Walker-type ATPase; unknown function; HET: ADP; 2.	99.34
2fna_A	357	Conserved hypothetical protein; structural genomic	99.22
3te6_A	318	Regulatory protein SIR3; heterochromatin, gene sil	99.14
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	98.98
2chg_A	226	Replication factor C small subunit; DNA-binding pr	98.96
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	98.88
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	98.8
1sxj_B	323	Activator 1 37 kDa subunit; clamp loader, processi	98.73
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	98.66
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	98.57
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	98.56
1iqp_A	327	RFCS; clamp loader, extended AAA-ATPase domain, co	98.54
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	98.49
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	98.48
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	98.46
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	98.45
1sxj_A	516	Activator 1 95 kDa subunit; clamp loader, processi	98.43
2cvh_A	220	DNA repair and recombination protein RADB; filamen	98.41
3u61_B	324	DNA polymerase accessory protein 44; AAA+, ATP hyd	98.4
2z4s_A	440	Chromosomal replication initiator protein DNAA; AA	98.4
3d8b_A	357	Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s	98.4
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	98.39
3uk6_A	368	RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding	98.39
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	98.37
3pfi_A	338	Holliday junction ATP-dependent DNA helicase RUVB;	98.36
1jr3_A	373	DNA polymerase III subunit gamma; processivity, pr	98.36
1hqc_A	324	RUVB; extended AAA-ATPase domain, complex with nuc	98.35
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	98.34
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	98.33
3pvs_A	447	Replication-associated recombination protein A; ma	98.31
2qp9_X	355	Vacuolar protein sorting-associated protein 4; ATP	98.3
4b4t_L	437	26S protease subunit RPT4; hydrolase, AAA-atpases,	98.29
1qvr_A	854	CLPB protein; coiled coil, AAA ATPase, chaperone;	98.29
3vfd_A	389	Spastin; ATPase, microtubule severing, hydrolase;	98.29
2chq_A	319	Replication factor C small subunit; DNA-binding pr	98.25
2zan_A	444	Vacuolar protein sorting-associating protein 4B; S	98.25
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	98.23
2c9o_A	456	RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-	98.22
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	98.21
4b4t_J	405	26S protease regulatory subunit 8 homolog; hydrola	98.21
3hu3_A	489	Transitional endoplasmic reticulum ATPase; VCP, tr	98.2
4b4t_H	467	26S protease regulatory subunit 7 homolog; hydrola	98.2
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	98.19
3hr8_A	356	Protein RECA; alpha and beta proteins (A/B, A+B),	98.19
1r6b_X	758	CLPA protein; AAA+, N-terminal domain, CLPS, cryst	98.17
4b4t_M	434	26S protease regulatory subunit 6A; hydrolase, AAA	98.16
2ce7_A	476	Cell division protein FTSH; metalloprotease; HET:	98.14
2z43_A	324	DNA repair and recombination protein RADA; archaea	98.13
1v5w_A	343	DMC1, meiotic recombination protein DMC1/LIM15 hom	98.12
2vhj_A	331	Ntpase P4, P4; non- hydrolysable ATP analogue, hyd	98.12
2zr9_A	349	Protein RECA, recombinase A; recombination, RECA m	98.08
3bos_A	242	Putative DNA replication factor; P-loop containing	98.08
1xp8_A	366	RECA protein, recombinase A; recombination, radior	98.07
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	98.07
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	98.06
3io5_A	333	Recombination and repair protein; storage dimer, i	98.04
4b4t_I	437	26S protease regulatory subunit 4 homolog; hydrola	98.04
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	98.04
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	98.03
2i1q_A	322	DNA repair and recombination protein RADA; ATPase,	98.03
3co5_A	143	Putative two-component system transcriptional RES	98.03
3cf2_A	806	TER ATPase, transitional endoplasmic reticulum ATP	98.01
2qgz_A	308	Helicase loader, putative primosome component; str	97.99
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	97.98
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	97.98
3pxg_A	468	Negative regulator of genetic competence CLPC/MEC;	97.96
2bjv_A	265	PSP operon transcriptional activator; AAA, transcr	97.94
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	97.93
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	97.93
2dhr_A	499	FTSH; AAA+ protein, hexameric Zn metalloprotease,	97.9
1u94_A	356	RECA protein, recombinase A; homologous recombinat	97.9
2r44_A	331	Uncharacterized protein; putative ATPase, structur	97.88
1ofh_A	310	ATP-dependent HSL protease ATP-binding subunit HSL	97.85
3bh0_A	315	DNAB-like replicative helicase; ATPase, replicatio	97.81
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	97.79
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	97.78
1ojl_A	304	Transcriptional regulatory protein ZRAR; response	97.76
4a74_A	231	DNA repair and recombination protein RADA; hydrola	97.76
3pxi_A	758	Negative regulator of genetic competence CLPC/MEC;	97.75
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	97.75
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	97.75
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	97.73
3hws_A	363	ATP-dependent CLP protease ATP-binding subunit CL;	97.71
2gno_A	305	DNA polymerase III, gamma subunit-related protein;	97.69
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	97.67
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	97.67
3lda_A	400	DNA repair protein RAD51; DNA binding protein, ATP	97.67
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	97.65
3nbx_X	500	ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structu	97.6
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	97.57
3m6a_A	543	ATP-dependent protease LA 1; alpha, beta, ATP-bind	97.54
1um8_A	376	ATP-dependent CLP protease ATP-binding subunit CL;	97.52
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	97.52
2b8t_A	223	Thymidine kinase; deoxyribonucleoside kinase, zinc	97.51
3cmu_A	2050	Protein RECA, recombinase A; homologous recombinat	97.51
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	97.5
1q57_A	503	DNA primase/helicase; dntpase, DNA replication, tr	97.49
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	97.49
1a5t_A	334	Delta prime, HOLB; zinc finger, DNA replication; 2	97.49
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	97.49
4a1f_A	338	DNAB helicase, replicative DNA helicase; hydrolase	97.49
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	97.48
1fx0_B	498	ATP synthase beta chain; latent ATPase, thermal st	97.46
1sky_E	473	F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alp	97.44
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	97.43
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	97.43
2q6t_A	444	DNAB replication FORK helicase; hydrolase; 2.90A {	97.43
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	97.42
2ck3_D	482	ATP synthase subunit beta\, mitochondrial; hydrola	97.42
2xxa_A	433	Signal recognition particle protein; protein trans	97.42
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	97.42
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	97.41
1g8p_A	350	Magnesium-chelatase 38 kDa subunit; parallel beta	97.4
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	97.37
3cf2_A	806	TER ATPase, transitional endoplasmic reticulum ATP	97.37
3bgw_A	444	DNAB-like replicative helicase; ATPase, replicatio	97.36
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	97.35
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	97.35
2r6a_A	454	DNAB helicase, replicative helicase; replication,	97.34
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	97.32
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	97.32
1g41_A	444	Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dep	97.32
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	97.31
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	97.3
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	97.29
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	97.28
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	97.27
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	97.27
3pxi_A	758	Negative regulator of genetic competence CLPC/MEC;	97.24
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	97.24
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	97.24
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	97.23
3cmu_A	2050	Protein RECA, recombinase A; homologous recombinat	97.23
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	97.22
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	97.21
3cmw_A	1706	Protein RECA, recombinase A; homologous recombinat	97.2
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	97.19
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	97.19
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	97.19
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	97.18
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	97.18
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	97.18
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	97.18
3ice_A	422	Transcription termination factor RHO; transcriptio	97.18
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	97.17
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	97.17
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	97.16
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	97.15
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	97.15
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	97.15
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	97.14
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	97.14
2ffh_A	425	Protein (FFH); SRP54, signal recognition particle,	97.13
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	97.13
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	97.13
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	97.13
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	97.12
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	97.12
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	97.12
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	97.12
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	97.12
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	97.11
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	97.11
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	97.11
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	97.1
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	97.1
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	97.1
3k1j_A	604	LON protease, ATP-dependent protease LON; ATP-bind	97.1
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	97.09
2hf9_A	226	Probable hydrogenase nickel incorporation protein	97.09
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	97.09
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	97.09
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	97.09
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	97.08
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	97.08
3vr4_D	465	V-type sodium ATPase subunit D; V-ATPase, rotary m	97.07
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	97.07
2vli_A	183	Antibiotic resistance protein; transferase, tunica	97.07
1zu4_A	320	FTSY; GTPase, signal recognition particle, SRP, re	97.06
1via_A	175	Shikimate kinase; structural genomics, transferase	97.06
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	97.05
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	97.05
3hjn_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	97.05
1ls1_A	295	Signal recognition particle protein; FFH, SRP54, S	97.05
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	97.05
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	97.04
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	97.04
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	97.03
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	97.03
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	97.02
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	97.01
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	97.01
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	97.0
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	96.99
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	96.98
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	96.98
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	96.97
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	96.97
1tue_A	212	Replication protein E1; helicase, replication, E1E	96.96
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	96.96
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	96.94
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	96.93
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	96.92
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	96.92
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	96.92
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	96.91
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	96.91
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	96.9
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	96.9
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	96.89
1r6b_X	758	CLPA protein; AAA+, N-terminal domain, CLPS, cryst	96.89
4edh_A	213	DTMP kinase, thymidylate kinase; structural genomi	96.89
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	96.89
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	96.89
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	96.89
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	96.89
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	96.87
2r9v_A	515	ATP synthase subunit alpha; TM1612, structural gen	96.85
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	96.85
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	96.84
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	96.84
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	96.81
3fwy_A	314	Light-independent protochlorophyllide reductase I	96.8
1fx0_A	507	ATP synthase alpha chain; latent ATPase, thermal s	96.78
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	96.78
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	96.77
1qvr_A	854	CLPB protein; coiled coil, AAA ATPase, chaperone;	96.76
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	96.76
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	96.75
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	96.75
3cmw_A	1706	Protein RECA, recombinase A; homologous recombinat	96.74
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	96.74
1u0j_A	267	DNA replication protein; AAA+ protein, P-loop atpa	96.73
2c61_A	469	A-type ATP synthase non-catalytic subunit B; hydro	96.73
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	96.71
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	96.7
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	96.69
3gqb_B	464	V-type ATP synthase beta chain; A3B3, V-ATPase, AT	96.69
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	96.69
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	96.69
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	96.69
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	96.68
4tmk_A	213	Protein (thymidylate kinase); ATP:DTMP phosphotran	96.68
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	96.67
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	96.67
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	96.67
3l0o_A	427	Transcription termination factor RHO; helicase, RH	96.66
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	96.66
1b0u_A	262	Histidine permease; ABC transporter, transport pro	96.66
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	96.66
3oaa_A	513	ATP synthase subunit alpha; rossmann fold, hydrola	96.65
3mfy_A	588	V-type ATP synthase alpha chain; A-type ATP syntha	96.64
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	96.62
3lv8_A	236	DTMP kinase, thymidylate kinase; structural genomi	96.62
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	96.6
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	96.59
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	96.59
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	96.59
2qe7_A	502	ATP synthase subunit alpha; blockage of ATP hydrol	96.59
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	96.55
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	96.55
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	96.55
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	96.54
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	96.54
1ji0_A	240	ABC transporter; ATP binding protein, structural g	96.54
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	96.53
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	96.53
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	96.52
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	96.51
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	96.5
3f9v_A	595	Minichromosome maintenance protein MCM; replicativ	96.5
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	96.49
4hlc_A	205	DTMP kinase, thymidylate kinase; TMK, MRSA, pipiri	96.49
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	96.48
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	96.46
2wji_A	165	Ferrous iron transport protein B homolog; membrane	96.46
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	96.46
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	96.45
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	96.45
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	96.44
1g6h_A	257	High-affinity branched-chain amino acid transport	96.43
1sgw_A	214	Putative ABC transporter; structural genomics, P p	96.43
2ck3_A	510	ATP synthase subunit alpha\, mitochondrial; hydrol	96.42
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	96.42
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	96.41
1g5t_A	196	COB(I)alamin adenosyltransferase; P-loop protein,	96.41
3end_A	307	Light-independent protochlorophyllide reductase ir	96.4
2ghi_A	260	Transport protein; multidrug resistance protein, M	96.4
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	96.4
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	96.4
2og2_A	359	Putative signal recognition particle receptor; nuc	96.4
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	96.39
2ocp_A	241	DGK, deoxyguanosine kinase; protein-nucleotide com	96.39
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	96.39
2eyu_A	261	Twitching motility protein PILT; pilus retraction	96.38
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	96.36
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	96.36
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	96.36
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	96.36
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	96.36
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	96.36
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	96.34
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	96.34
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	96.34
2zts_A	251	Putative uncharacterized protein PH0186; KAIC like	96.32
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	96.32
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	96.31
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	96.31
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	96.3
3ld9_A	223	DTMP kinase, thymidylate kinase; ssgcid, NIH, niai	96.3
1p5z_B	263	DCK, deoxycytidine kinase; nucleoside kinase, P-lo	96.29
2ged_A	193	SR-beta, signal recognition particle receptor beta	96.28
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	96.28
1g8f_A	511	Sulfate adenylyltransferase; alpha-beta protein, b	96.26
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	96.25
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	96.25
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	96.25
3v9p_A	227	DTMP kinase, thymidylate kinase; ssgcid, STRU geno	96.24
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	96.22
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	96.21
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	96.2
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	96.2
3upu_A	459	ATP-dependent DNA helicase DDA; RECA-like domain,	96.17
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	96.17
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	96.17
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	96.17
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	96.17
4akg_A	2695	Glutathione S-transferase class-MU 26 kDa isozyme	96.15
3foz_A	316	TRNA delta(2)-isopentenylpyrophosphate transferas;	96.15
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	96.15
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	96.15
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	96.14
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	96.13
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	96.12
2axn_A	520	6-phosphofructo-2-kinase/fructose-2,6- biphosphata	96.12
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	96.11
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	96.1
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	96.1
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	96.1
3kta_A	182	Chromosome segregation protein SMC; structural mai	96.1
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	96.1
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	96.09
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	96.09
1nrj_B	218	SR-beta, signal recognition particle receptor beta	96.09
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	96.08
4dzz_A	206	Plasmid partitioning protein PARF; deviant walker	96.07
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	96.05
3llm_A	235	ATP-dependent RNA helicase A; alpha-beta-alpha, st	96.05
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	96.04
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	96.04
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	96.03
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	96.02
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	96.01
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	96.01
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	96.0
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	95.98
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	95.98
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	95.98
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	95.97
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	95.97
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	95.96
4b3f_X	646	DNA-binding protein smubp-2; hydrolase, helicase;	95.96
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	95.96
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	95.96
2h92_A	219	Cytidylate kinase; rossmann fold, transferase; HET	95.96
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	95.95
3eph_A	409	TRNA isopentenyltransferase; transferase, alternat	95.95
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	95.95
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	95.95
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	95.94
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	95.93
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	95.92
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	95.92
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	95.92
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	95.91
2r8r_A	228	Sensor protein; KDPD, PFAM02702, MCSG, structural	95.91
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	95.9
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	95.9
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	95.9
1bif_A	469	6-phosphofructo-2-kinase/ fructose-2,6-bisphospha;	95.9
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	95.89
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	95.89
3fdi_A	201	Uncharacterized protein; cytidylate kinase like pr	95.89
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	95.86
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	95.86
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	95.86
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	95.86
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	95.85
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	95.85
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	95.85
1m8p_A	573	Sulfate adenylyltransferase; rossmann fold, phosph	95.84
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	95.83
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	95.83
1cp2_A	269	CP2, nitrogenase iron protein; oxidoreductase; 1.9	95.82
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	95.82
3llu_A	196	RAS-related GTP-binding protein C; structural geno	95.81
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	95.81
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	95.81
2orw_A	184	Thymidine kinase; TMTK, TP4A, transferase; HET: 4T	95.79
2ewv_A	372	Twitching motility protein PILT; pilus retraction	95.79
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	95.79
2afh_E	289	Nitrogenase iron protein 1; nitrogen fixation, iro	95.79
3gmt_A	230	Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle	95.78
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	95.78
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	95.78
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	95.77
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	95.77
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	95.77
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	95.77
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	95.76
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	95.75
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	95.75
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	95.75
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	95.75
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	95.74
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	95.73
3io3_A	348	DEHA2D07832P; chaperone, membrane traffic, ATPase;	95.73
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	95.72
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	95.72
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	95.7
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	95.7
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	95.7
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	95.7
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	95.7
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	95.69
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	95.69
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	95.68
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	95.68
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	95.68
3tmk_A	216	Thymidylate kinase; phosphotransferase; HET: T5A;	95.68
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	95.67
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	95.67
1x6v_B	630	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	95.67
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	95.66
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	95.66
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	95.65
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	95.65
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	95.64
2fh5_B	214	SR-beta, signal recognition particle receptor beta	95.64
3iqw_A	334	Tail-anchored protein targeting factor GET3; ATPas	95.63
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	95.63
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	95.63
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	95.63
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	95.63
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	95.62
2j69_A	695	Bacterial dynamin-like protein; FZO, FZL, GTPase,	95.6
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	95.6
2gk6_A	624	Regulator of nonsense transcripts 1; UPF1, helicas	95.59
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	95.59
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	95.59
1p9r_A	418	General secretion pathway protein E; bacterial typ	95.59
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	95.58
2gks_A	546	Bifunctional SAT/APS kinase; transferase, sulfuryl	95.58
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	95.57
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	95.57
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	95.57
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	95.57
3vr4_A	600	V-type sodium ATPase catalytic subunit A; V-ATPase	95.56
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	95.56
3ug7_A	349	Arsenical pump-driving ATPase; tail-anchored, memb	95.55
3kjh_A	254	CO dehydrogenase/acetyl-COA synthase complex, acce	95.54
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	95.54
1jwy_B	315	Dynamin A GTPase domain; dynamin, GTPase, GDP, myo	95.51
3fkq_A	373	NTRC-like two-domain protein; RER070207001320, str	95.5
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	95.5
3tqf_A	181	HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co	95.48
1c9k_A	180	COBU, adenosylcobinamide kinase; alpha/beta struct	95.48
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	95.47
2fz4_A	237	DNA repair protein RAD25; RECA-like domain, DNA da	95.45
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	95.45
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	95.45
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	95.45
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	95.44
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	95.43
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	95.42
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	95.41
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	95.41
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	95.41
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	95.39
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	95.37
3ch4_B	202	Pmkase, phosphomevalonate kinase; parallel beta-sh	95.36
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	95.36
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	95.32
4i1u_A	210	Dephospho-COA kinase; structural genomics, niaid,	95.32
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	95.32
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	95.31
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	95.29
3zq6_A	324	Putative arsenical pump-driving ATPase; tail-ancho	95.28
3ez2_A	398	Plasmid partition protein A; type IA, DNA binding,	95.26
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	95.25
4dkx_A	216	RAS-related protein RAB-6A; GTP binding fold, memb	95.25

>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*

Probab=99.90  E-value=9.6e-23  Score=166.67  Aligned_cols=113  Identities=17%  Similarity=0.233  Sum_probs=96.8

Q ss_pred             cccHHHHHHHHHHHhcC-CCCceEEEEEeCCCCcHHHHHHHHhc--CcccccccCeeEEEEcCCCC--CHHHHHHHHHHH
Q 045087           45 VGLDDRMEELLDLLIEG-PPQLSAVTILDSIGLDKTAFAAEAYS--SNYMKHYFDCHAWVQEPYTC--YADQILDIIIKF  119 (157)
Q Consensus        45 vGr~~~~~~l~~~L~~~-~~~~~vi~I~G~gGiGKTtLa~~v~~--~~~~~~~F~~~~wv~~~~~~--~~~~~l~~i~~~  119 (157)
                      +||+.++++|.++|..+ ....++|+|+||||+||||||+++|+  +.+++.+|++++|+++++.+  +...++..|+.+
T Consensus       131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~il~~  210 (549)
T 2a5y_B          131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDILLM  210 (549)
T ss_dssp             CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHHHHH
T ss_pred             CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHHHHH
Confidence            59999999999999765 34679999999999999999999997  66899999999999998875  789999999999


Q ss_pred             hCCCCC---CcccccccHHHHHHHHHHHhcCC-cEEEEeeCC
Q 045087          120 LMPSSR---LSEIKDKNYEMKKIILHEYLMTK-RYLIVIDDV  157 (157)
Q Consensus       120 l~~~~~---~~~~~~~~~~~~~~~l~~~L~~k-r~LlVlDdV  157 (157)
                      ++....   .+.....+..++...+++.|.++ |||||||||
T Consensus       211 l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv  252 (549)
T 2a5y_B          211 LKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDV  252 (549)
T ss_dssp             HTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEE
T ss_pred             HhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECC
Confidence            987532   12233456678899999999996 999999996

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=99.80  E-value=3.6e-19  Score=155.32  Aligned_cols=119  Identities=23%  Similarity=0.170  Sum_probs=94.2

Q ss_pred             CCCCCccccHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhcCccc-cccc-CeeEEEEcCCCCC--HHHHHH
Q 045087           39 SKSRDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSSNYM-KHYF-DCHAWVQEPYTCY--ADQILD  114 (157)
Q Consensus        39 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-~~~F-~~~~wv~~~~~~~--~~~~l~  114 (157)
                      ..+..|+||+.++++|.++|.......++++|+||||+||||||+++|++.+. ..+| +..+|+++++...  ....+.
T Consensus       121 ~~~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  200 (1249)
T 3sfz_A          121 QRPVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMKLQ  200 (1249)
T ss_dssp             CCCSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHHHHH
T ss_pred             CCCceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHHHHH
Confidence            34567999999999999999876667899999999999999999999996443 4556 4566999988543  345577


Q ss_pred             HHHHHhCCCCCCcccccccHHHHHHHHHHHhcCC--cEEEEeeCC
Q 045087          115 IIIKFLMPSSRLSEIKDKNYEMKKIILHEYLMTK--RYLIVIDDV  157 (157)
Q Consensus       115 ~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~k--r~LlVlDdV  157 (157)
                      .++..+............+.+++...++.+|.++  |||||||||
T Consensus       201 ~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~  245 (1249)
T 3sfz_A          201 NLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDV  245 (1249)
T ss_dssp             HHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESC
T ss_pred             HHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecC
Confidence            7888877644322234567789999999999887  999999997

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*

Probab=99.76  E-value=2e-18  Score=148.24  Aligned_cols=113  Identities=19%  Similarity=0.167  Sum_probs=88.6

Q ss_pred             ccccHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhcCcccccccCe-eEEEEcCCCCCHHHHHHHHHHHhCC
Q 045087           44 TVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDC-HAWVQEPYTCYADQILDIIIKFLMP  122 (157)
Q Consensus        44 ~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~-~~wv~~~~~~~~~~~l~~i~~~l~~  122 (157)
                      .+||+.++++|.++|...+ ..++++|+||||+||||||+++|++.+++.+|++ ++|+++++.++...++..|+..+..
T Consensus       130 ~VGRe~eLeeL~elL~~~d-~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~lL~~  208 (1221)
T 1vt4_I          130 NVSRLQPYLKLRQALLELR-PAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQ  208 (1221)
T ss_dssp             CCCCHHHHHHHHHHHHHCC-SSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHhccC-CCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHHhh
Confidence            4999999999999998633 3789999999999999999999987778899986 8899999999988888888775432


Q ss_pred             CC-----CCc--ccccccHHHHHHHHHHHh---cCCcEEEEeeCC
Q 045087          123 SS-----RLS--EIKDKNYEMKKIILHEYL---MTKRYLIVIDDV  157 (157)
Q Consensus       123 ~~-----~~~--~~~~~~~~~~~~~l~~~L---~~kr~LlVlDdV  157 (157)
                      ..     ...  .....+.+++...+++.|   .++|+|||||||
T Consensus       209 i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDV  253 (1221)
T 1vt4_I          209 IDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNV  253 (1221)
T ss_dssp             HCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESC
T ss_pred             cCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCc
Confidence            10     000  001123456677777766   789999999997

>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}

Probab=99.76  E-value=2.9e-18  Score=140.74  Aligned_cols=118  Identities=22%  Similarity=0.192  Sum_probs=88.9

Q ss_pred             CCCCCccccHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhcCccc-cccc-CeeEEEEcCCCCCHHHHHHHH
Q 045087           39 SKSRDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSSNYM-KHYF-DCHAWVQEPYTCYADQILDII  116 (157)
Q Consensus        39 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-~~~F-~~~~wv~~~~~~~~~~~l~~i  116 (157)
                      ..+..||||+.++++|.++|.......++++|+||||+||||||..++++..+ ..+| +.++|++++.. +...++..+
T Consensus       121 ~~~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~-~~~~~~~~l  199 (591)
T 1z6t_A          121 QRPVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ-DKSGLLMKL  199 (591)
T ss_dssp             CCCSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC-CHHHHHHHH
T ss_pred             CCCCeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC-chHHHHHHH
Confidence            34577999999999999999865556789999999999999999999997555 7789 47899998765 334444444


Q ss_pred             ---HHHhCCCCCCcccccccHHHHHHHHHHHhcC--CcEEEEeeCC
Q 045087          117 ---IKFLMPSSRLSEIKDKNYEMKKIILHEYLMT--KRYLIVIDDV  157 (157)
Q Consensus       117 ---~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~--kr~LlVlDdV  157 (157)
                         +..+............+.+.+...+...|.+  +++|||||||
T Consensus       200 ~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv  245 (591)
T 1z6t_A          200 QNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDV  245 (591)
T ss_dssp             HHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEE
T ss_pred             HHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCC
Confidence               4455432111112345677888889988876  7899999996

>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*

Probab=99.50  E-value=2e-13  Score=106.98  Aligned_cols=114  Identities=13%  Similarity=0.094  Sum_probs=84.4

Q ss_pred             CCCCCccccHHHHHHHHHHH-hc--CC--CCceEEEE--EeCCCCcHHHHHHHHhcCcccccc-----cC-eeEEEEcCC
Q 045087           39 SKSRDTVGLDDRMEELLDLL-IE--GP--PQLSAVTI--LDSIGLDKTAFAAEAYSSNYMKHY-----FD-CHAWVQEPY  105 (157)
Q Consensus        39 ~~~~~~vGr~~~~~~l~~~L-~~--~~--~~~~vi~I--~G~gGiGKTtLa~~v~~~~~~~~~-----F~-~~~wv~~~~  105 (157)
                      ..+..++||+.++++|.+++ ..  ..  .....+.|  +|++|+||||||+.+++  .....     |. ..+|+++..
T Consensus        19 ~~p~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~--~~~~~~~~~~~~~~~~~~~~~~   96 (412)
T 1w5s_A           19 YIPPELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVK--RVSEAAAKEGLTVKQAYVNAFN   96 (412)
T ss_dssp             CCCSSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHH--HHHHHHHHTTCCEEEEEEEGGG
T ss_pred             cCCCCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHH--HHHHHHhccCCceeEEEEECCC
Confidence            34578999999999999988 42  11  23456677  99999999999999998  44332     22 357888767


Q ss_pred             CCCHHHHHHHHHHHhCCCCCCcccccccHHHHHHHHHHHhc--CCcEEEEeeCC
Q 045087          106 TCYADQILDIIIKFLMPSSRLSEIKDKNYEMKKIILHEYLM--TKRYLIVIDDV  157 (157)
Q Consensus       106 ~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~--~kr~LlVlDdV  157 (157)
                      ..+...++..++.+++...+   ....+..++...+.+.|.  +++++|||||+
T Consensus        97 ~~~~~~~~~~l~~~l~~~~~---~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~  147 (412)
T 1w5s_A           97 APNLYTILSLIVRQTGYPIQ---VRGAPALDILKALVDNLYVENHYLLVILDEF  147 (412)
T ss_dssp             CCSHHHHHHHHHHHHTCCCC---CTTCCHHHHHHHHHHHHHHHTCEEEEEEEST
T ss_pred             CCCHHHHHHHHHHHhCCCCC---CCCCCHHHHHHHHHHHHHhcCCeEEEEEeCH
Confidence            77889999999999976432   123345667777777775  77999999996

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=99.45  E-value=9.3e-13  Score=102.04  Aligned_cols=114  Identities=14%  Similarity=0.085  Sum_probs=86.8

Q ss_pred             CCCCCccccHHHHHHHHHHHhcC--CCCceEEEEEeCCCCcHHHHHHHHhcCcccccc------cCeeEEEEcCCCCCHH
Q 045087           39 SKSRDTVGLDDRMEELLDLLIEG--PPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHY------FDCHAWVQEPYTCYAD  110 (157)
Q Consensus        39 ~~~~~~vGr~~~~~~l~~~L~~~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~------F~~~~wv~~~~~~~~~  110 (157)
                      ..++.++||+.++++|..++...  ......+.|+|++|+||||||+.+++  .....      -...+|+++....+..
T Consensus        16 ~~p~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~--~~~~~~~~~~~~~~~~~i~~~~~~~~~   93 (387)
T 2v1u_A           16 YVPDVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLR--RLEARASSLGVLVKPIYVNARHRETPY   93 (387)
T ss_dssp             CCCSCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHH--HHHHHHHHHTCCEEEEEEETTTSCSHH
T ss_pred             cCCCCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHH--HHHHHHhccCCCeEEEEEECCcCCCHH
Confidence            34578999999999999988542  33456889999999999999999988  44322      1245678888888899


Q ss_pred             HHHHHHHHHhCCCCCCcccccccHHHHHHHHHHHh--cCCcEEEEeeCC
Q 045087          111 QILDIIIKFLMPSSRLSEIKDKNYEMKKIILHEYL--MTKRYLIVIDDV  157 (157)
Q Consensus       111 ~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~L--~~kr~LlVlDdV  157 (157)
                      .++..++.+++...+   ....+..++...+.+.+  .+++++|+|||+
T Consensus        94 ~~~~~l~~~l~~~~~---~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi  139 (387)
T 2v1u_A           94 RVASAIAEAVGVRVP---FTGLSVGEVYERLVKRLSRLRGIYIIVLDEI  139 (387)
T ss_dssp             HHHHHHHHHHSCCCC---SSCCCHHHHHHHHHHHHTTSCSEEEEEEETT
T ss_pred             HHHHHHHHHhCCCCC---CCCCCHHHHHHHHHHHHhccCCeEEEEEccH
Confidence            999999999976433   23444567777777777  456899999986

>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=99.43  E-value=1.1e-12  Score=101.94  Aligned_cols=113  Identities=13%  Similarity=-0.005  Sum_probs=84.5

Q ss_pred             CCCccccHHHHHHHHHHHhc--CCCCceEEEEEeCCCCcHHHHHHHHhcCcccccc--------cCeeEEEEcCCCC-CH
Q 045087           41 SRDTVGLDDRMEELLDLLIE--GPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHY--------FDCHAWVQEPYTC-YA  109 (157)
Q Consensus        41 ~~~~vGr~~~~~~l~~~L~~--~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~--------F~~~~wv~~~~~~-~~  109 (157)
                      +..++||+.++++|.+++..  .....+.+.|+|++|+|||+||+.+++  .....        ....+|+++.... +.
T Consensus        19 p~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~--~~~~~~~~~~~~~~~~~~~i~~~~~~~~~   96 (384)
T 2qby_B           19 FKEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFN--EIEEVKKEDEEYKDVKQAYVNCREVGGTP   96 (384)
T ss_dssp             CSSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHH--HHHHHHHHSSSSTTCEEEEEEHHHHCSCH
T ss_pred             CCCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHH--HHHHHhhhhcCCCCceEEEEECccCCCCH
Confidence            47899999999999988854  233456899999999999999999998  44222        2356777776666 88


Q ss_pred             HHHHHHHHHHhCCCCCCcccccccHHHHHHHHHHHhcCCcEEEEeeCC
Q 045087          110 DQILDIIIKFLMPSSRLSEIKDKNYEMKKIILHEYLMTKRYLIVIDDV  157 (157)
Q Consensus       110 ~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdV  157 (157)
                      ..++..++.++.+... + ....+...+...+.+.+..++.+|||||+
T Consensus        97 ~~~~~~l~~~l~~~~~-~-~~~~~~~~~~~~l~~~l~~~~~vlilDEi  142 (384)
T 2qby_B           97 QAVLSSLAGKLTGFSV-P-KHGINLGEYIDKIKNGTRNIRAIIYLDEV  142 (384)
T ss_dssp             HHHHHHHHHHHHCSCC-C-SSSSCTHHHHHHHHHHHSSSCEEEEEETT
T ss_pred             HHHHHHHHHHhcCCCC-C-CCCCCHHHHHHHHHHHhccCCCEEEEECH
Confidence            8999999988843211 0 12334567788888888877779999986

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=99.40  E-value=8.4e-12  Score=96.88  Aligned_cols=113  Identities=16%  Similarity=0.098  Sum_probs=84.3

Q ss_pred             CCCCccccHHHHHHHHHHHhc----CCCCceEEEEEeCCCCcHHHHHHHHhcCccccccc-CeeEEEEcCCCCCHHHHHH
Q 045087           40 KSRDTVGLDDRMEELLDLLIE----GPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYF-DCHAWVQEPYTCYADQILD  114 (157)
Q Consensus        40 ~~~~~vGr~~~~~~l~~~L~~----~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F-~~~~wv~~~~~~~~~~~l~  114 (157)
                      .++.++||+.++++|..++..    .....+.+.|+|++|+|||||++.+++  ...... ...+|+++....+...++.
T Consensus        15 ~p~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~--~~~~~~~~~~~~i~~~~~~~~~~~~~   92 (389)
T 1fnn_A           15 VPKRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWE--LYKDKTTARFVYINGFIYRNFTAIIG   92 (389)
T ss_dssp             CCSCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHH--HHTTSCCCEEEEEETTTCCSHHHHHH
T ss_pred             CCCCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHH--HHhhhcCeeEEEEeCccCCCHHHHHH
Confidence            447899999999999998865    222234899999999999999999988  444332 3466778777778889999


Q ss_pred             HHHHHhCCCCCCcccccccHHHHHHHHHHHhc--CCcEEEEeeCC
Q 045087          115 IIIKFLMPSSRLSEIKDKNYEMKKIILHEYLM--TKRYLIVIDDV  157 (157)
Q Consensus       115 ~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~--~kr~LlVlDdV  157 (157)
                      .++..++...+   ....+..++...+...+.  +++.+|+|||+
T Consensus        93 ~l~~~l~~~~~---~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~  134 (389)
T 1fnn_A           93 EIARSLNIPFP---RRGLSRDEFLALLVEHLRERDLYMFLVLDDA  134 (389)
T ss_dssp             HHHHHTTCCCC---SSCCCHHHHHHHHHHHHHHTTCCEEEEEETG
T ss_pred             HHHHHhCccCC---CCCCCHHHHHHHHHHHHhhcCCeEEEEEECc
Confidence            99998865432   123345667777777664  56889999985

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=99.40  E-value=6.6e-13  Score=102.73  Aligned_cols=115  Identities=14%  Similarity=0.122  Sum_probs=83.7

Q ss_pred             CCCCCCccccHHHHHHHHHHHhcC--CCCceEEEEEeCCCCcHHHHHHHHhcCccccccc---CeeEEEEcCCCCCHHHH
Q 045087           38 SSKSRDTVGLDDRMEELLDLLIEG--PPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYF---DCHAWVQEPYTCYADQI  112 (157)
Q Consensus        38 ~~~~~~~vGr~~~~~~l~~~L~~~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F---~~~~wv~~~~~~~~~~~  112 (157)
                      ...+..|+||+.+++.|.+++...  ......+.|+|++|+||||||+.+++  .....+   ...+|+++....+...+
T Consensus        16 ~~~p~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~--~~~~~~~~~~~~~~i~~~~~~~~~~~   93 (386)
T 2qby_A           16 DYIPDELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLS--KLHKKFLGKFKHVYINTRQIDTPYRV   93 (386)
T ss_dssp             SCCCSCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHH--HHHHHTCSSCEEEEEEHHHHCSHHHH
T ss_pred             ccCCCCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHH--HHHHHhcCCceEEEEECCCCCCHHHH
Confidence            344578999999999999988642  23456899999999999999999998  444432   24567776666677888


Q ss_pred             HHHHHHHhCCCCCCcccccccHHHHHHHHHHHhc--CCcEEEEeeCC
Q 045087          113 LDIIIKFLMPSSRLSEIKDKNYEMKKIILHEYLM--TKRYLIVIDDV  157 (157)
Q Consensus       113 l~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~--~kr~LlVlDdV  157 (157)
                      +..++.+++....   ....+..++...+.+.+.  +++++|||||+
T Consensus        94 ~~~i~~~l~~~~~---~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~  137 (386)
T 2qby_A           94 LADLLESLDVKVP---FTGLSIAELYRRLVKAVRDYGSQVVIVLDEI  137 (386)
T ss_dssp             HHHHTTTTSCCCC---SSSCCHHHHHHHHHHHHHTCCSCEEEEEETH
T ss_pred             HHHHHHHhCCCCC---CCCCCHHHHHHHHHHHHhccCCeEEEEEcCh
Confidence            8888887755332   123345666667777664  45899999984

>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}

Probab=99.34  E-value=3.3e-12  Score=97.69  Aligned_cols=108  Identities=8%  Similarity=0.070  Sum_probs=75.7

Q ss_pred             CCCCCccccHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCCC------CCHHHH
Q 045087           39 SKSRDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPYT------CYADQI  112 (157)
Q Consensus        39 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~------~~~~~~  112 (157)
                      ..+..|+||+.++++|.+++..+    +++.|+|++|+|||||++.+++.  .    . .+|+++...      .+...+
T Consensus         9 ~~~~~~~gR~~el~~L~~~l~~~----~~v~i~G~~G~GKT~Ll~~~~~~--~----~-~~~~~~~~~~~~~~~~~~~~~   77 (350)
T 2qen_A            9 TRREDIFDREEESRKLEESLENY----PLTLLLGIRRVGKSSLLRAFLNE--R----P-GILIDCRELYAERGHITREEL   77 (350)
T ss_dssp             CSGGGSCSCHHHHHHHHHHHHHC----SEEEEECCTTSSHHHHHHHHHHH--S----S-EEEEEHHHHHHTTTCBCHHHH
T ss_pred             CChHhcCChHHHHHHHHHHHhcC----CeEEEECCCcCCHHHHHHHHHHH--c----C-cEEEEeecccccccCCCHHHH
Confidence            45678999999999999998763    58999999999999999999883  2    1 667775432      256677


Q ss_pred             HHHHHHHhCCC--------------CCCcccccccHHHHHHHHHHHhcC-CcEEEEeeCC
Q 045087          113 LDIIIKFLMPS--------------SRLSEIKDKNYEMKKIILHEYLMT-KRYLIVIDDV  157 (157)
Q Consensus       113 l~~i~~~l~~~--------------~~~~~~~~~~~~~~~~~l~~~L~~-kr~LlVlDdV  157 (157)
                      +..+...+...              .........+..++...+.+.+.. ++++|||||+
T Consensus        78 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~  137 (350)
T 2qen_A           78 IKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEA  137 (350)
T ss_dssp             HHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETG
T ss_pred             HHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCH
Confidence            77777655420              000001124556677777776643 3899999995

>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20

Probab=99.22  E-value=5.5e-11  Score=90.96  Aligned_cols=107  Identities=10%  Similarity=0.059  Sum_probs=70.0

Q ss_pred             CCCCCccccHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCCC-----CCHHHHH
Q 045087           39 SKSRDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPYT-----CYADQIL  113 (157)
Q Consensus        39 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~-----~~~~~~l  113 (157)
                      ..+..|+||+.+++.|.+ +..     +++.|+|++|+|||+|++.+++  ....   ..+|+++...     .+...++
T Consensus        10 ~~~~~~~gR~~el~~L~~-l~~-----~~v~i~G~~G~GKT~L~~~~~~--~~~~---~~~~~~~~~~~~~~~~~~~~~~   78 (357)
T 2fna_A           10 DNRKDFFDREKEIEKLKG-LRA-----PITLVLGLRRTGKSSIIKIGIN--ELNL---PYIYLDLRKFEERNYISYKDFL   78 (357)
T ss_dssp             CSGGGSCCCHHHHHHHHH-TCS-----SEEEEEESTTSSHHHHHHHHHH--HHTC---CEEEEEGGGGTTCSCCCHHHHH
T ss_pred             CCHHHhcChHHHHHHHHH-hcC-----CcEEEECCCCCCHHHHHHHHHH--hcCC---CEEEEEchhhccccCCCHHHHH
Confidence            356789999999999999 644     5899999999999999999988  3332   2578876532     3455666


Q ss_pred             HHHHHHhCC-------------CC---CCcc----c-----ccccHHHHHHHHHHHhcCCcEEEEeeCC
Q 045087          114 DIIIKFLMP-------------SS---RLSE----I-----KDKNYEMKKIILHEYLMTKRYLIVIDDV  157 (157)
Q Consensus       114 ~~i~~~l~~-------------~~---~~~~----~-----~~~~~~~~~~~l~~~L~~kr~LlVlDdV  157 (157)
                      ..+...+..             ..   ..+.    .     ......++...+.+.-. ++++|||||+
T Consensus        79 ~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~vlvlDe~  146 (357)
T 2fna_A           79 LELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASK-DNVIIVLDEA  146 (357)
T ss_dssp             HHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCS-SCEEEEEETG
T ss_pred             HHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCC-CCeEEEEECH
Confidence            555544311             00   0000    0     12344556666655433 4899999996

>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}

Probab=99.14  E-value=3.7e-10  Score=86.49  Aligned_cols=111  Identities=9%  Similarity=-0.004  Sum_probs=75.8

Q ss_pred             CCccccHHHHHHHHHHHhc--CCCCceEEEEEeCCCCcHHHHHHHHhcCccccccc-------CeeEEEEcCCCCCHHHH
Q 045087           42 RDTVGLDDRMEELLDLLIE--GPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYF-------DCHAWVQEPYTCYADQI  112 (157)
Q Consensus        42 ~~~vGr~~~~~~l~~~L~~--~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F-------~~~~wv~~~~~~~~~~~  112 (157)
                      ..+.||++++++|...|..  .......+.|+|++|+|||++++.+++  ++....       -..+++++....+...+
T Consensus        20 ~~L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~--~L~~~~~~~~~~~~~~v~INc~~~~t~~~~   97 (318)
T 3te6_A           20 ELLKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMD--ELITSSARKELPIFDYIHIDALELAGMDAL   97 (318)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHH--HHHHTTTTTSSCCEEEEEEETTCCC--HHH
T ss_pred             cccCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHH--HHHHHhhhccCCceEEEEEeccccCCHHHH
Confidence            3489999999999888754  234567889999999999999999998  443211       13567777777889999


Q ss_pred             HHHHHHHhCCCCCCcccccccHHHHHHHHHHH--hcCCcEEEEeeCC
Q 045087          113 LDIIIKFLMPSSRLSEIKDKNYEMKKIILHEY--LMTKRYLIVIDDV  157 (157)
Q Consensus       113 l~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~--L~~kr~LlVlDdV  157 (157)
                      +..|+.++.+...   ......+.+...+...  -.+++++++||++
T Consensus        98 ~~~I~~~L~g~~~---~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~  141 (318)
T 3te6_A           98 YEKIWFAISKENL---CGDISLEALNFYITNVPKAKKRKTLILIQNP  141 (318)
T ss_dssp             HHHHHHHHSCCC-----CCCCHHHHHHHHHHSCGGGSCEEEEEEECC
T ss_pred             HHHHHHHhcCCCC---CchHHHHHHHHHHHHhhhccCCceEEEEecH
Confidence            9999999976432   1122233333333332  1456799999985

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=98.98  E-value=3.1e-09  Score=74.02  Aligned_cols=45  Identities=16%  Similarity=0.261  Sum_probs=39.0

Q ss_pred             CCCccccHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087           41 SRDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        41 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ...++|++++++++.+++....  ...+.|+|.+|+|||+||+.+++
T Consensus        21 ~~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~l~~~~~~   65 (195)
T 1jbk_A           21 LDPVIGRDEEIRRTIQVLQRRT--KNNPVLIGEPGVGKTAIVEGLAQ   65 (195)
T ss_dssp             SCCCCSCHHHHHHHHHHHTSSS--SCEEEEECCTTSCHHHHHHHHHH
T ss_pred             ccccccchHHHHHHHHHHhcCC--CCceEEECCCCCCHHHHHHHHHH
Confidence            4679999999999999987643  45678999999999999999987

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=98.96  E-value=9.6e-09  Score=73.09  Aligned_cols=45  Identities=20%  Similarity=0.203  Sum_probs=38.8

Q ss_pred             CCCccccHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087           41 SRDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        41 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ...++|++..++.|.+++....  .+.+.|+|.+|+|||+||+.+++
T Consensus        16 ~~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~l~~~l~~   60 (226)
T 2chg_A           16 LDEVVGQDEVIQRLKGYVERKN--IPHLLFSGPPGTGKTATAIALAR   60 (226)
T ss_dssp             GGGCCSCHHHHHHHHHHHHTTC--CCCEEEECSTTSSHHHHHHHHHH
T ss_pred             HHHHcCcHHHHHHHHHHHhCCC--CCeEEEECCCCCCHHHHHHHHHH
Confidence            4578999999999999997753  33489999999999999999987

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=98.88  E-value=1.2e-08  Score=73.44  Aligned_cols=46  Identities=24%  Similarity=0.185  Sum_probs=39.4

Q ss_pred             CCCccccHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087           41 SRDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        41 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ...++|++..++.|..++..+. ....+.|+|++|+||||||+.+++
T Consensus        22 ~~~~~g~~~~~~~l~~~l~~~~-~~~~~ll~G~~G~GKT~l~~~~~~   67 (250)
T 1njg_A           22 FADVVGQEHVLTALANGLSLGR-IHHAYLFSGTRGVGKTSIARLLAK   67 (250)
T ss_dssp             GGGCCSCHHHHHHHHHHHHHTC-CCSEEEEECSTTSCHHHHHHHHHH
T ss_pred             HHHHhCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHH
Confidence            4569999999999999997653 234788999999999999999987

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=98.80  E-value=9.4e-09  Score=71.43  Aligned_cols=45  Identities=18%  Similarity=0.242  Sum_probs=38.7

Q ss_pred             CCCccccHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087           41 SRDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        41 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ...++|++.+++.+.+.+....  ...+.|+|.+|+|||+||+.+++
T Consensus        21 ~~~~~g~~~~~~~l~~~l~~~~--~~~vll~G~~G~GKT~la~~~~~   65 (187)
T 2p65_A           21 LDPVIGRDTEIRRAIQILSRRT--KNNPILLGDPGVGKTAIVEGLAI   65 (187)
T ss_dssp             SCCCCSCHHHHHHHHHHHTSSS--SCEEEEESCGGGCHHHHHHHHHH
T ss_pred             cchhhcchHHHHHHHHHHhCCC--CCceEEECCCCCCHHHHHHHHHH
Confidence            4579999999999999987643  45678999999999999999987

>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=98.73  E-value=3.7e-08  Score=74.39  Aligned_cols=45  Identities=20%  Similarity=0.266  Sum_probs=38.9

Q ss_pred             CCCccccHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087           41 SRDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        41 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ...++|++..++.|.+++..+.  .+.+.++|++|+|||++|+.+++
T Consensus        20 ~~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKt~la~~l~~   64 (323)
T 1sxj_B           20 LSDIVGNKETIDRLQQIAKDGN--MPHMIISGMPGIGKTTSVHCLAH   64 (323)
T ss_dssp             GGGCCSCTHHHHHHHHHHHSCC--CCCEEEECSTTSSHHHHHHHHHH
T ss_pred             HHHHHCCHHHHHHHHHHHHcCC--CCeEEEECcCCCCHHHHHHHHHH
Confidence            4679999999999999997754  33388999999999999999988

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=98.66  E-value=4.5e-08  Score=73.10  Aligned_cols=49  Identities=18%  Similarity=0.250  Sum_probs=39.6

Q ss_pred             CCCCCccccHHHHHHHHHHHhcC-----------CCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087           39 SKSRDTVGLDDRMEELLDLLIEG-----------PPQLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        39 ~~~~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ...++++|.+..+++|.+.+...           ......+.|+|++|+|||+||+.+++
T Consensus        14 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~   73 (285)
T 3h4m_A           14 VRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVAT   73 (285)
T ss_dssp             CCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHH
T ss_pred             CCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHH
Confidence            34567999999999998887431           12345789999999999999999988

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=98.57  E-value=2.2e-07  Score=65.93  Aligned_cols=61  Identities=16%  Similarity=0.056  Sum_probs=39.1

Q ss_pred             CCCccccH----HHHHHHHHHHhcCCCC--ceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEc
Q 045087           41 SRDTVGLD----DRMEELLDLLIEGPPQ--LSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQE  103 (157)
Q Consensus        41 ~~~~vGr~----~~~~~l~~~L~~~~~~--~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~  103 (157)
                      -++|++..    ..++.+.+++......  ...+.|+|.+|+|||+||+.+++  .........+|+++
T Consensus        24 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~--~~~~~~~~~~~~~~   90 (202)
T 2w58_A           24 LSDVDLNDDGRIKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIAN--ELAKRNVSSLIVYV   90 (202)
T ss_dssp             TTSSCCSSHHHHHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHH--HHHTTTCCEEEEEH
T ss_pred             HhhccCCChhHHHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHH--HHHHcCCeEEEEEh
Confidence            34555533    3445556666543221  26889999999999999999998  44444444556654

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=98.56  E-value=4.3e-07  Score=66.72  Aligned_cols=48  Identities=17%  Similarity=0.185  Sum_probs=37.0

Q ss_pred             CCCCccccHHHHHHHHHHHhc---CC-------CCceEEEEEeCCCCcHHHHHHHHhc
Q 045087           40 KSRDTVGLDDRMEELLDLLIE---GP-------PQLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        40 ~~~~~vGr~~~~~~l~~~L~~---~~-------~~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ..++++|.+..++.|.+++..   ..       .....+.++|.+|+|||++|+.+++
T Consensus         4 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~   61 (262)
T 2qz4_A            4 SFKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVAT   61 (262)
T ss_dssp             CTTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHH
T ss_pred             CHHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHH
Confidence            346789999988888776532   11       2345688999999999999999988

>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20

Probab=98.54  E-value=1.4e-07  Score=71.35  Aligned_cols=45  Identities=20%  Similarity=0.251  Sum_probs=39.2

Q ss_pred             CCCccccHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087           41 SRDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        41 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ..+++|++..++.|.+++..+.  .+.+.++|++|+|||++|+.+++
T Consensus        24 ~~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~la~~l~~   68 (327)
T 1iqp_A           24 LDDIVGQEHIVKRLKHYVKTGS--MPHLLFAGPPGVGKTTAALALAR   68 (327)
T ss_dssp             TTTCCSCHHHHHHHHHHHHHTC--CCEEEEESCTTSSHHHHHHHHHH
T ss_pred             HHHhhCCHHHHHHHHHHHHcCC--CCeEEEECcCCCCHHHHHHHHHH
Confidence            4569999999999999997753  34589999999999999999988

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C

Probab=98.49  E-value=4.1e-07  Score=69.41  Aligned_cols=48  Identities=23%  Similarity=0.296  Sum_probs=38.8

Q ss_pred             CCCCccccHHHHHHHHHHHh----------cCCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087           40 KSRDTVGLDDRMEELLDLLI----------EGPPQLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        40 ~~~~~vGr~~~~~~l~~~L~----------~~~~~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ...+++|.+..+++|.+.+.          ......+-+.++|.+|+|||+||+++++
T Consensus        16 ~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~   73 (322)
T 3eie_A           16 KWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVAT   73 (322)
T ss_dssp             CGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHH
T ss_pred             CHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHH
Confidence            45679999999999998873          1112345789999999999999999988

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=98.48  E-value=8.2e-07  Score=67.15  Aligned_cols=48  Identities=27%  Similarity=0.266  Sum_probs=38.7

Q ss_pred             CCCCccccHHHHHHHHHHHhc-----------CCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087           40 KSRDTVGLDDRMEELLDLLIE-----------GPPQLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        40 ~~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ...+++|.+..+++|.+++..           +-.....+.++|++|+|||+||+.+++
T Consensus        13 ~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~   71 (301)
T 3cf0_A           13 TWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIAN   71 (301)
T ss_dssp             CGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHH
T ss_pred             CHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHH
Confidence            345799999999999887743           123356789999999999999999998

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=98.46  E-value=9.9e-07  Score=66.15  Aligned_cols=48  Identities=19%  Similarity=0.216  Sum_probs=38.6

Q ss_pred             CCCCccccHHHHHHHHHHHhcC----------CCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087           40 KSRDTVGLDDRMEELLDLLIEG----------PPQLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        40 ~~~~~vGr~~~~~~l~~~L~~~----------~~~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ...+++|.+..++.|.+++...          ......+.|+|++|+|||++|+.++.
T Consensus        19 ~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~   76 (297)
T 3b9p_A           19 EWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVAT   76 (297)
T ss_dssp             CGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHH
T ss_pred             CHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHH
Confidence            3467999999999998887421          11246789999999999999999988

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=98.45  E-value=2.1e-06  Score=65.63  Aligned_cols=48  Identities=23%  Similarity=0.327  Sum_probs=38.3

Q ss_pred             CCCCccccHHHHHHHHHHHhc---------C-CCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087           40 KSRDTVGLDDRMEELLDLLIE---------G-PPQLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        40 ~~~~~vGr~~~~~~l~~~L~~---------~-~~~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ..++++|.+..++.|.+.+..         + ....+.+.++|++|+|||+||+++++
T Consensus        10 ~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~   67 (322)
T 1xwi_A           10 KWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVAT   67 (322)
T ss_dssp             CGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHH
T ss_pred             CHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHH
Confidence            456799999999999887631         1 12346788999999999999999998

>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=98.43  E-value=1e-06  Score=71.43  Aligned_cols=48  Identities=17%  Similarity=0.151  Sum_probs=40.0

Q ss_pred             CCCCccccHHHHHHHHHHHhcC---------------CCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087           40 KSRDTVGLDDRMEELLDLLIEG---------------PPQLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        40 ~~~~~vGr~~~~~~l~~~L~~~---------------~~~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ...+++|++..+++|.+|+...               ....+.+.|+|++|+|||++|+.+++
T Consensus        37 ~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~   99 (516)
T 1sxj_A           37 NLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQ   99 (516)
T ss_dssp             SGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHH
T ss_pred             CHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHH
Confidence            3467999999999999999641               01346899999999999999999988

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=98.41  E-value=3.1e-06  Score=60.37  Aligned_cols=99  Identities=15%  Similarity=0.020  Sum_probs=57.3

Q ss_pred             HHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCCCCCHHHHHHHHHHHhCCCC-------C
Q 045087           53 ELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPYTCYADQILDIIIKFLMPSS-------R  125 (157)
Q Consensus        53 ~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~l~~i~~~l~~~~-------~  125 (157)
                      .|-+++..+-....++.|+|.+|+|||||+..+..     ..-...+|++....++...+.. ++..++...       .
T Consensus         8 ~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~-----~~~~~v~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~   81 (220)
T 2cvh_A            8 SLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL-----LSGKKVAYVDTEGGFSPERLVQ-MAETRGLNPEEALSRFI   81 (220)
T ss_dssp             HHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH-----HHCSEEEEEESSCCCCHHHHHH-HHHTTTCCHHHHHHHEE
T ss_pred             HHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH-----HcCCcEEEEECCCCCCHHHHHH-HHHhcCCChHHHhhcEE
Confidence            34444433334456999999999999999998876     1224577888776566655443 333222100       0


Q ss_pred             Ccc-cccccHHHHHHHHHHHhcCCcEEEEeeCC
Q 045087          126 LSE-IKDKNYEMKKIILHEYLMTKRYLIVIDDV  157 (157)
Q Consensus       126 ~~~-~~~~~~~~~~~~l~~~L~~kr~LlVlDdV  157 (157)
                      ... .......+.+..++..+..+.-+||||.+
T Consensus        82 ~~~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~  114 (220)
T 2cvh_A           82 LFTPSDFKEQRRVIGSLKKTVDSNFALVVVDSI  114 (220)
T ss_dssp             EECCTTTSHHHHHHHHHHHHCCTTEEEEEEECC
T ss_pred             EEecCCHHHHHHHHHHHHHHhhcCCCEEEEcCc
Confidence            000 11112244566666666555779999974

>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*

Probab=98.40  E-value=2e-06  Score=65.35  Aligned_cols=47  Identities=15%  Similarity=0.031  Sum_probs=39.4

Q ss_pred             CCCCccccHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087           40 KSRDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        40 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ..++++|.+..++.|.+++..+. ...++.+.|++|+|||++|+.+.+
T Consensus        24 ~~~~ivg~~~~~~~l~~~l~~~~-~~~~~L~~G~~G~GKT~la~~la~   70 (324)
T 3u61_B           24 TIDECILPAFDKETFKSITSKGK-IPHIILHSPSPGTGKTTVAKALCH   70 (324)
T ss_dssp             STTTSCCCHHHHHHHHHHHHTTC-CCSEEEECSSTTSSHHHHHHHHHH
T ss_pred             CHHHHhCcHHHHHHHHHHHHcCC-CCeEEEeeCcCCCCHHHHHHHHHH
Confidence            34679999999999999998653 235677788899999999999988

>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*

Probab=98.40  E-value=1.3e-06  Score=69.53  Aligned_cols=51  Identities=18%  Similarity=0.229  Sum_probs=33.7

Q ss_pred             CCcc-ccHH--HHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhcCccccccc
Q 045087           42 RDTV-GLDD--RMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYF   95 (157)
Q Consensus        42 ~~~v-Gr~~--~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F   95 (157)
                      ++|+ |...  ....+......... ...+.|+|.+|+||||||+.+++  .+...|
T Consensus       105 d~fv~g~~n~~a~~~~~~~a~~~~~-~~~lll~Gp~G~GKTtLa~aia~--~l~~~~  158 (440)
T 2z4s_A          105 ENFVVGPGNSFAYHAALEVAKHPGR-YNPLFIYGGVGLGKTHLLQSIGN--YVVQNE  158 (440)
T ss_dssp             GGCCCCTTTHHHHHHHHHHHHSTTS-SCCEEEECSSSSSHHHHHHHHHH--HHHHHC
T ss_pred             hhcCCCCchHHHHHHHHHHHhCCCC-CCeEEEECCCCCCHHHHHHHHHH--HHHHhC
Confidence            4565 6433  33444444444332 66899999999999999999998  554443

>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}

Probab=98.40  E-value=8.6e-07  Score=68.66  Aligned_cols=48  Identities=13%  Similarity=0.115  Sum_probs=38.8

Q ss_pred             CCCCccccHHHHHHHHHHHhc----------CCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087           40 KSRDTVGLDDRMEELLDLLIE----------GPPQLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        40 ~~~~~vGr~~~~~~l~~~L~~----------~~~~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ...+++|.+..+++|.+.+..          .......+.|+|.+|+|||+||+.+++
T Consensus        82 ~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~  139 (357)
T 3d8b_A           82 NWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIAS  139 (357)
T ss_dssp             CGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHH
T ss_pred             CHHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHH
Confidence            345799999999999888742          112356789999999999999999988

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=98.39  E-value=1.9e-06  Score=63.38  Aligned_cols=48  Identities=23%  Similarity=0.218  Sum_probs=36.0

Q ss_pred             CCCCccccHHHHHHHHHHHhc---C-------CCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087           40 KSRDTVGLDDRMEELLDLLIE---G-------PPQLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        40 ~~~~~vGr~~~~~~l~~~L~~---~-------~~~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ..++++|.+..+++|.+++..   .       ....+-+.|+|.+|+||||||+.+++
T Consensus        10 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~   67 (257)
T 1lv7_A           10 TFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAG   67 (257)
T ss_dssp             CGGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHH
Confidence            446789999888887765431   1       11234588999999999999999988

>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*

Probab=98.39  E-value=3.9e-06  Score=64.61  Aligned_cols=47  Identities=30%  Similarity=0.243  Sum_probs=37.0

Q ss_pred             CCCccccHHHHHHH---HHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087           41 SRDTVGLDDRMEEL---LDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        41 ~~~~vGr~~~~~~l---~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      .+.++|++..++.+   ...+..+......+.|+|++|+|||++|+.+.+
T Consensus        43 ~~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~   92 (368)
T 3uk6_A           43 SQGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQ   92 (368)
T ss_dssp             ETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHH
T ss_pred             hhhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHH
Confidence            46799999987775   444444443346899999999999999999988

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=98.37  E-value=2.5e-06  Score=64.90  Aligned_cols=47  Identities=19%  Similarity=0.142  Sum_probs=32.5

Q ss_pred             CCCcc-cc--HHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087           41 SRDTV-GL--DDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        41 ~~~~v-Gr--~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      .++|+ |.  ......+..++.........+.|+|++|+||||||+.+++
T Consensus        10 f~~fv~g~~~~~a~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~   59 (324)
T 1l8q_A           10 LENFIVGEGNRLAYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGN   59 (324)
T ss_dssp             SSSCCCCTTTHHHHHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHH
T ss_pred             cccCCCCCcHHHHHHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHH
Confidence            34555 43  3334555555555433456789999999999999999988

>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}

Probab=98.36  E-value=1.2e-06  Score=66.92  Aligned_cols=48  Identities=17%  Similarity=0.156  Sum_probs=39.7

Q ss_pred             CCCCccccHHHHHHHHHHHhcC---CCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087           40 KSRDTVGLDDRMEELLDLLIEG---PPQLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        40 ~~~~~vGr~~~~~~l~~~L~~~---~~~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ...+++|++..+++|..++...   ......+.|+|.+|+|||+||+.+++
T Consensus        27 ~~~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~   77 (338)
T 3pfi_A           27 NFDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISY   77 (338)
T ss_dssp             SGGGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHH
T ss_pred             CHHHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHH
Confidence            3467999999999999988642   23445689999999999999999987

>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*

Probab=98.36  E-value=2.2e-06  Score=65.96  Aligned_cols=46  Identities=24%  Similarity=0.185  Sum_probs=38.9

Q ss_pred             CCCccccHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087           41 SRDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        41 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ..+++|++..++.|.+.+..+. ....+.|+|.+|+||||+|+.+.+
T Consensus        15 ~~~~vg~~~~~~~L~~~l~~~~-~~~~~ll~G~~G~GKT~la~~la~   60 (373)
T 1jr3_A           15 FADVVGQEHVLTALANGLSLGR-IHHAYLFSGTRGVGKTSIARLLAK   60 (373)
T ss_dssp             TTTSCSCHHHHHHHHHHHHHTC-CCSEEEEESCTTSSHHHHHHHHHH
T ss_pred             hhhccCcHHHHHHHHHHHHhCC-CCeEEEEECCCCCCHHHHHHHHHH
Confidence            3569999999999999997653 234678999999999999999977

>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*

Probab=98.35  E-value=4.5e-07  Score=68.67  Aligned_cols=69  Identities=14%  Similarity=0.103  Sum_probs=46.9

Q ss_pred             CCCCccccHHHHHHHHHHHhc---CCCCceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCCCCCHHHHH
Q 045087           40 KSRDTVGLDDRMEELLDLLIE---GPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPYTCYADQIL  113 (157)
Q Consensus        40 ~~~~~vGr~~~~~~l~~~L~~---~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~l  113 (157)
                      ....++|++..++.|..++..   .......+.|+|++|+|||++|+.+++  .....   ..+++.+......++.
T Consensus        10 ~~~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~--~~~~~---~~~~~~~~~~~~~~l~   81 (324)
T 1hqc_A           10 TLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAH--ELGVN---LRVTSGPAIEKPGDLA   81 (324)
T ss_dssp             STTTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHH--HHTCC---EEEECTTTCCSHHHHH
T ss_pred             cHHHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHH--HhCCC---EEEEeccccCChHHHH
Confidence            346799999999999888753   112345788999999999999999988  33322   2345544443444433

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=98.34  E-value=1e-06  Score=66.34  Aligned_cols=45  Identities=13%  Similarity=0.117  Sum_probs=35.7

Q ss_pred             CccccHHHHHHHHHHHhcC-------------CCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087           43 DTVGLDDRMEELLDLLIEG-------------PPQLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        43 ~~vGr~~~~~~l~~~L~~~-------------~~~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      .++|.+..++.|.+++...             ......+.|+|.+|+|||++|+.+++
T Consensus        32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~   89 (309)
T 3syl_A           32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAG   89 (309)
T ss_dssp             HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHH
T ss_pred             HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHH
Confidence            5899999998888776421             23345789999999999999998877

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=98.33  E-value=1e-06  Score=61.42  Aligned_cols=41  Identities=15%  Similarity=0.136  Sum_probs=29.6

Q ss_pred             cHHHHHHHHHHHhcCC-CCceEEEEEeCCCCcHHHHHHHHhc
Q 045087           47 LDDRMEELLDLLIEGP-PQLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        47 r~~~~~~l~~~L~~~~-~~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ....++.+.+++..-. .....+.|+|++|+||||||+.+++
T Consensus        19 ~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~   60 (180)
T 3ec2_A           19 QNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLK   60 (180)
T ss_dssp             HHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHH
Confidence            4445555555554322 2356899999999999999999988

>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}

Probab=98.31  E-value=3.3e-06  Score=67.42  Aligned_cols=46  Identities=17%  Similarity=0.223  Sum_probs=38.9

Q ss_pred             CCCCccccHHHH---HHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087           40 KSRDTVGLDDRM---EELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        40 ~~~~~vGr~~~~---~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ...+++|.+..+   ..|...+..+.  ...+.++|.+|+||||||+.+++
T Consensus        24 ~l~~ivGq~~~~~~~~~L~~~i~~~~--~~~vLL~GppGtGKTtlAr~ia~   72 (447)
T 3pvs_A           24 NLAQYIGQQHLLAAGKPLPRAIEAGH--LHSMILWGPPGTGKTTLAEVIAR   72 (447)
T ss_dssp             STTTCCSCHHHHSTTSHHHHHHHHTC--CCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CHHHhCCcHHHHhchHHHHHHHHcCC--CcEEEEECCCCCcHHHHHHHHHH
Confidence            446799999888   77888787654  46789999999999999999988

>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*

Probab=98.30  E-value=1.4e-06  Score=67.50  Aligned_cols=48  Identities=23%  Similarity=0.282  Sum_probs=37.9

Q ss_pred             CCCCccccHHHHHHHHHHHhc----------CCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087           40 KSRDTVGLDDRMEELLDLLIE----------GPPQLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        40 ~~~~~vGr~~~~~~l~~~L~~----------~~~~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ...+++|.+..++.|.+.+..          .....+-+.++|++|+|||+||+.+++
T Consensus        49 ~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~  106 (355)
T 2qp9_X           49 KWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVAT  106 (355)
T ss_dssp             CGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHH
T ss_pred             CHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHH
Confidence            346799999999999887731          112234588999999999999999998

>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.29  E-value=4.7e-06  Score=66.28  Aligned_cols=52  Identities=21%  Similarity=0.273  Sum_probs=40.1

Q ss_pred             CCccccHHHHHHHHHHHhc-----------CCCCceEEEEEeCCCCcHHHHHHHHhcCccccccc
Q 045087           42 RDTVGLDDRMEELLDLLIE-----------GPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYF   95 (157)
Q Consensus        42 ~~~vGr~~~~~~l~~~L~~-----------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F   95 (157)
                      +++.|.++.+++|.+.+..           +-...+-+.++|++|+|||+||+++++  +...+|
T Consensus       181 ~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~--e~~~~~  243 (437)
T 4b4t_L          181 DGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAA--TIGANF  243 (437)
T ss_dssp             GGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHH--HHTCEE
T ss_pred             hHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHH--HhCCCE
Confidence            5688999999998887642           123456788999999999999999998  444333

>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20

Probab=98.29  E-value=2.1e-06  Score=73.57  Aligned_cols=45  Identities=16%  Similarity=0.326  Sum_probs=38.2

Q ss_pred             CCCccccHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087           41 SRDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        41 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ...++||+.+++.+...|....  ...+.++|.+|+|||++|+.+++
T Consensus       169 ld~viGr~~~i~~l~~~l~~~~--~~~vlL~G~pG~GKT~la~~la~  213 (854)
T 1qvr_A          169 LDPVIGRDEEIRRVIQILLRRT--KNNPVLIGEPGVGKTAIVEGLAQ  213 (854)
T ss_dssp             SCCCCSCHHHHHHHHHHHHCSS--CCCCEEEECTTSCHHHHHHHHHH
T ss_pred             CcccCCcHHHHHHHHHHHhcCC--CCceEEEcCCCCCHHHHHHHHHH
Confidence            3568999999999999987643  33568999999999999999987

>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}

Probab=98.29  E-value=3.9e-06  Score=65.58  Aligned_cols=48  Identities=21%  Similarity=0.225  Sum_probs=38.5

Q ss_pred             CCCCccccHHHHHHHHHHHhcC----------CCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087           40 KSRDTVGLDDRMEELLDLLIEG----------PPQLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        40 ~~~~~vGr~~~~~~l~~~L~~~----------~~~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ...+++|.+..++.|.+++...          ......+.|+|.+|+|||+||+.+++
T Consensus       113 ~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~  170 (389)
T 3vfd_A          113 KFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAA  170 (389)
T ss_dssp             CGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHH
T ss_pred             ChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHH
Confidence            3467999999999999887320          11246789999999999999999987

>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A

Probab=98.25  E-value=1.3e-06  Score=65.64  Aligned_cols=45  Identities=20%  Similarity=0.203  Sum_probs=38.1

Q ss_pred             CCCccccHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087           41 SRDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        41 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ..+++|++..++.|.+++..+.  .+.+.++|++|+|||++|+.+++
T Consensus        16 ~~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKt~la~~l~~   60 (319)
T 2chq_A           16 LDEVVGQDEVIQRLKGYVERKN--IPHLLFSGPPGTGKTATAIALAR   60 (319)
T ss_dssp             GGGSCSCHHHHHHHHTTTTTTC--CCCEEEESSSSSSHHHHHHHHHH
T ss_pred             HHHHhCCHHHHHHHHHHHhCCC--CCeEEEECcCCcCHHHHHHHHHH
Confidence            4569999999999998887643  33488999999999999999987

>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A

Probab=98.25  E-value=2.9e-06  Score=67.58  Aligned_cols=48  Identities=23%  Similarity=0.327  Sum_probs=38.4

Q ss_pred             CCCCccccHHHHHHHHHHHhc---------C-CCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087           40 KSRDTVGLDDRMEELLDLLIE---------G-PPQLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        40 ~~~~~vGr~~~~~~l~~~L~~---------~-~~~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ..++++|.+..++.|.+.+..         + ....+.+.++|++|+|||+||+.+++
T Consensus       132 ~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~  189 (444)
T 2zan_A          132 KWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVAT  189 (444)
T ss_dssp             CGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHH
T ss_pred             CHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHH
Confidence            346799999999999887731         0 12346788999999999999999998

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=98.23  E-value=1.7e-06  Score=58.45  Aligned_cols=46  Identities=13%  Similarity=0.032  Sum_probs=35.5

Q ss_pred             CccccHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhcC
Q 045087           43 DTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSS   88 (157)
Q Consensus        43 ~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~   88 (157)
                      .++|+...++++.+.+..-......|.|+|.+|+|||++|+.+++.
T Consensus         2 ~iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~   47 (145)
T 3n70_A            2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQF   47 (145)
T ss_dssp             --CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHS
T ss_pred             CceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHh
Confidence            5789999999998887542222345789999999999999999883

>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*

Probab=98.22  E-value=4.1e-06  Score=66.85  Aligned_cols=48  Identities=21%  Similarity=0.119  Sum_probs=37.3

Q ss_pred             CCCCccccHHHHHHHHHHH---hcCCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087           40 KSRDTVGLDDRMEELLDLL---IEGPPQLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        40 ~~~~~vGr~~~~~~l~~~L---~~~~~~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ..+.++|.++.++.+..++   ..+....+-+.++|++|+|||+||+.+.+
T Consensus        35 ~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~   85 (456)
T 2c9o_A           35 AASGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQ   85 (456)
T ss_dssp             EETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHH
T ss_pred             chhhccCHHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHH
Confidence            3478999999988765554   33333345688999999999999999988

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=98.21  E-value=5.7e-06  Score=61.35  Aligned_cols=47  Identities=21%  Similarity=0.179  Sum_probs=35.2

Q ss_pred             CCCccccHHHHHHHHH-------HHhc-CCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087           41 SRDTVGLDDRMEELLD-------LLIE-GPPQLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        41 ~~~~vGr~~~~~~l~~-------~L~~-~~~~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ...++|....++++..       .+.. .......+.|+|.+|+|||+||+.+++
T Consensus        32 ~~~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~   86 (272)
T 1d2n_A           32 MNGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAE   86 (272)
T ss_dssp             TTCCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHH
T ss_pred             hcCCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHH
Confidence            3467888777666665       2321 234567889999999999999999988

>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.21  E-value=2.4e-06  Score=67.22  Aligned_cols=52  Identities=21%  Similarity=0.241  Sum_probs=39.9

Q ss_pred             CCccccHHHHHHHHHHHhc-----------CCCCceEEEEEeCCCCcHHHHHHHHhcCccccccc
Q 045087           42 RDTVGLDDRMEELLDLLIE-----------GPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYF   95 (157)
Q Consensus        42 ~~~vGr~~~~~~l~~~L~~-----------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F   95 (157)
                      +++.|.++.+++|.+.+..           +-...+-+.++|++|+|||.||+++++  +....|
T Consensus       148 ~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~--e~~~~f  210 (405)
T 4b4t_J          148 DMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAH--HTDCKF  210 (405)
T ss_dssp             GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHH--HHTCEE
T ss_pred             HHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHH--hhCCCc
Confidence            5688999999999877642           123345688999999999999999998  454443

>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*

Probab=98.20  E-value=3.6e-06  Score=67.92  Aligned_cols=46  Identities=13%  Similarity=0.162  Sum_probs=37.9

Q ss_pred             CCccccHHHHHHHHHHHhcC-----------CCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087           42 RDTVGLDDRMEELLDLLIEG-----------PPQLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        42 ~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ..++|.+..+++|.+++...           .....-+.|+|.+|+|||++|+++++
T Consensus       204 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~  260 (489)
T 3hu3_A          204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN  260 (489)
T ss_dssp             GGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHH
Confidence            56899999999998887531           23345688999999999999999988

>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.20  E-value=3.5e-06  Score=67.31  Aligned_cols=52  Identities=21%  Similarity=0.251  Sum_probs=40.4

Q ss_pred             CCccccHHHHHHHHHHHhc-----------CCCCceEEEEEeCCCCcHHHHHHHHhcCccccccc
Q 045087           42 RDTVGLDDRMEELLDLLIE-----------GPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYF   95 (157)
Q Consensus        42 ~~~vGr~~~~~~l~~~L~~-----------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F   95 (157)
                      +++.|.++.+++|.+.+..           +-...+-|.++|++|+|||+||+++++  +....|
T Consensus       209 ~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~--e~~~~f  271 (467)
T 4b4t_H          209 SDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVAN--RTDATF  271 (467)
T ss_dssp             SSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHH--HHTCEE
T ss_pred             HHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHh--ccCCCe
Confidence            5789999999999876532           223456788999999999999999998  554443

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.19  E-value=3.9e-06  Score=66.63  Aligned_cols=52  Identities=23%  Similarity=0.235  Sum_probs=39.9

Q ss_pred             CCccccHHHHHHHHHHHhc-----------CCCCceEEEEEeCCCCcHHHHHHHHhcCccccccc
Q 045087           42 RDTVGLDDRMEELLDLLIE-----------GPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYF   95 (157)
Q Consensus        42 ~~~vGr~~~~~~l~~~L~~-----------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F   95 (157)
                      +++.|.++..++|.+.+..           +-...+-+.++|++|+|||+||+++++  +...+|
T Consensus       172 ~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~--~~~~~~  234 (428)
T 4b4t_K          172 ADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVAN--STKAAF  234 (428)
T ss_dssp             GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHH--HHTCEE
T ss_pred             HHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHH--HhCCCe
Confidence            5789999999999887642           123345688999999999999999998  444333

>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}

Probab=98.19  E-value=9.9e-06  Score=62.85  Aligned_cols=99  Identities=19%  Similarity=0.050  Sum_probs=62.4

Q ss_pred             HHHHHHHh-cCCCCceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCCCCCHHHHHHHHHHHhCCCCCC-ccc
Q 045087           52 EELLDLLI-EGPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPYTCYADQILDIIIKFLMPSSRL-SEI  129 (157)
Q Consensus        52 ~~l~~~L~-~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~l~~i~~~l~~~~~~-~~~  129 (157)
                      ..|-..|. .+-....++.|+|.+|+||||||..+..  .....=..++|++....++..     .+..++..... .-.
T Consensus        47 ~~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~--~~~~~gg~VlyId~E~s~~~~-----ra~rlgv~~~~l~i~  119 (356)
T 3hr8_A           47 LAIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIA--EAQKMGGVAAFIDAEHALDPV-----YAKNLGVDLKSLLIS  119 (356)
T ss_dssp             HHHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHH--HHHHTTCCEEEEESSCCCCHH-----HHHHHTCCGGGCEEE
T ss_pred             HHHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHH--HHHhcCCeEEEEecccccchH-----HHHHcCCchhhhhhh
Confidence            45555554 3334567999999999999999998887  333222346788877766654     34555442110 002


Q ss_pred             ccccHHHHHHHHHHHhc-CCcEEEEeeCC
Q 045087          130 KDKNYEMKKIILHEYLM-TKRYLIVIDDV  157 (157)
Q Consensus       130 ~~~~~~~~~~~l~~~L~-~kr~LlVlDdV  157 (157)
                      ...+.++.+..+...++ .+.-++|+|.|
T Consensus       120 ~~~~~e~~l~~~~~l~~~~~~dlvVIDSi  148 (356)
T 3hr8_A          120 QPDHGEQALEIVDELVRSGVVDLIVVDSV  148 (356)
T ss_dssp             CCSSHHHHHHHHHHHHHTSCCSEEEEECT
T ss_pred             hccCHHHHHHHHHHHhhhcCCCeEEehHh
Confidence            23456677777776664 45568999975

>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*

Probab=98.17  E-value=1.1e-05  Score=68.03  Aligned_cols=45  Identities=18%  Similarity=0.228  Sum_probs=38.5

Q ss_pred             CCCccccHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087           41 SRDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        41 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ...++||+.+++.+.+.|....  ...+.++|.+|+|||++|+.+++
T Consensus       185 ~d~~iGr~~~i~~l~~~l~~~~--~~~vlL~G~~GtGKT~la~~la~  229 (758)
T 1r6b_X          185 IDPLIGREKELERAIQVLCRRR--KNNPLLVGESGVGKTAIAEGLAW  229 (758)
T ss_dssp             SCCCCSCHHHHHHHHHHHTSSS--SCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCccCCHHHHHHHHHHHhccC--CCCeEEEcCCCCCHHHHHHHHHH
Confidence            3578999999999999887643  34678999999999999999987

>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.16  E-value=3.3e-06  Score=67.16  Aligned_cols=53  Identities=25%  Similarity=0.335  Sum_probs=40.3

Q ss_pred             CCCccccHHHHHHHHHHHhc-----------CCCCceEEEEEeCCCCcHHHHHHHHhcCccccccc
Q 045087           41 SRDTVGLDDRMEELLDLLIE-----------GPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYF   95 (157)
Q Consensus        41 ~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F   95 (157)
                      .+++.|.++.+++|.+.+..           +-...+-+.++|++|+|||.||+++++  +...+|
T Consensus       180 ~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~--e~~~~f  243 (434)
T 4b4t_M          180 YSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAA--QTNATF  243 (434)
T ss_dssp             GGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHH--HHTCEE
T ss_pred             hHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHH--HhCCCE
Confidence            36789999999999876531           123456788999999999999999998  444433

>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*

Probab=98.14  E-value=1.1e-05  Score=64.94  Aligned_cols=48  Identities=19%  Similarity=0.252  Sum_probs=36.4

Q ss_pred             CCCCccccHHHHHHHHHHHhc--C--------CCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087           40 KSRDTVGLDDRMEELLDLLIE--G--------PPQLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        40 ~~~~~vGr~~~~~~l~~~L~~--~--------~~~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ...+++|.++.+++|.+++..  .        ....+-+.++|++|+|||+||+.++.
T Consensus        14 ~f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~   71 (476)
T 2ce7_A           14 TFKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAG   71 (476)
T ss_dssp             CGGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHH
T ss_pred             CHHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHH
Confidence            345799999988888776532  1        11223488999999999999999988

>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*

Probab=98.13  E-value=1.4e-05  Score=60.96  Aligned_cols=105  Identities=19%  Similarity=0.138  Sum_probs=61.6

Q ss_pred             HHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhcCcccccc----cCeeEEEEcCCCCCHHHHHHHHHHHhCCCCC--
Q 045087           52 EELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHY----FDCHAWVQEPYTCYADQILDIIIKFLMPSSR--  125 (157)
Q Consensus        52 ~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----F~~~~wv~~~~~~~~~~~l~~i~~~l~~~~~--  125 (157)
                      ..|-.+|..+-....++.|+|.+|+|||+||..+.........    -..++|++....++..++... +..++.+..  
T Consensus        94 ~~LD~~L~GGl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~-~~~~g~~~~~~  172 (324)
T 2z43_A           94 QALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENM-AKALGLDIDNV  172 (324)
T ss_dssp             HHHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHH-HHHTTCCHHHH
T ss_pred             hhHHHhcCCCCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHH-HHHhCCCHHHH
Confidence            3344444333234569999999999999999888763211111    246789998888777766543 445443210  


Q ss_pred             ---CcccccccHH---HHHHHHHHHhc--CCcEEEEeeCC
Q 045087          126 ---LSEIKDKNYE---MKKIILHEYLM--TKRYLIVIDDV  157 (157)
Q Consensus       126 ---~~~~~~~~~~---~~~~~l~~~L~--~kr~LlVlDdV  157 (157)
                         ..-....+.+   +++..+...++  .+.-+||+|.+
T Consensus       173 ~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl  212 (324)
T 2z43_A          173 MNNIYYIRAINTDHQIAIVDDLQELVSKDPSIKLIVVDSV  212 (324)
T ss_dssp             HHTEEEEECCSHHHHHHHHHHHHHHHHHCTTEEEEEETTT
T ss_pred             hccEEEEeCCCHHHHHHHHHHHHHHHHhccCCCEEEEeCc
Confidence               0001112223   45566666664  45679999975

>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A

Probab=98.12  E-value=2.4e-05  Score=60.29  Aligned_cols=105  Identities=12%  Similarity=0.076  Sum_probs=61.5

Q ss_pred             HHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhcCccccc----ccCeeEEEEcCCCCCHHHHHHHHHHHhCCCCC--
Q 045087           52 EELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKH----YFDCHAWVQEPYTCYADQILDIIIKFLMPSSR--  125 (157)
Q Consensus        52 ~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~~~~~~~~~~~l~~i~~~l~~~~~--  125 (157)
                      ..|-.+|..+-....++.|+|.+|+|||+||..++.......    .-..++|++....++...+... +..++.+..  
T Consensus       109 ~~LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~~-~~~~g~~~~~~  187 (343)
T 1v5w_A          109 QEFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDI-ADRFNVDHDAV  187 (343)
T ss_dssp             HHHHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHHH-HHHTTCCHHHH
T ss_pred             hhHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHH-HHHcCCCHHHH
Confidence            334444433334567999999999999999988876321211    1246789998887777765543 344433210  


Q ss_pred             -----Ccc-cccccHHHHHHHHHHHhc---CCcEEEEeeCC
Q 045087          126 -----LSE-IKDKNYEMKKIILHEYLM---TKRYLIVIDDV  157 (157)
Q Consensus       126 -----~~~-~~~~~~~~~~~~l~~~L~---~kr~LlVlDdV  157 (157)
                           ... .......+++..+.+.+.   .+.-|||+|.+
T Consensus       188 l~~l~~~~~~~~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl  228 (343)
T 1v5w_A          188 LDNVLYARAYTSEHQMELLDYVAAKFHEEAGIFKLLIIDSI  228 (343)
T ss_dssp             HHTEEEEECCSTTHHHHHHHHHHHHHHHSCSSEEEEEEETS
T ss_pred             HhceeEeecCCHHHHHHHHHHHHHHHHhcCCCccEEEEech
Confidence                 000 111222344555556554   45679999975

>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*

Probab=98.12  E-value=4e-06  Score=64.23  Aligned_cols=68  Identities=12%  Similarity=0.078  Sum_probs=44.8

Q ss_pred             CceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEc--CCCCCHHHHHHHHHHHhCCCCCCcccccccHHHHHHHH
Q 045087           64 QLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQE--PYTCYADQILDIIIKFLMPSSRLSEIKDKNYEMKKIIL  141 (157)
Q Consensus        64 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~--~~~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~l  141 (157)
                      ..+++.|+|++|+|||+||.++...     .-..+.|++.  ....+.                    -..+.++.+..+
T Consensus       122 ~gsviLI~GpPGsGKTtLAlqlA~~-----~G~~VlyIs~~~eE~v~~--------------------~~~~le~~l~~i  176 (331)
T 2vhj_A          122 ASGMVIVTGKGNSGKTPLVHALGEA-----LGGKDKYATVRFGEPLSG--------------------YNTDFNVFVDDI  176 (331)
T ss_dssp             ESEEEEEECSCSSSHHHHHHHHHHH-----HHTTSCCEEEEBSCSSTT--------------------CBCCHHHHHHHH
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHh-----CCCCEEEEEecchhhhhh--------------------hhcCHHHHHHHH
Confidence            3457789999999999999998872     1223456665  322110                    013456666667


Q ss_pred             HHHhcCCcEEEEeeCC
Q 045087          142 HEYLMTKRYLIVIDDV  157 (157)
Q Consensus       142 ~~~L~~kr~LlVlDdV  157 (157)
                      .+.+...+ |||+|++
T Consensus       177 ~~~l~~~~-LLVIDsI  191 (331)
T 2vhj_A          177 ARAMLQHR-VIVIDSL  191 (331)
T ss_dssp             HHHHHHCS-EEEEECC
T ss_pred             HHHHhhCC-EEEEecc
Confidence            77776666 9999986

>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...

Probab=98.08  E-value=2.1e-05  Score=60.88  Aligned_cols=99  Identities=19%  Similarity=0.051  Sum_probs=60.3

Q ss_pred             HHHHHHHh-cCCCCceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCCCCCHHHHHHHHHHHhCCCCCC-ccc
Q 045087           52 EELLDLLI-EGPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPYTCYADQILDIIIKFLMPSSRL-SEI  129 (157)
Q Consensus        52 ~~l~~~L~-~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~l~~i~~~l~~~~~~-~~~  129 (157)
                      ..|-.+|. .+-....++.|+|.+|+||||||..+..  .....=..++|++....++..     .+..++..... .-.
T Consensus        47 ~~LD~~Lg~GGl~~G~iv~I~G~pGsGKTtLal~la~--~~~~~g~~vlyi~~E~~~~~~-----~a~~lG~~~~~l~i~  119 (349)
T 2zr9_A           47 ISLDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVA--NAQAAGGIAAFIDAEHALDPE-----YAKKLGVDTDSLLVS  119 (349)
T ss_dssp             HHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHH--HHHHTTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEE
T ss_pred             HHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHH--HHHhCCCeEEEEECCCCcCHH-----HHHHcCCCHHHeEEe
Confidence            44545554 3334567999999999999999988876  333222457889887766643     23444432110 001


Q ss_pred             ccccHHHHHHHHHHHhc-CCcEEEEeeCC
Q 045087          130 KDKNYEMKKIILHEYLM-TKRYLIVIDDV  157 (157)
Q Consensus       130 ~~~~~~~~~~~l~~~L~-~kr~LlVlDdV  157 (157)
                      ...+.++....+....+ .+.-+||+|.+
T Consensus       120 ~~~~~e~~l~~~~~l~~~~~~~lIVIDsl  148 (349)
T 2zr9_A          120 QPDTGEQALEIADMLVRSGALDIIVIDSV  148 (349)
T ss_dssp             CCSSHHHHHHHHHHHHTTTCCSEEEEECG
T ss_pred             cCCCHHHHHHHHHHHHhcCCCCEEEEcCh
Confidence            22345666666666554 34569999974

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=98.08  E-value=8.4e-06  Score=58.60  Aligned_cols=61  Identities=8%  Similarity=0.022  Sum_probs=40.8

Q ss_pred             CCCCcccc---HHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcC
Q 045087           40 KSRDTVGL---DDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEP  104 (157)
Q Consensus        40 ~~~~~vGr---~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~  104 (157)
                      ..++|+|.   +..++.|..++...  ....+.|+|.+|+||||||+.+++  ..........|++..
T Consensus        26 ~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~ll~G~~G~GKT~la~~l~~--~~~~~~~~~~~~~~~   89 (242)
T 3bos_A           26 TFTSYYPAAGNDELIGALKSAASGD--GVQAIYLWGPVKSGRTHLIHAACA--RANELERRSFYIPLG   89 (242)
T ss_dssp             STTTSCC--CCHHHHHHHHHHHHTC--SCSEEEEECSTTSSHHHHHHHHHH--HHHHTTCCEEEEEGG
T ss_pred             ChhhccCCCCCHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHH--HHHHcCCeEEEEEHH
Confidence            34567763   45666776666553  356889999999999999999987  443333344555543

>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1

Probab=98.07  E-value=2.5e-05  Score=60.82  Aligned_cols=100  Identities=17%  Similarity=0.043  Sum_probs=61.9

Q ss_pred             HHHHHHHHh-cCCCCceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCCCCCHHHHHHHHHHHhCCCCC-Ccc
Q 045087           51 MEELLDLLI-EGPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPYTCYADQILDIIIKFLMPSSR-LSE  128 (157)
Q Consensus        51 ~~~l~~~L~-~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~l~~i~~~l~~~~~-~~~  128 (157)
                      ...|-.+|. .+-....++.|+|.+|+||||||..+..  .....-..++|++....++..     .+..++.+.. ..-
T Consensus        59 ~~~LD~~Lg~GGl~~G~li~I~G~pGsGKTtlal~la~--~~~~~g~~vlyi~~E~s~~~~-----~a~~~g~d~~~l~i  131 (366)
T 1xp8_A           59 SLSLDLALGVGGIPRGRITEIYGPESGGKTTLALAIVA--QAQKAGGTCAFIDAEHALDPV-----YARALGVNTDELLV  131 (366)
T ss_dssp             CHHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHH--HHHHTTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEE
T ss_pred             CHHHHHHhCCCCccCCcEEEEEcCCCCChHHHHHHHHH--HHHHCCCeEEEEECCCChhHH-----HHHHcCCCHHHcee
Confidence            345555554 2334456899999999999999988876  332223467899988776643     2344443211 000


Q ss_pred             cccccHHHHHHHHHHHhcC-CcEEEEeeCC
Q 045087          129 IKDKNYEMKKIILHEYLMT-KRYLIVIDDV  157 (157)
Q Consensus       129 ~~~~~~~~~~~~l~~~L~~-kr~LlVlDdV  157 (157)
                      ....+.+++...+...++. ..-+||+|.+
T Consensus       132 ~~~~~~e~~l~~l~~l~~~~~~~lVVIDsl  161 (366)
T 1xp8_A          132 SQPDNGEQALEIMELLVRSGAIDVVVVDSV  161 (366)
T ss_dssp             ECCSSHHHHHHHHHHHHTTTCCSEEEEECT
T ss_pred             ecCCcHHHHHHHHHHHHhcCCCCEEEEeCh
Confidence            1234567777777776653 4469999975

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=98.07  E-value=3.2e-06  Score=63.58  Aligned_cols=62  Identities=15%  Similarity=0.210  Sum_probs=42.9

Q ss_pred             CCccccHHHHHHHHHHHhcC-------CCCceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCC
Q 045087           42 RDTVGLDDRMEELLDLLIEG-------PPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPY  105 (157)
Q Consensus        42 ~~~vGr~~~~~~l~~~L~~~-------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~  105 (157)
                      ..++|.+..++.|...+...       ......+.++|.+|+|||++|+.+++  .....-...+.+.++.
T Consensus        17 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~--~~~~~~~~~~~~~~~~   85 (311)
T 4fcw_A           17 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAA--TLFDTEEAMIRIDMTE   85 (311)
T ss_dssp             TTCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHH--HHHSCGGGEEEEEGGG
T ss_pred             hhcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHH--HHcCCCcceEEeeccc
Confidence            35789999988888877542       11235799999999999999999988  3332222334555443

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=98.06  E-value=3e-05  Score=56.03  Aligned_cols=104  Identities=13%  Similarity=0.095  Sum_probs=57.8

Q ss_pred             HHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhcCccccc----ccCeeEEEEcCCCCCHHHHHHHHHHHhCCCC----
Q 045087           53 ELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKH----YFDCHAWVQEPYTCYADQILDIIIKFLMPSS----  124 (157)
Q Consensus        53 ~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~~~~~~~~~~~l~~i~~~l~~~~----  124 (157)
                      .|-++|..+-....++.|+|.+|+|||||+..+........    .-...+|++....+....+. .++..++...    
T Consensus        12 ~LD~~l~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~-~~~~~~g~~~~~~~   90 (243)
T 1n0w_A           12 ELDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLL-AVAERYGLSGSDVL   90 (243)
T ss_dssp             HHHHHTTTSEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHH
T ss_pred             HHHHhhcCCCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHH-HHHHHcCCCHHHHh
Confidence            34444433323456999999999999999998876211111    12467888877765655443 3344443221    


Q ss_pred             -CCcccccccHH---HHHHHHHHHhc-CCcEEEEeeCC
Q 045087          125 -RLSEIKDKNYE---MKKIILHEYLM-TKRYLIVIDDV  157 (157)
Q Consensus       125 -~~~~~~~~~~~---~~~~~l~~~L~-~kr~LlVlDdV  157 (157)
                       ...-....+..   +....+.+.+. .+.-+||||++
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiD~~  128 (243)
T 1n0w_A           91 DNVAYARAFNTDHQTQLLYQASAMMVESRYALLIVDSA  128 (243)
T ss_dssp             HTEEEEECCSHHHHHHHHHHHHHHHHHSCEEEEEEETS
T ss_pred             hCeEEEecCCHHHHHHHHHHHHHHHhcCCceEEEEeCc
Confidence             00001112222   23444555554 46789999974

>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}

Probab=98.04  E-value=4.9e-05  Score=58.12  Aligned_cols=98  Identities=8%  Similarity=0.021  Sum_probs=60.2

Q ss_pred             HHHHHHHh----cCCCCceEEEEEeCCCCcHHHHHHHHhcCcccccc--cCeeEEEEcCCCCCHHHHHHHHHHHhCCCCC
Q 045087           52 EELLDLLI----EGPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHY--FDCHAWVQEPYTCYADQILDIIIKFLMPSSR  125 (157)
Q Consensus        52 ~~l~~~L~----~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~--F~~~~wv~~~~~~~~~~~l~~i~~~l~~~~~  125 (157)
                      ..|-..|-    .+-... ++.|+|.+|+||||||.++..  .....  =..++|++....++..     .++.++.+.+
T Consensus        12 ~~LD~~LGg~~~GGl~~G-iteI~G~pGsGKTtL~Lq~~~--~~~~~g~g~~vlyId~E~s~~~~-----ra~~lGvd~d   83 (333)
T 3io5_A           12 PMMNIALSGEITGGMQSG-LLILAGPSKSFKSNFGLTMVS--SYMRQYPDAVCLFYDSEFGITPA-----YLRSMGVDPE   83 (333)
T ss_dssp             HHHHHHHHSSTTCCBCSE-EEEEEESSSSSHHHHHHHHHH--HHHHHCTTCEEEEEESSCCCCHH-----HHHHTTCCGG
T ss_pred             HHHHHHhCCCCCCCCcCC-eEEEECCCCCCHHHHHHHHHH--HHHhcCCCceEEEEeccchhhHH-----HHHHhCCCHH
Confidence            44555555    333333 789999999999999987766  33333  2467899988877754     2566665322


Q ss_pred             C-cccccccHHHH-HHHHHHH--h-cCCcEEEEeeCC
Q 045087          126 L-SEIKDKNYEMK-KIILHEY--L-MTKRYLIVIDDV  157 (157)
Q Consensus       126 ~-~~~~~~~~~~~-~~~l~~~--L-~~kr~LlVlDdV  157 (157)
                      . --....+.++. +..+...  + +++.-|||+|.|
T Consensus        84 ~llv~~~~~~E~~~l~i~~~l~~i~~~~~~lvVIDSI  120 (333)
T 3io5_A           84 RVIHTPVQSLEQLRIDMVNQLDAIERGEKVVVFIDSL  120 (333)
T ss_dssp             GEEEEECSBHHHHHHHHHHHHHTCCTTCCEEEEEECS
T ss_pred             HeEEEcCCCHHHHHHHHHHHHHHhhccCceEEEEecc
Confidence            1 00223455665 5444333  3 456789999975

>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.04  E-value=9.2e-06  Score=64.37  Aligned_cols=52  Identities=21%  Similarity=0.270  Sum_probs=39.9

Q ss_pred             CCccccHHHHHHHHHHHhc-----------CCCCceEEEEEeCCCCcHHHHHHHHhcCccccccc
Q 045087           42 RDTVGLDDRMEELLDLLIE-----------GPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYF   95 (157)
Q Consensus        42 ~~~vGr~~~~~~l~~~L~~-----------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F   95 (157)
                      +++.|.++..++|.+.+..           +-...+-+.++|++|+|||.||+++++  +....|
T Consensus       182 ~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~--e~~~~f  244 (437)
T 4b4t_I          182 SDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVAN--QTSATF  244 (437)
T ss_dssp             GGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHH--HHTCEE
T ss_pred             eecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHH--HhCCCE
Confidence            5688999999998877632           113356788999999999999999998  444443

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=98.03  E-value=1.1e-05  Score=61.71  Aligned_cols=45  Identities=16%  Similarity=0.208  Sum_probs=37.8

Q ss_pred             CCCccccHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087           41 SRDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        41 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      -..++|.+..++.|...+..+.  .+.+.++|++|+||||+|+.+.+
T Consensus        24 ~~~~~g~~~~~~~L~~~i~~g~--~~~~ll~Gp~G~GKTtla~~la~   68 (340)
T 1sxj_C           24 LDEVYGQNEVITTVRKFVDEGK--LPHLLFYGPPGTGKTSTIVALAR   68 (340)
T ss_dssp             GGGCCSCHHHHHHHHHHHHTTC--CCCEEEECSSSSSHHHHHHHHHH
T ss_pred             HHHhcCcHHHHHHHHHHHhcCC--CceEEEECCCCCCHHHHHHHHHH
Confidence            3568899999999988887764  33388999999999999999987

>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*

Probab=98.03  E-value=2.2e-05  Score=59.75  Aligned_cols=105  Identities=14%  Similarity=0.116  Sum_probs=62.6

Q ss_pred             HHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhcCccccc---------cc-----CeeEEEEcCCCCCHHHHHHHHH
Q 045087           52 EELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKH---------YF-----DCHAWVQEPYTCYADQILDIII  117 (157)
Q Consensus        52 ~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~---------~F-----~~~~wv~~~~~~~~~~~l~~i~  117 (157)
                      ..|-.+|..+-....++.|+|.+|+|||+||..++.......         ..     ..++|++....++..++... +
T Consensus        85 ~~LD~~l~GGl~~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~~-~  163 (322)
T 2i1q_A           85 SELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQM-A  163 (322)
T ss_dssp             HHHHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHHH-H
T ss_pred             hhHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHHH-H
Confidence            445444433334567999999999999999988875321211         11     46789998888777766644 4


Q ss_pred             HHhCCCCC-----CcccccccHH---HHHHHHHHHhcC--CcEEEEeeCC
Q 045087          118 KFLMPSSR-----LSEIKDKNYE---MKKIILHEYLMT--KRYLIVIDDV  157 (157)
Q Consensus       118 ~~l~~~~~-----~~~~~~~~~~---~~~~~l~~~L~~--kr~LlVlDdV  157 (157)
                      ..++.+..     ..-....+.+   +++..+.+.+..  +.-|||+|.+
T Consensus       164 ~~~g~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl  213 (322)
T 2i1q_A          164 EHAGIDGQTVLDNTFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSL  213 (322)
T ss_dssp             HHHTCCHHHHHHTEEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECS
T ss_pred             HHcCCCHHHHhcCEEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECc
Confidence            45543210     0001112223   455566666654  4569999975

>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}

Probab=98.03  E-value=1.5e-06  Score=58.69  Aligned_cols=47  Identities=15%  Similarity=0.087  Sum_probs=33.8

Q ss_pred             CCccccHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhcC
Q 045087           42 RDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSS   88 (157)
Q Consensus        42 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~   88 (157)
                      -.++|++..++++.+.+..-......+.|+|.+|+|||++|+.+++.
T Consensus         4 ~~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~   50 (143)
T 3co5_A            4 FDKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKN   50 (143)
T ss_dssp             ----CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCT
T ss_pred             cCceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHh
Confidence            46789999999988887531112345789999999999999999883

>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*

Probab=98.01  E-value=3e-05  Score=65.99  Aligned_cols=52  Identities=12%  Similarity=0.131  Sum_probs=39.5

Q ss_pred             CCCccccHHHHHHHHHHHhc----C-------CCCceEEEEEeCCCCcHHHHHHHHhcCcccccc
Q 045087           41 SRDTVGLDDRMEELLDLLIE----G-------PPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHY   94 (157)
Q Consensus        41 ~~~~vGr~~~~~~l~~~L~~----~-------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~   94 (157)
                      .+++.|.++.+++|.+++..    .       -...+-|.++|++|+|||+||+++++  +...+
T Consensus       203 ~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~--elg~~  265 (806)
T 3cf2_A          203 YDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN--ETGAF  265 (806)
T ss_dssp             GGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHT--TTTCE
T ss_pred             hhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHH--HhCCe
Confidence            35688999999888877631    1       12356789999999999999999999  44433

>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}

Probab=97.99  E-value=9.5e-06  Score=61.65  Aligned_cols=54  Identities=11%  Similarity=0.169  Sum_probs=34.5

Q ss_pred             HHHHHHHHHHHhcCC-CCceEEEEEeCCCCcHHHHHHHHhcCcccc-cccCeeEEEEc
Q 045087           48 DDRMEELLDLLIEGP-PQLSAVTILDSIGLDKTAFAAEAYSSNYMK-HYFDCHAWVQE  103 (157)
Q Consensus        48 ~~~~~~l~~~L~~~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~F~~~~wv~~  103 (157)
                      ...++.+.+++.... .....+.++|.+|+|||+||.++++  ... ..-....++++
T Consensus       134 ~~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~--~~~~~~g~~v~~~~~  189 (308)
T 2qgz_A          134 MEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAH--ELSEKKGVSTTLLHF  189 (308)
T ss_dssp             HHHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHH--HHHHHSCCCEEEEEH
T ss_pred             HHHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHH--HHHHhcCCcEEEEEH
Confidence            334455556665422 1246788999999999999999988  443 33223445543

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=97.98  E-value=6.8e-05  Score=55.94  Aligned_cols=47  Identities=23%  Similarity=0.200  Sum_probs=32.9

Q ss_pred             CCCCccccHHHHHHHHHHHhc---C---------CCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087           40 KSRDTVGLDDRMEELLDLLIE---G---------PPQLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        40 ~~~~~vGr~~~~~~l~~~L~~---~---------~~~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ...++.|.++..++|.+.+..   .         ..... +.++|++|+||||||+.++.
T Consensus         8 ~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~G-vlL~Gp~GtGKTtLakala~   66 (274)
T 2x8a_A            8 TWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAG-VLLAGPPGCGKTLLAKAVAN   66 (274)
T ss_dssp             ----CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSE-EEEESSTTSCHHHHHHHHHH
T ss_pred             CHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCe-EEEECCCCCcHHHHHHHHHH
Confidence            346788888888888775421   0         11222 89999999999999999988

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=97.98  E-value=7.2e-06  Score=61.80  Aligned_cols=24  Identities=13%  Similarity=0.048  Sum_probs=21.5

Q ss_pred             CceEEEEEeCCCCcHHHHHHHHhc
Q 045087           64 QLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        64 ~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ....+.++|++|+|||+||+.+++
T Consensus        35 ~p~~lLl~GppGtGKT~la~aiA~   58 (293)
T 3t15_A           35 VPLILGIWGGKGQGKSFQCELVFR   58 (293)
T ss_dssp             CCSEEEEEECTTSCHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            346788999999999999999998

>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}

Probab=97.96  E-value=7.3e-06  Score=65.71  Aligned_cols=45  Identities=16%  Similarity=0.277  Sum_probs=38.3

Q ss_pred             CCCccccHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087           41 SRDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        41 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ...++|++.+++.+...|....  ...+.++|.+|+|||++|+.+++
T Consensus       179 ld~iiGr~~~i~~l~~~l~r~~--~~~~LL~G~pG~GKT~la~~la~  223 (468)
T 3pxg_A          179 LDPVIGRSKEIQRVIEVLSRRT--KNNPVLIGEPGVGKTAIAEGLAQ  223 (468)
T ss_dssp             SCCCCCCHHHHHHHHHHHHCSS--SCEEEEESCTTTTTHHHHHHHHH
T ss_pred             CCCccCcHHHHHHHHHHHhccC--CCCeEEECCCCCCHHHHHHHHHH
Confidence            3569999999999999987643  34567999999999999999987

>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*

Probab=97.94  E-value=1e-05  Score=59.65  Aligned_cols=47  Identities=19%  Similarity=0.197  Sum_probs=33.9

Q ss_pred             CCccccHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhcC
Q 045087           42 RDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSS   88 (157)
Q Consensus        42 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~   88 (157)
                      ..++|....+.++.+.+..-......+.|+|.+|+|||++|+.+++.
T Consensus         6 ~~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~   52 (265)
T 2bjv_A            6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYL   52 (265)
T ss_dssp             ----CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHT
T ss_pred             ccceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHh
Confidence            46899999998888776532122356789999999999999999883

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=97.93  E-value=7.8e-06  Score=55.67  Aligned_cols=40  Identities=8%  Similarity=-0.017  Sum_probs=27.6

Q ss_pred             CceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCC
Q 045087           64 QLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPY  105 (157)
Q Consensus        64 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~  105 (157)
                      ....+.|+|..|+|||||++.++.  .....-...+++....
T Consensus        35 ~g~~~~l~G~~G~GKTtL~~~i~~--~~~~~g~~~~~~~~~~   74 (149)
T 2kjq_A           35 HGQFIYVWGEEGAGKSHLLQAWVA--QALEAGKNAAYIDAAS   74 (149)
T ss_dssp             CCSEEEEESSSTTTTCHHHHHHHH--HHHTTTCCEEEEETTT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHH--HHHhcCCcEEEEcHHH
Confidence            346899999999999999999988  3322111245665443

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=97.93  E-value=9.8e-06  Score=61.82  Aligned_cols=46  Identities=15%  Similarity=0.109  Sum_probs=38.9

Q ss_pred             CCCCccccHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087           40 KSRDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        40 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ....++|++..++.|..++..+.  .+.+.++|.+|+||||+|+.+.+
T Consensus        35 ~~~~i~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~la~~la~   80 (353)
T 1sxj_D           35 NLDEVTAQDHAVTVLKKTLKSAN--LPHMLFYGPPGTGKTSTILALTK   80 (353)
T ss_dssp             STTTCCSCCTTHHHHHHHTTCTT--CCCEEEECSTTSSHHHHHHHHHH
T ss_pred             CHHHhhCCHHHHHHHHHHHhcCC--CCEEEEECCCCCCHHHHHHHHHH
Confidence            34679999999999999987653  23388999999999999999988

>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}

Probab=97.90  E-value=6.4e-05  Score=60.78  Aligned_cols=49  Identities=20%  Similarity=0.265  Sum_probs=36.7

Q ss_pred             CCCCCccccHHHHHHHHHHHhc--C--------CCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087           39 SKSRDTVGLDDRMEELLDLLIE--G--------PPQLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        39 ~~~~~~vGr~~~~~~l~~~L~~--~--------~~~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ....+++|.++.+++|.++...  .        ..-.+-+.|+|.+|+|||+||+.++.
T Consensus        28 ~~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~   86 (499)
T 2dhr_A           28 VTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAG   86 (499)
T ss_dssp             CCTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHH
T ss_pred             CCHHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHH
Confidence            3456799999988888776532  1        01123389999999999999999988

>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A

Probab=97.90  E-value=5.4e-05  Score=58.71  Aligned_cols=100  Identities=17%  Similarity=0.001  Sum_probs=59.7

Q ss_pred             HHHHHHHHh-cCCCCceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCCCCCHHHHHHHHHHHhCCCCC-Ccc
Q 045087           51 MEELLDLLI-EGPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPYTCYADQILDIIIKFLMPSSR-LSE  128 (157)
Q Consensus        51 ~~~l~~~L~-~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~l~~i~~~l~~~~~-~~~  128 (157)
                      ...|-.+|. .+-....++.|+|.+|+||||||..+..  .....-..++|++....++...     +..++...+ ..-
T Consensus        48 ~~~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~--~~~~~g~~vlyid~E~s~~~~~-----a~~~g~~~~~l~i  120 (356)
T 1u94_A           48 SLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIA--AAQREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLC  120 (356)
T ss_dssp             CHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHH--HHHHTTCCEEEEESSCCCCHHH-----HHHTTCCGGGCEE
T ss_pred             CHHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHH--HHHHCCCeEEEEeCCCCccHHH-----HHHcCCChhheee
Confidence            345545554 3334556999999999999999988876  3332234678999877766432     344443211 000


Q ss_pred             cccccHHHHHHHHHHHhc-CCcEEEEeeCC
Q 045087          129 IKDKNYEMKKIILHEYLM-TKRYLIVIDDV  157 (157)
Q Consensus       129 ~~~~~~~~~~~~l~~~L~-~kr~LlVlDdV  157 (157)
                      ....+.+++.+.+....+ .+.-+||+|.+
T Consensus       121 ~~~~~~e~~~~~~~~l~~~~~~~lVVIDsl  150 (356)
T 1u94_A          121 SQPDTGEQALEICDALARSGAVDVIVVDSV  150 (356)
T ss_dssp             ECCSSHHHHHHHHHHHHHHTCCSEEEEECG
T ss_pred             eCCCCHHHHHHHHHHHHhccCCCEEEEcCH
Confidence            122345666666655543 44569999974

>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}

Probab=97.88  E-value=4e-05  Score=58.26  Aligned_cols=42  Identities=21%  Similarity=0.179  Sum_probs=36.3

Q ss_pred             CCccccHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087           42 RDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        42 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ..++|++..++.+...+..+    ..+.++|.+|+|||+||+.+.+
T Consensus        27 ~~i~g~~~~~~~l~~~l~~~----~~vll~G~pGtGKT~la~~la~   68 (331)
T 2r44_A           27 KVVVGQKYMINRLLIGICTG----GHILLEGVPGLAKTLSVNTLAK   68 (331)
T ss_dssp             TTCCSCHHHHHHHHHHHHHT----CCEEEESCCCHHHHHHHHHHHH
T ss_pred             cceeCcHHHHHHHHHHHHcC----CeEEEECCCCCcHHHHHHHHHH
Confidence            57899999999988887764    2688999999999999999977

>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*

Probab=97.85  E-value=8.4e-06  Score=61.02  Aligned_cols=46  Identities=15%  Similarity=0.185  Sum_probs=36.8

Q ss_pred             CCccccHHHHHHHHHHHhc------------CCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087           42 RDTVGLDDRMEELLDLLIE------------GPPQLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        42 ~~~vGr~~~~~~l~~~L~~------------~~~~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      +.++|.+..++.|...+..            .......+.++|.+|+|||++|+.+++
T Consensus        15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~   72 (310)
T 1ofh_A           15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAK   72 (310)
T ss_dssp             TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred             hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999887754            012245678999999999999999987

>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}

Probab=97.81  E-value=0.00015  Score=55.09  Aligned_cols=64  Identities=19%  Similarity=0.060  Sum_probs=41.9

Q ss_pred             HHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCCCCCHHHHHHHHHHH
Q 045087           51 MEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPYTCYADQILDIIIKF  119 (157)
Q Consensus        51 ~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~l~~i~~~  119 (157)
                      ...|-+++ .+-....++.|.|.+|+||||+|..++.+...+ . ..++|++..  .+..++...++..
T Consensus        55 ~~~LD~~l-gGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~-g-~~vl~~slE--~s~~~l~~R~~~~  118 (315)
T 3bh0_A           55 FTELDRMT-YGYKRRNFVLIAARPSMGKTAFALKQAKNMSDN-D-DVVNLHSLE--MGKKENIKRLIVT  118 (315)
T ss_dssp             CHHHHHHH-SSBCTTCEEEEECCTTSSHHHHHHHHHHHHHTT-T-CEEEEEESS--SCHHHHHHHHHHH
T ss_pred             hHHHHhhc-CCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHc-C-CeEEEEECC--CCHHHHHHHHHHH
Confidence            34455545 443456689999999999999998887532222 2 567788765  3556666665543

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=97.79  E-value=1.5e-05  Score=61.05  Aligned_cols=48  Identities=23%  Similarity=0.193  Sum_probs=37.4

Q ss_pred             CCCCccccHHHHHHHHHHHhcC---CCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087           40 KSRDTVGLDDRMEELLDLLIEG---PPQLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        40 ~~~~~vGr~~~~~~l~~~L~~~---~~~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      .-+.++|.+..++.|...+..+   ......+.++|++|+||||||+.++.
T Consensus        23 ~l~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~   73 (334)
T 1in4_A           23 SLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIAS   73 (334)
T ss_dssp             SGGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHH
T ss_pred             cHHHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHH
Confidence            3456889988888887766532   22345789999999999999999987

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*

Probab=97.78  E-value=1.1e-05  Score=59.42  Aligned_cols=48  Identities=21%  Similarity=0.305  Sum_probs=36.2

Q ss_pred             CCCCccccHHHHHHHHHHHhc----------CCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087           40 KSRDTVGLDDRMEELLDLLIE----------GPPQLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        40 ~~~~~vGr~~~~~~l~~~L~~----------~~~~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ...+++|.+..+++|.+.+..          +.....-+.++|.+|+|||+||+.+++
T Consensus         9 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~   66 (268)
T 2r62_A            9 RFKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAG   66 (268)
T ss_dssp             CSTTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHH
T ss_pred             CHHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHH
Confidence            346799999888888876641          111123477999999999999999988

>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}

Probab=97.76  E-value=2.6e-05  Score=59.05  Aligned_cols=46  Identities=22%  Similarity=0.238  Sum_probs=36.8

Q ss_pred             CCccccHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087           42 RDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        42 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      +.++|....+.++.+.+..-......+.|+|.+|+|||++|+.+++
T Consensus         2 ~~iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~   47 (304)
T 1ojl_A            2 SHMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHA   47 (304)
T ss_dssp             -CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHH
T ss_pred             CCcEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHH
Confidence            4689999999999888754222344678999999999999999987

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=97.76  E-value=0.00019  Score=51.20  Aligned_cols=48  Identities=13%  Similarity=0.161  Sum_probs=31.6

Q ss_pred             CCceEEEEEeCCCCcHHHHHHHHhcCccccc----ccCeeEEEEcCCCCCHH
Q 045087           63 PQLSAVTILDSIGLDKTAFAAEAYSSNYMKH----YFDCHAWVQEPYTCYAD  110 (157)
Q Consensus        63 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~~~~~~~~~  110 (157)
                      ....+++|+|.+|+|||||++.++.......    .-...+|+.-...+...
T Consensus        23 ~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~~   74 (231)
T 4a74_A           23 ETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPE   74 (231)
T ss_dssp             ESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCHH
Confidence            3457999999999999999999865211110    12346777765544443

>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}

Probab=97.75  E-value=2.4e-05  Score=66.07  Aligned_cols=45  Identities=16%  Similarity=0.277  Sum_probs=38.5

Q ss_pred             CCCccccHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087           41 SRDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        41 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ...++|++.+++++...|....  ..-+.++|.+|+|||++|+.+++
T Consensus       179 ld~iiG~~~~i~~l~~~l~~~~--~~~vLL~G~pGtGKT~la~~la~  223 (758)
T 3pxi_A          179 LDPVIGRSKEIQRVIEVLSRRT--KNNPVLIGEPGVGKTAIAEGLAQ  223 (758)
T ss_dssp             SCCCCCCHHHHHHHHHHHHCSS--SCEEEEESCTTTTTHHHHHHHHH
T ss_pred             CCCccCchHHHHHHHHHHhCCC--CCCeEEECCCCCCHHHHHHHHHH
Confidence            3579999999999999997643  33578999999999999999987

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=97.75  E-value=0.00012  Score=56.61  Aligned_cols=104  Identities=13%  Similarity=0.134  Sum_probs=57.5

Q ss_pred             HHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhcCccccccc---C-eeEEEEcCCCCCHHHHHHHHHHHhCCCCC---
Q 045087           53 ELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYF---D-CHAWVQEPYTCYADQILDIIIKFLMPSSR---  125 (157)
Q Consensus        53 ~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F---~-~~~wv~~~~~~~~~~~l~~i~~~l~~~~~---  125 (157)
                      .|-.+|..+-....++.|+|.+|+|||||+..++.........   . .++|++....+....+ ..++........   
T Consensus       119 ~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i-~~i~q~~~~~~~~v~  197 (349)
T 1pzn_A          119 SLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERI-REIAQNRGLDPDEVL  197 (349)
T ss_dssp             HHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHH-HHHHHTTTCCHHHHG
T ss_pred             HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHHH-HHHHHHcCCCHHHHh
Confidence            3434443333456799999999999999999887732111111   2 3488887665544433 334433322110   


Q ss_pred             ----Ccc-cccccHHHHHHHHHHHhc------CCcEEEEeeCC
Q 045087          126 ----LSE-IKDKNYEMKKIILHEYLM------TKRYLIVIDDV  157 (157)
Q Consensus       126 ----~~~-~~~~~~~~~~~~l~~~L~------~kr~LlVlDdV  157 (157)
                          ... .......+++..+...+.      .+.-|||||.+
T Consensus       198 ~ni~~~~~~~~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~  240 (349)
T 1pzn_A          198 KHIYVARAFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSL  240 (349)
T ss_dssp             GGEEEEECCSHHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETS
T ss_pred             hCEEEEecCChHHHHHHHHHHHHHHHHhccccCCCCEEEEeCc
Confidence                000 111223455566666664      46789999974

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=97.75  E-value=2.3e-05  Score=59.98  Aligned_cols=45  Identities=11%  Similarity=0.006  Sum_probs=36.6

Q ss_pred             CCCccccHHHHHHHHHHH-hcCCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087           41 SRDTVGLDDRMEELLDLL-IEGPPQLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        41 ~~~~vGr~~~~~~l~~~L-~~~~~~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ..+++|.+..++.|.+++ ..+.  .+.+.|+|++|+||||+|+.++.
T Consensus        13 ~~~~vg~~~~~~~l~~~~~~~~~--~~~~ll~Gp~G~GKTtl~~~la~   58 (354)
T 1sxj_E           13 LNALSHNEELTNFLKSLSDQPRD--LPHLLLYGPNGTGKKTRCMALLE   58 (354)
T ss_dssp             GGGCCSCHHHHHHHHTTTTCTTC--CCCEEEECSTTSSHHHHHHTHHH
T ss_pred             HHHhcCCHHHHHHHHHHHhhCCC--CCeEEEECCCCCCHHHHHHHHHH
Confidence            356899999999999888 4433  23389999999999999998866

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=97.73  E-value=0.00042  Score=52.18  Aligned_cols=27  Identities=15%  Similarity=0.114  Sum_probs=23.3

Q ss_pred             CCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087           61 GPPQLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        61 ~~~~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ......+|+|+|.+|+||||||+.+..
T Consensus        27 ~~~~~~ii~I~G~sGsGKSTla~~L~~   53 (290)
T 1odf_A           27 GNKCPLFIFFSGPQGSGKSFTSIQIYN   53 (290)
T ss_dssp             TCCSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             cCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence            345678999999999999999998876

>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A

Probab=97.71  E-value=3.5e-05  Score=59.51  Aligned_cols=45  Identities=16%  Similarity=0.113  Sum_probs=35.1

Q ss_pred             CccccHHHHHHHHHHHh-------------cCCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087           43 DTVGLDDRMEELLDLLI-------------EGPPQLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        43 ~~vGr~~~~~~l~~~L~-------------~~~~~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      .++|.+..++.|...+.             ........+.++|++|+|||++|+.+++
T Consensus        16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~   73 (363)
T 3hws_A           16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLAR   73 (363)
T ss_dssp             HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred             hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHH
Confidence            46898888888887773             1111345788999999999999999987

>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20

Probab=97.69  E-value=0.00024  Score=53.87  Aligned_cols=40  Identities=15%  Similarity=0.066  Sum_probs=31.4

Q ss_pred             ccHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087           46 GLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        46 Gr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      |.++.++.|.+.+..+.  .+...++|++|+||||+|..+.+
T Consensus         1 g~~~~~~~L~~~i~~~~--~~~~Lf~Gp~G~GKtt~a~~la~   40 (305)
T 2gno_A            1 GAKDQLETLKRIIEKSE--GISILINGEDLSYPREVSLELPE   40 (305)
T ss_dssp             ---CHHHHHHHHHHTCS--SEEEEEECSSSSHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHCCC--CcEEEEECCCCCCHHHHHHHHHH
Confidence            45666778888887664  67888999999999999999876

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=97.67  E-value=0.00018  Score=51.34  Aligned_cols=49  Identities=18%  Similarity=0.047  Sum_probs=31.5

Q ss_pred             CceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCCCCCHHHHHHHH
Q 045087           64 QLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPYTCYADQILDII  116 (157)
Q Consensus        64 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~l~~i  116 (157)
                      ...++.|+|.+|+|||||+..++.  .....-....|++...  +..++...+
T Consensus        22 ~G~~~~i~G~~GsGKTtl~~~l~~--~~~~~~~~v~~~~~~~--~~~~~~~~~   70 (235)
T 2w0m_A           22 QGFFIALTGEPGTGKTIFSLHFIA--KGLRDGDPCIYVTTEE--SRDSIIRQA   70 (235)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHHH--HHHHHTCCEEEEESSS--CHHHHHHHH
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHHH--HHHHCCCeEEEEEccc--CHHHHHHHH
Confidence            346899999999999999999885  2222222455666443  344444443

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=97.67  E-value=7.7e-05  Score=52.87  Aligned_cols=41  Identities=20%  Similarity=0.128  Sum_probs=33.1

Q ss_pred             cHHHHHHHHHHHhcC-CCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087           47 LDDRMEELLDLLIEG-PPQLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        47 r~~~~~~l~~~L~~~-~~~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      |++.+++|.+.+... .....+++|+|.+|+||||+++.+..
T Consensus         3 ~~~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~   44 (201)
T 1rz3_A            3 LRDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQ   44 (201)
T ss_dssp             HHHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHH
Confidence            566778888887653 23567999999999999999998876

>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*

Probab=97.67  E-value=0.00031  Score=55.24  Aligned_cols=105  Identities=13%  Similarity=0.035  Sum_probs=57.0

Q ss_pred             HHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhcCccccc----ccCeeEEEEcCCCCCHHHHHHHHHHHhCCCCC--
Q 045087           52 EELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKH----YFDCHAWVQEPYTCYADQILDIIIKFLMPSSR--  125 (157)
Q Consensus        52 ~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~~~~~~~~~~~l~~i~~~l~~~~~--  125 (157)
                      ..|-++|..+-....++.|+|.+|+|||||+..++-......    .-...+|++....+....+. .++..++....  
T Consensus       165 ~~LD~lLgGGI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~-~~a~~~gl~~~~v  243 (400)
T 3lda_A          165 KNLDTLLGGGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLV-SIAQRFGLDPDDA  243 (400)
T ss_dssp             HHHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHH-HHHHHTTCCHHHH
T ss_pred             hhHHHHhcCCcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHH-HHHHHcCCChHhH
Confidence            445444433334456999999999999999996642111111    22457888877766655443 35555543210  


Q ss_pred             ---CcccccccH---HHHHHHHHHHh-cCCcEEEEeeCC
Q 045087          126 ---LSEIKDKNY---EMKKIILHEYL-MTKRYLIVIDDV  157 (157)
Q Consensus       126 ---~~~~~~~~~---~~~~~~l~~~L-~~kr~LlVlDdV  157 (157)
                         ..-....+.   .+.+..+...+ ..+.-|||+|.+
T Consensus       244 leni~~~~~~~~~~~~~~l~~~~~~l~~~~~~llVIDs~  282 (400)
T 3lda_A          244 LNNVAYARAYNADHQLRLLDAAAQMMSESRFSLIVVDSV  282 (400)
T ss_dssp             HHTEEEEECCSHHHHHHHHHHHHHHHHHSCEEEEEEETG
T ss_pred             hhcEEEeccCChHHHHHHHHHHHHHHHhcCCceEEecch
Confidence               000111122   23334444444 345679999974

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=97.65  E-value=5e-05  Score=54.11  Aligned_cols=38  Identities=16%  Similarity=0.170  Sum_probs=29.0

Q ss_pred             HHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087           50 RMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        50 ~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      -+++|.+.+........+++|+|.+|.|||||++.+..
T Consensus         7 ~~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~   44 (208)
T 3c8u_A            7 LCQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAA   44 (208)
T ss_dssp             HHHHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence            44555565544334567999999999999999998877

>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}

Probab=97.60  E-value=7.5e-05  Score=60.39  Aligned_cols=42  Identities=17%  Similarity=0.158  Sum_probs=36.6

Q ss_pred             CCccccHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087           42 RDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        42 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ..++|.+..++.+...+..+.    .+.++|.+|+|||+||+.+.+
T Consensus        22 ~~ivGq~~~i~~l~~al~~~~----~VLL~GpPGtGKT~LAraLa~   63 (500)
T 3nbx_X           22 KGLYERSHAIRLCLLAALSGE----SVFLLGPPGIAKSLIARRLKF   63 (500)
T ss_dssp             TTCSSCHHHHHHHHHHHHHTC----EEEEECCSSSSHHHHHHHGGG
T ss_pred             hhhHHHHHHHHHHHHHHhcCC----eeEeecCchHHHHHHHHHHHH
Confidence            468999999998888777653    788999999999999999988

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=97.57  E-value=7.1e-05  Score=54.76  Aligned_cols=48  Identities=21%  Similarity=0.277  Sum_probs=34.7

Q ss_pred             CCCCccccHHHHHHHHHHHhc--C--------CCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087           40 KSRDTVGLDDRMEELLDLLIE--G--------PPQLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        40 ~~~~~vGr~~~~~~l~~~L~~--~--------~~~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ..++++|.+....++.++...  .        -.-.+-+.|+|.+|+||||||+.++.
T Consensus        14 ~~~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~   71 (254)
T 1ixz_A           14 TFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAG   71 (254)
T ss_dssp             CGGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHH
T ss_pred             CHHHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHH
Confidence            345789998887777665431  1        01112388999999999999999988

>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A

Probab=97.54  E-value=0.00018  Score=58.76  Aligned_cols=45  Identities=20%  Similarity=0.273  Sum_probs=34.8

Q ss_pred             CccccHHHHHHHHHHHhc----CCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087           43 DTVGLDDRMEELLDLLIE----GPPQLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        43 ~~vGr~~~~~~l~~~L~~----~~~~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      +++|.++..+.+.+.+..    .......+.++|++|+||||||+.++.
T Consensus        82 di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~  130 (543)
T 3m6a_A           82 EHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAK  130 (543)
T ss_dssp             HCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHH
T ss_pred             HhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHH
Confidence            478888887777655431    222456899999999999999999988

>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20

Probab=97.52  E-value=9.8e-05  Score=57.20  Aligned_cols=46  Identities=13%  Similarity=0.111  Sum_probs=34.6

Q ss_pred             CCccccHHHHHHHHHHHhc----------------------------CCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087           42 RDTVGLDDRMEELLDLLIE----------------------------GPPQLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        42 ~~~vGr~~~~~~l~~~L~~----------------------------~~~~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ..++|.+..++.|...+..                            .......+.++|++|+|||++|+.+++
T Consensus        21 ~~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~   94 (376)
T 1um8_A           21 NYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAK   94 (376)
T ss_dssp             TTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred             hHccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHH
Confidence            3578888888888766620                            011234688999999999999999988

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=97.52  E-value=5e-05  Score=52.38  Aligned_cols=22  Identities=9%  Similarity=0.024  Sum_probs=20.2

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhc
Q 045087           66 SAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        66 ~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      .+|.|.|++|+||||+|+.+..
T Consensus         4 ~~i~l~G~~GsGKST~a~~La~   25 (178)
T 1qhx_A            4 RMIILNGGSSAGKSGIVRCLQS   25 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4788999999999999999877

>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*

Probab=97.51  E-value=3.6e-05  Score=55.94  Aligned_cols=87  Identities=11%  Similarity=-0.125  Sum_probs=45.1

Q ss_pred             CceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCCCCCHHHHHHHHHHHhCCCCCCcccccccHHHHHHHHHH
Q 045087           64 QLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPYTCYADQILDIIIKFLMPSSRLSEIKDKNYEMKKIILHE  143 (157)
Q Consensus        64 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~  143 (157)
                      ...++.++|..|.||||++..+.+  +...+-...+.+......  . ....+++.++....  .....+..++.+.+.+
T Consensus        11 ~G~i~litG~mGsGKTT~ll~~~~--r~~~~g~kVli~~~~~d~--r-~~~~i~srlG~~~~--~~~~~~~~~i~~~i~~   83 (223)
T 2b8t_A           11 IGWIEFITGPMFAGKTAELIRRLH--RLEYADVKYLVFKPKIDT--R-SIRNIQSRTGTSLP--SVEVESAPEILNYIMS   83 (223)
T ss_dssp             CCEEEEEECSTTSCHHHHHHHHHH--HHHHTTCCEEEEEECCCG--G-GCSSCCCCCCCSSC--CEEESSTHHHHHHHHS
T ss_pred             CcEEEEEECCCCCcHHHHHHHHHH--HHHhcCCEEEEEEeccCc--h-HHHHHHHhcCCCcc--ccccCCHHHHHHHHHH
Confidence            357888999999999999977766  333332223333322111  1 11123333332111  1122334556666666


Q ss_pred             HhcCCcE-EEEeeCC
Q 045087          144 YLMTKRY-LIVIDDV  157 (157)
Q Consensus       144 ~L~~kr~-LlVlDdV  157 (157)
                      .+.+.++ +|++|.+
T Consensus        84 ~~~~~~~dvViIDEa   98 (223)
T 2b8t_A           84 NSFNDETKVIGIDEV   98 (223)
T ss_dssp             TTSCTTCCEEEECSG
T ss_pred             HhhCCCCCEEEEecC
Confidence            5554544 8888864

>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}

Probab=97.51  E-value=0.00038  Score=64.24  Aligned_cols=98  Identities=17%  Similarity=0.015  Sum_probs=61.3

Q ss_pred             HHHHHHh-cCCCCceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCCCCCHHHHHHHHHHHhCCCCC-Ccccc
Q 045087           53 ELLDLLI-EGPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPYTCYADQILDIIIKFLMPSSR-LSEIK  130 (157)
Q Consensus        53 ~l~~~L~-~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~l~~i~~~l~~~~~-~~~~~  130 (157)
                      .|..+|. .+-...+.+.|+|++|+|||+||.++..  +....=..++|+++...++...     +..++.+-. ..-..
T Consensus      1414 ~LD~lLG~GGi~~g~~vll~GppGtGKT~LA~ala~--ea~~~G~~v~Fi~~e~~~~~l~-----a~~~G~dl~~l~v~~ 1486 (2050)
T 3cmu_A         1414 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIA--AAQREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQ 1486 (2050)
T ss_dssp             HHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHH--HHHTTTCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEEC
T ss_pred             HHHHhcCCCCccCCeEEEEECCCCCCHHHHHHHHHH--HHHHcCCcEEEEEcccccCHHH-----HHHcCCCchhceeec
Confidence            3555554 2224567999999999999999998877  4443334577888888777655     344442211 00011


Q ss_pred             cccHHHHHHHHHHHhc-CCcEEEEeeCC
Q 045087          131 DKNYEMKKIILHEYLM-TKRYLIVIDDV  157 (157)
Q Consensus       131 ~~~~~~~~~~l~~~L~-~kr~LlVlDdV  157 (157)
                      ..+.++....+.+..+ .+..+||+|.+
T Consensus      1487 ~~~~E~~l~~~~~lvr~~~~~lVVIDsi 1514 (2050)
T 3cmu_A         1487 PDTGEQALEICDALARSGAVDVIVVDSV 1514 (2050)
T ss_dssp             CSSHHHHHHHHHHHHHHTCCSEEEESCG
T ss_pred             CChHHHHHHHHHHHHhcCCCCEEEEcCh
Confidence            2234566666666543 56679999975

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=97.50  E-value=0.00083  Score=48.35  Aligned_cols=49  Identities=14%  Similarity=0.030  Sum_probs=31.6

Q ss_pred             CceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCCCCCHHHHHHHH
Q 045087           64 QLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPYTCYADQILDII  116 (157)
Q Consensus        64 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~l~~i  116 (157)
                      ...++.|+|.+|+||||||..++..  ....=...+|++...  +..++...+
T Consensus        22 ~G~~~~i~G~~GsGKTtl~~~~~~~--~~~~~~~v~~~~~e~--~~~~~~~~~   70 (247)
T 2dr3_A           22 ERNVVLLSGGPGTGKTIFSQQFLWN--GLKMGEPGIYVALEE--HPVQVRQNM   70 (247)
T ss_dssp             TTCEEEEEECTTSSHHHHHHHHHHH--HHHTTCCEEEEESSS--CHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEEccC--CHHHHHHHH
Confidence            4568999999999999999877652  222223566777544  344444433

>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2

Probab=97.49  E-value=0.0014  Score=52.82  Aligned_cols=91  Identities=8%  Similarity=-0.007  Sum_probs=54.2

Q ss_pred             CCceEEEEEeCCCCcHHHHHHHHhcCcccccc-cCeeEEEEcCCCCCHHHHHHHHHHHhCC-CCC---------------
Q 045087           63 PQLSAVTILDSIGLDKTAFAAEAYSSNYMKHY-FDCHAWVQEPYTCYADQILDIIIKFLMP-SSR---------------  125 (157)
Q Consensus        63 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-F~~~~wv~~~~~~~~~~~l~~i~~~l~~-~~~---------------  125 (157)
                      ....++.|.|.+|+||||||..++.+  .... =..++|++...  +..++...++..... +..               
T Consensus       240 ~~G~l~li~G~pG~GKT~lal~~a~~--~a~~~g~~vl~~s~E~--s~~~l~~r~~~~~~~~~~~~~~~~~~g~l~~~~~  315 (503)
T 1q57_A          240 RGGEVIMVTSGSGMVMSTFVRQQALQ--WGTAMGKKVGLAMLEE--SVEETAEDLIGLHNRVRLRQSDSLKREIIENGKF  315 (503)
T ss_dssp             CTTCEEEEEESSCHHHHHHHHHHHHH--HTTTSCCCEEEEESSS--CHHHHHHHHHHHHTTSCCTTCHHHHHHHHHTSHH
T ss_pred             CCCeEEEEeecCCCCchHHHHHHHHH--HHHhcCCcEEEEeccC--CHHHHHHHHHHHHcCCChhhccccccCCCCHHHH
Confidence            44568899999999999999888763  3222 23567777644  455666665443322 100               


Q ss_pred             ----------Cc----c-cccccHHHHHHHHHHHhcC-CcEEEEeeCC
Q 045087          126 ----------LS----E-IKDKNYEMKKIILHEYLMT-KRYLIVIDDV  157 (157)
Q Consensus       126 ----------~~----~-~~~~~~~~~~~~l~~~L~~-kr~LlVlDdV  157 (157)
                                .+    . ....+.+++...+++.... +.-+||+|.+
T Consensus       316 ~~~~~~~~~~~~l~i~~~~~~~~~~~i~~~i~~~~~~~~~~lvVID~l  363 (503)
T 1q57_A          316 DQWFDELFGNDTFHLYDSFAEAETDRLLAKLAYMRSGLGCDVIILDHI  363 (503)
T ss_dssp             HHHHHHHHTTTCEEEECCC---CHHHHHHHHHHHHHTTCCSEEEEECT
T ss_pred             HHHHHHHhccCCEEEECCCCCCCHHHHHHHHHHHHHhcCCCEEEEccc
Confidence                      00    0 0124567777777776543 3458899964

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=97.49  E-value=5.9e-05  Score=51.40  Aligned_cols=20  Identities=25%  Similarity=0.253  Sum_probs=18.6

Q ss_pred             eEEEEEeCCCCcHHHHHHHH
Q 045087           66 SAVTILDSIGLDKTAFAAEA   85 (157)
Q Consensus        66 ~vi~I~G~gGiGKTtLa~~v   85 (157)
                      .+|.|.|++|+||||+|+.+
T Consensus         2 ~~I~l~G~~GsGKsT~a~~L   21 (179)
T 3lw7_A            2 KVILITGMPGSGKSEFAKLL   21 (179)
T ss_dssp             CEEEEECCTTSCHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHH
Confidence            47899999999999999988

>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*

Probab=97.49  E-value=0.00083  Score=51.27  Aligned_cols=39  Identities=18%  Similarity=0.152  Sum_probs=29.9

Q ss_pred             HHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087           48 DDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        48 ~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ++..+.|.+.+..+. -.+.+.++|.+|+|||++|+.+.+
T Consensus         8 ~~~~~~l~~~i~~~~-~~~a~L~~G~~G~GKt~~a~~la~   46 (334)
T 1a5t_A            8 RPDFEKLVASYQAGR-GHHALLIQALPGMGDDALIYALSR   46 (334)
T ss_dssp             HHHHHHHHHHHHTTC-CCSEEEEECCTTSCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCC-cceeEEEECCCCchHHHHHHHHHH
Confidence            555677777776543 345688999999999999998876

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=97.49  E-value=0.00054  Score=54.44  Aligned_cols=24  Identities=17%  Similarity=0.062  Sum_probs=21.4

Q ss_pred             CceEEEEEeCCCCcHHHHHHHHhc
Q 045087           64 QLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        64 ~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ...++.++|.+|+||||++..+..
T Consensus        96 ~~~vI~lvG~~GsGKTTt~~kLA~  119 (433)
T 3kl4_A           96 LPFIIMLVGVQGSGKTTTAGKLAY  119 (433)
T ss_dssp             SSEEEEECCCTTSCHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            468999999999999999988875

>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}

Probab=97.49  E-value=0.00055  Score=52.67  Aligned_cols=100  Identities=16%  Similarity=-0.018  Sum_probs=58.7

Q ss_pred             HHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCCCCCHHHHHHHHHHHhCCC--------
Q 045087           52 EELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPYTCYADQILDIIIKFLMPS--------  123 (157)
Q Consensus        52 ~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~l~~i~~~l~~~--------  123 (157)
                      ..|-+++ .+-....++.|.|.+|+||||+|..++.+.  ...=..++|++..  .+..++...++.....-        
T Consensus        34 ~~LD~~~-gGl~~G~LiiIaG~pG~GKTt~al~ia~~~--a~~g~~Vl~fSlE--ms~~ql~~Rlls~~~~v~~~~l~~g  108 (338)
T 4a1f_A           34 VQLDNYT-SGFNKGSLVIIGARPSMGKTSLMMNMVLSA--LNDDRGVAVFSLE--MSAEQLALRALSDLTSINMHDLESG  108 (338)
T ss_dssp             HHHHHHH-CSBCTTCEEEEEECTTSCHHHHHHHHHHHH--HHTTCEEEEEESS--SCHHHHHHHHHHHHHCCCHHHHHHT
T ss_pred             hHHHHHh-cCCCCCcEEEEEeCCCCCHHHHHHHHHHHH--HHcCCeEEEEeCC--CCHHHHHHHHHHHhhCCCHHHHhcC
Confidence            3444444 333445689999999999999998887732  2222356677754  35566666665432110        


Q ss_pred             ---------------------CCCcccccccHHHHHHHHHHHhcC--CcEEEEeeC
Q 045087          124 ---------------------SRLSEIKDKNYEMKKIILHEYLMT--KRYLIVIDD  156 (157)
Q Consensus       124 ---------------------~~~~~~~~~~~~~~~~~l~~~L~~--kr~LlVlDd  156 (157)
                                           -........+..++...+++..+.  ..-|||+|.
T Consensus       109 ~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~si~~i~~~ir~l~~~~gg~~lIVIDy  164 (338)
T 4a1f_A          109 RLDDDQWENLAKCFDHLSQKKLFFYDKSYVRIEQIRLQLRKLKSQHKELGIAFIDY  164 (338)
T ss_dssp             CCCHHHHHHHHHHHHHHHHSCEEEECCTTCCHHHHHHHHHHHHHHCTTEEEEEEEE
T ss_pred             CCCHHHHHHHHHHHHHHhcCCeEEeCCCCCcHHHHHHHHHHHHHhcCCCCEEEEec
Confidence                                 000001233567777777776543  467889885

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=97.48  E-value=0.00052  Score=51.80  Aligned_cols=24  Identities=21%  Similarity=0.228  Sum_probs=21.4

Q ss_pred             CceEEEEEeCCCCcHHHHHHHHhc
Q 045087           64 QLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        64 ~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ...+++++|.+|+||||++..+..
T Consensus       104 ~g~vi~lvG~~GsGKTTl~~~LA~  127 (296)
T 2px0_A          104 HSKYIVLFGSTGAGKTTTLAKLAA  127 (296)
T ss_dssp             CSSEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            456999999999999999998876

>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*

Probab=97.46  E-value=0.00043  Score=55.74  Aligned_cols=92  Identities=11%  Similarity=0.160  Sum_probs=57.1

Q ss_pred             CceEEEEEeCCCCcHHHHHHHHhcCccc-ccccCeeEEEEcCCCCC-HHHHHHHHHHHhCCC-------CCC---ccccc
Q 045087           64 QLSAVTILDSIGLDKTAFAAEAYSSNYM-KHYFDCHAWVQEPYTCY-ADQILDIIIKFLMPS-------SRL---SEIKD  131 (157)
Q Consensus        64 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~-~~~F~~~~wv~~~~~~~-~~~~l~~i~~~l~~~-------~~~---~~~~~  131 (157)
                      +...++|.|.+|+|||+|+..+.+  .+ +.+-+.++++.++.... ..+++..+...=...       ...   ...+.
T Consensus       164 kGqr~gIfgg~GvGKT~L~~~l~~--~~a~~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~l~~~rtvvV~~t~d~  241 (498)
T 1fx0_B          164 RGGKIGLFGGAGVGKTVLIMELIN--NIAKAHGGVSVFGGVGERTREGNDLYMEMKESGVINEQNIAESKVALVYGQMNE  241 (498)
T ss_dssp             TTCCEEEEECSSSSHHHHHHHHHH--HTTTTCSSCEEEEEESCCSHHHHHHHHHHHHTTSSCSSTTCCCCEEEEEECTTS
T ss_pred             cCCeEEeecCCCCCchHHHHHHHH--HHHhhCCCEEEEEEcccCcHHHHHHHHhhhcccccccccccccceEEEEeCCCC
Confidence            345789999999999999988877  33 23456788888887654 667777776532111       000   00111


Q ss_pred             cc-----HHHHHHHHHHHhc---CCcEEEEeeCC
Q 045087          132 KN-----YEMKKIILHEYLM---TKRYLIVIDDV  157 (157)
Q Consensus       132 ~~-----~~~~~~~l~~~L~---~kr~LlVlDdV  157 (157)
                      ..     .....-.+.++++   ++.+||++||+
T Consensus       242 p~~~R~~~~~~altiAEyfrd~~G~dVLl~~Dsi  275 (498)
T 1fx0_B          242 PPGARMRVGLTALTMAEYFRDVNEQDVLLFIDNI  275 (498)
T ss_dssp             CHHHHTTHHHHHHHTHHHHTTTSCCEEEEEEECS
T ss_pred             CHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccH
Confidence            11     1122334555664   57899999996

>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11

Probab=97.44  E-value=0.00024  Score=56.94  Aligned_cols=51  Identities=8%  Similarity=0.117  Sum_probs=35.0

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhcCcccccc-cCeeEEEEcCCCCC-HHHHHHHHHH
Q 045087           66 SAVTILDSIGLDKTAFAAEAYSSNYMKHY-FDCHAWVQEPYTCY-ADQILDIIIK  118 (157)
Q Consensus        66 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-F~~~~wv~~~~~~~-~~~~l~~i~~  118 (157)
                      ..+.|+|.+|+|||||+..+..+  .... -..++++.+++..+ ..+++..+..
T Consensus       152 q~~~i~G~sGvGKTtL~~~l~~~--~~~~~~~i~V~~~iGerttev~el~~~l~~  204 (473)
T 1sky_E          152 GKIGLFGGAGVGKTVLIQELIHN--IAQEHGGISVFAGVGERTREGNDLYHEMKD  204 (473)
T ss_dssp             CEEEEECCSSSCHHHHHHHHHHH--HHHHTCCCEEEEEESSCHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCccHHHHHHHhh--hhhccCcEEEEeeeccCchHHHHHHHHhhh
Confidence            36889999999999999988873  3322 24557777777643 4455555543

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=97.43  E-value=0.00013  Score=54.14  Aligned_cols=49  Identities=20%  Similarity=0.265  Sum_probs=35.8

Q ss_pred             CCCCCccccHHHHHHHHHHHhc--C--------CCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087           39 SKSRDTVGLDDRMEELLDLLIE--G--------PPQLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        39 ~~~~~~vGr~~~~~~l~~~L~~--~--------~~~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ...++++|.+...+++.++...  .        -.-.+-+.|+|.+|+||||||+.++.
T Consensus        37 ~~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~   95 (278)
T 1iy2_A           37 VTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAG   95 (278)
T ss_dssp             CCGGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCHHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHH
Confidence            3456799999888887766532  1        01112388999999999999999988

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=97.43  E-value=0.00011  Score=51.18  Aligned_cols=24  Identities=13%  Similarity=0.043  Sum_probs=21.7

Q ss_pred             ceEEEEEeCCCCcHHHHHHHHhcC
Q 045087           65 LSAVTILDSIGLDKTAFAAEAYSS   88 (157)
Q Consensus        65 ~~vi~I~G~gGiGKTtLa~~v~~~   88 (157)
                      ..+++|+|++|+|||||++.+...
T Consensus         9 g~~i~l~G~~GsGKSTl~~~La~~   32 (191)
T 1zp6_A            9 GNILLLSGHPGSGKSTIAEALANL   32 (191)
T ss_dssp             TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhc
Confidence            468999999999999999999873

>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}

Probab=97.43  E-value=0.0014  Score=52.07  Aligned_cols=64  Identities=20%  Similarity=-0.017  Sum_probs=41.2

Q ss_pred             HHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCCCCCHHHHHHHHHHH
Q 045087           52 EELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPYTCYADQILDIIIKF  119 (157)
Q Consensus        52 ~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~l~~i~~~  119 (157)
                      ..|-+++ .+-....++.|.|.+|+||||+|..++.+.... .=..++|++..  .+..++...++..
T Consensus       188 ~~LD~~l-gGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~-~g~~vl~~slE--~~~~~l~~R~~~~  251 (444)
T 2q6t_A          188 KELDQLI-GTLGPGSLNIIAARPAMGKTAFALTIAQNAALK-EGVGVGIYSLE--MPAAQLTLRMMCS  251 (444)
T ss_dssp             HHHHHHH-CCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHT-TCCCEEEEESS--SCHHHHHHHHHHH
T ss_pred             Hhhhhhc-CCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHh-CCCeEEEEECC--CCHHHHHHHHHHH
Confidence            4454444 444456789999999999999998887732211 12356777765  3456666666543

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=97.42  E-value=0.00066  Score=51.51  Aligned_cols=38  Identities=18%  Similarity=0.181  Sum_probs=27.6

Q ss_pred             HHHHHHHHHhcC------CCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087           50 RMEELLDLLIEG------PPQLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        50 ~~~~l~~~L~~~------~~~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      -.++|.+.|...      .....++.|+|.+|+||||++..++.
T Consensus        83 ~~~~l~~~l~~~~~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~  126 (306)
T 1vma_A           83 LKEIILEILNFDTKLNVPPEPPFVIMVVGVNGTGKTTSCGKLAK  126 (306)
T ss_dssp             HHHHHHHHTCSCCCCCCCSSSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCCCCcccCCCCeEEEEEcCCCChHHHHHHHHHH
Confidence            345555555332      13457999999999999999988876

>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...

Probab=97.42  E-value=0.00034  Score=56.07  Aligned_cols=53  Identities=11%  Similarity=0.105  Sum_probs=39.0

Q ss_pred             ceEEEEEeCCCCcHHHHHHHHhcCccc-ccccCeeEEEEcCCCC-CHHHHHHHHHHH
Q 045087           65 LSAVTILDSIGLDKTAFAAEAYSSNYM-KHYFDCHAWVQEPYTC-YADQILDIIIKF  119 (157)
Q Consensus        65 ~~vi~I~G~gGiGKTtLa~~v~~~~~~-~~~F~~~~wv~~~~~~-~~~~~l~~i~~~  119 (157)
                      -..++|.|.+|+|||+|+..+.+  .+ +.+-+.++++.++... ...+++..+...
T Consensus       153 GQr~~Ifgg~G~GKT~L~~~i~~--~~~~~~~~v~V~~~iGER~rEv~e~~~~~~~~  207 (482)
T 2ck3_D          153 GGKIGLFGGAGVGKTVLIMELIN--NVAKAHGGYSVFAGVGERTREGNDLYHEMIES  207 (482)
T ss_dssp             TCEEEEEECTTSSHHHHHHHHHH--HTTTTCSSEEEEEEESCCHHHHHHHHHHHHHH
T ss_pred             CCeeeeecCCCCChHHHHHHHHH--hhHhhCCCEEEEEECCCcchHHHHHHHHhhhc
Confidence            45789999999999999988877  32 2334567888888765 356777777654

>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9

Probab=97.42  E-value=0.0082  Score=47.64  Aligned_cols=38  Identities=18%  Similarity=0.092  Sum_probs=28.1

Q ss_pred             HHHHHHHHHhcC-------CCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087           50 RMEELLDLLIEG-------PPQLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        50 ~~~~l~~~L~~~-------~~~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      -.++|.++|...       ....++|.++|.+|+||||++..+..
T Consensus        78 ~~~~l~~~l~~~~~~~~~~~~~~~vI~ivG~~GvGKTT~a~~LA~  122 (433)
T 2xxa_A           78 VRNELVAAMGEENQTLNLAAQPPAVVLMAGLQGAGKTTSVGKLGK  122 (433)
T ss_dssp             HHHHHHHHHCSSSCCCCCCSSSSEEEEEECSTTSSHHHHHHHHHH
T ss_pred             HHHHHHHHhccccccccccCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence            345666666432       13467999999999999999988875

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=97.42  E-value=7.2e-05  Score=51.08  Aligned_cols=22  Identities=14%  Similarity=0.001  Sum_probs=19.8

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhc
Q 045087           66 SAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        66 ~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      .+|.|.|++|+||||+|+.+..
T Consensus         2 ~~i~l~G~~GsGKsT~~~~L~~   23 (173)
T 3kb2_A            2 TLIILEGPDCCFKSTVAAKLSK   23 (173)
T ss_dssp             CEEEEECSSSSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4789999999999999998876

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=97.41  E-value=0.00087  Score=53.37  Aligned_cols=24  Identities=17%  Similarity=0.140  Sum_probs=21.3

Q ss_pred             CceEEEEEeCCCCcHHHHHHHHhc
Q 045087           64 QLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        64 ~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      +..+|.++|.+|+||||++..+..
T Consensus        99 ~p~vIlivG~~G~GKTTt~~kLA~  122 (443)
T 3dm5_A           99 KPTILLMVGIQGSGKTTTVAKLAR  122 (443)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECcCCCCHHHHHHHHHH
Confidence            468999999999999999988865

>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G

Probab=97.40  E-value=8.3e-05  Score=56.61  Aligned_cols=46  Identities=17%  Similarity=0.177  Sum_probs=33.9

Q ss_pred             CCCCccccHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087           40 KSRDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        40 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ..+.++|.+..++.+...+....  ...+.++|.+|+|||+||+.+++
T Consensus        22 ~f~~i~G~~~~~~~l~~~~~~~~--~~~vLl~G~~GtGKT~la~~la~   67 (350)
T 1g8p_A           22 PFSAIVGQEDMKLALLLTAVDPG--IGGVLVFGDRGTGKSTAVRALAA   67 (350)
T ss_dssp             CGGGSCSCHHHHHHHHHHHHCGG--GCCEEEECCGGGCTTHHHHHHHH
T ss_pred             CchhccChHHHHHHHHHHhhCCC--CceEEEECCCCccHHHHHHHHHH
Confidence            34568999887666544443322  23488999999999999999987

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=97.37  E-value=0.0001  Score=50.62  Aligned_cols=22  Identities=18%  Similarity=0.273  Sum_probs=20.1

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhc
Q 045087           66 SAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        66 ~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      .+|.|.|++|+||||+|+.+..
T Consensus         3 ~~I~i~G~~GsGKST~a~~L~~   24 (181)
T 1ly1_A            3 KIILTIGCPGSGKSTWAREFIA   24 (181)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEecCCCCCHHHHHHHHHh
Confidence            4789999999999999999876

>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*

Probab=97.37  E-value=0.0004  Score=59.12  Aligned_cols=48  Identities=25%  Similarity=0.209  Sum_probs=37.0

Q ss_pred             CCCCccccHHHHHHHHHHHhcC-----------CCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087           40 KSRDTVGLDDRMEELLDLLIEG-----------PPQLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        40 ~~~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ....+.|.++..++|.+.+...           ....+-+.++|++|.|||.||+++++
T Consensus       475 ~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~  533 (806)
T 3cf2_A          475 TWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIAN  533 (806)
T ss_dssp             CSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHH
T ss_pred             CHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHH
Confidence            3456788999888888776421           12344578999999999999999999

>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}

Probab=97.36  E-value=0.0013  Score=52.36  Aligned_cols=62  Identities=19%  Similarity=0.059  Sum_probs=37.9

Q ss_pred             HHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCCCCCHHHHHHHHHH
Q 045087           52 EELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPYTCYADQILDIIIK  118 (157)
Q Consensus        52 ~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~l~~i~~  118 (157)
                      ..|-+++ .+-....++.|.|.+|+||||+|..++.+...+  =..++|++...  +..++...++.
T Consensus       185 ~~LD~~l-gGl~~G~liiIaG~pG~GKTtlal~ia~~~a~~--g~~vl~fSlEm--s~~ql~~R~~~  246 (444)
T 3bgw_A          185 TELDRMT-YGYKRRNFVLIAARPSMGKTAFALKQAKNMSDN--DDVVNLHSLEM--GKKENIKRLIV  246 (444)
T ss_dssp             HHHHHHH-SSBCSSCEEEEEECSSSSHHHHHHHHHHHHHHT--TCEEEEECSSS--CTTHHHHHHHH
T ss_pred             HHHHhhc-CCCCCCcEEEEEeCCCCChHHHHHHHHHHHHHc--CCEEEEEECCC--CHHHHHHHHHH
Confidence            3444444 333455689999999999999998887732222  23566776543  33344444443

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=97.35  E-value=0.0001  Score=52.10  Aligned_cols=23  Identities=13%  Similarity=0.197  Sum_probs=21.0

Q ss_pred             ceEEEEEeCCCCcHHHHHHHHhc
Q 045087           65 LSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        65 ~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ...|.|+|++|+||||+++.+..
T Consensus        25 ~~~i~l~G~~GsGKsTl~~~La~   47 (199)
T 3vaa_A           25 MVRIFLTGYMGAGKTTLGKAFAR   47 (199)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHH
Confidence            45899999999999999999976

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=97.35  E-value=0.0015  Score=50.00  Aligned_cols=24  Identities=17%  Similarity=0.088  Sum_probs=21.8

Q ss_pred             CceEEEEEeCCCCcHHHHHHHHhc
Q 045087           64 QLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        64 ~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ...+++|+|..|+||||++..+..
T Consensus       128 ~g~vi~lvG~nGaGKTTll~~Lag  151 (328)
T 3e70_C          128 KPYVIMFVGFNGSGKTTTIAKLAN  151 (328)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            467999999999999999998876

>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A

Probab=97.34  E-value=0.001  Score=52.91  Aligned_cols=52  Identities=17%  Similarity=0.102  Sum_probs=34.3

Q ss_pred             CCceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCCCCCHHHHHHHHH
Q 045087           63 PQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPYTCYADQILDIII  117 (157)
Q Consensus        63 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~l~~i~  117 (157)
                      ....++.|.|.+|+||||||..++.+.... .-..++|++...  +..++...++
T Consensus       201 ~~G~liiI~G~pG~GKTtl~l~ia~~~~~~-~g~~Vl~~s~E~--s~~~l~~r~~  252 (454)
T 2r6a_A          201 QRSDLIIVAARPSVGKTAFALNIAQNVATK-TNENVAIFSLEM--SAQQLVMRML  252 (454)
T ss_dssp             CTTCEEEEECCTTSCHHHHHHHHHHHHHHH-SSCCEEEEESSS--CHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHHHHh-CCCcEEEEECCC--CHHHHHHHHH
Confidence            445699999999999999998887732211 112567777543  3455555543

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=97.32  E-value=0.00011  Score=50.99  Aligned_cols=23  Identities=17%  Similarity=0.362  Sum_probs=20.6

Q ss_pred             ceEEEEEeCCCCcHHHHHHHHhc
Q 045087           65 LSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        65 ~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      .+.|.++|++|+||||+|+.+..
T Consensus         5 ~~~i~l~G~~GsGKst~a~~La~   27 (185)
T 3trf_A            5 LTNIYLIGLMGAGKTSVGSQLAK   27 (185)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            35788999999999999999976

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=97.32  E-value=0.00016  Score=50.37  Aligned_cols=23  Identities=9%  Similarity=0.086  Sum_probs=20.8

Q ss_pred             ceEEEEEeCCCCcHHHHHHHHhc
Q 045087           65 LSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        65 ~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ..+|.|.|++|+||||+|+.+..
T Consensus         5 ~~~I~l~G~~GsGKST~~~~L~~   27 (193)
T 2rhm_A            5 PALIIVTGHPATGKTTLSQALAT   27 (193)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999999876

>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*

Probab=97.32  E-value=0.00026  Score=56.37  Aligned_cols=46  Identities=15%  Similarity=0.187  Sum_probs=35.6

Q ss_pred             CCccccHHHHHHHHHHHhcC------------CCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087           42 RDTVGLDDRMEELLDLLIEG------------PPQLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        42 ~~~vGr~~~~~~l~~~L~~~------------~~~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ..++|.++.++.|...+...            ....+-+.++|++|+|||++|+.+..
T Consensus        15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~   72 (444)
T 1g41_A           15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAK   72 (444)
T ss_dssp             TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred             HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHH
Confidence            56899998888887666321            11235688999999999999999987

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=97.31  E-value=0.00014  Score=50.45  Aligned_cols=22  Identities=14%  Similarity=0.114  Sum_probs=20.2

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhc
Q 045087           66 SAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        66 ~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      .+|.|.|++|+||||+|+.+.+
T Consensus         2 ~~I~i~G~~GsGKsT~~~~L~~   23 (194)
T 1nks_A            2 KIGIVTGIPGVGKSTVLAKVKE   23 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4789999999999999999987

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=97.30  E-value=0.00016  Score=51.12  Aligned_cols=24  Identities=13%  Similarity=0.104  Sum_probs=21.7

Q ss_pred             CceEEEEEeCCCCcHHHHHHHHhc
Q 045087           64 QLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        64 ~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ...++.|+|++|.|||||++.+..
T Consensus        24 ~g~~i~l~G~sGsGKSTl~~~La~   47 (200)
T 3uie_A           24 KGCVIWVTGLSGSGKSTLACALNQ   47 (200)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            357999999999999999999987

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=97.29  E-value=0.0001  Score=50.50  Aligned_cols=22  Identities=9%  Similarity=0.277  Sum_probs=20.1

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhc
Q 045087           66 SAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        66 ~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      .+|+|+|++|+||||+++.+..
T Consensus         5 ~~i~l~G~~GsGKSTl~~~La~   26 (173)
T 1kag_A            5 RNIFLVGPMGAGKSTIGRQLAQ   26 (173)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            4789999999999999999877

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=97.28  E-value=0.00027  Score=51.67  Aligned_cols=40  Identities=15%  Similarity=-0.024  Sum_probs=28.1

Q ss_pred             HHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087           48 DDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        48 ~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ...+.++.+.+.........|.|.|++|+||||+|+.+.+
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKsT~a~~L~~   51 (243)
T 3tlx_A           12 IDLLNELKRRYACLSKPDGRYIFLGAPGSGKGTQSLNLKK   51 (243)
T ss_dssp             HHHHHHHHHHHHHHTSCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccCCCcEEEEECCCCCCHHHHHHHHHH
Confidence            3344455444433223467899999999999999998865

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=97.27  E-value=0.00015  Score=50.38  Aligned_cols=23  Identities=9%  Similarity=0.235  Sum_probs=20.8

Q ss_pred             ceEEEEEeCCCCcHHHHHHHHhc
Q 045087           65 LSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        65 ~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ..+++|+|++|+|||||++.+..
T Consensus         5 g~~i~i~GpsGsGKSTL~~~L~~   27 (180)
T 1kgd_A            5 RKTLVLLGAHGVGRRHIKNTLIT   27 (180)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHh
Confidence            35899999999999999999876

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=97.27  E-value=0.00049  Score=48.44  Aligned_cols=23  Identities=13%  Similarity=-0.070  Sum_probs=20.8

Q ss_pred             ceEEEEEeCCCCcHHHHHHHHhc
Q 045087           65 LSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        65 ~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ...|.|.|++|+||||+|+.+..
T Consensus         4 ~~~I~i~G~~GsGKsT~~~~L~~   26 (213)
T 2plr_A            4 GVLIAFEGIDGSGKSSQATLLKD   26 (213)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHH
Confidence            35899999999999999999977

>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}

Probab=97.24  E-value=0.00038  Score=58.83  Aligned_cols=46  Identities=15%  Similarity=0.261  Sum_probs=36.6

Q ss_pred             CCccccHHHHHHHHHHHhcCC-------CCceEEEEEeCCCCcHHHHHHHHhc
Q 045087           42 RDTVGLDDRMEELLDLLIEGP-------PQLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        42 ~~~vGr~~~~~~l~~~L~~~~-------~~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ..++|.+..++.+.+.+....       .....+.++|.+|+|||++|+.+++
T Consensus       491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~  543 (758)
T 3pxi_A          491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAE  543 (758)
T ss_dssp             TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHH
T ss_pred             CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHH
Confidence            568999999988888775321       1223689999999999999999987

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=97.24  E-value=0.00026  Score=48.68  Aligned_cols=24  Identities=21%  Similarity=0.230  Sum_probs=21.2

Q ss_pred             CceEEEEEeCCCCcHHHHHHHHhc
Q 045087           64 QLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        64 ~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ...+++|+|++|+||||+++.+..
T Consensus         7 ~g~~i~l~G~~GsGKSTl~~~l~~   30 (175)
T 1knq_A            7 DHHIYVLMGVSGSGKSAVASEVAH   30 (175)
T ss_dssp             TSEEEEEECSTTSCHHHHHHHHHH
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHH
Confidence            356899999999999999998876

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=97.24  E-value=0.00019  Score=52.61  Aligned_cols=25  Identities=8%  Similarity=0.049  Sum_probs=21.7

Q ss_pred             CCceEEEEEeCCCCcHHHHHHHHhc
Q 045087           63 PQLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        63 ~~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      .+..+|+|.|++|+||||+|+.+..
T Consensus        20 ~~~~iI~I~G~~GSGKST~a~~L~~   44 (252)
T 1uj2_A           20 GEPFLIGVSGGTASGKSSVCAKIVQ   44 (252)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHH
Confidence            3467899999999999999998876

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=97.23  E-value=0.00017  Score=50.08  Aligned_cols=22  Identities=18%  Similarity=0.178  Sum_probs=20.3

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhc
Q 045087           66 SAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        66 ~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      .+|.|.|++|+||||+++.+..
T Consensus         4 ~~I~i~G~~GsGKsT~~~~L~~   25 (192)
T 1kht_A            4 KVVVVTGVPGVGSTTSSQLAMD   25 (192)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999999877

>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}

Probab=97.23  E-value=0.0013  Score=60.88  Aligned_cols=101  Identities=16%  Similarity=-0.023  Sum_probs=64.0

Q ss_pred             HHHHHHHHHh-cCCCCceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCCCCCHHHHHHHHHHHhCCCCCCcc
Q 045087           50 RMEELLDLLI-EGPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPYTCYADQILDIIIKFLMPSSRLSE  128 (157)
Q Consensus        50 ~~~~l~~~L~-~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~l~~i~~~l~~~~~~~~  128 (157)
                      -...|-.+|. .+-....++.|+|.+|+||||||..+..  .....-..++|++...+++...     +..++.+...-.
T Consensus       367 G~~~LD~lLG~GGl~~G~lilI~G~pGsGKTtLaLqia~--~~a~~G~~vlyis~E~s~~~~~-----a~~lGvd~~~L~  439 (2050)
T 3cmu_A          367 GSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIA--AAQREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLL  439 (2050)
T ss_dssp             SCHHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHH--HHHTTTCCEEEECTTSCCCHHH-----HHHTTCCTTTCE
T ss_pred             CCHHHHHHhccCCccCCcEEEEEeCCCCCHHHHHHHHHH--HHHhcCCeEEEEEcCCCHHHHH-----HHHcCCCHHHeE
Confidence            3455655554 3334567999999999999999988877  3333334678888877776432     445544321000


Q ss_pred             -cccccHHHHHHHHHHHh-cCCcEEEEeeCC
Q 045087          129 -IKDKNYEMKKIILHEYL-MTKRYLIVIDDV  157 (157)
Q Consensus       129 -~~~~~~~~~~~~l~~~L-~~kr~LlVlDdV  157 (157)
                       ....+.+++.+.++... .++.-|||+|.+
T Consensus       440 I~~~~~~e~il~~~~~lv~~~~~~lIVIDSL  470 (2050)
T 3cmu_A          440 CSQPDTGEQALEICDALARSGAVDVIVVDSV  470 (2050)
T ss_dssp             EECCSSHHHHHHHHHHHHHHTCCSEEEESCG
T ss_pred             EeCCCCHHHHHHHHHHHHHhcCCcEEEECCH
Confidence             12345677777777655 345679999964

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=97.22  E-value=0.00013  Score=51.43  Aligned_cols=23  Identities=9%  Similarity=0.201  Sum_probs=20.7

Q ss_pred             ceEEEEEeCCCCcHHHHHHHHhc
Q 045087           65 LSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        65 ~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ..+|.|.|++|+||||+|+.+..
T Consensus        18 ~~~I~l~G~~GsGKSTla~~L~~   40 (202)
T 3t61_A           18 PGSIVVMGVSGSGKSSVGEAIAE   40 (202)
T ss_dssp             SSCEEEECSTTSCHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            45899999999999999998876

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=97.21  E-value=0.0002  Score=50.62  Aligned_cols=23  Identities=22%  Similarity=0.225  Sum_probs=21.0

Q ss_pred             ceEEEEEeCCCCcHHHHHHHHhc
Q 045087           65 LSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        65 ~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ..+++|+|++|+|||||++.+..
T Consensus        29 g~~i~l~G~~GsGKSTl~~~L~~   51 (200)
T 4eun_A           29 TRHVVVMGVSGSGKTTIAHGVAD   51 (200)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999999876

>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*

Probab=97.20  E-value=0.0011  Score=60.49  Aligned_cols=99  Identities=17%  Similarity=0.010  Sum_probs=62.6

Q ss_pred             HHHHHHHh-cCCCCceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCCCCCHHHHHHHHHHHhCCCCC-Cccc
Q 045087           52 EELLDLLI-EGPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPYTCYADQILDIIIKFLMPSSR-LSEI  129 (157)
Q Consensus        52 ~~l~~~L~-~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~l~~i~~~l~~~~~-~~~~  129 (157)
                      ..|-.+|. .+-....++.|+|.+|+||||||.++..  .....=..++|++...+++..     .+..++.+.+ .--.
T Consensus       369 ~~LD~lLg~GGl~~G~lilI~G~pGsGKTtLaLq~a~--~~~~~G~~vlyis~E~s~~~~-----~a~~lGvd~~~L~i~  441 (1706)
T 3cmw_A          369 LSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIA--AAQREGKTCAFIDAEHALDPI-----YARKLGVDIDNLLCS  441 (1706)
T ss_dssp             HHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHH--HHHHTTCCEEEECTTSCCCHH-----HHHHTTCCGGGCEEE
T ss_pred             HHHHHHhccCCcCCCcEEEEEeCCCCCHHHHHHHHHH--HHHHhCCCeEEEEccCchHHH-----HHHHcCCCHHHeEEc
Confidence            45555554 3334567999999999999999988876  333333468899888777653     1445544221 0002


Q ss_pred             ccccHHHHHHHHHHHh-cCCcEEEEeeCC
Q 045087          130 KDKNYEMKKIILHEYL-MTKRYLIVIDDV  157 (157)
Q Consensus       130 ~~~~~~~~~~~l~~~L-~~kr~LlVlDdV  157 (157)
                      ...+.+++...+.... ..+.-+||+|.+
T Consensus       442 ~~~~~e~~l~~l~~lv~~~~~~lVVIDSL  470 (1706)
T 3cmw_A          442 QPDTGEQALEICDALARSGAVDVIVVDSV  470 (1706)
T ss_dssp             CCSSHHHHHHHHHHHHHHTCCSEEEESCS
T ss_pred             CCCCHHHHHHHHHHHHHhcCCCEEEECCH
Confidence            2345677777776655 345569999975

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=97.19  E-value=0.00023  Score=49.66  Aligned_cols=24  Identities=21%  Similarity=0.152  Sum_probs=21.3

Q ss_pred             CceEEEEEeCCCCcHHHHHHHHhc
Q 045087           64 QLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        64 ~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      +...|.|+|++|+||||+++.+..
T Consensus         9 ~~~~I~l~G~~GsGKSTv~~~La~   32 (184)
T 1y63_A            9 KGINILITGTPGTGKTSMAEMIAA   32 (184)
T ss_dssp             SSCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHH
Confidence            346899999999999999998877

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=97.19  E-value=0.00016  Score=49.98  Aligned_cols=23  Identities=26%  Similarity=0.374  Sum_probs=20.5

Q ss_pred             ceEEEEEeCCCCcHHHHHHHHhc
Q 045087           65 LSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        65 ~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      .+.|.|+|++|+||||+++.+.+
T Consensus        11 ~~~i~i~G~~GsGKst~~~~l~~   33 (180)
T 3iij_A           11 LPNILLTGTPGVGKTTLGKELAS   33 (180)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHH
T ss_pred             CCeEEEEeCCCCCHHHHHHHHHH
Confidence            45788999999999999999876

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=97.19  E-value=0.00025  Score=49.87  Aligned_cols=23  Identities=17%  Similarity=0.144  Sum_probs=20.6

Q ss_pred             ceEEEEEeCCCCcHHHHHHHHhc
Q 045087           65 LSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        65 ~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ..+++|+|+.|+|||||++.+..
T Consensus         7 g~ii~l~Gp~GsGKSTl~~~L~~   29 (205)
T 3tr0_A            7 ANLFIISAPSGAGKTSLVRALVK   29 (205)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CcEEEEECcCCCCHHHHHHHHHh
Confidence            35899999999999999998876

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=97.18  E-value=0.00024  Score=49.55  Aligned_cols=23  Identities=9%  Similarity=0.107  Sum_probs=20.8

Q ss_pred             ceEEEEEeCCCCcHHHHHHHHhc
Q 045087           65 LSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        65 ~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ..+|.|.|++|+||||+|+.+.+
T Consensus         9 ~~~I~l~G~~GsGKsT~~~~La~   31 (196)
T 2c95_A            9 TNIIFVVGGPGSGKGTQCEKIVQ   31 (196)
T ss_dssp             SCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999998876

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=97.18  E-value=0.0003  Score=49.75  Aligned_cols=24  Identities=17%  Similarity=0.083  Sum_probs=21.8

Q ss_pred             CceEEEEEeCCCCcHHHHHHHHhc
Q 045087           64 QLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        64 ~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ...+++|+|.+|.||||+|+.+..
T Consensus        20 ~~~~i~i~G~~GsGKSTl~~~L~~   43 (207)
T 2qt1_A           20 KTFIIGISGVTNSGKTTLAKNLQK   43 (207)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            457899999999999999999877

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=97.18  E-value=0.0002  Score=50.15  Aligned_cols=21  Identities=24%  Similarity=0.482  Sum_probs=19.4

Q ss_pred             EEEEEeCCCCcHHHHHHHHhc
Q 045087           67 AVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        67 vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      .|+|.|++|+||||+++.+.+
T Consensus         2 ~I~i~G~~GsGKsT~~~~L~~   22 (205)
T 2jaq_A            2 KIAIFGTVGAGKSTISAEISK   22 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCccCHHHHHHHHHH
Confidence            688999999999999999877

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=97.18  E-value=0.00023  Score=49.40  Aligned_cols=23  Identities=22%  Similarity=0.134  Sum_probs=20.5

Q ss_pred             ceEEEEEeCCCCcHHHHHHHHhc
Q 045087           65 LSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        65 ~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ..+|.|.|++|+||||+|+.+..
T Consensus         3 ~~~I~l~G~~GsGKsT~a~~L~~   25 (196)
T 1tev_A            3 PLVVFVLGGPGAGKGTQCARIVE   25 (196)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            35799999999999999998876

>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A

Probab=97.18  E-value=0.00018  Score=56.43  Aligned_cols=42  Identities=10%  Similarity=-0.162  Sum_probs=29.0

Q ss_pred             CceEEEEEeCCCCcHHHHHHHHhcCccccc-ccC-eeEEEEcCCCC
Q 045087           64 QLSAVTILDSIGLDKTAFAAEAYSSNYMKH-YFD-CHAWVQEPYTC  107 (157)
Q Consensus        64 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~F~-~~~wv~~~~~~  107 (157)
                      +...++|+|.+|+|||||++.+.+  .+.. +=+ .++++.+++..
T Consensus       173 rGQr~~IvG~sG~GKTtLl~~Iar--~i~~~~~~v~~I~~lIGER~  216 (422)
T 3ice_A          173 RGQRGLIVAPPKAGKTMLLQNIAQ--SIAYNHPDCVLMVLLIDERP  216 (422)
T ss_dssp             TTCEEEEECCSSSSHHHHHHHHHH--HHHHHCTTSEEEEEEESSCH
T ss_pred             CCcEEEEecCCCCChhHHHHHHHH--HHhhcCCCeeEEEEEecCCh
Confidence            345899999999999999998877  3322 112 23456677654

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=97.17  E-value=0.00028  Score=49.44  Aligned_cols=24  Identities=29%  Similarity=0.241  Sum_probs=22.0

Q ss_pred             CceEEEEEeCCCCcHHHHHHHHhc
Q 045087           64 QLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        64 ~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      +..+|+|+|+.|+||||+|+.+..
T Consensus         7 ~~~~I~i~G~~GsGKST~~~~La~   30 (203)
T 1uf9_A            7 HPIIIGITGNIGSGKSTVAALLRS   30 (203)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHH
Confidence            467899999999999999999887

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=97.17  E-value=0.00025  Score=49.90  Aligned_cols=23  Identities=9%  Similarity=0.147  Sum_probs=20.8

Q ss_pred             ceEEEEEeCCCCcHHHHHHHHhc
Q 045087           65 LSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        65 ~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ..+++|+|++|+||||+++.+..
T Consensus         6 g~~i~l~G~~GsGKSTl~~~L~~   28 (207)
T 2j41_A            6 GLLIVLSGPSGVGKGTVRKRIFE   28 (207)
T ss_dssp             CCEEEEECSTTSCHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            45899999999999999999876

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=97.16  E-value=0.00025  Score=50.52  Aligned_cols=23  Identities=9%  Similarity=0.159  Sum_probs=21.1

Q ss_pred             ceEEEEEeCCCCcHHHHHHHHhc
Q 045087           65 LSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        65 ~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ..+++|+|++|+|||||++.+..
T Consensus         8 g~~i~l~GpsGsGKsTl~~~L~~   30 (208)
T 3tau_A            8 GLLIVLSGPSGVGKGTVREAVFK   30 (208)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CcEEEEECcCCCCHHHHHHHHHh
Confidence            46899999999999999999977

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=97.15  E-value=0.00019  Score=50.90  Aligned_cols=23  Identities=13%  Similarity=0.307  Sum_probs=20.8

Q ss_pred             ceEEEEEeCCCCcHHHHHHHHhc
Q 045087           65 LSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        65 ~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ..++.|+|++|+|||||++.+..
T Consensus        12 ~~~i~l~G~sGsGKsTl~~~L~~   34 (204)
T 2qor_A           12 IPPLVVCGPSGVGKGTLIKKVLS   34 (204)
T ss_dssp             CCCEEEECCTTSCHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            46889999999999999999876

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=97.15  E-value=0.00034  Score=54.17  Aligned_cols=43  Identities=23%  Similarity=0.258  Sum_probs=31.1

Q ss_pred             cccHHHHHHHHHHHhc--CCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087           45 VGLDDRMEELLDLLIE--GPPQLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        45 vGr~~~~~~l~~~L~~--~~~~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ++.+.-++++.+.+..  ..+....+.|+|++|+||||+++.++.
T Consensus         2 ~~~~~L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~   46 (359)
T 2ga8_A            2 VDTHKLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQ   46 (359)
T ss_dssp             CCHHHHHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHH
Confidence            4445556666666632  223456789999999999999998877

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=97.15  E-value=0.00023  Score=48.69  Aligned_cols=24  Identities=17%  Similarity=0.300  Sum_probs=20.6

Q ss_pred             CceEEEEEeCCCCcHHHHHHHHhc
Q 045087           64 QLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        64 ~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ...+|.|.|++|+||||+|+.+..
T Consensus         6 ~~~~i~l~G~~GsGKSTva~~La~   29 (168)
T 1zuh_A            6 HMQHLVLIGFMGSGKSSLAQELGL   29 (168)
T ss_dssp             --CEEEEESCTTSSHHHHHHHHHH
T ss_pred             ccceEEEECCCCCCHHHHHHHHHH
Confidence            457899999999999999999877

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=97.14  E-value=0.00031  Score=48.48  Aligned_cols=23  Identities=35%  Similarity=0.566  Sum_probs=20.1

Q ss_pred             ceEEEEEeCCCCcHHHHHHHHhc
Q 045087           65 LSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        65 ~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ..+++|+|.+|.|||||++.++.
T Consensus         9 gei~~l~G~nGsGKSTl~~~~~~   31 (171)
T 4gp7_A            9 LSLVVLIGSSGSGKSTFAKKHFK   31 (171)
T ss_dssp             SEEEEEECCTTSCHHHHHHHHSC
T ss_pred             CEEEEEECCCCCCHHHHHHHHcc
Confidence            46899999999999999997554

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=97.14  E-value=0.0003  Score=49.50  Aligned_cols=24  Identities=21%  Similarity=0.249  Sum_probs=21.5

Q ss_pred             CceEEEEEeCCCCcHHHHHHHHhc
Q 045087           64 QLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        64 ~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      +..+|.|.|++|+||||+|+.+.+
T Consensus        14 ~~~~I~l~G~~GsGKsT~~~~L~~   37 (203)
T 1ukz_A           14 QVSVIFVLGGPGAGKGTQCEKLVK   37 (203)
T ss_dssp             TCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            457899999999999999998876

>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A

Probab=97.13  E-value=0.0024  Score=50.58  Aligned_cols=24  Identities=21%  Similarity=0.051  Sum_probs=21.2

Q ss_pred             CceEEEEEeCCCCcHHHHHHHHhc
Q 045087           64 QLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        64 ~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ...++.++|.+|+||||++..+..
T Consensus        97 ~~~vi~i~G~~GsGKTT~~~~LA~  120 (425)
T 2ffh_A           97 DRNLWFLVGLQGSGKTTTAAKLAL  120 (425)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            357899999999999999988876

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=97.13  E-value=0.0006  Score=51.14  Aligned_cols=24  Identities=17%  Similarity=0.212  Sum_probs=21.3

Q ss_pred             CceEEEEEeCCCCcHHHHHHHHhc
Q 045087           64 QLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        64 ~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ...++.|.|++|+||||+|+.+..
T Consensus        32 ~~~livl~G~sGsGKSTla~~L~~   55 (287)
T 1gvn_B           32 SPTAFLLGGQPGSGKTSLRSAIFE   55 (287)
T ss_dssp             SCEEEEEECCTTSCTHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            457888999999999999999876

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=97.13  E-value=0.00028  Score=52.02  Aligned_cols=23  Identities=13%  Similarity=0.273  Sum_probs=20.9

Q ss_pred             ceEEEEEeCCCCcHHHHHHHHhc
Q 045087           65 LSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        65 ~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ..+|.|.|++|+||||+|+.+..
T Consensus         4 ~~lIvl~G~pGSGKSTla~~La~   26 (260)
T 3a4m_A            4 IMLIILTGLPGVGKSTFSKNLAK   26 (260)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEEEcCCCCCHHHHHHHHHH
Confidence            46899999999999999999876

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=97.13  E-value=0.00031  Score=48.95  Aligned_cols=22  Identities=14%  Similarity=0.144  Sum_probs=19.9

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhc
Q 045087           66 SAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        66 ~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      .+++|+|++|+|||||++.+..
T Consensus         3 ~ii~l~G~~GaGKSTl~~~L~~   24 (189)
T 2bdt_A            3 KLYIITGPAGVGKSTTCKRLAA   24 (189)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCcHHHHHHHHhc
Confidence            4789999999999999999975

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=97.12  E-value=0.00034  Score=49.54  Aligned_cols=24  Identities=17%  Similarity=0.094  Sum_probs=21.5

Q ss_pred             CceEEEEEeCCCCcHHHHHHHHhc
Q 045087           64 QLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        64 ~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ...+++|+|..|.|||||++.+..
T Consensus         5 ~~~~i~i~G~~GsGKSTl~~~l~~   28 (211)
T 3asz_A            5 KPFVIGIAGGTASGKTTLAQALAR   28 (211)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHH
Confidence            356899999999999999998877

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=97.12  E-value=0.00018  Score=50.77  Aligned_cols=22  Identities=14%  Similarity=0.321  Sum_probs=19.6

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhc
Q 045087           66 SAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        66 ~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      +.|.|+|++|+|||||++.+..
T Consensus         2 RpIVi~GPSG~GK~Tl~~~L~~   23 (186)
T 1ex7_A            2 RPIVISGPSGTGKSTLLKKLFA   23 (186)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4578999999999999999876

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=97.12  E-value=0.00079  Score=47.52  Aligned_cols=23  Identities=4%  Similarity=-0.083  Sum_probs=21.1

Q ss_pred             ceEEEEEeCCCCcHHHHHHHHhc
Q 045087           65 LSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        65 ~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ..+|.|.|++|+||||+|+.+.+
T Consensus         9 ~~~I~l~G~~GsGKsT~~~~L~~   31 (215)
T 1nn5_A            9 GALIVLEGVDRAGKSTQSRKLVE   31 (215)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            45899999999999999999987

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=97.12  E-value=0.0056  Score=49.43  Aligned_cols=24  Identities=13%  Similarity=0.101  Sum_probs=21.7

Q ss_pred             CceEEEEEeCCCCcHHHHHHHHhc
Q 045087           64 QLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        64 ~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ...+++|+|..|+|||||++.+..
T Consensus       292 ~GeVI~LVGpNGSGKTTLl~~LAg  315 (503)
T 2yhs_A          292 APFVILMVGVNGVGKTTTIGKLAR  315 (503)
T ss_dssp             TTEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCcccHHHHHHHHHH
Confidence            467999999999999999998876

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=97.12  E-value=0.00027  Score=52.00  Aligned_cols=22  Identities=18%  Similarity=0.015  Sum_probs=19.9

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhc
Q 045087           66 SAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        66 ~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      .++.|+|++|+||||||+.+..
T Consensus         2 ~li~I~G~~GSGKSTla~~La~   23 (253)
T 2ze6_A            2 LLHLIYGPTCSGKTDMAIQIAQ   23 (253)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHh
Confidence            4789999999999999999865

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=97.11  E-value=0.00031  Score=48.64  Aligned_cols=23  Identities=26%  Similarity=0.150  Sum_probs=20.5

Q ss_pred             ceEEEEEeCCCCcHHHHHHHHhc
Q 045087           65 LSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        65 ~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ...|.+.|++|+||||+|+.+.+
T Consensus         4 g~~I~l~G~~GsGKST~~~~La~   26 (186)
T 3cm0_A            4 GQAVIFLGPPGAGKGTQASRLAQ   26 (186)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            35789999999999999999875

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=97.11  E-value=0.0007  Score=51.75  Aligned_cols=42  Identities=10%  Similarity=0.105  Sum_probs=28.8

Q ss_pred             ccHHHHHHHHHHHhcC--CCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087           46 GLDDRMEELLDLLIEG--PPQLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        46 Gr~~~~~~l~~~L~~~--~~~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      |-...+..+...+...  .....+++|.|.+|+|||||++.+..
T Consensus        71 ~~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~  114 (321)
T 3tqc_A           71 TARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKA  114 (321)
T ss_dssp             HHHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence            3334444444444433  24566999999999999999998866

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=97.10  E-value=0.00074  Score=52.09  Aligned_cols=37  Identities=19%  Similarity=0.128  Sum_probs=28.3

Q ss_pred             HHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087           51 MEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        51 ~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ..++...+.....+..+|+|+|.+|+|||||+..+..
T Consensus        65 ~~~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~  101 (355)
T 3p32_A           65 AQQLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGM  101 (355)
T ss_dssp             HHHHHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHH
T ss_pred             HHHHHHHhHhhcCCceEEEEECCCCCCHHHHHHHHHH
Confidence            4455555554445678999999999999999988865

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=97.10  E-value=0.00019  Score=49.73  Aligned_cols=22  Identities=9%  Similarity=0.123  Sum_probs=19.7

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhc
Q 045087           66 SAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        66 ~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ++|.|+|++|+||||+|+.+..
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~   24 (184)
T 2iyv_A            3 PKAVLVGLPGSGKSTIGRRLAK   24 (184)
T ss_dssp             CSEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            3589999999999999998876

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=97.10  E-value=0.00035  Score=48.60  Aligned_cols=24  Identities=21%  Similarity=0.066  Sum_probs=21.6

Q ss_pred             CceEEEEEeCCCCcHHHHHHHHhc
Q 045087           64 QLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        64 ~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ...+|.+.|++|+||||+++.+..
T Consensus        12 ~~~~i~l~G~~GsGKsT~~~~L~~   35 (186)
T 2yvu_A           12 KGIVVWLTGLPGSGKTTIATRLAD   35 (186)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHH
Confidence            457899999999999999999877

>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}

Probab=97.10  E-value=0.00098  Score=54.96  Aligned_cols=42  Identities=12%  Similarity=0.192  Sum_probs=36.6

Q ss_pred             CCccccHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087           42 RDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        42 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      +.++|.+..++.+...+..+    ..+.|+|.+|+||||||+.++.
T Consensus        41 ~~i~G~~~~l~~l~~~i~~g----~~vll~Gp~GtGKTtlar~ia~   82 (604)
T 3k1j_A           41 DQVIGQEHAVEVIKTAANQK----RHVLLIGEPGTGKSMLGQAMAE   82 (604)
T ss_dssp             HHCCSCHHHHHHHHHHHHTT----CCEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEECchhhHhhccccccCC----CEEEEEeCCCCCHHHHHHHHhc
Confidence            56899999998888777665    3789999999999999999988

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=97.09  E-value=0.00029  Score=49.24  Aligned_cols=23  Identities=13%  Similarity=0.114  Sum_probs=20.7

Q ss_pred             ceEEEEEeCCCCcHHHHHHHHhc
Q 045087           65 LSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        65 ~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ..+|+|.|++|+||||+|+.+.+
T Consensus        12 ~~~I~l~G~~GsGKsT~a~~L~~   34 (199)
T 2bwj_A           12 CKIIFIIGGPGSGKGTQCEKLVE   34 (199)
T ss_dssp             SCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            35899999999999999998877

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=97.09  E-value=0.00075  Score=48.10  Aligned_cols=36  Identities=19%  Similarity=0.212  Sum_probs=26.7

Q ss_pred             HHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087           50 RMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        50 ~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ..+.+..++...  ....|.|+|.+|+|||||+..+..
T Consensus        25 ~a~~~r~~~~~~--~~~~i~ivG~~gvGKTtl~~~l~~   60 (226)
T 2hf9_A           25 LADKNRKLLNKH--GVVAFDFMGAIGSGKTLLIEKLID   60 (226)
T ss_dssp             HHHHHHHHHHHT--TCEEEEEEESTTSSHHHHHHHHHH
T ss_pred             HHHHHHHHHHhC--CCeEEEEEcCCCCCHHHHHHHHHH
Confidence            344455544332  467899999999999999988876

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=97.09  E-value=0.0003  Score=49.59  Aligned_cols=22  Identities=18%  Similarity=0.228  Sum_probs=19.8

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhc
Q 045087           66 SAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        66 ~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      .+|+|+|+.|+||||+++.+..
T Consensus         2 ~~i~i~G~~GsGKSTl~~~L~~   23 (204)
T 2if2_A            2 KRIGLTGNIGCGKSTVAQMFRE   23 (204)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHH
Confidence            3689999999999999998876

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=97.09  E-value=0.00035  Score=49.31  Aligned_cols=22  Identities=27%  Similarity=0.200  Sum_probs=20.0

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhc
Q 045087           66 SAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        66 ~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      .+++|+|+.|+||||+++.+..
T Consensus         3 ~~i~l~G~~GsGKST~~~~La~   24 (206)
T 1jjv_A            3 YIVGLTGGIGSGKTTIANLFTD   24 (206)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHT
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999999866

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=97.09  E-value=0.00028  Score=50.44  Aligned_cols=22  Identities=18%  Similarity=0.190  Sum_probs=20.0

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhc
Q 045087           66 SAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        66 ~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      .+|+|+|++|+||||+|+.+..
T Consensus         6 ~~i~i~G~~GsGKSTl~~~L~~   27 (227)
T 1cke_A            6 PVITIDGPSGAGKGTLCKAMAE   27 (227)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999998865

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=97.08  E-value=0.00034  Score=48.47  Aligned_cols=23  Identities=22%  Similarity=0.166  Sum_probs=20.7

Q ss_pred             ceEEEEEeCCCCcHHHHHHHHhc
Q 045087           65 LSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        65 ~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ..+|.|.|++|+||||+|+.+.+
T Consensus         6 ~~~I~l~G~~GsGKsT~~~~L~~   28 (194)
T 1qf9_A            6 PNVVFVLGGPGSGKGTQCANIVR   28 (194)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999998876

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=97.08  E-value=0.00052  Score=48.78  Aligned_cols=40  Identities=25%  Similarity=0.218  Sum_probs=29.7

Q ss_pred             ccHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087           46 GLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        46 Gr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      +.++..+.+...+...  +.+.+.|+|.+|+|||||+..+..
T Consensus        13 ~~~~~~~~~~~~~~~~--~~~~i~i~G~~g~GKTTl~~~l~~   52 (221)
T 2wsm_A           13 ENKRLAEKNREALRES--GTVAVNIMGAIGSGKTLLIERTIE   52 (221)
T ss_dssp             HHHHHHHHHHHHHHHH--TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred             hcHHHHHHHHHhhccc--CceEEEEEcCCCCCHHHHHHHHHH
Confidence            3445556665555432  467999999999999999988876

>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*

Probab=97.07  E-value=0.00033  Score=55.87  Aligned_cols=90  Identities=14%  Similarity=0.156  Sum_probs=52.1

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhcCcccccccC----eeEEEEcCCCC-CHHHHHHHHHHHhCCCCC--C-cccccccHHH-
Q 045087           66 SAVTILDSIGLDKTAFAAEAYSSNYMKHYFD----CHAWVQEPYTC-YADQILDIIIKFLMPSSR--L-SEIKDKNYEM-  136 (157)
Q Consensus        66 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~----~~~wv~~~~~~-~~~~~l~~i~~~l~~~~~--~-~~~~~~~~~~-  136 (157)
                      ..++|.|..|+|||+|+..+.+..  ..+.+    .++++.++... ...+++..+...=.....  . ...+...... 
T Consensus       152 Qr~~Ifgg~G~GKt~L~~~Ia~~~--~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~~~~~g~~~rtvvV~atsd~p~~~r~  229 (465)
T 3vr4_D          152 QKLPVFSGSGLPHKELAAQIARQA--TVLDSSDDFAVVFAAIGITFEEAEFFMEDFRQTGAIDRSVMFMNLANDPAIERI  229 (465)
T ss_dssp             CBCCEEECTTSCHHHHHHHHHHHC--BCSSCSSCEEEEEEEEEECHHHHHHHHHHHHHHTGGGGEEEEEEETTSCHHHHH
T ss_pred             CEEEEeCCCCcChHHHHHHHHHHH--HhccCCCceEEEEEEecCCcHHHHHHHHHHhhcCCccceEEEEECCCCCHHHHH
Confidence            457888999999999999888843  32223    56677777654 456777776543100000  0 0011111121 


Q ss_pred             ----HHHHHHHHhc---CCcEEEEeeCC
Q 045087          137 ----KKIILHEYLM---TKRYLIVIDDV  157 (157)
Q Consensus       137 ----~~~~l~~~L~---~kr~LlVlDdV  157 (157)
                          ..-.+.++++   ++.+||++||+
T Consensus       230 ~a~~~a~tiAEyfrd~~G~~VLl~~Dsl  257 (465)
T 3vr4_D          230 ATPRMALTAAEYLAYEKGMHVLVIMTDM  257 (465)
T ss_dssp             HHHHHHHHHHHHHHHTTCCEEEEEEECH
T ss_pred             HHHHHHHHHHHHHHHhcCCeEEEEEcCh
Confidence                2233455553   78999999984

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=97.07  E-value=0.0013  Score=51.94  Aligned_cols=24  Identities=21%  Similarity=0.230  Sum_probs=21.8

Q ss_pred             CceEEEEEeCCCCcHHHHHHHHhc
Q 045087           64 QLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        64 ~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ...+|.|+|++|+||||+|+.+..
T Consensus       257 ~~~lIil~G~pGSGKSTla~~L~~  280 (416)
T 3zvl_A          257 NPEVVVAVGFPGAGKSTFIQEHLV  280 (416)
T ss_dssp             SCCEEEEESCTTSSHHHHHHHHTG
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            457899999999999999999887

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=97.07  E-value=0.00019  Score=49.62  Aligned_cols=23  Identities=22%  Similarity=0.134  Sum_probs=16.6

Q ss_pred             ceEEEEEeCCCCcHHHHHHHHhc
Q 045087           65 LSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        65 ~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ..+|.|.|++|+||||+|+.+..
T Consensus         5 ~~~I~l~G~~GsGKST~a~~La~   27 (183)
T 2vli_A            5 SPIIWINGPFGVGKTHTAHTLHE   27 (183)
T ss_dssp             CCEEEEECCC----CHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            45899999999999999999876

>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A

Probab=97.06  E-value=0.0034  Score=47.81  Aligned_cols=24  Identities=21%  Similarity=0.214  Sum_probs=21.4

Q ss_pred             CceEEEEEeCCCCcHHHHHHHHhc
Q 045087           64 QLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        64 ~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ...+++|+|.+|+||||++..+..
T Consensus       104 ~~~vI~ivG~~G~GKTT~~~~LA~  127 (320)
T 1zu4_A          104 RLNIFMLVGVNGTGKTTSLAKMAN  127 (320)
T ss_dssp             SCEEEEEESSTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            467999999999999999988866

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=97.06  E-value=0.0003  Score=48.46  Aligned_cols=21  Identities=14%  Similarity=0.268  Sum_probs=19.4

Q ss_pred             EEEEEeCCCCcHHHHHHHHhc
Q 045087           67 AVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        67 vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      .|.|.|++|+||||+|+.+..
T Consensus         6 ~i~i~G~~GsGKsTla~~La~   26 (175)
T 1via_A            6 NIVFIGFMGSGKSTLARALAK   26 (175)
T ss_dssp             CEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            588999999999999999876

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=97.05  E-value=0.0049  Score=49.88  Aligned_cols=24  Identities=13%  Similarity=0.120  Sum_probs=20.2

Q ss_pred             CceEEEEEeCCCCcHHHHHHHHhc
Q 045087           64 QLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        64 ~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      +..+|.|+|.+|+||||++..+..
T Consensus       100 ~~~vI~ivG~~GvGKTTl~~kLA~  123 (504)
T 2j37_W          100 KQNVIMFVGLQGSGKTTTCSKLAY  123 (504)
T ss_dssp             --EEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            467999999999999999988874

>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}

Probab=97.05  E-value=0.0012  Score=46.84  Aligned_cols=85  Identities=13%  Similarity=0.046  Sum_probs=46.7

Q ss_pred             EEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCCCCCHHHHHHHHHHHhCCCCCCcc--cccccHHHHHHHHHHH
Q 045087           67 AVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPYTCYADQILDIIIKFLMPSSRLSE--IKDKNYEMKKIILHEY  144 (157)
Q Consensus        67 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~l~~i~~~l~~~~~~~~--~~~~~~~~~~~~l~~~  144 (157)
                      .|+|-|.-|+||||.++.+++  .+++.....++...+......+.+..++..-... +...  .-..+..+....+...
T Consensus         2 fI~~EG~DGsGKsTq~~~L~~--~L~~~g~~v~~treP~~t~~~~~ir~~l~~~~~~-~~~~~ll~~a~r~~~~~~I~~~   78 (197)
T 3hjn_A            2 FITFEGIDGSGKSTQIQLLAQ--YLEKRGKKVILKREPGGTETGEKIRKILLEEEVT-PKAELFLFLASRNLLVTEIKQY   78 (197)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH--HHHHTTCCEEEEESSCSSHHHHHHHHHHHHSCCC-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH--HHHHCCCcEEEEECCCCCcHHHHHHHHhhcccCC-hHHHHHHHHHHHHHHHHHHHHH
Confidence            477889999999999999988  5554433445555554444445555554332111 0000  0112223445566667


Q ss_pred             hcCCcEEEEee
Q 045087          145 LMTKRYLIVID  155 (157)
Q Consensus       145 L~~kr~LlVlD  155 (157)
                      |.... .+|.|
T Consensus        79 L~~g~-~Vi~D   88 (197)
T 3hjn_A           79 LSEGY-AVLLD   88 (197)
T ss_dssp             HTTTC-EEEEE
T ss_pred             HHCCC-eEEec
Confidence            76554 35555

>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*

Probab=97.05  E-value=0.0028  Score=47.70  Aligned_cols=24  Identities=21%  Similarity=0.051  Sum_probs=21.4

Q ss_pred             CceEEEEEeCCCCcHHHHHHHHhc
Q 045087           64 QLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        64 ~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ...+++++|.+|+||||++..++.
T Consensus        97 ~~~~i~i~g~~G~GKTT~~~~la~  120 (295)
T 1ls1_A           97 DRNLWFLVGLQGSGKTTTAAKLAL  120 (295)
T ss_dssp             SSEEEEEECCTTTTHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            457999999999999999998876

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=97.05  E-value=0.0069  Score=45.62  Aligned_cols=23  Identities=17%  Similarity=0.125  Sum_probs=20.7

Q ss_pred             ceEEEEEeCCCCcHHHHHHHHhc
Q 045087           65 LSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        65 ~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ..+++++|.+|+||||++..+..
T Consensus        98 ~~vi~i~G~~G~GKTT~~~~la~  120 (297)
T 1j8m_F           98 PYVIMLVGVQGTGKTTTAGKLAY  120 (297)
T ss_dssp             SEEEEEECSSCSSTTHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            57899999999999999988875

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=97.04  E-value=0.00026  Score=48.43  Aligned_cols=22  Identities=14%  Similarity=0.175  Sum_probs=19.9

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhc
Q 045087           66 SAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        66 ~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      .+|.|.|++|+||||+|+.+..
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~   24 (173)
T 1e6c_A            3 EPIFMVGARGCGMTTVGRELAR   24 (173)
T ss_dssp             CCEEEESCTTSSHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999998876

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=97.04  E-value=0.00037  Score=49.20  Aligned_cols=23  Identities=4%  Similarity=-0.223  Sum_probs=21.1

Q ss_pred             ceEEEEEeCCCCcHHHHHHHHhc
Q 045087           65 LSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        65 ~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ..+|.|.|++|+||||+|+.+..
T Consensus        10 ~~~I~l~G~~GsGKST~~~~L~~   32 (212)
T 2wwf_A           10 GKFIVFEGLDRSGKSTQSKLLVE   32 (212)
T ss_dssp             SCEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHH
Confidence            46899999999999999999977

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=97.03  E-value=0.0004  Score=48.90  Aligned_cols=23  Identities=22%  Similarity=0.133  Sum_probs=20.6

Q ss_pred             ceEEEEEeCCCCcHHHHHHHHhc
Q 045087           65 LSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        65 ~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ...|.|.|++|+||||+|+.+..
T Consensus        20 ~~~I~l~G~~GsGKST~a~~La~   42 (201)
T 2cdn_A           20 HMRVLLLGPPGAGKGTQAVKLAE   42 (201)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            45899999999999999998876

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=97.02  E-value=0.00036  Score=48.45  Aligned_cols=21  Identities=24%  Similarity=0.216  Sum_probs=19.5

Q ss_pred             EEEEEeCCCCcHHHHHHHHhc
Q 045087           67 AVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        67 vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      +|+|.|++|+||||+|+.+.+
T Consensus         2 ~I~l~G~~GsGKsT~~~~L~~   22 (195)
T 2pbr_A            2 LIAFEGIDGSGKTTQAKKLYE   22 (195)
T ss_dssp             EEEEECSTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            688999999999999999977

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=97.01  E-value=0.00041  Score=50.51  Aligned_cols=22  Identities=23%  Similarity=0.190  Sum_probs=20.4

Q ss_pred             ceEEEEEeCCCCcHHHHHHHHh
Q 045087           65 LSAVTILDSIGLDKTAFAAEAY   86 (157)
Q Consensus        65 ~~vi~I~G~gGiGKTtLa~~v~   86 (157)
                      ..+++|+|++|+|||||++.+.
T Consensus        27 ~~~i~l~G~~GsGKSTl~k~La   48 (246)
T 2bbw_A           27 LLRAVILGPPGSGKGTVCQRIA   48 (246)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHH
Confidence            4689999999999999999998

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=97.01  E-value=0.00039  Score=47.34  Aligned_cols=21  Identities=5%  Similarity=0.048  Sum_probs=19.3

Q ss_pred             EEEEEeCCCCcHHHHHHHHhc
Q 045087           67 AVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        67 vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      .|.|.|++|+||||+|+.+.+
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~   22 (168)
T 2pt5_A            2 RIYLIGFMCSGKSTVGSLLSR   22 (168)
T ss_dssp             EEEEESCTTSCHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            588999999999999998877

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=97.00  E-value=0.0004  Score=49.65  Aligned_cols=23  Identities=13%  Similarity=0.105  Sum_probs=20.6

Q ss_pred             ceEEEEEeCCCCcHHHHHHHHhc
Q 045087           65 LSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        65 ~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ...|.|.|++|+||||+|+.+..
T Consensus         4 ~~~I~l~G~~GsGKsT~a~~La~   26 (220)
T 1aky_A            4 SIRMVLIGPPGAGKGTQAPNLQE   26 (220)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            45789999999999999998876

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=96.99  E-value=0.0007  Score=49.63  Aligned_cols=25  Identities=20%  Similarity=0.080  Sum_probs=21.8

Q ss_pred             CCceEEEEEeCCCCcHHHHHHHHhc
Q 045087           63 PQLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        63 ~~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ....++.++|++|+||||+|+.+..
T Consensus        30 ~~~~~i~l~G~~GsGKSTla~~L~~   54 (253)
T 2p5t_B           30 KQPIAILLGGQSGAGKTTIHRIKQK   54 (253)
T ss_dssp             SSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHH
Confidence            3457899999999999999999876

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=96.98  E-value=0.00046  Score=48.17  Aligned_cols=21  Identities=19%  Similarity=0.295  Sum_probs=19.1

Q ss_pred             EEEEEeCCCCcHHHHHHHHhc
Q 045087           67 AVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        67 vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      .++|+|..|+|||||++.++.
T Consensus         2 ~i~l~G~nGsGKTTLl~~l~g   22 (178)
T 1ye8_A            2 KIIITGEPGVGKTTLVKKIVE   22 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            578999999999999998876

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=96.98  E-value=0.00053  Score=48.52  Aligned_cols=25  Identities=12%  Similarity=0.150  Sum_probs=22.3

Q ss_pred             CCceEEEEEeCCCCcHHHHHHHHhc
Q 045087           63 PQLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        63 ~~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ....+|+|+|+.|+||||+|+.+.+
T Consensus        10 ~~~~iIgltG~~GSGKSTva~~L~~   34 (192)
T 2grj_A           10 HHHMVIGVTGKIGTGKSTVCEILKN   34 (192)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHH
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHH
Confidence            3567999999999999999998877

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=96.97  E-value=0.00051  Score=47.42  Aligned_cols=24  Identities=17%  Similarity=0.058  Sum_probs=21.2

Q ss_pred             CceEEEEEeCCCCcHHHHHHHHhc
Q 045087           64 QLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        64 ~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ...+|.|+|+.|+||||+++.+..
T Consensus         4 ~g~~i~l~G~~GsGKST~~~~L~~   27 (179)
T 2pez_A            4 RGCTVWLTGLSGAGKTTVSMALEE   27 (179)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            346889999999999999998876

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=96.97  E-value=0.00044  Score=49.69  Aligned_cols=23  Identities=17%  Similarity=0.228  Sum_probs=20.7

Q ss_pred             ceEEEEEeCCCCcHHHHHHHHhc
Q 045087           65 LSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        65 ~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ...|.|.|++|+||||+|+.+..
T Consensus         7 ~~~I~l~G~~GsGKsT~a~~La~   29 (227)
T 1zd8_A            7 LLRAVIMGAPGSGKGTVSSRITT   29 (227)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            46799999999999999998876

>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20

Probab=96.96  E-value=0.00071  Score=48.56  Aligned_cols=37  Identities=14%  Similarity=0.176  Sum_probs=27.7

Q ss_pred             HHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087           50 RMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        50 ~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      -+..|..++.. -++...+.++|++|+||||+|.++++
T Consensus        44 f~~~l~~~~~~-iPkkn~ili~GPPGtGKTt~a~ala~   80 (212)
T 1tue_A           44 FLGALKSFLKG-TPKKNCLVFCGPANTGKSYFGMSFIH   80 (212)
T ss_dssp             HHHHHHHHHHT-CTTCSEEEEESCGGGCHHHHHHHHHH
T ss_pred             HHHHHHHHHhc-CCcccEEEEECCCCCCHHHHHHHHHH
Confidence            35666666654 23345789999999999999988877

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=96.96  E-value=0.00037  Score=49.30  Aligned_cols=22  Identities=14%  Similarity=0.295  Sum_probs=19.9

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhc
Q 045087           66 SAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        66 ~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ..++|+|++|+|||||++.+..
T Consensus         5 ~~i~lvGpsGaGKSTLl~~L~~   26 (198)
T 1lvg_A            5 RPVVLSGPSGAGKSTLLKKLFQ   26 (198)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHh
Confidence            5789999999999999998865

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=96.94  E-value=0.00049  Score=48.28  Aligned_cols=23  Identities=9%  Similarity=-0.120  Sum_probs=20.9

Q ss_pred             ceEEEEEeCCCCcHHHHHHHHhc
Q 045087           65 LSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        65 ~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ...|+|.|+.|+||||+++.+.+
T Consensus         4 ~~~I~l~G~~GsGKsT~~~~L~~   26 (204)
T 2v54_A            4 GALIVFEGLDKSGKTTQCMNIME   26 (204)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHH
Confidence            35899999999999999999987

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=96.93  E-value=0.0006  Score=49.24  Aligned_cols=25  Identities=12%  Similarity=0.149  Sum_probs=22.6

Q ss_pred             CCceEEEEEeCCCCcHHHHHHHHhc
Q 045087           63 PQLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        63 ~~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      .+.++|.|.|++|+||||.|+.+..
T Consensus        27 ~k~kiI~llGpPGsGKgTqa~~L~~   51 (217)
T 3umf_A           27 AKAKVIFVLGGPGSGKGTQCEKLVQ   51 (217)
T ss_dssp             TSCEEEEEECCTTCCHHHHHHHHHH
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHH
Confidence            4678999999999999999998877

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=96.92  E-value=0.00053  Score=48.81  Aligned_cols=24  Identities=8%  Similarity=0.245  Sum_probs=21.3

Q ss_pred             CceEEEEEeCCCCcHHHHHHHHhc
Q 045087           64 QLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        64 ~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ..++++|+|++|+|||||++.+..
T Consensus        18 ~g~~ivl~GPSGaGKsTL~~~L~~   41 (197)
T 3ney_A           18 GRKTLVLIGASGVGRSHIKNALLS   41 (197)
T ss_dssp             SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCEEEEECcCCCCHHHHHHHHHh
Confidence            356899999999999999999876

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=96.92  E-value=0.00063  Score=51.71  Aligned_cols=25  Identities=16%  Similarity=0.177  Sum_probs=22.4

Q ss_pred             CCceEEEEEeCCCCcHHHHHHHHhc
Q 045087           63 PQLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        63 ~~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ....+++|+|..|+|||||++.+..
T Consensus        88 ~~g~ivgI~G~sGsGKSTL~~~L~g  112 (312)
T 3aez_A           88 PVPFIIGVAGSVAVGKSTTARVLQA  112 (312)
T ss_dssp             CCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCchHHHHHHHHHh
Confidence            4567999999999999999998877

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=96.92  E-value=0.00026  Score=50.13  Aligned_cols=21  Identities=14%  Similarity=0.140  Sum_probs=19.3

Q ss_pred             EEEEEeCCCCcHHHHHHHHhc
Q 045087           67 AVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        67 vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      +|+|.|.+|+||||+++.+..
T Consensus         2 ~I~i~G~~GsGKsTl~~~L~~   22 (214)
T 1gtv_A            2 LIAIEGVDGAGKRTLVEKLSG   22 (214)
T ss_dssp             EEEEEEEEEEEHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            689999999999999998866

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=96.91  E-value=0.00054  Score=47.61  Aligned_cols=24  Identities=8%  Similarity=0.055  Sum_probs=21.3

Q ss_pred             CceEEEEEeCCCCcHHHHHHHHhc
Q 045087           64 QLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        64 ~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ..+++.|+|..|+|||||+..+..
T Consensus         3 ~~~~i~i~G~sGsGKTTl~~~L~~   26 (169)
T 1xjc_A            3 AMNVWQVVGYKHSGKTTLMEKWVA   26 (169)
T ss_dssp             -CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            357899999999999999999887

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=96.91  E-value=0.0006  Score=48.38  Aligned_cols=23  Identities=9%  Similarity=-0.000  Sum_probs=20.4

Q ss_pred             ceEEEEEeCCCCcHHHHHHHHhc
Q 045087           65 LSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        65 ~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ..+++|+|..|+|||||++.+..
T Consensus        20 Gei~~l~GpnGsGKSTLl~~l~g   42 (207)
T 1znw_A           20 GRVVVLSGPSAVGKSTVVRCLRE   42 (207)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHh
Confidence            45899999999999999998864

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=96.90  E-value=0.00065  Score=48.28  Aligned_cols=23  Identities=13%  Similarity=-0.009  Sum_probs=21.0

Q ss_pred             ceEEEEEeCCCCcHHHHHHHHhc
Q 045087           65 LSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        65 ~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ..+|.|.|++|+||||+++.+..
T Consensus        25 ~~~i~~~G~~GsGKsT~~~~l~~   47 (211)
T 1m7g_A           25 GLTIWLTGLSASGKSTLAVELEH   47 (211)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            56899999999999999998876

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=96.90  E-value=0.00053  Score=48.69  Aligned_cols=21  Identities=14%  Similarity=0.196  Sum_probs=18.8

Q ss_pred             EEEEEeCCCCcHHHHHHHHhc
Q 045087           67 AVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        67 vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      .|.|.|++|+||||+|+.+..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~   22 (216)
T 3fb4_A            2 NIVLMGLPGAGKGTQAEQIIE   22 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            478999999999999998865

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=96.89  E-value=0.00049  Score=49.23  Aligned_cols=23  Identities=13%  Similarity=-0.093  Sum_probs=20.5

Q ss_pred             ceEEEEEeCCCCcHHHHHHHHhc
Q 045087           65 LSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        65 ~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ...|.|.|++|+||||+|+.+..
T Consensus         5 ~~~I~l~G~~GsGKsT~~~~La~   27 (222)
T 1zak_A            5 PLKVMISGAPASGKGTQCELIKT   27 (222)
T ss_dssp             SCCEEEEESTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            45789999999999999999876

>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*

Probab=96.89  E-value=0.0015  Score=55.10  Aligned_cols=46  Identities=15%  Similarity=0.198  Sum_probs=36.2

Q ss_pred             CCccccHHHHHHHHHHHhcC-------CCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087           42 RDTVGLDDRMEELLDLLIEG-------PPQLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        42 ~~~vGr~~~~~~l~~~L~~~-------~~~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ..++|.+..++.+...+...       ......+.++|.+|+|||++|+.+.+
T Consensus       458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~  510 (758)
T 1r6b_X          458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSK  510 (758)
T ss_dssp             TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHH
T ss_pred             hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHH
Confidence            46889999998887776421       12234789999999999999999987

>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*

Probab=96.89  E-value=0.0029  Score=45.39  Aligned_cols=23  Identities=17%  Similarity=-0.058  Sum_probs=20.9

Q ss_pred             ceEEEEEeCCCCcHHHHHHHHhc
Q 045087           65 LSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        65 ~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ...|.+.|+.|+||||+++.+.+
T Consensus         6 g~~i~~eG~~gsGKsT~~~~l~~   28 (213)
T 4edh_A            6 GLFVTLEGPEGAGKSTNRDYLAE   28 (213)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHH
T ss_pred             ceEEEEEcCCCCCHHHHHHHHHH
Confidence            46889999999999999999987

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=96.89  E-value=0.00063  Score=49.91  Aligned_cols=23  Identities=13%  Similarity=0.144  Sum_probs=20.7

Q ss_pred             ceEEEEEeCCCCcHHHHHHHHhc
Q 045087           65 LSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        65 ~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ..+|+|+|+.|+||||+++.+..
T Consensus        27 g~~I~I~G~~GsGKSTl~k~La~   49 (252)
T 4e22_A           27 APVITVDGPSGAGKGTLCKALAE   49 (252)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999998873

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=96.89  E-value=0.00071  Score=50.53  Aligned_cols=24  Identities=17%  Similarity=0.149  Sum_probs=21.2

Q ss_pred             CceEEEEEeCCCCcHHHHHHHHhc
Q 045087           64 QLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        64 ~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ...+|+|+|++|+||||+|+.+..
T Consensus        74 ~~~iI~I~G~~GSGKSTva~~La~   97 (281)
T 2f6r_A           74 GLYVLGLTGISGSGKSSVAQRLKN   97 (281)
T ss_dssp             TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            457899999999999999998863

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=96.89  E-value=0.00073  Score=49.24  Aligned_cols=24  Identities=4%  Similarity=0.043  Sum_probs=21.5

Q ss_pred             CceEEEEEeCCCCcHHHHHHHHhc
Q 045087           64 QLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        64 ~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ...+++|.|..|.|||||++.+..
T Consensus        24 ~g~iigI~G~~GsGKSTl~k~L~~   47 (245)
T 2jeo_A           24 RPFLIGVSGGTASGKSTVCEKIME   47 (245)
T ss_dssp             CSEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            456999999999999999998866

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=96.89  E-value=0.0018  Score=48.96  Aligned_cols=25  Identities=16%  Similarity=0.117  Sum_probs=22.2

Q ss_pred             CCceEEEEEeCCCCcHHHHHHHHhc
Q 045087           63 PQLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        63 ~~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ....+++|+|..|.|||||++.+..
T Consensus        78 ~~g~iigI~G~~GsGKSTl~~~L~~  102 (308)
T 1sq5_A           78 RIPYIISIAGSVAVGKSTTARVLQA  102 (308)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHH
Confidence            3457999999999999999998877

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=96.87  E-value=0.00059  Score=48.52  Aligned_cols=21  Identities=10%  Similarity=0.118  Sum_probs=18.8

Q ss_pred             EEEEEeCCCCcHHHHHHHHhc
Q 045087           67 AVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        67 vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      .|.|.|++|+||||+|+.+..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~   22 (216)
T 3dl0_A            2 NLVLMGLPGAGKGTQGERIVE   22 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            478999999999999998865

>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}

Probab=96.85  E-value=0.0017  Score=52.48  Aligned_cols=89  Identities=17%  Similarity=0.094  Sum_probs=50.8

Q ss_pred             ceEEEEEeCCCCcHHHHH-HHHhcCcccccccC-eeEEEEcCCCC-CHHHHHHHHHHHhCCCCCC---cccccccHHHH-
Q 045087           65 LSAVTILDSIGLDKTAFA-AEAYSSNYMKHYFD-CHAWVQEPYTC-YADQILDIIIKFLMPSSRL---SEIKDKNYEMK-  137 (157)
Q Consensus        65 ~~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~F~-~~~wv~~~~~~-~~~~~l~~i~~~l~~~~~~---~~~~~~~~~~~-  137 (157)
                      ...++|.|.+|+|||+|| ..+.+.  .  .-+ .++++.+++.. ...++++.+...=......   ...+....... 
T Consensus       175 GQR~~I~g~~g~GKT~Lal~~I~~~--~--~~dv~~V~~~IGeR~~Ev~e~~~~~~~~g~m~rtvvV~atad~p~~~r~~  250 (515)
T 2r9v_A          175 GQRELIIGDRQTGKTAIAIDTIINQ--K--GQGVYCIYVAIGQKKSAIARIIDKLRQYGAMEYTTVVVASASDPASLQYI  250 (515)
T ss_dssp             TCBEEEEEETTSSHHHHHHHHHHTT--T--TTTEEEEEEEESCCHHHHHHHHHHHHHTTGGGGEEEEEECTTSCHHHHHH
T ss_pred             CCEEEEEcCCCCCccHHHHHHHHHh--h--cCCcEEEEEEcCCCcHHHHHHHHHHHhCCCcceeEEEEECCCCCHHHHHH
Confidence            346889999999999996 577773  2  234 35677777765 3556777665421110000   00111111211 


Q ss_pred             ----HHHHHHHh--cCCcEEEEeeCC
Q 045087          138 ----KIILHEYL--MTKRYLIVIDDV  157 (157)
Q Consensus       138 ----~~~l~~~L--~~kr~LlVlDdV  157 (157)
                          ...+.+++  +++.+||++||+
T Consensus       251 a~~~a~tiAEyfrd~G~dVLli~Dsl  276 (515)
T 2r9v_A          251 APYAGCAMGEYFAYSGRDALVVYDDL  276 (515)
T ss_dssp             HHHHHHHHHHHHHTTTCEEEEEEETH
T ss_pred             HHHHHHHHHHHHHHcCCcEEEEeccH
Confidence                22334444  578999999984

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=96.85  E-value=0.00055  Score=49.17  Aligned_cols=23  Identities=13%  Similarity=0.249  Sum_probs=20.6

Q ss_pred             ceEEEEEeCCCCcHHHHHHHHhc
Q 045087           65 LSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        65 ~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ..+++|+|+.|+|||||++.+..
T Consensus        23 G~~~~lvGpsGsGKSTLl~~L~g   45 (218)
T 1z6g_A           23 IYPLVICGPSGVGKGTLIKKLLN   45 (218)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHh
Confidence            45899999999999999998876

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=96.84  E-value=0.00057  Score=48.83  Aligned_cols=23  Identities=9%  Similarity=0.021  Sum_probs=20.3

Q ss_pred             ceEEEEEeCCCCcHHHHHHHHhc
Q 045087           65 LSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        65 ~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ...|.|.|++|+||||+|+.+..
T Consensus         5 ~~~I~l~G~~GsGKsT~a~~La~   27 (217)
T 3be4_A            5 KHNLILIGAPGSGKGTQCEFIKK   27 (217)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            35788999999999999998876

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=96.84  E-value=0.00079  Score=47.95  Aligned_cols=23  Identities=22%  Similarity=0.193  Sum_probs=20.5

Q ss_pred             ceEEEEEeCCCCcHHHHHHHHhc
Q 045087           65 LSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        65 ~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ..+|+|.|+.|+||||+++.+..
T Consensus         4 ~~~I~i~G~~GSGKST~~~~L~~   26 (218)
T 1vht_A            4 RYIVALTGGIGSGKSTVANAFAD   26 (218)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999998865

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=96.81  E-value=0.00078  Score=48.60  Aligned_cols=23  Identities=9%  Similarity=0.070  Sum_probs=21.1

Q ss_pred             ceEEEEEeCCCCcHHHHHHHHhc
Q 045087           65 LSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        65 ~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ..+++|+|+.|+|||||.+.+..
T Consensus        16 G~ii~l~GpsGsGKSTLlk~L~g   38 (219)
T 1s96_A           16 GTLYIVSAPSGAGKSSLIQALLK   38 (219)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHhc
Confidence            46899999999999999999877

>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}

Probab=96.80  E-value=0.00085  Score=51.05  Aligned_cols=24  Identities=8%  Similarity=0.158  Sum_probs=20.5

Q ss_pred             CceEEEEEeCCCCcHHHHHHHHhc
Q 045087           64 QLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        64 ~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      +.++|+|+|-|||||||.+.-+..
T Consensus        47 ~aKVIAIaGKGGVGKTTtavNLA~   70 (314)
T 3fwy_A           47 GAKVFAVYGKGGIGKSTTSSNLSA   70 (314)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CceEEEEECCCccCHHHHHHHHHH
Confidence            578999999999999998865544

>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*

Probab=96.78  E-value=0.0018  Score=52.29  Aligned_cols=87  Identities=13%  Similarity=-0.002  Sum_probs=49.5

Q ss_pred             ceEEEEEeCCCCcHHHHH-HHHhcCcccccccC-eeEEEEcCCCCC-HHHHHHHHHHHhCC--------CCCCcccc---
Q 045087           65 LSAVTILDSIGLDKTAFA-AEAYSSNYMKHYFD-CHAWVQEPYTCY-ADQILDIIIKFLMP--------SSRLSEIK---  130 (157)
Q Consensus        65 ~~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~F~-~~~wv~~~~~~~-~~~~l~~i~~~l~~--------~~~~~~~~---  130 (157)
                      ...++|.|.+|+|||+|| ..+.+.  ..  -+ .++++.+++..+ ..+++..+...=..        ..+.+...   
T Consensus       163 GQR~~Ifg~~g~GKT~Lal~~I~~~--~~--~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~rtvvV~atad~p~~~r~~  238 (507)
T 1fx0_A          163 GQRELIIGDRQTGKTAVATDTILNQ--QG--QNVICVYVAIGQKASSVAQVVTNFQERGAMEYTIVVAETADSPATLQYL  238 (507)
T ss_dssp             TCBCBEEESSSSSHHHHHHHHHHTC--CT--TTCEEEEEEESCCHHHHHHHHHHTGGGTGGGSEEEEEECTTSCGGGTTH
T ss_pred             CCEEEEecCCCCCccHHHHHHHHHh--hc--CCcEEEEEEcCCCchHHHHHHHHHHhcCccccceEEEECCCCCHHHHHH
Confidence            456889999999999996 577773  22  34 356777777543 45565555432100        01100000   


Q ss_pred             -cccHHHHHHHHHHHhcCCcEEEEeeCC
Q 045087          131 -DKNYEMKKIILHEYLMTKRYLIVIDDV  157 (157)
Q Consensus       131 -~~~~~~~~~~l~~~L~~kr~LlVlDdV  157 (157)
                       ...--.+.+.++.  +++.+||++||+
T Consensus       239 a~~~a~tiAEyfrd--~G~dVLli~Dsl  264 (507)
T 1fx0_A          239 APYTGAALAEYFMY--RERHTLIIYDDL  264 (507)
T ss_dssp             HHHHHHHHHHHHHH--TTCEEEEEEECH
T ss_pred             HHHHHHHHHHHHHH--cCCcEEEEEecH
Confidence             0111223334443  589999999984

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=96.78  E-value=0.002  Score=46.64  Aligned_cols=24  Identities=25%  Similarity=0.259  Sum_probs=21.8

Q ss_pred             CceEEEEEeCCCCcHHHHHHHHhc
Q 045087           64 QLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        64 ~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ....|.|.|++|+||||+++.+..
T Consensus        25 ~g~~i~i~G~~GsGKsT~~~~l~~   48 (229)
T 4eaq_A           25 MSAFITFEGPEGSGKTTVINEVYH   48 (229)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHH
Confidence            457899999999999999999988

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=96.77  E-value=0.0035  Score=46.73  Aligned_cols=24  Identities=13%  Similarity=0.235  Sum_probs=21.4

Q ss_pred             CceEEEEEeCCCCcHHHHHHHHhc
Q 045087           64 QLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        64 ~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ...+++|+|.+|+|||||+..++.
T Consensus        34 ~G~~~~i~G~~G~GKTTl~~~ia~   57 (296)
T 1cr0_A           34 GGEVIMVTSGSGMGKSTFVRQQAL   57 (296)
T ss_dssp             TTCEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCeEEEEEeCCCCCHHHHHHHHHH
Confidence            456999999999999999998877

>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20

Probab=96.76  E-value=0.0022  Score=54.91  Aligned_cols=45  Identities=20%  Similarity=0.335  Sum_probs=35.8

Q ss_pred             CccccHHHHHHHHHHHhcC-------CCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087           43 DTVGLDDRMEELLDLLIEG-------PPQLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        43 ~~vGr~~~~~~l~~~L~~~-------~~~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      .++|.+..++.+...+...       ......+.++|.+|+|||++|+.+++
T Consensus       559 ~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~  610 (854)
T 1qvr_A          559 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAA  610 (854)
T ss_dssp             HSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHH
T ss_pred             ccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHH
Confidence            5799999988888777531       11235789999999999999999987

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=96.76  E-value=0.00081  Score=47.21  Aligned_cols=21  Identities=24%  Similarity=0.151  Sum_probs=19.7

Q ss_pred             EEEEEeCCCCcHHHHHHHHhc
Q 045087           67 AVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        67 vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      +|+|.|+.|+||||+|+.+..
T Consensus         4 ~i~i~G~~GsGKst~~~~la~   24 (208)
T 3ake_A            4 IVTIDGPSASGKSSVARRVAA   24 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            899999999999999998876

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=96.75  E-value=0.0017  Score=47.27  Aligned_cols=23  Identities=17%  Similarity=0.096  Sum_probs=20.9

Q ss_pred             ceEEEEEeCCCCcHHHHHHHHhc
Q 045087           65 LSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        65 ~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ..+++|+|..|.|||||.+.+..
T Consensus        31 Ge~~~iiG~nGsGKSTLl~~l~G   53 (235)
T 3tif_A           31 GEFVSIMGPSGSGKSTMLNIIGC   53 (235)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTT
T ss_pred             CCEEEEECCCCCcHHHHHHHHhc
Confidence            45899999999999999999976

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=96.75  E-value=0.001  Score=50.32  Aligned_cols=24  Identities=21%  Similarity=0.145  Sum_probs=21.4

Q ss_pred             CceEEEEEeCCCCcHHHHHHHHhc
Q 045087           64 QLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        64 ~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ...+++|+|.+|+||||++..+..
T Consensus       101 ~g~vi~lvG~nGsGKTTll~~Lag  124 (304)
T 1rj9_A          101 KGRVVLVVGVNGVGKTTTIAKLGR  124 (304)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHH
Confidence            456999999999999999998875

>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*

Probab=96.74  E-value=0.0053  Score=56.11  Aligned_cols=88  Identities=15%  Similarity=-0.002  Sum_probs=61.5

Q ss_pred             CCceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCCCCCHHHHHHHHHHHhCCCCCCcc-cccccHHHHHHHH
Q 045087           63 PQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPYTCYADQILDIIIKFLMPSSRLSE-IKDKNYEMKKIIL  141 (157)
Q Consensus        63 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~l~~i~~~l~~~~~~~~-~~~~~~~~~~~~l  141 (157)
                      ++-++|-|+|+.|+||||||.++..  +.++.=..++|+.....+++.-     +..++.+.+.-. ....+.++-++.+
T Consensus      1429 prg~~iei~g~~~sGkttl~~~~~a--~~~~~g~~~~~i~~e~~~~~~~-----~~~~Gv~~~~l~~~~p~~~e~~l~~~ 1501 (1706)
T 3cmw_A         1429 PMGRIVEIYGPESSGKTTLTLQVIA--AAQREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEIC 1501 (1706)
T ss_dssp             ETTSEEEEECSTTSSHHHHHHHHHH--HHHHTTCCEEEECTTSCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHH
T ss_pred             CCCCEEEEEcCCCCCHHHHHHHHHH--HHHhcCCeEEEEecCCCCCHHH-----HHHcCCCHHHeEEeCCCcHHHHHHHH
Confidence            4568999999999999999998887  5566667788998887777553     566665432100 1223346667777


Q ss_pred             HHHhc-CCcEEEEeeCC
Q 045087          142 HEYLM-TKRYLIVIDDV  157 (157)
Q Consensus       142 ~~~L~-~kr~LlVlDdV  157 (157)
                      ...++ +..-++|+|.|
T Consensus      1502 ~~~~~s~~~~~vvvDsv 1518 (1706)
T 3cmw_A         1502 DALARSGAVDVIVVDSV 1518 (1706)
T ss_dssp             HHHHHHTCCSEEEESCS
T ss_pred             HHHHHcCCCCEEEEccH
Confidence            77664 45568999975

>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A

Probab=96.73  E-value=0.0019  Score=48.06  Aligned_cols=36  Identities=11%  Similarity=0.047  Sum_probs=27.1

Q ss_pred             HHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087           52 EELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        52 ~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      .-+..||....++...+.++|++|.|||.+|.++.+
T Consensus        91 ~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~  126 (267)
T 1u0j_A           91 SVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAH  126 (267)
T ss_dssp             HHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred             HHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHh
Confidence            335555554424456799999999999999999886

>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*

Probab=96.73  E-value=0.001  Score=53.18  Aligned_cols=93  Identities=15%  Similarity=0.102  Sum_probs=52.7

Q ss_pred             ceEEEEEeCCCCcHHHHHHHHhcCcccccc--cCeeEEEEcCCCC-CHHHHHHHHHHHhCCCCCC---cccccccHH---
Q 045087           65 LSAVTILDSIGLDKTAFAAEAYSSNYMKHY--FDCHAWVQEPYTC-YADQILDIIIKFLMPSSRL---SEIKDKNYE---  135 (157)
Q Consensus        65 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~--F~~~~wv~~~~~~-~~~~~l~~i~~~l~~~~~~---~~~~~~~~~---  135 (157)
                      -..++|.|.+|+|||+|+..+.++....+.  =+.++++.++... ...+++..+...=......   ...+.....   
T Consensus       152 GQr~~Ifgg~G~GKt~Ll~~Ia~~~~~n~~~~~~~~V~~~iGER~~Ev~e~~~~~~~~g~m~rtvvV~~tsd~p~~~r~~  231 (469)
T 2c61_A          152 GQKLPIFSASGLPHNEIALQIARQASVPGSESAFAVVFAAMGITNEEAQYFMSDFEKTGALERAVVFLNLADDPAVERIV  231 (469)
T ss_dssp             TCBCCEEECTTSCHHHHHHHHHHHCBCTTCSSCEEEEEEEEEECHHHHHHHHHHHHHHSGGGGEEEEEEETTSCHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHhhccCCCCcEEEEEEccCCcHHHHHHHHHHHhccCccceEEEEECCCCCHHHHHH
Confidence            345778899999999999988874333211  1356677777654 4567777776431110000   001111111   


Q ss_pred             --HHHHHHHHHhc---CCcEEEEeeCC
Q 045087          136 --MKKIILHEYLM---TKRYLIVIDDV  157 (157)
Q Consensus       136 --~~~~~l~~~L~---~kr~LlVlDdV  157 (157)
                        ...-.+.++++   ++.+||++||+
T Consensus       232 ~~~~a~tiAEyfrdd~G~dVLl~~Dsl  258 (469)
T 2c61_A          232 TPRMALTAAEYLAYEHGMHVLVILTDI  258 (469)
T ss_dssp             HHHHHHHHHHHHHHHHCCEEEEEEECH
T ss_pred             HHHHHHHHHHHHHHhcCCeEEEEEeCH
Confidence              22233444554   78999999984

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=96.71  E-value=0.00062  Score=50.18  Aligned_cols=22  Identities=14%  Similarity=0.179  Sum_probs=20.3

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhc
Q 045087           66 SAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        66 ~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ..|+|+|++|+||||+++.+..
T Consensus        49 ~~i~l~G~~GsGKSTl~~~La~   70 (250)
T 3nwj_A           49 RSMYLVGMMGSGKTTVGKIMAR   70 (250)
T ss_dssp             CCEEEECSTTSCHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999999976

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=96.70  E-value=0.00097  Score=47.43  Aligned_cols=21  Identities=14%  Similarity=0.011  Sum_probs=18.9

Q ss_pred             EEEEEeCCCCcHHHHHHHHhc
Q 045087           67 AVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        67 vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      .|.|.|++|+||||+|+.+..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~   22 (214)
T 1e4v_A            2 RIILLGAPVAGKGTQAQFIME   22 (214)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            478999999999999998876

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=96.69  E-value=0.0019  Score=46.68  Aligned_cols=23  Identities=17%  Similarity=0.047  Sum_probs=20.8

Q ss_pred             ceEEEEEeCCCCcHHHHHHHHhc
Q 045087           65 LSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        65 ~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ..+++|+|..|.|||||.+.++.
T Consensus        30 Ge~~~iiG~nGsGKSTLl~~l~G   52 (224)
T 2pcj_A           30 GEFVSIIGASGSGKSTLLYILGL   52 (224)
T ss_dssp             TCEEEEEECTTSCHHHHHHHHTT
T ss_pred             CCEEEEECCCCCCHHHHHHHHhc
Confidence            45899999999999999999976

>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*

Probab=96.69  E-value=0.00093  Score=53.31  Aligned_cols=93  Identities=15%  Similarity=0.154  Sum_probs=52.3

Q ss_pred             ceEEEEEeCCCCcHHHHHHHHhcCcccc--------cccC-eeEEEEcCCCC-CHHHHHHHHHHHhCCCCCC---ccccc
Q 045087           65 LSAVTILDSIGLDKTAFAAEAYSSNYMK--------HYFD-CHAWVQEPYTC-YADQILDIIIKFLMPSSRL---SEIKD  131 (157)
Q Consensus        65 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~--------~~F~-~~~wv~~~~~~-~~~~~l~~i~~~l~~~~~~---~~~~~  131 (157)
                      -..++|.|..|+|||+|+..+.+.....        ++=+ .++++.++... ...+++..+...=......   ...+.
T Consensus       147 GQr~~Ifgg~G~GKt~L~~~Ia~~~~a~~~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~l~~~g~~~rtvvv~~t~d~  226 (464)
T 3gqb_B          147 GQKLPIFSGSGLPANEIAAQIARQATVRPDLSGEGEKEEPFAVVFAAMGITQRELSYFIQEFERTGALSRSVLFLNKADD  226 (464)
T ss_dssp             TCBCCEEEETTSCHHHHHHHHHHHCBCCHHHHCCCSTTCCEEEEEEEEEECHHHHHHHHHHHHHTSGGGGEEEEEEETTS
T ss_pred             CCEEEEecCCCCCchHHHHHHHHHHHhcccccccccCCCceEEEEEEecCchHHHHHHHHHhhhcccccceEEEEECCCC
Confidence            3457888999999999999888743331        1112 56677777654 4566666654421000000   00122


Q ss_pred             ccHHH-----HHHHHHHHhc---CCcEEEEeeCC
Q 045087          132 KNYEM-----KKIILHEYLM---TKRYLIVIDDV  157 (157)
Q Consensus       132 ~~~~~-----~~~~l~~~L~---~kr~LlVlDdV  157 (157)
                      .....     ..-.+.++++   ++.+||++||+
T Consensus       227 p~~~r~~~~~~a~tiAEyfrd~~G~~VLl~~Ddl  260 (464)
T 3gqb_B          227 PTIERILTPRMALTVAEYLAFEHDYHVLVILTDM  260 (464)
T ss_dssp             CTHHHHHHHHHHHHHHHHHHHTTCCEEEEEEETH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcCh
Confidence            22222     2233455553   78999999984

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=96.69  E-value=0.0024  Score=49.85  Aligned_cols=25  Identities=24%  Similarity=0.193  Sum_probs=22.1

Q ss_pred             CCceEEEEEeCCCCcHHHHHHHHhc
Q 045087           63 PQLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        63 ~~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ....+++|+|++|.|||||++.+..
T Consensus       167 ~~~~~i~l~G~~GsGKSTl~~~l~~  191 (377)
T 1svm_A          167 PKKRYWLFKGPIDSGKTTLAAALLE  191 (377)
T ss_dssp             TTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHh
Confidence            3456999999999999999999876

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=96.69  E-value=0.0011  Score=47.94  Aligned_cols=23  Identities=17%  Similarity=0.075  Sum_probs=20.5

Q ss_pred             ceEEEEEeCCCCcHHHHHHHHhc
Q 045087           65 LSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        65 ~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ...|.|.|++|+||||+|+.+..
T Consensus        16 ~~~I~l~G~~GsGKsT~a~~La~   38 (233)
T 1ak2_A           16 GVRAVLLGPPGAGKGTQAPKLAK   38 (233)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            45789999999999999999876

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=96.69  E-value=0.0014  Score=44.85  Aligned_cols=24  Identities=17%  Similarity=0.210  Sum_probs=21.4

Q ss_pred             CceEEEEEeCCCCcHHHHHHHHhc
Q 045087           64 QLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        64 ~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ...+++++|..|.|||||++.++.
T Consensus        32 ~Ge~v~L~G~nGaGKTTLlr~l~g   55 (158)
T 1htw_A           32 KAIMVYLNGDLGAGKTTLTRGMLQ   55 (158)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHH
Confidence            456999999999999999998876

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=96.68  E-value=0.00065  Score=48.92  Aligned_cols=22  Identities=18%  Similarity=0.140  Sum_probs=16.4

Q ss_pred             ceEEEEEeCCCCcHHHHHHHHh
Q 045087           65 LSAVTILDSIGLDKTAFAAEAY   86 (157)
Q Consensus        65 ~~vi~I~G~gGiGKTtLa~~v~   86 (157)
                      ..+++|+|+.|+|||||++.+.
T Consensus        27 G~ii~l~Gp~GsGKSTl~~~L~   48 (231)
T 3lnc_A           27 GVILVLSSPSGCGKTTVANKLL   48 (231)
T ss_dssp             CCEEEEECSCC----CHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHH
Confidence            4689999999999999999998

>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*

Probab=96.68  E-value=0.0056  Score=43.93  Aligned_cols=51  Identities=14%  Similarity=0.077  Sum_probs=32.1

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhcCccccc-ccCeeEEEEcCCCCCHHHHHHHHHH
Q 045087           66 SAVTILDSIGLDKTAFAAEAYSSNYMKH-YFDCHAWVQEPYTCYADQILDIIIK  118 (157)
Q Consensus        66 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~F~~~~wv~~~~~~~~~~~l~~i~~  118 (157)
                      ..|.+.|..|+||||+++.+.+  .+.. .+....+..-+......+.+..++.
T Consensus         4 ~~i~~eG~~gsGKsT~~~~l~~--~l~~~~~~~v~~~rep~~t~~g~~ir~~l~   55 (213)
T 4tmk_A            4 KYIVIEGLEGAGKTTARNVVVE--TLEQLGIRDMVFTREPGGTQLAEKLRSLLL   55 (213)
T ss_dssp             CEEEEEECTTSCHHHHHHHHHH--HHHHTTCCCEEEEESSCSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH--HHHHcCCCcceeeeCCCCCHHHHHHHHHHh
Confidence            5789999999999999999988  4433 2323344444333333445555543

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=96.67  E-value=0.006  Score=49.39  Aligned_cols=34  Identities=18%  Similarity=0.073  Sum_probs=25.2

Q ss_pred             HHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087           54 LLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        54 l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      |...|..+-....+++|+|.+|+|||||+..++.
T Consensus       270 ld~vL~g~i~~G~i~~i~G~~GsGKSTLl~~l~g  303 (525)
T 1tf7_A          270 LDEMCGGGFFKDSIILATGATGTGKTLLVSRFVE  303 (525)
T ss_dssp             HHHHTTSSEESSCEEEEEECTTSSHHHHHHHHHH
T ss_pred             HHHHhCCCCCCCcEEEEEeCCCCCHHHHHHHHHH
Confidence            4333433223456999999999999999999876

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=96.67  E-value=0.001  Score=49.65  Aligned_cols=22  Identities=18%  Similarity=0.273  Sum_probs=20.1

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhc
Q 045087           66 SAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        66 ~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      .+|.|.|++|+||||+|+.+..
T Consensus         3 ~~I~l~G~~GsGKST~a~~L~~   24 (301)
T 1ltq_A            3 KIILTIGCPGSGKSTWAREFIA   24 (301)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4789999999999999999876

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=96.67  E-value=0.001  Score=47.82  Aligned_cols=21  Identities=14%  Similarity=0.094  Sum_probs=19.1

Q ss_pred             EEEEEeCCCCcHHHHHHHHhc
Q 045087           67 AVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        67 vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      .|.|.|++|+||||+|+.+..
T Consensus         2 ~I~l~G~~GsGKsT~a~~La~   22 (223)
T 2xb4_A            2 NILIFGPNGSGKGTQGNLVKD   22 (223)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            578999999999999998876

>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}

Probab=96.66  E-value=0.0048  Score=48.49  Aligned_cols=50  Identities=16%  Similarity=0.001  Sum_probs=31.7

Q ss_pred             HHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhcCccccc-ccCe-eEEEEcCCC
Q 045087           54 LLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKH-YFDC-HAWVQEPYT  106 (157)
Q Consensus        54 l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~F~~-~~wv~~~~~  106 (157)
                      .++.+..- .+...++|+|.+|+|||+|+..+.+  .+.. +=++ ++++.+++.
T Consensus       165 aID~l~Pi-grGQR~lIfg~~g~GKT~Ll~~Ia~--~i~~~~~dv~~V~~lIGER  216 (427)
T 3l0o_A          165 LIDLFAPI-GKGQRGMIVAPPKAGKTTILKEIAN--GIAENHPDTIRIILLIDER  216 (427)
T ss_dssp             HHHHHSCC-BTTCEEEEEECTTCCHHHHHHHHHH--HHHHHCTTSEEEEEECSCC
T ss_pred             hhhhcccc-cCCceEEEecCCCCChhHHHHHHHH--HHhhcCCCeEEEEEEeccC
Confidence            34445432 2345789999999999999998887  3322 1122 345666654

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=96.66  E-value=0.0021  Score=47.02  Aligned_cols=22  Identities=18%  Similarity=0.240  Sum_probs=20.6

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhc
Q 045087           66 SAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        66 ~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      .+++|+|..|.|||||.+.+..
T Consensus        25 e~~~liG~nGsGKSTLl~~l~G   46 (240)
T 2onk_A           25 DYCVLLGPTGAGKSVFLELIAG   46 (240)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHT
T ss_pred             EEEEEECCCCCCHHHHHHHHhC
Confidence            6899999999999999999976

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=96.66  E-value=0.0021  Score=47.55  Aligned_cols=24  Identities=21%  Similarity=0.210  Sum_probs=21.3

Q ss_pred             CceEEEEEeCCCCcHHHHHHHHhc
Q 045087           64 QLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        64 ~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ...+++|+|..|.|||||.+.+..
T Consensus        31 ~Ge~~~liG~nGsGKSTLlk~l~G   54 (262)
T 1b0u_A           31 AGDVISIIGSSGSGKSTFLRCINF   54 (262)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHTT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhc
Confidence            346899999999999999999976

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=96.66  E-value=0.00068  Score=47.10  Aligned_cols=22  Identities=14%  Similarity=0.185  Sum_probs=20.2

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhc
Q 045087           66 SAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        66 ~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      .+++|+|.+|+|||||++.+..
T Consensus         3 ~~v~IvG~SGsGKSTL~~~L~~   24 (171)
T 2f1r_A            3 LILSIVGTSDSGKTTLITRMMP   24 (171)
T ss_dssp             CEEEEEESCHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999998877

>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A

Probab=96.65  E-value=0.0041  Score=50.14  Aligned_cols=89  Identities=13%  Similarity=0.085  Sum_probs=50.7

Q ss_pred             ceEEEEEeCCCCcHHHHH-HHHhcCcccccccC-eeEEEEcCCCCC-HHHHHHHHHHHhCCCCCC---cccccccHHHH-
Q 045087           65 LSAVTILDSIGLDKTAFA-AEAYSSNYMKHYFD-CHAWVQEPYTCY-ADQILDIIIKFLMPSSRL---SEIKDKNYEMK-  137 (157)
Q Consensus        65 ~~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~F~-~~~wv~~~~~~~-~~~~l~~i~~~l~~~~~~---~~~~~~~~~~~-  137 (157)
                      ...++|.|..|+|||+|| ..+.+.    .+-+ .++++.+++..+ ..+++..+...=......   ...+....... 
T Consensus       162 GQR~~Ifg~~g~GKT~l~l~~I~n~----~~~dv~~V~~~IGeR~~ev~e~~~~l~~~g~m~~tvvV~atad~p~~~r~~  237 (513)
T 3oaa_A          162 GQRELIIGDRQTGKTALAIDAIINQ----RDSGIKCIYVAIGQKASTISNVVRKLEEHGALANTIVVVATASESAALQYL  237 (513)
T ss_dssp             TCBCEEEESSSSSHHHHHHHHHHTT----SSSSCEEEEEEESCCHHHHHHHHHHHHHHSCSTTEEEEEECTTSCHHHHHH
T ss_pred             CCEEEeecCCCCCcchHHHHHHHhh----ccCCceEEEEEecCChHHHHHHHHHHhhcCcccceEEEEECCCCChHHHHH
Confidence            346889999999999996 566662    2233 357888887654 566777765431111100   00111111111 


Q ss_pred             ----HHHHHHHh--cCCcEEEEeeCC
Q 045087          138 ----KIILHEYL--MTKRYLIVIDDV  157 (157)
Q Consensus       138 ----~~~l~~~L--~~kr~LlVlDdV  157 (157)
                          ...+.+++  +++.+||++||+
T Consensus       238 a~~~a~tiAEyfrd~G~dVLli~Dsl  263 (513)
T 3oaa_A          238 APYAGCAMGEYFRDRGEDALIIYDDL  263 (513)
T ss_dssp             HHHHHHHHHHHHHHTTCEEEEEEETH
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEecCh
Confidence                11233333  589999999984

>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A

Probab=96.64  E-value=0.004  Score=50.85  Aligned_cols=48  Identities=10%  Similarity=-0.015  Sum_probs=35.9

Q ss_pred             ceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCCCCC-HHHHHHHH
Q 045087           65 LSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPYTCY-ADQILDII  116 (157)
Q Consensus        65 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~-~~~~l~~i  116 (157)
                      ...++|.|..|+|||+|+..+.+.    .+-+.++++.+++..+ ..+++..+
T Consensus       227 Gqr~~I~g~~g~GKT~L~~~ia~~----~~~~~~V~~~iGER~~Ev~e~~~~~  275 (588)
T 3mfy_A          227 GGTAAIPGPAGSGKTVTQHQLAKW----SDAQVVIYIGCGERGNEMTDVLEEF  275 (588)
T ss_dssp             TCEEEECSCCSHHHHHHHHHHHHH----SSCSEEEEEECCSSSSHHHHHHHHT
T ss_pred             CCeEEeecCCCCCHHHHHHHHHhc----cCCCEEEEEEecccHHHHHHHHHHH
Confidence            457899999999999999988762    2235678888887665 55666654

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=96.62  E-value=0.002  Score=48.06  Aligned_cols=23  Identities=17%  Similarity=0.192  Sum_probs=20.8

Q ss_pred             ceEEEEEeCCCCcHHHHHHHHhc
Q 045087           65 LSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        65 ~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ..+++|+|..|.|||||++.+..
T Consensus        34 Ge~~~iiGpnGsGKSTLl~~l~G   56 (275)
T 3gfo_A           34 GEVTAILGGNGVGKSTLFQNFNG   56 (275)
T ss_dssp             TSEEEEECCTTSSHHHHHHHHTT
T ss_pred             CCEEEEECCCCCCHHHHHHHHHc
Confidence            45899999999999999999976

>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*

Probab=96.62  E-value=0.0056  Score=44.64  Aligned_cols=38  Identities=16%  Similarity=0.129  Sum_probs=27.2

Q ss_pred             ceEEEEEeCCCCcHHHHHHHHhcCccccc-ccCeeEEEEcC
Q 045087           65 LSAVTILDSIGLDKTAFAAEAYSSNYMKH-YFDCHAWVQEP  104 (157)
Q Consensus        65 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~F~~~~wv~~~  104 (157)
                      ...|.|.|+.|+||||+++.+.+  .... .+.......-+
T Consensus        27 ~~~i~~eG~~GsGKsT~~~~l~~--~l~~~~~~~~~~~rep   65 (236)
T 3lv8_A           27 AKFIVIEGLEGAGKSTAIQVVVE--TLQQNGIDHITRTREP   65 (236)
T ss_dssp             CCEEEEEESTTSCHHHHHHHHHH--HHHHTTCCCEEEEESS
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH--HHHhcCCCeeeeecCC
Confidence            46899999999999999999988  4433 34434444433

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=96.60  E-value=0.0012  Score=45.90  Aligned_cols=23  Identities=13%  Similarity=0.156  Sum_probs=21.1

Q ss_pred             ceEEEEEeCCCCcHHHHHHHHhc
Q 045087           65 LSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        65 ~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      .+++.|+|.+|+|||||+..+..
T Consensus         6 ~~~i~i~G~sGsGKTTl~~~l~~   28 (174)
T 1np6_A            6 IPLLAFAAWSGTGKTTLLKKLIP   28 (174)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHH
T ss_pred             ceEEEEEeCCCCCHHHHHHHHHH
Confidence            56899999999999999999887

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=96.59  E-value=0.0024  Score=47.36  Aligned_cols=23  Identities=17%  Similarity=0.134  Sum_probs=21.0

Q ss_pred             ceEEEEEeCCCCcHHHHHHHHhc
Q 045087           65 LSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        65 ~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ..+++|+|..|.|||||++.+..
T Consensus        37 Ge~~~liG~nGsGKSTLl~~l~G   59 (266)
T 4g1u_C           37 GEMVAIIGPNGAGKSTLLRLLTG   59 (266)
T ss_dssp             TCEEEEECCTTSCHHHHHHHHTS
T ss_pred             CCEEEEECCCCCcHHHHHHHHhc
Confidence            45899999999999999999976

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=96.59  E-value=0.0027  Score=46.34  Aligned_cols=24  Identities=13%  Similarity=0.015  Sum_probs=21.4

Q ss_pred             CceEEEEEeCCCCcHHHHHHHHhc
Q 045087           64 QLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        64 ~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ...+++|+|..|.|||||.+.++.
T Consensus        27 ~Ge~~~i~G~nGsGKSTLl~~l~G   50 (243)
T 1mv5_A           27 PNSIIAFAGPSGGGKSTIFSLLER   50 (243)
T ss_dssp             TTEEEEEECCTTSSHHHHHHHHTT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhc
Confidence            356999999999999999999966

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=96.59  E-value=0.0015  Score=49.33  Aligned_cols=24  Identities=17%  Similarity=0.109  Sum_probs=21.4

Q ss_pred             CceEEEEEeCCCCcHHHHHHHHhc
Q 045087           64 QLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        64 ~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ...+++|+|..|+||||++..++.
T Consensus        99 ~g~vi~lvG~nGsGKTTll~~Lag  122 (302)
T 3b9q_A           99 KPAVIMIVGVNGGGKTTSLGKLAH  122 (302)
T ss_dssp             SCEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHH
Confidence            457999999999999999998866

>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B

Probab=96.59  E-value=0.0032  Score=50.73  Aligned_cols=89  Identities=15%  Similarity=0.097  Sum_probs=51.2

Q ss_pred             ceEEEEEeCCCCcHHHHH-HHHhcCcccccccC-eeEEEEcCCCC-CHHHHHHHHHHHhCCCCCC---cccccccHHHH-
Q 045087           65 LSAVTILDSIGLDKTAFA-AEAYSSNYMKHYFD-CHAWVQEPYTC-YADQILDIIIKFLMPSSRL---SEIKDKNYEMK-  137 (157)
Q Consensus        65 ~~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~F~-~~~wv~~~~~~-~~~~~l~~i~~~l~~~~~~---~~~~~~~~~~~-  137 (157)
                      ...++|.|.+|+|||+|| ..+.+.  .  .-+ .++++.+++.. ...+++..+...=......   ...+....... 
T Consensus       162 GQR~~Ifg~~g~GKT~Lal~~I~~~--~--~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~~tvvV~atad~p~~~r~~  237 (502)
T 2qe7_A          162 GQRELIIGDRQTGKTTIAIDTIINQ--K--GQDVICIYVAIGQKQSTVAGVVETLRQHDALDYTIVVTASASEPAPLLYL  237 (502)
T ss_dssp             TCBCEEEECSSSCHHHHHHHHHHGG--G--SCSEEEEEEEESCCHHHHHHHHHHHHHTTCSTTEEEEEECTTSCHHHHHH
T ss_pred             CCEEEEECCCCCCchHHHHHHHHHh--h--cCCcEEEEEECCCcchHHHHHHHHHhhCCCcceeEEEEECCCCCHHHHHH
Confidence            456889999999999996 577773  2  234 34677777755 3556777766532111100   00112122221 


Q ss_pred             ----HHHHHHHh--cCCcEEEEeeCC
Q 045087          138 ----KIILHEYL--MTKRYLIVIDDV  157 (157)
Q Consensus       138 ----~~~l~~~L--~~kr~LlVlDdV  157 (157)
                          .-.+.+++  +++.+||++||+
T Consensus       238 a~~~a~tiAEyfrd~G~dVLl~~Dsl  263 (502)
T 2qe7_A          238 APYAGCAMGEYFMYKGKHALVVYDDL  263 (502)
T ss_dssp             HHHHHHHHHHHHHTTTCEEEEEEECH
T ss_pred             HHHHHHHHHHHHHHcCCcEEEEEecH
Confidence                12334444  578999999984

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=96.55  E-value=0.0025  Score=46.73  Aligned_cols=23  Identities=13%  Similarity=0.124  Sum_probs=20.9

Q ss_pred             ceEEEEEeCCCCcHHHHHHHHhc
Q 045087           65 LSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        65 ~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ..+++|+|..|.|||||.+.++.
T Consensus        35 Ge~~~i~G~nGsGKSTLl~~l~G   57 (247)
T 2ff7_A           35 GEVIGIVGRSGSGKSTLTKLIQR   57 (247)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTT
T ss_pred             CCEEEEECCCCCCHHHHHHHHhc
Confidence            45899999999999999999976

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=96.55  E-value=0.0016  Score=47.40  Aligned_cols=23  Identities=13%  Similarity=0.300  Sum_probs=21.2

Q ss_pred             ceEEEEEeCCCCcHHHHHHHHhc
Q 045087           65 LSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        65 ~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ..+++|+|..|.|||||.+.++.
T Consensus        31 Ge~~~i~G~nGsGKSTLl~~l~G   53 (237)
T 2cbz_A           31 GALVAVVGQVGCGKSSLLSALLA   53 (237)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTT
T ss_pred             CCEEEEECCCCCCHHHHHHHHhc
Confidence            45899999999999999999987

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=96.55  E-value=0.0012  Score=46.61  Aligned_cols=21  Identities=24%  Similarity=0.270  Sum_probs=19.2

Q ss_pred             EEEEEeCCCCcHHHHHHHHhc
Q 045087           67 AVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        67 vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      +++|+|..|+|||||++.++.
T Consensus         3 ~i~i~G~nG~GKTTll~~l~g   23 (189)
T 2i3b_A            3 HVFLTGPPGVGKTTLIHKASE   23 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHH
T ss_pred             EEEEECCCCChHHHHHHHHHh
Confidence            689999999999999998876

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=96.54  E-value=0.0028  Score=47.13  Aligned_cols=24  Identities=17%  Similarity=0.120  Sum_probs=21.4

Q ss_pred             CceEEEEEeCCCCcHHHHHHHHhc
Q 045087           64 QLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        64 ~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ...+++|+|..|.|||||.+.++.
T Consensus        44 ~Ge~~~i~G~nGsGKSTLlk~l~G   67 (271)
T 2ixe_A           44 PGKVTALVGPNGSGKSTVAALLQN   67 (271)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhc
Confidence            346899999999999999999976

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=96.54  E-value=0.0017  Score=49.88  Aligned_cols=25  Identities=8%  Similarity=0.236  Sum_probs=22.0

Q ss_pred             CceEEEEEeCCCCcHHHHHHHHhcC
Q 045087           64 QLSAVTILDSIGLDKTAFAAEAYSS   88 (157)
Q Consensus        64 ~~~vi~I~G~gGiGKTtLa~~v~~~   88 (157)
                      +.++|.|+|+.|+||||||..++..
T Consensus        39 ~~~lIvI~GPTgsGKTtLa~~LA~~   63 (339)
T 3a8t_A           39 KEKLLVLMGATGTGKSRLSIDLAAH   63 (339)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHTT
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHH
Confidence            3468999999999999999999873

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=96.54  E-value=0.0026  Score=46.39  Aligned_cols=23  Identities=22%  Similarity=0.173  Sum_probs=20.9

Q ss_pred             ceEEEEEeCCCCcHHHHHHHHhc
Q 045087           65 LSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        65 ~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ..+++|+|..|.|||||.+.++.
T Consensus        32 Ge~~~l~G~nGsGKSTLl~~l~G   54 (240)
T 1ji0_A           32 GQIVTLIGANGAGKTTTLSAIAG   54 (240)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTT
T ss_pred             CCEEEEECCCCCCHHHHHHHHhC
Confidence            45899999999999999999976

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=96.53  E-value=0.0028  Score=46.94  Aligned_cols=24  Identities=17%  Similarity=0.183  Sum_probs=21.4

Q ss_pred             CceEEEEEeCCCCcHHHHHHHHhc
Q 045087           64 QLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        64 ~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ...+++|+|..|.|||||.+.++.
T Consensus        49 ~Gei~~liG~NGsGKSTLlk~l~G   72 (263)
T 2olj_A           49 EGEVVVVIGPSGSGKSTFLRCLNL   72 (263)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHTT
T ss_pred             CCCEEEEEcCCCCcHHHHHHHHHc
Confidence            346899999999999999999976

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=96.53  E-value=0.0014  Score=47.79  Aligned_cols=23  Identities=13%  Similarity=0.091  Sum_probs=20.7

Q ss_pred             ceEEEEEeCCCCcHHHHHHHHhc
Q 045087           65 LSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        65 ~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ..+++|.|++|+||||+|+.+..
T Consensus         9 ~~~i~i~G~~GsGKsTla~~la~   31 (233)
T 3r20_A            9 SLVVAVDGPAGTGKSSVSRGLAR   31 (233)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            35899999999999999998876

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=96.52  E-value=0.0019  Score=47.01  Aligned_cols=24  Identities=21%  Similarity=0.191  Sum_probs=20.9

Q ss_pred             CceEEEEEeCCCCcHHHHHHHHhc
Q 045087           64 QLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        64 ~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      +..++.+.|.||+||||++..+..
T Consensus        13 ~~~i~~~~GkgGvGKTTl~~~La~   36 (262)
T 1yrb_A           13 ASMIVVFVGTAGSGKTTLTGEFGR   36 (262)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             ceEEEEEeCCCCCCHHHHHHHHHH
Confidence            467888899999999999998874

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=96.51  E-value=0.0015  Score=50.23  Aligned_cols=22  Identities=18%  Similarity=0.197  Sum_probs=20.3

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhc
Q 045087           66 SAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        66 ~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      .+|+|.|++|+||||||..+..
T Consensus         8 ~lI~I~GptgSGKTtla~~La~   29 (340)
T 3d3q_A            8 FLIVIVGPTASGKTELSIEVAK   29 (340)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             ceEEEECCCcCcHHHHHHHHHH
Confidence            5899999999999999998877

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=96.50  E-value=0.003  Score=43.44  Aligned_cols=26  Identities=19%  Similarity=0.093  Sum_probs=22.4

Q ss_pred             CCceEEEEEeCCCCcHHHHHHHHhcC
Q 045087           63 PQLSAVTILDSIGLDKTAFAAEAYSS   88 (157)
Q Consensus        63 ~~~~vi~I~G~gGiGKTtLa~~v~~~   88 (157)
                      .....|.|+|.+|+|||||...+...
T Consensus        14 ~~~~ki~ivG~~~vGKSsL~~~l~~~   39 (181)
T 1fzq_A           14 DQEVRILLLGLDNAGKTTLLKQLASE   39 (181)
T ss_dssp             SSCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhcC
Confidence            34567899999999999999999874

>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}

Probab=96.50  E-value=0.00094  Score=55.06  Aligned_cols=47  Identities=19%  Similarity=0.128  Sum_probs=34.0

Q ss_pred             CCccccHHHHHHHHHHHhcCCCC---------ceEEEEEeCCCCcHHHHHHHHhcC
Q 045087           42 RDTVGLDDRMEELLDLLIEGPPQ---------LSAVTILDSIGLDKTAFAAEAYSS   88 (157)
Q Consensus        42 ~~~vGr~~~~~~l~~~L~~~~~~---------~~vi~I~G~gGiGKTtLa~~v~~~   88 (157)
                      +.++|.+.....+...|..+..+         ...+.++|.+|+|||+||+.+++.
T Consensus       295 ~~I~G~e~vk~al~~~l~~g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~  350 (595)
T 3f9v_A          295 PSIYGHWELKEALALALFGGVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRV  350 (595)
T ss_dssp             STTSCCHHHHHHHTTTTTCCCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTT
T ss_pred             chhcChHHHHHHHHHHHhCCCcccccCCCcCCCcceEEECCCchHHHHHHHHHHHh
Confidence            57899988776665544443200         115889999999999999999873

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=96.49  E-value=0.0016  Score=44.94  Aligned_cols=22  Identities=18%  Similarity=0.311  Sum_probs=19.6

Q ss_pred             EEEEEeCCCCcHHHHHHHHhcC
Q 045087           67 AVTILDSIGLDKTAFAAEAYSS   88 (157)
Q Consensus        67 vi~I~G~gGiGKTtLa~~v~~~   88 (157)
                      -|+|+|.+|+|||||...+...
T Consensus         4 kv~ivG~~gvGKStLl~~l~~~   25 (184)
T 2zej_A            4 KLMIVGNTGSGKTTLLQQLMKT   25 (184)
T ss_dssp             EEEEESCTTSSHHHHHHHHTCC
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5789999999999999998873

>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*

Probab=96.49  E-value=0.0056  Score=43.59  Aligned_cols=49  Identities=20%  Similarity=0.263  Sum_probs=30.4

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCCCCCHHHHHHHHH
Q 045087           66 SAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPYTCYADQILDIII  117 (157)
Q Consensus        66 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~l~~i~  117 (157)
                      +.|+|-|.-|+||||+++.+.+  .+.+.+.+ ++..-+......+.+..++
T Consensus         3 kFI~~EG~dGsGKsTq~~~L~~--~L~~~~~v-~~~~eP~~t~~g~~ir~~l   51 (205)
T 4hlc_A            3 AFITFEGPEGSGKTTVINEVYH--RLVKDYDV-IMTREPGGVPTGEEIRKIV   51 (205)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH--HHTTTSCE-EEEESSTTCHHHHHHHHHH
T ss_pred             CEEEEECCCCCcHHHHHHHHHH--HHHCCCCE-EEeeCCCCChHHHHHHHHH
Confidence            4788999999999999999988  44444432 2333333333334444443

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=96.48  E-value=0.0033  Score=46.41  Aligned_cols=23  Identities=13%  Similarity=0.020  Sum_probs=21.0

Q ss_pred             ceEEEEEeCCCCcHHHHHHHHhc
Q 045087           65 LSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        65 ~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ..+++|+|..|.|||||.+.++.
T Consensus        41 Gei~~l~G~NGsGKSTLlk~l~G   63 (256)
T 1vpl_A           41 GEIFGLIGPNGAGKTTTLRIIST   63 (256)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHTT
T ss_pred             CcEEEEECCCCCCHHHHHHHHhc
Confidence            45899999999999999999976

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=96.46  E-value=0.0017  Score=46.39  Aligned_cols=21  Identities=19%  Similarity=0.139  Sum_probs=18.9

Q ss_pred             EEEEEeCCCCcHHHHHHHHhc
Q 045087           67 AVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        67 vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      +|.|.|++|+||+|.|+.+..
T Consensus         2 ~Iil~GpPGsGKgTqa~~La~   22 (206)
T 3sr0_A            2 ILVFLGPPGAGKGTQAKRLAK   22 (206)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            577899999999999998876

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=96.46  E-value=0.0023  Score=43.28  Aligned_cols=23  Identities=4%  Similarity=0.137  Sum_probs=20.4

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhcC
Q 045087           66 SAVTILDSIGLDKTAFAAEAYSS   88 (157)
Q Consensus        66 ~vi~I~G~gGiGKTtLa~~v~~~   88 (157)
                      ..++|+|.+|+|||||...+...
T Consensus         4 ~~v~lvG~~gvGKStL~~~l~~~   26 (165)
T 2wji_A            4 YEIALIGNPNVGKSTIFNALTGE   26 (165)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHCC
T ss_pred             cEEEEECCCCCCHHHHHHHHhCC
Confidence            56899999999999999998763

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=96.46  E-value=0.0017  Score=49.60  Aligned_cols=22  Identities=18%  Similarity=0.226  Sum_probs=20.3

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhc
Q 045087           66 SAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        66 ~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      .+|.|+|+.|+||||||..+..
T Consensus         6 ~~i~i~GptGsGKTtla~~La~   27 (323)
T 3crm_A            6 PAIFLMGPTAAGKTDLAMALAD   27 (323)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            5899999999999999998877

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=96.45  E-value=0.0035  Score=46.45  Aligned_cols=23  Identities=9%  Similarity=0.078  Sum_probs=20.9

Q ss_pred             ceEEEEEeCCCCcHHHHHHHHhc
Q 045087           65 LSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        65 ~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ..+++|+|..|.|||||.+.++.
T Consensus        33 Ge~~~liG~nGsGKSTLl~~i~G   55 (266)
T 2yz2_A           33 GECLLVAGNTGSGKSTLLQIVAG   55 (266)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTT
T ss_pred             CCEEEEECCCCCcHHHHHHHHhC
Confidence            45899999999999999999876

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=96.45  E-value=0.0017  Score=46.77  Aligned_cols=24  Identities=29%  Similarity=0.231  Sum_probs=21.7

Q ss_pred             CceEEEEEeCCCCcHHHHHHHHhc
Q 045087           64 QLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        64 ~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ...+++|.|..|+||||+++.+..
T Consensus        19 ~g~~i~i~G~~GsGKSTl~~~L~~   42 (230)
T 2vp4_A           19 QPFTVLIEGNIGSGKTTYLNHFEK   42 (230)
T ss_dssp             CCEEEEEECSTTSCHHHHHHTTGG
T ss_pred             CceEEEEECCCCCCHHHHHHHHHh
Confidence            457999999999999999998877

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6

Probab=96.44  E-value=0.00073  Score=50.80  Aligned_cols=24  Identities=8%  Similarity=0.109  Sum_probs=18.3

Q ss_pred             CceEEEEEeCCCCcHHHHHHHHhc
Q 045087           64 QLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        64 ~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      +..+|+|.|.+|+||||+|+.+.+
T Consensus         4 ~~~iIgItG~sGSGKSTva~~L~~   27 (290)
T 1a7j_A            4 KHPIISVTGSSGAGTSTVKHTFDQ   27 (290)
T ss_dssp             TSCEEEEESCC---CCTHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHH
Confidence            356899999999999999998876

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=96.43  E-value=0.0019  Score=47.63  Aligned_cols=23  Identities=13%  Similarity=0.089  Sum_probs=20.8

Q ss_pred             ceEEEEEeCCCCcHHHHHHHHhc
Q 045087           65 LSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        65 ~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ..+++|+|..|.|||||.+.++.
T Consensus        33 Ge~~~liG~nGsGKSTLlk~l~G   55 (257)
T 1g6h_A           33 GDVTLIIGPNGSGKSTLINVITG   55 (257)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTT
T ss_pred             CCEEEEECCCCCCHHHHHHHHhC
Confidence            45899999999999999999865

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=96.43  E-value=0.0026  Score=45.67  Aligned_cols=23  Identities=17%  Similarity=0.179  Sum_probs=20.7

Q ss_pred             ceEEEEEeCCCCcHHHHHHHHhc
Q 045087           65 LSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        65 ~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ..+++|+|..|.|||||.+.++.
T Consensus        35 Ge~~~iiG~NGsGKSTLlk~l~G   57 (214)
T 1sgw_A           35 GNVVNFHGPNGIGKTTLLKTIST   57 (214)
T ss_dssp             TCCEEEECCTTSSHHHHHHHHTT
T ss_pred             CCEEEEECCCCCCHHHHHHHHhc
Confidence            35899999999999999999976

>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...

Probab=96.42  E-value=0.0037  Score=50.48  Aligned_cols=93  Identities=15%  Similarity=0.077  Sum_probs=51.4

Q ss_pred             ceEEEEEeCCCCcHHHHH-HHHhcCccc----ccccC-eeEEEEcCCCCC-HHHHHHHHHHHhCCCCCC---cccccccH
Q 045087           65 LSAVTILDSIGLDKTAFA-AEAYSSNYM----KHYFD-CHAWVQEPYTCY-ADQILDIIIKFLMPSSRL---SEIKDKNY  134 (157)
Q Consensus        65 ~~vi~I~G~gGiGKTtLa-~~v~~~~~~----~~~F~-~~~wv~~~~~~~-~~~~l~~i~~~l~~~~~~---~~~~~~~~  134 (157)
                      ...++|.|.+|+|||+|| ..+.+....    .++-+ .++++.+++..+ ..++++.+...=......   ...+....
T Consensus       162 GQR~~I~g~~g~GKT~Lal~~I~~q~~~~~~~~~~~d~~~V~~~IGeR~~Ev~~~~~~~~~~g~m~~tvvV~atad~p~~  241 (510)
T 2ck3_A          162 GQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIVVSATASDAAP  241 (510)
T ss_dssp             TCBCEEEESTTSSHHHHHHHHHHHTHHHHTSCCTTTCCEEEEEEESCCHHHHHHHHHHHHHTTCGGGEEEEEECTTSCHH
T ss_pred             CCEEEEecCCCCCchHHHHHHHHHHHhhccccccCCCeEEEEEECCCCcHHHHHHHHHHHhcCCcccceEEEECCCCCHH
Confidence            446889999999999995 566663221    01234 467788887653 556666665421110000   00111111


Q ss_pred             HHH-----HHHHHHHh--cCCcEEEEeeCC
Q 045087          135 EMK-----KIILHEYL--MTKRYLIVIDDV  157 (157)
Q Consensus       135 ~~~-----~~~l~~~L--~~kr~LlVlDdV  157 (157)
                      ...     .-.+.+++  +++.+||++||+
T Consensus       242 ~r~~a~~~a~tiAEyfrd~G~dVLli~Dsl  271 (510)
T 2ck3_A          242 LQYLAPYSGCSMGEYFRDNGKHALIIYDDL  271 (510)
T ss_dssp             HHHHHHHHHHHHHHHHHTTTCEEEEEEETH
T ss_pred             HHHHHHHHHHHHHHHHHHcCCcEEEEEcCH
Confidence            211     22233444  578999999984

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=96.42  E-value=0.0039  Score=47.76  Aligned_cols=34  Identities=21%  Similarity=0.186  Sum_probs=25.3

Q ss_pred             HHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087           54 LLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        54 l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      +.+-+...-....+++|+|.+|+|||||...+..
T Consensus        44 ~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g   77 (337)
T 2qm8_A           44 LIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGS   77 (337)
T ss_dssp             HHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHH
T ss_pred             HHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHH
Confidence            3333433334568999999999999999998863

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=96.41  E-value=0.0022  Score=44.67  Aligned_cols=24  Identities=17%  Similarity=0.283  Sum_probs=21.0

Q ss_pred             ceEEEEEeCCCCcHHHHHHHHhcC
Q 045087           65 LSAVTILDSIGLDKTAFAAEAYSS   88 (157)
Q Consensus        65 ~~vi~I~G~gGiGKTtLa~~v~~~   88 (157)
                      ...++|+|.+|+|||||.+.+...
T Consensus        29 ~~kv~lvG~~g~GKSTLl~~l~~~   52 (191)
T 1oix_A           29 LFKVVLIGDSGVGKSNLLSRFTRN   52 (191)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECcCCCCHHHHHHHHhcC
Confidence            457899999999999999998764

>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*

Probab=96.41  E-value=0.0034  Score=44.59  Aligned_cols=90  Identities=11%  Similarity=-0.045  Sum_probs=45.0

Q ss_pred             ceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCC---CCCHHHHHHHHHHHhCC-CCCCcccc-------ccc
Q 045087           65 LSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPY---TCYADQILDIIIKFLMP-SSRLSEIK-------DKN  133 (157)
Q Consensus        65 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~---~~~~~~~l~~i~~~l~~-~~~~~~~~-------~~~  133 (157)
                      ...|-|++..|.||||+|-.+.-  +.-.+=..+.++.+..   ......++..+.-.+.. ..... +.       ...
T Consensus        28 ~g~i~v~tG~GkGKTTaA~Glal--RA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~-~~~~~~~~~~~~  104 (196)
T 1g5t_A           28 RGIIIVFTGNGKGKTTAAFGTAA--RAVGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFT-WETQNREADTAA  104 (196)
T ss_dssp             CCCEEEEESSSSCHHHHHHHHHH--HHHHTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCC-CCGGGHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHH--HHHHCCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccc-cCCCCcHHHHHH
Confidence            34666777788999999966655  2222222344444332   23444555554100000 00000 01       112


Q ss_pred             HHHHHHHHHHHhcCCcE-EEEeeCC
Q 045087          134 YEMKKIILHEYLMTKRY-LIVIDDV  157 (157)
Q Consensus       134 ~~~~~~~l~~~L~~kr~-LlVlDdV  157 (157)
                      .......+++.+...+| |||||++
T Consensus       105 a~~~l~~a~~~l~~~~yDlvILDEi  129 (196)
T 1g5t_A          105 CMAVWQHGKRMLADPLLDMVVLDEL  129 (196)
T ss_dssp             HHHHHHHHHHHTTCTTCSEEEEETH
T ss_pred             HHHHHHHHHHHHhcCCCCEEEEeCC
Confidence            23445556666766665 9999974

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=96.40  E-value=0.0022  Score=47.36  Aligned_cols=23  Identities=17%  Similarity=0.273  Sum_probs=21.0

Q ss_pred             ceEEEEEeCCCCcHHHHHHHHhc
Q 045087           65 LSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        65 ~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ..+++|+|..|.|||||.+.++.
T Consensus        46 Ge~~~i~G~nGsGKSTLl~~l~G   68 (260)
T 2ghi_A           46 GTTCALVGHTGSGKSTIAKLLYR   68 (260)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTT
T ss_pred             CCEEEEECCCCCCHHHHHHHHhc
Confidence            45899999999999999999976

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=96.40  E-value=0.0021  Score=46.45  Aligned_cols=25  Identities=12%  Similarity=-0.005  Sum_probs=21.7

Q ss_pred             CCceEEEEEeCCCCcHHHHHHHHhc
Q 045087           63 PQLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        63 ~~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ....+|+|+|+.|+||||+++.+..
T Consensus        14 ~~~~~i~i~G~~gsGKst~~~~l~~   38 (236)
T 1q3t_A           14 MKTIQIAIDGPASSGKSTVAKIIAK   38 (236)
T ss_dssp             CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHH
Confidence            3456899999999999999998875

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=96.40  E-value=0.002  Score=47.27  Aligned_cols=23  Identities=9%  Similarity=0.075  Sum_probs=21.2

Q ss_pred             ceEEEEEeCCCCcHHHHHHHHhc
Q 045087           65 LSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        65 ~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ..+++|+|..|.|||||.+.++.
T Consensus        29 Ge~~~l~G~nGsGKSTLlk~l~G   51 (250)
T 2d2e_A           29 GEVHALMGPNGAGKSTLGKILAG   51 (250)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHHT
T ss_pred             CCEEEEECCCCCCHHHHHHHHhC
Confidence            45899999999999999999987

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=96.40  E-value=0.0024  Score=49.54  Aligned_cols=24  Identities=17%  Similarity=0.109  Sum_probs=21.5

Q ss_pred             CceEEEEEeCCCCcHHHHHHHHhc
Q 045087           64 QLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        64 ~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ...+++|+|..|+||||++..++.
T Consensus       156 ~g~vi~lvG~nGsGKTTll~~Lag  179 (359)
T 2og2_A          156 KPAVIMIVGVNGGGKTTSLGKLAH  179 (359)
T ss_dssp             SSEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCeEEEEEcCCCChHHHHHHHHHh
Confidence            457999999999999999998876

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=96.39  E-value=0.0021  Score=46.60  Aligned_cols=23  Identities=17%  Similarity=0.153  Sum_probs=21.1

Q ss_pred             ceEEEEEeCCCCcHHHHHHHHhc
Q 045087           65 LSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        65 ~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ..+++|+|..|.|||||.+.++.
T Consensus        34 Ge~~~i~G~nGsGKSTLl~~l~G   56 (229)
T 2pze_A           34 GQLLAVAGSTGAGKTSLLMMIMG   56 (229)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHTT
T ss_pred             CCEEEEECCCCCCHHHHHHHHhC
Confidence            45899999999999999999987

>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1

Probab=96.39  E-value=0.0023  Score=46.33  Aligned_cols=23  Identities=17%  Similarity=0.219  Sum_probs=20.8

Q ss_pred             ceEEEEEeCCCCcHHHHHHHHhc
Q 045087           65 LSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        65 ~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ...|.|.|..|+||||+++.+.+
T Consensus         2 ~~~i~~~G~~g~GKtt~~~~l~~   24 (241)
T 2ocp_A            2 PRRLSIEGNIAVGKSTFVKLLTK   24 (241)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHH
Confidence            45789999999999999999887

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=96.39  E-value=0.0035  Score=46.07  Aligned_cols=23  Identities=13%  Similarity=0.157  Sum_probs=20.8

Q ss_pred             ceEEEEEeCCCCcHHHHHHHHhc
Q 045087           65 LSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        65 ~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ..+++|+|..|.|||||.+.++.
T Consensus        26 Ge~~~liG~NGsGKSTLlk~l~G   48 (249)
T 2qi9_C           26 GEILHLVGPNGAGKSTLLARMAG   48 (249)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHTT
T ss_pred             CCEEEEECCCCCcHHHHHHHHhC
Confidence            35899999999999999999876

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=96.38  E-value=0.0026  Score=47.04  Aligned_cols=24  Identities=13%  Similarity=0.218  Sum_probs=21.3

Q ss_pred             CceEEEEEeCCCCcHHHHHHHHhc
Q 045087           64 QLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        64 ~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ...+++|+|+.|.|||||++.+..
T Consensus        24 ~g~~v~i~Gp~GsGKSTll~~l~g   47 (261)
T 2eyu_A           24 KMGLILVTGPTGSGKSTTIASMID   47 (261)
T ss_dssp             SSEEEEEECSTTCSHHHHHHHHHH
T ss_pred             CCCEEEEECCCCccHHHHHHHHHH
Confidence            356999999999999999998866

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=96.36  E-value=0.0024  Score=47.36  Aligned_cols=25  Identities=16%  Similarity=0.147  Sum_probs=22.0

Q ss_pred             CceEEEEEeCCCCcHHHHHHHHhcC
Q 045087           64 QLSAVTILDSIGLDKTAFAAEAYSS   88 (157)
Q Consensus        64 ~~~vi~I~G~gGiGKTtLa~~v~~~   88 (157)
                      ...+++|+|..|.|||||.+.++.-
T Consensus        45 ~Ge~~~l~G~NGsGKSTLlk~l~Gl   69 (267)
T 2zu0_C           45 PGEVHAIMGPNGSGKSTLSATLAGR   69 (267)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            3458999999999999999999873

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=96.36  E-value=0.0023  Score=48.80  Aligned_cols=23  Identities=17%  Similarity=0.107  Sum_probs=20.7

Q ss_pred             ceEEEEEeCCCCcHHHHHHHHhc
Q 045087           65 LSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        65 ~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      .++|.|.|+.|+||||||..++.
T Consensus         3 ~~~i~i~GptgsGKt~la~~La~   25 (322)
T 3exa_A            3 EKLVAIVGPTAVGKTKTSVMLAK   25 (322)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CcEEEEECCCcCCHHHHHHHHHH
Confidence            46889999999999999999876

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=96.36  E-value=0.0021  Score=47.58  Aligned_cols=23  Identities=13%  Similarity=0.112  Sum_probs=20.6

Q ss_pred             ceEEEEEeCCCCcHHHHHHHHhc
Q 045087           65 LSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        65 ~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ..++.|+|.+|+|||||+..+..
T Consensus        30 G~i~~i~G~~GsGKTtl~~~l~~   52 (279)
T 1nlf_A           30 GTVGALVSPGGAGKSMLALQLAA   52 (279)
T ss_dssp             TSEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHH
Confidence            45999999999999999988875

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=96.36  E-value=0.0023  Score=48.56  Aligned_cols=24  Identities=4%  Similarity=0.119  Sum_probs=21.4

Q ss_pred             CceEEEEEeCCCCcHHHHHHHHhc
Q 045087           64 QLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        64 ~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ...+++|+|..|.|||||++.+..
T Consensus       125 ~Ge~vaIvGpsGsGKSTLl~lL~g  148 (305)
T 2v9p_A          125 KKNCLAFIGPPNTGKSMLCNSLIH  148 (305)
T ss_dssp             TCSEEEEECSSSSSHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhh
Confidence            456899999999999999998876

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=96.36  E-value=0.0015  Score=46.80  Aligned_cols=22  Identities=27%  Similarity=0.143  Sum_probs=20.1

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhc
Q 045087           66 SAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        66 ~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      .+++|+|..|.|||||++.++.
T Consensus        23 e~~~liG~nGsGKSTLl~~l~G   44 (208)
T 3b85_A           23 TIVFGLGPAGSGKTYLAMAKAV   44 (208)
T ss_dssp             SEEEEECCTTSSTTHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhc
Confidence            4899999999999999998875

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=96.36  E-value=0.0065  Score=44.61  Aligned_cols=39  Identities=15%  Similarity=0.167  Sum_probs=27.9

Q ss_pred             HHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhcCc
Q 045087           51 MEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSSN   89 (157)
Q Consensus        51 ~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~   89 (157)
                      +.++.+.+.....+...|+++|.+|+|||||...+....
T Consensus        22 l~~~~~~~~~~~~~~~~I~lvG~~g~GKSSLin~l~~~~   60 (262)
T 3def_A           22 LIEFFGKLKQKDMNSMTVLVLGKGGVGKSSTVNSLIGEQ   60 (262)
T ss_dssp             HHHHHHHHHHTTCCEEEEEEEECTTSSHHHHHHHHHTSC
T ss_pred             HHHHHHHHhhccCCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            334444444443456788999999999999999987643

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=96.34  E-value=0.0029  Score=43.41  Aligned_cols=24  Identities=4%  Similarity=0.102  Sum_probs=21.2

Q ss_pred             ceEEEEEeCCCCcHHHHHHHHhcC
Q 045087           65 LSAVTILDSIGLDKTAFAAEAYSS   88 (157)
Q Consensus        65 ~~vi~I~G~gGiGKTtLa~~v~~~   88 (157)
                      ...|+++|.+|+|||||...+...
T Consensus         7 ~~~i~lvG~~gvGKStL~~~l~~~   30 (188)
T 2wjg_A            7 SYEIALIGNPNVGKSTIFNALTGE   30 (188)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHTT
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            457899999999999999999874

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=96.34  E-value=0.0026  Score=42.34  Aligned_cols=23  Identities=13%  Similarity=0.187  Sum_probs=20.2

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhcC
Q 045087           66 SAVTILDSIGLDKTAFAAEAYSS   88 (157)
Q Consensus        66 ~vi~I~G~gGiGKTtLa~~v~~~   88 (157)
                      +-|.++|.+|+|||||...+...
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~   24 (161)
T 2dyk_A            2 HKVVIVGRPNVGKSSLFNRLLKK   24 (161)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHC
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            46889999999999999988764

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=96.34  E-value=0.0061  Score=46.67  Aligned_cols=25  Identities=12%  Similarity=0.076  Sum_probs=22.0

Q ss_pred             CCceEEEEEeCCCCcHHHHHHHHhc
Q 045087           63 PQLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        63 ~~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      .+..+++|+|.+|+|||||+..+..
T Consensus        54 ~~~~~i~i~G~~g~GKSTl~~~l~~   78 (341)
T 2p67_A           54 GNTLRLGVTGTPGAGKSTFLEAFGM   78 (341)
T ss_dssp             SCSEEEEEEECTTSCHHHHHHHHHH
T ss_pred             CCCEEEEEEcCCCCCHHHHHHHHHH
Confidence            4578999999999999999988864

>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}

Probab=96.32  E-value=0.003  Score=45.41  Aligned_cols=52  Identities=21%  Similarity=0.195  Sum_probs=33.4

Q ss_pred             CCceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCCCCCHHHHHHHHH
Q 045087           63 PQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPYTCYADQILDIII  117 (157)
Q Consensus        63 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~l~~i~  117 (157)
                      ....++.|.|.+|+|||++|..++.+ .....-..++|++...  +..++...+.
T Consensus        28 ~~G~l~~i~G~pG~GKT~l~l~~~~~-~~~~~~~~v~~~s~E~--~~~~~~~~~~   79 (251)
T 2zts_A           28 PEGTTVLLTGGTGTGKTTFAAQFIYK-GAEEYGEPGVFVTLEE--RARDLRREMA   79 (251)
T ss_dssp             ETTCEEEEECCTTSSHHHHHHHHHHH-HHHHHCCCEEEEESSS--CHHHHHHHHH
T ss_pred             CCCeEEEEEeCCCCCHHHHHHHHHHH-HHHhcCCCceeecccC--CHHHHHHHHH
Confidence            34568999999999999999876542 1222234566666543  4555555543

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=96.32  E-value=0.0022  Score=44.76  Aligned_cols=24  Identities=17%  Similarity=0.283  Sum_probs=20.8

Q ss_pred             ceEEEEEeCCCCcHHHHHHHHhcC
Q 045087           65 LSAVTILDSIGLDKTAFAAEAYSS   88 (157)
Q Consensus        65 ~~vi~I~G~gGiGKTtLa~~v~~~   88 (157)
                      ...++|+|.+|+|||||.+.+...
T Consensus         5 ~~kv~lvG~~g~GKSTLl~~l~~~   28 (199)
T 2f9l_A            5 LFKVVLIGDSGVGKSNLLSRFTRN   28 (199)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred             eEEEEEECcCCCCHHHHHHHHhcC
Confidence            356889999999999999998764

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=96.31  E-value=0.0027  Score=50.08  Aligned_cols=24  Identities=17%  Similarity=0.261  Sum_probs=21.7

Q ss_pred             CceEEEEEeCCCCcHHHHHHHHhc
Q 045087           64 QLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        64 ~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ...+++|+|..|+|||||.+.+..
T Consensus        68 ~~~~valvG~nGaGKSTLln~L~G   91 (413)
T 1tq4_A           68 SVLNVAVTGETGSGKSSFINTLRG   91 (413)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHT
T ss_pred             CCeEEEEECCCCCcHHHHHHHHhC
Confidence            456999999999999999999977

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=96.31  E-value=0.0071  Score=44.53  Aligned_cols=38  Identities=16%  Similarity=0.184  Sum_probs=27.2

Q ss_pred             HHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhcC
Q 045087           51 MEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSS   88 (157)
Q Consensus        51 ~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~   88 (157)
                      +.++.+.+.........|.++|.+|+|||||...++..
T Consensus        25 l~~~~~~~~~~~~~~~~I~vvG~~g~GKSSLin~l~~~   62 (270)
T 1h65_A           25 LLELLGNLKQEDVNSLTILVMGKGGVGKSSTVNSIIGE   62 (270)
T ss_dssp             HHHHHHHHHHTTCCEEEEEEEESTTSSHHHHHHHHHTS
T ss_pred             HHHHHHHHhhcCCCCeEEEEECCCCCCHHHHHHHHhCC
Confidence            33444444444344567889999999999999998764

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=96.30  E-value=0.0024  Score=47.69  Aligned_cols=23  Identities=13%  Similarity=-0.018  Sum_probs=20.9

Q ss_pred             ceEEEEEeCCCCcHHHHHHHHhc
Q 045087           65 LSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        65 ~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ..+++|+|..|.|||||.+.++.
T Consensus        47 Ge~~~liG~NGsGKSTLlk~l~G   69 (279)
T 2ihy_A           47 GDKWILYGLNGAGKTTLLNILNA   69 (279)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHTT
T ss_pred             CCEEEEECCCCCcHHHHHHHHhC
Confidence            45899999999999999999976

>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}

Probab=96.30  E-value=0.0059  Score=44.17  Aligned_cols=24  Identities=17%  Similarity=-0.079  Sum_probs=21.8

Q ss_pred             CceEEEEEeCCCCcHHHHHHHHhc
Q 045087           64 QLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        64 ~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      +...|.+.|+.|+||||+++.+.+
T Consensus        20 ~~~~i~~~G~~g~GKst~~~~l~~   43 (223)
T 3ld9_A           20 GSMFITFEGIDGSGKTTQSHLLAE   43 (223)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            457899999999999999999988

>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...

Probab=96.29  E-value=0.0018  Score=47.58  Aligned_cols=24  Identities=17%  Similarity=0.286  Sum_probs=21.5

Q ss_pred             CceEEEEEeCCCCcHHHHHHHHhc
Q 045087           64 QLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        64 ~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      +...|+|.|..|+||||+|+.+.+
T Consensus        23 ~~~~I~ieG~~GsGKST~~~~L~~   46 (263)
T 1p5z_B           23 RIKKISIEGNIAAGKSTFVNILKQ   46 (263)
T ss_dssp             CCEEEEEECSTTSSHHHHHTTTGG
T ss_pred             CceEEEEECCCCCCHHHHHHHHHH
Confidence            457899999999999999998877

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=96.28  E-value=0.0056  Score=42.19  Aligned_cols=25  Identities=12%  Similarity=0.066  Sum_probs=21.6

Q ss_pred             CceEEEEEeCCCCcHHHHHHHHhcC
Q 045087           64 QLSAVTILDSIGLDKTAFAAEAYSS   88 (157)
Q Consensus        64 ~~~vi~I~G~gGiGKTtLa~~v~~~   88 (157)
                      ....|.|+|.+|+|||||...+...
T Consensus        47 ~~~~i~vvG~~g~GKSsll~~l~~~   71 (193)
T 2ged_A           47 YQPSIIIAGPQNSGKTSLLTLLTTD   71 (193)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcC
Confidence            4568899999999999999988764

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=96.28  E-value=0.0024  Score=42.43  Aligned_cols=22  Identities=14%  Similarity=0.324  Sum_probs=19.4

Q ss_pred             EEEEEeCCCCcHHHHHHHHhcC
Q 045087           67 AVTILDSIGLDKTAFAAEAYSS   88 (157)
Q Consensus        67 vi~I~G~gGiGKTtLa~~v~~~   88 (157)
                      -|.++|.+|+|||||...+...
T Consensus         5 ~i~v~G~~~~GKssl~~~l~~~   26 (166)
T 2ce2_X            5 KLVVVGAGGVGKSALTIQLIQN   26 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4789999999999999998764

>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*

Probab=96.26  E-value=0.0037  Score=50.64  Aligned_cols=43  Identities=12%  Similarity=0.119  Sum_probs=29.2

Q ss_pred             cccHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087           45 VGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        45 vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ..+.+-.+.|.+..........+|.+.|++|+||||+|+.+..
T Consensus       375 f~rpeV~~vLr~~~~~~~~~~~~I~l~GlsGsGKSTIa~~La~  417 (511)
T 1g8f_A          375 FSYPEVVKILRESNPPRPKQGFSIVLGNSLTVSREQLSIALLS  417 (511)
T ss_dssp             TSCHHHHHHHHHHSCCGGGCCEEEEECTTCCSCHHHHHHHHHH
T ss_pred             ccChhhHHHHHHhcccccccceEEEecccCCCCHHHHHHHHHH
Confidence            3344444445443322223457889999999999999999988

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=96.25  E-value=0.0026  Score=46.79  Aligned_cols=23  Identities=13%  Similarity=0.143  Sum_probs=20.9

Q ss_pred             ceEEEEEeCCCCcHHHHHHHHhc
Q 045087           65 LSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        65 ~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ..+++|+|..|.|||||.+.++.
T Consensus        31 Ge~~~l~G~nGsGKSTLl~~l~G   53 (253)
T 2nq2_C           31 GDILAVLGQNGCGKSTLLDLLLG   53 (253)
T ss_dssp             TCEEEEECCSSSSHHHHHHHHTT
T ss_pred             CCEEEEECCCCCCHHHHHHHHhC
Confidence            45899999999999999999977

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=96.25  E-value=0.0027  Score=42.83  Aligned_cols=24  Identities=29%  Similarity=0.331  Sum_probs=20.8

Q ss_pred             ceEEEEEeCCCCcHHHHHHHHhcC
Q 045087           65 LSAVTILDSIGLDKTAFAAEAYSS   88 (157)
Q Consensus        65 ~~vi~I~G~gGiGKTtLa~~v~~~   88 (157)
                      ..-|.|+|.+|+|||||...+...
T Consensus         4 ~~ki~i~G~~~vGKSsl~~~l~~~   27 (175)
T 2nzj_A            4 LYRVVLLGDPGVGKTSLASLFAGK   27 (175)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHCC
T ss_pred             EEEEEEECCCCccHHHHHHHHhcC
Confidence            356889999999999999998764

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=96.25  E-value=0.0045  Score=41.89  Aligned_cols=25  Identities=24%  Similarity=0.267  Sum_probs=21.5

Q ss_pred             CceEEEEEeCCCCcHHHHHHHHhcC
Q 045087           64 QLSAVTILDSIGLDKTAFAAEAYSS   88 (157)
Q Consensus        64 ~~~vi~I~G~gGiGKTtLa~~v~~~   88 (157)
                      +...|.|+|.+|+|||||...+...
T Consensus         7 ~~~~i~v~G~~~~GKssl~~~l~~~   31 (178)
T 2lkc_A            7 RPPVVTIMGHVDHGKTTLLDAIRHS   31 (178)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            4567899999999999999998764

>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}

Probab=96.24  E-value=0.0043  Score=44.98  Aligned_cols=24  Identities=17%  Similarity=-0.040  Sum_probs=18.5

Q ss_pred             CceEEEEEeCCCCcHHHHHHHHhc
Q 045087           64 QLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        64 ~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      +...|.|.|+.|+||||+++.+.+
T Consensus        24 ~g~~I~~eG~~GsGKsT~~~~l~~   47 (227)
T 3v9p_A           24 RGKFITFEGIDGAGKTTHLQWFCD   47 (227)
T ss_dssp             CCCEEEEECCC---CHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            346899999999999999999988

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=96.22  E-value=0.0049  Score=46.43  Aligned_cols=31  Identities=19%  Similarity=0.307  Sum_probs=24.7

Q ss_pred             HHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHh
Q 045087           51 MEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAY   86 (157)
Q Consensus        51 ~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~   86 (157)
                      +++|.+.+..     .+++++|.+|+|||||.+.+.
T Consensus       156 i~~L~~~l~G-----~i~~l~G~sG~GKSTLln~l~  186 (302)
T 2yv5_A          156 IDELVDYLEG-----FICILAGPSGVGKSSILSRLT  186 (302)
T ss_dssp             HHHHHHHTTT-----CEEEEECSTTSSHHHHHHHHH
T ss_pred             HHHHHhhccC-----cEEEEECCCCCCHHHHHHHHH
Confidence            5566655532     488999999999999999987

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=96.21  E-value=0.003  Score=46.95  Aligned_cols=21  Identities=14%  Similarity=0.434  Sum_probs=19.0

Q ss_pred             EEEEEeCCCCcHHHHHHHHhc
Q 045087           67 AVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        67 vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      .++|+|..|+|||||.+.++.
T Consensus         4 ~v~lvG~nGaGKSTLln~L~g   24 (270)
T 3sop_A            4 NIMVVGQSGLGKSTLVNTLFK   24 (270)
T ss_dssp             EEEEEESSSSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            578999999999999998875

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=96.20  E-value=0.0026  Score=48.29  Aligned_cols=25  Identities=12%  Similarity=0.226  Sum_probs=22.2

Q ss_pred             CceEEEEEeCCCCcHHHHHHHHhcC
Q 045087           64 QLSAVTILDSIGLDKTAFAAEAYSS   88 (157)
Q Consensus        64 ~~~vi~I~G~gGiGKTtLa~~v~~~   88 (157)
                      +.+++.|+|+.|.|||||.+.+...
T Consensus         3 ~i~v~~i~G~~GaGKTTll~~l~~~   27 (318)
T 1nij_A            3 PIAVTLLTGFLGAGKTTLLRHILNE   27 (318)
T ss_dssp             CEEEEEEEESSSSSCHHHHHHHHHS
T ss_pred             cccEEEEEecCCCCHHHHHHHHHhh
Confidence            4679999999999999999999863

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=96.20  E-value=0.003  Score=42.27  Aligned_cols=22  Identities=27%  Similarity=0.258  Sum_probs=19.3

Q ss_pred             EEEEEeCCCCcHHHHHHHHhcC
Q 045087           67 AVTILDSIGLDKTAFAAEAYSS   88 (157)
Q Consensus        67 vi~I~G~gGiGKTtLa~~v~~~   88 (157)
                      -|.++|.+|+|||||...+...
T Consensus         4 ki~~vG~~~~GKSsli~~l~~~   25 (166)
T 3q72_A            4 KVLLLGAPGVGKSALARIFGGV   25 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHCCC
T ss_pred             EEEEECCCCCCHHHHHHHHcCc
Confidence            5789999999999999998653

>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}

Probab=96.17  E-value=0.0093  Score=47.40  Aligned_cols=36  Identities=17%  Similarity=0.174  Sum_probs=25.6

Q ss_pred             HHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087           49 DRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        49 ~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ..+..+...+..+.   +.+.|.|.+|+|||+++..+..
T Consensus        32 ~av~~~~~~i~~~~---~~~li~G~aGTGKT~ll~~~~~   67 (459)
T 3upu_A           32 NAFNIVMKAIKEKK---HHVTINGPAGTGATTLTKFIIE   67 (459)
T ss_dssp             HHHHHHHHHHHSSS---CEEEEECCTTSCHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCC---CEEEEEeCCCCCHHHHHHHHHH
Confidence            33444444444432   3889999999999999988877

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=96.17  E-value=0.0027  Score=48.14  Aligned_cols=24  Identities=8%  Similarity=0.180  Sum_probs=21.5

Q ss_pred             CceEEEEEeCCCCcHHHHHHHHhc
Q 045087           64 QLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        64 ~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ...+++|+|..|.|||||++.+..
T Consensus        79 ~Ge~vaivG~sGsGKSTLl~ll~g  102 (306)
T 3nh6_A           79 PGQTLALVGPSGAGKSTILRLLFR  102 (306)
T ss_dssp             TTCEEEEESSSCHHHHHHHHHHTT
T ss_pred             CCCEEEEECCCCchHHHHHHHHHc
Confidence            356899999999999999999876

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=96.17  E-value=0.006  Score=47.25  Aligned_cols=23  Identities=17%  Similarity=0.096  Sum_probs=20.8

Q ss_pred             ceEEEEEeCCCCcHHHHHHHHhc
Q 045087           65 LSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        65 ~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ..+++|+|+.|+|||||.+.++.
T Consensus        30 Ge~~~llGpsGsGKSTLLr~iaG   52 (359)
T 3fvq_A           30 GEILFIIGASGCGKTTLLRCLAG   52 (359)
T ss_dssp             TCEEEEEESTTSSHHHHHHHHHT
T ss_pred             CCEEEEECCCCchHHHHHHHHhc
Confidence            45899999999999999999866

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=96.17  E-value=0.0033  Score=42.24  Aligned_cols=22  Identities=18%  Similarity=0.235  Sum_probs=19.1

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhc
Q 045087           66 SAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        66 ~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      --|.|+|.+|+|||||...+..
T Consensus         3 ~ki~ivG~~~~GKSsli~~l~~   24 (169)
T 3q85_A            3 FKVMLVGESGVGKSTLAGTFGG   24 (169)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHC
T ss_pred             EEEEEECCCCCCHHHHHHHHHh
Confidence            3578999999999999998864

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=96.17  E-value=0.0031  Score=50.07  Aligned_cols=23  Identities=22%  Similarity=0.195  Sum_probs=20.7

Q ss_pred             ceEEEEEeCCCCcHHHHHHHHhc
Q 045087           65 LSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        65 ~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ..+|.|+|.+|+||||++..+..
T Consensus        99 ~~vI~ivG~~GvGKTTla~~La~  121 (432)
T 2v3c_C           99 QNVILLVGIQGSGKTTTAAKLAR  121 (432)
T ss_dssp             CCCEEEECCSSSSTTHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999988876

>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A

Probab=96.15  E-value=0.017  Score=54.97  Aligned_cols=51  Identities=12%  Similarity=0.132  Sum_probs=35.0

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCCCCCHHHHHHHHHHHh
Q 045087           66 SAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPYTCYADQILDIIIKFL  120 (157)
Q Consensus        66 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~l~~i~~~l  120 (157)
                      +.+.++|++|+|||++|+.+...  . ..+ ....++++...+...+...+-..+
T Consensus      1268 ~~vLL~GPpGtGKT~la~~~l~~--~-~~~-~~~~infsa~ts~~~~~~~i~~~~ 1318 (2695)
T 4akg_A         1268 RGIILCGPPGSGKTMIMNNALRN--S-SLY-DVVGINFSKDTTTEHILSALHRHT 1318 (2695)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHS--C-SSC-EEEEEECCTTCCHHHHHHHHHHHB
T ss_pred             CeEEEECCCCCCHHHHHHHHHhc--C-CCC-ceEEEEeecCCCHHHHHHHHHHHh
Confidence            47889999999999999776662  2 122 345567777777776666555443

>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A

Probab=96.15  E-value=0.0032  Score=47.87  Aligned_cols=24  Identities=25%  Similarity=0.223  Sum_probs=21.3

Q ss_pred             CceEEEEEeCCCCcHHHHHHHHhc
Q 045087           64 QLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        64 ~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ..+++.|.|+.|+||||||..++.
T Consensus         9 ~~~~i~i~GptgsGKt~la~~La~   32 (316)
T 3foz_A            9 LPKAIFLMGPTASGKTALAIELRK   32 (316)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCcEEEEECCCccCHHHHHHHHHH
Confidence            356899999999999999999876

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=96.15  E-value=0.0035  Score=42.85  Aligned_cols=23  Identities=13%  Similarity=0.062  Sum_probs=20.4

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhcC
Q 045087           66 SAVTILDSIGLDKTAFAAEAYSS   88 (157)
Q Consensus        66 ~vi~I~G~gGiGKTtLa~~v~~~   88 (157)
                      ..|+|+|.+|+|||||...+...
T Consensus         5 ~ki~ivG~~g~GKStLl~~l~~~   27 (172)
T 2gj8_A            5 MKVVIAGRPNAGKSSLLNALAGR   27 (172)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHTS
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            46889999999999999999764

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=96.15  E-value=0.0034  Score=42.12  Aligned_cols=23  Identities=13%  Similarity=0.234  Sum_probs=20.0

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhcC
Q 045087           66 SAVTILDSIGLDKTAFAAEAYSS   88 (157)
Q Consensus        66 ~vi~I~G~gGiGKTtLa~~v~~~   88 (157)
                      --|.++|.+|+|||||...+...
T Consensus         4 ~~i~v~G~~~~GKssli~~l~~~   26 (172)
T 2erx_A            4 YRVAVFGAGGVGKSSLVLRFVKG   26 (172)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHTC
T ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Confidence            45789999999999999998764

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=96.14  E-value=0.0039  Score=41.66  Aligned_cols=24  Identities=4%  Similarity=0.094  Sum_probs=20.6

Q ss_pred             ceEEEEEeCCCCcHHHHHHHHhcC
Q 045087           65 LSAVTILDSIGLDKTAFAAEAYSS   88 (157)
Q Consensus        65 ~~vi~I~G~gGiGKTtLa~~v~~~   88 (157)
                      .--|.|+|.+|+|||||...+...
T Consensus         5 ~~~i~v~G~~~~GKssl~~~l~~~   28 (168)
T 1z2a_A            5 AIKMVVVGNGAVGKSSMIQRYCKG   28 (168)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHC
T ss_pred             eEEEEEECcCCCCHHHHHHHHHcC
Confidence            446789999999999999998764

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=96.13  E-value=0.003  Score=43.47  Aligned_cols=23  Identities=13%  Similarity=0.283  Sum_probs=20.1

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhcC
Q 045087           66 SAVTILDSIGLDKTAFAAEAYSS   88 (157)
Q Consensus        66 ~vi~I~G~gGiGKTtLa~~v~~~   88 (157)
                      .-|.++|.+|+|||||+..+...
T Consensus        22 ~ki~vvG~~~~GKSsli~~l~~~   44 (190)
T 3con_A           22 YKLVVVGAGGVGKSALTIQLIQN   44 (190)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEECcCCCCHHHHHHHHHcC
Confidence            46889999999999999998764

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=96.12  E-value=0.0034  Score=46.48  Aligned_cols=23  Identities=26%  Similarity=0.186  Sum_probs=20.8

Q ss_pred             ceEEEEEeCCCCcHHHHHHHHhc
Q 045087           65 LSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        65 ~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ..+++|+|..|.|||||.+.++.
T Consensus        30 Ge~~~i~G~NGsGKSTLlk~l~G   52 (263)
T 2pjz_A           30 GEKVIILGPNGSGKTTLLRAISG   52 (263)
T ss_dssp             SSEEEEECCTTSSHHHHHHHHTT
T ss_pred             CEEEEEECCCCCCHHHHHHHHhC
Confidence            34899999999999999999976

>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*

Probab=96.12  E-value=0.0047  Score=50.11  Aligned_cols=23  Identities=9%  Similarity=0.055  Sum_probs=20.8

Q ss_pred             ceEEEEEeCCCCcHHHHHHHHhc
Q 045087           65 LSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        65 ~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ..+|.++|++|.||||+|+.+.+
T Consensus        35 ~~lIvlvGlpGSGKSTia~~La~   57 (520)
T 2axn_A           35 PTVIVMVGLPARGKTYISKKLTR   57 (520)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            46889999999999999999876

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=96.11  E-value=0.0044  Score=42.75  Aligned_cols=25  Identities=12%  Similarity=0.266  Sum_probs=21.8

Q ss_pred             CceEEEEEeCCCCcHHHHHHHHhcC
Q 045087           64 QLSAVTILDSIGLDKTAFAAEAYSS   88 (157)
Q Consensus        64 ~~~vi~I~G~gGiGKTtLa~~v~~~   88 (157)
                      ....|.|+|.+|+|||||...+...
T Consensus        22 ~~~~i~v~G~~~~GKSsli~~l~~~   46 (195)
T 1svi_A           22 GLPEIALAGRSNVGKSSFINSLINR   46 (195)
T ss_dssp             CCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            4567899999999999999999774

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=96.10  E-value=0.0034  Score=44.81  Aligned_cols=23  Identities=26%  Similarity=0.166  Sum_probs=20.5

Q ss_pred             ceEEEEEeCCCCcHHHHHHHHhc
Q 045087           65 LSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        65 ~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ...+.|+|.+|+||||||..+..
T Consensus        34 g~~ilI~GpsGsGKStLA~~La~   56 (205)
T 2qmh_A           34 GLGVLITGDSGVGKSETALELVQ   56 (205)
T ss_dssp             TEEEEEECCCTTTTHHHHHHHHT
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            35788999999999999999876

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=96.10  E-value=0.0033  Score=41.93  Aligned_cols=23  Identities=22%  Similarity=0.278  Sum_probs=20.1

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhcC
Q 045087           66 SAVTILDSIGLDKTAFAAEAYSS   88 (157)
Q Consensus        66 ~vi~I~G~gGiGKTtLa~~v~~~   88 (157)
                      .-|.++|.+|+|||||...+...
T Consensus         5 ~~i~v~G~~~~GKssl~~~l~~~   27 (168)
T 1u8z_A            5 HKVIMVGSGGVGKSALTLQFMYD   27 (168)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHhC
Confidence            46889999999999999988764

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=96.10  E-value=0.0041  Score=46.72  Aligned_cols=24  Identities=17%  Similarity=0.167  Sum_probs=21.7

Q ss_pred             CceEEEEEeCCCCcHHHHHHHHhc
Q 045087           64 QLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        64 ~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ...+++|+|..|.|||||.+.++.
T Consensus        63 ~Ge~~~i~G~NGsGKSTLlk~l~G   86 (290)
T 2bbs_A           63 RGQLLAVAGSTGAGKTSLLMMIMG   86 (290)
T ss_dssp             TTCEEEEEESTTSSHHHHHHHHTT
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhc
Confidence            346899999999999999999987

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=96.10  E-value=0.004  Score=42.82  Aligned_cols=21  Identities=14%  Similarity=0.197  Sum_probs=18.8

Q ss_pred             eEEEEEeCCCCcHHHHHHHHh
Q 045087           66 SAVTILDSIGLDKTAFAAEAY   86 (157)
Q Consensus        66 ~vi~I~G~gGiGKTtLa~~v~   86 (157)
                      .+.+|+|..|.|||||+.+++
T Consensus        27 g~~~i~G~NGsGKStll~ai~   47 (182)
T 3kta_A           27 GFTAIVGANGSGKSNIGDAIL   47 (182)
T ss_dssp             SEEEEEECTTSSHHHHHHHHH
T ss_pred             CcEEEECCCCCCHHHHHHHHH
Confidence            388999999999999998884

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=96.10  E-value=0.0026  Score=44.56  Aligned_cols=25  Identities=8%  Similarity=-0.065  Sum_probs=21.6

Q ss_pred             CceEEEEEeCCCCcHHHHHHHHhcC
Q 045087           64 QLSAVTILDSIGLDKTAFAAEAYSS   88 (157)
Q Consensus        64 ~~~vi~I~G~gGiGKTtLa~~v~~~   88 (157)
                      ....++|+|.+|+|||||...+...
T Consensus        25 ~~~~v~lvG~~g~GKSTLl~~l~g~   49 (210)
T 1pui_A           25 TGIEVAFAGRSNAGKSSALNTLTNQ   49 (210)
T ss_dssp             CSEEEEEEECTTSSHHHHHTTTCCC
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCC
Confidence            3568999999999999999988764

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=96.09  E-value=0.0046  Score=42.45  Aligned_cols=25  Identities=8%  Similarity=0.199  Sum_probs=21.6

Q ss_pred             CceEEEEEeCCCCcHHHHHHHHhcC
Q 045087           64 QLSAVTILDSIGLDKTAFAAEAYSS   88 (157)
Q Consensus        64 ~~~vi~I~G~gGiGKTtLa~~v~~~   88 (157)
                      ....|.|+|.+|+|||||...+...
T Consensus        22 ~~~~i~v~G~~~~GKSsli~~l~~~   46 (195)
T 3pqc_A           22 LKGEVAFVGRSNVGKSSLLNALFNR   46 (195)
T ss_dssp             TTCEEEEEEBTTSSHHHHHHHHHTS
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHcC
Confidence            3457889999999999999998775

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=96.09  E-value=0.0055  Score=50.11  Aligned_cols=24  Identities=21%  Similarity=0.079  Sum_probs=21.6

Q ss_pred             CceEEEEEeCCCCcHHHHHHHHhc
Q 045087           64 QLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        64 ~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ...++.|+|+.|+|||||++.+..
T Consensus       368 ~G~iI~LiG~sGSGKSTLar~La~  391 (552)
T 3cr8_A          368 QGFTVFFTGLSGAGKSTLARALAA  391 (552)
T ss_dssp             SCEEEEEEESSCHHHHHHHHHHHH
T ss_pred             cceEEEEECCCCChHHHHHHHHHH
Confidence            346899999999999999999987

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=96.09  E-value=0.004  Score=43.93  Aligned_cols=25  Identities=12%  Similarity=0.066  Sum_probs=21.8

Q ss_pred             CceEEEEEeCCCCcHHHHHHHHhcC
Q 045087           64 QLSAVTILDSIGLDKTAFAAEAYSS   88 (157)
Q Consensus        64 ~~~vi~I~G~gGiGKTtLa~~v~~~   88 (157)
                      ....|.++|.+|+|||||...+...
T Consensus        11 ~~~~i~~~G~~g~GKTsl~~~l~~~   35 (218)
T 1nrj_B           11 YQPSIIIAGPQNSGKTSLLTLLTTD   35 (218)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcC
Confidence            4567899999999999999988774

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=96.08  E-value=0.0045  Score=47.66  Aligned_cols=24  Identities=17%  Similarity=0.041  Sum_probs=21.7

Q ss_pred             CceEEEEEeCCCCcHHHHHHHHhc
Q 045087           64 QLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        64 ~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ...+++|+|.+|+|||||...+..
T Consensus        73 ~~~~v~lvG~pgaGKSTLln~L~~   96 (349)
T 2www_A           73 LAFRVGLSGPPGAGKSTFIEYFGK   96 (349)
T ss_dssp             SCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHH
Confidence            478999999999999999998875

>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*

Probab=96.07  E-value=0.022  Score=39.63  Aligned_cols=41  Identities=15%  Similarity=-0.023  Sum_probs=26.5

Q ss_pred             eEEEEE-eCCCCcHHHHHHHHhcCcccccccCeeEEEEcCCCCC
Q 045087           66 SAVTIL-DSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPYTCY  108 (157)
Q Consensus        66 ~vi~I~-G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~  108 (157)
                      ++|+|+ +-||+||||+|..+..  .....-...+.+......+
T Consensus         2 ~vi~v~s~kgG~GKTt~a~~la~--~la~~g~~vlliD~D~~~~   43 (206)
T 4dzz_A            2 KVISFLNPKGGSGKTTAVINIAT--ALSRSGYNIAVVDTDPQMS   43 (206)
T ss_dssp             EEEEECCSSTTSSHHHHHHHHHH--HHHHTTCCEEEEECCTTCH
T ss_pred             eEEEEEeCCCCccHHHHHHHHHH--HHHHCCCeEEEEECCCCCC
Confidence            578888 7789999999988876  3333222345555544333

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=96.05  E-value=0.0036  Score=41.85  Aligned_cols=23  Identities=22%  Similarity=0.314  Sum_probs=19.8

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhcC
Q 045087           66 SAVTILDSIGLDKTAFAAEAYSS   88 (157)
Q Consensus        66 ~vi~I~G~gGiGKTtLa~~v~~~   88 (157)
                      --|.++|.+|+|||||...+...
T Consensus         4 ~ki~v~G~~~~GKssli~~l~~~   26 (167)
T 1c1y_A            4 YKLVVLGSGGVGKSALTVQFVQG   26 (167)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHC
T ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Confidence            35789999999999999998764

>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}

Probab=96.05  E-value=0.028  Score=40.40  Aligned_cols=101  Identities=15%  Similarity=0.116  Sum_probs=52.3

Q ss_pred             HHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHh-cCccccccc-CeeEEEEcCCCCCHHHHHHHHHHHhCCCCC----
Q 045087           52 EELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAY-SSNYMKHYF-DCHAWVQEPYTCYADQILDIIIKFLMPSSR----  125 (157)
Q Consensus        52 ~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~-~~~~~~~~F-~~~~wv~~~~~~~~~~~l~~i~~~l~~~~~----  125 (157)
                      +++...+..+    ..+.+.|..|.||||+..... +........ .+.+.+..+......++.+.+...++....    
T Consensus        67 ~~~i~~i~~g----~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~~~~~~~~~~~g  142 (235)
T 3llm_A           67 SEILEAISQN----SVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFERGEEPGKSCG  142 (235)
T ss_dssp             HHHHHHHHHC----SEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHHTTTCCTTSSEE
T ss_pred             HHHHHHHhcC----CEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHHHhccccCceEE
Confidence            3444444443    478999999999998665443 211111112 234444444433444555555544432210    


Q ss_pred             ------------CcccccccHHHHHHHHHHHhcCCcEEEEeeCC
Q 045087          126 ------------LSEIKDKNYEMKKIILHEYLMTKRYLIVIDDV  157 (157)
Q Consensus       126 ------------~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdV  157 (157)
                                  ...+-..+...+...+...|.+- -+||+|++
T Consensus       143 ~~~~~~~~~~~~~~~Ivv~Tpg~l~~~l~~~l~~~-~~lVlDEa  185 (235)
T 3llm_A          143 YSVRFESILPRPHASIMFCTVGVLLRKLEAGIRGI-SHVIVDEI  185 (235)
T ss_dssp             EEETTEEECCCSSSEEEEEEHHHHHHHHHHCCTTC-CEEEECCT
T ss_pred             EeechhhccCCCCCeEEEECHHHHHHHHHhhhcCC-cEEEEECC
Confidence                        01122345677777777655444 46788864

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=96.04  E-value=0.0036  Score=41.69  Aligned_cols=23  Identities=26%  Similarity=0.356  Sum_probs=19.7

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhcC
Q 045087           66 SAVTILDSIGLDKTAFAAEAYSS   88 (157)
Q Consensus        66 ~vi~I~G~gGiGKTtLa~~v~~~   88 (157)
                      --|.++|.+|+|||||...+...
T Consensus         4 ~~i~v~G~~~~GKSsli~~l~~~   26 (167)
T 1kao_A            4 YKVVVLGSGGVGKSALTVQFVTG   26 (167)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHcC
Confidence            35889999999999999888754

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=96.04  E-value=0.0037  Score=42.93  Aligned_cols=24  Identities=13%  Similarity=0.062  Sum_probs=20.6

Q ss_pred             ceEEEEEeCCCCcHHHHHHHHhcC
Q 045087           65 LSAVTILDSIGLDKTAFAAEAYSS   88 (157)
Q Consensus        65 ~~vi~I~G~gGiGKTtLa~~v~~~   88 (157)
                      ..-|.|+|.+|+|||||...+...
T Consensus         7 ~~ki~v~G~~~vGKSsli~~l~~~   30 (184)
T 1m7b_A            7 KCKIVVVGDSQCGKTALLHVFAKD   30 (184)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEEEECCCCCCHHHHHHHHhcC
Confidence            456789999999999999988764

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=96.03  E-value=0.0036  Score=41.99  Aligned_cols=24  Identities=17%  Similarity=0.101  Sum_probs=20.6

Q ss_pred             ceEEEEEeCCCCcHHHHHHHHhcC
Q 045087           65 LSAVTILDSIGLDKTAFAAEAYSS   88 (157)
Q Consensus        65 ~~vi~I~G~gGiGKTtLa~~v~~~   88 (157)
                      .--|.|+|.+|+|||||...+...
T Consensus         6 ~~~i~v~G~~~~GKssli~~l~~~   29 (170)
T 1z08_A            6 SFKVVLLGEGCVGKTSLVLRYCEN   29 (170)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHHHC
T ss_pred             ceEEEEECcCCCCHHHHHHHHHcC
Confidence            346889999999999999988764

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=96.02  E-value=0.0042  Score=42.54  Aligned_cols=22  Identities=5%  Similarity=0.084  Sum_probs=19.6

Q ss_pred             EEEEEeCCCCcHHHHHHHHhcC
Q 045087           67 AVTILDSIGLDKTAFAAEAYSS   88 (157)
Q Consensus        67 vi~I~G~gGiGKTtLa~~v~~~   88 (157)
                      -|.|+|.+|+|||||...+...
T Consensus         3 ki~v~G~~~~GKSsli~~l~~~   24 (190)
T 2cxx_A            3 TIIFAGRSNVGKSTLIYRLTGK   24 (190)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCc
Confidence            4789999999999999998775

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=96.01  E-value=0.0071  Score=45.49  Aligned_cols=33  Identities=21%  Similarity=0.275  Sum_probs=25.6

Q ss_pred             HHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhcC
Q 045087           51 MEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSS   88 (157)
Q Consensus        51 ~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~   88 (157)
                      ++++..++..     .+++++|.+|+|||||.+.+...
T Consensus       160 v~~lf~~l~g-----eiv~l~G~sG~GKSTll~~l~g~  192 (301)
T 1u0l_A          160 IEELKEYLKG-----KISTMAGLSGVGKSSLLNAINPG  192 (301)
T ss_dssp             HHHHHHHHSS-----SEEEEECSTTSSHHHHHHHHSTT
T ss_pred             HHHHHHHhcC-----CeEEEECCCCCcHHHHHHHhccc
Confidence            4555555532     48899999999999999999763

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=96.01  E-value=0.0038  Score=41.74  Aligned_cols=22  Identities=14%  Similarity=0.243  Sum_probs=19.3

Q ss_pred             EEEEEeCCCCcHHHHHHHHhcC
Q 045087           67 AVTILDSIGLDKTAFAAEAYSS   88 (157)
Q Consensus        67 vi~I~G~gGiGKTtLa~~v~~~   88 (157)
                      -|.++|.+|+|||||...+...
T Consensus         5 ~i~v~G~~~~GKssli~~l~~~   26 (170)
T 1ek0_A            5 KLVLLGEAAVGKSSIVLRFVSN   26 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5789999999999999888754

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=96.00  E-value=0.005  Score=41.65  Aligned_cols=25  Identities=16%  Similarity=0.259  Sum_probs=21.6

Q ss_pred             CceEEEEEeCCCCcHHHHHHHHhcC
Q 045087           64 QLSAVTILDSIGLDKTAFAAEAYSS   88 (157)
Q Consensus        64 ~~~vi~I~G~gGiGKTtLa~~v~~~   88 (157)
                      ...-|.|+|.+|+|||||...+...
T Consensus         8 ~~~~i~v~G~~~~GKssl~~~l~~~   32 (181)
T 3tw8_B            8 HLFKLLIIGDSGVGKSSLLLRFADN   32 (181)
T ss_dssp             EEEEEEEECCTTSCHHHHHHHHCSC
T ss_pred             cceEEEEECCCCCCHHHHHHHHhcC
Confidence            4567889999999999999999764

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=95.98  E-value=0.004  Score=41.74  Aligned_cols=23  Identities=17%  Similarity=0.232  Sum_probs=20.0

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhcC
Q 045087           66 SAVTILDSIGLDKTAFAAEAYSS   88 (157)
Q Consensus        66 ~vi~I~G~gGiGKTtLa~~v~~~   88 (157)
                      --|.++|.+|+|||||...+...
T Consensus         7 ~~i~v~G~~~~GKSsli~~l~~~   29 (170)
T 1z0j_A            7 LKVCLLGDTGVGKSSIMWRFVED   29 (170)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHS
T ss_pred             eEEEEECcCCCCHHHHHHHHHcC
Confidence            46889999999999999988764

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=95.98  E-value=0.0043  Score=47.86  Aligned_cols=23  Identities=17%  Similarity=0.193  Sum_probs=20.5

Q ss_pred             ceEEEEEeCCCCcHHHHHHHHhc
Q 045087           65 LSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        65 ~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ...++|+|..|.|||||++.+..
T Consensus       170 g~k~~IvG~nGsGKSTLlk~L~g  192 (365)
T 1lw7_A          170 AKTVAILGGESSGKSVLVNKLAA  192 (365)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHH
T ss_pred             hCeEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999998865

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=95.98  E-value=0.008  Score=46.61  Aligned_cols=23  Identities=13%  Similarity=0.104  Sum_probs=20.9

Q ss_pred             ceEEEEEeCCCCcHHHHHHHHhc
Q 045087           65 LSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        65 ~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ..+++|+|..|+|||||.+.++.
T Consensus        29 Ge~~~llGpnGsGKSTLLr~iaG   51 (362)
T 2it1_A           29 GEFMALLGPSGSGKSTLLYTIAG   51 (362)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHHT
T ss_pred             CCEEEEECCCCchHHHHHHHHhc
Confidence            45899999999999999999876

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=95.97  E-value=0.0041  Score=41.53  Aligned_cols=20  Identities=10%  Similarity=-0.007  Sum_probs=18.1

Q ss_pred             EEEEeCCCCcHHHHHHHHhc
Q 045087           68 VTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        68 i~I~G~gGiGKTtLa~~v~~   87 (157)
                      |.++|.+|+|||||...+..
T Consensus         3 i~~~G~~~~GKssl~~~l~~   22 (164)
T 1r8s_A            3 ILMVGLDAAGKTTILYKLKL   22 (164)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHc
Confidence            78999999999999988864

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=95.97  E-value=0.0081  Score=46.75  Aligned_cols=23  Identities=17%  Similarity=0.056  Sum_probs=20.8

Q ss_pred             ceEEEEEeCCCCcHHHHHHHHhc
Q 045087           65 LSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        65 ~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ..+++|+|..|+|||||.+.++.
T Consensus        37 Ge~~~llGpnGsGKSTLLr~iaG   59 (372)
T 1v43_A           37 GEFLVLLGPSGCGKTTTLRMIAG   59 (372)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHHT
T ss_pred             CCEEEEECCCCChHHHHHHHHHc
Confidence            45899999999999999999865

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=95.96  E-value=0.0064  Score=46.90  Aligned_cols=23  Identities=26%  Similarity=0.176  Sum_probs=20.9

Q ss_pred             ceEEEEEeCCCCcHHHHHHHHhc
Q 045087           65 LSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        65 ~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ..+++|+|..|+|||||.+.++.
T Consensus        26 Ge~~~llGpnGsGKSTLLr~iaG   48 (348)
T 3d31_A           26 GEYFVILGPTGAGKTLFLELIAG   48 (348)
T ss_dssp             TCEEEEECCCTHHHHHHHHHHHT
T ss_pred             CCEEEEECCCCccHHHHHHHHHc
Confidence            45899999999999999999976

>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A

Probab=95.96  E-value=0.011  Score=49.07  Aligned_cols=62  Identities=16%  Similarity=0.148  Sum_probs=39.3

Q ss_pred             HHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHH-HHHhcCcccccccCeeEEEEcCCCCCHHHHHHHHH
Q 045087           48 DDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFA-AEAYSSNYMKHYFDCHAWVQEPYTCYADQILDIII  117 (157)
Q Consensus        48 ~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~l~~i~  117 (157)
                      +.+.+.+...|...    .+..|.|+||.|||+.+ ..+++  -++.  ...+.++.......++++..+.
T Consensus       192 ~~Q~~AV~~al~~~----~~~lI~GPPGTGKT~ti~~~I~~--l~~~--~~~ILv~a~TN~AvD~i~erL~  254 (646)
T 4b3f_X          192 TSQKEAVLFALSQK----ELAIIHGPPGTGKTTTVVEIILQ--AVKQ--GLKVLCCAPSNIAVDNLVERLA  254 (646)
T ss_dssp             HHHHHHHHHHHHCS----SEEEEECCTTSCHHHHHHHHHHH--HHHT--TCCEEEEESSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCC----CceEEECCCCCCHHHHHHHHHHH--HHhC--CCeEEEEcCchHHHHHHHHHHH
Confidence            56667777666543    37789999999999554 54444  2322  2356666665555666666654

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=95.96  E-value=0.004  Score=42.19  Aligned_cols=25  Identities=24%  Similarity=0.333  Sum_probs=21.1

Q ss_pred             CceEEEEEeCCCCcHHHHHHHHhcC
Q 045087           64 QLSAVTILDSIGLDKTAFAAEAYSS   88 (157)
Q Consensus        64 ~~~vi~I~G~gGiGKTtLa~~v~~~   88 (157)
                      ...-|.|+|.+|+|||||...+...
T Consensus         7 ~~~~i~v~G~~~~GKSsli~~l~~~   31 (182)
T 1ky3_A            7 NILKVIILGDSGVGKTSLMHRYVND   31 (182)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHhC
Confidence            3557889999999999999888664

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=95.96  E-value=0.0046  Score=41.87  Aligned_cols=24  Identities=13%  Similarity=0.052  Sum_probs=20.5

Q ss_pred             ceEEEEEeCCCCcHHHHHHHHhcC
Q 045087           65 LSAVTILDSIGLDKTAFAAEAYSS   88 (157)
Q Consensus        65 ~~vi~I~G~gGiGKTtLa~~v~~~   88 (157)
                      .--|.|+|.+|+|||||...+...
T Consensus         6 ~~ki~v~G~~~~GKssl~~~l~~~   29 (178)
T 2hxs_A            6 QLKIVVLGDGASGKTSLTTCFAQE   29 (178)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHGG
T ss_pred             eEEEEEECcCCCCHHHHHHHHHhC
Confidence            456889999999999999988764

>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}

Probab=95.96  E-value=0.0034  Score=44.55  Aligned_cols=22  Identities=14%  Similarity=0.128  Sum_probs=19.6

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhc
Q 045087           66 SAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        66 ~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      .+|+|+|+.|+||||+++.+..
T Consensus         4 ~~i~i~G~~gsGkst~~~~l~~   25 (219)
T 2h92_A            4 INIALDGPAAAGKSTIAKRVAS   25 (219)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4789999999999999998865

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=95.95  E-value=0.0044  Score=41.52  Aligned_cols=23  Identities=9%  Similarity=0.244  Sum_probs=19.9

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhcC
Q 045087           66 SAVTILDSIGLDKTAFAAEAYSS   88 (157)
Q Consensus        66 ~vi~I~G~gGiGKTtLa~~v~~~   88 (157)
                      --|.|+|.+|+|||||...+...
T Consensus         4 ~~i~v~G~~~~GKssli~~l~~~   26 (170)
T 1g16_A            4 MKILLIGDSGVGKSCLLVRFVED   26 (170)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHC
T ss_pred             eEEEEECcCCCCHHHHHHHHHhC
Confidence            45889999999999999988754

>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*

Probab=95.95  E-value=0.0045  Score=48.75  Aligned_cols=22  Identities=14%  Similarity=0.318  Sum_probs=20.0

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhc
Q 045087           66 SAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        66 ~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ++|.|.|+.|+||||||..++.
T Consensus         3 ~~i~i~GptgsGKttla~~La~   24 (409)
T 3eph_A            3 KVIVIAGTTGVGKSQLSIQLAQ   24 (409)
T ss_dssp             EEEEEEECSSSSHHHHHHHHHH
T ss_pred             cEEEEECcchhhHHHHHHHHHH
Confidence            5889999999999999998876

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=95.95  E-value=0.0042  Score=41.54  Aligned_cols=23  Identities=9%  Similarity=0.154  Sum_probs=19.8

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhcC
Q 045087           66 SAVTILDSIGLDKTAFAAEAYSS   88 (157)
Q Consensus        66 ~vi~I~G~gGiGKTtLa~~v~~~   88 (157)
                      --|.++|.+|+|||||...+...
T Consensus         7 ~~i~v~G~~~~GKssli~~l~~~   29 (170)
T 1r2q_A            7 FKLVLLGESAVGKSSLVLRFVKG   29 (170)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHcC
Confidence            46789999999999999988753

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=95.95  E-value=0.0075  Score=46.92  Aligned_cols=23  Identities=17%  Similarity=0.044  Sum_probs=20.7

Q ss_pred             ceEEEEEeCCCCcHHHHHHHHhc
Q 045087           65 LSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        65 ~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ..+++|+|..|+|||||.+.++.
T Consensus        29 Ge~~~llGpnGsGKSTLLr~iaG   51 (372)
T 1g29_1           29 GEFMILLGPSGCGKTTTLRMIAG   51 (372)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHHT
T ss_pred             CCEEEEECCCCcHHHHHHHHHHc
Confidence            45899999999999999999875

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=95.94  E-value=0.0042  Score=42.02  Aligned_cols=24  Identities=21%  Similarity=0.297  Sum_probs=20.6

Q ss_pred             ceEEEEEeCCCCcHHHHHHHHhcC
Q 045087           65 LSAVTILDSIGLDKTAFAAEAYSS   88 (157)
Q Consensus        65 ~~vi~I~G~gGiGKTtLa~~v~~~   88 (157)
                      ..-|.|+|.+|+|||||...+...
T Consensus         7 ~~~i~v~G~~~~GKSsli~~l~~~   30 (177)
T 1wms_A            7 LFKVILLGDGGVGKSSLMNRYVTN   30 (177)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             eeEEEEECCCCCCHHHHHHHHHcC
Confidence            456889999999999999988754

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=95.93  E-value=0.0054  Score=42.85  Aligned_cols=24  Identities=13%  Similarity=0.016  Sum_probs=20.6

Q ss_pred             ceEEEEEeCCCCcHHHHHHHHhcC
Q 045087           65 LSAVTILDSIGLDKTAFAAEAYSS   88 (157)
Q Consensus        65 ~~vi~I~G~gGiGKTtLa~~v~~~   88 (157)
                      ...|+++|.+|+|||||...+...
T Consensus        25 ~~ki~lvG~~~vGKSsLi~~l~~~   48 (198)
T 1f6b_A           25 TGKLVFLGLDNAGKTTLLHMLKDD   48 (198)
T ss_dssp             CEEEEEEEETTSSHHHHHHHHSCC
T ss_pred             CcEEEEECCCCCCHHHHHHHHhcC
Confidence            346889999999999999998763

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=95.92  E-value=0.006  Score=41.25  Aligned_cols=25  Identities=16%  Similarity=0.282  Sum_probs=21.5

Q ss_pred             CceEEEEEeCCCCcHHHHHHHHhcC
Q 045087           64 QLSAVTILDSIGLDKTAFAAEAYSS   88 (157)
Q Consensus        64 ~~~vi~I~G~gGiGKTtLa~~v~~~   88 (157)
                      ...-|.|+|.+|+|||||...+...
T Consensus         8 ~~~~i~v~G~~~~GKssli~~l~~~   32 (181)
T 2fn4_A            8 ETHKLVVVGGGGVGKSALTIQFIQS   32 (181)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhC
Confidence            4567899999999999999998764

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=95.92  E-value=0.0043  Score=42.86  Aligned_cols=25  Identities=16%  Similarity=0.179  Sum_probs=20.6

Q ss_pred             CceEEEEEeCCCCcHHHHHHHHhcC
Q 045087           64 QLSAVTILDSIGLDKTAFAAEAYSS   88 (157)
Q Consensus        64 ~~~vi~I~G~gGiGKTtLa~~v~~~   88 (157)
                      ..--|.|+|.+|+|||||...+...
T Consensus        19 ~~~ki~ivG~~~vGKSsL~~~~~~~   43 (184)
T 3ihw_A           19 PELKVGIVGNLSSGKSALVHRYLTG   43 (184)
T ss_dssp             CEEEEEEECCTTSCHHHHHHHHHHS
T ss_pred             CeeEEEEECCCCCCHHHHHHHHhcC
Confidence            3457889999999999999877654

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=95.92  E-value=0.0052  Score=47.73  Aligned_cols=24  Identities=8%  Similarity=0.043  Sum_probs=21.2

Q ss_pred             CceEEEEEeCCCCcHHHHHHHHhc
Q 045087           64 QLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        64 ~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ...+++|+|..|.|||||.+.+..
T Consensus        53 ~Gei~~IiGpnGaGKSTLlr~i~G   76 (366)
T 3tui_C           53 AGQIYGVIGASGAGKSTLIRCVNL   76 (366)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHT
T ss_pred             CCCEEEEEcCCCchHHHHHHHHhc
Confidence            346999999999999999999866

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=95.91  E-value=0.006  Score=42.12  Aligned_cols=26  Identities=12%  Similarity=0.012  Sum_probs=22.5

Q ss_pred             CceEEEEEeCCCCcHHHHHHHHhcCc
Q 045087           64 QLSAVTILDSIGLDKTAFAAEAYSSN   89 (157)
Q Consensus        64 ~~~vi~I~G~gGiGKTtLa~~v~~~~   89 (157)
                      ....|.|+|.+|+|||||...+....
T Consensus        16 ~~~ki~v~G~~~~GKSsl~~~l~~~~   41 (199)
T 4bas_A           16 TKLQVVMCGLDNSGKTTIINQVKPAQ   41 (199)
T ss_dssp             CEEEEEEECCTTSCHHHHHHHHSCCC
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence            46789999999999999999987753

>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}

Probab=95.91  E-value=0.011  Score=42.95  Aligned_cols=22  Identities=23%  Similarity=0.075  Sum_probs=18.7

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhc
Q 045087           66 SAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        66 ~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      -.|.+.|.||+||||+|..+..
T Consensus         7 l~I~~~~kgGvGKTt~a~~la~   28 (228)
T 2r8r_A            7 LKVFLGAAPGVGKTYAMLQAAH   28 (228)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCcHHHHHHHHHH
Confidence            3477889999999999988877

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=95.90  E-value=0.0048  Score=47.72  Aligned_cols=23  Identities=22%  Similarity=0.112  Sum_probs=20.8

Q ss_pred             ceEEEEEeCCCCcHHHHHHHHhc
Q 045087           65 LSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        65 ~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ..+++|+|..|+|||||.+.++.
T Consensus        41 Ge~~~llGpnGsGKSTLLr~iaG   63 (355)
T 1z47_A           41 GEMVGLLGPSGSGKTTILRLIAG   63 (355)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHHT
T ss_pred             CCEEEEECCCCCcHHHHHHHHhC
Confidence            45899999999999999999865

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=95.90  E-value=0.0041  Score=43.42  Aligned_cols=23  Identities=17%  Similarity=0.245  Sum_probs=20.1

Q ss_pred             CceEEEEEeCCCCcHHHHHHHHh
Q 045087           64 QLSAVTILDSIGLDKTAFAAEAY   86 (157)
Q Consensus        64 ~~~vi~I~G~gGiGKTtLa~~v~   86 (157)
                      ...-|.|+|.+|+|||||...+.
T Consensus        22 ~~~ki~vvG~~~vGKSsLi~~l~   44 (195)
T 3cbq_A           22 GIFKVMLVGESGVGKSTLAGTFG   44 (195)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHTC
T ss_pred             cEEEEEEECCCCCCHHHHHHHHH
Confidence            35678999999999999999985

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=95.90  E-value=0.0045  Score=42.56  Aligned_cols=23  Identities=17%  Similarity=-0.109  Sum_probs=19.5

Q ss_pred             ceEEEEEeCCCCcHHHHHHHHhc
Q 045087           65 LSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        65 ~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      .--|.|+|.+|+|||||.+.+..
T Consensus        14 ~~ki~vvG~~~~GKssL~~~l~~   36 (198)
T 3t1o_A           14 NFKIVYYGPGLSGKTTNLKWIYS   36 (198)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHH
T ss_pred             ccEEEEECCCCCCHHHHHHHHHh
Confidence            45688999999999999987764

>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A

Probab=95.90  E-value=0.0066  Score=48.46  Aligned_cols=23  Identities=9%  Similarity=0.036  Sum_probs=20.7

Q ss_pred             ceEEEEEeCCCCcHHHHHHHHhc
Q 045087           65 LSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        65 ~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ..+|.++|++|+||||+++.+.+
T Consensus        39 ~~~IvlvGlpGsGKSTia~~La~   61 (469)
T 1bif_A           39 PTLIVMVGLPARGKTYISKKLTR   61 (469)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             cEEEEEECCCCCCHHHHHHHHHH
Confidence            45788999999999999999877

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=95.89  E-value=0.0046  Score=41.79  Aligned_cols=25  Identities=12%  Similarity=0.236  Sum_probs=21.3

Q ss_pred             CceEEEEEeCCCCcHHHHHHHHhcC
Q 045087           64 QLSAVTILDSIGLDKTAFAAEAYSS   88 (157)
Q Consensus        64 ~~~vi~I~G~gGiGKTtLa~~v~~~   88 (157)
                      ...-|.|+|.+|+|||||...+...
T Consensus        14 ~~~~i~v~G~~~~GKSsli~~l~~~   38 (179)
T 1z0f_A           14 YIFKYIIIGDMGVGKSCLLHQFTEK   38 (179)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             cceEEEEECCCCCCHHHHHHHHHcC
Confidence            3567889999999999999998764

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=95.89  E-value=0.0055  Score=47.48  Aligned_cols=23  Identities=22%  Similarity=0.073  Sum_probs=20.8

Q ss_pred             ceEEEEEeCCCCcHHHHHHHHhc
Q 045087           65 LSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        65 ~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ..+++|+|+.|+|||||.+.++.
T Consensus        29 Ge~~~llGpnGsGKSTLLr~iaG   51 (359)
T 2yyz_A           29 GEFVALLGPSGCGKTTTLLMLAG   51 (359)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHHT
T ss_pred             CCEEEEEcCCCchHHHHHHHHHC
Confidence            45899999999999999999976

>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}

Probab=95.89  E-value=0.0052  Score=43.54  Aligned_cols=23  Identities=13%  Similarity=0.033  Sum_probs=21.0

Q ss_pred             ceEEEEEeCCCCcHHHHHHHHhc
Q 045087           65 LSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        65 ~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ..+|+|.|+.|+||||+++.+..
T Consensus         6 ~~iI~i~g~~GsGk~ti~~~la~   28 (201)
T 3fdi_A            6 QIIIAIGREFGSGGHLVAKKLAE   28 (201)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CeEEEEeCCCCCCHHHHHHHHHH
Confidence            35899999999999999999977

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=95.86  E-value=0.0063  Score=41.40  Aligned_cols=24  Identities=13%  Similarity=0.191  Sum_probs=20.7

Q ss_pred             ceEEEEEeCCCCcHHHHHHHHhcC
Q 045087           65 LSAVTILDSIGLDKTAFAAEAYSS   88 (157)
Q Consensus        65 ~~vi~I~G~gGiGKTtLa~~v~~~   88 (157)
                      ...|.|+|.+|+|||||...+...
T Consensus         6 ~~ki~~~G~~~~GKSsli~~l~~~   29 (181)
T 3t5g_A            6 SRKIAILGYRSVGKSSLTIQFVEG   29 (181)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eEEEEEECcCCCCHHHHHHHHHcC
Confidence            457889999999999999988753

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=95.86  E-value=0.0052  Score=46.25  Aligned_cols=25  Identities=8%  Similarity=0.141  Sum_probs=22.0

Q ss_pred             CceEEEEEeCCCCcHHHHHHHHhcC
Q 045087           64 QLSAVTILDSIGLDKTAFAAEAYSS   88 (157)
Q Consensus        64 ~~~vi~I~G~gGiGKTtLa~~v~~~   88 (157)
                      +...|+|+|.+|+|||||...+...
T Consensus         7 r~~~VaIvG~~nvGKSTLln~L~g~   31 (301)
T 1ega_A            7 YCGFIAIVGRPNVGKSTLLNKLLGQ   31 (301)
T ss_dssp             EEEEEEEECSSSSSHHHHHHHHHTC
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHCC
Confidence            4568999999999999999998764

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=95.86  E-value=0.0049  Score=42.72  Aligned_cols=24  Identities=13%  Similarity=-0.004  Sum_probs=20.2

Q ss_pred             ceEEEEEeCCCCcHHHHHHHHhcC
Q 045087           65 LSAVTILDSIGLDKTAFAAEAYSS   88 (157)
Q Consensus        65 ~~vi~I~G~gGiGKTtLa~~v~~~   88 (157)
                      ...|+++|.+|+|||||...+...
T Consensus        23 ~~ki~~vG~~~vGKSsli~~l~~~   46 (190)
T 1m2o_B           23 HGKLLFLGLDNAGKTTLLHMLKND   46 (190)
T ss_dssp             -CEEEEEESTTSSHHHHHHHHHHS
T ss_pred             ccEEEEECCCCCCHHHHHHHHhcC
Confidence            347889999999999999988763

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=95.86  E-value=0.0047  Score=42.67  Aligned_cols=24  Identities=21%  Similarity=0.274  Sum_probs=20.5

Q ss_pred             ceEEEEEeCCCCcHHHHHHHHhcC
Q 045087           65 LSAVTILDSIGLDKTAFAAEAYSS   88 (157)
Q Consensus        65 ~~vi~I~G~gGiGKTtLa~~v~~~   88 (157)
                      .--|.|+|.+|+|||||...+...
T Consensus        21 ~~ki~vvG~~~vGKTsLi~~l~~~   44 (187)
T 3c5c_A           21 EVNLAILGRRGAGKSALTVKFLTK   44 (187)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             eEEEEEECCCCCcHHHHHHHHHhC
Confidence            456889999999999999888764

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=95.85  E-value=0.0048  Score=42.15  Aligned_cols=23  Identities=13%  Similarity=0.293  Sum_probs=20.1

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhcC
Q 045087           66 SAVTILDSIGLDKTAFAAEAYSS   88 (157)
Q Consensus        66 ~vi~I~G~gGiGKTtLa~~v~~~   88 (157)
                      --|.|+|.+|+|||||...+...
T Consensus         5 ~ki~v~G~~~~GKSsli~~l~~~   27 (189)
T 4dsu_A            5 YKLVVVGADGVGKSALTIQLIQN   27 (189)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHhC
Confidence            45789999999999999998764

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=95.85  E-value=0.0068  Score=40.63  Aligned_cols=24  Identities=21%  Similarity=0.079  Sum_probs=20.6

Q ss_pred             ceEEEEEeCCCCcHHHHHHHHhcC
Q 045087           65 LSAVTILDSIGLDKTAFAAEAYSS   88 (157)
Q Consensus        65 ~~vi~I~G~gGiGKTtLa~~v~~~   88 (157)
                      ...|.++|.+|+|||||...+...
T Consensus         7 ~~~i~v~G~~~~GKssl~~~l~~~   30 (171)
T 1upt_A            7 EMRILILGLDGAGKTTILYRLQVG   30 (171)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ccEEEEECCCCCCHHHHHHHHhcC
Confidence            456889999999999999998653

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=95.85  E-value=0.0048  Score=42.21  Aligned_cols=24  Identities=21%  Similarity=0.184  Sum_probs=20.7

Q ss_pred             ceEEEEEeCCCCcHHHHHHHHhcC
Q 045087           65 LSAVTILDSIGLDKTAFAAEAYSS   88 (157)
Q Consensus        65 ~~vi~I~G~gGiGKTtLa~~v~~~   88 (157)
                      ..-|.|+|.+|+|||||...+...
T Consensus        11 ~~ki~v~G~~~~GKSsli~~l~~~   34 (195)
T 3bc1_A           11 LIKFLALGDSGVGKTSVLYQYTDG   34 (195)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcC
Confidence            457889999999999999988763

>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*

Probab=95.84  E-value=0.0071  Score=49.68  Aligned_cols=24  Identities=17%  Similarity=0.032  Sum_probs=21.5

Q ss_pred             CceEEEEEeCCCCcHHHHHHHHhc
Q 045087           64 QLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        64 ~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      +..+|.|.|++|+||||+|+.+..
T Consensus       395 ~~~~I~l~GlsGSGKSTiA~~La~  418 (573)
T 1m8p_A          395 QGFTIFLTGYMNSGKDAIARALQV  418 (573)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             cceEEEeecCCCCCHHHHHHHHHH
Confidence            457899999999999999999877

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=95.83  E-value=0.0059  Score=47.68  Aligned_cols=23  Identities=13%  Similarity=0.068  Sum_probs=20.9

Q ss_pred             ceEEEEEeCCCCcHHHHHHHHhc
Q 045087           65 LSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        65 ~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ..+++|+|+.|+|||||.+.+..
T Consensus        29 Ge~~~llGpsGsGKSTLLr~iaG   51 (381)
T 3rlf_A           29 GEFVVFVGPSGCGKSTLLRMIAG   51 (381)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHHT
T ss_pred             CCEEEEEcCCCchHHHHHHHHHc
Confidence            45899999999999999999976

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=95.83  E-value=0.0054  Score=41.81  Aligned_cols=25  Identities=12%  Similarity=0.284  Sum_probs=21.3

Q ss_pred             CceEEEEEeCCCCcHHHHHHHHhcC
Q 045087           64 QLSAVTILDSIGLDKTAFAAEAYSS   88 (157)
Q Consensus        64 ~~~vi~I~G~gGiGKTtLa~~v~~~   88 (157)
                      ..--|.|+|.+|+|||||...+...
T Consensus        17 ~~~ki~v~G~~~~GKSsl~~~l~~~   41 (183)
T 3kkq_A           17 PTYKLVVVGDGGVGKSALTIQFFQK   41 (183)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhC
Confidence            3457889999999999999998764

>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10

Probab=95.82  E-value=0.01  Score=43.33  Aligned_cols=22  Identities=23%  Similarity=0.249  Sum_probs=19.1

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhc
Q 045087           66 SAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        66 ~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ++|+|.|-||+||||+|..+..
T Consensus         2 ~vI~vs~KGGvGKTT~a~nLA~   23 (269)
T 1cp2_A            2 RQVAIYGKGGIGKSTTTQNLTS   23 (269)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHH
T ss_pred             cEEEEecCCCCcHHHHHHHHHH
Confidence            5788889999999999987766

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=95.82  E-value=0.0053  Score=41.93  Aligned_cols=25  Identities=12%  Similarity=0.171  Sum_probs=21.1

Q ss_pred             CceEEEEEeCCCCcHHHHHHHHhcC
Q 045087           64 QLSAVTILDSIGLDKTAFAAEAYSS   88 (157)
Q Consensus        64 ~~~vi~I~G~gGiGKTtLa~~v~~~   88 (157)
                      ...-|.|+|.+|+|||||...+...
T Consensus         9 ~~~ki~v~G~~~~GKSsli~~l~~~   33 (186)
T 2bme_A            9 FLFKFLVIGNAGTGKSCLLHQFIEK   33 (186)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             cceEEEEECCCCCCHHHHHHHHHcC
Confidence            3457889999999999999988754

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=95.81  E-value=0.006  Score=42.40  Aligned_cols=24  Identities=4%  Similarity=0.101  Sum_probs=20.4

Q ss_pred             ceEEEEEeCCCCcHHHHHHHHhcC
Q 045087           65 LSAVTILDSIGLDKTAFAAEAYSS   88 (157)
Q Consensus        65 ~~vi~I~G~gGiGKTtLa~~v~~~   88 (157)
                      ..-|.++|.+|+|||||...+.+.
T Consensus        20 ~~ki~~vG~~~vGKTsLi~~l~~~   43 (196)
T 3llu_A           20 KPRILLMGLRRSGKSSIQKVVFHK   43 (196)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHHSC
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhc
Confidence            457889999999999999877663

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=95.81  E-value=0.0052  Score=41.86  Aligned_cols=24  Identities=8%  Similarity=0.068  Sum_probs=20.1

Q ss_pred             ceEEEEEeCCCCcHHHHHHHHhcC
Q 045087           65 LSAVTILDSIGLDKTAFAAEAYSS   88 (157)
Q Consensus        65 ~~vi~I~G~gGiGKTtLa~~v~~~   88 (157)
                      .--|.++|.+|+|||||...+...
T Consensus         5 ~~~i~~~G~~~~GKssl~~~l~~~   28 (186)
T 1mh1_A            5 AIKCVVVGDGAVGKTCLLISYTTN   28 (186)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEEECCCCCCHHHHHHHHHcC
Confidence            346889999999999999888754

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=95.81  E-value=0.006  Score=41.20  Aligned_cols=23  Identities=13%  Similarity=0.138  Sum_probs=19.8

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhcC
Q 045087           66 SAVTILDSIGLDKTAFAAEAYSS   88 (157)
Q Consensus        66 ~vi~I~G~gGiGKTtLa~~v~~~   88 (157)
                      .-|.|+|.+|+|||||...+...
T Consensus        15 ~~i~v~G~~~~GKssli~~l~~~   37 (179)
T 2y8e_A           15 FKLVFLGEQSVGKTSLITRFMYD   37 (179)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Confidence            46889999999999999988753

>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*

Probab=95.79  E-value=0.0064  Score=42.47  Aligned_cols=22  Identities=14%  Similarity=-0.064  Sum_probs=18.4

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhc
Q 045087           66 SAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        66 ~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      .++.++|..|+||||++..+++
T Consensus         4 ~i~vi~G~~gsGKTT~ll~~~~   25 (184)
T 2orw_A            4 KLTVITGPMYSGKTTELLSFVE   25 (184)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            4788999999999999965554

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=95.79  E-value=0.0062  Score=47.30  Aligned_cols=24  Identities=13%  Similarity=0.218  Sum_probs=21.2

Q ss_pred             CceEEEEEeCCCCcHHHHHHHHhc
Q 045087           64 QLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        64 ~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ...+++|+|..|.|||||++.+..
T Consensus       135 ~g~~i~ivG~~GsGKTTll~~l~~  158 (372)
T 2ewv_A          135 KMGLILVTGPTGSGKSTTIASMID  158 (372)
T ss_dssp             SSEEEEEECSSSSSHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHh
Confidence            356899999999999999988865

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=95.79  E-value=0.0051  Score=42.43  Aligned_cols=25  Identities=16%  Similarity=0.218  Sum_probs=21.2

Q ss_pred             CceEEEEEeCCCCcHHHHHHHHhcC
Q 045087           64 QLSAVTILDSIGLDKTAFAAEAYSS   88 (157)
Q Consensus        64 ~~~vi~I~G~gGiGKTtLa~~v~~~   88 (157)
                      ...-|.|+|.+|+|||||...+...
T Consensus        24 ~~~ki~v~G~~~~GKSsLi~~l~~~   48 (193)
T 2oil_A           24 FVFKVVLIGESGVGKTNLLSRFTRN   48 (193)
T ss_dssp             EEEEEEEESSTTSSHHHHHHHHHHS
T ss_pred             cceEEEEECcCCCCHHHHHHHHhcC
Confidence            3457889999999999999988764

>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A

Probab=95.79  E-value=0.0071  Score=44.86  Aligned_cols=23  Identities=13%  Similarity=0.225  Sum_probs=19.8

Q ss_pred             ceEEEEEeCCCCcHHHHHHHHhc
Q 045087           65 LSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        65 ~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      .++|+|.|-||+||||+|..+..
T Consensus         2 MkvIavs~KGGvGKTT~a~nLA~   24 (289)
T 2afh_E            2 MRQCAIYGKGGIGKSTTTQNLVA   24 (289)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHH
T ss_pred             ceEEEEeCCCcCcHHHHHHHHHH
Confidence            36788899999999999988766

>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=95.78  E-value=0.0051  Score=44.74  Aligned_cols=23  Identities=17%  Similarity=0.058  Sum_probs=19.9

Q ss_pred             ceEEEEEeCCCCcHHHHHHHHhc
Q 045087           65 LSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        65 ~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ...++|.|++|+||||+|+.+..
T Consensus         8 ~~~~~~~G~pGsGKsT~a~~L~~   30 (230)
T 3gmt_A            8 HMRLILLGAPGAGKGTQANFIKE   30 (230)
T ss_dssp             -CEEEEECCTTSCHHHHHHHHHH
T ss_pred             ccceeeECCCCCCHHHHHHHHHH
Confidence            45689999999999999998876

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=95.78  E-value=0.0079  Score=42.89  Aligned_cols=25  Identities=8%  Similarity=0.163  Sum_probs=22.1

Q ss_pred             CceEEEEEeCCCCcHHHHHHHHhcC
Q 045087           64 QLSAVTILDSIGLDKTAFAAEAYSS   88 (157)
Q Consensus        64 ~~~vi~I~G~gGiGKTtLa~~v~~~   88 (157)
                      +...|.|+|.+|+|||||...+...
T Consensus        28 ~~~kI~vvG~~~vGKSsLin~l~~~   52 (228)
T 2qu8_A           28 HKKTIILSGAPNVGKSSFMNIVSRA   52 (228)
T ss_dssp             TSEEEEEECSTTSSHHHHHHHHTTT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            4578899999999999999999775

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=95.78  E-value=0.006  Score=42.44  Aligned_cols=24  Identities=17%  Similarity=0.238  Sum_probs=20.8

Q ss_pred             ceEEEEEeCCCCcHHHHHHHHhcC
Q 045087           65 LSAVTILDSIGLDKTAFAAEAYSS   88 (157)
Q Consensus        65 ~~vi~I~G~gGiGKTtLa~~v~~~   88 (157)
                      ..-|.|+|.+|+|||||...+...
T Consensus         8 ~~ki~v~G~~~~GKSsli~~l~~~   31 (203)
T 1zbd_A            8 MFKILIIGNSSVGKTSFLFRYADD   31 (203)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHTC
T ss_pred             eeEEEEECCCCCCHHHHHHHHhcC
Confidence            456889999999999999998764

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=95.77  E-value=0.006  Score=41.51  Aligned_cols=24  Identities=25%  Similarity=0.322  Sum_probs=20.7

Q ss_pred             ceEEEEEeCCCCcHHHHHHHHhcC
Q 045087           65 LSAVTILDSIGLDKTAFAAEAYSS   88 (157)
Q Consensus        65 ~~vi~I~G~gGiGKTtLa~~v~~~   88 (157)
                      ..-|.|+|.+|+|||||...+...
T Consensus        18 ~~ki~v~G~~~~GKSsli~~l~~~   41 (187)
T 2a9k_A           18 LHKVIMVGSGGVGKSALTLQFMYD   41 (187)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECCCCCCHHHHHHHHhhC
Confidence            456889999999999999998764

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=95.77  E-value=0.0039  Score=42.37  Aligned_cols=24  Identities=8%  Similarity=0.076  Sum_probs=20.4

Q ss_pred             ceEEEEEeCCCCcHHHHHHHHhcC
Q 045087           65 LSAVTILDSIGLDKTAFAAEAYSS   88 (157)
Q Consensus        65 ~~vi~I~G~gGiGKTtLa~~v~~~   88 (157)
                      .--|.++|.+|+|||||...+...
T Consensus         7 ~~ki~~vG~~~vGKTsli~~l~~~   30 (178)
T 2iwr_A            7 ELRLGVLGDARSGKSSLIHRFLTG   30 (178)
T ss_dssp             EEEEEEECCGGGCHHHHHHHHHHS
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhC
Confidence            346789999999999999988764

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=95.77  E-value=0.0059  Score=42.48  Aligned_cols=23  Identities=17%  Similarity=0.234  Sum_probs=19.6

Q ss_pred             ceEEEEEeCCCCcHHHHHHHHhc
Q 045087           65 LSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        65 ~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ..-|.|+|.+|+|||||...+..
T Consensus         6 ~~kv~lvG~~~vGKSsL~~~~~~   28 (192)
T 2cjw_A            6 YYRVVLIGEQGVGKSTLANIFAG   28 (192)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEEECCCCCCHHHHHHHHhc
Confidence            35688999999999999988863

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=95.77  E-value=0.0065  Score=46.93  Aligned_cols=23  Identities=26%  Similarity=0.192  Sum_probs=20.8

Q ss_pred             ceEEEEEeCCCCcHHHHHHHHhc
Q 045087           65 LSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        65 ~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ..+++|+|..|+|||||.+.++.
T Consensus        31 Ge~~~llGpnGsGKSTLLr~iaG   53 (353)
T 1oxx_K           31 GERFGILGPSGAGKTTFMRIIAG   53 (353)
T ss_dssp             TCEEEEECSCHHHHHHHHHHHHT
T ss_pred             CCEEEEECCCCCcHHHHHHHHhC
Confidence            45899999999999999999865

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=95.76  E-value=0.0051  Score=46.35  Aligned_cols=21  Identities=14%  Similarity=0.384  Sum_probs=18.5

Q ss_pred             EEEEEeCCCCcHHHHHHHHhc
Q 045087           67 AVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        67 vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      -|+|+|.+|+|||||...++.
T Consensus        20 ~I~lvG~nG~GKSTLl~~L~g   40 (301)
T 2qnr_A           20 TLMVVGESGLGKSTLINSLFL   40 (301)
T ss_dssp             EEEEEEETTSSHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            458999999999999999765

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=95.75  E-value=0.0055  Score=42.18  Aligned_cols=24  Identities=8%  Similarity=0.097  Sum_probs=20.9

Q ss_pred             ceEEEEEeCCCCcHHHHHHHHhcC
Q 045087           65 LSAVTILDSIGLDKTAFAAEAYSS   88 (157)
Q Consensus        65 ~~vi~I~G~gGiGKTtLa~~v~~~   88 (157)
                      .--|+|+|.+|+|||||...+...
T Consensus         7 ~~ki~v~G~~~~GKSsli~~l~~~   30 (208)
T 3clv_A            7 SYKTVLLGESSVGKSSIVLRLTKD   30 (208)
T ss_dssp             SEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhC
Confidence            456889999999999999998775

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=95.75  E-value=0.0066  Score=41.33  Aligned_cols=25  Identities=20%  Similarity=0.076  Sum_probs=21.5

Q ss_pred             CceEEEEEeCCCCcHHHHHHHHhcC
Q 045087           64 QLSAVTILDSIGLDKTAFAAEAYSS   88 (157)
Q Consensus        64 ~~~vi~I~G~gGiGKTtLa~~v~~~   88 (157)
                      +...|.|+|.+|+|||||...+...
T Consensus        17 ~~~~i~v~G~~~~GKssli~~l~~~   41 (183)
T 1moz_A           17 KELRILILGLDGAGKTTILYRLQIG   41 (183)
T ss_dssp             SCEEEEEEEETTSSHHHHHHHTCCS
T ss_pred             CccEEEEECCCCCCHHHHHHHHhcC
Confidence            4567889999999999999998753

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=95.75  E-value=0.0061  Score=41.34  Aligned_cols=24  Identities=13%  Similarity=0.277  Sum_probs=20.5

Q ss_pred             ceEEEEEeCCCCcHHHHHHHHhcC
Q 045087           65 LSAVTILDSIGLDKTAFAAEAYSS   88 (157)
Q Consensus        65 ~~vi~I~G~gGiGKTtLa~~v~~~   88 (157)
                      ..-|.|+|.+|+|||||...+...
T Consensus        12 ~~ki~v~G~~~~GKSsli~~l~~~   35 (181)
T 2efe_B           12 NAKLVLLGDVGAGKSSLVLRFVKD   35 (181)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHHHC
T ss_pred             ceEEEEECcCCCCHHHHHHHHHcC
Confidence            346889999999999999988764

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=95.75  E-value=0.0057  Score=41.47  Aligned_cols=24  Identities=17%  Similarity=0.200  Sum_probs=20.6

Q ss_pred             ceEEEEEeCCCCcHHHHHHHHhcC
Q 045087           65 LSAVTILDSIGLDKTAFAAEAYSS   88 (157)
Q Consensus        65 ~~vi~I~G~gGiGKTtLa~~v~~~   88 (157)
                      ..-|.++|.+|+|||||...+...
T Consensus        10 ~~~i~v~G~~~~GKssli~~l~~~   33 (180)
T 2g6b_A           10 AFKVMLVGDSGVGKTCLLVRFKDG   33 (180)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECcCCCCHHHHHHHHHhC
Confidence            456889999999999999988764

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=95.74  E-value=0.0057  Score=41.53  Aligned_cols=24  Identities=13%  Similarity=0.070  Sum_probs=20.3

Q ss_pred             ceEEEEEeCCCCcHHHHHHHHhcC
Q 045087           65 LSAVTILDSIGLDKTAFAAEAYSS   88 (157)
Q Consensus        65 ~~vi~I~G~gGiGKTtLa~~v~~~   88 (157)
                      .--|.|+|.+|+|||||...+...
T Consensus         8 ~~ki~v~G~~~~GKssl~~~~~~~   31 (182)
T 3bwd_D            8 FIKCVTVGDGAVGKTCLLISYTSN   31 (182)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcC
Confidence            346789999999999999988764

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=95.73  E-value=0.0059  Score=42.56  Aligned_cols=25  Identities=24%  Similarity=0.232  Sum_probs=21.4

Q ss_pred             CceEEEEEeCCCCcHHHHHHHHhcC
Q 045087           64 QLSAVTILDSIGLDKTAFAAEAYSS   88 (157)
Q Consensus        64 ~~~vi~I~G~gGiGKTtLa~~v~~~   88 (157)
                      +..-|.|+|.+|+|||||...+...
T Consensus        23 ~~~ki~vvG~~~~GKSsli~~l~~~   47 (201)
T 3oes_A           23 RYRKVVILGYRCVGKTSLAHQFVEG   47 (201)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             CcEEEEEECCCCcCHHHHHHHHHhC
Confidence            3567899999999999999998764

>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}

Probab=95.73  E-value=0.015  Score=44.81  Aligned_cols=24  Identities=17%  Similarity=0.112  Sum_probs=20.2

Q ss_pred             CceEEEEEeCCCCcHHHHHHHHhc
Q 045087           64 QLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        64 ~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ..+++.+.|-||+||||+|..+..
T Consensus        17 ~~~i~~~~gkGGvGKTt~a~~lA~   40 (348)
T 3io3_A           17 SLKWIFVGGKGGVGKTTTSSSVAV   40 (348)
T ss_dssp             TCSEEEEECSTTSSHHHHHHHHHH
T ss_pred             CcEEEEEeCCCCCcHHHHHHHHHH
Confidence            457888899999999999977754

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=95.72  E-value=0.0057  Score=42.40  Aligned_cols=24  Identities=17%  Similarity=0.290  Sum_probs=20.7

Q ss_pred             ceEEEEEeCCCCcHHHHHHHHhcC
Q 045087           65 LSAVTILDSIGLDKTAFAAEAYSS   88 (157)
Q Consensus        65 ~~vi~I~G~gGiGKTtLa~~v~~~   88 (157)
                      ..-|.|+|.+|+|||||...+...
T Consensus        28 ~~ki~v~G~~~vGKSsli~~l~~~   51 (196)
T 2atv_A           28 EVKLAIFGRAGVGKSALVVRFLTK   51 (196)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhC
Confidence            456889999999999999988764

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=95.72  E-value=0.0057  Score=42.56  Aligned_cols=25  Identities=28%  Similarity=0.339  Sum_probs=21.2

Q ss_pred             CceEEEEEeCCCCcHHHHHHHHhcC
Q 045087           64 QLSAVTILDSIGLDKTAFAAEAYSS   88 (157)
Q Consensus        64 ~~~vi~I~G~gGiGKTtLa~~v~~~   88 (157)
                      ....|.|+|.+|+|||||...+...
T Consensus         7 ~~~ki~v~G~~~~GKSsli~~l~~~   31 (207)
T 1vg8_A            7 VLLKVIILGDSGVGKTSLMNQYVNK   31 (207)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             cceEEEEECcCCCCHHHHHHHHHcC
Confidence            3557889999999999999988764

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=95.70  E-value=0.0076  Score=42.22  Aligned_cols=24  Identities=8%  Similarity=0.068  Sum_probs=20.5

Q ss_pred             ceEEEEEeCCCCcHHHHHHHHhcC
Q 045087           65 LSAVTILDSIGLDKTAFAAEAYSS   88 (157)
Q Consensus        65 ~~vi~I~G~gGiGKTtLa~~v~~~   88 (157)
                      .--|.++|.+|+|||||...+...
T Consensus        30 ~~ki~vvG~~~~GKSsLi~~l~~~   53 (204)
T 4gzl_A           30 AIKCVVVGDGAVGKTCLLISYTTN   53 (204)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eEEEEEECcCCCCHHHHHHHHHhC
Confidence            456789999999999999888754

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=95.70  E-value=0.0067  Score=42.11  Aligned_cols=24  Identities=8%  Similarity=-0.050  Sum_probs=20.9

Q ss_pred             ceEEEEEeCCCCcHHHHHHHHhcC
Q 045087           65 LSAVTILDSIGLDKTAFAAEAYSS   88 (157)
Q Consensus        65 ~~vi~I~G~gGiGKTtLa~~v~~~   88 (157)
                      ..-|.|+|.+|+|||||...+...
T Consensus        29 ~~ki~v~G~~~vGKSsLi~~l~~~   52 (192)
T 2b6h_A           29 QMRILMVGLDAAGKTTILYKLKLG   52 (192)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHCSS
T ss_pred             ccEEEEECCCCCCHHHHHHHHHhC
Confidence            456899999999999999998754

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=95.70  E-value=0.0065  Score=42.18  Aligned_cols=25  Identities=24%  Similarity=0.307  Sum_probs=21.1

Q ss_pred             CceEEEEEeCCCCcHHHHHHHHhcC
Q 045087           64 QLSAVTILDSIGLDKTAFAAEAYSS   88 (157)
Q Consensus        64 ~~~vi~I~G~gGiGKTtLa~~v~~~   88 (157)
                      ...-|.|+|.+|+|||||...+...
T Consensus        13 ~~~ki~v~G~~~~GKSsli~~l~~~   37 (206)
T 2bov_A           13 ALHKVIMVGSGGVGKSALTLQFMYD   37 (206)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHhC
Confidence            3457889999999999999988754

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=95.70  E-value=0.0063  Score=42.02  Aligned_cols=24  Identities=17%  Similarity=0.220  Sum_probs=20.5

Q ss_pred             ceEEEEEeCCCCcHHHHHHHHhcC
Q 045087           65 LSAVTILDSIGLDKTAFAAEAYSS   88 (157)
Q Consensus        65 ~~vi~I~G~gGiGKTtLa~~v~~~   88 (157)
                      .--|.|+|.+|+|||||...+...
T Consensus        23 ~~ki~v~G~~~~GKSsli~~l~~~   46 (191)
T 3dz8_A           23 MFKLLIIGNSSVGKTSFLFRYADD   46 (191)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             eeEEEEECCCCcCHHHHHHHHhcC
Confidence            456889999999999999988763

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=95.70  E-value=0.0068  Score=42.09  Aligned_cols=24  Identities=8%  Similarity=0.069  Sum_probs=20.3

Q ss_pred             ceEEEEEeCCCCcHHHHHHHHhcC
Q 045087           65 LSAVTILDSIGLDKTAFAAEAYSS   88 (157)
Q Consensus        65 ~~vi~I~G~gGiGKTtLa~~v~~~   88 (157)
                      ..-|.|+|.+|+|||||...+...
T Consensus        20 ~~ki~~~G~~~~GKssl~~~l~~~   43 (201)
T 2q3h_A           20 GVKCVLVGDGAVGKTSLVVSYTTN   43 (201)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHC-
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhC
Confidence            456889999999999999988764

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=95.69  E-value=0.0057  Score=47.27  Aligned_cols=22  Identities=14%  Similarity=0.232  Sum_probs=20.3

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhc
Q 045087           66 SAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        66 ~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ..++|+|..|.|||||++.+..
T Consensus       176 ~~i~ivG~sGsGKSTll~~l~~  197 (361)
T 2gza_A          176 RVIVVAGETGSGKTTLMKALMQ  197 (361)
T ss_dssp             CCEEEEESSSSCHHHHHHHHHT
T ss_pred             CEEEEECCCCCCHHHHHHHHHh
Confidence            4899999999999999999976

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=95.69  E-value=0.0084  Score=41.25  Aligned_cols=25  Identities=12%  Similarity=0.191  Sum_probs=21.4

Q ss_pred             CceEEEEEeCCCCcHHHHHHHHhcC
Q 045087           64 QLSAVTILDSIGLDKTAFAAEAYSS   88 (157)
Q Consensus        64 ~~~vi~I~G~gGiGKTtLa~~v~~~   88 (157)
                      ...-|.|+|.+|+|||||...+...
T Consensus        15 ~~~ki~v~G~~~~GKSsli~~l~~~   39 (196)
T 3tkl_A           15 YLFKLLLIGDSGVGKSCLLLRFADD   39 (196)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             cceEEEEECcCCCCHHHHHHHHHcC
Confidence            3457899999999999999998764

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=95.68  E-value=0.013  Score=40.21  Aligned_cols=25  Identities=16%  Similarity=-0.013  Sum_probs=21.4

Q ss_pred             CceEEEEEeCCCCcHHHHHHHHhcC
Q 045087           64 QLSAVTILDSIGLDKTAFAAEAYSS   88 (157)
Q Consensus        64 ~~~vi~I~G~gGiGKTtLa~~v~~~   88 (157)
                      +..-|.|+|.+|+|||||...+...
T Consensus        21 ~~~~i~v~G~~~~GKssli~~l~~~   45 (189)
T 2x77_A           21 RKIRVLMLGLDNAGKTSILYRLHLG   45 (189)
T ss_dssp             SCEEEEEEEETTSSHHHHHHHTCCS
T ss_pred             CceEEEEECCCCCCHHHHHHHHHcC
Confidence            4567899999999999999998653

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=95.68  E-value=0.0064  Score=42.85  Aligned_cols=25  Identities=12%  Similarity=0.040  Sum_probs=21.3

Q ss_pred             CceEEEEEeCCCCcHHHHHHHHhcC
Q 045087           64 QLSAVTILDSIGLDKTAFAAEAYSS   88 (157)
Q Consensus        64 ~~~vi~I~G~gGiGKTtLa~~v~~~   88 (157)
                      ...-|.|+|.+|+|||||...+...
T Consensus        27 ~~~ki~vvG~~~vGKSsLi~~l~~~   51 (205)
T 1gwn_A           27 VKCKIVVVGDSQCGKTALLHVFAKD   51 (205)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eeeEEEEECCCCCCHHHHHHHHhcC
Confidence            3457889999999999999988764

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=95.68  E-value=0.0092  Score=40.80  Aligned_cols=26  Identities=12%  Similarity=0.035  Sum_probs=22.2

Q ss_pred             CceEEEEEeCCCCcHHHHHHHHhcCc
Q 045087           64 QLSAVTILDSIGLDKTAFAAEAYSSN   89 (157)
Q Consensus        64 ~~~vi~I~G~gGiGKTtLa~~v~~~~   89 (157)
                      +...|.++|.+|+|||||...+....
T Consensus        17 ~~~~i~v~G~~~~GKssl~~~l~~~~   42 (186)
T 1ksh_A           17 RELRLLMLGLDNAGKTTILKKFNGED   42 (186)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred             CeeEEEEECCCCCCHHHHHHHHhcCC
Confidence            45678999999999999999998653

>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*

Probab=95.68  E-value=0.021  Score=41.02  Aligned_cols=23  Identities=17%  Similarity=-0.035  Sum_probs=21.0

Q ss_pred             ceEEEEEeCCCCcHHHHHHHHhc
Q 045087           65 LSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        65 ~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ...|.+.|+.|+||||+++.+.+
T Consensus         5 g~~i~~eG~~g~GKst~~~~l~~   27 (216)
T 3tmk_A            5 GKLILIEGLDRTGKTTQCNILYK   27 (216)
T ss_dssp             CCEEEEEECSSSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999999988

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=95.67  E-value=0.0064  Score=42.74  Aligned_cols=25  Identities=16%  Similarity=0.270  Sum_probs=21.1

Q ss_pred             CceEEEEEeCCCCcHHHHHHHHhcC
Q 045087           64 QLSAVTILDSIGLDKTAFAAEAYSS   88 (157)
Q Consensus        64 ~~~vi~I~G~gGiGKTtLa~~v~~~   88 (157)
                      ...-|+|+|.+|+|||||...+...
T Consensus        25 ~~~ki~lvG~~~vGKSsLi~~l~~~   49 (201)
T 2ew1_A           25 FLFKIVLIGNAGVGKTCLVRRFTQG   49 (201)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             cceEEEEECcCCCCHHHHHHHHHhC
Confidence            3567889999999999999988653

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=95.67  E-value=0.0064  Score=42.05  Aligned_cols=24  Identities=17%  Similarity=0.252  Sum_probs=20.8

Q ss_pred             ceEEEEEeCCCCcHHHHHHHHhcC
Q 045087           65 LSAVTILDSIGLDKTAFAAEAYSS   88 (157)
Q Consensus        65 ~~vi~I~G~gGiGKTtLa~~v~~~   88 (157)
                      .--|+|+|.+|+|||||...+...
T Consensus        23 ~~ki~vvG~~~~GKSsli~~l~~~   46 (192)
T 2fg5_A           23 ELKVCLLGDTGVGKSSIVCRFVQD   46 (192)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHHC
T ss_pred             ceEEEEECcCCCCHHHHHHHHhcC
Confidence            456889999999999999998764

>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*

Probab=95.67  E-value=0.0068  Score=50.29  Aligned_cols=24  Identities=17%  Similarity=0.058  Sum_probs=21.7

Q ss_pred             CceEEEEEeCCCCcHHHHHHHHhc
Q 045087           64 QLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        64 ~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      +..+|.+.|++|+||||+|+.+.+
T Consensus        51 ~g~lIvLtGlsGSGKSTlAr~La~   74 (630)
T 1x6v_B           51 RGCTVWLTGLSGAGKTTVSMALEE   74 (630)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCEEEEEeCCCCCHHHHHHHHHH
Confidence            467899999999999999999877

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=95.66  E-value=0.0078  Score=47.12  Aligned_cols=24  Identities=17%  Similarity=0.178  Sum_probs=21.3

Q ss_pred             CceEEEEEeCCCCcHHHHHHHHhc
Q 045087           64 QLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        64 ~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ...+++|+|+.|+|||||.+.+..
T Consensus        46 ~Ge~~~llGpsGsGKSTLLr~iaG   69 (390)
T 3gd7_A           46 PGQRVGLLGRTGSGKSTLLSAFLR   69 (390)
T ss_dssp             TTCEEEEEESTTSSHHHHHHHHHT
T ss_pred             CCCEEEEECCCCChHHHHHHHHhC
Confidence            346899999999999999999876

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=95.66  E-value=0.0075  Score=45.47  Aligned_cols=26  Identities=12%  Similarity=0.210  Sum_probs=22.8

Q ss_pred             CCceEEEEEeCCCCcHHHHHHHHhcC
Q 045087           63 PQLSAVTILDSIGLDKTAFAAEAYSS   88 (157)
Q Consensus        63 ~~~~vi~I~G~gGiGKTtLa~~v~~~   88 (157)
                      .....|+|+|.+|+|||||..++...
T Consensus         8 ~~~g~v~ivG~~nvGKSTLin~l~g~   33 (308)
T 3iev_A            8 MKVGYVAIVGKPNVGKSTLLNNLLGT   33 (308)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHTS
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHhCC
Confidence            45689999999999999999988764

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=95.65  E-value=0.0075  Score=42.09  Aligned_cols=25  Identities=16%  Similarity=0.199  Sum_probs=20.8

Q ss_pred             CceEEEEEeCCCCcHHHHHHHHhcC
Q 045087           64 QLSAVTILDSIGLDKTAFAAEAYSS   88 (157)
Q Consensus        64 ~~~vi~I~G~gGiGKTtLa~~v~~~   88 (157)
                      ..--|.|+|.+|+|||||...+...
T Consensus        24 ~~~ki~v~G~~~~GKSsLi~~l~~~   48 (200)
T 2o52_A           24 FLFKFLVIGSAGTGKSCLLHQFIEN   48 (200)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHC-
T ss_pred             cceEEEEECcCCCCHHHHHHHHHhC
Confidence            3557889999999999999988764

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=95.65  E-value=0.011  Score=40.62  Aligned_cols=25  Identities=20%  Similarity=0.033  Sum_probs=21.6

Q ss_pred             CceEEEEEeCCCCcHHHHHHHHhcC
Q 045087           64 QLSAVTILDSIGLDKTAFAAEAYSS   88 (157)
Q Consensus        64 ~~~vi~I~G~gGiGKTtLa~~v~~~   88 (157)
                      +...|.|+|.+|+|||||...+...
T Consensus        15 ~~~~i~v~G~~~~GKssl~~~l~~~   39 (187)
T 1zj6_A           15 QEHKVIIVGLDNAGKTTILYQFSMN   39 (187)
T ss_dssp             SCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred             CccEEEEECCCCCCHHHHHHHHhcC
Confidence            3567899999999999999998853

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=95.64  E-value=0.007  Score=41.92  Aligned_cols=24  Identities=25%  Similarity=0.264  Sum_probs=20.3

Q ss_pred             ceEEEEEeCCCCcHHHHHHHHhcC
Q 045087           65 LSAVTILDSIGLDKTAFAAEAYSS   88 (157)
Q Consensus        65 ~~vi~I~G~gGiGKTtLa~~v~~~   88 (157)
                      ..-|.|+|.+|+|||||...+...
T Consensus        26 ~~ki~vvG~~~~GKSsLi~~l~~~   49 (192)
T 2il1_A           26 KLQVIIIGSRGVGKTSLMERFTDD   49 (192)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHCC-
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcC
Confidence            446889999999999999999764

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=95.64  E-value=0.0064  Score=42.71  Aligned_cols=24  Identities=17%  Similarity=0.084  Sum_probs=20.4

Q ss_pred             ceEEEEEeCCCCcHHHHHHHHhcC
Q 045087           65 LSAVTILDSIGLDKTAFAAEAYSS   88 (157)
Q Consensus        65 ~~vi~I~G~gGiGKTtLa~~v~~~   88 (157)
                      ...|.|+|.+|+|||||...+...
T Consensus         7 ~~ki~vvG~~~~GKTsli~~l~~~   30 (214)
T 2fh5_B            7 QRAVLFVGLCDSGKTLLFVRLLTG   30 (214)
T ss_dssp             -CEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            457889999999999999988764

>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*

Probab=95.63  E-value=0.02  Score=43.81  Aligned_cols=23  Identities=17%  Similarity=0.070  Sum_probs=19.3

Q ss_pred             ceEEEEEeCCCCcHHHHHHHHhc
Q 045087           65 LSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        65 ~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      .+++.+.|-||+||||+|..+..
T Consensus        16 ~~i~~~sgkGGvGKTt~a~~lA~   38 (334)
T 3iqw_A           16 LRWIFVGGKGGVGKTTTSCSLAI   38 (334)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEEeCCCCccHHHHHHHHHH
Confidence            56777889999999999977754

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=95.63  E-value=0.0066  Score=41.85  Aligned_cols=24  Identities=21%  Similarity=0.080  Sum_probs=20.6

Q ss_pred             ceEEEEEeCCCCcHHHHHHHHhcC
Q 045087           65 LSAVTILDSIGLDKTAFAAEAYSS   88 (157)
Q Consensus        65 ~~vi~I~G~gGiGKTtLa~~v~~~   88 (157)
                      ..-|.|+|.+|+|||||...+...
T Consensus        22 ~~ki~v~G~~~~GKSsli~~l~~~   45 (188)
T 1zd9_A           22 EMELTLVGLQYSGKTTFVNVIASG   45 (188)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ccEEEEECCCCCCHHHHHHHHHcC
Confidence            456889999999999999988754

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=95.63  E-value=0.0091  Score=43.99  Aligned_cols=24  Identities=17%  Similarity=0.195  Sum_probs=21.1

Q ss_pred             ceEEEEEeCCCCcHHHHHHHHhcC
Q 045087           65 LSAVTILDSIGLDKTAFAAEAYSS   88 (157)
Q Consensus        65 ~~vi~I~G~gGiGKTtLa~~v~~~   88 (157)
                      ...|+++|.+|+|||||...+...
T Consensus         3 ~~~i~lvG~~g~GKTTL~n~l~g~   26 (271)
T 3k53_A            3 LKTVALVGNPNVGKTTIFNALTGL   26 (271)
T ss_dssp             CEEEEEEECSSSSHHHHHHHHHTT
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCC
Confidence            357899999999999999998764

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=95.63  E-value=0.0066  Score=41.96  Aligned_cols=25  Identities=8%  Similarity=0.088  Sum_probs=21.3

Q ss_pred             CceEEEEEeCCCCcHHHHHHHHhcC
Q 045087           64 QLSAVTILDSIGLDKTAFAAEAYSS   88 (157)
Q Consensus        64 ~~~vi~I~G~gGiGKTtLa~~v~~~   88 (157)
                      ..--|.++|.+|+|||||...+...
T Consensus        22 ~~~ki~~vG~~~~GKSsl~~~l~~~   46 (194)
T 3reg_A           22 KALKIVVVGDGAVGKTCLLLAFSKG   46 (194)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eeeEEEEECcCCCCHHHHHHHHhcC
Confidence            3457889999999999999998764

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=95.63  E-value=0.0083  Score=46.37  Aligned_cols=23  Identities=17%  Similarity=0.140  Sum_probs=20.4

Q ss_pred             ceEEEEEeCCCCcHHHHHHHHhc
Q 045087           65 LSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        65 ~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ..+++|+|+.|.|||||.+.+..
T Consensus       123 ~g~i~I~GptGSGKTTlL~~l~g  145 (356)
T 3jvv_A          123 RGLVLVTGPTGSGKSTTLAAMLD  145 (356)
T ss_dssp             SEEEEEECSTTSCHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHh
Confidence            35999999999999999998865

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=95.62  E-value=0.0076  Score=42.55  Aligned_cols=24  Identities=17%  Similarity=0.102  Sum_probs=20.4

Q ss_pred             ceEEEEEeCCCCcHHHHHHHHhcC
Q 045087           65 LSAVTILDSIGLDKTAFAAEAYSS   88 (157)
Q Consensus        65 ~~vi~I~G~gGiGKTtLa~~v~~~   88 (157)
                      .--|.|+|.+|+|||||...+...
T Consensus        34 ~~ki~vvG~~~vGKSsli~~l~~~   57 (214)
T 2j1l_A           34 SVKVVLVGDGGCGKTSLLMVFADG   57 (214)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHC-
T ss_pred             eEEEEEECcCCCCHHHHHHHHHcC
Confidence            457889999999999999998764

>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*

Probab=95.60  E-value=0.013  Score=49.12  Aligned_cols=42  Identities=12%  Similarity=0.143  Sum_probs=28.0

Q ss_pred             cHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhcC
Q 045087           47 LDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSS   88 (157)
Q Consensus        47 r~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~   88 (157)
                      ....++.|...+..-......|+|+|.+|+|||||..++...
T Consensus        51 l~~~l~~L~~~~~~l~~~~~~V~VvG~~naGKSSLlNaLlg~   92 (695)
T 2j69_A           51 LERDIEDITIASKNLQQGVFRLLVLGDMKRGKSTFLNALIGE   92 (695)
T ss_dssp             CHHHHHHHHHHHHHHHHCCEEEEEECCTTSCHHHHHHHHHTS
T ss_pred             HHHHHHHHHHHHHHhccCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            344445554433221112467999999999999999999865

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=95.60  E-value=0.0094  Score=42.92  Aligned_cols=26  Identities=12%  Similarity=0.184  Sum_probs=22.2

Q ss_pred             CceEEEEEeCCCCcHHHHHHHHhcCc
Q 045087           64 QLSAVTILDSIGLDKTAFAAEAYSSN   89 (157)
Q Consensus        64 ~~~vi~I~G~gGiGKTtLa~~v~~~~   89 (157)
                      ....|+|+|.+|+|||||...+....
T Consensus        28 ~~~~i~lvG~~g~GKStlin~l~g~~   53 (239)
T 3lxx_A           28 SQLRIVLVGKTGAGKSATGNSILGRK   53 (239)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHTSC
T ss_pred             CceEEEEECCCCCCHHHHHHHHcCCC
Confidence            45678999999999999999988743

>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A

Probab=95.59  E-value=0.02  Score=47.40  Aligned_cols=64  Identities=17%  Similarity=0.071  Sum_probs=38.3

Q ss_pred             cHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCCCCCHHHHHHHHH
Q 045087           47 LDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPYTCYADQILDIII  117 (157)
Q Consensus        47 r~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~l~~i~  117 (157)
                      .+.+.+.+...+.     .++..|.|++|.|||+++..+..  .+...-...+.++.........+...+.
T Consensus       182 n~~Q~~av~~~l~-----~~~~li~GppGTGKT~~~~~~i~--~l~~~~~~~ilv~a~tn~A~~~l~~~l~  245 (624)
T 2gk6_A          182 NHSQVYAVKTVLQ-----RPLSLIQGPPGTGKTVTSATIVY--HLARQGNGPVLVCAPSNIAVDQLTEKIH  245 (624)
T ss_dssp             CHHHHHHHHHHHT-----CSEEEEECCTTSCHHHHHHHHHH--HHHTSSSCCEEEEESSHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHhc-----CCCeEEECCCCCCHHHHHHHHHH--HHHHcCCCeEEEEeCcHHHHHHHHHHHH
Confidence            3455555555442     23678999999999988766654  2222123456666555545555555554

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=95.59  E-value=0.0068  Score=41.74  Aligned_cols=25  Identities=24%  Similarity=0.049  Sum_probs=21.3

Q ss_pred             ceEEEEEeCCCCcHHHHHHHHhcCc
Q 045087           65 LSAVTILDSIGLDKTAFAAEAYSSN   89 (157)
Q Consensus        65 ~~vi~I~G~gGiGKTtLa~~v~~~~   89 (157)
                      ..-|.|+|.+|+|||||...+....
T Consensus        21 ~~ki~v~G~~~~GKSsli~~l~~~~   45 (190)
T 2h57_A           21 EVHVLCLGLDNSGKTTIINKLKPSN   45 (190)
T ss_dssp             CEEEEEEECTTSSHHHHHHHTSCGG
T ss_pred             ccEEEEECCCCCCHHHHHHHHhcCC
Confidence            4578899999999999999987643

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=95.59  E-value=0.011  Score=40.79  Aligned_cols=24  Identities=13%  Similarity=0.160  Sum_probs=20.6

Q ss_pred             ceEEEEEeCCCCcHHHHHHHHhcC
Q 045087           65 LSAVTILDSIGLDKTAFAAEAYSS   88 (157)
Q Consensus        65 ~~vi~I~G~gGiGKTtLa~~v~~~   88 (157)
                      ..-|.|+|.+|+|||||...+...
T Consensus         8 ~~ki~vvG~~~~GKSsli~~l~~~   31 (199)
T 2gf0_A            8 DYRVVVFGAGGVGKSSLVLRFVKG   31 (199)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHS
T ss_pred             eeEEEEECCCCCcHHHHHHHHHcC
Confidence            456889999999999999988763

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=95.59  E-value=0.017  Score=45.67  Aligned_cols=34  Identities=9%  Similarity=0.148  Sum_probs=25.5

Q ss_pred             HHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087           51 MEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        51 ~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ...|.+++ .  ....+++|+|+.|.|||||.+.+..
T Consensus       156 ~~~L~~l~-~--~~ggii~I~GpnGSGKTTlL~allg  189 (418)
T 1p9r_A          156 HDNFRRLI-K--RPHGIILVTGPTGSGKSTTLYAGLQ  189 (418)
T ss_dssp             HHHHHHHH-T--SSSEEEEEECSTTSCHHHHHHHHHH
T ss_pred             HHHHHHHH-H--hcCCeEEEECCCCCCHHHHHHHHHh
Confidence            34455543 3  2456899999999999999998866

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=95.58  E-value=0.0073  Score=41.30  Aligned_cols=24  Identities=17%  Similarity=-0.003  Sum_probs=20.8

Q ss_pred             ceEEEEEeCCCCcHHHHHHHHhcC
Q 045087           65 LSAVTILDSIGLDKTAFAAEAYSS   88 (157)
Q Consensus        65 ~~vi~I~G~gGiGKTtLa~~v~~~   88 (157)
                      ..-|.|+|.+|+|||||...+...
T Consensus        21 ~~~i~v~G~~~~GKSsli~~l~~~   44 (181)
T 2h17_A           21 EHKVIIVGLDNAGKTTILYQFSMN   44 (181)
T ss_dssp             CEEEEEEEETTSSHHHHHHHHHTT
T ss_pred             eeEEEEECCCCCCHHHHHHHHhcC
Confidence            457889999999999999998764

>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}

Probab=95.58  E-value=0.011  Score=48.31  Aligned_cols=24  Identities=17%  Similarity=-0.083  Sum_probs=21.3

Q ss_pred             CceEEEEEeCCCCcHHHHHHHHhc
Q 045087           64 QLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        64 ~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ...+|.+.|++|+||||+|+.+..
T Consensus       371 ~~~~I~l~G~~GsGKSTia~~La~  394 (546)
T 2gks_A          371 QGFCVWLTGLPCAGKSTIAEILAT  394 (546)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             cceEEEccCCCCCCHHHHHHHHHH
Confidence            356899999999999999998876

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=95.57  E-value=0.0071  Score=41.60  Aligned_cols=24  Identities=13%  Similarity=0.203  Sum_probs=20.8

Q ss_pred             ceEEEEEeCCCCcHHHHHHHHhcC
Q 045087           65 LSAVTILDSIGLDKTAFAAEAYSS   88 (157)
Q Consensus        65 ~~vi~I~G~gGiGKTtLa~~v~~~   88 (157)
                      ..-|.|+|.+|+|||||...+...
T Consensus        22 ~~ki~vvG~~~~GKSsli~~l~~~   45 (189)
T 2gf9_A           22 MFKLLLIGNSSVGKTSFLFRYADD   45 (189)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eeEEEEECCCCCCHHHHHHHHHcC
Confidence            457889999999999999988764

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=95.57  E-value=0.007  Score=41.77  Aligned_cols=24  Identities=17%  Similarity=0.242  Sum_probs=20.5

Q ss_pred             ceEEEEEeCCCCcHHHHHHHHhcC
Q 045087           65 LSAVTILDSIGLDKTAFAAEAYSS   88 (157)
Q Consensus        65 ~~vi~I~G~gGiGKTtLa~~v~~~   88 (157)
                      .--|.|+|.+|+|||||...+...
T Consensus        21 ~~ki~v~G~~~~GKSsli~~l~~~   44 (191)
T 2a5j_A           21 LFKYIIIGDTGVGKSCLLLQFTDK   44 (191)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECcCCCCHHHHHHHHhcC
Confidence            446889999999999999988764

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=95.57  E-value=0.0072  Score=41.51  Aligned_cols=24  Identities=13%  Similarity=0.202  Sum_probs=20.6

Q ss_pred             ceEEEEEeCCCCcHHHHHHHHhcC
Q 045087           65 LSAVTILDSIGLDKTAFAAEAYSS   88 (157)
Q Consensus        65 ~~vi~I~G~gGiGKTtLa~~v~~~   88 (157)
                      ..-|.|+|.+|+|||||...+...
T Consensus        15 ~~~i~v~G~~~~GKssli~~l~~~   38 (195)
T 1x3s_A           15 TLKILIIGESGVGKSSLLLRFTDD   38 (195)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcC
Confidence            356889999999999999998764

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=95.57  E-value=0.0071  Score=41.60  Aligned_cols=24  Identities=8%  Similarity=0.207  Sum_probs=20.7

Q ss_pred             ceEEEEEeCCCCcHHHHHHHHhcC
Q 045087           65 LSAVTILDSIGLDKTAFAAEAYSS   88 (157)
Q Consensus        65 ~~vi~I~G~gGiGKTtLa~~v~~~   88 (157)
                      ..-|.|+|.+|+|||||...+...
T Consensus        20 ~~ki~v~G~~~~GKSsli~~l~~~   43 (189)
T 1z06_A           20 IFKIIVIGDSNVGKTCLTYRFCAG   43 (189)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             eEEEEEECCCCCCHHHHHHHHHcC
Confidence            457889999999999999988753

>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*

Probab=95.56  E-value=0.039  Score=45.25  Aligned_cols=48  Identities=13%  Similarity=0.045  Sum_probs=34.4

Q ss_pred             CceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCCCC-CHHHHHHH
Q 045087           64 QLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPYTC-YADQILDI  115 (157)
Q Consensus        64 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~-~~~~~l~~  115 (157)
                      +...++|.|..|+|||+|+..+.+.    .+-+.++++.++... ...+++..
T Consensus       231 rGqr~~Ifgg~g~GKT~L~~~ia~~----~~~~v~V~~~iGER~~Ev~e~~~~  279 (600)
T 3vr4_A          231 KGGAAAVPGPFGAGKTVVQHQIAKW----SDVDLVVYVGCGERGNEMTDVVNE  279 (600)
T ss_dssp             TTCEEEEECCTTSCHHHHHHHHHHH----SSCSEEEEEEEEECHHHHHHHHHH
T ss_pred             CCCEEeeecCCCccHHHHHHHHHhc----cCCCEEEEEEecccHHHHHHHHHH
Confidence            3457899999999999999998773    223567888887653 34455544

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=95.56  E-value=0.0065  Score=46.43  Aligned_cols=22  Identities=18%  Similarity=0.279  Sum_probs=20.3

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhc
Q 045087           66 SAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        66 ~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ..++|+|..|.|||||++.+..
T Consensus       172 ~~v~i~G~~GsGKTTll~~l~g  193 (330)
T 2pt7_A          172 KNVIVCGGTGSGKTTYIKSIME  193 (330)
T ss_dssp             CCEEEEESTTSCHHHHHHHGGG
T ss_pred             CEEEEECCCCCCHHHHHHHHhC
Confidence            4899999999999999999977

>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*

Probab=95.55  E-value=0.025  Score=43.41  Aligned_cols=24  Identities=17%  Similarity=0.084  Sum_probs=18.5

Q ss_pred             CceEEEEEeCCCCcHHHHHHHHhc
Q 045087           64 QLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        64 ~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ...++.+.|-||+||||+|..+..
T Consensus        25 ~~~i~v~sgKGGvGKTTvA~~LA~   48 (349)
T 3ug7_A           25 GTKYIMFGGKGGVGKTTMSAATGV   48 (349)
T ss_dssp             SCEEEEEECSSSTTHHHHHHHHHH
T ss_pred             CCEEEEEeCCCCccHHHHHHHHHH
Confidence            445555669999999999977755

>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*

Probab=95.54  E-value=0.014  Score=41.87  Aligned_cols=20  Identities=25%  Similarity=0.287  Sum_probs=17.5

Q ss_pred             EEEEeCCCCcHHHHHHHHhc
Q 045087           68 VTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        68 i~I~G~gGiGKTtLa~~v~~   87 (157)
                      |+|.|-||+||||+|..+..
T Consensus         3 I~vs~kGGvGKTt~a~~LA~   22 (254)
T 3kjh_A            3 LAVAGKGGVGKTTVAAGLIK   22 (254)
T ss_dssp             EEEECSSSHHHHHHHHHHHH
T ss_pred             EEEecCCCCCHHHHHHHHHH
Confidence            66689999999999988866

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=95.54  E-value=0.0077  Score=42.02  Aligned_cols=24  Identities=13%  Similarity=0.232  Sum_probs=20.7

Q ss_pred             ceEEEEEeCCCCcHHHHHHHHhcC
Q 045087           65 LSAVTILDSIGLDKTAFAAEAYSS   88 (157)
Q Consensus        65 ~~vi~I~G~gGiGKTtLa~~v~~~   88 (157)
                      ..-|.|+|.+|+|||||...+...
T Consensus         8 ~~ki~v~G~~~~GKSsli~~l~~~   31 (206)
T 2bcg_Y            8 LFKLLLIGNSGVGKSCLLLRFSDD   31 (206)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHC
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcC
Confidence            457889999999999999988764

>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*

Probab=95.51  E-value=0.0092  Score=44.65  Aligned_cols=26  Identities=12%  Similarity=0.175  Sum_probs=22.7

Q ss_pred             CCceEEEEEeCCCCcHHHHHHHHhcC
Q 045087           63 PQLSAVTILDSIGLDKTAFAAEAYSS   88 (157)
Q Consensus        63 ~~~~vi~I~G~gGiGKTtLa~~v~~~   88 (157)
                      ...+.|+|+|.+|+|||||..++...
T Consensus        22 ~~~~~I~vvG~~~~GKSTlln~l~g~   47 (315)
T 1jwy_B           22 LDLPQIVVVGSQSSGKSSVLENIVGR   47 (315)
T ss_dssp             TCCCEEEEEECSSSSHHHHHHHHHTS
T ss_pred             CCCCeEEEEcCCCCCHHHHHHHHHCC
Confidence            35678999999999999999998764

>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}

Probab=95.50  E-value=0.017  Score=44.61  Aligned_cols=25  Identities=20%  Similarity=0.142  Sum_probs=21.2

Q ss_pred             CCceEEEEE-eCCCCcHHHHHHHHhc
Q 045087           63 PQLSAVTIL-DSIGLDKTAFAAEAYS   87 (157)
Q Consensus        63 ~~~~vi~I~-G~gGiGKTtLa~~v~~   87 (157)
                      .+.++|+|+ |-||+||||+|..+..
T Consensus       141 ~~~kvIav~s~KGGvGKTT~a~nLA~  166 (373)
T 3fkq_A          141 DKSSVVIFTSPCGGVGTSTVAAACAI  166 (373)
T ss_dssp             TSCEEEEEECSSTTSSHHHHHHHHHH
T ss_pred             CCceEEEEECCCCCChHHHHHHHHHH
Confidence            457899999 5999999999987766

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=95.50  E-value=0.0076  Score=41.92  Aligned_cols=25  Identities=8%  Similarity=0.208  Sum_probs=21.0

Q ss_pred             CceEEEEEeCCCCcHHHHHHHHhcC
Q 045087           64 QLSAVTILDSIGLDKTAFAAEAYSS   88 (157)
Q Consensus        64 ~~~vi~I~G~gGiGKTtLa~~v~~~   88 (157)
                      ...-|.|+|.+|+|||||...+...
T Consensus        27 ~~~ki~v~G~~~~GKSsli~~l~~~   51 (199)
T 2p5s_A           27 KAYKIVLAGDAAVGKSSFLMRLCKN   51 (199)
T ss_dssp             -CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred             CCeEEEEECcCCCCHHHHHHHHHhC
Confidence            3567899999999999999988754

>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}

Probab=95.48  E-value=0.0084  Score=41.85  Aligned_cols=23  Identities=13%  Similarity=0.144  Sum_probs=20.0

Q ss_pred             ceEEEEEeCCCCcHHHHHHHHhc
Q 045087           65 LSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        65 ~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ..-+.|.|.+|+||||||..+..
T Consensus        16 G~gvli~G~SGaGKStlal~L~~   38 (181)
T 3tqf_A           16 KMGVLITGEANIGKSELSLALID   38 (181)
T ss_dssp             TEEEEEEESSSSSHHHHHHHHHH
T ss_pred             CEEEEEEcCCCCCHHHHHHHHHH
Confidence            35688999999999999998876

>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A

Probab=95.48  E-value=0.019  Score=40.10  Aligned_cols=20  Identities=10%  Similarity=0.089  Sum_probs=18.4

Q ss_pred             EEEEeCCCCcHHHHHHHHhc
Q 045087           68 VTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        68 i~I~G~gGiGKTtLa~~v~~   87 (157)
                      +.|+|.+|.|||++|.++..
T Consensus         2 ilV~Gg~~SGKS~~A~~la~   21 (180)
T 1c9k_A            2 ILVTGGARSGKSRHAEALIG   21 (180)
T ss_dssp             EEEEECTTSSHHHHHHHHHC
T ss_pred             EEEECCCCCcHHHHHHHHHh
Confidence            67899999999999999886

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=95.47  E-value=0.0084  Score=41.35  Aligned_cols=24  Identities=8%  Similarity=0.102  Sum_probs=20.7

Q ss_pred             ceEEEEEeCCCCcHHHHHHHHhcC
Q 045087           65 LSAVTILDSIGLDKTAFAAEAYSS   88 (157)
Q Consensus        65 ~~vi~I~G~gGiGKTtLa~~v~~~   88 (157)
                      ..-|.++|.+|+|||||...+...
T Consensus        18 ~~ki~v~G~~~~GKssli~~l~~~   41 (194)
T 2atx_A           18 MLKCVVVGDGAVGKTCLLMSYAND   41 (194)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcC
Confidence            357889999999999999988764

>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19

Probab=95.45  E-value=0.041  Score=39.72  Aligned_cols=38  Identities=24%  Similarity=0.134  Sum_probs=26.6

Q ss_pred             cccHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087           45 VGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        45 vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      --++-+.+.+..++...     -+.++|..|.|||.+|..+..
T Consensus        93 ~l~~~Q~~ai~~~~~~~-----~~ll~~~tG~GKT~~a~~~~~  130 (237)
T 2fz4_A           93 SLRDYQEKALERWLVDK-----RGCIVLPTGSGKTHVAMAAIN  130 (237)
T ss_dssp             CCCHHHHHHHHHHTTTS-----EEEEEESSSTTHHHHHHHHHH
T ss_pred             CcCHHHHHHHHHHHhCC-----CEEEEeCCCCCHHHHHHHHHH
Confidence            33556666666555332     277889999999999987766

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=95.45  E-value=0.0093  Score=44.91  Aligned_cols=25  Identities=12%  Similarity=0.121  Sum_probs=21.8

Q ss_pred             CceEEEEEeCCCCcHHHHHHHHhcC
Q 045087           64 QLSAVTILDSIGLDKTAFAAEAYSS   88 (157)
Q Consensus        64 ~~~vi~I~G~gGiGKTtLa~~v~~~   88 (157)
                      +...|+|+|.+|+|||||..++...
T Consensus         6 ~~g~V~ivG~~nvGKSTLln~l~g~   30 (301)
T 1wf3_A            6 YSGFVAIVGKPNVGKSTLLNNLLGV   30 (301)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHTS
T ss_pred             cCCEEEEECCCCCCHHHHHHHHhCC
Confidence            4567999999999999999988764

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=95.45  E-value=0.0088  Score=42.62  Aligned_cols=23  Identities=17%  Similarity=0.234  Sum_probs=20.0

Q ss_pred             ceEEEEEeCCCCcHHHHHHHHhc
Q 045087           65 LSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        65 ~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ..-|.|+|.+|+|||||...+..
T Consensus        37 ~~kVvlvG~~~vGKSSLl~r~~~   59 (211)
T 2g3y_A           37 YYRVVLIGEQGVGKSTLANIFAG   59 (211)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHC
T ss_pred             ceEEEEECCCCCCHHHHHHHHHh
Confidence            45688999999999999988864

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=95.45  E-value=0.0085  Score=41.97  Aligned_cols=24  Identities=8%  Similarity=0.004  Sum_probs=20.7

Q ss_pred             ceEEEEEeCCCCcHHHHHHHHhcC
Q 045087           65 LSAVTILDSIGLDKTAFAAEAYSS   88 (157)
Q Consensus        65 ~~vi~I~G~gGiGKTtLa~~v~~~   88 (157)
                      ..-|.|+|.+|+|||||...+...
T Consensus        25 ~~ki~vvG~~~~GKSsli~~l~~~   48 (207)
T 2fv8_A           25 RKKLVVVGDGACGKTCLLIVFSKD   48 (207)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred             CcEEEEECcCCCCHHHHHHHHhcC
Confidence            356889999999999999988764

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=95.44  E-value=0.0092  Score=46.21  Aligned_cols=23  Identities=9%  Similarity=0.112  Sum_probs=20.8

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhcC
Q 045087           66 SAVTILDSIGLDKTAFAAEAYSS   88 (157)
Q Consensus        66 ~vi~I~G~gGiGKTtLa~~v~~~   88 (157)
                      .+++|+|.+|+|||||...+...
T Consensus       216 ~~~~lvG~sG~GKSTLln~L~g~  238 (358)
T 2rcn_A          216 RISIFAGQSGVGKSSLLNALLGL  238 (358)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHCC
T ss_pred             CEEEEECCCCccHHHHHHHHhcc
Confidence            48999999999999999999874

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=95.43  E-value=0.0088  Score=41.92  Aligned_cols=24  Identities=13%  Similarity=0.021  Sum_probs=20.4

Q ss_pred             ceEEEEEeCCCCcHHHHHHHHhcC
Q 045087           65 LSAVTILDSIGLDKTAFAAEAYSS   88 (157)
Q Consensus        65 ~~vi~I~G~gGiGKTtLa~~v~~~   88 (157)
                      .--|.|+|.+|+|||||...+...
T Consensus         9 ~~ki~i~G~~~~GKTsli~~l~~~   32 (212)
T 2j0v_A            9 FIKCVTVGDGAVGKTCMLICYTSN   32 (212)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcC
Confidence            456889999999999999888754

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=95.42  E-value=0.0085  Score=41.84  Aligned_cols=24  Identities=8%  Similarity=0.272  Sum_probs=20.8

Q ss_pred             ceEEEEEeCCCCcHHHHHHHHhcC
Q 045087           65 LSAVTILDSIGLDKTAFAAEAYSS   88 (157)
Q Consensus        65 ~~vi~I~G~gGiGKTtLa~~v~~~   88 (157)
                      ..-|.|+|.+|+|||||...+...
T Consensus        20 ~~~i~v~G~~~~GKSsli~~l~~~   43 (213)
T 3cph_A           20 IMKILLIGDSGVGKSCLLVRFVED   43 (213)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHC
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhC
Confidence            457889999999999999988754

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=95.41  E-value=0.0094  Score=41.92  Aligned_cols=25  Identities=24%  Similarity=0.251  Sum_probs=21.3

Q ss_pred             CceEEEEEeCCCCcHHHHHHHHhcC
Q 045087           64 QLSAVTILDSIGLDKTAFAAEAYSS   88 (157)
Q Consensus        64 ~~~vi~I~G~gGiGKTtLa~~v~~~   88 (157)
                      ..--|.|+|.+|+|||||...+...
T Consensus        24 ~~~ki~vvG~~~~GKSsLi~~l~~~   48 (217)
T 2f7s_A           24 YLIKLLALGDSGVGKTTFLYRYTDN   48 (217)
T ss_dssp             EEEEEEEESCTTSSHHHHHHHHHCS
T ss_pred             eeEEEEEECcCCCCHHHHHHHHhcC
Confidence            3457889999999999999998764

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=95.41  E-value=0.0089  Score=41.76  Aligned_cols=25  Identities=12%  Similarity=0.146  Sum_probs=21.2

Q ss_pred             CceEEEEEeCCCCcHHHHHHHHhcC
Q 045087           64 QLSAVTILDSIGLDKTAFAAEAYSS   88 (157)
Q Consensus        64 ~~~vi~I~G~gGiGKTtLa~~v~~~   88 (157)
                      ...-|.|+|.+|+|||||...+...
T Consensus        28 ~~~ki~vvG~~~vGKSsli~~l~~~   52 (201)
T 2hup_A           28 FLFKLVLVGDASVGKTCVVQRFKTG   52 (201)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred             cceEEEEECcCCCCHHHHHHHHhhC
Confidence            3567889999999999999988754

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=95.41  E-value=0.024  Score=44.76  Aligned_cols=44  Identities=18%  Similarity=0.259  Sum_probs=32.6

Q ss_pred             cccHHHHHHHHHHHhcC---------CCCceEEEEEeCCCCcHHHHHHHHhcC
Q 045087           45 VGLDDRMEELLDLLIEG---------PPQLSAVTILDSIGLDKTAFAAEAYSS   88 (157)
Q Consensus        45 vGr~~~~~~l~~~L~~~---------~~~~~vi~I~G~gGiGKTtLa~~v~~~   88 (157)
                      .|.++-++.+.+.+...         ......++|+|.+|+|||||...+...
T Consensus       151 ~gv~~L~~~i~~~l~~~~~~~~~~~~~~~~~kvaivG~~gvGKSTLln~l~g~  203 (439)
T 1mky_A          151 INLDTMLETIIKKLEEKGLDLESKPEITDAIKVAIVGRPNVGKSTLFNAILNK  203 (439)
T ss_dssp             BSHHHHHHHHHHHHHHTTCCSSSCCCCCSCEEEEEECSTTSSHHHHHHHHHTS
T ss_pred             CCHHHHHHHHHHhcccccccchhccccccCceEEEECCCCCCHHHHHHHHhCC
Confidence            46677777777666421         123468999999999999999998774

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=95.39  E-value=0.0072  Score=42.65  Aligned_cols=26  Identities=4%  Similarity=-0.018  Sum_probs=22.4

Q ss_pred             CceEEEEEeCCCCcHHHHHHHHhcCc
Q 045087           64 QLSAVTILDSIGLDKTAFAAEAYSSN   89 (157)
Q Consensus        64 ~~~vi~I~G~gGiGKTtLa~~v~~~~   89 (157)
                      ....|+|+|.+|+|||||...+....
T Consensus        28 ~~~~i~v~G~~~~GKSslin~l~~~~   53 (223)
T 4dhe_A           28 VQPEIAFAGRSNAGKSTAINVLCNQK   53 (223)
T ss_dssp             CSCEEEEEESCHHHHHHHHHHHTTCS
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhCCC
Confidence            35678999999999999999998754

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=95.37  E-value=0.0096  Score=41.51  Aligned_cols=24  Identities=13%  Similarity=0.016  Sum_probs=20.6

Q ss_pred             ceEEEEEeCCCCcHHHHHHHHhcC
Q 045087           65 LSAVTILDSIGLDKTAFAAEAYSS   88 (157)
Q Consensus        65 ~~vi~I~G~gGiGKTtLa~~v~~~   88 (157)
                      ..-|.|+|.+|+|||||...+...
T Consensus        25 ~~ki~vvG~~~~GKSsli~~l~~~   48 (201)
T 2gco_A           25 RKKLVIVGDGACGKTCLLIVFSKD   48 (201)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhC
Confidence            346889999999999999988764

>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}

Probab=95.36  E-value=0.015  Score=41.39  Aligned_cols=24  Identities=8%  Similarity=-0.128  Sum_probs=20.8

Q ss_pred             CceEEEEEeCCCCcHHHHHHHHhc
Q 045087           64 QLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        64 ~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ...+|+|+|++|+||+|+|..+-.
T Consensus        10 ~~~II~itGk~~SGKd~va~~l~~   33 (202)
T 3ch4_B           10 PRLVLLFSGKRKSGKDFVTEALQS   33 (202)
T ss_dssp             CSEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCChHHHHHHHHH
Confidence            357999999999999999987754

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=95.36  E-value=0.0054  Score=41.82  Aligned_cols=24  Identities=17%  Similarity=0.195  Sum_probs=10.3

Q ss_pred             ceEEEEEeCCCCcHHHHHHHHhcC
Q 045087           65 LSAVTILDSIGLDKTAFAAEAYSS   88 (157)
Q Consensus        65 ~~vi~I~G~gGiGKTtLa~~v~~~   88 (157)
                      ..-|.|+|.+|+|||||...+.+.
T Consensus         8 ~~ki~v~G~~~~GKssl~~~l~~~   31 (183)
T 2fu5_C            8 LFKLLLIGDSGVGKTCVLFRFSED   31 (183)
T ss_dssp             EEEEEEECCCCC------------
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhC
Confidence            456889999999999999888754

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=95.32  E-value=0.014  Score=42.49  Aligned_cols=25  Identities=12%  Similarity=0.150  Sum_probs=21.4

Q ss_pred             CceEEEEEeCCCCcHHHHHHHHhcC
Q 045087           64 QLSAVTILDSIGLDKTAFAAEAYSS   88 (157)
Q Consensus        64 ~~~vi~I~G~gGiGKTtLa~~v~~~   88 (157)
                      ....|+|+|.+|+|||||...+...
T Consensus        21 ~~~~I~lvG~~g~GKStl~n~l~~~   45 (260)
T 2xtp_A           21 SELRIILVGKTGTGKSAAGNSILRK   45 (260)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHHTS
T ss_pred             CceEEEEECCCCCCHHHHHHHHhCC
Confidence            3567899999999999999888654

>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*

Probab=95.32  E-value=0.013  Score=42.00  Aligned_cols=25  Identities=24%  Similarity=0.246  Sum_probs=21.5

Q ss_pred             CCceEEEEEeCCCCcHHHHHHHHhc
Q 045087           63 PQLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        63 ~~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      .....|+++|.-|+||||+++.+..
T Consensus         7 ~~~~~iglTGgigsGKStv~~~l~~   31 (210)
T 4i1u_A            7 HHMYAIGLTGGIGSGKTTVADLFAA   31 (210)
T ss_dssp             CSCCEEEEECCTTSCHHHHHHHHHH
T ss_pred             cceeEEEEECCCCCCHHHHHHHHHH
Confidence            3567899999999999999997755

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=95.32  E-value=0.0096  Score=42.11  Aligned_cols=24  Identities=13%  Similarity=0.124  Sum_probs=20.6

Q ss_pred             ceEEEEEeCCCCcHHHHHHHHhcC
Q 045087           65 LSAVTILDSIGLDKTAFAAEAYSS   88 (157)
Q Consensus        65 ~~vi~I~G~gGiGKTtLa~~v~~~   88 (157)
                      .--|.|+|.+|+|||||...+...
T Consensus        27 ~~ki~vvG~~~vGKSsL~~~l~~~   50 (214)
T 3q3j_B           27 RCKLVLVGDVQCGKTAMLQVLAKD   50 (214)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEEECcCCCCHHHHHHHHhcC
Confidence            456889999999999999988764

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=95.31  E-value=0.011  Score=45.58  Aligned_cols=23  Identities=13%  Similarity=0.208  Sum_probs=21.3

Q ss_pred             ceEEEEEeCCCCcHHHHHHHHhc
Q 045087           65 LSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        65 ~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ...++|+|..|+|||||.+.+..
T Consensus        71 Gq~~gIiG~nGaGKTTLl~~I~g   93 (347)
T 2obl_A           71 GQRIGIFAGSGVGKSTLLGMICN   93 (347)
T ss_dssp             TCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHhc
Confidence            45899999999999999999988

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=95.29  E-value=0.0086  Score=47.89  Aligned_cols=24  Identities=21%  Similarity=0.176  Sum_probs=21.2

Q ss_pred             CceEEEEEeCCCCcHHHHHHHHhc
Q 045087           64 QLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        64 ~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ...+++|+|..|+|||||++.++.
T Consensus       137 ~Ge~v~IvGpnGsGKSTLlr~L~G  160 (460)
T 2npi_A          137 EGPRVVIVGGSQTGKTSLSRTLCS  160 (460)
T ss_dssp             SCCCEEEEESTTSSHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhC
Confidence            346899999999999999999876

>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}

Probab=95.28  E-value=0.035  Score=42.09  Aligned_cols=22  Identities=27%  Similarity=0.173  Sum_probs=17.5

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhc
Q 045087           66 SAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        66 ~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      .++...|-||+||||+|..+..
T Consensus        15 ~i~v~sgKGGvGKTTvA~~LA~   36 (324)
T 3zq6_A           15 TFVFIGGKGGVGKTTISAATAL   36 (324)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEeCCCCchHHHHHHHHHH
Confidence            4555569999999999977755

>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A

Probab=95.26  E-value=0.024  Score=44.08  Aligned_cols=25  Identities=16%  Similarity=0.038  Sum_probs=21.0

Q ss_pred             CCceEEEEE-eCCCCcHHHHHHHHhc
Q 045087           63 PQLSAVTIL-DSIGLDKTAFAAEAYS   87 (157)
Q Consensus        63 ~~~~vi~I~-G~gGiGKTtLa~~v~~   87 (157)
                      ...++|+|+ |-||+||||+|..+..
T Consensus       106 ~~~~vIav~s~KGGvGKTT~a~nLA~  131 (398)
T 3ez2_A          106 SEAYVIFISNLKGGVSKTVSTVSLAH  131 (398)
T ss_dssp             CSCEEEEECCSSSSSSHHHHHHHHHH
T ss_pred             CCCeEEEEEeCCCCccHHHHHHHHHH
Confidence            457888888 8899999999987766

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=95.25  E-value=0.032  Score=41.24  Aligned_cols=25  Identities=8%  Similarity=0.189  Sum_probs=22.2

Q ss_pred             CceEEEEEeCCCCcHHHHHHHHhcC
Q 045087           64 QLSAVTILDSIGLDKTAFAAEAYSS   88 (157)
Q Consensus        64 ~~~vi~I~G~gGiGKTtLa~~v~~~   88 (157)
                      ....|+|+|.+|+|||||..++...
T Consensus        25 ~~~~i~vvG~~~~GKSSLln~l~g~   49 (299)
T 2aka_B           25 DLPQIAVVGGQSAGKSSVLENFVGR   49 (299)
T ss_dssp             CCCEEEEEEBTTSCHHHHHHHHHTS
T ss_pred             CCCeEEEEeCCCCCHHHHHHHHHCC
Confidence            4678999999999999999999774

>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*

Probab=95.25  E-value=0.011  Score=42.35  Aligned_cols=22  Identities=14%  Similarity=0.187  Sum_probs=18.9

Q ss_pred             EEEEEeCCCCcHHHHHHHHhcC
Q 045087           67 AVTILDSIGLDKTAFAAEAYSS   88 (157)
Q Consensus        67 vi~I~G~gGiGKTtLa~~v~~~   88 (157)
                      -|.|+|-+|+|||+|...+..+
T Consensus        15 KivlvGd~~VGKTsLi~r~~~~   36 (216)
T 4dkx_A           15 KLVFLGEQSVGKTSLITRFMYD   36 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCcCHHHHHHHHHhC
Confidence            4778999999999999887653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	157
d2a5yb3	277	c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenor	1e-10

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 55.6 bits (133), Expect = 1e-10
 Identities = 24/127 (18%), Positives = 43/127 (33%), Gaps = 9/127 (7%)

Query: 40  KSRDTVGLDDRMEELLDLLIEGPPQLSAVTILDSI-GLDKTAFAAEAYSSNYM--KHYFD 96
           K       +  ++ ++  L E     S    L    G  K+  A++A S +       +D
Sbjct: 18  KQMTCYIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYD 77

Query: 97  CHAWVQEPYTCYADQILDIIIKFLMPSSRL------SEIKDKNYEMKKIILHEYLMTKRY 150
              W+++  T             LM  S        S     +  +K++I +  +     
Sbjct: 78  SIVWLKDSGTAPKSTFDLFTDILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNT 137

Query: 151 LIVIDDV 157
           L V DDV
Sbjct: 138 LFVFDDV 144

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	157
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	99.89
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	99.3
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	99.12
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	98.98
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	98.7
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	98.68
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	98.66
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	98.66
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	98.58
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	98.57
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	98.54
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	98.46
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	98.46
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	98.42
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	98.42
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	98.41
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	98.4
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	98.33
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	98.29
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	98.28
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	98.23
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	98.17
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	98.05
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	98.03
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	98.0
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	97.97
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	97.93
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	97.92
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	97.92
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	97.91
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	97.89
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	97.88
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	97.88
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	97.86
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	97.86
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	97.8
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	97.79
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	97.77
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	97.76
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	97.75
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	97.71
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	97.71
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	97.7
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	97.68
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	97.66
d2qy9a2	211	GTPase domain of the signal recognition particle r	97.66
d2jdid3	276	Central domain of beta subunit of F1 ATP synthase	97.66
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	97.65
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	97.63
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	97.59
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	97.59
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	97.59
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	97.56
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	97.56
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	97.54
d1okkd2	207	GTPase domain of the signal recognition particle r	97.54
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	97.53
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	97.51
d1j8yf2	211	GTPase domain of the signal sequence recognition p	97.49
d1ls1a2	207	GTPase domain of the signal sequence recognition p	97.49
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	97.47
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	97.47
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	97.44
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	97.44
d1vmaa2	213	GTPase domain of the signal recognition particle r	97.44
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	97.43
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	97.41
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	97.4
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	97.34
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	97.32
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	97.31
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	97.29
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	97.28
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	97.24
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	97.23
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	97.23
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	97.22
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	97.22
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	97.16
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	97.16
d1fx0a3	276	Central domain of alpha subunit of F1 ATP synthase	97.16
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	97.16
d1ny5a2	247	Transcriptional activator sigm54 (NtrC1), C-termin	97.15
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	97.15
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	97.15
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	97.13
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.13
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	97.11
d2gnoa2	198	gamma subunit of DNA polymerase III, N-domain {The	97.09
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	97.06
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	97.02
d1ihua2	279	Arsenite-translocating ATPase ArsA {Escherichia co	97.01
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	97.01
d1xpua3	289	Transcription termination factor Rho, ATPase domai	97.0
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	96.99
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	96.99
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	96.99
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	96.99
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	96.98
d1ihua1	296	Arsenite-translocating ATPase ArsA {Escherichia co	96.98
d1cp2a_	269	Nitrogenase iron protein {Clostridium pasteurianum	96.97
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	96.97
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	96.95
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	96.85
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	96.84
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	96.84
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	96.73
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	96.73
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	96.69
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	96.67
d2jdia3	285	Central domain of alpha subunit of F1 ATP synthase	96.66
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	96.65
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	96.65
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	96.65
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	96.64
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	96.63
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	96.62
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	96.61
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	96.6
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	96.6
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	96.58
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	96.58
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	96.57
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	96.56
d2afhe1	289	Nitrogenase iron protein {Azotobacter vinelandii [	96.55
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	96.55
d1g2912	240	Maltose transport protein MalK, N-terminal domain	96.55
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	96.55
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	96.5
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	96.48
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	96.47
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	96.47
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	96.47
d2awna2	232	Maltose transport protein MalK, N-terminal domain	96.46
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	96.42
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	96.41
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	96.41
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	96.4
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	96.4
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	96.4
d1hyqa_	232	Cell division regulator MinD {Archaeon Archaeoglob	96.37
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	96.36
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	96.36
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	96.32
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	96.31
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	96.3
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	96.3
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	96.3
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	96.27
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	96.27
d1nrjb_	209	Signal recognition particle receptor beta-subunit	96.27
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	96.26
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	96.26
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	96.21
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	96.21
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	96.19
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	96.18
d1g3qa_	237	Cell division regulator MinD {Archaeon Pyrococcus	96.18
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	96.17
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	96.16
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	96.16
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	96.16
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	96.15
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	96.14
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	96.14
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	96.13
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	96.13
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	96.12
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	96.11
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	96.1
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	96.1
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	96.1
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	96.09
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	96.07
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	96.06
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	96.06
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	96.06
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	96.04
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	96.04
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	96.04
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	96.03
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	95.97
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	95.97
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	95.94
d2fh5b1	207	Signal recognition particle receptor beta-subunit	95.92
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	95.92
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	95.91
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	95.91
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	95.89
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	95.88
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	95.88
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	95.84
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	95.81
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	95.8
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	95.8
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	95.79
d1byia_	224	Dethiobiotin synthetase {Escherichia coli [TaxId:	95.79
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	95.78
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	95.77
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	95.77
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	95.76
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	95.74
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	95.72
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	95.65
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	95.65
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	95.64
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	95.64
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	95.6
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	95.51
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	95.48
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	95.45
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	95.44
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	95.44
d1tuea_	205	Replication protein E1 helicase domain {Human papi	95.41
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	95.34
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	95.31
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	95.19
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	95.15
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	95.06
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	94.9
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	94.88
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	94.84
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	94.76
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	94.7
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	94.57
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	94.33
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	94.32
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	94.26
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	94.2
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	94.16
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	94.01
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	93.91
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	93.62
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	93.55
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	93.53
d1e2ka_	329	Thymidine kinase {Herpes simplex virus type 1, dif	93.51
d1a1va1	136	HCV helicase domain {Human hepatitis C virus (HCV)	93.37
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	92.92
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	92.71
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	92.66
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	92.6
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	92.55
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	92.33
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	92.13
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	92.04
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	91.96
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	91.95
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	91.64
d1g8fa3	122	ATP sulfurylase C-terminal domain {Baker's yeast (	90.43
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	89.83
d2fz4a1	206	DNA repair protein RAD25 {Archaeoglobus fulgidus [	89.49
d1j3ba1	318	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	89.1
d2olra1	313	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	89.01
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	88.67
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	88.34
d1ii2a1	323	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	88.08
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	87.6
d2eyqa3	233	Transcription-repair coupling factor, TRCF {Escher	87.41
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	87.37
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	86.59
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	86.15
d1o5za2	296	Folylpolyglutamate synthetase {Thermotoga maritima	84.95
d1gm5a3	264	RecG helicase domain {Thermotoga maritima [TaxId:	84.77
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	84.73
d1wp9a1	200	putative ATP-dependent RNA helicase PF2015 {Pyroco	84.64
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	83.95
g1qhh.1	623	DEXX box DNA helicase {Bacillus stearothermophilus	83.59
d2gc6a2	296	Folylpolyglutamate synthetase {Lactobacillus casei	83.09
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	82.95
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	82.27
d2p6ra3	202	Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22	82.22
d1yksa1	140	YFV helicase domain {Yellow fever virus [TaxId: 11	81.43
d1j6ua1	89	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	81.28

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.89  E-value=7.7e-23  Score=152.66  Aligned_cols=119  Identities=16%  Similarity=0.164  Sum_probs=89.8

Q ss_pred             CCCCCccccHHHHHHHHHHHhc-CCCCceEEEEEeCCCCcHHHHHHHHhcCcc--cccccCeeEEEEcCCCCCHHHHHHH
Q 045087           39 SKSRDTVGLDDRMEELLDLLIE-GPPQLSAVTILDSIGLDKTAFAAEAYSSNY--MKHYFDCHAWVQEPYTCYADQILDI  115 (157)
Q Consensus        39 ~~~~~~vGr~~~~~~l~~~L~~-~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~--~~~~F~~~~wv~~~~~~~~~~~l~~  115 (157)
                      +....++||+.++++|.++|.. .+....+|+|+||||+||||||+++|++..  ...+|++++|+++++.++...+...
T Consensus        17 p~~~~~~gR~~~~~~i~~~L~~~~~~~~~~v~I~GmgGiGKTtLA~~v~~~~~~~~~~~f~~~~Wv~vs~~~~~~~l~~~   96 (277)
T d2a5yb3          17 PKQMTCYIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLF   96 (277)
T ss_dssp             BCCCCSCCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHH
T ss_pred             CCCCceeCcHHHHHHHHHHHHhccCCCceEEEEECCCCCCHHHHHHHHHHhhhhhhhhcCceEEEEEecCCCCHHHHHHH
Confidence            3556788999999999999965 345678999999999999999999998533  6677999999999998887776665


Q ss_pred             HHHHh---CCCC--CCcc-cccccHHHHHHHHHHHhcCCcEEEEeeCC
Q 045087          116 IIKFL---MPSS--RLSE-IKDKNYEMKKIILHEYLMTKRYLIVIDDV  157 (157)
Q Consensus       116 i~~~l---~~~~--~~~~-~~~~~~~~~~~~l~~~L~~kr~LlVlDdV  157 (157)
                      +...+   ....  ..+. ............+...|.++|||+|||||
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~kr~LlVLDDv  144 (277)
T d2a5yb3          97 TDILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDV  144 (277)
T ss_dssp             HHHHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEE
T ss_pred             HHHHHHHhcchhhcCCccchhhhhHHHHHHHHHHHhccCCeeEecchh
Confidence            54433   2211  1111 22333445556788899999999999996

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=99.30  E-value=5.2e-11  Score=86.04  Aligned_cols=119  Identities=17%  Similarity=0.098  Sum_probs=84.7

Q ss_pred             cCcccCCCCCCccccHHHHHHHHHHHhc----CCCCceEEEEEeCCCCcHHHHHHHHhcCcccccccC-eeEEEEcCCCC
Q 045087           33 AGISSSSKSRDTVGLDDRMEELLDLLIE----GPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFD-CHAWVQEPYTC  107 (157)
Q Consensus        33 ~~~~~~~~~~~~vGr~~~~~~l~~~L~~----~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~-~~~wv~~~~~~  107 (157)
                      ..+++...+..++||+.++++|..+|..    .......+.|+|++|+|||++|+.+++  .+...+. ..+|+......
T Consensus         7 ~~l~~~y~p~~l~~Re~ei~~l~~~l~~~l~~~~~~~~~lll~GppGtGKT~l~~~l~~--~l~~~~~~~~~~~~~~~~~   84 (276)
T d1fnna2           7 SVFSPSYVPKRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWE--LYKDKTTARFVYINGFIYR   84 (276)
T ss_dssp             GGGSTTCCCSCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHH--HHTTSCCCEEEEEETTTCC
T ss_pred             ccCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCCCCceEEECCCCCCHHHHHHHHHH--HHhcccCCcEEEecchhhh
Confidence            3445555667899999999999998853    334567899999999999999999998  5544433 35677777888


Q ss_pred             CHHHHHHHHHHHhCCCCCCcccccccHHHHHHHHHHHhc--CCcEEEEeeC
Q 045087          108 YADQILDIIIKFLMPSSRLSEIKDKNYEMKKIILHEYLM--TKRYLIVIDD  156 (157)
Q Consensus       108 ~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~--~kr~LlVlDd  156 (157)
                      ....++..+.........   ........+...+.+.+.  ....++++|+
T Consensus        85 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  132 (276)
T d1fnna2          85 NFTAIIGEIARSLNIPFP---RRGLSRDEFLALLVEHLRERDLYMFLVLDD  132 (276)
T ss_dssp             SHHHHHHHHHHHTTCCCC---SSCCCHHHHHHHHHHHHHHTTCCEEEEEET
T ss_pred             hhhhhhhhhHHhhhhhhh---hhccchhHHHHHHHHHHhhcccccccchhH
Confidence            888999998888776443   234455666666666553  3445566654

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=99.12  E-value=2.7e-10  Score=82.63  Aligned_cols=118  Identities=14%  Similarity=0.101  Sum_probs=80.0

Q ss_pred             cccCCCCCCccccHHHHHHHHHHHhc----CC---CCceEEEEEeCCCCcHHHHHHHHhcCcccccc------cCeeEEE
Q 045087           35 ISSSSKSRDTVGLDDRMEELLDLLIE----GP---PQLSAVTILDSIGLDKTAFAAEAYSSNYMKHY------FDCHAWV  101 (157)
Q Consensus        35 ~~~~~~~~~~vGr~~~~~~l~~~L~~----~~---~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~------F~~~~wv  101 (157)
                      +.+...++.++||+.++++|.+++..    +.   ....++.++|++|+|||++++.+++  .+.+.      .....++
T Consensus         9 l~~~~~P~~~~~Re~e~~~l~~~l~~~~~~~~~~~~~~~~l~l~GppGtGKT~l~~~l~~--~l~~~~~~~~~~~~~~~~   86 (287)
T d1w5sa2           9 FDENYIPPELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVK--RVSEAAAKEGLTVKQAYV   86 (287)
T ss_dssp             GSTTCCCSSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHH--HHHHHHHHTTCCEEEEEE
T ss_pred             cCCccCCCCCCCHHHHHHHHHHHHHHHHHcCCCCCCcceEEEeECCCCCCHHHHHHHHHH--HHHhhcccccCCceeeee
Confidence            33445678999999999999887632    22   1223456689999999999999998  43322      1345567


Q ss_pred             EcCCCCCHHHHHHHHHHHhCCCCCCcccccccHHHHHHHHHHHh--cCCcEEEEeeCC
Q 045087          102 QEPYTCYADQILDIIIKFLMPSSRLSEIKDKNYEMKKIILHEYL--MTKRYLIVIDDV  157 (157)
Q Consensus       102 ~~~~~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~L--~~kr~LlVlDdV  157 (157)
                      ......+....+..+...+.....   ........+...+...+  .+...++++|.+
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~~iide~  141 (287)
T d1w5sa2          87 NAFNAPNLYTILSLIVRQTGYPIQ---VRGAPALDILKALVDNLYVENHYLLVILDEF  141 (287)
T ss_dssp             EGGGCCSHHHHHHHHHHHHTCCCC---CTTCCHHHHHHHHHHHHHHHTCEEEEEEEST
T ss_pred             ccccccchhhHHHHHhhhcccccc---cccchHHHHHHHHHHHHHhccCccccceeEE
Confidence            777777888888888888876443   23445556666666555  345567777754

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=98.98  E-value=6.5e-10  Score=80.19  Aligned_cols=43  Identities=14%  Similarity=0.187  Sum_probs=36.8

Q ss_pred             CCCCCccccHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087           39 SKSRDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        39 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ...+.|+||++++++|.+.      ..+++.|+|++|+|||+|++++.+
T Consensus         9 ~~~~~f~GR~~el~~l~~~------~~~~i~i~G~~G~GKTsLl~~~~~   51 (283)
T d2fnaa2           9 DNRKDFFDREKEIEKLKGL------RAPITLVLGLRRTGKSSIIKIGIN   51 (283)
T ss_dssp             CSGGGSCCCHHHHHHHHHT------CSSEEEEEESTTSSHHHHHHHHHH
T ss_pred             CChhhCCChHHHHHHHHhc------cCCEEEEEcCCCCcHHHHHHHHHH
Confidence            3568999999999998763      245889999999999999999887

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=98.70  E-value=5e-08  Score=67.86  Aligned_cols=44  Identities=16%  Similarity=0.283  Sum_probs=37.4

Q ss_pred             CCccccHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087           42 RDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        42 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      +.++||+++++++...|....  ..-+.++|.+|+|||+++..++.
T Consensus        22 d~~igRd~Ei~~l~~iL~r~~--k~n~lLvG~pGVGKTalv~~LA~   65 (195)
T d1jbka_          22 DPVIGRDEEIRRTIQVLQRRT--KNNPVLIGEPGVGKTAIVEGLAQ   65 (195)
T ss_dssp             CCCCSCHHHHHHHHHHHTSSS--SCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCCcCcHHHHHHHHHHHhccC--CCCeEEEecCCcccHHHHHHHHH
Confidence            468999999999999998754  23567999999999999988876

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.68  E-value=2.1e-08  Score=70.87  Aligned_cols=46  Identities=15%  Similarity=0.204  Sum_probs=39.6

Q ss_pred             CCCCccccHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087           40 KSRDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        40 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ...+++|.++.++.|.+|+..+.  .+.+.++|++|+||||+|+.+++
T Consensus        12 ~~~divg~~~~~~~L~~~i~~~~--~~~lLl~Gp~G~GKttl~~~la~   57 (227)
T d1sxjc2          12 TLDEVYGQNEVITTVRKFVDEGK--LPHLLFYGPPGTGKTSTIVALAR   57 (227)
T ss_dssp             SGGGCCSCHHHHHHHHHHHHTTC--CCCEEEECSSSSSHHHHHHHHHH
T ss_pred             CHHHccCcHHHHHHHHHHHHcCC--CCeEEEECCCCCChhHHHHHHHH
Confidence            34679999999999999998764  34477999999999999999988

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=98.66  E-value=1.2e-07  Score=69.15  Aligned_cols=44  Identities=18%  Similarity=0.246  Sum_probs=37.2

Q ss_pred             CCccccHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087           42 RDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        42 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ..++||++++++|...|....  ..-+.++|.+|+|||+++..++.
T Consensus        18 d~~igRd~Ei~~l~~iL~r~~--k~n~lLVG~~GvGKTalv~~la~   61 (268)
T d1r6bx2          18 DPLIGREKELERAIQVLCRRR--KNNPLLVGESGVGKTAIAEGLAW   61 (268)
T ss_dssp             CCCCSCHHHHHHHHHHHTSSS--SCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcccChHHHHHHHHHHHhcCc--cCCcEEECCCCCcHHHHHHHHHH
Confidence            468999999999999997654  23566999999999999988876

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.66  E-value=3.7e-08  Score=69.60  Aligned_cols=46  Identities=20%  Similarity=0.248  Sum_probs=39.7

Q ss_pred             CCCCccccHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087           40 KSRDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        40 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ...+++|.++.++.|.+|+..+.  .+.+.++|++|+||||+|+.+.+
T Consensus        13 ~~~d~ig~~~~~~~L~~~~~~~~--~~~~ll~Gp~G~GKTt~a~~la~   58 (224)
T d1sxjb2          13 VLSDIVGNKETIDRLQQIAKDGN--MPHMIISGMPGIGKTTSVHCLAH   58 (224)
T ss_dssp             SGGGCCSCTHHHHHHHHHHHSCC--CCCEEEECSTTSSHHHHHHHHHH
T ss_pred             CHHHhcCCHHHHHHHHHHHHcCC--CCeEEEECCCCCCchhhHHHHHH
Confidence            34679999999999999998764  44577999999999999999887

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=98.58  E-value=4.4e-08  Score=69.39  Aligned_cols=46  Identities=20%  Similarity=0.265  Sum_probs=40.4

Q ss_pred             CCCCccccHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087           40 KSRDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        40 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ...+++|.+..+++|.+|+..+.  .+.+.++|++|+||||+|+.+..
T Consensus        22 ~~~diig~~~~~~~l~~~i~~~~--~~~lll~Gp~G~GKTtla~~iak   67 (231)
T d1iqpa2          22 RLDDIVGQEHIVKRLKHYVKTGS--MPHLLFAGPPGVGKTTAALALAR   67 (231)
T ss_dssp             STTTCCSCHHHHHHHHHHHHHTC--CCEEEEESCTTSSHHHHHHHHHH
T ss_pred             CHHHccCcHHHHHHHHHHHHcCC--CCeEEEECCCCCcHHHHHHHHHH
Confidence            35789999999999999998764  55688999999999999999987

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.57  E-value=1e-07  Score=68.13  Aligned_cols=66  Identities=14%  Similarity=0.039  Sum_probs=48.2

Q ss_pred             CCCccccHHHHHHHHHHHhc---------------CCCCceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCC
Q 045087           41 SRDTVGLDDRMEELLDLLIE---------------GPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPY  105 (157)
Q Consensus        41 ~~~~vGr~~~~~~l~~~L~~---------------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~  105 (157)
                      ..+++|.+..+++|.+||..               +....+.+.++|++|+||||+|+.+++  +..   ...++++.+.
T Consensus        13 ~~dlig~~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~lll~GPpG~GKTt~a~~la~--~~~---~~~~~~~~~~   87 (253)
T d1sxja2          13 LQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQ--ELG---YDILEQNASD   87 (253)
T ss_dssp             GGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHH--HTT---CEEEEECTTS
T ss_pred             HHHhcCCHHHHHHHHHHHHhhhhcchhhhhhhcccCCCCCceEEEECCCCCCHHHHHHHHHH--HHH---hhhhcccccc
Confidence            57899999999999999853               123456899999999999999999998  332   2234555555


Q ss_pred             CCCHHH
Q 045087          106 TCYADQ  111 (157)
Q Consensus       106 ~~~~~~  111 (157)
                      ..+...
T Consensus        88 ~~~~~~   93 (253)
T d1sxja2          88 VRSKTL   93 (253)
T ss_dssp             CCCHHH
T ss_pred             chhhHH
Confidence            544433

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.54  E-value=3.4e-08  Score=69.94  Aligned_cols=46  Identities=15%  Similarity=0.109  Sum_probs=39.3

Q ss_pred             CCCCccccHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087           40 KSRDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        40 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      .-++++|.++.++.|.+|+....  .+.+.++|++|+||||+|+.+++
T Consensus        10 ~~~diig~~~~~~~l~~~i~~~~--~~~lll~Gp~G~GKTtl~~~i~~   55 (237)
T d1sxjd2          10 NLDEVTAQDHAVTVLKKTLKSAN--LPHMLFYGPPGTGKTSTILALTK   55 (237)
T ss_dssp             STTTCCSCCTTHHHHHHHTTCTT--CCCEEEECSTTSSHHHHHHHHHH
T ss_pred             CHHHccCcHHHHHHHHHHHHcCC--CCeEEEECCCCCChHHHHHHHHH
Confidence            34679999999999999997654  44578999999999999999988

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=98.46  E-value=6.4e-07  Score=68.41  Aligned_cols=44  Identities=16%  Similarity=0.359  Sum_probs=35.3

Q ss_pred             CCccccHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087           42 RDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        42 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ..++||+.+++++...|.....+  -+.++|.+|+|||+++..+++
T Consensus        22 d~~~gr~~ei~~~~~~L~r~~k~--n~llvG~~GvGKtaiv~~la~   65 (387)
T d1qvra2          22 DPVIGRDEEIRRVIQILLRRTKN--NPVLIGEPGVGKTAIVEGLAQ   65 (387)
T ss_dssp             CCCCSCHHHHHHHHHHHHCSSCC--CCEEEECTTSCHHHHHHHHHH
T ss_pred             CCCcCcHHHHHHHHHHHhcCCCC--CCeEECCCCCCHHHHHHHHHH
Confidence            45899999999999999865432  346779999999998866655

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=98.46  E-value=1.9e-07  Score=67.60  Aligned_cols=47  Identities=28%  Similarity=0.324  Sum_probs=36.1

Q ss_pred             CCCccccHHHHHHHHHHHh---c-------CCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087           41 SRDTVGLDDRMEELLDLLI---E-------GPPQLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        41 ~~~~vGr~~~~~~l~~~L~---~-------~~~~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ..+++|.++..++|.+.+.   .       +....+-+.++|++|+|||++|+.+.+
T Consensus        11 ~~Di~Gl~~~k~~l~e~v~~~~~~~~~~~~g~~~~~~iLL~GppGtGKT~la~~iA~   67 (256)
T d1lv7a_          11 FADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAG   67 (256)
T ss_dssp             GGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHH
T ss_pred             HHHHhchHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEeeCCCCCCccHHHHHHHH
Confidence            3689999998888876542   1       112345688999999999999999998

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=98.42  E-value=6.4e-07  Score=64.42  Aligned_cols=47  Identities=23%  Similarity=0.360  Sum_probs=35.8

Q ss_pred             CCCccccHHHHHHHHHHHh---c-------CCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087           41 SRDTVGLDDRMEELLDLLI---E-------GPPQLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        41 ~~~~vGr~~~~~~l~~~L~---~-------~~~~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      -.+++|.++..++|.+.+.   .       +....+-+.++|++|+|||+||+++.+
T Consensus         8 ~~di~G~~~~k~~l~~~i~~l~~~~~~~~~g~~~~~giLl~GppGtGKT~la~aia~   64 (247)
T d1ixza_           8 FKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAG   64 (247)
T ss_dssp             GGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHH
T ss_pred             HHHHccHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEecCCCCChhHHHHHHHH
Confidence            3579999998888766542   1       122345688999999999999999998

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=98.42  E-value=6.8e-08  Score=68.63  Aligned_cols=47  Identities=23%  Similarity=0.196  Sum_probs=38.8

Q ss_pred             CCCccccHHHHHHHHHHHhcC---CCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087           41 SRDTVGLDDRMEELLDLLIEG---PPQLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        41 ~~~~vGr~~~~~~l~~~L~~~---~~~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      -++++|.++.+++|..|+...   ....+.+.++|++|+||||+|+.+.+
T Consensus         8 ~~divGqe~~~~~l~~~i~~~~~~~~~~~~~L~~GPpGtGKT~lA~~la~   57 (238)
T d1in4a2           8 LDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIAS   57 (238)
T ss_dssp             GGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHH
T ss_pred             HHHcCChHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHh
Confidence            467999999999999998531   22345678999999999999999988

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=98.41  E-value=1.3e-07  Score=67.22  Aligned_cols=47  Identities=19%  Similarity=0.212  Sum_probs=38.9

Q ss_pred             CCCccccHHHHHHHHHHHhcC---CCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087           41 SRDTVGLDDRMEELLDLLIEG---PPQLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        41 ~~~~vGr~~~~~~l~~~L~~~---~~~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      -+++||.++.+++|..++...   ....+.+.++|++|+||||+|+.+++
T Consensus         8 ~ddivGq~~~~~~L~~~i~~~~~~~~~~~~~Ll~GPpG~GKTtla~~la~   57 (239)
T d1ixsb2           8 LDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAH   57 (239)
T ss_dssp             GGGSCSCHHHHHHHHHHHHHHTTSSSCCCCEEEECCTTSCHHHHHHHHHH
T ss_pred             HHHhCCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHH
Confidence            457899999999999888542   23456788999999999999999987

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.40  E-value=5.3e-07  Score=65.13  Aligned_cols=46  Identities=15%  Similarity=0.249  Sum_probs=36.3

Q ss_pred             CCccccHHHHHHHHHHHh----c-------CCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087           42 RDTVGLDDRMEELLDLLI----E-------GPPQLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        42 ~~~vGr~~~~~~l~~~L~----~-------~~~~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      .++.|.++..++|.+.+.    .       +-...+-+.++|++|+|||++|+++.+
T Consensus         4 ~dv~G~~~~k~~l~~~i~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~l~~ala~   60 (258)
T d1e32a2           4 DDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN   60 (258)
T ss_dssp             GGCCSCSHHHHHHHHHHHHHHHCHHHHHHCCCCCCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             hhhccHHHHHHHHHHHHHHHhcCHHHHHhCCCCCCceeEEecCCCCCchHHHHHHHH
Confidence            568999999999988742    1       112345688999999999999999988

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=98.33  E-value=6.6e-07  Score=64.29  Aligned_cols=52  Identities=19%  Similarity=0.085  Sum_probs=36.2

Q ss_pred             CCCccccHHHHHHHHHHHh-------cCC-CCceEEEEEeCCCCcHHHHHHHHhcCcccccc
Q 045087           41 SRDTVGLDDRMEELLDLLI-------EGP-PQLSAVTILDSIGLDKTAFAAEAYSSNYMKHY   94 (157)
Q Consensus        41 ~~~~vGr~~~~~~l~~~L~-------~~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~   94 (157)
                      ...++|..+.++.+.+-+.       ... ...+-|.++|++|+|||++|+++++  +...+
T Consensus         8 ~~~~i~~~~~i~~i~~~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~la~alA~--~~~~~   67 (246)
T d1d2na_           8 MNGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAE--ESNFP   67 (246)
T ss_dssp             TTCCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHH--HHTCS
T ss_pred             ccCCcCcCHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECcCCCCHHHHHHHHhh--ccccc
Confidence            3458887777766555442       222 2355688999999999999999998  44433

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=98.29  E-value=1.9e-06  Score=60.54  Aligned_cols=60  Identities=18%  Similarity=0.035  Sum_probs=39.8

Q ss_pred             CCcccc--HHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEc
Q 045087           42 RDTVGL--DDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQE  103 (157)
Q Consensus        42 ~~~vGr--~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~  103 (157)
                      ..++|-  +.....+.++..........+.|||.+|+|||.|++++++  +........++++.
T Consensus        11 nF~vg~~N~~a~~~~~~~~~~~~~~~n~l~l~G~~G~GKTHLl~A~~~--~~~~~~~~~~~~~~   72 (213)
T d1l8qa2          11 NFIVGEGNRLAYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGN--EAKKRGYRVIYSSA   72 (213)
T ss_dssp             SCCCCTTTHHHHHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHH--HHHHTTCCEEEEEH
T ss_pred             hccCCCcHHHHHHHHHHHHhCcCCCCCcEEEECCCCCcHHHHHHHHHH--HhccCccceEEech
Confidence            445664  3334555666554433444588999999999999999999  55555555566653

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=98.28  E-value=2.7e-06  Score=60.47  Aligned_cols=46  Identities=24%  Similarity=0.185  Sum_probs=38.5

Q ss_pred             CCCccccHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087           41 SRDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        41 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      -.+++|.++.++.|.+++..+. -...+.++|.+|+||||+|+.+.+
T Consensus        11 ~~dlig~~~~~~~L~~~i~~~~-~~~~~Ll~Gp~G~GKtt~a~~~~~   56 (239)
T d1njfa_          11 FADVVGQEHVLTALANGLSLGR-IHHAYLFSGTRGVGKTSIARLLAK   56 (239)
T ss_dssp             GGGSCSCHHHHHHHHHHHHTTC-CCSEEEEECSTTSSHHHHHHHHHH
T ss_pred             HHHccChHHHHHHHHHHHHcCC-CCeeEEEECCCCCcHHHHHHHHHH
Confidence            4678999999999999997754 234577999999999999998765

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.23  E-value=8.3e-07  Score=64.37  Aligned_cols=52  Identities=25%  Similarity=0.238  Sum_probs=37.3

Q ss_pred             CCCccccHHHHHHHHHHHh----c-------CCCCceEEEEEeCCCCcHHHHHHHHhcCcccccc
Q 045087           41 SRDTVGLDDRMEELLDLLI----E-------GPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHY   94 (157)
Q Consensus        41 ~~~~vGr~~~~~~l~~~L~----~-------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~   94 (157)
                      -.++.|.++..++|.+.+.    .       +-...+-+.++|++|+|||+||++++.  +...+
T Consensus         6 f~di~G~~~~k~~l~~~i~~~l~~~~~~~~~g~~~~~giLL~Gp~GtGKT~l~~ala~--~~~~~   68 (265)
T d1r7ra3           6 WEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIAN--ECQAN   68 (265)
T ss_dssp             CSSCSSSSCCCCHHHHHTHHHHHCHHHHHHCCCCCCCEEEEBCCTTSSHHHHHHHHHH--HTTCE
T ss_pred             HHHhcCHHHHHHHHHHHHHHHhhCHHHHHhCCCCCCCeEEEECCCCCcchhHHHHHHH--HhCCc
Confidence            3567888887777766552    1       223345688999999999999999988  44433

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.17  E-value=5.8e-07  Score=63.92  Aligned_cols=47  Identities=11%  Similarity=0.010  Sum_probs=38.1

Q ss_pred             CCCCccccHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087           40 KSRDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        40 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ..++++|.++..+.|.+++.... ..+.+.++|++|+||||+|+.+++
T Consensus         9 ~~~diig~~~~~~~L~~~~~~~~-~~~~lll~Gp~G~GKTt~~~~la~   55 (252)
T d1sxje2           9 SLNALSHNEELTNFLKSLSDQPR-DLPHLLLYGPNGTGKKTRCMALLE   55 (252)
T ss_dssp             SGGGCCSCHHHHHHHHTTTTCTT-CCCCEEEECSTTSSHHHHHHTHHH
T ss_pred             CHHHccCcHHHHHHHHHHHHcCC-CCCeEEEECCCCCCHHHHHHHHHH
Confidence            34679999999999988876543 344577999999999999999876

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.05  E-value=2.2e-05  Score=56.84  Aligned_cols=98  Identities=19%  Similarity=0.067  Sum_probs=65.9

Q ss_pred             HHHHHHh-cCCCCceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCCCCCHHHHHHHHHHHhCCCCCC-cccc
Q 045087           53 ELLDLLI-EGPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPYTCYADQILDIIIKFLMPSSRL-SEIK  130 (157)
Q Consensus        53 ~l~~~L~-~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~l~~i~~~l~~~~~~-~~~~  130 (157)
                      .|-..|- .+-+..+++-|+|.+|+||||+|..++.  ..+..-...+|+.....++.+.     +++++...+. --..
T Consensus        47 ~lD~~lg~gG~~~g~i~e~~G~~~~GKT~l~l~~~~--~~q~~g~~~vyIDtE~~~~~e~-----a~~~GvD~d~il~~~  119 (269)
T d1mo6a1          47 ALDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVA--NAQAAGGVAAFIDAEHALDPDY-----AKKLGVDTDSLLVSQ  119 (269)
T ss_dssp             HHHHHTSSSSBCSSSEEEEECSSSSSHHHHHHHHHH--HHHHTTCEEEEEESSCCCCHHH-----HHHHTCCGGGCEEEC
T ss_pred             HHHHhhccCCcccceeEEEecCCCcHHHHHHHHHHH--HHhcCCCEEEEEECCccCCHHH-----HHHhCCCHHHeEEec
Confidence            4444443 3446678999999999999999988876  3444445688999988888764     4555543221 0133


Q ss_pred             cccHHHHHHHHHHHhc-CCcEEEEeeCC
Q 045087          131 DKNYEMKKIILHEYLM-TKRYLIVIDDV  157 (157)
Q Consensus       131 ~~~~~~~~~~l~~~L~-~kr~LlVlDdV  157 (157)
                      ..+.++..+.+...+. ++..|||+|.+
T Consensus       120 ~~~~E~~~~~~~~l~~~~~~~liIiDSi  147 (269)
T d1mo6a1         120 PDTGEQALEIADMLIRSGALDIVVIDSV  147 (269)
T ss_dssp             CSSHHHHHHHHHHHHHTTCEEEEEEECS
T ss_pred             CCCHHHHHHHHHHHHhcCCCCEEEEecc
Confidence            4566777777766665 44679999975

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=98.03  E-value=1.6e-05  Score=57.52  Aligned_cols=88  Identities=15%  Similarity=0.047  Sum_probs=61.1

Q ss_pred             CCceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCCCCCHHHHHHHHHHHhCCCCCC-cccccccHHHHHHHH
Q 045087           63 PQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPYTCYADQILDIIIKFLMPSSRL-SEIKDKNYEMKKIIL  141 (157)
Q Consensus        63 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~l~~i~~~l~~~~~~-~~~~~~~~~~~~~~l  141 (157)
                      +..+++-|+|.+|.|||+||..++.  ..++.=..++|+.....++++     +++.++.+.+. --....+.++..+.+
T Consensus        55 p~g~itei~G~~~sGKT~l~l~~~~--~aqk~g~~v~yiDtE~~~~~~-----~a~~~Gvd~d~i~~~~~~~~E~~~~~~  127 (268)
T d1xp8a1          55 PRGRITEIYGPESGGKTTLALAIVA--QAQKAGGTCAFIDAEHALDPV-----YARALGVNTDELLVSQPDNGEQALEIM  127 (268)
T ss_dssp             ETTSEEEEEESTTSSHHHHHHHHHH--HHHHTTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHH
T ss_pred             cCceEEEEecCCccchHHHHHHHHH--HHHhCCCEEEEEECCccCCHH-----HHHHhCCCchhEEEEcCCCHHHHHHHH
Confidence            4567999999999999999988877  333332457899988888875     45666653321 013445667777777


Q ss_pred             HHHhcC-CcEEEEeeCC
Q 045087          142 HEYLMT-KRYLIVIDDV  157 (157)
Q Consensus       142 ~~~L~~-kr~LlVlDdV  157 (157)
                      ..+++. ..-|+|+|.+
T Consensus       128 ~~l~~~~~~~liIiDSi  144 (268)
T d1xp8a1         128 ELLVRSGAIDVVVVDSV  144 (268)
T ss_dssp             HHHHTTTCCSEEEEECT
T ss_pred             HHHHhcCCCcEEEEecc
Confidence            776654 3569999975

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=98.00  E-value=1.7e-06  Score=57.80  Aligned_cols=36  Identities=11%  Similarity=-0.015  Sum_probs=26.9

Q ss_pred             CceEEEEEeCCCCcHHHHHHHHhcCcccccc-cCeeEEE
Q 045087           64 QLSAVTILDSIGLDKTAFAAEAYSSNYMKHY-FDCHAWV  101 (157)
Q Consensus        64 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-F~~~~wv  101 (157)
                      +..+|.++|++|+||||+|+.+..  ++... ++...++
T Consensus         5 ~g~~I~l~G~~GsGKTTia~~La~--~L~~~~~~~~~~~   41 (183)
T d1m8pa3           5 QGFTIFLTGYMNSGKDAIARALQV--TLNQQGGRSVSLL   41 (183)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHH--HHHHHCSSCEEEE
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH--HHhhcCCCchhhh
Confidence            457899999999999999999988  55443 3334443

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=97.97  E-value=1.6e-06  Score=58.12  Aligned_cols=23  Identities=17%  Similarity=0.193  Sum_probs=21.3

Q ss_pred             ceEEEEEeCCCCcHHHHHHHHhc
Q 045087           65 LSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        65 ~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      .+.|.|.|++|+||||||+++..
T Consensus         7 ~K~I~i~G~~GsGKTTla~~La~   29 (192)
T d1lw7a2           7 AKTVAILGGESSGKSVLVNKLAA   29 (192)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            57899999999999999999877

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=97.93  E-value=2.4e-05  Score=56.48  Aligned_cols=98  Identities=17%  Similarity=0.015  Sum_probs=63.4

Q ss_pred             HHHHHHh-cCCCCceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCCCCCHHHHHHHHHHHhCCCCC-Ccccc
Q 045087           53 ELLDLLI-EGPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPYTCYADQILDIIIKFLMPSSR-LSEIK  130 (157)
Q Consensus        53 ~l~~~L~-~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~l~~i~~~l~~~~~-~~~~~  130 (157)
                      .|-..|- .+-+..+++-|+|.+|+||||||..++.  ...+.=...+|+.....++...     +..++.+.+ .--..
T Consensus        41 ~lD~~Lg~GGi~~g~itei~G~~gsGKTtl~l~~~~--~~q~~g~~~vyidtE~~~~~~~-----a~~~Gvd~d~v~~~~  113 (263)
T d1u94a1          41 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIA--AAQREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQ  113 (263)
T ss_dssp             HHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHH--HHHHTTCCEEEEESSCCCCHHH-----HHHTTCCGGGCEEEC
T ss_pred             HHHHHhcCCCccCceEEEEecCCCcHHHHHHHHHHH--HHHcCCCEEEEEccccccCHHH-----HHHhCCCHHHEEEec
Confidence            4444443 2324567999999999999999988877  3444445678999888887643     455554321 10123


Q ss_pred             cccHHHHHHHHHHHhc-CCcEEEEeeCC
Q 045087          131 DKNYEMKKIILHEYLM-TKRYLIVIDDV  157 (157)
Q Consensus       131 ~~~~~~~~~~l~~~L~-~kr~LlVlDdV  157 (157)
                      ..+.++.++.+....+ +..-|+|+|.+
T Consensus       114 ~~~~E~~~~~i~~l~~~~~~~liViDSi  141 (263)
T d1u94a1         114 PDTGEQALEICDALARSGAVDVIVVDSV  141 (263)
T ss_dssp             CSSHHHHHHHHHHHHHHTCCSEEEEECG
T ss_pred             CCCHHHHHHHHHHHHhcCCCCEEEEECc
Confidence            4456777777766664 34468999964

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=97.92  E-value=1.7e-06  Score=56.87  Aligned_cols=22  Identities=9%  Similarity=0.277  Sum_probs=19.7

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhc
Q 045087           66 SAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        66 ~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      +.|.++|++|+||||+|+.+..
T Consensus         3 k~I~l~G~~GsGKSTvak~La~   24 (169)
T d1kaga_           3 RNIFLVGPMGAGKSTIGRQLAQ   24 (169)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            3578889999999999999987

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.92  E-value=1.1e-05  Score=54.55  Aligned_cols=51  Identities=12%  Similarity=0.010  Sum_probs=32.4

Q ss_pred             HHHHHHHHHhc-CCCCceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEE
Q 045087           50 RMEELLDLLIE-GPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQ  102 (157)
Q Consensus        50 ~~~~l~~~L~~-~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~  102 (157)
                      .++.|...... ...+.-+|+|.|.+|+||||||+.+.+  .....+.....++
T Consensus         6 ~~~~~~~~~~~~~~~~~~iIgI~G~~GSGKSTla~~L~~--~l~~~~~~~~~~~   57 (198)
T d1rz3a_           6 RIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQ--TLREQGISVCVFH   57 (198)
T ss_dssp             HHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHH--HHHHTTCCEEEEE
T ss_pred             HHHHHHHHHHhccCCCCEEEEEECCCCCCHHHHHHHHHH--Hhccccccceecc
Confidence            34444444333 334566899999999999999999977  4444433333333

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.91  E-value=2.1e-06  Score=58.38  Aligned_cols=37  Identities=14%  Similarity=-0.102  Sum_probs=27.3

Q ss_pred             CCceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEE
Q 045087           63 PQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWV  101 (157)
Q Consensus        63 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv  101 (157)
                      .+..+|.++|++|+||||+|+.+..  .....+....++
T Consensus        17 ~~g~vI~L~G~pGSGKTTiAk~La~--~l~~~~~~~~~~   53 (195)
T d1x6va3          17 FRGCTVWLTGLSGAGKTTVSMALEE--YLVCHGIPCYTL   53 (195)
T ss_dssp             CCCEEEEEESSCHHHHHHHHHHHHH--HHHHTTCCEEEE
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH--HHHhcCCCccch
Confidence            3457888999999999999999987  454444444443

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=97.89  E-value=3e-06  Score=56.26  Aligned_cols=23  Identities=13%  Similarity=0.156  Sum_probs=21.0

Q ss_pred             ceEEEEEeCCCCcHHHHHHHHhc
Q 045087           65 LSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        65 ~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      .+++.|+|.+|+|||||+.++.+
T Consensus         2 ~Pvi~itG~~GSGKTTL~~~L~~   24 (170)
T d1np6a_           2 IPLLAFAAWSGTGKTTLLKKLIP   24 (170)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHH
Confidence            46899999999999999999976

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=97.88  E-value=1.6e-05  Score=55.80  Aligned_cols=99  Identities=14%  Similarity=-0.006  Sum_probs=59.6

Q ss_pred             HHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCCCCCHHHHHHHHHHHhCCC-------CC
Q 045087           53 ELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPYTCYADQILDIIIKFLMPS-------SR  125 (157)
Q Consensus        53 ~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~l~~i~~~l~~~-------~~  125 (157)
                      .|-+.|..+-+...++.|+|.+|+|||++|.++..  ....+...++|++...+  ...+.... ..++..       ..
T Consensus        14 ~LD~~l~GGi~~gsl~li~G~pGsGKT~l~~qia~--~~~~~~~~~~~is~e~~--~~~~~~~~-~~~~~~~~~~~~~~~   88 (242)
T d1tf7a2          14 RLDEMCGGGFFKDSIILATGATGTGKTLLVSRFVE--NACANKERAILFAYEES--RAQLLRNA-YSWGMDFEEMERQNL   88 (242)
T ss_dssp             HHHHHTTSSEESSCEEEEEECTTSSHHHHHHHHHH--HHHTTTCCEEEEESSSC--HHHHHHHH-HTTSCCHHHHHHTTS
T ss_pred             HHHHhhcCCCcCCeEEEEEeCCCCCHHHHHHHHHH--HHHHhccccceeeccCC--HHHHHHHH-HHcCCChHHHhhcCc
Confidence            34455544445667999999999999999998888  45566667888886543  33333332 222211       00


Q ss_pred             --C--cccccccHHHHHHHHHHHhcC-CcEEEEeeC
Q 045087          126 --L--SEIKDKNYEMKKIILHEYLMT-KRYLIVIDD  156 (157)
Q Consensus       126 --~--~~~~~~~~~~~~~~l~~~L~~-kr~LlVlDd  156 (157)
                        .  .........+....+...+.. +.-++|+|+
T Consensus        89 ~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~vviDs  124 (242)
T d1tf7a2          89 LKIVCAYPESAGLEDHLQIIKSEINDFKPARIAIDS  124 (242)
T ss_dssp             EEECCCCGGGSCHHHHHHHHHHHHHTTCCSEEEEEC
T ss_pred             eEEEEeecchhhHHHHHHHHHHHHHhcCCceeeeec
Confidence              0  001234456666777766644 445778886

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=97.88  E-value=7.1e-06  Score=58.47  Aligned_cols=25  Identities=16%  Similarity=0.197  Sum_probs=22.1

Q ss_pred             CCceEEEEEeCCCCcHHHHHHHHhc
Q 045087           63 PQLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        63 ~~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ...+.|.++|++|+||||||+.++.
T Consensus        30 ~~P~~ilL~GpPGtGKT~la~~la~   54 (273)
T d1gvnb_          30 ESPTAFLLGGQPGSGKTSLRSAIFE   54 (273)
T ss_dssp             SSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHH
Confidence            3456788999999999999999988

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=97.86  E-value=3.8e-06  Score=55.65  Aligned_cols=22  Identities=14%  Similarity=0.144  Sum_probs=20.1

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhc
Q 045087           66 SAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        66 ~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ++|.|+|++|+||||+|+.+..
T Consensus         3 klI~i~G~~GsGKTTva~~L~~   24 (176)
T d2bdta1           3 KLYIITGPAGVGKSTTCKRLAA   24 (176)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5789999999999999998876

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=97.86  E-value=4e-06  Score=54.85  Aligned_cols=22  Identities=18%  Similarity=0.273  Sum_probs=19.6

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhc
Q 045087           66 SAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        66 ~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ++|.|+|++|+||||+|+++..
T Consensus         3 klIii~G~pGsGKTTla~~L~~   24 (152)
T d1ly1a_           3 KIILTIGCPGSGKSTWAREFIA   24 (152)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            4788999999999999998865

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.80  E-value=5.4e-06  Score=55.38  Aligned_cols=23  Identities=22%  Similarity=0.229  Sum_probs=20.5

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhcC
Q 045087           66 SAVTILDSIGLDKTAFAAEAYSS   88 (157)
Q Consensus        66 ~vi~I~G~gGiGKTtLa~~v~~~   88 (157)
                      +.|.|+|.+|+|||||++++...
T Consensus         2 k~v~ItG~~GtGKTtl~~~i~~~   24 (189)
T d2i3ba1           2 RHVFLTGPPGVGKTTLIHKASEV   24 (189)
T ss_dssp             CCEEEESCCSSCHHHHHHHHHHH
T ss_pred             cEEEEECCCCCcHHHHHHHHHHH
Confidence            46899999999999999999773

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=97.79  E-value=3.6e-06  Score=55.92  Aligned_cols=22  Identities=23%  Similarity=0.330  Sum_probs=19.6

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhc
Q 045087           66 SAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        66 ~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      +.|.|+|++|+||||+|+.+..
T Consensus         5 ~~I~i~G~pGsGKTTia~~La~   26 (173)
T d1rkba_           5 PNILLTGTPGVGKTTLGKELAS   26 (173)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4577999999999999999976

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=97.77  E-value=6.4e-06  Score=60.82  Aligned_cols=46  Identities=15%  Similarity=0.185  Sum_probs=34.0

Q ss_pred             CCccccHHHHHHHHHHHhc------------CCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087           42 RDTVGLDDRMEELLDLLIE------------GPPQLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        42 ~~~vGr~~~~~~l~~~L~~------------~~~~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ..++|.++.++.|...+..            .....+-+.++|++|+|||.||+++++
T Consensus        14 ~~ViGQd~A~~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GPpG~GKT~lAkalA~   71 (309)
T d1ofha_          14 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAK   71 (309)
T ss_dssp             TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred             CcccChHHHHHHHHHHHHHHHHHhccCCCCccCCCCceEEEECCCCCCHHHHHHHHhh
Confidence            4578888888888665521            011235677899999999999999988

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=97.76  E-value=7e-06  Score=54.56  Aligned_cols=23  Identities=9%  Similarity=0.004  Sum_probs=21.2

Q ss_pred             ceEEEEEeCCCCcHHHHHHHHhc
Q 045087           65 LSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        65 ~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      .++|.|.|.+|+||||+|+.+.+
T Consensus         3 ~kiI~l~G~~GsGKsTva~~L~~   25 (178)
T d1qhxa_           3 TRMIILNGGSSAGKSGIVRCLQS   25 (178)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999999987

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.75  E-value=5.4e-05  Score=50.99  Aligned_cols=52  Identities=15%  Similarity=0.030  Sum_probs=33.0

Q ss_pred             CceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCCCCCHHHHHHHHHHHhCC
Q 045087           64 QLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPYTCYADQILDIIIKFLMP  122 (157)
Q Consensus        64 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~l~~i~~~l~~  122 (157)
                      ...+|.++|++|+||||+|+.++..  .     ...+++...-.+...+...+-..+..
T Consensus        13 ~p~liil~G~pGsGKST~a~~l~~~--~-----~~~~i~~D~~~~~~~~~~~~~~~l~~   64 (172)
T d1yj5a2          13 NPEVVVAVGFPGAGKSTFIQEHLVS--A-----GYVHVNRDTLGSWQRCVSSCQAALRQ   64 (172)
T ss_dssp             SCCEEEEECCTTSSHHHHHHHHTGG--G-----TCEEEEHHHHCSHHHHHHHHHHHHHT
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHh--c-----CCEEEchHHHHHHHHHHHHHHHHHHC
Confidence            4679999999999999999988762  1     13445543333444454444444443

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.71  E-value=1.4e-05  Score=53.20  Aligned_cols=23  Identities=13%  Similarity=0.075  Sum_probs=21.1

Q ss_pred             ceEEEEEeCCCCcHHHHHHHHhc
Q 045087           65 LSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        65 ~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      .++|.|.|++|+||||+|+.+..
T Consensus         4 g~iI~l~G~~GsGKSTia~~La~   26 (176)
T d1zp6a1           4 GNILLLSGHPGSGKSTIAEALAN   26 (176)
T ss_dssp             TEEEEEEECTTSCHHHHHHHHHT
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999998877

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.71  E-value=1.2e-05  Score=53.40  Aligned_cols=25  Identities=20%  Similarity=0.206  Sum_probs=22.3

Q ss_pred             CCceEEEEEeCCCCcHHHHHHHHhc
Q 045087           63 PQLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        63 ~~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ...+++.|.|++|+||||+|+.+..
T Consensus         4 ~~~~iivl~G~~GsGKsT~a~~La~   28 (171)
T d1knqa_           4 HDHHIYVLMGVSGSGKSAVASEVAH   28 (171)
T ss_dssp             TTSEEEEEECSTTSCHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            3568899999999999999999876

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=97.70  E-value=1.2e-05  Score=53.50  Aligned_cols=25  Identities=24%  Similarity=0.247  Sum_probs=21.7

Q ss_pred             CCceEEEEEeCCCCcHHHHHHHHhc
Q 045087           63 PQLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        63 ~~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ++...|.|.|++|+||||+|+.+.+
T Consensus         3 pk~~~I~i~G~~GsGKTT~~~~La~   27 (174)
T d1y63a_           3 PKGINILITGTPGTGKTSMAEMIAA   27 (174)
T ss_dssp             CSSCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCCEEEEEeCCCCCHHHHHHHHHH
Confidence            3456789999999999999999977

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.68  E-value=6.7e-06  Score=54.91  Aligned_cols=20  Identities=10%  Similarity=0.135  Sum_probs=17.8

Q ss_pred             EEEEeCCCCcHHHHHHHHhc
Q 045087           68 VTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        68 i~I~G~gGiGKTtLa~~v~~   87 (157)
                      |.++|++|+||||+++.++.
T Consensus         4 IvliG~~G~GKSTig~~La~   23 (165)
T d2iyva1           4 AVLVGLPGSGKSTIGRRLAK   23 (165)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            45669999999999999987

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.66  E-value=1.3e-05  Score=55.02  Aligned_cols=23  Identities=9%  Similarity=0.036  Sum_probs=20.7

Q ss_pred             ceEEEEEeCCCCcHHHHHHHHhc
Q 045087           65 LSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        65 ~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ..+|.++|.+|+||||+|+++++
T Consensus         2 p~li~l~GlpgsGKSTla~~L~~   24 (213)
T d1bifa1           2 PTLIVMVGLPARGKTYISKKLTR   24 (213)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            35789999999999999999987

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=97.66  E-value=0.00018  Score=50.05  Aligned_cols=25  Identities=12%  Similarity=0.089  Sum_probs=20.9

Q ss_pred             CCceEEEEEeCCCCcHHHHHHHHhc
Q 045087           63 PQLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        63 ~~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ....++.++|+.|+||||.+-++..
T Consensus         7 ~~p~vi~lvGptGvGKTTTiAKLA~   31 (211)
T d2qy9a2           7 KAPFVILMVGVNGVGKTTTIGKLAR   31 (211)
T ss_dssp             CTTEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHH
Confidence            4568999999999999987776765

>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of beta subunit of F1 ATP synthase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.66  E-value=6.1e-05  Score=54.57  Aligned_cols=92  Identities=13%  Similarity=0.175  Sum_probs=55.8

Q ss_pred             ceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCCCC-CHHHHHHHHHHHhCC--CCCCcc-------cccccH
Q 045087           65 LSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPYTC-YADQILDIIIKFLMP--SSRLSE-------IKDKNY  134 (157)
Q Consensus        65 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~-~~~~~l~~i~~~l~~--~~~~~~-------~~~~~~  134 (157)
                      ...++|.|.+|+|||+|+..+.++. .+.+=+.++++.+++.. ...++...+.+.-..  ......       .+....
T Consensus        68 GQr~~If~~~g~GKt~l~~~i~~~~-~~~~~~v~V~~~iGer~~ev~~~~~~~~~~~~~~~~~~~~~tvvv~~~s~~~~~  146 (276)
T d2jdid3          68 GGKIGLFGGAGVGKTVLIMELINNV-AKAHGGYSVFAGVGERTREGNDLYHEMIESGVINLKDATSKVALVYGQMNEPPG  146 (276)
T ss_dssp             TCEEEEEECTTSSHHHHHHHHHHHH-TTTCSSEEEEEEESCCHHHHHHHHHHHHHHTSSCSSSSCCCEEEEEECTTSCHH
T ss_pred             CCEEEeeCCCCCCHHHHHHHHHHHH-HhhCCCeEEEEEeccChHHHHHHHHHHHhcCccccccccceEEEEEECCCCCHH
Confidence            3468999999999999998887631 22333567888888764 356677777664211  100000       111112


Q ss_pred             H-----HHHHHHHHHhc---CCcEEEEeeCC
Q 045087          135 E-----MKKIILHEYLM---TKRYLIVIDDV  157 (157)
Q Consensus       135 ~-----~~~~~l~~~L~---~kr~LlVlDdV  157 (157)
                      .     ...-.+.++++   ++.+|+++||+
T Consensus       147 ~r~~~~~~a~~iAEyf~~~~G~~VLv~~Dsl  177 (276)
T d2jdid3         147 ARARVALTGLTVAEYFRDQEGQDVLLFIDNI  177 (276)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCSCEEEEEECT
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCeEEEEEcch
Confidence            2     22234556653   78999999995

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=97.65  E-value=1.5e-05  Score=54.34  Aligned_cols=24  Identities=21%  Similarity=0.180  Sum_probs=21.9

Q ss_pred             CceEEEEEeCCCCcHHHHHHHHhc
Q 045087           64 QLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        64 ~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      +..+|.|+|++|+||||+|+.+++
T Consensus         5 kp~iI~i~G~pGSGKsT~a~~La~   28 (194)
T d1qf9a_           5 KPNVVFVLGGPGSGKGTQCANIVR   28 (194)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            567999999999999999999877

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=97.63  E-value=1.3e-05  Score=53.68  Aligned_cols=22  Identities=18%  Similarity=0.178  Sum_probs=20.5

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhc
Q 045087           66 SAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        66 ~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ++|+|.|++|+||||+++.+..
T Consensus         2 kiI~i~G~~GsGKsT~~~~L~~   23 (190)
T d1khta_           2 KVVVVTGVPGVGSTTSSQLAMD   23 (190)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            5899999999999999999876

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=97.59  E-value=5.9e-05  Score=55.70  Aligned_cols=46  Identities=20%  Similarity=0.344  Sum_probs=34.7

Q ss_pred             CCccccHHHHHHHHHHHhc------C-CCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087           42 RDTVGLDDRMEELLDLLIE------G-PPQLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        42 ~~~vGr~~~~~~l~~~L~~------~-~~~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ..++|.++.++.+.+.+..      + .....++.++|++|+|||.||+.+.+
T Consensus        23 ~~v~GQ~~ai~~v~~~i~~~~~~l~~~~kp~~~~lf~Gp~G~GKt~lak~la~   75 (315)
T d1qvra3          23 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAA   75 (315)
T ss_dssp             HHSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHH
T ss_pred             CeEeCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCcchHHHHHHHHHH
Confidence            3578998888888766531      1 12244788899999999999998877

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.59  E-value=2e-05  Score=53.83  Aligned_cols=25  Identities=20%  Similarity=0.230  Sum_probs=22.8

Q ss_pred             CCceEEEEEeCCCCcHHHHHHHHhc
Q 045087           63 PQLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        63 ~~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ++.++|.|.|++|+||||+|+.++.
T Consensus         6 ~~~~iI~i~GppGSGKsT~a~~La~   30 (196)
T d1ukza_           6 DQVSVIFVLGGPGAGKGTQCEKLVK   30 (196)
T ss_dssp             TTCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHH
Confidence            4578999999999999999999977

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=97.59  E-value=8.4e-05  Score=54.98  Aligned_cols=26  Identities=12%  Similarity=-0.013  Sum_probs=21.8

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhcCccccc
Q 045087           66 SAVTILDSIGLDKTAFAAEAYSSNYMKH   93 (157)
Q Consensus        66 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~   93 (157)
                      .++.++|++|+|||.||+.+..  ++..
T Consensus       124 g~~l~~G~pG~GKT~la~ala~--~~~~  149 (321)
T d1w44a_         124 GMVIVTGKGNSGKTPLVHALGE--ALGG  149 (321)
T ss_dssp             EEEEEECSSSSCHHHHHHHHHH--HHHT
T ss_pred             ceEEEECCCCccHHHHHHHHHH--HhcC
Confidence            4666789999999999999998  5543

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=97.56  E-value=1.4e-05  Score=53.21  Aligned_cols=20  Identities=15%  Similarity=0.287  Sum_probs=18.5

Q ss_pred             EEEEeCCCCcHHHHHHHHhc
Q 045087           68 VTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        68 i~I~G~gGiGKTtLa~~v~~   87 (157)
                      |.++||+|+||||+++.+..
T Consensus         3 I~liG~~GsGKsTi~k~La~   22 (161)
T d1viaa_           3 IVFIGFMGSGKSTLARALAK   22 (161)
T ss_dssp             EEEECCTTSCHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            67789999999999999988

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=97.56  E-value=1.2e-05  Score=53.86  Aligned_cols=21  Identities=14%  Similarity=0.180  Sum_probs=18.8

Q ss_pred             EEEEEeCCCCcHHHHHHHHhc
Q 045087           67 AVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        67 vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      .|.++|++|+||||+|+.++.
T Consensus         4 ~Iil~G~~GsGKSTia~~LA~   24 (170)
T d1e6ca_           4 PIFMVGARGCGMTTVGRELAR   24 (170)
T ss_dssp             CEEEESCTTSSHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHH
Confidence            466889999999999999987

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=97.54  E-value=3.8e-05  Score=51.44  Aligned_cols=22  Identities=14%  Similarity=0.114  Sum_probs=20.3

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhc
Q 045087           66 SAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        66 ~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ++|.|.|++|+||||+++.+.+
T Consensus         2 kiivi~G~~GsGKTT~~~~La~   23 (194)
T d1nksa_           2 KIGIVTGIPGVGKSTVLAKVKE   23 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            6788999999999999999987

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=97.54  E-value=0.00023  Score=49.37  Aligned_cols=56  Identities=14%  Similarity=-0.024  Sum_probs=33.3

Q ss_pred             CceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCC-CCCHHHHHHHHHHHhC
Q 045087           64 QLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPY-TCYADQILDIIIKFLM  121 (157)
Q Consensus        64 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~-~~~~~~~l~~i~~~l~  121 (157)
                      +.+++.++|+.|+||||.+-+++..  .+.+=.....++... .....+-++..++.++
T Consensus         5 ~~~vi~lvGptGvGKTTTiaKLA~~--~~~~g~kV~lit~Dt~R~gA~eQL~~~a~~l~   61 (207)
T d1okkd2           5 KGRVVLVVGVNGVGKTTTIAKLGRY--YQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLS   61 (207)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHHHH--HHTTTCCEEEECCCCSSTTHHHHHHHHHHHHT
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHH--HHHCCCcEEEEEeccccccchhhHhhcccccC
Confidence            4679999999999999887767662  222212344555432 2234444444444444

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.53  E-value=2.1e-05  Score=52.33  Aligned_cols=22  Identities=9%  Similarity=0.021  Sum_probs=20.3

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhc
Q 045087           66 SAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        66 ~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ++++|+|..|+|||||+.++..
T Consensus         2 kii~I~G~~gSGKTTli~~l~~   23 (165)
T d1xjca_           2 NVWQVVGYKHSGKTTLMEKWVA   23 (165)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             cEEEEEeCCCCCHHHHHHHHHH
Confidence            5899999999999999998876

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=97.51  E-value=9.9e-05  Score=54.75  Aligned_cols=37  Identities=16%  Similarity=0.136  Sum_probs=29.8

Q ss_pred             HHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087           51 MEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        51 ~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ..+|.+.+.....+..+|+|+|.+|+|||||..++..
T Consensus        40 ~~~ll~~~~~~~~~~~~IgitG~pGaGKSTLi~~l~~   76 (327)
T d2p67a1          40 STQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGM   76 (327)
T ss_dssp             HHHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHH
T ss_pred             HHHHHHHhhhccCCceEEEeeCCCCCCHHHHHHHHHH
Confidence            3455555666566789999999999999999988876

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=97.49  E-value=0.0003  Score=48.93  Aligned_cols=25  Identities=12%  Similarity=0.057  Sum_probs=16.7

Q ss_pred             CCceEEEEEeCCCCcHHHHHHHHhc
Q 045087           63 PQLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        63 ~~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ....++.++|+.|+||||.+-+++.
T Consensus        10 k~p~vi~lvGptGvGKTTTiAKLA~   34 (211)
T d1j8yf2          10 KIPYVIMLVGVQGTGKATTAGKLAY   34 (211)
T ss_dssp             SSSEEEEEECSCCC----HHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHH
Confidence            4578999999999999987766655

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=97.49  E-value=0.00024  Score=49.28  Aligned_cols=24  Identities=21%  Similarity=0.051  Sum_probs=20.2

Q ss_pred             CceEEEEEeCCCCcHHHHHHHHhc
Q 045087           64 QLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        64 ~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      +.+++.++|+.|+||||.+.++..
T Consensus         9 ~~~vi~lvGp~GvGKTTTiaKLA~   32 (207)
T d1ls1a2           9 DRNLWFLVGLQGSGKTTTAAKLAL   32 (207)
T ss_dssp             SSEEEEEECCTTTTHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            457899999999999988777765

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=97.47  E-value=0.0001  Score=54.39  Aligned_cols=46  Identities=15%  Similarity=0.198  Sum_probs=36.3

Q ss_pred             CCccccHHHHHHHHHHHh------c-CCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087           42 RDTVGLDDRMEELLDLLI------E-GPPQLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        42 ~~~vGr~~~~~~l~~~L~------~-~~~~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ..++|.++.++.+...+.      . .+....++.++|++|+|||.||+.+..
T Consensus        22 ~~viGQ~~a~~~v~~~v~~~~~~l~~~~~p~~~~lf~Gp~GvGKT~lak~la~   74 (315)
T d1r6bx3          22 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSK   74 (315)
T ss_dssp             TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CeecChHHHHHHHHHHHHHHHccCCCCCCCceEEEEECCCcchhHHHHHHHHh
Confidence            568999999998877663      1 123345788999999999999999987

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=97.47  E-value=2.6e-05  Score=51.99  Aligned_cols=21  Identities=19%  Similarity=0.295  Sum_probs=19.2

Q ss_pred             EEEEEeCCCCcHHHHHHHHhc
Q 045087           67 AVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        67 vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      -|+|+|.+|+|||||++.+..
T Consensus         2 ki~I~G~~G~GKSTLl~~i~~   22 (178)
T d1ye8a1           2 KIIITGEPGVGKTTLVKKIVE   22 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcHHHHHHHHHHh
Confidence            378999999999999999986

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.44  E-value=0.00018  Score=49.81  Aligned_cols=60  Identities=12%  Similarity=0.030  Sum_probs=39.4

Q ss_pred             HHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhcCccccccc----CeeEEEEcCCCCCHHH
Q 045087           52 EELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYF----DCHAWVQEPYTCYADQ  111 (157)
Q Consensus        52 ~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F----~~~~wv~~~~~~~~~~  111 (157)
                      ..|-++|..+-+...++.|+|.+|+||||||..+.........+    ...+|+.....++...
T Consensus        21 ~~LD~ll~GGi~~G~~~li~G~pGsGKT~l~lq~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~   84 (251)
T d1szpa2          21 KNLDTLLGGGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVR   84 (251)
T ss_dssp             HHHHHHHTSSEESSSEEEEEESTTSSHHHHHHHHTTTTTSCTTTTCCSCEEEEEESSSCCCGGG
T ss_pred             HHHHhhhCCCCcCCeEEEEEcCCCCCHHHHHHHHHHHhhhhhhhccCCceEEEEeecchHHHHH
Confidence            34444454444556799999999999999998886643222222    4577888776665433

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.44  E-value=8.5e-05  Score=55.05  Aligned_cols=38  Identities=18%  Similarity=0.203  Sum_probs=30.2

Q ss_pred             HHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087           50 RMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        50 ~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ...+|...+.....+..+|+|+|+||+|||||..++..
T Consensus        36 ~~~~~~~~~~~~~~~~~~igitG~pGaGKSTli~~l~~   73 (323)
T d2qm8a1          36 AVRDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGS   73 (323)
T ss_dssp             HHHHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHH
T ss_pred             HHHHHHHHhhhccCCceEEeeeCCCCCCHHHHHHHHHH
Confidence            34555556666666789999999999999999988865

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=97.44  E-value=0.00033  Score=48.78  Aligned_cols=25  Identities=12%  Similarity=0.080  Sum_probs=20.5

Q ss_pred             CCceEEEEEeCCCCcHHHHHHHHhc
Q 045087           63 PQLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        63 ~~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ....++.++|+.|+||||.+-+++.
T Consensus         9 ~~p~vi~lvGptGvGKTTTiAKLAa   33 (213)
T d1vmaa2           9 EPPFVIMVVGVNGTGKTTSCGKLAK   33 (213)
T ss_dssp             SSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHH
Confidence            4567999999999999987766665

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.43  E-value=0.00011  Score=51.01  Aligned_cols=38  Identities=5%  Similarity=-0.108  Sum_probs=26.9

Q ss_pred             ceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcC
Q 045087           65 LSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEP  104 (157)
Q Consensus        65 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~  104 (157)
                      ...|+|-|+.|+||||+++.+.+  .+..+-..+.++..+
T Consensus         3 G~lI~ieG~dGsGKsT~~~~L~~--~L~~~g~~v~~~~~p   40 (209)
T d1nn5a_           3 GALIVLEGVDRAGKSTQSRKLVE--ALCAAGHRAELLRFP   40 (209)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHHH--HHHHTTCCEEEEESS
T ss_pred             eeEEEEECCCCCCHHHHHHHHHH--HHHHCCCcEEEEeCC
Confidence            35788999999999999999988  554443233444433

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=97.41  E-value=3.8e-05  Score=52.96  Aligned_cols=23  Identities=17%  Similarity=0.164  Sum_probs=21.2

Q ss_pred             ceEEEEEeCCCCcHHHHHHHHhc
Q 045087           65 LSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        65 ~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      .++|+|.|++|+||||+|+.+.+
T Consensus         3 ~piI~I~GppGSGKgT~ak~La~   25 (225)
T d1ckea_           3 APVITIDGPSGAGKGTLCKAMAE   25 (225)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            46999999999999999998877

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=97.40  E-value=0.00059  Score=50.05  Aligned_cols=81  Identities=10%  Similarity=0.039  Sum_probs=48.0

Q ss_pred             CCceEEEEEeCCCCcHHHHHHHHhcCcccccccC--eeEEEEcCCCCCHHHHHHHHHHHhCCCCCCcccccccHHHHHHH
Q 045087           63 PQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFD--CHAWVQEPYTCYADQILDIIIKFLMPSSRLSEIKDKNYEMKKII  140 (157)
Q Consensus        63 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~--~~~wv~~~~~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~  140 (157)
                      ...-+|+|.|.+|+||||+|+.+..  .+...+.  .+.-++...-+-....+..  ..+......  ....+.+.+.+.
T Consensus        78 k~P~iIGIaG~sgSGKSTla~~L~~--lL~~~~~~~~v~~Is~D~F~~~~~~l~~--~~~~~~~g~--Pes~D~~~L~~~  151 (308)
T d1sq5a_          78 RIPYIISIAGSVAVGKSTTARVLQA--LLSRWPEHRRVELITTDGFLHPNQVLKE--RGLMKKKGF--PESYDMHRLVKF  151 (308)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHH--HHTTSTTCCCEEEEEGGGGBCCHHHHHH--HTCTTCTTS--GGGBCHHHHHHH
T ss_pred             CCCEEEEEeCCCCCCCcHHHHHHHH--HHhhhcCCCceEEEeeeeeECCchHHHH--hcCCccCCc--hHhhhHHHHHHH
Confidence            4567999999999999999998877  4544432  2334444433333333221  122222211  245677788887


Q ss_pred             HHHHhcCCc
Q 045087          141 LHEYLMTKR  149 (157)
Q Consensus       141 l~~~L~~kr  149 (157)
                      |....+++.
T Consensus       152 L~~lk~g~~  160 (308)
T d1sq5a_         152 VSDLKSGVP  160 (308)
T ss_dssp             HHHHTTTCS
T ss_pred             HHHHHcCCC
Confidence            777776653

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.34  E-value=5.8e-05  Score=51.24  Aligned_cols=22  Identities=23%  Similarity=0.175  Sum_probs=20.4

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhc
Q 045087           66 SAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        66 ~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      .+|.|.|++|+||||+|+.+++
T Consensus         2 ~iI~i~GppGSGKsT~a~~La~   23 (194)
T d1teva_           2 LVVFVLGGPGAGKGTQCARIVE   23 (194)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            5789999999999999999887

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=97.32  E-value=6.8e-05  Score=52.08  Aligned_cols=24  Identities=13%  Similarity=0.012  Sum_probs=21.8

Q ss_pred             CceEEEEEeCCCCcHHHHHHHHhc
Q 045087           64 QLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        64 ~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      +..+|-+.|++|.||||||+.+..
T Consensus        23 kg~vIwltGlsGsGKTTia~~L~~   46 (208)
T d1m7ga_          23 RGLTIWLTGLSASGKSTLAVELEH   46 (208)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            567999999999999999999876

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.31  E-value=5.7e-05  Score=52.14  Aligned_cols=22  Identities=9%  Similarity=0.089  Sum_probs=20.2

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhc
Q 045087           66 SAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        66 ~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      -+|+|.|.+|+||||+|+.+.+
T Consensus         3 ~iIgI~G~~gSGKSTla~~L~~   24 (213)
T d1uj2a_           3 FLIGVSGGTASGKSSVCAKIVQ   24 (213)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            4899999999999999998877

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=97.29  E-value=5.7e-05  Score=55.84  Aligned_cols=45  Identities=18%  Similarity=0.178  Sum_probs=33.4

Q ss_pred             CCCCccccHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHh
Q 045087           40 KSRDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAY   86 (157)
Q Consensus        40 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~   86 (157)
                      +-+.++|.+..+..|.-.+...  +...+.++|.+|+||||||+.+.
T Consensus         5 ~f~~I~Gq~~~kral~laa~~~--~~h~vLl~G~pG~GKT~lar~~~   49 (333)
T d1g8pa_           5 PFSAIVGQEDMKLALLLTAVDP--GIGGVLVFGDRGTGKSTAVRALA   49 (333)
T ss_dssp             CGGGSCSCHHHHHHHHHHHHCG--GGCCEEEECCGGGCTTHHHHHHH
T ss_pred             ChhhccCcHHHHHHHHHHHhcc--CCCeEEEECCCCccHHHHHHHHH
Confidence            4567899998777665444321  12358899999999999999874

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.28  E-value=6.3e-05  Score=51.09  Aligned_cols=22  Identities=14%  Similarity=0.321  Sum_probs=19.6

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhc
Q 045087           66 SAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        66 ~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      +.|.|+|++|+|||||++.+..
T Consensus         2 rpIvl~GpsG~GK~tl~~~L~~   23 (186)
T d1gkya_           2 RPIVISGPSGTGKSTLLKKLFA   23 (186)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            4578999999999999999877

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=97.24  E-value=0.00015  Score=54.52  Aligned_cols=43  Identities=19%  Similarity=0.196  Sum_probs=30.2

Q ss_pred             cccHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087           45 VGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        45 vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      .|.+..+-+..+.+..+.++.+.+.++|++|+|||++|..+++
T Consensus       134 ~~~~~~i~~~l~~~~~~~~~~~~~~~~g~~~~gk~~~~~~~~~  176 (362)
T d1svma_         134 PKMDSVVYDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLE  176 (362)
T ss_dssp             TTHHHHHHHHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHhCCCCcCeEEEECCCCCCHHHHHHHHHH
Confidence            3444333333333344555677999999999999999999988

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.23  E-value=8.7e-05  Score=50.50  Aligned_cols=23  Identities=9%  Similarity=0.083  Sum_probs=21.3

Q ss_pred             ceEEEEEeCCCCcHHHHHHHHhc
Q 045087           65 LSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        65 ~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      .++|.|.|++|+||||+|+.+.+
T Consensus         8 ~~iI~l~G~pGSGKsT~a~~La~   30 (194)
T d3adka_           8 SKIIFVVGGPGSGKGTQCEKIVQ   30 (194)
T ss_dssp             SCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            57899999999999999998877

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=97.23  E-value=7e-05  Score=50.72  Aligned_cols=22  Identities=14%  Similarity=-0.062  Sum_probs=19.5

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhc
Q 045087           66 SAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        66 ~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ..|.|.|++|+||||+|+.+.+
T Consensus         4 m~I~i~GppGsGKsT~a~~La~   25 (189)
T d1zaka1           4 LKVMISGAPASGKGTQCELIKT   25 (189)
T ss_dssp             CCEEEEESTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4577999999999999998876

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.22  E-value=7.7e-05  Score=49.90  Aligned_cols=20  Identities=15%  Similarity=0.189  Sum_probs=18.4

Q ss_pred             EEEEeCCCCcHHHHHHHHhc
Q 045087           68 VTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        68 i~I~G~gGiGKTtLa~~v~~   87 (157)
                      |.|.|++|+||||+|+.+..
T Consensus         3 I~i~G~pGSGKsT~a~~La~   22 (182)
T d1zina1           3 LVLMGLPGAGKGTQAEKIVA   22 (182)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            67999999999999998866

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=97.22  E-value=0.00068  Score=47.20  Aligned_cols=60  Identities=18%  Similarity=0.199  Sum_probs=39.0

Q ss_pred             HHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhcCcccc----cccCeeEEEEcCCCCCHHHH
Q 045087           53 ELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSSNYMK----HYFDCHAWVQEPYTCYADQI  112 (157)
Q Consensus        53 ~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~----~~F~~~~wv~~~~~~~~~~~  112 (157)
                      .|-.+|..+-+...++.|+|.+|+|||++|.++..+-...    ......+|+..........+
T Consensus        24 ~LD~ll~GGlp~G~~~li~G~pGsGKT~~~lq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (254)
T d1pzna2          24 SLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERI   87 (254)
T ss_dssp             HHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHH
T ss_pred             HHHHhhcCCccCCEEEEEEcCCCCCHHHHHHHHHHHhhchHHhcCCCceEEEEeccchhHHHHH
Confidence            3444444444567899999999999999998776522111    12345678887776665443

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=97.16  E-value=0.0001  Score=50.90  Aligned_cols=22  Identities=14%  Similarity=0.027  Sum_probs=19.8

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhc
Q 045087           66 SAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        66 ~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      -+|+|-|++|+||||+|+.+..
T Consensus         4 i~IaIdGp~GsGKgT~ak~La~   25 (223)
T d1q3ta_           4 IQIAIDGPASSGKSTVAKIIAK   25 (223)
T ss_dssp             CEEEEECSSCSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            3688999999999999999877

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=97.16  E-value=0.00015  Score=49.11  Aligned_cols=22  Identities=27%  Similarity=0.211  Sum_probs=19.6

Q ss_pred             ceEEEEEeCCCCcHHHHHHHHh
Q 045087           65 LSAVTILDSIGLDKTAFAAEAY   86 (157)
Q Consensus        65 ~~vi~I~G~gGiGKTtLa~~v~   86 (157)
                      .-+|+|+|..|+||||+|..+-
T Consensus         3 p~IIgitG~~gSGKstva~~l~   24 (191)
T d1uf9a_           3 PIIIGITGNIGSGKSTVAALLR   24 (191)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHH
Confidence            5689999999999999998774

>d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]

Probab=97.16  E-value=0.0006  Score=49.25  Aligned_cols=91  Identities=15%  Similarity=0.050  Sum_probs=50.3

Q ss_pred             ceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCCCCC-HHHHHHHHHHHhCCC--------CCCcccccccHH
Q 045087           65 LSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPYTCY-ADQILDIIIKFLMPS--------SRLSEIKDKNYE  135 (157)
Q Consensus        65 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~-~~~~l~~i~~~l~~~--------~~~~~~~~~~~~  135 (157)
                      ...++|.|.+|+|||+|+.....  ....+-..++++.++.... ..++...+...=...        .+.+...-.-..
T Consensus        67 GQr~~Ifg~~g~GKt~l~~~~~~--~~~~~~~v~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~tsd~p~~~r~~a~  144 (276)
T d1fx0a3          67 GQRELIIGDRQTGKTAVATDTIL--NQQGQNVICVYVAIGQKASSVAQVVTNFQERGAMEYTIVVAETADSPATLQYLAP  144 (276)
T ss_dssp             TCBCBEEESSSSSHHHHHHHHHH--TCCTTTCEEEEEEESCCHHHHHHHHHHTGGGTGGGSEEEEEECTTSCGGGTTHHH
T ss_pred             CceEeeccCCCCChHHHHHHHHh--hhcccCceeeeeeecchhHHHHHHHHhhccCCcceeeeecccccCccHHHHHHHH
Confidence            34578899999999999976554  2234445677888776543 334444443321000        000000001111


Q ss_pred             HHHHHHHHHh--cCCcEEEEeeCC
Q 045087          136 MKKIILHEYL--MTKRYLIVIDDV  157 (157)
Q Consensus       136 ~~~~~l~~~L--~~kr~LlVlDdV  157 (157)
                      ...-.+.+++  +++++|+++||+
T Consensus       145 ~~a~tiAEyfrd~G~~Vlll~Dsl  168 (276)
T d1fx0a3         145 YTGAALAEYFMYRERHTLIIYDDL  168 (276)
T ss_dssp             HHHHHHHHHHHHTTCEEEEEEECH
T ss_pred             HHHHHHHHHHHHcCCceeEEeecc
Confidence            3333444444  488999999984

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.16  E-value=7.4e-05  Score=50.95  Aligned_cols=21  Identities=14%  Similarity=0.313  Sum_probs=18.8

Q ss_pred             EEEEEeCCCCcHHHHHHHHhc
Q 045087           67 AVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        67 vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      .|.|+|++|+|||||++.+..
T Consensus         2 pIvl~GPsGsGK~tl~~~L~~   22 (190)
T d1lvga_           2 PVVLSGPSGAGKSTLLKKLFQ   22 (190)
T ss_dssp             CEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            477999999999999999876

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=97.15  E-value=0.00014  Score=51.74  Aligned_cols=45  Identities=20%  Similarity=0.139  Sum_probs=35.0

Q ss_pred             CccccHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087           43 DTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        43 ~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      +|||....++++.+.+..-......|.|+|..|+|||++|+.+++
T Consensus         1 ~~v~~S~~~~~~~~~~~~~a~~~~pvlI~Ge~GtGK~~~A~~ih~   45 (247)
T d1ny5a2           1 EYVFESPKMKEILEKIKKISCAECPVLITGESGVGKEVVARLIHK   45 (247)
T ss_dssp             CCCCCSHHHHHHHHHHHHHTTCCSCEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHH
Confidence            478888888888887754322233578999999999999999976

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.15  E-value=9.8e-05  Score=49.57  Aligned_cols=21  Identities=24%  Similarity=0.197  Sum_probs=18.8

Q ss_pred             EEEEEeCCCCcHHHHHHHHhc
Q 045087           67 AVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        67 vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      .|.|.|++|+||||+|+.++.
T Consensus         2 ~I~i~G~pGsGKsT~a~~La~   22 (181)
T d2cdna1           2 RVLLLGPPGAGKGTQAVKLAE   22 (181)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            367889999999999999877

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.15  E-value=0.00098  Score=48.30  Aligned_cols=85  Identities=6%  Similarity=0.000  Sum_probs=47.2

Q ss_pred             CCCCceEEEEEeCCCCcHHHHHHHHhcCccccccc--C-eeEEEEcCCCCCHHHHHHHHHHHhCCCCC---CcccccccH
Q 045087           61 GPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYF--D-CHAWVQEPYTCYADQILDIIIKFLMPSSR---LSEIKDKNY  134 (157)
Q Consensus        61 ~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F--~-~~~wv~~~~~~~~~~~l~~i~~~l~~~~~---~~~~~~~~~  134 (157)
                      .....-+|+|.|..|+||||||..+..  .+.+.+  . ..+.+++..-+-..+-...+......+..   .......+.
T Consensus        23 ~~~~P~iIGi~G~qGSGKSTl~~~l~~--~L~~~~~~~~~v~~iS~DdfY~t~~~r~~L~~~~~~~pl~~~RG~PgThD~  100 (286)
T d1odfa_          23 GNKCPLFIFFSGPQGSGKSFTSIQIYN--HLMEKYGGEKSIGYASIDDFYLTHEDQLKLNEQFKNNKLLQGRGLPGTHDM  100 (286)
T ss_dssp             TCCSCEEEEEECCTTSSHHHHHHHHHH--HHHHHHGGGSCEEEEEGGGGBCCHHHHHHHHHHTTTCGGGSSSCSTTSBCH
T ss_pred             CCCCCEEEEeECCCCCCHHHHHHHHHH--HHHHHhCCCcceEeeccCCCCCCHHHHHHHhhhccccccceecCCCcchhH
Confidence            334456999999999999999998876  443332  2 34556665533222223344443321100   000245666


Q ss_pred             HHHHHHHHHHhcC
Q 045087          135 EMKKIILHEYLMT  147 (157)
Q Consensus       135 ~~~~~~l~~~L~~  147 (157)
                      +.+.+.|....++
T Consensus       101 ~ll~~~l~~l~~~  113 (286)
T d1odfa_         101 KLLQEVLNTIFNN  113 (286)
T ss_dssp             HHHHHHHHHHTC-
T ss_pred             HHHHHHHHHHHhh
Confidence            6667777766554

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.13  E-value=0.0015  Score=45.28  Aligned_cols=60  Identities=13%  Similarity=0.053  Sum_probs=40.1

Q ss_pred             HHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhcCcc----cccccCeeEEEEcCCCCCHHH
Q 045087           52 EELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSSNY----MKHYFDCHAWVQEPYTCYADQ  111 (157)
Q Consensus        52 ~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~----~~~~F~~~~wv~~~~~~~~~~  111 (157)
                      ..|-++|..+-+...++.|+|.+|+|||++|.++..+..    ....+....|+.....+....
T Consensus        24 ~~LD~~lgGGip~G~~~~i~G~~GsGKT~lalq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (258)
T d1v5wa_          24 QEFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDR   87 (258)
T ss_dssp             HHHHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHH
T ss_pred             HHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHHHHHhhhhcccccceEEEechHHHHHHHH
Confidence            344455544546678999999999999999988864211    122345677777776666443

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=97.13  E-value=0.00013  Score=49.60  Aligned_cols=24  Identities=17%  Similarity=0.228  Sum_probs=20.3

Q ss_pred             CceEEEEEeCCCCcHHHHHHHHhc
Q 045087           64 QLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        64 ~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      +.-.|.|.|++|+||||+|+.+..
T Consensus         5 r~mrIiliG~PGSGKtT~a~~La~   28 (189)
T d2ak3a1           5 RLLRAAIMGAPGSGKGTVSSRITK   28 (189)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             cceeEEEECCCCCCHHHHHHHHHH
Confidence            344667889999999999998887

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=97.11  E-value=0.00013  Score=49.03  Aligned_cols=21  Identities=14%  Similarity=0.164  Sum_probs=19.0

Q ss_pred             EEEEEeCCCCcHHHHHHHHhc
Q 045087           67 AVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        67 vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      .|.|.|++|+||||+|+.++.
T Consensus         2 ~I~i~G~pGSGKsT~a~~La~   22 (182)
T d1s3ga1           2 NIVLMGLPGAGKGTQADRIVE   22 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            367899999999999999887

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: gamma subunit of DNA polymerase III, N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=97.09  E-value=0.0018  Score=44.26  Aligned_cols=36  Identities=11%  Similarity=-0.005  Sum_probs=29.6

Q ss_pred             HHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087           50 RMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        50 ~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      +++-|.+++..+  ....+.++|.+|+|||++|..+.+
T Consensus         2 ~~~~l~~~i~~~--~~~~~l~~G~~g~gk~~~a~~l~~   37 (198)
T d2gnoa2           2 QLETLKRIIEKS--EGISILINGEDLSYPREVSLELPE   37 (198)
T ss_dssp             HHHHHHHHHHTC--SSEEEEEECSSSSHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcC--CCceEEEECCCCCCHHHHHHHHHH
Confidence            456677777655  477899999999999999998877

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=97.06  E-value=0.00034  Score=50.88  Aligned_cols=24  Identities=8%  Similarity=0.109  Sum_probs=18.6

Q ss_pred             CceEEEEEeCCCCcHHHHHHHHhc
Q 045087           64 QLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        64 ~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      +.++|+|.|.+|.||||+|+.+.+
T Consensus         3 k~pIIgIaG~SGSGKTTva~~l~~   26 (288)
T d1a7ja_           3 KHPIISVTGSSGAGTSTVKHTFDQ   26 (288)
T ss_dssp             TSCEEEEESCC---CCTHHHHHHH
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHH
Confidence            567999999999999999998766

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.02  E-value=0.00017  Score=48.53  Aligned_cols=22  Identities=9%  Similarity=0.066  Sum_probs=19.9

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhc
Q 045087           66 SAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        66 ~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ++|.|+|++|+|||||++.+..
T Consensus         3 ~iivl~GpsG~GK~tl~~~L~~   24 (182)
T d1znwa1           3 RVVVLSGPSAVGKSTVVRCLRE   24 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHh
Confidence            5788999999999999998866

>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=97.01  E-value=0.00056  Score=48.70  Aligned_cols=35  Identities=20%  Similarity=0.297  Sum_probs=25.2

Q ss_pred             HHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087           51 MEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        51 ~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      +..+.+.+..  +..++|.+.|-||+||||+|..+..
T Consensus         8 ~~~~~~~~~~--~~~~iii~sGKGGVGKTT~a~nLA~   42 (279)
T d1ihua2           8 LSALVDDIAR--NEHGLIMLMGKGGVGKTTMAAAIAV   42 (279)
T ss_dssp             HHHHHHHHHT--TSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             HHHHHHHhhc--CCCEEEEEECCCCCCHHHHHHHHHH
Confidence            3445555543  3578999999999999998766644

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.01  E-value=0.00018  Score=48.64  Aligned_cols=22  Identities=9%  Similarity=0.279  Sum_probs=20.1

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhc
Q 045087           66 SAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        66 ~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      +.|.|+|++|+|||||++++..
T Consensus         4 k~ivl~Gpsg~GK~tl~~~L~~   25 (178)
T d1kgda_           4 KTLVLLGAHGVGRRHIKNTLIT   25 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcEEEECCCCCCHHHHHHHHHH
Confidence            5788999999999999998886

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=97.00  E-value=0.00014  Score=52.88  Aligned_cols=35  Identities=20%  Similarity=0.044  Sum_probs=26.4

Q ss_pred             HHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhcC
Q 045087           53 ELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSS   88 (157)
Q Consensus        53 ~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~   88 (157)
                      ++++.|..-. +...++|.|..|+|||+|+..+.++
T Consensus        32 r~ID~l~Pig-rGQr~~I~g~~g~GKT~l~~~i~~~   66 (289)
T d1xpua3          32 RVLDLASPIG-RGQRGLIVAPPKAGKTMLLQNIAQS   66 (289)
T ss_dssp             HHHHHHSCCB-TTCEEEEEECSSSSHHHHHHHHHHH
T ss_pred             eeeeeccccc-CCCeeeEeCCCCCCHHHHHHHHHHH
Confidence            4566665432 3457899999999999999988873

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.99  E-value=0.0011  Score=44.52  Aligned_cols=35  Identities=23%  Similarity=0.146  Sum_probs=25.7

Q ss_pred             HHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087           53 ELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        53 ~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      .|-++|..+-....++.|+|.+|+|||+||..+..
T Consensus        11 ~LD~ll~GGi~~G~v~~i~G~~GsGKT~l~l~la~   45 (242)
T d1n0wa_          11 ELDKLLQGGIETGSITEMFGEFRTGKTQICHTLAV   45 (242)
T ss_dssp             HHHHHTTTSEETTSEEEEECCTTSSHHHHHHHHHH
T ss_pred             HHHHhhcCCCcCCEEEEEEeCCCCCHHHHHHHHHH
Confidence            34444433334567999999999999999987765

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=96.99  E-value=0.0003  Score=52.84  Aligned_cols=46  Identities=15%  Similarity=0.130  Sum_probs=33.6

Q ss_pred             CCccccHHHHHHHHHHHh----------------------------cCCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087           42 RDTVGLDDRMEELLDLLI----------------------------EGPPQLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        42 ~~~vGr~~~~~~l~~~L~----------------------------~~~~~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ..+||.++.++.+...+.                            ..+....-+..+|+.|+|||-||+.+..
T Consensus        17 ~~ViGQd~Akkava~Avrn~~rR~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~niLfiGPTGvGKTElAk~LA~   90 (364)
T d1um8a_          17 NYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAK   90 (364)
T ss_dssp             TTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred             CeecChHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccCCCcceeeeCCCCccHHHHHHHHHh
Confidence            568899888887764441                            1122345588889999999999998866

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=96.99  E-value=0.00019  Score=48.06  Aligned_cols=21  Identities=14%  Similarity=0.011  Sum_probs=18.6

Q ss_pred             EEEEEeCCCCcHHHHHHHHhc
Q 045087           67 AVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        67 vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      .|.|.|++|+||||+|+.++.
T Consensus         2 ~I~i~G~pGSGKsT~~~~La~   22 (179)
T d1e4va1           2 RIILLGAPVAGKGTQAQFIME   22 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            367899999999999998876

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=96.99  E-value=0.00022  Score=48.17  Aligned_cols=22  Identities=27%  Similarity=0.279  Sum_probs=18.7

Q ss_pred             ceEEEEEeCCCCcHHHHHHHHhc
Q 045087           65 LSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        65 ~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      .++| |.|++|+||||+|+.+..
T Consensus         4 ~rii-l~G~pGSGKsT~a~~La~   25 (190)
T d1ak2a1           4 VRAV-LLGPPGAGKGTQAPKLAK   25 (190)
T ss_dssp             CEEE-EECCTTSSHHHHHHHHHH
T ss_pred             cEEE-EECCCCCCHHHHHHHHHH
Confidence            4455 789999999999998876

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=96.98  E-value=0.00023  Score=48.14  Aligned_cols=25  Identities=28%  Similarity=0.223  Sum_probs=21.5

Q ss_pred             CCceEEEEEeCCCCcHHHHHHHHhc
Q 045087           63 PQLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        63 ~~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      .+..+|+|-|..|+||||+++.+.+
T Consensus         7 ~kp~~I~ieG~~GsGKTTl~~~L~~   31 (197)
T d2vp4a1           7 TQPFTVLIEGNIGSGKTTYLNHFEK   31 (197)
T ss_dssp             CCCEEEEEECSTTSCHHHHHHTTGG
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHH
Confidence            3456899999999999999998766

>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=96.98  E-value=0.00043  Score=49.56  Aligned_cols=24  Identities=13%  Similarity=0.051  Sum_probs=20.0

Q ss_pred             CceEEEEEeCCCCcHHHHHHHHhc
Q 045087           64 QLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        64 ~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ..+++.+.|-||+||||+|..+..
T Consensus         7 ~p~~i~~sGKGGVGKTTvaa~lA~   30 (296)
T d1ihua1           7 IPPYLFFTGKGGVGKTSISCATAI   30 (296)
T ss_dssp             CCSEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCcChHHHHHHHHHH
Confidence            367888999999999998876655

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

Probab=96.97  E-value=0.00024  Score=50.60  Aligned_cols=22  Identities=23%  Similarity=0.249  Sum_probs=19.6

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhc
Q 045087           66 SAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        66 ~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      +.|+|+|-||+||||+|..+..
T Consensus         2 r~Iai~gKGGvGKTT~a~nLA~   23 (269)
T d1cp2a_           2 RQVAIYGKGGIGKSTTTQNLTS   23 (269)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCcCCHHHHHHHHHH
Confidence            6789999999999999977766

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=96.97  E-value=0.0013  Score=44.92  Aligned_cols=36  Identities=11%  Similarity=0.058  Sum_probs=25.6

Q ss_pred             ceEEEEEeCCCCcHHHHHHHHhcCcccccc-cCeeEEEE
Q 045087           65 LSAVTILDSIGLDKTAFAAEAYSSNYMKHY-FDCHAWVQ  102 (157)
Q Consensus        65 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-F~~~~wv~  102 (157)
                      .+.|+|-|+.|+||||+++.+.+  .+... +....+..
T Consensus         2 gkfIviEG~dGsGKsT~~~~L~~--~L~~~g~~~~~~~~   38 (210)
T d4tmka_           2 SKYIVIEGLEGAGKTTARNVVVE--TLEQLGIRDMVFTR   38 (210)
T ss_dssp             CCEEEEEECTTSCHHHHHHHHHH--HHHHTTCCCEEEEE
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH--HHHhCCCCeEEEec
Confidence            35788999999999999999887  44433 33344433

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.95  E-value=0.00019  Score=48.13  Aligned_cols=20  Identities=15%  Similarity=0.195  Sum_probs=17.8

Q ss_pred             EEEEeCCCCcHHHHHHHHhc
Q 045087           68 VTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        68 i~I~G~gGiGKTtLa~~v~~   87 (157)
                      |.|.|++|+||||+|+.+..
T Consensus         5 Ivl~G~pGSGKtT~a~~La~   24 (180)
T d1akya1           5 MVLIGPPGAGKGTQAPNLQE   24 (180)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            55779999999999999977

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=96.85  E-value=0.00053  Score=52.74  Aligned_cols=75  Identities=13%  Similarity=0.162  Sum_probs=45.7

Q ss_pred             CCccccHHHHHHHHHHHhc--------C----CCCceEEEEEeCCCCcHHHHHHHHhcCccccccc---CeeEEEEcC-C
Q 045087           42 RDTVGLDDRMEELLDLLIE--------G----PPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYF---DCHAWVQEP-Y  105 (157)
Q Consensus        42 ~~~vGr~~~~~~l~~~L~~--------~----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F---~~~~wv~~~-~  105 (157)
                      ..+||.++..+.|--.+.+        .    +-...-|.++|++|+|||.||+.++.  .+.-.|   ++.-|...+ -
T Consensus        14 ~yVvGQ~~AKk~lsvav~nhyrR~~~~~~~~~ei~ksNILliGPTGvGKTlLAr~LAk--~l~VPFv~~daT~fTeaGYv   91 (443)
T d1g41a_          14 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAK--LANAPFIKVEATKFTEVGYV   91 (443)
T ss_dssp             TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHH--HTTCCEEEEEGGGGC----C
T ss_pred             CcccCcHHHHHHHHHHHHHHHHHhhcccccccccccccEEEECCCCCCHHHHHHHHHH--HhCCCEEEeecceeeeccee
Confidence            4678888888777665531        1    11234688999999999999999988  454444   111121111 1


Q ss_pred             CCCHHHHHHHHHH
Q 045087          106 TCYADQILDIIIK  118 (157)
Q Consensus       106 ~~~~~~~l~~i~~  118 (157)
                      ..+.+.++.+++.
T Consensus        92 G~DVesii~~L~~  104 (443)
T d1g41a_          92 GKEVDSIIRDLTD  104 (443)
T ss_dssp             CCCTHHHHHHHHH
T ss_pred             ecchhHHHHHHHH
Confidence            1355666666654

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=96.84  E-value=0.00095  Score=45.89  Aligned_cols=41  Identities=20%  Similarity=0.145  Sum_probs=31.6

Q ss_pred             ccHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087           46 GLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        46 Gr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      +.+...++|.+.+..+. -...+.++|++|+||||+|+.+..
T Consensus         6 w~~~~~~~l~~~~~~~~-l~h~lLl~Gp~G~GKtt~a~~~a~   46 (207)
T d1a5ta2           6 WLRPDFEKLVASYQAGR-GHHALLIQALPGMGDDALIYALSR   46 (207)
T ss_dssp             GGHHHHHHHHHHHHTTC-CCSEEEEECCTTSCHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHcCC-cCeEEEEECCCCCcHHHHHHHHHH
Confidence            45566788888887654 234588999999999999997765

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=96.84  E-value=0.0003  Score=48.89  Aligned_cols=21  Identities=24%  Similarity=0.276  Sum_probs=19.4

Q ss_pred             EEEEEeCCCCcHHHHHHHHhc
Q 045087           67 AVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        67 vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ||.|+|+.|.|||||..++.+
T Consensus         2 vi~v~G~~GsGKTTLl~~ll~   22 (244)
T d1yrba1           2 IVVFVGTAGSGKTTLTGEFGR   22 (244)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEcCCCCcHHHHHHHHHH
Confidence            789999999999999998875

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.73  E-value=0.00086  Score=47.12  Aligned_cols=23  Identities=17%  Similarity=0.096  Sum_probs=20.7

Q ss_pred             ceEEEEEeCCCCcHHHHHHHHhc
Q 045087           65 LSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        65 ~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ..+++|+|.+|+|||||.+.+..
T Consensus        31 Ge~~~iiG~sGsGKSTLl~~i~g   53 (230)
T d1l2ta_          31 GEFVSIMGPSGSGKSTMLNIIGC   53 (230)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTT
T ss_pred             CCEEEEECCCCCCcchhhHhccC
Confidence            45899999999999999998866

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=96.73  E-value=0.0025  Score=44.96  Aligned_cols=22  Identities=14%  Similarity=0.184  Sum_probs=18.8

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhc
Q 045087           66 SAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        66 ~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      .+..|+|.+|+||||||..++-
T Consensus        30 ~~~~i~G~~G~GKS~l~l~la~   51 (274)
T d1nlfa_          30 TVGALVSPGGAGKSMLALQLAA   51 (274)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHH
T ss_pred             cEEEEEeCCCCCHHHHHHHHHH
Confidence            4778999999999999977654

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=96.69  E-value=0.00091  Score=44.04  Aligned_cols=33  Identities=15%  Similarity=0.018  Sum_probs=24.0

Q ss_pred             HHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhcC
Q 045087           55 LDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSS   88 (157)
Q Consensus        55 ~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~   88 (157)
                      .+.+.... +..-|.++|.+|+|||||..++...
T Consensus         4 ~~~~~~~~-k~~kI~lvG~~~vGKTsLl~~l~~~   36 (186)
T d1f6ba_           4 LQFLGLYK-KTGKLVFLGLDNAGKTTLLHMLKDD   36 (186)
T ss_dssp             HHHHTCTT-CCEEEEEEEETTSSHHHHHHHHSCC
T ss_pred             HHhccccC-CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            34443333 3455779999999999999988664

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.67  E-value=0.00098  Score=47.41  Aligned_cols=24  Identities=17%  Similarity=0.122  Sum_probs=21.4

Q ss_pred             CceEEEEEeCCCCcHHHHHHHHhc
Q 045087           64 QLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        64 ~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ....++|+|..|.|||||++.+..
T Consensus        39 ~Ge~vaivG~sGsGKSTLl~li~g   62 (251)
T d1jj7a_          39 PGEVTALVGPNGSGKSTVAALLQN   62 (251)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTT
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhc
Confidence            356999999999999999999966

>d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=96.66  E-value=0.001  Score=48.16  Aligned_cols=93  Identities=15%  Similarity=0.063  Sum_probs=47.4

Q ss_pred             ceEEEEEeCCCCcHHHHHHHHhcCccc-cc----cc-CeeEEEEcCCCCC-HHHHHHHHHHHhCCCCCC---cccccccH
Q 045087           65 LSAVTILDSIGLDKTAFAAEAYSSNYM-KH----YF-DCHAWVQEPYTCY-ADQILDIIIKFLMPSSRL---SEIKDKNY  134 (157)
Q Consensus        65 ~~vi~I~G~gGiGKTtLa~~v~~~~~~-~~----~F-~~~~wv~~~~~~~-~~~~l~~i~~~l~~~~~~---~~~~~~~~  134 (157)
                      ...++|.|.+|+|||+|+..+...... ..    .- ...++..++.... ..++...+...-......   ...+....
T Consensus        68 GQr~~If~~~g~GKt~ll~~~~~~~~~~~~~~~~~~~~~~v~~~IGer~~E~~e~~~~~~~~~~~~~tvvv~~ts~~~~~  147 (285)
T d2jdia3          68 GQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIVVSATASDAAP  147 (285)
T ss_dssp             TCBCEEEESTTSSHHHHHHHHHHHTHHHHTSSCTTTCCEEEEEEESCCHHHHHHHHHHHHHTTCGGGEEEEEECTTSCHH
T ss_pred             CCEEEeecCCCCChHHHHHHHHHhHHhhccccccccceEEEEeeeCccHHHHHHHHHHhcccccccceEEEEECCCCCHH
Confidence            346788999999999998766542111 11    11 1345666766543 345555554331110000   00011111


Q ss_pred             HH-----HHHHHHHHh--cCCcEEEEeeCC
Q 045087          135 EM-----KKIILHEYL--MTKRYLIVIDDV  157 (157)
Q Consensus       135 ~~-----~~~~l~~~L--~~kr~LlVlDdV  157 (157)
                      ..     ..-.+.+++  ++|.+|+++||+
T Consensus       148 ~r~~~~~~a~tiAEyfrd~G~~VLll~Dsl  177 (285)
T d2jdia3         148 LQYLAPYSGCSMGEYFRDNGKHALIIYDDL  177 (285)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCEEEEEEETH
T ss_pred             HHHHHHHHHHHHHHHHHHcCCcEEEEEcCh
Confidence            11     111233443  589999999984

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=96.65  E-value=0.00073  Score=45.57  Aligned_cols=25  Identities=12%  Similarity=0.266  Sum_probs=22.1

Q ss_pred             CceEEEEEeCCCCcHHHHHHHHhcC
Q 045087           64 QLSAVTILDSIGLDKTAFAAEAYSS   88 (157)
Q Consensus        64 ~~~vi~I~G~gGiGKTtLa~~v~~~   88 (157)
                      ..+.|+|+|.+|+|||||...+.+.
T Consensus        22 ~~~~I~lvG~~n~GKSTLin~L~g~   46 (195)
T d1svia_          22 GLPEIALAGRSNVGKSSFINSLINR   46 (195)
T ss_dssp             CCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred             CCCEEEEECCCCCCHHHHHHHhcCC
Confidence            4667999999999999999999863

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.65  E-value=0.001  Score=47.51  Aligned_cols=23  Identities=22%  Similarity=0.222  Sum_probs=21.1

Q ss_pred             ceEEEEEeCCCCcHHHHHHHHhc
Q 045087           65 LSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        65 ~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ..+++|+|..|.|||||++.+..
T Consensus        28 GEi~~iiG~sGsGKSTLl~~i~G   50 (258)
T d1b0ua_          28 GDVISIIGSSGSGKSTFLRCINF   50 (258)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHTT
T ss_pred             CCEEEEECCCCCcHHHHHHHHHc
Confidence            45999999999999999999976

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.65  E-value=0.00062  Score=48.52  Aligned_cols=24  Identities=17%  Similarity=0.162  Sum_probs=21.2

Q ss_pred             CceEEEEEeCCCCcHHHHHHHHhc
Q 045087           64 QLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        64 ~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ....++|+|..|.|||||++.+..
T Consensus        40 ~Ge~iaivG~sGsGKSTLl~ll~g   63 (253)
T d3b60a1          40 AGKTVALVGRSGSGKSTIASLITR   63 (253)
T ss_dssp             TTCEEEEEECTTSSHHHHHHHHTT
T ss_pred             CCCEEEEECCCCChHHHHHHHHhc
Confidence            346899999999999999999965

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.64  E-value=0.00039  Score=48.30  Aligned_cols=23  Identities=17%  Similarity=0.277  Sum_probs=21.1

Q ss_pred             ceEEEEEeCCCCcHHHHHHHHhc
Q 045087           65 LSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        65 ~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      .+.|+|-|+-|+||||+|+.+.+
T Consensus         2 ~k~I~ieG~dGsGKST~~~~L~~   24 (241)
T d1p5zb_           2 IKKISIEGNIAAGKSTFVNILKQ   24 (241)
T ss_dssp             CEEEEEECSTTSSHHHHHTTTGG
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            57899999999999999998877

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=96.63  E-value=0.00079  Score=46.25  Aligned_cols=23  Identities=17%  Similarity=0.179  Sum_probs=21.0

Q ss_pred             ceEEEEEeCCCCcHHHHHHHHhc
Q 045087           65 LSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        65 ~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ..+++|+|+.|+|||||.+.++.
T Consensus        27 Gei~~l~G~NGsGKSTLl~~i~g   49 (200)
T d1sgwa_          27 GNVVNFHGPNGIGKTTLLKTIST   49 (200)
T ss_dssp             TCCEEEECCTTSSHHHHHHHHTT
T ss_pred             CCEEEEECCCCChHHHHHHHHhc
Confidence            45899999999999999999977

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=96.62  E-value=0.00058  Score=47.08  Aligned_cols=22  Identities=9%  Similarity=0.140  Sum_probs=20.0

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhc
Q 045087           66 SAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        66 ~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      .++.|+|++|+|||||.+.+..
T Consensus         3 ~livi~GPSG~GK~tl~~~L~~   24 (205)
T d1s96a_           3 TLYIVSAPSGAGKSSLIQALLK   24 (205)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHh
Confidence            5788999999999999998876

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=96.61  E-value=0.00053  Score=44.23  Aligned_cols=21  Identities=10%  Similarity=-0.001  Sum_probs=18.4

Q ss_pred             EEEEeCCCCcHHHHHHHHhcC
Q 045087           68 VTILDSIGLDKTAFAAEAYSS   88 (157)
Q Consensus        68 i~I~G~gGiGKTtLa~~v~~~   88 (157)
                      |.|+|.+|+|||||..++..+
T Consensus         3 ivlvG~~~vGKSsLi~~l~~~   23 (160)
T d1r8sa_           3 ILMVGLDAAGKTTILYKLKLG   23 (160)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhcC
Confidence            569999999999999988654

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.60  E-value=0.0011  Score=46.91  Aligned_cols=22  Identities=18%  Similarity=0.240  Sum_probs=20.0

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhc
Q 045087           66 SAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        66 ~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      .+++|+|+.|.|||||.+.++.
T Consensus        25 e~~~liGpnGaGKSTll~~i~G   46 (240)
T d2onka1          25 DYCVLLGPTGAGKSVFLELIAG   46 (240)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHT
T ss_pred             EEEEEECCCCChHHHHHHHHHc
Confidence            3788999999999999999976

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=96.60  E-value=0.0009  Score=46.12  Aligned_cols=36  Identities=22%  Similarity=0.189  Sum_probs=26.4

Q ss_pred             HHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087           52 EELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        52 ~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ..|-++|..+-....++.|+|.+|+|||++|..++.
T Consensus        21 ~~LD~ll~GGl~~G~l~~i~G~~G~GKT~~~l~~a~   56 (258)
T d2i1qa2          21 SELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCV   56 (258)
T ss_dssp             HHHHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred             HHHHHhcCCCccCCeEEEEEeCCCCCHHHHHHHHHH
Confidence            344444443334567999999999999999988865

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=96.58  E-value=0.00061  Score=44.23  Aligned_cols=22  Identities=23%  Similarity=0.149  Sum_probs=19.4

Q ss_pred             EEEEEeCCCCcHHHHHHHHhcC
Q 045087           67 AVTILDSIGLDKTAFAAEAYSS   88 (157)
Q Consensus        67 vi~I~G~gGiGKTtLa~~v~~~   88 (157)
                      -|+|+|.+|+|||||..++..+
T Consensus         7 kI~ivG~~~vGKSSLi~~~~~~   28 (169)
T d1upta_           7 RILILGLDGAGKTTILYRLQVG   28 (169)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            3789999999999999988765

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=96.58  E-value=0.00076  Score=47.69  Aligned_cols=23  Identities=9%  Similarity=0.047  Sum_probs=20.9

Q ss_pred             ceEEEEEeCCCCcHHHHHHHHhc
Q 045087           65 LSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        65 ~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ..+++|+|..|+|||||++.++.
T Consensus        31 Ge~~~iiG~sGsGKSTLl~~i~G   53 (240)
T d3dhwc1          31 GQIYGVIGASGAGKSTLIRCVNL   53 (240)
T ss_dssp             SCEEEEEESTTSSHHHHHHHHTT
T ss_pred             CCEEEEECCCCCCHHHHHHHHcC
Confidence            45999999999999999999966

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=96.57  E-value=0.0008  Score=47.61  Aligned_cols=24  Identities=13%  Similarity=0.015  Sum_probs=21.4

Q ss_pred             CceEEEEEeCCCCcHHHHHHHHhc
Q 045087           64 QLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        64 ~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ....++|+|..|.|||||++.+..
T Consensus        27 ~Ge~vaivG~sGsGKSTLl~ll~g   50 (242)
T d1mv5a_          27 PNSIIAFAGPSGGGKSTIFSLLER   50 (242)
T ss_dssp             TTEEEEEECCTTSSHHHHHHHHTT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHH
Confidence            356999999999999999999965

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=96.56  E-value=0.00069  Score=47.94  Aligned_cols=23  Identities=13%  Similarity=0.124  Sum_probs=21.0

Q ss_pred             ceEEEEEeCCCCcHHHHHHHHhc
Q 045087           65 LSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        65 ~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ...++|+|..|.|||||++.+..
T Consensus        29 Ge~vaIvG~sGsGKSTLl~ll~g   51 (241)
T d2pmka1          29 GEVIGIVGRSGSGKSTLTKLIQR   51 (241)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTT
T ss_pred             CCEEEEECCCCCCHHHHHHHHHh
Confidence            45899999999999999999976

>d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Azotobacter vinelandii [TaxId: 354]

Probab=96.55  E-value=0.00074  Score=48.52  Aligned_cols=23  Identities=13%  Similarity=0.225  Sum_probs=19.0

Q ss_pred             ceEEEEEeCCCCcHHHHHHHHhc
Q 045087           65 LSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        65 ~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      .+.|+|.|-||+||||+|..+..
T Consensus         2 Mr~IaisgKGGVGKTT~a~NLA~   24 (289)
T d2afhe1           2 MRQCAIYGKGGIGKSTTTQNLVA   24 (289)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHH
T ss_pred             ccEEEEECCCCCCHHHHHHHHHH
Confidence            35788999999999998877655

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=96.55  E-value=0.00068  Score=46.56  Aligned_cols=21  Identities=24%  Similarity=0.238  Sum_probs=18.4

Q ss_pred             eEEEEEeCCCCcHHHHHHHHh
Q 045087           66 SAVTILDSIGLDKTAFAAEAY   86 (157)
Q Consensus        66 ~vi~I~G~gGiGKTtLa~~v~   86 (157)
                      .+|+|+|+.|+||||+|+.+-
T Consensus         4 ~iIgitG~igSGKStv~~~l~   24 (208)
T d1vhta_           4 YIVALTGGIGSGKSTVANAFA   24 (208)
T ss_dssp             EEEEEECCTTSCHHHHHHHHH
T ss_pred             EEEEEECCCcCCHHHHHHHHH
Confidence            389999999999999998653

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=96.55  E-value=0.00069  Score=47.91  Aligned_cols=23  Identities=17%  Similarity=0.044  Sum_probs=20.8

Q ss_pred             ceEEEEEeCCCCcHHHHHHHHhc
Q 045087           65 LSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        65 ~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ..+++|+|..|.|||||++.++.
T Consensus        29 Ge~~~liG~sGaGKSTll~~i~g   51 (240)
T d1g2912          29 GEFMILLGPSGCGKTTTLRMIAG   51 (240)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHHT
T ss_pred             CCEEEEECCCCChHHHHHHHHhc
Confidence            45899999999999999999965

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=96.55  E-value=0.0013  Score=43.39  Aligned_cols=26  Identities=19%  Similarity=0.093  Sum_probs=21.4

Q ss_pred             CCceEEEEEeCCCCcHHHHHHHHhcC
Q 045087           63 PQLSAVTILDSIGLDKTAFAAEAYSS   88 (157)
Q Consensus        63 ~~~~vi~I~G~gGiGKTtLa~~v~~~   88 (157)
                      .+---|.++|.+|+|||||..++...
T Consensus        14 ~~~~kI~vvG~~~vGKSsLi~~l~~~   39 (176)
T d1fzqa_          14 DQEVRILLLGLDNAGKTTLLKQLASE   39 (176)
T ss_dssp             SSCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred             CCEEEEEEECCCCCCHHHHHHHHhcC
Confidence            34456789999999999999998664

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=96.50  E-value=0.00078  Score=46.11  Aligned_cols=21  Identities=29%  Similarity=0.202  Sum_probs=18.6

Q ss_pred             eEEEEEeCCCCcHHHHHHHHh
Q 045087           66 SAVTILDSIGLDKTAFAAEAY   86 (157)
Q Consensus        66 ~vi~I~G~gGiGKTtLa~~v~   86 (157)
                      .+|+|+|..|+||||+|+.+-
T Consensus         3 ~iIgITG~igSGKStv~~~l~   23 (205)
T d1jjva_           3 YIVGLTGGIGSGKTTIANLFT   23 (205)
T ss_dssp             EEEEEECSTTSCHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHH
Confidence            589999999999999998663

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.48  E-value=0.0026  Score=43.76  Aligned_cols=24  Identities=17%  Similarity=-0.013  Sum_probs=21.5

Q ss_pred             CceEEEEEeCCCCcHHHHHHHHhc
Q 045087           64 QLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        64 ~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      +...|+|-|+-|+||||+++.+.+
T Consensus         2 kGk~I~iEG~DGsGKST~~~~L~~   25 (214)
T d1tmka_           2 RGKLILIEGLDRTGKTTQCNILYK   25 (214)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHH
T ss_pred             CeEEEEEECCCCCcHHHHHHHHHH
Confidence            456899999999999999998887

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.47  E-value=0.00095  Score=43.75  Aligned_cols=21  Identities=5%  Similarity=0.161  Sum_probs=18.4

Q ss_pred             EEEEeCCCCcHHHHHHHHhcC
Q 045087           68 VTILDSIGLDKTAFAAEAYSS   88 (157)
Q Consensus        68 i~I~G~gGiGKTtLa~~v~~~   88 (157)
                      |.++|.+|+|||||+.++.+.
T Consensus         5 v~liG~~~vGKSsLi~rl~~~   25 (164)
T d1z2aa1           5 MVVVGNGAVGKSSMIQRYCKG   25 (164)
T ss_dssp             EEEECSTTSSHHHHHHHHHHC
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            678999999999999888754

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.47  E-value=0.00094  Score=48.27  Aligned_cols=24  Identities=21%  Similarity=0.165  Sum_probs=21.7

Q ss_pred             CceEEEEEeCCCCcHHHHHHHHhc
Q 045087           64 QLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        64 ~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ...+++|+|..|.|||||++.++.
T Consensus        61 ~Ge~vaivG~nGsGKSTLl~~i~G   84 (281)
T d1r0wa_          61 KGEMLAITGSTGSGKTSLLMLILG   84 (281)
T ss_dssp             TTCEEEEEESTTSSHHHHHHHHHT
T ss_pred             CCCEEEEECCCCChHHHHHHHHhC
Confidence            456899999999999999999976

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.47  E-value=0.0012  Score=44.84  Aligned_cols=21  Identities=14%  Similarity=0.140  Sum_probs=19.2

Q ss_pred             EEEEEeCCCCcHHHHHHHHhc
Q 045087           67 AVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        67 vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      .|+|-|.-|+||||+++.+.+
T Consensus         2 lI~ieG~dGsGKST~~~~L~~   22 (208)
T d1gsia_           2 LIAIEGVDGAGKRTLVEKLSG   22 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            588999999999999998877

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.46  E-value=0.00096  Score=46.93  Aligned_cols=23  Identities=13%  Similarity=0.068  Sum_probs=20.6

Q ss_pred             ceEEEEEeCCCCcHHHHHHHHhc
Q 045087           65 LSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        65 ~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ..+++|+|+.|+|||||.+.++.
T Consensus        26 Gei~~liGpsGsGKSTLl~~i~G   48 (232)
T d2awna2          26 GEFVVFVGPSGCGKSTLLRMIAG   48 (232)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHHT
T ss_pred             CCEEEEECCCCChHHHHHHHHhc
Confidence            45999999999999999999855

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.42  E-value=0.001  Score=46.23  Aligned_cols=23  Identities=17%  Similarity=0.219  Sum_probs=21.0

Q ss_pred             ceEEEEEeCCCCcHHHHHHHHhc
Q 045087           65 LSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        65 ~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      .+.|+|-|+-|+||||+++.+.+
T Consensus         2 pk~IviEG~~GsGKST~~~~L~~   24 (241)
T d2ocpa1           2 PRRLSIEGNIAVGKSTFVKLLTK   24 (241)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCcHHHHHHHHHH
Confidence            57899999999999999998876

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.41  E-value=0.00087  Score=44.39  Aligned_cols=22  Identities=14%  Similarity=0.246  Sum_probs=19.0

Q ss_pred             EEEEEeCCCCcHHHHHHHHhcC
Q 045087           67 AVTILDSIGLDKTAFAAEAYSS   88 (157)
Q Consensus        67 vi~I~G~gGiGKTtLa~~v~~~   88 (157)
                      -|.|+|.+|+|||+|+.++.++
T Consensus         5 KivvvG~~~vGKTsli~r~~~~   26 (173)
T d2a5ja1           5 KYIIIGDTGVGKSCLLLQFTDK   26 (173)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHhcC
Confidence            3678999999999999988764

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.41  E-value=0.00089  Score=43.79  Aligned_cols=22  Identities=9%  Similarity=0.226  Sum_probs=19.2

Q ss_pred             EEEEEeCCCCcHHHHHHHHhcC
Q 045087           67 AVTILDSIGLDKTAFAAEAYSS   88 (157)
Q Consensus        67 vi~I~G~gGiGKTtLa~~v~~~   88 (157)
                      -|.++|.+|+|||+|..++.++
T Consensus         4 Kv~liG~~~vGKTsLl~~~~~~   25 (165)
T d1z06a1           4 KIIVIGDSNVGKTCLTYRFCAG   25 (165)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4779999999999999988764

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=96.40  E-value=0.0021  Score=44.90  Aligned_cols=35  Identities=20%  Similarity=0.222  Sum_probs=27.4

Q ss_pred             HHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhcCc
Q 045087           50 RMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSSN   89 (157)
Q Consensus        50 ~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~   89 (157)
                      .+++|.++|..     +...++|.+|+|||||..++..+.
T Consensus        85 g~~~L~~~l~~-----kt~~~~G~SGVGKSTLiN~L~~~~  119 (225)
T d1u0la2          85 GIEELKEYLKG-----KISTMAGLSGVGKSSLLNAINPGL  119 (225)
T ss_dssp             THHHHHHHHSS-----SEEEEECSTTSSHHHHHHHHSTTC
T ss_pred             hHhhHHHHhcC-----CeEEEECCCCCCHHHHHHhhcchh
Confidence            36777777732     367789999999999999997653

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=96.40  E-value=0.0011  Score=46.87  Aligned_cols=23  Identities=17%  Similarity=0.056  Sum_probs=20.8

Q ss_pred             ceEEEEEeCCCCcHHHHHHHHhc
Q 045087           65 LSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        65 ~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ..+++|+|+.|.|||||.+.+..
T Consensus        32 Ge~~~liGpsGaGKSTLl~~i~G   54 (239)
T d1v43a3          32 GEFLVLLGPSGCGKTTTLRMIAG   54 (239)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHHT
T ss_pred             CCEEEEECCCCChHHHHHHHHHc
Confidence            45899999999999999999865

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=96.40  E-value=0.0011  Score=43.77  Aligned_cols=22  Identities=14%  Similarity=0.182  Sum_probs=19.3

Q ss_pred             EEEEEeCCCCcHHHHHHHHhcC
Q 045087           67 AVTILDSIGLDKTAFAAEAYSS   88 (157)
Q Consensus        67 vi~I~G~gGiGKTtLa~~v~~~   88 (157)
                      .|+|+|.+|+|||||..++...
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~~   23 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVKK   23 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC-
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5899999999999999999753

>d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.37  E-value=0.0022  Score=44.06  Aligned_cols=37  Identities=16%  Similarity=0.073  Sum_probs=26.9

Q ss_pred             eEEEEE-eCCCCcHHHHHHHHhcCcccccccCeeEEEEcC
Q 045087           66 SAVTIL-DSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEP  104 (157)
Q Consensus        66 ~vi~I~-G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~  104 (157)
                      ++|+|+ |-||+||||+|..+..  .+.+.-..++.+.+.
T Consensus         2 kvIav~s~KGGvGKTtia~nlA~--~la~~g~~VlliD~D   39 (232)
T d1hyqa_           2 RTITVASGKGGTGKTTITANLGV--ALAQLGHDVTIVDAD   39 (232)
T ss_dssp             EEEEEEESSSCSCHHHHHHHHHH--HHHHTTCCEEEEECC
T ss_pred             EEEEEECCCCCChHHHHHHHHHH--HHHhCCCCEEEEeCC
Confidence            688888 8899999999988876  444443345666543

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.36  E-value=0.0013  Score=43.35  Aligned_cols=24  Identities=8%  Similarity=0.170  Sum_probs=21.3

Q ss_pred             ceEEEEEeCCCCcHHHHHHHHhcC
Q 045087           65 LSAVTILDSIGLDKTAFAAEAYSS   88 (157)
Q Consensus        65 ~~vi~I~G~gGiGKTtLa~~v~~~   88 (157)
                      ...|+|+|.+|+|||||..++.+.
T Consensus         5 ~~~I~iiG~~nvGKSSLin~L~~~   28 (179)
T d1egaa1           5 CGFIAIVGRPNVGKSTLLNKLLGQ   28 (179)
T ss_dssp             EEEEEEECSSSSSHHHHHHHHHTC
T ss_pred             ccEEEEECCCCCCHHHHHHHHhCC
Confidence            567899999999999999999864

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.36  E-value=0.0011  Score=43.58  Aligned_cols=21  Identities=14%  Similarity=0.295  Sum_probs=18.4

Q ss_pred             EEEEeCCCCcHHHHHHHHhcC
Q 045087           68 VTILDSIGLDKTAFAAEAYSS   88 (157)
Q Consensus        68 i~I~G~gGiGKTtLa~~v~~~   88 (157)
                      |.++|.+|+|||||..++..+
T Consensus         5 i~viG~~~vGKTsLi~r~~~~   25 (171)
T d2erxa1           5 VAVFGAGGVGKSSLVLRFVKG   25 (171)
T ss_dssp             EEEECCTTSSHHHHHHHHHTC
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            678999999999999888764

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=96.32  E-value=0.0011  Score=43.26  Aligned_cols=22  Identities=14%  Similarity=0.058  Sum_probs=19.1

Q ss_pred             EEEEEeCCCCcHHHHHHHHhcC
Q 045087           67 AVTILDSIGLDKTAFAAEAYSS   88 (157)
Q Consensus        67 vi~I~G~gGiGKTtLa~~v~~~   88 (157)
                      -|.|+|.+|+|||||...+...
T Consensus         4 ki~ivG~~~~GKTsLi~~l~~~   25 (165)
T d1ksha_           4 RLLMLGLDNAGKTTILKKFNGE   25 (165)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTC
T ss_pred             EEEEECCCCCCHHHHHHHHcCC
Confidence            3679999999999999998664

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.31  E-value=0.0011  Score=43.56  Aligned_cols=22  Identities=14%  Similarity=0.294  Sum_probs=18.8

Q ss_pred             EEEEEeCCCCcHHHHHHHHhcC
Q 045087           67 AVTILDSIGLDKTAFAAEAYSS   88 (157)
Q Consensus        67 vi~I~G~gGiGKTtLa~~v~~~   88 (157)
                      -|.|+|.+|+|||+|..++.++
T Consensus         6 KivlvG~~~vGKTsli~~~~~~   27 (166)
T d1z0fa1           6 KYIIIGDMGVGKSCLLHQFTEK   27 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            3778999999999999888653

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.30  E-value=0.0012  Score=43.19  Aligned_cols=21  Identities=14%  Similarity=0.202  Sum_probs=18.5

Q ss_pred             EEEEeCCCCcHHHHHHHHhcC
Q 045087           68 VTILDSIGLDKTAFAAEAYSS   88 (157)
Q Consensus        68 i~I~G~gGiGKTtLa~~v~~~   88 (157)
                      |.++|.+|+|||+|..++.++
T Consensus         3 v~vvG~~~vGKTsLi~r~~~~   23 (164)
T d1yzqa1           3 LVFLGEQSVGKTSLITRFMYD   23 (164)
T ss_dssp             EEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            678999999999999988754

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=96.30  E-value=0.0013  Score=44.99  Aligned_cols=52  Identities=15%  Similarity=0.110  Sum_probs=31.7

Q ss_pred             HHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCC
Q 045087           53 ELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPY  105 (157)
Q Consensus        53 ~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~  105 (157)
                      .|-+.|..+-+...++.|+|.+|+|||++|..++.. .....-....|++...
T Consensus        14 ~LD~~l~GGi~~G~~~~I~G~~G~GKT~la~~~~~~-~~~~~~~~~~~~s~e~   65 (242)
T d1tf7a1          14 GFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYN-GIIEFDEPGVFVTFEE   65 (242)
T ss_dssp             THHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHH-HHHHHCCCEEEEESSS
T ss_pred             HHHHhhcCCCcCCeEEEEEeCCCCCHHHHHHHHHHH-HHHhcCCCcccccccC
Confidence            344445444345679999999999999999765431 1222222455666543

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=96.30  E-value=0.0015  Score=43.27  Aligned_cols=24  Identities=13%  Similarity=0.149  Sum_probs=21.4

Q ss_pred             ceEEEEEeCCCCcHHHHHHHHhcC
Q 045087           65 LSAVTILDSIGLDKTAFAAEAYSS   88 (157)
Q Consensus        65 ~~vi~I~G~gGiGKTtLa~~v~~~   88 (157)
                      ...|+|+|.+|+|||||..++...
T Consensus         5 ~~~I~lvG~~~~GKSSLin~l~~~   28 (178)
T d1wf3a1           5 SGFVAIVGKPNVGKSTLLNNLLGV   28 (178)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHTS
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCC
Confidence            468999999999999999999864

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=96.27  E-value=0.0036  Score=44.29  Aligned_cols=41  Identities=15%  Similarity=0.199  Sum_probs=31.0

Q ss_pred             HHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhcC
Q 045087           48 DDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSS   88 (157)
Q Consensus        48 ~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~   88 (157)
                      +..+.++...+.......-.|.++|.+|+|||||...++..
T Consensus        15 ~~~l~e~~~~l~~~~~~~l~I~LvG~tg~GKSSliN~ilg~   55 (257)
T d1h65a_          15 QTKLLELLGNLKQEDVNSLTILVMGKGGVGKSSTVNSIIGE   55 (257)
T ss_dssp             HHHHHHHHHHHHHTTCCEEEEEEEESTTSSHHHHHHHHHTS
T ss_pred             HHHHHHHHHHHhhcCCCCcEEEEECCCCCcHHHHHHHHhCC
Confidence            34555666666655445567889999999999999999875

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.27  E-value=0.0012  Score=44.13  Aligned_cols=22  Identities=23%  Similarity=0.277  Sum_probs=19.1

Q ss_pred             EEEEEeCCCCcHHHHHHHHhcC
Q 045087           67 AVTILDSIGLDKTAFAAEAYSS   88 (157)
Q Consensus        67 vi~I~G~gGiGKTtLa~~v~~~   88 (157)
                      -|.|+|.+|+|||||+..+.+.
T Consensus         7 Ki~ivG~~~vGKTsLi~~l~~~   28 (186)
T d2f7sa1           7 KLLALGDSGVGKTTFLYRYTDN   28 (186)
T ss_dssp             EEEEESCTTSSHHHHHHHHHCS
T ss_pred             EEEEECCCCcCHHHHHHHHhcC
Confidence            3778999999999999988764

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.27  E-value=0.0012  Score=44.70  Aligned_cols=23  Identities=13%  Similarity=0.120  Sum_probs=20.4

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhcC
Q 045087           66 SAVTILDSIGLDKTAFAAEAYSS   88 (157)
Q Consensus        66 ~vi~I~G~gGiGKTtLa~~v~~~   88 (157)
                      +.|+|+|.+|+|||||..++.+.
T Consensus         4 p~V~lvG~~n~GKTSLln~l~~~   26 (209)
T d1nrjb_           4 PSIIIAGPQNSGKTSLLTLLTTD   26 (209)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            47899999999999999988764

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=96.26  E-value=0.00099  Score=46.75  Aligned_cols=23  Identities=26%  Similarity=0.176  Sum_probs=20.9

Q ss_pred             ceEEEEEeCCCCcHHHHHHHHhc
Q 045087           65 LSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        65 ~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ..+++|+|+.|+|||||.+.+..
T Consensus        26 Ge~~~liGpsGaGKSTll~~l~G   48 (229)
T d3d31a2          26 GEYFVILGPTGAGKTLFLELIAG   48 (229)
T ss_dssp             TCEEEEECCCTHHHHHHHHHHHT
T ss_pred             CCEEEEECCCCCcHHHHHHHHhc
Confidence            45999999999999999999966

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.26  E-value=0.0012  Score=43.52  Aligned_cols=22  Identities=18%  Similarity=0.259  Sum_probs=19.0

Q ss_pred             EEEEEeCCCCcHHHHHHHHhcC
Q 045087           67 AVTILDSIGLDKTAFAAEAYSS   88 (157)
Q Consensus        67 vi~I~G~gGiGKTtLa~~v~~~   88 (157)
                      -|.++|.+|+|||||..++.++
T Consensus         7 Ki~vvG~~~vGKTsLi~~l~~~   28 (169)
T d3raba_           7 KILIIGNSSVGKTSFLFRYADD   28 (169)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHcC
Confidence            3789999999999999988654

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.21  E-value=0.0014  Score=43.16  Aligned_cols=22  Identities=27%  Similarity=0.258  Sum_probs=18.8

Q ss_pred             EEEEEeCCCCcHHHHHHHHhcC
Q 045087           67 AVTILDSIGLDKTAFAAEAYSS   88 (157)
Q Consensus        67 vi~I~G~gGiGKTtLa~~v~~~   88 (157)
                      -|.++|.+|+|||+|+..+...
T Consensus         3 Ki~lvG~~~vGKTsLi~~~~~~   24 (168)
T d2gjsa1           3 KVLLLGAPGVGKSALARIFGGV   24 (168)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCcCHHHHHHHHhCC
Confidence            3678999999999999988654

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.21  E-value=0.0013  Score=43.36  Aligned_cols=22  Identities=14%  Similarity=0.327  Sum_probs=19.1

Q ss_pred             EEEEEeCCCCcHHHHHHHHhcC
Q 045087           67 AVTILDSIGLDKTAFAAEAYSS   88 (157)
Q Consensus        67 vi~I~G~gGiGKTtLa~~v~~~   88 (157)
                      -|.++|.+|+|||+|..++.++
T Consensus         7 Ki~lvG~~~vGKTsLi~~l~~~   28 (171)
T d2ew1a1           7 KIVLIGNAGVGKTCLVRRFTQG   28 (171)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4778999999999999988764

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.19  E-value=0.0014  Score=42.04  Aligned_cols=22  Identities=14%  Similarity=0.018  Sum_probs=19.0

Q ss_pred             EEEEEeCCCCcHHHHHHHHhcC
Q 045087           67 AVTILDSIGLDKTAFAAEAYSS   88 (157)
Q Consensus        67 vi~I~G~gGiGKTtLa~~v~~~   88 (157)
                      -|.++|.+|+|||||..++...
T Consensus         2 KI~liG~~nvGKSSLln~l~~~   23 (166)
T d2qtvb1           2 KLLFLGLDNAGKTTLLHMLKND   23 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999888663

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=96.18  E-value=0.0019  Score=42.95  Aligned_cols=25  Identities=20%  Similarity=0.076  Sum_probs=20.2

Q ss_pred             CceEEEEEeCCCCcHHHHHHHHhcC
Q 045087           64 QLSAVTILDSIGLDKTAFAAEAYSS   88 (157)
Q Consensus        64 ~~~vi~I~G~gGiGKTtLa~~v~~~   88 (157)
                      +---|.++|.+|+|||||..++...
T Consensus        16 k~~KI~lvG~~~vGKTsLi~~l~~~   40 (182)
T d1moza_          16 KELRILILGLDGAGKTTILYRLQIG   40 (182)
T ss_dssp             SCEEEEEEEETTSSHHHHHHHTCCS
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcC
Confidence            3445669999999999999998654

>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.18  E-value=0.0032  Score=43.20  Aligned_cols=36  Identities=17%  Similarity=0.032  Sum_probs=26.0

Q ss_pred             eEEEEE-eCCCCcHHHHHHHHhcCcccccccCeeEEEEc
Q 045087           66 SAVTIL-DSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQE  103 (157)
Q Consensus        66 ~vi~I~-G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~  103 (157)
                      ++|+|+ +-||+||||+|..+..  .....-..++.+..
T Consensus         3 ~vIav~~~kGGvGKTtia~nLA~--~la~~g~~VlliD~   39 (237)
T d1g3qa_           3 RIISIVSGKGGTGKTTVTANLSV--ALGDRGRKVLAVDG   39 (237)
T ss_dssp             EEEEEECSSTTSSHHHHHHHHHH--HHHHTTCCEEEEEC
T ss_pred             eEEEEECCCCCCcHHHHHHHHHH--HHHhCCCCEEEEeC
Confidence            689999 7799999999988876  44444334555554

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.17  E-value=0.0015  Score=42.93  Aligned_cols=22  Identities=18%  Similarity=0.184  Sum_probs=18.8

Q ss_pred             EEEEEeCCCCcHHHHHHHHhcC
Q 045087           67 AVTILDSIGLDKTAFAAEAYSS   88 (157)
Q Consensus        67 vi~I~G~gGiGKTtLa~~v~~~   88 (157)
                      -|.|+|.+|+|||+|..++..+
T Consensus         5 KivlvG~~~vGKTsLi~r~~~~   26 (167)
T d1z08a1           5 KVVLLGEGCVGKTSLVLRYCEN   26 (167)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHC
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            3678999999999999988653

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=96.16  E-value=0.0015  Score=42.92  Aligned_cols=23  Identities=17%  Similarity=0.037  Sum_probs=19.6

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhcC
Q 045087           66 SAVTILDSIGLDKTAFAAEAYSS   88 (157)
Q Consensus        66 ~vi~I~G~gGiGKTtLa~~v~~~   88 (157)
                      .-|.|+|.+|+|||||..++..+
T Consensus        16 ~kI~vvG~~~~GKSsLi~rl~~~   38 (177)
T d1zj6a1          16 HKVIIVGLDNAGKTTILYQFSMN   38 (177)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHTT
T ss_pred             EEEEEECCCCCCHHHHHHHHhcC
Confidence            45779999999999999888664

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=96.16  E-value=0.001  Score=44.23  Aligned_cols=20  Identities=15%  Similarity=0.135  Sum_probs=18.6

Q ss_pred             EEEEeCCCCcHHHHHHHHhc
Q 045087           68 VTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        68 i~I~G~gGiGKTtLa~~v~~   87 (157)
                      |+|+|.+|+|||||..++..
T Consensus         4 VaivG~~nvGKSTLin~L~~   23 (180)
T d1udxa2           4 VGLVGYPNAGKSSLLAAMTR   23 (180)
T ss_dssp             EEEECCGGGCHHHHHHHHCS
T ss_pred             EEEECCCCCCHHHHHHHHhC
Confidence            89999999999999999875

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.16  E-value=0.0015  Score=42.74  Aligned_cols=21  Identities=10%  Similarity=0.295  Sum_probs=18.6

Q ss_pred             EEEEeCCCCcHHHHHHHHhcC
Q 045087           68 VTILDSIGLDKTAFAAEAYSS   88 (157)
Q Consensus        68 i~I~G~gGiGKTtLa~~v~~~   88 (157)
                      |.++|.+|+|||||..++..+
T Consensus         5 i~vvG~~~vGKTSli~~l~~~   25 (166)
T d1g16a_           5 ILLIGDSGVGKSCLLVRFVED   25 (166)
T ss_dssp             EEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            679999999999999988664

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.15  E-value=0.0017  Score=42.53  Aligned_cols=22  Identities=18%  Similarity=0.274  Sum_probs=18.8

Q ss_pred             EEEEEeCCCCcHHHHHHHHhcC
Q 045087           67 AVTILDSIGLDKTAFAAEAYSS   88 (157)
Q Consensus        67 vi~I~G~gGiGKTtLa~~v~~~   88 (157)
                      -|.|+|.+|+|||||..++.++
T Consensus         6 Ki~lvG~~~vGKTsli~rl~~~   27 (167)
T d1z0ja1           6 KVCLLGDTGVGKSSIMWRFVED   27 (167)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            3678899999999999988764

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.14  E-value=0.0018  Score=42.70  Aligned_cols=22  Identities=27%  Similarity=0.357  Sum_probs=18.8

Q ss_pred             EEEEEeCCCCcHHHHHHHHhcC
Q 045087           67 AVTILDSIGLDKTAFAAEAYSS   88 (157)
Q Consensus        67 vi~I~G~gGiGKTtLa~~v~~~   88 (157)
                      -|.++|.+|+|||||...+.++
T Consensus         4 Ki~~vG~~~vGKSsLi~~~~~~   25 (175)
T d1ky3a_           4 KVIILGDSGVGKTSLMHRYVND   25 (175)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHcC
Confidence            3779999999999999987653

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.14  E-value=0.0016  Score=43.09  Aligned_cols=24  Identities=17%  Similarity=0.270  Sum_probs=20.0

Q ss_pred             ceEEEEEeCCCCcHHHHHHHHhcC
Q 045087           65 LSAVTILDSIGLDKTAFAAEAYSS   88 (157)
Q Consensus        65 ~~vi~I~G~gGiGKTtLa~~v~~~   88 (157)
                      .--|.|+|.+|+|||+|...+.++
T Consensus         6 ~~Kv~lvG~~~vGKTsLi~r~~~~   29 (173)
T d2fn4a1           6 THKLVVVGGGGVGKSALTIQFIQS   29 (173)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred             eEEEEEECCCCcCHHHHHHHHHhC
Confidence            345779999999999999888664

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.13  E-value=0.0016  Score=42.98  Aligned_cols=22  Identities=9%  Similarity=0.215  Sum_probs=18.7

Q ss_pred             EEEEEeCCCCcHHHHHHHHhcC
Q 045087           67 AVTILDSIGLDKTAFAAEAYSS   88 (157)
Q Consensus        67 vi~I~G~gGiGKTtLa~~v~~~   88 (157)
                      -|.++|.+|+|||||+.++..+
T Consensus         7 KI~lvG~~~vGKTsll~~~~~~   28 (174)
T d2bmea1           7 KFLVIGNAGTGKSCLLHQFIEK   28 (174)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            3789999999999999887653

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.13  E-value=0.0015  Score=42.83  Aligned_cols=22  Identities=27%  Similarity=0.401  Sum_probs=19.1

Q ss_pred             EEEEEeCCCCcHHHHHHHHhcC
Q 045087           67 AVTILDSIGLDKTAFAAEAYSS   88 (157)
Q Consensus        67 vi~I~G~gGiGKTtLa~~v~~~   88 (157)
                      -|.++|-+|+|||+|..++.++
T Consensus         5 Ki~lvG~~~vGKTsLi~r~~~~   26 (167)
T d1kaoa_           5 KVVVLGSGGVGKSALTVQFVTG   26 (167)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4778999999999999888764

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=96.12  E-value=0.0017  Score=45.83  Aligned_cols=23  Identities=22%  Similarity=0.173  Sum_probs=21.0

Q ss_pred             ceEEEEEeCCCCcHHHHHHHHhc
Q 045087           65 LSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        65 ~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ..+++|+|+.|.|||||.+.+..
T Consensus        32 Gei~~liGpnGaGKSTl~~~i~G   54 (240)
T d1ji0a_          32 GQIVTLIGANGAGKTTTLSAIAG   54 (240)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTT
T ss_pred             CCEEEEECCCCCcHHHHHHHHhC
Confidence            45999999999999999999976

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.11  E-value=0.0015  Score=42.99  Aligned_cols=22  Identities=9%  Similarity=0.203  Sum_probs=18.9

Q ss_pred             EEEEEeCCCCcHHHHHHHHhcC
Q 045087           67 AVTILDSIGLDKTAFAAEAYSS   88 (157)
Q Consensus        67 vi~I~G~gGiGKTtLa~~v~~~   88 (157)
                      -|.++|.+|+|||+|..++.++
T Consensus         8 Ki~vvG~~~vGKTsLi~~l~~~   29 (170)
T d1r2qa_           8 KLVLLGESAVGKSSLVLRFVKG   29 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            3678999999999999888754

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.10  E-value=0.0016  Score=42.84  Aligned_cols=22  Identities=18%  Similarity=0.314  Sum_probs=18.9

Q ss_pred             EEEEEeCCCCcHHHHHHHHhcC
Q 045087           67 AVTILDSIGLDKTAFAAEAYSS   88 (157)
Q Consensus        67 vi~I~G~gGiGKTtLa~~v~~~   88 (157)
                      -|.++|.+|+|||+|..++..+
T Consensus         7 Ki~lvG~~~vGKTsLi~r~~~~   28 (171)
T d2erya1           7 RLVVVGGGGVGKSALTIQFIQS   28 (171)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4788999999999999887654

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=96.10  E-value=0.0017  Score=42.95  Aligned_cols=22  Identities=5%  Similarity=0.084  Sum_probs=19.7

Q ss_pred             EEEEEeCCCCcHHHHHHHHhcC
Q 045087           67 AVTILDSIGLDKTAFAAEAYSS   88 (157)
Q Consensus        67 vi~I~G~gGiGKTtLa~~v~~~   88 (157)
                      -|+|+|.+|+|||||..++...
T Consensus         2 ~I~lvG~~nvGKSsLin~l~~~   23 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLTGK   23 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4889999999999999999864

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.10  E-value=0.0014  Score=45.50  Aligned_cols=25  Identities=12%  Similarity=0.226  Sum_probs=22.1

Q ss_pred             CceEEEEEeCCCCcHHHHHHHHhcC
Q 045087           64 QLSAVTILDSIGLDKTAFAAEAYSS   88 (157)
Q Consensus        64 ~~~vi~I~G~gGiGKTtLa~~v~~~   88 (157)
                      ..++..|.|+-|.|||||.+.+...
T Consensus         2 ~iPv~iitGFLGaGKTTll~~lL~~   26 (222)
T d1nija1           2 PIAVTLLTGFLGAGKTTLLRHILNE   26 (222)
T ss_dssp             CEEEEEEEESSSSSCHHHHHHHHHS
T ss_pred             CCCEEEEeeCCCCCHHHHHHHHHhc
Confidence            4688999999999999999998774

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.09  E-value=0.0017  Score=46.13  Aligned_cols=24  Identities=13%  Similarity=0.047  Sum_probs=21.5

Q ss_pred             ceEEEEEeCCCCcHHHHHHHHhcC
Q 045087           65 LSAVTILDSIGLDKTAFAAEAYSS   88 (157)
Q Consensus        65 ~~vi~I~G~gGiGKTtLa~~v~~~   88 (157)
                      ..+++|+|+.|.|||||++.++.-
T Consensus        30 Gei~~liG~nGaGKSTLl~~i~Gl   53 (254)
T d1g6ha_          30 GDVTLIIGPNGSGKSTLINVITGF   53 (254)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred             CCEEEEECCCCCcHHHHHHHHHCC
Confidence            458999999999999999999773

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.07  E-value=0.002  Score=42.34  Aligned_cols=21  Identities=19%  Similarity=0.398  Sum_probs=18.5

Q ss_pred             EEEEeCCCCcHHHHHHHHhcC
Q 045087           68 VTILDSIGLDKTAFAAEAYSS   88 (157)
Q Consensus        68 i~I~G~gGiGKTtLa~~v~~~   88 (157)
                      |.++|.+|+|||+|..++.++
T Consensus         5 i~lvG~~~vGKTsli~r~~~~   25 (168)
T d2atva1           5 LAIFGRAGVGKSALVVRFLTK   25 (168)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            578899999999999888764

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.06  E-value=0.0022  Score=42.00  Aligned_cols=24  Identities=13%  Similarity=0.191  Sum_probs=19.8

Q ss_pred             ceEEEEEeCCCCcHHHHHHHHhcC
Q 045087           65 LSAVTILDSIGLDKTAFAAEAYSS   88 (157)
Q Consensus        65 ~~vi~I~G~gGiGKTtLa~~v~~~   88 (157)
                      ..-|.|+|.+|+|||+|...+.++
T Consensus         4 ~~Kv~liG~~~vGKTsLl~~~~~~   27 (167)
T d1xtqa1           4 SRKIAILGYRSVGKSSLTIQFVEG   27 (167)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhC
Confidence            345788999999999999887653

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.06  E-value=0.0022  Score=41.93  Aligned_cols=21  Identities=14%  Similarity=0.346  Sum_probs=18.8

Q ss_pred             EEEEeCCCCcHHHHHHHHhcC
Q 045087           68 VTILDSIGLDKTAFAAEAYSS   88 (157)
Q Consensus        68 i~I~G~gGiGKTtLa~~v~~~   88 (157)
                      |.++|.+|+|||+|..++.++
T Consensus         6 i~viG~~~vGKTsli~~l~~~   26 (166)
T d1ctqa_           6 LVVVGAGGVGKSALTIQLIQN   26 (166)
T ss_dssp             EEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            788999999999999988764

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=96.06  E-value=0.0021  Score=45.30  Aligned_cols=23  Identities=13%  Similarity=0.020  Sum_probs=21.0

Q ss_pred             ceEEEEEeCCCCcHHHHHHHHhc
Q 045087           65 LSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        65 ~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ..+++|+|+.|.|||||.+.+..
T Consensus        28 Gei~glvG~nGaGKSTLl~~l~G   50 (238)
T d1vpla_          28 GEIFGLIGPNGAGKTTTLRIIST   50 (238)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHTT
T ss_pred             CCEEEEECCCCCCHHHHHHHHhc
Confidence            45999999999999999999976

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=96.04  E-value=0.0013  Score=43.85  Aligned_cols=21  Identities=14%  Similarity=0.150  Sum_probs=19.0

Q ss_pred             EEEEEeCCCCcHHHHHHHHhc
Q 045087           67 AVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        67 vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      -|+|+|.+++|||||..++..
T Consensus         3 ~VaiiG~~nvGKSSLin~L~~   23 (185)
T d1lnza2           3 DVGLVGFPSVGKSTLLSVVSS   23 (185)
T ss_dssp             CEEEESSTTSSHHHHHHHSEE
T ss_pred             eEEEECCCCCCHHHHHHHHhC
Confidence            489999999999999999865

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=96.04  E-value=0.0012  Score=46.99  Aligned_cols=24  Identities=13%  Similarity=0.047  Sum_probs=20.9

Q ss_pred             CceEEEEEeCCCCcHHHHHHHHhc
Q 045087           64 QLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        64 ~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ....++|+|..|.|||||++.+..
T Consensus        43 ~Ge~vaivG~sGsGKSTLl~ll~g   66 (255)
T d2hyda1          43 KGETVAFVGMSGGGKSTLINLIPR   66 (255)
T ss_dssp             TTCEEEEECSTTSSHHHHHTTTTT
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHh
Confidence            346899999999999999998865

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.04  E-value=0.0022  Score=41.99  Aligned_cols=22  Identities=23%  Similarity=0.357  Sum_probs=18.8

Q ss_pred             EEEEEeCCCCcHHHHHHHHhcC
Q 045087           67 AVTILDSIGLDKTAFAAEAYSS   88 (157)
Q Consensus        67 vi~I~G~gGiGKTtLa~~v~~~   88 (157)
                      -|.++|.+|+|||+|..++..+
T Consensus         5 KivvvG~~~vGKTsli~r~~~~   26 (167)
T d1c1ya_           5 KLVVLGSGGVGKSALTVQFVQG   26 (167)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            3678999999999999888654

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.03  E-value=0.0017  Score=42.91  Aligned_cols=22  Identities=14%  Similarity=0.291  Sum_probs=19.0

Q ss_pred             EEEEEeCCCCcHHHHHHHHhcC
Q 045087           67 AVTILDSIGLDKTAFAAEAYSS   88 (157)
Q Consensus        67 vi~I~G~gGiGKTtLa~~v~~~   88 (157)
                      -|.|+|.+|+|||||+.++..+
T Consensus         6 Ki~vvG~~~vGKTsLi~~~~~~   27 (175)
T d2f9la1           6 KVVLIGDSGVGKSNLLSRFTRN   27 (175)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4789999999999999887654

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.97  E-value=0.0025  Score=42.93  Aligned_cols=22  Identities=9%  Similarity=0.235  Sum_probs=19.1

Q ss_pred             EEEEEeCCCCcHHHHHHHHhcC
Q 045087           67 AVTILDSIGLDKTAFAAEAYSS   88 (157)
Q Consensus        67 vi~I~G~gGiGKTtLa~~v~~~   88 (157)
                      -|.|+|.+|+|||||...+..+
T Consensus         8 KivvvG~~~vGKTsli~~l~~~   29 (194)
T d2bcgy1           8 KLLLIGNSGVGKSCLLLRFSDD   29 (194)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEEECCCCcCHHHHHHHHhhC
Confidence            4779999999999999988764

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=95.97  E-value=0.0014  Score=46.35  Aligned_cols=23  Identities=26%  Similarity=0.192  Sum_probs=20.8

Q ss_pred             ceEEEEEeCCCCcHHHHHHHHhc
Q 045087           65 LSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        65 ~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ..+++|+|..|+|||||.+.+..
T Consensus        31 Ge~~~iiG~sGsGKSTll~~i~g   53 (242)
T d1oxxk2          31 GERFGILGPSGAGKTTFMRIIAG   53 (242)
T ss_dssp             TCEEEEECSCHHHHHHHHHHHHT
T ss_pred             CCEEEEECCCCCcHHHHHHHHHc
Confidence            45999999999999999999865

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.94  E-value=0.0021  Score=42.49  Aligned_cols=22  Identities=14%  Similarity=0.080  Sum_probs=18.7

Q ss_pred             EEEEEeCCCCcHHHHHHHHhcC
Q 045087           67 AVTILDSIGLDKTAFAAEAYSS   88 (157)
Q Consensus        67 vi~I~G~gGiGKTtLa~~v~~~   88 (157)
                      -|.|+|.+|+|||+|..++.++
T Consensus         4 KivvvG~~~vGKTsLi~~~~~~   25 (177)
T d1kmqa_           4 KLVIVGDGACGKTCLLIVNSKD   25 (177)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4678899999999999887664

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.92  E-value=0.0021  Score=43.55  Aligned_cols=22  Identities=18%  Similarity=0.119  Sum_probs=19.4

Q ss_pred             EEEEEeCCCCcHHHHHHHHhcC
Q 045087           67 AVTILDSIGLDKTAFAAEAYSS   88 (157)
Q Consensus        67 vi~I~G~gGiGKTtLa~~v~~~   88 (157)
                      -|.|+|.+|+|||||..++...
T Consensus         2 ~V~ivG~~~~GKTsLl~~l~~~   23 (207)
T d2fh5b1           2 AVLFVGLCDSGKTLLFVRLLTG   23 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            5889999999999999888664

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=95.92  E-value=0.0019  Score=42.56  Aligned_cols=25  Identities=8%  Similarity=-0.065  Sum_probs=21.8

Q ss_pred             CceEEEEEeCCCCcHHHHHHHHhcC
Q 045087           64 QLSAVTILDSIGLDKTAFAAEAYSS   88 (157)
Q Consensus        64 ~~~vi~I~G~gGiGKTtLa~~v~~~   88 (157)
                      +...|+|+|.+++|||||..++...
T Consensus        15 ~~~~I~lvG~~NvGKSSL~n~L~~~   39 (188)
T d1puia_          15 TGIEVAFAGRSNAGKSSALNTLTNQ   39 (188)
T ss_dssp             CSEEEEEEECTTSSHHHHHTTTCCC
T ss_pred             cCCEEEEECCCCCCHHHHHHHHhCC
Confidence            4678999999999999999988664

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.91  E-value=0.0022  Score=42.07  Aligned_cols=22  Identities=14%  Similarity=0.243  Sum_probs=18.5

Q ss_pred             EEEEEeCCCCcHHHHHHHHhcC
Q 045087           67 AVTILDSIGLDKTAFAAEAYSS   88 (157)
Q Consensus        67 vi~I~G~gGiGKTtLa~~v~~~   88 (157)
                      -|.++|.+|+|||+|..++..+
T Consensus         5 Ki~vvG~~~vGKTsLi~~~~~~   26 (170)
T d1ek0a_           5 KLVLLGEAAVGKSSIVLRFVSN   26 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            3668999999999999887654

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=95.91  E-value=0.0094  Score=41.99  Aligned_cols=52  Identities=8%  Similarity=-0.042  Sum_probs=31.5

Q ss_pred             CceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCCCCCHHHHHHHHHH
Q 045087           64 QLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPYTCYADQILDIIIK  118 (157)
Q Consensus        64 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~l~~i~~  118 (157)
                      ...++.|.|.+|+|||+++..+..+......+ .+++++..  .+..++...++.
T Consensus        34 ~G~l~vi~G~~G~GKT~~~~~la~~~a~~~g~-~v~~~s~E--~~~~~~~~r~~~   85 (277)
T d1cr2a_          34 GGEVIMVTSGSGMGKSTFVRQQALQWGTAMGK-KVGLAMLE--ESVEETAEDLIG   85 (277)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHHHHHHHTSCC-CEEEEESS--SCHHHHHHHHHH
T ss_pred             CCeEEEEEeCCCCCHHHHHHHHHHhhhhhccc-ceeEeeec--cchhhHHhHHHH
Confidence            34588899999999999998776532222233 34555544  234444444443

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.89  E-value=0.0021  Score=42.82  Aligned_cols=21  Identities=29%  Similarity=0.403  Sum_probs=18.5

Q ss_pred             EEEEeCCCCcHHHHHHHHhcC
Q 045087           68 VTILDSIGLDKTAFAAEAYSS   88 (157)
Q Consensus        68 i~I~G~gGiGKTtLa~~v~~~   88 (157)
                      |.++|.+|+|||||+..+.+.
T Consensus         5 v~vvG~~~vGKSSLi~~l~~~   25 (184)
T d1vg8a_           5 VIILGDSGVGKTSLMNQYVNK   25 (184)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            679999999999999888753

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=95.88  E-value=0.0026  Score=41.13  Aligned_cols=21  Identities=14%  Similarity=0.093  Sum_probs=18.5

Q ss_pred             EEEEEeCCCCcHHHHHHHHhc
Q 045087           67 AVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        67 vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      -|+++|.+|+|||||..++..
T Consensus         3 kI~lvG~~nvGKSsLin~l~~   23 (161)
T d2gj8a1           3 KVVIAGRPNAGKSSLLNALAG   23 (161)
T ss_dssp             EEEEEESTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            367999999999999998874

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.88  E-value=0.0024  Score=42.12  Aligned_cols=22  Identities=18%  Similarity=0.244  Sum_probs=18.8

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhc
Q 045087           66 SAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        66 ~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      --|.++|.+|+|||+|+..+..
T Consensus         4 ~Kv~lvG~~~vGKTsLi~~~~~   25 (172)
T d2g3ya1           4 YRVVLIGEQGVGKSTLANIFAG   25 (172)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHC
T ss_pred             EEEEEECCCCcCHHHHHHHHHh
Confidence            3477999999999999988754

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.84  E-value=0.0025  Score=42.34  Aligned_cols=21  Identities=10%  Similarity=0.064  Sum_probs=17.9

Q ss_pred             EEEEEeCCCCcHHHHHHHHhc
Q 045087           67 AVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        67 vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      -|.++|-+|+|||+|..++..
T Consensus         4 KivllG~~~vGKTsl~~r~~~   24 (195)
T d1svsa1           4 KLLLLGAGESGKSTIVKQMKI   24 (195)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhh
Confidence            367899999999999988744

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.81  E-value=0.0025  Score=42.62  Aligned_cols=19  Identities=16%  Similarity=0.244  Sum_probs=17.0

Q ss_pred             EEEEEeCCCCcHHHHHHHH
Q 045087           67 AVTILDSIGLDKTAFAAEA   85 (157)
Q Consensus        67 vi~I~G~gGiGKTtLa~~v   85 (157)
                      -|.++|.+|+|||||..++
T Consensus         4 KivllG~~~vGKTsll~r~   22 (200)
T d1zcba2           4 KILLLGAGESGKSTFLKQM   22 (200)
T ss_dssp             EEEEECSTTSSHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            4678999999999999887

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.80  E-value=0.0025  Score=41.89  Aligned_cols=22  Identities=18%  Similarity=0.279  Sum_probs=19.0

Q ss_pred             EEEEEeCCCCcHHHHHHHHhcC
Q 045087           67 AVTILDSIGLDKTAFAAEAYSS   88 (157)
Q Consensus        67 vi~I~G~gGiGKTtLa~~v~~~   88 (157)
                      -|.|+|.+|+|||+|+.++...
T Consensus         8 Ki~vvG~~~vGKTsli~~~~~~   29 (170)
T d2g6ba1           8 KVMLVGDSGVGKTCLLVRFKDG   29 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4889999999999999887553

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.80  E-value=0.0032  Score=42.02  Aligned_cols=22  Identities=9%  Similarity=0.101  Sum_probs=19.0

Q ss_pred             EEEEEeCCCCcHHHHHHHHhcC
Q 045087           67 AVTILDSIGLDKTAFAAEAYSS   88 (157)
Q Consensus        67 vi~I~G~gGiGKTtLa~~v~~~   88 (157)
                      -|.|+|.+|+|||+|..++.++
T Consensus        11 Ki~lvG~~~vGKTsLi~r~~~~   32 (185)
T d2atxa1          11 KCVVVGDGAVGKTCLLMSYAND   32 (185)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhhC
Confidence            3788999999999999887764

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.79  E-value=0.0035  Score=41.65  Aligned_cols=23  Identities=9%  Similarity=0.088  Sum_probs=19.5

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhcC
Q 045087           66 SAVTILDSIGLDKTAFAAEAYSS   88 (157)
Q Consensus        66 ~vi~I~G~gGiGKTtLa~~v~~~   88 (157)
                      --|.|+|.+|+|||+|..++..+
T Consensus         6 iKivviG~~~vGKTsli~~~~~~   28 (183)
T d1mh1a_           6 IKCVVVGDGAVGKTCLLISYTTN   28 (183)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHhC
Confidence            35789999999999999887664

>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Dethiobiotin synthetase
species: Escherichia coli [TaxId: 562]

Probab=95.79  E-value=0.0031  Score=42.66  Aligned_cols=22  Identities=9%  Similarity=0.018  Sum_probs=19.2

Q ss_pred             eEEEEEeCC-CCcHHHHHHHHhc
Q 045087           66 SAVTILDSI-GLDKTAFAAEAYS   87 (157)
Q Consensus        66 ~vi~I~G~g-GiGKTtLa~~v~~   87 (157)
                      +.+.|.|-+ |+||||++..+..
T Consensus         2 ~~~~i~gt~~GVGKTtvs~~La~   24 (224)
T d1byia_           2 KRYFVTGTDTEVGKTVASCALLQ   24 (224)
T ss_dssp             EEEEEEESSTTSCHHHHHHHHHH
T ss_pred             ceEEEEECCCCccHHHHHHHHHH
Confidence            467899998 9999999988877

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=95.78  E-value=0.0027  Score=41.40  Aligned_cols=21  Identities=24%  Similarity=0.158  Sum_probs=18.0

Q ss_pred             EEEEeCCCCcHHHHHHHHhcC
Q 045087           68 VTILDSIGLDKTAFAAEAYSS   88 (157)
Q Consensus        68 i~I~G~gGiGKTtLa~~v~~~   88 (157)
                      |.++|.+|+|||||..++...
T Consensus         5 i~i~G~~~~GKTsLl~~l~~~   25 (164)
T d1zd9a1           5 LTLVGLQYSGKTTFVNVIASG   25 (164)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHcC
Confidence            668899999999999888554

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=95.77  E-value=0.0033  Score=41.30  Aligned_cols=24  Identities=25%  Similarity=0.322  Sum_probs=19.8

Q ss_pred             ceEEEEEeCCCCcHHHHHHHHhcC
Q 045087           65 LSAVTILDSIGLDKTAFAAEAYSS   88 (157)
Q Consensus        65 ~~vi~I~G~gGiGKTtLa~~v~~~   88 (157)
                      ..-|.++|.+|+|||+|..++..+
T Consensus         4 ~~KivlvG~~~vGKTsli~~~~~~   27 (168)
T d1u8za_           4 LHKVIMVGSGGVGKSALTLQFMYD   27 (168)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eeEEEEECCCCcCHHHHHHHHHhC
Confidence            345789999999999999887653

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=95.77  E-value=0.0025  Score=41.94  Aligned_cols=22  Identities=14%  Similarity=0.024  Sum_probs=19.1

Q ss_pred             EEEEEeCCCCcHHHHHHHHhcC
Q 045087           67 AVTILDSIGLDKTAFAAEAYSS   88 (157)
Q Consensus        67 vi~I~G~gGiGKTtLa~~v~~~   88 (157)
                      -|.++|.+|+|||||..++.+.
T Consensus        14 kIvlvG~~~vGKTSli~rl~~~   35 (173)
T d1e0sa_          14 RILMLGLDAAGKTTILYKLKLG   35 (173)
T ss_dssp             EEEEEEETTSSHHHHHHHTTCC
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            3668999999999999998764

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.76  E-value=0.0019  Score=42.58  Aligned_cols=22  Identities=18%  Similarity=0.335  Sum_probs=17.6

Q ss_pred             EEEEEeCCCCcHHHHHHHHhcC
Q 045087           67 AVTILDSIGLDKTAFAAEAYSS   88 (157)
Q Consensus        67 vi~I~G~gGiGKTtLa~~v~~~   88 (157)
                      -|.++|.+|+|||+|..++.++
T Consensus         5 Ki~vvG~~~vGKTsli~~~~~~   26 (170)
T d1i2ma_           5 KLVLVGDGGTGKTTFVKRHLTG   26 (170)
T ss_dssp             EEEEEECTTSSHHHHHHTTC--
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            3678899999999999987664

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=95.74  E-value=0.0033  Score=43.63  Aligned_cols=22  Identities=14%  Similarity=-0.065  Sum_probs=19.9

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhc
Q 045087           66 SAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        66 ~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      .+|+|+|..|+||||+|..+.+
T Consensus         2 ~iIgiTG~igSGKsTva~~l~e   23 (241)
T d1deka_           2 KLIFLSGVKRSGKDTTADFIMS   23 (241)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            5899999999999999998855

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=95.72  E-value=0.0021  Score=44.99  Aligned_cols=23  Identities=13%  Similarity=0.157  Sum_probs=20.7

Q ss_pred             ceEEEEEeCCCCcHHHHHHHHhc
Q 045087           65 LSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        65 ~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ..+++|+|..|.|||||.+.+..
T Consensus        25 Gei~~iiG~nGaGKSTLl~~l~G   47 (231)
T d1l7vc_          25 GEILHLVGPNGAGKSTLLARMAG   47 (231)
T ss_dssp             TCEEECBCCTTSSHHHHHHHHHT
T ss_pred             CCEEEEECCCCCcHHHHHHHHhC
Confidence            45999999999999999998866

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.65  E-value=0.0038  Score=41.00  Aligned_cols=22  Identities=14%  Similarity=0.374  Sum_probs=18.8

Q ss_pred             EEEEEeCCCCcHHHHHHHHhcC
Q 045087           67 AVTILDSIGLDKTAFAAEAYSS   88 (157)
Q Consensus        67 vi~I~G~gGiGKTtLa~~v~~~   88 (157)
                      -|.++|.+|+|||+|...+.++
T Consensus         6 Ki~lvG~~~vGKTsll~~~~~~   27 (169)
T d1x1ra1           6 KLVVVGDGGVGKSALTIQFFQK   27 (169)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4668899999999999988764

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=95.65  E-value=0.0034  Score=41.60  Aligned_cols=22  Identities=14%  Similarity=0.212  Sum_probs=19.4

Q ss_pred             EEEEEeCCCCcHHHHHHHHhcC
Q 045087           67 AVTILDSIGLDKTAFAAEAYSS   88 (157)
Q Consensus        67 vi~I~G~gGiGKTtLa~~v~~~   88 (157)
                      -|+|+|.+|+|||||..++...
T Consensus        10 kV~iiG~~~~GKSTLin~l~~~   31 (186)
T d1mkya2          10 KVAIVGRPNVGKSTLFNAILNK   31 (186)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHHCC
Confidence            4789999999999999888763

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.64  E-value=0.0041  Score=41.34  Aligned_cols=22  Identities=14%  Similarity=0.098  Sum_probs=18.7

Q ss_pred             EEEEEeCCCCcHHHHHHHHhcC
Q 045087           67 AVTILDSIGLDKTAFAAEAYSS   88 (157)
Q Consensus        67 vi~I~G~gGiGKTtLa~~v~~~   88 (157)
                      -|.++|.+|+|||+|...+.+.
T Consensus         4 KivliG~~~vGKTsli~r~~~~   25 (179)
T d1m7ba_           4 KIVVVGDSQCGKTALLHVFAKD   25 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            3678999999999999888664

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.64  E-value=0.0033  Score=41.57  Aligned_cols=21  Identities=14%  Similarity=0.290  Sum_probs=18.4

Q ss_pred             EEEEeCCCCcHHHHHHHHhcC
Q 045087           68 VTILDSIGLDKTAFAAEAYSS   88 (157)
Q Consensus        68 i~I~G~gGiGKTtLa~~v~~~   88 (157)
                      |.++|.+|+|||+|..++..+
T Consensus        10 i~vvG~~~vGKTsli~~l~~~   30 (177)
T d1x3sa1          10 ILIIGESGVGKSSLLLRFTDD   30 (177)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            779999999999999987653

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.60  E-value=0.0037  Score=41.12  Aligned_cols=22  Identities=18%  Similarity=0.306  Sum_probs=18.7

Q ss_pred             EEEEEeCCCCcHHHHHHHHhcC
Q 045087           67 AVTILDSIGLDKTAFAAEAYSS   88 (157)
Q Consensus        67 vi~I~G~gGiGKTtLa~~v~~~   88 (157)
                      -|.++|.+|+|||||...+.++
T Consensus         8 KI~vvG~~~vGKSSli~~~~~~   29 (174)
T d1wmsa_           8 KVILLGDGGVGKSSLMNRYVTN   29 (174)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4789999999999999877653

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.51  E-value=0.004  Score=41.39  Aligned_cols=21  Identities=14%  Similarity=0.156  Sum_probs=17.9

Q ss_pred             EEEEEeCCCCcHHHHHHHHhc
Q 045087           67 AVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        67 vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      -|.++|.+|+|||+|..++..
T Consensus         4 Kiv~lG~~~vGKTsll~r~~~   24 (200)
T d2bcjq2           4 KLLLLGTGESGKSTFIKQMRI   24 (200)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            367899999999999988754

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.48  E-value=0.005  Score=41.20  Aligned_cols=21  Identities=10%  Similarity=0.131  Sum_probs=18.0

Q ss_pred             EEEEeCCCCcHHHHHHHHhcC
Q 045087           68 VTILDSIGLDKTAFAAEAYSS   88 (157)
Q Consensus        68 i~I~G~gGiGKTtLa~~v~~~   88 (157)
                      |.++|.+|+|||+|..++..+
T Consensus         6 vvllG~~~vGKTSli~r~~~~   26 (191)
T d2ngra_           6 CVVVGDGAVGKTCLLISYTTN   26 (191)
T ss_dssp             EEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            678899999999999887654

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=95.45  E-value=0.0074  Score=39.71  Aligned_cols=43  Identities=14%  Similarity=0.070  Sum_probs=29.3

Q ss_pred             ccHHHHHHHHHHHhc-----CCCCceEEEEEeCCCCcHHHHHHHHhcC
Q 045087           46 GLDDRMEELLDLLIE-----GPPQLSAVTILDSIGLDKTAFAAEAYSS   88 (157)
Q Consensus        46 Gr~~~~~~l~~~L~~-----~~~~~~vi~I~G~gGiGKTtLa~~v~~~   88 (157)
                      .-+.+..++-+.|..     .....-+|.+.|.=|+||||+++.+.+.
T Consensus         9 ~~e~~t~~lg~~la~~l~~~~~~~g~ii~L~G~LGaGKTtfvr~~~~~   56 (158)
T d1htwa_           9 PDEFSMLRFGKKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQG   56 (158)
T ss_dssp             CSHHHHHHHHHHHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHhccCCCCeEEEEecCCCccHHHHHHHHHhh
Confidence            334455555444432     2223558999999999999999999774

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=95.44  E-value=0.0047  Score=41.48  Aligned_cols=22  Identities=18%  Similarity=0.267  Sum_probs=19.3

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhc
Q 045087           66 SAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        66 ~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      .-+.|.|.+|+||||||..+..
T Consensus        16 ~gvli~G~sG~GKS~lal~l~~   37 (177)
T d1knxa2          16 VGVLLTGRSGIGKSECALDLIN   37 (177)
T ss_dssp             EEEEEEESSSSSHHHHHHHHHT
T ss_pred             EEEEEEcCCCCCHHHHHHHHHH
Confidence            4678899999999999988766

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.44  E-value=0.0042  Score=41.24  Aligned_cols=22  Identities=9%  Similarity=0.157  Sum_probs=18.9

Q ss_pred             EEEEEeCCCCcHHHHHHHHhcC
Q 045087           67 AVTILDSIGLDKTAFAAEAYSS   88 (157)
Q Consensus        67 vi~I~G~gGiGKTtLa~~v~~~   88 (157)
                      -|.++|.+|+|||+|..++.+.
T Consensus         7 ki~vlG~~~vGKTsLi~~~~~~   28 (175)
T d2bmja1           7 RLGVLGDARSGKSSLIHRFLTG   28 (175)
T ss_dssp             EEEEECCTTTTHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4778999999999999887654

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=95.41  E-value=0.0065  Score=41.62  Aligned_cols=37  Identities=16%  Similarity=0.242  Sum_probs=29.1

Q ss_pred             HHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087           50 RMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        50 ~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      =+..|..+|. +.++...+.++|+++.|||++|..+.+
T Consensus        39 Fl~~l~~~l~-~~PKkn~i~~~GP~~TGKS~f~~sl~~   75 (205)
T d1tuea_          39 FLGALKSFLK-GTPKKNCLVFCGPANTGKSYFGMSFIH   75 (205)
T ss_dssp             HHHHHHHHHH-TCTTCSEEEEESCGGGCHHHHHHHHHH
T ss_pred             HHHHHHHHHc-CCCCceEEEEECCCCccHHHHHHHHHH
Confidence            3566777764 446778999999999999999987755

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.34  E-value=0.0026  Score=41.94  Aligned_cols=22  Identities=14%  Similarity=0.194  Sum_probs=8.7

Q ss_pred             EEEEEeCCCCcHHHHHHHHhcC
Q 045087           67 AVTILDSIGLDKTAFAAEAYSS   88 (157)
Q Consensus        67 vi~I~G~gGiGKTtLa~~v~~~   88 (157)
                      -|.++|-+|+|||||..++..+
T Consensus         8 Ki~vvG~~~vGKTsLi~~l~~~   29 (173)
T d2fu5c1           8 KLLLIGDSGVGKTCVLFRFSED   29 (173)
T ss_dssp             EEEEECCCCC------------
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            3778999999999999877664

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=95.31  E-value=0.0047  Score=41.43  Aligned_cols=22  Identities=27%  Similarity=0.240  Sum_probs=19.3

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhc
Q 045087           66 SAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        66 ~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      .-+.|.|.+|+||||||..+..
T Consensus        15 ~gvl~~G~sG~GKStlal~l~~   36 (176)
T d1kkma_          15 LGVLITGDSGVGKSETALELVQ   36 (176)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEEEeCCCCCHHHHHHHHHH
Confidence            5688999999999999988766

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=95.19  E-value=0.0057  Score=40.71  Aligned_cols=22  Identities=27%  Similarity=0.276  Sum_probs=19.3

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhc
Q 045087           66 SAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        66 ~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      .-+.|.|.+|+||||+|..+.+
T Consensus        16 ~gvli~G~sg~GKS~la~~l~~   37 (169)
T d1ko7a2          16 VGVLITGDSGIGKSETALELIK   37 (169)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEEeCCCCCHHHHHHHHHH
Confidence            4678999999999999988766

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=95.15  E-value=0.0058  Score=42.06  Aligned_cols=22  Identities=9%  Similarity=0.067  Sum_probs=18.7

Q ss_pred             ceEEEEEeCCCCcHHHHHHHHh
Q 045087           65 LSAVTILDSIGLDKTAFAAEAY   86 (157)
Q Consensus        65 ~~vi~I~G~gGiGKTtLa~~v~   86 (157)
                      ..-|.++|.+|+|||||..++.
T Consensus         6 ~~KilllG~~~vGKTsll~~~~   27 (221)
T d1azta2           6 THRLLLLGAGESGKSTIVKQMR   27 (221)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHH
T ss_pred             cCEEEEECCCCCCHHHHHHHHh
Confidence            3467899999999999998874

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=95.06  E-value=0.013  Score=43.54  Aligned_cols=64  Identities=16%  Similarity=0.070  Sum_probs=34.5

Q ss_pred             HHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhcCc-ccccccCeeEEEEcCCCCCHHHHHHHH
Q 045087           48 DDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSSN-YMKHYFDCHAWVQEPYTCYADQILDII  116 (157)
Q Consensus        48 ~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~-~~~~~F~~~~wv~~~~~~~~~~~l~~i  116 (157)
                      +.+...+...+.     .++..|.|.+|.||||++..+.... +....-...+.+..+..-....+.+.+
T Consensus       151 ~~Q~~A~~~al~-----~~~~vI~G~pGTGKTt~i~~~l~~l~~~~~~~~~~I~l~ApTgkAA~~L~e~~  215 (359)
T d1w36d1         151 NWQKVAAAVALT-----RRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESL  215 (359)
T ss_dssp             CHHHHHHHHHHT-----BSEEEEECCTTSTHHHHHHHHHHHHHHTCSSCCCCEEEEBSSHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHc-----CCeEEEEcCCCCCceehHHHHHHHHHHHHhccCCeEEEecCcHHHHHHHHHHH
Confidence            344455544442     3588999999999999875543310 111111235666655543344444433

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=94.90  E-value=0.017  Score=41.08  Aligned_cols=36  Identities=11%  Similarity=0.047  Sum_probs=27.3

Q ss_pred             HHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087           52 EELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        52 ~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ..|..+|....++...+.++|.|+.|||+++..+.+
T Consensus        91 ~~l~~~L~~~~~k~n~~~l~G~~~tGKS~f~~~i~~  126 (267)
T d1u0ja_          91 SVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAH  126 (267)
T ss_dssp             HHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred             HHHHHHHcCCCCccEEEEEEcCCCCCHHHHHHHHHH
Confidence            344555555546677889999999999999988755

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=94.88  E-value=0.015  Score=42.73  Aligned_cols=23  Identities=13%  Similarity=0.140  Sum_probs=19.7

Q ss_pred             ceEEEEEeCCCCcHHHHHHHHhc
Q 045087           65 LSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        65 ~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      .-.|.|-|.-|+||||+++.+.+
T Consensus         6 ~~rI~iEG~iGsGKSTl~~~L~~   28 (333)
T d1p6xa_           6 IVRIYLDGVYGIGKSTTGRVMAS   28 (333)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHS
T ss_pred             eEEEEEECCccCCHHHHHHHHHH
Confidence            34566779999999999999988

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=94.84  E-value=0.0095  Score=42.70  Aligned_cols=24  Identities=21%  Similarity=0.206  Sum_probs=20.9

Q ss_pred             CceEEEEEeCCCCcHHHHHHHHhc
Q 045087           64 QLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        64 ~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      +.+-|+|+|-+|.|||||+.++..
T Consensus         5 ~iRni~i~gh~~~GKTtL~e~ll~   28 (276)
T d2bv3a2           5 RLRNIGIAAHIDAGKTTTTERILY   28 (276)
T ss_dssp             GEEEEEEEECTTSCHHHHHHHHHH
T ss_pred             hceEEEEEeCCCCCHHHHHHHHHH
Confidence            467899999999999999988753

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=94.76  E-value=0.018  Score=42.09  Aligned_cols=21  Identities=19%  Similarity=0.290  Sum_probs=19.1

Q ss_pred             EEEEEeCCCCcHHHHHHHHhc
Q 045087           67 AVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        67 vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      -+.|.|..|.||||+..+++.
T Consensus       168 nili~G~tgSGKTT~l~al~~  188 (323)
T d1g6oa_         168 NVIVCGGTGSGKTTYIKSIME  188 (323)
T ss_dssp             CEEEEESTTSSHHHHHHHHGG
T ss_pred             CEEEEeeccccchHHHHHHhh
Confidence            478899999999999999977

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=94.70  E-value=0.0021  Score=41.51  Aligned_cols=20  Identities=10%  Similarity=0.222  Sum_probs=18.3

Q ss_pred             EEEEeCCCCcHHHHHHHHhc
Q 045087           68 VTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        68 i~I~G~gGiGKTtLa~~v~~   87 (157)
                      |+++|.+|+|||||..++..
T Consensus         3 I~liG~~n~GKSSLin~l~g   22 (160)
T d1xzpa2           3 MVIVGKPNVGKSTLLNRLLN   22 (160)
T ss_dssp             EEEECCHHHHTCHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhC
Confidence            78999999999999999865

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=94.33  E-value=0.014  Score=40.29  Aligned_cols=23  Identities=17%  Similarity=0.231  Sum_probs=20.0

Q ss_pred             ceEEEEEeCCCCcHHHHHHHHhc
Q 045087           65 LSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        65 ~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      .++|+|+|-+..|||||..++..
T Consensus         5 ~p~IaIiGh~d~GKSTL~~~L~~   27 (227)
T d1g7sa4           5 SPIVSVLGHVDHGKTTLLDHIRG   27 (227)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEEEeCCCccHHHHHHHHHh
Confidence            35799999999999999988854

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.32  E-value=0.033  Score=39.73  Aligned_cols=32  Identities=13%  Similarity=0.094  Sum_probs=26.3

Q ss_pred             HHhcCCCCceEEEEEeCCCCcHHHHHHHHhcC
Q 045087           57 LLIEGPPQLSAVTILDSIGLDKTAFAAEAYSS   88 (157)
Q Consensus        57 ~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~   88 (157)
                      .|..-.....+|+|+|.-+.|||+|+..+++.
T Consensus        24 ~l~~~~~~v~vvsi~G~~~sGKS~llN~l~~~   55 (277)
T d1f5na2          24 ILSAITQPMVVVAIVGLYRTGKSYLMNKLAGK   55 (277)
T ss_dssp             HHHTCCSBEEEEEEEEBTTSSHHHHHHHHTTC
T ss_pred             HHHcCCCCEEEEEEECCCCCCHHHHHHHHcCC
Confidence            44444456899999999999999999999874

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=94.26  E-value=0.015  Score=38.44  Aligned_cols=57  Identities=9%  Similarity=-0.021  Sum_probs=34.9

Q ss_pred             EEEEEeCCCCcHHHHHHHHhcCcccc-----------cc-c--CeeE------EEEcCCCCCHHHHHHHHHHHhCCC
Q 045087           67 AVTILDSIGLDKTAFAAEAYSSNYMK-----------HY-F--DCHA------WVQEPYTCYADQILDIIIKFLMPS  123 (157)
Q Consensus        67 vi~I~G~gGiGKTtLa~~v~~~~~~~-----------~~-F--~~~~------wv~~~~~~~~~~~l~~i~~~l~~~  123 (157)
                      -|+|+|.+.+|||||..++.......           .. .  ....      -+.........++.......+...
T Consensus         7 nIaiiG~~naGKSTL~n~L~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~l~~~   83 (179)
T d1wb1a4           7 NLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHADLIRAVVSAADII   83 (179)
T ss_dssp             EEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETTEEEEECCCSSHHHHHHHHHHHTTSC
T ss_pred             EEEEEeCCCCcHHHHHHHHHHhcCceecccccceeeeeeeccccccccccCCccccccccccccccccchhhhhhhc
Confidence            58999999999999999887521110           00 0  0111      123445566777888777777653

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=94.20  E-value=0.017  Score=41.11  Aligned_cols=22  Identities=18%  Similarity=0.353  Sum_probs=19.3

Q ss_pred             ceEEEEEeCCCCcHHHHHHHHh
Q 045087           65 LSAVTILDSIGLDKTAFAAEAY   86 (157)
Q Consensus        65 ~~vi~I~G~gGiGKTtLa~~v~   86 (157)
                      .+.|+|+|-.|.|||||+.++.
T Consensus         2 iRNv~iiGh~~~GKTtL~e~ll   23 (267)
T d2dy1a2           2 IRTVALVGHAGSGKTTLTEALL   23 (267)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHH
T ss_pred             eeEEEEEcCCCCcHHHHHHHHH
Confidence            3678999999999999998874

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=94.16  E-value=0.0064  Score=42.50  Aligned_cols=23  Identities=9%  Similarity=0.127  Sum_probs=18.8

Q ss_pred             EEEEEeCCCCcHHHHHHHHhcCc
Q 045087           67 AVTILDSIGLDKTAFAAEAYSSN   89 (157)
Q Consensus        67 vi~I~G~gGiGKTtLa~~v~~~~   89 (157)
                      ...++|.+|+|||||..++..+.
T Consensus        99 ~~vl~G~SGVGKSSLiN~L~~~~  121 (231)
T d1t9ha2          99 TTVFAGQSGVGKSSLLNAISPEL  121 (231)
T ss_dssp             EEEEEESHHHHHHHHHHHHCC--
T ss_pred             eEEEECCCCccHHHHHHhhccHh
Confidence            55688999999999999998753

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=94.01  E-value=0.037  Score=41.50  Aligned_cols=40  Identities=10%  Similarity=0.197  Sum_probs=29.1

Q ss_pred             cccH-HHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087           45 VGLD-DRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        45 vGr~-~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      .|.. .+.+.+.+++...   ...|.|.|+.|.||||....+.+
T Consensus       140 LG~~~~~~~~l~~l~~~~---~GliLvtGpTGSGKSTTl~~~l~  180 (401)
T d1p9ra_         140 LGMTAHNHDNFRRLIKRP---HGIILVTGPTGSGKSTTLYAGLQ  180 (401)
T ss_dssp             SCCCHHHHHHHHHHHTSS---SEEEEEECSTTSCHHHHHHHHHH
T ss_pred             hcccHHHHHHHHHHHhhh---hceEEEEcCCCCCccHHHHHHhh
Confidence            4544 4555665555443   57999999999999999888766

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=93.91  E-value=0.16  Score=35.02  Aligned_cols=23  Identities=9%  Similarity=-0.029  Sum_probs=19.9

Q ss_pred             ceEEEEEeCCCCcHHHHHHHHhc
Q 045087           65 LSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        65 ~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      .+++.|+|+...||||+.+.+.-
T Consensus        41 ~~~~iiTGpN~~GKSt~lk~i~l   63 (234)
T d1wb9a2          41 RRMLIITGPNMGGKSTYMRQTAL   63 (234)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEEeccCchhhHHHHHHHHH
Confidence            46889999999999999988744

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.62  E-value=0.024  Score=42.50  Aligned_cols=23  Identities=17%  Similarity=0.270  Sum_probs=20.0

Q ss_pred             ceEEEEEeCCCCcHHHHHHHHhc
Q 045087           65 LSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        65 ~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      .--|+|+|.+|+|||||..++..
T Consensus        56 ~l~Iai~G~~n~GKSSLiNaL~G   78 (400)
T d1tq4a_          56 VLNVAVTGETGSGKSSFINTLRG   78 (400)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHT
T ss_pred             CcEEEEECCCCCCHHHHHHHHhC
Confidence            34689999999999999998864

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=93.55  E-value=0.023  Score=41.64  Aligned_cols=22  Identities=23%  Similarity=0.255  Sum_probs=19.1

Q ss_pred             EEEEEeCCCCcHHHHHHHHhcC
Q 045087           67 AVTILDSIGLDKTAFAAEAYSS   88 (157)
Q Consensus        67 vi~I~G~gGiGKTtLa~~v~~~   88 (157)
                      .|+|-|.-|+||||+++.+.+.
T Consensus         7 rI~IEG~iGsGKSTl~~~L~~~   28 (331)
T d1osna_           7 RIYLDGAYGIGKTTAAEEFLHH   28 (331)
T ss_dssp             EEEEEESSSSCTTHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4677799999999999999873

>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Herpes simplex virus type 1, different strains [TaxId: 10298]

Probab=93.51  E-value=0.02  Score=41.94  Aligned_cols=22  Identities=23%  Similarity=0.110  Sum_probs=19.3

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhc
Q 045087           66 SAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        66 ~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ..|+|-|.-|+||||+++.+.+
T Consensus         5 lrI~IEG~iGsGKTTl~~~La~   26 (329)
T d1e2ka_           5 LRVYIDGPHGMGKTTTTQLLVA   26 (329)
T ss_dssp             EEEEECSCTTSSHHHHHHHHTC
T ss_pred             eEEEEECCcCCCHHHHHHHHHH
Confidence            4578889999999999998876

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=93.37  E-value=0.047  Score=34.01  Aligned_cols=52  Identities=13%  Similarity=0.087  Sum_probs=35.5

Q ss_pred             CceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCCCCCHHHHHHHHHHHhC
Q 045087           64 QLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPYTCYADQILDIIIKFLM  121 (157)
Q Consensus        64 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~l~~i~~~l~  121 (157)
                      ..++..|+++.|.|||+++-.++.+      ...++.+.++...-.++..+.+...+.
T Consensus         7 ~~~~~ll~apTGsGKT~~~~~~~~~------~~~~vli~~P~~~l~~q~~~~~~~~~~   58 (136)
T d1a1va1           7 SFQVAHLHAPTGSGKSTKVPAAYAA------QGYKVLVLNPSVAATLGFGAYMSKAHG   58 (136)
T ss_dssp             SCEEEEEECCTTSCTTTHHHHHHHT------TTCCEEEEESCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEEeCCCCCHHHHHHHHHHH------cCCcEEEEcChHHHHHHHHHHHHHHhh
Confidence            4577888999999999988655542      234577777765556666666655544

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.92  E-value=0.04  Score=40.50  Aligned_cols=34  Identities=6%  Similarity=0.251  Sum_probs=26.0

Q ss_pred             HHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHh
Q 045087           52 EELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAY   86 (157)
Q Consensus        52 ~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~   86 (157)
                      +.+.+++.. ..+.+-|+|+|-.|.|||||+..+.
T Consensus         5 ~~~~~lm~~-~~~IRNI~iiGhvd~GKTTL~d~Ll   38 (341)
T d1n0ua2           5 DQMRSLMDK-VTNVRNMSVIAHVDHGKSTLTDSLV   38 (341)
T ss_dssp             HHHHHHHHC-GGGEEEEEEECCGGGTHHHHHHHHH
T ss_pred             HHHHHHhcC-cccCcEEEEEeCCCCcHHHHHHHHH
Confidence            445555443 3467889999999999999998774

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=92.71  E-value=0.0096  Score=39.11  Aligned_cols=20  Identities=20%  Similarity=0.134  Sum_probs=16.9

Q ss_pred             EEEEEeCCCCcHHHHHHHHh
Q 045087           67 AVTILDSIGLDKTAFAAEAY   86 (157)
Q Consensus        67 vi~I~G~gGiGKTtLa~~v~   86 (157)
                      +..|+|..|+||||+..+++
T Consensus        26 ~tvi~G~NGsGKStil~Ai~   45 (222)
T d1qhla_          26 VTTLSGGNGAGKSTTMAAFV   45 (222)
T ss_dssp             HHHHHSCCSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHH
Confidence            45577999999999998884

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=92.66  E-value=0.027  Score=39.75  Aligned_cols=16  Identities=25%  Similarity=0.302  Sum_probs=13.3

Q ss_pred             EEEEEeCCCCcHHHHH
Q 045087           67 AVTILDSIGLDKTAFA   82 (157)
Q Consensus        67 vi~I~G~gGiGKTtLa   82 (157)
                      .+.|.|.+|.||||.+
T Consensus        16 ~~lI~g~aGTGKTt~l   31 (306)
T d1uaaa1          16 PCLVLAGAGSGKTRVI   31 (306)
T ss_dssp             EEEECCCTTSCHHHHH
T ss_pred             CEEEEeeCCccHHHHH
Confidence            4678899999999764

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=92.60  E-value=0.034  Score=39.40  Aligned_cols=22  Identities=9%  Similarity=0.075  Sum_probs=19.5

Q ss_pred             EEEEEeCCCCcHHHHHHHHhcC
Q 045087           67 AVTILDSIGLDKTAFAAEAYSS   88 (157)
Q Consensus        67 vi~I~G~gGiGKTtLa~~v~~~   88 (157)
                      -|+|+|+|.+|||||-.++-..
T Consensus         4 ~~GivG~Pn~GKSTlf~~lt~~   25 (278)
T d1jala1           4 KCGIVGLPNVGKSTLFNALTKA   25 (278)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHT
T ss_pred             eEEEECCCCCCHHHHHHHHHCC
Confidence            5899999999999999988753

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=92.55  E-value=0.044  Score=38.76  Aligned_cols=26  Identities=12%  Similarity=0.114  Sum_probs=22.2

Q ss_pred             CceEEEEEeCCCCcHHHHHHHHhcCc
Q 045087           64 QLSAVTILDSIGLDKTAFAAEAYSSN   89 (157)
Q Consensus        64 ~~~vi~I~G~gGiGKTtLa~~v~~~~   89 (157)
                      ..-.++|+|++.+|||||...+....
T Consensus       111 ~~~~v~vvG~PNvGKSsliN~L~~~~  136 (273)
T d1puja_         111 RAIRALIIGIPNVGKSTLINRLAKKN  136 (273)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred             CceEEEEEecCccchhhhhhhhhccc
Confidence            34568999999999999999998854

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=92.33  E-value=0.037  Score=39.41  Aligned_cols=16  Identities=25%  Similarity=0.324  Sum_probs=13.2

Q ss_pred             EEEEEeCCCCcHHHHH
Q 045087           67 AVTILDSIGLDKTAFA   82 (157)
Q Consensus        67 vi~I~G~gGiGKTtLa   82 (157)
                      .+.|.|.+|.||||.+
T Consensus        26 ~~lV~g~aGSGKTt~l   41 (318)
T d1pjra1          26 PLLIMAGAGSGKTRVL   41 (318)
T ss_dssp             CEEEEECTTSCHHHHH
T ss_pred             CEEEEecCCccHHHHH
Confidence            3668899999999765

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=92.04  E-value=0.044  Score=39.17  Aligned_cols=23  Identities=17%  Similarity=0.141  Sum_probs=20.3

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhcC
Q 045087           66 SAVTILDSIGLDKTAFAAEAYSS   88 (157)
Q Consensus        66 ~vi~I~G~gGiGKTtLa~~v~~~   88 (157)
                      --++|+|.|.+|||||-.++...
T Consensus        11 ~kiGivG~Pn~GKSTlfnalT~~   33 (296)
T d1ni3a1          11 LKTGIVGMPNVGKSTFFRAITKS   33 (296)
T ss_dssp             CEEEEEECSSSSHHHHHHHHHHS
T ss_pred             cEEEEECCCCCCHHHHHHHHHCC
Confidence            35999999999999999999764

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=91.96  E-value=0.049  Score=36.83  Aligned_cols=20  Identities=20%  Similarity=0.230  Sum_probs=17.7

Q ss_pred             EEEEEeCCCCcHHHHHHHHh
Q 045087           67 AVTILDSIGLDKTAFAAEAY   86 (157)
Q Consensus        67 vi~I~G~gGiGKTtLa~~v~   86 (157)
                      -|+|+|-.+.|||||+.++.
T Consensus         5 ni~iiGhvd~GKSTL~~~Ll   24 (204)
T d2c78a3           5 NVGTIGHVDHGKTTLTAALT   24 (204)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEEeCCCCcHHHHHHHHH
Confidence            37899999999999998874

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=91.95  E-value=0.54  Score=32.00  Aligned_cols=22  Identities=18%  Similarity=0.084  Sum_probs=18.7

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhc
Q 045087           66 SAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        66 ~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      .++.|+|+...||||+.+.+.-
T Consensus        36 ~~~iiTGpN~~GKSt~lk~i~l   57 (224)
T d1ewqa2          36 ELVLITGPNMAGKSTFLRQTAL   57 (224)
T ss_dssp             CEEEEESCSSSSHHHHHHHHHH
T ss_pred             cEEEEECCCccccchhhhhhHH
Confidence            3788999999999999987743

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=91.64  E-value=0.053  Score=38.95  Aligned_cols=20  Identities=15%  Similarity=0.273  Sum_probs=18.4

Q ss_pred             EEEEeCCCCcHHHHHHHHhc
Q 045087           68 VTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        68 i~I~G~gGiGKTtLa~~v~~   87 (157)
                      |+|+|.+.+|||||-.++-.
T Consensus         3 v~lvG~pn~GKStlfn~lt~   22 (319)
T d1wxqa1           3 IGVVGKPNVGKSTFFSAATL   22 (319)
T ss_dssp             EEEEECTTSSHHHHHHHHHC
T ss_pred             EeEECCCCCCHHHHHHHHHC
Confidence            89999999999999999855

>d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.43  E-value=0.085  Score=32.83  Aligned_cols=22  Identities=9%  Similarity=0.212  Sum_probs=19.1

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhc
Q 045087           66 SAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        66 ~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      =.|.+.|..|.||+|||.++..
T Consensus         7 f~i~~tg~~~~gk~~ia~al~~   28 (122)
T d1g8fa3           7 FSIVLGNSLTVSREQLSIALLS   28 (122)
T ss_dssp             EEEEECTTCCSCHHHHHHHHHH
T ss_pred             eEEEEeCCCCCCHHHHHHHHHH
Confidence            3677889999999999998865

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=89.83  E-value=0.08  Score=39.34  Aligned_cols=23  Identities=13%  Similarity=0.098  Sum_probs=18.4

Q ss_pred             ceEEEEEeCCCCcHHHHHHHHhc
Q 045087           65 LSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        65 ~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      .+.+.|+|..|.|||+++..+..
T Consensus        50 ~~H~~I~G~tGsGKT~~l~~li~   72 (433)
T d1e9ra_          50 PRHLLVNGATGTGKSVLLRELAY   72 (433)
T ss_dssp             GGCEEEEECTTSSHHHHHHHHHH
T ss_pred             cceEEEEeCCCCcHHHHHHHHHH
Confidence            35689999999999998765543

>d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DNA repair protein RAD25
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=89.49  E-value=0.58  Score=31.07  Aligned_cols=42  Identities=21%  Similarity=0.140  Sum_probs=29.1

Q ss_pred             CCCccccHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087           41 SRDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        41 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      ...+--|+-+.+.+..++..+    + ..|++..|.|||.+|..+..
T Consensus        66 ~~~~~Lr~yQ~eav~~~~~~~----~-~ll~~~tG~GKT~~a~~~~~  107 (206)
T d2fz4a1          66 DAEISLRDYQEKALERWLVDK----R-GCIVLPTGSGKTHVAMAAIN  107 (206)
T ss_dssp             CCCCCCCHHHHHHHHHHTTTS----E-EEEEESSSTTHHHHHHHHHH
T ss_pred             CCCCCcCHHHHHHHHHHHhCC----C-cEEEeCCCCCceehHHhHHH
Confidence            345556777888887665332    2 34678899999998877665

>d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Thermus thermophilus [TaxId: 274]

Probab=89.10  E-value=0.1  Score=37.87  Aligned_cols=18  Identities=17%  Similarity=0.285  Sum_probs=15.1

Q ss_pred             eEEEEEeCCCCcHHHHHH
Q 045087           66 SAVTILDSIGLDKTAFAA   83 (157)
Q Consensus        66 ~vi~I~G~gGiGKTtLa~   83 (157)
                      .+-.+.|.+|.|||||..
T Consensus        15 ~valffGLSGTGKTTLs~   32 (318)
T d1j3ba1          15 DVAVFFGLSGTGKTTLST   32 (318)
T ss_dssp             CEEEEEECTTSCHHHHTC
T ss_pred             CEEEEEccCCCCcccccc
Confidence            456778999999999974

>d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Escherichia coli [TaxId: 562]

Probab=89.01  E-value=0.11  Score=37.61  Aligned_cols=18  Identities=17%  Similarity=0.285  Sum_probs=14.9

Q ss_pred             eEEEEEeCCCCcHHHHHH
Q 045087           66 SAVTILDSIGLDKTAFAA   83 (157)
Q Consensus        66 ~vi~I~G~gGiGKTtLa~   83 (157)
                      .+-.+.|.+|.|||||..
T Consensus        15 ~~alfFGLSGTGKTTLs~   32 (313)
T d2olra1          15 DVAVFFGLSGTGKTTLST   32 (313)
T ss_dssp             CEEEEECSTTSSHHHHHC
T ss_pred             CEEEEEccCCCCccccee
Confidence            355678999999999983

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=88.67  E-value=0.17  Score=29.90  Aligned_cols=24  Identities=8%  Similarity=0.144  Sum_probs=20.7

Q ss_pred             CceEEEEEeCCCCcHHHHHHHHhc
Q 045087           64 QLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        64 ~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      +.+-+-+.|.||+|.+.||+.+.+
T Consensus         7 ~~~~ihfiGigG~GMs~LA~~L~~   30 (96)
T d1p3da1           7 RVQQIHFIGIGGAGMSGIAEILLN   30 (96)
T ss_dssp             TCCEEEEETTTSTTHHHHHHHHHH
T ss_pred             hCCEEEEEEECHHHHHHHHHHHHh
Confidence            456788999999999999998766

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=88.34  E-value=0.14  Score=37.35  Aligned_cols=20  Identities=15%  Similarity=0.225  Sum_probs=17.6

Q ss_pred             eEEEEEeCCCCcHHHHHHHH
Q 045087           66 SAVTILDSIGLDKTAFAAEA   85 (157)
Q Consensus        66 ~vi~I~G~gGiGKTtLa~~v   85 (157)
                      .+-.|+|.-|.|||++..++
T Consensus        26 ~l~~i~G~NGsGKS~ileAi   45 (427)
T d1w1wa_          26 NFTSIIGPNGSGKSNMMDAI   45 (427)
T ss_dssp             SEEEEECSTTSSHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHH
Confidence            36678999999999999887

>d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=88.08  E-value=0.13  Score=37.26  Aligned_cols=17  Identities=24%  Similarity=0.325  Sum_probs=14.5

Q ss_pred             EEEEEeCCCCcHHHHHH
Q 045087           67 AVTILDSIGLDKTAFAA   83 (157)
Q Consensus        67 vi~I~G~gGiGKTtLa~   83 (157)
                      +-.+.|.+|.|||||..
T Consensus        16 ~alfFGLSGTGKTTLs~   32 (323)
T d1ii2a1          16 VTVFFGLSGTGKTTLSA   32 (323)
T ss_dssp             EEEEECCTTSSHHHHHC
T ss_pred             EEEEEccCCCCccccee
Confidence            45678999999999983

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=87.60  E-value=0.11  Score=36.68  Aligned_cols=20  Identities=15%  Similarity=0.204  Sum_probs=17.3

Q ss_pred             eEEEEEeCCCCcHHHHHHHH
Q 045087           66 SAVTILDSIGLDKTAFAAEA   85 (157)
Q Consensus        66 ~vi~I~G~gGiGKTtLa~~v   85 (157)
                      .+-.|+|.-|+|||++..++
T Consensus        25 ~lnvlvG~NgsGKS~iL~Ai   44 (308)
T d1e69a_          25 RVTAIVGPNGSGKSNIIDAI   44 (308)
T ss_dssp             SEEEEECCTTTCSTHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHH
Confidence            36789999999999998766

>d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Transcription-repair coupling factor, TRCF
species: Escherichia coli [TaxId: 562]

Probab=87.41  E-value=3  Score=28.32  Aligned_cols=69  Identities=17%  Similarity=0.090  Sum_probs=39.1

Q ss_pred             cHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCCCCCHHHHHHHHHHHh
Q 045087           47 LDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPYTCYADQILDIIIKFL  120 (157)
Q Consensus        47 r~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~l~~i~~~l  120 (157)
                      .....+++.+.+..+.  .....+.|-.|.|||-++-..... .+...+  .+-+.++...-..+....+-..+
T Consensus        60 Q~~~~~~i~~~~~~~~--~~~~LL~GdvGsGKT~V~~~a~~~-~~~~g~--qv~~l~Pt~~La~Q~~~~~~~~~  128 (233)
T d2eyqa3          60 QAQAINAVLSDMCQPL--AMDRLVCGDVGFGKTEVAMRAAFL-AVDNHK--QVAVLVPTTLLAQQHYDNFRDRF  128 (233)
T ss_dssp             HHHHHHHHHHHHHSSS--CCEEEEECCCCTTTHHHHHHHHHH-HHTTTC--EEEEECSSHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHhccC--ccCeEEEcCCCCCcHHHHHHHHHH-HHHcCC--ceEEEccHHHhHHHHHHHHHHHH
Confidence            4555566666665543  557778999999999998544331 333333  33334444434445555544433

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=87.37  E-value=0.18  Score=33.69  Aligned_cols=20  Identities=20%  Similarity=0.237  Sum_probs=17.6

Q ss_pred             EEEEEeCCCCcHHHHHHHHh
Q 045087           67 AVTILDSIGLDKTAFAAEAY   86 (157)
Q Consensus        67 vi~I~G~gGiGKTtLa~~v~   86 (157)
                      -|+|.|-.+.|||||+.++.
T Consensus         5 ni~iiGHvd~GKSTL~~~l~   24 (196)
T d1d2ea3           5 NVGTIGHVDHGKTTLTAAIT   24 (196)
T ss_dssp             EEEEESSTTSSHHHHHHHHH
T ss_pred             EEEEEeCCCCcHHHHHHHHH
Confidence            37899999999999998774

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=86.59  E-value=0.22  Score=32.86  Aligned_cols=20  Identities=10%  Similarity=0.214  Sum_probs=17.5

Q ss_pred             EEEEEeCCCCcHHHHHHHHh
Q 045087           67 AVTILDSIGLDKTAFAAEAY   86 (157)
Q Consensus        67 vi~I~G~gGiGKTtLa~~v~   86 (157)
                      -|+|.|-...|||||..++.
T Consensus         7 nIaiiGhvd~GKSTL~~~L~   26 (195)
T d1kk1a3           7 NIGMVGHVDHGKTTLTKALT   26 (195)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEEeccCCcHHHHHHHHH
Confidence            46889999999999998885

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=86.15  E-value=0.25  Score=33.53  Aligned_cols=20  Identities=5%  Similarity=0.255  Sum_probs=17.2

Q ss_pred             EEEEEeCCCCcHHHHHHHHh
Q 045087           67 AVTILDSIGLDKTAFAAEAY   86 (157)
Q Consensus        67 vi~I~G~gGiGKTtLa~~v~   86 (157)
                      -|+|.|-.+.|||||+.++.
T Consensus         5 Ni~viGHVd~GKTTL~~~Ll   24 (224)
T d1jnya3           5 NLIVIGHVDHGKSTLVGRLL   24 (224)
T ss_dssp             EEEEEESTTSSHHHHHHHHH
T ss_pred             EEEEEecCCCCHHHHHHHHH
Confidence            47889999999999997763

>d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: RecG helicase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=84.77  E-value=2.9  Score=28.96  Aligned_cols=38  Identities=18%  Similarity=0.139  Sum_probs=25.2

Q ss_pred             cHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHh
Q 045087           47 LDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAY   86 (157)
Q Consensus        47 r~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~   86 (157)
                      ....++++.+-+..+.  .....+.|--|.|||.+|-...
T Consensus        88 Q~~ai~ei~~d~~~~~--~m~rLL~GdvGSGKT~Va~~a~  125 (264)
T d1gm5a3          88 QKRAHQEIRNDMISEK--PMNRLLQGDVGSGKTVVAQLAI  125 (264)
T ss_dssp             HHHHHHHHHHHHHSSS--CCCCEEECCSSSSHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhccC--cceeeeeccccccccHHHHHHH
Confidence            3444555655555543  3456688999999999985544

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=84.73  E-value=0.3  Score=32.46  Aligned_cols=21  Identities=10%  Similarity=0.221  Sum_probs=18.5

Q ss_pred             EEEEEeCCCCcHHHHHHHHhc
Q 045087           67 AVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        67 vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      -|+|+|-...|||||+.++..
T Consensus        10 ni~iiGhVd~GKSTL~~~L~~   30 (205)
T d2qn6a3          10 NIGVVGHVDHGKTTLVQAITG   30 (205)
T ss_dssp             EEEEECSTTSSHHHHHHHHHS
T ss_pred             EEEEEEccCCcHHHHHHHHHh
Confidence            589999999999999988864

>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: putative ATP-dependent RNA helicase PF2015
species: Pyrococcus furiosus [TaxId: 2261]

Probab=84.64  E-value=0.73  Score=29.92  Aligned_cols=34  Identities=21%  Similarity=-0.031  Sum_probs=20.2

Q ss_pred             cHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHh
Q 045087           47 LDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAY   86 (157)
Q Consensus        47 r~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~   86 (157)
                      |+-+.+.+..+ ...+     +.|+++.|.|||.++..+.
T Consensus        11 r~~Q~~~~~~~-~~~n-----~lv~~pTGsGKT~i~~~~~   44 (200)
T d1wp9a1          11 RIYQEVIYAKC-KETN-----CLIVLPTGLGKTLIAMMIA   44 (200)
T ss_dssp             CHHHHHHHHHG-GGSC-----EEEECCTTSCHHHHHHHHH
T ss_pred             CHHHHHHHHHH-hcCC-----eEEEeCCCCcHHHHHHHHH
Confidence            45555555443 3321     3467899999998655443

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=83.95  E-value=0.34  Score=32.95  Aligned_cols=22  Identities=5%  Similarity=0.052  Sum_probs=18.3

Q ss_pred             ceEEEEEeCCCCcHHHHHHHHh
Q 045087           65 LSAVTILDSIGLDKTAFAAEAY   86 (157)
Q Consensus        65 ~~vi~I~G~gGiGKTtLa~~v~   86 (157)
                      .--++++|-...|||||+.++.
T Consensus         9 ~~~i~viGHVd~GKSTL~~~Ll   30 (222)
T d1zunb3           9 MLRFLTCGNVDDGKSTLIGRLL   30 (222)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHH
T ss_pred             cceEEEEcCCCCCHHHHHHHHH
Confidence            3347888999999999998884

>d2gc6a2 c.72.2.2 (A:1-296) Folylpolyglutamate synthetase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: MurD-like peptide ligases, catalytic domain
family: Folylpolyglutamate synthetase
domain: Folylpolyglutamate synthetase
species: Lactobacillus casei [TaxId: 1582]

Probab=83.09  E-value=0.55  Score=33.08  Aligned_cols=35  Identities=17%  Similarity=0.044  Sum_probs=25.5

Q ss_pred             HHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087           51 MEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        51 ~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~   87 (157)
                      +.++.+.|-.+..+.++|+|.|.-  ||||.+..+.+
T Consensus        25 ~~~~l~~lg~P~~~lkvI~VTGTN--GKtST~~~i~~   59 (296)
T d2gc6a2          25 ILTLLHALGNPQQQGRYIHVTGTN--GKGSAANAIAH   59 (296)
T ss_dssp             HHHHHHHTTCGGGSSCEEEEECSS--SHHHHHHHHHH
T ss_pred             HHHHHHHcCCchhhCCEEEEeccC--cHHHHHHHHHH
Confidence            455555565555678999999876  69988877765

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=82.95  E-value=0.49  Score=33.33  Aligned_cols=26  Identities=12%  Similarity=0.233  Sum_probs=22.6

Q ss_pred             CceEEEEEeCCCCcHHHHHHHHhcCc
Q 045087           64 QLSAVTILDSIGLDKTAFAAEAYSSN   89 (157)
Q Consensus        64 ~~~vi~I~G~gGiGKTtLa~~v~~~~   89 (157)
                      .++-|+|+|--+.|||||..++...+
T Consensus        23 ~lP~ivVvG~~ssGKSSliNaLlG~~   48 (306)
T d1jwyb_          23 DLPQIVVVGSQSSGKSSVLENIVGRD   48 (306)
T ss_dssp             CCCEEEEEECSSSSHHHHHHHHHTSC
T ss_pred             CCCeEEEEeCCCCCHHHHHHHHhCCC
Confidence            46778999999999999999998754

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=82.27  E-value=0.45  Score=32.69  Aligned_cols=20  Identities=10%  Similarity=0.215  Sum_probs=17.5

Q ss_pred             EEEEEeCCCCcHHHHHHHHh
Q 045087           67 AVTILDSIGLDKTAFAAEAY   86 (157)
Q Consensus        67 vi~I~G~gGiGKTtLa~~v~   86 (157)
                      -|+|.|-.+.|||||+.++.
T Consensus         8 Ni~iiGHvD~GKsTl~~~ll   27 (239)
T d1f60a3           8 NVVVIGHVDSGKSTTTGHLI   27 (239)
T ss_dssp             EEEEEECTTSCHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHH
Confidence            67888999999999997774

>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Hel308 helicase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=82.22  E-value=0.25  Score=32.72  Aligned_cols=16  Identities=19%  Similarity=0.152  Sum_probs=13.5

Q ss_pred             EEEEeCCCCcHHHHHH
Q 045087           68 VTILDSIGLDKTAFAA   83 (157)
Q Consensus        68 i~I~G~gGiGKTtLa~   83 (157)
                      +.+.++.|.|||+.|.
T Consensus        43 ~il~apTGsGKT~~a~   58 (202)
T d2p6ra3          43 LLLAMPTAAGKTLLAE   58 (202)
T ss_dssp             EEEECSSHHHHHHHHH
T ss_pred             EEEEcCCCCchhHHHH
Confidence            5688999999998873

>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: YFV helicase domain
species: Yellow fever virus [TaxId: 11089]

Probab=81.43  E-value=0.21  Score=30.36  Aligned_cols=18  Identities=17%  Similarity=-0.097  Sum_probs=14.2

Q ss_pred             eEEEEEeCCCCcHHHHHH
Q 045087           66 SAVTILDSIGLDKTAFAA   83 (157)
Q Consensus        66 ~vi~I~G~gGiGKTtLa~   83 (157)
                      ..+.|++..|.|||..|-
T Consensus         8 ~~~il~~~tGsGKT~~~~   25 (140)
T d1yksa1           8 MTTVLDFHPGAGKTRRFL   25 (140)
T ss_dssp             CEEEECCCTTSSTTTTHH
T ss_pred             CcEEEEcCCCCChhHHHH
Confidence            466788899999996663

>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=81.28  E-value=0.37  Score=27.99  Aligned_cols=20  Identities=20%  Similarity=0.341  Sum_probs=17.7

Q ss_pred             EEEEeCCCCcHHHHHHHHhc
Q 045087           68 VTILDSIGLDKTAFAAEAYS   87 (157)
Q Consensus        68 i~I~G~gGiGKTtLa~~v~~   87 (157)
                      |-++|.||+|-+.||+.+.+
T Consensus         4 ihfiGIgG~GMs~LA~~L~~   23 (89)
T d1j6ua1           4 IHFVGIGGIGMSAVALHEFS   23 (89)
T ss_dssp             EEEETTTSHHHHHHHHHHHH
T ss_pred             EEEEeECHHHHHHHHHHHHh
Confidence            66789999999999998766